#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Iso_dh	PF00180.20	gi|384432550|ref|YP_005641908.1|	-	4.2e-104	348.4	0.2	5e-104	348.2	0.2	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
TAF	PF02969.17	gi|384432550|ref|YP_005641908.1|	-	2.7	8.2	4.4	4.2	7.6	0.2	2.6	3	0	0	3	3	3	0	TATA	box	binding	protein	associated	factor	(TAF)
DUF2370	PF10176.9	gi|384432551|ref|YP_005641909.1|	-	1.9	8.0	6.7	1	9.0	4.7	1.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2370)
TssO	PF17561.2	gi|384432551|ref|YP_005641909.1|	-	3.2	7.8	7.4	5.1	7.2	7.4	1.3	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
Cdc6_C	PF09079.11	gi|384432552|ref|YP_005641910.1|	-	3.2e-14	52.7	0.0	6.5e-14	51.7	0.0	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|384432552|ref|YP_005641910.1|	-	9.2e-08	32.5	0.0	1.9e-07	31.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384432552|ref|YP_005641910.1|	-	1.1e-05	25.8	0.0	3.5e-05	24.2	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.7	gi|384432552|ref|YP_005641910.1|	-	0.0027	16.7	0.0	1.4	7.8	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
Sigma54_activat	PF00158.26	gi|384432552|ref|YP_005641910.1|	-	0.017	14.8	0.1	0.038	13.7	0.1	1.6	1	1	0	1	1	1	0	Sigma-54	interaction	domain
DUF2075	PF09848.9	gi|384432552|ref|YP_005641910.1|	-	0.046	13.0	0.0	0.086	12.1	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_assoc_2	PF16193.5	gi|384432552|ref|YP_005641910.1|	-	0.052	13.9	0.0	0.11	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	C-terminal	domain
Acetyltransf_15	PF17013.5	gi|384432552|ref|YP_005641910.1|	-	0.052	13.0	0.2	0.089	12.2	0.2	1.4	1	0	0	1	1	1	0	Putative	acetyl-transferase
KNOX1	PF03790.13	gi|384432552|ref|YP_005641910.1|	-	0.12	12.1	0.0	0.56	10.0	0.0	2.0	2	0	0	2	2	2	0	KNOX1	domain
DUF4201	PF13870.6	gi|384432553|ref|YP_005641911.1|	-	0.0012	18.6	4.5	0.17	11.6	0.0	2.0	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4201)
bZIP_1	PF00170.21	gi|384432553|ref|YP_005641911.1|	-	0.0082	16.2	8.2	0.56	10.4	2.6	2.2	2	0	0	2	2	2	2	bZIP	transcription	factor
Phage_HK97_TLTM	PF06120.11	gi|384432553|ref|YP_005641911.1|	-	0.0085	15.3	0.3	0.01	15.1	0.3	1.0	1	0	0	1	1	1	1	Tail	length	tape	measure	protein
DivIC	PF04977.15	gi|384432553|ref|YP_005641911.1|	-	0.014	15.1	2.7	0.77	9.6	0.0	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
TACC_C	PF05010.14	gi|384432553|ref|YP_005641911.1|	-	0.024	14.4	5.7	0.03	14.1	1.3	2.0	2	0	0	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
SlyX	PF04102.12	gi|384432553|ref|YP_005641911.1|	-	0.026	15.1	0.5	1	10.0	0.0	2.2	2	0	0	2	2	2	0	SlyX
APG6_N	PF17675.1	gi|384432553|ref|YP_005641911.1|	-	0.028	15.0	4.7	1.8	9.1	0.3	2.1	2	0	0	2	2	2	0	Apg6	coiled-coil	region
DUF2031	PF09592.10	gi|384432553|ref|YP_005641911.1|	-	0.029	13.9	0.1	0.029	13.9	0.1	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2031)
CCDC-167	PF15188.6	gi|384432553|ref|YP_005641911.1|	-	0.031	14.6	8.2	0.056	13.8	7.8	1.7	1	1	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
ZapB	PF06005.12	gi|384432553|ref|YP_005641911.1|	-	0.032	14.7	5.1	0.89	10.0	0.3	2.2	2	0	0	2	2	2	0	Cell	division	protein	ZapB
DUF4200	PF13863.6	gi|384432553|ref|YP_005641911.1|	-	0.046	14.1	6.9	1.1	9.6	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
BLOC1_2	PF10046.9	gi|384432553|ref|YP_005641911.1|	-	0.051	13.9	1.9	2.2	8.7	0.4	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
YabA	PF06156.13	gi|384432553|ref|YP_005641911.1|	-	0.055	14.1	5.4	1.8	9.2	1.2	2.1	1	1	1	2	2	2	0	Initiation	control	protein	YabA
FlaC_arch	PF05377.11	gi|384432553|ref|YP_005641911.1|	-	0.058	13.8	6.1	0.4	11.1	0.1	2.3	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
PI_PP_I	PF18363.1	gi|384432553|ref|YP_005641911.1|	-	0.06	13.5	0.2	4	7.7	0.0	2.1	1	1	1	2	2	2	0	Phosphoinositide	phosphatase	insertion	domain
MORN_2	PF07661.13	gi|384432553|ref|YP_005641911.1|	-	0.062	13.5	0.6	2.2	8.7	0.1	3.1	2	1	0	2	2	2	0	MORN	repeat	variant
DUF4140	PF13600.6	gi|384432553|ref|YP_005641911.1|	-	0.066	13.6	0.9	4.2	7.9	0.0	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
NPV_P10	PF05531.12	gi|384432553|ref|YP_005641911.1|	-	0.088	13.3	0.1	11	6.5	0.1	2.1	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Occludin_ELL	PF07303.13	gi|384432553|ref|YP_005641911.1|	-	0.092	13.5	4.6	1.1	10.1	0.7	2.1	1	1	1	2	2	2	0	Occludin	homology	domain
P4Ha_N	PF08336.11	gi|384432553|ref|YP_005641911.1|	-	0.095	12.7	3.1	3.5	7.6	0.1	2.1	2	0	0	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
TMF_DNA_bd	PF12329.8	gi|384432553|ref|YP_005641911.1|	-	0.1	12.6	12.5	0.27	11.2	0.3	2.2	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Cep57_MT_bd	PF06657.13	gi|384432553|ref|YP_005641911.1|	-	0.13	12.8	4.1	1.7	9.2	0.4	2.1	2	0	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
PRKG1_interact	PF15898.5	gi|384432553|ref|YP_005641911.1|	-	0.13	13.2	5.3	0.28	12.1	5.3	1.5	1	1	0	1	1	1	0	cGMP-dependent	protein	kinase	interacting	domain
FapA	PF03961.13	gi|384432553|ref|YP_005641911.1|	-	0.14	10.8	5.3	0.23	10.0	5.3	1.4	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
Prefoldin_2	PF01920.20	gi|384432553|ref|YP_005641911.1|	-	0.14	12.1	7.6	0.42	10.6	0.6	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
Swi5	PF07061.11	gi|384432553|ref|YP_005641911.1|	-	0.15	12.1	3.7	0.8	9.8	0.1	2.1	2	0	0	2	2	2	0	Swi5
AAA_13	PF13166.6	gi|384432553|ref|YP_005641911.1|	-	0.43	9.2	7.2	2.3	6.8	0.3	2.0	1	1	1	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|384432553|ref|YP_005641911.1|	-	1.1	9.7	10.1	1.1	9.8	1.6	2.0	2	0	0	2	2	2	0	AAA	domain
DUF5446	PF17522.2	gi|384432553|ref|YP_005641911.1|	-	1.2	9.3	7.1	2.7	8.2	0.6	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5446)
UPF0449	PF15136.6	gi|384432553|ref|YP_005641911.1|	-	1.4	9.4	4.6	4.4	7.8	0.7	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
DUF1192	PF06698.11	gi|384432553|ref|YP_005641911.1|	-	1.6	8.8	6.4	1.8	8.7	1.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
Arm-DNA-bind_2	PF12167.8	gi|384432553|ref|YP_005641911.1|	-	3.2	7.8	4.7	7.4	6.6	0.0	2.8	2	1	1	3	3	3	0	Arm	DNA-binding	domain
LapA_dom	PF06305.11	gi|384432553|ref|YP_005641911.1|	-	3.8	7.4	12.2	0.13	12.1	1.9	2.2	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
DUF5595	PF18077.1	gi|384432553|ref|YP_005641911.1|	-	4.5	7.4	9.9	6.3	7.0	1.8	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5595)
Val_tRNA-synt_C	PF10458.9	gi|384432553|ref|YP_005641911.1|	-	6.7	7.1	12.4	0.99	9.7	3.3	2.5	2	1	0	2	2	2	0	Valyl	tRNA	synthetase	tRNA	binding	arm
Atg14	PF10186.9	gi|384432553|ref|YP_005641911.1|	-	6.9	5.7	7.3	1.2e+02	1.6	7.6	1.9	1	1	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
TM_helix	PF05552.12	gi|384432554|ref|YP_005641912.1|	-	1.6e-13	50.4	10.2	8.4e-08	32.1	0.1	5.4	7	0	0	7	7	7	2	Conserved	TM	helix
DUF4731	PF15875.5	gi|384432554|ref|YP_005641912.1|	-	0.21	11.8	4.0	1.4	9.2	1.2	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4731)
Colicin_V	PF02674.16	gi|384432554|ref|YP_005641912.1|	-	3.6	7.5	39.8	0.21	11.5	2.5	4.1	1	1	3	4	4	4	0	Colicin	V	production	protein
Pterin_4a	PF01329.19	gi|384432555|ref|YP_005641913.1|	-	1.9e-25	88.9	0.0	2.2e-25	88.7	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
DUF2724	PF10893.8	gi|384432555|ref|YP_005641913.1|	-	0.058	13.2	0.0	0.081	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2724)
N2227	PF07942.12	gi|384432556|ref|YP_005641914.1|	-	0.053	12.7	0.1	0.071	12.3	0.1	1.2	1	0	0	1	1	1	0	N2227-like	protein
HmuY	PF14064.6	gi|384432557|ref|YP_005641915.1|	-	0.15	12.3	0.0	0.34	11.1	0.0	1.6	2	0	0	2	2	2	0	HmuY	protein
TPR_2	PF07719.17	gi|384432558|ref|YP_005641916.1|	-	2.4e-27	92.8	32.7	3.7e-05	23.5	3.6	8.1	6	2	2	8	8	8	7	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|384432558|ref|YP_005641916.1|	-	5.4e-27	92.5	34.3	0.00025	20.7	4.2	7.9	8	0	0	8	8	8	6	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|384432558|ref|YP_005641916.1|	-	6.9e-18	65.0	5.5	0.00024	21.7	0.0	5.1	4	1	1	5	5	5	4	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|384432558|ref|YP_005641916.1|	-	2.6e-17	62.2	26.2	5.4e-05	22.8	1.8	6.5	3	2	3	6	6	6	5	TPR	repeat
TPR_17	PF13431.6	gi|384432558|ref|YP_005641916.1|	-	2.7e-17	61.8	11.7	2.1e-05	24.6	0.2	6.1	6	0	0	6	6	6	4	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|384432558|ref|YP_005641916.1|	-	1.5e-15	56.0	30.5	0.0051	16.9	0.3	7.0	8	0	0	8	8	7	5	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|384432558|ref|YP_005641916.1|	-	7e-14	51.8	16.0	3.4e-05	24.0	1.4	5.4	2	1	3	5	5	5	4	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_19	PF14559.6	gi|384432558|ref|YP_005641916.1|	-	3.1e-13	50.0	19.8	0.01	16.3	0.9	6.3	2	2	2	5	5	5	5	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|384432558|ref|YP_005641916.1|	-	1.1e-12	48.0	0.1	0.00011	22.3	0.0	4.9	2	1	2	4	4	4	2	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|384432558|ref|YP_005641916.1|	-	2.1e-12	46.8	10.0	0.0044	17.7	0.2	7.8	2	2	6	8	8	8	3	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|384432558|ref|YP_005641916.1|	-	2.4e-12	47.0	14.7	0.037	14.3	0.5	6.2	3	3	1	5	5	5	2	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|384432558|ref|YP_005641916.1|	-	1e-10	41.5	16.2	0.84	10.4	0.2	7.9	8	0	0	8	8	8	2	Tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|384432558|ref|YP_005641916.1|	-	5.7e-10	39.3	17.3	0.00016	21.7	1.6	3.7	1	1	3	4	4	4	3	Putative	TPR-like	repeat
NARP1	PF12569.8	gi|384432558|ref|YP_005641916.1|	-	1e-08	34.6	1.1	0.00053	19.0	0.0	3.3	2	1	1	3	3	3	2	NMDA	receptor-regulated	protein	1
TPR_7	PF13176.6	gi|384432558|ref|YP_005641916.1|	-	9e-07	28.5	3.6	2	8.7	0.2	5.7	6	0	0	6	6	6	1	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.6	gi|384432558|ref|YP_005641916.1|	-	4.1e-06	26.8	10.0	0.033	14.2	0.6	4.7	4	1	1	5	5	5	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_10	PF13374.6	gi|384432558|ref|YP_005641916.1|	-	3e-05	23.7	8.8	0.051	13.5	0.0	5.2	7	0	0	7	7	6	2	Tetratricopeptide	repeat
Alkyl_sulf_dimr	PF14863.6	gi|384432558|ref|YP_005641916.1|	-	0.00035	21.1	1.5	0.0029	18.1	0.1	2.6	2	2	1	3	3	3	1	Alkyl	sulfatase	dimerisation
BTAD	PF03704.17	gi|384432558|ref|YP_005641916.1|	-	0.00052	20.5	0.3	0.19	12.1	0.0	2.7	2	1	1	3	3	3	1	Bacterial	transcriptional	activator	domain
TPR_21	PF09976.9	gi|384432558|ref|YP_005641916.1|	-	0.0012	18.6	5.6	0.021	14.5	0.3	3.5	1	1	3	4	4	4	1	Tetratricopeptide	repeat-like	domain
TPR_4	PF07721.14	gi|384432558|ref|YP_005641916.1|	-	0.0017	18.8	0.0	31	5.6	0.1	4.7	5	0	0	5	5	5	0	Tetratricopeptide	repeat
DUF3856	PF12968.7	gi|384432558|ref|YP_005641916.1|	-	0.0044	17.1	2.3	1	9.4	0.1	4.1	2	1	1	3	3	3	1	Domain	of	Unknown	Function	(DUF3856)
TPR_20	PF14561.6	gi|384432558|ref|YP_005641916.1|	-	0.0057	17.0	4.4	5.5	7.4	0.1	4.3	2	2	1	4	4	4	1	Tetratricopeptide	repeat
HrpB1_HrpK	PF09613.10	gi|384432558|ref|YP_005641916.1|	-	0.0074	15.9	0.0	0.039	13.6	0.0	2.1	2	1	1	3	3	3	1	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
DUF627	PF04781.12	gi|384432558|ref|YP_005641916.1|	-	0.0099	15.9	0.3	1.7	8.7	0.0	3.5	3	2	1	4	4	4	1	Protein	of	unknown	function	(DUF627)
Coatomer_E	PF04733.14	gi|384432558|ref|YP_005641916.1|	-	0.01	15.3	2.8	0.031	13.7	0.5	2.5	1	1	1	2	2	2	0	Coatomer	epsilon	subunit
TPR_MalT	PF17874.1	gi|384432558|ref|YP_005641916.1|	-	0.015	14.7	0.4	4.8	6.5	0.0	3.0	2	2	1	3	3	3	0	MalT-like	TPR	region
ADPrib_exo_Tox	PF03496.14	gi|384432558|ref|YP_005641916.1|	-	0.061	12.7	2.9	0.089	12.1	0.0	2.4	2	1	1	3	3	3	0	ADP-ribosyltransferase	exoenzyme
RPN7	PF10602.9	gi|384432558|ref|YP_005641916.1|	-	0.064	13.0	3.6	2.9	7.6	1.5	3.6	1	1	1	2	2	2	0	26S	proteasome	subunit	RPN7
TPR_3	PF07720.12	gi|384432558|ref|YP_005641916.1|	-	3.5	7.7	13.4	2.2	8.4	0.4	5.1	6	0	0	6	6	5	0	Tetratricopeptide	repeat
GGACT	PF06094.12	gi|384432559|ref|YP_005641917.1|	-	1.9e-28	99.5	9.4	3.1e-19	69.7	3.2	2.1	2	0	0	2	2	2	2	Gamma-glutamyl	cyclotransferase,	AIG2-like
AIG2_2	PF13772.6	gi|384432559|ref|YP_005641917.1|	-	1.1e-10	41.7	4.8	1.3e-06	28.7	0.1	2.5	2	1	0	2	2	2	2	AIG2-like	family
NfeD	PF01957.18	gi|384432561|ref|YP_005641919.1|	-	1.5e-13	50.9	3.7	2.7e-13	50.1	3.7	1.5	1	1	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
Thermopsin	PF05317.11	gi|384432562|ref|YP_005641920.1|	-	1.5e-28	100.0	12.2	6.7e-28	97.9	12.2	2.0	1	1	0	1	1	1	1	Thermopsin
Big_1	PF02369.16	gi|384432562|ref|YP_005641920.1|	-	0.023	14.7	0.3	0.023	14.7	0.3	2.4	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	1)
DUF1672	PF07901.11	gi|384432562|ref|YP_005641920.1|	-	0.18	11.1	0.4	0.34	10.2	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1672)
Band_7	PF01145.25	gi|384432563|ref|YP_005641921.1|	-	7.2e-38	130.4	3.2	1e-37	129.9	3.2	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|384432563|ref|YP_005641921.1|	-	0.0015	18.2	0.4	0.003	17.3	0.2	1.6	2	0	0	2	2	2	1	SPFH	domain-Band	7	family
Peptidase_M50B	PF13398.6	gi|384432563|ref|YP_005641921.1|	-	0.99	9.0	3.9	0.52	9.9	1.6	1.7	2	0	0	2	2	2	0	Peptidase	M50B-like
NurA	PF09376.10	gi|384432564|ref|YP_005641922.1|	-	3.9e-15	56.2	4.9	5.3e-15	55.8	4.9	1.2	1	0	0	1	1	1	1	NurA	domain
HTH_5	PF01022.20	gi|384432565|ref|YP_005641923.1|	-	0.0068	16.2	0.4	0.039	13.8	0.4	2.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
BLOC1_2	PF10046.9	gi|384432565|ref|YP_005641923.1|	-	0.045	14.1	27.9	0.04	14.2	9.5	3.8	2	1	1	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
CHGN	PF05679.16	gi|384432565|ref|YP_005641923.1|	-	0.052	12.4	7.5	0.077	11.8	7.5	1.2	1	0	0	1	1	1	0	Chondroitin	N-acetylgalactosaminyltransferase
Prominin	PF05478.11	gi|384432565|ref|YP_005641923.1|	-	0.059	11.3	17.6	0.0051	14.8	12.4	1.7	1	1	1	2	2	2	0	Prominin
HSBP1	PF06825.12	gi|384432565|ref|YP_005641923.1|	-	0.11	12.3	11.3	0.12	12.2	1.7	4.4	2	1	1	3	3	3	0	Heat	shock	factor	binding	protein	1
MitMem_reg	PF13012.6	gi|384432565|ref|YP_005641923.1|	-	0.16	12.4	9.6	0.11	12.9	7.2	1.9	1	1	1	2	2	2	0	Maintenance	of	mitochondrial	structure	and	function
DUF4349	PF14257.6	gi|384432565|ref|YP_005641923.1|	-	0.17	11.3	9.3	0.19	11.1	8.4	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
Latarcin	PF10279.9	gi|384432565|ref|YP_005641923.1|	-	0.21	12.0	14.7	0.19	12.1	6.2	3.3	1	1	2	3	3	3	0	Latarcin	precursor
NPV_P10	PF05531.12	gi|384432565|ref|YP_005641923.1|	-	0.23	11.9	11.2	3.6e+02	1.7	11.1	3.1	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Allexi_40kDa	PF05549.11	gi|384432565|ref|YP_005641923.1|	-	0.25	10.8	17.6	0.031	13.8	6.1	2.6	1	1	2	3	3	3	0	Allexivirus	40kDa	protein
Exonuc_VII_L	PF02601.15	gi|384432565|ref|YP_005641923.1|	-	0.26	10.8	16.5	35	3.8	16.5	2.1	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Baculo_gp64	PF03273.13	gi|384432565|ref|YP_005641923.1|	-	0.32	9.8	6.0	0.47	9.2	6.0	1.2	1	0	0	1	1	1	0	Baculovirus	gp64	envelope	glycoprotein	family
GARP	PF16731.5	gi|384432565|ref|YP_005641923.1|	-	0.36	10.5	9.0	4.6	6.9	3.4	2.7	1	1	1	2	2	2	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
LMBR1	PF04791.16	gi|384432565|ref|YP_005641923.1|	-	0.38	9.6	12.0	0.45	9.4	12.0	1.2	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
CHD5	PF04420.14	gi|384432565|ref|YP_005641923.1|	-	0.41	10.5	11.9	1.5	8.7	8.6	2.4	1	1	1	2	2	2	0	CHD5-like	protein
Baculo_PEP_C	PF04513.12	gi|384432565|ref|YP_005641923.1|	-	0.69	9.9	12.5	1.3	9.0	2.4	2.9	1	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DASH_Dam1	PF08653.10	gi|384432565|ref|YP_005641923.1|	-	0.78	9.6	7.9	0.28	11.0	0.6	3.7	2	1	1	3	3	3	0	DASH	complex	subunit	Dam1
Peptidase_S46	PF10459.9	gi|384432565|ref|YP_005641923.1|	-	0.79	8.3	11.0	0.93	8.0	11.0	1.1	1	0	0	1	1	1	0	Peptidase	S46
ECH_2	PF16113.5	gi|384432565|ref|YP_005641923.1|	-	0.82	9.1	3.9	1.2	8.5	3.9	1.3	1	0	0	1	1	1	0	Enoyl-CoA	hydratase/isomerase
Hormone_3	PF00159.18	gi|384432565|ref|YP_005641923.1|	-	0.89	9.7	3.1	36	4.5	0.0	3.8	4	0	0	4	4	4	0	Pancreatic	hormone	peptide
DUF948	PF06103.11	gi|384432565|ref|YP_005641923.1|	-	3.5	8.0	7.6	9.1	6.6	2.6	2.8	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF745	PF05335.13	gi|384432565|ref|YP_005641923.1|	-	3.8	7.2	7.8	3	7.5	6.1	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
LOH1CR12	PF10158.9	gi|384432565|ref|YP_005641923.1|	-	4.1	7.4	19.8	0.89	9.6	3.7	3.0	2	1	1	4	4	3	0	Tumour	suppressor	protein
DUF5082	PF16888.5	gi|384432565|ref|YP_005641923.1|	-	5.1	7.4	24.8	0.71	10.2	20.0	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
Fzo_mitofusin	PF04799.13	gi|384432565|ref|YP_005641923.1|	-	5.9	6.4	19.3	0.89	9.1	1.5	3.0	2	2	1	3	3	3	0	fzo-like	conserved	region
MerR-DNA-bind	PF09278.11	gi|384432565|ref|YP_005641923.1|	-	6.9	7.3	10.3	16	6.1	0.3	4.1	1	1	3	4	4	4	0	MerR,	DNA	binding
Bcr-Abl_Oligo	PF09036.10	gi|384432565|ref|YP_005641923.1|	-	7.5	6.6	8.7	7.3	6.7	0.4	3.2	1	1	2	3	3	3	0	Bcr-Abl	oncoprotein	oligomerisation	domain
APG6_N	PF17675.1	gi|384432565|ref|YP_005641923.1|	-	8	7.0	28.7	22	5.5	18.1	2.7	1	1	1	2	2	2	0	Apg6	coiled-coil	region
DUF2203	PF09969.9	gi|384432565|ref|YP_005641923.1|	-	8	7.2	15.2	7.1	7.4	5.6	2.9	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
FliD_N	PF02465.18	gi|384432565|ref|YP_005641923.1|	-	8.5	7.2	11.4	1.6e+02	3.1	11.4	2.8	1	1	0	1	1	1	0	Flagellar	hook-associated	protein	2	N-terminus
Apolipoprotein	PF01442.18	gi|384432565|ref|YP_005641923.1|	-	9.3	6.1	15.7	1.9e+02	1.8	15.7	2.4	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
LUC7	PF03194.15	gi|384432565|ref|YP_005641923.1|	-	9.8	5.8	15.8	15	5.2	15.8	1.6	1	1	0	1	1	1	0	LUC7	N_terminus
KAP_NTPase	PF07693.14	gi|384432566|ref|YP_005641924.1|	-	0.0002	20.7	0.5	0.00079	18.7	0.0	2.0	2	1	0	2	2	2	1	KAP	family	P-loop	domain
DUF2791	PF10923.8	gi|384432566|ref|YP_005641924.1|	-	0.0025	16.7	0.3	0.033	13.0	0.0	2.4	2	0	0	2	2	2	1	P-loop	Domain	of	unknown	function	(DUF2791)
PRK	PF00485.18	gi|384432566|ref|YP_005641924.1|	-	0.023	14.4	0.0	0.13	12.0	0.0	2.4	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
ABC_tran	PF00005.27	gi|384432566|ref|YP_005641924.1|	-	0.053	14.0	0.9	0.46	11.0	0.0	2.9	3	1	0	3	3	3	0	ABC	transporter
Syntaxin_2	PF14523.6	gi|384432566|ref|YP_005641924.1|	-	0.06	13.7	0.3	0.06	13.7	0.3	6.1	6	1	0	6	6	6	0	Syntaxin-like	protein
AAA_29	PF13555.6	gi|384432566|ref|YP_005641924.1|	-	0.08	12.7	0.0	0.24	11.2	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
EbsA	PF17255.2	gi|384432566|ref|YP_005641924.1|	-	0.13	12.6	0.1	0.13	12.6	0.1	3.1	3	0	0	3	3	3	0	EbsA-like	protein
WGG	PF10273.9	gi|384432566|ref|YP_005641924.1|	-	0.55	10.9	2.6	2.1	9.1	0.0	3.2	4	0	0	4	4	2	0	Pre-rRNA-processing	protein	TSR2
COG2	PF06148.11	gi|384432566|ref|YP_005641924.1|	-	0.65	10.1	10.4	0.43	10.7	0.3	4.3	2	1	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
7TMR-HDED	PF07697.11	gi|384432566|ref|YP_005641924.1|	-	1.2	9.2	10.5	0.092	12.8	3.4	2.8	3	2	1	4	4	4	0	7TM-HD	extracellular
Laminin_II	PF06009.12	gi|384432566|ref|YP_005641924.1|	-	1.5	8.8	12.8	0.86	9.6	2.1	3.9	3	0	0	3	3	3	0	Laminin	Domain	II
FliS	PF02561.14	gi|384432566|ref|YP_005641924.1|	-	5.4	7.3	11.9	0.17	12.2	1.6	3.8	4	0	0	4	4	4	0	Flagellar	protein	FliS
DUF948	PF06103.11	gi|384432566|ref|YP_005641924.1|	-	5.5	7.3	7.6	38	4.6	0.8	4.2	4	1	0	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF87	PF01935.17	gi|384432567|ref|YP_005641925.1|	-	1.6e-42	146.1	1.1	2.6e-42	145.4	1.1	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|384432567|ref|YP_005641925.1|	-	0.00054	20.2	0.1	0.37	11.1	0.0	3.1	3	0	0	3	3	3	1	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|384432567|ref|YP_005641925.1|	-	0.002	17.1	0.1	0.016	14.1	0.0	2.1	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|384432567|ref|YP_005641925.1|	-	0.0089	15.4	0.0	0.042	13.2	0.0	1.9	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
DUF771	PF05595.11	gi|384432567|ref|YP_005641925.1|	-	0.059	13.3	0.1	0.44	10.5	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF771)
DUF3389	PF11869.8	gi|384432570|ref|YP_005641928.1|	-	0.0048	17.0	0.0	0.039	14.1	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3389)
Thioredox_DsbH	PF03190.15	gi|384432571|ref|YP_005641929.1|	-	2.1e-62	209.9	0.0	3.8e-62	209.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|384432571|ref|YP_005641929.1|	-	7.6e-15	54.9	0.0	1.3e-14	54.1	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|384432571|ref|YP_005641929.1|	-	0.00079	19.9	0.0	0.0016	18.9	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.20	gi|384432571|ref|YP_005641929.1|	-	0.0044	17.0	0.1	0.0096	15.9	0.1	1.5	1	0	0	1	1	1	1	Thioredoxin
adh_short_C2	PF13561.6	gi|384432572|ref|YP_005641930.1|	-	5.5e-28	98.1	0.0	7.6e-28	97.7	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384432572|ref|YP_005641930.1|	-	7.2e-24	84.3	0.2	9.1e-24	84.0	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384432572|ref|YP_005641930.1|	-	0.00047	20.1	0.5	0.0022	17.9	0.5	1.8	1	1	0	1	1	1	1	KR	domain
ADH_zinc_N	PF00107.26	gi|384432572|ref|YP_005641930.1|	-	0.023	14.7	0.3	0.64	10.0	0.1	2.4	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Shikimate_DH	PF01488.20	gi|384432572|ref|YP_005641930.1|	-	0.12	12.5	0.2	0.21	11.7	0.2	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|384432572|ref|YP_005641930.1|	-	0.12	11.7	0.0	0.22	10.8	0.0	1.5	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3HCDH_N	PF02737.18	gi|384432572|ref|YP_005641930.1|	-	0.12	12.2	0.1	0.23	11.4	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TENA_THI-4	PF03070.16	gi|384432573|ref|YP_005641931.1|	-	1.1e-27	97.3	0.0	1.4e-27	96.9	0.0	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
NucS	PF01939.16	gi|384432575|ref|YP_005641933.1|	-	6.2e-59	199.1	0.2	7.6e-59	198.8	0.2	1.0	1	0	0	1	1	1	1	Endonuclease	NucS
UPF0102	PF02021.17	gi|384432575|ref|YP_005641933.1|	-	5.7e-05	23.3	0.5	0.0028	17.8	0.0	3.2	2	1	2	4	4	4	1	Uncharacterised	protein	family	UPF0102
Cas_Cas4	PF01930.17	gi|384432575|ref|YP_005641933.1|	-	0.00067	19.8	0.1	0.0011	19.1	0.1	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_10	PF07788.11	gi|384432575|ref|YP_005641933.1|	-	0.1	12.5	0.5	0.38	10.7	0.1	2.2	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
Glycos_transf_2	PF00535.26	gi|384432576|ref|YP_005641934.1|	-	1.9e-15	57.1	0.0	3.5e-15	56.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|384432576|ref|YP_005641934.1|	-	3.6e-13	49.4	0.0	5.7e-13	48.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_3	PF13641.6	gi|384432576|ref|YP_005641934.1|	-	1.1e-10	41.9	0.0	7.6e-10	39.1	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Radical_SAM	PF04055.21	gi|384432578|ref|YP_005641936.1|	-	8e-14	52.4	0.4	4.3e-13	50.0	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384432578|ref|YP_005641936.1|	-	6.4e-09	36.2	0.0	1.2e-08	35.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384432578|ref|YP_005641936.1|	-	5.4e-05	23.3	0.0	0.0001	22.4	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
OPT	PF03169.15	gi|384432579|ref|YP_005641937.1|	-	0.012	14.3	1.0	0.015	14.0	1.0	1.1	1	0	0	1	1	1	0	OPT	oligopeptide	transporter	protein
PLDc_2	PF13091.6	gi|384432579|ref|YP_005641937.1|	-	0.012	15.4	0.8	0.029	14.3	0.2	1.8	2	0	0	2	2	2	0	PLD-like	domain
DUF2207	PF09972.9	gi|384432579|ref|YP_005641937.1|	-	0.031	13.1	0.8	0.036	12.9	0.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DBI_PRT	PF02277.17	gi|384432580|ref|YP_005641938.1|	-	9.1e-09	35.0	0.1	1.3e-08	34.5	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyltransferase
DUF86	PF01934.17	gi|384432581|ref|YP_005641939.1|	-	0.07	13.0	0.6	0.17	11.7	0.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF86
Glu-tRNAGln	PF02686.15	gi|384432581|ref|YP_005641939.1|	-	0.12	12.6	0.3	0.23	11.8	0.3	1.4	1	0	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
CelTOS	PF18659.1	gi|384432581|ref|YP_005641939.1|	-	0.64	10.5	4.9	1.5	9.2	0.5	2.2	1	1	1	2	2	2	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
Aminotran_5	PF00266.19	gi|384432582|ref|YP_005641940.1|	-	7.7e-45	153.4	0.0	1.5e-44	152.5	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|384432582|ref|YP_005641940.1|	-	6e-07	28.3	0.1	8.8e-07	27.8	0.1	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|384432582|ref|YP_005641940.1|	-	0.04	13.2	0.0	0.08	12.2	0.0	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
AMP-binding	PF00501.28	gi|384432583|ref|YP_005641941.1|	-	4.7e-70	236.3	0.0	6.1e-70	235.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
ACAS_N	PF16177.5	gi|384432583|ref|YP_005641941.1|	-	1.2e-15	57.1	1.3	2.4e-15	56.1	1.3	1.5	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
AMP-binding_C	PF13193.6	gi|384432583|ref|YP_005641941.1|	-	1e-14	55.3	0.2	2e-14	54.3	0.2	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
PIN_6	PF17146.4	gi|384432584|ref|YP_005641942.1|	-	3.2e-18	66.0	0.3	4.5e-18	65.5	0.3	1.2	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
DZR	PF12773.7	gi|384432584|ref|YP_005641942.1|	-	0.0025	17.8	0.2	0.0034	17.4	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn_ribbon_SprT	PF17283.2	gi|384432584|ref|YP_005641942.1|	-	0.003	17.4	3.6	0.0089	15.9	3.6	1.8	1	1	0	1	1	1	1	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384432584|ref|YP_005641942.1|	-	0.0044	17.1	2.7	0.0093	16.1	2.7	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
FANCL_C	PF11793.8	gi|384432584|ref|YP_005641942.1|	-	0.0074	16.4	0.6	0.013	15.7	0.6	1.5	1	0	0	1	1	1	1	FANCL	C-terminal	domain
DUF1272	PF06906.11	gi|384432584|ref|YP_005641942.1|	-	0.0076	16.3	0.3	0.012	15.7	0.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
HypA	PF01155.19	gi|384432584|ref|YP_005641942.1|	-	0.012	15.7	1.7	0.018	15.0	1.7	1.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PIN_5	PF08745.11	gi|384432584|ref|YP_005641942.1|	-	0.019	14.4	0.1	0.12	11.7	0.0	1.9	2	0	0	2	2	2	0	PINc	domain	ribonuclease
DAHP_snth_FXD	PF18152.1	gi|384432584|ref|YP_005641942.1|	-	0.069	13.0	0.6	2.6	7.9	0.1	2.4	1	1	1	2	2	2	0	DAHP	synthase	ferredoxin-like	domain
C1_4	PF07975.12	gi|384432584|ref|YP_005641942.1|	-	0.069	13.4	1.4	0.14	12.4	1.4	1.5	1	0	0	1	1	1	0	TFIIH	C1-like	domain
DNA_RNApol_7kD	PF03604.13	gi|384432584|ref|YP_005641942.1|	-	0.19	11.5	5.1	0.35	10.6	5.1	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2H2	PF00096.26	gi|384432584|ref|YP_005641942.1|	-	0.32	11.5	2.1	31	5.3	0.3	2.7	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Ribosomal_L37ae	PF01780.19	gi|384432584|ref|YP_005641942.1|	-	0.67	10.1	4.4	4.8	7.3	0.9	2.3	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
Rubredoxin_2	PF18073.1	gi|384432584|ref|YP_005641942.1|	-	0.78	9.5	3.5	1.1	9.0	3.5	1.2	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
ADK_lid	PF05191.14	gi|384432584|ref|YP_005641942.1|	-	0.8	9.7	3.4	1.7	8.7	3.4	1.6	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zf-C2HC_2	PF13913.6	gi|384432584|ref|YP_005641942.1|	-	5	7.2	6.4	6.1	6.9	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-ribbon_3	PF13248.6	gi|384432584|ref|YP_005641942.1|	-	6.3	6.3	6.6	4.7	6.7	1.6	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
Sgf11	PF08209.11	gi|384432584|ref|YP_005641942.1|	-	7.1	6.3	5.9	6.4	6.4	1.3	2.2	1	1	1	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
NAD_kinase	PF01513.21	gi|384432585|ref|YP_005641943.1|	-	5e-24	85.0	0.3	1.2e-23	83.7	0.3	1.5	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|384432585|ref|YP_005641943.1|	-	0.019	14.6	0.0	0.042	13.5	0.0	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
MFS_1	PF07690.16	gi|384432586|ref|YP_005641944.1|	-	5.5e-21	74.9	48.4	1.5e-20	73.4	47.2	2.1	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Pyr_redox_2	PF07992.14	gi|384432588|ref|YP_005641946.1|	-	1.2e-30	106.8	2.0	1.5e-30	106.5	2.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384432588|ref|YP_005641946.1|	-	1.3e-26	93.6	1.3	2.8e-25	89.2	0.2	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384432588|ref|YP_005641946.1|	-	1.7e-13	51.0	0.8	1.9e-10	41.2	0.0	2.7	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|384432588|ref|YP_005641946.1|	-	2.9e-09	36.5	1.2	1e-07	31.5	0.0	2.9	3	1	1	4	4	4	2	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.14	gi|384432588|ref|YP_005641946.1|	-	1.5e-08	33.8	0.8	0.00015	20.6	0.0	3.6	4	1	1	5	5	5	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384432588|ref|YP_005641946.1|	-	1.7e-06	27.7	0.4	5.6e-05	22.7	0.0	2.6	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|384432588|ref|YP_005641946.1|	-	1.7e-06	27.9	1.6	0.016	14.8	0.3	3.2	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|384432588|ref|YP_005641946.1|	-	5e-05	23.4	0.3	0.0015	18.7	0.1	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|384432588|ref|YP_005641946.1|	-	7e-05	23.2	2.7	0.00089	19.7	0.1	2.5	2	1	0	2	2	2	1	Putative	NAD(P)-binding
FMO-like	PF00743.19	gi|384432588|ref|YP_005641946.1|	-	0.00032	19.2	0.4	0.0036	15.8	0.0	2.0	1	1	1	2	2	2	1	Flavin-binding	monooxygenase-like
Thi4	PF01946.17	gi|384432588|ref|YP_005641946.1|	-	0.002	17.4	0.1	0.017	14.4	0.1	2.4	2	0	0	2	2	2	1	Thi4	family
Spermine_synth	PF01564.17	gi|384432588|ref|YP_005641946.1|	-	0.006	16.0	1.0	0.084	12.3	0.1	2.2	2	0	0	2	2	2	1	Spermine/spermidine	synthase	domain
FAD_binding_2	PF00890.24	gi|384432588|ref|YP_005641946.1|	-	0.011	14.8	0.3	0.49	9.4	0.1	2.6	3	0	0	3	3	3	0	FAD	binding	domain
GIDA	PF01134.22	gi|384432588|ref|YP_005641946.1|	-	0.1	11.6	0.1	16	4.5	0.0	3.0	3	0	0	3	3	3	0	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|384432588|ref|YP_005641946.1|	-	0.1	11.8	0.2	13	4.9	0.0	2.4	2	1	0	2	2	2	0	FAD	binding	domain
Met_10	PF02475.16	gi|384432589|ref|YP_005641947.1|	-	7.4e-30	104.2	0.6	9e-30	103.9	0.6	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_25	PF13649.6	gi|384432589|ref|YP_005641947.1|	-	0.00045	20.9	0.0	0.00087	20.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384432589|ref|YP_005641947.1|	-	0.00088	18.7	0.0	0.0015	17.9	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|384432589|ref|YP_005641947.1|	-	0.0021	17.6	0.0	0.0041	16.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|384432589|ref|YP_005641947.1|	-	0.025	15.2	0.0	0.049	14.3	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|384432589|ref|YP_005641947.1|	-	0.042	13.8	0.0	0.09	12.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF371	PF04027.13	gi|384432590|ref|YP_005641948.1|	-	2.3e-48	163.6	1.0	2.7e-48	163.3	1.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
CRS1_YhbY	PF01985.21	gi|384432591|ref|YP_005641949.1|	-	7.5e-15	54.9	2.6	8.1e-15	54.8	2.6	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Rpr2	PF04032.16	gi|384432592|ref|YP_005641950.1|	-	1.9e-10	40.9	0.3	2.7e-10	40.4	0.3	1.3	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Ribosomal_L40e	PF01020.17	gi|384432592|ref|YP_005641950.1|	-	0.014	15.2	0.5	0.038	13.9	0.5	1.8	1	0	0	1	1	1	0	Ribosomal	L40e	family
GFA	PF04828.14	gi|384432592|ref|YP_005641950.1|	-	0.036	14.4	0.0	0.045	14.1	0.0	1.2	1	0	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
EMG1	PF03587.14	gi|384432593|ref|YP_005641951.1|	-	7.9e-46	156.2	0.2	8.9e-46	156.0	0.2	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
RDV-p3	PF09231.10	gi|384432594|ref|YP_005641952.1|	-	0.038	11.7	0.0	0.05	11.3	0.0	1.1	1	0	0	1	1	1	0	Rice	dwarf	virus	p3
YfzA	PF14118.6	gi|384432595|ref|YP_005641953.1|	-	0.029	14.7	2.4	0.045	14.1	2.4	1.5	1	1	0	1	1	1	0	YfzA-like	protein
PDR_assoc	PF08370.11	gi|384432595|ref|YP_005641953.1|	-	0.087	12.6	3.8	0.12	12.2	3.8	1.1	1	0	0	1	1	1	0	Plant	PDR	ABC	transporter	associated
Cation_efflux	PF01545.21	gi|384432596|ref|YP_005641954.1|	-	1.3e-25	90.3	23.1	1.8e-25	89.9	23.1	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|384432596|ref|YP_005641954.1|	-	0.024	14.8	0.0	0.056	13.6	0.0	1.6	1	0	0	1	1	1	0	Dimerisation	domain	of	Zinc	Transporter
VitK2_biosynth	PF02621.14	gi|384432597|ref|YP_005641955.1|	-	5.4e-63	213.0	0.0	6.1e-63	212.8	0.0	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
NTPase_I-T	PF01931.18	gi|384432598|ref|YP_005641956.1|	-	9.2e-49	165.4	0.0	1e-48	165.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
Thioredoxin	PF00085.20	gi|384432600|ref|YP_005641958.1|	-	6e-29	100.1	0.0	8.6e-29	99.6	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|384432600|ref|YP_005641958.1|	-	6.5e-09	36.2	0.1	3.8e-07	30.5	0.1	2.3	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|384432600|ref|YP_005641958.1|	-	1.9e-07	31.3	0.2	0.00022	21.5	0.0	3.0	2	1	1	3	3	3	2	Thioredoxin-like
OST3_OST6	PF04756.13	gi|384432600|ref|YP_005641958.1|	-	5.5e-06	25.9	0.0	6.7e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
HyaE	PF07449.11	gi|384432600|ref|YP_005641958.1|	-	2e-05	24.5	0.0	4.1e-05	23.5	0.0	1.6	1	1	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_3	PF13192.6	gi|384432600|ref|YP_005641958.1|	-	7.3e-05	22.7	0.0	0.00016	21.6	0.0	1.6	1	1	1	2	2	2	1	Thioredoxin	domain
Phosducin	PF02114.16	gi|384432600|ref|YP_005641958.1|	-	8.8e-05	21.6	0.0	9.8e-05	21.4	0.0	1.1	1	0	0	1	1	1	1	Phosducin
Thioredoxin_9	PF14595.6	gi|384432600|ref|YP_005641958.1|	-	0.00056	19.7	0.2	0.00074	19.3	0.2	1.3	1	1	0	1	1	1	1	Thioredoxin
Redoxin	PF08534.10	gi|384432600|ref|YP_005641958.1|	-	0.0018	18.0	0.1	0.014	15.1	0.0	2.0	1	1	1	2	2	2	1	Redoxin
DIM1	PF02966.16	gi|384432600|ref|YP_005641958.1|	-	0.006	16.4	0.0	0.0081	15.9	0.0	1.2	1	0	0	1	1	1	1	Mitosis	protein	DIM1
DAO	PF01266.24	gi|384432601|ref|YP_005641959.1|	-	2e-18	67.1	0.0	3.5e-18	66.3	0.0	1.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|384432601|ref|YP_005641959.1|	-	0.0031	16.8	0.9	0.2	10.9	0.9	2.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384432601|ref|YP_005641959.1|	-	0.0063	15.8	3.2	0.14	11.4	0.0	2.5	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|384432601|ref|YP_005641959.1|	-	0.032	13.3	0.0	0.065	12.3	0.0	1.5	2	0	0	2	2	2	0	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|384432601|ref|YP_005641959.1|	-	0.066	12.4	0.1	0.1	11.8	0.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
HI0933_like	PF03486.14	gi|384432601|ref|YP_005641959.1|	-	0.087	11.5	0.3	3.7	6.2	0.2	2.1	2	0	0	2	2	2	0	HI0933-like	protein
tRNA_deacylase	PF04414.12	gi|384432602|ref|YP_005641960.1|	-	2.7e-56	190.4	0.1	3.3e-56	190.1	0.1	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
His_Phos_1	PF00300.22	gi|384432603|ref|YP_005641961.1|	-	7.9e-39	133.4	0.0	1e-38	133.0	0.0	1.1	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
Metallophos	PF00149.28	gi|384432604|ref|YP_005641962.1|	-	8e-08	33.0	1.0	1e-06	29.4	1.0	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384432604|ref|YP_005641962.1|	-	2e-06	28.1	0.1	0.0014	18.9	0.1	2.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|384432604|ref|YP_005641962.1|	-	6.8e-05	22.3	1.3	0.0014	18.0	0.1	2.7	3	0	0	3	3	3	1	Metallophosphoesterase,	calcineurin	superfamily
Herpes_UL31	PF02718.14	gi|384432604|ref|YP_005641962.1|	-	0.16	10.9	0.0	0.29	10.1	0.0	1.4	1	0	0	1	1	1	0	Herpesvirus	UL31-like	protein
GSIII_N	PF12437.8	gi|384432605|ref|YP_005641963.1|	-	0.094	12.4	0.0	0.1	12.3	0.0	1.1	1	0	0	1	1	1	0	Glutamine	synthetase	type	III	N	terminal
HNH_repeat	PF18780.1	gi|384432605|ref|YP_005641963.1|	-	0.18	11.6	1.0	2.2	8.2	0.0	2.2	2	0	0	2	2	2	0	Homing	endonuclease	repeat
AAA_13	PF13166.6	gi|384432606|ref|YP_005641964.1|	-	2.4e-05	23.2	51.3	0.00065	18.5	5.2	3.3	1	1	2	3	3	3	2	AAA	domain
DUF4407	PF14362.6	gi|384432606|ref|YP_005641964.1|	-	0.36	10.1	35.8	1.3	8.3	16.9	3.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
NPV_P10	PF05531.12	gi|384432606|ref|YP_005641964.1|	-	1.1	9.7	28.6	4.4	7.8	0.1	5.3	3	2	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
SMC_N	PF02463.19	gi|384432606|ref|YP_005641964.1|	-	1.9	7.9	27.0	20	4.5	25.6	2.9	2	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Spc7	PF08317.11	gi|384432606|ref|YP_005641964.1|	-	2.8	6.7	63.2	0.41	9.5	14.8	4.1	2	2	1	3	3	3	0	Spc7	kinetochore	protein
DUF2935	PF11155.8	gi|384432606|ref|YP_005641964.1|	-	3.3	8.1	11.1	47	4.3	0.3	4.8	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF2935)
APG6_N	PF17675.1	gi|384432606|ref|YP_005641964.1|	-	9.9	6.7	69.8	0.099	13.2	9.9	4.6	1	1	1	4	4	4	0	Apg6	coiled-coil	region
IU_nuc_hydro	PF01156.19	gi|384432607|ref|YP_005641965.1|	-	5.7e-74	249.4	0.0	6.4e-74	249.3	0.0	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
FUR	PF01475.19	gi|384432608|ref|YP_005641966.1|	-	4.4e-23	81.7	0.0	5e-23	81.5	0.0	1.0	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_5	PF01022.20	gi|384432608|ref|YP_005641966.1|	-	0.00039	20.2	0.0	0.0074	16.1	0.0	2.3	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384432608|ref|YP_005641966.1|	-	0.0028	17.7	0.0	0.0051	16.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|384432608|ref|YP_005641966.1|	-	0.0034	17.3	0.2	0.014	15.3	0.1	2.2	1	1	0	1	1	1	1	HTH	domain
PadR	PF03551.14	gi|384432608|ref|YP_005641966.1|	-	0.0076	16.2	0.1	0.012	15.6	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_32	PF13565.6	gi|384432608|ref|YP_005641966.1|	-	0.014	16.0	0.0	0.021	15.4	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
CtsR_C	PF17727.1	gi|384432608|ref|YP_005641966.1|	-	0.026	14.7	0.1	0.062	13.4	0.0	1.7	2	0	0	2	2	2	0	CtsR	C-terminal	dimerization	domain
HxlR	PF01638.17	gi|384432608|ref|YP_005641966.1|	-	0.027	14.3	0.0	0.045	13.6	0.0	1.5	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Penicillinase_R	PF03965.16	gi|384432608|ref|YP_005641966.1|	-	0.029	14.7	0.0	0.044	14.1	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_23	PF13384.6	gi|384432608|ref|YP_005641966.1|	-	0.099	12.5	0.0	2.5	8.0	0.0	2.2	1	1	0	1	1	1	0	Homeodomain-like	domain
Methyltransf_11	PF08241.12	gi|384432610|ref|YP_005641968.1|	-	2.5e-14	53.7	0.0	3.7e-14	53.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384432610|ref|YP_005641968.1|	-	6.8e-07	29.9	0.0	1.3e-06	29.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384432610|ref|YP_005641968.1|	-	7.1e-06	26.0	0.0	9.1e-06	25.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384432610|ref|YP_005641968.1|	-	0.0047	16.3	0.1	0.0096	15.3	0.1	1.5	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|384432610|ref|YP_005641968.1|	-	0.038	13.8	0.1	0.066	13.0	0.1	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
NurA	PF09376.10	gi|384432611|ref|YP_005641969.1|	-	4e-26	92.2	0.9	5.8e-26	91.7	0.9	1.2	1	0	0	1	1	1	1	NurA	domain
AAA_23	PF13476.6	gi|384432612|ref|YP_005641970.1|	-	9.5e-18	65.4	21.7	9.5e-18	65.4	21.7	8.1	1	1	2	3	3	1	1	AAA	domain
AAA_15	PF13175.6	gi|384432612|ref|YP_005641970.1|	-	7.3e-17	62.1	103.5	9.3e-09	35.5	36.4	3.7	1	1	1	2	2	2	2	AAA	ATPase	domain
Rad50_zn_hook	PF04423.14	gi|384432612|ref|YP_005641970.1|	-	3.7e-14	52.3	0.9	3.7e-14	52.3	0.9	9.9	11	4	2	13	13	11	1	Rad50	zinc	hook	motif
SMC_N	PF02463.19	gi|384432612|ref|YP_005641970.1|	-	5.2e-13	48.9	53.2	1.1e-11	44.7	53.2	2.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|384432612|ref|YP_005641970.1|	-	4.9e-11	43.0	15.1	1.6e-07	31.4	2.3	5.0	2	2	1	4	4	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|384432612|ref|YP_005641970.1|	-	4.4e-08	32.3	101.9	0.024	13.3	27.9	6.0	1	1	4	6	6	6	4	AAA	domain
Spc7	PF08317.11	gi|384432612|ref|YP_005641970.1|	-	3.6e-07	29.4	111.2	0.0023	16.9	17.4	5.1	2	2	3	5	5	5	4	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|384432612|ref|YP_005641970.1|	-	3.2e-05	23.6	0.1	6e-05	22.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|384432612|ref|YP_005641970.1|	-	8.9e-05	22.2	0.0	8.9e-05	22.2	0.0	4.2	3	2	1	4	4	4	1	AAA	domain
SbcCD_C	PF13558.6	gi|384432612|ref|YP_005641970.1|	-	0.00028	21.1	0.0	0.00069	19.8	0.0	1.7	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
HALZ	PF02183.18	gi|384432612|ref|YP_005641970.1|	-	0.0012	19.0	2.3	0.0012	19.0	2.3	9.3	10	0	0	10	10	7	2	Homeobox	associated	leucine	zipper
Cep57_CLD_2	PF14197.6	gi|384432612|ref|YP_005641970.1|	-	0.0065	16.5	13.1	0.0065	16.5	13.1	7.5	4	3	3	7	7	1	1	Centrosome	localisation	domain	of	PPC89
DASH_Dam1	PF08653.10	gi|384432612|ref|YP_005641970.1|	-	0.0091	15.8	1.2	0.0091	15.8	1.2	8.0	11	0	0	11	11	10	2	DASH	complex	subunit	Dam1
ABC_tran_CTD	PF16326.5	gi|384432612|ref|YP_005641970.1|	-	0.014	15.6	6.3	0.014	15.6	6.3	10.3	3	2	5	8	8	5	0	ABC	transporter	C-terminal	domain
ABC_tran	PF00005.27	gi|384432612|ref|YP_005641970.1|	-	0.015	15.8	0.0	0.015	15.8	0.0	6.1	2	1	0	2	2	1	0	ABC	transporter
XhlA	PF10779.9	gi|384432612|ref|YP_005641970.1|	-	0.017	15.3	8.1	0.017	15.3	8.1	10.5	4	2	7	12	12	10	0	Haemolysin	XhlA
HHH_8	PF14716.6	gi|384432612|ref|YP_005641970.1|	-	0.074	13.4	0.4	0.074	13.4	0.4	4.4	6	0	0	6	6	3	0	Helix-hairpin-helix	domain
RsgA_GTPase	PF03193.16	gi|384432612|ref|YP_005641970.1|	-	0.11	12.4	0.1	0.11	12.4	0.1	4.2	4	0	0	4	4	3	0	RsgA	GTPase
GAS	PF13851.6	gi|384432612|ref|YP_005641970.1|	-	0.21	10.9	132.1	0.062	12.6	20.6	6.3	2	2	4	6	6	5	0	Growth-arrest	specific	micro-tubule	binding
DUF3584	PF12128.8	gi|384432612|ref|YP_005641970.1|	-	0.24	8.9	87.1	0.19	9.2	8.6	3.5	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3584)
TMF_TATA_bd	PF12325.8	gi|384432612|ref|YP_005641970.1|	-	0.91	9.8	110.5	0.18	12.0	18.0	8.3	2	2	6	8	8	8	0	TATA	element	modulatory	factor	1	TATA	binding
DUF3450	PF11932.8	gi|384432612|ref|YP_005641970.1|	-	1.4	8.2	75.9	0.5	9.6	7.5	6.3	1	1	5	6	6	5	0	Protein	of	unknown	function	(DUF3450)
DUF948	PF06103.11	gi|384432612|ref|YP_005641970.1|	-	4.1	7.7	38.2	6.8	7.0	3.9	7.7	3	2	4	7	7	7	0	Bacterial	protein	of	unknown	function	(DUF948)
DHR10	PF18595.1	gi|384432612|ref|YP_005641970.1|	-	4.2	7.5	114.8	0.3	11.2	14.6	7.2	3	3	5	8	8	8	0	Designed	helical	repeat	protein	10	domain
DUF1664	PF07889.12	gi|384432612|ref|YP_005641970.1|	-	6.3	6.9	68.9	0.18	11.8	7.3	8.1	3	2	3	7	7	7	0	Protein	of	unknown	function	(DUF1664)
APG17	PF04108.12	gi|384432612|ref|YP_005641970.1|	-	7	5.6	79.9	0.12	11.4	17.9	6.7	1	1	3	5	5	4	0	Autophagy	protein	Apg17
Metallophos	PF00149.28	gi|384432613|ref|YP_005641971.1|	-	1.7e-11	45.0	0.4	4.5e-11	43.7	0.2	1.8	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384432613|ref|YP_005641971.1|	-	1.8e-10	41.2	0.0	5.1e-10	39.8	0.0	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
hnRNP_Q_AcD	PF18360.1	gi|384432613|ref|YP_005641971.1|	-	0.18	11.8	0.2	0.66	10.0	0.0	2.0	2	0	0	2	2	2	0	Heterogeneous	nuclear	ribonucleoprotein	Q	acidic	domain
DUF87	PF01935.17	gi|384432614|ref|YP_005641972.1|	-	7.8e-44	150.4	2.1	1.4e-43	149.7	2.1	1.4	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|384432614|ref|YP_005641972.1|	-	6.1e-12	44.9	0.0	2e-05	23.4	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
HAS-barrel	PF09378.10	gi|384432614|ref|YP_005641972.1|	-	1.2e-09	38.2	0.0	4.6e-09	36.3	0.0	2.1	1	0	0	1	1	1	1	HAS	barrel	domain
TrwB_AAD_bind	PF10412.9	gi|384432614|ref|YP_005641972.1|	-	2.4e-05	23.4	0.0	6.3e-05	22.1	0.0	1.6	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|384432614|ref|YP_005641972.1|	-	0.0014	17.7	0.0	0.16	10.8	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
FtsK_SpoIIIE	PF01580.18	gi|384432614|ref|YP_005641972.1|	-	0.002	17.5	0.0	0.033	13.6	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
ResIII	PF04851.15	gi|384432614|ref|YP_005641972.1|	-	0.016	15.2	0.1	0.99	9.4	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
ABC_tran	PF00005.27	gi|384432614|ref|YP_005641972.1|	-	0.045	14.3	0.0	0.086	13.4	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
Fz	PF01392.22	gi|384432615|ref|YP_005641973.1|	-	0.00052	20.6	2.4	0.35	11.5	0.2	2.2	1	1	1	2	2	2	2	Fz	domain
TPR_15	PF13429.6	gi|384432615|ref|YP_005641973.1|	-	0.0074	15.5	1.8	0.016	14.5	0.0	2.0	2	1	0	2	2	2	1	Tetratricopeptide	repeat
DUF2024	PF09630.10	gi|384432615|ref|YP_005641973.1|	-	0.011	15.6	8.3	0.35	10.8	0.8	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2024)
MPM1	PF17234.2	gi|384432615|ref|YP_005641973.1|	-	0.022	15.0	6.9	0.44	10.8	0.9	2.1	1	1	1	2	2	2	0	Mitochondrial	peculiar	membrane	protein	1
DUF2009	PF09418.10	gi|384432615|ref|YP_005641973.1|	-	0.029	13.4	5.0	0.033	13.3	5.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2009)
YlzJ	PF14035.6	gi|384432615|ref|YP_005641973.1|	-	0.045	14.0	2.8	2.5	8.4	0.3	2.4	2	0	0	2	2	2	0	YlzJ-like	protein
Rubrerythrin	PF02915.17	gi|384432615|ref|YP_005641973.1|	-	0.047	14.1	20.7	1.8	9.0	6.6	3.6	1	1	2	3	3	3	0	Rubrerythrin
DUF3412	PF11892.8	gi|384432615|ref|YP_005641973.1|	-	0.14	12.2	2.3	4.6	7.4	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3412)
TBCC_N	PF16752.5	gi|384432615|ref|YP_005641973.1|	-	0.22	11.9	12.2	0.36	11.3	5.5	2.6	1	1	2	3	3	3	0	Tubulin-specific	chaperone	C	N-terminal	domain
Blo-t-5	PF11642.8	gi|384432615|ref|YP_005641973.1|	-	0.41	10.6	14.1	2.1	8.4	0.8	3.1	2	1	1	3	3	3	0	Mite	allergen	Blo	t	5
DUF4404	PF14357.6	gi|384432615|ref|YP_005641973.1|	-	1.4	9.6	10.2	14	6.4	1.3	3.2	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4404)
HMG_box	PF00505.19	gi|384432615|ref|YP_005641973.1|	-	2.6	8.5	8.5	2.3	8.7	0.6	2.5	1	1	1	2	2	2	0	HMG	(high	mobility	group)	box
MRNIP	PF15749.5	gi|384432615|ref|YP_005641973.1|	-	6	7.6	10.2	14	6.4	0.8	2.4	1	1	1	2	2	2	0	MRN-interacting	protein
Carb_kinase	PF01256.17	gi|384432616|ref|YP_005641974.1|	-	3.5e-51	174.0	0.0	5e-51	173.5	0.0	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.15	gi|384432616|ref|YP_005641974.1|	-	2.1e-39	135.2	0.0	3.9e-39	134.3	0.0	1.5	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
HK	PF02110.15	gi|384432616|ref|YP_005641974.1|	-	1.2e-06	28.1	0.0	3.2e-06	26.7	0.0	1.6	2	0	0	2	2	2	1	Hydroxyethylthiazole	kinase	family
KR	PF08659.10	gi|384432616|ref|YP_005641974.1|	-	0.011	15.6	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	KR	domain
DUF498	PF04430.14	gi|384432616|ref|YP_005641974.1|	-	0.046	13.8	0.0	1.3	9.1	0.0	2.7	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF498/DUF598)
adh_short	PF00106.25	gi|384432616|ref|YP_005641974.1|	-	0.052	13.0	0.0	0.15	11.5	0.0	1.7	1	0	0	1	1	1	0	short	chain	dehydrogenase
AhpC-TSA	PF00578.21	gi|384432617|ref|YP_005641975.1|	-	1.2e-40	138.2	0.2	1.5e-40	138.0	0.2	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|384432617|ref|YP_005641975.1|	-	8.2e-26	90.5	0.0	9.6e-26	90.3	0.0	1.0	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|384432617|ref|YP_005641975.1|	-	5e-07	30.0	0.1	8.3e-07	29.3	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA_2	PF13911.6	gi|384432617|ref|YP_005641975.1|	-	0.00029	20.9	0.1	0.00041	20.4	0.1	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
SCO1-SenC	PF02630.14	gi|384432617|ref|YP_005641975.1|	-	0.0018	18.2	0.0	0.0024	17.8	0.0	1.3	1	0	0	1	1	1	1	SCO1/SenC
Polysacc_deac_2	PF04748.13	gi|384432617|ref|YP_005641975.1|	-	0.0095	15.1	0.1	0.011	14.9	0.1	1.2	1	0	0	1	1	1	1	Divergent	polysaccharide	deacetylase
Peptidase_M60	PF13402.6	gi|384432617|ref|YP_005641975.1|	-	0.059	12.9	0.0	0.061	12.8	0.0	1.1	1	0	0	1	1	1	0	Peptidase	M60,	enhancin	and	enhancin-like
Inhibitor_I78	PF11720.8	gi|384432617|ref|YP_005641975.1|	-	0.13	12.4	0.1	0.33	11.0	0.1	1.7	1	0	0	1	1	1	0	Peptidase	inhibitor	I78	family
PEPcase_2	PF14010.6	gi|384432618|ref|YP_005641976.1|	-	1.7e-218	726.1	1.0	1.9e-218	725.9	1.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
DUF4375	PF14300.6	gi|384432619|ref|YP_005641977.1|	-	0.034	14.4	0.0	0.061	13.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4375)
CbiA	PF01656.23	gi|384432619|ref|YP_005641977.1|	-	0.18	11.8	0.0	0.27	11.3	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF1641	PF07849.11	gi|384432620|ref|YP_005641978.1|	-	1.2e-14	53.9	0.0	3.2e-14	52.5	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Pyr_redox_2	PF07992.14	gi|384432621|ref|YP_005641979.1|	-	1.5e-25	90.1	0.0	4.1e-15	55.8	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384432621|ref|YP_005641979.1|	-	0.00026	21.5	0.2	0.073	13.6	0.0	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Abhydrolase_1	PF00561.20	gi|384432622|ref|YP_005641980.1|	-	1.1e-16	61.2	0.0	7.3e-14	52.0	0.0	2.0	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|384432622|ref|YP_005641980.1|	-	6.2e-11	42.0	0.0	5e-07	29.2	0.0	2.7	1	1	1	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|384432622|ref|YP_005641980.1|	-	8e-08	33.2	0.0	9.9e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Ndr	PF03096.14	gi|384432622|ref|YP_005641980.1|	-	3.5e-06	25.9	0.3	7.3e-05	21.6	0.3	2.1	1	1	1	2	2	2	1	Ndr	family
Abhydrolase_2	PF02230.16	gi|384432622|ref|YP_005641980.1|	-	0.00029	20.7	0.0	0.00049	20.0	0.0	1.4	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
FSH1	PF03959.13	gi|384432622|ref|YP_005641980.1|	-	0.16	11.6	0.0	0.26	10.9	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
DUF2250	PF10007.9	gi|384432623|ref|YP_005641981.1|	-	1.7e-69	230.0	15.1	2.7e-37	126.7	4.0	2.0	2	0	0	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4423	PF14394.6	gi|384432623|ref|YP_005641981.1|	-	4.1e-06	26.6	2.1	0.0013	18.5	0.1	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|384432623|ref|YP_005641981.1|	-	0.00069	20.1	1.0	0.29	11.7	0.1	3.0	3	0	0	3	3	3	2	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384432623|ref|YP_005641981.1|	-	0.0091	15.9	1.0	0.15	12.0	0.0	2.9	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HemN_C	PF06969.16	gi|384432623|ref|YP_005641981.1|	-	0.02	14.9	0.5	0.24	11.5	0.1	2.7	3	0	0	3	3	3	0	HemN	C-terminal	domain
DUF3116	PF11313.8	gi|384432623|ref|YP_005641981.1|	-	0.031	14.1	2.0	2.8	7.9	0.0	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3116)
HTH_45	PF14947.6	gi|384432623|ref|YP_005641981.1|	-	0.093	12.7	2.2	1.3	9.1	0.2	3.1	2	2	0	2	2	2	0	Winged	helix-turn-helix
ParB	PF08775.10	gi|384432623|ref|YP_005641981.1|	-	0.097	13.2	1.1	0.18	12.3	1.1	1.4	1	0	0	1	1	1	0	ParB	family
MeaB	PF03308.16	gi|384432624|ref|YP_005641982.1|	-	1.5e-84	283.1	2.5	1.9e-84	282.8	2.5	1.0	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|384432624|ref|YP_005641982.1|	-	1.2e-06	28.2	1.4	8.6e-06	25.5	1.4	2.2	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
DUF87	PF01935.17	gi|384432624|ref|YP_005641982.1|	-	5.8e-05	23.3	2.8	0.00021	21.4	0.1	2.2	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
MipZ	PF09140.11	gi|384432624|ref|YP_005641982.1|	-	0.0001	21.7	0.0	0.0002	20.7	0.0	1.5	1	0	0	1	1	1	1	ATPase	MipZ
ATP_bind_1	PF03029.17	gi|384432624|ref|YP_005641982.1|	-	0.00012	21.9	0.1	0.0019	18.0	0.0	2.3	2	1	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.14	gi|384432624|ref|YP_005641982.1|	-	0.00074	19.4	0.1	0.0021	18.0	0.1	1.8	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TrwB_AAD_bind	PF10412.9	gi|384432624|ref|YP_005641982.1|	-	0.00099	18.1	0.1	0.0017	17.3	0.1	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CbiA	PF01656.23	gi|384432624|ref|YP_005641982.1|	-	0.0024	17.9	0.0	0.0055	16.8	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FtsK_SpoIIIE	PF01580.18	gi|384432624|ref|YP_005641982.1|	-	0.0027	17.1	0.6	0.013	14.9	0.1	2.0	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_18	PF13238.6	gi|384432624|ref|YP_005641982.1|	-	0.0071	16.9	0.1	0.023	15.3	0.1	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|384432624|ref|YP_005641982.1|	-	0.0076	16.0	0.1	0.014	15.2	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.22	gi|384432624|ref|YP_005641982.1|	-	0.01	15.5	0.0	0.3	10.7	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|384432624|ref|YP_005641982.1|	-	0.013	15.7	0.0	0.028	14.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|384432624|ref|YP_005641982.1|	-	0.014	15.3	2.4	0.021	14.8	0.2	2.3	3	0	0	3	3	2	0	NTPase
ABC_tran	PF00005.27	gi|384432624|ref|YP_005641982.1|	-	0.032	14.7	1.3	0.074	13.6	0.2	2.0	2	0	0	2	2	2	0	ABC	transporter
AAA_19	PF13245.6	gi|384432624|ref|YP_005641982.1|	-	0.035	14.4	0.2	0.092	13.1	0.2	1.7	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|384432624|ref|YP_005641982.1|	-	0.042	13.0	0.5	0.081	12.1	0.1	1.7	2	0	0	2	2	2	0	NB-ARC	domain
Viral_helicase1	PF01443.18	gi|384432624|ref|YP_005641982.1|	-	0.06	13.1	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
TFA2_Winged_2	PF18121.1	gi|384432624|ref|YP_005641982.1|	-	0.061	13.0	0.0	9.4	6.0	0.0	2.7	2	1	0	2	2	2	0	TFA2	Winged	helix	domain	2
AAA_29	PF13555.6	gi|384432624|ref|YP_005641982.1|	-	0.077	12.8	0.9	0.17	11.7	0.9	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|384432624|ref|YP_005641982.1|	-	0.09	13.1	0.1	0.16	12.3	0.1	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.6	gi|384432624|ref|YP_005641982.1|	-	0.17	12.3	1.1	0.33	11.4	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
DUF463	PF04317.12	gi|384432624|ref|YP_005641982.1|	-	0.19	10.6	0.0	0.3	10.0	0.0	1.3	1	0	0	1	1	1	0	YcjX-like	family,	DUF463
MMR_HSR1	PF01926.23	gi|384432624|ref|YP_005641982.1|	-	0.24	11.5	1.8	0.51	10.5	0.1	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.12	gi|384432624|ref|YP_005641982.1|	-	0.34	10.2	2.2	0.86	8.8	0.1	2.2	2	0	0	2	2	2	0	Zeta	toxin
B12-binding	PF02310.19	gi|384432625|ref|YP_005641983.1|	-	2.3e-23	82.5	0.8	3e-23	82.2	0.6	1.2	1	1	0	1	1	1	1	B12	binding	domain
IMPDH	PF00478.25	gi|384432625|ref|YP_005641983.1|	-	0.0015	17.6	0.1	0.0021	17.1	0.1	1.2	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
Nitro_FeMo-Co	PF02579.17	gi|384432625|ref|YP_005641983.1|	-	0.0093	16.3	0.7	2.8	8.3	0.1	2.4	1	1	0	2	2	2	2	Dinitrogenase	iron-molybdenum	cofactor
QRPTase_C	PF01729.19	gi|384432625|ref|YP_005641983.1|	-	0.015	15.1	0.5	0.041	13.7	0.1	1.7	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
Radical_SAM	PF04055.21	gi|384432625|ref|YP_005641983.1|	-	0.022	15.1	0.4	0.09	13.2	0.3	2.1	1	1	1	2	2	2	0	Radical	SAM	superfamily
ADH_zinc_N	PF00107.26	gi|384432625|ref|YP_005641983.1|	-	0.027	14.4	0.0	0.53	10.3	0.0	2.1	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Peripla_BP_6	PF13458.6	gi|384432625|ref|YP_005641983.1|	-	0.028	14.1	0.0	0.031	13.9	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	binding	protein
TPP_enzyme_N	PF02776.18	gi|384432625|ref|YP_005641983.1|	-	0.044	13.4	0.2	3.8	7.1	0.0	2.4	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
BcrAD_BadFG	PF01869.20	gi|384432625|ref|YP_005641983.1|	-	0.069	12.6	0.1	0.11	12.0	0.0	1.4	1	1	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
PSS	PF03034.15	gi|384432626|ref|YP_005641984.1|	-	0.047	13.4	1.4	0.056	13.2	0.9	1.3	1	1	0	1	1	1	0	Phosphatidyl	serine	synthase
DUF2633	PF11119.8	gi|384432626|ref|YP_005641984.1|	-	0.15	11.9	0.5	0.15	11.9	0.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2633)
HTH_20	PF12840.7	gi|384432627|ref|YP_005641985.1|	-	5.6e-06	26.3	0.0	4.2e-05	23.5	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|384432627|ref|YP_005641985.1|	-	6.3e-05	22.8	0.0	0.0001	22.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|384432627|ref|YP_005641985.1|	-	0.00014	21.8	0.0	0.00024	21.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|384432627|ref|YP_005641985.1|	-	0.00023	21.6	0.1	0.00033	21.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384432627|ref|YP_005641985.1|	-	0.00027	20.4	0.3	0.00067	19.2	0.3	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|384432627|ref|YP_005641985.1|	-	0.00079	19.3	0.2	0.0014	18.5	0.2	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.10	gi|384432627|ref|YP_005641985.1|	-	0.004	17.1	0.2	0.0064	16.4	0.2	1.3	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
LexA_DNA_bind	PF01726.16	gi|384432627|ref|YP_005641985.1|	-	0.0051	16.6	0.0	0.0086	15.8	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_36	PF13730.6	gi|384432627|ref|YP_005641985.1|	-	0.0084	16.1	0.0	0.023	14.6	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|384432627|ref|YP_005641985.1|	-	0.015	15.2	0.1	0.026	14.5	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
Membralin	PF09746.9	gi|384432627|ref|YP_005641985.1|	-	0.016	14.3	1.1	0.02	14.0	1.1	1.1	1	0	0	1	1	1	0	Tumour-associated	protein
HTH_45	PF14947.6	gi|384432627|ref|YP_005641985.1|	-	0.02	14.9	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|384432627|ref|YP_005641985.1|	-	0.025	14.5	0.0	0.04	13.8	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF4357	PF14267.6	gi|384432627|ref|YP_005641985.1|	-	0.15	12.0	0.1	8.8	6.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4357)
Syndecan	PF01034.20	gi|384432628|ref|YP_005641986.1|	-	0.13	12.2	2.6	0.27	11.2	2.6	1.5	1	0	0	1	1	1	0	Syndecan	domain
DUF3493	PF11998.8	gi|384432629|ref|YP_005641987.1|	-	0.018	15.2	4.3	0.71	10.1	1.0	2.4	2	0	0	2	2	2	0	Low	psii	accumulation1	/	Rep27
CTV_P6	PF06706.11	gi|384432629|ref|YP_005641987.1|	-	0.21	11.3	7.1	2.3	8.0	3.8	2.6	2	0	0	2	2	2	0	Citrus	tristeza	virus	6-kDa	protein
Pox_F11	PF04943.12	gi|384432630|ref|YP_005641988.1|	-	0.14	11.2	2.3	0.16	11.1	2.3	1.2	1	0	0	1	1	1	0	Poxvirus	F11	protein
TauE	PF01925.19	gi|384432631|ref|YP_005641989.1|	-	1.3e-55	188.6	33.6	1.5e-55	188.4	33.6	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Caps_synth_CapC	PF14102.6	gi|384432631|ref|YP_005641989.1|	-	0.21	12.0	16.2	0.083	13.3	12.5	2.2	2	0	0	2	2	2	0	Capsule	biosynthesis	CapC
PT-VENN	PF04829.13	gi|384432631|ref|YP_005641989.1|	-	0.47	10.6	1.6	1.2	9.2	0.3	2.4	2	0	0	2	2	2	0	Pre-toxin	domain	with	VENN	motif
DUF5592	PF17332.2	gi|384432631|ref|YP_005641989.1|	-	0.47	11.0	0.1	0.47	11.0	0.1	2.8	3	1	0	3	3	3	0	Family	of	unknown	function	(DUF5592)
Phage_holin_3_6	PF07332.11	gi|384432631|ref|YP_005641989.1|	-	2.1	8.4	18.6	85	3.2	0.1	3.6	2	1	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Fe_dep_repr_C	PF02742.15	gi|384432633|ref|YP_005641991.1|	-	3.8e-17	62.1	0.0	7e-17	61.3	0.0	1.4	2	0	0	2	2	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|384432633|ref|YP_005641991.1|	-	1.1e-07	32.0	0.0	1.5e-07	31.5	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|384432633|ref|YP_005641991.1|	-	6.5e-05	22.8	0.0	0.00013	21.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|384432633|ref|YP_005641991.1|	-	0.0004	20.2	0.0	0.00085	19.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|384432633|ref|YP_005641991.1|	-	0.0014	18.5	0.0	0.002	17.9	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4423	PF14394.6	gi|384432633|ref|YP_005641991.1|	-	0.0024	17.6	0.0	0.0028	17.4	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.6	gi|384432633|ref|YP_005641991.1|	-	0.0036	17.8	0.0	0.0061	17.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
B-block_TFIIIC	PF04182.12	gi|384432633|ref|YP_005641991.1|	-	0.0099	16.0	0.0	0.018	15.2	0.0	1.6	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_IclR	PF09339.10	gi|384432633|ref|YP_005641991.1|	-	0.01	15.6	0.0	0.017	14.9	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|384432633|ref|YP_005641991.1|	-	0.017	14.9	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_45	PF14947.6	gi|384432633|ref|YP_005641991.1|	-	0.043	13.8	0.2	0.17	11.9	0.0	1.9	1	1	1	2	2	2	0	Winged	helix-turn-helix
FeoC	PF09012.10	gi|384432633|ref|YP_005641991.1|	-	0.045	13.8	0.0	0.069	13.2	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
IF2_N	PF04760.15	gi|384432633|ref|YP_005641991.1|	-	0.061	13.1	0.8	17	5.3	0.0	3.1	3	0	0	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
Rrf2	PF02082.20	gi|384432633|ref|YP_005641991.1|	-	0.062	13.7	0.0	0.13	12.7	0.0	1.5	2	0	0	2	2	1	0	Transcriptional	regulator
RuvB_C	PF05491.13	gi|384432633|ref|YP_005641991.1|	-	0.11	12.4	0.0	0.28	11.1	0.0	1.7	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
DUF2250	PF10007.9	gi|384432633|ref|YP_005641991.1|	-	0.13	12.4	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GerE	PF00196.19	gi|384432633|ref|YP_005641991.1|	-	0.15	11.6	0.1	0.49	10.0	0.1	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_5	PF01022.20	gi|384432633|ref|YP_005641991.1|	-	0.15	11.9	0.0	0.33	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DHDPS	PF00701.22	gi|384432634|ref|YP_005641992.1|	-	8.2e-60	202.0	0.0	9.6e-60	201.7	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
UDG	PF03167.19	gi|384432635|ref|YP_005641993.1|	-	2e-45	154.6	0.0	2.5e-45	154.2	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
adh_short_C2	PF13561.6	gi|384432636|ref|YP_005641994.1|	-	2.1e-49	168.2	0.0	3.5e-49	167.5	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384432636|ref|YP_005641994.1|	-	2.1e-32	112.2	0.0	2.6e-32	111.9	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384432636|ref|YP_005641994.1|	-	5.7e-05	23.1	0.0	9.9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	KR	domain
Polysacc_synt_2	PF02719.15	gi|384432636|ref|YP_005641994.1|	-	0.066	12.3	0.0	0.15	11.2	0.0	1.5	2	0	0	2	2	2	0	Polysaccharide	biosynthesis	protein
THF_DHG_CYH_C	PF02882.19	gi|384432636|ref|YP_005641994.1|	-	0.11	11.8	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
GDP_Man_Dehyd	PF16363.5	gi|384432636|ref|YP_005641994.1|	-	0.18	11.2	0.0	0.25	10.7	0.0	1.2	1	0	0	1	1	1	0	GDP-mannose	4,6	dehydratase
AAA_15	PF13175.6	gi|384432637|ref|YP_005641995.1|	-	5.1e-27	95.5	12.3	6.6e-17	62.3	0.0	2.9	2	1	0	3	3	3	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|384432637|ref|YP_005641995.1|	-	2.4e-19	70.3	1.3	1.3e-14	54.8	0.1	3.0	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384432637|ref|YP_005641995.1|	-	2.8e-07	30.2	2.0	2.4e-06	27.1	2.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384432637|ref|YP_005641995.1|	-	0.00013	22.5	0.3	0.00032	21.3	0.3	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|384432637|ref|YP_005641995.1|	-	0.019	13.7	1.1	0.058	12.0	0.5	1.9	2	0	0	2	2	2	0	AAA	domain
Peptidase_M3	PF01432.20	gi|384432637|ref|YP_005641995.1|	-	0.12	11.6	0.1	0.18	11.1	0.1	1.1	1	0	0	1	1	1	0	Peptidase	family	M3
DUF2813	PF11398.8	gi|384432637|ref|YP_005641995.1|	-	0.14	11.4	1.3	1.4	8.1	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2813)
ABC_tran	PF00005.27	gi|384432637|ref|YP_005641995.1|	-	0.17	12.4	0.2	2.4	8.7	0.2	2.8	2	1	0	2	2	2	0	ABC	transporter
DUF131	PF01998.17	gi|384432638|ref|YP_005641996.1|	-	2.7e-17	62.2	10.0	2.7e-17	62.2	10.0	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
Claudin_3	PF06653.11	gi|384432638|ref|YP_005641996.1|	-	0.00096	19.1	4.1	0.001	19.0	4.1	1.0	1	0	0	1	1	1	1	Tight	junction	protein,	Claudin-like
DUF5589	PF17672.1	gi|384432638|ref|YP_005641996.1|	-	0.091	12.7	0.6	0.13	12.2	0.6	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5589)
Bap31	PF05529.12	gi|384432638|ref|YP_005641996.1|	-	0.11	12.4	4.2	0.25	11.2	0.0	2.0	2	0	0	2	2	2	0	Bap31/Bap29	transmembrane	region
DUF1218	PF06749.12	gi|384432638|ref|YP_005641996.1|	-	0.43	11.1	3.9	1	9.9	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1218)
Saf_2TM	PF18303.1	gi|384432638|ref|YP_005641996.1|	-	0.58	9.7	8.7	0.98	9.0	0.6	2.0	1	1	1	2	2	2	0	SAVED-fused	2TM	effector	domain
DUF2614	PF11023.8	gi|384432638|ref|YP_005641996.1|	-	0.77	9.9	7.7	0.87	9.7	0.3	2.0	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
DUF872	PF05915.12	gi|384432638|ref|YP_005641996.1|	-	1.1	9.5	4.9	0.2	11.8	0.5	1.8	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Orf78	PF06024.12	gi|384432638|ref|YP_005641996.1|	-	1.1	9.6	7.2	7	7.0	4.0	2.2	2	0	0	2	2	2	0	Orf78	(ac78)
DUF3185	PF11381.8	gi|384432638|ref|YP_005641996.1|	-	1.2	9.2	9.4	3.3	7.8	9.1	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3185)
Baculo_11_kDa	PF06143.11	gi|384432638|ref|YP_005641996.1|	-	2.2	7.9	12.2	4.7	6.8	0.0	2.1	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
DUF2892	PF11127.8	gi|384432638|ref|YP_005641996.1|	-	2.7	8.1	6.6	1.2	9.3	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Sigma_reg_N	PF13800.6	gi|384432638|ref|YP_005641996.1|	-	3.2	8.1	8.0	8.3	6.8	0.1	2.1	2	0	0	2	2	2	0	Sigma	factor	regulator	N-terminal
DUF2207	PF09972.9	gi|384432638|ref|YP_005641996.1|	-	3.5	6.3	8.1	4.4	6.0	8.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
ODV-E18	PF10717.9	gi|384432638|ref|YP_005641996.1|	-	9.6	6.2	11.3	0.47	10.4	0.5	2.1	2	0	0	2	2	2	0	Occlusion-derived	virus	envelope	protein	ODV-E18
NUDIX	PF00293.28	gi|384432640|ref|YP_005641998.1|	-	2.4e-20	72.9	0.0	3e-20	72.6	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|384432640|ref|YP_005641998.1|	-	0.00012	22.1	0.0	0.00014	21.8	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_2	PF13869.6	gi|384432640|ref|YP_005641998.1|	-	0.061	12.9	0.0	0.093	12.3	0.0	1.3	1	0	0	1	1	1	0	Nucleotide	hydrolase
tRNA-synt_1e	PF01406.19	gi|384432641|ref|YP_005641999.1|	-	5.3e-125	416.8	0.3	1.1e-124	415.7	0.3	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|384432641|ref|YP_005641999.1|	-	3e-15	55.9	0.7	3.3e-07	29.4	0.2	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|384432641|ref|YP_005641999.1|	-	4.1e-06	25.3	0.0	0.0008	17.8	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
DALR_2	PF09190.11	gi|384432641|ref|YP_005641999.1|	-	9.4e-06	26.0	0.1	2.6e-05	24.6	0.1	1.7	1	0	0	1	1	1	1	DALR	domain
tRNA-synt_1f	PF01921.18	gi|384432641|ref|YP_005641999.1|	-	5.4e-05	22.3	0.4	0.0013	17.7	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1c	PF00749.21	gi|384432641|ref|YP_005641999.1|	-	0.00096	18.1	0.8	0.044	12.7	0.1	3.3	3	1	0	3	3	3	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1d	PF00750.19	gi|384432641|ref|YP_005641999.1|	-	0.00097	18.2	0.2	0.0029	16.6	0.1	1.7	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(R)
TB2_DP1_HVA22	PF03134.19	gi|384432641|ref|YP_005641999.1|	-	0.055	13.4	0.4	0.15	12.0	0.1	1.9	2	0	0	2	2	2	0	TB2/DP1,	HVA22	family
bact-PGI_C	PF10432.9	gi|384432642|ref|YP_005642000.1|	-	5.1e-19	68.8	0.1	1.4e-18	67.4	0.1	1.7	1	1	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
SIS	PF01380.22	gi|384432642|ref|YP_005642000.1|	-	0.00023	21.0	1.1	0.0066	16.3	0.1	2.7	3	0	0	3	3	3	1	SIS	domain
NadA	PF02445.16	gi|384432642|ref|YP_005642000.1|	-	0.074	12.2	0.0	0.14	11.3	0.0	1.4	1	0	0	1	1	1	0	Quinolinate	synthetase	A	protein
PMBR	PF09373.10	gi|384432642|ref|YP_005642000.1|	-	0.083	13.1	0.1	0.2	11.9	0.1	1.7	1	0	0	1	1	1	0	Pseudomurein-binding	repeat
SIS_2	PF13580.6	gi|384432642|ref|YP_005642000.1|	-	0.12	12.4	0.1	0.25	11.4	0.1	1.5	1	0	0	1	1	1	0	SIS	domain
Pyr_redox_2	PF07992.14	gi|384432644|ref|YP_005642002.1|	-	1.9e-51	175.1	0.1	2.4e-51	174.7	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384432644|ref|YP_005642002.1|	-	5.9e-22	78.0	7.2	2e-16	60.3	1.8	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384432644|ref|YP_005642002.1|	-	3.1e-18	66.1	0.8	8.2e-15	54.8	0.3	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|384432644|ref|YP_005642002.1|	-	1.5e-16	60.6	0.3	5.1e-16	58.9	0.3	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
NAD_binding_8	PF13450.6	gi|384432644|ref|YP_005642002.1|	-	2.6e-09	37.2	0.2	0.00051	20.2	0.0	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|384432644|ref|YP_005642002.1|	-	9.7e-08	31.1	4.9	0.002	16.9	0.0	3.8	3	1	1	4	4	4	2	HI0933-like	protein
DAO	PF01266.24	gi|384432644|ref|YP_005642002.1|	-	5.7e-07	29.4	4.2	0.062	12.9	0.8	3.7	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
TrkA_N	PF02254.18	gi|384432644|ref|YP_005642002.1|	-	0.00018	21.7	0.2	0.018	15.3	0.2	2.8	2	0	0	2	2	2	1	TrkA-N	domain
Lycopene_cycl	PF05834.12	gi|384432644|ref|YP_005642002.1|	-	0.0004	19.5	0.2	0.11	11.5	0.0	2.4	2	0	0	2	2	2	2	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|384432644|ref|YP_005642002.1|	-	0.00076	18.4	2.2	0.0051	15.7	0.1	2.2	2	0	0	2	2	2	1	Tryptophan	halogenase
FAD_binding_2	PF00890.24	gi|384432644|ref|YP_005642002.1|	-	0.0011	18.2	4.9	0.078	12.0	0.0	3.4	4	0	0	4	4	4	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384432644|ref|YP_005642002.1|	-	0.0011	18.3	0.3	0.31	10.3	0.0	2.5	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|384432644|ref|YP_005642002.1|	-	0.0032	17.5	2.8	1.3	8.9	0.0	3.7	4	0	0	4	4	4	1	FAD-NAD(P)-binding
F420_oxidored	PF03807.17	gi|384432644|ref|YP_005642002.1|	-	0.0046	17.5	1.3	0.022	15.4	0.3	2.6	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Thi4	PF01946.17	gi|384432644|ref|YP_005642002.1|	-	0.0061	15.8	2.1	0.02	14.1	0.0	2.6	2	1	0	2	2	2	1	Thi4	family
NAD_Gly3P_dh_N	PF01210.23	gi|384432644|ref|YP_005642002.1|	-	0.0063	16.5	0.4	0.049	13.6	0.0	2.3	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
GIDA	PF01134.22	gi|384432644|ref|YP_005642002.1|	-	0.013	14.6	10.6	0.39	9.8	0.1	3.5	3	1	1	4	4	4	0	Glucose	inhibited	division	protein	A
ApbA	PF02558.16	gi|384432644|ref|YP_005642002.1|	-	0.021	14.5	1.6	0.074	12.7	0.1	2.5	3	0	0	3	3	3	0	Ketopantoate	reductase	PanE/ApbA
Mqo	PF06039.15	gi|384432644|ref|YP_005642002.1|	-	0.029	12.9	0.0	0.057	12.0	0.0	1.5	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
K_oxygenase	PF13434.6	gi|384432644|ref|YP_005642002.1|	-	0.03	13.5	0.0	0.14	11.3	0.0	2.0	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.18	gi|384432644|ref|YP_005642002.1|	-	0.042	13.7	0.3	0.091	12.6	0.3	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|384432644|ref|YP_005642002.1|	-	0.044	13.9	0.1	0.12	12.6	0.1	1.7	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
FAD_binding_3	PF01494.19	gi|384432644|ref|YP_005642002.1|	-	0.046	13.0	0.8	2.5	7.2	0.3	2.2	2	0	0	2	2	2	0	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|384432644|ref|YP_005642002.1|	-	0.087	13.3	0.9	5.8	7.4	0.7	2.7	2	1	0	2	2	2	0	Putative	NAD(P)-binding
FAD_oxidored	PF12831.7	gi|384432644|ref|YP_005642002.1|	-	0.33	10.3	2.6	15	4.8	0.4	2.6	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
NurA	PF09376.10	gi|384432645|ref|YP_005642003.1|	-	7.7e-13	48.7	0.2	1.1e-12	48.2	0.2	1.2	1	0	0	1	1	1	1	NurA	domain
DUF87	PF01935.17	gi|384432646|ref|YP_005642004.1|	-	1.1e-14	55.1	2.5	8.1e-13	49.0	2.4	3.3	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|384432646|ref|YP_005642004.1|	-	6.2e-08	32.0	0.0	3e-07	29.7	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.12	gi|384432646|ref|YP_005642004.1|	-	5e-07	28.7	0.1	0.0025	16.5	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|384432646|ref|YP_005642004.1|	-	2.6e-06	26.6	0.8	0.007	15.3	0.2	2.5	2	1	0	2	2	2	2	AAA-like	domain
AAA	PF00004.29	gi|384432646|ref|YP_005642004.1|	-	3.9e-06	27.3	0.5	0.0042	17.5	0.0	2.6	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|384432646|ref|YP_005642004.1|	-	1.9e-05	25.0	0.0	0.04	14.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
ResIII	PF04851.15	gi|384432646|ref|YP_005642004.1|	-	0.00019	21.5	0.1	0.15	12.0	0.0	2.3	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
FtsK_SpoIIIE	PF01580.18	gi|384432646|ref|YP_005642004.1|	-	0.0006	19.2	0.0	0.0011	18.3	0.0	1.4	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
Pox_A32	PF04665.12	gi|384432646|ref|YP_005642004.1|	-	0.0013	18.2	0.0	0.0028	17.1	0.0	1.5	1	0	0	1	1	1	1	Poxvirus	A32	protein
Zot	PF05707.12	gi|384432646|ref|YP_005642004.1|	-	0.015	14.9	0.0	0.043	13.5	0.0	1.7	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
TsaE	PF02367.17	gi|384432646|ref|YP_005642004.1|	-	0.018	15.0	0.0	0.04	13.9	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF2075	PF09848.9	gi|384432646|ref|YP_005642004.1|	-	0.032	13.5	0.0	0.79	8.9	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_7	PF12775.7	gi|384432646|ref|YP_005642004.1|	-	0.043	13.3	0.0	0.082	12.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DEAD	PF00270.29	gi|384432646|ref|YP_005642004.1|	-	0.092	12.5	0.0	2.3	8.0	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
ABC_tran	PF00005.27	gi|384432646|ref|YP_005642004.1|	-	0.17	12.4	0.0	0.53	10.8	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
4HBT	PF03061.22	gi|384432648|ref|YP_005642006.1|	-	5.6e-19	68.3	0.2	4.9e-08	33.2	0.0	2.3	2	0	0	2	2	2	2	Thioesterase	superfamily
4HBT_2	PF13279.6	gi|384432648|ref|YP_005642006.1|	-	0.00097	19.6	0.0	0.047	14.2	0.0	2.3	1	1	0	1	1	1	1	Thioesterase-like	superfamily
Exo_endo_phos	PF03372.23	gi|384432650|ref|YP_005642008.1|	-	2.6e-14	53.3	0.0	4.3e-14	52.6	0.0	1.4	1	1	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.6	gi|384432650|ref|YP_005642008.1|	-	9.6e-06	25.4	0.0	7.2e-05	22.6	0.0	2.4	2	1	0	2	2	2	1	Endonuclease-reverse	transcriptase
Pkinase	PF00069.25	gi|384432651|ref|YP_005642009.1|	-	1.8e-20	73.4	0.1	2.7e-20	72.8	0.1	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|384432651|ref|YP_005642009.1|	-	2.3e-09	36.9	0.0	3.5e-09	36.3	0.0	1.3	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Kdo	PF06293.14	gi|384432651|ref|YP_005642009.1|	-	0.017	14.5	0.0	0.028	13.8	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
AA_permease_2	PF13520.6	gi|384432652|ref|YP_005642010.1|	-	4.2e-16	58.8	59.1	5.4e-16	58.4	59.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
MHC2-interact	PF09307.10	gi|384432652|ref|YP_005642010.1|	-	0.86	9.6	2.0	15	5.7	0.0	2.6	3	0	0	3	3	3	0	CLIP,	MHC2	interacting
AA_permease	PF00324.21	gi|384432652|ref|YP_005642010.1|	-	4.5	5.7	56.7	0.37	9.3	50.9	2.2	2	1	0	2	2	2	0	Amino	acid	permease
HEPN	PF05168.14	gi|384432653|ref|YP_005642011.1|	-	1.3e-15	57.6	0.1	2.7e-15	56.5	0.0	1.5	2	0	0	2	2	2	1	HEPN	domain
4HBT_2	PF13279.6	gi|384432654|ref|YP_005642012.1|	-	1.7e-08	35.0	0.0	2.1e-08	34.7	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.22	gi|384432654|ref|YP_005642012.1|	-	2.2e-06	27.9	0.0	3.5e-06	27.3	0.0	1.3	1	1	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|384432654|ref|YP_005642012.1|	-	0.0021	17.4	0.2	0.0024	17.2	0.2	1.0	1	0	0	1	1	1	1	Acyl-ACP	thioesterase
TP_methylase	PF00590.20	gi|384432655|ref|YP_005642013.1|	-	8.9e-30	104.2	0.0	1.1e-29	103.9	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiG_N	PF11760.8	gi|384432656|ref|YP_005642014.1|	-	8.5e-28	96.2	0.1	1.8e-27	95.1	0.1	1.6	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|384432656|ref|YP_005642014.1|	-	2.8e-16	60.1	0.0	4.9e-16	59.3	0.0	1.4	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
TP_methylase	PF00590.20	gi|384432657|ref|YP_005642015.1|	-	6.5e-48	163.5	0.3	7.7e-48	163.2	0.3	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|384432658|ref|YP_005642016.1|	-	1.9e-35	122.7	0.0	2.3e-35	122.5	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Methyltransf_31	PF13847.6	gi|384432659|ref|YP_005642017.1|	-	1.8e-14	53.8	0.1	2.6e-14	53.3	0.1	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|384432659|ref|YP_005642017.1|	-	5e-13	49.3	0.1	6.6e-13	48.9	0.1	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|384432659|ref|YP_005642017.1|	-	1.4e-12	47.6	1.6	1.7e-12	47.3	1.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|384432659|ref|YP_005642017.1|	-	4.2e-11	43.4	0.0	6.3e-11	42.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|384432659|ref|YP_005642017.1|	-	3.4e-10	39.5	0.1	4.2e-10	39.2	0.1	1.1	1	0	0	1	1	1	1	O-methyltransferase
Ubie_methyltran	PF01209.18	gi|384432659|ref|YP_005642017.1|	-	1.2e-09	37.8	0.2	1.5e-09	37.5	0.2	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
CMAS	PF02353.20	gi|384432659|ref|YP_005642017.1|	-	2.3e-08	33.7	0.0	3.3e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
GCD14	PF08704.10	gi|384432659|ref|YP_005642017.1|	-	3.5e-08	33.4	0.0	4.4e-08	33.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltr_RsmB-F	PF01189.17	gi|384432659|ref|YP_005642017.1|	-	5.4e-08	32.7	0.0	3.6e-06	26.8	0.0	2.2	1	1	1	2	2	2	1	16S	rRNA	methyltransferase	RsmB/F
Methyltransf_24	PF13578.6	gi|384432659|ref|YP_005642017.1|	-	5.4e-08	33.8	0.0	7.2e-08	33.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384432659|ref|YP_005642017.1|	-	6.6e-08	32.3	0.0	1.3e-07	31.3	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|384432659|ref|YP_005642017.1|	-	1.2e-07	31.7	1.5	1.2e-07	31.7	0.5	1.5	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|384432659|ref|YP_005642017.1|	-	4.1e-07	29.7	0.1	8.2e-07	28.7	0.0	1.4	1	1	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_11	PF08241.12	gi|384432659|ref|YP_005642017.1|	-	1.7e-06	28.6	0.0	2.7e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|384432659|ref|YP_005642017.1|	-	1.9e-06	27.7	0.1	1.3e-05	24.9	0.1	2.0	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.15	gi|384432659|ref|YP_005642017.1|	-	8.6e-06	25.5	0.0	1.1e-05	25.2	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Fibrillarin	PF01269.17	gi|384432659|ref|YP_005642017.1|	-	3.5e-05	23.0	0.0	4.5e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_12	PF08242.12	gi|384432659|ref|YP_005642017.1|	-	0.00016	22.4	0.0	0.00028	21.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384432659|ref|YP_005642017.1|	-	0.00019	21.3	0.0	0.00025	20.9	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|384432659|ref|YP_005642017.1|	-	0.00032	20.2	0.2	0.0018	17.8	0.0	2.0	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_32	PF13679.6	gi|384432659|ref|YP_005642017.1|	-	0.00041	20.4	0.0	0.00054	20.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.13	gi|384432659|ref|YP_005642017.1|	-	0.00047	19.7	0.0	0.00078	19.0	0.0	1.3	1	0	0	1	1	1	1	Histone	methylation	protein	DOT1
FtsJ	PF01728.19	gi|384432659|ref|YP_005642017.1|	-	0.0018	18.4	0.0	0.011	15.8	0.0	2.0	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
TehB	PF03848.14	gi|384432659|ref|YP_005642017.1|	-	0.0023	17.4	0.1	0.0036	16.7	0.1	1.3	1	1	0	1	1	1	1	Tellurite	resistance	protein	TehB
N6_N4_Mtase	PF01555.18	gi|384432659|ref|YP_005642017.1|	-	0.0024	17.6	0.2	0.0046	16.7	0.0	1.5	2	0	0	2	2	2	1	DNA	methylase
N6_Mtase	PF02384.16	gi|384432659|ref|YP_005642017.1|	-	0.0072	15.6	0.0	0.01	15.1	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
TRM	PF02005.16	gi|384432659|ref|YP_005642017.1|	-	0.011	14.9	0.0	0.016	14.4	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
MetW	PF07021.12	gi|384432659|ref|YP_005642017.1|	-	0.03	13.9	0.1	0.038	13.6	0.1	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
RrnaAD	PF00398.20	gi|384432659|ref|YP_005642017.1|	-	0.032	13.3	0.0	0.048	12.7	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
NodS	PF05401.11	gi|384432659|ref|YP_005642017.1|	-	0.06	12.9	0.0	0.096	12.3	0.0	1.3	1	1	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_5	PF01795.19	gi|384432659|ref|YP_005642017.1|	-	0.12	11.9	0.0	5.3	6.5	0.0	2.0	1	1	1	2	2	2	0	MraW	methylase	family
DREV	PF05219.12	gi|384432659|ref|YP_005642017.1|	-	0.19	10.8	0.0	0.24	10.5	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
CbiD	PF01888.17	gi|384432660|ref|YP_005642018.1|	-	3.1e-72	242.9	4.3	4e-72	242.5	4.3	1.1	1	0	0	1	1	1	1	CbiD
SpoU_methylase	PF00588.19	gi|384432660|ref|YP_005642018.1|	-	0.031	14.5	0.0	0.063	13.4	0.0	1.5	1	0	0	1	1	1	0	SpoU	rRNA	Methylase	family
TP_methylase	PF00590.20	gi|384432661|ref|YP_005642019.1|	-	2.1e-39	135.7	0.1	2.7e-39	135.3	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Glyco_hydro_3_C	PF01915.22	gi|384432661|ref|YP_005642019.1|	-	0.0084	16.1	0.0	0.011	15.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
CbiC	PF02570.15	gi|384432662|ref|YP_005642020.1|	-	1.4e-49	168.4	2.1	1.9e-49	168.0	2.1	1.1	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
CbiX	PF01903.17	gi|384432662|ref|YP_005642020.1|	-	4.4e-22	78.4	0.0	7.5e-22	77.7	0.0	1.4	1	0	0	1	1	1	1	CbiX
CbiK	PF06180.11	gi|384432662|ref|YP_005642020.1|	-	0.034	13.5	0.0	0.045	13.1	0.0	1.2	1	0	0	1	1	1	0	Cobalt	chelatase	(CbiK)
Lipoprotein_22	PF17294.2	gi|384432664|ref|YP_005642022.1|	-	0.04	13.6	0.0	0.041	13.6	0.0	1.0	1	0	0	1	1	1	0	Uncharacterised	lipoprotein	family
DUF3463	PF11946.8	gi|384432665|ref|YP_005642023.1|	-	2.2e-33	114.9	1.2	3.6e-33	114.2	1.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3463)
Radical_SAM	PF04055.21	gi|384432665|ref|YP_005642023.1|	-	1.3e-17	64.6	0.0	2.5e-17	63.8	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384432665|ref|YP_005642023.1|	-	8.7e-09	35.8	0.2	1.7e-07	31.6	0.0	2.5	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384432665|ref|YP_005642023.1|	-	0.0022	18.1	0.3	0.028	14.5	0.0	2.6	3	0	0	3	3	3	1	4Fe-4S	single	cluster	domain
Lactamase_B	PF00753.27	gi|384432666|ref|YP_005642024.1|	-	1.9e-09	37.8	0.7	4.8e-09	36.5	0.7	1.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384432666|ref|YP_005642024.1|	-	0.026	14.1	0.2	0.058	12.9	0.2	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
HTH_5	PF01022.20	gi|384432666|ref|YP_005642024.1|	-	0.14	12.0	0.0	0.38	10.7	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Transposase_20	PF02371.16	gi|384432667|ref|YP_005642025.1|	-	1.5e-26	92.5	0.0	2.7e-26	91.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384432667|ref|YP_005642025.1|	-	2.1e-16	60.2	0.0	3.9e-16	59.3	0.0	1.4	1	0	0	1	1	1	1	Transposase
DUF16	PF01519.16	gi|384432668|ref|YP_005642026.1|	-	0.0056	17.1	3.7	0.0071	16.8	3.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
XPG_I_2	PF12813.7	gi|384432668|ref|YP_005642026.1|	-	0.036	13.6	0.3	0.041	13.4	0.3	1.2	1	0	0	1	1	1	0	XPG	domain	containing
Spore_III_AB	PF09548.10	gi|384432668|ref|YP_005642026.1|	-	0.28	11.3	5.5	2.8	8.0	2.2	2.1	1	1	1	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
T2SSF	PF00482.23	gi|384432669|ref|YP_005642027.1|	-	3.5e-11	43.1	1.8	1.7e-08	34.5	0.0	2.8	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF1016_N	PF17761.1	gi|384432669|ref|YP_005642027.1|	-	0.012	15.8	0.1	0.025	14.7	0.1	1.6	1	0	0	1	1	1	0	DUF1016	N-terminal	domain
T2SSE	PF00437.20	gi|384432670|ref|YP_005642028.1|	-	5.4e-45	153.6	0.0	8.1e-45	153.0	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|384432670|ref|YP_005642028.1|	-	0.0044	17.5	0.0	0.069	13.7	0.0	2.5	3	0	0	3	3	3	1	ABC	transporter
AAA_29	PF13555.6	gi|384432670|ref|YP_005642028.1|	-	0.015	15.0	0.0	0.029	14.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384432670|ref|YP_005642028.1|	-	0.03	14.8	1.0	0.05	14.1	0.2	1.8	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|384432670|ref|YP_005642028.1|	-	0.06	12.7	0.0	0.096	12.0	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|384432670|ref|YP_005642028.1|	-	0.11	12.7	0.0	0.28	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
VQ	PF05678.14	gi|384432670|ref|YP_005642028.1|	-	0.14	11.7	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	VQ	motif
DEAD	PF00270.29	gi|384432670|ref|YP_005642028.1|	-	0.15	11.8	0.0	0.26	11.0	0.0	1.3	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
DUF3300	PF11737.8	gi|384432670|ref|YP_005642028.1|	-	0.16	11.5	0.1	0.27	10.7	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3300)
ATPase	PF06745.13	gi|384432671|ref|YP_005642029.1|	-	2.4e-16	59.8	0.5	2.9e-16	59.5	0.5	1.0	1	0	0	1	1	1	1	KaiC
PAXNEB	PF05625.11	gi|384432671|ref|YP_005642029.1|	-	0.00039	19.7	0.9	0.34	10.0	0.0	2.1	1	1	1	2	2	2	2	PAXNEB	protein
AAA_25	PF13481.6	gi|384432671|ref|YP_005642029.1|	-	0.0014	18.2	0.0	0.0021	17.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|384432671|ref|YP_005642029.1|	-	0.0039	16.6	0.1	0.086	12.2	0.0	2.1	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_24	PF13479.6	gi|384432671|ref|YP_005642029.1|	-	0.012	15.4	0.3	0.021	14.5	0.1	1.5	2	0	0	2	2	2	0	AAA	domain
Rad51	PF08423.11	gi|384432671|ref|YP_005642029.1|	-	0.027	13.8	0.4	0.047	12.9	0.1	1.6	2	0	0	2	2	2	0	Rad51
AAA_14	PF13173.6	gi|384432671|ref|YP_005642029.1|	-	0.072	13.1	0.5	0.52	10.3	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|384432671|ref|YP_005642029.1|	-	0.081	12.2	0.1	0.14	11.4	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_33	PF13671.6	gi|384432671|ref|YP_005642029.1|	-	0.11	12.7	0.0	0.19	11.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|384432671|ref|YP_005642029.1|	-	0.11	12.5	0.0	0.19	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|384432671|ref|YP_005642029.1|	-	0.14	12.6	0.1	0.27	11.6	0.1	1.5	1	0	0	1	1	1	0	RNA	helicase
AAA_16	PF13191.6	gi|384432671|ref|YP_005642029.1|	-	0.17	12.2	0.0	0.42	11.0	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
Arch_flagellin	PF01917.16	gi|384432673|ref|YP_005642031.1|	-	9.1e-09	35.7	6.5	1.1e-08	35.5	6.5	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
Pilin_N	PF07790.11	gi|384432673|ref|YP_005642031.1|	-	0.087	13.8	9.6	0.26	12.2	9.6	1.7	1	1	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
PhoR	PF11808.8	gi|384432673|ref|YP_005642031.1|	-	0.15	12.5	0.0	0.25	11.8	0.0	1.3	1	0	0	1	1	1	0	Phosphate	regulon	sensor	protein	PhoR
FliJ	PF02050.16	gi|384432674|ref|YP_005642032.1|	-	0.023	14.9	2.4	0.096	12.9	2.4	1.9	1	1	0	1	1	1	0	Flagellar	FliJ	protein
RapA_C	PF12137.8	gi|384432674|ref|YP_005642032.1|	-	0.026	13.6	3.3	0.045	12.8	3.3	1.3	1	0	0	1	1	1	0	RNA	polymerase	recycling	family	C-terminal
DUF3450	PF11932.8	gi|384432674|ref|YP_005642032.1|	-	0.043	13.1	4.0	0.066	12.5	4.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Com_YlbF	PF06133.11	gi|384432674|ref|YP_005642032.1|	-	0.11	13.2	3.3	0.29	11.8	3.3	1.6	1	0	0	1	1	1	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
YlbD_coat	PF14071.6	gi|384432674|ref|YP_005642032.1|	-	0.41	10.9	3.2	0.77	10.0	3.2	1.4	1	0	0	1	1	1	0	Putative	coat	protein
Fib_alpha	PF08702.10	gi|384432674|ref|YP_005642032.1|	-	0.69	10.1	7.5	0.21	11.7	4.6	1.7	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Uds1	PF15456.6	gi|384432674|ref|YP_005642032.1|	-	0.78	9.9	4.6	2.3	8.4	0.3	2.2	1	1	1	2	2	2	0	Up-regulated	During	Septation
Arch_flagellin	PF01917.16	gi|384432675|ref|YP_005642033.1|	-	3.7e-19	69.5	7.0	5e-18	65.8	7.0	2.1	1	1	0	1	1	1	1	Archaebacterial	flagellin
DUF4190	PF13828.6	gi|384432675|ref|YP_005642033.1|	-	1.5	8.6	6.8	1.3	8.9	1.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4190)
DUF2871	PF11070.8	gi|384432676|ref|YP_005642034.1|	-	0.033	14.5	0.4	1.9	8.8	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2871)
DDE_Tnp_1	PF01609.21	gi|384432679|ref|YP_005642037.1|	-	1.8e-16	60.5	0.0	2.3e-16	60.1	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
HTH_27	PF13463.6	gi|384432680|ref|YP_005642038.1|	-	0.18	12.3	0.0	0.21	12.1	0.0	1.2	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384432681|ref|YP_005642039.1|	-	9.6e-12	44.3	0.1	1.1e-05	24.9	0.1	2.6	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|384432681|ref|YP_005642039.1|	-	1.6e-09	37.5	0.0	4.2e-06	26.5	0.0	2.4	2	0	0	2	2	2	2	MarR	family
TrmB	PF01978.19	gi|384432681|ref|YP_005642039.1|	-	2e-07	30.8	0.3	0.006	16.4	0.0	2.5	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|384432681|ref|YP_005642039.1|	-	3e-06	27.1	4.9	0.00023	21.1	0.1	2.6	2	1	0	2	2	2	2	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|384432681|ref|YP_005642039.1|	-	3e-06	27.6	0.0	9.7e-06	26.0	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|384432681|ref|YP_005642039.1|	-	1e-05	25.3	0.0	9.3e-05	22.3	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|384432681|ref|YP_005642039.1|	-	1.2e-05	25.2	0.3	0.063	13.2	0.0	2.4	2	0	0	2	2	2	2	HTH	domain
HTH_5	PF01022.20	gi|384432681|ref|YP_005642039.1|	-	4.2e-05	23.3	0.0	0.025	14.5	0.0	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_7	PF02796.15	gi|384432681|ref|YP_005642039.1|	-	0.00055	19.9	0.1	0.017	15.2	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_DeoR	PF08220.12	gi|384432681|ref|YP_005642039.1|	-	0.00075	19.2	0.0	0.11	12.3	0.0	2.5	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
FaeA	PF04703.12	gi|384432681|ref|YP_005642039.1|	-	0.0018	18.6	0.1	0.83	10.1	0.1	2.6	2	1	0	2	2	2	1	FaeA-like	protein
HTH_10	PF04967.12	gi|384432681|ref|YP_005642039.1|	-	0.0023	17.7	0.1	0.056	13.3	0.0	2.3	2	0	0	2	2	2	1	HTH	DNA	binding	domain
UPF0122	PF04297.14	gi|384432681|ref|YP_005642039.1|	-	0.0028	17.9	0.9	0.011	15.9	0.1	2.1	2	0	0	2	2	2	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_AsnC-type	PF13404.6	gi|384432681|ref|YP_005642039.1|	-	0.0097	15.7	0.0	2.8	7.9	0.0	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|384432681|ref|YP_005642039.1|	-	0.014	15.5	0.0	0.44	10.6	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|384432681|ref|YP_005642039.1|	-	0.016	14.7	2.7	0.017	14.7	0.1	2.4	3	0	0	3	3	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_36	PF13730.6	gi|384432681|ref|YP_005642039.1|	-	0.018	15.0	0.2	1	9.4	0.0	2.9	3	0	0	3	3	2	0	Helix-turn-helix	domain
FeoC	PF09012.10	gi|384432681|ref|YP_005642039.1|	-	0.021	14.9	0.1	0.92	9.6	0.1	2.2	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
Rio2_N	PF09202.11	gi|384432681|ref|YP_005642039.1|	-	0.022	15.0	0.5	3.2	8.0	0.1	2.3	2	0	0	2	2	2	0	Rio2,	N-terminal
HTH_23	PF13384.6	gi|384432681|ref|YP_005642039.1|	-	0.024	14.4	0.0	0.068	13.0	0.0	1.8	2	0	0	2	2	1	0	Homeodomain-like	domain
MerR_1	PF13411.6	gi|384432681|ref|YP_005642039.1|	-	0.038	14.1	0.1	0.11	12.6	0.0	1.9	2	0	0	2	2	1	0	MerR	HTH	family	regulatory	protein
HTH_Mga	PF08280.11	gi|384432681|ref|YP_005642039.1|	-	0.046	13.7	0.3	1.5	8.9	0.1	2.5	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Sigma70_r4_2	PF08281.12	gi|384432681|ref|YP_005642039.1|	-	0.052	13.2	0.4	0.28	10.9	0.0	2.4	3	0	0	3	3	3	0	Sigma-70,	region	4
DUF2089	PF09862.9	gi|384432681|ref|YP_005642039.1|	-	0.071	13.1	0.8	0.68	10.0	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2089)
Rrf2	PF02082.20	gi|384432681|ref|YP_005642039.1|	-	0.08	13.3	0.0	2.4	8.6	0.0	2.5	2	0	0	2	2	2	0	Transcriptional	regulator
RPA_C	PF08784.11	gi|384432681|ref|YP_005642039.1|	-	0.11	13.2	0.2	2	9.1	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
MerR	PF00376.23	gi|384432681|ref|YP_005642039.1|	-	0.12	12.2	0.2	0.43	10.4	0.0	2.1	3	0	0	3	3	2	0	MerR	family	regulatory	protein
HTH_17	PF12728.7	gi|384432681|ref|YP_005642039.1|	-	0.13	12.4	1.1	0.42	10.8	0.3	2.4	2	1	0	2	2	2	0	Helix-turn-helix	domain
Mrr_N	PF14338.6	gi|384432681|ref|YP_005642039.1|	-	0.14	12.3	0.1	0.56	10.4	0.0	2.1	2	1	0	2	2	1	0	Mrr	N-terminal	domain
SdpI	PF13630.6	gi|384432683|ref|YP_005642041.1|	-	0.23	11.6	2.5	0.35	11.0	2.5	1.2	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
RHH_1	PF01402.21	gi|384432684|ref|YP_005642042.1|	-	2.4e-06	27.3	0.0	3.2e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|384432684|ref|YP_005642042.1|	-	0.0011	19.1	0.0	0.0013	18.9	0.0	1.1	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
HMA	PF00403.26	gi|384432684|ref|YP_005642042.1|	-	0.061	13.8	1.0	0.098	13.1	1.0	1.4	1	0	0	1	1	1	0	Heavy-metal-associated	domain
Type2_restr_D3	PF16902.5	gi|384432684|ref|YP_005642042.1|	-	0.065	13.2	0.4	0.094	12.6	0.3	1.3	1	1	0	1	1	1	0	Type-2	restriction	enzyme	D3	domain
HTH_18	PF12833.7	gi|384432684|ref|YP_005642042.1|	-	0.074	13.3	0.0	0.085	13.1	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
RNA_GG_bind	PF10258.9	gi|384432684|ref|YP_005642042.1|	-	0.099	12.7	0.1	0.26	11.4	0.0	1.7	1	1	1	2	2	2	0	PHAX	RNA-binding	domain
CbiA	PF01656.23	gi|384432685|ref|YP_005642043.1|	-	7e-09	35.8	0.0	1.2e-08	35.0	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|384432685|ref|YP_005642043.1|	-	1.8e-08	34.5	1.6	4.3e-08	33.3	0.3	2.4	2	1	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|384432685|ref|YP_005642043.1|	-	8.3e-07	28.7	0.0	1.2e-06	28.2	0.0	1.3	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|384432685|ref|YP_005642043.1|	-	2.7e-05	23.5	0.1	0.00012	21.4	0.0	2.0	2	0	0	2	2	2	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|384432685|ref|YP_005642043.1|	-	0.00042	19.9	0.0	0.00062	19.3	0.0	1.5	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
CLP1_P	PF16575.5	gi|384432685|ref|YP_005642043.1|	-	0.0079	16.0	0.0	0.018	14.9	0.0	1.5	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
ATPase	PF06745.13	gi|384432685|ref|YP_005642043.1|	-	0.029	13.7	0.0	0.052	12.9	0.0	1.5	1	1	0	1	1	1	0	KaiC
SRP54	PF00448.22	gi|384432685|ref|YP_005642043.1|	-	0.035	13.7	0.1	0.15	11.7	0.0	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MipZ	PF09140.11	gi|384432685|ref|YP_005642043.1|	-	0.045	13.0	0.0	0.057	12.7	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|384432685|ref|YP_005642043.1|	-	0.095	12.1	0.1	0.22	10.9	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_14	PF13173.6	gi|384432685|ref|YP_005642043.1|	-	0.12	12.4	0.1	0.45	10.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|384432685|ref|YP_005642043.1|	-	0.18	11.5	0.1	0.36	10.5	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
DDE_Tnp_1	PF01609.21	gi|384432686|ref|YP_005642044.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
CbiA	PF01656.23	gi|384432687|ref|YP_005642045.1|	-	2.1e-09	37.5	0.0	4.2e-09	36.5	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|384432687|ref|YP_005642045.1|	-	2e-05	24.2	0.0	3.1e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|384432687|ref|YP_005642045.1|	-	0.00018	21.5	2.3	0.00077	19.4	1.1	2.3	2	1	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|384432687|ref|YP_005642045.1|	-	0.00027	20.3	0.0	0.00046	19.5	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|384432687|ref|YP_005642045.1|	-	0.0013	18.0	0.2	0.0037	16.5	0.2	1.9	1	1	0	1	1	1	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|384432687|ref|YP_005642045.1|	-	0.039	13.4	0.0	0.064	12.7	0.0	1.3	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsQ
AAA_26	PF13500.6	gi|384432687|ref|YP_005642045.1|	-	0.056	13.3	0.2	0.19	11.5	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
ResIII	PF04851.15	gi|384432687|ref|YP_005642045.1|	-	0.17	11.9	0.6	0.41	10.6	0.2	1.8	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Zeta_toxin	PF06414.12	gi|384432687|ref|YP_005642045.1|	-	0.2	10.9	0.0	0.33	10.2	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_33	PF13671.6	gi|384432687|ref|YP_005642045.1|	-	0.24	11.5	0.0	0.37	11.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
ADH_N	PF08240.12	gi|384432688|ref|YP_005642046.1|	-	1.2e-25	89.5	0.2	2.7e-25	88.4	0.0	1.7	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384432688|ref|YP_005642046.1|	-	2.2e-25	89.1	0.3	4.4e-25	88.2	0.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384432688|ref|YP_005642046.1|	-	4.1e-09	37.6	0.0	6.6e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Rhodanese	PF00581.20	gi|384432688|ref|YP_005642046.1|	-	0.00084	19.8	0.0	1.7	9.2	0.0	3.0	3	0	0	3	3	3	2	Rhodanese-like	domain
SIS_2	PF13580.6	gi|384432688|ref|YP_005642046.1|	-	0.0024	17.9	0.2	0.15	12.0	0.0	2.8	3	0	0	3	3	3	1	SIS	domain
DapB_N	PF01113.20	gi|384432688|ref|YP_005642046.1|	-	0.066	13.3	0.6	1.9	8.6	0.6	2.5	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
ParA	PF10609.9	gi|384432690|ref|YP_005642048.1|	-	2.4e-10	40.3	0.0	7.8e-10	38.6	0.0	1.7	1	1	1	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|384432690|ref|YP_005642048.1|	-	7.3e-10	39.0	0.0	1.1e-09	38.4	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|384432690|ref|YP_005642048.1|	-	1e-09	38.6	0.5	4.4e-08	33.2	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|384432690|ref|YP_005642048.1|	-	4.9e-07	29.2	0.6	1.4e-05	24.4	0.0	2.3	2	1	1	3	3	3	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|384432690|ref|YP_005642048.1|	-	9.2e-05	22.0	0.0	0.001	18.6	0.1	2.0	1	1	1	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
AAA_24	PF13479.6	gi|384432690|ref|YP_005642048.1|	-	0.002	17.9	0.1	0.0033	17.2	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.20	gi|384432690|ref|YP_005642048.1|	-	0.0035	17.2	0.0	0.0055	16.6	0.0	1.2	1	0	0	1	1	1	1	Adenylylsulphate	kinase
VirC1	PF07015.11	gi|384432690|ref|YP_005642048.1|	-	0.01	15.2	0.1	0.027	13.8	0.0	1.7	1	1	0	1	1	1	0	VirC1	protein
IstB_IS21	PF01695.17	gi|384432690|ref|YP_005642048.1|	-	0.014	15.1	0.0	0.021	14.5	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
DUF815	PF05673.13	gi|384432690|ref|YP_005642048.1|	-	0.015	14.5	0.1	0.023	13.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
MipZ	PF09140.11	gi|384432690|ref|YP_005642048.1|	-	0.023	14.0	0.0	0.03	13.6	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
SRP54	PF00448.22	gi|384432690|ref|YP_005642048.1|	-	0.094	12.3	0.0	0.17	11.5	0.0	1.6	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
adh_short_C2	PF13561.6	gi|384432690|ref|YP_005642048.1|	-	0.13	11.8	0.0	0.23	11.0	0.0	1.4	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
AAA_26	PF13500.6	gi|384432690|ref|YP_005642048.1|	-	0.2	11.5	0.1	0.39	10.5	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
MFS_1	PF07690.16	gi|384432691|ref|YP_005642049.1|	-	0.053	12.5	47.9	0.64	8.9	48.0	2.5	1	1	0	1	1	1	0	Major	Facilitator	Superfamily
eRF1_2	PF03464.15	gi|384432692|ref|YP_005642050.1|	-	3.4e-47	160.1	0.0	5.9e-47	159.3	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|384432692|ref|YP_005642050.1|	-	1.1e-21	77.4	3.8	2.5e-21	76.2	1.1	2.6	2	2	0	2	2	2	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|384432692|ref|YP_005642050.1|	-	1.7e-11	44.5	0.0	4.8e-11	43.1	0.0	1.7	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|384432692|ref|YP_005642050.1|	-	1.4e-09	38.4	0.0	2.6e-09	37.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|384432692|ref|YP_005642050.1|	-	0.00028	20.9	0.0	0.00055	20.0	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	1
SpoU_sub_bind	PF08032.12	gi|384432692|ref|YP_005642050.1|	-	0.018	15.3	0.2	0.053	13.8	0.2	1.8	1	0	0	1	1	1	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
NSP16	PF06460.12	gi|384432692|ref|YP_005642050.1|	-	0.029	13.5	0.0	0.083	12.0	0.0	1.7	2	0	0	2	2	2	0	Coronavirus	NSP16
Ribosomal_L7Ae	PF01248.26	gi|384432692|ref|YP_005642050.1|	-	0.029	14.1	0.2	0.058	13.1	0.2	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
IGPS	PF00218.21	gi|384432692|ref|YP_005642050.1|	-	0.059	12.5	0.1	0.099	11.8	0.1	1.4	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
Pribosyltran	PF00156.27	gi|384432693|ref|YP_005642051.1|	-	1.6e-17	63.5	0.0	2.7e-17	62.8	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|384432693|ref|YP_005642051.1|	-	0.00012	21.6	0.0	0.00016	21.2	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
SAB	PF04382.13	gi|384432693|ref|YP_005642051.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.4	1	0	0	1	1	1	0	SAB	domain
PNP_UDP_1	PF01048.20	gi|384432694|ref|YP_005642052.1|	-	7.8e-49	166.0	0.0	8.9e-49	165.9	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF4899	PF16240.5	gi|384432695|ref|YP_005642053.1|	-	0.0088	15.3	0.2	0.015	14.5	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4899)
polyprenyl_synt	PF00348.17	gi|384432696|ref|YP_005642054.1|	-	3.6e-32	111.4	1.2	5e-32	111.0	1.2	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
RimK	PF08443.11	gi|384432697|ref|YP_005642055.1|	-	2e-30	105.8	0.0	2.9e-30	105.3	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|384432697|ref|YP_005642055.1|	-	7.3e-12	45.0	0.1	1.1e-11	44.4	0.1	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|384432697|ref|YP_005642055.1|	-	2.6e-07	30.8	0.1	1.1e-06	28.8	0.0	1.9	2	0	0	2	2	2	1	ATP-grasp	domain
Rimk_N	PF18030.1	gi|384432697|ref|YP_005642055.1|	-	5.4e-06	26.7	0.1	1.2e-05	25.6	0.1	1.6	1	0	0	1	1	1	1	RimK	PreATP-grasp	domain
ATPgrasp_YheCD	PF14398.6	gi|384432697|ref|YP_005642055.1|	-	2.1e-05	23.9	0.0	0.0031	16.8	0.0	2.8	1	1	1	2	2	2	1	YheC/D	like	ATP-grasp
ATPgrasp_ST	PF14397.6	gi|384432697|ref|YP_005642055.1|	-	3.3e-05	23.3	0.0	0.12	11.5	0.0	3.1	1	1	2	3	3	3	2	Sugar-transfer	associated	ATP-grasp
Ins134_P3_kin	PF05770.11	gi|384432697|ref|YP_005642055.1|	-	0.00062	19.3	0.2	0.014	14.9	0.0	2.2	1	1	1	2	2	2	1	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
Synapsin_C	PF02750.14	gi|384432697|ref|YP_005642055.1|	-	0.038	13.5	0.0	0.062	12.8	0.0	1.3	1	0	0	1	1	1	0	Synapsin,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|384432697|ref|YP_005642055.1|	-	0.052	13.0	0.0	3.8	6.9	0.0	2.5	3	0	0	3	3	3	0	ATP-grasp	domain
RIO1	PF01163.22	gi|384432697|ref|YP_005642055.1|	-	0.12	12.0	0.1	0.2	11.3	0.1	1.3	1	0	0	1	1	1	0	RIO1	family
HTH_AsnC-type	PF13404.6	gi|384432698|ref|YP_005642056.1|	-	1.5e-17	63.1	0.3	2.7e-17	62.3	0.3	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|384432698|ref|YP_005642056.1|	-	4.9e-17	61.2	0.9	1e-16	60.2	0.9	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|384432698|ref|YP_005642056.1|	-	4.9e-16	58.5	0.1	7e-16	58.0	0.1	1.2	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_11	PF08279.12	gi|384432698|ref|YP_005642056.1|	-	1.9e-08	34.1	0.1	4.8e-08	32.8	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
NapD	PF03927.13	gi|384432698|ref|YP_005642056.1|	-	0.0003	20.8	0.0	0.00048	20.1	0.0	1.3	1	0	0	1	1	1	1	NapD	protein
MarR	PF01047.22	gi|384432698|ref|YP_005642056.1|	-	0.002	18.0	0.2	0.0064	16.4	0.1	1.8	2	1	1	3	3	1	1	MarR	family
HTH_5	PF01022.20	gi|384432698|ref|YP_005642056.1|	-	0.0021	17.9	0.3	0.0051	16.7	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.6	gi|384432698|ref|YP_005642056.1|	-	0.0026	17.9	0.0	0.005	17.0	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Transcrip_reg	PF01709.20	gi|384432698|ref|YP_005642056.1|	-	0.0035	16.8	0.2	0.049	13.0	0.0	1.9	1	1	1	2	2	2	1	Transcriptional	regulator
HTH_Mga	PF08280.11	gi|384432698|ref|YP_005642056.1|	-	0.0038	17.2	0.0	0.0078	16.2	0.0	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_28	PF13518.6	gi|384432698|ref|YP_005642056.1|	-	0.0053	16.9	0.0	0.0083	16.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|384432698|ref|YP_005642056.1|	-	0.0058	16.6	0.0	0.045	13.7	0.0	2.1	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|384432698|ref|YP_005642056.1|	-	0.0068	16.2	0.0	0.015	15.0	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|384432698|ref|YP_005642056.1|	-	0.016	15.0	0.1	0.053	13.3	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
ACT_4	PF13291.6	gi|384432698|ref|YP_005642056.1|	-	0.018	15.6	0.1	0.18	12.4	0.0	2.3	1	1	1	2	2	2	0	ACT	domain
TrmB	PF01978.19	gi|384432698|ref|YP_005642056.1|	-	0.022	14.7	0.3	0.084	12.8	0.1	2.2	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Mga	PF05043.13	gi|384432698|ref|YP_005642056.1|	-	0.028	15.0	0.1	0.052	14.1	0.1	1.5	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384432698|ref|YP_005642056.1|	-	0.037	14.2	0.1	0.25	11.6	0.0	2.2	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
LPD14	PF18827.1	gi|384432698|ref|YP_005642056.1|	-	0.08	13.2	0.1	1.3	9.3	0.0	2.4	1	1	1	2	2	2	0	Large	polyvalent	protein-associated	domain	14
MarR_2	PF12802.7	gi|384432698|ref|YP_005642056.1|	-	0.082	12.8	0.0	0.19	11.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|384432698|ref|YP_005642056.1|	-	0.087	13.3	0.0	0.24	11.9	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
AsnC_trans_reg2	PF17805.1	gi|384432698|ref|YP_005642056.1|	-	0.099	12.8	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	AsnC-like	ligand	binding	domain
HTH_20	PF12840.7	gi|384432698|ref|YP_005642056.1|	-	0.099	12.7	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|384432698|ref|YP_005642056.1|	-	0.11	12.6	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_8	PF02954.19	gi|384432698|ref|YP_005642056.1|	-	0.11	12.3	0.1	0.21	11.4	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
Pyr_redox_2	PF07992.14	gi|384432699|ref|YP_005642057.1|	-	8.1e-07	28.5	0.0	1.8e-06	27.4	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|384432699|ref|YP_005642057.1|	-	1e-05	25.6	0.0	3.2e-05	24.1	0.0	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|384432699|ref|YP_005642057.1|	-	3.7e-05	23.5	0.0	0.0024	17.5	0.0	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384432699|ref|YP_005642057.1|	-	8.2e-05	22.0	0.7	0.26	10.5	0.2	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384432699|ref|YP_005642057.1|	-	0.0013	17.5	0.0	0.024	13.4	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|384432699|ref|YP_005642057.1|	-	0.006	15.9	0.0	0.0085	15.4	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|384432699|ref|YP_005642057.1|	-	0.017	14.4	0.1	0.041	13.1	0.0	1.6	2	0	0	2	2	2	0	Thi4	family
NAD_binding_9	PF13454.6	gi|384432699|ref|YP_005642057.1|	-	0.025	14.6	0.0	1.7	8.6	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|384432699|ref|YP_005642057.1|	-	0.028	15.0	0.0	0.082	13.5	0.0	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|384432699|ref|YP_005642057.1|	-	0.15	11.0	0.0	0.25	10.3	0.0	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
DUF1275	PF06912.11	gi|384432700|ref|YP_005642058.1|	-	0.1	12.5	8.8	0.17	11.8	8.6	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1275)
CPP1-like	PF11833.8	gi|384432700|ref|YP_005642058.1|	-	8	6.1	8.1	7.7	6.1	0.2	2.2	1	1	1	2	2	2	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
Asparaginase_2	PF01112.18	gi|384432701|ref|YP_005642059.1|	-	6.9e-65	219.1	9.9	1.9e-42	145.4	3.9	2.0	1	1	1	2	2	2	2	Asparaginase
Metallophos_2	PF12850.7	gi|384432702|ref|YP_005642060.1|	-	3.6e-05	24.0	0.0	4.1e-05	23.8	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
CCB1	PF12046.8	gi|384432702|ref|YP_005642060.1|	-	0.082	12.3	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
Lipl32	PF12103.8	gi|384432704|ref|YP_005642062.1|	-	0.083	12.5	0.1	0.11	12.2	0.1	1.2	1	0	0	1	1	1	0	Surface	lipoprotein	of	Spirochaetales	order
DAO	PF01266.24	gi|384432705|ref|YP_005642063.1|	-	6.3e-10	39.2	0.0	0.00036	20.2	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|384432705|ref|YP_005642063.1|	-	4.2e-07	29.4	0.0	0.005	16.0	0.0	2.3	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|384432705|ref|YP_005642063.1|	-	1.9e-06	27.4	0.2	0.00012	21.4	0.2	2.8	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384432705|ref|YP_005642063.1|	-	0.0003	20.1	0.0	0.0009	18.6	0.0	1.9	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|384432705|ref|YP_005642063.1|	-	0.0011	18.1	0.0	0.023	13.8	0.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|384432705|ref|YP_005642063.1|	-	0.0022	18.2	0.0	0.0082	16.4	0.0	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|384432705|ref|YP_005642063.1|	-	0.0023	17.0	0.2	0.0099	15.0	0.2	1.9	1	1	0	1	1	1	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.7	gi|384432705|ref|YP_005642063.1|	-	0.015	14.7	0.1	0.1	11.9	0.1	2.1	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|384432705|ref|YP_005642063.1|	-	0.027	13.7	0.0	0.11	11.7	0.0	2.0	2	0	0	2	2	2	0	Thi4	family
GDI	PF00996.18	gi|384432705|ref|YP_005642063.1|	-	0.036	12.6	0.0	0.096	11.2	0.0	1.7	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
DUF1188	PF06690.11	gi|384432705|ref|YP_005642063.1|	-	0.054	13.0	0.0	5	6.6	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1188)
ApbA	PF02558.16	gi|384432705|ref|YP_005642063.1|	-	0.16	11.6	0.0	0.36	10.5	0.0	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DUF2070	PF09843.9	gi|384432706|ref|YP_005642064.1|	-	1.6e-106	356.8	12.6	1.9e-106	356.6	12.6	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Hydrolase_6	PF13344.6	gi|384432708|ref|YP_005642066.1|	-	7.5e-24	83.8	0.0	1.6e-23	82.8	0.0	1.5	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|384432708|ref|YP_005642066.1|	-	9.6e-17	60.8	0.0	2e-16	59.8	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD_2	PF13419.6	gi|384432708|ref|YP_005642066.1|	-	1.5e-05	25.1	0.2	0.00033	20.8	0.0	2.5	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384432708|ref|YP_005642066.1|	-	0.00065	20.0	0.0	0.0031	17.8	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|384432708|ref|YP_005642066.1|	-	0.0035	17.0	0.3	0.038	13.6	0.1	2.3	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.12	gi|384432708|ref|YP_005642066.1|	-	0.017	14.9	0.2	0.03	14.0	0.0	1.6	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
YhfZ_C	PF14503.6	gi|384432708|ref|YP_005642066.1|	-	0.031	13.8	0.0	0.053	13.1	0.0	1.3	1	0	0	1	1	1	0	YhfZ	C-terminal	domain
QSOX_Trx1	PF18108.1	gi|384432708|ref|YP_005642066.1|	-	0.075	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	QSOX	Trx-like	domain
FAD_binding_2	PF00890.24	gi|384432709|ref|YP_005642067.1|	-	1.3e-109	367.1	0.2	1.6e-109	366.8	0.2	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|384432709|ref|YP_005642067.1|	-	1.2e-42	144.9	0.0	2.1e-42	144.1	0.0	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
DAO	PF01266.24	gi|384432709|ref|YP_005642067.1|	-	1.2e-07	31.7	0.6	1.7e-06	27.9	0.5	2.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|384432709|ref|YP_005642067.1|	-	1.7e-05	23.7	0.3	0.00028	19.7	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|384432709|ref|YP_005642067.1|	-	0.00013	21.4	0.1	0.00019	20.8	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384432709|ref|YP_005642067.1|	-	0.00017	20.9	0.1	0.00062	19.1	0.1	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|384432709|ref|YP_005642067.1|	-	0.00051	19.4	0.8	0.0058	15.9	0.3	2.6	3	0	0	3	3	3	1	Thi4	family
GIDA	PF01134.22	gi|384432709|ref|YP_005642067.1|	-	0.00053	19.2	3.9	0.0076	15.4	2.7	2.2	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|384432709|ref|YP_005642067.1|	-	0.0013	18.9	1.0	0.0039	17.4	1.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|384432709|ref|YP_005642067.1|	-	0.015	14.3	0.2	0.026	13.6	0.2	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|384432709|ref|YP_005642067.1|	-	0.095	13.3	1.5	0.43	11.2	1.5	2.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|384432709|ref|YP_005642067.1|	-	0.38	10.0	2.3	0.64	9.3	2.3	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Fer2_3	PF13085.6	gi|384432710|ref|YP_005642068.1|	-	7e-33	112.9	0.0	1.4e-32	112.0	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|384432710|ref|YP_005642068.1|	-	4e-10	40.0	2.6	4e-10	40.0	2.6	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384432710|ref|YP_005642068.1|	-	4.8e-10	39.9	4.4	4.8e-10	39.9	4.4	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384432710|ref|YP_005642068.1|	-	2.4e-09	37.2	14.9	3.7e-08	33.4	6.4	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384432710|ref|YP_005642068.1|	-	1.3e-06	29.2	4.7	1.3e-06	29.2	4.7	2.7	2	1	1	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|384432710|ref|YP_005642068.1|	-	3e-06	27.4	1.1	0.019	15.1	0.1	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384432710|ref|YP_005642068.1|	-	3.4e-06	27.1	18.6	4.8e-05	23.4	10.1	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384432710|ref|YP_005642068.1|	-	0.0004	20.1	20.6	0.0069	16.2	2.3	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384432710|ref|YP_005642068.1|	-	0.00044	20.8	17.0	0.0078	16.7	9.9	2.9	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384432710|ref|YP_005642068.1|	-	0.00071	19.5	16.5	0.0015	18.5	1.2	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|384432710|ref|YP_005642068.1|	-	0.00075	20.2	2.2	1.1	10.1	0.3	2.7	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer2	PF00111.27	gi|384432710|ref|YP_005642068.1|	-	0.035	14.1	0.5	0.035	14.1	0.5	2.1	2	1	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_3	PF12798.7	gi|384432710|ref|YP_005642068.1|	-	0.043	14.8	2.7	0.043	14.8	2.7	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|384432710|ref|YP_005642068.1|	-	0.045	14.6	4.2	0.97	10.3	0.1	2.9	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384432710|ref|YP_005642068.1|	-	0.096	13.2	0.6	0.096	13.2	0.6	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384432710|ref|YP_005642068.1|	-	0.43	10.7	17.9	0.12	12.6	10.6	2.8	2	2	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|384432710|ref|YP_005642068.1|	-	0.75	10.4	12.2	1.3	9.6	3.9	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_6	PF12837.7	gi|384432710|ref|YP_005642068.1|	-	4	7.7	22.1	0.26	11.4	3.4	3.0	3	0	0	3	3	3	0	4Fe-4S	binding	domain
CCG	PF02754.16	gi|384432711|ref|YP_005642069.1|	-	1e-32	112.1	0.3	1.6e-16	60.3	0.1	2.2	2	0	0	2	2	2	2	Cysteine-rich	domain
VWA	PF00092.28	gi|384432713|ref|YP_005642071.1|	-	2.4e-09	37.7	0.2	5.1e-08	33.3	0.0	2.6	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|384432713|ref|YP_005642071.1|	-	3.6e-06	27.0	0.0	9.2e-06	25.7	0.0	1.7	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|384432713|ref|YP_005642071.1|	-	6.1e-06	26.8	0.1	0.00042	20.9	0.0	3.1	2	1	1	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|384432713|ref|YP_005642071.1|	-	8.8e-05	22.0	0.0	0.0002	20.8	0.0	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Rpp20	PF12328.8	gi|384432713|ref|YP_005642071.1|	-	0.013	15.5	2.7	0.024	14.6	2.7	1.4	1	0	0	1	1	1	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
Annexin	PF00191.20	gi|384432713|ref|YP_005642071.1|	-	0.066	13.3	0.3	0.23	11.6	0.1	2.1	2	0	0	2	2	2	0	Annexin
Baculo_p24	PF05073.12	gi|384432713|ref|YP_005642071.1|	-	0.088	12.6	3.8	0.18	11.6	3.8	1.4	1	0	0	1	1	1	0	Baculovirus	P24	capsid	protein
CSN5_C	PF18323.1	gi|384432713|ref|YP_005642071.1|	-	0.5	11.3	4.7	1.5	9.8	4.7	1.9	1	0	0	1	1	1	0	Cop9	signalosome	subunit	5	C-terminal	domain
AAA_5	PF07728.14	gi|384432714|ref|YP_005642072.1|	-	5e-29	101.1	0.0	1.2e-28	99.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_lid_8	PF17868.1	gi|384432714|ref|YP_005642072.1|	-	2.4e-08	33.8	0.5	7.6e-08	32.1	0.1	2.1	2	0	0	2	2	2	1	AAA	lid	domain
AAA_3	PF07726.11	gi|384432714|ref|YP_005642072.1|	-	2.3e-05	24.3	0.0	3.4e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|384432714|ref|YP_005642072.1|	-	5.1e-05	22.8	0.1	0.00049	19.6	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|384432714|ref|YP_005642072.1|	-	5.4e-05	23.6	0.3	0.00029	21.3	0.1	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|384432714|ref|YP_005642072.1|	-	0.00017	22.0	0.1	0.00097	19.6	0.0	2.4	3	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|384432714|ref|YP_005642072.1|	-	0.00063	20.0	0.0	0.0037	17.5	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|384432714|ref|YP_005642072.1|	-	0.00072	19.3	0.0	0.0017	18.1	0.0	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|384432714|ref|YP_005642072.1|	-	0.0023	17.1	0.0	0.0044	16.1	0.0	1.4	1	0	0	1	1	1	1	MCM	P-loop	domain
IstB_IS21	PF01695.17	gi|384432714|ref|YP_005642072.1|	-	0.012	15.4	0.0	0.022	14.5	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
EF-hand_14	PF17959.1	gi|384432714|ref|YP_005642072.1|	-	0.013	15.8	0.2	5.1	7.5	0.0	2.5	2	0	0	2	2	2	0	EF-hand	domain
AAA_7	PF12775.7	gi|384432714|ref|YP_005642072.1|	-	0.023	14.2	0.0	0.039	13.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_33	PF13671.6	gi|384432714|ref|YP_005642072.1|	-	0.039	14.1	0.0	0.12	12.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
YkyA	PF10368.9	gi|384432714|ref|YP_005642072.1|	-	0.053	13.2	4.7	0.034	13.8	1.8	2.0	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
AAA_30	PF13604.6	gi|384432714|ref|YP_005642072.1|	-	0.053	13.2	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RuvB_N	PF05496.12	gi|384432714|ref|YP_005642072.1|	-	0.093	12.5	0.4	0.56	9.9	0.1	2.4	2	1	0	2	2	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DUF2175	PF09943.9	gi|384432714|ref|YP_005642072.1|	-	7.1	7.0	6.5	14	6.1	1.0	3.2	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
tRNA_anti-codon	PF01336.25	gi|384432715|ref|YP_005642073.1|	-	1.9e-06	27.8	0.6	2.6e-06	27.3	0.6	1.2	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|384432715|ref|YP_005642073.1|	-	0.00011	22.1	0.7	0.00015	21.7	0.7	1.1	1	0	0	1	1	1	1	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|384432715|ref|YP_005642073.1|	-	0.05	13.3	0.0	0.055	13.2	0.0	1.1	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
PqqD	PF05402.12	gi|384432716|ref|YP_005642074.1|	-	1e-12	48.1	0.2	1.5e-12	47.6	0.2	1.3	1	1	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
MoeA_N	PF03453.17	gi|384432717|ref|YP_005642075.1|	-	4.5e-36	124.0	0.0	9.3e-36	123.0	0.0	1.5	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|384432717|ref|YP_005642075.1|	-	8e-25	87.2	0.0	1.2e-24	86.6	0.0	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|384432717|ref|YP_005642075.1|	-	4.5e-13	49.2	0.0	1.2e-12	47.8	0.0	1.8	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
7TMR-HDED	PF07697.11	gi|384432717|ref|YP_005642075.1|	-	0.17	12.0	0.0	0.32	11.1	0.0	1.4	1	0	0	1	1	1	0	7TM-HD	extracellular
GHMP_kinases_N	PF00288.26	gi|384432718|ref|YP_005642076.1|	-	3.5e-15	56.0	0.9	3.5e-15	56.0	0.9	1.7	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|384432718|ref|YP_005642076.1|	-	1.9e-07	31.3	0.0	5.2e-07	29.9	0.0	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Cys_Met_Meta_PP	PF01053.20	gi|384432719|ref|YP_005642077.1|	-	1.2e-125	419.1	0.0	1.4e-125	418.9	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|384432719|ref|YP_005642077.1|	-	1.3e-07	31.2	0.0	2.5e-07	30.2	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|384432719|ref|YP_005642077.1|	-	9.9e-06	24.7	0.0	1.9e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
GDC-P	PF02347.16	gi|384432719|ref|YP_005642077.1|	-	0.0011	17.9	0.0	0.0016	17.4	0.0	1.2	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Beta_elim_lyase	PF01212.21	gi|384432719|ref|YP_005642077.1|	-	0.0027	17.0	0.1	0.043	13.1	0.1	2.2	1	1	0	1	1	1	1	Beta-eliminating	lyase
Met_gamma_lyase	PF06838.11	gi|384432719|ref|YP_005642077.1|	-	0.0029	16.2	0.0	0.21	10.1	0.0	2.1	1	1	0	1	1	1	1	Methionine	gamma-lyase
zf-C2H2_4	PF13894.6	gi|384432720|ref|YP_005642078.1|	-	0.1	13.5	0.6	0.2	12.6	0.6	1.5	1	0	0	1	1	1	0	C2H2-type	zinc	finger
DUF4930	PF16284.5	gi|384432720|ref|YP_005642078.1|	-	0.12	12.4	0.1	0.14	12.1	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4930)
DUF1152	PF06626.12	gi|384432722|ref|YP_005642080.1|	-	2.5e-116	388.0	0.0	2.9e-116	387.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1152)
Glyco_transf_28	PF03033.20	gi|384432722|ref|YP_005642080.1|	-	0.038	14.0	0.0	0.72	9.9	0.0	2.8	3	0	0	3	3	3	0	Glycosyltransferase	family	28	N-terminal	domain
DUF3883	PF13020.6	gi|384432723|ref|YP_005642081.1|	-	0.0086	16.1	0.2	0.02	15.0	0.1	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3883)
UBA_2	PF08587.11	gi|384432723|ref|YP_005642081.1|	-	0.014	15.5	0.0	0.34	11.0	0.0	2.3	2	0	0	2	2	2	0	Ubiquitin	associated	domain	(UBA)
RE_EcoO109I	PF14511.6	gi|384432723|ref|YP_005642081.1|	-	0.04	13.5	0.1	0.18	11.3	0.0	1.8	2	0	0	2	2	2	0	Type	II	restriction	endonuclease	EcoO109I
HetR_C	PF18460.1	gi|384432723|ref|YP_005642081.1|	-	0.13	12.2	0.1	0.43	10.5	0.0	1.9	2	0	0	2	2	2	0	Heterocyst	differentiation	regulator	C-terminal	Hood	domain
KH_1	PF00013.29	gi|384432724|ref|YP_005642082.1|	-	0.00014	21.6	5.7	0.00027	20.7	2.6	2.7	2	2	1	3	3	3	1	KH	domain
5_3_exonuc	PF01367.20	gi|384432724|ref|YP_005642082.1|	-	0.0076	16.8	1.2	0.012	16.2	0.4	1.8	2	1	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
RIO1	PF01163.22	gi|384432725|ref|YP_005642083.1|	-	9e-65	217.8	0.1	1.3e-64	217.3	0.1	1.2	1	0	0	1	1	1	1	RIO1	family
Kdo	PF06293.14	gi|384432725|ref|YP_005642083.1|	-	3.4e-06	26.6	0.0	5.9e-05	22.5	0.0	2.1	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|384432725|ref|YP_005642083.1|	-	0.0013	18.7	0.0	0.0055	16.6	0.0	1.8	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
Pkinase_fungal	PF17667.1	gi|384432725|ref|YP_005642083.1|	-	0.0036	16.1	0.1	0.011	14.5	0.1	1.2	1	1	0	1	1	1	1	Fungal	protein	kinase
eIF-1a	PF01176.19	gi|384432726|ref|YP_005642084.1|	-	1.6e-23	82.2	0.2	2.1e-23	81.9	0.2	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Thiolase_N	PF00108.23	gi|384432727|ref|YP_005642085.1|	-	4.6e-84	281.8	0.6	5.6e-84	281.5	0.6	1.1	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384432727|ref|YP_005642085.1|	-	6.5e-35	119.5	0.0	1.5e-34	118.3	0.0	1.6	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|384432727|ref|YP_005642085.1|	-	2.9e-05	23.8	2.2	7.1e-05	22.5	1.3	1.9	1	1	1	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|384432727|ref|YP_005642085.1|	-	0.00026	20.8	1.6	0.014	15.3	0.5	2.4	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
SpoVAD	PF07451.11	gi|384432727|ref|YP_005642085.1|	-	0.02	13.6	0.1	0.04	12.6	0.1	1.4	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AD	(SpoVAD)
UPF0004	PF00919.20	gi|384432728|ref|YP_005642086.1|	-	3.4e-24	84.7	0.1	6.2e-24	83.9	0.1	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
Radical_SAM	PF04055.21	gi|384432728|ref|YP_005642086.1|	-	6.4e-24	85.2	0.0	1.4e-23	84.1	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
TRAM	PF01938.20	gi|384432728|ref|YP_005642086.1|	-	1.8e-10	40.6	0.0	4e-10	39.6	0.0	1.6	1	0	0	1	1	1	1	TRAM	domain
TRAM_2	PF18693.1	gi|384432728|ref|YP_005642086.1|	-	0.0051	16.9	0.1	0.02	15.1	0.1	2.0	1	1	0	1	1	1	1	TRAM	domain
Orbi_VP3	PF01700.16	gi|384432728|ref|YP_005642086.1|	-	0.016	13.2	0.1	0.022	12.7	0.1	1.1	1	0	0	1	1	1	0	Orbivirus	VP3	(T2)	protein
Amidase_3	PF01520.18	gi|384432728|ref|YP_005642086.1|	-	0.026	14.7	0.0	0.057	13.5	0.0	1.5	1	0	0	1	1	1	0	N-acetylmuramoyl-L-alanine	amidase
eIF-5_eIF-2B	PF01873.17	gi|384432729|ref|YP_005642087.1|	-	1.3e-31	108.9	0.8	1.5e-31	108.7	0.8	1.1	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
SUI1	PF01253.22	gi|384432729|ref|YP_005642087.1|	-	0.0089	16.5	0.0	0.014	15.9	0.0	1.4	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
BTB_3	PF16017.5	gi|384432729|ref|YP_005642087.1|	-	0.02	15.0	0.0	0.03	14.4	0.0	1.5	1	1	0	1	1	1	0	BTB/POZ	domain
Lar_restr_allev	PF14354.6	gi|384432729|ref|YP_005642087.1|	-	0.054	13.9	0.1	0.09	13.2	0.1	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF424	PF04242.13	gi|384432730|ref|YP_005642088.1|	-	1.7e-26	92.3	0.5	1.8e-26	92.2	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
NMD3	PF04981.13	gi|384432731|ref|YP_005642089.1|	-	1e-49	169.2	4.0	1.1e-49	169.1	4.0	1.0	1	0	0	1	1	1	1	NMD3	family
DZR	PF12773.7	gi|384432731|ref|YP_005642089.1|	-	0.061	13.4	2.2	9.1	6.4	0.5	2.9	3	0	0	3	3	3	0	Double	zinc	ribbon
Rpr2	PF04032.16	gi|384432731|ref|YP_005642089.1|	-	0.16	12.3	2.8	2.6	8.4	0.1	2.7	3	1	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-C2HCIx2C	PF10782.9	gi|384432731|ref|YP_005642089.1|	-	0.31	11.0	2.9	7.1	6.6	0.4	2.8	2	0	0	2	2	2	0	Zinc-finger
Nudix_N_2	PF14803.6	gi|384432731|ref|YP_005642089.1|	-	1.1	9.2	4.6	54	3.8	0.2	3.3	3	0	0	3	3	3	0	Nudix	N-terminal
RNase_HII	PF01351.18	gi|384432732|ref|YP_005642090.1|	-	6.9e-44	150.1	0.0	7.8e-44	149.9	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
TGS	PF02824.21	gi|384432733|ref|YP_005642091.1|	-	1.8e-20	72.7	0.0	4.6e-20	71.4	0.0	1.7	2	0	0	2	2	2	1	TGS	domain
MMR_HSR1_Xtn	PF16897.5	gi|384432733|ref|YP_005642091.1|	-	1.5e-06	28.2	0.2	3.4e-06	27.0	0.2	1.6	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
T2SSF	PF00482.23	gi|384432734|ref|YP_005642092.1|	-	2.7e-18	66.1	2.2	7.3e-10	38.9	0.3	4.4	6	0	0	6	6	6	2	Type	II	secretion	system	(T2SS),	protein	F
T2SSE	PF00437.20	gi|384432735|ref|YP_005642093.1|	-	5.6e-44	150.2	0.1	1.8e-43	148.6	0.0	1.8	1	1	1	2	2	2	1	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.27	gi|384432735|ref|YP_005642093.1|	-	0.018	15.6	0.0	0.041	14.4	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|384432735|ref|YP_005642093.1|	-	0.056	13.0	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
PCMT	PF01135.19	gi|384432735|ref|YP_005642093.1|	-	0.066	13.0	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MMR_HSR1	PF01926.23	gi|384432735|ref|YP_005642093.1|	-	0.11	12.6	0.0	0.24	11.5	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_29	PF13555.6	gi|384432735|ref|YP_005642093.1|	-	0.11	12.3	0.1	0.27	11.0	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.6	gi|384432735|ref|YP_005642093.1|	-	0.11	12.8	0.0	1.7	8.9	0.0	2.4	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|384432735|ref|YP_005642093.1|	-	0.14	11.7	0.0	0.27	10.8	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_30	PF13604.6	gi|384432735|ref|YP_005642093.1|	-	0.21	11.3	0.0	0.72	9.5	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
Glyco_trans_2_3	PF13632.6	gi|384432736|ref|YP_005642094.1|	-	3.5e-21	76.0	0.1	3.5e-21	76.0	0.1	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|384432736|ref|YP_005642094.1|	-	2.1e-19	70.3	0.0	2.9e-19	69.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|384432736|ref|YP_005642094.1|	-	2.7e-16	59.8	1.4	3.9e-16	59.3	1.4	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|384432736|ref|YP_005642094.1|	-	7.3e-12	45.1	0.1	3.9e-11	42.7	0.0	2.0	1	1	1	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|384432736|ref|YP_005642094.1|	-	2.3e-05	24.0	2.1	2.3e-05	24.0	2.1	1.9	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Osmo_MPGsynth	PF09488.10	gi|384432736|ref|YP_005642094.1|	-	0.093	11.4	0.1	0.2	10.3	0.1	1.5	1	0	0	1	1	1	0	Mannosyl-3-phosphoglycerate	synthase	(osmo_MPGsynth)
DUF3801	PF12687.7	gi|384432736|ref|YP_005642094.1|	-	0.12	12.4	0.3	0.17	12.0	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3801)
Pyrophosphatase	PF00719.19	gi|384432737|ref|YP_005642095.1|	-	2.4e-58	196.5	0.4	2.7e-58	196.3	0.4	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
HD_2	PF12917.7	gi|384432738|ref|YP_005642096.1|	-	1.3e-13	51.1	0.0	8.6e-13	48.4	0.0	1.9	1	1	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD_3	PF13023.6	gi|384432738|ref|YP_005642096.1|	-	2.2e-13	50.5	0.0	1.6e-12	47.6	0.0	2.0	1	1	0	1	1	1	1	HD	domain
HD	PF01966.22	gi|384432738|ref|YP_005642096.1|	-	3.9e-05	23.9	0.3	0.0004	20.6	0.3	2.2	1	1	0	1	1	1	1	HD	domain
HDOD	PF08668.12	gi|384432738|ref|YP_005642096.1|	-	0.017	14.6	0.0	0.026	14.0	0.0	1.3	1	0	0	1	1	1	0	HDOD	domain
THP2	PF09432.10	gi|384432738|ref|YP_005642096.1|	-	0.017	15.1	0.0	0.032	14.3	0.0	1.4	1	1	0	1	1	1	0	Tho	complex	subunit	THP2
Phos_pyr_kin	PF08543.12	gi|384432739|ref|YP_005642097.1|	-	8.1e-71	238.3	0.0	1.1e-70	237.8	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|384432739|ref|YP_005642097.1|	-	2.4e-49	167.1	0.0	3.7e-49	166.5	0.0	1.3	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|384432739|ref|YP_005642097.1|	-	3.5e-07	29.8	0.0	5.4e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
DUF3074	PF11274.8	gi|384432739|ref|YP_005642097.1|	-	0.11	12.5	0.1	0.34	10.9	0.1	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3074)
MoaE	PF02391.17	gi|384432740|ref|YP_005642098.1|	-	2e-18	66.7	0.0	3e-18	66.2	0.0	1.2	1	0	0	1	1	1	1	MoaE	protein
ThiS	PF02597.20	gi|384432740|ref|YP_005642098.1|	-	3e-12	47.0	0.0	6.7e-12	45.9	0.0	1.6	1	0	0	1	1	1	1	ThiS	family
Fer4_8	PF13183.6	gi|384432742|ref|YP_005642100.1|	-	4.1e-09	36.8	3.8	8e-09	35.8	3.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384432742|ref|YP_005642100.1|	-	6e-07	29.9	3.5	1.6e-06	28.6	3.5	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384432742|ref|YP_005642100.1|	-	1.2e-06	29.0	4.9	2.8e-06	27.8	4.9	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384432742|ref|YP_005642100.1|	-	1.6e-06	28.1	2.5	0.005	16.9	0.1	2.7	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384432742|ref|YP_005642100.1|	-	5.2e-06	26.5	3.9	1.2e-05	25.3	3.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384432742|ref|YP_005642100.1|	-	1.1e-05	25.5	4.0	4.1e-05	23.7	4.2	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
FAD_binding_4	PF01565.23	gi|384432742|ref|YP_005642100.1|	-	2e-05	24.3	0.0	3.6e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_16	PF13484.6	gi|384432742|ref|YP_005642100.1|	-	0.0006	20.7	3.3	0.14	13.1	0.2	2.8	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|384432742|ref|YP_005642100.1|	-	0.0022	18.2	2.3	1.5	9.1	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384432742|ref|YP_005642100.1|	-	0.0093	15.8	17.4	0.015	15.1	3.0	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|384432742|ref|YP_005642100.1|	-	0.019	14.7	6.9	0.3	10.9	0.3	2.8	3	0	0	3	3	3	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_22	PF17179.4	gi|384432742|ref|YP_005642100.1|	-	0.029	15.2	3.5	2.1	9.2	0.5	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384432742|ref|YP_005642100.1|	-	0.14	12.7	12.6	0.39	11.3	3.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384432742|ref|YP_005642100.1|	-	0.17	12.1	17.7	0.16	12.1	2.0	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|384432742|ref|YP_005642100.1|	-	1.9	9.6	19.5	0.95	10.6	5.1	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
GHMP_kinases_N	PF00288.26	gi|384432743|ref|YP_005642101.1|	-	8.2e-07	29.2	0.7	1.6e-06	28.3	0.7	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
PPS_PS	PF02006.16	gi|384432744|ref|YP_005642102.1|	-	1.4e-75	252.7	1.1	1.7e-75	252.4	1.1	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
Pantoate_transf	PF02548.15	gi|384432745|ref|YP_005642103.1|	-	9.7e-106	352.9	0.1	1.1e-105	352.7	0.1	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|384432745|ref|YP_005642103.1|	-	2.7e-05	23.8	0.6	0.0072	15.8	0.1	2.6	1	1	2	3	3	3	2	Phosphoenolpyruvate	phosphomutase
DUF5311	PF17238.2	gi|384432746|ref|YP_005642104.1|	-	0.087	12.7	0.2	0.14	12.0	0.2	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5311)
ABC_tran	PF00005.27	gi|384432747|ref|YP_005642105.1|	-	5.3e-24	85.3	0.0	7.6e-24	84.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384432747|ref|YP_005642105.1|	-	1.4e-10	41.5	1.2	1.9e-05	24.7	0.4	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|384432747|ref|YP_005642105.1|	-	0.00011	22.8	1.3	0.00025	21.6	1.2	1.6	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|384432747|ref|YP_005642105.1|	-	0.0016	17.9	0.9	1.3	8.4	0.0	2.5	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|384432747|ref|YP_005642105.1|	-	0.0049	16.6	0.0	0.0095	15.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|384432747|ref|YP_005642105.1|	-	0.0057	16.4	0.0	0.0083	15.9	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.22	gi|384432747|ref|YP_005642105.1|	-	0.014	15.0	0.1	0.03	13.9	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Rad17	PF03215.15	gi|384432747|ref|YP_005642105.1|	-	0.016	15.1	0.0	0.025	14.5	0.0	1.5	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|384432747|ref|YP_005642105.1|	-	0.063	13.0	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|384432747|ref|YP_005642105.1|	-	0.077	12.6	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|384432747|ref|YP_005642105.1|	-	0.1	13.1	0.0	0.4	11.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|384432747|ref|YP_005642105.1|	-	0.13	12.6	0.2	0.28	11.5	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|384432747|ref|YP_005642105.1|	-	0.18	12.1	0.2	0.67	10.2	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
ABC2_membrane_3	PF12698.7	gi|384432748|ref|YP_005642106.1|	-	3.1e-14	52.8	43.6	4.4e-14	52.4	43.6	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|384432748|ref|YP_005642106.1|	-	1e-11	44.7	22.2	1.4e-11	44.2	22.2	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|384432748|ref|YP_005642106.1|	-	4.6e-05	23.5	17.0	4.6e-05	23.5	17.0	3.4	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
AsnC_trans_reg	PF01037.21	gi|384432749|ref|YP_005642107.1|	-	1.2e-10	41.1	0.5	1.5e-10	40.9	0.5	1.1	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|384432749|ref|YP_005642107.1|	-	0.0019	18.2	0.3	0.81	9.8	0.1	2.1	1	1	1	2	2	2	2	NapD	protein
GYD	PF08734.11	gi|384432749|ref|YP_005642107.1|	-	0.021	14.8	0.0	0.025	14.5	0.0	1.3	1	1	0	1	1	1	0	GYD	domain
RHH_5	PF07878.11	gi|384432750|ref|YP_005642108.1|	-	0.00041	20.2	0.0	0.0011	18.8	0.0	1.7	2	0	0	2	2	2	1	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
CopG_antitoxin	PF12441.8	gi|384432750|ref|YP_005642108.1|	-	0.0017	18.9	2.6	0.0018	18.8	0.0	2.2	2	1	1	3	3	3	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
Scaffolding_pro	PF11418.8	gi|384432750|ref|YP_005642108.1|	-	0.099	13.2	0.8	0.099	13.2	0.8	1.8	1	1	1	2	2	2	0	Phi29	scaffolding	protein
RHH_1	PF01402.21	gi|384432751|ref|YP_005642109.1|	-	7.3e-09	35.2	0.2	1.2e-08	34.6	0.2	1.5	1	1	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|384432751|ref|YP_005642109.1|	-	0.00015	21.6	0.7	0.00027	20.8	0.3	1.6	1	1	1	2	2	2	1	Ribbon-helix-helix	domain
Lactamase_B_3	PF13483.6	gi|384432752|ref|YP_005642110.1|	-	4.4e-35	121.0	0.2	5.6e-35	120.6	0.2	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|384432752|ref|YP_005642110.1|	-	3.5e-16	59.3	0.2	4e-09	36.3	0.0	2.1	1	1	1	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384432752|ref|YP_005642110.1|	-	0.0043	17.1	4.6	0.015	15.3	3.5	2.1	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
HMGL-like	PF00682.19	gi|384432753|ref|YP_005642111.1|	-	1.1e-76	257.9	0.5	1.4e-76	257.5	0.5	1.1	1	0	0	1	1	1	1	HMGL-like
MAF_flag10	PF01973.18	gi|384432754|ref|YP_005642112.1|	-	2.6e-24	85.8	0.1	3.7e-24	85.3	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TPK_catalytic	PF04263.16	gi|384432754|ref|YP_005642112.1|	-	0.0026	17.8	0.0	0.0058	16.7	0.0	1.5	1	0	0	1	1	1	1	Thiamin	pyrophosphokinase,	catalytic	domain
DUF4121	PF13497.6	gi|384432755|ref|YP_005642113.1|	-	0.069	12.3	0.0	0.069	12.3	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4121)
HEPN	PF05168.14	gi|384432756|ref|YP_005642114.1|	-	0.00091	19.3	1.2	0.0072	16.4	1.3	2.0	1	1	0	1	1	1	1	HEPN	domain
Mad3_BUB1_I_2	PF17014.5	gi|384432757|ref|YP_005642115.1|	-	0.014	15.5	0.2	0.017	15.3	0.2	1.1	1	0	0	1	1	1	0	Putative	Mad3/BUB1	like	region	1	protein
NB-LRR	PF12061.8	gi|384432758|ref|YP_005642116.1|	-	0.019	14.3	0.6	0.031	13.6	0.6	1.3	1	0	0	1	1	1	0	Late	blight	resistance	protein	R1
Pneumo_M2	PF07380.11	gi|384432758|ref|YP_005642116.1|	-	0.067	13.5	1.0	0.13	12.5	1.0	1.5	1	0	0	1	1	1	0	Pneumovirus	M2	protein
PTPS	PF01242.19	gi|384432759|ref|YP_005642117.1|	-	1e-19	70.7	0.0	1.4e-19	70.3	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
DUF4974	PF16344.5	gi|384432760|ref|YP_005642118.1|	-	0.049	13.6	0.4	5	7.2	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4974)
DUF4346	PF14251.6	gi|384432761|ref|YP_005642119.1|	-	0.00017	21.6	0.0	0.0004	20.4	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4346)
Flavoprotein	PF02441.19	gi|384432761|ref|YP_005642119.1|	-	0.093	12.5	1.5	1.2	8.9	1.5	2.3	1	1	0	1	1	1	0	Flavoprotein
Radical_SAM	PF04055.21	gi|384432761|ref|YP_005642119.1|	-	0.19	12.1	0.5	0.71	10.2	0.5	2.0	1	1	0	1	1	1	0	Radical	SAM	superfamily
Pyr_redox_2	PF07992.14	gi|384432762|ref|YP_005642120.1|	-	3.2e-51	174.3	1.9	3.8e-51	174.1	1.9	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384432762|ref|YP_005642120.1|	-	2.1e-23	83.0	0.7	2.1e-23	83.0	0.7	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384432762|ref|YP_005642120.1|	-	3e-14	53.3	0.9	3e-14	53.3	0.9	2.6	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|384432762|ref|YP_005642120.1|	-	1.3e-05	24.5	0.1	0.12	11.5	0.0	3.2	2	1	1	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.14	gi|384432762|ref|YP_005642120.1|	-	7.4e-05	21.6	3.9	0.032	12.9	0.0	3.5	4	0	0	4	4	4	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384432762|ref|YP_005642120.1|	-	9.7e-05	21.9	0.2	0.0043	16.5	0.0	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|384432762|ref|YP_005642120.1|	-	0.00016	20.9	6.4	0.85	8.6	0.0	4.2	3	2	1	4	4	4	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|384432762|ref|YP_005642120.1|	-	0.0007	18.8	3.8	0.51	9.4	0.0	3.3	2	1	1	3	3	3	2	FAD	binding	domain
Thi4	PF01946.17	gi|384432762|ref|YP_005642120.1|	-	0.0085	15.4	4.7	0.26	10.5	0.1	3.2	3	0	0	3	3	3	1	Thi4	family
NAD_binding_7	PF13241.6	gi|384432762|ref|YP_005642120.1|	-	0.026	14.9	0.6	0.34	11.4	0.2	2.3	2	1	0	2	2	2	0	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|384432762|ref|YP_005642120.1|	-	0.11	12.5	0.4	0.8	9.7	0.0	2.4	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Inositol_P	PF00459.25	gi|384432763|ref|YP_005642121.1|	-	2.1e-19	70.1	0.0	2.6e-19	69.8	0.0	1.1	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|384432763|ref|YP_005642121.1|	-	0.00025	20.6	0.0	0.00039	19.9	0.0	1.3	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
AAA	PF00004.29	gi|384432764|ref|YP_005642122.1|	-	6.6e-84	279.0	0.0	6.8e-41	139.8	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|384432764|ref|YP_005642122.1|	-	1.4e-23	82.4	10.4	2.5e-13	49.6	1.6	3.2	3	0	0	3	3	3	2	AAA+	lid	domain
AAA_2	PF07724.14	gi|384432764|ref|YP_005642122.1|	-	2.2e-14	53.9	0.0	8.2e-07	29.3	0.0	3.2	3	0	0	3	3	2	2	AAA	domain	(Cdc48	subfamily)
AAA_14	PF13173.6	gi|384432764|ref|YP_005642122.1|	-	1.8e-13	50.6	0.1	1e-06	28.8	0.0	3.4	3	0	0	3	3	3	2	AAA	domain
AAA_5	PF07728.14	gi|384432764|ref|YP_005642122.1|	-	1e-12	48.2	0.6	0.0002	21.4	0.0	4.2	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|384432764|ref|YP_005642122.1|	-	2.3e-12	47.4	2.4	0.0047	17.2	0.0	5.2	3	2	2	5	5	5	2	AAA	domain
RuvB_N	PF05496.12	gi|384432764|ref|YP_005642122.1|	-	3e-12	46.6	0.0	3.4e-06	26.9	0.0	2.8	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|384432764|ref|YP_005642122.1|	-	1.4e-11	45.0	0.0	0.0049	17.3	0.0	4.6	2	2	2	4	4	4	2	AAA	ATPase	domain
AAA_18	PF13238.6	gi|384432764|ref|YP_005642122.1|	-	6.6e-10	39.6	0.0	0.00031	21.3	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|384432764|ref|YP_005642122.1|	-	9.1e-09	35.7	0.1	0.0023	18.3	0.0	3.3	3	0	0	3	3	2	2	RNA	helicase
AAA_17	PF13207.6	gi|384432764|ref|YP_005642122.1|	-	1.1e-08	35.6	0.1	0.0081	16.6	0.0	3.9	4	1	0	4	4	2	2	AAA	domain
Vps4_C	PF09336.10	gi|384432764|ref|YP_005642122.1|	-	1.2e-07	31.6	0.3	0.00049	20.0	0.0	3.1	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
IstB_IS21	PF01695.17	gi|384432764|ref|YP_005642122.1|	-	2.1e-07	30.9	0.0	0.014	15.1	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Rad17	PF03215.15	gi|384432764|ref|YP_005642122.1|	-	2.6e-07	30.8	0.1	0.028	14.3	0.0	3.1	2	1	1	3	3	3	2	Rad17	P-loop	domain
Mg_chelatase	PF01078.21	gi|384432764|ref|YP_005642122.1|	-	2.9e-07	30.1	3.1	0.0037	16.7	0.2	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.6	gi|384432764|ref|YP_005642122.1|	-	3e-07	30.8	0.0	0.016	15.5	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
NACHT	PF05729.12	gi|384432764|ref|YP_005642122.1|	-	1.1e-06	28.6	0.1	0.12	12.3	0.1	3.5	2	2	2	4	4	3	2	NACHT	domain
AAA_33	PF13671.6	gi|384432764|ref|YP_005642122.1|	-	1.5e-06	28.4	0.0	0.09	12.9	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|384432764|ref|YP_005642122.1|	-	1.6e-06	28.0	3.0	0.007	16.1	0.1	3.7	4	1	0	4	4	3	2	AAA	domain
TIP49	PF06068.13	gi|384432764|ref|YP_005642122.1|	-	2.2e-06	27.2	0.0	0.0072	15.6	0.0	2.5	2	1	0	2	2	2	2	TIP49	P-loop	domain
AAA_7	PF12775.7	gi|384432764|ref|YP_005642122.1|	-	2.4e-06	27.2	0.0	0.074	12.6	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
DUF815	PF05673.13	gi|384432764|ref|YP_005642122.1|	-	3.1e-06	26.5	0.1	0.14	11.3	0.1	3.1	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF815)
AAA_3	PF07726.11	gi|384432764|ref|YP_005642122.1|	-	4.3e-06	26.6	0.0	0.04	13.8	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|384432764|ref|YP_005642122.1|	-	6e-06	26.3	3.3	0.086	12.7	0.0	4.4	3	2	1	4	4	3	2	ATPase	domain	predominantly	from	Archaea
TsaE	PF02367.17	gi|384432764|ref|YP_005642122.1|	-	7e-06	26.1	0.0	0.026	14.5	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_25	PF13481.6	gi|384432764|ref|YP_005642122.1|	-	2e-05	24.2	0.5	0.38	10.3	0.1	3.4	2	1	1	3	3	3	1	AAA	domain
ABC_tran	PF00005.27	gi|384432764|ref|YP_005642122.1|	-	8.8e-05	23.0	0.1	0.3	11.6	0.0	3.0	2	1	0	2	2	2	1	ABC	transporter
AAA_30	PF13604.6	gi|384432764|ref|YP_005642122.1|	-	0.00021	21.1	0.2	0.97	9.1	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Bac_DnaA	PF00308.18	gi|384432764|ref|YP_005642122.1|	-	0.00024	21.0	0.0	0.6	9.9	0.0	3.2	2	2	0	2	2	2	1	Bacterial	dnaA	protein
AFG1_ATPase	PF03969.16	gi|384432764|ref|YP_005642122.1|	-	0.00026	20.0	0.2	0.33	9.8	0.1	2.6	2	1	0	2	2	2	2	AFG1-like	ATPase
TniB	PF05621.11	gi|384432764|ref|YP_005642122.1|	-	0.00069	19.1	0.2	1.3	8.4	0.0	3.2	2	1	0	3	3	3	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|384432764|ref|YP_005642122.1|	-	0.00079	19.2	0.0	2.1	8.0	0.0	3.0	2	1	0	2	2	2	1	Sigma-54	interaction	domain
Parvo_NS1	PF01057.17	gi|384432764|ref|YP_005642122.1|	-	0.0008	18.6	0.0	0.21	10.6	0.0	2.3	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
Guanylate_kin	PF00625.21	gi|384432764|ref|YP_005642122.1|	-	0.0011	18.6	0.0	5	6.8	0.0	3.6	3	1	1	4	4	3	0	Guanylate	kinase
MMR_HSR1	PF01926.23	gi|384432764|ref|YP_005642122.1|	-	0.0014	18.7	0.4	5.3	7.2	0.0	4.1	4	0	0	4	4	3	0	50S	ribosome-binding	GTPase
Sigma54_activ_2	PF14532.6	gi|384432764|ref|YP_005642122.1|	-	0.0015	18.7	0.0	1.1	9.4	0.0	2.7	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_11	PF13086.6	gi|384432764|ref|YP_005642122.1|	-	0.0018	18.1	0.0	1.4	8.6	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|384432764|ref|YP_005642122.1|	-	0.0022	17.8	0.0	0.099	12.4	0.0	2.5	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
Zeta_toxin	PF06414.12	gi|384432764|ref|YP_005642122.1|	-	0.0026	17.1	0.4	0.29	10.4	0.0	2.8	3	0	0	3	3	2	1	Zeta	toxin
ATPase	PF06745.13	gi|384432764|ref|YP_005642122.1|	-	0.003	16.9	0.6	3.8	6.8	0.0	3.1	2	2	1	3	3	3	0	KaiC
AAA_19	PF13245.6	gi|384432764|ref|YP_005642122.1|	-	0.0033	17.8	0.0	3	8.2	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
KTI12	PF08433.10	gi|384432764|ref|YP_005642122.1|	-	0.0034	16.9	0.0	0.19	11.1	0.0	3.1	3	0	0	3	3	3	1	Chromatin	associated	protein	KTI12
AAA_29	PF13555.6	gi|384432764|ref|YP_005642122.1|	-	0.0044	16.7	0.0	2.2	8.1	0.0	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|384432764|ref|YP_005642122.1|	-	0.0053	16.0	0.0	3.9	6.6	0.0	2.7	2	0	0	2	2	2	0	NB-ARC	domain
ATP-synt_ab	PF00006.25	gi|384432764|ref|YP_005642122.1|	-	0.0061	16.2	0.0	1.4	8.6	0.0	2.3	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Cytidylate_kin	PF02224.18	gi|384432764|ref|YP_005642122.1|	-	0.0064	16.2	0.0	0.43	10.3	0.0	2.4	2	0	0	2	2	2	1	Cytidylate	kinase
ResIII	PF04851.15	gi|384432764|ref|YP_005642122.1|	-	0.0072	16.3	0.1	2.6	8.0	0.0	2.9	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
dNK	PF01712.19	gi|384432764|ref|YP_005642122.1|	-	0.0072	16.2	0.0	14	5.5	0.0	3.4	3	1	0	3	3	3	0	Deoxynucleoside	kinase
SKI	PF01202.22	gi|384432764|ref|YP_005642122.1|	-	0.019	15.1	0.0	3	8.0	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
NTPase_1	PF03266.15	gi|384432764|ref|YP_005642122.1|	-	0.019	14.9	0.2	1.3	8.9	0.0	2.9	3	0	0	3	3	2	0	NTPase
Adeno_IVa2	PF02456.15	gi|384432764|ref|YP_005642122.1|	-	0.024	13.4	0.0	1.6	7.4	0.0	2.8	3	0	0	3	3	3	0	Adenovirus	IVa2	protein
Glutaredoxin	PF00462.24	gi|384432764|ref|YP_005642122.1|	-	0.039	14.2	0.0	0.51	10.6	0.0	2.8	3	0	0	3	3	1	0	Glutaredoxin
PduV-EutP	PF10662.9	gi|384432764|ref|YP_005642122.1|	-	0.045	13.5	0.1	3.1	7.5	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_6	PF12774.7	gi|384432764|ref|YP_005642122.1|	-	0.05	12.6	0.0	7	5.5	0.0	2.4	2	0	0	2	2	2	0	Hydrolytic	ATP	binding	site	of	dynein	motor	region
Cytidylate_kin2	PF13189.6	gi|384432764|ref|YP_005642122.1|	-	0.057	13.5	0.0	13	5.9	0.0	3.2	3	0	0	3	3	3	0	Cytidylate	kinase-like	family
RsgA_GTPase	PF03193.16	gi|384432764|ref|YP_005642122.1|	-	0.06	13.3	0.0	12	5.8	0.0	2.7	2	0	0	2	2	2	0	RsgA	GTPase
Roc	PF08477.13	gi|384432764|ref|YP_005642122.1|	-	0.062	13.5	0.3	10	6.4	0.0	3.2	3	0	0	3	3	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
PPV_E1_C	PF00519.17	gi|384432764|ref|YP_005642122.1|	-	0.071	11.9	0.0	0.53	9.1	0.0	2.0	2	0	0	2	2	2	0	Papillomavirus	helicase
IPT	PF01745.16	gi|384432764|ref|YP_005642122.1|	-	0.078	12.4	0.0	2.1	7.7	0.0	2.5	2	0	0	2	2	2	0	Isopentenyl	transferase
KAP_NTPase	PF07693.14	gi|384432764|ref|YP_005642122.1|	-	0.092	12.0	0.1	5.2	6.2	0.0	3.1	2	1	1	3	3	3	0	KAP	family	P-loop	domain
DAP3	PF10236.9	gi|384432764|ref|YP_005642122.1|	-	0.093	11.9	0.1	20	4.2	0.0	2.8	2	1	1	3	3	3	0	Mitochondrial	ribosomal	death-associated	protein	3
Hydin_ADK	PF17213.3	gi|384432764|ref|YP_005642122.1|	-	0.095	13.0	0.2	9.6	6.4	0.2	3.1	3	0	0	3	3	3	0	Hydin	Adenylate	kinase-like	domain
PhoH	PF02562.16	gi|384432764|ref|YP_005642122.1|	-	0.1	12.0	0.4	15	4.9	0.3	2.9	2	1	0	2	2	2	0	PhoH-like	protein
ATP_bind_1	PF03029.17	gi|384432764|ref|YP_005642122.1|	-	0.11	12.3	0.0	20	4.9	0.0	2.7	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
DUF1677	PF07911.13	gi|384432764|ref|YP_005642122.1|	-	0.12	12.8	0.0	0.42	11.0	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1677)
SRP54	PF00448.22	gi|384432764|ref|YP_005642122.1|	-	0.17	11.5	1.3	18	4.9	0.2	2.9	3	0	0	3	3	2	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.19	gi|384432764|ref|YP_005642122.1|	-	0.21	11.2	0.9	8.8	5.9	0.0	2.7	3	0	0	3	3	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DAO	PF01266.24	gi|384432765|ref|YP_005642123.1|	-	5.4e-17	62.4	0.2	1.6e-08	34.5	0.0	2.8	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|384432765|ref|YP_005642123.1|	-	6.7e-14	52.0	0.1	7.3e-13	48.6	0.0	2.0	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|384432765|ref|YP_005642123.1|	-	2.4e-11	43.7	0.1	6.3e-11	42.3	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|384432765|ref|YP_005642123.1|	-	1.8e-10	40.5	0.3	9.3e-06	25.1	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|384432765|ref|YP_005642123.1|	-	7.9e-09	35.1	4.0	0.00019	20.7	2.3	2.7	3	0	0	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|384432765|ref|YP_005642123.1|	-	1.9e-08	34.1	0.6	4e-05	23.1	0.1	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|384432765|ref|YP_005642123.1|	-	2.9e-08	34.2	5.4	0.0019	18.7	0.3	2.9	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|384432765|ref|YP_005642123.1|	-	6.6e-07	28.8	1.3	5.1e-06	25.9	0.6	2.2	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.14	gi|384432765|ref|YP_005642123.1|	-	7.5e-07	28.2	2.6	0.0022	16.8	1.2	2.5	2	0	0	2	2	2	2	HI0933-like	protein
GIDA	PF01134.22	gi|384432765|ref|YP_005642123.1|	-	1.2e-06	27.9	2.3	0.002	17.3	0.5	2.5	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.14	gi|384432765|ref|YP_005642123.1|	-	7.9e-06	25.0	3.0	0.016	14.1	0.8	2.3	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_binding_3	PF01494.19	gi|384432765|ref|YP_005642123.1|	-	7.5e-05	22.1	0.9	0.00038	19.8	0.4	2.0	2	0	0	2	2	2	1	FAD	binding	domain
GDI	PF00996.18	gi|384432765|ref|YP_005642123.1|	-	0.01	14.4	0.1	0.18	10.2	0.0	2.1	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
Lycopene_cycl	PF05834.12	gi|384432765|ref|YP_005642123.1|	-	0.034	13.2	1.3	0.18	10.8	0.3	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
XdhC_C	PF13478.6	gi|384432765|ref|YP_005642123.1|	-	0.071	13.6	0.0	2.4	8.7	0.0	2.4	2	0	0	2	2	2	0	XdhC	Rossmann	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384432765|ref|YP_005642123.1|	-	0.074	12.6	0.1	0.15	11.6	0.1	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_9	PF13454.6	gi|384432765|ref|YP_005642123.1|	-	0.089	12.8	1.3	0.2	11.7	0.1	2.0	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|384432765|ref|YP_005642123.1|	-	0.13	11.5	4.1	0.34	10.1	1.0	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|384432765|ref|YP_005642123.1|	-	0.23	11.3	0.8	0.55	10.1	0.8	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384432765|ref|YP_005642123.1|	-	0.55	9.6	2.0	6.7	6.0	0.1	3.1	4	0	0	4	4	4	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Phosphodiest	PF01663.22	gi|384432766|ref|YP_005642124.1|	-	7.3e-14	52.1	2.8	8.1e-13	48.7	2.9	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|384432766|ref|YP_005642124.1|	-	0.00013	21.4	0.0	0.00022	20.7	0.0	1.3	1	0	0	1	1	1	1	Metalloenzyme	superfamily
PglZ	PF08665.12	gi|384432766|ref|YP_005642124.1|	-	0.15	12.1	0.1	0.57	10.2	0.0	1.9	2	0	0	2	2	2	0	PglZ	domain
Pribosyltran	PF00156.27	gi|384432767|ref|YP_005642125.1|	-	1.9e-23	82.7	0.1	2.6e-23	82.3	0.1	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
MM_CoA_mutase	PF01642.22	gi|384432768|ref|YP_005642126.1|	-	3.3e-219	728.7	0.0	3.8e-219	728.5	0.0	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Glyoxalase_4	PF13669.6	gi|384432769|ref|YP_005642127.1|	-	2.4e-23	82.5	0.0	2.9e-23	82.2	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.25	gi|384432769|ref|YP_005642127.1|	-	4e-13	49.7	0.0	4.6e-13	49.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|384432769|ref|YP_005642127.1|	-	8e-11	42.4	0.0	9.9e-11	42.1	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
CppA_N	PF14506.6	gi|384432769|ref|YP_005642127.1|	-	0.015	15.4	0.1	0.026	14.6	0.1	1.7	1	1	0	1	1	1	0	CppA	N-terminal
Glyoxalase_6	PF18029.1	gi|384432769|ref|YP_005642127.1|	-	0.041	14.7	0.0	0.056	14.2	0.0	1.2	1	0	0	1	1	1	0	Glyoxalase-like	domain
DUF1338	PF07063.13	gi|384432769|ref|YP_005642127.1|	-	0.15	11.3	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1338)
ArsA_HSP20	PF17886.1	gi|384432770|ref|YP_005642128.1|	-	1.5e-13	50.1	0.1	2.1e-13	49.6	0.1	1.2	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|384432770|ref|YP_005642128.1|	-	2e-12	47.1	3.0	4.3e-11	42.8	3.0	2.3	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.16	gi|384432770|ref|YP_005642128.1|	-	3.6e-05	24.7	1.5	5.3e-05	24.1	1.5	1.2	1	0	0	1	1	1	1	CS	domain
PIH1_CS	PF18201.1	gi|384432770|ref|YP_005642128.1|	-	0.0015	18.9	0.1	0.0021	18.4	0.1	1.2	1	0	0	1	1	1	1	PIH1	CS-like	domain
GvpH	PF05455.11	gi|384432770|ref|YP_005642128.1|	-	0.0045	17.1	0.1	0.0064	16.6	0.1	1.2	1	0	0	1	1	1	1	GvpH
zf-ZPR1	PF03367.13	gi|384432771|ref|YP_005642129.1|	-	3.4e-30	105.0	0.0	7.9e-30	103.8	0.0	1.5	1	1	0	1	1	1	1	ZPR1	zinc-finger	domain
Lar_restr_allev	PF14354.6	gi|384432771|ref|YP_005642129.1|	-	0.016	15.6	0.1	0.031	14.6	0.1	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
TackOD1	PF18551.1	gi|384432771|ref|YP_005642129.1|	-	0.022	14.4	0.2	0.038	13.7	0.2	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-FCS	PF06467.14	gi|384432771|ref|YP_005642129.1|	-	0.032	14.2	0.6	1.5	8.8	0.0	2.5	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
TF_Zn_Ribbon	PF08271.12	gi|384432771|ref|YP_005642129.1|	-	0.042	13.4	2.7	0.57	9.7	2.5	2.5	1	1	1	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|384432771|ref|YP_005642129.1|	-	0.072	13.2	2.9	6.1	7.0	0.1	2.7	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-DBF	PF07535.12	gi|384432771|ref|YP_005642129.1|	-	0.082	13.0	1.1	0.18	12.0	1.1	1.5	1	0	0	1	1	1	0	DBF	zinc	finger
GTP_EFTU	PF00009.27	gi|384432772|ref|YP_005642130.1|	-	9.6e-21	74.2	0.0	1.7e-20	73.4	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|384432772|ref|YP_005642130.1|	-	6.2e-08	32.9	2.5	1.3e-07	31.9	1.0	2.4	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|384432772|ref|YP_005642130.1|	-	1.3e-05	25.4	0.6	4.3e-05	23.8	0.6	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
MMR_HSR1	PF01926.23	gi|384432772|ref|YP_005642130.1|	-	0.0004	20.5	0.1	0.001	19.2	0.1	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.9	gi|384432772|ref|YP_005642130.1|	-	0.0074	16.0	0.2	10	5.9	0.0	3.4	2	1	1	3	3	3	1	Ethanolamine	utilisation	-	propanediol	utilisation
AlbA_2	PF04326.14	gi|384432772|ref|YP_005642130.1|	-	0.0096	16.2	2.0	0.25	11.7	0.1	3.2	3	1	0	3	3	3	1	Putative	DNA-binding	domain
COXG	PF06240.13	gi|384432773|ref|YP_005642131.1|	-	6.5e-17	61.6	0.3	7.6e-17	61.4	0.3	1.1	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DUF3211	PF11485.8	gi|384432773|ref|YP_005642131.1|	-	0.023	14.9	0.6	0.033	14.4	0.6	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3211)
DUF3750	PF12570.8	gi|384432773|ref|YP_005642131.1|	-	0.026	15.2	0.0	0.037	14.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3750)
COXG	PF06240.13	gi|384432774|ref|YP_005642132.1|	-	3.8e-46	156.3	0.8	4.2e-46	156.2	0.8	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc2	PF10604.9	gi|384432774|ref|YP_005642132.1|	-	0.0041	17.4	0.0	0.0048	17.2	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF3211	PF11485.8	gi|384432774|ref|YP_005642132.1|	-	0.012	15.8	0.4	0.017	15.3	0.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3211)
NTP_transf_3	PF12804.7	gi|384432775|ref|YP_005642133.1|	-	6e-35	121.0	0.0	7e-35	120.8	0.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|384432775|ref|YP_005642133.1|	-	9e-08	32.1	0.0	1.5e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CofC	PF01983.16	gi|384432775|ref|YP_005642133.1|	-	0.0085	15.3	0.1	0.013	14.6	0.1	1.5	1	1	0	1	1	1	1	Guanylyl	transferase	CofC	like
CDC13_N	PF16853.5	gi|384432775|ref|YP_005642133.1|	-	0.038	13.5	0.1	0.057	12.9	0.1	1.2	1	0	0	1	1	1	0	Cell	division	control	protein	13	N-terminus
Fer2_2	PF01799.20	gi|384432776|ref|YP_005642134.1|	-	2.1e-35	120.5	1.5	5.9e-35	119.1	0.0	2.0	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|384432776|ref|YP_005642134.1|	-	8.7e-07	28.8	0.7	8.7e-07	28.8	0.7	2.1	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|384432776|ref|YP_005642134.1|	-	0.0002	21.3	0.8	0.00052	20.0	0.8	1.7	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|384432776|ref|YP_005642134.1|	-	0.019	15.0	0.8	0.7	10.0	0.4	2.3	2	0	0	2	2	2	0	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF5634_N	PF18672.1	gi|384432776|ref|YP_005642134.1|	-	0.11	12.3	0.1	3.9	7.3	0.0	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5634)
FAD_binding_5	PF00941.21	gi|384432777|ref|YP_005642135.1|	-	1.4e-50	171.4	0.0	1.9e-50	170.9	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|384432777|ref|YP_005642135.1|	-	9.8e-27	93.1	1.0	1.9e-26	92.2	1.0	1.5	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
T3SchapCesA	PF11439.8	gi|384432777|ref|YP_005642135.1|	-	0.08	13.1	0.3	0.29	11.3	0.0	2.0	2	0	0	2	2	2	0	Type	III	secretion	system	filament	chaperone	CesA
YHS	PF04945.13	gi|384432778|ref|YP_005642136.1|	-	5.9e-12	45.5	4.4	6.7e-12	45.3	4.4	1.0	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|384432778|ref|YP_005642136.1|	-	4.3e-08	33.3	3.4	5e-08	33.1	3.4	1.1	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.14	gi|384432778|ref|YP_005642136.1|	-	6.4e-08	32.4	1.9	8e-08	32.1	1.9	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
FAP206	PF12018.8	gi|384432778|ref|YP_005642136.1|	-	0.0052	16.3	0.3	0.0057	16.2	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
DUF2116	PF09889.9	gi|384432778|ref|YP_005642136.1|	-	0.009	16.0	0.5	0.4	10.7	0.1	2.0	2	0	0	2	2	2	1	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
VATC	PF18716.1	gi|384432778|ref|YP_005642136.1|	-	0.032	14.1	4.1	0.068	13.0	4.1	1.6	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
zf-FLZ	PF04570.14	gi|384432778|ref|YP_005642136.1|	-	0.067	12.7	2.6	0.075	12.5	2.6	1.1	1	0	0	1	1	1	0	zinc-finger	of	the	FCS-type,	C2-C2
DUF2175	PF09943.9	gi|384432778|ref|YP_005642136.1|	-	0.09	13.1	0.4	0.092	13.0	0.4	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
TP_methylase	PF00590.20	gi|384432779|ref|YP_005642137.1|	-	5.5e-48	163.7	0.1	6.4e-48	163.5	0.1	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Fructosamin_kin	PF03881.14	gi|384432779|ref|YP_005642137.1|	-	0.1	11.8	0.1	0.23	10.6	0.0	1.5	2	0	0	2	2	2	0	Fructosamine	kinase
DUF1404	PF07185.11	gi|384432780|ref|YP_005642138.1|	-	3.9e-07	29.9	11.3	3.9e-07	29.9	11.3	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1404)
SIS	PF01380.22	gi|384432782|ref|YP_005642140.1|	-	7e-14	51.8	0.1	3.7e-07	30.1	0.1	2.8	2	1	0	2	2	2	2	SIS	domain
Amidohydro_1	PF01979.20	gi|384432783|ref|YP_005642141.1|	-	2.8e-09	36.8	0.0	0.00021	20.7	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|384432783|ref|YP_005642141.1|	-	1.6e-05	24.6	0.0	0.00034	20.2	0.0	2.1	2	0	0	2	2	2	1	Amidohydrolase	family
Met_10	PF02475.16	gi|384432784|ref|YP_005642142.1|	-	3.1e-45	154.4	0.1	4.4e-45	153.9	0.1	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
PrmA	PF06325.13	gi|384432784|ref|YP_005642142.1|	-	0.0093	15.4	0.0	0.013	14.9	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Gln-synt_C	PF00120.24	gi|384432785|ref|YP_005642143.1|	-	4.4e-76	256.1	0.0	1.5e-75	254.4	0.0	1.8	1	1	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N_2	PF16952.5	gi|384432785|ref|YP_005642143.1|	-	0.00025	20.8	0.0	0.00063	19.5	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
Gln-synt_N	PF03951.19	gi|384432785|ref|YP_005642143.1|	-	0.00069	19.3	0.0	1	9.2	0.0	2.5	2	0	0	2	2	2	2	Glutamine	synthetase,	beta-Grasp	domain
ADH_N	PF08240.12	gi|384432786|ref|YP_005642144.1|	-	2.4e-29	101.4	1.1	4.4e-29	100.6	1.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384432786|ref|YP_005642144.1|	-	3.8e-22	78.7	0.0	1e-21	77.3	0.0	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384432786|ref|YP_005642144.1|	-	2.9e-16	60.7	0.0	5.2e-16	59.9	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|384432786|ref|YP_005642144.1|	-	1.3e-05	24.6	0.2	1.9e-05	24.1	0.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Glu_dehyd_C	PF16912.5	gi|384432786|ref|YP_005642144.1|	-	0.00033	20.2	0.1	0.00047	19.7	0.1	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
NAD_binding_7	PF13241.6	gi|384432786|ref|YP_005642144.1|	-	0.0011	19.4	0.0	0.0019	18.6	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|384432786|ref|YP_005642144.1|	-	0.0014	18.3	0.1	0.0026	17.4	0.1	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Shikimate_DH	PF01488.20	gi|384432786|ref|YP_005642144.1|	-	0.0036	17.4	0.1	0.0069	16.4	0.1	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.18	gi|384432786|ref|YP_005642144.1|	-	0.0099	16.1	0.1	0.02	15.1	0.1	1.5	1	0	0	1	1	1	1	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|384432786|ref|YP_005642144.1|	-	0.016	15.4	0.1	0.028	14.7	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384432786|ref|YP_005642144.1|	-	0.074	12.4	0.1	0.13	11.6	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|384432786|ref|YP_005642144.1|	-	0.079	13.5	0.1	0.17	12.4	0.1	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
PUA	PF01472.20	gi|384432786|ref|YP_005642144.1|	-	0.079	12.9	0.5	0.29	11.1	0.1	2.1	2	0	0	2	2	2	0	PUA	domain
YbjQ_1	PF01906.17	gi|384432786|ref|YP_005642144.1|	-	0.11	13.2	0.1	0.37	11.4	0.0	2.0	2	0	0	2	2	1	0	Putative	heavy-metal-binding
FAD_binding_3	PF01494.19	gi|384432786|ref|YP_005642144.1|	-	0.13	11.5	0.1	0.17	11.1	0.1	1.1	1	0	0	1	1	1	0	FAD	binding	domain
Ribosomal_L13e	PF01294.18	gi|384432787|ref|YP_005642145.1|	-	6.3e-12	45.7	0.1	7.6e-12	45.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13e
RTC	PF01137.21	gi|384432788|ref|YP_005642146.1|	-	3.8e-74	248.6	0.1	2.9e-73	245.8	0.1	1.9	1	1	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.13	gi|384432788|ref|YP_005642146.1|	-	2.3e-21	76.2	0.5	3.7e-21	75.6	0.5	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
IMS	PF00817.20	gi|384432790|ref|YP_005642148.1|	-	2.6e-45	154.1	0.2	5.3e-45	153.1	0.2	1.5	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_HHH	PF11798.8	gi|384432790|ref|YP_005642148.1|	-	1e-07	31.8	0.1	3.4e-07	30.2	0.1	2.0	1	0	0	1	1	1	1	IMS	family	HHH	motif
IMS_C	PF11799.8	gi|384432790|ref|YP_005642148.1|	-	0.00014	22.5	0.2	0.00046	20.9	0.2	1.8	2	0	0	2	2	2	1	impB/mucB/samB	family	C-terminal	domain
Cdd1	PF11731.8	gi|384432790|ref|YP_005642148.1|	-	0.028	14.7	0.0	0.08	13.2	0.0	1.8	1	1	0	1	1	1	0	Pathogenicity	locus
HhH-GPD	PF00730.25	gi|384432790|ref|YP_005642148.1|	-	0.038	14.4	0.2	0.77	10.2	0.2	2.6	1	1	0	1	1	1	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
Mt_ATP-synt_D	PF05873.12	gi|384432790|ref|YP_005642148.1|	-	0.062	13.2	0.0	0.15	11.9	0.0	1.6	1	0	0	1	1	1	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
BAF	PF02961.14	gi|384432790|ref|YP_005642148.1|	-	0.12	12.9	0.0	0.29	11.6	0.0	1.6	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
HHH_5	PF14520.6	gi|384432790|ref|YP_005642148.1|	-	0.45	11.2	5.3	0.18	12.5	0.6	2.7	2	2	1	3	3	3	0	Helix-hairpin-helix	domain
PfkB	PF00294.24	gi|384432791|ref|YP_005642149.1|	-	5.2e-31	108.1	0.1	1.3e-28	100.2	0.1	2.2	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
TIP49	PF06068.13	gi|384432792|ref|YP_005642150.1|	-	7.4e-136	453.0	1.5	1.1e-135	452.5	1.5	1.2	1	0	0	1	1	1	1	TIP49	P-loop	domain
TIP49_C	PF17856.1	gi|384432792|ref|YP_005642150.1|	-	4.1e-22	78.1	1.7	3.2e-21	75.2	0.5	2.8	3	0	0	3	3	3	1	TIP49	AAA-lid	domain
AAA	PF00004.29	gi|384432792|ref|YP_005642150.1|	-	3.4e-11	43.7	0.6	3.1e-08	34.1	0.0	2.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|384432792|ref|YP_005642150.1|	-	3.6e-09	36.6	0.4	2.3e-07	30.7	0.1	2.5	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|384432792|ref|YP_005642150.1|	-	1.7e-07	31.6	0.6	0.025	14.9	0.1	2.6	2	1	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|384432792|ref|YP_005642150.1|	-	5.6e-05	22.6	0.5	0.00047	19.6	0.1	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|384432792|ref|YP_005642150.1|	-	5.7e-05	23.6	5.1	0.00016	22.1	2.5	2.5	2	1	0	2	2	1	1	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|384432792|ref|YP_005642150.1|	-	0.00011	22.0	0.2	0.0056	16.4	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|384432792|ref|YP_005642150.1|	-	0.00044	20.8	0.2	0.001	19.6	0.2	1.6	1	0	0	1	1	1	1	ABC	transporter
DnaB_C	PF03796.15	gi|384432792|ref|YP_005642150.1|	-	0.00045	19.6	0.2	0.0012	18.3	0.1	1.7	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_7	PF12775.7	gi|384432792|ref|YP_005642150.1|	-	0.00054	19.5	0.1	0.0015	18.1	0.0	1.6	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|384432792|ref|YP_005642150.1|	-	0.00079	20.0	0.1	0.012	16.1	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|384432792|ref|YP_005642150.1|	-	0.00097	19.2	0.1	0.0049	16.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.17	gi|384432792|ref|YP_005642150.1|	-	0.00097	18.9	0.1	0.0023	17.7	0.1	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_2	PF07724.14	gi|384432792|ref|YP_005642150.1|	-	0.0013	18.9	0.0	0.0057	16.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.6	gi|384432792|ref|YP_005642150.1|	-	0.0017	17.9	0.3	0.0054	16.3	0.1	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|384432792|ref|YP_005642150.1|	-	0.0019	18.3	0.0	0.0046	17.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|384432792|ref|YP_005642150.1|	-	0.011	16.1	0.9	0.054	13.9	0.0	2.5	3	1	0	3	3	3	0	AAA	domain
PhoH	PF02562.16	gi|384432792|ref|YP_005642150.1|	-	0.014	14.9	0.2	0.03	13.8	0.2	1.5	1	0	0	1	1	1	0	PhoH-like	protein
RNA_helicase	PF00910.22	gi|384432792|ref|YP_005642150.1|	-	0.014	15.8	0.0	0.026	14.9	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
ResIII	PF04851.15	gi|384432792|ref|YP_005642150.1|	-	0.02	14.9	0.1	0.47	10.5	0.0	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_28	PF13521.6	gi|384432792|ref|YP_005642150.1|	-	0.023	15.0	0.2	0.067	13.4	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|384432792|ref|YP_005642150.1|	-	0.035	14.0	0.0	0.077	12.9	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|384432792|ref|YP_005642150.1|	-	0.042	12.9	0.0	0.074	12.1	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
TsaE	PF02367.17	gi|384432792|ref|YP_005642150.1|	-	0.061	13.3	0.3	0.23	11.4	0.1	2.0	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_19	PF13245.6	gi|384432792|ref|YP_005642150.1|	-	0.07	13.5	0.5	0.56	10.5	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_11	PF13086.6	gi|384432792|ref|YP_005642150.1|	-	0.076	12.8	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|384432792|ref|YP_005642150.1|	-	0.092	12.0	0.1	0.13	11.5	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
GATase	PF00117.28	gi|384432793|ref|YP_005642151.1|	-	4.9e-37	127.5	0.0	6.6e-37	127.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|384432793|ref|YP_005642151.1|	-	1.3e-11	44.7	0.4	1.8e-10	41.0	0.4	2.4	1	1	1	2	2	2	1	Peptidase	C26
HTS	PF04204.16	gi|384432793|ref|YP_005642151.1|	-	0.021	13.8	0.0	0.03	13.3	0.0	1.3	1	1	0	1	1	1	0	Homoserine	O-succinyltransferase
PI3K_C2	PF00792.24	gi|384432793|ref|YP_005642151.1|	-	0.084	12.8	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	C2
ATPase	PF06745.13	gi|384432794|ref|YP_005642152.1|	-	1.7e-60	204.2	0.1	2e-60	204.0	0.1	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|384432794|ref|YP_005642152.1|	-	1.8e-08	34.2	0.0	3.5e-08	33.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|384432794|ref|YP_005642152.1|	-	1.7e-06	27.5	0.0	2.7e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|384432794|ref|YP_005642152.1|	-	4.6e-06	26.3	0.1	8.5e-06	25.4	0.0	1.5	2	0	0	2	2	1	1	recA	bacterial	DNA	recombination	protein
MEDS	PF14417.6	gi|384432794|ref|YP_005642152.1|	-	9.8e-06	25.5	0.0	1.5e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_14	PF13173.6	gi|384432794|ref|YP_005642152.1|	-	1.8e-05	24.7	0.1	0.0041	17.2	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
GvpD	PF07088.11	gi|384432794|ref|YP_005642152.1|	-	6.3e-05	21.8	0.1	0.0002	20.1	0.1	1.8	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.15	gi|384432794|ref|YP_005642152.1|	-	0.00014	21.3	0.0	0.00057	19.3	0.0	2.0	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.17	gi|384432794|ref|YP_005642152.1|	-	0.00024	20.9	0.0	0.00061	19.6	0.0	1.6	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|384432794|ref|YP_005642152.1|	-	0.0018	18.6	0.0	0.0066	16.8	0.0	1.9	1	1	1	2	2	2	1	RNA	helicase
AAA_22	PF13401.6	gi|384432794|ref|YP_005642152.1|	-	0.0031	17.8	0.0	0.0058	16.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|384432794|ref|YP_005642152.1|	-	0.0032	17.2	0.8	0.0069	16.1	0.1	1.9	2	2	1	3	3	3	1	AAA	domain
NACHT	PF05729.12	gi|384432794|ref|YP_005642152.1|	-	0.038	13.9	0.0	0.1	12.5	0.0	1.7	1	1	0	1	1	1	0	NACHT	domain
PAXNEB	PF05625.11	gi|384432794|ref|YP_005642152.1|	-	0.045	12.9	0.0	0.14	11.3	0.0	1.7	2	0	0	2	2	2	0	PAXNEB	protein
AAA	PF00004.29	gi|384432794|ref|YP_005642152.1|	-	0.056	13.9	0.1	0.16	12.4	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF5065	PF16723.5	gi|384432794|ref|YP_005642152.1|	-	0.086	12.9	0.1	0.17	11.9	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5065)
TsaE	PF02367.17	gi|384432794|ref|YP_005642152.1|	-	0.089	12.8	0.0	1.6	8.8	0.0	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
E3_UbLigase_EDD	PF11547.8	gi|384432794|ref|YP_005642152.1|	-	0.091	12.5	0.0	5.8	6.7	0.0	2.5	2	0	0	2	2	2	0	E3	ubiquitin	ligase	EDD
ResIII	PF04851.15	gi|384432794|ref|YP_005642152.1|	-	0.11	12.5	0.0	0.21	11.6	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|384432794|ref|YP_005642152.1|	-	0.11	12.8	0.7	0.57	10.5	0.7	2.2	1	1	0	1	1	1	0	AAA	domain
Y_phosphatase	PF00102.27	gi|384432795|ref|YP_005642153.1|	-	3.1e-09	36.7	0.0	3.5e-09	36.6	0.0	1.1	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
DSPc	PF00782.20	gi|384432795|ref|YP_005642153.1|	-	2.7e-08	33.7	0.0	3.6e-08	33.3	0.0	1.3	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
CDKN3	PF05706.12	gi|384432795|ref|YP_005642153.1|	-	2.8e-05	23.8	0.0	3.2e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
PTPlike_phytase	PF14566.6	gi|384432795|ref|YP_005642153.1|	-	0.0018	18.4	0.0	0.0021	18.2	0.0	1.2	1	0	0	1	1	1	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.6	gi|384432795|ref|YP_005642153.1|	-	0.0087	16.1	0.0	0.011	15.8	0.0	1.2	1	0	0	1	1	1	1	Tyrosine	phosphatase	family
DUF2459	PF09601.10	gi|384432795|ref|YP_005642153.1|	-	0.02	14.7	0.0	0.03	14.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2459)
Endonuclease_5	PF04493.14	gi|384432796|ref|YP_005642154.1|	-	1.1e-34	119.9	0.0	1.6e-34	119.3	0.0	1.2	1	0	0	1	1	1	1	Endonuclease	V
Isochorismatase	PF00857.20	gi|384432797|ref|YP_005642155.1|	-	4.9e-40	137.6	0.0	5.7e-40	137.4	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
DHHA1	PF02272.19	gi|384432798|ref|YP_005642156.1|	-	9.7e-10	39.0	0.1	4.6e-09	36.8	0.0	2.0	2	0	0	2	2	2	1	DHHA1	domain
DHH	PF01368.20	gi|384432798|ref|YP_005642156.1|	-	0.00022	21.4	0.0	0.00039	20.6	0.0	1.3	1	0	0	1	1	1	1	DHH	family
Metallophos	PF00149.28	gi|384432799|ref|YP_005642157.1|	-	3e-10	40.9	0.0	3.6e-10	40.7	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384432799|ref|YP_005642157.1|	-	9.8e-09	35.6	0.0	2.8e-08	34.1	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF763	PF05559.11	gi|384432800|ref|YP_005642158.1|	-	6.1e-123	410.0	0.0	7.3e-123	409.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
PhoU_div	PF01865.16	gi|384432801|ref|YP_005642159.1|	-	2.2e-15	56.6	10.7	2.5e-15	56.4	10.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
CdvA	PF18822.1	gi|384432801|ref|YP_005642159.1|	-	0.0085	15.9	5.6	0.014	15.2	1.4	3.1	3	1	1	4	4	4	1	CdvA-like	coiled-coil	domain
NES_C_h	PF18208.1	gi|384432801|ref|YP_005642159.1|	-	0.11	12.8	1.8	0.74	10.1	0.4	2.5	2	1	1	3	3	3	0	Nicking	enzyme	C-terminal	middle	helical	domain
RTC	PF01137.21	gi|384432801|ref|YP_005642159.1|	-	0.11	11.7	0.0	0.12	11.5	0.0	1.2	1	0	0	1	1	1	0	RNA	3'-terminal	phosphate	cyclase
PHO4	PF01384.20	gi|384432802|ref|YP_005642160.1|	-	5.1e-32	111.2	47.1	1.3e-22	80.3	32.8	2.9	1	1	1	2	2	2	2	Phosphate	transporter	family
RHH_1	PF01402.21	gi|384432803|ref|YP_005642161.1|	-	2.8e-08	33.4	0.0	4.4e-08	32.8	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|384432803|ref|YP_005642161.1|	-	0.011	15.9	0.4	0.046	13.9	0.2	1.8	1	1	1	2	2	2	0	Ribbon-Helix-Helix	transcriptional	regulator	family
DDE_Tnp_1	PF01609.21	gi|384432804|ref|YP_005642162.1|	-	4.1e-16	59.3	0.0	6.8e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DEAD	PF00270.29	gi|384432805|ref|YP_005642163.1|	-	1.1e-23	84.0	0.0	1.3e-22	80.4	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|384432805|ref|YP_005642163.1|	-	9.3e-13	48.5	0.0	4.1e-11	43.2	0.0	3.1	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|384432805|ref|YP_005642163.1|	-	1.7e-12	47.7	0.0	9.5e-12	45.2	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol_lambd_f	PF10391.9	gi|384432805|ref|YP_005642163.1|	-	2.5e-05	24.0	0.1	0.00012	21.8	0.0	2.2	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_5	PF14520.6	gi|384432805|ref|YP_005642163.1|	-	5.6e-05	23.7	0.6	0.00016	22.2	0.1	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
SNF2_N	PF00176.23	gi|384432805|ref|YP_005642163.1|	-	8.3e-05	21.5	0.0	0.00034	19.4	0.0	2.0	2	0	0	2	2	2	1	SNF2	family	N-terminal	domain
ATPase	PF06745.13	gi|384432805|ref|YP_005642163.1|	-	0.011	15.1	0.0	0.024	14.0	0.0	1.5	1	0	0	1	1	1	0	KaiC
HHH	PF00633.23	gi|384432805|ref|YP_005642163.1|	-	0.1	12.5	0.0	0.32	10.9	0.0	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Carboxyl_trans	PF01039.22	gi|384432807|ref|YP_005642165.1|	-	9.4e-181	601.8	0.6	1.1e-180	601.6	0.6	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|384432807|ref|YP_005642165.1|	-	0.0035	16.9	1.8	0.0055	16.2	0.0	2.1	2	1	1	3	3	3	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
Biotin_lipoyl	PF00364.22	gi|384432808|ref|YP_005642166.1|	-	3.7e-18	65.1	3.7	3.7e-18	65.1	3.7	2.0	2	0	0	2	2	2	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|384432808|ref|YP_005642166.1|	-	1.2e-14	53.8	11.9	3.6e-07	29.9	2.9	2.9	3	1	1	4	4	4	2	Biotin-lipoyl	like
HlyD_D23	PF16576.5	gi|384432808|ref|YP_005642166.1|	-	2.6e-08	33.3	0.1	0.0004	19.7	0.0	2.1	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
HlyD_3	PF13437.6	gi|384432808|ref|YP_005642166.1|	-	5.2e-07	30.3	1.2	0.013	16.2	0.0	2.6	2	0	0	2	2	2	2	HlyD	family	secretion	protein
GCV_H	PF01597.19	gi|384432808|ref|YP_005642166.1|	-	0.00035	20.5	0.4	0.0015	18.4	0.1	2.1	2	1	0	2	2	2	1	Glycine	cleavage	H-protein
PTS_EIIA_1	PF00358.20	gi|384432808|ref|YP_005642166.1|	-	0.00056	19.7	1.0	0.25	11.1	0.0	3.1	2	1	2	4	4	4	2	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
NQRA	PF05896.11	gi|384432808|ref|YP_005642166.1|	-	0.00059	19.3	2.4	0.0013	18.2	0.6	2.0	1	1	1	2	2	2	2	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
Peptidase_M23	PF01551.22	gi|384432808|ref|YP_005642166.1|	-	0.00062	19.9	0.9	0.44	10.8	0.0	2.6	1	1	1	2	2	2	2	Peptidase	family	M23
QRPTase_N	PF02749.16	gi|384432808|ref|YP_005642166.1|	-	0.00073	19.5	0.3	0.39	10.8	0.0	2.7	2	1	1	3	3	3	2	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
RnfC_N	PF13375.6	gi|384432808|ref|YP_005642166.1|	-	0.002	18.1	1.7	0.019	14.9	1.7	2.3	1	1	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
PYNP_C	PF07831.13	gi|384432808|ref|YP_005642166.1|	-	0.029	14.0	4.7	0.42	10.3	0.0	2.8	3	0	0	3	3	3	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
YqfD	PF06898.11	gi|384432808|ref|YP_005642166.1|	-	0.06	12.2	9.3	1	8.1	0.3	2.9	2	1	1	3	3	3	0	Putative	stage	IV	sporulation	protein	YqfD
CPSase_L_D2	PF02786.17	gi|384432809|ref|YP_005642167.1|	-	6.7e-67	225.1	0.0	1e-66	224.5	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|384432809|ref|YP_005642167.1|	-	7.1e-45	152.1	0.1	1.3e-44	151.2	0.1	1.5	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|384432809|ref|YP_005642167.1|	-	2.4e-36	124.1	0.0	4.2e-36	123.3	0.0	1.4	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|384432809|ref|YP_005642167.1|	-	6.5e-08	32.4	1.7	1.4e-07	31.2	0.1	2.4	3	1	0	3	3	3	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.22	gi|384432809|ref|YP_005642167.1|	-	0.0004	20.0	0.3	0.001	18.7	0.1	1.8	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|384432809|ref|YP_005642167.1|	-	0.00042	20.4	0.1	0.00069	19.7	0.1	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|384432809|ref|YP_005642167.1|	-	0.039	13.2	0.0	0.084	12.1	0.0	1.5	1	0	0	1	1	1	0	Sugar-transfer	associated	ATP-grasp
ATP-grasp_5	PF13549.6	gi|384432809|ref|YP_005642167.1|	-	0.04	13.4	0.0	0.079	12.4	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
Oxidored_nitro	PF00148.19	gi|384432809|ref|YP_005642167.1|	-	0.19	10.4	0.4	0.46	9.1	0.3	1.5	1	1	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
BPD_transp_1	PF00528.22	gi|384432810|ref|YP_005642168.1|	-	1.1e-18	67.7	48.8	1.6e-12	47.5	17.9	3.1	2	1	1	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|384432811|ref|YP_005642169.1|	-	1.5e-26	93.5	0.0	2.2e-26	93.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384432811|ref|YP_005642169.1|	-	4e-06	26.9	3.6	0.022	14.6	0.4	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|384432811|ref|YP_005642169.1|	-	0.00032	21.1	0.0	0.00061	20.2	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|384432811|ref|YP_005642169.1|	-	0.00065	19.2	0.1	0.17	11.3	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|384432811|ref|YP_005642169.1|	-	0.0014	18.6	0.1	0.0025	17.7	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|384432811|ref|YP_005642169.1|	-	0.0014	18.9	0.4	0.0059	16.9	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384432811|ref|YP_005642169.1|	-	0.0098	16.3	0.1	0.053	13.9	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|384432811|ref|YP_005642169.1|	-	0.018	14.8	0.1	0.044	13.5	0.0	1.7	2	0	0	2	2	1	0	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|384432811|ref|YP_005642169.1|	-	0.025	13.4	0.2	5.1	5.8	0.0	2.5	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
MMR_HSR1	PF01926.23	gi|384432811|ref|YP_005642169.1|	-	0.03	14.4	0.2	0.06	13.4	0.2	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|384432811|ref|YP_005642169.1|	-	0.036	13.8	0.0	0.088	12.5	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Rad17	PF03215.15	gi|384432811|ref|YP_005642169.1|	-	0.039	13.9	0.0	0.085	12.8	0.0	1.6	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|384432811|ref|YP_005642169.1|	-	0.042	14.4	0.1	0.071	13.6	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|384432811|ref|YP_005642169.1|	-	0.065	12.9	0.1	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|384432811|ref|YP_005642169.1|	-	0.068	13.3	0.1	0.085	13.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|384432811|ref|YP_005642169.1|	-	0.089	12.7	0.1	0.21	11.5	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_15	PF13175.6	gi|384432811|ref|YP_005642169.1|	-	0.1	12.3	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
Adeno_IVa2	PF02456.15	gi|384432811|ref|YP_005642169.1|	-	0.12	11.2	0.2	2.6	6.7	0.1	2.1	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
AAA_30	PF13604.6	gi|384432811|ref|YP_005642169.1|	-	0.13	11.9	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|384432811|ref|YP_005642169.1|	-	0.18	10.9	0.1	0.34	10.1	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Aconitase_C	PF00694.19	gi|384432813|ref|YP_005642171.1|	-	1.6e-22	80.2	0.0	2.2e-22	79.8	0.0	1.3	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.13	gi|384432813|ref|YP_005642171.1|	-	0.097	12.3	1.7	2.3	7.8	1.7	2.1	1	1	0	1	1	1	0	Aconitate	hydratase	2	N-terminus
Aconitase	PF00330.20	gi|384432814|ref|YP_005642172.1|	-	4.8e-73	246.7	2.1	1.3e-70	238.8	2.1	2.6	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|384432814|ref|YP_005642172.1|	-	0.0032	16.2	0.0	0.0047	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Phage_holin_2_4	PF16082.5	gi|384432814|ref|YP_005642172.1|	-	0.31	10.8	3.6	3.3	7.5	3.0	2.2	2	0	0	2	2	2	0	Bacteriophage	holin	family,	superfamily	II-like
FAD_binding_7	PF03441.14	gi|384432815|ref|YP_005642173.1|	-	8.1e-63	211.6	1.8	1.4e-62	210.8	1.8	1.4	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|384432815|ref|YP_005642173.1|	-	1.6e-31	109.5	0.0	7.8e-31	107.3	0.0	1.9	2	0	0	2	2	2	1	DNA	photolyase
Glyco_hydro_15	PF00723.21	gi|384432816|ref|YP_005642174.1|	-	2.6e-27	95.7	0.0	1.7e-16	60.1	0.0	3.1	2	1	1	3	3	3	3	Glycosyl	hydrolases	family	15
Glucodextran_N	PF09137.11	gi|384432816|ref|YP_005642174.1|	-	0.0048	16.5	0.0	0.0072	15.9	0.0	1.2	1	0	0	1	1	1	1	Glucodextranase,	domain	N
TrmB	PF01978.19	gi|384432817|ref|YP_005642175.1|	-	2.7e-09	36.8	0.9	4.2e-09	36.1	0.9	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|384432817|ref|YP_005642175.1|	-	4.6e-08	32.5	3.2	9.3e-08	31.5	3.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|384432817|ref|YP_005642175.1|	-	7.7e-07	28.9	6.1	1e-06	28.6	6.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_11	PF08279.12	gi|384432817|ref|YP_005642175.1|	-	2.7e-06	27.2	2.8	2.7e-06	27.2	2.8	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_Mga	PF08280.11	gi|384432817|ref|YP_005642175.1|	-	4.1e-05	23.5	3.4	4.1e-05	23.5	3.4	1.8	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_5	PF01022.20	gi|384432817|ref|YP_005642175.1|	-	0.00025	20.8	1.7	0.00046	20.0	1.7	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|384432817|ref|YP_005642175.1|	-	0.00052	19.9	0.6	0.00092	19.1	0.6	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|384432817|ref|YP_005642175.1|	-	0.00059	19.8	0.0	0.0029	17.5	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|384432817|ref|YP_005642175.1|	-	0.00064	19.6	0.0	0.001	18.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
RuvB_C	PF05491.13	gi|384432817|ref|YP_005642175.1|	-	0.0029	17.4	1.3	0.0061	16.4	1.2	1.7	1	1	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
GntR	PF00392.21	gi|384432817|ref|YP_005642175.1|	-	0.0033	17.0	0.3	0.0057	16.3	0.1	1.5	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|384432817|ref|YP_005642175.1|	-	0.0039	17.5	0.5	0.0074	16.6	0.5	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_34	PF13601.6	gi|384432817|ref|YP_005642175.1|	-	0.004	17.3	1.1	0.0065	16.6	1.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.16	gi|384432817|ref|YP_005642175.1|	-	0.0046	17.3	0.6	0.0061	16.9	0.6	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
GerE	PF00196.19	gi|384432817|ref|YP_005642175.1|	-	0.007	15.9	3.0	0.0075	15.8	1.6	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
Fe_dep_repress	PF01325.19	gi|384432817|ref|YP_005642175.1|	-	0.0078	16.4	0.9	0.015	15.5	0.9	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|384432817|ref|YP_005642175.1|	-	0.035	13.6	0.0	0.069	12.7	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_DeoR	PF08220.12	gi|384432817|ref|YP_005642175.1|	-	0.081	12.7	0.5	0.081	12.7	0.5	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_19	PF12844.7	gi|384432817|ref|YP_005642175.1|	-	0.12	12.4	2.5	0.12	12.4	1.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|384432818|ref|YP_005642176.1|	-	2.9e-29	100.9	2.6	3.6e-29	100.6	2.6	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF3116	PF11313.8	gi|384432818|ref|YP_005642176.1|	-	0.027	14.3	0.1	0.074	12.9	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3116)
CODH_A_N	PF18537.1	gi|384432818|ref|YP_005642176.1|	-	0.14	12.2	0.9	1.9	8.5	0.1	2.6	1	1	2	3	3	3	0	Carbon	monoxide	dehydrogenase	subunit	alpha	N-terminal	domain
DDE_Tnp_1	PF01609.21	gi|384432819|ref|YP_005642177.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF3311	PF11755.8	gi|384432820|ref|YP_005642178.1|	-	3.9e-16	58.7	3.3	4.3e-16	58.6	3.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
DUF4322	PF14210.6	gi|384432821|ref|YP_005642179.1|	-	4.7e-43	144.9	0.1	1.1e-42	143.7	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|384432821|ref|YP_005642179.1|	-	5.7e-08	32.7	0.0	9.4e-08	31.9	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
SIR2	PF02146.17	gi|384432822|ref|YP_005642180.1|	-	6.7e-51	172.7	0.0	8e-51	172.5	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
DUF768	PF05589.11	gi|384432823|ref|YP_005642181.1|	-	0.098	12.7	0.1	0.22	11.6	0.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF768)
NTP_transferase	PF00483.23	gi|384432824|ref|YP_005642182.1|	-	3e-30	105.6	0.0	4.3e-30	105.1	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|384432824|ref|YP_005642182.1|	-	2.1e-09	37.9	0.0	2.9e-09	37.5	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|384432824|ref|YP_005642182.1|	-	0.00035	20.4	0.0	0.00049	19.9	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4224	PF13986.6	gi|384432824|ref|YP_005642182.1|	-	0.0067	16.3	0.4	0.14	12.0	0.1	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4224)
DNA_binding_1	PF01035.20	gi|384432826|ref|YP_005642184.1|	-	7.6e-26	90.1	0.0	9.5e-26	89.7	0.0	1.1	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|384432826|ref|YP_005642184.1|	-	0.16	11.7	0.0	0.34	10.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
tRNA-synt_2b	PF00587.25	gi|384432827|ref|YP_005642185.1|	-	2e-39	135.4	0.0	3.8e-39	134.5	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|384432827|ref|YP_005642185.1|	-	1.2e-18	67.1	1.0	3.4e-18	65.6	1.0	1.8	1	0	0	1	1	1	1	Anticodon	binding	domain
Glyco_tran_28_C	PF04101.16	gi|384432828|ref|YP_005642186.1|	-	2.7e-07	30.7	0.1	7.9e-07	29.2	0.1	1.8	1	1	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
DUF4751	PF15942.5	gi|384432828|ref|YP_005642186.1|	-	0.025	14.5	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4751)
HhH-GPD	PF00730.25	gi|384432829|ref|YP_005642187.1|	-	5.1e-09	36.6	0.0	7.6e-09	36.0	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|384432829|ref|YP_005642187.1|	-	0.00091	19.0	0.0	0.0049	16.7	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|384432829|ref|YP_005642187.1|	-	0.0071	16.9	0.0	0.11	13.1	0.0	2.6	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
EndIII_4Fe-2S	PF10576.9	gi|384432829|ref|YP_005642187.1|	-	0.079	13.3	3.1	0.12	12.7	3.1	1.2	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_2	PF12826.7	gi|384432829|ref|YP_005642187.1|	-	0.086	12.9	0.0	0.37	10.9	0.0	2.0	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
ATP-grasp_2	PF08442.10	gi|384432830|ref|YP_005642188.1|	-	1.8e-29	102.8	0.9	3.9e-28	98.4	0.9	2.6	1	1	0	1	1	1	1	ATP-grasp	domain
Ligase_CoA	PF00549.19	gi|384432830|ref|YP_005642188.1|	-	7.4e-17	61.6	0.2	1.2e-16	60.9	0.2	1.3	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_5	PF13549.6	gi|384432830|ref|YP_005642188.1|	-	3.3e-05	23.5	0.0	0.055	12.9	0.1	3.1	2	1	0	2	2	2	2	ATP-grasp	domain
CoA_binding	PF02629.19	gi|384432831|ref|YP_005642189.1|	-	1.2e-22	80.3	8.5	1.6e-22	80.0	1.4	2.6	2	1	1	3	3	3	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|384432831|ref|YP_005642189.1|	-	6.5e-16	58.5	0.4	1.4e-15	57.5	0.2	1.6	2	0	0	2	2	2	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|384432831|ref|YP_005642189.1|	-	5e-12	45.8	0.0	1e-11	44.8	0.0	1.5	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|384432831|ref|YP_005642189.1|	-	2.5e-09	37.6	0.1	1e-08	35.7	0.1	1.9	2	0	0	2	2	2	1	CoA	binding	domain
LpxI_N	PF17930.1	gi|384432831|ref|YP_005642189.1|	-	0.09	12.7	1.0	1.1	9.2	0.1	2.7	3	0	0	3	3	3	0	LpxI	N-terminal	domain
2-Hacid_dh	PF00389.30	gi|384432831|ref|YP_005642189.1|	-	0.16	11.6	0.2	3.3	7.4	0.0	2.4	2	1	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
Syndecan	PF01034.20	gi|384432832|ref|YP_005642190.1|	-	0.086	12.8	1.4	0.22	11.5	1.4	1.7	1	0	0	1	1	1	0	Syndecan	domain
FeoB_associated	PF12669.7	gi|384432832|ref|YP_005642190.1|	-	6.7	7.2	6.2	15	6.1	6.2	1.6	1	0	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
Pex24p	PF06398.11	gi|384432833|ref|YP_005642191.1|	-	1.8	7.5	5.2	2	7.3	5.2	1.1	1	0	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
DUF2207	PF09972.9	gi|384432833|ref|YP_005642191.1|	-	4.1	6.1	6.7	4.8	5.8	6.7	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
SoxE	PF06525.11	gi|384432835|ref|YP_005642193.1|	-	6.8e-70	233.3	8.0	1.1e-69	232.6	8.0	1.3	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)	domain
SpoIIIAH	PF12685.7	gi|384432835|ref|YP_005642193.1|	-	0.027	14.3	0.2	0.035	14.0	0.2	1.2	1	0	0	1	1	1	0	SpoIIIAH-like	protein
DUF4834	PF16118.5	gi|384432835|ref|YP_005642193.1|	-	0.055	14.4	0.3	0.099	13.6	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
Shisa	PF13908.6	gi|384432835|ref|YP_005642193.1|	-	0.1	12.8	6.8	0.18	12.1	6.8	1.4	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Cu-oxidase_2	PF07731.14	gi|384432835|ref|YP_005642193.1|	-	0.12	12.2	3.0	1.3	8.7	0.3	2.7	1	1	1	2	2	2	0	Multicopper	oxidase
DUF4330	PF14221.6	gi|384432835|ref|YP_005642193.1|	-	1.1	9.4	4.0	3	8.1	4.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4330)
PsbN	PF02468.15	gi|384432835|ref|YP_005642193.1|	-	4	7.4	6.0	1.7	8.6	2.9	2.0	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
DUF2749	PF10907.8	gi|384432835|ref|YP_005642193.1|	-	6.4	7.0	10.2	1.3	9.2	5.8	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2749)
RTX	PF02382.15	gi|384432836|ref|YP_005642194.1|	-	1.1	8.9	2.8	1.6	8.3	2.8	1.2	1	0	0	1	1	1	0	N-terminal	domain	in	RTX	protein
DUF772	PF05598.11	gi|384432837|ref|YP_005642195.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384432837|ref|YP_005642195.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
AAA_31	PF13614.6	gi|384432839|ref|YP_005642197.1|	-	5.1e-07	29.8	1.6	6.7e-06	26.1	0.0	2.4	2	1	0	3	3	3	1	AAA	domain
CbiA	PF01656.23	gi|384432839|ref|YP_005642197.1|	-	2.5e-06	27.6	0.0	2.6e-06	27.5	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|384432839|ref|YP_005642197.1|	-	0.00086	18.8	0.1	0.0013	18.2	0.1	1.3	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|384432839|ref|YP_005642197.1|	-	0.025	13.8	0.2	0.067	12.4	0.0	1.7	2	0	0	2	2	2	0	Anion-transporting	ATPase
ADH_N	PF08240.12	gi|384432840|ref|YP_005642198.1|	-	3.7e-28	97.6	0.0	7.8e-28	96.5	0.0	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384432840|ref|YP_005642198.1|	-	7.1e-24	84.3	0.1	1.1e-23	83.6	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384432840|ref|YP_005642198.1|	-	1.1e-13	52.4	0.0	1.8e-13	51.7	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
LDcluster4	PF18306.1	gi|384432840|ref|YP_005642198.1|	-	0.00087	18.9	1.0	0.0016	18.0	1.0	1.4	1	0	0	1	1	1	1	SLOG	cluster4	family
AlaDh_PNT_C	PF01262.21	gi|384432840|ref|YP_005642198.1|	-	0.0037	16.6	3.0	0.007	15.7	3.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
THF_DHG_CYH_C	PF02882.19	gi|384432840|ref|YP_005642198.1|	-	0.0051	16.1	0.7	0.02	14.2	0.7	1.8	1	1	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
ELFV_dehydrog	PF00208.21	gi|384432840|ref|YP_005642198.1|	-	0.0054	16.5	1.3	0.0088	15.8	1.3	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
CMAS	PF02353.20	gi|384432840|ref|YP_005642198.1|	-	0.012	14.9	0.1	0.018	14.3	0.1	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Epimerase	PF01370.21	gi|384432840|ref|YP_005642198.1|	-	0.013	14.9	0.1	0.02	14.3	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
adh_short	PF00106.25	gi|384432840|ref|YP_005642198.1|	-	0.016	14.6	2.2	0.036	13.5	1.8	1.8	1	1	0	1	1	1	0	short	chain	dehydrogenase
Eno-Rase_NADH_b	PF12242.8	gi|384432840|ref|YP_005642198.1|	-	0.021	14.6	1.2	0.044	13.5	1.2	1.5	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Fibrillarin	PF01269.17	gi|384432840|ref|YP_005642198.1|	-	0.03	13.4	0.3	0.059	12.5	0.3	1.4	1	0	0	1	1	1	0	Fibrillarin
SIS_2	PF13580.6	gi|384432840|ref|YP_005642198.1|	-	0.04	14.0	0.6	0.095	12.7	0.6	1.6	1	0	0	1	1	1	0	SIS	domain
E1-N	PF14463.6	gi|384432840|ref|YP_005642198.1|	-	0.053	13.3	0.2	0.11	12.2	0.2	1.5	1	0	0	1	1	1	0	E1	N-terminal	domain
Thiolase_N	PF00108.23	gi|384432841|ref|YP_005642199.1|	-	6.1e-67	225.7	0.0	8.1e-67	225.3	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384432841|ref|YP_005642199.1|	-	2.1e-46	156.6	0.7	3.4e-45	152.7	0.3	2.5	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|384432841|ref|YP_005642199.1|	-	5.8e-07	29.4	0.4	1.2e-05	25.0	0.1	3.0	3	1	1	4	4	4	1	Beta-ketoacyl	synthase,	N-terminal	domain
SpoVAD	PF07451.11	gi|384432841|ref|YP_005642199.1|	-	0.0003	19.6	0.0	0.00063	18.5	0.0	1.4	1	0	0	1	1	1	1	Stage	V	sporulation	protein	AD	(SpoVAD)
Polysacc_deac_2	PF04748.13	gi|384432841|ref|YP_005642199.1|	-	0.15	11.2	0.0	0.26	10.4	0.0	1.3	1	0	0	1	1	1	0	Divergent	polysaccharide	deacetylase
Acyl-CoA_dh_1	PF00441.24	gi|384432842|ref|YP_005642200.1|	-	7.6e-14	52.2	0.0	2e-13	50.8	0.0	1.7	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|384432842|ref|YP_005642200.1|	-	0.0042	17.4	0.0	0.0067	16.7	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Ribonuc_red_sm	PF00268.21	gi|384432843|ref|YP_005642201.1|	-	9.5e-24	84.3	0.0	1.3e-23	83.9	0.0	1.2	1	0	0	1	1	1	1	Ribonucleotide	reductase,	small	chain
DUF455	PF04305.14	gi|384432843|ref|YP_005642201.1|	-	6.2e-05	22.7	0.1	0.095	12.2	0.1	2.1	1	1	0	2	2	2	2	Protein	of	unknown	function	(DUF455)
Rubrerythrin	PF02915.17	gi|384432843|ref|YP_005642201.1|	-	0.00048	20.5	0.2	0.99	9.8	0.0	2.5	2	0	0	2	2	2	2	Rubrerythrin
PHB_depo_C	PF06850.11	gi|384432843|ref|YP_005642201.1|	-	0.11	12.0	0.1	3.9	6.9	0.0	2.2	2	0	0	2	2	2	0	PHB	de-polymerase	C-terminus
E2F_TDP	PF02319.20	gi|384432843|ref|YP_005642201.1|	-	0.12	12.4	0.0	1.1	9.4	0.0	2.3	2	0	0	2	2	2	0	E2F/DP	family	winged-helix	DNA-binding	domain
adh_short	PF00106.25	gi|384432844|ref|YP_005642202.1|	-	1.4e-51	174.8	1.3	1.9e-51	174.3	1.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|384432844|ref|YP_005642202.1|	-	4.5e-49	167.1	0.3	5.5e-49	166.8	0.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|384432844|ref|YP_005642202.1|	-	4.9e-10	39.6	0.2	6.9e-10	39.1	0.2	1.2	1	0	0	1	1	1	1	KR	domain
Alba	PF01918.21	gi|384432844|ref|YP_005642202.1|	-	0.081	12.7	0.1	0.27	11.1	0.1	1.8	1	0	0	1	1	1	0	Alba
ApbA	PF02558.16	gi|384432844|ref|YP_005642202.1|	-	0.12	12.0	0.1	0.18	11.4	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_7	PF13241.6	gi|384432844|ref|YP_005642202.1|	-	0.27	11.7	1.5	0.47	10.9	0.9	1.9	2	1	0	2	2	2	0	Putative	NAD(P)-binding
ADH_N	PF08240.12	gi|384432845|ref|YP_005642203.1|	-	6.8e-31	106.4	0.2	1.1e-30	105.7	0.2	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384432845|ref|YP_005642203.1|	-	2.1e-24	86.0	0.0	3.4e-24	85.3	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|384432845|ref|YP_005642203.1|	-	1.7e-05	24.3	0.0	2.8e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Glu_dehyd_C	PF16912.5	gi|384432845|ref|YP_005642203.1|	-	2.3e-05	24.0	0.2	6.9e-05	22.4	0.2	1.7	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
AlaDh_PNT_C	PF01262.21	gi|384432845|ref|YP_005642203.1|	-	2.8e-05	23.5	0.1	4.3e-05	22.9	0.1	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.18	gi|384432845|ref|YP_005642203.1|	-	0.00035	20.8	0.2	0.00062	20.0	0.2	1.4	1	0	0	1	1	1	1	TrkA-N	domain
PALP	PF00291.25	gi|384432845|ref|YP_005642203.1|	-	0.00092	18.7	0.2	0.0015	18.0	0.2	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Sacchrp_dh_NADP	PF03435.18	gi|384432845|ref|YP_005642203.1|	-	0.0022	18.2	0.1	0.0037	17.5	0.1	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ThiF	PF00899.21	gi|384432845|ref|YP_005642203.1|	-	0.0025	17.2	0.0	0.0039	16.6	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
ELFV_dehydrog	PF00208.21	gi|384432845|ref|YP_005642203.1|	-	0.0053	16.5	0.2	0.01	15.6	0.2	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
PglD_N	PF17836.1	gi|384432845|ref|YP_005642203.1|	-	0.016	15.8	2.3	0.016	15.8	0.1	2.2	3	0	0	3	3	2	0	PglD	N-terminal	domain
Methyltransf_25	PF13649.6	gi|384432845|ref|YP_005642203.1|	-	0.024	15.3	0.0	0.047	14.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384432845|ref|YP_005642203.1|	-	0.026	14.1	0.1	0.04	13.5	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Methyltransf_15	PF09445.10	gi|384432845|ref|YP_005642203.1|	-	0.038	13.6	0.0	0.063	12.8	0.0	1.4	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
IlvN	PF07991.12	gi|384432845|ref|YP_005642203.1|	-	0.056	13.0	0.2	0.12	12.0	0.1	1.6	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Urocanase	PF01175.18	gi|384432845|ref|YP_005642203.1|	-	0.1	12.2	2.0	0.12	12.0	0.2	1.8	2	0	0	2	2	2	0	Urocanase	Rossmann-like	domain
PK_C	PF02887.16	gi|384432845|ref|YP_005642203.1|	-	0.13	12.5	0.0	0.23	11.7	0.0	1.4	1	0	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
3HCDH_N	PF02737.18	gi|384432845|ref|YP_005642203.1|	-	0.15	12.0	0.2	0.28	11.1	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF3211	PF11485.8	gi|384432846|ref|YP_005642204.1|	-	1.3e-38	132.3	0.6	1.4e-38	132.1	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
HpaB_N	PF11794.8	gi|384432847|ref|YP_005642205.1|	-	2.2e-83	280.1	0.7	3.2e-83	279.6	0.7	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|384432847|ref|YP_005642205.1|	-	5.9e-53	179.0	0.2	8.7e-53	178.4	0.2	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Acyl-CoA_dh_M	PF02770.19	gi|384432847|ref|YP_005642205.1|	-	0.0042	17.3	0.0	0.014	15.6	0.0	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Sugar_tr	PF00083.24	gi|384432848|ref|YP_005642206.1|	-	2.4e-43	148.7	26.3	2.7e-43	148.5	26.3	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384432848|ref|YP_005642206.1|	-	1.5e-33	116.2	52.2	1.2e-26	93.5	29.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|384432848|ref|YP_005642206.1|	-	3.1e-07	30.0	10.1	3.1e-07	30.0	10.1	2.0	2	1	1	3	3	3	1	Uncharacterised	MFS-type	transporter	YbfB
TetR_N	PF00440.23	gi|384432849|ref|YP_005642207.1|	-	9.1e-14	51.0	0.0	1.7e-13	50.2	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
SCP2	PF02036.17	gi|384432850|ref|YP_005642208.1|	-	0.007	16.8	0.0	0.018	15.5	0.0	1.7	1	1	0	1	1	1	1	SCP-2	sterol	transfer	family
Thiolase_N	PF00108.23	gi|384432851|ref|YP_005642209.1|	-	0.00025	20.5	0.0	0.00037	19.9	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384432851|ref|YP_005642209.1|	-	0.00094	18.8	0.1	0.0092	15.6	0.0	2.2	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
DUF35_N	PF12172.8	gi|384432852|ref|YP_005642210.1|	-	5.2e-09	35.8	0.2	7.6e-09	35.3	0.2	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|384432852|ref|YP_005642210.1|	-	0.00027	20.9	0.0	0.00041	20.3	0.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
HypA	PF01155.19	gi|384432852|ref|YP_005642210.1|	-	0.0004	20.4	0.1	0.00073	19.5	0.1	1.4	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TFIIS_C	PF01096.18	gi|384432852|ref|YP_005642210.1|	-	0.00046	20.0	1.1	0.051	13.4	0.1	2.3	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
TackOD1	PF18551.1	gi|384432852|ref|YP_005642210.1|	-	0.00064	19.4	0.5	0.0011	18.7	0.2	1.5	2	0	0	2	2	2	1	Thaumarchaeal	output	domain	1
FdhE	PF04216.12	gi|384432852|ref|YP_005642210.1|	-	0.0032	17.4	0.1	0.0047	16.9	0.1	1.2	1	0	0	1	1	1	1	Protein	involved	in	formate	dehydrogenase	formation
zf-ribbon_3	PF13248.6	gi|384432852|ref|YP_005642210.1|	-	0.0046	16.3	1.7	1.4	8.4	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc-ribbon_6	PF10005.9	gi|384432852|ref|YP_005642210.1|	-	0.0064	17.1	0.1	0.0075	16.9	0.1	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|384432852|ref|YP_005642210.1|	-	0.0065	16.2	0.6	0.13	12.0	0.1	2.3	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|384432852|ref|YP_005642210.1|	-	0.012	15.1	0.5	0.26	10.8	0.1	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|384432852|ref|YP_005642210.1|	-	0.02	14.6	2.8	2.6	7.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
NRDD	PF13597.6	gi|384432852|ref|YP_005642210.1|	-	0.02	13.7	0.4	0.031	13.1	0.4	1.2	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zinc_ribbon_4	PF13717.6	gi|384432852|ref|YP_005642210.1|	-	0.026	14.4	2.6	0.64	10.0	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|384432852|ref|YP_005642210.1|	-	0.029	14.4	0.4	0.042	13.9	0.4	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L32p	PF01783.23	gi|384432852|ref|YP_005642210.1|	-	0.066	13.5	0.4	0.11	12.8	0.4	1.3	1	0	0	1	1	1	0	Ribosomal	L32p	protein	family
eIF-5_eIF-2B	PF01873.17	gi|384432852|ref|YP_005642210.1|	-	0.068	13.1	1.2	9.3	6.2	0.1	2.5	2	1	1	3	3	3	0	Domain	found	in	IF2B/IF5
zinc_ribbon_13	PF09855.9	gi|384432852|ref|YP_005642210.1|	-	0.073	13.2	3.1	4.6	7.5	0.5	2.4	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Zn_Tnp_IS1595	PF12760.7	gi|384432852|ref|YP_005642210.1|	-	0.084	12.9	3.2	0.64	10.0	0.1	2.3	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384432852|ref|YP_005642210.1|	-	0.1	12.7	4.8	0.61	10.3	4.8	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF2387	PF09526.10	gi|384432852|ref|YP_005642210.1|	-	0.13	12.4	1.0	18	5.6	0.1	2.4	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zf-HYPF	PF07503.12	gi|384432852|ref|YP_005642210.1|	-	0.23	11.3	5.4	3	7.7	0.3	2.3	1	1	1	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.6	gi|384432852|ref|YP_005642210.1|	-	0.51	10.1	2.9	10	6.0	0.3	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|384432852|ref|YP_005642210.1|	-	1.4	8.6	5.9	0.9	9.3	1.0	2.4	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-NADH-PPase	PF09297.11	gi|384432852|ref|YP_005642210.1|	-	1.5	8.6	4.5	11	5.8	0.4	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|384432852|ref|YP_005642210.1|	-	1.9	8.3	5.2	6.5	6.6	5.2	1.8	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
FYDLN_acid	PF09538.10	gi|384432852|ref|YP_005642210.1|	-	3.7	8.3	4.0	8.4	7.1	4.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
zf-C2HC_2	PF13913.6	gi|384432852|ref|YP_005642210.1|	-	3.9	7.5	7.9	9.4	6.3	1.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
AMP-binding	PF00501.28	gi|384432854|ref|YP_005642212.1|	-	2.1e-85	286.9	0.0	2.5e-85	286.6	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384432854|ref|YP_005642212.1|	-	1.9e-22	80.0	0.0	4.7e-22	78.8	0.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|384432855|ref|YP_005642213.1|	-	5.7e-23	81.7	0.4	1.1e-22	80.8	0.1	1.6	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|384432855|ref|YP_005642213.1|	-	5e-20	71.5	0.0	9.7e-20	70.6	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_1	PF00441.24	gi|384432855|ref|YP_005642213.1|	-	1.6e-17	64.1	0.3	1.2e-12	48.3	0.1	2.3	1	1	1	2	2	2	2	Acyl-CoA	dehydrogenase,	C-terminal	domain
ECH_1	PF00378.20	gi|384432856|ref|YP_005642214.1|	-	3.1e-67	226.5	0.0	4.8e-67	225.9	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH_N	PF02737.18	gi|384432856|ref|YP_005642214.1|	-	7.8e-64	214.9	0.2	1.3e-63	214.2	0.2	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|384432856|ref|YP_005642214.1|	-	2.3e-48	162.7	0.1	1.6e-25	89.5	0.0	2.8	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|384432856|ref|YP_005642214.1|	-	7.1e-41	140.8	0.0	4.8e-38	131.5	0.0	2.3	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
NAD_binding_2	PF03446.15	gi|384432856|ref|YP_005642214.1|	-	0.0019	18.4	0.0	0.0038	17.4	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
SPOUT_MTase_2	PF14419.6	gi|384432856|ref|YP_005642214.1|	-	0.023	14.1	0.3	2.9	7.2	0.1	2.5	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Pyr_redox_2	PF07992.14	gi|384432856|ref|YP_005642214.1|	-	0.029	13.6	0.1	0.059	12.6	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|384432856|ref|YP_005642214.1|	-	0.053	12.8	0.0	0.098	11.9	0.0	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Med9	PF07544.13	gi|384432856|ref|YP_005642214.1|	-	0.064	13.4	0.2	0.15	12.2	0.2	1.6	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
2-Hacid_dh_C	PF02826.19	gi|384432856|ref|YP_005642214.1|	-	0.09	12.1	0.0	0.21	11.0	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Lactamase_B	PF00753.27	gi|384432857|ref|YP_005642215.1|	-	5.4e-25	88.6	0.0	8.5e-25	87.9	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384432857|ref|YP_005642215.1|	-	0.0023	17.5	0.0	0.0055	16.2	0.0	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
CTK3_C	PF12350.8	gi|384432857|ref|YP_005642215.1|	-	0.015	15.4	0.5	0.034	14.3	0.5	1.5	1	0	0	1	1	1	0	CTD	kinase	subunit	gamma	CTK3	C-terminus
Lactamase_B_3	PF13483.6	gi|384432857|ref|YP_005642215.1|	-	0.091	12.7	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Hpr_kinase_N	PF02603.16	gi|384432857|ref|YP_005642215.1|	-	0.12	12.4	0.2	0.38	10.8	0.1	1.9	1	1	0	1	1	1	0	HPr	Serine	kinase	N	terminus
Terminase_4	PF05119.12	gi|384432857|ref|YP_005642215.1|	-	0.16	12.4	0.0	3.7	8.0	0.0	2.5	3	0	0	3	3	3	0	Phage	terminase,	small	subunit
SF3a60_bindingd	PF12108.8	gi|384432857|ref|YP_005642215.1|	-	0.42	10.5	3.0	1.3	9.0	3.0	1.9	1	0	0	1	1	1	0	Splicing	factor	SF3a60	binding	domain
Sugar_tr	PF00083.24	gi|384432858|ref|YP_005642216.1|	-	2e-40	139.0	21.6	2.4e-40	138.7	21.6	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384432858|ref|YP_005642216.1|	-	1.2e-31	109.9	34.8	1.2e-31	109.9	34.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|384432858|ref|YP_005642216.1|	-	1.2e-08	34.7	10.0	1.2e-08	34.7	10.0	1.9	2	0	0	2	2	2	1	Uncharacterised	MFS-type	transporter	YbfB
DNA_ligase_C	PF17879.1	gi|384432858|ref|YP_005642216.1|	-	0.12	12.4	0.1	0.29	11.2	0.1	1.6	1	0	0	1	1	1	0	DNA	ligase	C-terminal	domain
NADH-u_ox-rdase	PF10785.9	gi|384432858|ref|YP_005642216.1|	-	0.32	11.7	5.9	6.5	7.5	0.4	3.4	2	1	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
Abhydrolase_3	PF07859.13	gi|384432859|ref|YP_005642217.1|	-	1.7e-66	224.1	0.0	2.9e-66	223.3	0.0	1.4	2	0	0	2	2	2	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|384432859|ref|YP_005642217.1|	-	6.1e-14	51.8	0.0	1.7e-13	50.3	0.0	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
Chlorophyllase2	PF12740.7	gi|384432859|ref|YP_005642217.1|	-	0.00037	19.5	0.0	0.00052	19.0	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
AXE1	PF05448.12	gi|384432859|ref|YP_005642217.1|	-	0.0011	17.7	0.1	0.77	8.4	0.0	2.1	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Say1_Mug180	PF10340.9	gi|384432859|ref|YP_005642217.1|	-	0.0027	16.7	0.0	0.0034	16.3	0.0	1.3	1	0	0	1	1	1	1	Steryl	acetyl	hydrolase
Peptidase_S9	PF00326.21	gi|384432859|ref|YP_005642217.1|	-	0.082	12.4	0.0	0.11	12.0	0.0	1.3	1	1	0	1	1	1	0	Prolyl	oligopeptidase	family
Hydrolase_4	PF12146.8	gi|384432860|ref|YP_005642218.1|	-	2.5e-09	36.8	0.0	5.3e-09	35.7	0.0	1.4	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|384432860|ref|YP_005642218.1|	-	6.4e-07	30.2	0.0	8e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|384432860|ref|YP_005642218.1|	-	1.8e-06	27.8	0.0	2.7e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.7	gi|384432860|ref|YP_005642218.1|	-	0.012	15.4	0.0	0.034	13.9	0.0	1.7	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
Lactamase_B	PF00753.27	gi|384432861|ref|YP_005642219.1|	-	2.2e-28	99.6	0.0	2.8e-28	99.3	0.0	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384432861|ref|YP_005642219.1|	-	0.13	11.8	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
FAA_hydrolase	PF01557.18	gi|384432862|ref|YP_005642220.1|	-	2.6e-53	180.9	0.0	3.3e-53	180.6	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Abhydrolase_3	PF07859.13	gi|384432863|ref|YP_005642221.1|	-	3e-72	242.9	0.0	3.6e-72	242.6	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Say1_Mug180	PF10340.9	gi|384432863|ref|YP_005642221.1|	-	4.3e-09	35.7	0.4	6.1e-09	35.2	0.4	1.2	1	0	0	1	1	1	1	Steryl	acetyl	hydrolase
COesterase	PF00135.28	gi|384432863|ref|YP_005642221.1|	-	3.1e-06	26.4	1.4	1.4e-05	24.2	1.4	1.8	1	1	0	1	1	1	1	Carboxylesterase	family
Peptidase_S9	PF00326.21	gi|384432863|ref|YP_005642221.1|	-	6.3e-06	25.8	0.1	9.7e-06	25.2	0.1	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Chlorophyllase2	PF12740.7	gi|384432863|ref|YP_005642221.1|	-	2.8e-05	23.2	0.0	4.1e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
AXE1	PF05448.12	gi|384432863|ref|YP_005642221.1|	-	5.3e-05	22.0	0.6	0.1	11.2	0.1	2.2	1	1	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Peptidase_S15	PF02129.18	gi|384432863|ref|YP_005642221.1|	-	0.00034	20.3	0.1	0.0083	15.7	0.1	2.3	2	1	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Esterase	PF00756.20	gi|384432863|ref|YP_005642221.1|	-	0.016	14.9	0.4	0.12	12.0	0.4	2.2	1	1	0	1	1	1	0	Putative	esterase
PAF-AH_p_II	PF03403.13	gi|384432863|ref|YP_005642221.1|	-	0.091	11.3	0.1	0.89	8.0	0.0	2.0	1	1	1	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
PTE	PF02126.18	gi|384432864|ref|YP_005642222.1|	-	3.8e-79	266.2	0.0	4.3e-79	266.0	0.0	1.0	1	0	0	1	1	1	1	Phosphotriesterase	family
AMP-binding	PF00501.28	gi|384432865|ref|YP_005642223.1|	-	4.4e-107	358.3	0.0	5.3e-107	358.0	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384432865|ref|YP_005642223.1|	-	1.5e-19	70.7	0.1	2.8e-19	69.8	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
COXG	PF06240.13	gi|384432866|ref|YP_005642224.1|	-	3.4e-46	156.5	0.2	3.8e-46	156.3	0.2	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DAO	PF01266.24	gi|384432867|ref|YP_005642225.1|	-	2e-53	182.3	0.0	2.3e-53	182.1	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|384432867|ref|YP_005642225.1|	-	4.1e-06	26.1	0.3	0.0036	16.5	0.2	2.1	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|384432867|ref|YP_005642225.1|	-	3e-05	23.5	0.2	0.00013	21.3	0.2	1.9	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|384432867|ref|YP_005642225.1|	-	5.7e-05	23.3	1.6	0.00018	21.6	0.6	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|384432867|ref|YP_005642225.1|	-	6.6e-05	22.3	0.7	0.00041	19.7	0.7	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|384432867|ref|YP_005642225.1|	-	0.00092	18.4	2.9	0.047	12.8	0.4	2.2	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|384432867|ref|YP_005642225.1|	-	0.0011	19.4	3.9	0.024	15.2	0.6	3.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384432867|ref|YP_005642225.1|	-	0.0015	17.3	1.0	0.0019	17.0	0.2	1.5	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384432867|ref|YP_005642225.1|	-	0.01	15.2	0.7	0.18	11.1	0.1	2.1	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384432867|ref|YP_005642225.1|	-	0.039	13.2	0.4	0.096	11.9	0.1	1.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|384432867|ref|YP_005642225.1|	-	0.085	12.5	0.4	0.2	11.3	0.3	1.7	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.18	gi|384432867|ref|YP_005642225.1|	-	0.14	12.1	3.4	0.23	11.3	0.4	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Mqo	PF06039.15	gi|384432867|ref|YP_005642225.1|	-	0.14	10.7	0.0	0.21	10.1	0.0	1.2	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
UDPG_MGDP_dh_N	PF03721.14	gi|384432867|ref|YP_005642225.1|	-	0.17	11.4	2.5	0.15	11.6	0.7	1.8	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Thi4	PF01946.17	gi|384432867|ref|YP_005642225.1|	-	4.6	6.4	6.1	2.6	7.2	0.7	2.5	1	1	1	2	2	2	0	Thi4	family
Amidohydro_1	PF01979.20	gi|384432868|ref|YP_005642226.1|	-	1.5e-65	221.8	0.1	1.8e-65	221.5	0.1	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|384432868|ref|YP_005642226.1|	-	3.8e-20	72.8	0.0	1.6e-11	44.4	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
AP_endonuc_2	PF01261.24	gi|384432868|ref|YP_005642226.1|	-	0.091	12.2	0.1	1	8.8	0.0	2.1	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
MFS_1	PF07690.16	gi|384432869|ref|YP_005642227.1|	-	3.5e-27	95.2	60.7	1.6e-16	60.2	37.7	2.7	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384432869|ref|YP_005642227.1|	-	5.3e-27	94.8	38.5	9e-19	67.7	15.5	2.0	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
Nuc_H_symport	PF03825.16	gi|384432869|ref|YP_005642227.1|	-	0.0017	17.4	15.3	0.0017	17.4	15.3	1.7	2	0	0	2	2	2	1	Nucleoside	H+	symporter
TNFR_16_TM	PF18422.1	gi|384432869|ref|YP_005642227.1|	-	0.023	14.6	0.2	0.13	12.2	0.2	2.4	1	0	0	1	1	1	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
MFS_2	PF13347.6	gi|384432869|ref|YP_005642227.1|	-	0.036	12.6	40.7	0.21	10.1	0.7	3.1	2	1	1	3	3	3	0	MFS/sugar	transport	protein
NTP_transf_2	PF01909.23	gi|384432871|ref|YP_005642229.1|	-	1.2e-11	44.8	0.6	1.7e-11	44.3	0.6	1.4	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384432871|ref|YP_005642229.1|	-	8.1e-07	29.0	0.2	1.3e-06	28.4	0.2	1.5	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|384432871|ref|YP_005642229.1|	-	0.056	13.3	0.0	0.075	12.8	0.0	1.3	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
Adenyl_cycl_N	PF12633.7	gi|384432871|ref|YP_005642229.1|	-	0.068	13.1	0.0	0.12	12.2	0.0	1.5	1	1	0	1	1	1	0	Adenylate	cyclase	NT	domain
HEPN	PF05168.14	gi|384432872|ref|YP_005642230.1|	-	8.8e-37	125.8	3.1	1e-36	125.6	3.1	1.0	1	0	0	1	1	1	1	HEPN	domain
DUF5633	PF18656.1	gi|384432872|ref|YP_005642230.1|	-	0.036	14.0	4.8	0.09	12.7	0.3	2.7	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5633)
Metallophos_2	PF12850.7	gi|384432873|ref|YP_005642231.1|	-	4.8e-10	39.9	0.0	8.8e-10	39.0	0.0	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|384432873|ref|YP_005642231.1|	-	5.2e-05	23.8	0.4	0.0002	21.9	0.3	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
UPF0047	PF01894.17	gi|384432874|ref|YP_005642232.1|	-	7.8e-35	119.5	0.1	9e-35	119.3	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
Luciferase_N	PF05295.11	gi|384432874|ref|YP_005642232.1|	-	0.034	14.2	0.0	0.067	13.2	0.0	1.5	1	1	0	1	1	1	0	Luciferase/LBP	N-terminal	domain
GP3_package	PF16677.5	gi|384432874|ref|YP_005642232.1|	-	0.077	13.1	0.1	0.15	12.2	0.1	1.5	1	1	1	2	2	2	0	DNA-packaging	protein	gp3
Glyco_hydro_12	PF01670.16	gi|384432875|ref|YP_005642233.1|	-	1.7e-12	47.8	4.0	2.5e-12	47.3	4.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	12
LPD24	PF18839.1	gi|384432875|ref|YP_005642233.1|	-	0.016	15.4	0.4	0.051	13.8	0.0	2.0	1	1	1	2	2	2	0	Large	polyvalent	protein	associated	domain	24
ECH_1	PF00378.20	gi|384432876|ref|YP_005642234.1|	-	1.9e-47	161.7	0.0	2.2e-47	161.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|384432876|ref|YP_005642234.1|	-	8.7e-38	130.6	0.0	9.9e-38	130.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
DUF1414	PF07208.11	gi|384432876|ref|YP_005642234.1|	-	0.15	12.1	0.0	0.3	11.1	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1414)
ADH_N	PF08240.12	gi|384432877|ref|YP_005642235.1|	-	7.5e-35	119.1	0.3	1.4e-34	118.3	0.3	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384432877|ref|YP_005642235.1|	-	8.9e-27	93.6	0.4	1.4e-26	93.0	0.4	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384432877|ref|YP_005642235.1|	-	1.2e-15	58.7	0.0	2.4e-15	57.7	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Methyltransf_31	PF13847.6	gi|384432877|ref|YP_005642235.1|	-	1.7e-05	24.7	0.0	2.7e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384432877|ref|YP_005642235.1|	-	0.00027	21.6	0.1	0.0005	20.7	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
DapB_N	PF01113.20	gi|384432877|ref|YP_005642235.1|	-	0.0013	18.9	0.4	0.0025	18.0	0.4	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Methyltransf_12	PF08242.12	gi|384432877|ref|YP_005642235.1|	-	0.0026	18.5	0.0	0.0048	17.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|384432877|ref|YP_005642235.1|	-	0.01	15.8	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.14	gi|384432877|ref|YP_005642235.1|	-	0.011	15.3	0.2	0.022	14.3	0.2	1.5	1	0	0	1	1	1	0	Methyltransferase	small	domain
TrkA_N	PF02254.18	gi|384432877|ref|YP_005642235.1|	-	0.019	15.2	0.2	0.039	14.2	0.2	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Urocanase	PF01175.18	gi|384432877|ref|YP_005642235.1|	-	0.027	14.1	0.1	0.04	13.6	0.1	1.2	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
Methyltransf_11	PF08241.12	gi|384432877|ref|YP_005642235.1|	-	0.03	15.0	0.3	0.081	13.6	0.3	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|384432877|ref|YP_005642235.1|	-	0.05	13.1	0.1	0.099	12.1	0.1	1.5	1	0	0	1	1	1	0	Putative	methyltransferase
CMAS	PF02353.20	gi|384432877|ref|YP_005642235.1|	-	0.094	12.0	0.0	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
ACP_syn_III_C	PF08541.10	gi|384432877|ref|YP_005642235.1|	-	0.13	12.4	0.0	0.54	10.5	0.0	2.1	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
PEPCK_GTP	PF00821.18	gi|384432878|ref|YP_005642236.1|	-	4.5e-103	344.8	0.0	5.4e-103	344.6	0.0	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	C-terminal	P-loop	domain
PEPCK_N	PF17297.2	gi|384432878|ref|YP_005642236.1|	-	3.9e-62	209.7	0.0	5.2e-62	209.3	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase	N-terminal	domain
Arc_PepC_II	PF06847.11	gi|384432878|ref|YP_005642236.1|	-	1.7	9.2	4.7	6.3	7.4	0.9	3.0	3	0	0	3	3	3	0	Archaeal	Peptidase	A24	C-terminus	Type	II
Glycos_transf_1	PF00534.20	gi|384432879|ref|YP_005642237.1|	-	5.6e-11	42.3	0.0	1e-10	41.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Phosphorylase	PF00343.20	gi|384432879|ref|YP_005642237.1|	-	4.5e-08	31.9	0.3	7.9e-06	24.5	0.0	2.1	1	1	1	2	2	2	2	Carbohydrate	phosphorylase
Glyco_trans_1_4	PF13692.6	gi|384432879|ref|YP_005642237.1|	-	0.00031	21.2	0.0	0.00078	19.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
DDE_Tnp_1	PF01609.21	gi|384432881|ref|YP_005642239.1|	-	2.2e-16	60.2	0.0	2.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Spore_GerAC	PF05504.11	gi|384432882|ref|YP_005642240.1|	-	0.055	13.7	0.3	0.055	13.7	0.3	1.7	2	0	0	2	2	2	0	Spore	germination	B3/	GerAC	like,	C-terminal
Transposase_20	PF02371.16	gi|384432883|ref|YP_005642241.1|	-	1.5e-26	92.5	0.0	2.7e-26	91.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384432883|ref|YP_005642241.1|	-	2.1e-16	60.2	0.0	3.9e-16	59.3	0.0	1.4	1	0	0	1	1	1	1	Transposase
DUF2291	PF10054.9	gi|384432884|ref|YP_005642242.1|	-	0.14	11.9	2.7	0.18	11.5	2.7	1.2	1	0	0	1	1	1	0	Predicted	periplasmic	lipoprotein	(DUF2291)
SurA_N_3	PF13624.6	gi|384432884|ref|YP_005642242.1|	-	0.5	10.2	2.7	0.59	9.9	2.1	1.5	1	1	0	1	1	1	0	SurA	N-terminal	domain
DDE_Tnp_1	PF01609.21	gi|384432885|ref|YP_005642243.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
FixQ	PF05545.11	gi|384432887|ref|YP_005642245.1|	-	0.28	11.2	0.2	0.28	11.2	0.2	2.0	2	0	0	2	2	2	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF772	PF05598.11	gi|384432888|ref|YP_005642246.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384432888|ref|YP_005642246.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
AA_permease_2	PF13520.6	gi|384432889|ref|YP_005642247.1|	-	1.4e-19	70.2	59.5	1.8e-19	69.9	59.5	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384432889|ref|YP_005642247.1|	-	1.8e-08	33.5	46.6	2.6e-08	32.9	46.6	1.2	1	0	0	1	1	1	1	Amino	acid	permease
zf-C2H2_4	PF13894.6	gi|384432890|ref|YP_005642248.1|	-	0.0083	16.9	0.7	0.019	15.8	0.7	1.6	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|384432890|ref|YP_005642248.1|	-	0.029	14.8	0.3	0.062	13.8	0.3	1.6	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf_ZIC	PF18366.1	gi|384432890|ref|YP_005642248.1|	-	0.035	14.2	0.1	0.055	13.6	0.1	1.3	1	0	0	1	1	1	0	Zic	proteins	zinc	finger	domain
V_ATPase_I_N	PF18670.1	gi|384432890|ref|YP_005642248.1|	-	0.079	13.4	0.0	0.1	13.0	0.0	1.2	1	0	0	1	1	1	0	V-type	ATPase	subunit	I,	N-terminal	domain
7kD_DNA_binding	PF02294.18	gi|384432891|ref|YP_005642249.1|	-	6.2e-40	135.0	4.0	6.9e-40	134.9	4.0	1.0	1	0	0	1	1	1	1	7kD	DNA-binding	domain
Pro-kuma_activ	PF09286.11	gi|384432892|ref|YP_005642250.1|	-	3.5e-11	43.6	0.0	6.8e-11	42.6	0.0	1.4	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
MG2	PF01835.19	gi|384432892|ref|YP_005642250.1|	-	8.3e-05	23.0	0.0	0.028	14.9	0.0	2.9	2	0	0	2	2	2	2	MG2	domain
Peptidase_S8	PF00082.22	gi|384432892|ref|YP_005642250.1|	-	0.0017	17.6	0.3	0.0052	16.1	0.3	1.7	1	0	0	1	1	1	1	Subtilase	family
YjgF_endoribonc	PF14588.6	gi|384432892|ref|YP_005642250.1|	-	0.18	12.0	0.2	0.57	10.3	0.2	1.8	1	0	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
PNGaseA	PF12222.8	gi|384432893|ref|YP_005642251.1|	-	2.7e-33	115.5	5.9	1.7e-31	109.6	5.9	2.1	1	1	0	1	1	1	1	Peptide	N-acetyl-beta-D-glucosaminyl	asparaginase	amidase	A
Amidohydro_2	PF04909.14	gi|384432894|ref|YP_005642252.1|	-	3.3e-40	138.7	0.0	4.1e-40	138.4	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase
TatD_DNase	PF01026.21	gi|384432894|ref|YP_005642252.1|	-	0.0023	17.3	0.0	0.0033	16.9	0.0	1.3	1	0	0	1	1	1	1	TatD	related	DNase
YfmQ	PF10787.9	gi|384432894|ref|YP_005642252.1|	-	0.024	14.4	0.2	2.3	8.0	0.0	2.9	3	0	0	3	3	3	0	Uncharacterised	protein	from	bacillus	cereus	group
Ovate	PF04844.13	gi|384432894|ref|YP_005642252.1|	-	0.034	14.1	0.2	0.08	12.9	0.2	1.6	1	0	0	1	1	1	0	Transcriptional	repressor,	ovate
DDE_3	PF13358.6	gi|384432895|ref|YP_005642253.1|	-	1.9e-18	66.6	0.0	3.3e-18	65.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384432895|ref|YP_005642253.1|	-	8.6e-15	54.1	0.2	1.6e-13	50.1	0.1	2.8	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384432895|ref|YP_005642253.1|	-	3e-07	30.0	0.1	1e-06	28.4	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384432895|ref|YP_005642253.1|	-	1.3e-06	28.6	0.7	2.7e-06	27.6	0.2	1.7	2	0	0	2	2	2	1	Transposase
HTH_17	PF12728.7	gi|384432895|ref|YP_005642253.1|	-	1.9e-06	28.0	1.2	0.00031	20.9	0.1	3.4	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|384432895|ref|YP_005642253.1|	-	2.9e-06	27.3	0.0	8.9e-06	25.7	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384432895|ref|YP_005642253.1|	-	4.5e-05	23.5	2.8	0.00016	21.7	2.5	2.1	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384432895|ref|YP_005642253.1|	-	0.00018	21.5	0.1	0.00045	20.2	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384432895|ref|YP_005642253.1|	-	0.00063	20.3	0.0	0.0019	18.7	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384432895|ref|YP_005642253.1|	-	0.0015	18.2	0.0	0.0044	16.7	0.0	1.7	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384432895|ref|YP_005642253.1|	-	0.0017	18.5	0.2	0.0074	16.4	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384432895|ref|YP_005642253.1|	-	0.018	14.8	0.0	0.038	13.8	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384432895|ref|YP_005642253.1|	-	0.029	14.5	0.5	0.15	12.2	0.1	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384432895|ref|YP_005642253.1|	-	0.03	13.3	0.1	0.061	12.3	0.1	1.4	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384432895|ref|YP_005642253.1|	-	0.044	13.8	0.0	0.11	12.5	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384432895|ref|YP_005642253.1|	-	0.056	13.5	0.0	0.18	11.9	0.0	1.9	1	0	0	1	1	1	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384432895|ref|YP_005642253.1|	-	0.079	12.4	0.0	0.21	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
rve	PF00665.26	gi|384432895|ref|YP_005642253.1|	-	0.15	12.2	0.0	0.48	10.6	0.0	1.8	2	0	0	2	2	2	0	Integrase	core	domain
DDE_Tnp_2	PF04693.12	gi|384432896|ref|YP_005642254.1|	-	1.9e-178	592.6	2.1	2.2e-178	592.4	2.1	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384432896|ref|YP_005642254.1|	-	2.4e-05	23.8	0.0	4.6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384432896|ref|YP_005642254.1|	-	0.0011	18.7	0.0	0.0018	17.9	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384432896|ref|YP_005642254.1|	-	0.046	13.4	0.1	0.086	12.6	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
Kinesin_assoc	PF16183.5	gi|384432898|ref|YP_005642256.1|	-	0.04	14.1	0.0	0.045	13.9	0.0	1.2	1	0	0	1	1	1	0	Kinesin-associated
CENP-M	PF11111.8	gi|384432898|ref|YP_005642256.1|	-	0.046	12.9	0.2	0.06	12.5	0.2	1.1	1	0	0	1	1	1	0	Centromere	protein	M	(CENP-M)
MFS_1	PF07690.16	gi|384432899|ref|YP_005642257.1|	-	3.3e-19	69.1	56.2	1.1e-17	64.1	56.3	2.2	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384432899|ref|YP_005642257.1|	-	4.2e-15	55.5	35.7	1.7e-11	43.7	15.5	2.1	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
TNFR_16_TM	PF18422.1	gi|384432899|ref|YP_005642257.1|	-	0.18	11.8	3.2	5.9	6.9	0.6	3.2	2	0	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
MFS_3	PF05977.13	gi|384432899|ref|YP_005642257.1|	-	0.36	9.2	6.7	0.15	10.4	0.8	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Pyr_redox_2	PF07992.14	gi|384432900|ref|YP_005642258.1|	-	7.2e-50	169.9	0.3	1.2e-49	169.2	0.3	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384432900|ref|YP_005642258.1|	-	2.3e-20	72.9	3.3	1.8e-15	57.3	0.2	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|384432900|ref|YP_005642258.1|	-	2.8e-14	53.3	0.1	1.6e-13	50.9	0.1	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
GIDA	PF01134.22	gi|384432900|ref|YP_005642258.1|	-	9.1e-14	51.3	4.5	1.4e-05	24.3	0.1	4.3	4	1	0	4	4	4	4	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|384432900|ref|YP_005642258.1|	-	1.4e-13	50.8	1.3	3.1e-09	36.5	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|384432900|ref|YP_005642258.1|	-	9.2e-10	38.6	0.6	0.00018	21.7	0.1	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|384432900|ref|YP_005642258.1|	-	7.4e-08	32.2	0.5	0.00015	21.3	0.1	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|384432900|ref|YP_005642258.1|	-	8.8e-08	32.1	3.5	0.00023	20.8	0.0	3.8	3	1	0	4	4	4	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|384432900|ref|YP_005642258.1|	-	4e-07	29.6	0.7	0.005	16.1	0.1	2.3	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|384432900|ref|YP_005642258.1|	-	1.8e-06	27.3	3.3	2.1e-05	23.8	0.2	3.0	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|384432900|ref|YP_005642258.1|	-	2.2e-05	24.5	0.1	0.61	10.1	0.0	3.3	3	0	0	3	3	3	1	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|384432900|ref|YP_005642258.1|	-	0.00012	20.9	5.0	0.0023	16.7	0.2	3.7	3	1	1	4	4	4	1	HI0933-like	protein
Thi4	PF01946.17	gi|384432900|ref|YP_005642258.1|	-	0.00046	19.5	3.2	0.0008	18.7	0.3	2.8	2	2	1	4	4	4	1	Thi4	family
Amino_oxidase	PF01593.24	gi|384432900|ref|YP_005642258.1|	-	0.0059	15.9	1.5	14	4.8	0.1	3.4	4	0	0	4	4	4	0	Flavin	containing	amine	oxidoreductase
TrkA_N	PF02254.18	gi|384432900|ref|YP_005642258.1|	-	0.0075	16.5	2.0	1.1	9.5	0.1	3.1	4	0	0	4	4	3	1	TrkA-N	domain
AlaDh_PNT_C	PF01262.21	gi|384432900|ref|YP_005642258.1|	-	0.046	13.0	0.1	0.48	9.7	0.0	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384432900|ref|YP_005642258.1|	-	0.062	12.9	0.6	15	5.1	0.0	3.0	4	0	0	4	4	4	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
PP_kinase_C_1	PF17941.1	gi|384432900|ref|YP_005642258.1|	-	0.065	12.8	0.0	0.24	10.9	0.1	1.9	2	0	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain	1
Nitroreductase	PF00881.24	gi|384432901|ref|YP_005642259.1|	-	1.8e-33	116.0	0.0	2.3e-33	115.6	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|384432901|ref|YP_005642259.1|	-	7.4e-08	32.2	0.9	0.0088	15.6	0.0	3.2	2	1	1	3	3	3	3	Putative	TM	nitroreductase
BCDHK_Adom3	PF10436.9	gi|384432902|ref|YP_005642260.1|	-	0.063	13.1	0.1	0.086	12.7	0.1	1.2	1	0	0	1	1	1	0	Mitochondrial	branched-chain	alpha-ketoacid	dehydrogenase	kinase
DUF3311	PF11755.8	gi|384432902|ref|YP_005642260.1|	-	9.4	6.3	13.0	0.92	9.5	0.3	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3311)
DDE_Tnp_2	PF04693.12	gi|384432903|ref|YP_005642261.1|	-	6.1e-180	597.6	1.5	7e-180	597.4	1.5	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384432903|ref|YP_005642261.1|	-	8.5e-06	25.3	0.0	1.6e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384432903|ref|YP_005642261.1|	-	0.0015	18.2	0.0	0.0024	17.6	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384432903|ref|YP_005642261.1|	-	0.13	12.0	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
DUF772	PF05598.11	gi|384432904|ref|YP_005642262.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384432904|ref|YP_005642262.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
VIT1	PF01988.19	gi|384432906|ref|YP_005642264.1|	-	2.8e-39	135.2	5.0	2.8e-39	135.2	5.0	1.9	3	0	0	3	3	3	1	VIT	family
Rubrerythrin	PF02915.17	gi|384432906|ref|YP_005642264.1|	-	1.1e-08	35.5	6.3	1.9e-08	34.8	6.3	1.3	1	0	0	1	1	1	1	Rubrerythrin
DUF929	PF06053.11	gi|384432908|ref|YP_005642266.1|	-	7.6e-83	277.6	16.4	8.6e-83	277.5	16.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
7TM_GPCR_Srv	PF10323.9	gi|384432908|ref|YP_005642266.1|	-	0.0053	16.1	2.8	0.01	15.2	2.8	1.5	1	0	0	1	1	1	1	Serpentine	type	7TM	GPCR	chemoreceptor	Srv
DUF4519	PF15012.6	gi|384432908|ref|YP_005642266.1|	-	0.18	12.0	0.3	0.34	11.1	0.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4519)
SfsA	PF03749.13	gi|384432909|ref|YP_005642267.1|	-	6.2e-37	126.6	0.0	9e-37	126.0	0.0	1.2	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|384432909|ref|YP_005642267.1|	-	1.5e-16	60.3	0.0	3.4e-16	59.1	0.0	1.6	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
eIF-1a	PF01176.19	gi|384432909|ref|YP_005642267.1|	-	0.011	15.5	0.1	0.037	13.8	0.0	1.9	2	0	0	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
DAGK_acc	PF00609.19	gi|384432910|ref|YP_005642268.1|	-	0.078	13.3	0.1	0.14	12.5	0.1	1.3	1	0	0	1	1	1	0	Diacylglycerol	kinase	accessory	domain
HTH_34	PF13601.6	gi|384432911|ref|YP_005642269.1|	-	4.8e-05	23.4	0.9	7.2e-05	22.9	0.9	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384432911|ref|YP_005642269.1|	-	0.0022	17.8	1.3	0.0054	16.6	0.4	1.9	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|384432911|ref|YP_005642269.1|	-	0.0032	17.4	0.2	0.0049	16.8	0.2	1.2	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
RuvB_C	PF05491.13	gi|384432911|ref|YP_005642269.1|	-	0.005	16.7	2.0	0.057	13.3	0.1	2.2	1	1	1	2	2	2	1	RuvB	C-terminal	winged	helix	domain
DUF1495	PF07381.11	gi|384432911|ref|YP_005642269.1|	-	0.046	13.5	0.2	0.29	11.0	0.1	2.2	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
GGA_N-GAT	PF18308.1	gi|384432911|ref|YP_005642269.1|	-	0.066	12.8	0.8	0.24	11.0	0.8	1.9	1	0	0	1	1	1	0	GGA	N-GAT	domain
HTH_20	PF12840.7	gi|384432911|ref|YP_005642269.1|	-	0.077	13.1	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|384432911|ref|YP_005642269.1|	-	0.1	13.1	0.1	0.19	12.3	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|384432911|ref|YP_005642269.1|	-	0.14	12.1	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Fer4	PF00037.27	gi|384432912|ref|YP_005642270.1|	-	4.2e-14	51.7	13.9	4.3e-07	29.5	6.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384432912|ref|YP_005642270.1|	-	4.2e-09	36.4	6.0	5.7e-09	36.0	6.0	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384432912|ref|YP_005642270.1|	-	2.7e-08	34.3	8.2	8.5e-08	32.7	8.7	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384432912|ref|YP_005642270.1|	-	3.4e-08	33.5	7.0	6.2e-08	32.6	7.1	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384432912|ref|YP_005642270.1|	-	1.5e-07	31.5	6.3	2.2e-07	30.9	6.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384432912|ref|YP_005642270.1|	-	2.4e-07	30.5	13.7	0.00025	21.0	5.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|384432912|ref|YP_005642270.1|	-	9.3e-06	26.1	9.8	0.01	16.4	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_16	PF13484.6	gi|384432912|ref|YP_005642270.1|	-	4.5e-05	24.3	8.9	0.0085	17.0	3.1	2.2	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|384432912|ref|YP_005642270.1|	-	5.9e-05	23.4	7.2	0.00027	21.3	7.5	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384432912|ref|YP_005642270.1|	-	7.3e-05	23.0	8.1	0.045	14.3	3.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384432912|ref|YP_005642270.1|	-	9.8e-05	22.2	10.9	0.03	14.4	4.3	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384432912|ref|YP_005642270.1|	-	0.00012	22.6	1.0	0.33	11.5	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384432912|ref|YP_005642270.1|	-	0.00017	22.2	13.8	0.012	16.5	6.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|384432912|ref|YP_005642270.1|	-	0.001	19.2	0.6	0.0011	19.1	0.6	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_18	PF13746.6	gi|384432912|ref|YP_005642270.1|	-	0.0074	16.5	10.1	0.015	15.5	2.9	2.1	1	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|384432912|ref|YP_005642270.1|	-	0.035	14.8	10.7	0.75	10.6	0.1	2.7	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|384432912|ref|YP_005642270.1|	-	2.6	9.0	8.0	11	7.0	2.5	2.1	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Peptidase_M61	PF05299.12	gi|384432913|ref|YP_005642271.1|	-	5.4e-32	110.7	0.1	8.4e-32	110.0	0.1	1.3	1	0	0	1	1	1	1	M61	glycyl	aminopeptidase
Peptidase_M61_N	PF17899.1	gi|384432913|ref|YP_005642271.1|	-	4.1e-10	40.0	0.1	7.7e-09	35.8	0.1	2.3	1	1	0	1	1	1	1	Peptidase	M61	N-terminal	domain
PDZ_6	PF17820.1	gi|384432913|ref|YP_005642271.1|	-	2.6e-08	33.6	0.2	6.6e-08	32.3	0.0	1.8	2	0	0	2	2	2	1	PDZ	domain
PDZ	PF00595.24	gi|384432913|ref|YP_005642271.1|	-	0.00012	22.3	0.1	0.00025	21.3	0.1	1.4	1	0	0	1	1	1	1	PDZ	domain
PDZ_2	PF13180.6	gi|384432913|ref|YP_005642271.1|	-	0.00018	21.8	0.0	0.00048	20.4	0.0	1.7	1	0	0	1	1	1	1	PDZ	domain
AAA_lid_1	PF17857.1	gi|384432913|ref|YP_005642271.1|	-	0.065	13.5	1.0	0.24	11.7	0.5	2.0	1	1	1	2	2	2	0	AAA+	lid	domain
DUF2138	PF09909.9	gi|384432914|ref|YP_005642272.1|	-	0.081	11.2	0.0	0.09	11.1	0.0	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2138)
MazE_antitoxin	PF04014.18	gi|384432915|ref|YP_005642273.1|	-	4.4e-09	36.1	0.5	6.6e-09	35.5	0.3	1.4	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Skp1	PF01466.19	gi|384432915|ref|YP_005642273.1|	-	0.7	10.1	4.0	1.3	9.2	0.4	2.5	2	1	0	2	2	2	0	Skp1	family,	dimerisation	domain
PIN	PF01850.21	gi|384432916|ref|YP_005642274.1|	-	3.7e-18	66.2	1.2	4.4e-18	66.0	1.2	1.0	1	0	0	1	1	1	1	PIN	domain
RNase_Zc3h12a	PF11977.8	gi|384432916|ref|YP_005642274.1|	-	0.023	14.5	0.0	0.035	13.9	0.0	1.3	1	0	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
DUF4411	PF14367.6	gi|384432916|ref|YP_005642274.1|	-	0.1	12.5	0.4	0.47	10.3	0.0	2.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4411)
HTH_24	PF13412.6	gi|384432917|ref|YP_005642275.1|	-	3e-21	74.7	0.1	1.4e-11	43.8	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|384432917|ref|YP_005642275.1|	-	5.8e-17	61.2	0.0	3.4e-11	42.8	0.0	2.4	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.20	gi|384432917|ref|YP_005642275.1|	-	1.1e-07	31.5	0.1	0.00018	21.3	0.1	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|384432917|ref|YP_005642275.1|	-	4.1e-07	29.8	0.1	0.0035	17.2	0.0	3.1	3	0	0	3	3	3	2	MarR	family
HTH_11	PF08279.12	gi|384432917|ref|YP_005642275.1|	-	1.2e-06	28.4	0.8	2.7e-05	24.0	0.2	2.6	3	0	0	3	3	3	1	HTH	domain
HTH_10	PF04967.12	gi|384432917|ref|YP_005642275.1|	-	1.4e-05	24.8	0.1	0.024	14.4	0.0	2.7	3	0	0	3	3	2	2	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|384432917|ref|YP_005642275.1|	-	3.8e-05	23.5	0.0	0.071	13.0	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_23	PF13384.6	gi|384432917|ref|YP_005642275.1|	-	5.7e-05	22.8	0.0	0.18	11.6	0.0	2.3	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_8	PF02954.19	gi|384432917|ref|YP_005642275.1|	-	5.8e-05	22.8	0.1	0.052	13.3	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	Fis	family
HTH_DeoR	PF08220.12	gi|384432917|ref|YP_005642275.1|	-	6.4e-05	22.6	0.0	0.00019	21.1	0.0	1.8	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|384432917|ref|YP_005642275.1|	-	0.00044	20.2	0.0	0.14	12.2	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|384432917|ref|YP_005642275.1|	-	0.00048	19.8	0.3	0.23	11.1	0.0	2.6	3	0	0	3	3	2	1	Sigma-70,	region	4
HTH_28	PF13518.6	gi|384432917|ref|YP_005642275.1|	-	0.0017	18.4	0.0	1.1	9.4	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|384432917|ref|YP_005642275.1|	-	0.0035	16.9	0.0	0.12	11.9	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|384432917|ref|YP_005642275.1|	-	0.004	16.7	0.1	0.28	10.7	0.1	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_50	PF18024.1	gi|384432917|ref|YP_005642275.1|	-	0.0044	16.6	0.0	3.2	7.4	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384432917|ref|YP_005642275.1|	-	0.0056	16.8	0.0	2.4	8.4	0.0	2.5	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Mga	PF08280.11	gi|384432917|ref|YP_005642275.1|	-	0.0089	16.0	0.0	0.039	14.0	0.1	2.0	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Crp_2	PF13545.6	gi|384432917|ref|YP_005642275.1|	-	0.0089	16.0	0.0	3.2	7.8	0.0	2.3	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|384432917|ref|YP_005642275.1|	-	0.011	15.6	0.7	0.056	13.3	0.1	2.3	3	0	0	3	3	3	0	TFIIE	alpha	subunit
GntR	PF00392.21	gi|384432917|ref|YP_005642275.1|	-	0.02	14.6	0.0	0.049	13.3	0.0	1.6	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	gntR	family
SET_assoc	PF11767.8	gi|384432917|ref|YP_005642275.1|	-	0.021	14.4	0.4	0.082	12.6	0.1	2.1	2	0	0	2	2	2	0	Histone	lysine	methyltransferase	SET	associated
HTH_1	PF00126.27	gi|384432917|ref|YP_005642275.1|	-	0.024	14.6	0.0	3.9	7.5	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
YdaS_antitoxin	PF15943.5	gi|384432917|ref|YP_005642275.1|	-	0.025	14.5	0.0	3.5	7.6	0.0	2.4	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_17	PF12728.7	gi|384432917|ref|YP_005642275.1|	-	0.038	14.2	0.0	0.13	12.5	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
NUMOD1	PF07453.13	gi|384432917|ref|YP_005642275.1|	-	0.039	14.2	0.0	0.34	11.2	0.0	2.7	3	0	0	3	3	1	0	NUMOD1	domain
MerR	PF00376.23	gi|384432917|ref|YP_005642275.1|	-	0.061	13.1	0.1	0.22	11.3	0.0	1.9	2	0	0	2	2	1	0	MerR	family	regulatory	protein
TrmB	PF01978.19	gi|384432917|ref|YP_005642275.1|	-	0.068	13.1	0.1	2.6	8.0	0.1	3.0	3	1	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_38	PF13936.6	gi|384432917|ref|YP_005642275.1|	-	0.075	12.8	0.6	1.5	8.6	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_12	PF08461.10	gi|384432917|ref|YP_005642275.1|	-	0.085	12.8	0.2	0.62	10.0	0.1	2.4	3	0	0	3	3	2	0	Ribonuclease	R	winged-helix	domain
RepL	PF05732.11	gi|384432917|ref|YP_005642275.1|	-	0.091	12.2	0.0	13	5.2	0.0	2.3	2	0	0	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_3	PF01381.22	gi|384432917|ref|YP_005642275.1|	-	0.12	12.4	0.0	18	5.5	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix
HTH_29	PF13551.6	gi|384432917|ref|YP_005642275.1|	-	0.16	12.1	0.0	2.4	8.3	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
Epimerase	PF01370.21	gi|384432919|ref|YP_005642277.1|	-	2.6e-21	76.2	0.0	3.8e-21	75.6	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|384432919|ref|YP_005642277.1|	-	8.9e-18	64.8	0.0	3e-17	63.0	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|384432919|ref|YP_005642277.1|	-	7.6e-06	25.2	0.0	1.3e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384432919|ref|YP_005642277.1|	-	0.00035	20.2	0.0	0.00075	19.1	0.0	1.6	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|384432919|ref|YP_005642277.1|	-	0.0053	15.9	0.0	0.0088	15.2	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
KR	PF08659.10	gi|384432919|ref|YP_005642277.1|	-	0.012	15.5	0.0	0.02	14.8	0.0	1.3	1	0	0	1	1	1	0	KR	domain
Glyco_transf_28	PF03033.20	gi|384432919|ref|YP_005642277.1|	-	0.017	15.1	0.0	0.052	13.6	0.0	1.8	2	0	0	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
adh_short	PF00106.25	gi|384432919|ref|YP_005642277.1|	-	0.18	11.2	0.2	0.73	9.3	0.2	2.1	1	1	0	1	1	1	0	short	chain	dehydrogenase
Ldh_1_N	PF00056.23	gi|384432920|ref|YP_005642278.1|	-	2.2e-29	102.3	0.0	4.3e-29	101.4	0.0	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|384432920|ref|YP_005642278.1|	-	1.3e-09	38.2	0.0	2.1e-09	37.5	0.0	1.3	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
F420_oxidored	PF03807.17	gi|384432920|ref|YP_005642278.1|	-	0.0021	18.6	0.0	0.0056	17.2	0.0	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
DDR	PF08841.10	gi|384432920|ref|YP_005642278.1|	-	0.05	12.6	0.1	0.073	12.0	0.1	1.2	1	0	0	1	1	1	0	Diol	dehydratase	reactivase	ATPase-like	domain
MmgE_PrpD	PF03972.14	gi|384432921|ref|YP_005642279.1|	-	8.7e-104	347.5	0.0	1.1e-103	347.2	0.0	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
DUF2262	PF10020.9	gi|384432921|ref|YP_005642279.1|	-	0.06	13.7	1.9	0.11	12.8	1.9	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2262)
PEP_mutase	PF13714.6	gi|384432922|ref|YP_005642280.1|	-	2.9e-55	187.3	0.3	3.4e-55	187.1	0.3	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.21	gi|384432922|ref|YP_005642280.1|	-	1e-10	40.7	0.3	1.4e-10	40.3	0.3	1.2	1	0	0	1	1	1	1	Isocitrate	lyase	family
DUF881	PF05949.12	gi|384432922|ref|YP_005642280.1|	-	0.018	14.9	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF881)
ThiG	PF05690.14	gi|384432922|ref|YP_005642280.1|	-	0.096	12.0	0.4	0.28	10.4	0.4	1.9	1	1	0	1	1	1	0	Thiazole	biosynthesis	protein	ThiG
CBS	PF00571.28	gi|384432923|ref|YP_005642281.1|	-	5.3e-25	87.6	3.3	1.6e-13	50.9	0.6	2.2	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|384432923|ref|YP_005642281.1|	-	0.023	14.9	1.9	0.34	11.2	0.2	2.7	2	1	1	3	3	3	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Acetyltransf_10	PF13673.7	gi|384432923|ref|YP_005642281.1|	-	0.074	13.0	0.0	0.21	11.5	0.0	1.7	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Citrate_synt	PF00285.21	gi|384432924|ref|YP_005642282.1|	-	5.8e-119	397.4	0.0	6.6e-119	397.2	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
Polysacc_synt_C	PF14667.6	gi|384432925|ref|YP_005642283.1|	-	1.4	9.0	29.5	1.4	8.9	9.3	2.1	1	1	1	2	2	2	0	Polysaccharide	biosynthesis	C-terminal	domain
TctB	PF07331.11	gi|384432925|ref|YP_005642283.1|	-	1.4	9.2	24.2	1.8	8.9	24.2	1.2	1	0	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
Yip1	PF04893.17	gi|384432925|ref|YP_005642283.1|	-	1.9	8.2	33.4	2.8	7.6	32.7	1.6	1	1	0	1	1	1	0	Yip1	domain
DUF429	PF04250.13	gi|384432926|ref|YP_005642284.1|	-	1.5e-09	38.0	1.4	4.8e-05	23.2	0.0	2.4	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF429)
TIM	PF00121.18	gi|384432927|ref|YP_005642285.1|	-	4.1e-15	55.8	0.0	1.2e-14	54.3	0.0	1.7	2	0	0	2	2	2	1	Triosephosphate	isomerase
NMO	PF03060.15	gi|384432927|ref|YP_005642285.1|	-	4.4e-05	23.0	0.0	7e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|384432927|ref|YP_005642285.1|	-	4.4e-05	22.7	0.2	0.00016	20.9	0.2	1.7	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
ThiG	PF05690.14	gi|384432927|ref|YP_005642285.1|	-	8.2e-05	22.0	0.1	0.00013	21.4	0.1	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
His_biosynth	PF00977.21	gi|384432927|ref|YP_005642285.1|	-	0.00052	19.6	0.6	0.0019	17.7	0.2	2.0	3	0	0	3	3	3	1	Histidine	biosynthesis	protein
DUF561	PF04481.12	gi|384432927|ref|YP_005642285.1|	-	0.00078	18.7	1.4	0.013	14.7	0.1	2.6	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF561)
IGPS	PF00218.21	gi|384432927|ref|YP_005642285.1|	-	0.0031	16.7	0.0	0.0046	16.2	0.0	1.2	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
G3P_antiterm	PF04309.12	gi|384432927|ref|YP_005642285.1|	-	0.0033	16.9	1.3	0.013	14.9	0.2	2.2	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
Glu_synthase	PF01645.17	gi|384432927|ref|YP_005642285.1|	-	0.0042	16.3	0.1	0.0062	15.7	0.1	1.2	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.21	gi|384432927|ref|YP_005642285.1|	-	0.0043	16.3	0.2	0.0068	15.6	0.0	1.6	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
IMPDH	PF00478.25	gi|384432927|ref|YP_005642285.1|	-	0.016	14.2	0.4	0.025	13.6	0.4	1.2	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
DUF1729	PF08354.10	gi|384432927|ref|YP_005642285.1|	-	0.056	12.3	0.0	0.092	11.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1729)
Trp_syntA	PF00290.20	gi|384432927|ref|YP_005642285.1|	-	0.11	11.3	1.3	0.14	11.0	0.4	1.6	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
EVE	PF01878.18	gi|384432930|ref|YP_005642288.1|	-	7.9e-23	81.1	0.7	9.6e-23	80.8	0.7	1.1	1	0	0	1	1	1	1	EVE	domain
DUF2197	PF09963.9	gi|384432930|ref|YP_005642288.1|	-	0.12	12.7	0.1	0.25	11.6	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
DUF2194	PF09960.9	gi|384432931|ref|YP_005642289.1|	-	0.002	16.6	0.7	0.002	16.6	0.7	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	conserved	in	bacteria	(DUF2194)
DUF5071	PF16804.5	gi|384432931|ref|YP_005642289.1|	-	0.062	13.6	0.3	0.082	13.2	0.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5071)
HGD-D	PF06050.13	gi|384432931|ref|YP_005642289.1|	-	0.11	12.2	0.4	0.13	12.0	0.4	1.0	1	0	0	1	1	1	0	2-hydroxyglutaryl-CoA	dehydratase,	D-component
Aminotran_5	PF00266.19	gi|384432932|ref|YP_005642290.1|	-	2.9e-37	128.5	0.0	3.8e-37	128.1	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
PRP4	PF08799.11	gi|384432932|ref|YP_005642290.1|	-	0.041	13.5	0.1	0.084	12.5	0.1	1.5	1	0	0	1	1	1	0	pre-mRNA	processing	factor	4	(PRP4)	like
DsrH	PF04077.12	gi|384432932|ref|YP_005642290.1|	-	0.055	13.6	0.0	0.15	12.2	0.0	1.8	1	0	0	1	1	1	0	DsrH	like	protein
TENA_THI-4	PF03070.16	gi|384432933|ref|YP_005642291.1|	-	1.2e-41	142.9	4.2	1.3e-41	142.7	4.2	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
PCMT	PF01135.19	gi|384432934|ref|YP_005642292.1|	-	2.1e-42	145.3	0.0	2.8e-42	144.9	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.20	gi|384432934|ref|YP_005642292.1|	-	3.2e-09	36.3	0.0	4e-09	35.9	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|384432934|ref|YP_005642292.1|	-	2.4e-05	24.9	0.0	4.2e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384432934|ref|YP_005642292.1|	-	0.0047	16.7	0.0	0.0068	16.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384432934|ref|YP_005642292.1|	-	0.006	16.1	0.0	0.0096	15.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_4	PF02390.17	gi|384432934|ref|YP_005642292.1|	-	0.0096	15.4	0.1	0.022	14.2	0.0	1.7	2	0	0	2	2	2	1	Putative	methyltransferase
Met_10	PF02475.16	gi|384432934|ref|YP_005642292.1|	-	0.038	13.7	0.0	0.068	12.9	0.0	1.4	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_3	PF01596.17	gi|384432934|ref|YP_005642292.1|	-	0.043	13.0	0.1	0.08	12.1	0.1	1.5	1	0	0	1	1	1	0	O-methyltransferase
DOT1	PF08123.13	gi|384432934|ref|YP_005642292.1|	-	0.062	12.8	0.0	0.094	12.2	0.0	1.2	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
CMAS	PF02353.20	gi|384432934|ref|YP_005642292.1|	-	0.1	11.9	0.0	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
ABC_tran	PF00005.27	gi|384432935|ref|YP_005642293.1|	-	5.6e-23	82.0	0.0	8.6e-23	81.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384432935|ref|YP_005642293.1|	-	3.5e-13	50.0	0.7	3e-06	27.3	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_27	PF13514.6	gi|384432935|ref|YP_005642293.1|	-	1.6e-05	24.6	0.0	2.5e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|384432935|ref|YP_005642293.1|	-	4.4e-05	23.0	0.7	0.013	14.9	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384432935|ref|YP_005642293.1|	-	6.8e-05	23.5	0.0	0.00011	22.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|384432935|ref|YP_005642293.1|	-	0.0029	17.3	0.0	0.0056	16.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|384432935|ref|YP_005642293.1|	-	0.0072	16.1	0.6	0.026	14.2	0.2	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|384432935|ref|YP_005642293.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
STAS	PF01740.21	gi|384432935|ref|YP_005642293.1|	-	0.016	14.8	0.0	0.022	14.4	0.0	1.4	1	0	0	1	1	1	0	STAS	domain
AAA	PF00004.29	gi|384432935|ref|YP_005642293.1|	-	0.027	14.9	0.0	0.087	13.2	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|384432935|ref|YP_005642293.1|	-	0.054	13.2	0.0	0.077	12.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|384432935|ref|YP_005642293.1|	-	0.098	13.0	0.0	1.1	9.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|384432935|ref|YP_005642293.1|	-	0.15	11.8	0.0	1.7	8.4	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|384432935|ref|YP_005642293.1|	-	0.17	11.8	0.0	4.3	7.2	0.0	2.5	3	0	0	3	3	3	0	NACHT	domain
12TM_1	PF09847.9	gi|384432936|ref|YP_005642294.1|	-	5.7e-111	371.8	77.9	6.6e-111	371.6	77.9	1.0	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
DNA_pol3_beta_3	PF02768.15	gi|384432937|ref|YP_005642295.1|	-	0.14	12.0	1.8	0.43	10.4	0.1	2.6	3	0	0	3	3	3	0	DNA	polymerase	III	beta	subunit,	C-terminal	domain
ERGIC_N	PF13850.6	gi|384432938|ref|YP_005642296.1|	-	0.39	11.1	0.1	0.39	11.1	0.1	1.8	2	0	0	2	2	2	0	Endoplasmic	Reticulum-Golgi	Intermediate	Compartment	(ERGIC)
Tetraspanin	PF00335.20	gi|384432938|ref|YP_005642296.1|	-	3	7.5	6.3	3.8	7.2	6.3	1.1	1	0	0	1	1	1	0	Tetraspanin	family
ArsA_HSP20	PF17886.1	gi|384432939|ref|YP_005642297.1|	-	6.4e-12	44.9	0.1	9.2e-12	44.3	0.1	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|384432939|ref|YP_005642297.1|	-	1.3e-09	38.1	0.1	1.5e-09	37.9	0.1	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
DUF4403	PF14356.6	gi|384432939|ref|YP_005642297.1|	-	0.0011	17.7	0.1	0.0072	15.0	0.1	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4403)
GvpH	PF05455.11	gi|384432939|ref|YP_005642297.1|	-	0.1	12.7	0.0	0.22	11.6	0.0	1.5	1	1	0	1	1	1	0	GvpH
ABC1	PF03109.16	gi|384432940|ref|YP_005642298.1|	-	1.2e-21	77.1	0.1	4.8e-21	75.1	0.0	2.0	2	0	0	2	2	2	1	ABC1	family
RIO1	PF01163.22	gi|384432940|ref|YP_005642298.1|	-	3.6e-06	26.7	0.2	8.6e-06	25.5	0.2	1.6	1	0	0	1	1	1	1	RIO1	family
Pkinase	PF00069.25	gi|384432940|ref|YP_005642298.1|	-	2e-05	24.1	1.8	7.1e-05	22.3	0.9	2.2	2	1	0	2	2	2	1	Protein	kinase	domain
APH	PF01636.23	gi|384432940|ref|YP_005642298.1|	-	0.039	13.9	0.0	0.083	12.8	0.0	1.7	1	1	0	1	1	1	0	Phosphotransferase	enzyme	family
Pkinase_Tyr	PF07714.17	gi|384432940|ref|YP_005642298.1|	-	0.058	12.7	0.0	0.16	11.2	0.0	1.7	1	1	0	1	1	1	0	Protein	tyrosine	kinase
Cas_DxTHG	PF09455.10	gi|384432941|ref|YP_005642299.1|	-	3.4e-05	23.6	8.5	5.3e-05	23.0	8.5	1.4	1	0	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
CENP-S	PF15630.6	gi|384432942|ref|YP_005642300.1|	-	0.017	15.5	0.0	0.046	14.1	0.0	1.7	2	0	0	2	2	2	0	CENP-S	protein
Glycos_transf_1	PF00534.20	gi|384432945|ref|YP_005642303.1|	-	9e-25	87.2	0.0	1.5e-24	86.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384432945|ref|YP_005642303.1|	-	8.2e-09	36.0	0.0	1.3e-08	35.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|384432945|ref|YP_005642303.1|	-	4.3e-06	27.0	0.0	6.9e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF4382	PF14321.6	gi|384432947|ref|YP_005642305.1|	-	6e-12	46.0	0.0	6.9e-12	45.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4382)
BACON	PF13004.7	gi|384432947|ref|YP_005642305.1|	-	0.29	11.1	2.0	0.69	10.0	1.7	1.8	1	1	0	1	1	1	0	Putative	binding	domain,	N-terminal
Trypsin_2	PF13365.6	gi|384432948|ref|YP_005642306.1|	-	8.4e-21	75.4	0.0	1.3e-20	74.8	0.0	1.2	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
PDZ_2	PF13180.6	gi|384432948|ref|YP_005642306.1|	-	1.2e-11	44.7	0.1	2.7e-11	43.6	0.1	1.6	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|384432948|ref|YP_005642306.1|	-	4.5e-11	42.4	0.0	9.3e-11	41.4	0.0	1.6	1	0	0	1	1	1	1	PDZ	domain
PDZ	PF00595.24	gi|384432948|ref|YP_005642306.1|	-	3.4e-08	33.7	0.2	1.1e-07	32.1	0.1	1.9	2	0	0	2	2	2	1	PDZ	domain
Trypsin	PF00089.26	gi|384432948|ref|YP_005642306.1|	-	3.5e-08	33.5	0.0	7.5e-07	29.2	0.0	2.1	1	1	0	1	1	1	1	Trypsin
Tricorn_PDZ	PF14685.6	gi|384432948|ref|YP_005642306.1|	-	0.0033	17.3	0.1	0.013	15.5	0.1	2.0	1	1	1	2	2	2	1	Tricorn	protease	PDZ	domain
Peptidase_S46	PF10459.9	gi|384432948|ref|YP_005642306.1|	-	0.05	12.2	0.1	0.069	11.8	0.1	1.2	1	0	0	1	1	1	0	Peptidase	S46
Peptidase_S32	PF05579.13	gi|384432948|ref|YP_005642306.1|	-	0.1	11.8	0.0	1.9	7.6	0.0	2.1	1	1	0	1	1	1	0	Equine	arteritis	virus	serine	endopeptidase	S32
AhpC-TSA	PF00578.21	gi|384432949|ref|YP_005642307.1|	-	4.9e-38	129.8	0.2	5.7e-38	129.6	0.2	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|384432949|ref|YP_005642307.1|	-	7.7e-28	97.1	0.2	8.9e-28	96.8	0.2	1.0	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|384432949|ref|YP_005642307.1|	-	0.0033	17.7	0.1	0.0053	17.0	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like
SCO1-SenC	PF02630.14	gi|384432949|ref|YP_005642307.1|	-	0.0041	17.0	0.1	0.0054	16.7	0.1	1.3	1	0	0	1	1	1	1	SCO1/SenC
AhpC-TSA_2	PF13911.6	gi|384432949|ref|YP_005642307.1|	-	0.069	13.3	0.0	0.82	9.8	0.0	2.0	1	1	1	2	2	2	0	AhpC/TSA	antioxidant	enzyme
bPH_2	PF03703.14	gi|384432950|ref|YP_005642308.1|	-	0.0042	17.3	0.0	0.02	15.1	0.0	2.1	2	1	0	2	2	2	1	Bacterial	PH	domain
ABC_tran	PF00005.27	gi|384432951|ref|YP_005642309.1|	-	6.2e-36	123.9	0.0	8.7e-36	123.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384432951|ref|YP_005642309.1|	-	2.6e-20	72.7	0.1	6.8e-20	71.4	0.1	1.7	2	0	0	2	2	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|384432951|ref|YP_005642309.1|	-	1.5e-08	34.8	0.9	1.2e-05	25.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|384432951|ref|YP_005642309.1|	-	2e-05	24.9	1.3	6.9e-05	23.1	1.3	1.7	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|384432951|ref|YP_005642309.1|	-	6.4e-05	22.5	1.9	0.00041	19.9	1.9	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
ATPase	PF06745.13	gi|384432951|ref|YP_005642309.1|	-	7.9e-05	22.1	0.2	0.00092	18.6	0.0	2.0	2	0	0	2	2	2	1	KaiC
AAA_16	PF13191.6	gi|384432951|ref|YP_005642309.1|	-	0.00058	20.3	0.0	0.0011	19.4	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|384432951|ref|YP_005642309.1|	-	0.0015	19.0	0.7	0.11	12.9	0.7	2.8	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_13	PF13166.6	gi|384432951|ref|YP_005642309.1|	-	0.0047	15.6	0.5	1.2	7.7	0.0	2.2	2	1	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|384432951|ref|YP_005642309.1|	-	0.025	15.1	0.4	0.053	14.1	0.4	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|384432951|ref|YP_005642309.1|	-	0.034	13.9	0.1	0.066	13.0	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
dNK	PF01712.19	gi|384432951|ref|YP_005642309.1|	-	0.041	13.7	0.0	0.076	12.9	0.0	1.4	1	0	0	1	1	1	0	Deoxynucleoside	kinase
AAA_25	PF13481.6	gi|384432951|ref|YP_005642309.1|	-	0.071	12.7	1.2	0.75	9.3	1.2	2.1	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|384432951|ref|YP_005642309.1|	-	0.074	13.3	0.2	0.45	10.8	0.2	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
G-alpha	PF00503.20	gi|384432951|ref|YP_005642309.1|	-	0.081	12.1	0.0	0.097	11.8	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
ATP-synt_ab	PF00006.25	gi|384432951|ref|YP_005642309.1|	-	0.16	11.6	0.1	0.27	10.9	0.1	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|384432951|ref|YP_005642309.1|	-	0.18	11.8	0.3	7.8	6.5	0.1	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|384432951|ref|YP_005642309.1|	-	0.19	11.5	1.1	0.51	10.0	1.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|384432951|ref|YP_005642309.1|	-	0.19	11.9	1.0	0.6	10.3	1.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|384432951|ref|YP_005642309.1|	-	0.35	10.6	1.8	0.69	9.6	0.5	1.8	1	1	1	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|384432952|ref|YP_005642310.1|	-	7.7e-28	97.7	0.0	1.1e-27	97.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384432952|ref|YP_005642310.1|	-	5.1e-18	65.4	0.0	9e-18	64.6	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|384432952|ref|YP_005642310.1|	-	8.8e-07	29.0	1.9	0.00075	19.4	0.3	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384432952|ref|YP_005642310.1|	-	3.7e-06	26.5	0.0	6.9e-06	25.6	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|384432952|ref|YP_005642310.1|	-	2.1e-05	24.2	0.0	3.7e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|384432952|ref|YP_005642310.1|	-	0.00051	20.3	0.2	0.0076	16.5	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|384432952|ref|YP_005642310.1|	-	0.0053	16.2	1.6	0.12	11.8	0.2	2.7	2	1	1	3	3	3	1	Bacterial	TniB	protein
AAA_16	PF13191.6	gi|384432952|ref|YP_005642310.1|	-	0.0065	16.9	0.0	0.011	16.1	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|384432952|ref|YP_005642310.1|	-	0.012	16.2	0.0	0.077	13.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|384432952|ref|YP_005642310.1|	-	0.02	14.6	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_23	PF13476.6	gi|384432952|ref|YP_005642310.1|	-	0.036	14.6	0.0	0.054	14.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|384432952|ref|YP_005642310.1|	-	0.13	11.6	0.0	0.44	9.9	0.0	1.8	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.6	gi|384432952|ref|YP_005642310.1|	-	0.14	12.3	0.0	0.28	11.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|384432952|ref|YP_005642310.1|	-	0.15	11.8	0.3	6.2	6.5	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NB-ARC	PF00931.22	gi|384432952|ref|YP_005642310.1|	-	0.17	11.0	0.3	0.4	9.8	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
GCD14	PF08704.10	gi|384432952|ref|YP_005642310.1|	-	0.23	11.1	0.3	0.43	10.2	0.0	1.5	2	0	0	2	2	2	0	tRNA	methyltransferase	complex	GCD14	subunit
BPD_transp_1	PF00528.22	gi|384432953|ref|YP_005642311.1|	-	2.7e-25	89.2	16.9	2.7e-25	89.2	16.9	1.8	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384432954|ref|YP_005642312.1|	-	6.4e-48	162.9	16.0	6.4e-48	162.9	16.0	2.2	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
E1-E2_ATPase	PF00122.20	gi|384432954|ref|YP_005642312.1|	-	1.7	8.1	13.8	0.044	13.3	1.2	2.9	3	0	0	3	3	3	0	E1-E2	ATPase
MerC	PF03203.14	gi|384432954|ref|YP_005642312.1|	-	4.9	7.6	10.9	0.28	11.6	2.7	2.7	3	0	0	3	3	3	0	MerC	mercury	resistance	protein
SBP_bac_5	PF00496.22	gi|384432955|ref|YP_005642313.1|	-	4e-64	216.9	5.6	5.2e-63	213.3	5.6	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|384432955|ref|YP_005642313.1|	-	0.00086	19.3	3.0	0.0021	18.1	3.0	1.6	1	0	0	1	1	1	1	Rifin
TMEM154	PF15102.6	gi|384432955|ref|YP_005642313.1|	-	0.004	17.1	9.8	0.0086	16.0	9.8	1.5	1	0	0	1	1	1	1	TMEM154	protein	family
DUF5383	PF17355.2	gi|384432955|ref|YP_005642313.1|	-	0.063	13.6	1.5	0.16	12.4	1.5	1.6	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5383)
FDC-SP	PF15215.6	gi|384432955|ref|YP_005642313.1|	-	0.25	11.9	4.3	0.66	10.6	4.3	1.7	1	0	0	1	1	1	0	Follicular	dendritic	cell	secreted	peptide
DUF5305	PF17231.2	gi|384432955|ref|YP_005642313.1|	-	0.3	10.5	9.2	0.53	9.6	9.2	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
DUF4064	PF13273.6	gi|384432955|ref|YP_005642313.1|	-	1.9	8.8	10.0	2.3	8.5	6.6	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
MazE_antitoxin	PF04014.18	gi|384432956|ref|YP_005642314.1|	-	1.5e-08	34.3	0.3	3.8e-08	33.1	0.3	1.7	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PhoU	PF01895.19	gi|384432956|ref|YP_005642314.1|	-	4.4e-07	30.3	9.5	0.0029	18.0	1.0	3.4	2	1	1	3	3	3	2	PhoU	domain
DNA_pol3_delta	PF06144.13	gi|384432956|ref|YP_005642314.1|	-	0.036	13.9	3.4	0.055	13.3	1.0	2.1	2	0	0	2	2	2	0	DNA	polymerase	III,	delta	subunit
AurF	PF11583.8	gi|384432957|ref|YP_005642315.1|	-	3e-06	26.8	0.1	9.1e-05	21.9	0.0	2.5	2	1	0	2	2	2	1	P-aminobenzoate	N-oxygenase	AurF
Rubrerythrin	PF02915.17	gi|384432957|ref|YP_005642315.1|	-	0.0053	17.2	0.2	0.1	13.0	0.1	2.7	3	0	0	3	3	3	1	Rubrerythrin
Ribonuc_red_sm	PF00268.21	gi|384432957|ref|YP_005642315.1|	-	0.24	10.8	4.7	0.54	9.7	4.7	1.5	1	1	0	1	1	1	0	Ribonucleotide	reductase,	small	chain
4HBT	PF03061.22	gi|384432958|ref|YP_005642316.1|	-	7.6e-12	45.4	0.0	1.1e-11	44.9	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|384432958|ref|YP_005642316.1|	-	0.0009	19.4	0.0	0.0012	18.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|384432958|ref|YP_005642316.1|	-	0.0065	16.8	0.0	0.0078	16.5	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
Acyl-ACP_TE	PF01643.17	gi|384432958|ref|YP_005642316.1|	-	0.05	12.9	0.0	0.059	12.7	0.0	1.1	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
ECH_1	PF00378.20	gi|384432959|ref|YP_005642317.1|	-	1.1e-42	146.1	0.0	1.2e-42	146.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|384432959|ref|YP_005642317.1|	-	3.5e-25	89.2	0.0	1e-23	84.4	0.0	2.0	1	1	0	2	2	2	2	Enoyl-CoA	hydratase/isomerase
ECH_1	PF00378.20	gi|384432960|ref|YP_005642318.1|	-	4.9e-83	278.3	0.1	5.6e-83	278.1	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|384432960|ref|YP_005642318.1|	-	1.8e-41	142.8	0.3	1.9e-38	132.8	0.1	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
Peptidase_S49	PF01343.18	gi|384432960|ref|YP_005642318.1|	-	0.0034	17.3	0.0	0.018	15.0	0.0	2.1	2	0	0	2	2	2	1	Peptidase	family	S49
TcpF	PF06340.11	gi|384432960|ref|YP_005642318.1|	-	0.2	10.5	0.1	1.8	7.3	0.1	1.9	2	0	0	2	2	2	0	Vibrio	cholerae	toxin	co-regulated	pilus	biosynthesis	protein	F
VapB_antitoxin	PF09957.9	gi|384432960|ref|YP_005642318.1|	-	0.67	9.9	4.1	3.5	7.6	0.2	3.5	3	1	0	3	3	3	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
Thiolase_N	PF00108.23	gi|384432961|ref|YP_005642319.1|	-	1e-19	70.9	0.1	2.7e-17	63.0	0.0	2.2	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384432961|ref|YP_005642319.1|	-	5.6e-10	38.9	0.2	4.6e-09	36.0	0.1	2.5	3	0	0	3	3	3	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|384432961|ref|YP_005642319.1|	-	2.5e-05	24.0	3.5	0.0003	20.4	2.5	2.5	1	1	1	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|384432961|ref|YP_005642319.1|	-	0.0052	16.8	0.3	0.97	9.5	0.0	3.5	4	0	0	4	4	4	1	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|384432962|ref|YP_005642320.1|	-	4.6e-13	49.0	0.0	6.8e-13	48.4	0.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|384432962|ref|YP_005642320.1|	-	3.6e-12	45.9	0.0	4.9e-12	45.5	0.0	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TFIIS_C	PF01096.18	gi|384432962|ref|YP_005642320.1|	-	0.061	13.2	1.4	6.7	6.7	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
HypA	PF01155.19	gi|384432962|ref|YP_005642320.1|	-	0.067	13.2	0.3	0.09	12.8	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
CpXC	PF14353.6	gi|384432962|ref|YP_005642320.1|	-	0.13	12.3	0.3	0.22	11.6	0.3	1.4	1	1	0	1	1	1	0	CpXC	protein
YhfH	PF14149.6	gi|384432962|ref|YP_005642320.1|	-	0.17	11.9	3.6	0.69	9.9	0.3	2.2	2	0	0	2	2	2	0	YhfH-like	protein
DUF2688	PF10892.8	gi|384432962|ref|YP_005642320.1|	-	0.22	11.0	0.5	0.22	11.0	0.5	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2688)
zf-ribbon_3	PF13248.6	gi|384432962|ref|YP_005642320.1|	-	0.57	9.7	5.0	1.8	8.1	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CCHC	PF00098.23	gi|384432962|ref|YP_005642320.1|	-	1.2	9.3	9.4	2.2	8.5	2.1	2.2	2	0	0	2	2	2	0	Zinc	knuckle
AMP-binding_C_2	PF14535.6	gi|384432963|ref|YP_005642321.1|	-	5e-18	65.2	2.6	5.6e-17	61.8	1.4	2.4	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|384432963|ref|YP_005642321.1|	-	1.9e-15	56.4	0.1	3.1e-15	55.7	0.1	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
DrsE	PF02635.15	gi|384432964|ref|YP_005642322.1|	-	0.01	16.2	0.0	0.012	16.0	0.0	1.2	1	0	0	1	1	1	0	DsrE/DsrF-like	family
Glyco_transf_4	PF13439.6	gi|384432964|ref|YP_005642322.1|	-	0.048	13.7	0.0	0.051	13.6	0.0	1.1	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
TusA	PF01206.17	gi|384432966|ref|YP_005642324.1|	-	3.3e-13	49.2	0.0	3.7e-13	49.1	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Pyr_redox_2	PF07992.14	gi|384432967|ref|YP_005642325.1|	-	5.4e-13	48.8	0.0	6.6e-12	45.3	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384432967|ref|YP_005642325.1|	-	0.1	13.2	0.2	2.7	8.6	0.0	2.7	2	1	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
DrsE	PF02635.15	gi|384432968|ref|YP_005642326.1|	-	1e-11	45.2	0.0	1.4e-11	44.8	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.6	gi|384432968|ref|YP_005642326.1|	-	6.6e-07	29.4	0.5	6.8e-06	26.0	0.1	1.9	1	1	1	2	2	2	1	DsrE/DsrF/DrsH-like	family
DUF1641	PF07849.11	gi|384432969|ref|YP_005642327.1|	-	5.6e-15	54.9	0.1	1.9e-14	53.2	0.1	2.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
DUF3886	PF13025.6	gi|384432969|ref|YP_005642327.1|	-	0.0055	16.9	3.3	8.5	6.6	0.0	4.8	5	0	0	5	5	5	1	Protein	of	unknown	function	(DUF3886)
DUF4854	PF16146.5	gi|384432969|ref|YP_005642327.1|	-	0.0079	16.5	6.8	0.56	10.6	0.2	3.7	2	1	2	4	4	4	2	Domain	of	unknown	function	(DUF4854)
Rod-binding	PF10135.9	gi|384432969|ref|YP_005642327.1|	-	0.03	14.9	2.5	22	5.7	0.1	4.0	4	0	0	4	4	4	0	Rod	binding	protein
Ribosomal_L22	PF00237.19	gi|384432969|ref|YP_005642327.1|	-	0.051	13.8	2.0	11	6.3	0.1	4.0	2	2	1	3	3	3	0	Ribosomal	protein	L22p/L17e
GalP_UDP_transf	PF01087.22	gi|384432969|ref|YP_005642327.1|	-	0.084	13.3	0.0	2.2	8.6	0.0	2.6	1	1	2	3	3	3	0	Galactose-1-phosphate	uridyl	transferase,	N-terminal	domain
aGPT-Pplase1	PF18723.1	gi|384432969|ref|YP_005642327.1|	-	0.12	11.8	0.4	0.55	9.6	0.1	1.9	2	0	0	2	2	2	0	alpha-glutamyl/putrescinyl	thymine	pyrophosphorylase	clade	1
DnaB	PF00772.21	gi|384432969|ref|YP_005642327.1|	-	0.13	12.4	7.9	12	6.0	0.1	4.5	4	1	1	5	5	5	0	DnaB-like	helicase	N	terminal	domain
Peptidase_M4	PF01447.18	gi|384432969|ref|YP_005642327.1|	-	0.17	12.4	0.1	3.6	8.1	0.0	2.7	1	1	3	4	4	4	0	Thermolysin	metallopeptidase,	catalytic	domain
5_3_exonuc	PF01367.20	gi|384432970|ref|YP_005642328.1|	-	0.2	12.3	1.1	0.48	11.1	0.4	1.8	2	0	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HTH_24	PF13412.6	gi|384432971|ref|YP_005642329.1|	-	0.0001	21.8	0.3	0.00014	21.3	0.3	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RNA_pol_Rpc34	PF05158.12	gi|384432971|ref|YP_005642329.1|	-	0.00034	20.1	0.1	0.00039	19.9	0.1	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpc34	subunit
TFIIE_alpha	PF02002.17	gi|384432971|ref|YP_005642329.1|	-	0.00044	20.1	0.2	0.00049	19.9	0.2	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR_2	PF12802.7	gi|384432971|ref|YP_005642329.1|	-	0.0014	18.5	0.1	0.0017	18.2	0.1	1.1	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|384432971|ref|YP_005642329.1|	-	0.0018	18.1	0.3	0.0021	17.9	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_12	PF08461.10	gi|384432971|ref|YP_005642329.1|	-	0.0034	17.3	0.4	0.0051	16.7	0.4	1.4	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
MarR	PF01047.22	gi|384432971|ref|YP_005642329.1|	-	0.0073	16.2	0.2	0.0092	15.9	0.2	1.1	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|384432971|ref|YP_005642329.1|	-	0.011	15.7	0.0	0.014	15.4	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|384432971|ref|YP_005642329.1|	-	0.022	14.6	0.0	0.029	14.3	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.6	gi|384432971|ref|YP_005642329.1|	-	0.034	14.7	0.1	0.037	14.5	0.1	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384432971|ref|YP_005642329.1|	-	0.04	13.8	0.2	0.057	13.3	0.2	1.3	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|384432971|ref|YP_005642329.1|	-	0.042	14.2	0.1	0.058	13.7	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_micro	PF17007.5	gi|384432971|ref|YP_005642329.1|	-	0.044	12.6	0.3	0.046	12.6	0.3	1.1	1	0	0	1	1	1	0	HTH-like
HTH_36	PF13730.6	gi|384432971|ref|YP_005642329.1|	-	0.057	13.4	0.1	0.24	11.4	0.1	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|384432971|ref|YP_005642329.1|	-	0.057	13.1	0.2	0.091	12.4	0.1	1.5	1	1	1	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Rhodanese	PF00581.20	gi|384432972|ref|YP_005642330.1|	-	9e-11	42.3	0.0	1.2e-10	41.8	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
AIRS_C	PF02769.22	gi|384432973|ref|YP_005642331.1|	-	1.7e-05	25.0	0.0	3.3e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
FAD_binding_5	PF00941.21	gi|384432974|ref|YP_005642332.1|	-	1.2e-48	165.1	0.0	1.7e-48	164.6	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|384432974|ref|YP_005642332.1|	-	1.5e-26	92.5	0.1	6.7e-26	90.5	0.0	2.0	2	0	0	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
DUF4108	PF13390.6	gi|384432974|ref|YP_005642332.1|	-	0.0069	16.3	0.0	0.012	15.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4108)
Fer2_2	PF01799.20	gi|384432975|ref|YP_005642333.1|	-	3.5e-31	107.1	0.0	3.5e-31	107.1	0.0	1.8	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|384432975|ref|YP_005642333.1|	-	0.00043	20.2	0.2	0.00043	20.2	0.2	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|384432975|ref|YP_005642333.1|	-	0.00071	19.6	1.2	0.00071	19.6	1.2	1.4	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Peptidase_M60_C	PF18630.1	gi|384432975|ref|YP_005642333.1|	-	0.1	12.8	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	Peptidase	M60	C-terminal	domain
Ald_Xan_dh_C2	PF02738.18	gi|384432976|ref|YP_005642334.1|	-	1.3e-159	532.3	0.1	1.5e-159	532.0	0.1	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384432976|ref|YP_005642334.1|	-	1.8e-24	86.2	0.0	5.4e-24	84.7	0.0	1.9	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Lipoprot_C	PF08794.10	gi|384432976|ref|YP_005642334.1|	-	0.072	13.1	0.2	0.18	11.8	0.1	1.7	2	0	0	2	2	2	0	Lipoprotein	GNA1870	C	terminal	like
DUF2173	PF09941.9	gi|384432977|ref|YP_005642335.1|	-	1.3e-08	35.1	0.0	2e-08	34.5	0.0	1.3	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
DUF2173	PF09941.9	gi|384432978|ref|YP_005642336.1|	-	0.00011	22.5	0.0	0.00016	21.9	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
DUF2207	PF09972.9	gi|384432978|ref|YP_005642336.1|	-	0.022	13.6	1.3	0.025	13.4	1.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
OppC_N	PF12911.7	gi|384432978|ref|YP_005642336.1|	-	0.27	11.2	0.2	0.27	11.2	0.2	2.0	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Rubrerythrin	PF02915.17	gi|384432979|ref|YP_005642337.1|	-	8e-27	94.3	0.5	1.3e-26	93.6	0.5	1.3	1	1	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.24	gi|384432979|ref|YP_005642337.1|	-	6.5e-12	45.6	0.1	0.00012	22.0	0.2	2.0	1	1	1	2	2	2	2	Ferritin-like	domain
COQ7	PF03232.13	gi|384432979|ref|YP_005642337.1|	-	0.052	13.3	0.3	2.9	7.6	0.1	2.0	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Ferritin_2	PF13668.6	gi|384432979|ref|YP_005642337.1|	-	0.09	13.0	0.1	0.22	11.7	0.1	1.6	1	1	0	1	1	1	0	Ferritin-like	domain
DUF892	PF05974.12	gi|384432979|ref|YP_005642337.1|	-	0.11	12.5	0.5	0.86	9.6	0.1	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF892)
FA_desaturase_2	PF03405.14	gi|384432979|ref|YP_005642337.1|	-	0.14	11.0	0.0	3.9	6.2	0.0	1.9	1	1	0	2	2	2	0	Fatty	acid	desaturase
CCG	PF02754.16	gi|384432980|ref|YP_005642338.1|	-	9.2e-19	67.5	0.0	3.9e-11	43.0	0.0	2.8	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_7	PF12838.7	gi|384432980|ref|YP_005642338.1|	-	0.00013	22.5	6.5	0.0003	21.3	6.5	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384432980|ref|YP_005642338.1|	-	0.0011	19.0	4.9	0.0036	17.4	5.1	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384432980|ref|YP_005642338.1|	-	0.0066	17.0	10.1	0.053	14.1	10.2	2.3	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384432980|ref|YP_005642338.1|	-	0.01	16.3	12.0	0.09	13.2	12.1	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384432980|ref|YP_005642338.1|	-	0.016	15.7	1.8	0.016	15.7	1.8	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|384432980|ref|YP_005642338.1|	-	0.022	14.9	8.1	0.11	12.6	8.4	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384432980|ref|YP_005642338.1|	-	0.038	13.8	11.9	0.65	9.9	3.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|384432980|ref|YP_005642338.1|	-	0.2	11.8	12.5	0.43	10.8	2.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|384432980|ref|YP_005642338.1|	-	0.43	11.5	5.5	5.1	8.1	0.5	2.6	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|384432980|ref|YP_005642338.1|	-	0.82	9.9	12.1	6.2	7.0	1.7	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384432980|ref|YP_005642338.1|	-	3.8	7.8	11.2	0.26	11.4	1.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF3501	PF12007.8	gi|384432981|ref|YP_005642339.1|	-	1.9e-58	197.5	0.6	2.2e-58	197.4	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3501)
PTS_2-RNA	PF01885.16	gi|384432981|ref|YP_005642339.1|	-	0.039	14.0	0.0	0.06	13.4	0.0	1.3	1	0	0	1	1	1	0	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
Peptidase_U32_C	PF16325.5	gi|384432981|ref|YP_005642339.1|	-	0.091	13.0	0.3	0.31	11.4	0.2	1.8	2	0	0	2	2	2	0	Peptidase	family	U32	C-terminal	domain
DUF4898	PF16239.5	gi|384432982|ref|YP_005642340.1|	-	2.8e-29	100.9	3.6	2.8e-29	100.9	3.6	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4898)
ABC2_membrane	PF01061.24	gi|384432983|ref|YP_005642341.1|	-	4e-16	59.1	26.7	1.2e-15	57.5	26.7	1.7	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|384432983|ref|YP_005642341.1|	-	6.4e-10	38.7	27.7	8.1e-10	38.3	27.7	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Romo1	PF10247.9	gi|384432983|ref|YP_005642341.1|	-	0.035	14.5	3.5	0.053	13.9	0.2	2.4	2	0	0	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
LapA_dom	PF06305.11	gi|384432983|ref|YP_005642341.1|	-	0.23	11.3	3.0	2.5	8.0	1.7	2.8	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
ABC_tran	PF00005.27	gi|384432984|ref|YP_005642342.1|	-	1.7e-28	99.8	0.0	2.7e-28	99.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384432984|ref|YP_005642342.1|	-	3.9e-15	56.5	1.3	4.1e-09	36.7	0.0	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|384432984|ref|YP_005642342.1|	-	3.9e-06	26.8	0.9	0.00087	19.1	0.3	3.0	1	1	1	3	3	3	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384432984|ref|YP_005642342.1|	-	2.4e-05	24.0	0.1	4.7e-05	23.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|384432984|ref|YP_005642342.1|	-	0.00015	21.8	0.0	0.00023	21.1	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|384432984|ref|YP_005642342.1|	-	0.00075	20.1	2.9	0.0018	18.8	2.9	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|384432984|ref|YP_005642342.1|	-	0.0036	16.8	0.2	0.09	12.2	0.1	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|384432984|ref|YP_005642342.1|	-	0.0039	17.1	0.1	0.0079	16.1	0.1	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|384432984|ref|YP_005642342.1|	-	0.005	17.2	0.0	0.0087	16.5	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|384432984|ref|YP_005642342.1|	-	0.007	16.1	0.0	0.015	15.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|384432984|ref|YP_005642342.1|	-	0.0075	16.5	0.3	0.085	13.1	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|384432984|ref|YP_005642342.1|	-	0.027	14.2	0.0	0.17	11.6	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA	PF00004.29	gi|384432984|ref|YP_005642342.1|	-	0.05	14.0	0.3	0.17	12.3	0.2	2.1	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ResIII	PF04851.15	gi|384432984|ref|YP_005642342.1|	-	0.051	13.6	0.1	2.4	8.1	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
MukB	PF04310.12	gi|384432984|ref|YP_005642342.1|	-	0.056	13.2	0.2	0.17	11.7	0.0	1.8	2	0	0	2	2	2	0	MukB	N-terminal
AAA_24	PF13479.6	gi|384432984|ref|YP_005642342.1|	-	0.066	12.9	0.5	0.13	11.9	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|384432984|ref|YP_005642342.1|	-	0.076	13.6	0.0	0.19	12.3	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Arm-DNA-bind_3	PF13356.6	gi|384432984|ref|YP_005642342.1|	-	0.078	13.4	0.0	0.34	11.3	0.0	2.0	2	0	0	2	2	2	0	Arm	DNA-binding	domain
SRP54	PF00448.22	gi|384432984|ref|YP_005642342.1|	-	0.14	11.7	0.2	0.33	10.5	0.1	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TsaE	PF02367.17	gi|384432984|ref|YP_005642342.1|	-	0.15	12.1	0.0	0.28	11.2	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NTPase_1	PF03266.15	gi|384432984|ref|YP_005642342.1|	-	0.16	11.9	1.0	3	7.7	0.1	2.6	2	1	1	3	3	3	0	NTPase
Mg_chelatase	PF01078.21	gi|384432984|ref|YP_005642342.1|	-	0.17	11.3	0.1	0.26	10.6	0.1	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
zf-Di19	PF05605.12	gi|384432985|ref|YP_005642343.1|	-	0.0081	16.4	0.0	0.013	15.8	0.0	1.3	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
E1-E2_ATPase	PF00122.20	gi|384432986|ref|YP_005642344.1|	-	2.6e-48	164.0	0.2	8e-48	162.3	0.2	1.9	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|384432986|ref|YP_005642344.1|	-	7.2e-35	121.2	0.2	1.8e-34	119.9	0.2	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|384432986|ref|YP_005642344.1|	-	2.6e-20	72.6	4.8	1.3e-15	57.5	1.3	2.8	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|384432986|ref|YP_005642344.1|	-	3.1e-10	40.2	1.1	1.6e-05	24.8	0.4	2.3	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|384432986|ref|YP_005642344.1|	-	0.0037	17.4	0.2	0.057	13.5	0.2	2.6	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|384432986|ref|YP_005642344.1|	-	0.0038	17.6	0.0	0.016	15.6	0.0	2.1	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
BON	PF04972.17	gi|384432986|ref|YP_005642344.1|	-	0.021	15.1	1.2	6.9	7.1	0.5	3.2	2	0	0	2	2	2	0	BON	domain
Hydrolase_6	PF13344.6	gi|384432986|ref|YP_005642344.1|	-	0.077	13.1	0.0	0.48	10.6	0.0	2.4	2	1	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
YHS	PF04945.13	gi|384432987|ref|YP_005642345.1|	-	3.5e-20	71.8	0.7	4.1e-20	71.6	0.7	1.0	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|384432987|ref|YP_005642345.1|	-	0.00013	22.2	1.7	0.00018	21.8	1.7	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.14	gi|384432987|ref|YP_005642345.1|	-	0.00021	21.2	1.0	0.00029	20.7	0.6	1.4	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
FAP206	PF12018.8	gi|384432987|ref|YP_005642345.1|	-	0.0063	16.1	0.0	0.0071	15.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function
NosL	PF05573.12	gi|384432987|ref|YP_005642345.1|	-	0.081	13.3	0.1	0.095	13.0	0.1	1.1	1	0	0	1	1	1	0	NosL
Arc_trans_TRASH	PF08394.10	gi|384432988|ref|YP_005642346.1|	-	7.3e-19	67.8	9.7	1.4e-18	66.9	9.7	1.5	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_24	PF13412.6	gi|384432988|ref|YP_005642346.1|	-	8.5e-12	44.4	1.7	1.3e-11	43.9	1.7	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|384432988|ref|YP_005642346.1|	-	8.8e-09	35.2	0.2	1.4e-08	34.6	0.2	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|384432988|ref|YP_005642346.1|	-	1.7e-07	31.0	0.3	2.4e-07	30.5	0.3	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|384432988|ref|YP_005642346.1|	-	1.1e-06	28.3	0.3	1.7e-06	27.7	0.3	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|384432988|ref|YP_005642346.1|	-	1.4e-06	28.2	0.6	2.5e-06	27.3	0.6	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|384432988|ref|YP_005642346.1|	-	1.7e-06	27.7	1.1	2.4e-06	27.3	1.1	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.19	gi|384432988|ref|YP_005642346.1|	-	4.1e-06	26.6	0.0	9.6e-06	25.4	0.0	1.6	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
Mga	PF05043.13	gi|384432988|ref|YP_005642346.1|	-	3.7e-05	24.2	0.4	8.8e-05	23.0	0.2	1.7	1	1	1	2	2	1	1	Mga	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384432988|ref|YP_005642346.1|	-	0.0001	22.4	0.0	0.00019	21.6	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|384432988|ref|YP_005642346.1|	-	0.00017	21.5	0.3	0.0003	20.7	0.3	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|384432988|ref|YP_005642346.1|	-	0.00021	21.0	0.1	0.00038	20.2	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_26	PF13443.6	gi|384432988|ref|YP_005642346.1|	-	0.00082	19.8	0.6	0.0017	18.8	0.2	1.7	2	0	0	2	2	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_Mga	PF08280.11	gi|384432988|ref|YP_005642346.1|	-	0.0012	18.8	0.5	0.0039	17.2	0.2	1.9	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_10	PF04967.12	gi|384432988|ref|YP_005642346.1|	-	0.0014	18.3	0.9	0.0028	17.4	0.1	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|384432988|ref|YP_005642346.1|	-	0.0026	18.0	0.1	0.0045	17.3	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_DeoR	PF08220.12	gi|384432988|ref|YP_005642346.1|	-	0.003	17.3	0.5	0.0052	16.5	0.5	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|384432988|ref|YP_005642346.1|	-	0.0035	17.2	0.0	0.0059	16.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_17	PF12728.7	gi|384432988|ref|YP_005642346.1|	-	0.0036	17.4	0.0	0.068	13.4	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
zf-FCS	PF06467.14	gi|384432988|ref|YP_005642346.1|	-	0.0042	17.0	2.8	0.0094	15.9	2.8	1.6	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_3	PF01381.22	gi|384432988|ref|YP_005642346.1|	-	0.0052	16.8	1.5	0.008	16.2	0.7	1.6	2	0	0	2	2	1	1	Helix-turn-helix
HTH_6	PF01418.17	gi|384432988|ref|YP_005642346.1|	-	0.0075	16.2	0.0	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_31	PF13560.6	gi|384432988|ref|YP_005642346.1|	-	0.0086	16.4	0.9	0.015	15.7	0.9	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|384432988|ref|YP_005642346.1|	-	0.012	15.3	0.3	0.022	14.4	0.3	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|384432988|ref|YP_005642346.1|	-	0.014	15.9	0.1	0.031	14.8	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
FtsK_gamma	PF09397.10	gi|384432988|ref|YP_005642346.1|	-	0.015	15.1	0.1	0.025	14.4	0.1	1.3	1	0	0	1	1	1	0	Ftsk	gamma	domain
HTH_28	PF13518.6	gi|384432988|ref|YP_005642346.1|	-	0.018	15.1	0.0	0.035	14.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ribosomal_S25	PF03297.15	gi|384432988|ref|YP_005642346.1|	-	0.023	14.9	0.1	0.045	14.0	0.1	1.4	1	0	0	1	1	1	0	S25	ribosomal	protein
CENP-B_N	PF04218.13	gi|384432988|ref|YP_005642346.1|	-	0.036	13.7	0.3	0.1	12.2	0.1	1.8	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
HTH_36	PF13730.6	gi|384432988|ref|YP_005642346.1|	-	0.039	13.9	0.2	0.089	12.8	0.2	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
FeoC	PF09012.10	gi|384432988|ref|YP_005642346.1|	-	0.042	13.9	0.0	0.042	13.9	0.0	2.3	3	0	0	3	3	2	0	FeoC	like	transcriptional	regulator
NUMOD1	PF07453.13	gi|384432988|ref|YP_005642346.1|	-	0.054	13.8	0.1	0.13	12.6	0.1	1.7	1	0	0	1	1	1	0	NUMOD1	domain
HTH_20	PF12840.7	gi|384432988|ref|YP_005642346.1|	-	0.083	13.0	0.1	0.14	12.2	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_39	PF14090.6	gi|384432988|ref|YP_005642346.1|	-	0.13	12.1	0.1	0.21	11.4	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|384432988|ref|YP_005642346.1|	-	0.17	11.4	1.0	0.48	10.0	1.0	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
PAP2	PF01569.21	gi|384432989|ref|YP_005642347.1|	-	2.2e-24	85.7	3.2	2.2e-24	85.7	3.2	2.2	3	0	0	3	3	3	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|384432989|ref|YP_005642347.1|	-	0.061	13.0	20.1	0.012	15.3	13.5	2.6	2	1	0	2	2	2	0	PAP2	superfamily
Cytochrom_B_N_2	PF13631.6	gi|384432992|ref|YP_005642350.1|	-	2e-57	193.9	2.9	2e-57	193.9	2.9	4.3	4	1	1	5	5	5	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|384432992|ref|YP_005642350.1|	-	4.4e-25	88.6	11.8	4.4e-25	88.6	11.8	2.5	3	1	0	3	3	3	1	Cytochrome	b/b6/petB
Cytochrom_B_C	PF00032.17	gi|384432992|ref|YP_005642350.1|	-	0.00074	19.8	1.7	0.00074	19.8	1.7	3.7	3	1	0	3	3	3	1	Cytochrome	b(C-terminal)/b6/petD
DUF2839	PF10999.8	gi|384432992|ref|YP_005642350.1|	-	0.18	12.2	1.4	32	5.0	0.0	3.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2839)
COX1	PF00115.20	gi|384432993|ref|YP_005642351.1|	-	6.2e-77	259.3	64.4	7.4e-77	259.0	64.4	1.0	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DDE_Tnp_IS1	PF03400.13	gi|384432995|ref|YP_005642353.1|	-	2.8e-05	24.5	0.2	3.8e-05	24.0	0.2	1.3	1	0	0	1	1	1	1	IS1	transposase
Rieske	PF00355.26	gi|384432996|ref|YP_005642354.1|	-	1.7e-09	37.5	0.1	5.4e-09	35.9	0.1	1.7	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.9	gi|384432996|ref|YP_005642354.1|	-	0.12	12.3	0.1	0.24	11.3	0.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1404	PF07185.11	gi|384432999|ref|YP_005642357.1|	-	4.3e-64	215.3	21.2	4.9e-64	215.1	21.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
adh_short_C2	PF13561.6	gi|384433000|ref|YP_005642358.1|	-	5.2e-43	147.3	0.0	7.4e-43	146.8	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384433000|ref|YP_005642358.1|	-	8.8e-42	142.8	0.0	1.2e-41	142.3	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384433000|ref|YP_005642358.1|	-	0.00033	20.6	0.0	0.0019	18.1	0.0	2.2	2	1	0	2	2	2	1	KR	domain
Epimerase	PF01370.21	gi|384433000|ref|YP_005642358.1|	-	0.0087	15.5	0.0	0.02	14.4	0.0	1.7	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_7	PF13241.6	gi|384433000|ref|YP_005642358.1|	-	0.0087	16.5	0.0	0.014	15.8	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.19	gi|384433000|ref|YP_005642358.1|	-	0.073	12.4	0.0	0.14	11.5	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
MR_MLE_C	PF13378.6	gi|384433001|ref|YP_005642359.1|	-	2.3e-56	190.8	0.0	3.1e-56	190.4	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|384433001|ref|YP_005642359.1|	-	3.1e-15	56.4	0.0	6.8e-15	55.3	0.0	1.6	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
TadF	PF16964.5	gi|384433003|ref|YP_005642361.1|	-	0.058	13.2	0.3	0.077	12.7	0.3	1.1	1	0	0	1	1	1	0	Putative	tight	adherence	pilin	protein	F
YtpI	PF14007.6	gi|384433004|ref|YP_005642362.1|	-	0.008	16.3	2.0	0.0086	16.2	2.0	1.0	1	0	0	1	1	1	1	YtpI-like	protein
DDE_Tnp_1	PF01609.21	gi|384433005|ref|YP_005642363.1|	-	2.1e-16	60.2	0.0	2.8e-16	59.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
SBP_bac_5	PF00496.22	gi|384433006|ref|YP_005642364.1|	-	3e-38	131.8	4.9	6.4e-38	130.7	4.9	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|384433006|ref|YP_005642364.1|	-	0.98	9.2	13.7	1.6	8.5	13.7	1.3	1	0	0	1	1	1	0	Rifin
Peptidase_M56	PF05569.11	gi|384433006|ref|YP_005642364.1|	-	1.3	8.2	7.3	2.2	7.4	7.3	1.4	1	0	0	1	1	1	0	BlaR1	peptidase	M56
DUF5305	PF17231.2	gi|384433006|ref|YP_005642364.1|	-	1.5	8.2	16.3	2.4	7.5	16.3	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
BPD_transp_1	PF00528.22	gi|384433007|ref|YP_005642365.1|	-	9.8e-24	84.1	16.2	9.8e-24	84.1	16.2	2.1	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|384433007|ref|YP_005642365.1|	-	4.6e-05	23.3	0.6	4.6e-05	23.3	0.6	3.3	3	0	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
TRAM_LAG1_CLN8	PF03798.16	gi|384433007|ref|YP_005642365.1|	-	0.011	15.4	2.4	0.011	15.4	2.4	1.6	2	0	0	2	2	2	0	TLC	domain
ABC_tran	PF00005.27	gi|384433008|ref|YP_005642366.1|	-	6e-29	101.3	0.0	9.8e-29	100.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384433008|ref|YP_005642366.1|	-	3.4e-13	49.9	0.0	5.8e-13	49.2	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|384433008|ref|YP_005642366.1|	-	3.9e-13	49.9	1.2	3e-06	27.3	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384433008|ref|YP_005642366.1|	-	2.4e-07	30.4	1.9	0.00014	21.4	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|384433008|ref|YP_005642366.1|	-	7e-05	23.3	0.0	9.6e-05	22.8	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384433008|ref|YP_005642366.1|	-	0.00012	21.7	0.1	0.00024	20.8	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|384433008|ref|YP_005642366.1|	-	0.0019	17.1	2.4	0.76	8.5	0.1	2.4	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
TniB	PF05621.11	gi|384433008|ref|YP_005642366.1|	-	0.0031	16.9	1.7	0.11	11.8	0.6	2.3	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_23	PF13476.6	gi|384433008|ref|YP_005642366.1|	-	0.004	17.7	0.2	0.0081	16.7	0.2	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384433008|ref|YP_005642366.1|	-	0.0046	17.4	0.3	0.032	14.6	0.3	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|384433008|ref|YP_005642366.1|	-	0.0046	17.2	0.4	0.034	14.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.14	gi|384433008|ref|YP_005642366.1|	-	0.0054	16.6	0.8	0.0088	15.9	0.1	1.7	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.12	gi|384433008|ref|YP_005642366.1|	-	0.033	14.1	0.1	0.072	13.0	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|384433008|ref|YP_005642366.1|	-	0.036	14.0	0.4	0.098	12.6	0.1	1.8	2	0	0	2	2	2	0	RsgA	GTPase
NB-ARC	PF00931.22	gi|384433008|ref|YP_005642366.1|	-	0.036	13.3	0.1	0.064	12.4	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|384433008|ref|YP_005642366.1|	-	0.039	14.0	0.0	0.088	12.9	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NTPase_1	PF03266.15	gi|384433008|ref|YP_005642366.1|	-	0.041	13.8	0.6	0.11	12.4	0.1	1.8	2	0	0	2	2	2	0	NTPase
PIF1	PF05970.14	gi|384433008|ref|YP_005642366.1|	-	0.047	12.8	0.3	0.17	11.0	0.0	1.9	2	0	0	2	2	2	0	PIF1-like	helicase
PRK	PF00485.18	gi|384433008|ref|YP_005642366.1|	-	0.067	12.9	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
cobW	PF02492.19	gi|384433008|ref|YP_005642366.1|	-	0.079	12.5	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.17	gi|384433008|ref|YP_005642366.1|	-	0.086	12.6	0.2	0.58	9.9	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
TrwB_AAD_bind	PF10412.9	gi|384433008|ref|YP_005642366.1|	-	0.094	11.6	0.1	0.14	11.0	0.1	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_30	PF13604.6	gi|384433008|ref|YP_005642366.1|	-	0.12	12.1	0.2	0.28	10.9	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|384433008|ref|YP_005642366.1|	-	0.12	12.4	0.3	0.27	11.3	0.3	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
ATP-synt_ab	PF00006.25	gi|384433008|ref|YP_005642366.1|	-	0.13	11.9	0.1	0.15	11.7	0.1	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_15	PF13175.6	gi|384433008|ref|YP_005642366.1|	-	0.14	11.9	0.9	2.7	7.6	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
TsaE	PF02367.17	gi|384433008|ref|YP_005642366.1|	-	0.17	11.9	0.0	0.32	11.0	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_19	PF13245.6	gi|384433008|ref|YP_005642366.1|	-	0.17	12.2	1.6	1.2	9.5	0.3	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|384433008|ref|YP_005642366.1|	-	0.2	11.4	0.2	0.44	10.2	0.2	1.6	1	0	0	1	1	1	0	AAA	domain
Megourin	PF17560.2	gi|384433008|ref|YP_005642366.1|	-	0.26	11.6	0.6	11	6.3	0.0	2.3	2	0	0	2	2	2	0	Aphid	Megourins
ABC_tran	PF00005.27	gi|384433009|ref|YP_005642367.1|	-	2.5e-30	105.8	0.0	3.6e-30	105.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384433009|ref|YP_005642367.1|	-	2.6e-14	53.5	0.1	5e-14	52.6	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|384433009|ref|YP_005642367.1|	-	0.0024	18.1	1.0	0.051	13.8	1.0	2.2	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|384433009|ref|YP_005642367.1|	-	0.05	13.5	0.1	0.093	12.6	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_16	PF13191.6	gi|384433009|ref|YP_005642367.1|	-	0.052	13.9	0.1	0.094	13.1	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384433009|ref|YP_005642367.1|	-	0.083	12.7	0.0	0.2	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_13	PF13166.6	gi|384433009|ref|YP_005642367.1|	-	0.19	10.4	0.3	1.9	7.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DDE_Tnp_1	PF01609.21	gi|384433010|ref|YP_005642368.1|	-	2.1e-16	60.2	0.0	2.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF608	PF04685.13	gi|384433011|ref|YP_005642369.1|	-	6.4e-85	285.5	2.0	1.7e-83	280.8	2.0	2.2	1	1	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydr_116N	PF12215.8	gi|384433011|ref|YP_005642369.1|	-	2.9e-06	27.0	4.4	0.00057	19.5	4.4	3.4	1	1	0	1	1	1	1	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
Bac_rhamnosid6H	PF17389.2	gi|384433011|ref|YP_005642369.1|	-	0.00024	20.5	0.5	0.00038	19.8	0.5	1.2	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Peptidase_M1	PF01433.20	gi|384433012|ref|YP_005642370.1|	-	4e-82	275.0	1.8	7.5e-82	274.1	1.8	1.5	1	0	0	1	1	1	1	Peptidase	family	M1	domain
ERAP1_C	PF11838.8	gi|384433012|ref|YP_005642370.1|	-	8.2e-36	124.1	0.1	1.3e-35	123.5	0.1	1.3	1	0	0	1	1	1	1	ERAP1-like	C-terminal	domain
Peptidase_M1_N	PF17900.1	gi|384433012|ref|YP_005642370.1|	-	2.1e-32	112.8	0.0	4.7e-32	111.7	0.0	1.6	1	0	0	1	1	1	1	Peptidase	M1	N-terminal	domain
Aminopep	PF10023.9	gi|384433012|ref|YP_005642370.1|	-	0.036	13.4	0.1	0.074	12.4	0.1	1.4	1	0	0	1	1	1	0	Putative	aminopeptidase
Gp58	PF07902.11	gi|384433013|ref|YP_005642371.1|	-	0.034	12.4	0.1	0.039	12.2	0.1	1.1	1	0	0	1	1	1	0	gp58-like	protein
T2SSF	PF00482.23	gi|384433016|ref|YP_005642374.1|	-	2.6e-20	72.6	2.2	3.4e-10	39.9	0.1	3.9	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2755	PF10954.8	gi|384433016|ref|YP_005642374.1|	-	0.35	10.8	10.7	1.5	8.8	1.3	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2755)
T2SSE	PF00437.20	gi|384433017|ref|YP_005642375.1|	-	2.7e-39	134.9	0.0	3.8e-39	134.4	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_21	PF13304.6	gi|384433017|ref|YP_005642375.1|	-	9.7e-06	25.6	0.1	6.4e-05	22.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384433017|ref|YP_005642375.1|	-	0.00013	21.7	0.0	0.00027	20.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|384433017|ref|YP_005642375.1|	-	0.00038	20.3	1.7	0.003	17.3	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|384433017|ref|YP_005642375.1|	-	0.00055	20.2	0.0	0.0017	18.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|384433017|ref|YP_005642375.1|	-	0.00078	20.0	0.0	0.0036	17.8	0.0	2.1	3	0	0	3	3	3	1	ABC	transporter
AAA_23	PF13476.6	gi|384433017|ref|YP_005642375.1|	-	0.00098	19.7	0.2	0.00098	19.7	0.2	2.0	2	1	0	2	2	2	1	AAA	domain
DUF3987	PF13148.6	gi|384433017|ref|YP_005642375.1|	-	0.011	14.8	0.0	0.017	14.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
AAA_30	PF13604.6	gi|384433017|ref|YP_005642375.1|	-	0.029	14.1	0.0	0.055	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|384433017|ref|YP_005642375.1|	-	0.03	13.7	0.1	0.072	12.4	0.1	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
SMC_N	PF02463.19	gi|384433017|ref|YP_005642375.1|	-	0.031	13.7	0.0	0.062	12.7	0.0	1.5	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
cobW	PF02492.19	gi|384433017|ref|YP_005642375.1|	-	0.058	13.0	0.2	0.14	11.8	0.2	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Mg_chelatase	PF01078.21	gi|384433017|ref|YP_005642375.1|	-	0.12	11.7	0.2	0.42	10.0	0.0	1.8	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_7	PF12775.7	gi|384433017|ref|YP_005642375.1|	-	0.15	11.6	0.0	0.27	10.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_16	PF13191.6	gi|384433017|ref|YP_005642375.1|	-	0.15	12.4	0.0	0.32	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_27	PF13514.6	gi|384433017|ref|YP_005642375.1|	-	0.16	11.5	0.0	0.3	10.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
FGGY_C	PF02782.16	gi|384433018|ref|YP_005642376.1|	-	0.036	13.8	0.1	0.044	13.5	0.1	1.1	1	0	0	1	1	1	0	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
Cu-oxidase	PF00394.22	gi|384433018|ref|YP_005642376.1|	-	0.14	12.2	1.4	0.13	12.4	0.4	1.5	2	0	0	2	2	2	0	Multicopper	oxidase
PspB	PF06667.12	gi|384433019|ref|YP_005642377.1|	-	0.14	12.2	0.2	0.27	11.3	0.2	1.5	1	0	0	1	1	1	0	Phage	shock	protein	B
Baculo_11_kDa	PF06143.11	gi|384433019|ref|YP_005642377.1|	-	0.92	9.1	6.2	0.13	11.9	1.9	1.7	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
DUF3278	PF11683.8	gi|384433019|ref|YP_005642377.1|	-	1.3	9.1	9.7	1.4	9.0	2.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3278)
Pilin_N	PF07790.11	gi|384433020|ref|YP_005642378.1|	-	0.0093	16.9	0.1	0.02	15.8	0.1	1.7	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
zinc_ribbon_2	PF13240.6	gi|384433021|ref|YP_005642379.1|	-	2.2e-08	33.5	5.2	3.6e-08	32.9	5.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|384433021|ref|YP_005642379.1|	-	1.4e-05	25.1	1.2	2e-05	24.5	1.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|384433021|ref|YP_005642379.1|	-	0.00043	19.6	6.2	0.00068	19.0	6.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|384433021|ref|YP_005642379.1|	-	0.00071	18.8	0.6	0.001	18.3	0.6	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
zf-tcix	PF14952.6	gi|384433021|ref|YP_005642379.1|	-	0.0088	15.6	2.7	0.019	14.6	2.7	1.4	1	0	0	1	1	1	1	Putative	treble-clef,	zinc-finger,	Zn-binding
UPF0547	PF10571.9	gi|384433021|ref|YP_005642379.1|	-	0.013	15.6	2.5	0.022	14.8	2.5	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.6	gi|384433021|ref|YP_005642379.1|	-	0.02	14.8	2.2	0.55	10.2	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.11	gi|384433021|ref|YP_005642379.1|	-	0.052	13.2	0.4	5.8	6.7	0.0	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433021|ref|YP_005642379.1|	-	0.32	10.9	0.8	0.68	9.9	0.8	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_15	PF17032.5	gi|384433021|ref|YP_005642379.1|	-	0.37	11.6	3.7	0.65	10.8	3.7	1.4	1	0	0	1	1	1	0	zinc-ribbon	family
zf_C2H2_10	PF18414.1	gi|384433021|ref|YP_005642379.1|	-	1.1	8.8	8.5	0.15	11.6	2.0	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
zn-ribbon_14	PF16503.5	gi|384433021|ref|YP_005642379.1|	-	4.1	7.0	6.6	13	5.4	0.5	2.3	2	0	0	2	2	2	0	Zinc-ribbon
DUF4191	PF13829.6	gi|384433021|ref|YP_005642379.1|	-	5.2	6.3	17.6	0.21	10.9	2.5	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4191)
MJ1316	PF04457.12	gi|384433022|ref|YP_005642380.1|	-	1.3e-13	51.5	1.0	1.4e-13	51.3	1.0	1.0	1	0	0	1	1	1	1	MJ1316	RNA	cyclic	group	end	recognition	domain
FlaG	PF03646.15	gi|384433022|ref|YP_005642380.1|	-	0.011	15.9	0.2	0.013	15.6	0.2	1.2	1	0	0	1	1	1	0	FlaG	protein
XAF1_C	PF18608.1	gi|384433023|ref|YP_005642381.1|	-	0.0094	15.5	0.1	0.015	14.8	0.1	1.4	1	0	0	1	1	1	1	XIAP-associated	factor	1	C-terminal	domain
HTH_5	PF01022.20	gi|384433024|ref|YP_005642382.1|	-	1.7e-15	56.6	1.2	2e-15	56.4	0.2	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384433024|ref|YP_005642382.1|	-	1.1e-08	35.0	0.0	2.1e-08	34.1	0.0	1.5	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|384433024|ref|YP_005642382.1|	-	2.9e-07	29.9	0.1	9.9e-06	25.0	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|384433024|ref|YP_005642382.1|	-	7.2e-07	29.0	0.0	2.8e-06	27.1	0.0	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.6	gi|384433024|ref|YP_005642382.1|	-	4.7e-06	26.7	0.0	8.3e-06	25.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_9	PF08221.11	gi|384433024|ref|YP_005642382.1|	-	9.6e-05	22.4	0.4	0.0081	16.2	0.2	2.2	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Rrf2	PF02082.20	gi|384433024|ref|YP_005642382.1|	-	0.0013	19.0	0.1	0.0052	17.1	0.0	1.8	1	1	1	2	2	2	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|384433024|ref|YP_005642382.1|	-	0.0015	18.4	0.1	0.0032	17.3	0.1	1.5	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_23	PF13384.6	gi|384433024|ref|YP_005642382.1|	-	0.0083	15.9	0.0	0.023	14.5	0.0	1.6	2	0	0	2	2	2	1	Homeodomain-like	domain
MarR_2	PF12802.7	gi|384433024|ref|YP_005642382.1|	-	0.0097	15.8	0.0	0.013	15.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_38	PF13936.6	gi|384433024|ref|YP_005642382.1|	-	0.018	14.8	0.0	0.034	13.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
KorB	PF08535.10	gi|384433024|ref|YP_005642382.1|	-	0.029	14.4	0.0	0.045	13.8	0.0	1.3	1	0	0	1	1	1	0	KorB	domain
HTH_11	PF08279.12	gi|384433024|ref|YP_005642382.1|	-	0.059	13.3	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
DUF2551	PF10826.8	gi|384433024|ref|YP_005642382.1|	-	0.06	13.6	0.1	0.11	12.8	0.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
Soyouz_module	PF14313.6	gi|384433024|ref|YP_005642382.1|	-	0.12	12.2	0.5	2.2	8.1	0.1	2.2	2	0	0	2	2	2	0	N-terminal	region	of	Paramyxovirinae	phosphoprotein	(P)
LexA_DNA_bind	PF01726.16	gi|384433024|ref|YP_005642382.1|	-	0.13	12.0	0.1	0.71	9.7	0.0	2.1	3	0	0	3	3	3	0	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|384433024|ref|YP_005642382.1|	-	0.14	12.0	0.0	0.29	11.0	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Phage_rep_O	PF04492.13	gi|384433024|ref|YP_005642382.1|	-	0.16	12.6	0.1	0.73	10.4	0.0	1.9	1	1	1	2	2	2	0	Bacteriophage	replication	protein	O
zf-FCS	PF06467.14	gi|384433025|ref|YP_005642383.1|	-	9.3e-07	28.7	3.8	9.3e-07	28.7	3.8	1.5	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.13	gi|384433025|ref|YP_005642383.1|	-	0.00019	21.5	1.7	0.00024	21.2	1.7	1.2	1	0	0	1	1	1	1	YHS	domain
ATPase-cat_bd	PF12156.8	gi|384433025|ref|YP_005642383.1|	-	0.00037	21.2	5.7	0.00044	20.9	5.7	1.1	1	0	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
Ta0938	PF11494.8	gi|384433025|ref|YP_005642383.1|	-	0.0012	19.1	0.5	0.0013	18.9	0.5	1.1	1	0	0	1	1	1	1	Ta0938
Arc_trans_TRASH	PF08394.10	gi|384433025|ref|YP_005642383.1|	-	0.012	15.9	5.1	0.021	15.1	5.1	1.5	1	0	0	1	1	1	0	Archaeal	TRASH	domain
MTTB	PF06253.11	gi|384433025|ref|YP_005642383.1|	-	0.13	10.3	0.0	0.14	10.2	0.0	1.0	1	0	0	1	1	1	0	Trimethylamine	methyltransferase	(MTTB)
Pyr_redox_2	PF07992.14	gi|384433026|ref|YP_005642384.1|	-	1.2e-57	195.4	0.1	1.6e-57	195.0	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|384433026|ref|YP_005642384.1|	-	1.1e-28	99.7	0.2	2.2e-28	98.7	0.1	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|384433026|ref|YP_005642384.1|	-	4.6e-17	62.2	5.2	1.4e-15	57.3	0.0	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384433026|ref|YP_005642384.1|	-	7.1e-13	48.9	0.0	2.6e-12	47.1	0.0	2.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|384433026|ref|YP_005642384.1|	-	3.2e-07	29.8	8.9	0.018	14.2	3.0	4.1	3	1	0	3	3	3	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|384433026|ref|YP_005642384.1|	-	3.7e-05	22.6	1.4	0.0077	15.0	0.0	3.0	3	0	0	3	3	3	1	HI0933-like	protein
K_oxygenase	PF13434.6	gi|384433026|ref|YP_005642384.1|	-	0.057	12.6	0.0	0.4	9.8	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.24	gi|384433026|ref|YP_005642384.1|	-	0.077	12.1	4.1	1.2	8.1	0.0	2.4	2	0	0	2	2	2	0	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|384433026|ref|YP_005642384.1|	-	0.32	11.0	1.1	3	7.8	0.0	2.9	4	0	0	4	4	4	0	FAD-NAD(P)-binding
Rad50_zn_hook	PF04423.14	gi|384433027|ref|YP_005642385.1|	-	0.014	15.3	0.9	0.056	13.3	0.0	2.4	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
zf-C2H2_9	PF16293.5	gi|384433027|ref|YP_005642385.1|	-	0.25	11.2	1.5	2.9	7.8	0.2	2.4	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
CBS	PF00571.28	gi|384433028|ref|YP_005642386.1|	-	5.9e-23	81.1	2.5	1.6e-11	44.5	0.4	2.1	2	0	0	2	2	2	2	CBS	domain
Fumble	PF03630.14	gi|384433028|ref|YP_005642386.1|	-	0.019	14.1	0.4	0.023	13.9	0.4	1.1	1	0	0	1	1	1	0	Fumble
Ribosomal_L9_C	PF03948.14	gi|384433028|ref|YP_005642386.1|	-	0.053	14.0	0.4	0.89	10.1	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	protein	L9,	C-terminal	domain
HGTP_anticodon	PF03129.20	gi|384433028|ref|YP_005642386.1|	-	0.1	12.8	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	Anticodon	binding	domain
IF3_N	PF05198.16	gi|384433028|ref|YP_005642386.1|	-	0.12	12.7	0.3	17	5.8	0.0	2.8	2	1	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Peptidase_S9	PF00326.21	gi|384433029|ref|YP_005642387.1|	-	1.3e-48	165.3	0.1	1.7e-48	164.9	0.1	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|384433029|ref|YP_005642387.1|	-	2.2e-07	30.8	1.7	5.5e-05	22.9	1.3	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S15	PF02129.18	gi|384433029|ref|YP_005642387.1|	-	8.1e-07	28.9	0.2	0.00061	19.5	0.2	2.2	1	1	0	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Hydrolase_4	PF12146.8	gi|384433029|ref|YP_005642387.1|	-	3.8e-06	26.3	0.2	0.04	13.2	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DLH	PF01738.18	gi|384433029|ref|YP_005642387.1|	-	4.5e-06	26.4	0.0	2.8e-05	23.8	0.0	2.0	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|384433029|ref|YP_005642387.1|	-	0.00014	21.6	0.0	0.00026	20.7	0.0	1.3	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_2	PF02230.16	gi|384433029|ref|YP_005642387.1|	-	0.0049	16.7	0.1	0.023	14.5	0.0	1.9	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
DUF2920	PF11144.8	gi|384433029|ref|YP_005642387.1|	-	0.0074	15.5	0.2	0.75	8.9	0.0	2.9	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2920)
PhoPQ_related	PF10142.9	gi|384433029|ref|YP_005642387.1|	-	0.069	11.8	0.0	0.11	11.1	0.0	1.2	1	0	0	1	1	1	0	PhoPQ-activated	pathogenicity-related	protein
Peptidase_S28	PF05577.12	gi|384433029|ref|YP_005642387.1|	-	0.13	11.1	0.1	0.24	10.1	0.1	1.4	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
Abhydrolase_6	PF12697.7	gi|384433029|ref|YP_005642387.1|	-	0.23	12.0	0.0	0.35	11.4	0.0	1.3	1	0	0	1	1	1	0	Alpha/beta	hydrolase	family
Peptidase_M48	PF01435.18	gi|384433030|ref|YP_005642388.1|	-	3.7e-22	79.1	0.0	1e-21	77.6	0.0	1.7	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|384433030|ref|YP_005642388.1|	-	0.0076	15.5	4.3	0.0079	15.4	2.5	2.0	1	1	1	2	2	2	1	BlaR1	peptidase	M56
YbhQ	PF11076.8	gi|384433030|ref|YP_005642388.1|	-	0.053	13.5	5.4	2.4	8.2	0.5	2.3	2	0	0	2	2	2	0	Putative	inner	membrane	protein	YbhQ
SprT-like	PF10263.9	gi|384433030|ref|YP_005642388.1|	-	0.095	12.6	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
GYD	PF08734.11	gi|384433031|ref|YP_005642389.1|	-	1.3e-25	89.1	0.1	1.5e-25	88.9	0.1	1.0	1	0	0	1	1	1	1	GYD	domain
AsnC_trans_reg	PF01037.21	gi|384433031|ref|YP_005642389.1|	-	0.00014	21.8	0.1	0.00024	21.0	0.1	1.4	1	1	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
DUF4208	PF13907.6	gi|384433031|ref|YP_005642389.1|	-	0.11	13.0	0.0	0.17	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4208)
Thiolase_N	PF00108.23	gi|384433032|ref|YP_005642390.1|	-	3.7e-24	85.5	0.0	9.8e-24	84.1	0.0	1.7	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384433032|ref|YP_005642390.1|	-	7.9e-05	22.3	0.3	0.00018	21.1	0.1	1.7	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.10	gi|384433032|ref|YP_005642390.1|	-	0.0074	16.1	0.1	0.33	10.8	0.1	2.4	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35_N	PF12172.8	gi|384433033|ref|YP_005642391.1|	-	2e-06	27.6	1.1	3.8e-06	26.6	1.1	1.5	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|384433033|ref|YP_005642391.1|	-	0.0055	16.7	1.5	0.0059	16.6	0.8	1.5	1	1	1	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|384433033|ref|YP_005642391.1|	-	0.023	14.2	1.4	4.1	7.0	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|384433033|ref|YP_005642391.1|	-	0.054	13.2	0.2	0.054	13.2	0.2	2.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|384433033|ref|YP_005642391.1|	-	0.072	13.0	4.7	2.1	8.4	0.6	2.6	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|384433033|ref|YP_005642391.1|	-	0.076	12.9	1.8	0.19	11.6	1.8	1.6	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.10	gi|384433033|ref|YP_005642391.1|	-	0.19	11.9	4.0	0.54	10.4	4.0	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.18	gi|384433033|ref|YP_005642391.1|	-	0.26	11.2	4.1	2.9	7.8	0.9	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C2H2	PF00096.26	gi|384433033|ref|YP_005642391.1|	-	2.7	8.6	6.4	4.3	8.0	1.8	2.6	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Ta0938	PF11494.8	gi|384433034|ref|YP_005642392.1|	-	1.6e-59	198.7	7.1	1.7e-59	198.6	7.1	1.0	1	0	0	1	1	1	1	Ta0938
AGT	PF11440.8	gi|384433034|ref|YP_005642392.1|	-	0.0099	15.0	0.1	0.012	14.7	0.1	1.1	1	0	0	1	1	1	1	DNA	alpha-glucosyltransferase
Tudor_3	PF18115.1	gi|384433034|ref|YP_005642392.1|	-	0.17	11.8	0.1	0.28	11.0	0.1	1.3	1	0	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
TENA_THI-4	PF03070.16	gi|384433035|ref|YP_005642393.1|	-	5.8e-52	176.5	0.1	7.9e-52	176.1	0.1	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
zf-C2H2_9	PF16293.5	gi|384433035|ref|YP_005642393.1|	-	6e-30	102.9	3.7	1.6e-29	101.5	3.7	1.8	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
Haem_oxygenas_2	PF14518.6	gi|384433035|ref|YP_005642393.1|	-	4.5e-16	59.1	0.0	7.5e-16	58.4	0.0	1.4	1	0	0	1	1	1	1	Iron-containing	redox	enzyme
zf-C2H2	PF00096.26	gi|384433035|ref|YP_005642393.1|	-	0.0055	17.1	0.1	0.014	15.8	0.1	1.8	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|384433035|ref|YP_005642393.1|	-	0.048	14.5	0.1	0.14	13.0	0.1	1.8	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-C2H2_2	PF12756.7	gi|384433035|ref|YP_005642393.1|	-	0.066	13.5	0.0	0.6	10.5	0.0	2.3	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(2	copies)
zf-met	PF12874.7	gi|384433035|ref|YP_005642393.1|	-	0.14	12.6	0.1	0.3	11.5	0.1	1.6	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
MFS_1	PF07690.16	gi|384433036|ref|YP_005642394.1|	-	8.6e-20	70.9	38.7	1e-12	47.7	16.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|384433036|ref|YP_005642394.1|	-	0.00054	18.9	0.8	0.00054	18.9	0.8	2.6	2	1	0	2	2	2	1	MFS_1	like	family
Sugar_tr	PF00083.24	gi|384433036|ref|YP_005642394.1|	-	0.0014	17.5	12.0	0.0014	17.5	12.0	3.0	1	1	2	3	3	3	1	Sugar	(and	other)	transporter
Sigma_reg_N	PF13800.6	gi|384433038|ref|YP_005642396.1|	-	0.0016	18.7	0.9	0.0017	18.6	0.9	1.0	1	0	0	1	1	1	1	Sigma	factor	regulator	N-terminal
DUF4834	PF16118.5	gi|384433038|ref|YP_005642396.1|	-	0.043	14.8	0.1	0.05	14.6	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
Sporozoite_P67	PF05642.11	gi|384433038|ref|YP_005642396.1|	-	0.074	11.1	6.3	0.066	11.3	6.3	1.1	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
TarH	PF02203.15	gi|384433038|ref|YP_005642396.1|	-	0.11	12.4	0.2	0.13	12.2	0.2	1.1	1	0	0	1	1	1	0	Tar	ligand	binding	domain	homologue
DUF4805	PF16063.5	gi|384433038|ref|YP_005642396.1|	-	0.21	10.9	8.3	0.26	10.6	8.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4805)
SSP160	PF06933.11	gi|384433038|ref|YP_005642396.1|	-	0.23	9.6	10.4	0.23	9.6	10.4	1.0	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
B277	PF17623.2	gi|384433038|ref|YP_005642396.1|	-	8.3	5.4	8.7	9.7	5.2	8.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function
MFS_1	PF07690.16	gi|384433040|ref|YP_005642398.1|	-	3.4e-41	141.4	58.8	1.6e-26	93.1	23.4	3.2	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384433040|ref|YP_005642398.1|	-	1.5e-07	30.7	36.2	3e-06	26.4	15.3	3.0	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|384433040|ref|YP_005642398.1|	-	0.00019	20.0	6.2	0.00078	18.0	2.0	2.4	2	0	0	2	2	2	2	Transmembrane	secretion	effector
DUF2583	PF10762.9	gi|384433040|ref|YP_005642398.1|	-	0.51	10.8	6.6	0.22	12.0	0.2	3.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
OATP	PF03137.20	gi|384433040|ref|YP_005642398.1|	-	2.6	6.2	20.2	0.21	9.9	1.3	3.5	3	1	0	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF1129	PF06570.11	gi|384433040|ref|YP_005642398.1|	-	2.8	7.4	9.5	0.62	9.5	1.6	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
SGL	PF08450.12	gi|384433041|ref|YP_005642399.1|	-	1.3e-82	277.1	0.2	1.4e-82	276.9	0.2	1.0	1	0	0	1	1	1	1	SMP-30/Gluconolactonase/LRE-like	region
Arylesterase	PF01731.20	gi|384433041|ref|YP_005642399.1|	-	0.055	13.7	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	Arylesterase
Reg_prop	PF07494.11	gi|384433041|ref|YP_005642399.1|	-	0.056	13.7	1.4	9.4	6.9	0.1	3.2	3	0	0	3	3	3	0	Two	component	regulator	propeller
PQQ_2	PF13360.6	gi|384433041|ref|YP_005642399.1|	-	0.062	12.9	0.0	0.28	10.7	0.0	1.8	2	0	0	2	2	2	0	PQQ-like	domain
Str_synth	PF03088.16	gi|384433041|ref|YP_005642399.1|	-	0.07	13.3	0.0	0.15	12.2	0.0	1.5	1	0	0	1	1	1	0	Strictosidine	synthase
PNP_UDP_1	PF01048.20	gi|384433042|ref|YP_005642400.1|	-	9.5e-37	126.5	0.0	1.1e-36	126.3	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
ssDBP	PF17878.1	gi|384433042|ref|YP_005642400.1|	-	0.1	12.8	0.0	0.21	11.9	0.0	1.4	1	0	0	1	1	1	0	Single-stranded	DNA-binding	protein
DoxX	PF07681.12	gi|384433043|ref|YP_005642401.1|	-	4.1e-11	43.3	4.4	4.1e-11	43.3	4.4	1.5	2	0	0	2	2	2	1	DoxX
DoxX_2	PF13564.6	gi|384433043|ref|YP_005642401.1|	-	9.2e-05	22.5	4.0	0.00018	21.5	3.9	1.6	1	1	1	2	2	2	1	DoxX-like	family
TMEM43	PF07787.12	gi|384433043|ref|YP_005642401.1|	-	0.63	9.4	1.2	0.78	9.1	1.2	1.1	1	0	0	1	1	1	0	Transmembrane	protein	43
AIRS_C	PF02769.22	gi|384433044|ref|YP_005642402.1|	-	1.6e-21	77.1	0.1	3.3e-21	76.0	0.0	1.6	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|384433044|ref|YP_005642402.1|	-	3.8e-12	46.7	0.1	6.6e-12	45.9	0.1	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
HEPN_DZIP3	PF18738.1	gi|384433044|ref|YP_005642402.1|	-	0.16	11.7	0.0	0.4	10.4	0.0	1.5	2	0	0	2	2	2	0	DZIP3/	hRUL138-like	HEPN
TPR_11	PF13414.6	gi|384433045|ref|YP_005642403.1|	-	7.6e-31	105.5	29.3	1.4e-08	34.3	0.2	6.5	3	2	3	6	6	6	6	TPR	repeat
TPR_1	PF00515.28	gi|384433045|ref|YP_005642403.1|	-	5.1e-30	102.0	34.9	1.1e-08	34.6	0.8	7.0	6	1	1	7	7	7	5	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|384433045|ref|YP_005642403.1|	-	4.5e-28	95.1	39.8	1.7e-07	30.8	0.4	8.2	8	1	1	9	9	9	5	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|384433045|ref|YP_005642403.1|	-	6.2e-24	84.3	12.8	4e-10	40.1	0.0	4.6	2	1	2	5	5	5	5	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|384433045|ref|YP_005642403.1|	-	3.2e-23	81.7	15.0	4.6e-08	33.2	2.3	3.7	2	1	1	3	3	3	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_8	PF13181.6	gi|384433045|ref|YP_005642403.1|	-	4.6e-23	79.4	37.1	4.1e-08	32.8	0.6	7.5	8	1	0	8	8	8	5	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|384433045|ref|YP_005642403.1|	-	5.8e-20	71.7	0.2	0.00017	22.2	0.0	4.9	2	2	2	5	5	5	4	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|384433045|ref|YP_005642403.1|	-	3.3e-19	69.0	10.2	8.4e-06	26.0	0.3	5.2	2	1	3	5	5	5	5	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|384433045|ref|YP_005642403.1|	-	3.2e-18	64.9	4.0	5.4e-05	23.7	0.0	6.4	5	3	3	8	8	7	4	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|384433045|ref|YP_005642403.1|	-	2.5e-15	55.7	17.9	0.0061	16.9	0.2	7.2	7	1	1	8	8	7	4	Tetratricopeptide	repeat
TPR_15	PF13429.6	gi|384433045|ref|YP_005642403.1|	-	7.6e-14	51.6	4.5	4.7e-10	39.2	2.7	2.8	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|384433045|ref|YP_005642403.1|	-	3.4e-13	48.6	16.1	0.002	18.0	0.0	7.0	7	1	1	8	8	7	3	Tetratricopeptide	repeat
NARP1	PF12569.8	gi|384433045|ref|YP_005642403.1|	-	1.4e-12	47.3	16.1	9e-07	28.2	0.2	3.1	2	1	1	3	3	3	3	NMDA	receptor-regulated	protein	1
TPR_9	PF13371.6	gi|384433045|ref|YP_005642403.1|	-	1.8e-12	47.2	0.0	0.0053	16.9	0.0	4.0	3	1	1	4	4	4	3	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|384433045|ref|YP_005642403.1|	-	2.4e-09	37.2	20.1	0.001	19.6	0.3	6.5	7	0	0	7	7	5	2	Tetratricopeptide	repeat
TPR_20	PF14561.6	gi|384433045|ref|YP_005642403.1|	-	1.1e-08	35.3	2.7	0.0021	18.4	0.0	4.4	2	1	2	4	4	4	1	Tetratricopeptide	repeat
TPR_21	PF09976.9	gi|384433045|ref|YP_005642403.1|	-	1.6e-07	31.2	4.3	1.4e-05	24.9	0.5	3.2	2	1	1	3	3	3	1	Tetratricopeptide	repeat-like	domain
TPR_10	PF13374.6	gi|384433045|ref|YP_005642403.1|	-	4.2e-07	29.6	7.5	0.059	13.3	0.1	6.1	6	0	0	6	6	6	1	Tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|384433045|ref|YP_005642403.1|	-	2.5e-06	27.5	22.5	0.0021	18.1	2.7	3.5	1	1	2	3	3	3	3	Putative	TPR-like	repeat
Fis1_TPR_C	PF14853.6	gi|384433045|ref|YP_005642403.1|	-	2.7e-06	27.4	19.9	0.11	12.6	2.4	5.6	5	1	1	6	6	6	2	Fis1	C-terminal	tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|384433045|ref|YP_005642403.1|	-	6.6e-05	22.4	0.0	0.014	14.8	0.0	2.4	2	0	0	2	2	2	1	MalT-like	TPR	region
Alkyl_sulf_dimr	PF14863.6	gi|384433045|ref|YP_005642403.1|	-	0.00025	21.5	0.3	0.016	15.7	0.0	3.1	2	1	2	4	4	4	1	Alkyl	sulfatase	dimerisation
DUF627	PF04781.12	gi|384433045|ref|YP_005642403.1|	-	0.00042	20.3	3.8	4.3	7.4	0.1	4.6	3	1	2	5	5	5	1	Protein	of	unknown	function	(DUF627)
SHNi-TPR	PF10516.9	gi|384433045|ref|YP_005642403.1|	-	0.00054	19.4	0.7	6.5	6.3	0.0	5.0	5	0	0	5	5	5	0	SHNi-TPR
TPR_3	PF07720.12	gi|384433045|ref|YP_005642403.1|	-	0.0021	18.0	3.4	0.0021	18.0	3.4	5.3	6	0	0	6	6	5	1	Tetratricopeptide	repeat
ANAPC5	PF12862.7	gi|384433045|ref|YP_005642403.1|	-	0.024	14.7	3.3	9.5	6.4	0.0	4.4	3	2	1	4	4	4	0	Anaphase-promoting	complex	subunit	5
DUF5113	PF17140.4	gi|384433045|ref|YP_005642403.1|	-	0.045	13.6	12.1	0.16	11.8	1.5	3.9	3	2	2	5	5	4	0	Domain	of	unknown	function	(DUF5113)
Telomere_res	PF16684.5	gi|384433045|ref|YP_005642403.1|	-	0.063	12.8	0.5	0.063	12.8	0.5	3.0	1	1	2	3	3	3	0	Telomere	resolvase
NOG1_N	PF17835.1	gi|384433045|ref|YP_005642403.1|	-	0.11	12.5	3.8	0.42	10.6	0.1	2.7	3	0	0	3	3	2	0	NOG1	N-terminal	helical	domain
HEAT_2	PF13646.6	gi|384433045|ref|YP_005642403.1|	-	0.12	12.8	0.0	0.62	10.5	0.0	2.3	3	0	0	3	3	1	0	HEAT	repeats
DUF4198	PF10670.9	gi|384433045|ref|YP_005642403.1|	-	0.12	12.8	0.3	0.31	11.4	0.2	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4198)
Type_III_YscG	PF09477.10	gi|384433045|ref|YP_005642403.1|	-	0.22	11.6	0.8	1.6	8.8	0.0	2.7	3	0	0	3	3	3	0	Bacterial	type	II	secretion	system	chaperone	protein	(type_III_yscG)
Arm-DNA-bind_2	PF12167.8	gi|384433045|ref|YP_005642403.1|	-	0.63	10.0	3.7	2.5	8.1	0.1	3.0	2	1	0	2	2	2	0	Arm	DNA-binding	domain
MIT	PF04212.18	gi|384433045|ref|YP_005642403.1|	-	0.8	9.8	23.4	2.5	8.3	0.3	6.6	7	1	1	8	8	6	0	MIT	(microtubule	interacting	and	transport)	domain
RPN7	PF10602.9	gi|384433045|ref|YP_005642403.1|	-	1.1	8.9	19.7	0.5	10.1	5.7	2.8	2	1	1	3	3	2	0	26S	proteasome	subunit	RPN7
PDCD2_C	PF04194.13	gi|384433045|ref|YP_005642403.1|	-	1.1	9.3	4.4	0.71	9.9	2.4	1.7	1	1	1	2	2	2	0	Programmed	cell	death	protein	2,	C-terminal	putative	domain
HTH_Bact	PF18768.1	gi|384433045|ref|YP_005642403.1|	-	1.4	8.6	0.0	1.4	8.6	0.0	5.0	5	1	0	5	5	4	0	Helix-turn-helix	bacterial	domain
CLTH	PF10607.9	gi|384433045|ref|YP_005642403.1|	-	1.6	8.6	9.0	1.9e+02	1.9	9.0	2.6	1	1	0	1	1	1	0	CTLH/CRA	C-terminal	to	LisH	motif	domain
SPOB_a	PF14689.6	gi|384433045|ref|YP_005642403.1|	-	1.7	8.4	0.0	1.7	8.4	0.0	5.5	8	0	0	8	8	7	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
CxxCxxCC	PF03692.15	gi|384433046|ref|YP_005642404.1|	-	7.5e-09	36.2	2.5	1.1e-08	35.6	2.5	1.3	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
SBP_bac_8	PF13416.6	gi|384433047|ref|YP_005642405.1|	-	1.3e-16	61.3	0.0	2.4e-16	60.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|384433047|ref|YP_005642405.1|	-	1.1e-15	58.5	0.1	2.8e-15	57.1	0.0	1.7	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|384433047|ref|YP_005642405.1|	-	4.5e-05	23.3	0.1	0.00031	20.5	0.0	2.3	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Pilin_N	PF07790.11	gi|384433047|ref|YP_005642405.1|	-	0.013	16.4	2.7	0.026	15.4	2.7	1.5	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
SBP_bac_6	PF13343.6	gi|384433047|ref|YP_005642405.1|	-	0.023	14.1	0.4	0.068	12.6	0.0	2.1	3	0	0	3	3	3	0	Bacterial	extracellular	solute-binding	protein
DUF4307	PF14155.6	gi|384433047|ref|YP_005642405.1|	-	0.46	10.3	1.8	0.93	9.4	1.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
ABC_tran	PF00005.27	gi|384433048|ref|YP_005642406.1|	-	1.3e-35	122.9	0.1	2.2e-35	122.2	0.1	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384433048|ref|YP_005642406.1|	-	4.3e-10	39.9	0.7	0.00093	19.1	0.0	2.5	1	1	2	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|384433048|ref|YP_005642406.1|	-	0.00015	20.6	0.3	0.034	12.8	0.0	2.2	2	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.19	gi|384433048|ref|YP_005642406.1|	-	0.00023	20.7	4.5	0.0018	17.8	4.5	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384433048|ref|YP_005642406.1|	-	0.00094	19.7	4.5	0.0018	18.8	0.6	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|384433048|ref|YP_005642406.1|	-	0.0011	18.8	4.3	0.01	15.6	4.3	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
PIF1	PF05970.14	gi|384433048|ref|YP_005642406.1|	-	0.0024	17.1	0.5	0.16	11.1	0.1	2.2	2	0	0	2	2	2	1	PIF1-like	helicase
AAA_29	PF13555.6	gi|384433048|ref|YP_005642406.1|	-	0.0029	17.3	0.2	0.0067	16.1	0.2	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
TOBE_2	PF08402.10	gi|384433048|ref|YP_005642406.1|	-	0.0041	17.3	0.0	0.0099	16.0	0.0	1.7	1	0	0	1	1	1	1	TOBE	domain
RsgA_GTPase	PF03193.16	gi|384433048|ref|YP_005642406.1|	-	0.0087	16.0	2.0	0.0088	16.0	0.2	1.8	2	0	0	2	2	2	1	RsgA	GTPase
AAA_18	PF13238.6	gi|384433048|ref|YP_005642406.1|	-	0.0092	16.5	0.1	0.017	15.7	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|384433048|ref|YP_005642406.1|	-	0.015	15.6	0.3	0.042	14.1	0.2	1.9	1	1	1	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|384433048|ref|YP_005642406.1|	-	0.017	15.0	0.2	0.034	14.1	0.2	1.5	1	0	0	1	1	1	0	NACHT	domain
DnaB_C	PF03796.15	gi|384433048|ref|YP_005642406.1|	-	0.024	14.0	0.9	0.91	8.8	0.0	2.3	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
ATPase	PF06745.13	gi|384433048|ref|YP_005642406.1|	-	0.032	13.6	1.9	0.71	9.2	1.9	2.5	1	1	0	1	1	1	0	KaiC
ATPase_2	PF01637.18	gi|384433048|ref|YP_005642406.1|	-	0.033	14.1	1.4	0.068	13.1	1.4	1.7	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_16	PF13191.6	gi|384433048|ref|YP_005642406.1|	-	0.033	14.6	0.0	0.044	14.2	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
ABC_ATPase	PF09818.9	gi|384433048|ref|YP_005642406.1|	-	0.047	12.5	0.4	13	4.4	0.2	2.8	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
T2SSE	PF00437.20	gi|384433048|ref|YP_005642406.1|	-	0.049	12.7	0.0	0.096	11.7	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.6	gi|384433048|ref|YP_005642406.1|	-	0.085	12.6	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|384433048|ref|YP_005642406.1|	-	0.097	13.1	0.5	0.74	10.2	0.5	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.19	gi|384433048|ref|YP_005642406.1|	-	0.1	12.2	0.1	0.23	11.0	0.1	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NB-ARC	PF00931.22	gi|384433048|ref|YP_005642406.1|	-	0.13	11.4	0.8	0.42	9.8	0.8	1.8	1	1	0	1	1	1	0	NB-ARC	domain
BPD_transp_1	PF00528.22	gi|384433049|ref|YP_005642407.1|	-	6.4e-16	58.6	46.3	8.9e-11	41.9	22.7	4.1	1	1	2	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
MFS_1	PF07690.16	gi|384433050|ref|YP_005642408.1|	-	1.5e-53	182.0	47.4	1.5e-53	182.0	47.4	2.1	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384433050|ref|YP_005642408.1|	-	1e-09	37.8	16.2	1e-09	37.8	16.2	2.8	2	1	0	3	3	3	1	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|384433050|ref|YP_005642408.1|	-	4.6e-05	22.0	19.5	0.00011	20.7	14.3	2.3	2	0	0	2	2	2	2	Transmembrane	secretion	effector
ADH_N	PF08240.12	gi|384433051|ref|YP_005642409.1|	-	6.7e-22	77.4	0.4	2.9e-21	75.4	0.4	2.0	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
Glu_dehyd_C	PF16912.5	gi|384433051|ref|YP_005642409.1|	-	0.0007	19.1	0.5	0.6	9.6	0.1	2.2	2	0	0	2	2	2	2	Glucose	dehydrogenase	C-terminus
FAD_binding_3	PF01494.19	gi|384433051|ref|YP_005642409.1|	-	0.011	15.0	0.0	0.015	14.6	0.0	1.1	1	0	0	1	1	1	0	FAD	binding	domain
HI0933_like	PF03486.14	gi|384433051|ref|YP_005642409.1|	-	0.02	13.6	0.0	0.029	13.1	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|384433051|ref|YP_005642409.1|	-	0.065	12.5	0.5	0.1	11.9	0.5	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|384433051|ref|YP_005642409.1|	-	0.087	12.0	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
MFS_1	PF07690.16	gi|384433052|ref|YP_005642410.1|	-	4.6e-46	157.4	28.9	4.6e-46	157.4	28.9	1.3	2	0	0	2	2	2	1	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|384433052|ref|YP_005642410.1|	-	4.8e-09	36.0	0.5	4.8e-09	36.0	0.5	2.6	2	1	0	3	3	3	1	Uncharacterised	MFS-type	transporter	YbfB
OATP	PF03137.20	gi|384433052|ref|YP_005642410.1|	-	0.00012	20.6	12.2	0.016	13.5	0.6	2.9	1	1	1	2	2	2	2	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Herpes_LMP1	PF05297.11	gi|384433052|ref|YP_005642410.1|	-	0.11	11.7	2.0	0.22	10.7	2.0	1.4	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
Peptidase_M20	PF01546.28	gi|384433053|ref|YP_005642411.1|	-	1.8e-31	109.4	0.0	2.3e-31	109.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|384433053|ref|YP_005642411.1|	-	7.7e-06	25.7	0.0	1.2e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
M20_dimer	PF07687.14	gi|384433053|ref|YP_005642411.1|	-	0.0004	20.3	0.0	0.00086	19.2	0.0	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Aminotran_3	PF00202.21	gi|384433054|ref|YP_005642412.1|	-	4e-91	305.7	0.0	4.9e-91	305.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Metallophos	PF00149.28	gi|384433055|ref|YP_005642413.1|	-	4.5e-08	33.8	0.2	1.7e-07	32.0	0.2	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384433055|ref|YP_005642413.1|	-	8.5e-07	29.3	0.1	0.0072	16.5	0.0	2.3	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.6	gi|384433055|ref|YP_005642413.1|	-	0.00023	20.6	0.4	0.023	14.0	0.1	2.6	2	1	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
DDE_Tnp_2	PF04693.12	gi|384433056|ref|YP_005642414.1|	-	4.8e-177	588.0	3.1	5.5e-177	587.8	3.1	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384433056|ref|YP_005642414.1|	-	4.7e-05	22.9	0.0	9.2e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384433056|ref|YP_005642414.1|	-	0.00077	19.2	0.0	0.0014	18.3	0.0	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384433056|ref|YP_005642414.1|	-	0.047	13.4	0.1	0.088	12.5	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
Aminotran_3	PF00202.21	gi|384433058|ref|YP_005642416.1|	-	8.3e-105	350.8	0.0	9.4e-105	350.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
PIN_6	PF17146.4	gi|384433058|ref|YP_005642416.1|	-	0.15	12.5	0.1	0.86	10.1	0.1	2.1	2	0	0	2	2	2	0	PIN	domain	of	ribonuclease
AA_permease	PF00324.21	gi|384433059|ref|YP_005642417.1|	-	4.6e-106	355.3	50.5	5.5e-106	355.0	50.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|384433059|ref|YP_005642417.1|	-	2.5e-14	53.0	53.8	3.4e-14	52.5	53.8	1.2	1	0	0	1	1	1	1	Amino	acid	permease
SporV_AA	PF12164.8	gi|384433059|ref|YP_005642417.1|	-	0.096	13.1	0.1	0.25	11.7	0.1	1.6	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AA
Metallophos	PF00149.28	gi|384433060|ref|YP_005642418.1|	-	6.9e-09	36.5	2.9	1.8e-08	35.1	2.9	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|384433060|ref|YP_005642418.1|	-	2.6e-07	30.2	1.8	2.1e-06	27.3	0.0	2.2	2	1	0	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos_2	PF12850.7	gi|384433060|ref|YP_005642418.1|	-	5e-07	30.0	0.1	0.00015	22.0	0.1	2.6	2	1	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
ATPase_2	PF01637.18	gi|384433061|ref|YP_005642419.1|	-	1.9e-16	60.7	2.9	1.1e-15	58.2	2.9	2.1	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|384433061|ref|YP_005642419.1|	-	6.4e-10	39.2	0.3	4.7e-05	23.4	0.2	2.6	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|384433061|ref|YP_005642419.1|	-	1.1e-06	29.2	0.0	2.4e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
Bac_DnaA	PF00308.18	gi|384433061|ref|YP_005642419.1|	-	0.0021	17.9	0.4	0.0043	16.9	0.1	1.6	2	0	0	2	2	2	1	Bacterial	dnaA	protein
TrmB	PF01978.19	gi|384433061|ref|YP_005642419.1|	-	0.026	14.4	0.1	0.43	10.5	0.0	2.8	2	1	1	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
AAA_22	PF13401.6	gi|384433061|ref|YP_005642419.1|	-	0.04	14.2	0.3	0.34	11.2	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
HTH_36	PF13730.6	gi|384433061|ref|YP_005642419.1|	-	0.15	12.0	0.2	2.9	7.9	0.1	2.9	2	1	0	2	2	2	0	Helix-turn-helix	domain
Herpes_IR6	PF06307.12	gi|384433061|ref|YP_005642419.1|	-	0.17	11.5	0.0	0.26	10.8	0.0	1.2	1	0	0	1	1	1	0	Herpesvirus	IR6	protein
Arginase	PF00491.21	gi|384433062|ref|YP_005642420.1|	-	4.7e-79	265.8	0.0	5.6e-79	265.5	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
UDG	PF03167.19	gi|384433063|ref|YP_005642421.1|	-	7.7e-35	120.2	0.0	9.1e-35	119.9	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Pro_CA	PF00484.19	gi|384433066|ref|YP_005642424.1|	-	1.2e-08	35.4	0.1	4.3e-08	33.6	0.0	1.8	2	0	0	2	2	2	1	Carbonic	anhydrase
UvrD-helicase	PF00580.21	gi|384433066|ref|YP_005642424.1|	-	0.048	13.2	1.2	0.077	12.5	1.2	1.4	1	1	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
Cas_APE2256	PF09651.10	gi|384433066|ref|YP_005642424.1|	-	0.053	13.4	0.1	0.094	12.6	0.1	1.5	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_APE2256)
DUF433	PF04255.14	gi|384433067|ref|YP_005642425.1|	-	2.7e-14	52.7	0.0	1.1e-10	41.2	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF433)
GerE	PF00196.19	gi|384433067|ref|YP_005642425.1|	-	0.027	14.0	0.0	0.15	11.7	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|384433067|ref|YP_005642425.1|	-	0.16	11.6	0.0	0.45	10.1	0.0	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
Peptidase_M20	PF01546.28	gi|384433068|ref|YP_005642426.1|	-	3.8e-39	134.5	0.0	5.2e-39	134.1	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|384433068|ref|YP_005642426.1|	-	4.2e-16	58.8	0.0	1.1e-15	57.5	0.0	1.7	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
HpaB_N	PF11794.8	gi|384433069|ref|YP_005642427.1|	-	4.4e-92	308.6	0.5	4.4e-92	308.6	0.5	1.4	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|384433069|ref|YP_005642427.1|	-	2.3e-63	212.9	0.0	3.3e-63	212.4	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
CBS	PF00571.28	gi|384433071|ref|YP_005642429.1|	-	7.3e-49	164.0	15.3	2.7e-13	50.1	2.0	4.0	4	0	0	4	4	4	4	CBS	domain
IF3_N	PF05198.16	gi|384433071|ref|YP_005642429.1|	-	0.04	14.2	2.0	5.4	7.4	0.4	3.8	3	1	0	3	3	3	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Ribosomal_L9_C	PF03948.14	gi|384433071|ref|YP_005642429.1|	-	0.069	13.6	0.1	8.8	6.9	0.0	3.1	3	0	0	3	3	3	0	Ribosomal	protein	L9,	C-terminal	domain
Glyco_hydro_15	PF00723.21	gi|384433073|ref|YP_005642431.1|	-	2e-61	208.1	0.0	8.3e-60	202.8	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	15
TPR_19	PF14559.6	gi|384433073|ref|YP_005642431.1|	-	0.00071	20.0	0.0	0.024	15.1	0.0	2.3	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|384433073|ref|YP_005642431.1|	-	0.0011	19.1	0.0	0.041	14.1	0.0	2.5	2	0	0	2	2	2	1	Tetratricopeptide	repeat
Glyco_hydro_125	PF06824.11	gi|384433073|ref|YP_005642431.1|	-	0.012	14.5	0.0	0.058	12.3	0.0	1.9	2	0	0	2	2	2	0	Metal-independent	alpha-mannosidase	(GH125)
DUF608	PF04685.13	gi|384433073|ref|YP_005642431.1|	-	0.02	14.0	0.2	0.041	13.0	0.2	1.5	1	0	0	1	1	1	0	Glycosyl-hydrolase	family	116,	catalytic	region
ANAPC3	PF12895.7	gi|384433073|ref|YP_005642431.1|	-	0.054	13.7	0.0	0.2	11.9	0.0	1.9	2	0	0	2	2	2	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_4	PF07721.14	gi|384433073|ref|YP_005642431.1|	-	0.071	13.8	0.0	13	6.8	0.0	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|384433073|ref|YP_005642431.1|	-	0.092	13.6	0.0	0.63	11.0	0.0	2.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Nre_N	PF04894.12	gi|384433074|ref|YP_005642432.1|	-	2.5e-94	316.1	0.0	3.3e-94	315.7	0.0	1.2	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|384433074|ref|YP_005642432.1|	-	7e-35	119.3	0.0	1.1e-34	118.6	0.0	1.3	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
Radical_SAM	PF04055.21	gi|384433075|ref|YP_005642433.1|	-	4.2e-12	46.7	0.0	5.5e-12	46.4	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.11	gi|384433075|ref|YP_005642433.1|	-	0.00048	19.9	3.2	0.012	15.4	0.0	2.4	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF1848)
FERM_N_2	PF18038.1	gi|384433075|ref|YP_005642433.1|	-	0.03	15.1	0.6	0.069	14.0	0.6	1.5	1	0	0	1	1	1	0	FERM	N-terminal	domain
DUF2173	PF09941.9	gi|384433076|ref|YP_005642434.1|	-	1.8e-39	134.3	0.6	2.1e-39	134.1	0.6	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
FlgM	PF04316.13	gi|384433076|ref|YP_005642434.1|	-	0.041	14.2	0.0	0.27	11.6	0.0	2.2	2	0	0	2	2	2	0	Anti-sigma-28	factor,	FlgM
MFS_1	PF07690.16	gi|384433077|ref|YP_005642435.1|	-	3.2e-18	65.8	45.9	2.7e-10	39.7	21.5	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|384433077|ref|YP_005642435.1|	-	0.9	7.9	9.8	0.52	8.6	2.8	2.2	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Aldose_epim	PF01263.20	gi|384433078|ref|YP_005642436.1|	-	3.5e-36	125.0	0.0	7.9e-36	123.9	0.0	1.5	1	1	0	1	1	1	1	Aldose	1-epimerase
Linocin_M18	PF04454.12	gi|384433080|ref|YP_005642438.1|	-	2.1e-45	155.0	0.0	2.7e-45	154.7	0.0	1.1	1	0	0	1	1	1	1	Encapsulating	protein	for	peroxidase
Ferritin	PF00210.24	gi|384433080|ref|YP_005642438.1|	-	0.003	17.5	0.2	0.0054	16.7	0.2	1.4	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|384433080|ref|YP_005642438.1|	-	0.0033	17.8	1.1	0.0063	16.9	1.1	1.4	1	0	0	1	1	1	1	Rubrerythrin
Baculo_VP1054	PF05789.11	gi|384433080|ref|YP_005642438.1|	-	0.011	15.0	1.1	0.22	10.7	1.1	2.2	1	1	0	1	1	1	0	Baculovirus	VP1054	protein
AAA_16	PF13191.6	gi|384433081|ref|YP_005642439.1|	-	1.2e-05	25.8	0.0	2.8e-05	24.6	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|384433081|ref|YP_005642439.1|	-	2.8e-05	24.6	0.1	9.7e-05	22.9	0.0	1.9	2	0	0	2	2	2	1	ABC	transporter
AAA_22	PF13401.6	gi|384433081|ref|YP_005642439.1|	-	7e-05	23.1	0.0	0.00027	21.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|384433081|ref|YP_005642439.1|	-	0.00036	20.9	0.4	0.0021	18.4	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384433081|ref|YP_005642439.1|	-	0.0014	19.1	1.3	0.0089	16.4	0.1	2.8	2	2	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|384433081|ref|YP_005642439.1|	-	0.0031	17.4	1.5	0.026	14.4	0.1	2.9	3	1	0	3	3	3	1	NTPase
Img2	PF05046.14	gi|384433081|ref|YP_005642439.1|	-	0.0035	17.6	0.1	0.47	10.8	0.0	3.6	3	0	0	3	3	3	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
AAA_30	PF13604.6	gi|384433081|ref|YP_005642439.1|	-	0.0054	16.5	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|384433081|ref|YP_005642439.1|	-	0.0066	16.4	0.0	0.016	15.2	0.0	1.6	1	0	0	1	1	1	1	NACHT	domain
AAA_14	PF13173.6	gi|384433081|ref|YP_005642439.1|	-	0.014	15.4	2.2	0.18	11.8	0.1	2.9	1	1	1	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|384433081|ref|YP_005642439.1|	-	0.015	14.5	0.0	0.04	13.1	0.0	1.7	1	0	0	1	1	1	0	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|384433081|ref|YP_005642439.1|	-	0.015	15.2	0.0	0.04	13.8	0.0	1.7	1	0	0	1	1	1	0	RsgA	GTPase
AAA_5	PF07728.14	gi|384433081|ref|YP_005642439.1|	-	0.03	14.3	0.0	0.62	10.1	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ATP_bind_1	PF03029.17	gi|384433081|ref|YP_005642439.1|	-	0.036	13.9	0.1	0.16	11.8	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.19	gi|384433081|ref|YP_005642439.1|	-	0.036	13.6	0.2	0.082	12.5	0.1	1.6	2	0	0	2	2	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|384433081|ref|YP_005642439.1|	-	0.043	13.1	0.0	0.15	11.3	0.0	1.9	2	0	0	2	2	2	0	Zeta	toxin
U3snoRNP10	PF12397.8	gi|384433081|ref|YP_005642439.1|	-	0.051	13.9	1.1	8	6.9	0.0	2.7	3	0	0	3	3	2	0	U3	small	nucleolar	RNA-associated	protein	10
AAA_17	PF13207.6	gi|384433081|ref|YP_005642439.1|	-	0.053	13.9	0.0	0.27	11.7	0.0	2.2	2	0	0	2	2	1	0	AAA	domain
MCM	PF00493.23	gi|384433081|ref|YP_005642439.1|	-	0.084	12.0	0.0	0.15	11.1	0.0	1.3	1	0	0	1	1	1	0	MCM	P-loop	domain
AAA_25	PF13481.6	gi|384433081|ref|YP_005642439.1|	-	0.14	11.8	0.0	0.33	10.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF4795	PF16043.5	gi|384433081|ref|YP_005642439.1|	-	0.2	11.2	2.0	0.62	9.6	2.1	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
DUF3198	PF11433.8	gi|384433081|ref|YP_005642439.1|	-	0.25	11.3	1.7	17	5.4	0.2	3.2	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF3198)
DUF1803	PF08820.10	gi|384433082|ref|YP_005642440.1|	-	0.0025	17.8	0.9	0.0025	17.8	0.9	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1803)
SelB-wing_2	PF09106.11	gi|384433082|ref|YP_005642440.1|	-	0.0078	16.4	0.0	2.4	8.4	0.0	2.6	2	0	0	2	2	2	2	Elongation	factor	SelB,	winged	helix
Terminase_3	PF04466.13	gi|384433082|ref|YP_005642440.1|	-	0.0094	15.5	0.4	0.013	15.0	0.4	1.2	1	0	0	1	1	1	1	Phage	terminase	large	subunit
BLACT_WH	PF17778.1	gi|384433082|ref|YP_005642440.1|	-	0.016	15.2	0.4	0.031	14.3	0.4	1.4	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
MA3	PF02847.17	gi|384433082|ref|YP_005642440.1|	-	0.047	13.7	0.1	0.11	12.5	0.1	1.7	1	1	0	1	1	1	0	MA3	domain
FeoC	PF09012.10	gi|384433082|ref|YP_005642440.1|	-	0.087	12.9	0.4	0.23	11.6	0.1	1.7	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
Glyco_hydro_15	PF00723.21	gi|384433085|ref|YP_005642443.1|	-	6e-52	176.9	0.1	2.8e-48	164.8	0.5	2.0	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
TPR_8	PF13181.6	gi|384433085|ref|YP_005642443.1|	-	0.0019	18.3	0.2	0.53	10.6	0.0	3.3	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|384433085|ref|YP_005642443.1|	-	0.015	15.8	0.0	0.74	10.4	0.0	3.0	3	0	0	3	3	3	0	Tetratricopeptide	repeat
SPOB_a	PF14689.6	gi|384433085|ref|YP_005642443.1|	-	0.14	11.9	0.0	0.43	10.3	0.0	1.8	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Glycos_transf_1	PF00534.20	gi|384433086|ref|YP_005642444.1|	-	1.7e-34	118.9	0.5	2.7e-34	118.2	0.1	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384433086|ref|YP_005642444.1|	-	5.5e-24	85.1	0.0	9.5e-24	84.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|384433086|ref|YP_005642444.1|	-	0.00012	22.4	0.0	0.00043	20.6	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_20	PF00982.21	gi|384433086|ref|YP_005642444.1|	-	0.0025	16.6	1.1	0.035	12.8	0.2	2.6	2	1	1	3	3	3	1	Glycosyltransferase	family	20
TPP_enzyme_C	PF02775.21	gi|384433087|ref|YP_005642445.1|	-	1.8e-22	79.8	0.5	2.4e-22	79.4	0.5	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.20	gi|384433087|ref|YP_005642445.1|	-	0.0015	17.6	0.1	0.0021	17.1	0.1	1.2	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|384433087|ref|YP_005642445.1|	-	0.071	12.3	0.4	0.18	11.0	0.3	1.6	1	1	1	2	2	2	0	1-deoxy-D-xylulose-5-phosphate	synthase
POR_N	PF01855.19	gi|384433088|ref|YP_005642446.1|	-	9.7e-68	228.3	0.0	1.3e-67	228.0	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|384433088|ref|YP_005642446.1|	-	2e-27	95.5	0.1	4.5e-27	94.3	0.0	1.6	2	0	0	2	2	2	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|384433088|ref|YP_005642446.1|	-	2.3e-06	27.5	0.0	4.4e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|384433088|ref|YP_005642446.1|	-	0.00063	19.4	0.2	0.001	18.7	0.2	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
SHOCT	PF09851.9	gi|384433088|ref|YP_005642446.1|	-	0.19	11.5	0.6	0.41	10.4	0.3	1.8	2	0	0	2	2	2	0	Short	C-terminal	domain
Fer4	PF00037.27	gi|384433089|ref|YP_005642447.1|	-	3e-16	58.5	15.5	7e-09	35.1	4.8	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|384433089|ref|YP_005642447.1|	-	7.4e-13	48.0	14.7	2.6e-06	27.2	2.7	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433089|ref|YP_005642447.1|	-	9.6e-12	44.9	9.2	1.3e-11	44.4	9.2	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433089|ref|YP_005642447.1|	-	4.3e-11	42.7	21.9	3.8e-08	33.3	11.9	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433089|ref|YP_005642447.1|	-	1.8e-10	41.2	22.8	1.6e-08	35.0	13.1	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384433089|ref|YP_005642447.1|	-	9.7e-10	38.0	12.9	7.5e-05	22.6	2.2	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384433089|ref|YP_005642447.1|	-	6.7e-09	35.8	10.8	9.1e-09	35.4	10.8	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384433089|ref|YP_005642447.1|	-	1e-08	35.9	10.3	0.00014	22.8	2.4	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|384433089|ref|YP_005642447.1|	-	1.1e-07	31.8	13.4	0.00072	19.9	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|384433089|ref|YP_005642447.1|	-	6.8e-06	26.5	9.4	0.0023	18.4	0.9	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|384433089|ref|YP_005642447.1|	-	1.2e-05	25.9	10.0	0.044	14.5	0.3	2.9	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|384433089|ref|YP_005642447.1|	-	4.9e-05	23.8	6.6	0.033	14.7	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|384433089|ref|YP_005642447.1|	-	0.00033	21.5	8.2	0.091	13.6	1.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384433089|ref|YP_005642447.1|	-	0.0014	19.0	14.9	0.048	14.1	3.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384433089|ref|YP_005642447.1|	-	0.0054	17.6	19.6	0.18	12.8	8.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|384433089|ref|YP_005642447.1|	-	0.81	9.9	11.2	2.7	8.2	1.4	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|384433090|ref|YP_005642448.1|	-	5.8e-34	117.7	0.0	7.9e-34	117.3	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4_11	PF13247.6	gi|384433091|ref|YP_005642449.1|	-	5.6e-21	74.6	8.9	5.6e-21	74.6	8.9	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384433091|ref|YP_005642449.1|	-	4.9e-13	48.3	38.6	1.4e-07	31.0	2.1	5.2	6	0	0	6	6	5	4	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|384433091|ref|YP_005642449.1|	-	2.1e-12	47.4	27.2	1.1e-06	29.1	9.4	3.0	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433091|ref|YP_005642449.1|	-	4e-12	45.6	31.7	1e-06	28.5	1.8	4.4	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384433091|ref|YP_005642449.1|	-	1.8e-11	44.0	23.6	4e-06	26.9	11.1	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384433091|ref|YP_005642449.1|	-	2.4e-09	37.2	21.5	5.5e-05	23.2	3.5	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433091|ref|YP_005642449.1|	-	1.2e-08	34.9	32.7	2.4e-06	27.5	8.3	3.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384433091|ref|YP_005642449.1|	-	1.3e-07	31.3	29.9	4.6e-05	23.3	1.5	4.5	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|384433091|ref|YP_005642449.1|	-	2.3e-07	31.7	25.7	0.018	16.0	1.8	4.4	3	1	1	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|384433091|ref|YP_005642449.1|	-	2.4e-05	24.9	39.4	0.052	14.5	2.0	4.2	4	0	0	4	4	4	3	4Fe-4S	binding	domain
DmsC	PF04976.12	gi|384433091|ref|YP_005642449.1|	-	7.4e-05	22.4	10.9	9e-05	22.1	9.8	1.7	1	1	0	1	1	1	1	DMSO	reductase	anchor	subunit	(DmsC)
Fer4_4	PF12800.7	gi|384433091|ref|YP_005642449.1|	-	0.0013	19.1	33.3	0.0022	18.3	3.1	4.5	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|384433091|ref|YP_005642449.1|	-	0.011	16.0	1.5	0.011	16.0	1.5	3.4	1	1	1	3	3	3	0	4Fe-4S	dicluster	domain
DUF997	PF06196.12	gi|384433091|ref|YP_005642449.1|	-	0.019	15.0	0.2	0.019	15.0	0.2	3.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
Fer4_17	PF13534.6	gi|384433091|ref|YP_005642449.1|	-	0.062	13.8	25.9	1.4	9.5	4.4	4.3	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|384433091|ref|YP_005642449.1|	-	0.13	13.0	0.3	0.13	13.0	0.3	3.7	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|384433091|ref|YP_005642449.1|	-	0.43	11.2	25.3	4.1	8.0	8.5	3.4	2	2	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|384433091|ref|YP_005642449.1|	-	1.5	9.4	31.0	27	5.3	13.5	3.9	2	2	1	3	3	3	0	4Fe-4S	dicluster	domain
RepB-RCR_reg	PF10723.9	gi|384433092|ref|YP_005642450.1|	-	0.054	13.4	0.1	0.09	12.7	0.1	1.3	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
Ald_Xan_dh_C2	PF02738.18	gi|384433093|ref|YP_005642451.1|	-	8.7e-134	447.0	0.0	1e-133	446.7	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384433093|ref|YP_005642451.1|	-	5.2e-15	55.7	0.0	1.1e-14	54.7	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF167	PF02594.16	gi|384433093|ref|YP_005642451.1|	-	0.0018	18.3	0.1	0.55	10.4	0.0	3.3	3	0	0	3	3	3	1	Uncharacterised	ACR,	YggU	family	COG1872
Acyl-CoA_dh_1	PF00441.24	gi|384433094|ref|YP_005642452.1|	-	6.4e-38	130.3	0.7	1.1e-37	129.6	0.7	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|384433094|ref|YP_005642452.1|	-	6.3e-24	84.8	0.0	1.4e-23	83.7	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|384433094|ref|YP_005642452.1|	-	4.8e-23	81.2	0.0	9.5e-23	80.2	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|384433094|ref|YP_005642452.1|	-	3.8e-17	62.8	0.1	6.5e-17	62.1	0.1	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
CBM39	PF15886.5	gi|384433094|ref|YP_005642452.1|	-	0.16	11.8	0.0	0.35	10.8	0.0	1.5	1	0	0	1	1	1	0	Carbohydrate	binding	domain	(family	32)
ETF_alpha	PF00766.19	gi|384433095|ref|YP_005642453.1|	-	1.2e-31	108.5	0.7	2.5e-31	107.6	0.4	1.7	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|384433095|ref|YP_005642453.1|	-	4.4e-17	62.6	0.1	9.3e-17	61.5	0.1	1.5	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF	PF01012.21	gi|384433096|ref|YP_005642454.1|	-	8.1e-36	123.6	0.1	1e-35	123.3	0.1	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
Fer4_10	PF13237.6	gi|384433097|ref|YP_005642455.1|	-	9.2e-06	25.7	5.2	9.2e-06	25.7	5.2	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384433097|ref|YP_005642455.1|	-	0.00034	20.3	11.9	0.00066	19.4	0.4	3.1	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384433097|ref|YP_005642455.1|	-	0.00035	20.7	4.6	0.00073	19.7	4.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433097|ref|YP_005642455.1|	-	0.00052	20.5	12.5	0.0019	18.7	9.4	2.7	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384433097|ref|YP_005642455.1|	-	0.042	13.9	8.4	0.51	10.5	3.1	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_11	PF13247.6	gi|384433097|ref|YP_005642455.1|	-	0.08	13.1	1.2	0.16	12.1	1.2	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384433097|ref|YP_005642455.1|	-	0.35	11.1	2.8	0.73	10.0	2.8	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|384433097|ref|YP_005642455.1|	-	0.8	9.5	4.8	0.57	10.0	2.0	2.0	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.6	gi|384433097|ref|YP_005642455.1|	-	0.99	10.4	8.2	15	6.6	0.4	2.3	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.7	gi|384433097|ref|YP_005642455.1|	-	1.1	10.4	13.5	3.3	8.9	1.3	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|384433097|ref|YP_005642455.1|	-	1.6	8.9	14.7	0.58	10.3	0.3	2.7	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Phage_holin_3_5	PF16085.5	gi|384433097|ref|YP_005642455.1|	-	2.2	8.5	6.4	1.1	9.4	0.3	3.2	3	0	0	3	3	3	0	Bacteriophage	holin	Hol,	superfamily	III
Fer4_4	PF12800.7	gi|384433097|ref|YP_005642455.1|	-	6.9	7.5	15.9	3.6	8.3	2.9	2.8	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433097|ref|YP_005642455.1|	-	9.6	6.4	15.3	3.1	8.0	3.3	2.6	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Pyr_redox_2	PF07992.14	gi|384433098|ref|YP_005642456.1|	-	3e-39	135.0	2.0	3.4e-39	134.8	2.0	1.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384433098|ref|YP_005642456.1|	-	7.2e-20	71.5	0.6	7.4e-16	58.3	0.2	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384433098|ref|YP_005642456.1|	-	6e-08	33.1	3.4	0.00053	20.5	0.1	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384433098|ref|YP_005642456.1|	-	2.2e-07	30.8	0.5	0.0004	20.1	0.2	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|384433098|ref|YP_005642456.1|	-	2.8e-06	26.7	1.2	3.3e-05	23.2	0.2	2.5	2	1	1	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|384433098|ref|YP_005642456.1|	-	4.2e-05	23.7	0.4	9.6e-05	22.5	0.4	1.7	1	1	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|384433098|ref|YP_005642456.1|	-	5.6e-05	22.4	3.7	0.00084	18.5	0.0	2.8	2	1	1	3	3	3	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|384433098|ref|YP_005642456.1|	-	0.00036	19.9	0.2	0.007	15.6	0.0	2.3	2	0	0	2	2	2	1	Thi4	family
HI0933_like	PF03486.14	gi|384433098|ref|YP_005642456.1|	-	0.0004	19.2	0.4	0.091	11.4	0.0	2.6	3	0	0	3	3	3	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384433098|ref|YP_005642456.1|	-	0.0018	17.7	0.5	0.0028	17.1	0.0	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|384433098|ref|YP_005642456.1|	-	0.02	14.1	0.0	17	4.4	0.0	3.0	2	1	1	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.12	gi|384433098|ref|YP_005642456.1|	-	0.14	11.2	0.8	0.34	9.9	0.1	1.9	3	0	0	3	3	3	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|384433098|ref|YP_005642456.1|	-	0.18	11.0	0.0	0.26	10.5	0.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
DUF4407	PF14362.6	gi|384433099|ref|YP_005642457.1|	-	0.0032	16.9	0.9	0.0054	16.1	0.9	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
TMPIT	PF07851.13	gi|384433099|ref|YP_005642457.1|	-	0.021	14.1	0.8	0.021	14.1	0.8	2.2	2	0	0	2	2	2	0	TMPIT-like	protein
DUF2935	PF11155.8	gi|384433099|ref|YP_005642457.1|	-	0.023	15.0	0.3	0.023	15.0	0.3	3.3	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF2935)
Baculo_PEP_C	PF04513.12	gi|384433099|ref|YP_005642457.1|	-	0.029	14.4	0.8	0.029	14.4	0.8	3.2	3	0	0	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
YlqD	PF11068.8	gi|384433099|ref|YP_005642457.1|	-	0.046	14.1	5.8	0.14	12.5	1.2	2.6	2	0	0	2	2	2	0	YlqD	protein
DUF2203	PF09969.9	gi|384433099|ref|YP_005642457.1|	-	0.055	14.2	9.8	0.24	12.1	0.9	2.9	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
HBD	PF18534.1	gi|384433099|ref|YP_005642457.1|	-	0.065	13.4	2.0	0.12	12.5	0.4	2.3	2	0	0	2	2	1	0	Helical	bundle	domain
APG6_N	PF17675.1	gi|384433099|ref|YP_005642457.1|	-	0.077	13.5	14.5	0.86	10.1	6.1	3.0	2	1	0	2	2	2	0	Apg6	coiled-coil	region
DCB	PF16213.5	gi|384433099|ref|YP_005642457.1|	-	0.088	12.5	3.1	0.18	11.5	0.0	2.7	2	1	0	2	2	2	0	Dimerisation	and	cyclophilin-binding	domain	of	Mon2
CdvA	PF18822.1	gi|384433099|ref|YP_005642457.1|	-	0.097	12.5	19.2	0.046	13.6	2.2	3.3	1	1	2	3	3	3	0	CdvA-like	coiled-coil	domain
DUF5638	PF18688.1	gi|384433099|ref|YP_005642457.1|	-	0.11	12.8	20.9	0.51	10.7	1.1	5.3	5	1	0	6	6	6	0	Family	of	unknown	function	(DUF5638)
DUF948	PF06103.11	gi|384433099|ref|YP_005642457.1|	-	0.16	12.3	8.1	1.8	8.9	0.6	3.5	3	1	1	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Exonuc_VII_L	PF02601.15	gi|384433099|ref|YP_005642457.1|	-	0.17	11.4	4.9	0.29	10.7	4.5	1.5	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Spectrin	PF00435.21	gi|384433099|ref|YP_005642457.1|	-	0.21	12.1	7.7	0.19	12.2	0.5	2.7	3	0	0	3	3	2	0	Spectrin	repeat
Phasin	PF05597.11	gi|384433099|ref|YP_005642457.1|	-	0.23	11.5	7.7	3.1	7.8	1.4	3.4	2	1	1	3	3	3	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
FCH	PF00611.23	gi|384433099|ref|YP_005642457.1|	-	0.25	11.7	3.3	1.1	9.6	3.0	2.4	1	1	0	1	1	1	0	Fes/CIP4,	and	EFC/F-BAR	homology	domain
DUF883	PF05957.13	gi|384433099|ref|YP_005642457.1|	-	0.27	11.9	3.5	6.1	7.5	0.2	3.3	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Occludin_ELL	PF07303.13	gi|384433099|ref|YP_005642457.1|	-	0.29	11.9	9.1	0.35	11.6	2.0	3.5	3	1	1	4	4	3	0	Occludin	homology	domain
Apolipoprotein	PF01442.18	gi|384433099|ref|YP_005642457.1|	-	0.35	10.7	3.3	11	5.8	3.4	2.2	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
zf-C4H2	PF10146.9	gi|384433099|ref|YP_005642457.1|	-	0.46	10.7	10.6	0.041	14.2	2.1	2.4	2	0	0	2	2	2	0	Zinc	finger-containing	protein
Goodbye	PF17109.5	gi|384433099|ref|YP_005642457.1|	-	0.48	10.9	4.2	0.85	10.1	0.4	2.8	2	2	1	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
DUF1664	PF07889.12	gi|384433099|ref|YP_005642457.1|	-	0.53	10.3	8.3	0.58	10.2	0.6	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Prominin	PF05478.11	gi|384433099|ref|YP_005642457.1|	-	1.1	7.2	18.7	3.9	5.3	17.2	2.1	1	1	1	2	2	2	0	Prominin
ISG65-75	PF11727.8	gi|384433099|ref|YP_005642457.1|	-	1.2	8.3	10.4	0.51	9.5	1.4	2.3	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
Med21	PF11221.8	gi|384433099|ref|YP_005642457.1|	-	1.5	9.1	5.5	0.24	11.6	0.4	2.3	2	1	0	2	2	2	0	Subunit	21	of	Mediator	complex
AI-2E_transport	PF01594.16	gi|384433099|ref|YP_005642457.1|	-	1.7	7.7	3.4	19	4.3	0.3	2.3	2	0	0	2	2	2	0	AI-2E	family	transporter
DUF2524	PF10732.9	gi|384433099|ref|YP_005642457.1|	-	1.7	9.0	4.7	7.4	6.9	0.2	3.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2524)
Lebercilin	PF15619.6	gi|384433099|ref|YP_005642457.1|	-	1.8	8.2	12.0	9.9	5.8	11.7	2.2	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Bacillus_HBL	PF05791.11	gi|384433099|ref|YP_005642457.1|	-	2.1	8.1	20.0	0.068	13.0	5.8	2.8	2	1	1	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
Syntaxin-6_N	PF09177.11	gi|384433099|ref|YP_005642457.1|	-	2.2	8.9	13.3	0.78	10.3	2.5	3.3	2	2	0	2	2	2	0	Syntaxin	6,	N-terminal
HIP1_clath_bdg	PF16515.5	gi|384433099|ref|YP_005642457.1|	-	5.4	7.7	9.5	14	6.4	1.6	3.2	2	2	0	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
ACCA	PF03255.14	gi|384433099|ref|YP_005642457.1|	-	9.7	6.1	9.0	21	5.0	1.8	2.8	2	1	0	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
MS_channel	PF00924.18	gi|384433102|ref|YP_005642460.1|	-	1.7e-28	99.6	1.5	3.1e-28	98.7	1.5	1.4	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Amidohydro_3	PF07969.11	gi|384433103|ref|YP_005642461.1|	-	6.9e-29	101.6	0.0	2.1e-23	83.5	0.0	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|384433103|ref|YP_005642461.1|	-	2.8e-12	46.6	0.0	5.8e-12	45.6	0.0	1.5	1	1	0	1	1	1	1	Amidohydrolase	family
OFeT_1	PF16955.5	gi|384433104|ref|YP_005642462.1|	-	1.5e-108	361.2	18.7	1.7e-108	361.1	18.7	1.0	1	0	0	1	1	1	1	Ferrous	iron	uptake	permease,	iron-lead	transporter
TerC	PF03741.16	gi|384433104|ref|YP_005642462.1|	-	0.017	14.8	7.7	0.049	13.3	7.6	1.8	1	1	0	1	1	1	0	Integral	membrane	protein	TerC	family
UPF0016	PF01169.19	gi|384433104|ref|YP_005642462.1|	-	0.38	11.1	15.2	1.4	9.3	3.3	2.4	2	1	0	2	2	2	0	Uncharacterized	protein	family	UPF0016
DUF2613	PF11021.8	gi|384433104|ref|YP_005642462.1|	-	0.71	10.0	6.5	0.21	11.7	1.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
MASE5	PF17178.4	gi|384433104|ref|YP_005642462.1|	-	2	8.2	14.0	0.085	12.7	3.1	2.2	2	0	0	2	2	2	0	Membrane-associated	sensor
FAA_hydrolase	PF01557.18	gi|384433105|ref|YP_005642463.1|	-	6e-73	245.1	0.0	7.2e-73	244.9	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
TPP_enzyme_N	PF02776.18	gi|384433106|ref|YP_005642464.1|	-	1.6e-45	154.8	0.0	1.1e-44	152.1	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|384433106|ref|YP_005642464.1|	-	9.4e-33	113.2	0.1	6.6e-32	110.4	0.0	2.2	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|384433106|ref|YP_005642464.1|	-	4.6e-20	71.7	0.0	1.1e-19	70.5	0.0	1.7	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Glycos_transf_1	PF00534.20	gi|384433107|ref|YP_005642465.1|	-	3.7e-32	111.2	0.3	7.1e-32	110.3	0.3	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384433107|ref|YP_005642465.1|	-	1.1e-24	87.4	0.0	2.4e-24	86.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|384433107|ref|YP_005642465.1|	-	7.9e-20	71.5	1.0	1.5e-19	70.6	1.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|384433107|ref|YP_005642465.1|	-	1e-08	35.4	0.0	2.5e-08	34.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|384433107|ref|YP_005642465.1|	-	9.3e-07	29.4	0.0	5.7e-06	26.9	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
L31	PF09784.9	gi|384433107|ref|YP_005642465.1|	-	0.046	14.2	0.1	13	6.3	0.0	2.5	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L31
Fer4_10	PF13237.6	gi|384433108|ref|YP_005642466.1|	-	4.9e-08	33.0	7.5	6.4e-08	32.6	7.5	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433108|ref|YP_005642466.1|	-	5.6e-08	33.3	7.2	0.0021	18.6	2.0	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384433108|ref|YP_005642466.1|	-	3.2e-07	30.4	5.3	4.5e-07	29.9	5.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433108|ref|YP_005642466.1|	-	1.3e-06	28.2	10.1	0.001	19.0	2.4	2.6	2	1	0	2	2	2	2	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|384433108|ref|YP_005642466.1|	-	1.4e-06	28.4	3.4	2.6e-06	27.5	3.4	1.5	1	1	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_2	PF12797.7	gi|384433108|ref|YP_005642466.1|	-	2.3e-06	27.4	13.0	4.9e-05	23.2	3.5	2.6	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433108|ref|YP_005642466.1|	-	2.4e-06	27.5	3.0	0.015	15.4	1.0	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|384433108|ref|YP_005642466.1|	-	8.1e-06	25.9	2.0	9.4e-06	25.7	2.0	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384433108|ref|YP_005642466.1|	-	9.8e-05	23.2	2.8	0.23	12.4	0.1	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|384433108|ref|YP_005642466.1|	-	0.00015	22.2	2.9	0.17	12.4	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|384433108|ref|YP_005642466.1|	-	0.0021	17.8	7.6	0.008	15.9	1.8	2.1	1	1	1	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4	PF00037.27	gi|384433108|ref|YP_005642466.1|	-	0.0044	16.8	14.6	0.02	14.7	1.8	3.9	3	1	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|384433108|ref|YP_005642466.1|	-	0.0077	17.1	13.8	0.099	13.6	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|384433108|ref|YP_005642466.1|	-	0.023	14.9	1.7	0.039	14.1	1.7	1.3	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384433108|ref|YP_005642466.1|	-	0.11	13.0	10.5	2.8	8.7	2.4	2.5	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384433108|ref|YP_005642466.1|	-	0.13	12.8	6.8	3.2	8.4	0.3	2.1	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
DAO	PF01266.24	gi|384433109|ref|YP_005642467.1|	-	8e-16	58.6	0.0	5.1e-07	29.6	0.0	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|384433109|ref|YP_005642467.1|	-	1.7e-12	47.4	0.0	2.4e-12	46.9	0.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|384433109|ref|YP_005642467.1|	-	5.3e-11	42.2	0.7	7.8e-11	41.7	0.7	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384433109|ref|YP_005642467.1|	-	4.3e-10	39.3	0.4	1.9e-05	24.0	0.1	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|384433109|ref|YP_005642467.1|	-	3.8e-09	36.1	0.0	5.9e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|384433109|ref|YP_005642467.1|	-	1e-08	34.4	0.6	4.1e-06	25.7	0.1	2.5	3	0	0	3	3	3	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|384433109|ref|YP_005642467.1|	-	1.3e-08	34.5	0.0	1.9e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|384433109|ref|YP_005642467.1|	-	3.5e-08	33.1	2.6	0.00023	20.5	0.5	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|384433109|ref|YP_005642467.1|	-	1.2e-07	31.2	0.1	6.6e-07	28.8	0.1	1.9	1	1	0	1	1	1	1	Thi4	family
Trp_halogenase	PF04820.14	gi|384433109|ref|YP_005642467.1|	-	2.1e-07	30.2	1.2	0.00042	19.3	0.0	3.0	2	1	1	3	3	3	1	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|384433109|ref|YP_005642467.1|	-	1.1e-05	25.5	0.2	3.8e-05	23.8	0.2	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|384433109|ref|YP_005642467.1|	-	3.2e-05	23.2	0.3	6e-05	22.3	0.3	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
AlaDh_PNT_C	PF01262.21	gi|384433109|ref|YP_005642467.1|	-	0.0019	17.5	0.1	0.0043	16.4	0.1	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|384433109|ref|YP_005642467.1|	-	0.0067	17.0	3.9	0.058	14.0	0.5	2.8	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
PCRF	PF03462.18	gi|384433110|ref|YP_005642468.1|	-	0.036	13.9	0.1	0.041	13.7	0.1	1.0	1	0	0	1	1	1	0	PCRF	domain
DUF5087	PF17006.5	gi|384433110|ref|YP_005642468.1|	-	0.15	11.6	6.0	0.045	13.3	1.6	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5087)
Usp	PF00582.26	gi|384433111|ref|YP_005642469.1|	-	6.9e-37	127.1	0.1	7.6e-37	127.0	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
EF_assoc_2	PF08356.12	gi|384433111|ref|YP_005642469.1|	-	0.19	11.8	0.1	0.33	11.0	0.1	1.3	1	0	0	1	1	1	0	EF	hand	associated
Aldo_ket_red	PF00248.21	gi|384433112|ref|YP_005642470.1|	-	8.9e-61	205.7	0.0	7.2e-59	199.4	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
HEPN	PF05168.14	gi|384433113|ref|YP_005642471.1|	-	3.8e-22	78.6	0.6	5.1e-22	78.2	0.6	1.0	1	0	0	1	1	1	1	HEPN	domain
TPR_10	PF13374.6	gi|384433113|ref|YP_005642471.1|	-	0.28	11.1	2.9	7.2	6.6	0.5	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
NTP_transf_2	PF01909.23	gi|384433114|ref|YP_005642472.1|	-	9.1e-10	38.7	0.6	1.6e-09	37.9	0.6	1.6	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384433114|ref|YP_005642472.1|	-	9.5e-08	32.0	0.8	1.1e-07	31.8	0.2	1.5	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|384433114|ref|YP_005642472.1|	-	0.0091	15.8	0.0	0.03	14.1	0.0	1.7	2	0	0	2	2	2	1	Putative	nucleotidyltransferase	DUF294
OrfB_Zn_ribbon	PF07282.11	gi|384433115|ref|YP_005642473.1|	-	1.8e-26	91.8	0.1	3.2e-26	91.1	0.1	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384433115|ref|YP_005642473.1|	-	3.7e-18	65.9	0.4	2.2e-17	63.4	0.0	2.3	2	1	1	3	3	3	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|384433115|ref|YP_005642473.1|	-	0.016	14.8	1.6	0.6	9.7	0.0	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|384433115|ref|YP_005642473.1|	-	0.063	12.7	1.3	0.85	9.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
RecR	PF02132.15	gi|384433115|ref|YP_005642473.1|	-	0.12	12.0	0.3	3.2	7.4	0.0	2.4	2	0	0	2	2	2	0	RecR	protein
Rubredoxin_2	PF18073.1	gi|384433115|ref|YP_005642473.1|	-	0.16	11.7	1.4	2.1	8.1	0.1	2.5	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF5388	PF17363.2	gi|384433116|ref|YP_005642474.1|	-	0.01	16.0	0.7	0.048	13.9	0.5	1.9	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5388)
RHH_1	PF01402.21	gi|384433116|ref|YP_005642474.1|	-	0.028	14.3	1.9	0.032	14.2	0.2	1.9	1	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
ATG16	PF08614.11	gi|384433116|ref|YP_005642474.1|	-	0.041	14.1	1.2	0.054	13.7	1.2	1.3	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Beta-lactamase2	PF13354.6	gi|384433116|ref|YP_005642474.1|	-	0.15	11.6	0.0	0.15	11.6	0.0	1.1	1	0	0	1	1	1	0	Beta-lactamase	enzyme	family
FtsA	PF14450.6	gi|384433116|ref|YP_005642474.1|	-	0.16	12.4	0.1	0.18	12.2	0.1	1.2	1	0	0	1	1	1	0	Cell	division	protein	FtsA
Lipoprotein_19	PF13617.6	gi|384433116|ref|YP_005642474.1|	-	0.21	11.4	4.2	0.33	10.8	0.3	2.2	2	0	0	2	2	2	0	YnbE-like	lipoprotein
PIN	PF01850.21	gi|384433117|ref|YP_005642475.1|	-	4.4e-16	59.5	1.6	5.3e-16	59.2	1.6	1.1	1	0	0	1	1	1	1	PIN	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433118|ref|YP_005642476.1|	-	2.9e-26	91.2	0.1	5.3e-26	90.3	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384433118|ref|YP_005642476.1|	-	2.8e-18	66.3	0.6	1.1e-17	64.4	0.0	2.2	2	1	1	3	3	3	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|384433118|ref|YP_005642476.1|	-	0.018	14.6	1.6	0.65	9.6	0.0	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|384433118|ref|YP_005642476.1|	-	0.072	12.5	1.3	0.92	9.0	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|384433118|ref|YP_005642476.1|	-	0.11	12.3	1.1	2.3	8.0	0.1	2.7	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
RecR	PF02132.15	gi|384433118|ref|YP_005642476.1|	-	0.12	12.0	0.3	3.4	7.3	0.0	2.6	2	0	0	2	2	2	0	RecR	protein
DUF5528	PF17666.1	gi|384433118|ref|YP_005642476.1|	-	1.1	9.2	4.5	1.5	8.7	0.5	2.5	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5528)
MS_channel	PF00924.18	gi|384433120|ref|YP_005642478.1|	-	4.9e-18	65.4	7.3	4.9e-18	65.4	7.3	2.2	2	1	0	2	2	2	1	Mechanosensitive	ion	channel
SNARE_assoc	PF09335.11	gi|384433121|ref|YP_005642479.1|	-	7.2e-20	71.7	8.4	7.2e-20	71.7	8.4	1.7	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
PDR_assoc	PF08370.11	gi|384433121|ref|YP_005642479.1|	-	4.2	7.2	9.4	8	6.3	0.4	3.3	3	0	0	3	3	3	0	Plant	PDR	ABC	transporter	associated
NTP_transf_5	PF14907.6	gi|384433122|ref|YP_005642480.1|	-	0.2	11.2	0.2	0.29	10.7	0.2	1.2	1	0	0	1	1	1	0	Uncharacterised	nucleotidyltransferase
Phosphoesterase	PF04185.14	gi|384433123|ref|YP_005642481.1|	-	1.4e-84	284.4	3.0	3e-84	283.2	3.0	1.5	1	1	0	1	1	1	1	Phosphoesterase	family
DUF2299	PF10061.9	gi|384433124|ref|YP_005642482.1|	-	2.5e-38	130.9	0.1	2.9e-38	130.7	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
HAD_2	PF13419.6	gi|384433125|ref|YP_005642483.1|	-	0.00041	20.5	0.0	0.00051	20.2	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Fer4_7	PF12838.7	gi|384433126|ref|YP_005642484.1|	-	1e-06	29.2	15.5	0.0037	17.8	0.8	3.6	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433126|ref|YP_005642484.1|	-	1.5e-06	28.2	21.8	0.00011	22.2	1.1	3.9	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384433126|ref|YP_005642484.1|	-	6.2e-05	22.6	3.9	6.2e-05	22.6	3.9	5.2	6	0	0	6	6	6	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384433126|ref|YP_005642484.1|	-	0.00011	22.2	20.2	0.002	18.2	9.1	3.8	3	1	2	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384433126|ref|YP_005642484.1|	-	0.00012	22.6	10.7	0.38	11.3	0.1	4.1	4	1	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433126|ref|YP_005642484.1|	-	0.00016	21.6	4.7	0.00016	21.6	4.7	4.0	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433126|ref|YP_005642484.1|	-	0.00074	19.6	7.8	0.00074	19.6	7.8	2.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384433126|ref|YP_005642484.1|	-	0.0024	17.8	3.3	0.0024	17.8	3.3	4.8	5	0	0	5	5	4	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|384433126|ref|YP_005642484.1|	-	0.0029	18.3	8.4	0.068	13.9	0.3	4.0	4	0	0	4	4	4	1	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.7	gi|384433126|ref|YP_005642484.1|	-	0.031	14.8	2.5	0.031	14.8	2.5	4.6	5	0	0	5	5	5	0	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|384433126|ref|YP_005642484.1|	-	0.088	13.3	16.6	0.77	10.2	1.9	3.6	2	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|384433126|ref|YP_005642484.1|	-	0.09	13.6	6.9	3.2	8.7	0.1	3.4	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_19	PF06902.11	gi|384433126|ref|YP_005642484.1|	-	0.11	12.6	4.1	7.6	6.7	0.0	3.2	3	0	0	3	3	3	0	Divergent	4Fe-4S	mono-cluster
Fer4_13	PF13370.6	gi|384433126|ref|YP_005642484.1|	-	3.7	8.2	15.2	7.7	7.2	2.1	4.4	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Nitrate_red_del	PF02613.15	gi|384433127|ref|YP_005642485.1|	-	2.6e-19	69.6	0.0	3.6e-19	69.1	0.0	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Fer4_11	PF13247.6	gi|384433128|ref|YP_005642486.1|	-	2.9e-19	69.1	7.2	2.9e-19	69.1	7.2	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433128|ref|YP_005642486.1|	-	4.6e-12	46.3	11.5	1.1e-05	25.9	3.7	3.0	2	2	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433128|ref|YP_005642486.1|	-	2.8e-08	33.7	16.2	1.5e-05	25.0	5.8	3.3	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384433128|ref|YP_005642486.1|	-	6.6e-07	29.4	14.2	0.0079	16.3	7.2	3.1	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384433128|ref|YP_005642486.1|	-	3.7e-06	27.3	9.8	1.4e-05	25.4	0.4	3.0	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384433128|ref|YP_005642486.1|	-	0.0014	18.4	24.4	0.044	13.6	0.8	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384433128|ref|YP_005642486.1|	-	0.0096	16.0	24.9	0.14	12.3	0.9	4.6	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|384433128|ref|YP_005642486.1|	-	0.02	15.4	1.3	0.02	15.4	1.3	4.9	5	1	0	5	5	5	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384433128|ref|YP_005642486.1|	-	0.034	14.7	17.1	0.13	12.8	0.2	3.8	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384433128|ref|YP_005642486.1|	-	0.15	12.3	22.3	0.27	11.4	1.1	3.6	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384433128|ref|YP_005642486.1|	-	0.51	11.4	32.0	0.17	12.9	5.7	4.4	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|384433128|ref|YP_005642486.1|	-	5.5	7.9	13.9	0.88	10.5	0.3	3.3	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384433128|ref|YP_005642486.1|	-	8.8	7.3	21.7	1.3	10.0	0.2	3.8	2	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Molybdopterin	PF00384.22	gi|384433129|ref|YP_005642487.1|	-	2.4e-06	26.8	0.0	0.17	10.8	0.0	3.7	2	1	0	2	2	2	2	Molybdopterin	oxidoreductase
TAT_signal	PF10518.9	gi|384433129|ref|YP_005642487.1|	-	9.5e-06	25.2	0.4	2.4e-05	24.0	0.4	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molydop_binding	PF01568.21	gi|384433129|ref|YP_005642487.1|	-	0.018	15.0	0.0	0.051	13.6	0.0	1.8	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|384433129|ref|YP_005642487.1|	-	0.093	12.7	0.2	0.21	11.6	0.2	1.5	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
TPR_19	PF14559.6	gi|384433130|ref|YP_005642488.1|	-	1.7e-21	76.5	5.1	1e-05	25.9	0.0	4.4	2	1	3	5	5	5	5	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|384433130|ref|YP_005642488.1|	-	4.4e-21	73.2	23.1	0.00026	20.9	0.1	8.2	8	1	1	9	9	9	5	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|384433130|ref|YP_005642488.1|	-	3.2e-17	62.9	1.6	0.00022	21.8	0.1	4.2	3	1	1	4	4	4	3	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|384433130|ref|YP_005642488.1|	-	2e-15	56.8	13.6	8.7e-05	22.7	0.0	4.2	2	1	2	4	4	4	4	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_11	PF13414.6	gi|384433130|ref|YP_005642488.1|	-	4.1e-14	52.0	14.7	3.6e-05	23.4	3.2	6.2	6	1	0	6	6	5	3	TPR	repeat
TPR_17	PF13431.6	gi|384433130|ref|YP_005642488.1|	-	8e-14	50.9	13.8	0.0044	17.3	0.1	6.7	7	0	0	7	7	7	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|384433130|ref|YP_005642488.1|	-	1.2e-11	43.8	25.3	0.0054	16.8	0.0	7.8	8	1	0	8	8	8	3	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|384433130|ref|YP_005642488.1|	-	5.9e-11	42.2	2.1	0.14	13.0	0.0	5.6	4	2	3	7	7	6	3	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|384433130|ref|YP_005642488.1|	-	8.9e-11	41.1	29.3	0.0021	17.8	0.1	8.3	8	1	0	8	8	8	4	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|384433130|ref|YP_005642488.1|	-	2.8e-09	37.0	0.0	0.00082	19.5	0.0	4.1	2	1	3	5	5	5	2	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|384433130|ref|YP_005642488.1|	-	3.2e-08	33.8	14.2	0.00084	19.6	0.6	5.3	3	2	2	5	5	5	3	Tetratricopeptide	repeat
ChAPs	PF09295.10	gi|384433130|ref|YP_005642488.1|	-	5.5e-08	32.2	1.5	0.0028	16.7	0.0	2.2	1	1	1	2	2	2	2	ChAPs	(Chs5p-Arf1p-binding	proteins)
TPR_6	PF13174.6	gi|384433130|ref|YP_005642488.1|	-	9.9e-06	25.9	9.9	3.1	8.6	1.2	6.2	6	0	0	6	6	6	1	Tetratricopeptide	repeat
SRP_TPR_like	PF17004.5	gi|384433130|ref|YP_005642488.1|	-	1.2e-05	25.3	14.4	0.0026	17.8	0.2	3.9	1	1	2	4	4	4	2	Putative	TPR-like	repeat
NARP1	PF12569.8	gi|384433130|ref|YP_005642488.1|	-	2e-05	23.7	10.6	0.00064	18.7	0.5	3.6	1	1	3	4	4	4	3	NMDA	receptor-regulated	protein	1
TPR_15	PF13429.6	gi|384433130|ref|YP_005642488.1|	-	0.00021	20.6	2.6	0.56	9.4	0.1	3.1	1	1	2	3	3	3	2	Tetratricopeptide	repeat
BTAD	PF03704.17	gi|384433130|ref|YP_005642488.1|	-	0.00032	21.1	2.6	2.3	8.6	0.0	3.8	2	2	1	3	3	3	2	Bacterial	transcriptional	activator	domain
TPR_20	PF14561.6	gi|384433130|ref|YP_005642488.1|	-	0.00099	19.4	3.6	2.3	8.6	0.1	3.8	2	1	3	5	5	5	1	Tetratricopeptide	repeat
Coatomer_E	PF04733.14	gi|384433130|ref|YP_005642488.1|	-	0.0024	17.4	7.1	0.055	12.9	2.0	3.4	1	1	1	2	2	2	1	Coatomer	epsilon	subunit
HrpB1_HrpK	PF09613.10	gi|384433130|ref|YP_005642488.1|	-	0.0053	16.4	0.1	0.044	13.4	0.0	2.4	3	0	0	3	3	3	1	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
TPR_4	PF07721.14	gi|384433130|ref|YP_005642488.1|	-	0.012	16.2	0.1	19	6.2	0.1	3.3	4	0	0	4	4	3	0	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|384433130|ref|YP_005642488.1|	-	0.034	14.2	7.6	78	3.7	0.0	5.8	6	0	0	6	6	6	0	Tetratricopeptide	repeat
TPR_MalT	PF17874.1	gi|384433130|ref|YP_005642488.1|	-	0.04	13.3	0.4	2.1	7.7	0.1	3.2	2	1	0	2	2	2	0	MalT-like	TPR	region
Fis1_TPR_C	PF14853.6	gi|384433130|ref|YP_005642488.1|	-	0.084	13.0	14.4	0.56	10.3	3.5	4.2	3	1	2	5	5	4	0	Fis1	C-terminal	tetratricopeptide	repeat
MIT	PF04212.18	gi|384433130|ref|YP_005642488.1|	-	0.3	11.2	12.4	0.9	9.7	0.5	5.0	3	2	1	4	4	4	0	MIT	(microtubule	interacting	and	transport)	domain
DUF3856	PF12968.7	gi|384433130|ref|YP_005642488.1|	-	0.39	10.8	3.6	1.9	8.5	0.1	3.5	3	2	1	4	4	4	0	Domain	of	Unknown	Function	(DUF3856)
SusD_RagB	PF07980.11	gi|384433130|ref|YP_005642488.1|	-	0.72	9.4	3.1	0.27	10.8	0.2	1.7	2	0	0	2	2	1	0	SusD	family
NrfD	PF03916.14	gi|384433131|ref|YP_005642489.1|	-	5.7e-11	42.6	31.8	1.4e-09	38.0	26.1	2.4	2	1	0	2	2	2	2	Polysulphide	reductase,	NrfD
TrmB	PF01978.19	gi|384433132|ref|YP_005642490.1|	-	5.4e-05	23.0	0.0	0.0001	22.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4571	PF15137.6	gi|384433132|ref|YP_005642490.1|	-	0.094	12.3	0.2	0.13	11.9	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4571)
ADH_N	PF08240.12	gi|384433134|ref|YP_005642492.1|	-	7.4e-27	93.4	0.7	1.4e-26	92.5	0.7	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384433134|ref|YP_005642492.1|	-	2e-23	82.8	1.1	2.8e-23	82.3	0.1	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384433134|ref|YP_005642492.1|	-	1.7e-08	35.6	0.0	2.8e-08	34.9	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
PALP	PF00291.25	gi|384433134|ref|YP_005642492.1|	-	0.0025	17.3	0.0	0.0039	16.6	0.0	1.3	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Pyr_redox	PF00070.27	gi|384433134|ref|YP_005642492.1|	-	0.015	15.8	0.2	1.5	9.4	0.2	2.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
RmlD_sub_bind	PF04321.17	gi|384433134|ref|YP_005642492.1|	-	0.018	14.2	0.0	0.03	13.4	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
SIS_2	PF13580.6	gi|384433134|ref|YP_005642492.1|	-	0.17	11.9	0.0	0.51	10.4	0.0	1.8	2	0	0	2	2	2	0	SIS	domain
EB_dh	PF09459.10	gi|384433135|ref|YP_005642493.1|	-	4.6e-31	108.7	0.3	7.4e-31	108.0	0.3	1.3	1	0	0	1	1	1	1	Ethylbenzene	dehydrogenase
RIFIN	PF02009.16	gi|384433135|ref|YP_005642493.1|	-	0.022	14.7	4.1	0.03	14.2	4.1	1.1	1	0	0	1	1	1	0	Rifin
Stevor	PF17410.2	gi|384433135|ref|YP_005642493.1|	-	0.84	9.1	3.1	1.2	8.7	3.1	1.2	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
Rieske	PF00355.26	gi|384433137|ref|YP_005642495.1|	-	3.4e-08	33.3	0.1	2.5e-07	30.5	0.1	2.0	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Cytochrom_B_N_2	PF13631.6	gi|384433138|ref|YP_005642496.1|	-	8.9e-57	191.8	6.4	8.9e-57	191.8	6.4	4.0	3	2	1	4	4	4	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|384433138|ref|YP_005642496.1|	-	4.4e-23	82.1	13.9	4.4e-23	82.1	13.9	2.1	2	0	0	2	2	2	1	Cytochrome	b/b6/petB
DUF4079	PF13301.6	gi|384433138|ref|YP_005642496.1|	-	0.24	11.5	11.4	0.078	13.1	2.1	3.6	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF4079)
DUF2407_C	PF13373.6	gi|384433138|ref|YP_005642496.1|	-	0.34	11.1	0.9	2	8.6	0.2	2.4	2	0	0	2	2	2	0	DUF2407	C-terminal	domain
ABM	PF03992.16	gi|384433139|ref|YP_005642497.1|	-	8.8e-16	57.8	0.0	1e-15	57.6	0.0	1.1	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
SOR	PF07682.11	gi|384433139|ref|YP_005642497.1|	-	0.0023	16.9	0.0	0.051	12.5	0.0	1.9	1	1	1	2	2	2	2	Sulphur	oxygenase	reductase
DUF3291	PF11695.8	gi|384433139|ref|YP_005642497.1|	-	0.03	14.0	0.0	0.036	13.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3291)
HMA	PF00403.26	gi|384433140|ref|YP_005642498.1|	-	4.3e-10	39.9	0.7	3.3e-09	37.0	0.7	2.0	1	1	0	1	1	1	1	Heavy-metal-associated	domain
NodS	PF05401.11	gi|384433142|ref|YP_005642500.1|	-	0.097	12.3	0.0	0.11	12.1	0.0	1.1	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
AMP-binding	PF00501.28	gi|384433143|ref|YP_005642501.1|	-	4.3e-77	259.5	0.0	5.2e-77	259.2	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384433143|ref|YP_005642501.1|	-	2.5e-17	63.6	0.0	5.3e-17	62.6	0.0	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
FmdA_AmdA	PF03069.15	gi|384433144|ref|YP_005642502.1|	-	6.7e-72	242.4	0.0	5.6e-44	150.5	0.1	2.0	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
OrfB_Zn_ribbon	PF07282.11	gi|384433145|ref|YP_005642503.1|	-	9.7e-27	92.7	0.1	1.8e-26	91.9	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384433145|ref|YP_005642503.1|	-	1.8e-15	57.2	0.3	7.8e-15	55.2	0.0	2.0	2	0	0	2	2	2	1	Probable	transposase
zf-ribbon_3	PF13248.6	gi|384433145|ref|YP_005642503.1|	-	0.014	14.8	1.3	0.16	11.4	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384433145|ref|YP_005642503.1|	-	0.016	14.7	0.1	4.7	6.8	0.0	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF1610	PF07754.11	gi|384433145|ref|YP_005642503.1|	-	0.33	11.0	2.3	0.88	9.6	2.3	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
Synapsin_N	PF10581.9	gi|384433145|ref|YP_005642503.1|	-	0.42	10.6	2.5	1.8	8.6	0.6	2.4	2	0	0	2	2	2	0	Synapsin	N-terminal
zinc_ribbon_2	PF13240.6	gi|384433145|ref|YP_005642503.1|	-	0.99	9.2	3.1	13	5.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|384433145|ref|YP_005642503.1|	-	1.2	9.1	3.4	4.5	7.3	0.3	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
DUF2897	PF11446.8	gi|384433146|ref|YP_005642504.1|	-	1.3	9.0	6.6	3	7.8	6.6	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2897)
Acetyltransf_1	PF00583.25	gi|384433147|ref|YP_005642505.1|	-	2.4e-13	50.3	0.0	3.2e-13	49.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|384433147|ref|YP_005642505.1|	-	3.4e-11	43.2	0.0	4.3e-11	42.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|384433147|ref|YP_005642505.1|	-	1.9e-08	35.0	0.0	2.4e-08	34.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|384433147|ref|YP_005642505.1|	-	7.4e-08	32.7	0.1	1.6e-07	31.6	0.1	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|384433147|ref|YP_005642505.1|	-	6.7e-05	22.8	0.0	0.00017	21.5	0.0	1.6	1	1	1	2	2	2	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|384433147|ref|YP_005642505.1|	-	0.001	19.1	0.5	0.047	13.8	0.3	2.8	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|384433147|ref|YP_005642505.1|	-	0.0044	17.2	0.1	0.0068	16.6	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|384433147|ref|YP_005642505.1|	-	0.021	15.0	0.0	0.045	13.9	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF4821	PF16092.5	gi|384433147|ref|YP_005642505.1|	-	0.042	13.5	0.1	0.056	13.1	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4821)
Acetyltransf_CG	PF14542.6	gi|384433147|ref|YP_005642505.1|	-	0.081	13.1	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
POR_N	PF01855.19	gi|384433149|ref|YP_005642507.1|	-	8.5e-64	215.5	0.2	1.4e-63	214.8	0.2	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|384433149|ref|YP_005642507.1|	-	6.6e-32	111.0	0.9	7.2e-31	107.6	0.8	2.4	2	0	0	2	2	2	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|384433149|ref|YP_005642507.1|	-	1.3e-09	38.3	0.0	8.5e-09	35.7	0.0	2.5	3	0	0	3	3	3	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|384433149|ref|YP_005642507.1|	-	1.4e-07	31.4	0.0	1e-06	28.6	0.0	2.4	3	0	0	3	3	3	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|384433149|ref|YP_005642507.1|	-	7e-05	22.5	0.6	0.00024	20.8	0.3	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TFIIE_beta	PF02186.15	gi|384433149|ref|YP_005642507.1|	-	0.094	13.0	0.2	1.3	9.3	0.1	2.6	2	0	0	2	2	2	0	TFIIE	beta	subunit	core	domain
TPP_enzyme_C	PF02775.21	gi|384433150|ref|YP_005642508.1|	-	5e-31	107.5	0.1	8.9e-31	106.8	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|384433150|ref|YP_005642508.1|	-	6.6e-25	87.0	0.6	1.8e-24	85.6	0.2	1.9	2	0	0	2	2	2	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
ETF	PF01012.21	gi|384433151|ref|YP_005642509.1|	-	7.1e-89	296.5	0.1	3.5e-46	157.4	0.5	2.2	2	0	0	2	2	2	2	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|384433151|ref|YP_005642509.1|	-	6e-33	112.7	0.3	1.5e-32	111.4	0.3	1.7	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
GatB_Yqey	PF02637.18	gi|384433151|ref|YP_005642509.1|	-	0.0091	15.9	0.0	0.026	14.4	0.0	1.7	1	1	0	1	1	1	1	GatB	domain
DAO	PF01266.24	gi|384433152|ref|YP_005642510.1|	-	2.2e-15	57.1	1.8	9.7e-07	28.7	0.3	2.5	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|384433152|ref|YP_005642510.1|	-	1.2e-11	44.5	1.5	3.7e-11	42.8	1.5	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384433152|ref|YP_005642510.1|	-	1.2e-11	44.0	2.7	1.4e-07	30.5	0.6	2.4	2	0	0	2	2	2	2	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384433152|ref|YP_005642510.1|	-	1.2e-10	41.3	0.3	1.8e-10	40.8	0.3	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|384433152|ref|YP_005642510.1|	-	3.9e-09	36.1	0.3	3.9e-09	36.1	0.3	1.7	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|384433152|ref|YP_005642510.1|	-	1.2e-08	34.6	1.5	0.0015	17.8	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|384433152|ref|YP_005642510.1|	-	2.7e-07	30.0	1.3	2.7e-07	30.0	1.3	1.8	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|384433152|ref|YP_005642510.1|	-	1.6e-06	27.7	3.2	0.0003	20.1	2.5	2.9	2	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|384433152|ref|YP_005642510.1|	-	5.1e-06	26.6	0.2	1.1e-05	25.5	0.2	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|384433152|ref|YP_005642510.1|	-	1.9e-05	23.9	0.7	4.2e-05	22.8	0.7	1.6	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|384433152|ref|YP_005642510.1|	-	3.2e-05	24.4	1.1	0.011	16.2	0.2	2.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|384433152|ref|YP_005642510.1|	-	9.1e-05	21.8	0.2	0.00017	20.9	0.2	1.4	1	0	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|384433152|ref|YP_005642510.1|	-	0.001	18.4	0.0	0.0023	17.3	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|384433152|ref|YP_005642510.1|	-	0.0035	17.3	1.8	0.083	12.9	0.1	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|384433152|ref|YP_005642510.1|	-	0.0057	16.0	0.3	0.013	14.9	0.0	1.6	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
3HCDH_N	PF02737.18	gi|384433152|ref|YP_005642510.1|	-	0.05	13.5	0.3	0.098	12.5	0.3	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ETF_QO	PF05187.13	gi|384433153|ref|YP_005642511.1|	-	3e-12	46.6	1.3	3.6e-12	46.3	1.3	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_7	PF12838.7	gi|384433153|ref|YP_005642511.1|	-	4.5e-09	36.8	5.5	0.00025	21.6	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384433153|ref|YP_005642511.1|	-	5e-09	35.7	12.9	6.7e-05	22.7	2.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|384433153|ref|YP_005642511.1|	-	3.1e-08	33.6	10.8	6.8e-08	32.5	10.9	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384433153|ref|YP_005642511.1|	-	8e-08	32.2	9.9	5.2e-05	23.4	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|384433153|ref|YP_005642511.1|	-	2.1e-07	30.4	18.0	1.8e-05	24.4	4.2	3.2	3	0	0	3	3	3	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384433153|ref|YP_005642511.1|	-	2.3e-07	30.9	9.4	9.5e-07	28.9	10.0	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433153|ref|YP_005642511.1|	-	3.4e-06	26.9	17.8	0.00086	19.3	2.6	2.8	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|384433153|ref|YP_005642511.1|	-	7.7e-05	23.1	4.4	0.0022	18.4	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384433153|ref|YP_005642511.1|	-	0.0024	17.9	14.1	0.023	14.8	14.1	2.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384433153|ref|YP_005642511.1|	-	0.0033	18.2	11.9	0.12	13.4	3.4	2.4	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|384433153|ref|YP_005642511.1|	-	0.0062	17.4	10.9	0.01	16.8	0.9	2.7	2	1	1	3	3	3	1	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|384433153|ref|YP_005642511.1|	-	0.11	13.0	11.7	1.8	9.2	11.9	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
PPDK_N	PF01326.19	gi|384433154|ref|YP_005642512.1|	-	4.6e-73	246.3	0.3	5.5e-73	246.1	0.3	1.0	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
FdhD-NarQ	PF02634.15	gi|384433155|ref|YP_005642513.1|	-	5e-71	239.1	0.0	5.6e-71	239.0	0.0	1.0	1	0	0	1	1	1	1	FdhD/NarQ	family
LAL_C2	PF18603.1	gi|384433155|ref|YP_005642513.1|	-	0.021	15.0	0.0	0.04	14.1	0.0	1.5	1	0	0	1	1	1	0	L-amino	acid	ligase	C-terminal	domain	2
DUF1641	PF07849.11	gi|384433156|ref|YP_005642514.1|	-	3.8e-14	52.3	0.1	6.8e-14	51.5	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Molybdopterin	PF00384.22	gi|384433157|ref|YP_005642515.1|	-	7.1e-89	298.7	0.0	9.4e-89	298.3	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|384433157|ref|YP_005642515.1|	-	1.2e-20	73.6	0.0	3.3e-20	72.2	0.0	1.8	2	0	0	2	2	2	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|384433157|ref|YP_005642515.1|	-	8.9e-18	64.0	0.1	8.9e-18	64.0	0.1	2.2	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer2_4	PF13510.6	gi|384433157|ref|YP_005642515.1|	-	1.4e-16	60.3	0.0	3.1e-16	59.2	0.0	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4	PF00037.27	gi|384433157|ref|YP_005642515.1|	-	4.3e-11	42.1	19.3	4.4e-06	26.3	3.5	3.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|384433157|ref|YP_005642515.1|	-	5.5e-09	36.0	7.5	0.0002	21.4	2.2	2.9	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384433157|ref|YP_005642515.1|	-	1.5e-08	34.6	6.5	1.5e-08	34.6	6.5	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|384433157|ref|YP_005642515.1|	-	4.2e-08	32.6	0.6	4.2e-08	32.6	0.6	2.1	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer2	PF00111.27	gi|384433157|ref|YP_005642515.1|	-	6.9e-07	29.1	3.8	1.3e-06	28.3	0.2	2.6	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_6	PF12837.7	gi|384433157|ref|YP_005642515.1|	-	1.6e-06	27.9	20.1	0.00027	20.9	3.3	3.1	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|384433157|ref|YP_005642515.1|	-	1.4e-05	25.6	11.9	1.4e-05	25.6	11.9	3.3	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384433157|ref|YP_005642515.1|	-	0.00017	21.7	12.7	0.00017	21.7	12.7	3.6	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384433157|ref|YP_005642515.1|	-	0.0031	18.4	18.5	0.024	15.6	5.2	3.9	3	1	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|384433157|ref|YP_005642515.1|	-	0.0053	16.8	15.0	0.0084	16.2	5.8	3.6	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|384433157|ref|YP_005642515.1|	-	0.0074	16.8	6.8	0.6	10.7	0.2	2.8	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|384433157|ref|YP_005642515.1|	-	0.0082	16.6	11.2	0.0082	16.6	11.2	2.9	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384433157|ref|YP_005642515.1|	-	0.053	13.7	12.5	0.062	13.5	0.6	3.0	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|384433157|ref|YP_005642515.1|	-	0.058	14.1	5.3	0.94	10.3	1.5	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.6	gi|384433157|ref|YP_005642515.1|	-	0.23	12.0	18.7	0.77	10.3	2.6	3.1	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384433157|ref|YP_005642515.1|	-	3.3	8.9	30.6	0.067	14.2	7.8	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Oxidored_molyb	PF00174.19	gi|384433159|ref|YP_005642517.1|	-	2.2e-36	125.1	0.1	4.3e-36	124.1	0.1	1.4	1	1	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
HTH_45	PF14947.6	gi|384433160|ref|YP_005642518.1|	-	2.4e-17	62.7	0.8	4.1e-17	61.9	0.8	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|384433160|ref|YP_005642518.1|	-	1.3e-06	28.2	0.2	1.6e-06	27.9	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
PadR	PF03551.14	gi|384433160|ref|YP_005642518.1|	-	0.018	15.0	0.3	0.055	13.4	0.1	1.9	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
Nop52	PF05997.12	gi|384433160|ref|YP_005642518.1|	-	0.036	13.9	0.0	0.039	13.7	0.0	1.1	1	0	0	1	1	1	0	Nucleolar	protein,Nop52
DUF1495	PF07381.11	gi|384433160|ref|YP_005642518.1|	-	0.078	12.8	0.1	0.11	12.3	0.1	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF3211	PF11485.8	gi|384433161|ref|YP_005642519.1|	-	2.9e-40	137.6	1.2	3.3e-40	137.5	1.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
MS_channel	PF00924.18	gi|384433162|ref|YP_005642520.1|	-	3.9e-18	65.7	9.8	3.9e-18	65.7	9.8	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
AAA	PF00004.29	gi|384433164|ref|YP_005642522.1|	-	5.3e-75	250.2	0.0	9.4e-37	126.4	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|384433164|ref|YP_005642522.1|	-	2.1e-14	54.2	0.0	5.1e-06	27.0	0.0	2.9	2	1	0	2	2	2	2	AAA	domain
RuvB_N	PF05496.12	gi|384433164|ref|YP_005642522.1|	-	4.1e-14	52.6	0.0	2.1e-06	27.6	0.0	3.0	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|384433164|ref|YP_005642522.1|	-	2.5e-13	50.2	3.7	7.3e-06	26.0	0.4	4.2	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|384433164|ref|YP_005642522.1|	-	1.8e-12	47.7	7.6	0.0018	18.5	0.0	4.9	2	2	3	5	5	4	3	AAA	domain
AAA_lid_3	PF17862.1	gi|384433164|ref|YP_005642522.1|	-	4.5e-12	45.6	0.0	4.6e-06	26.3	0.0	2.7	2	0	0	2	2	2	2	AAA+	lid	domain
AAA_33	PF13671.6	gi|384433164|ref|YP_005642522.1|	-	1.7e-11	44.4	0.0	7.8e-06	26.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|384433164|ref|YP_005642522.1|	-	1.8e-11	44.2	0.0	3.9e-05	23.7	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|384433164|ref|YP_005642522.1|	-	4.6e-11	43.4	3.0	0.0028	18.1	0.0	4.2	2	2	1	4	4	4	2	AAA	ATPase	domain
TIP49	PF06068.13	gi|384433164|ref|YP_005642522.1|	-	3.9e-10	39.5	0.1	0.00039	19.8	0.0	2.7	3	0	0	3	3	3	2	TIP49	P-loop	domain
AAA_28	PF13521.6	gi|384433164|ref|YP_005642522.1|	-	1e-09	38.9	0.3	0.00089	19.5	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
RNA_helicase	PF00910.22	gi|384433164|ref|YP_005642522.1|	-	1.3e-09	38.3	0.0	0.0014	19.0	0.0	3.0	3	0	0	3	3	2	2	RNA	helicase
AAA_24	PF13479.6	gi|384433164|ref|YP_005642522.1|	-	4.1e-09	36.4	0.1	0.0053	16.5	0.1	3.5	2	1	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|384433164|ref|YP_005642522.1|	-	7.5e-09	35.6	0.5	0.0032	17.2	0.0	3.6	3	1	0	4	4	4	2	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|384433164|ref|YP_005642522.1|	-	7.7e-09	35.3	0.0	0.002	17.7	0.0	3.5	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Sigma54_activ_2	PF14532.6	gi|384433164|ref|YP_005642522.1|	-	7.8e-09	35.8	0.0	2.4e-05	24.5	0.0	2.6	2	0	0	2	2	2	2	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|384433164|ref|YP_005642522.1|	-	1.3e-08	34.3	0.0	0.004	16.3	0.0	2.5	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_2	PF07724.14	gi|384433164|ref|YP_005642522.1|	-	2.8e-08	34.1	0.0	0.00072	19.7	0.0	3.1	2	1	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
Cytidylate_kin	PF02224.18	gi|384433164|ref|YP_005642522.1|	-	3.3e-08	33.5	0.1	0.0049	16.6	0.0	2.8	3	0	0	3	3	2	2	Cytidylate	kinase
SKI	PF01202.22	gi|384433164|ref|YP_005642522.1|	-	1.3e-07	31.9	0.0	0.02	15.0	0.0	2.8	2	0	0	2	2	2	2	Shikimate	kinase
Sigma54_activat	PF00158.26	gi|384433164|ref|YP_005642522.1|	-	1.4e-07	31.4	0.2	0.56	9.9	0.0	3.7	4	0	0	4	4	3	2	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|384433164|ref|YP_005642522.1|	-	2.2e-07	30.5	0.0	0.014	14.8	0.0	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
TsaE	PF02367.17	gi|384433164|ref|YP_005642522.1|	-	3.1e-07	30.4	0.0	0.02	14.9	0.0	2.5	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_17	PF13207.6	gi|384433164|ref|YP_005642522.1|	-	8.4e-07	29.5	1.1	0.055	13.9	0.0	3.5	5	0	0	5	5	2	2	AAA	domain
Zeta_toxin	PF06414.12	gi|384433164|ref|YP_005642522.1|	-	1.1e-06	28.1	0.1	0.37	10.0	0.0	3.2	3	0	0	3	3	3	2	Zeta	toxin
Rad17	PF03215.15	gi|384433164|ref|YP_005642522.1|	-	3.5e-06	27.1	1.0	0.11	12.4	0.0	4.1	3	2	1	4	4	4	2	Rad17	P-loop	domain
ATPase_2	PF01637.18	gi|384433164|ref|YP_005642522.1|	-	4.5e-06	26.8	2.3	0.032	14.1	0.3	4.1	3	2	0	3	3	3	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|384433164|ref|YP_005642522.1|	-	7.8e-06	25.4	1.1	0.016	14.6	0.0	3.8	4	0	0	4	4	4	1	Bacterial	TniB	protein
Parvo_NS1	PF01057.17	gi|384433164|ref|YP_005642522.1|	-	1.1e-05	24.7	0.3	0.059	12.4	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_30	PF13604.6	gi|384433164|ref|YP_005642522.1|	-	1.1e-05	25.2	1.8	0.083	12.6	0.2	3.8	3	1	1	4	4	4	2	AAA	domain
AAA_25	PF13481.6	gi|384433164|ref|YP_005642522.1|	-	1.4e-05	24.7	2.1	0.13	11.8	0.0	3.7	4	0	0	4	4	4	2	AAA	domain
NB-ARC	PF00931.22	gi|384433164|ref|YP_005642522.1|	-	1.7e-05	24.2	0.0	0.19	10.9	0.0	4.2	4	0	0	4	4	4	1	NB-ARC	domain
ABC_tran	PF00005.27	gi|384433164|ref|YP_005642522.1|	-	2e-05	25.1	0.2	0.16	12.5	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
Vps4_C	PF09336.10	gi|384433164|ref|YP_005642522.1|	-	2.3e-05	24.3	0.9	0.14	12.2	0.0	3.2	3	0	0	3	3	2	2	Vps4	C	terminal	oligomerisation	domain
AAA_19	PF13245.6	gi|384433164|ref|YP_005642522.1|	-	5.9e-05	23.4	3.7	0.22	11.9	0.0	3.8	4	0	0	4	4	4	2	AAA	domain
Cytidylate_kin2	PF13189.6	gi|384433164|ref|YP_005642522.1|	-	7.8e-05	22.9	0.0	0.1	12.7	0.0	2.8	3	0	0	3	3	2	1	Cytidylate	kinase-like	family
AAA_3	PF07726.11	gi|384433164|ref|YP_005642522.1|	-	9.3e-05	22.3	0.0	0.65	9.9	0.0	2.6	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.6	gi|384433164|ref|YP_005642522.1|	-	9.7e-05	22.3	0.0	0.55	10.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Bac_DnaA	PF00308.18	gi|384433164|ref|YP_005642522.1|	-	0.00017	21.5	0.1	1.1	9.1	0.0	3.2	2	2	0	2	2	2	1	Bacterial	dnaA	protein
NTPase_1	PF03266.15	gi|384433164|ref|YP_005642522.1|	-	0.0002	21.3	0.4	0.37	10.7	0.0	3.2	3	0	0	3	3	3	1	NTPase
KTI12	PF08433.10	gi|384433164|ref|YP_005642522.1|	-	0.00028	20.4	0.1	0.28	10.6	0.0	2.8	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
NACHT	PF05729.12	gi|384433164|ref|YP_005642522.1|	-	0.0003	20.7	1.2	0.83	9.6	0.1	3.2	3	1	1	4	4	3	2	NACHT	domain
PhoH	PF02562.16	gi|384433164|ref|YP_005642522.1|	-	0.00043	19.8	1.2	0.43	10.0	0.1	3.0	3	0	0	3	3	2	1	PhoH-like	protein
RsgA_GTPase	PF03193.16	gi|384433164|ref|YP_005642522.1|	-	0.00095	19.1	0.0	1.2	9.0	0.0	2.9	3	0	0	3	3	2	1	RsgA	GTPase
AAA_6	PF12774.7	gi|384433164|ref|YP_005642522.1|	-	0.0014	17.7	0.0	0.81	8.6	0.0	2.5	2	0	0	2	2	2	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
dNK	PF01712.19	gi|384433164|ref|YP_005642522.1|	-	0.0015	18.4	0.0	0.34	10.7	0.0	2.6	2	0	0	2	2	2	1	Deoxynucleoside	kinase
PduV-EutP	PF10662.9	gi|384433164|ref|YP_005642522.1|	-	0.0015	18.3	0.0	1.7	8.4	0.0	2.5	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
IPT	PF01745.16	gi|384433164|ref|YP_005642522.1|	-	0.0031	17.0	0.0	1.8	7.9	0.0	2.4	2	0	0	2	2	2	1	Isopentenyl	transferase
AAA_23	PF13476.6	gi|384433164|ref|YP_005642522.1|	-	0.0035	17.9	4.0	1.3	9.5	0.0	3.3	2	1	1	3	3	2	1	AAA	domain
T2SSE	PF00437.20	gi|384433164|ref|YP_005642522.1|	-	0.0036	16.4	0.0	0.3	10.1	0.0	2.6	3	0	0	3	3	2	1	Type	II/IV	secretion	system	protein
CPT	PF07931.12	gi|384433164|ref|YP_005642522.1|	-	0.0037	17.1	0.0	2.3	8.0	0.0	2.4	2	0	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
AAA_29	PF13555.6	gi|384433164|ref|YP_005642522.1|	-	0.0038	16.9	0.1	3.9	7.3	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
KAP_NTPase	PF07693.14	gi|384433164|ref|YP_005642522.1|	-	0.0049	16.2	2.9	0.34	10.1	0.2	3.4	2	2	1	4	4	4	1	KAP	family	P-loop	domain
MMR_HSR1	PF01926.23	gi|384433164|ref|YP_005642522.1|	-	0.0051	16.9	1.0	2.7	8.1	0.0	3.1	3	0	0	3	3	2	0	50S	ribosome-binding	GTPase
6PF2K	PF01591.18	gi|384433164|ref|YP_005642522.1|	-	0.0054	16.1	0.8	1.1	8.5	0.0	3.5	4	0	0	4	4	3	1	6-phosphofructo-2-kinase
ADK	PF00406.22	gi|384433164|ref|YP_005642522.1|	-	0.0074	16.4	0.0	2.4	8.2	0.0	2.9	2	0	0	2	2	2	1	Adenylate	kinase
Hydin_ADK	PF17213.3	gi|384433164|ref|YP_005642522.1|	-	0.0078	16.5	0.0	1.6	9.0	0.0	2.3	2	0	0	2	2	2	1	Hydin	Adenylate	kinase-like	domain
APS_kinase	PF01583.20	gi|384433164|ref|YP_005642522.1|	-	0.01	15.7	0.0	3.9	7.3	0.0	2.5	2	0	0	2	2	2	0	Adenylylsulphate	kinase
MCM	PF00493.23	gi|384433164|ref|YP_005642522.1|	-	0.01	14.9	0.0	12	4.9	0.0	3.3	3	1	0	3	3	3	0	MCM	P-loop	domain
DUF2075	PF09848.9	gi|384433164|ref|YP_005642522.1|	-	0.011	15.0	0.1	3.3	6.9	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
SRP54	PF00448.22	gi|384433164|ref|YP_005642522.1|	-	0.017	14.7	0.5	3.8	7.1	0.1	2.7	3	0	0	3	3	2	0	SRP54-type	protein,	GTPase	domain
Roc	PF08477.13	gi|384433164|ref|YP_005642522.1|	-	0.023	14.9	0.4	13	6.1	0.0	3.1	4	0	0	4	4	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Guanylate_kin	PF00625.21	gi|384433164|ref|YP_005642522.1|	-	0.034	13.9	0.0	7.9	6.1	0.0	2.9	2	0	0	2	2	2	0	Guanylate	kinase
Viral_helicase1	PF01443.18	gi|384433164|ref|YP_005642522.1|	-	0.04	13.6	0.0	2.1	8.0	0.0	2.5	3	0	0	3	3	2	0	Viral	(Superfamily	1)	RNA	helicase
ATPase	PF06745.13	gi|384433164|ref|YP_005642522.1|	-	0.044	13.1	10.9	3.2	7.0	0.1	4.6	4	1	1	5	5	5	0	KaiC
ResIII	PF04851.15	gi|384433164|ref|YP_005642522.1|	-	0.055	13.5	0.3	17	5.4	0.0	3.1	3	0	0	3	3	2	0	Type	III	restriction	enzyme,	res	subunit
CLP1_P	PF16575.5	gi|384433164|ref|YP_005642522.1|	-	0.08	12.7	0.1	9.3	6.0	0.0	2.7	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DEAD	PF00270.29	gi|384433164|ref|YP_005642522.1|	-	0.13	12.0	1.9	30	4.3	0.0	3.8	4	0	0	4	4	4	0	DEAD/DEAH	box	helicase
SMC_N	PF02463.19	gi|384433164|ref|YP_005642522.1|	-	0.17	11.3	0.2	10	5.5	0.0	2.7	3	0	0	3	3	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|384433164|ref|YP_005642522.1|	-	6.3	6.5	13.0	3.1	7.5	0.1	4.1	3	2	2	5	5	5	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Creatininase	PF02633.14	gi|384433165|ref|YP_005642523.1|	-	3.4e-52	177.3	0.0	3.7e-52	177.2	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
SBP_bac_1	PF01547.25	gi|384433167|ref|YP_005642525.1|	-	1.4e-11	44.9	10.8	1.4e-11	44.9	10.8	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Pilin_N	PF07790.11	gi|384433167|ref|YP_005642525.1|	-	0.0053	17.7	3.8	0.012	16.6	3.8	1.6	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
TcpE	PF12648.7	gi|384433167|ref|YP_005642525.1|	-	0.34	11.5	2.2	0.89	10.1	1.3	2.1	2	0	0	2	2	2	0	TcpE	family
B277	PF17623.2	gi|384433167|ref|YP_005642525.1|	-	0.77	8.8	8.7	1.2	8.2	8.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function
DUF3149	PF11346.8	gi|384433167|ref|YP_005642525.1|	-	1.2	8.8	5.8	2.4	7.8	5.8	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3149)
BPD_transp_1	PF00528.22	gi|384433168|ref|YP_005642526.1|	-	7.8e-15	55.1	26.2	7.8e-15	55.1	26.2	2.1	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384433169|ref|YP_005642527.1|	-	2.7e-14	53.4	28.7	2.7e-14	53.4	28.7	2.7	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|384433170|ref|YP_005642528.1|	-	7.9e-33	113.9	0.0	1.6e-32	112.9	0.0	1.5	2	0	0	2	2	1	1	ABC	transporter
GlcV_C_terminal	PF17847.1	gi|384433170|ref|YP_005642528.1|	-	9.4e-30	102.9	2.4	1.2e-29	102.5	0.3	2.2	2	1	0	2	2	2	1	Glucose	ABC	transporter	C-terminal	domain
AAA_21	PF13304.6	gi|384433170|ref|YP_005642528.1|	-	1.1e-09	38.5	0.5	4e-05	23.6	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|384433170|ref|YP_005642528.1|	-	5.4e-07	30.1	0.0	5.4e-06	26.9	0.0	2.5	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
TOBE_2	PF08402.10	gi|384433170|ref|YP_005642528.1|	-	0.00014	22.0	0.0	0.00041	20.5	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.19	gi|384433170|ref|YP_005642528.1|	-	0.0024	17.3	0.5	0.04	13.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.6	gi|384433170|ref|YP_005642528.1|	-	0.0027	17.9	0.4	0.015	15.5	0.4	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
OB_MalK	PF17912.1	gi|384433170|ref|YP_005642528.1|	-	0.012	16.4	0.1	0.061	14.2	0.1	2.3	1	0	0	1	1	1	0	MalK	OB	fold	domain
Cytidylate_kin	PF02224.18	gi|384433170|ref|YP_005642528.1|	-	0.026	14.2	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	Cytidylate	kinase
AAA_29	PF13555.6	gi|384433170|ref|YP_005642528.1|	-	0.045	13.5	0.0	0.097	12.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384433170|ref|YP_005642528.1|	-	0.059	13.9	1.2	0.059	13.9	1.2	1.5	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|384433170|ref|YP_005642528.1|	-	0.069	13.2	0.1	0.18	11.9	0.1	1.7	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|384433170|ref|YP_005642528.1|	-	0.12	12.1	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|384433170|ref|YP_005642528.1|	-	0.19	11.9	0.1	1.1	9.4	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
MFS_1	PF07690.16	gi|384433171|ref|YP_005642529.1|	-	7.3e-25	87.6	46.4	7.3e-25	87.6	46.4	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384433171|ref|YP_005642529.1|	-	4.7e-21	75.2	33.4	7.9e-17	61.2	9.7	2.2	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384433172|ref|YP_005642530.1|	-	7.5e-37	127.1	70.2	3e-29	102.0	42.3	1.7	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|384433172|ref|YP_005642530.1|	-	3.2e-07	29.1	4.6	3.2e-07	29.1	4.6	2.1	2	0	0	2	2	2	2	Transmembrane	secretion	effector
XRN_M	PF17846.1	gi|384433173|ref|YP_005642531.1|	-	0.25	10.3	0.4	0.31	9.9	0.4	1.1	1	0	0	1	1	1	0	Xrn1	helical	domain
DUF2179	PF10035.9	gi|384433174|ref|YP_005642532.1|	-	0.04	13.7	0.1	0.054	13.3	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2179)
DUF493	PF04359.14	gi|384433174|ref|YP_005642532.1|	-	0.058	14.0	0.0	0.07	13.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF493)
Bac_export_2	PF01312.19	gi|384433175|ref|YP_005642533.1|	-	9.3	5.3	8.3	9.9	5.3	8.3	1.1	1	0	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
SBP56	PF05694.11	gi|384433176|ref|YP_005642534.1|	-	1.3e-204	680.2	0.0	1.5e-204	680.0	0.0	1.0	1	0	0	1	1	1	1	56kDa	selenium	binding	protein	(SBP56)
Lactonase	PF10282.9	gi|384433176|ref|YP_005642534.1|	-	0.069	12.4	0.0	0.81	8.9	0.0	2.2	1	1	0	1	1	1	0	Lactonase,	7-bladed	beta-propeller
DUF1264	PF06884.11	gi|384433176|ref|YP_005642534.1|	-	0.15	11.7	0.0	0.27	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1264)
Rad54_N	PF08658.10	gi|384433176|ref|YP_005642534.1|	-	0.17	12.1	0.0	0.31	11.2	0.0	1.3	1	0	0	1	1	1	0	Rad54	N	terminal
4HBT	PF03061.22	gi|384433177|ref|YP_005642535.1|	-	4.6e-14	52.5	0.0	5.7e-14	52.2	0.0	1.1	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.6	gi|384433177|ref|YP_005642535.1|	-	0.0015	18.8	0.0	0.0017	18.7	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
AMP-binding	PF00501.28	gi|384433178|ref|YP_005642536.1|	-	2.1e-89	300.1	0.0	2.5e-89	299.8	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384433178|ref|YP_005642536.1|	-	5.9e-27	94.5	0.4	1.9e-26	92.8	0.1	2.1	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|384433178|ref|YP_005642536.1|	-	1.1e-20	73.3	2.5	2.4e-20	72.2	2.5	1.7	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
Gpr1_Fun34_YaaH	PF01184.19	gi|384433179|ref|YP_005642537.1|	-	1.3e-42	145.8	30.8	4.4e-42	144.0	30.8	1.7	1	1	0	1	1	1	1	GPR1/FUN34/yaaH	family
MIase	PF02426.16	gi|384433180|ref|YP_005642538.1|	-	5.8e-18	64.8	0.0	7.2e-18	64.5	0.0	1.0	1	0	0	1	1	1	1	Muconolactone	delta-isomerase
GYD	PF08734.11	gi|384433180|ref|YP_005642538.1|	-	0.021	14.8	0.0	0.021	14.7	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
COX15-CtaA	PF02628.15	gi|384433181|ref|YP_005642539.1|	-	0.02	14.0	10.3	0.33	10.0	6.7	2.1	1	1	1	2	2	2	0	Cytochrome	oxidase	assembly	protein
DrsE	PF02635.15	gi|384433182|ref|YP_005642540.1|	-	3.6e-05	24.1	0.1	5.3e-05	23.6	0.1	1.3	1	1	0	1	1	1	1	DsrE/DsrF-like	family
ThiP_synth	PF10120.9	gi|384433182|ref|YP_005642540.1|	-	0.012	15.2	0.0	0.015	14.9	0.0	1.1	1	0	0	1	1	1	0	Thiamine-phosphate	synthase
DUF1727	PF08353.10	gi|384433182|ref|YP_005642540.1|	-	0.071	13.0	0.0	0.1	12.5	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1727)
EamA	PF00892.20	gi|384433183|ref|YP_005642541.1|	-	1.2e-35	122.7	34.7	2.5e-22	79.5	12.6	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
malic	PF00390.19	gi|384433184|ref|YP_005642542.1|	-	2.8e-27	95.7	0.5	1.5e-24	86.8	0.5	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|384433184|ref|YP_005642542.1|	-	3.6e-23	82.2	0.2	2e-22	79.7	0.2	2.0	1	1	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384433184|ref|YP_005642542.1|	-	0.01	15.1	0.0	0.022	14.1	0.0	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Ldr_toxin	PF13940.6	gi|384433184|ref|YP_005642542.1|	-	0.091	12.8	0.4	0.22	11.6	0.4	1.6	1	0	0	1	1	1	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
Acetyltransf_1	PF00583.25	gi|384433185|ref|YP_005642543.1|	-	6.1e-20	71.6	0.0	7.3e-20	71.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|384433185|ref|YP_005642543.1|	-	9.9e-16	57.9	0.1	1.5e-15	57.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|384433185|ref|YP_005642543.1|	-	4.7e-15	55.7	0.0	5.8e-15	55.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|384433185|ref|YP_005642543.1|	-	2e-12	47.5	0.1	2.5e-12	47.2	0.1	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|384433185|ref|YP_005642543.1|	-	3.1e-10	40.2	0.0	5.5e-10	39.4	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|384433185|ref|YP_005642543.1|	-	2.8e-07	30.4	0.0	4.5e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|384433185|ref|YP_005642543.1|	-	9.1e-07	29.6	0.0	1.2e-06	29.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_15	PF17013.5	gi|384433185|ref|YP_005642543.1|	-	0.00021	20.9	0.2	0.025	14.0	0.0	2.1	2	0	0	2	2	2	1	Putative	acetyl-transferase
Acetyltransf_16	PF05301.11	gi|384433185|ref|YP_005642543.1|	-	0.00038	20.3	0.0	0.00082	19.2	0.0	1.7	1	1	0	2	2	2	1	GNAT	acetyltransferase,	Mec-17
Acetyltransf_CG	PF14542.6	gi|384433185|ref|YP_005642543.1|	-	0.0023	18.0	0.0	0.0052	16.9	0.0	1.6	2	0	0	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_6	PF13480.7	gi|384433185|ref|YP_005642543.1|	-	0.005	17.0	0.0	0.0087	16.2	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|384433185|ref|YP_005642543.1|	-	0.0085	15.8	0.0	0.012	15.3	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_13	PF13880.6	gi|384433185|ref|YP_005642543.1|	-	0.013	15.5	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
AstA	PF04958.12	gi|384433185|ref|YP_005642543.1|	-	0.019	13.6	0.1	0.079	11.5	0.1	1.8	2	0	0	2	2	2	0	Arginine	N-succinyltransferase	beta	subunit
RNA_pol_Rpb2_4	PF04566.13	gi|384433185|ref|YP_005642543.1|	-	0.049	13.9	0.2	0.49	10.7	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
DUF4821	PF16092.5	gi|384433185|ref|YP_005642543.1|	-	0.053	13.2	0.1	0.075	12.7	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4821)
3HCDH_N	PF02737.18	gi|384433186|ref|YP_005642544.1|	-	1.1e-63	214.4	0.1	1.6e-63	213.9	0.1	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|384433186|ref|YP_005642544.1|	-	1.1e-38	131.7	0.1	2.7e-29	101.6	0.1	2.6	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|384433186|ref|YP_005642544.1|	-	0.0003	21.0	0.1	0.0024	18.0	0.0	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_2	PF07992.14	gi|384433186|ref|YP_005642544.1|	-	0.044	13.0	0.0	0.066	12.4	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Herpes_BBRF1	PF04793.12	gi|384433186|ref|YP_005642544.1|	-	0.047	12.7	0.0	0.15	11.1	0.1	1.7	2	0	0	2	2	2	0	BRRF1-like	protein
AlaDh_PNT_C	PF01262.21	gi|384433186|ref|YP_005642544.1|	-	0.053	12.8	0.3	0.087	12.1	0.3	1.5	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384433186|ref|YP_005642544.1|	-	0.061	12.9	0.1	0.1	12.2	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DUF35_N	PF12172.8	gi|384433187|ref|YP_005642545.1|	-	9.4e-13	47.8	0.1	1.5e-12	47.1	0.1	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|384433187|ref|YP_005642545.1|	-	2.2e-12	46.8	0.4	3.1e-12	46.3	0.4	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
TackOD1	PF18551.1	gi|384433187|ref|YP_005642545.1|	-	0.0069	16.1	0.0	0.008	15.9	0.0	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zf-TFIIB	PF13453.6	gi|384433187|ref|YP_005642545.1|	-	0.0089	15.3	0.2	5.1	6.5	0.0	2.5	2	0	0	2	2	2	2	Transcription	factor	zinc-finger
Auto_anti-p27	PF06677.12	gi|384433187|ref|YP_005642545.1|	-	0.047	13.8	2.0	0.11	12.6	2.0	1.7	1	1	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
TrpBP	PF02081.15	gi|384433187|ref|YP_005642545.1|	-	0.1	12.5	0.1	0.17	11.8	0.1	1.3	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein
CxC5	PF18718.1	gi|384433187|ref|YP_005642545.1|	-	0.1	12.7	0.1	1.4	9.0	0.0	2.1	1	1	1	2	2	2	0	CxC5	like	cysteine	cluster	associated	with	KDZ	transposases
CpXC	PF14353.6	gi|384433187|ref|YP_005642545.1|	-	0.17	12.0	0.9	0.34	11.0	0.0	1.9	1	1	0	1	1	1	0	CpXC	protein
PhnA_Zn_Ribbon	PF08274.12	gi|384433187|ref|YP_005642545.1|	-	0.22	11.5	2.1	1.2	9.2	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.12	gi|384433187|ref|YP_005642545.1|	-	0.3	10.7	2.2	6.2	6.4	0.5	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.19	gi|384433187|ref|YP_005642545.1|	-	0.35	10.7	4.3	7.5	6.4	0.5	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ACC	PF17848.1	gi|384433187|ref|YP_005642545.1|	-	1.5	9.0	5.8	0.79	9.9	0.3	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
DUF1936	PF09151.10	gi|384433187|ref|YP_005642545.1|	-	1.5	8.8	5.8	9.3	6.3	0.2	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1936)
Zn-ribbon_8	PF09723.10	gi|384433187|ref|YP_005642545.1|	-	1.6	8.9	6.1	2.9	8.1	0.2	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|384433187|ref|YP_005642545.1|	-	3	7.4	7.6	34	4.0	7.7	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Thiolase_N	PF00108.23	gi|384433188|ref|YP_005642546.1|	-	9.7e-30	103.8	0.0	2e-29	102.7	0.0	1.6	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384433188|ref|YP_005642546.1|	-	1.6e-07	31.0	0.2	1.8e-06	27.6	0.1	2.5	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|384433188|ref|YP_005642546.1|	-	1.4e-06	28.1	0.9	1.4e-06	28.1	0.9	3.0	3	1	1	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|384433188|ref|YP_005642546.1|	-	6.2e-05	22.8	0.3	0.0052	16.6	0.1	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
SpoVAD	PF07451.11	gi|384433188|ref|YP_005642546.1|	-	0.033	12.9	0.0	0.074	11.7	0.0	1.5	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AD	(SpoVAD)
AMP-binding	PF00501.28	gi|384433189|ref|YP_005642547.1|	-	3.5e-89	299.3	0.0	4.1e-89	299.1	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384433189|ref|YP_005642547.1|	-	3e-17	63.4	0.0	5.3e-17	62.6	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Chalcone	PF02431.15	gi|384433189|ref|YP_005642547.1|	-	0.078	12.4	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Chalcone-flavanone	isomerase
SinI	PF08671.10	gi|384433189|ref|YP_005642547.1|	-	0.39	10.6	2.7	11	6.0	0.3	2.7	2	0	0	2	2	2	0	Anti-repressor	SinI
Acyl-CoA_dh_1	PF00441.24	gi|384433190|ref|YP_005642548.1|	-	4.4e-42	143.8	4.3	6.9e-42	143.2	4.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|384433190|ref|YP_005642548.1|	-	1.5e-33	115.8	0.1	4.5e-33	114.3	0.1	1.9	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|384433190|ref|YP_005642548.1|	-	4.2e-27	94.2	0.0	8.2e-27	93.3	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|384433190|ref|YP_005642548.1|	-	5.8e-21	75.2	2.6	1.1e-20	74.3	2.6	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.8	gi|384433190|ref|YP_005642548.1|	-	0.0029	17.3	0.0	0.0068	16.1	0.0	1.6	1	1	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
CbbQ_C	PF08406.10	gi|384433190|ref|YP_005642548.1|	-	0.06	13.6	0.3	0.16	12.3	0.3	1.7	1	1	0	1	1	1	0	CbbQ/NirQ/NorQ	C-terminal
Acetyltransf_CG	PF14542.6	gi|384433190|ref|YP_005642548.1|	-	0.11	12.6	0.3	20	5.4	0.0	2.6	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
ADH_N	PF08240.12	gi|384433191|ref|YP_005642549.1|	-	1.4e-24	86.0	0.3	3.2e-23	81.7	0.3	2.2	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384433191|ref|YP_005642549.1|	-	1.1e-15	57.8	0.0	8.4e-15	54.9	0.0	2.2	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384433191|ref|YP_005642549.1|	-	1e-10	42.8	0.0	1.6e-10	42.1	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|384433191|ref|YP_005642549.1|	-	2.2e-05	24.1	0.1	5.7e-05	22.7	0.1	1.6	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
Epimerase	PF01370.21	gi|384433191|ref|YP_005642549.1|	-	0.0084	15.6	0.1	0.013	15.0	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|384433191|ref|YP_005642549.1|	-	0.036	13.2	0.2	5.4	6.0	0.1	2.1	1	1	0	2	2	2	0	RmlD	substrate	binding	domain
adh_short	PF00106.25	gi|384433191|ref|YP_005642549.1|	-	0.15	11.5	0.0	0.25	10.8	0.0	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
XdhC_C	PF13478.6	gi|384433192|ref|YP_005642550.1|	-	2.5e-22	79.7	0.1	3.5e-22	79.2	0.1	1.2	1	0	0	1	1	1	1	XdhC	Rossmann	domain
DUF973	PF06157.11	gi|384433193|ref|YP_005642551.1|	-	1.6e-21	76.7	28.2	1.9e-21	76.4	28.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
Radical_SAM	PF04055.21	gi|384433194|ref|YP_005642552.1|	-	1.3e-16	61.4	0.0	5.7e-16	59.3	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
PBP_like_2	PF12849.7	gi|384433194|ref|YP_005642552.1|	-	0.16	11.6	0.0	17	4.9	0.0	2.1	2	0	0	2	2	2	0	PBP	superfamily	domain
DUF772	PF05598.11	gi|384433195|ref|YP_005642553.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384433195|ref|YP_005642553.1|	-	0.031	13.9	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
Lactamase_B	PF00753.27	gi|384433196|ref|YP_005642554.1|	-	5.6e-26	91.8	0.7	7.8e-26	91.3	0.7	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384433196|ref|YP_005642554.1|	-	5.1e-05	22.9	0.1	8.5e-05	22.2	0.1	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|384433196|ref|YP_005642554.1|	-	0.027	13.9	0.2	0.052	13.0	0.2	1.4	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Asp_protease_2	PF13650.6	gi|384433196|ref|YP_005642554.1|	-	0.092	13.4	0.0	0.23	12.1	0.0	1.6	1	0	0	1	1	1	0	Aspartyl	protease
Rieske	PF00355.26	gi|384433197|ref|YP_005642555.1|	-	3.3e-14	52.6	0.0	3.7e-14	52.4	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|384433197|ref|YP_005642555.1|	-	2.7e-10	40.1	0.0	3.2e-10	39.9	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Tfb5	PF06331.12	gi|384433197|ref|YP_005642555.1|	-	0.11	12.5	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Transcription	factor	TFIIH	complex	subunit	Tfb5
Pyr_redox_2	PF07992.14	gi|384433198|ref|YP_005642556.1|	-	9e-20	71.1	0.0	2.1e-19	69.9	0.0	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384433198|ref|YP_005642556.1|	-	8.3e-07	29.5	0.1	0.015	15.9	0.0	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384433198|ref|YP_005642556.1|	-	2.1e-05	23.4	0.0	0.45	9.2	0.0	3.1	3	0	0	3	3	3	3	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|384433198|ref|YP_005642556.1|	-	3.2e-05	23.2	0.1	0.1	11.6	0.1	3.1	2	1	1	3	3	3	2	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|384433198|ref|YP_005642556.1|	-	7.1e-05	22.8	0.0	0.95	9.4	0.0	3.1	3	0	0	3	3	3	2	FAD-NAD(P)-binding
DAO	PF01266.24	gi|384433198|ref|YP_005642556.1|	-	0.00064	19.4	0.1	0.26	10.8	0.0	3.0	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|384433198|ref|YP_005642556.1|	-	0.0025	16.7	0.0	0.0086	15.0	0.0	1.8	2	0	0	2	2	2	1	Tryptophan	halogenase
FAD_binding_3	PF01494.19	gi|384433198|ref|YP_005642556.1|	-	0.0069	15.7	0.1	0.17	11.1	0.0	2.2	2	0	0	2	2	2	1	FAD	binding	domain
TrkA_N	PF02254.18	gi|384433198|ref|YP_005642556.1|	-	0.016	15.5	0.1	0.032	14.5	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|384433198|ref|YP_005642556.1|	-	0.017	15.5	0.0	0.037	14.5	0.0	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
GIDA	PF01134.22	gi|384433198|ref|YP_005642556.1|	-	0.035	13.2	0.2	0.97	8.4	0.0	2.2	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|384433198|ref|YP_005642556.1|	-	0.12	12.7	0.0	0.23	11.7	0.0	1.5	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Diphthami_syn_2	PF01902.17	gi|384433198|ref|YP_005642556.1|	-	0.17	11.4	0.0	0.31	10.5	0.0	1.3	1	0	0	1	1	1	0	Diphthamide	synthase
E1-E2_ATPase	PF00122.20	gi|384433199|ref|YP_005642557.1|	-	1.4e-39	135.4	0.0	1.4e-39	135.4	0.0	1.8	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|384433199|ref|YP_005642557.1|	-	2e-38	132.8	0.6	3.7e-38	131.9	0.1	1.7	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|384433199|ref|YP_005642557.1|	-	1.8e-12	47.6	3.3	1.8e-08	34.5	1.2	3.0	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|384433199|ref|YP_005642557.1|	-	2.4e-11	43.9	0.9	2.4e-11	43.9	0.9	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
HAD_2	PF13419.6	gi|384433199|ref|YP_005642557.1|	-	2.4e-06	27.7	2.1	1.6e-05	25.0	2.1	2.2	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|384433199|ref|YP_005642557.1|	-	0.046	14.1	0.0	0.14	12.6	0.0	1.7	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Helicase_C	PF00271.31	gi|384433199|ref|YP_005642557.1|	-	0.049	14.0	0.1	0.13	12.6	0.1	1.7	1	0	0	1	1	1	0	Helicase	conserved	C-terminal	domain
AhpC-TSA	PF00578.21	gi|384433199|ref|YP_005642557.1|	-	0.19	11.7	0.4	0.47	10.4	0.0	1.8	2	0	0	2	2	2	0	AhpC/TSA	family
DNA_photolyase	PF00875.18	gi|384433199|ref|YP_005642557.1|	-	0.2	11.7	0.0	0.35	10.9	0.0	1.3	1	0	0	1	1	1	0	DNA	photolyase
HxlR	PF01638.17	gi|384433200|ref|YP_005642558.1|	-	7.4e-19	67.4	0.0	9.4e-19	67.1	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|384433200|ref|YP_005642558.1|	-	0.00051	19.9	0.0	0.00075	19.4	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
MarR	PF01047.22	gi|384433200|ref|YP_005642558.1|	-	0.017	15.1	0.0	0.027	14.4	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.20	gi|384433200|ref|YP_005642558.1|	-	0.017	15.0	0.0	0.05	13.5	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.6	gi|384433200|ref|YP_005642558.1|	-	0.089	13.0	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HMA	PF00403.26	gi|384433201|ref|YP_005642559.1|	-	2.3e-11	44.0	0.9	2.9e-11	43.7	0.9	1.2	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Macro	PF01661.21	gi|384433204|ref|YP_005642562.1|	-	3.7e-36	123.8	0.0	5.3e-36	123.2	0.0	1.2	1	0	0	1	1	1	1	Macro	domain
Macro_2	PF14519.6	gi|384433204|ref|YP_005642562.1|	-	0.067	12.5	0.3	1	8.6	0.1	2.1	2	0	0	2	2	2	0	Macro-like	domain
Glycos_transf_1	PF00534.20	gi|384433205|ref|YP_005642563.1|	-	1.6e-17	63.5	0.0	3.6e-17	62.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384433205|ref|YP_005642563.1|	-	5.9e-12	46.2	0.0	1.2e-11	45.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|384433205|ref|YP_005642563.1|	-	0.0076	16.6	0.0	0.021	15.2	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
PIG-L	PF02585.17	gi|384433206|ref|YP_005642564.1|	-	7.7e-30	104.2	0.0	9.6e-30	103.9	0.0	1.1	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
TK	PF00265.18	gi|384433206|ref|YP_005642564.1|	-	0.041	13.8	0.0	0.057	13.3	0.0	1.3	1	0	0	1	1	1	0	Thymidine	kinase
SQS_PSY	PF00494.19	gi|384433208|ref|YP_005642566.1|	-	2.6e-44	151.7	0.0	3e-44	151.5	0.0	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
FA_hydroxylase	PF04116.13	gi|384433209|ref|YP_005642567.1|	-	7.6e-11	42.5	10.5	9.4e-11	42.2	10.5	1.1	1	0	0	1	1	1	1	Fatty	acid	hydroxylase	superfamily
DUF4395	PF14340.6	gi|384433209|ref|YP_005642567.1|	-	0.075	13.4	0.4	0.098	13.0	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
Amino_oxidase	PF01593.24	gi|384433210|ref|YP_005642568.1|	-	1.6e-16	60.6	0.0	4.4e-11	42.7	0.0	2.9	2	1	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|384433210|ref|YP_005642568.1|	-	2.2e-11	43.8	0.0	4.1e-11	42.9	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|384433210|ref|YP_005642568.1|	-	4.8e-07	29.7	0.0	1.1e-05	25.2	0.0	2.4	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|384433210|ref|YP_005642568.1|	-	9.5e-05	21.6	0.0	0.027	13.6	0.0	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384433210|ref|YP_005642568.1|	-	0.0011	18.3	0.2	0.014	14.7	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384433210|ref|YP_005642568.1|	-	0.0023	18.5	1.9	0.24	12.0	0.2	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384433210|ref|YP_005642568.1|	-	0.015	14.0	0.0	0.2	10.3	0.1	2.1	2	0	0	2	2	2	0	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384433210|ref|YP_005642568.1|	-	0.024	14.0	0.0	0.034	13.5	0.0	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384433210|ref|YP_005642568.1|	-	0.032	13.5	0.4	0.071	12.4	0.1	1.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|384433210|ref|YP_005642568.1|	-	0.075	12.3	0.1	0.11	11.7	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Thi4	PF01946.17	gi|384433210|ref|YP_005642568.1|	-	0.16	11.2	0.2	0.25	10.5	0.2	1.2	1	0	0	1	1	1	0	Thi4	family
TP_methylase	PF00590.20	gi|384433211|ref|YP_005642569.1|	-	6.7e-46	156.9	0.0	8.4e-46	156.6	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
NIR_SIR	PF01077.22	gi|384433212|ref|YP_005642570.1|	-	1.1e-45	155.0	0.0	1.1e-43	148.5	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|384433212|ref|YP_005642570.1|	-	7.9e-24	83.3	0.0	6.1e-11	42.0	0.0	3.6	3	1	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
PAPS_reduct	PF01507.19	gi|384433213|ref|YP_005642571.1|	-	1.6e-48	165.0	0.0	1.9e-48	164.8	0.0	1.1	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
Pyrophosphatase	PF00719.19	gi|384433213|ref|YP_005642571.1|	-	0.026	14.3	0.1	0.043	13.6	0.1	1.3	1	0	0	1	1	1	0	Inorganic	pyrophosphatase
RsfS	PF02410.15	gi|384433213|ref|YP_005642571.1|	-	0.037	14.4	0.0	0.054	13.9	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	silencing	factor	during	starvation
HHH_9	PF17674.1	gi|384433213|ref|YP_005642571.1|	-	0.062	14.2	0.0	0.13	13.2	0.0	1.6	1	0	0	1	1	1	0	HHH	domain
Glyco_transf_52	PF07922.11	gi|384433213|ref|YP_005642571.1|	-	0.064	12.5	0.1	0.091	12.0	0.1	1.2	1	0	0	1	1	1	0	Glycosyltransferase	family	52
ATP-sulfurylase	PF01747.17	gi|384433214|ref|YP_005642572.1|	-	7.6e-78	260.8	0.0	1e-77	260.4	0.0	1.2	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.6	gi|384433214|ref|YP_005642572.1|	-	1.9e-39	134.9	0.0	3.2e-39	134.2	0.0	1.3	1	0	0	1	1	1	1	PUA-like	domain
TF_Zn_Ribbon	PF08271.12	gi|384433214|ref|YP_005642572.1|	-	0.00027	20.4	0.2	0.00069	19.1	0.2	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
DUF309	PF03745.14	gi|384433214|ref|YP_005642572.1|	-	0.081	12.6	0.6	2.8	7.7	0.0	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF309)
zf-NADH-PPase	PF09297.11	gi|384433214|ref|YP_005642572.1|	-	0.42	10.3	1.5	8.2	6.2	0.3	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF4375	PF14300.6	gi|384433215|ref|YP_005642573.1|	-	0.019	15.2	0.0	0.025	14.8	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4375)
TauE	PF01925.19	gi|384433216|ref|YP_005642574.1|	-	1.1e-19	71.1	13.6	1.4e-19	70.7	13.6	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
CcmB	PF03379.13	gi|384433216|ref|YP_005642574.1|	-	0.004	16.7	1.5	0.0079	15.7	1.5	1.5	1	0	0	1	1	1	1	CcmB	protein
Glycogen_syn	PF05693.13	gi|384433216|ref|YP_005642574.1|	-	0.033	12.7	0.0	0.046	12.3	0.0	1.2	1	0	0	1	1	1	0	Glycogen	synthase
DUF4083	PF13314.6	gi|384433217|ref|YP_005642575.1|	-	0.0034	17.3	0.2	0.0034	17.3	0.2	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4083)
SLAC1	PF03595.17	gi|384433218|ref|YP_005642576.1|	-	3e-15	56.3	46.4	7.6e-15	55.0	46.4	1.6	1	1	0	1	1	1	1	Voltage-dependent	anion	channel
pXO2-34	PF17362.2	gi|384433218|ref|YP_005642576.1|	-	0.066	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Family	of	unknown	function
DDE_Tnp_1	PF01609.21	gi|384433219|ref|YP_005642577.1|	-	0.014	15.1	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
DUF772	PF05598.11	gi|384433220|ref|YP_005642578.1|	-	1.8e-09	37.4	0.0	2.8e-09	36.8	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
Gtr1_RagA	PF04670.12	gi|384433220|ref|YP_005642578.1|	-	0.042	13.2	0.0	0.05	12.9	0.0	1.1	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
DDE_Tnp_1	PF01609.21	gi|384433221|ref|YP_005642579.1|	-	2.2e-16	60.2	0.0	2.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|384433222|ref|YP_005642580.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|384433225|ref|YP_005642583.1|	-	4.8e-68	229.8	0.8	5.1e-68	229.7	0.8	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
ADH_zinc_N	PF00107.26	gi|384433225|ref|YP_005642583.1|	-	0.086	12.8	0.1	0.11	12.5	0.1	1.2	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
MarR_2	PF12802.7	gi|384433225|ref|YP_005642583.1|	-	0.096	12.6	0.1	0.16	11.9	0.1	1.4	1	0	0	1	1	1	0	MarR	family
DDE_5	PF13546.6	gi|384433225|ref|YP_005642583.1|	-	0.18	11.1	0.0	0.21	10.9	0.0	1.1	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
DDE_3	PF13358.6	gi|384433226|ref|YP_005642584.1|	-	1.3e-22	80.2	0.0	2.2e-22	79.4	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384433226|ref|YP_005642584.1|	-	6.6e-13	48.1	0.5	1.8e-12	46.7	0.5	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|384433226|ref|YP_005642584.1|	-	1.8e-11	44.5	0.2	4.2e-11	43.3	0.2	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|384433226|ref|YP_005642584.1|	-	2.1e-09	36.9	0.0	4.3e-09	35.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|384433226|ref|YP_005642584.1|	-	3.6e-09	36.5	0.0	6.3e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|384433226|ref|YP_005642584.1|	-	7.6e-08	32.4	0.1	2e-07	31.0	0.0	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
rve	PF00665.26	gi|384433226|ref|YP_005642584.1|	-	1.2e-07	31.9	0.0	4.2e-07	30.2	0.0	1.9	1	1	0	2	2	2	1	Integrase	core	domain
LZ_Tnp_IS481	PF13011.6	gi|384433226|ref|YP_005642584.1|	-	6.2e-06	26.7	0.0	1.1e-05	25.8	0.0	1.4	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.12	gi|384433226|ref|YP_005642584.1|	-	0.00017	21.4	0.2	0.0055	16.6	0.0	2.5	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
DDE_Tnp_ISAZ013	PF07592.11	gi|384433226|ref|YP_005642584.1|	-	0.00038	19.5	1.8	0.0066	15.5	0.3	2.2	2	0	0	2	2	2	1	Rhodopirellula	transposase	DDE	domain
Sigma70_r4_2	PF08281.12	gi|384433226|ref|YP_005642584.1|	-	0.016	14.9	0.0	0.031	13.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Tma16	PF11176.8	gi|384433226|ref|YP_005642584.1|	-	0.055	13.3	3.1	0.056	13.3	0.6	2.1	2	0	0	2	2	2	0	Translation	machinery-associated	protein	16
HTH_Tnp_1	PF01527.20	gi|384433226|ref|YP_005642584.1|	-	0.092	13.1	0.1	2.4	8.5	0.1	2.5	2	0	0	2	2	2	0	Transposase
DUF1829	PF08862.10	gi|384433226|ref|YP_005642584.1|	-	0.13	12.8	1.8	0.53	10.8	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF1829
TFIIF_beta	PF02270.15	gi|384433226|ref|YP_005642584.1|	-	0.74	10.0	4.4	0.89	9.7	0.2	3.0	3	0	0	3	3	3	0	TFIIF,	beta	subunit	HTH	domain
DDE_3	PF13358.6	gi|384433227|ref|YP_005642585.1|	-	1.2e-22	80.2	0.0	2.2e-22	79.4	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384433227|ref|YP_005642585.1|	-	1.7e-12	46.8	0.5	4.5e-12	45.4	0.5	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|384433227|ref|YP_005642585.1|	-	1.5e-11	44.8	0.2	3.4e-11	43.6	0.2	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|384433227|ref|YP_005642585.1|	-	2.1e-09	36.9	0.0	4.3e-09	35.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|384433227|ref|YP_005642585.1|	-	3.6e-09	36.5	0.0	6.3e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|384433227|ref|YP_005642585.1|	-	7.7e-08	32.3	0.1	2e-07	31.0	0.0	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
rve	PF00665.26	gi|384433227|ref|YP_005642585.1|	-	1.2e-07	31.9	0.0	4.5e-07	30.1	0.0	1.9	1	1	0	2	2	2	1	Integrase	core	domain
LZ_Tnp_IS481	PF13011.6	gi|384433227|ref|YP_005642585.1|	-	6.1e-06	26.7	0.0	1.1e-05	25.8	0.0	1.4	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.12	gi|384433227|ref|YP_005642585.1|	-	0.00017	21.4	0.2	0.0055	16.6	0.0	2.5	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
DDE_Tnp_ISAZ013	PF07592.11	gi|384433227|ref|YP_005642585.1|	-	0.00025	20.1	2.0	0.0039	16.2	0.4	2.2	2	0	0	2	2	2	1	Rhodopirellula	transposase	DDE	domain
Sigma70_r4_2	PF08281.12	gi|384433227|ref|YP_005642585.1|	-	0.016	14.9	0.0	0.031	13.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Tma16	PF11176.8	gi|384433227|ref|YP_005642585.1|	-	0.055	13.4	3.1	0.056	13.3	0.6	2.1	2	0	0	2	2	2	0	Translation	machinery-associated	protein	16
HTH_Tnp_1	PF01527.20	gi|384433227|ref|YP_005642585.1|	-	0.093	13.1	0.1	2.4	8.5	0.1	2.5	2	0	0	2	2	2	0	Transposase
DUF1829	PF08862.10	gi|384433227|ref|YP_005642585.1|	-	0.13	12.8	1.8	0.53	10.8	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF1829
TFIIF_beta	PF02270.15	gi|384433227|ref|YP_005642585.1|	-	1.2	9.4	4.5	1.3	9.2	0.2	3.0	3	0	0	3	3	3	0	TFIIF,	beta	subunit	HTH	domain
HTH_33	PF13592.6	gi|384433228|ref|YP_005642586.1|	-	1.4e-12	47.0	0.1	4e-11	42.4	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384433228|ref|YP_005642586.1|	-	1.3e-07	31.2	0.0	2.2e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384433228|ref|YP_005642586.1|	-	3e-07	30.6	0.2	4.4e-07	30.1	0.2	1.3	1	0	0	1	1	1	1	Transposase
HTH_28	PF13518.6	gi|384433228|ref|YP_005642586.1|	-	7.8e-07	29.1	0.0	1.9e-06	27.9	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384433228|ref|YP_005642586.1|	-	8.8e-06	25.8	2.4	2.7e-05	24.2	2.4	1.7	1	1	0	1	1	1	1	Transposase
HTH_17	PF12728.7	gi|384433228|ref|YP_005642586.1|	-	1.7e-05	24.9	1.3	6.8e-05	23.0	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|384433228|ref|YP_005642586.1|	-	5.7e-05	23.1	0.1	0.00011	22.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384433228|ref|YP_005642586.1|	-	0.00014	22.4	0.0	0.0003	21.3	0.0	1.6	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384433228|ref|YP_005642586.1|	-	0.00052	19.7	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384433228|ref|YP_005642586.1|	-	0.0009	19.4	0.0	0.0014	18.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384433228|ref|YP_005642586.1|	-	0.0048	16.6	0.0	0.0088	15.8	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
TnsD	PF15978.5	gi|384433228|ref|YP_005642586.1|	-	0.0089	15.0	0.1	0.011	14.7	0.1	1.1	1	0	0	1	1	1	1	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384433228|ref|YP_005642586.1|	-	0.011	15.8	0.0	0.024	14.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384433228|ref|YP_005642586.1|	-	0.015	15.3	0.1	0.052	13.6	0.0	1.9	2	0	0	2	2	2	0	HTH	domain
MerR_1	PF13411.6	gi|384433228|ref|YP_005642586.1|	-	0.022	14.8	0.0	0.11	12.6	0.0	2.1	2	0	0	2	2	2	0	MerR	HTH	family	regulatory	protein
DUF4304	PF14137.6	gi|384433228|ref|YP_005642586.1|	-	0.022	14.9	1.8	0.12	12.6	0.1	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4304)
CENP-B_N	PF04218.13	gi|384433228|ref|YP_005642586.1|	-	0.025	14.2	0.0	0.058	13.0	0.0	1.6	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|384433228|ref|YP_005642586.1|	-	0.028	13.8	0.0	0.055	12.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_3	PF01381.22	gi|384433228|ref|YP_005642586.1|	-	0.059	13.4	0.0	0.16	12.1	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384433228|ref|YP_005642586.1|	-	0.12	12.1	0.0	0.24	11.1	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_40	PF14493.6	gi|384433228|ref|YP_005642586.1|	-	0.14	12.6	0.0	0.21	12.0	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
Hydantoinase_B	PF02538.14	gi|384433229|ref|YP_005642587.1|	-	5.1e-182	605.9	0.9	6.2e-182	605.6	0.9	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
EIF_2_alpha	PF07541.12	gi|384433229|ref|YP_005642587.1|	-	0.092	12.8	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	2	alpha	subunit
GAPES1	PF17155.4	gi|384433229|ref|YP_005642587.1|	-	0.11	11.7	0.1	0.21	10.9	0.1	1.3	1	0	0	1	1	1	0	Gammaproteobacterial	periplasmic	sensor	domain
Hydantoinase_A	PF01968.18	gi|384433230|ref|YP_005642588.1|	-	1.5e-97	326.3	0.4	2.7e-96	322.2	0.0	2.1	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|384433230|ref|YP_005642588.1|	-	2.1e-51	174.2	0.1	3.5e-51	173.4	0.1	1.4	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
FtsA	PF14450.6	gi|384433230|ref|YP_005642588.1|	-	0.2	12.1	0.7	1.8	9.0	0.0	2.6	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Rieske	PF00355.26	gi|384433231|ref|YP_005642589.1|	-	1.3e-07	31.5	0.0	1.6e-07	31.2	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|384433231|ref|YP_005642589.1|	-	0.056	13.4	0.0	0.061	13.3	0.0	1.2	1	0	0	1	1	1	0	Rieske-like	[2Fe-2S]	domain
Sugar_tr	PF00083.24	gi|384433232|ref|YP_005642590.1|	-	2.2e-28	99.3	41.7	3.7e-27	95.3	41.7	1.9	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384433232|ref|YP_005642590.1|	-	3.9e-28	98.4	78.0	2.6e-24	85.8	46.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF2754	PF10953.8	gi|384433232|ref|YP_005642590.1|	-	2.5	8.4	7.6	0.66	10.3	2.1	3.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2754)
DUF4322	PF14210.6	gi|384433233|ref|YP_005642591.1|	-	2.5e-12	46.5	0.1	3e-12	46.2	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
Amdase	PF17645.1	gi|384433234|ref|YP_005642592.1|	-	5.8e-34	117.6	0.0	7.2e-34	117.3	0.0	1.0	1	0	0	1	1	1	1	Arylmalonate	decarboxylase
Asp_Glu_race	PF01177.22	gi|384433234|ref|YP_005642592.1|	-	3.5e-26	92.5	0.0	4e-26	92.3	0.0	1.0	1	0	0	1	1	1	1	Asp/Glu/Hydantoin	racemase
Lactamase_B	PF00753.27	gi|384433235|ref|YP_005642593.1|	-	1.3e-20	74.3	0.1	1.7e-20	73.9	0.1	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384433235|ref|YP_005642593.1|	-	0.00031	20.3	0.0	0.00047	19.7	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|384433235|ref|YP_005642593.1|	-	0.03	14.2	0.0	0.12	12.3	0.0	1.7	1	1	1	2	2	2	0	Beta-lactamase	superfamily	domain
FAA_hydrolase	PF01557.18	gi|384433236|ref|YP_005642594.1|	-	1.9e-40	138.9	0.0	2.3e-40	138.6	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Ald_Xan_dh_C2	PF02738.18	gi|384433237|ref|YP_005642595.1|	-	1.7e-114	383.3	0.0	1.4e-89	301.0	0.0	2.2	1	1	1	2	2	2	2	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384433237|ref|YP_005642595.1|	-	3.1e-12	46.8	0.0	8e-12	45.5	0.0	1.7	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Transposase_20	PF02371.16	gi|384433238|ref|YP_005642596.1|	-	4.6e-27	94.1	0.0	9.5e-27	93.2	0.0	1.6	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384433238|ref|YP_005642596.1|	-	6.6e-15	55.3	0.0	1.3e-14	54.3	0.0	1.5	1	0	0	1	1	1	1	Transposase
PDDEXK_10	PF07788.11	gi|384433239|ref|YP_005642597.1|	-	4.8e-37	125.8	1.8	1.5e-36	124.2	1.8	1.8	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
DUF3782	PF12644.7	gi|384433239|ref|YP_005642597.1|	-	6.9e-23	80.6	8.4	1.3e-21	76.5	0.4	3.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3782)
DUF2730	PF10805.8	gi|384433239|ref|YP_005642597.1|	-	0.00048	20.2	5.9	0.06	13.4	1.0	2.7	1	1	0	2	2	2	2	Protein	of	unknown	function	(DUF2730)
HlyD_2	PF12700.7	gi|384433239|ref|YP_005642597.1|	-	0.0014	17.5	8.9	0.0028	16.5	8.9	1.4	1	0	0	1	1	1	1	HlyD	family	secretion	protein
PCRF	PF03462.18	gi|384433239|ref|YP_005642597.1|	-	0.014	15.3	3.2	0.024	14.5	3.2	1.3	1	0	0	1	1	1	0	PCRF	domain
THOC7	PF05615.13	gi|384433239|ref|YP_005642597.1|	-	0.02	15.2	4.0	0.034	14.4	4.0	1.4	1	0	0	1	1	1	0	Tho	complex	subunit	7
CorA	PF01544.18	gi|384433239|ref|YP_005642597.1|	-	0.022	14.1	1.1	0.031	13.6	1.1	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
ScsC_N	PF18312.1	gi|384433239|ref|YP_005642597.1|	-	0.028	14.2	0.4	0.12	12.3	0.2	2.2	1	1	1	2	2	2	0	Copper	resistance	protein	ScsC	N-terminal	domain
MutS_III	PF05192.18	gi|384433239|ref|YP_005642597.1|	-	0.067	13.4	0.1	0.077	13.2	0.1	1.2	1	0	0	1	1	1	0	MutS	domain	III
P4Ha_N	PF08336.11	gi|384433239|ref|YP_005642597.1|	-	0.089	12.8	3.5	0.21	11.6	3.5	1.7	1	1	0	1	1	1	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
DUF3349	PF11829.8	gi|384433239|ref|YP_005642597.1|	-	0.26	12.1	3.7	1.7	9.5	0.8	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3349)
MRPL52	PF18699.1	gi|384433239|ref|YP_005642597.1|	-	0.33	11.2	4.1	0.7	10.1	4.1	1.6	1	0	0	1	1	1	0	Mitoribosomal	protein	mL52
DUF4363	PF14276.6	gi|384433239|ref|YP_005642597.1|	-	0.39	10.9	8.4	0.51	10.5	7.5	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4363)
DUF4094	PF13334.6	gi|384433239|ref|YP_005642597.1|	-	1.3	9.5	3.9	11	6.5	2.7	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4094)
DUF3967	PF13152.6	gi|384433239|ref|YP_005642597.1|	-	6	6.7	9.5	12	5.8	5.8	3.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3967)
PP28	PF10252.9	gi|384433239|ref|YP_005642597.1|	-	8.4	6.9	10.5	15	6.1	8.8	2.1	1	1	1	2	2	2	0	Casein	kinase	substrate	phosphoprotein	PP28
Synaptobrevin	PF00957.21	gi|384433239|ref|YP_005642597.1|	-	8.7	6.2	8.8	7.4	6.4	2.2	2.7	1	1	0	2	2	2	0	Synaptobrevin
MazE_antitoxin	PF04014.18	gi|384433241|ref|YP_005642599.1|	-	4e-11	42.6	4.1	5.4e-11	42.1	4.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Pec_lyase_C	PF00544.19	gi|384433241|ref|YP_005642599.1|	-	0.048	13.2	0.1	0.053	13.1	0.1	1.0	1	0	0	1	1	1	0	Pectate	lyase
eIF-1a	PF01176.19	gi|384433241|ref|YP_005642599.1|	-	0.072	12.9	3.7	0.11	12.3	3.7	1.5	1	1	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
PrlF_antitoxin	PF15937.5	gi|384433241|ref|YP_005642599.1|	-	0.14	12.6	0.1	0.19	12.2	0.1	1.2	1	0	0	1	1	1	0	prlF	antitoxin	for	toxin	YhaV_toxin
PIN	PF01850.21	gi|384433242|ref|YP_005642600.1|	-	4.3e-09	36.9	0.1	5.2e-09	36.7	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_5	PF08745.11	gi|384433242|ref|YP_005642600.1|	-	0.0018	17.7	0.3	0.0051	16.3	0.3	1.7	1	1	0	1	1	1	1	PINc	domain	ribonuclease
PIN_9	PF18477.1	gi|384433242|ref|YP_005642600.1|	-	0.017	15.4	0.1	0.072	13.4	0.0	2.0	2	1	0	2	2	2	0	PIN	like	domain
DUF5615	PF18480.1	gi|384433242|ref|YP_005642600.1|	-	0.084	12.6	0.1	0.18	11.6	0.0	1.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5615)
dUTPase	PF00692.19	gi|384433244|ref|YP_005642602.1|	-	2e-06	27.5	0.0	3.4e-06	26.7	0.0	1.4	2	0	0	2	2	2	1	dUTPase
DCD	PF06559.11	gi|384433244|ref|YP_005642602.1|	-	0.18	10.6	0.0	0.54	9.0	0.0	1.8	1	1	0	1	1	1	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
MFS_1	PF07690.16	gi|384433245|ref|YP_005642603.1|	-	6.6e-10	38.4	41.2	6.9e-06	25.2	11.0	3.1	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
ABC_tran	PF00005.27	gi|384433246|ref|YP_005642604.1|	-	2.4e-33	115.5	0.0	4.3e-33	114.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384433246|ref|YP_005642604.1|	-	2.1e-16	60.2	0.0	4.2e-16	59.2	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|384433246|ref|YP_005642604.1|	-	5.4e-06	26.4	5.2	9.8e-06	25.6	0.5	2.2	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384433246|ref|YP_005642604.1|	-	0.00098	18.6	0.7	0.037	13.5	0.7	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|384433246|ref|YP_005642604.1|	-	0.0013	19.0	2.7	0.014	15.7	2.7	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|384433246|ref|YP_005642604.1|	-	0.008	14.9	0.6	0.11	11.2	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|384433246|ref|YP_005642604.1|	-	0.013	15.9	0.0	0.019	15.4	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384433246|ref|YP_005642604.1|	-	0.021	14.5	0.4	0.041	13.6	0.4	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP-synt_ab	PF00006.25	gi|384433246|ref|YP_005642604.1|	-	0.14	11.8	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SbcCD_C	PF13558.6	gi|384433246|ref|YP_005642604.1|	-	0.18	12.0	0.0	1.5	9.1	0.0	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DEAD	PF00270.29	gi|384433246|ref|YP_005642604.1|	-	0.27	11.0	1.4	1.7	8.4	1.4	2.1	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
ABC_tran	PF00005.27	gi|384433247|ref|YP_005642605.1|	-	1.7e-29	103.1	0.0	3e-29	102.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384433247|ref|YP_005642605.1|	-	1.5e-16	60.6	0.0	2.9e-16	59.7	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|384433247|ref|YP_005642605.1|	-	2.3e-06	27.2	2.7	6.3e-06	25.8	2.7	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|384433247|ref|YP_005642605.1|	-	0.00018	21.4	5.4	0.0025	17.7	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384433247|ref|YP_005642605.1|	-	0.0014	18.3	0.0	0.003	17.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|384433247|ref|YP_005642605.1|	-	0.0069	16.7	0.1	0.024	14.9	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|384433247|ref|YP_005642605.1|	-	0.041	14.0	0.1	0.1	12.7	0.1	1.7	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
TniB	PF05621.11	gi|384433247|ref|YP_005642605.1|	-	0.079	12.4	0.4	1.4	8.3	0.1	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
ResIII	PF04851.15	gi|384433247|ref|YP_005642605.1|	-	0.11	12.5	0.1	4.9	7.1	0.1	2.3	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
RsgA_GTPase	PF03193.16	gi|384433247|ref|YP_005642605.1|	-	0.12	12.3	0.5	0.31	10.9	0.1	1.8	2	0	0	2	2	2	0	RsgA	GTPase
NB-ARC	PF00931.22	gi|384433247|ref|YP_005642605.1|	-	0.12	11.6	0.4	0.25	10.5	0.1	1.6	2	0	0	2	2	2	0	NB-ARC	domain
AAA_23	PF13476.6	gi|384433247|ref|YP_005642605.1|	-	0.13	12.7	1.8	0.22	12.0	1.8	1.5	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|384433247|ref|YP_005642605.1|	-	0.14	12.0	0.1	0.32	10.9	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
DUF87	PF01935.17	gi|384433247|ref|YP_005642605.1|	-	0.26	11.4	2.2	0.39	10.8	0.2	1.9	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
BPD_transp_1	PF00528.22	gi|384433248|ref|YP_005642606.1|	-	1.3e-28	100.0	10.9	1.3e-28	100.0	10.9	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|384433248|ref|YP_005642606.1|	-	0.018	15.0	0.7	0.018	15.0	0.7	2.6	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
PIG-P	PF08510.12	gi|384433248|ref|YP_005642606.1|	-	0.12	12.3	0.2	0.12	12.3	0.2	2.2	3	0	0	3	3	3	0	PIG-P
BPD_transp_1	PF00528.22	gi|384433249|ref|YP_005642607.1|	-	7.6e-42	143.1	12.6	7.6e-42	143.1	12.6	1.8	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|384433250|ref|YP_005642608.1|	-	5.4e-63	213.2	1.4	1e-62	212.3	1.4	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
DUF4307	PF14155.6	gi|384433250|ref|YP_005642608.1|	-	0.0014	18.4	0.2	0.0032	17.3	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4307)
Shisa	PF13908.6	gi|384433250|ref|YP_005642608.1|	-	0.17	12.1	1.2	0.34	11.1	1.2	1.4	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
B277	PF17623.2	gi|384433250|ref|YP_005642608.1|	-	0.45	9.5	6.0	0.84	8.7	6.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function
Methyltransf_11	PF08241.12	gi|384433251|ref|YP_005642609.1|	-	7.8e-10	39.3	0.0	1.1e-09	38.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384433251|ref|YP_005642609.1|	-	8.6e-09	36.0	0.0	1.3e-08	35.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384433251|ref|YP_005642609.1|	-	2.1e-08	34.1	0.1	3e-08	33.6	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384433251|ref|YP_005642609.1|	-	2.1e-05	24.0	0.6	4.3e-05	23.0	0.6	1.3	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|384433251|ref|YP_005642609.1|	-	0.00018	21.1	0.0	0.00044	19.8	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|384433251|ref|YP_005642609.1|	-	0.00036	21.2	0.1	0.00068	20.3	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384433251|ref|YP_005642609.1|	-	0.0031	17.4	0.0	0.0054	16.6	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
TPMT	PF05724.11	gi|384433251|ref|YP_005642609.1|	-	0.0099	15.6	0.0	0.012	15.3	0.0	1.1	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
PrmA	PF06325.13	gi|384433251|ref|YP_005642609.1|	-	0.037	13.4	0.0	0.047	13.1	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|384433251|ref|YP_005642609.1|	-	0.07	12.9	0.0	0.093	12.5	0.0	1.4	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.12	gi|384433251|ref|YP_005642609.1|	-	0.098	12.2	0.2	0.26	10.9	0.2	1.8	1	1	1	2	2	2	0	Methionine	biosynthesis	protein	MetW
DUF929	PF06053.11	gi|384433252|ref|YP_005642610.1|	-	1.6e-77	260.2	14.7	1.8e-77	260.1	14.7	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
Oxidored_q2	PF00420.24	gi|384433252|ref|YP_005642610.1|	-	0.0046	16.6	1.1	0.01	15.4	1.1	1.5	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF5412	PF17428.2	gi|384433252|ref|YP_005642610.1|	-	0.013	15.4	0.7	0.12	12.2	0.1	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5412)
Na_H_Exchanger	PF00999.21	gi|384433254|ref|YP_005642612.1|	-	1.3e-24	86.8	54.2	1.3e-24	86.8	54.2	2.1	2	1	0	2	2	2	1	Sodium/hydrogen	exchanger	family
COX2	PF00116.20	gi|384433258|ref|YP_005642616.1|	-	1.5e-14	53.9	0.2	1.1e-13	51.1	0.0	2.0	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|384433258|ref|YP_005642616.1|	-	1.3e-05	25.2	0.0	1.7e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
Cytochrom_B_N_2	PF13631.6	gi|384433259|ref|YP_005642617.1|	-	8.3e-32	110.5	5.3	8.3e-32	110.5	5.3	2.2	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|384433259|ref|YP_005642617.1|	-	2e-23	83.2	10.2	2e-23	83.2	10.2	2.3	3	0	0	3	3	3	1	Cytochrome	b/b6/petB
Ni_hydr_CYTB	PF01292.20	gi|384433259|ref|YP_005642617.1|	-	0.0071	16.0	14.7	0.14	11.7	0.9	3.4	2	1	1	3	3	3	2	Prokaryotic	cytochrome	b561
Cytochrom_B_C	PF00032.17	gi|384433259|ref|YP_005642617.1|	-	0.011	16.0	2.8	0.011	16.0	2.8	3.5	2	2	0	3	3	3	0	Cytochrome	b(C-terminal)/b6/petD
Rieske	PF00355.26	gi|384433260|ref|YP_005642618.1|	-	6.5e-14	51.6	0.0	1.3e-13	50.7	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
TAT_signal	PF10518.9	gi|384433260|ref|YP_005642618.1|	-	0.0021	17.8	0.6	0.0089	15.8	0.1	2.0	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SoxE	PF06525.11	gi|384433261|ref|YP_005642619.1|	-	3.4e-74	247.3	6.1	4.7e-74	246.8	6.1	1.2	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)	domain
Copper-bind	PF00127.20	gi|384433261|ref|YP_005642619.1|	-	0.0041	17.5	0.0	0.0072	16.8	0.0	1.4	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cu-oxidase_2	PF07731.14	gi|384433261|ref|YP_005642619.1|	-	0.035	13.8	0.4	0.2	11.4	0.1	2.1	2	0	0	2	2	2	0	Multicopper	oxidase
DUF2371	PF10177.9	gi|384433261|ref|YP_005642619.1|	-	0.049	13.8	0.1	0.11	12.7	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2371)
COX1	PF00115.20	gi|384433262|ref|YP_005642620.1|	-	1.7e-119	399.5	58.5	1.7e-119	399.5	58.5	2.4	2	1	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.18	gi|384433262|ref|YP_005642620.1|	-	6.2e-16	59.0	21.8	6.2e-16	59.0	21.8	2.9	3	1	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
DUF1404	PF07185.11	gi|384433263|ref|YP_005642621.1|	-	6.3e-57	192.0	17.8	7.3e-57	191.7	17.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
Caa3_CtaG	PF09678.10	gi|384433263|ref|YP_005642621.1|	-	0.12	11.9	11.7	0.013	14.9	3.9	2.1	1	1	1	2	2	2	0	Cytochrome	c	oxidase	caa3	assembly	factor	(Caa3_CtaG)
YvrJ	PF12841.7	gi|384433264|ref|YP_005642622.1|	-	0.063	12.8	1.0	0.063	12.8	1.0	2.1	2	0	0	2	2	2	0	YvrJ	protein	family
LAB_N	PF07578.11	gi|384433264|ref|YP_005642622.1|	-	0.095	12.8	2.9	0.13	12.4	2.9	1.3	1	0	0	1	1	1	0	Lipid	A	Biosynthesis	N-terminal	domain
Gemini_mov	PF01708.16	gi|384433264|ref|YP_005642622.1|	-	0.27	11.0	2.0	0.44	10.3	2.0	1.3	1	0	0	1	1	1	0	Geminivirus	putative	movement	protein
Cellulose_synt	PF03552.14	gi|384433264|ref|YP_005642622.1|	-	0.92	7.9	3.8	0.9	8.0	3.8	1.1	1	0	0	1	1	1	0	Cellulose	synthase
SpoIIM	PF01944.17	gi|384433266|ref|YP_005642624.1|	-	1.3e-11	44.8	14.0	2.9e-11	43.6	14.0	1.5	1	0	0	1	1	1	1	Stage	II	sporulation	protein	M
MIT	PF04212.18	gi|384433266|ref|YP_005642624.1|	-	0.0022	18.0	0.0	0.0054	16.8	0.0	1.7	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
Adeno_E3_14_5	PF04834.12	gi|384433266|ref|YP_005642624.1|	-	0.068	13.7	0.0	0.26	11.9	0.0	2.0	1	0	0	1	1	1	0	Early	E3	14.5	kDa	protein
IF-2B	PF01008.17	gi|384433267|ref|YP_005642625.1|	-	5.6e-74	248.9	0.1	6.6e-74	248.6	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Esterase	PF00756.20	gi|384433268|ref|YP_005642626.1|	-	5.5e-17	62.2	0.0	2.5e-16	60.1	0.0	2.0	1	1	0	1	1	1	1	Putative	esterase
Abhydrolase_1	PF00561.20	gi|384433268|ref|YP_005642626.1|	-	0.00012	21.8	0.0	0.00017	21.3	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
BAAT_C	PF08840.11	gi|384433268|ref|YP_005642626.1|	-	0.0011	18.9	0.0	0.0018	18.3	0.0	1.4	1	0	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S9	PF00326.21	gi|384433268|ref|YP_005642626.1|	-	0.0024	17.4	0.0	0.0082	15.6	0.0	1.7	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Chlorophyllase	PF07224.11	gi|384433268|ref|YP_005642626.1|	-	0.02	14.0	0.0	0.03	13.3	0.0	1.3	1	0	0	1	1	1	0	Chlorophyllase
Hydrolase_4	PF12146.8	gi|384433268|ref|YP_005642626.1|	-	0.02	14.1	0.0	0.032	13.5	0.0	1.3	1	0	0	1	1	1	0	Serine	aminopeptidase,	S33
Chlorophyllase2	PF12740.7	gi|384433268|ref|YP_005642626.1|	-	0.021	13.8	0.0	0.079	11.9	0.0	1.9	2	1	0	2	2	2	0	Chlorophyllase	enzyme
Esterase_phd	PF10503.9	gi|384433268|ref|YP_005642626.1|	-	0.14	11.6	0.0	0.21	11.0	0.0	1.3	1	0	0	1	1	1	0	Esterase	PHB	depolymerase
RadC	PF04002.15	gi|384433269|ref|YP_005642627.1|	-	0.15	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	RadC-like	JAB	domain
Epimerase	PF01370.21	gi|384433270|ref|YP_005642628.1|	-	6.7e-11	42.1	0.0	1.4e-10	41.0	0.0	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|384433270|ref|YP_005642628.1|	-	3.2e-08	33.0	0.0	2.1e-07	30.3	0.0	1.9	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|384433270|ref|YP_005642628.1|	-	1.4e-06	28.0	0.3	0.00023	20.7	0.1	2.1	2	0	0	2	2	2	2	GDP-mannose	4,6	dehydratase
NmrA	PF05368.13	gi|384433270|ref|YP_005642628.1|	-	8.8e-05	22.2	0.0	0.00014	21.5	0.0	1.4	1	0	0	1	1	1	1	NmrA-like	family
NAD_binding_2	PF03446.15	gi|384433270|ref|YP_005642628.1|	-	0.0008	19.6	0.0	0.0016	18.6	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_10	PF13460.6	gi|384433270|ref|YP_005642628.1|	-	0.0073	16.2	0.0	0.026	14.4	0.0	1.9	1	1	0	1	1	1	1	NAD(P)H-binding
3HCDH_N	PF02737.18	gi|384433270|ref|YP_005642628.1|	-	0.22	11.4	0.0	0.42	10.5	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HTH_24	PF13412.6	gi|384433271|ref|YP_005642629.1|	-	0.03	13.9	0.0	0.046	13.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_WhiA	PF02650.14	gi|384433271|ref|YP_005642629.1|	-	0.074	13.4	0.0	0.099	13.0	0.0	1.2	1	0	0	1	1	1	0	WhiA	C-terminal	HTH	domain
GSAP-16	PF14959.6	gi|384433272|ref|YP_005642630.1|	-	0.091	12.6	0.6	0.17	11.8	0.5	1.5	1	1	0	1	1	1	0	gamma-Secretase-activating	protein	C-term
Glycos_transf_1	PF00534.20	gi|384433273|ref|YP_005642631.1|	-	9.9e-13	48.0	0.2	4.1e-12	46.0	0.1	2.1	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384433273|ref|YP_005642631.1|	-	2.3e-10	41.0	0.0	3.9e-10	40.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|384433273|ref|YP_005642631.1|	-	8.1e-07	29.2	0.1	1.5e-06	28.3	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|384433273|ref|YP_005642631.1|	-	0.0053	17.1	0.0	0.011	16.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF4846	PF16138.5	gi|384433273|ref|YP_005642631.1|	-	0.07	12.6	0.1	0.18	11.3	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(4846)
SLATT_4	PF18186.1	gi|384433274|ref|YP_005642632.1|	-	3.9	7.1	9.4	0.18	11.4	0.7	2.2	1	1	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	family	4
DUF3413	PF11893.8	gi|384433274|ref|YP_005642632.1|	-	7.8	5.6	18.4	0.17	11.0	2.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3413)
DDE_Tnp_1	PF01609.21	gi|384433275|ref|YP_005642633.1|	-	2.1e-16	60.2	0.0	2.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
HTH_27	PF13463.6	gi|384433276|ref|YP_005642634.1|	-	0.14	12.7	0.0	0.16	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|384433277|ref|YP_005642635.1|	-	5.2e-26	90.4	3.4	6.5e-26	90.1	3.4	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|384433277|ref|YP_005642635.1|	-	0.0012	18.6	0.9	0.0033	17.2	0.1	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4364)
HTH_24	PF13412.6	gi|384433277|ref|YP_005642635.1|	-	0.0012	18.3	4.3	0.0081	15.7	1.5	2.9	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|384433277|ref|YP_005642635.1|	-	0.0035	17.7	0.1	0.006	16.9	0.1	1.4	1	1	0	1	1	1	1	Transcriptional	regulator
Mrr_N	PF14338.6	gi|384433277|ref|YP_005642635.1|	-	0.0038	17.3	0.1	0.0069	16.5	0.1	1.6	1	1	0	1	1	1	1	Mrr	N-terminal	domain
HemN_C	PF06969.16	gi|384433277|ref|YP_005642635.1|	-	0.0039	17.2	0.0	0.0067	16.5	0.0	1.4	1	0	0	1	1	1	1	HemN	C-terminal	domain
DUF505	PF04458.12	gi|384433277|ref|YP_005642635.1|	-	0.0081	14.6	0.2	0.009	14.4	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_5	PF01022.20	gi|384433277|ref|YP_005642635.1|	-	0.0087	15.9	0.8	0.12	12.2	0.1	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
Malic_M	PF03949.15	gi|384433277|ref|YP_005642635.1|	-	0.0098	15.2	0.1	0.012	14.9	0.1	1.0	1	0	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
Ribosomal_S19e	PF01090.19	gi|384433277|ref|YP_005642635.1|	-	0.016	14.9	0.1	0.021	14.5	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HxlR	PF01638.17	gi|384433277|ref|YP_005642635.1|	-	0.019	14.8	0.3	0.045	13.6	0.3	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_27	PF13463.6	gi|384433277|ref|YP_005642635.1|	-	0.021	15.3	0.3	0.084	13.4	0.0	2.0	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
FokI_C	PF02980.16	gi|384433277|ref|YP_005642635.1|	-	0.026	14.5	0.2	0.031	14.3	0.2	1.1	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	catalytic	domain
Ribosomal_S25	PF03297.15	gi|384433277|ref|YP_005642635.1|	-	0.046	13.9	0.4	0.066	13.4	0.2	1.5	1	1	0	1	1	1	0	S25	ribosomal	protein
DASH_Duo1	PF08651.10	gi|384433277|ref|YP_005642635.1|	-	0.05	13.4	1.2	0.13	12.0	0.1	1.9	2	0	0	2	2	2	0	DASH	complex	subunit	Duo1
Penicillinase_R	PF03965.16	gi|384433278|ref|YP_005642636.1|	-	0.00019	21.7	0.3	0.0037	17.6	0.0	2.6	1	1	2	3	3	3	1	Penicillinase	repressor
TrmB	PF01978.19	gi|384433278|ref|YP_005642636.1|	-	0.0004	20.2	0.6	0.84	9.6	0.1	2.8	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
TINF2_N	PF14973.6	gi|384433278|ref|YP_005642636.1|	-	0.014	15.7	0.5	0.033	14.6	0.4	1.6	2	0	0	2	2	2	0	TERF1-interacting	nuclear	factor	2	N-terminus
SUB1_ProdP9	PF18213.1	gi|384433278|ref|YP_005642636.1|	-	0.036	13.9	1.7	1.1	9.1	0.1	2.8	1	1	1	3	3	3	0	SUB1	protease	Prodomain	ProdP9
HTH_36	PF13730.6	gi|384433278|ref|YP_005642636.1|	-	0.054	13.5	0.8	0.25	11.4	0.2	2.5	2	1	0	2	2	2	0	Helix-turn-helix	domain
RPN6_N	PF18055.1	gi|384433278|ref|YP_005642636.1|	-	0.14	12.5	3.6	0.29	11.5	0.2	2.2	2	0	0	2	2	2	0	26S	proteasome	regulatory	subunit	RPN6	N-terminal	domain
GHMP_kinases_N	PF00288.26	gi|384433279|ref|YP_005642637.1|	-	1.8e-13	50.5	0.3	9e-13	48.3	0.1	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|384433279|ref|YP_005642637.1|	-	1.2e-07	32.0	0.3	3.7e-07	30.4	0.3	1.9	1	1	0	1	1	1	1	GHMP	kinases	C	terminal
V-ATPase_H_C	PF11698.8	gi|384433279|ref|YP_005642637.1|	-	0.069	13.3	0.5	0.16	12.0	0.5	1.6	1	0	0	1	1	1	0	V-ATPase	subunit	H
MDD_C	PF18376.1	gi|384433280|ref|YP_005642638.1|	-	9.3e-38	129.8	0.0	4.3e-35	121.2	0.0	2.3	1	1	1	2	2	2	2	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
GHMP_kinases_N	PF00288.26	gi|384433280|ref|YP_005642638.1|	-	1.4e-09	38.0	0.7	2.6e-09	37.2	0.7	1.4	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
DUF3954	PF13128.6	gi|384433283|ref|YP_005642641.1|	-	2.8	7.8	5.6	3.5	7.5	0.5	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3954)
Nramp	PF01566.18	gi|384433284|ref|YP_005642642.1|	-	2.2e-44	151.9	19.1	2.7e-44	151.6	19.1	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
3HCDH_N	PF02737.18	gi|384433285|ref|YP_005642643.1|	-	2.1e-67	226.5	0.5	3.2e-67	225.9	0.5	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|384433285|ref|YP_005642643.1|	-	2.1e-41	140.5	0.1	1.5e-28	99.2	0.1	2.8	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|384433285|ref|YP_005642643.1|	-	2.4e-05	24.6	0.0	5.7e-05	23.3	0.0	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|384433285|ref|YP_005642643.1|	-	0.00066	20.2	0.0	0.0023	18.5	0.1	1.9	2	1	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|384433285|ref|YP_005642643.1|	-	0.013	15.1	0.0	0.022	14.3	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Methyltransf_12	PF08242.12	gi|384433285|ref|YP_005642643.1|	-	0.013	16.2	0.0	0.034	14.9	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
NAD_Gly3P_dh_N	PF01210.23	gi|384433285|ref|YP_005642643.1|	-	0.014	15.3	0.0	0.071	13.1	0.0	2.1	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.14	gi|384433285|ref|YP_005642643.1|	-	0.028	13.6	0.3	0.052	12.8	0.0	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Methyltransf_25	PF13649.6	gi|384433285|ref|YP_005642643.1|	-	0.034	14.9	0.0	0.28	11.9	0.0	2.3	2	0	0	2	2	2	0	Methyltransferase	domain
Shikimate_DH	PF01488.20	gi|384433285|ref|YP_005642643.1|	-	0.083	13.0	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|384433285|ref|YP_005642643.1|	-	0.11	11.9	0.3	0.32	10.3	0.1	1.9	1	1	1	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|384433285|ref|YP_005642643.1|	-	0.16	12.2	0.0	0.31	11.3	0.0	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
MR_MLE_C	PF13378.6	gi|384433286|ref|YP_005642644.1|	-	1.1e-54	185.3	0.0	3.8e-54	183.6	0.0	1.8	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|384433286|ref|YP_005642644.1|	-	1.2e-10	41.6	0.0	2e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Dus	PF01207.17	gi|384433286|ref|YP_005642644.1|	-	0.18	10.8	0.0	0.29	10.2	0.0	1.2	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
Cpn60_TCP1	PF00118.24	gi|384433287|ref|YP_005642645.1|	-	1.2e-160	535.4	18.1	1.3e-160	535.3	18.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Glyco_tranf_2_3	PF13641.6	gi|384433288|ref|YP_005642646.1|	-	1.4e-15	57.8	0.0	2.3e-15	57.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|384433288|ref|YP_005642646.1|	-	2.7e-15	56.8	0.1	2.7e-15	56.8	0.1	2.2	3	0	0	3	3	3	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|384433288|ref|YP_005642646.1|	-	1.4e-11	44.2	0.0	2.5e-11	43.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.26	gi|384433288|ref|YP_005642646.1|	-	4.5e-11	42.8	0.0	8.1e-11	42.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glu_dehyd_C	PF16912.5	gi|384433289|ref|YP_005642647.1|	-	9.9e-27	93.8	0.0	1.4e-26	93.3	0.0	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|384433289|ref|YP_005642647.1|	-	5.2e-18	64.9	0.1	8.2e-18	64.3	0.1	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
Shikimate_DH	PF01488.20	gi|384433289|ref|YP_005642647.1|	-	1.2e-05	25.4	0.0	2.7e-05	24.2	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_3	PF01494.19	gi|384433289|ref|YP_005642647.1|	-	0.002	17.4	0.0	0.0031	16.8	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384433289|ref|YP_005642647.1|	-	0.022	14.1	0.0	0.057	12.8	0.0	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384433289|ref|YP_005642647.1|	-	0.041	13.1	0.0	0.098	11.9	0.0	1.6	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
DapB_N	PF01113.20	gi|384433289|ref|YP_005642647.1|	-	0.075	13.2	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Glyco_hydro_31	PF01055.26	gi|384433290|ref|YP_005642648.1|	-	4e-131	438.2	0.3	5e-131	437.9	0.3	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
Gal_mutarotas_2	PF13802.6	gi|384433290|ref|YP_005642648.1|	-	7.2e-21	74.3	0.0	2e-20	72.8	0.0	1.8	1	0	0	1	1	1	1	Galactose	mutarotase-like
DUF3858	PF12970.7	gi|384433290|ref|YP_005642648.1|	-	0.19	11.7	1.3	0.73	9.9	0.1	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3858)
Lipase_GDSL_2	PF13472.6	gi|384433291|ref|YP_005642649.1|	-	1.4e-16	61.4	0.0	1.7e-16	61.1	0.0	1.0	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.22	gi|384433291|ref|YP_005642649.1|	-	9.3e-10	38.8	0.1	1.6e-09	38.1	0.1	1.3	1	1	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
DDE_Tnp_IS1	PF03400.13	gi|384433292|ref|YP_005642650.1|	-	8e-08	32.7	0.5	8e-08	32.7	0.5	1.7	2	0	0	2	2	2	1	IS1	transposase
HTH_23	PF13384.6	gi|384433292|ref|YP_005642650.1|	-	0.00017	21.3	1.2	0.0063	16.3	0.6	2.5	2	1	0	2	2	2	1	Homeodomain-like	domain
Zn_Tnp_IS1	PF03811.13	gi|384433292|ref|YP_005642650.1|	-	0.00098	18.8	5.1	0.001	18.7	3.7	1.7	2	0	0	2	2	1	1	InsA	N-terminal	domain
DUF2310	PF10071.9	gi|384433292|ref|YP_005642650.1|	-	0.0013	18.1	0.1	0.0022	17.3	0.1	1.3	1	0	0	1	1	1	1	Zn-ribbon-containing,	possibly	nucleic-acid-binding	protein	(DUF2310)
Zn-ribbon_8	PF09723.10	gi|384433292|ref|YP_005642650.1|	-	0.0018	18.3	3.9	0.6	10.3	0.4	2.5	2	0	0	2	2	2	2	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384433292|ref|YP_005642650.1|	-	0.0045	16.9	3.7	0.0088	16.0	3.7	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
HTH_28	PF13518.6	gi|384433292|ref|YP_005642650.1|	-	0.0073	16.4	0.9	0.03	14.5	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
zinc_ribbon_4	PF13717.6	gi|384433292|ref|YP_005642650.1|	-	0.0082	16.1	3.5	0.018	15.0	3.5	1.6	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|384433292|ref|YP_005642650.1|	-	0.015	15.4	0.3	0.03	14.4	0.3	1.5	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Sigma70_r4_2	PF08281.12	gi|384433292|ref|YP_005642650.1|	-	0.017	14.8	0.6	0.12	12.1	0.5	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
Elf1	PF05129.13	gi|384433292|ref|YP_005642650.1|	-	0.029	14.4	0.7	0.049	13.7	0.7	1.3	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zinc_ribbon_9	PF14369.6	gi|384433292|ref|YP_005642650.1|	-	0.039	14.2	0.4	0.12	12.6	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbon
HTH_38	PF13936.6	gi|384433292|ref|YP_005642650.1|	-	0.081	12.7	1.2	0.23	11.2	1.2	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
zf-H2C2_2	PF13465.6	gi|384433292|ref|YP_005642650.1|	-	0.086	13.3	3.3	0.46	11.0	1.0	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
zinc-ribbons_6	PF07191.12	gi|384433292|ref|YP_005642650.1|	-	0.11	12.5	0.6	0.2	11.6	0.6	1.4	1	0	0	1	1	1	0	zinc-ribbons
HTH_24	PF13412.6	gi|384433292|ref|YP_005642650.1|	-	0.12	12.0	0.1	11	5.7	0.1	2.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|384433292|ref|YP_005642650.1|	-	0.14	12.0	0.5	50	3.8	0.0	3.3	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
DUF4379	PF14311.6	gi|384433292|ref|YP_005642650.1|	-	0.34	11.3	3.7	0.62	10.5	0.3	2.4	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384433292|ref|YP_005642650.1|	-	0.49	10.0	2.9	3.4	7.3	2.9	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-ISL3	PF14690.6	gi|384433292|ref|YP_005642650.1|	-	3.4	8.4	7.7	0.92	10.2	0.8	2.6	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
TFIIS_C	PF01096.18	gi|384433292|ref|YP_005642650.1|	-	6.9	6.6	6.2	20	5.1	1.2	2.4	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
SBP_bac_5	PF00496.22	gi|384433293|ref|YP_005642651.1|	-	2.3e-45	155.2	7.6	3.8e-45	154.5	7.6	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
RIFIN	PF02009.16	gi|384433293|ref|YP_005642651.1|	-	0.0015	18.5	4.2	0.0021	18.0	4.2	1.2	1	0	0	1	1	1	1	Rifin
Podoplanin	PF05808.11	gi|384433293|ref|YP_005642651.1|	-	0.0037	17.4	11.1	0.0058	16.7	11.1	1.3	1	0	0	1	1	1	1	Podoplanin
SSP160	PF06933.11	gi|384433293|ref|YP_005642651.1|	-	0.041	12.1	17.3	0.06	11.5	17.3	1.2	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
VSP	PF03302.13	gi|384433293|ref|YP_005642651.1|	-	0.12	11.2	5.4	0.18	10.6	5.4	1.1	1	0	0	1	1	1	0	Giardia	variant-specific	surface	protein
Stevor	PF17410.2	gi|384433293|ref|YP_005642651.1|	-	0.24	10.9	4.1	0.38	10.3	4.1	1.3	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
FSA_C	PF10479.9	gi|384433293|ref|YP_005642651.1|	-	0.25	9.4	8.0	0.36	8.9	8.0	1.1	1	0	0	1	1	1	0	Fragile	site-associated	protein	C-terminus
Insulin_TMD	PF17870.1	gi|384433293|ref|YP_005642651.1|	-	0.31	11.2	3.8	0.82	9.8	3.8	1.8	1	0	0	1	1	1	0	Insulin	receptor	trans-membrane	segment
DUF5305	PF17231.2	gi|384433293|ref|YP_005642651.1|	-	0.49	9.8	9.2	1.1	8.7	9.2	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5305)
Amnionless	PF14828.6	gi|384433293|ref|YP_005642651.1|	-	0.78	8.5	3.4	1.1	8.0	3.4	1.1	1	0	0	1	1	1	0	Amnionless
TMEM154	PF15102.6	gi|384433293|ref|YP_005642651.1|	-	0.86	9.5	10.6	1.5	8.7	10.6	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
MGC-24	PF05283.11	gi|384433293|ref|YP_005642651.1|	-	0.9	10.0	12.3	1.6	9.2	12.3	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
Shisa	PF13908.6	gi|384433293|ref|YP_005642651.1|	-	1.3	9.2	3.8	2.7	8.2	3.8	1.6	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Protocadherin	PF08374.11	gi|384433293|ref|YP_005642651.1|	-	3.8	7.4	6.6	5.1	7.0	6.6	1.2	1	0	0	1	1	1	0	Protocadherin
Syndecan	PF01034.20	gi|384433293|ref|YP_005642651.1|	-	4	7.4	4.8	8.2	6.4	4.8	1.6	1	0	0	1	1	1	0	Syndecan	domain
EssA	PF10661.9	gi|384433293|ref|YP_005642651.1|	-	4.4	7.1	4.5	6.8	6.5	4.5	1.2	1	0	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	EssA
Aldo_ket_red	PF00248.21	gi|384433294|ref|YP_005642652.1|	-	8.3e-69	232.0	0.0	9.6e-69	231.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
DUF772	PF05598.11	gi|384433295|ref|YP_005642653.1|	-	0.00066	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384433295|ref|YP_005642653.1|	-	0.041	13.5	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
BPD_transp_1	PF00528.22	gi|384433296|ref|YP_005642654.1|	-	2.6e-34	118.6	17.0	2.6e-34	118.6	17.0	2.3	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
VCPO_N	PF17897.1	gi|384433296|ref|YP_005642654.1|	-	0.13	12.1	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Vanadium	chloroperoxidase	N-terminal	domain
YwiC	PF14256.6	gi|384433296|ref|YP_005642654.1|	-	3.2	8.1	13.5	2.9	8.2	4.8	2.7	2	1	1	3	3	3	0	YwiC-like	protein
BPD_transp_1	PF00528.22	gi|384433297|ref|YP_005642655.1|	-	4.1e-14	52.7	19.8	4.1e-14	52.7	19.8	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|384433297|ref|YP_005642655.1|	-	0.015	15.2	0.7	0.015	15.2	0.7	3.3	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Alpha_L_fucos	PF01120.17	gi|384433298|ref|YP_005642656.1|	-	7.6e-100	334.8	1.5	9.4e-100	334.5	1.5	1.0	1	0	0	1	1	1	1	Alpha-L-fucosidase
Fucosidase_C	PF16757.5	gi|384433298|ref|YP_005642656.1|	-	0.0036	17.8	0.0	0.0075	16.8	0.0	1.4	1	0	0	1	1	1	1	Alpha-L-fucosidase	C-terminal	domain
Alpha-E	PF04168.12	gi|384433298|ref|YP_005642656.1|	-	0.049	13.4	0.0	0.067	13.0	0.0	1.1	1	0	0	1	1	1	0	A	predicted	alpha-helical	domain	with	a	conserved	ER	motif.
HTH_10	PF04967.12	gi|384433299|ref|YP_005642657.1|	-	4.9e-19	67.9	0.0	9.9e-19	66.9	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|384433299|ref|YP_005642657.1|	-	0.00094	18.7	0.1	0.002	17.6	0.1	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
GED	PF02212.18	gi|384433299|ref|YP_005642657.1|	-	0.011	15.9	2.1	0.019	15.1	0.3	2.3	2	1	0	2	2	2	0	Dynamin	GTPase	effector	domain
HTH_5	PF01022.20	gi|384433299|ref|YP_005642657.1|	-	0.02	14.8	0.0	0.29	11.0	0.0	2.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.19	gi|384433299|ref|YP_005642657.1|	-	0.064	12.8	0.1	0.064	12.8	0.1	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	luxR	family
Transposase_20	PF02371.16	gi|384433300|ref|YP_005642658.1|	-	7e-25	87.2	0.0	1.2e-24	86.4	0.0	1.4	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384433300|ref|YP_005642658.1|	-	5.1e-07	29.7	1.0	1.9e-06	27.9	0.3	2.3	2	1	0	2	2	2	1	Transposase
XTBD	PF11952.8	gi|384433300|ref|YP_005642658.1|	-	0.035	13.8	0.2	0.082	12.7	0.2	1.6	1	0	0	1	1	1	0	XRN-Two	Binding	Domain,	XTBD
AMP-binding	PF00501.28	gi|384433301|ref|YP_005642659.1|	-	9.3e-82	274.9	0.0	1.1e-81	274.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384433301|ref|YP_005642659.1|	-	1.3e-23	83.7	0.1	3.5e-23	82.4	0.1	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
SBP_bac_8	PF13416.6	gi|384433302|ref|YP_005642660.1|	-	7.7e-09	35.8	8.2	1.5e-08	34.8	8.2	1.6	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|384433302|ref|YP_005642660.1|	-	0.00026	21.1	6.3	0.00026	21.1	6.3	2.5	1	1	2	3	3	3	1	Bacterial	extracellular	solute-binding	protein
Pilin_N	PF07790.11	gi|384433302|ref|YP_005642660.1|	-	0.21	12.5	2.7	0.54	11.2	2.7	1.6	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
ABC2_membrane_2	PF12679.7	gi|384433302|ref|YP_005642660.1|	-	0.85	8.8	7.8	1.8	7.8	7.8	1.4	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
SSP160	PF06933.11	gi|384433302|ref|YP_005642660.1|	-	2.7	6.1	15.7	3.9	5.5	15.7	1.1	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
FtsX	PF02687.21	gi|384433302|ref|YP_005642660.1|	-	3.7	8.1	7.0	1.2	9.6	2.7	2.4	2	0	0	2	2	2	0	FtsX-like	permease	family
BPD_transp_1	PF00528.22	gi|384433303|ref|YP_005642661.1|	-	3.3e-11	43.3	25.5	3.3e-11	43.3	25.5	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
UPF0697	PF15117.6	gi|384433303|ref|YP_005642661.1|	-	0.28	11.3	3.8	0.51	10.4	0.0	2.9	3	1	1	4	4	4	0	Uncharacterised	protein	family	UPF0697
BPD_transp_1	PF00528.22	gi|384433304|ref|YP_005642662.1|	-	6.2e-15	55.4	30.1	6.2e-15	55.4	30.1	2.6	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|384433305|ref|YP_005642663.1|	-	2.3e-32	112.4	0.0	3.8e-32	111.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
GlcV_C_terminal	PF17847.1	gi|384433305|ref|YP_005642663.1|	-	4.2e-29	100.8	0.9	8.9e-29	99.7	0.9	1.6	1	0	0	1	1	1	1	Glucose	ABC	transporter	C-terminal	domain
AAA_21	PF13304.6	gi|384433305|ref|YP_005642663.1|	-	1.4e-05	25.0	0.0	0.012	15.5	0.0	2.5	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SbcCD_C	PF13558.6	gi|384433305|ref|YP_005642663.1|	-	0.0096	16.1	0.1	0.063	13.5	0.1	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
OB_MalK	PF17912.1	gi|384433305|ref|YP_005642663.1|	-	0.012	16.5	0.2	0.03	15.2	0.2	1.8	1	0	0	1	1	1	0	MalK	OB	fold	domain
AAA	PF00004.29	gi|384433305|ref|YP_005642663.1|	-	0.063	13.7	0.0	3	8.3	0.0	2.6	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CysA_C_terminal	PF17850.1	gi|384433305|ref|YP_005642663.1|	-	0.085	13.4	0.0	0.19	12.4	0.0	1.6	1	0	0	1	1	1	0	CysA	C-terminal	regulatory	domain
Cyclase	PF04199.13	gi|384433306|ref|YP_005642664.1|	-	1.9e-22	80.0	0.0	2.8e-22	79.4	0.0	1.2	1	0	0	1	1	1	1	Putative	cyclase
DHDPS	PF00701.22	gi|384433307|ref|YP_005642665.1|	-	5.9e-59	199.2	0.0	7e-59	198.9	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Zip	PF02535.22	gi|384433308|ref|YP_005642666.1|	-	0.0062	15.8	19.1	0.023	14.0	1.7	3.1	2	1	1	3	3	3	3	ZIP	Zinc	transporter
DUF3917	PF13055.6	gi|384433308|ref|YP_005642666.1|	-	0.91	10.0	8.2	0.2	12.1	3.7	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3917)
SLATT_fungal	PF18142.1	gi|384433308|ref|YP_005642666.1|	-	7.6	6.6	6.2	0.61	10.1	0.9	1.9	2	1	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain
EamA	PF00892.20	gi|384433310|ref|YP_005642668.1|	-	1.9e-19	70.2	41.9	5.9e-14	52.4	13.4	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
TMEM239	PF15841.5	gi|384433310|ref|YP_005642668.1|	-	1.3	8.9	4.4	1.4	8.8	3.1	1.7	1	1	0	1	1	1	0	Transmembrane	protein	239	family
PIN	PF01850.21	gi|384433311|ref|YP_005642669.1|	-	6.9e-18	65.3	1.9	7.7e-18	65.2	1.9	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_9	PF18477.1	gi|384433311|ref|YP_005642669.1|	-	0.0013	19.1	0.5	0.017	15.4	0.5	2.0	1	1	0	1	1	1	1	PIN	like	domain
PIN_4	PF13638.6	gi|384433311|ref|YP_005642669.1|	-	0.029	14.7	0.3	0.039	14.2	0.3	1.4	1	1	0	1	1	1	0	PIN	domain
MazE_antitoxin	PF04014.18	gi|384433312|ref|YP_005642670.1|	-	1.1e-13	50.7	0.2	1.7e-13	50.2	0.2	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|384433312|ref|YP_005642670.1|	-	0.00051	20.4	0.1	0.00059	20.2	0.1	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
DUF3006	PF11213.8	gi|384433312|ref|YP_005642670.1|	-	0.0069	16.6	0.0	0.009	16.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
eIF-1a	PF01176.19	gi|384433312|ref|YP_005642670.1|	-	0.067	13.0	0.0	0.15	11.9	0.0	1.6	1	1	1	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
AbrB-like	PF14250.6	gi|384433312|ref|YP_005642670.1|	-	0.088	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
DUF4258	PF14076.6	gi|384433312|ref|YP_005642670.1|	-	0.11	12.9	1.4	11	6.5	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4258)
MFS_1	PF07690.16	gi|384433313|ref|YP_005642671.1|	-	3.3e-43	148.0	50.8	3.3e-43	148.0	50.8	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_4	PF06779.14	gi|384433313|ref|YP_005642671.1|	-	4.1e-11	42.8	30.7	7.5e-11	41.9	30.7	1.3	1	1	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
Sugar_tr	PF00083.24	gi|384433313|ref|YP_005642671.1|	-	2.9e-07	29.7	38.9	2.6e-06	26.6	38.8	2.3	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
HTH_10	PF04967.12	gi|384433314|ref|YP_005642672.1|	-	2e-22	78.7	0.1	4.1e-22	77.7	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|384433314|ref|YP_005642672.1|	-	0.0033	16.9	0.0	0.0093	15.5	0.0	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
Fe-S_biosyn	PF01521.20	gi|384433314|ref|YP_005642672.1|	-	0.0078	16.4	0.3	0.31	11.2	0.1	2.2	2	0	0	2	2	2	1	Iron-sulphur	cluster	biosynthesis
HTH_24	PF13412.6	gi|384433314|ref|YP_005642672.1|	-	0.021	14.4	2.1	0.13	11.9	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
BTB_3	PF16017.5	gi|384433314|ref|YP_005642672.1|	-	0.059	13.5	0.0	0.12	12.4	0.0	1.6	1	1	0	1	1	1	0	BTB/POZ	domain
Gram_pos_anchor	PF00746.21	gi|384433315|ref|YP_005642673.1|	-	0.01	15.8	0.5	0.03	14.3	0.0	1.9	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
CD20	PF04103.15	gi|384433315|ref|YP_005642673.1|	-	0.17	11.9	6.0	0.15	12.1	1.7	2.2	1	1	1	2	2	2	0	CD20-like	family
Saf_2TM	PF18303.1	gi|384433315|ref|YP_005642673.1|	-	0.19	11.3	0.3	0.19	11.3	0.3	2.0	1	1	0	2	2	2	0	SAVED-fused	2TM	effector	domain
DUF3188	PF11384.8	gi|384433315|ref|YP_005642673.1|	-	0.42	10.4	5.0	2	8.2	0.4	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3188)
DUF202	PF02656.15	gi|384433315|ref|YP_005642673.1|	-	0.73	10.3	2.9	13	6.3	2.9	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
CRPA	PF05745.11	gi|384433315|ref|YP_005642673.1|	-	0.91	9.5	3.9	2.9	7.9	0.6	2.1	2	0	0	2	2	2	0	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
DUF3096	PF11295.8	gi|384433315|ref|YP_005642673.1|	-	4.5	7.0	10.8	5.1	6.8	1.7	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3096)
DUF3185	PF11381.8	gi|384433315|ref|YP_005642673.1|	-	5.1	7.2	10.8	7.8	6.6	1.7	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3185)
Cytochrom_B558a	PF05038.13	gi|384433316|ref|YP_005642674.1|	-	0.0056	16.3	0.7	0.01	15.4	0.1	1.7	1	1	1	2	2	2	1	Cytochrome	Cytochrome	b558	alpha-subunit
ABC_tran	PF00005.27	gi|384433317|ref|YP_005642675.1|	-	7.7e-26	91.2	0.0	1.2e-25	90.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384433317|ref|YP_005642675.1|	-	1.1e-12	48.4	0.9	2.2e-07	31.0	0.2	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384433317|ref|YP_005642675.1|	-	1.4e-05	24.8	0.2	3.1e-05	23.6	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|384433317|ref|YP_005642675.1|	-	2.5e-05	24.0	0.0	3.8e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|384433317|ref|YP_005642675.1|	-	4.5e-05	23.3	1.7	0.00012	21.9	1.7	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|384433317|ref|YP_005642675.1|	-	0.00013	22.6	0.9	0.00025	21.6	0.4	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384433317|ref|YP_005642675.1|	-	0.0035	17.6	0.2	0.012	15.9	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|384433317|ref|YP_005642675.1|	-	0.0047	16.4	1.1	0.029	13.8	0.3	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
T2SSE	PF00437.20	gi|384433317|ref|YP_005642675.1|	-	0.0055	15.8	0.1	0.0091	15.1	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
ACT_7	PF13840.6	gi|384433317|ref|YP_005642675.1|	-	0.0057	16.4	0.0	0.023	14.5	0.0	2.1	1	0	0	1	1	1	1	ACT	domain
RsgA_GTPase	PF03193.16	gi|384433317|ref|YP_005642675.1|	-	0.007	16.3	0.2	0.02	14.8	0.2	1.7	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|384433317|ref|YP_005642675.1|	-	0.012	16.0	0.0	0.017	15.5	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|384433317|ref|YP_005642675.1|	-	0.034	13.8	0.0	0.063	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|384433317|ref|YP_005642675.1|	-	0.064	13.2	0.2	0.18	11.7	0.0	1.7	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA	PF00004.29	gi|384433317|ref|YP_005642675.1|	-	0.16	12.4	0.7	0.88	10.0	0.7	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_ATPase	PF09818.9	gi|384433317|ref|YP_005642675.1|	-	0.18	10.6	0.5	0.33	9.7	0.5	1.4	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_25	PF13481.6	gi|384433317|ref|YP_005642675.1|	-	0.18	11.4	0.1	1.4	8.4	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
DrsE_2	PF13686.6	gi|384433318|ref|YP_005642676.1|	-	3e-12	46.7	0.5	3.2e-05	23.9	0.1	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|384433318|ref|YP_005642676.1|	-	6.8e-08	32.9	0.0	8.3e-08	32.6	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
NCD1	PF04904.13	gi|384433318|ref|YP_005642676.1|	-	0.014	15.4	0.0	0.027	14.5	0.0	1.6	1	0	0	1	1	1	0	NAB	conserved	region	1	(NCD1)
Sulf_transp	PF04143.14	gi|384433320|ref|YP_005642678.1|	-	2.7e-67	227.5	23.1	3.8e-67	227.1	23.1	1.2	1	0	0	1	1	1	1	Sulphur	transport
DUF2231	PF09990.9	gi|384433320|ref|YP_005642678.1|	-	0.28	11.6	7.4	0.44	11.0	4.5	2.8	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
TusA	PF01206.17	gi|384433321|ref|YP_005642679.1|	-	3.5e-19	68.4	0.1	4e-19	68.2	0.1	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|384433321|ref|YP_005642679.1|	-	0.00044	20.1	0.0	0.00066	19.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DrsE	PF02635.15	gi|384433322|ref|YP_005642680.1|	-	2e-05	24.9	0.0	2.1e-05	24.9	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Coronavirus_5	PF05528.11	gi|384433322|ref|YP_005642680.1|	-	0.15	12.1	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Coronavirus	gene	5	protein
LA-virus_coat	PF09220.10	gi|384433323|ref|YP_005642681.1|	-	0.14	10.7	0.0	0.16	10.5	0.0	1.1	1	0	0	1	1	1	0	L-A	virus,	major	coat	protein
TusA	PF01206.17	gi|384433324|ref|YP_005642682.1|	-	1.9e-14	53.3	0.1	6.1e-14	51.6	0.1	1.9	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF417	PF04224.12	gi|384433324|ref|YP_005642682.1|	-	0.038	13.5	0.0	0.061	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
Sec16_C	PF12931.7	gi|384433324|ref|YP_005642682.1|	-	0.071	12.8	0.1	0.27	10.9	0.0	1.8	2	0	0	2	2	2	0	Sec23-binding	domain	of	Sec16
SF3A3	PF16837.5	gi|384433324|ref|YP_005642682.1|	-	3.9	8.0	15.3	2.3	8.8	3.3	3.5	3	1	0	3	3	3	0	Pre-mRNA-splicing	factor	SF3A3,	of	SF3a	complex,	Prp9
Lactonase	PF10282.9	gi|384433325|ref|YP_005642683.1|	-	9.2e-05	21.8	0.0	0.064	12.5	0.0	2.6	1	1	1	2	2	2	2	Lactonase,	7-bladed	beta-propeller
ANAPC4_WD40	PF12894.7	gi|384433325|ref|YP_005642683.1|	-	0.081	13.2	0.0	4.9	7.5	0.0	3.2	1	1	1	2	2	2	0	Anaphase-promoting	complex	subunit	4	WD40	domain
DUF3997	PF13162.6	gi|384433325|ref|YP_005642683.1|	-	0.13	12.5	0.2	11	6.4	0.1	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3997)
DUF2371	PF10177.9	gi|384433325|ref|YP_005642683.1|	-	0.15	12.2	0.3	0.36	11.0	0.3	1.5	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2371)
DUF4307	PF14155.6	gi|384433325|ref|YP_005642683.1|	-	0.16	11.8	0.1	0.3	10.9	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
Peptidase_M56	PF05569.11	gi|384433325|ref|YP_005642683.1|	-	0.18	11.0	0.2	0.26	10.4	0.2	1.2	1	0	0	1	1	1	0	BlaR1	peptidase	M56
DoxD	PF04173.13	gi|384433327|ref|YP_005642685.1|	-	2.9e-62	209.5	14.8	3.2e-62	209.3	14.8	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.12	gi|384433327|ref|YP_005642685.1|	-	3.3e-09	37.2	4.4	6.7e-09	36.2	4.4	1.5	1	0	0	1	1	1	1	DoxX
DoxX_3	PF13781.6	gi|384433327|ref|YP_005642685.1|	-	0.55	10.9	8.5	0.76	10.4	3.4	2.7	2	1	0	2	2	2	0	DoxX-like	family
ABC_tran	PF00005.27	gi|384433329|ref|YP_005642687.1|	-	6.6e-14	52.6	0.0	1.3e-13	51.7	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
MMR_HSR1	PF01926.23	gi|384433329|ref|YP_005642687.1|	-	0.0017	18.4	0.0	0.0026	17.8	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_14	PF13173.6	gi|384433329|ref|YP_005642687.1|	-	0.021	14.8	0.1	0.11	12.5	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
HTH_10	PF04967.12	gi|384433331|ref|YP_005642689.1|	-	2.9e-21	75.0	0.0	4.6e-21	74.4	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|384433331|ref|YP_005642689.1|	-	3.6e-06	26.4	0.0	1.6e-05	24.3	0.0	2.1	1	1	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|384433331|ref|YP_005642689.1|	-	0.012	15.4	0.0	0.029	14.3	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF4449	PF14613.6	gi|384433331|ref|YP_005642689.1|	-	0.013	15.6	0.2	0.021	14.9	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4449)
Peroxin-22	PF12827.7	gi|384433331|ref|YP_005642689.1|	-	0.024	14.5	0.4	0.08	12.9	0.4	2.0	1	1	0	1	1	1	0	Peroxisomal	biogenesis	protein	family
NusA_N	PF08529.11	gi|384433331|ref|YP_005642689.1|	-	0.025	14.9	0.1	0.086	13.2	0.1	1.9	1	0	0	1	1	1	0	NusA	N-terminal	domain
HTH_5	PF01022.20	gi|384433331|ref|YP_005642689.1|	-	0.03	14.2	0.0	1.2	9.0	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|384433331|ref|YP_005642689.1|	-	0.051	13.1	1.1	0.39	10.3	0.0	2.9	2	1	1	3	3	3	0	Winged	helix-turn-helix	DNA-binding
SKA2	PF16740.5	gi|384433331|ref|YP_005642689.1|	-	0.059	13.2	0.1	2.6	7.8	0.0	2.4	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	2
HTH_23	PF13384.6	gi|384433331|ref|YP_005642689.1|	-	0.075	12.9	0.0	9.1	6.2	0.1	2.7	2	0	0	2	2	2	0	Homeodomain-like	domain
GntR	PF00392.21	gi|384433331|ref|YP_005642689.1|	-	0.1	12.3	0.0	0.58	9.8	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
MnmE_helical	PF12631.7	gi|384433331|ref|YP_005642689.1|	-	0.11	12.7	0.3	0.14	12.3	0.3	1.2	1	0	0	1	1	1	0	MnmE	helical	domain
Phage_holin_3_6	PF07332.11	gi|384433332|ref|YP_005642690.1|	-	0.038	14.0	0.2	0.038	14.0	0.2	3.5	2	1	1	3	3	3	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
TMEM154	PF15102.6	gi|384433333|ref|YP_005642691.1|	-	0.0024	17.8	11.0	0.0057	16.6	11.0	1.6	1	0	0	1	1	1	1	TMEM154	protein	family
Stevor	PF17410.2	gi|384433333|ref|YP_005642691.1|	-	0.027	14.0	4.1	0.07	12.7	4.1	1.7	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
DUF5383	PF17355.2	gi|384433333|ref|YP_005642691.1|	-	0.031	14.6	1.2	0.064	13.6	1.2	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5383)
RIFIN	PF02009.16	gi|384433333|ref|YP_005642691.1|	-	0.054	13.4	8.6	0.096	12.6	8.6	1.4	1	0	0	1	1	1	0	Rifin
Orthoreo_P10	PF07204.11	gi|384433333|ref|YP_005642691.1|	-	0.082	12.9	1.3	0.45	10.5	1.5	2.1	2	0	0	2	2	2	0	Orthoreovirus	membrane	fusion	protein	p10
UL45	PF05473.12	gi|384433333|ref|YP_005642691.1|	-	0.14	11.8	4.4	0.29	10.8	4.4	1.5	1	0	0	1	1	1	0	UL45	protein,	carbohydrate-binding	C-type	lectin-like
DUF1180	PF06679.12	gi|384433333|ref|YP_005642691.1|	-	9.6	6.6	8.6	5.7	7.3	4.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1180)
PA14	PF07691.12	gi|384433334|ref|YP_005642692.1|	-	0.019	14.8	1.8	0.031	14.1	1.8	1.3	1	0	0	1	1	1	0	PA14	domain
SSP160	PF06933.11	gi|384433334|ref|YP_005642692.1|	-	6.1	4.9	14.3	11	4.1	14.3	1.3	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
Mucin	PF01456.17	gi|384433334|ref|YP_005642692.1|	-	6.2	6.8	17.5	10	6.1	17.5	1.3	1	0	0	1	1	1	0	Mucin-like	glycoprotein
DDE_Tnp_1	PF01609.21	gi|384433335|ref|YP_005642693.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
HTH_IclR	PF09339.10	gi|384433336|ref|YP_005642694.1|	-	1e-09	38.1	0.0	1.7e-09	37.3	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|384433336|ref|YP_005642694.1|	-	8.7e-07	28.7	0.0	1.7e-06	27.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|384433336|ref|YP_005642694.1|	-	9.9e-07	28.6	0.3	2.3e-06	27.4	0.3	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|384433336|ref|YP_005642694.1|	-	7.5e-06	25.4	0.0	1.7e-05	24.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|384433336|ref|YP_005642694.1|	-	1.4e-05	25.5	0.2	2.6e-05	24.6	0.2	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|384433336|ref|YP_005642694.1|	-	0.0013	18.6	0.0	0.0027	17.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|384433336|ref|YP_005642694.1|	-	0.0019	18.2	0.0	0.0032	17.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|384433336|ref|YP_005642694.1|	-	0.023	14.6	0.0	0.066	13.1	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|384433336|ref|YP_005642694.1|	-	0.045	13.7	0.0	0.14	12.1	0.0	1.8	1	0	0	1	1	1	0	MarR	family
Na_H_antiport_2	PF13726.6	gi|384433336|ref|YP_005642694.1|	-	0.051	13.7	0.2	0.59	10.3	0.0	2.5	2	1	1	3	3	3	0	Na+-H+	antiporter	family
HTH_28	PF13518.6	gi|384433336|ref|YP_005642694.1|	-	0.14	12.3	0.0	0.27	11.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|384433336|ref|YP_005642694.1|	-	0.17	11.7	0.0	0.31	10.9	0.0	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Cadherin_5	PF17892.1	gi|384433337|ref|YP_005642695.1|	-	0.08	12.9	1.9	0.23	11.5	0.3	2.3	1	1	1	2	2	2	0	Cadherin-like	domain
Big_9	PF17963.1	gi|384433337|ref|YP_005642695.1|	-	1.4	9.7	8.3	0.49	11.2	2.3	2.6	1	1	2	3	3	3	0	Bacterial	Ig	domain
Peptidase_M32	PF02074.15	gi|384433338|ref|YP_005642696.1|	-	3.4e-146	487.9	0.2	3.8e-146	487.7	0.2	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
ILVD_EDD	PF00920.21	gi|384433339|ref|YP_005642697.1|	-	4.7e-206	685.4	1.0	5.3e-206	685.2	1.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
MttA_Hcf106	PF02416.16	gi|384433340|ref|YP_005642698.1|	-	4.4e-13	48.3	1.0	5.9e-13	47.9	1.0	1.4	1	1	0	1	1	1	1	mttA/Hcf106	family
Lectin_N	PF03954.14	gi|384433340|ref|YP_005642698.1|	-	0.0052	16.5	0.6	0.007	16.1	0.6	1.1	1	0	0	1	1	1	1	Hepatic	lectin,	N-terminal	domain
DUF724	PF05266.14	gi|384433340|ref|YP_005642698.1|	-	0.011	15.5	5.8	0.013	15.3	5.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF4834	PF16118.5	gi|384433340|ref|YP_005642698.1|	-	0.025	15.5	0.3	0.031	15.2	0.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
DUF4446	PF14584.6	gi|384433340|ref|YP_005642698.1|	-	0.027	14.4	1.0	0.037	14.0	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
DUF4094	PF13334.6	gi|384433340|ref|YP_005642698.1|	-	0.027	14.9	0.2	0.031	14.7	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
FAM76	PF16046.5	gi|384433340|ref|YP_005642698.1|	-	0.085	12.2	3.4	0.092	12.1	3.4	1.0	1	0	0	1	1	1	0	FAM76	protein
DUF3573	PF12097.8	gi|384433340|ref|YP_005642698.1|	-	0.21	10.4	0.1	0.21	10.4	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
Ribosomal_L29	PF00831.23	gi|384433340|ref|YP_005642698.1|	-	0.26	11.3	6.2	0.11	12.5	3.8	1.6	2	0	0	2	2	2	0	Ribosomal	L29	protein
G_path_suppress	PF15991.5	gi|384433340|ref|YP_005642698.1|	-	0.78	9.8	8.9	0.89	9.6	8.9	1.0	1	0	0	1	1	1	0	G-protein	pathway	suppressor
bZIP_2	PF07716.15	gi|384433340|ref|YP_005642698.1|	-	2.2	8.4	8.3	0.37	10.9	3.0	1.9	2	0	0	2	2	2	0	Basic	region	leucine	zipper
Synaptobrevin	PF00957.21	gi|384433340|ref|YP_005642698.1|	-	8.2	6.3	11.9	0.37	10.6	3.2	2.1	2	0	0	2	2	2	0	Synaptobrevin
TatC	PF00902.18	gi|384433341|ref|YP_005642699.1|	-	5.2e-43	147.3	16.9	7e-43	146.9	16.9	1.2	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
OST3_OST6	PF04756.13	gi|384433341|ref|YP_005642699.1|	-	0.89	8.8	0.0	0.89	8.8	0.0	2.9	2	1	1	3	3	3	0	OST3	/	OST6	family,	transporter	family
Methyltransf_24	PF13578.6	gi|384433342|ref|YP_005642700.1|	-	1.6e-12	48.4	0.0	2.4e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.12	gi|384433342|ref|YP_005642700.1|	-	0.002	17.9	0.0	0.0037	17.0	0.0	1.4	1	1	0	1	1	1	1	Cephalosporin	hydroxylase
DUF4830	PF16112.5	gi|384433342|ref|YP_005642700.1|	-	0.03	14.8	0.2	0.46	11.0	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4830)
SPC22	PF04573.12	gi|384433342|ref|YP_005642700.1|	-	0.097	12.2	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Signal	peptidase	subunit
DUF998	PF06197.13	gi|384433343|ref|YP_005642701.1|	-	1.3e-20	73.8	9.6	1.7e-20	73.4	9.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
DUF4064	PF13273.6	gi|384433343|ref|YP_005642701.1|	-	0.45	10.8	17.9	0.4	11.0	4.6	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF35_N	PF12172.8	gi|384433345|ref|YP_005642703.1|	-	2.6e-09	36.8	0.2	3.8e-09	36.2	0.2	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|384433345|ref|YP_005642703.1|	-	2.8e-05	24.0	0.0	5.7e-05	23.0	0.0	1.5	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
TackOD1	PF18551.1	gi|384433345|ref|YP_005642703.1|	-	0.00045	19.9	0.2	0.00063	19.5	0.2	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
HypA	PF01155.19	gi|384433345|ref|YP_005642703.1|	-	0.00095	19.2	0.1	0.0021	18.1	0.1	1.5	2	0	0	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|384433345|ref|YP_005642703.1|	-	0.0098	15.9	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	1	zinc-ribbons
NOB1_Zn_bind	PF08772.11	gi|384433345|ref|YP_005642703.1|	-	0.03	14.5	0.4	0.06	13.5	0.4	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
TRAM	PF01938.20	gi|384433345|ref|YP_005642703.1|	-	0.12	12.4	0.1	0.18	11.9	0.1	1.3	1	0	0	1	1	1	0	TRAM	domain
FdhE	PF04216.12	gi|384433345|ref|YP_005642703.1|	-	0.23	11.3	0.2	0.31	10.9	0.2	1.1	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
Thiolase_N	PF00108.23	gi|384433346|ref|YP_005642704.1|	-	8.1e-05	22.1	0.0	0.00012	21.6	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384433346|ref|YP_005642704.1|	-	0.001	18.7	0.3	0.0026	17.4	0.0	1.8	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
adh_short_C2	PF13561.6	gi|384433347|ref|YP_005642705.1|	-	3e-65	220.0	0.4	3.5e-65	219.8	0.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384433347|ref|YP_005642705.1|	-	1.5e-57	194.2	1.3	1.9e-57	193.9	1.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384433347|ref|YP_005642705.1|	-	7.1e-14	52.1	0.1	1.1e-13	51.5	0.1	1.2	1	0	0	1	1	1	1	KR	domain
TPR_8	PF13181.6	gi|384433347|ref|YP_005642705.1|	-	0.01	16.0	0.0	0.025	14.8	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
3HCDH_N	PF02737.18	gi|384433347|ref|YP_005642705.1|	-	0.019	14.9	0.1	0.042	13.7	0.1	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|384433347|ref|YP_005642705.1|	-	0.053	13.0	0.5	0.4	10.1	0.5	2.1	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Ribosomal_S13	PF00416.22	gi|384433347|ref|YP_005642705.1|	-	0.075	13.4	0.2	4.1	7.8	0.0	2.3	1	1	1	2	2	2	0	Ribosomal	protein	S13/S18
TPR_1	PF00515.28	gi|384433347|ref|YP_005642705.1|	-	0.15	11.9	0.0	0.35	10.8	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Abhydrolase_1	PF00561.20	gi|384433348|ref|YP_005642706.1|	-	2.2e-24	86.5	0.0	5.4e-24	85.2	0.0	1.6	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|384433348|ref|YP_005642706.1|	-	1.5e-19	70.3	0.0	2.9e-15	56.2	0.0	2.0	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_6	PF12697.7	gi|384433348|ref|YP_005642706.1|	-	6.9e-16	59.5	0.0	9.3e-16	59.1	0.0	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|384433348|ref|YP_005642706.1|	-	6.6e-06	25.8	0.0	0.0097	15.4	0.0	2.2	2	0	0	2	2	2	2	Prolyl	oligopeptidase	family
Abhydrolase_2	PF02230.16	gi|384433348|ref|YP_005642706.1|	-	1.3e-05	25.1	0.0	5.2e-05	23.1	0.0	1.8	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
Peptidase_S15	PF02129.18	gi|384433348|ref|YP_005642706.1|	-	0.00048	19.8	0.0	0.093	12.3	0.0	2.1	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Lipase_3	PF01764.25	gi|384433348|ref|YP_005642706.1|	-	0.00065	19.6	0.0	0.002	18.0	0.0	1.7	1	1	0	1	1	1	1	Lipase	(class	3)
Thioesterase	PF00975.20	gi|384433348|ref|YP_005642706.1|	-	0.0036	17.5	0.0	0.0049	17.0	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	domain
PGAP1	PF07819.13	gi|384433348|ref|YP_005642706.1|	-	0.014	15.1	0.0	0.035	13.8	0.0	1.7	2	0	0	2	2	2	0	PGAP1-like	protein
Abhydrolase_3	PF07859.13	gi|384433348|ref|YP_005642706.1|	-	0.017	15.0	0.0	0.032	14.1	0.0	1.4	1	0	0	1	1	1	0	alpha/beta	hydrolase	fold
PAF-AH_p_II	PF03403.13	gi|384433348|ref|YP_005642706.1|	-	0.035	12.6	0.0	0.06	11.8	0.0	1.3	1	0	0	1	1	1	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Peptidase_S28	PF05577.12	gi|384433348|ref|YP_005642706.1|	-	0.039	12.7	0.0	0.059	12.2	0.0	1.2	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
DUF1057	PF06342.12	gi|384433348|ref|YP_005642706.1|	-	0.064	12.3	1.1	0.11	11.6	0.1	1.8	2	1	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Chlorophyllase	PF07224.11	gi|384433348|ref|YP_005642706.1|	-	0.064	12.3	0.0	0.087	11.8	0.0	1.2	1	0	0	1	1	1	0	Chlorophyllase
DUF1749	PF08538.10	gi|384433348|ref|YP_005642706.1|	-	0.067	12.3	0.0	0.14	11.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1749)
DLH	PF01738.18	gi|384433348|ref|YP_005642706.1|	-	0.076	12.6	0.0	1.1	8.8	0.0	2.1	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Esterase	PF00756.20	gi|384433348|ref|YP_005642706.1|	-	0.079	12.6	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	Putative	esterase
BAAT_C	PF08840.11	gi|384433348|ref|YP_005642706.1|	-	0.097	12.6	0.0	0.18	11.7	0.0	1.6	1	1	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Chlorophyllase2	PF12740.7	gi|384433348|ref|YP_005642706.1|	-	0.11	11.3	0.0	0.18	10.7	0.0	1.2	1	0	0	1	1	1	0	Chlorophyllase	enzyme
Abhydrolase_8	PF06259.12	gi|384433348|ref|YP_005642706.1|	-	0.16	11.6	0.0	0.25	10.9	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase
Aldedh	PF00171.22	gi|384433349|ref|YP_005642707.1|	-	5.9e-166	552.5	0.0	6.6e-166	552.4	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|384433349|ref|YP_005642707.1|	-	0.0025	16.9	0.0	0.01	14.9	0.0	1.8	2	0	0	2	2	2	1	Acyl-CoA	reductase	(LuxC)
FAA_hydrolase	PF01557.18	gi|384433350|ref|YP_005642708.1|	-	2.4e-23	83.0	0.0	1.5e-22	80.4	0.0	1.9	1	1	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|384433350|ref|YP_005642708.1|	-	0.17	12.8	0.0	0.37	11.7	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2437)
MFS_1	PF07690.16	gi|384433351|ref|YP_005642709.1|	-	3.7e-22	78.7	82.2	3.2e-20	72.4	47.6	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384433351|ref|YP_005642709.1|	-	1.3e-20	73.7	24.7	1.7e-20	73.3	24.7	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
SLATT_6	PF18169.1	gi|384433351|ref|YP_005642709.1|	-	8.3	6.0	10.3	1.4	8.5	0.4	2.8	3	1	0	3	3	3	0	SMODS	and	SLOG-associating	2TM	effector	domain	6
Cdd1	PF11731.8	gi|384433352|ref|YP_005642710.1|	-	0.11	12.7	0.0	0.34	11.2	0.0	1.8	1	0	0	1	1	1	0	Pathogenicity	locus
MR_MLE_C	PF13378.6	gi|384433353|ref|YP_005642711.1|	-	1e-63	214.9	0.0	8e-63	211.9	0.0	1.9	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|384433353|ref|YP_005642711.1|	-	1.3e-19	70.5	0.0	2.7e-19	69.5	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
HD	PF01966.22	gi|384433354|ref|YP_005642712.1|	-	4.7e-12	46.2	0.1	1.3e-11	44.7	0.1	1.8	1	0	0	1	1	1	1	HD	domain
HDOD	PF08668.12	gi|384433354|ref|YP_005642712.1|	-	0.029	13.9	0.0	0.053	13.0	0.0	1.4	1	0	0	1	1	1	0	HDOD	domain
Raffinose_syn	PF05691.12	gi|384433355|ref|YP_005642713.1|	-	1.5e-46	158.6	3.8	3.7e-26	91.2	1.1	3.1	1	1	1	2	2	2	2	Raffinose	synthase	or	seed	imbibition	protein	Sip1
Melibiase	PF02065.18	gi|384433355|ref|YP_005642713.1|	-	0.00013	21.1	0.6	0.00022	20.3	0.6	1.3	1	0	0	1	1	1	1	Melibiase
Melibiase_2	PF16499.5	gi|384433355|ref|YP_005642713.1|	-	0.00015	21.0	0.0	0.00027	20.2	0.0	1.3	1	0	0	1	1	1	1	Alpha	galactosidase	A
PIN	PF01850.21	gi|384433356|ref|YP_005642714.1|	-	1.1e-17	64.7	0.9	1.2e-17	64.5	0.9	1.0	1	0	0	1	1	1	1	PIN	domain
DUF4411	PF14367.6	gi|384433356|ref|YP_005642714.1|	-	3.4e-06	27.1	0.2	4.6e-06	26.6	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4411)
MazE_antitoxin	PF04014.18	gi|384433357|ref|YP_005642715.1|	-	2.7e-13	49.5	2.3	4.5e-13	48.8	2.3	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
CDC48_N	PF02359.18	gi|384433357|ref|YP_005642715.1|	-	0.0091	16.1	0.1	0.015	15.4	0.1	1.4	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Thump_like	PF18096.1	gi|384433357|ref|YP_005642715.1|	-	0.053	13.4	0.2	0.095	12.6	0.2	1.4	1	0	0	1	1	1	0	THUMP	domain-like
AbrB-like	PF14250.6	gi|384433357|ref|YP_005642715.1|	-	0.1	12.7	0.0	0.17	12.0	0.0	1.3	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
DUF1905	PF08922.11	gi|384433357|ref|YP_005642715.1|	-	0.12	12.5	1.1	0.42	10.7	0.2	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1905)
MFS_1	PF07690.16	gi|384433358|ref|YP_005642716.1|	-	1.9e-42	145.4	48.9	1.9e-42	145.4	48.9	2.6	1	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384433358|ref|YP_005642716.1|	-	2.7e-09	36.4	7.4	2.7e-09	36.4	7.4	2.9	3	1	0	3	3	3	2	Sugar	(and	other)	transporter
MFS_2	PF13347.6	gi|384433358|ref|YP_005642716.1|	-	0.0037	15.9	6.8	0.0037	15.9	6.8	3.8	2	1	1	4	4	4	1	MFS/sugar	transport	protein
LUD_dom	PF02589.15	gi|384433359|ref|YP_005642717.1|	-	3.3e-51	173.7	0.1	5e-51	173.1	0.1	1.3	1	0	0	1	1	1	1	LUD	domain
Fer4_8	PF13183.6	gi|384433359|ref|YP_005642717.1|	-	2.9e-11	43.6	0.7	5e-11	42.9	0.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433359|ref|YP_005642717.1|	-	1.9e-07	31.1	1.2	0.006	16.7	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384433359|ref|YP_005642717.1|	-	5.2e-07	30.1	2.0	1.5e-06	28.6	2.2	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433359|ref|YP_005642717.1|	-	1.1e-05	25.9	2.1	2.4e-05	24.8	2.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384433359|ref|YP_005642717.1|	-	8.8e-05	22.6	0.3	0.081	13.1	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|384433359|ref|YP_005642717.1|	-	0.00063	19.5	1.4	0.094	12.5	0.1	2.3	2	0	0	2	2	2	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_2	PF12797.7	gi|384433359|ref|YP_005642717.1|	-	0.0019	18.2	7.9	0.11	12.6	2.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|384433359|ref|YP_005642717.1|	-	0.003	17.3	8.7	0.0086	15.9	1.8	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|384433359|ref|YP_005642717.1|	-	0.013	15.5	7.6	0.014	15.4	1.5	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433359|ref|YP_005642717.1|	-	0.14	12.3	5.3	0.21	11.7	0.6	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384433359|ref|YP_005642717.1|	-	0.2	11.9	0.8	5	7.4	0.0	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384433359|ref|YP_005642717.1|	-	0.23	12.4	8.7	6.4	7.8	9.0	2.3	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|384433359|ref|YP_005642717.1|	-	0.35	11.7	3.8	1.4	9.9	0.7	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384433359|ref|YP_005642717.1|	-	1.7	9.3	7.0	1.1	9.9	1.3	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
CCG	PF02754.16	gi|384433360|ref|YP_005642718.1|	-	1e-10	41.7	0.0	2.7e-07	30.7	0.1	3.0	3	0	0	3	3	3	2	Cysteine-rich	domain
Isochorismatase	PF00857.20	gi|384433360|ref|YP_005642718.1|	-	0.11	12.6	0.0	0.21	11.8	0.0	1.3	1	0	0	1	1	1	0	Isochorismatase	family
Lactamase_B	PF00753.27	gi|384433361|ref|YP_005642719.1|	-	5.5e-29	101.6	0.0	6.5e-29	101.4	0.0	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384433361|ref|YP_005642719.1|	-	6.3e-05	22.6	0.0	8.4e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Vps53_N	PF04100.12	gi|384433362|ref|YP_005642720.1|	-	0.027	13.5	1.2	0.028	13.4	1.2	1.1	1	0	0	1	1	1	0	Vps53-like,	N-terminal
YokU	PF14122.6	gi|384433362|ref|YP_005642720.1|	-	0.032	14.2	1.7	0.038	14.0	1.7	1.2	1	0	0	1	1	1	0	YokU-like	protein,	putative	antitoxin
PRP9_N	PF16958.5	gi|384433362|ref|YP_005642720.1|	-	0.038	14.0	1.0	0.049	13.6	1.0	1.2	1	1	0	1	1	1	0	Pre-mRNA-splicing	factor	PRP9	N-terminus
MT0933_antitox	PF14013.6	gi|384433362|ref|YP_005642720.1|	-	0.09	13.1	1.2	0.58	10.5	0.0	2.3	2	1	0	2	2	2	0	MT0933-like	antitoxin	protein
DUF883	PF05957.13	gi|384433362|ref|YP_005642720.1|	-	0.091	13.4	0.5	0.13	12.9	0.5	1.4	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
Laminin_II	PF06009.12	gi|384433362|ref|YP_005642720.1|	-	0.13	12.3	2.3	0.24	11.4	2.3	1.5	1	1	0	1	1	1	0	Laminin	Domain	II
CAP_N	PF01213.19	gi|384433362|ref|YP_005642720.1|	-	0.13	11.7	0.3	0.14	11.6	0.3	1.0	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
RNase_J_C	PF17770.1	gi|384433362|ref|YP_005642720.1|	-	0.23	12.6	1.9	1	10.4	1.4	1.8	1	1	1	2	2	2	0	Ribonuclease	J	C-terminal	domain
Bac_DNA_binding	PF00216.21	gi|384433362|ref|YP_005642720.1|	-	0.23	11.7	2.2	0.32	11.2	0.9	1.7	2	0	0	2	2	2	0	Bacterial	DNA-binding	protein
SpmSyn_N	PF17950.1	gi|384433362|ref|YP_005642720.1|	-	0.43	10.8	3.4	0.52	10.5	0.5	2.2	1	1	2	3	3	3	0	S-adenosylmethionine	decarboxylase	N	-terminal
MaoC_dehydratas	PF01575.19	gi|384433363|ref|YP_005642721.1|	-	1.5e-15	56.8	0.0	2.1e-15	56.4	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
4HBT	PF03061.22	gi|384433363|ref|YP_005642721.1|	-	0.002	18.4	0.0	0.0034	17.7	0.0	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
MaoC_dehydrat_N	PF13452.6	gi|384433363|ref|YP_005642721.1|	-	0.0054	16.9	0.0	0.014	15.5	0.0	1.6	2	0	0	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
FabA	PF07977.13	gi|384433363|ref|YP_005642721.1|	-	0.0056	16.3	0.0	0.011	15.3	0.0	1.5	1	1	1	2	2	2	1	FabA-like	domain
RIFIN	PF02009.16	gi|384433364|ref|YP_005642722.1|	-	3.3	7.5	3.9	3.9	7.3	3.9	1.1	1	0	0	1	1	1	0	Rifin
DUF1349	PF07081.11	gi|384433365|ref|YP_005642723.1|	-	0.11	12.2	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1349)
Wzz	PF02706.15	gi|384433366|ref|YP_005642724.1|	-	0.041	14.2	1.9	0.061	13.6	0.2	2.2	2	0	0	2	2	2	0	Chain	length	determinant	protein
Cu_amine_oxidN1	PF07833.11	gi|384433366|ref|YP_005642724.1|	-	0.049	14.1	3.1	0.23	12.0	0.1	3.1	3	0	0	3	3	3	0	Copper	amine	oxidase	N-terminal	domain
Neil1-DNA_bind	PF09292.10	gi|384433366|ref|YP_005642724.1|	-	0.12	12.4	0.2	0.74	9.8	0.0	2.3	2	0	0	2	2	2	0	Endonuclease	VIII-like	1,	DNA	bind
End_beta_barrel	PF12195.8	gi|384433366|ref|YP_005642724.1|	-	0.28	11.2	2.9	1.4	8.9	0.1	2.7	2	0	0	2	2	2	0	Beta	barrel	domain	of	bacteriophage	endosialidase
Class_IIIsignal	PF04021.12	gi|384433367|ref|YP_005642725.1|	-	0.77	9.8	6.1	1.7	8.7	6.1	1.7	1	0	0	1	1	1	0	Class	III	signal	peptide
Staphylcoagulse	PF04022.12	gi|384433368|ref|YP_005642726.1|	-	0.56	9.8	5.5	0.19	11.3	0.4	2.8	2	0	0	2	2	2	0	Staphylocoagulase	repeat
Sugar_tr	PF00083.24	gi|384433369|ref|YP_005642727.1|	-	4.2e-36	124.8	24.1	4.9e-36	124.6	24.1	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384433369|ref|YP_005642727.1|	-	5.2e-31	107.9	46.9	1.6e-28	99.7	29.7	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PPR_1	PF12854.7	gi|384433369|ref|YP_005642727.1|	-	0.21	11.3	0.1	0.43	10.3	0.1	1.6	1	0	0	1	1	1	0	PPR	repeat
DUF3464	PF11947.8	gi|384433369|ref|YP_005642727.1|	-	0.29	10.9	0.8	0.69	9.6	0.8	1.6	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
CoA_transf_3	PF02515.17	gi|384433370|ref|YP_005642728.1|	-	2.6e-97	326.2	0.0	3.1e-97	326.0	0.0	1.1	1	0	0	1	1	1	1	CoA-transferase	family	III
Acyl-CoA_dh_1	PF00441.24	gi|384433371|ref|YP_005642729.1|	-	1.1e-27	97.1	0.0	1.5e-27	96.7	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|384433371|ref|YP_005642729.1|	-	5.5e-18	65.0	0.0	8.9e-18	64.3	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|384433371|ref|YP_005642729.1|	-	1.1e-10	41.9	0.0	1.7e-10	41.3	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|384433371|ref|YP_005642729.1|	-	1.9e-06	28.5	0.0	3.5e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
MFS_1	PF07690.16	gi|384433373|ref|YP_005642731.1|	-	3.5e-31	108.4	65.2	9.8e-24	83.9	36.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384433373|ref|YP_005642731.1|	-	1.6e-17	63.5	25.8	1.4e-10	40.7	2.5	2.2	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
TNFR_16_TM	PF18422.1	gi|384433373|ref|YP_005642731.1|	-	0.051	13.5	0.1	0.051	13.5	0.1	2.7	2	0	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
DUF4322	PF14210.6	gi|384433374|ref|YP_005642732.1|	-	8.9e-15	54.3	0.1	1.7e-14	53.4	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
Pyr_redox_2	PF07992.14	gi|384433376|ref|YP_005642734.1|	-	8.6e-42	143.4	0.6	1.3e-41	142.7	0.6	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384433376|ref|YP_005642734.1|	-	4.1e-16	59.3	7.3	7e-16	58.6	0.9	2.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384433376|ref|YP_005642734.1|	-	3.7e-10	39.6	0.7	3.7e-10	39.6	0.7	2.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384433376|ref|YP_005642734.1|	-	0.00093	18.9	5.8	0.18	11.4	0.0	3.5	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|384433376|ref|YP_005642734.1|	-	0.017	15.0	0.1	0.036	13.9	0.1	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384433376|ref|YP_005642734.1|	-	0.048	12.9	3.5	0.81	8.9	0.1	2.4	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|384433376|ref|YP_005642734.1|	-	0.088	12.8	0.0	0.25	11.3	0.0	1.9	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
HI0933_like	PF03486.14	gi|384433376|ref|YP_005642734.1|	-	0.14	10.9	8.0	2	7.0	0.3	3.9	3	1	1	4	4	4	0	HI0933-like	protein
GIDA	PF01134.22	gi|384433376|ref|YP_005642734.1|	-	1.3	8.1	8.5	13	4.7	0.1	3.2	2	1	1	3	3	3	0	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|384433376|ref|YP_005642734.1|	-	1.3	7.9	2.9	24	3.8	0.0	2.8	2	1	1	3	3	3	0	Lycopene	cyclase	protein
NAD_binding_8	PF13450.6	gi|384433376|ref|YP_005642734.1|	-	2.1	8.6	7.0	0.65	10.3	0.6	2.4	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
MFS_1	PF07690.16	gi|384433377|ref|YP_005642735.1|	-	1e-19	70.7	33.9	8.9e-12	44.6	12.0	2.4	2	1	0	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|384433377|ref|YP_005642735.1|	-	9e-07	28.1	9.0	3.1e-05	23.0	9.0	2.7	1	1	0	1	1	1	1	MFS_1	like	family
FPN1	PF06963.12	gi|384433377|ref|YP_005642735.1|	-	0.0031	16.1	6.9	0.73	8.3	1.2	3.2	3	0	0	3	3	3	2	Ferroportin1	(FPN1)
DUF981	PF06168.11	gi|384433378|ref|YP_005642736.1|	-	8.3e-55	185.6	25.5	9.3e-55	185.5	25.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF981)
DUF2427	PF10348.9	gi|384433378|ref|YP_005642736.1|	-	0.26	11.1	9.7	0.037	13.8	1.9	2.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF2427)
DDE_Tnp_1	PF01609.21	gi|384433380|ref|YP_005642738.1|	-	1.9e-16	60.3	0.0	2.5e-16	60.0	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Holin_SPP1	PF04688.13	gi|384433381|ref|YP_005642739.1|	-	0.2	11.8	3.0	0.71	10.1	3.0	1.8	1	1	0	1	1	1	0	SPP1	phage	holin
OrfB_Zn_ribbon	PF07282.11	gi|384433382|ref|YP_005642740.1|	-	1.7e-22	79.1	0.1	3.7e-22	78.0	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384433382|ref|YP_005642740.1|	-	2.7e-17	63.1	0.6	9.7e-17	61.3	0.0	2.1	2	1	0	2	2	2	1	Probable	transposase
FAM76	PF16046.5	gi|384433382|ref|YP_005642740.1|	-	0.012	14.9	0.6	0.032	13.6	0.6	1.6	1	0	0	1	1	1	0	FAM76	protein
Zn_Tnp_IS1595	PF12760.7	gi|384433382|ref|YP_005642740.1|	-	1.7	8.7	4.0	3.7	7.6	4.0	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384433382|ref|YP_005642740.1|	-	2.2	8.1	5.0	9.7	6.1	5.2	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Resolvase	PF00239.21	gi|384433383|ref|YP_005642741.1|	-	9.5e-20	71.2	0.1	1.4e-19	70.7	0.1	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384433383|ref|YP_005642741.1|	-	4.9e-12	45.8	0.1	9.8e-12	44.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384433383|ref|YP_005642741.1|	-	4.2e-09	36.4	0.2	8.3e-09	35.4	0.2	1.5	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384433383|ref|YP_005642741.1|	-	1.7e-06	27.6	0.0	3.3e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384433383|ref|YP_005642741.1|	-	0.00014	21.6	2.7	0.00016	21.5	0.0	2.3	3	0	0	3	3	3	1	MerR	HTH	family	regulatory	protein
AbiEi_4	PF13338.6	gi|384433383|ref|YP_005642741.1|	-	0.022	14.9	0.0	0.088	13.0	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_23	PF13384.6	gi|384433383|ref|YP_005642741.1|	-	0.029	14.2	0.0	0.086	12.7	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
CLP1_P	PF16575.5	gi|384433383|ref|YP_005642741.1|	-	0.067	13.0	0.1	0.13	12.1	0.0	1.5	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HTH_29	PF13551.6	gi|384433383|ref|YP_005642741.1|	-	0.081	13.0	0.0	0.23	11.5	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
FtsH_ext	PF06480.15	gi|384433383|ref|YP_005642741.1|	-	0.17	12.2	0.6	0.98	9.8	0.5	2.1	1	1	0	1	1	1	0	FtsH	Extracellular
FMN_red	PF03358.15	gi|384433384|ref|YP_005642742.1|	-	9.2e-17	61.2	0.0	1.3e-16	60.8	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_5	PF12724.7	gi|384433384|ref|YP_005642742.1|	-	5.2e-05	23.5	0.0	7.7e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_2	PF02525.17	gi|384433384|ref|YP_005642742.1|	-	0.00011	21.9	0.0	0.00015	21.5	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
BPL_LplA_LipB	PF03099.19	gi|384433385|ref|YP_005642743.1|	-	0.00014	21.8	0.0	0.00025	21.0	0.0	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Biotin_lipoyl	PF00364.22	gi|384433386|ref|YP_005642744.1|	-	2.8e-14	52.7	2.9	3.5e-14	52.4	2.9	1.1	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|384433386|ref|YP_005642744.1|	-	2.2e-11	43.4	2.5	5.1e-05	23.0	0.1	2.1	1	1	1	2	2	2	2	Biotin-lipoyl	like
RnfC_N	PF13375.6	gi|384433386|ref|YP_005642744.1|	-	3.9e-06	26.7	1.7	0.0007	19.5	0.3	1.9	1	1	1	2	2	2	2	RnfC	Barrel	sandwich	hybrid	domain
QRPTase_N	PF02749.16	gi|384433386|ref|YP_005642744.1|	-	8.9e-05	22.5	0.2	0.14	12.2	0.0	2.1	1	1	1	2	2	2	2	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PTS_EIIA_1	PF00358.20	gi|384433386|ref|YP_005642744.1|	-	0.00034	20.4	0.2	0.5	10.1	0.0	2.0	1	1	1	2	2	2	2	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
HlyD_D23	PF16576.5	gi|384433386|ref|YP_005642744.1|	-	0.0027	16.9	0.4	0.16	11.1	0.0	2.0	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
ATP-synt_ab_Xtn	PF16886.5	gi|384433386|ref|YP_005642744.1|	-	0.003	17.4	0.4	0.21	11.5	0.1	2.0	1	1	1	2	2	2	1	ATPsynthase	alpha/beta	subunit	N-term	extension
PASTA	PF03793.19	gi|384433386|ref|YP_005642744.1|	-	0.0053	16.6	1.5	0.46	10.4	0.1	2.2	2	0	0	2	2	2	1	PASTA	domain
Peptidase_M23	PF01551.22	gi|384433386|ref|YP_005642744.1|	-	0.0056	16.9	0.4	2.4	8.4	0.0	2.2	1	1	1	2	2	2	2	Peptidase	family	M23
GCV_H	PF01597.19	gi|384433386|ref|YP_005642744.1|	-	0.007	16.3	1.4	0.0098	15.8	1.3	1.4	1	1	1	2	2	2	1	Glycine	cleavage	H-protein
HlyD_3	PF13437.6	gi|384433386|ref|YP_005642744.1|	-	0.0075	17.0	0.6	5	7.9	0.1	2.2	2	0	0	2	2	2	2	HlyD	family	secretion	protein
YonK	PF09642.10	gi|384433386|ref|YP_005642744.1|	-	0.02	15.1	0.0	0.35	11.0	0.0	2.0	2	0	0	2	2	2	0	YonK	protein
DUF2118	PF09891.9	gi|384433386|ref|YP_005642744.1|	-	0.043	13.8	0.1	1.8	8.5	0.1	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
PYNP_C	PF07831.13	gi|384433386|ref|YP_005642744.1|	-	0.11	12.1	1.0	9.4	6.0	0.1	2.1	2	0	0	2	2	2	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Radical_SAM	PF04055.21	gi|384433387|ref|YP_005642745.1|	-	1.6e-17	64.4	0.2	8.1e-17	62.1	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
BPL_LplA_LipB	PF03099.19	gi|384433388|ref|YP_005642746.1|	-	3e-12	46.6	0.0	4.8e-12	45.9	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Fer4_17	PF13534.6	gi|384433389|ref|YP_005642747.1|	-	7.5e-11	42.4	6.6	2e-10	41.1	6.6	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433389|ref|YP_005642747.1|	-	8e-11	42.4	9.4	1.8e-10	41.2	9.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|384433389|ref|YP_005642747.1|	-	9.8e-11	41.7	6.2	4.3e-05	23.6	0.0	3.0	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|384433389|ref|YP_005642747.1|	-	7.6e-10	39.1	7.2	7.6e-10	39.1	7.2	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384433389|ref|YP_005642747.1|	-	2.6e-08	33.4	10.4	0.0005	19.8	1.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|384433389|ref|YP_005642747.1|	-	2.1e-06	27.7	9.5	6.8e-05	22.9	10.6	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384433389|ref|YP_005642747.1|	-	5.1e-06	26.3	13.6	0.0026	17.7	2.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384433389|ref|YP_005642747.1|	-	2.9e-05	24.2	8.7	0.00013	22.0	8.9	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433389|ref|YP_005642747.1|	-	0.00016	21.6	12.3	0.0099	15.9	1.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|384433389|ref|YP_005642747.1|	-	0.00045	21.1	10.3	0.019	15.9	10.5	2.8	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|384433389|ref|YP_005642747.1|	-	0.0013	19.1	11.5	0.062	13.8	2.1	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
DUF309	PF03745.14	gi|384433389|ref|YP_005642747.1|	-	0.029	14.0	0.0	0.065	12.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF309)
Fer4_21	PF14697.6	gi|384433389|ref|YP_005642747.1|	-	0.032	14.4	12.0	0.55	10.4	12.0	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384433389|ref|YP_005642747.1|	-	0.044	14.0	6.9	0.83	9.9	0.9	2.6	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|384433389|ref|YP_005642747.1|	-	0.074	12.8	4.6	0.17	11.6	0.2	2.7	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.7	gi|384433389|ref|YP_005642747.1|	-	0.12	13.4	17.6	0.89	10.6	4.7	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|384433389|ref|YP_005642747.1|	-	2.1	9.0	10.1	6.1	7.5	1.4	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|384433389|ref|YP_005642747.1|	-	3.3	8.5	7.0	2.7	8.8	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
FAD-oxidase_C	PF02913.19	gi|384433390|ref|YP_005642748.1|	-	2.7e-65	220.5	0.0	3.6e-65	220.1	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|384433390|ref|YP_005642748.1|	-	2.5e-33	114.7	0.0	6.6e-33	113.4	0.0	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_4	PF01565.23	gi|384433391|ref|YP_005642749.1|	-	1.4e-21	76.7	0.0	2.3e-21	76.0	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|384433391|ref|YP_005642749.1|	-	0.0047	16.6	0.0	0.0074	15.9	0.0	1.3	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
BBE	PF08031.12	gi|384433391|ref|YP_005642749.1|	-	0.0086	16.2	0.1	0.019	15.0	0.1	1.6	1	0	0	1	1	1	1	Berberine	and	berberine	like
Phage-A118_gp45	PF10653.9	gi|384433393|ref|YP_005642751.1|	-	0.092	12.8	0.8	5.1	7.2	0.1	3.2	3	0	0	3	3	3	0	Protein	gp45	of	Bacteriophage	A118
DUF4041	PF13250.6	gi|384433393|ref|YP_005642751.1|	-	0.22	11.4	2.2	8.3	6.4	0.1	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4041)
NUDIX	PF00293.28	gi|384433394|ref|YP_005642752.1|	-	3.9e-18	65.8	0.0	4.9e-18	65.4	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.6	gi|384433394|ref|YP_005642752.1|	-	0.0025	17.8	0.0	0.0037	17.2	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
zinc_ribbon_4	PF13717.6	gi|384433395|ref|YP_005642753.1|	-	0.00015	21.6	2.6	0.00028	20.7	2.6	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
UPF0547	PF10571.9	gi|384433395|ref|YP_005642753.1|	-	0.0002	21.4	4.0	0.0069	16.4	0.1	2.3	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|384433395|ref|YP_005642753.1|	-	0.0017	17.7	1.6	0.22	11.0	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384433395|ref|YP_005642753.1|	-	0.002	18.2	0.5	0.0036	17.4	0.5	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|384433395|ref|YP_005642753.1|	-	0.0026	17.4	0.3	0.0026	17.4	0.3	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
DZR	PF12773.7	gi|384433395|ref|YP_005642753.1|	-	0.0073	16.3	0.6	0.012	15.6	0.6	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF2387	PF09526.10	gi|384433395|ref|YP_005642753.1|	-	0.0078	16.3	0.2	0.008	16.3	0.2	1.2	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_2	PF13240.6	gi|384433395|ref|YP_005642753.1|	-	0.012	15.3	2.9	0.27	11.0	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|384433395|ref|YP_005642753.1|	-	0.013	15.4	2.1	0.031	14.2	1.9	1.8	1	1	0	1	1	1	0	Nudix	N-terminal
zf-H2C2_2	PF13465.6	gi|384433395|ref|YP_005642753.1|	-	0.017	15.5	2.4	1.7	9.2	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
IBR	PF01485.21	gi|384433395|ref|YP_005642753.1|	-	0.026	14.7	2.9	0.089	13.0	3.0	1.7	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_9	PF14369.6	gi|384433395|ref|YP_005642753.1|	-	0.026	14.8	2.6	0.081	13.2	2.7	1.7	1	1	1	2	2	2	0	zinc-ribbon
DUF2072	PF09845.9	gi|384433395|ref|YP_005642753.1|	-	0.038	14.2	0.3	0.046	14.0	0.3	1.1	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
zf-TFIIB	PF13453.6	gi|384433395|ref|YP_005642753.1|	-	0.039	13.3	1.8	0.097	12.0	1.8	1.7	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Glutaredoxin	PF00462.24	gi|384433395|ref|YP_005642753.1|	-	0.047	13.9	2.0	0.11	12.7	2.0	1.8	1	1	0	1	1	1	0	Glutaredoxin
zf-tcix	PF14952.6	gi|384433395|ref|YP_005642753.1|	-	0.047	13.3	0.1	0.047	13.3	0.1	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Elf1	PF05129.13	gi|384433395|ref|YP_005642753.1|	-	0.05	13.7	1.5	0.065	13.3	1.5	1.2	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Auto_anti-p27	PF06677.12	gi|384433395|ref|YP_005642753.1|	-	0.066	13.4	2.0	2	8.7	3.8	2.0	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
PADR1	PF08063.12	gi|384433395|ref|YP_005642753.1|	-	0.074	12.9	0.9	2.3	8.1	0.1	2.2	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
zf_UBZ	PF18439.1	gi|384433395|ref|YP_005642753.1|	-	0.099	12.3	1.1	1.7	8.3	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
ADK_lid	PF05191.14	gi|384433395|ref|YP_005642753.1|	-	0.1	12.6	5.0	0.3	11.1	4.4	1.9	1	1	1	2	2	2	0	Adenylate	kinase,	active	site	lid
Zn_Tnp_IS1595	PF12760.7	gi|384433395|ref|YP_005642753.1|	-	0.14	12.2	5.0	2.6	8.1	0.3	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|384433395|ref|YP_005642753.1|	-	0.15	12.4	3.9	3.1	8.1	0.2	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
DUF35_N	PF12172.8	gi|384433395|ref|YP_005642753.1|	-	0.16	11.9	1.8	7.1	6.6	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TF_Zn_Ribbon	PF08271.12	gi|384433395|ref|YP_005642753.1|	-	0.16	11.5	5.7	1	8.9	5.7	2.0	1	1	0	1	1	1	0	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|384433395|ref|YP_005642753.1|	-	0.21	11.5	2.1	0.5	10.3	1.8	1.7	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf_C2H2_10	PF18414.1	gi|384433395|ref|YP_005642753.1|	-	0.45	10.1	5.3	3.1	7.4	0.4	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger
DUF1610	PF07754.11	gi|384433395|ref|YP_005642753.1|	-	0.98	9.4	6.5	0.89	9.6	0.8	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-C2H2	PF00096.26	gi|384433395|ref|YP_005642753.1|	-	1.1	9.9	5.0	10	6.8	0.4	2.6	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
YhfH	PF14149.6	gi|384433395|ref|YP_005642753.1|	-	1.2	9.2	6.0	0.56	10.2	0.6	2.2	1	1	1	2	2	2	0	YhfH-like	protein
A2L_zn_ribbon	PF08792.10	gi|384433395|ref|YP_005642753.1|	-	3	7.7	7.2	2.5	7.9	2.6	2.9	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-ISL3	PF14690.6	gi|384433395|ref|YP_005642753.1|	-	4.2	8.1	8.2	6.6	7.5	0.9	2.6	2	1	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Integrase_Zn	PF02022.19	gi|384433395|ref|YP_005642753.1|	-	4.6	7.3	5.7	6.4	6.8	0.2	2.2	2	0	0	2	2	2	0	Integrase	Zinc	binding	domain
Zn-C2H2_12	PF18112.1	gi|384433395|ref|YP_005642753.1|	-	6.4	7.3	11.5	2.3	8.8	0.5	3.0	3	0	0	3	3	3	0	Autophagy	receptor	zinc	finger-C2H2	domain
ABC2_membrane	PF01061.24	gi|384433396|ref|YP_005642754.1|	-	1.3e-06	28.0	22.6	1.3e-06	28.0	22.6	2.2	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|384433396|ref|YP_005642754.1|	-	3.3e-05	23.2	32.6	3.3e-05	23.2	32.6	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|384433397|ref|YP_005642755.1|	-	8.3e-24	84.7	0.0	1.3e-23	84.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384433397|ref|YP_005642755.1|	-	3e-12	47.0	0.0	2e-07	31.2	0.0	2.3	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384433397|ref|YP_005642755.1|	-	0.0012	18.3	0.0	0.091	12.2	0.0	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
NB-ARC	PF00931.22	gi|384433397|ref|YP_005642755.1|	-	0.0019	17.4	0.2	0.028	13.6	0.2	2.0	1	1	0	1	1	1	1	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|384433397|ref|YP_005642755.1|	-	0.017	15.0	0.3	0.032	14.1	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA	PF00004.29	gi|384433397|ref|YP_005642755.1|	-	0.02	15.3	0.2	0.049	14.1	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MukB	PF04310.12	gi|384433397|ref|YP_005642755.1|	-	0.021	14.6	0.1	0.039	13.8	0.1	1.4	1	0	0	1	1	1	0	MukB	N-terminal
AAA_15	PF13175.6	gi|384433397|ref|YP_005642755.1|	-	0.021	14.5	0.0	0.44	10.2	0.0	2.2	1	1	1	2	2	2	0	AAA	ATPase	domain
TsaE	PF02367.17	gi|384433397|ref|YP_005642755.1|	-	0.022	14.8	0.1	0.041	13.9	0.1	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_16	PF13191.6	gi|384433397|ref|YP_005642755.1|	-	0.025	15.0	0.0	0.034	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|384433397|ref|YP_005642755.1|	-	0.027	15.0	0.0	0.059	13.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|384433397|ref|YP_005642755.1|	-	0.036	12.7	0.2	0.055	12.1	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.9	gi|384433397|ref|YP_005642755.1|	-	0.038	13.7	0.0	0.074	12.8	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_29	PF13555.6	gi|384433397|ref|YP_005642755.1|	-	0.047	13.4	0.1	0.083	12.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|384433397|ref|YP_005642755.1|	-	0.071	13.0	0.4	0.51	10.2	0.1	2.2	2	0	0	2	2	2	0	NACHT	domain
AAA_30	PF13604.6	gi|384433397|ref|YP_005642755.1|	-	0.084	12.6	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|384433397|ref|YP_005642755.1|	-	0.095	13.0	0.1	0.18	12.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|384433397|ref|YP_005642755.1|	-	0.15	12.3	0.1	0.31	11.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|384433397|ref|YP_005642755.1|	-	0.15	11.3	0.0	0.23	10.7	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
TrmO	PF01980.16	gi|384433398|ref|YP_005642756.1|	-	3.6e-28	98.2	0.0	4.3e-28	97.9	0.0	1.1	1	0	0	1	1	1	1	tRNA-methyltransferase	O
Resolvase	PF00239.21	gi|384433399|ref|YP_005642757.1|	-	8.8e-20	71.3	0.1	1.3e-19	70.8	0.1	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384433399|ref|YP_005642757.1|	-	5e-12	45.8	0.1	9.8e-12	44.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384433399|ref|YP_005642757.1|	-	4.2e-09	36.4	0.2	8.3e-09	35.4	0.2	1.5	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384433399|ref|YP_005642757.1|	-	1.8e-06	27.6	0.0	3.3e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384433399|ref|YP_005642757.1|	-	4.2e-05	23.3	0.5	0.00016	21.5	0.0	2.1	2	0	0	2	2	2	1	MerR	HTH	family	regulatory	protein
CLP1_P	PF16575.5	gi|384433399|ref|YP_005642757.1|	-	0.019	14.8	0.1	0.036	13.9	0.0	1.5	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AbiEi_4	PF13338.6	gi|384433399|ref|YP_005642757.1|	-	0.022	14.9	0.0	0.088	13.0	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_23	PF13384.6	gi|384433399|ref|YP_005642757.1|	-	0.032	14.0	0.0	0.086	12.7	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_29	PF13551.6	gi|384433399|ref|YP_005642757.1|	-	0.083	12.9	0.0	0.23	11.5	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
OrfB_Zn_ribbon	PF07282.11	gi|384433400|ref|YP_005642758.1|	-	3.9e-22	77.9	0.1	9.1e-22	76.8	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384433400|ref|YP_005642758.1|	-	2.3e-18	66.5	2.2	4.6e-18	65.6	0.0	2.3	2	1	1	3	3	3	1	Probable	transposase
DUF2833	PF11090.8	gi|384433400|ref|YP_005642758.1|	-	0.21	12.0	5.2	0.29	11.6	0.4	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2833)
Zn_Tnp_IS1595	PF12760.7	gi|384433400|ref|YP_005642758.1|	-	1.3	9.0	3.7	3.1	7.8	3.7	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384433400|ref|YP_005642758.1|	-	2.2	8.1	5.0	9.6	6.1	5.2	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
CBS	PF00571.28	gi|384433402|ref|YP_005642760.1|	-	8.6e-33	112.6	3.4	5.3e-18	65.2	0.5	2.0	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|384433402|ref|YP_005642760.1|	-	8.9e-05	22.7	2.2	0.032	14.5	0.1	2.9	2	1	1	3	3	3	2	Translation	initiation	factor	IF-3,	N-terminal	domain
TetR_C_25	PF17933.1	gi|384433402|ref|YP_005642760.1|	-	0.014	15.7	0.0	0.022	15.0	0.0	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
NUMOD1	PF07453.13	gi|384433402|ref|YP_005642760.1|	-	0.21	11.9	0.5	22	5.4	0.1	2.4	2	0	0	2	2	2	0	NUMOD1	domain
DUF4430	PF14478.6	gi|384433403|ref|YP_005642761.1|	-	0.14	12.7	0.8	14	6.4	0.0	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4430)
SIT	PF15330.6	gi|384433403|ref|YP_005642761.1|	-	2.2	8.7	7.0	18	5.8	1.0	2.5	2	0	0	2	2	2	0	SHP2-interacting	transmembrane	adaptor	protein,	SIT
OppC_N	PF12911.7	gi|384433403|ref|YP_005642761.1|	-	5.5	7.0	9.3	9.1	6.3	3.7	2.7	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
HxlR	PF01638.17	gi|384433404|ref|YP_005642762.1|	-	4.5e-22	77.7	0.1	6.1e-22	77.3	0.1	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|384433404|ref|YP_005642762.1|	-	7.5e-05	22.5	0.1	0.00014	21.7	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384433404|ref|YP_005642762.1|	-	0.00014	21.9	0.0	0.00024	21.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|384433404|ref|YP_005642762.1|	-	0.00038	20.3	0.1	0.00078	19.3	0.1	1.6	2	0	0	2	2	1	1	MarR	family
PadR	PF03551.14	gi|384433404|ref|YP_005642762.1|	-	0.00073	19.4	0.0	0.0011	18.9	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|384433404|ref|YP_005642762.1|	-	0.00077	19.6	0.2	0.0013	18.9	0.0	1.5	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|384433404|ref|YP_005642762.1|	-	0.0031	17.3	0.0	0.0054	16.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.6	gi|384433404|ref|YP_005642762.1|	-	0.0078	16.2	0.0	0.014	15.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|384433404|ref|YP_005642762.1|	-	0.01	15.4	0.0	0.018	14.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|384433404|ref|YP_005642762.1|	-	0.012	15.5	0.0	0.024	14.6	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|384433404|ref|YP_005642762.1|	-	0.013	15.4	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|384433404|ref|YP_005642762.1|	-	0.019	14.9	0.0	0.035	14.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF505	PF04458.12	gi|384433404|ref|YP_005642762.1|	-	0.021	13.2	0.1	0.024	13.0	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_micro	PF17007.5	gi|384433404|ref|YP_005642762.1|	-	0.024	13.5	0.1	0.026	13.3	0.1	1.1	1	0	0	1	1	1	0	HTH-like
HTH_27	PF13463.6	gi|384433404|ref|YP_005642762.1|	-	0.027	14.9	0.1	0.075	13.5	0.1	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.6	gi|384433404|ref|YP_005642762.1|	-	0.04	14.0	0.0	0.05	13.7	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
RepL	PF05732.11	gi|384433404|ref|YP_005642762.1|	-	0.048	13.1	0.0	0.06	12.8	0.0	1.3	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
RTP	PF02334.16	gi|384433404|ref|YP_005642762.1|	-	0.13	12.9	0.0	0.17	12.5	0.0	1.2	1	0	0	1	1	1	0	Replication	terminator	protein
Aa_trans	PF01490.18	gi|384433405|ref|YP_005642763.1|	-	0.0089	14.8	1.6	0.01	14.6	1.6	1.1	1	0	0	1	1	1	1	Transmembrane	amino	acid	transporter	protein
Tudor_3	PF18115.1	gi|384433407|ref|YP_005642765.1|	-	0.025	14.4	0.0	0.059	13.2	0.0	1.6	1	0	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
ERCC4	PF02732.15	gi|384433407|ref|YP_005642765.1|	-	0.039	14.2	0.1	1.5	9.0	0.0	2.2	2	0	0	2	2	2	0	ERCC4	domain
Imm51	PF15595.6	gi|384433407|ref|YP_005642765.1|	-	0.058	13.3	0.1	0.11	12.5	0.1	1.5	1	0	0	1	1	1	0	Immunity	protein	51
Sugar_tr	PF00083.24	gi|384433408|ref|YP_005642766.1|	-	7.7e-51	173.4	20.7	1e-50	172.9	20.7	1.1	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384433408|ref|YP_005642766.1|	-	1.1e-28	100.2	35.0	5.9e-25	87.9	28.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.20	gi|384433408|ref|YP_005642766.1|	-	0.0096	14.3	0.8	0.0096	14.3	0.8	2.2	1	1	1	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Pkinase	PF00069.25	gi|384433410|ref|YP_005642768.1|	-	8.8e-31	107.2	0.0	1.2e-30	106.8	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|384433410|ref|YP_005642768.1|	-	2.1e-09	37.0	0.0	3.9e-09	36.2	0.0	1.5	1	0	0	1	1	1	1	Protein	tyrosine	kinase
Ndc80_HEC	PF03801.13	gi|384433410|ref|YP_005642768.1|	-	0.061	12.9	0.2	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	HEC/Ndc80p	family
DUF1955	PF09205.10	gi|384433410|ref|YP_005642768.1|	-	0.069	12.9	6.9	0.32	10.7	6.9	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1955)
Usp	PF00582.26	gi|384433411|ref|YP_005642769.1|	-	1.6e-24	87.1	0.1	1.8e-24	86.9	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF3747	PF12565.8	gi|384433411|ref|YP_005642769.1|	-	0.14	11.5	0.0	0.16	11.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3747)
SapB_1	PF05184.15	gi|384433411|ref|YP_005642769.1|	-	0.21	11.7	2.2	0.42	10.7	0.3	2.2	2	0	0	2	2	2	0	Saposin-like	type	B,	region	1
AA_permease_2	PF13520.6	gi|384433412|ref|YP_005642770.1|	-	2e-17	63.2	43.4	2e-17	63.2	43.4	1.9	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384433412|ref|YP_005642770.1|	-	6.5e-15	54.7	41.1	6.5e-15	54.7	41.1	1.6	2	0	0	2	2	2	1	Amino	acid	permease
DUF3899	PF13038.6	gi|384433412|ref|YP_005642770.1|	-	0.095	13.2	0.3	0.095	13.2	0.3	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3899)
DUF2299	PF10061.9	gi|384433414|ref|YP_005642772.1|	-	1.9e-45	154.0	0.0	2.2e-45	153.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
2-Hacid_dh_C	PF02826.19	gi|384433415|ref|YP_005642773.1|	-	3.7e-31	107.9	0.0	4.8e-31	107.5	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|384433415|ref|YP_005642773.1|	-	5.7e-19	68.1	0.0	6.9e-19	67.8	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
Peptidase_C1_2	PF03051.15	gi|384433415|ref|YP_005642773.1|	-	0.079	11.7	0.0	0.11	11.3	0.0	1.1	1	0	0	1	1	1	0	Peptidase	C1-like	family
HTH_45	PF14947.6	gi|384433416|ref|YP_005642774.1|	-	5.6e-10	39.1	2.1	8.7e-10	38.5	2.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|384433416|ref|YP_005642774.1|	-	2.1e-09	36.8	0.5	3.2e-09	36.2	0.5	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|384433416|ref|YP_005642774.1|	-	2.2e-08	33.9	0.8	3.5e-08	33.3	0.8	1.4	1	1	0	1	1	1	1	HTH	domain
HTH_5	PF01022.20	gi|384433416|ref|YP_005642774.1|	-	4.1e-06	26.6	0.5	6.7e-06	25.9	0.5	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|384433416|ref|YP_005642774.1|	-	1.1e-05	25.1	0.0	3e-05	23.7	0.0	1.6	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|384433416|ref|YP_005642774.1|	-	2.4e-05	24.1	0.2	4.2e-05	23.4	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Mga	PF08280.11	gi|384433416|ref|YP_005642774.1|	-	3.4e-05	23.8	0.8	5.9e-05	23.0	0.8	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Rrf2	PF02082.20	gi|384433416|ref|YP_005642774.1|	-	5.4e-05	23.5	0.1	9.5e-05	22.7	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_36	PF13730.6	gi|384433416|ref|YP_005642774.1|	-	0.00013	21.8	0.2	0.00023	21.0	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|384433416|ref|YP_005642774.1|	-	0.00024	20.9	0.1	0.00057	19.8	0.1	1.5	2	0	0	2	2	1	1	MarR	family
MarR_2	PF12802.7	gi|384433416|ref|YP_005642774.1|	-	0.00046	20.0	0.0	0.00072	19.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|384433416|ref|YP_005642774.1|	-	0.00049	19.7	0.1	0.00085	18.9	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
GerE	PF00196.19	gi|384433416|ref|YP_005642774.1|	-	0.00049	19.6	0.0	0.00075	19.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_12	PF08461.10	gi|384433416|ref|YP_005642774.1|	-	0.0007	19.5	1.0	0.0012	18.8	1.0	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_20	PF12840.7	gi|384433416|ref|YP_005642774.1|	-	0.00076	19.5	0.0	0.0011	19.0	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF505	PF04458.12	gi|384433416|ref|YP_005642774.1|	-	0.0011	17.4	0.2	0.0013	17.2	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_23	PF13384.6	gi|384433416|ref|YP_005642774.1|	-	0.0013	18.5	0.0	0.0019	18.0	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384433416|ref|YP_005642774.1|	-	0.002	18.2	0.0	0.0037	17.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|384433416|ref|YP_005642774.1|	-	0.0021	17.7	0.3	0.0037	17.0	0.3	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
RPA_C	PF08784.11	gi|384433416|ref|YP_005642774.1|	-	0.0023	18.6	0.0	0.0031	18.2	0.0	1.1	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
HTH_46	PF15977.5	gi|384433416|ref|YP_005642774.1|	-	0.0028	17.6	0.5	0.0045	17.0	0.5	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA	binding
DUF4423	PF14394.6	gi|384433416|ref|YP_005642774.1|	-	0.0039	16.9	0.1	0.0064	16.2	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_Crp_2	PF13545.6	gi|384433416|ref|YP_005642774.1|	-	0.0046	16.9	0.0	0.0061	16.5	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4364	PF14277.6	gi|384433416|ref|YP_005642774.1|	-	0.0057	16.4	0.1	0.012	15.4	0.1	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
FaeA	PF04703.12	gi|384433416|ref|YP_005642774.1|	-	0.0068	16.8	0.0	0.011	16.1	0.0	1.2	1	0	0	1	1	1	1	FaeA-like	protein
Mrr_N	PF14338.6	gi|384433416|ref|YP_005642774.1|	-	0.0094	16.1	0.1	0.017	15.3	0.1	1.5	1	1	0	1	1	1	1	Mrr	N-terminal	domain
DUF2250	PF10007.9	gi|384433416|ref|YP_005642774.1|	-	0.01	15.9	1.5	0.013	15.6	0.4	1.8	2	1	0	2	2	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sigma70_r4_2	PF08281.12	gi|384433416|ref|YP_005642774.1|	-	0.014	15.1	0.1	0.022	14.4	0.1	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|384433416|ref|YP_005642774.1|	-	0.019	14.4	0.1	0.035	13.6	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_34	PF13601.6	gi|384433416|ref|YP_005642774.1|	-	0.02	15.0	0.6	0.22	11.7	0.6	2.1	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_40	PF14493.6	gi|384433416|ref|YP_005642774.1|	-	0.021	15.3	0.2	0.03	14.8	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384433416|ref|YP_005642774.1|	-	0.022	15.0	0.5	0.054	13.7	0.2	1.8	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Ribosomal_S19e	PF01090.19	gi|384433416|ref|YP_005642774.1|	-	0.022	14.4	0.0	0.032	13.9	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
Ribosomal_S25	PF03297.15	gi|384433416|ref|YP_005642774.1|	-	0.024	14.8	0.1	0.036	14.3	0.1	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
Phage_rep_org_N	PF09681.10	gi|384433416|ref|YP_005642774.1|	-	0.029	14.3	0.1	0.05	13.5	0.1	1.4	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
SgrR_N	PF12793.7	gi|384433416|ref|YP_005642774.1|	-	0.04	14.1	0.0	0.055	13.7	0.0	1.2	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_29	PF13551.6	gi|384433416|ref|YP_005642774.1|	-	0.059	13.4	0.0	0.082	12.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
B-block_TFIIIC	PF04182.12	gi|384433416|ref|YP_005642774.1|	-	0.07	13.3	2.3	0.4	10.9	0.3	2.2	1	1	1	2	2	2	0	B-block	binding	subunit	of	TFIIIC
HTH_9	PF08221.11	gi|384433416|ref|YP_005642774.1|	-	0.081	13.0	0.1	0.17	12.0	0.1	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HemN_C	PF06969.16	gi|384433416|ref|YP_005642774.1|	-	0.086	12.9	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	HemN	C-terminal	domain
SelB-wing_3	PF09107.11	gi|384433416|ref|YP_005642774.1|	-	0.088	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
Rio2_N	PF09202.11	gi|384433416|ref|YP_005642774.1|	-	0.1	12.8	0.1	0.17	12.1	0.1	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
RNA_pol_Rpc34	PF05158.12	gi|384433416|ref|YP_005642774.1|	-	0.12	11.8	0.2	0.15	11.4	0.2	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_27	PF13463.6	gi|384433416|ref|YP_005642774.1|	-	0.13	12.8	0.3	0.28	11.7	0.2	1.6	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
AA_permease_2	PF13520.6	gi|384433417|ref|YP_005642775.1|	-	9e-25	87.4	60.8	1.4e-24	86.7	60.8	1.3	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384433417|ref|YP_005642775.1|	-	0.0021	16.7	57.8	0.0047	15.6	57.9	1.6	1	1	0	1	1	1	1	Amino	acid	permease
AC_N	PF16214.5	gi|384433417|ref|YP_005642775.1|	-	0.14	11.3	1.9	0.22	10.6	1.9	1.2	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
Glyco_hydro_1	PF00232.18	gi|384433417|ref|YP_005642775.1|	-	0.2	10.0	0.0	0.3	9.5	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	1
Molybdopterin	PF00384.22	gi|384433418|ref|YP_005642776.1|	-	1.4e-11	44.1	0.0	8.1e-08	31.6	0.0	2.6	2	1	1	3	3	3	2	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|384433418|ref|YP_005642776.1|	-	0.024	14.7	0.0	2.1	8.4	0.0	2.7	2	1	0	2	2	2	0	Molydopterin	dinucleotide	binding	domain
Na_Ca_ex	PF01699.24	gi|384433419|ref|YP_005642777.1|	-	5.9e-31	107.5	33.6	3.4e-19	69.3	13.3	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Aldedh	PF00171.22	gi|384433420|ref|YP_005642778.1|	-	1.6e-110	369.8	0.0	1.9e-110	369.6	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|384433420|ref|YP_005642778.1|	-	3.9e-06	26.2	0.0	7.5e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
PfkB	PF00294.24	gi|384433421|ref|YP_005642779.1|	-	8.9e-43	146.7	0.0	9.9e-43	146.6	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
DHDPS	PF00701.22	gi|384433422|ref|YP_005642780.1|	-	3.6e-43	147.3	0.0	4.2e-43	147.1	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
MR_MLE_C	PF13378.6	gi|384433423|ref|YP_005642781.1|	-	2.9e-50	170.9	0.7	3.5e-50	170.6	0.0	1.4	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|384433423|ref|YP_005642781.1|	-	1.6e-12	47.7	0.0	3.4e-12	46.6	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
YnfE	PF17452.2	gi|384433423|ref|YP_005642781.1|	-	0.057	13.7	0.1	17	5.7	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	YnfE-like
PsiE	PF06146.12	gi|384433424|ref|YP_005642782.1|	-	1.2e-08	35.1	4.6	2e-08	34.5	4.6	1.4	1	0	0	1	1	1	1	Phosphate-starvation-inducible	E
DUF123	PF01986.16	gi|384433425|ref|YP_005642783.1|	-	2.9e-17	63.0	0.1	3.7e-17	62.6	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
GIY-YIG	PF01541.24	gi|384433425|ref|YP_005642783.1|	-	0.058	13.7	0.1	0.075	13.3	0.1	1.5	1	0	0	1	1	1	0	GIY-YIG	catalytic	domain
Oxidored_molyb	PF00174.19	gi|384433426|ref|YP_005642784.1|	-	8.2e-39	133.0	0.0	1e-38	132.7	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
BppU_N	PF10651.9	gi|384433426|ref|YP_005642784.1|	-	0.17	11.5	0.0	15	5.3	0.0	2.1	2	0	0	2	2	2	0	BppU	N-terminal	domain
Voltage_CLC	PF00654.20	gi|384433427|ref|YP_005642785.1|	-	4.9e-91	305.6	37.6	1.7e-90	303.9	30.9	2.1	2	0	0	2	2	2	2	Voltage	gated	chloride	channel
CBS	PF00571.28	gi|384433427|ref|YP_005642785.1|	-	1.4e-14	54.2	0.2	7e-06	26.4	0.2	2.5	2	0	0	2	2	2	2	CBS	domain
Tim17	PF02466.19	gi|384433427|ref|YP_005642785.1|	-	0.38	11.1	0.1	0.38	11.1	0.1	3.8	5	1	0	5	5	5	0	Tim17/Tim22/Tim23/Pmp24	family
AMP-binding	PF00501.28	gi|384433428|ref|YP_005642786.1|	-	2.8e-83	279.9	0.0	4.1e-83	279.3	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384433428|ref|YP_005642786.1|	-	4.7e-26	91.6	0.6	9.4e-26	90.6	0.6	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|384433428|ref|YP_005642786.1|	-	2.4e-17	62.6	0.7	4.6e-17	61.7	0.7	1.5	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
Glu_dehyd_C	PF16912.5	gi|384433429|ref|YP_005642787.1|	-	1.1e-27	97.0	0.0	1.4e-27	96.6	0.0	1.1	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|384433429|ref|YP_005642787.1|	-	3.5e-23	81.6	0.3	7.8e-23	80.4	0.2	1.6	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
FAD_binding_3	PF01494.19	gi|384433429|ref|YP_005642787.1|	-	0.00076	18.8	0.0	0.0012	18.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
ADH_zinc_N	PF00107.26	gi|384433429|ref|YP_005642787.1|	-	0.021	14.8	0.0	0.035	14.1	0.0	1.3	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Pyr_redox_2	PF07992.14	gi|384433429|ref|YP_005642787.1|	-	0.1	11.8	0.0	0.15	11.2	0.0	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
CBS	PF00571.28	gi|384433430|ref|YP_005642788.1|	-	4.2e-41	139.2	12.8	1.7e-10	41.2	0.2	4.1	4	0	0	4	4	4	4	CBS	domain
Ribonuc_L-PSP	PF01042.21	gi|384433431|ref|YP_005642789.1|	-	2e-42	144.1	0.1	2.2e-42	143.9	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Pox_J1	PF03338.15	gi|384433431|ref|YP_005642789.1|	-	0.023	14.6	0.1	0.029	14.3	0.1	1.1	1	0	0	1	1	1	0	Poxvirus	J1	protein
Pirin_C	PF05726.13	gi|384433432|ref|YP_005642790.1|	-	0.04	14.3	0.0	0.049	14.0	0.0	1.1	1	0	0	1	1	1	0	Pirin	C-terminal	cupin	domain
Pkinase	PF00069.25	gi|384433433|ref|YP_005642791.1|	-	1.9e-27	96.3	0.0	3e-27	95.6	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|384433433|ref|YP_005642791.1|	-	4.9e-11	42.4	0.0	1.4e-10	40.9	0.0	1.8	1	1	0	1	1	1	1	Protein	tyrosine	kinase
TPR_16	PF13432.6	gi|384433433|ref|YP_005642791.1|	-	6.6e-08	33.1	0.1	0.00022	21.8	0.0	3.3	2	1	1	3	3	3	2	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|384433433|ref|YP_005642791.1|	-	2.3e-07	30.4	6.3	0.00017	21.4	0.0	4.2	5	0	0	5	5	4	2	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|384433433|ref|YP_005642791.1|	-	3.6e-06	26.8	0.1	0.026	14.7	0.0	3.1	2	0	0	2	2	2	2	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|384433433|ref|YP_005642791.1|	-	6.3e-06	26.3	0.9	0.00018	21.7	0.1	2.8	2	1	0	2	2	2	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_1	PF00515.28	gi|384433433|ref|YP_005642791.1|	-	2.2e-05	24.1	1.3	0.003	17.3	0.0	3.6	4	0	0	4	4	4	1	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|384433433|ref|YP_005642791.1|	-	0.00024	21.6	0.0	0.026	15.0	0.0	2.5	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_14	PF13428.6	gi|384433433|ref|YP_005642791.1|	-	0.00072	20.2	0.0	0.21	12.5	0.0	3.3	2	1	1	3	3	3	1	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|384433433|ref|YP_005642791.1|	-	0.00092	19.1	0.1	0.13	12.4	0.0	3.3	3	0	0	3	3	3	1	Tetratricopeptide	repeat
FTA2	PF13095.6	gi|384433433|ref|YP_005642791.1|	-	0.0052	16.4	0.7	0.12	12.0	0.1	2.7	3	0	0	3	3	3	1	Kinetochore	Sim4	complex	subunit	FTA2
TPR_12	PF13424.6	gi|384433433|ref|YP_005642791.1|	-	0.0054	17.0	0.5	3.3	8.1	0.1	3.5	3	1	1	4	4	4	2	Tetratricopeptide	repeat
HrpB1_HrpK	PF09613.10	gi|384433433|ref|YP_005642791.1|	-	0.0062	16.2	0.0	4	7.1	0.0	3.1	2	1	1	3	3	3	1	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
DUF1955	PF09205.10	gi|384433433|ref|YP_005642791.1|	-	0.019	14.7	0.5	5.8	6.6	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1955)
TPR_6	PF13174.6	gi|384433433|ref|YP_005642791.1|	-	0.027	15.1	0.9	24	5.9	0.0	4.4	3	1	1	4	4	4	0	Tetratricopeptide	repeat
APH	PF01636.23	gi|384433433|ref|YP_005642791.1|	-	0.027	14.4	0.0	7.3	6.4	0.0	2.5	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
SRP_TPR_like	PF17004.5	gi|384433433|ref|YP_005642791.1|	-	0.046	13.7	4.9	5.4	7.1	0.2	3.3	2	1	0	2	2	2	0	Putative	TPR-like	repeat
TPR_10	PF13374.6	gi|384433433|ref|YP_005642791.1|	-	0.047	13.6	0.5	0.3	11.0	0.0	2.6	3	0	0	3	3	2	0	Tetratricopeptide	repeat
Kdo	PF06293.14	gi|384433433|ref|YP_005642791.1|	-	0.061	12.7	0.0	0.14	11.5	0.0	1.6	1	0	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
NOG1_N	PF17835.1	gi|384433433|ref|YP_005642791.1|	-	0.063	13.3	0.1	0.27	11.2	0.0	2.1	2	0	0	2	2	1	0	NOG1	N-terminal	helical	domain
PPR	PF01535.20	gi|384433433|ref|YP_005642791.1|	-	0.13	12.6	4.0	10	6.6	0.1	4.5	5	0	0	5	5	4	0	PPR	repeat
Aldo_ket_red	PF00248.21	gi|384433434|ref|YP_005642792.1|	-	6.9e-70	235.6	0.3	7.9e-68	228.8	0.3	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Terminase_1	PF03354.15	gi|384433434|ref|YP_005642792.1|	-	0.018	13.6	0.0	0.027	13.0	0.0	1.4	1	0	0	1	1	1	0	Phage	Terminase
FBA_2	PF07735.17	gi|384433434|ref|YP_005642792.1|	-	0.025	14.7	0.4	0.065	13.4	0.4	1.6	1	0	0	1	1	1	0	F-box	associated
SieB	PF14163.6	gi|384433434|ref|YP_005642792.1|	-	0.058	12.9	0.4	0.1	12.1	0.4	1.4	1	0	0	1	1	1	0	Super-infection	exclusion	protein	B
TPP_enzyme_N	PF02776.18	gi|384433435|ref|YP_005642793.1|	-	4.4e-43	146.9	0.0	1e-42	145.7	0.0	1.6	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|384433435|ref|YP_005642793.1|	-	4.5e-10	39.5	0.1	1.1e-09	38.3	0.0	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|384433435|ref|YP_005642793.1|	-	2.7e-05	23.9	0.0	0.00018	21.2	0.0	2.3	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DDE_Tnp_1	PF01609.21	gi|384433436|ref|YP_005642794.1|	-	2.2e-15	56.9	0.4	2.9e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|384433436|ref|YP_005642794.1|	-	2.9e-08	34.0	0.0	9.8e-08	32.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF4298	PF14131.6	gi|384433436|ref|YP_005642794.1|	-	0.046	13.7	0.7	0.24	11.4	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Aminotran_3	PF00202.21	gi|384433437|ref|YP_005642795.1|	-	3.3e-111	371.8	0.0	4.1e-111	371.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
SKG6	PF08693.10	gi|384433438|ref|YP_005642796.1|	-	0.32	10.4	0.3	0.32	10.4	0.3	2.2	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
YwiC	PF14256.6	gi|384433439|ref|YP_005642797.1|	-	0.11	12.8	11.2	0.22	11.9	1.9	2.5	1	1	1	2	2	2	0	YwiC-like	protein
Helicase_RecD	PF05127.14	gi|384433440|ref|YP_005642798.1|	-	1.1e-48	165.4	0.0	1.9e-48	164.7	0.0	1.4	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|384433440|ref|YP_005642798.1|	-	1e-36	126.4	0.0	2.8e-27	95.6	0.0	2.3	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|384433440|ref|YP_005642798.1|	-	1.1e-23	83.0	0.1	2.3e-23	81.9	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|384433440|ref|YP_005642798.1|	-	7.5e-06	25.8	0.0	1.2e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Acetyltransf_7	PF13508.7	gi|384433440|ref|YP_005642798.1|	-	1.2e-05	25.6	0.0	3.3e-05	24.2	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|384433440|ref|YP_005642798.1|	-	1.4e-05	25.3	0.1	4.7e-05	23.6	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|384433440|ref|YP_005642798.1|	-	0.0029	17.5	0.0	0.0084	16.0	0.0	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DEAD	PF00270.29	gi|384433440|ref|YP_005642798.1|	-	0.0052	16.6	0.0	0.014	15.2	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Acetyltransf_CG	PF14542.6	gi|384433440|ref|YP_005642798.1|	-	0.054	13.6	0.0	0.19	11.9	0.0	1.9	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|384433440|ref|YP_005642798.1|	-	0.1	12.7	0.0	0.55	10.3	0.0	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
MazG	PF03819.17	gi|384433441|ref|YP_005642799.1|	-	3.8e-13	49.4	0.6	5.4e-13	48.9	0.6	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
MazG-like	PF12643.7	gi|384433441|ref|YP_005642799.1|	-	7.3e-07	29.4	0.4	7.3e-07	29.4	0.4	1.6	2	0	0	2	2	2	1	MazG-like	family
PRA-PH	PF01503.17	gi|384433441|ref|YP_005642799.1|	-	8.7e-06	26.1	0.5	1.1e-05	25.8	0.5	1.2	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
Wtap	PF17098.5	gi|384433441|ref|YP_005642799.1|	-	0.04	13.8	0.1	0.051	13.5	0.1	1.2	1	0	0	1	1	1	0	WTAP/Mum2p	family
G_glu_transpept	PF01019.21	gi|384433443|ref|YP_005642801.1|	-	3.6e-83	280.1	0.0	4.6e-83	279.7	0.0	1.1	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
BcrAD_BadFG	PF01869.20	gi|384433445|ref|YP_005642803.1|	-	7.7e-59	199.4	1.2	9.7e-59	199.0	1.2	1.1	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
ROK	PF00480.20	gi|384433445|ref|YP_005642803.1|	-	0.00063	19.3	0.2	0.0019	17.7	0.0	1.8	2	0	0	2	2	2	1	ROK	family
Antimicrobial15	PF08110.12	gi|384433445|ref|YP_005642803.1|	-	0.032	14.5	0.0	0.1	12.8	0.0	2.0	1	0	0	1	1	1	0	Ocellatin	family
NTP_transferase	PF00483.23	gi|384433446|ref|YP_005642804.1|	-	2.6e-26	92.7	0.0	3.2e-26	92.4	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|384433446|ref|YP_005642804.1|	-	5e-07	30.2	0.0	6.8e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
AA_permease	PF00324.21	gi|384433447|ref|YP_005642805.1|	-	1.6e-21	76.4	55.2	3.6e-21	75.3	54.6	1.7	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|384433447|ref|YP_005642805.1|	-	8.8e-16	57.8	60.4	1.1e-15	57.4	60.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
PMT_2	PF13231.6	gi|384433448|ref|YP_005642806.1|	-	8.8e-09	35.8	14.9	8.8e-09	35.8	14.9	2.5	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DeoC	PF01791.9	gi|384433449|ref|YP_005642807.1|	-	2.6e-32	112.3	0.0	3.1e-32	112.1	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
BTP	PF05232.12	gi|384433450|ref|YP_005642808.1|	-	0.0011	19.0	3.3	0.0011	19.0	3.3	4.2	3	0	0	3	3	3	1	Chlorhexidine	efflux	transporter
Polysacc_synt	PF01943.17	gi|384433450|ref|YP_005642808.1|	-	0.0045	16.4	32.2	0.0045	16.4	32.2	3.2	1	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
CBS	PF00571.28	gi|384433451|ref|YP_005642809.1|	-	1.2e-30	105.8	6.2	4.3e-15	55.9	0.3	2.1	2	0	0	2	2	2	2	CBS	domain
IF3_N	PF05198.16	gi|384433451|ref|YP_005642809.1|	-	0.029	14.6	0.3	11	6.3	0.0	2.5	2	1	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Peptidase_M48	PF01435.18	gi|384433452|ref|YP_005642810.1|	-	3.1e-27	95.6	0.0	1.5e-26	93.4	0.0	1.8	2	0	0	2	2	2	1	Peptidase	family	M48
Zn_peptidase_2	PF04298.12	gi|384433452|ref|YP_005642810.1|	-	0.00052	19.5	0.1	0.00052	19.5	0.1	2.1	3	0	0	3	3	3	1	Putative	neutral	zinc	metallopeptidase
GMP_synt_C	PF00958.22	gi|384433453|ref|YP_005642811.1|	-	5.1e-25	87.4	1.0	1.1e-21	76.7	0.3	2.7	1	1	1	2	2	2	2	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|384433453|ref|YP_005642811.1|	-	1.6e-12	47.1	0.2	7.2e-12	44.9	0.1	2.0	2	1	0	2	2	2	1	NAD	synthase
ATP_bind_3	PF01171.20	gi|384433453|ref|YP_005642811.1|	-	1.7e-07	31.2	0.0	2.9e-07	30.4	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
QueC	PF06508.13	gi|384433453|ref|YP_005642811.1|	-	0.00024	20.7	0.0	0.011	15.2	0.0	2.2	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|384433453|ref|YP_005642811.1|	-	0.0013	17.6	0.1	0.13	11.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
ThiI	PF02568.14	gi|384433453|ref|YP_005642811.1|	-	0.034	13.7	0.7	0.14	11.7	0.1	2.4	2	2	0	2	2	2	0	Thiamine	biosynthesis	protein	(ThiI)
Arginosuc_synth	PF00764.19	gi|384433453|ref|YP_005642811.1|	-	0.061	12.6	0.0	0.063	12.6	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
FcoT	PF10862.8	gi|384433453|ref|YP_005642811.1|	-	0.12	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	FcoT-like	thioesterase	domain
Haemocyan_bet_s	PF14830.6	gi|384433453|ref|YP_005642811.1|	-	0.18	11.8	0.3	1	9.4	0.1	2.1	2	0	0	2	2	2	0	Haemocyanin	beta-sandwich
Asn_synthase	PF00733.21	gi|384433453|ref|YP_005642811.1|	-	0.19	11.4	0.2	10	5.7	0.2	2.3	1	1	0	2	2	2	0	Asparagine	synthase
GATase_3	PF07685.14	gi|384433454|ref|YP_005642812.1|	-	9.6e-43	146.1	0.1	2.1e-42	145.0	0.0	1.6	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
AAA_26	PF13500.6	gi|384433454|ref|YP_005642812.1|	-	1.2e-14	54.6	0.0	8.3e-09	35.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
CbiA	PF01656.23	gi|384433454|ref|YP_005642812.1|	-	1.7e-11	44.3	0.0	4.6e-11	42.9	0.0	1.7	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase	PF00117.28	gi|384433454|ref|YP_005642812.1|	-	9.9e-05	22.2	0.0	0.0023	17.7	0.0	2.2	2	0	0	2	2	2	1	Glutamine	amidotransferase	class-I
SNO	PF01174.19	gi|384433454|ref|YP_005642812.1|	-	0.00018	21.4	0.0	0.00032	20.6	0.0	1.4	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
CobS	PF02654.15	gi|384433455|ref|YP_005642813.1|	-	4.2e-34	118.6	4.6	4.8e-34	118.3	4.6	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
FixP_N	PF14715.6	gi|384433455|ref|YP_005642813.1|	-	0.04	13.7	6.6	0.64	9.8	3.0	2.7	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
TRIQK	PF15168.6	gi|384433455|ref|YP_005642813.1|	-	3.3	7.7	6.6	0.87	9.5	0.2	3.0	3	0	0	3	3	3	0	Triple	QxxK/R	motif-containing	protein	family
CobD_Cbib	PF03186.13	gi|384433456|ref|YP_005642814.1|	-	3.5e-72	242.9	0.0	4.6e-72	242.5	0.0	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
ADH_N	PF08240.12	gi|384433457|ref|YP_005642815.1|	-	4.4e-26	90.9	0.2	1.1e-25	89.6	0.2	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384433457|ref|YP_005642815.1|	-	3e-19	69.3	0.1	4.7e-19	68.6	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|384433457|ref|YP_005642815.1|	-	1.2e-11	44.6	0.6	1.7e-11	44.0	0.6	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
DUF4147	PF13660.6	gi|384433457|ref|YP_005642815.1|	-	0.012	15.2	0.3	0.27	10.8	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4147)
Fer4_17	PF13534.6	gi|384433457|ref|YP_005642815.1|	-	0.04	14.5	1.1	0.064	13.8	0.2	1.7	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
ADH_zinc_N_2	PF13602.6	gi|384433457|ref|YP_005642815.1|	-	0.047	14.7	0.0	0.086	13.9	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Fer4_8	PF13183.6	gi|384433457|ref|YP_005642815.1|	-	0.34	11.4	2.9	0.29	11.6	0.5	1.9	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Peptidase_M48	PF01435.18	gi|384433458|ref|YP_005642816.1|	-	4.5e-20	72.2	5.7	9.6e-19	67.9	5.7	2.5	1	1	0	1	1	1	1	Peptidase	family	M48
DUF2268	PF10026.9	gi|384433458|ref|YP_005642816.1|	-	0.012	15.1	0.2	0.15	11.6	0.3	2.0	2	0	0	2	2	2	0	Predicted	Zn-dependent	protease	(DUF2268)
Peptidase_M56	PF05569.11	gi|384433458|ref|YP_005642816.1|	-	0.013	14.7	2.0	0.028	13.6	1.2	2.0	1	1	0	1	1	1	0	BlaR1	peptidase	M56
DUF4870	PF09685.10	gi|384433458|ref|YP_005642816.1|	-	1.2	9.3	9.1	0.15	12.2	1.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4870)
DUF4220	PF13968.6	gi|384433458|ref|YP_005642816.1|	-	1.5	8.2	8.2	3.3	7.0	1.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4220)
Ald_Xan_dh_C2	PF02738.18	gi|384433459|ref|YP_005642817.1|	-	2.9e-157	524.4	0.0	3.6e-157	524.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384433459|ref|YP_005642817.1|	-	4.5e-13	49.5	0.0	1.3e-10	41.6	0.0	2.6	1	1	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF1947	PF09183.10	gi|384433460|ref|YP_005642818.1|	-	1e-23	83.4	1.3	1.7e-23	82.6	1.3	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
PUA	PF01472.20	gi|384433460|ref|YP_005642818.1|	-	7.6e-16	57.8	0.1	1.2e-15	57.2	0.1	1.3	1	0	0	1	1	1	1	PUA	domain
Glycos_transf_2	PF00535.26	gi|384433461|ref|YP_005642819.1|	-	2.1e-30	105.8	0.2	3.6e-30	105.0	0.1	1.4	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|384433461|ref|YP_005642819.1|	-	4.5e-09	36.5	0.0	5.2e-09	36.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|384433461|ref|YP_005642819.1|	-	2.7e-06	27.1	0.0	4.2e-06	26.4	0.0	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|384433461|ref|YP_005642819.1|	-	0.0072	15.8	0.0	0.01	15.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|384433461|ref|YP_005642819.1|	-	0.015	15.8	0.0	0.037	14.5	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
HTH_11	PF08279.12	gi|384433462|ref|YP_005642820.1|	-	5.5e-06	26.2	1.5	3.7e-05	23.6	0.0	2.5	2	1	0	2	2	2	1	HTH	domain
HTH_DeoR	PF08220.12	gi|384433462|ref|YP_005642820.1|	-	1.1e-05	25.0	0.0	3.7e-05	23.4	0.0	1.9	2	1	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|384433462|ref|YP_005642820.1|	-	2.7e-05	23.7	0.1	2.7e-05	23.7	0.1	1.9	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|384433462|ref|YP_005642820.1|	-	0.0002	21.2	0.2	0.00094	19.1	0.0	2.0	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|384433462|ref|YP_005642820.1|	-	0.0012	18.7	0.0	0.0019	18.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|384433462|ref|YP_005642820.1|	-	0.0017	18.1	0.1	0.0084	15.9	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384433462|ref|YP_005642820.1|	-	0.0021	18.2	0.3	0.0041	17.3	0.0	1.6	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|384433462|ref|YP_005642820.1|	-	0.0031	17.3	0.0	0.0069	16.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fib_alpha	PF08702.10	gi|384433462|ref|YP_005642820.1|	-	0.0076	16.4	2.2	0.0096	16.1	2.2	1.2	1	0	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
Phage_rep_org_N	PF09681.10	gi|384433462|ref|YP_005642820.1|	-	0.012	15.5	0.2	0.039	13.9	0.1	1.7	1	1	1	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
FeoC	PF09012.10	gi|384433462|ref|YP_005642820.1|	-	0.013	15.6	0.9	0.24	11.5	0.0	2.4	1	1	1	2	2	2	0	FeoC	like	transcriptional	regulator
TrmB	PF01978.19	gi|384433462|ref|YP_005642820.1|	-	0.013	15.4	0.9	0.043	13.7	0.1	2.0	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|384433462|ref|YP_005642820.1|	-	0.015	15.6	0.1	0.037	14.4	0.0	1.7	1	1	0	1	1	1	0	Transcriptional	regulator
DUF4423	PF14394.6	gi|384433462|ref|YP_005642820.1|	-	0.047	13.4	1.1	0.17	11.5	0.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_36	PF13730.6	gi|384433462|ref|YP_005642820.1|	-	0.063	13.2	1.7	0.2	11.7	0.0	2.4	2	1	1	3	3	3	0	Helix-turn-helix	domain
DUF2250	PF10007.9	gi|384433462|ref|YP_005642820.1|	-	0.074	13.2	0.1	0.074	13.2	0.1	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
FlaC_arch	PF05377.11	gi|384433462|ref|YP_005642820.1|	-	0.091	13.2	1.2	0.23	11.9	1.2	1.7	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
Med9	PF07544.13	gi|384433462|ref|YP_005642820.1|	-	0.11	12.6	4.5	4.5	7.4	4.5	2.1	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
LexA_DNA_bind	PF01726.16	gi|384433462|ref|YP_005642820.1|	-	0.17	11.7	2.1	8.4	6.2	0.1	3.1	2	1	0	2	2	2	0	LexA	DNA	binding	domain
NPA	PF16469.5	gi|384433462|ref|YP_005642820.1|	-	0.17	12.5	3.9	0.11	13.1	2.3	1.5	2	0	0	2	2	2	0	Nematode	polyprotein	allergen	ABA-1
OCD_Mu_crystall	PF02423.15	gi|384433463|ref|YP_005642821.1|	-	1.6e-30	106.1	0.0	2e-30	105.9	0.0	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
NAD_binding_2	PF03446.15	gi|384433463|ref|YP_005642821.1|	-	0.00014	22.1	0.0	0.00022	21.4	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|384433463|ref|YP_005642821.1|	-	0.0046	17.0	0.1	0.0074	16.3	0.1	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
PPS_PS	PF02006.16	gi|384433463|ref|YP_005642821.1|	-	0.0077	15.8	0.2	0.051	13.1	0.0	2.2	2	0	0	2	2	2	1	Phosphopantothenate/pantothenate	synthetase
2-Hacid_dh_C	PF02826.19	gi|384433463|ref|YP_005642821.1|	-	0.032	13.6	0.2	0.12	11.7	0.0	2.0	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Peptidase_U32_C	PF16325.5	gi|384433463|ref|YP_005642821.1|	-	0.089	13.1	0.0	0.26	11.6	0.0	1.9	2	0	0	2	2	2	0	Peptidase	family	U32	C-terminal	domain
Aminotran_1_2	PF00155.21	gi|384433464|ref|YP_005642822.1|	-	2e-29	102.9	0.0	2.2e-29	102.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|384433464|ref|YP_005642822.1|	-	4e-09	35.8	0.0	6.6e-09	35.0	0.0	1.3	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
HTH_27	PF13463.6	gi|384433464|ref|YP_005642822.1|	-	0.048	14.2	0.0	0.13	12.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PaREP1	PF05942.11	gi|384433465|ref|YP_005642823.1|	-	2.9e-05	24.0	0.0	6.4e-05	22.9	0.0	1.6	1	1	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
AAA_assoc_C	PF09821.9	gi|384433467|ref|YP_005642825.1|	-	1.1e-28	100.1	0.2	1.4e-28	99.8	0.2	1.1	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
EbsA	PF17255.2	gi|384433467|ref|YP_005642825.1|	-	0.058	13.7	2.4	0.082	13.2	2.1	1.4	1	1	0	1	1	1	0	EbsA-like	protein
BPL_N	PF09825.9	gi|384433467|ref|YP_005642825.1|	-	0.16	11.1	0.0	0.18	10.9	0.0	1.1	1	0	0	1	1	1	0	Biotin-protein	ligase,	N	terminal
Glyco_hydro_80	PF13647.6	gi|384433467|ref|YP_005642825.1|	-	0.2	11.1	0.0	0.27	10.7	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	80	of	chitosanase	A
VIT1	PF01988.19	gi|384433468|ref|YP_005642826.1|	-	1.4e-45	155.8	0.7	1.6e-45	155.6	0.7	1.0	1	0	0	1	1	1	1	VIT	family
RecX	PF02631.16	gi|384433468|ref|YP_005642826.1|	-	0.054	13.9	0.5	0.23	11.9	0.1	2.0	2	0	0	2	2	2	0	RecX	family
LHC	PF00556.20	gi|384433468|ref|YP_005642826.1|	-	0.21	11.8	0.1	0.21	11.8	0.1	2.5	3	0	0	3	3	3	0	Antenna	complex	alpha/beta	subunit
YqbF	PF14553.6	gi|384433468|ref|YP_005642826.1|	-	0.32	10.9	2.2	0.32	10.9	0.1	2.1	2	0	0	2	2	2	0	YqbF,	hypothetical	protein	domain
Lactamase_B_2	PF12706.7	gi|384433469|ref|YP_005642827.1|	-	5.6e-07	29.3	1.0	1.2e-06	28.2	1.0	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384433469|ref|YP_005642827.1|	-	1.7e-06	28.2	0.6	5.7e-05	23.2	0.7	2.2	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|384433469|ref|YP_005642827.1|	-	1.9e-06	27.9	0.1	3e-06	27.2	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DHH	PF01368.20	gi|384433469|ref|YP_005642827.1|	-	0.11	12.8	1.1	0.52	10.6	0.2	2.3	2	1	0	2	2	2	0	DHH	family
Glyco_tranf_2_3	PF13641.6	gi|384433471|ref|YP_005642829.1|	-	1.4e-32	113.5	0.0	1.8e-32	113.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|384433471|ref|YP_005642829.1|	-	4.7e-26	91.9	0.2	6.7e-26	91.4	0.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.26	gi|384433471|ref|YP_005642829.1|	-	3.2e-25	88.9	0.0	4.4e-25	88.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|384433471|ref|YP_005642829.1|	-	3.7e-11	42.8	0.0	6.8e-11	41.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|384433471|ref|YP_005642829.1|	-	1.3e-07	31.4	0.0	6.4e-07	29.1	0.0	1.8	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Cellulose_synt	PF03552.14	gi|384433471|ref|YP_005642829.1|	-	0.00048	18.8	6.3	0.00067	18.3	6.3	1.2	1	0	0	1	1	1	1	Cellulose	synthase
Glyco_tranf_2_4	PF13704.6	gi|384433471|ref|YP_005642829.1|	-	0.00061	20.3	0.0	0.0011	19.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Chitin_synth_2	PF03142.15	gi|384433471|ref|YP_005642829.1|	-	0.072	11.7	6.3	2.9	6.4	5.7	2.2	2	0	0	2	2	2	0	Chitin	synthase
Glyco_transf_7N	PF13733.6	gi|384433471|ref|YP_005642829.1|	-	0.076	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	N-terminal	region	of	glycosyl	transferase	group	7
Anp1	PF03452.14	gi|384433471|ref|YP_005642829.1|	-	0.08	12.3	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Anp1
PDDEXK_1	PF12705.7	gi|384433472|ref|YP_005642830.1|	-	1.6e-10	41.3	0.6	1.8e-08	34.6	0.4	2.7	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.17	gi|384433472|ref|YP_005642830.1|	-	3.9e-08	33.6	0.0	5.2e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
RE_TdeIII	PF09520.10	gi|384433472|ref|YP_005642830.1|	-	0.00033	20.4	0.0	0.00046	19.9	0.0	1.2	1	0	0	1	1	1	1	Type	II	restriction	endonuclease,	TdeIII
PDDEXK_3	PF13366.6	gi|384433472|ref|YP_005642830.1|	-	0.0017	18.7	0.0	0.0032	17.8	0.0	1.4	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Dna2	PF08696.11	gi|384433472|ref|YP_005642830.1|	-	0.1	12.4	0.0	0.2	11.4	0.0	1.5	1	1	0	1	1	1	0	DNA	replication	factor	Dna2
Phos_pyr_kin	PF08543.12	gi|384433473|ref|YP_005642831.1|	-	1.7e-74	250.3	0.5	2.1e-74	250.0	0.5	1.1	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.24	gi|384433473|ref|YP_005642831.1|	-	1.5e-13	50.8	0.1	2.1e-13	50.2	0.1	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.17	gi|384433473|ref|YP_005642831.1|	-	4e-09	36.3	0.1	7.6e-09	35.4	0.1	1.4	1	0	0	1	1	1	1	Carbohydrate	kinase
YebG	PF07130.12	gi|384433473|ref|YP_005642831.1|	-	0.023	14.6	0.3	0.073	12.9	0.3	1.9	1	0	0	1	1	1	0	YebG	protein
PfkB	PF00294.24	gi|384433474|ref|YP_005642832.1|	-	7.5e-59	199.5	1.2	8.9e-59	199.2	1.2	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|384433474|ref|YP_005642832.1|	-	1.4e-10	41.0	0.0	2.2e-10	40.3	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Lactamase_B_2	PF12706.7	gi|384433475|ref|YP_005642833.1|	-	2.7e-13	49.9	0.0	1e-12	48.0	0.0	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384433475|ref|YP_005642833.1|	-	4.1e-09	36.7	0.0	5.2e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DUF2100	PF09873.9	gi|384433475|ref|YP_005642833.1|	-	0.011	15.7	0.1	2.2	8.1	0.0	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2100)
Lactamase_B_3	PF13483.6	gi|384433475|ref|YP_005642833.1|	-	0.041	13.8	0.0	0.091	12.7	0.0	1.6	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
GATase_4	PF13230.6	gi|384433476|ref|YP_005642834.1|	-	7.8e-05	21.7	0.0	8.9e-05	21.5	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|384433476|ref|YP_005642834.1|	-	0.081	13.1	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferase	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433477|ref|YP_005642835.1|	-	4.5e-22	77.8	0.3	8.6e-22	76.8	0.3	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|384433477|ref|YP_005642835.1|	-	0.022	14.3	0.2	7.1	6.2	0.0	2.5	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|384433477|ref|YP_005642835.1|	-	0.037	13.4	2.0	6.2	6.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
RuvC_1	PF18516.1	gi|384433477|ref|YP_005642835.1|	-	0.039	13.1	2.0	4	6.6	0.6	3.0	2	1	0	2	2	2	0	RuvC	nuclease	domain
zinc_ribbon_2	PF13240.6	gi|384433477|ref|YP_005642835.1|	-	0.045	13.5	1.5	7.4	6.4	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_methylase	PF00145.17	gi|384433477|ref|YP_005642835.1|	-	0.075	12.4	0.2	0.12	11.7	0.2	1.3	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
DZR	PF12773.7	gi|384433477|ref|YP_005642835.1|	-	0.08	13.0	1.0	0.15	12.1	1.0	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF749	PF05370.11	gi|384433477|ref|YP_005642835.1|	-	0.1	12.7	0.1	0.35	11.0	0.0	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF749)
Rubredoxin_2	PF18073.1	gi|384433477|ref|YP_005642835.1|	-	0.16	11.8	2.7	1.6	8.5	3.2	2.1	1	1	1	2	2	2	0	Rubredoxin	metal	binding	domain
zf-NADH-PPase	PF09297.11	gi|384433477|ref|YP_005642835.1|	-	0.28	10.9	1.4	13	5.6	0.2	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384433477|ref|YP_005642835.1|	-	0.36	10.8	4.9	0.61	10.1	0.5	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|384433477|ref|YP_005642835.1|	-	2.5	8.3	4.8	20	5.4	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Hist_deacetyl	PF00850.19	gi|384433478|ref|YP_005642836.1|	-	1.4e-57	195.5	0.0	2e-57	195.0	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
Peptidase_M24	PF00557.24	gi|384433479|ref|YP_005642837.1|	-	5.6e-59	199.3	0.1	7e-59	199.0	0.1	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|384433479|ref|YP_005642837.1|	-	5.4e-14	53.0	0.1	1.5e-13	51.5	0.0	1.8	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
CREPT	PF16566.5	gi|384433479|ref|YP_005642837.1|	-	0.015	15.5	0.5	0.029	14.5	0.5	1.4	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
NPCBM_assoc	PF10633.9	gi|384433480|ref|YP_005642838.1|	-	3.2e-13	49.7	17.0	0.0058	16.8	0.1	8.6	8	1	1	9	9	9	5	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF3149	PF11346.8	gi|384433480|ref|YP_005642838.1|	-	0.017	14.8	2.7	0.036	13.7	2.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3149)
DUF11	PF01345.18	gi|384433480|ref|YP_005642838.1|	-	0.021	15.1	1.2	0.021	15.1	1.2	7.0	7	3	0	7	7	7	0	Domain	of	unknown	function	DUF11
DUF3657	PF12394.8	gi|384433480|ref|YP_005642838.1|	-	0.063	13.8	0.1	21	5.8	0.0	3.4	3	0	0	3	3	3	0	Protein	FAM135
CARDB	PF07705.11	gi|384433480|ref|YP_005642838.1|	-	0.07	13.4	0.3	0.07	13.4	0.3	6.7	6	1	0	7	7	7	0	CARDB
PRNT	PF15174.6	gi|384433480|ref|YP_005642838.1|	-	0.48	10.5	6.9	7	6.8	0.1	4.7	5	0	0	5	5	5	0	Prion-related	protein	testis-specific
UPF0126	PF03458.13	gi|384433482|ref|YP_005642840.1|	-	2.2e-39	133.2	13.0	1.8e-19	69.4	1.2	2.2	2	0	0	2	2	2	2	UPF0126	domain
TRIC	PF05197.13	gi|384433482|ref|YP_005642840.1|	-	3.7e-05	23.4	2.1	4.7e-05	23.1	1.6	1.3	1	1	0	1	1	1	1	TRIC	channel
Stork_head	PF10264.9	gi|384433483|ref|YP_005642841.1|	-	0.068	13.3	0.1	0.09	13.0	0.1	1.5	1	1	0	1	1	1	0	Winged	helix	Storkhead-box1	domain
TrmB	PF01978.19	gi|384433483|ref|YP_005642841.1|	-	0.071	13.0	0.0	0.081	12.8	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
STAT1_TAZ2bind	PF12162.8	gi|384433483|ref|YP_005642841.1|	-	0.16	11.6	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	STAT1	TAZ2	binding	domain
DUF1634	PF07843.11	gi|384433485|ref|YP_005642843.1|	-	3.3e-30	104.2	8.5	3.9e-30	103.9	8.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1634)
DUF4418	PF14387.6	gi|384433485|ref|YP_005642843.1|	-	0.96	9.7	9.6	3.4	7.9	0.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4418)
YtpI	PF14007.6	gi|384433485|ref|YP_005642843.1|	-	7.9	6.7	11.5	2.5	8.3	2.3	2.5	2	1	0	2	2	2	0	YtpI-like	protein
TauE	PF01925.19	gi|384433486|ref|YP_005642844.1|	-	1.8e-40	139.1	28.2	2.1e-40	138.8	28.2	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF3481	PF11980.8	gi|384433486|ref|YP_005642844.1|	-	0.69	9.7	3.3	14	5.5	1.0	2.5	2	0	0	2	2	2	0	C-terminal	domain	of	neuropilin	glycoprotein
QueC	PF06508.13	gi|384433487|ref|YP_005642845.1|	-	7.5e-60	202.0	0.0	1.1e-59	201.5	0.0	1.2	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
GATase_7	PF13537.6	gi|384433487|ref|YP_005642845.1|	-	4.5e-17	62.1	0.0	8.5e-17	61.2	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|384433487|ref|YP_005642845.1|	-	5.4e-11	42.8	0.0	9.3e-11	42.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
ThiI	PF02568.14	gi|384433487|ref|YP_005642845.1|	-	2.6e-09	36.9	0.0	2.5e-08	33.7	0.0	2.3	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|384433487|ref|YP_005642845.1|	-	1.1e-06	27.7	0.0	3.1e-06	26.2	0.0	1.7	2	0	0	2	2	2	1	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|384433487|ref|YP_005642845.1|	-	0.00052	19.8	0.0	0.00083	19.2	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
Asn_synthase	PF00733.21	gi|384433487|ref|YP_005642845.1|	-	0.013	15.2	0.0	0.018	14.7	0.0	1.1	1	0	0	1	1	1	0	Asparagine	synthase
NAD_synthase	PF02540.17	gi|384433487|ref|YP_005642845.1|	-	0.057	12.5	0.0	0.42	9.7	0.0	2.0	2	0	0	2	2	2	0	NAD	synthase
DEAD	PF00270.29	gi|384433489|ref|YP_005642847.1|	-	2e-24	86.3	0.0	8.9e-23	80.9	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|384433489|ref|YP_005642847.1|	-	3.3e-21	75.7	0.0	8.3e-18	64.8	0.0	2.7	2	0	0	2	2	2	2	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.10	gi|384433489|ref|YP_005642847.1|	-	1.7e-13	51.1	0.2	5.1e-13	49.6	0.2	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
ResIII	PF04851.15	gi|384433489|ref|YP_005642847.1|	-	1.3e-07	31.8	0.0	3.1e-07	30.5	0.0	1.6	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
SecA_DEAD	PF07517.14	gi|384433489|ref|YP_005642847.1|	-	0.00018	20.9	0.0	0.00036	19.9	0.0	1.4	1	0	0	1	1	1	1	SecA	DEAD-like	domain
DUF460	PF04312.13	gi|384433489|ref|YP_005642847.1|	-	0.0029	17.3	0.0	0.01	15.6	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF460)
Fer4_17	PF13534.6	gi|384433490|ref|YP_005642848.1|	-	4.1e-09	36.8	13.1	7.8e-07	29.5	7.2	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384433490|ref|YP_005642848.1|	-	4.3e-09	36.7	4.1	8.5e-09	35.7	4.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384433490|ref|YP_005642848.1|	-	7.3e-08	32.6	0.6	0.0052	17.0	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433490|ref|YP_005642848.1|	-	9.4e-08	32.5	6.3	2e-07	31.5	6.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384433490|ref|YP_005642848.1|	-	1.1e-07	31.4	15.2	0.0011	18.7	4.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|384433490|ref|YP_005642848.1|	-	5.8e-07	30.4	2.1	0.043	14.8	0.1	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|384433490|ref|YP_005642848.1|	-	7.8e-07	29.2	6.5	5.4e-06	26.5	7.3	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433490|ref|YP_005642848.1|	-	4.3e-06	26.7	10.4	0.0003	20.9	11.6	2.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433490|ref|YP_005642848.1|	-	8.1e-06	25.7	13.5	0.0026	17.7	3.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|384433490|ref|YP_005642848.1|	-	1.4e-05	25.7	19.7	0.02	15.8	4.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433490|ref|YP_005642848.1|	-	0.00011	22.3	7.9	0.00028	20.9	7.9	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384433490|ref|YP_005642848.1|	-	0.0002	21.6	11.0	0.0083	16.6	2.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384433490|ref|YP_005642848.1|	-	0.00044	20.2	12.6	0.013	15.5	3.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|384433490|ref|YP_005642848.1|	-	0.0043	17.6	3.6	2.2	8.9	0.0	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_22	PF17179.4	gi|384433490|ref|YP_005642848.1|	-	0.008	17.0	3.3	2.6	8.9	0.3	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|384433490|ref|YP_005642848.1|	-	3	8.7	5.6	30	5.5	0.6	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
MoCF_biosynth	PF00994.24	gi|384433491|ref|YP_005642849.1|	-	6.3e-32	110.2	0.0	7.2e-32	110.0	0.0	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Peroxin-22	PF12827.7	gi|384433492|ref|YP_005642850.1|	-	0.091	12.7	0.0	0.19	11.7	0.0	1.6	1	1	0	1	1	1	0	Peroxisomal	biogenesis	protein	family
DAO	PF01266.24	gi|384433493|ref|YP_005642851.1|	-	1.8e-12	47.6	0.0	1.5e-06	28.1	0.0	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|384433493|ref|YP_005642851.1|	-	0.00064	19.9	0.0	0.0013	18.9	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|384433493|ref|YP_005642851.1|	-	0.00093	18.5	0.0	0.0018	17.6	0.0	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.6	gi|384433493|ref|YP_005642851.1|	-	0.0019	18.6	0.0	0.0033	17.8	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
FAD_binding_3	PF01494.19	gi|384433493|ref|YP_005642851.1|	-	0.0034	16.7	0.0	0.005	16.1	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
TrkA_N	PF02254.18	gi|384433493|ref|YP_005642851.1|	-	0.013	15.8	0.0	0.026	14.8	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|384433493|ref|YP_005642851.1|	-	0.014	15.2	0.0	0.028	14.3	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384433493|ref|YP_005642851.1|	-	0.098	12.0	0.0	0.21	10.9	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384433493|ref|YP_005642851.1|	-	0.17	11.2	0.0	0.23	10.7	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|384433493|ref|YP_005642851.1|	-	0.19	12.3	0.0	0.31	11.6	0.0	1.3	1	0	0	1	1	1	0	XdhC	Rossmann	domain
PDDEXK_3	PF13366.6	gi|384433497|ref|YP_005642855.1|	-	0.0037	17.6	0.0	0.0058	17.0	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
McrBC	PF10117.9	gi|384433497|ref|YP_005642855.1|	-	0.048	12.8	0.2	0.053	12.6	0.2	1.2	1	0	0	1	1	1	0	McrBC	5-methylcytosine	restriction	system	component
ATP-grasp	PF02222.22	gi|384433498|ref|YP_005642856.1|	-	2.5e-42	144.4	0.0	4.9e-42	143.4	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|384433498|ref|YP_005642856.1|	-	6.1e-09	35.7	0.3	1.2e-08	34.7	0.1	1.5	2	0	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.17	gi|384433498|ref|YP_005642856.1|	-	6.5e-09	35.6	0.0	1.2e-08	34.7	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_3	PF02655.14	gi|384433498|ref|YP_005642856.1|	-	1.2e-07	31.9	0.1	2e-07	31.2	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|384433498|ref|YP_005642856.1|	-	0.00015	21.6	0.0	0.00035	20.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RmlD_sub_bind	PF04321.17	gi|384433498|ref|YP_005642856.1|	-	0.0029	16.7	0.0	0.0056	15.8	0.0	1.4	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384433498|ref|YP_005642856.1|	-	0.0045	16.4	0.0	0.0089	15.4	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PurK_C	PF17769.1	gi|384433498|ref|YP_005642856.1|	-	0.0046	16.6	0.0	0.0098	15.6	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
RimK	PF08443.11	gi|384433498|ref|YP_005642856.1|	-	0.0082	15.8	0.0	0.092	12.3	0.0	2.2	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
LAL_C2	PF18603.1	gi|384433498|ref|YP_005642856.1|	-	0.015	15.5	0.0	0.052	13.7	0.0	2.0	1	0	0	1	1	1	0	L-amino	acid	ligase	C-terminal	domain	2
Epimerase	PF01370.21	gi|384433498|ref|YP_005642856.1|	-	0.021	14.3	0.0	0.034	13.6	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
3HCDH_N	PF02737.18	gi|384433498|ref|YP_005642856.1|	-	0.042	13.7	0.2	0.1	12.5	0.1	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ATP-grasp_5	PF13549.6	gi|384433498|ref|YP_005642856.1|	-	0.043	13.3	0.1	0.43	10.0	0.0	2.5	2	1	0	2	2	2	0	ATP-grasp	domain
ATP-grasp_4	PF13535.6	gi|384433498|ref|YP_005642856.1|	-	0.054	13.1	0.3	0.17	11.4	0.3	1.9	1	1	0	1	1	1	0	ATP-grasp	domain
Pyr_redox_2	PF07992.14	gi|384433498|ref|YP_005642856.1|	-	0.074	12.3	0.2	0.28	10.4	0.0	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.15	gi|384433498|ref|YP_005642856.1|	-	0.094	12.9	0.2	0.28	11.3	0.3	1.9	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox	PF00070.27	gi|384433498|ref|YP_005642856.1|	-	0.24	12.0	2.5	1.8	9.2	0.1	3.3	3	1	1	4	4	4	0	Pyridine	nucleotide-disulphide	oxidoreductase
Hist_deacetyl	PF00850.19	gi|384433499|ref|YP_005642857.1|	-	1.7e-74	251.1	0.0	2.1e-74	250.8	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
CBS	PF00571.28	gi|384433500|ref|YP_005642858.1|	-	4.4e-34	116.7	5.2	5.9e-08	33.0	0.0	4.4	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|384433500|ref|YP_005642858.1|	-	0.00012	22.8	1.6	0.00048	20.9	1.6	2.0	1	0	0	1	1	1	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
CN_hydrolase	PF00795.22	gi|384433501|ref|YP_005642859.1|	-	3.7e-15	56.0	0.0	1.2e-14	54.3	0.0	1.8	1	1	0	1	1	1	1	Carbon-nitrogen	hydrolase
AAA_31	PF13614.6	gi|384433504|ref|YP_005642862.1|	-	5e-30	104.7	0.4	1.2e-29	103.4	0.4	1.6	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|384433504|ref|YP_005642862.1|	-	3.6e-12	46.4	0.1	4.7e-12	46.1	0.1	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|384433504|ref|YP_005642862.1|	-	1.6e-11	44.2	2.9	3.6e-10	39.7	2.9	2.1	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|384433504|ref|YP_005642862.1|	-	6e-11	42.1	0.0	7.9e-11	41.7	0.0	1.2	1	0	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|384433504|ref|YP_005642862.1|	-	1.5e-06	27.6	0.5	0.00017	20.9	0.1	2.4	1	1	1	2	2	2	2	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|384433504|ref|YP_005642862.1|	-	0.00064	19.3	0.0	0.088	12.3	0.0	2.2	2	0	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|384433504|ref|YP_005642862.1|	-	0.041	13.3	0.1	0.09	12.2	0.1	1.5	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SRP54	PF00448.22	gi|384433504|ref|YP_005642862.1|	-	0.16	11.6	0.2	0.74	9.4	0.1	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|384433504|ref|YP_005642862.1|	-	0.2	11.2	0.1	3.1	7.3	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
VirC1	PF07015.11	gi|384433504|ref|YP_005642862.1|	-	0.21	10.9	0.0	0.35	10.1	0.0	1.3	1	0	0	1	1	1	0	VirC1	protein
RT_RNaseH_2	PF17919.1	gi|384433507|ref|YP_005642865.1|	-	0.058	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	RNase	H-like	domain	found	in	reverse	transcriptase
PadR	PF03551.14	gi|384433508|ref|YP_005642866.1|	-	2.9e-17	62.4	0.2	5.5e-17	61.5	0.2	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.6	gi|384433508|ref|YP_005642866.1|	-	0.00012	21.9	0.5	0.00012	21.9	0.5	2.2	1	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4364)
RTP	PF02334.16	gi|384433508|ref|YP_005642866.1|	-	0.00013	22.6	1.8	0.00013	22.6	1.8	1.7	1	1	1	2	2	2	1	Replication	terminator	protein
TrmB	PF01978.19	gi|384433508|ref|YP_005642866.1|	-	0.00027	20.8	3.0	0.0053	16.6	1.7	2.9	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|384433508|ref|YP_005642866.1|	-	0.00041	20.3	0.4	0.00041	20.3	0.4	2.1	3	0	0	3	3	3	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|384433508|ref|YP_005642866.1|	-	0.00065	19.5	1.6	0.0024	17.7	0.2	2.3	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain	(DUF1495)
Penicillinase_R	PF03965.16	gi|384433508|ref|YP_005642866.1|	-	0.0016	18.8	0.8	0.0046	17.3	0.7	2.0	1	1	0	1	1	1	1	Penicillinase	repressor
Stork_head	PF10264.9	gi|384433508|ref|YP_005642866.1|	-	0.049	13.8	0.1	0.15	12.2	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	Storkhead-box1	domain
DUF3116	PF11313.8	gi|384433508|ref|YP_005642866.1|	-	0.056	13.3	1.6	0.098	12.5	0.1	2.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3116)
AphA_like	PF14557.6	gi|384433508|ref|YP_005642866.1|	-	0.07	12.8	0.0	0.08	12.7	0.0	1.1	1	0	0	1	1	1	0	Putative	AphA-like	transcriptional	regulator
ThiP_synth	PF10120.9	gi|384433509|ref|YP_005642867.1|	-	2.5e-54	183.3	0.0	2.8e-54	183.2	0.0	1.0	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_33	PF13592.6	gi|384433510|ref|YP_005642868.1|	-	1.6e-15	56.5	0.3	3.6e-14	52.1	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384433510|ref|YP_005642868.1|	-	6.1e-08	32.2	0.1	2.7e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384433510|ref|YP_005642868.1|	-	3.8e-07	30.3	1.3	5.7e-07	29.8	0.2	1.8	2	0	0	2	2	2	1	Transposase
HTH_28	PF13518.6	gi|384433510|ref|YP_005642868.1|	-	6e-07	29.5	0.0	2.4e-06	27.6	0.0	2.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384433510|ref|YP_005642868.1|	-	4e-06	26.9	0.8	8.9e-05	22.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384433510|ref|YP_005642868.1|	-	6.2e-06	26.2	2.8	2.1e-05	24.5	2.8	1.8	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384433510|ref|YP_005642868.1|	-	6.8e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384433510|ref|YP_005642868.1|	-	0.00012	22.6	0.0	0.0004	21.0	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384433510|ref|YP_005642868.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384433510|ref|YP_005642868.1|	-	0.00079	19.6	0.1	0.0018	18.4	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384433510|ref|YP_005642868.1|	-	0.0055	16.4	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384433510|ref|YP_005642868.1|	-	0.0099	16.0	1.6	0.052	13.7	0.1	2.5	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384433510|ref|YP_005642868.1|	-	0.01	14.9	0.1	0.014	14.5	0.1	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384433510|ref|YP_005642868.1|	-	0.01	15.8	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384433510|ref|YP_005642868.1|	-	0.017	15.2	0.1	0.061	13.4	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384433510|ref|YP_005642868.1|	-	0.021	14.2	0.1	0.066	12.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CENP-B_N	PF04218.13	gi|384433510|ref|YP_005642868.1|	-	0.027	14.1	0.0	0.069	12.8	0.0	1.7	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
MerR_1	PF13411.6	gi|384433510|ref|YP_005642868.1|	-	0.03	14.4	0.5	0.14	12.3	0.0	2.3	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|384433510|ref|YP_005642868.1|	-	0.072	13.2	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384433510|ref|YP_005642868.1|	-	0.13	11.9	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DDE_3	PF13358.6	gi|384433511|ref|YP_005642869.1|	-	6.6e-19	68.1	0.0	8.1e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|384433511|ref|YP_005642869.1|	-	0.091	13.0	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
DDE_1	PF03184.19	gi|384433511|ref|YP_005642869.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
COX1	PF00115.20	gi|384433512|ref|YP_005642870.1|	-	2.8e-71	240.6	67.2	2.8e-71	240.6	67.2	2.5	1	1	2	3	3	3	3	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cu-oxidase_3	PF07732.15	gi|384433513|ref|YP_005642871.1|	-	0.041	13.9	3.8	0.68	10.0	0.2	3.7	3	1	0	3	3	3	0	Multicopper	oxidase
ATP-synt_I	PF03899.15	gi|384433514|ref|YP_005642872.1|	-	0.0021	18.4	1.2	0.0027	18.1	1.2	1.1	1	0	0	1	1	1	1	ATP	synthase	I	chain
NADH-u_ox-rdase	PF10785.9	gi|384433514|ref|YP_005642872.1|	-	0.074	13.7	0.8	0.091	13.5	0.8	1.0	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	complex	I,	21	kDa	subunit
TatD_DNase	PF01026.21	gi|384433516|ref|YP_005642874.1|	-	3.9e-54	183.7	0.0	4.4e-54	183.5	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
Amidohydro_1	PF01979.20	gi|384433516|ref|YP_005642874.1|	-	0.056	12.7	0.0	0.076	12.3	0.0	1.3	1	0	0	1	1	1	0	Amidohydrolase	family
MazE_antitoxin	PF04014.18	gi|384433517|ref|YP_005642875.1|	-	4.9e-10	39.1	0.1	5.7e-10	38.9	0.1	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
eIF-1a	PF01176.19	gi|384433517|ref|YP_005642875.1|	-	0.00025	20.8	0.1	0.00032	20.5	0.1	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
PrlF_antitoxin	PF15937.5	gi|384433517|ref|YP_005642875.1|	-	0.00038	20.9	0.1	0.00041	20.7	0.1	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
DUF1905	PF08922.11	gi|384433517|ref|YP_005642875.1|	-	0.075	13.1	0.0	0.1	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
TrmB	PF01978.19	gi|384433518|ref|YP_005642876.1|	-	3.7e-15	55.6	0.1	5.3e-15	55.0	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|384433518|ref|YP_005642876.1|	-	2.7e-06	27.1	0.6	6.6e-06	25.9	0.2	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|384433518|ref|YP_005642876.1|	-	5.5e-06	26.2	0.0	9.4e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|384433518|ref|YP_005642876.1|	-	3.1e-05	23.8	0.1	5.2e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|384433518|ref|YP_005642876.1|	-	0.00031	20.7	0.2	0.00078	19.5	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|384433518|ref|YP_005642876.1|	-	0.00064	19.6	0.1	0.0009	19.1	0.1	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|384433518|ref|YP_005642876.1|	-	0.0018	18.7	0.1	0.0027	18.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|384433518|ref|YP_005642876.1|	-	0.0077	16.4	0.1	0.014	15.6	0.1	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.6	gi|384433518|ref|YP_005642876.1|	-	0.015	15.0	0.6	0.021	14.5	0.1	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_24	PF13412.6	gi|384433518|ref|YP_005642876.1|	-	0.024	14.2	0.1	0.068	12.7	0.1	1.9	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|384433518|ref|YP_005642876.1|	-	0.042	13.8	0.4	0.1	12.5	0.4	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
RP-C	PF03428.13	gi|384433518|ref|YP_005642876.1|	-	0.056	13.1	0.2	0.086	12.5	0.0	1.4	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
DUF2250	PF10007.9	gi|384433518|ref|YP_005642876.1|	-	0.11	12.6	0.3	0.22	11.6	0.1	1.6	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HxlR	PF01638.17	gi|384433518|ref|YP_005642876.1|	-	0.12	12.3	0.1	0.17	11.7	0.1	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
GntR	PF00392.21	gi|384433518|ref|YP_005642876.1|	-	0.14	11.9	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
PadR	PF03551.14	gi|384433519|ref|YP_005642877.1|	-	1.2e-20	73.2	0.0	3e-20	72.0	0.0	1.6	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|384433519|ref|YP_005642877.1|	-	5.2e-05	23.9	0.0	0.00022	21.8	0.0	1.9	1	1	1	2	2	2	1	Replication	terminator	protein
DUF4364	PF14277.6	gi|384433519|ref|YP_005642877.1|	-	5.6e-05	22.9	0.2	0.00018	21.3	0.2	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF505	PF04458.12	gi|384433519|ref|YP_005642877.1|	-	0.00041	18.8	0.0	0.00084	17.8	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_42	PF06224.12	gi|384433519|ref|YP_005642877.1|	-	0.0016	18.1	0.0	0.0018	17.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|384433519|ref|YP_005642877.1|	-	0.0055	16.5	0.0	0.083	12.8	0.0	2.5	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HxlR	PF01638.17	gi|384433519|ref|YP_005642877.1|	-	0.018	14.9	0.0	0.064	13.1	0.0	1.9	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
Stork_head	PF10264.9	gi|384433519|ref|YP_005642877.1|	-	0.025	14.7	0.0	0.065	13.4	0.0	1.7	2	1	0	2	2	2	0	Winged	helix	Storkhead-box1	domain
HTH_27	PF13463.6	gi|384433519|ref|YP_005642877.1|	-	0.026	15.0	0.1	5.3	7.6	0.0	2.7	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
TBPIP	PF07106.13	gi|384433519|ref|YP_005642877.1|	-	0.042	13.8	0.2	4.3	7.4	0.2	2.8	2	1	0	3	3	3	0	TBPIP/Hop2	winged	helix	domain
TrmB	PF01978.19	gi|384433519|ref|YP_005642877.1|	-	0.074	12.9	0.1	0.75	9.7	0.0	2.5	2	2	1	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
Replic_Relax	PF13814.6	gi|384433519|ref|YP_005642877.1|	-	0.092	12.8	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
Sec3_C_2	PF15278.6	gi|384433519|ref|YP_005642877.1|	-	0.16	12.3	1.0	0.25	11.7	1.0	1.2	1	0	0	1	1	1	0	Sec3	exocyst	complex	subunit
ECH_1	PF00378.20	gi|384433520|ref|YP_005642878.1|	-	5.1e-29	101.3	0.0	6.2e-29	101.1	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|384433520|ref|YP_005642878.1|	-	3.6e-14	53.0	0.0	4.7e-14	52.6	0.0	1.1	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
DUF4822	PF16103.5	gi|384433520|ref|YP_005642878.1|	-	0.0035	17.6	0.8	0.0077	16.5	0.8	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4822)
ATPase_2	PF01637.18	gi|384433520|ref|YP_005642878.1|	-	0.045	13.6	0.4	0.084	12.8	0.2	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
ABC2_membrane_3	PF12698.7	gi|384433521|ref|YP_005642879.1|	-	4.9e-14	52.2	41.6	7e-14	51.7	41.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|384433521|ref|YP_005642879.1|	-	7.2e-12	45.2	33.5	1.8e-10	40.6	20.2	2.6	2	1	0	2	2	2	2	ABC-2	type	transporter
FA_desaturase	PF00487.24	gi|384433521|ref|YP_005642879.1|	-	0.72	9.6	4.5	12	5.7	0.5	2.4	2	0	0	2	2	2	0	Fatty	acid	desaturase
ABC_tran	PF00005.27	gi|384433522|ref|YP_005642880.1|	-	6.1e-29	101.3	0.0	9.5e-29	100.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384433522|ref|YP_005642880.1|	-	1.6e-14	54.5	0.0	1.5e-08	34.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|384433522|ref|YP_005642880.1|	-	1.1e-05	25.4	0.0	0.04	13.6	0.0	2.2	1	1	1	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|384433522|ref|YP_005642880.1|	-	0.0011	18.5	0.0	1	8.7	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384433522|ref|YP_005642880.1|	-	0.0061	17.1	1.6	0.012	16.2	1.6	1.8	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|384433522|ref|YP_005642880.1|	-	0.0065	16.4	0.0	0.01	15.8	0.0	1.5	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|384433522|ref|YP_005642880.1|	-	0.015	15.0	0.0	0.05	13.4	0.0	1.8	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
SRP54	PF00448.22	gi|384433522|ref|YP_005642880.1|	-	0.04	13.5	0.1	0.074	12.7	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA	PF00004.29	gi|384433522|ref|YP_005642880.1|	-	0.048	14.1	0.8	0.23	11.9	0.8	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|384433522|ref|YP_005642880.1|	-	0.096	13.0	0.4	0.7	10.2	0.4	2.5	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|384433522|ref|YP_005642880.1|	-	0.098	12.4	0.0	0.29	10.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|384433522|ref|YP_005642880.1|	-	0.1	12.6	0.1	2.8	7.9	0.1	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AIRS_C	PF02769.22	gi|384433523|ref|YP_005642881.1|	-	5.4e-15	55.9	0.1	9.4e-15	55.1	0.1	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|384433523|ref|YP_005642881.1|	-	3.1e-12	47.0	0.2	7.9e-12	45.7	0.2	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
NTP_transf_3	PF12804.7	gi|384433524|ref|YP_005642882.1|	-	3.6e-11	43.7	0.0	1e-10	42.2	0.0	1.6	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|384433524|ref|YP_005642882.1|	-	0.017	14.8	0.0	0.023	14.4	0.0	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF1614	PF07758.11	gi|384433525|ref|YP_005642883.1|	-	1.1e-47	162.2	14.6	1.1e-47	162.2	14.6	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1614)
K1	PF02960.14	gi|384433525|ref|YP_005642883.1|	-	9.1	6.4	8.9	5.5	7.1	0.1	3.0	1	1	2	3	3	3	0	K1	glycoprotein
TrmB	PF01978.19	gi|384433526|ref|YP_005642884.1|	-	0.039	13.8	0.0	0.08	12.8	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Carbpep_Y_N	PF05388.11	gi|384433526|ref|YP_005642884.1|	-	0.075	13.6	1.9	7.1	7.2	0.1	2.3	2	0	0	2	2	2	0	Carboxypeptidase	Y	pro-peptide
Glycos_transf_4	PF00953.21	gi|384433527|ref|YP_005642885.1|	-	3e-33	115.1	18.5	3e-33	115.1	18.5	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	family	4
polyprenyl_synt	PF00348.17	gi|384433528|ref|YP_005642886.1|	-	1.4e-73	247.1	0.0	1.8e-73	246.8	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
DAHP_snth_FXD	PF18152.1	gi|384433528|ref|YP_005642886.1|	-	0.073	12.9	0.7	0.21	11.4	0.1	2.0	2	0	0	2	2	2	0	DAHP	synthase	ferredoxin-like	domain
FMN_dh	PF01070.18	gi|384433529|ref|YP_005642887.1|	-	1.7e-24	86.6	0.0	2.4e-18	66.3	0.0	2.1	1	1	0	2	2	2	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|384433529|ref|YP_005642887.1|	-	0.00011	21.3	1.2	0.18	10.8	0.5	3.0	2	1	1	3	3	3	2	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.17	gi|384433529|ref|YP_005642887.1|	-	0.015	14.5	0.1	0.031	13.4	0.1	1.5	1	0	0	1	1	1	0	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.21	gi|384433529|ref|YP_005642887.1|	-	0.076	12.2	0.5	0.48	9.6	0.1	2.3	2	1	0	2	2	2	0	Dihydroorotate	dehydrogenase
AA_kinase	PF00696.28	gi|384433530|ref|YP_005642888.1|	-	3.5e-21	75.9	0.1	4.8e-21	75.5	0.1	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
Exonuc_VII_L	PF02601.15	gi|384433530|ref|YP_005642888.1|	-	0.025	14.1	0.7	5.6	6.4	0.0	2.1	2	0	0	2	2	2	0	Exonuclease	VII,	large	subunit
LisH	PF08513.11	gi|384433530|ref|YP_005642888.1|	-	0.12	12.4	0.9	0.73	9.9	0.0	2.3	2	0	0	2	2	2	0	LisH
Memo	PF01875.17	gi|384433532|ref|YP_005642890.1|	-	8.3e-100	333.4	0.1	9.5e-100	333.2	0.1	1.0	1	0	0	1	1	1	1	Memo-like	protein
LigB	PF02900.18	gi|384433532|ref|YP_005642890.1|	-	0.00066	18.8	0.1	0.003	16.7	0.1	1.8	1	1	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
PAC2	PF09754.9	gi|384433532|ref|YP_005642890.1|	-	0.15	12.0	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	PAC2	family
Ribosomal_S2	PF00318.20	gi|384433533|ref|YP_005642891.1|	-	1.3e-25	89.9	0.0	6.9e-15	54.9	0.1	2.1	1	1	1	2	2	2	2	Ribosomal	protein	S2
RNA_pol_N	PF01194.17	gi|384433534|ref|YP_005642892.1|	-	1e-30	105.8	0.2	1.2e-30	105.6	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.12	gi|384433534|ref|YP_005642892.1|	-	0.059	13.6	0.2	0.094	13.0	0.2	1.4	1	1	0	1	1	1	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Ribosomal_S9	PF00380.19	gi|384433535|ref|YP_005642893.1|	-	5.4e-27	94.7	0.2	6.1e-27	94.5	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
PcrB	PF01884.17	gi|384433535|ref|YP_005642893.1|	-	0.041	13.3	0.0	0.053	13.0	0.0	1.1	1	0	0	1	1	1	0	PcrB	family
Ribosomal_L13	PF00572.18	gi|384433536|ref|YP_005642894.1|	-	5.4e-12	46.0	0.9	4.5e-10	39.9	0.9	2.3	1	1	0	1	1	1	1	Ribosomal	protein	L13
SPOUT_MTase_2	PF14419.6	gi|384433536|ref|YP_005642894.1|	-	0.049	13.0	0.4	0.086	12.2	0.4	1.3	1	0	0	1	1	1	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Diacid_rec	PF05651.13	gi|384433536|ref|YP_005642894.1|	-	0.071	12.8	0.5	0.11	12.2	0.5	1.3	1	0	0	1	1	1	0	Putative	sugar	diacid	recognition
Ribosomal_L27A	PF00828.19	gi|384433537|ref|YP_005642895.1|	-	2.2e-07	31.6	0.3	5.7e-07	30.3	0.3	1.7	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L18	PF17135.4	gi|384433537|ref|YP_005642895.1|	-	2e-05	24.1	0.1	2.2e-05	23.9	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
RNA_pol_A_bac	PF01000.26	gi|384433538|ref|YP_005642896.1|	-	6.3e-30	103.8	0.0	1.3e-29	102.8	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|384433538|ref|YP_005642896.1|	-	8.7e-12	44.3	0.0	1.1e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Fer4_9	PF13187.6	gi|384433538|ref|YP_005642896.1|	-	4.1e-05	23.7	9.5	0.00068	19.8	2.9	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384433538|ref|YP_005642896.1|	-	0.0036	17.5	3.4	0.044	14.0	0.6	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433538|ref|YP_005642896.1|	-	0.17	12.5	9.5	9.2	6.9	6.1	3.0	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384433538|ref|YP_005642896.1|	-	0.54	10.4	11.8	1.9	8.6	1.5	2.7	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384433538|ref|YP_005642896.1|	-	4.5	7.9	12.5	23	5.6	0.2	2.9	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Ribosomal_S11	PF00411.19	gi|384433539|ref|YP_005642897.1|	-	2.6e-48	163.0	0.9	3.3e-48	162.6	0.9	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.25	gi|384433540|ref|YP_005642898.1|	-	7.4e-18	64.0	0.1	1.4e-17	63.1	0.1	1.5	1	0	0	1	1	1	1	S4	domain
Ribosomal_S4	PF00163.19	gi|384433540|ref|YP_005642898.1|	-	0.00015	22.6	0.7	0.00031	21.6	0.3	1.7	1	1	1	2	2	2	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S13	PF00416.22	gi|384433541|ref|YP_005642899.1|	-	7.9e-47	158.8	0.1	9.6e-47	158.6	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
HHH_4	PF14490.6	gi|384433541|ref|YP_005642899.1|	-	0.002	18.1	0.0	0.0037	17.2	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	containing	domain
HHH_5	PF14520.6	gi|384433541|ref|YP_005642899.1|	-	0.031	14.9	0.1	0.052	14.2	0.1	1.3	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
AIRS	PF00586.24	gi|384433542|ref|YP_005642900.1|	-	1e-06	29.3	0.1	2.5e-06	28.0	0.1	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|384433542|ref|YP_005642900.1|	-	3.5e-06	27.2	0.0	7.2e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
HrpF	PF06266.12	gi|384433542|ref|YP_005642900.1|	-	0.048	14.0	0.0	0.23	11.8	0.0	2.2	2	0	0	2	2	2	0	HrpF	protein
tRNA-synt_1b	PF00579.25	gi|384433544|ref|YP_005642902.1|	-	4.6e-48	164.0	0.7	9.1e-46	156.5	0.7	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Toprim_4	PF13662.6	gi|384433545|ref|YP_005642903.1|	-	5.6e-10	39.6	0.1	2.2e-09	37.7	0.1	2.0	1	0	0	1	1	1	1	Toprim	domain
Toprim_2	PF13155.6	gi|384433545|ref|YP_005642903.1|	-	2e-05	25.0	0.0	0.00022	21.6	0.0	2.4	2	0	0	2	2	2	1	Toprim-like
Toprim	PF01751.22	gi|384433545|ref|YP_005642903.1|	-	8.1e-05	22.8	1.9	0.00013	22.1	0.1	2.4	2	2	0	2	2	2	1	Toprim	domain
HHH_3	PF12836.7	gi|384433545|ref|YP_005642903.1|	-	0.1	12.9	0.5	0.35	11.2	0.1	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DNA_pol_B_exo1	PF03104.19	gi|384433546|ref|YP_005642904.1|	-	1.1e-36	126.6	3.5	1.1e-36	126.6	3.5	3.0	2	2	1	3	3	3	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B	PF00136.21	gi|384433546|ref|YP_005642904.1|	-	1.6e-18	66.7	4.7	1.1e-11	44.1	1.8	2.2	2	0	0	2	2	2	2	DNA	polymerase	family	B
Acetyltransf_1	PF00583.25	gi|384433547|ref|YP_005642905.1|	-	1.1e-20	74.0	0.2	1.5e-20	73.6	0.2	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|384433547|ref|YP_005642905.1|	-	4.2e-14	52.6	0.2	5e-14	52.3	0.2	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|384433547|ref|YP_005642905.1|	-	2.6e-13	50.2	1.0	5e-13	49.3	1.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|384433547|ref|YP_005642905.1|	-	8.3e-08	32.4	0.0	2.9e-06	27.4	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|384433547|ref|YP_005642905.1|	-	3.3e-06	27.3	2.6	5.5e-06	26.6	2.6	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|384433547|ref|YP_005642905.1|	-	0.00061	19.7	0.1	0.0009	19.2	0.1	1.3	1	0	0	1	1	1	1	FR47-like	protein
GNAT_acetyltr_2	PF13718.6	gi|384433547|ref|YP_005642905.1|	-	0.017	14.5	0.1	0.09	12.2	0.0	1.8	1	1	1	2	2	2	0	GNAT	acetyltransferase	2
PanZ	PF12568.8	gi|384433547|ref|YP_005642905.1|	-	0.072	12.8	0.0	0.087	12.6	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
eRF1_3	PF03465.15	gi|384433548|ref|YP_005642906.1|	-	5e-23	81.7	0.7	1.4e-22	80.3	0.4	1.9	2	0	0	2	2	2	1	eRF1	domain	3
eRF1_1	PF03463.15	gi|384433548|ref|YP_005642906.1|	-	6.4e-23	81.2	1.4	8.8e-23	80.7	0.7	1.6	2	0	0	2	2	2	1	eRF1	domain	1
eRF1_2	PF03464.15	gi|384433548|ref|YP_005642906.1|	-	5e-05	23.6	0.1	9.5e-05	22.7	0.1	1.5	1	0	0	1	1	1	1	eRF1	domain	2
baeRF_family2	PF18844.1	gi|384433548|ref|YP_005642906.1|	-	0.0023	18.0	0.0	0.0039	17.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	2
Resolvase	PF00239.21	gi|384433548|ref|YP_005642906.1|	-	0.004	17.3	0.2	0.11	12.6	0.1	2.5	1	1	0	2	2	2	1	Resolvase,	N	terminal	domain
EutQ	PF06249.12	gi|384433548|ref|YP_005642906.1|	-	0.045	13.5	0.6	1	9.1	0.0	2.8	2	1	1	3	3	3	0	Ethanolamine	utilisation	protein	EutQ
AAA_16	PF13191.6	gi|384433548|ref|YP_005642906.1|	-	0.14	12.5	0.2	0.49	10.8	0.2	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
Radical_SAM	PF04055.21	gi|384433549|ref|YP_005642907.1|	-	5.7e-08	33.3	0.5	6.7e-06	26.6	0.3	3.0	2	1	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|384433549|ref|YP_005642907.1|	-	1.5e-07	31.5	0.0	5.5e-07	29.7	0.0	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|384433549|ref|YP_005642907.1|	-	6.4e-06	26.5	0.8	1.9e-05	24.9	0.0	2.1	3	1	0	3	3	3	1	4Fe-4S	single	cluster	domain
DUF1122	PF06557.11	gi|384433550|ref|YP_005642908.1|	-	3.9e-55	186.0	0.5	5.5e-55	185.5	0.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1122)
NTP_transf_2	PF01909.23	gi|384433551|ref|YP_005642909.1|	-	2.4e-06	27.8	0.0	4.7e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384433551|ref|YP_005642909.1|	-	7.3e-06	26.0	0.0	1.4e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
Peptidase_M50	PF02163.22	gi|384433552|ref|YP_005642910.1|	-	1.3e-20	73.8	5.1	3e-20	72.6	5.1	1.6	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|384433552|ref|YP_005642910.1|	-	5.3e-10	39.5	0.0	1.2e-09	38.4	0.0	1.6	2	0	0	2	2	2	1	PDZ	domain
PDZ	PF00595.24	gi|384433552|ref|YP_005642910.1|	-	1.9e-06	28.2	0.0	3.7e-06	27.2	0.0	1.6	1	0	0	1	1	1	1	PDZ	domain
PDZ_6	PF17820.1	gi|384433552|ref|YP_005642910.1|	-	1.9e-05	24.4	0.0	3.4e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|384433552|ref|YP_005642910.1|	-	0.02	14.8	0.0	0.036	14.0	0.0	1.4	1	0	0	1	1	1	0	Tricorn	protease	PDZ	domain
Apq12	PF12716.7	gi|384433552|ref|YP_005642910.1|	-	0.036	14.0	0.9	0.036	14.0	0.9	3.5	4	0	0	4	4	4	0	Nuclear	pore	assembly	and	biogenesis
DUF4730	PF15873.5	gi|384433552|ref|YP_005642910.1|	-	1.1	9.6	4.8	4	7.8	0.0	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4730)
tRNA-synt_2	PF00152.20	gi|384433553|ref|YP_005642911.1|	-	7.6e-86	288.0	0.2	9.4e-86	287.7	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|384433553|ref|YP_005642911.1|	-	6.1e-11	42.2	0.1	1.1e-10	41.3	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|384433553|ref|YP_005642911.1|	-	4.5e-08	32.9	0.3	5.5e-05	22.8	0.0	3.2	3	0	0	3	3	3	2	tRNA	synthetases	class	II	core	domain	(F)
LEM	PF03020.15	gi|384433553|ref|YP_005642911.1|	-	0.0032	17.0	1.8	0.0096	15.5	0.1	2.7	3	0	0	3	3	3	1	LEM	domain
SAP	PF02037.27	gi|384433553|ref|YP_005642911.1|	-	0.0051	16.5	0.4	0.16	11.7	0.0	3.0	3	0	0	3	3	3	1	SAP	domain
HTH_Tnp_IS630	PF01710.16	gi|384433553|ref|YP_005642911.1|	-	0.064	13.3	0.3	0.27	11.3	0.0	2.1	2	0	0	2	2	2	0	Transposase
Ribosomal_L7Ae	PF01248.26	gi|384433554|ref|YP_005642912.1|	-	5.5e-34	115.8	2.0	6.9e-34	115.5	2.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|384433554|ref|YP_005642912.1|	-	1.8e-05	24.5	0.1	2.9e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
RNase_P_pop3	PF08228.11	gi|384433554|ref|YP_005642912.1|	-	0.01	15.9	0.0	0.012	15.6	0.0	1.1	1	0	0	1	1	1	0	RNase	P	subunit	Pop3
DbpA	PF03880.15	gi|384433554|ref|YP_005642912.1|	-	0.027	14.4	1.0	0.25	11.4	0.1	2.7	2	1	1	3	3	3	0	DbpA	RNA	binding	domain
eRF1_3	PF03465.15	gi|384433554|ref|YP_005642912.1|	-	0.11	13.0	0.3	0.15	12.5	0.3	1.3	1	1	0	1	1	1	0	eRF1	domain	3
tRNA-synt_1c	PF00749.21	gi|384433555|ref|YP_005642913.1|	-	9.7e-81	271.1	0.9	8e-80	268.1	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|384433555|ref|YP_005642913.1|	-	9e-25	87.5	1.6	1.9e-24	86.5	1.6	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
Ribosomal_L21p	PF00829.21	gi|384433555|ref|YP_005642913.1|	-	0.013	15.7	0.8	0.031	14.5	0.8	1.6	1	0	0	1	1	1	0	Ribosomal	prokaryotic	L21	protein
Hydrolase_3	PF08282.12	gi|384433556|ref|YP_005642914.1|	-	2.6e-34	119.1	0.1	3.6e-20	72.8	0.1	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|384433556|ref|YP_005642914.1|	-	3.8e-08	33.2	0.2	3.4e-05	23.5	0.0	2.9	2	1	1	3	3	3	1	Sucrose-6F-phosphate	phosphohydrolase
Hydrolase	PF00702.26	gi|384433556|ref|YP_005642914.1|	-	2.7e-07	31.1	0.6	0.01	16.1	0.0	3.2	2	1	1	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|384433556|ref|YP_005642914.1|	-	8.1e-06	26.0	0.6	0.00072	19.7	0.0	3.2	2	1	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|384433556|ref|YP_005642914.1|	-	4.6e-05	23.9	1.6	0.9	9.9	0.0	3.5	1	1	3	4	4	4	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|384433556|ref|YP_005642914.1|	-	0.0057	16.8	0.1	0.12	12.5	0.0	2.4	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Flagellin_IN	PF07196.13	gi|384433556|ref|YP_005642914.1|	-	0.0093	16.1	0.4	0.019	15.1	0.1	1.7	2	0	0	2	2	2	1	Flagellin	hook	IN	motif
Hydrolase_like	PF13242.6	gi|384433556|ref|YP_005642914.1|	-	0.011	15.8	0.0	0.019	15.0	0.0	1.4	1	0	0	1	1	1	0	HAD-hyrolase-like
DUF3944	PF13099.6	gi|384433556|ref|YP_005642914.1|	-	0.082	12.8	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3944)
HD	PF01966.22	gi|384433557|ref|YP_005642915.1|	-	2.2e-10	40.8	0.0	4.9e-10	39.7	0.0	1.6	1	0	0	1	1	1	1	HD	domain
DUF4465	PF14717.6	gi|384433558|ref|YP_005642916.1|	-	0.1	13.0	0.1	0.11	12.9	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4465)
DUF1512	PF07431.12	gi|384433559|ref|YP_005642917.1|	-	1.9e-148	494.2	9.1	2.2e-148	494.0	9.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
N6_N4_Mtase	PF01555.18	gi|384433559|ref|YP_005642917.1|	-	0.12	12.0	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	DNA	methylase
Peptidase_M24	PF00557.24	gi|384433560|ref|YP_005642918.1|	-	1.9e-34	119.2	0.0	2.3e-34	118.9	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Lactamase_B_2	PF12706.7	gi|384433561|ref|YP_005642919.1|	-	5.4e-19	68.5	0.0	6.7e-19	68.2	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|384433561|ref|YP_005642919.1|	-	9.2e-19	67.9	0.1	1.2e-18	67.5	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384433561|ref|YP_005642919.1|	-	3.1e-08	33.8	1.2	5.1e-08	33.2	1.2	1.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Gln_deamidase_2	PF18626.1	gi|384433561|ref|YP_005642919.1|	-	0.12	12.6	0.0	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	Glutaminase
tRNA-synt_2d	PF01409.20	gi|384433562|ref|YP_005642920.1|	-	3.5e-85	285.4	0.0	6e-85	284.6	0.0	1.4	1	1	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|384433562|ref|YP_005642920.1|	-	5.2e-09	35.9	0.0	1.2e-06	28.1	0.0	2.2	2	0	0	2	2	2	2	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
HTH_27	PF13463.6	gi|384433562|ref|YP_005642920.1|	-	4.5e-05	23.9	0.8	0.0014	19.1	0.0	3.0	3	0	0	3	3	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384433562|ref|YP_005642920.1|	-	6.9e-05	22.7	5.1	8.4e-05	22.4	0.6	3.1	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
tRNA-synt_2	PF00152.20	gi|384433562|ref|YP_005642920.1|	-	0.00041	19.5	0.5	0.23	10.5	0.0	2.9	3	1	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
MarR_2	PF12802.7	gi|384433562|ref|YP_005642920.1|	-	0.0013	18.6	1.1	0.081	12.8	0.0	3.2	4	0	0	4	4	4	1	MarR	family
HTH_45	PF14947.6	gi|384433562|ref|YP_005642920.1|	-	0.0043	17.0	0.8	0.051	13.6	0.1	2.5	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|384433562|ref|YP_005642920.1|	-	0.0052	16.3	0.1	0.016	14.7	0.1	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
S10_plectin	PF03501.15	gi|384433562|ref|YP_005642920.1|	-	0.011	15.8	0.3	0.08	13.0	0.0	2.4	2	1	1	3	3	3	0	Plectin/S10	domain
Penicillinase_R	PF03965.16	gi|384433562|ref|YP_005642920.1|	-	0.03	14.7	0.4	0.088	13.2	0.1	2.0	2	0	0	2	2	2	0	Penicillinase	repressor
MarR	PF01047.22	gi|384433562|ref|YP_005642920.1|	-	0.034	14.1	0.3	0.16	11.9	0.1	2.3	2	0	0	2	2	2	0	MarR	family
Fe_dep_repress	PF01325.19	gi|384433562|ref|YP_005642920.1|	-	0.037	14.2	0.2	0.17	12.1	0.1	2.1	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|384433562|ref|YP_005642920.1|	-	0.057	13.8	0.3	0.35	11.2	0.1	2.4	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|384433562|ref|YP_005642920.1|	-	0.11	12.3	0.0	0.31	10.9	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|384433562|ref|YP_005642920.1|	-	0.18	11.8	0.1	0.18	11.8	0.1	2.6	4	0	0	4	4	4	0	Transcriptional	regulator	PadR-like	family
DUF2250	PF10007.9	gi|384433562|ref|YP_005642920.1|	-	2.4	8.3	5.4	16	5.7	0.5	3.0	2	1	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
tRNA_synthFbeta	PF17759.1	gi|384433563|ref|YP_005642921.1|	-	4.8e-40	137.3	0.0	7.8e-40	136.6	0.0	1.3	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|384433563|ref|YP_005642921.1|	-	3.8e-18	65.5	3.5	9.2e-17	61.1	0.8	3.2	3	0	0	3	3	3	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|384433563|ref|YP_005642921.1|	-	9.1e-14	51.5	0.2	2.4e-13	50.1	0.2	1.7	1	1	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|384433563|ref|YP_005642921.1|	-	1.9e-05	24.8	3.6	0.0017	18.5	0.2	4.1	4	2	0	4	4	4	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
Abhydrolase_1	PF00561.20	gi|384433564|ref|YP_005642922.1|	-	8.1e-26	91.2	0.0	3.9e-23	82.4	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|384433564|ref|YP_005642922.1|	-	3.5e-16	60.5	0.0	4.6e-16	60.1	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|384433564|ref|YP_005642922.1|	-	5.5e-15	55.3	0.0	7.3e-15	54.9	0.0	1.2	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Thioesterase	PF00975.20	gi|384433564|ref|YP_005642922.1|	-	0.012	15.8	0.0	0.021	15.0	0.0	1.5	1	1	0	1	1	1	0	Thioesterase	domain
Ndr	PF03096.14	gi|384433564|ref|YP_005642922.1|	-	0.012	14.3	0.0	0.014	14.1	0.0	1.1	1	0	0	1	1	1	0	Ndr	family
DUF915	PF06028.11	gi|384433564|ref|YP_005642922.1|	-	0.033	13.5	0.0	0.15	11.4	0.0	2.0	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
DUF1057	PF06342.12	gi|384433564|ref|YP_005642922.1|	-	0.065	12.3	0.0	7.3	5.5	0.0	2.3	2	1	1	3	3	3	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
SSB	PF00436.25	gi|384433564|ref|YP_005642922.1|	-	0.086	12.9	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Single-strand	binding	protein	family
PGAP1	PF07819.13	gi|384433564|ref|YP_005642922.1|	-	0.1	12.3	0.0	11	5.7	0.0	2.3	2	0	0	2	2	2	0	PGAP1-like	protein
LIDHydrolase	PF10230.9	gi|384433564|ref|YP_005642922.1|	-	0.16	11.5	0.1	0.29	10.7	0.0	1.6	1	1	0	1	1	1	0	Lipid-droplet	associated	hydrolase
MoCF_biosynth	PF00994.24	gi|384433565|ref|YP_005642923.1|	-	3.7e-30	104.5	0.0	5.3e-30	104.0	0.0	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
DUF3888	PF13027.6	gi|384433565|ref|YP_005642923.1|	-	0.022	15.2	1.4	0.043	14.3	1.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3888)
MT	PF12777.7	gi|384433565|ref|YP_005642923.1|	-	0.031	13.3	0.0	0.042	12.9	0.0	1.2	1	0	0	1	1	1	0	Microtubule-binding	stalk	of	dynein	motor
LytR_C	PF13399.6	gi|384433565|ref|YP_005642923.1|	-	0.073	14.1	0.0	0.13	13.3	0.0	1.4	1	0	0	1	1	1	0	LytR	cell	envelope-related	transcriptional	attenuator
HEPN_Toprim_N	PF18871.1	gi|384433565|ref|YP_005642923.1|	-	0.079	12.9	0.0	6.9	6.5	0.0	2.2	2	0	0	2	2	2	0	HEPN/Toprim	N-terminal	domain	1
Aminotran_1_2	PF00155.21	gi|384433566|ref|YP_005642924.1|	-	5.9e-44	150.7	0.0	6.7e-44	150.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.7	gi|384433566|ref|YP_005642924.1|	-	2.4e-12	46.4	0.0	4.3e-12	45.5	0.0	1.4	1	1	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Cys_Met_Meta_PP	PF01053.20	gi|384433566|ref|YP_005642924.1|	-	0.0098	14.5	0.0	0.015	13.9	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|384433566|ref|YP_005642924.1|	-	0.047	13.0	0.0	0.077	12.3	0.0	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
HemX	PF04375.14	gi|384433566|ref|YP_005642924.1|	-	0.085	12.1	0.1	0.21	10.8	0.1	1.6	1	0	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Beta_elim_lyase	PF01212.21	gi|384433566|ref|YP_005642924.1|	-	0.16	11.2	0.0	0.26	10.6	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
ADH_N	PF08240.12	gi|384433567|ref|YP_005642925.1|	-	0.14	12.1	0.0	1.3	8.9	0.0	2.3	2	1	1	3	3	3	0	Alcohol	dehydrogenase	GroES-like	domain
HTH_3	PF01381.22	gi|384433568|ref|YP_005642926.1|	-	5.8e-10	39.1	0.2	3.5e-09	36.6	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix
HTH_11	PF08279.12	gi|384433568|ref|YP_005642926.1|	-	4.6e-05	23.3	1.8	0.00013	21.8	0.1	2.3	2	1	0	2	2	2	1	HTH	domain
HTH_23	PF13384.6	gi|384433568|ref|YP_005642926.1|	-	0.00032	20.4	0.0	0.0006	19.5	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
SKA2	PF16740.5	gi|384433568|ref|YP_005642926.1|	-	0.00043	20.0	0.3	0.00063	19.5	0.2	1.3	1	1	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	2
YdaS_antitoxin	PF15943.5	gi|384433568|ref|YP_005642926.1|	-	0.002	17.9	0.0	0.005	16.7	0.0	1.6	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_24	PF13412.6	gi|384433568|ref|YP_005642926.1|	-	0.0025	17.3	0.0	0.0074	15.8	0.0	1.9	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_31	PF13560.6	gi|384433568|ref|YP_005642926.1|	-	0.0025	18.1	0.0	0.0038	17.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Trp_repressor	PF01371.19	gi|384433568|ref|YP_005642926.1|	-	0.0031	17.6	0.1	0.012	15.8	0.0	1.9	1	1	1	2	2	2	1	Trp	repressor	protein
KORA	PF16509.5	gi|384433568|ref|YP_005642926.1|	-	0.0038	17.5	0.1	0.016	15.4	0.0	1.9	1	1	0	2	2	2	1	TrfB	plasmid	transcriptional	repressor
ADH_zinc_N	PF00107.26	gi|384433568|ref|YP_005642926.1|	-	0.0082	16.1	0.0	0.069	13.1	0.0	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
HTH_10	PF04967.12	gi|384433568|ref|YP_005642926.1|	-	0.01	15.6	0.2	0.03	14.1	0.0	1.9	2	1	0	2	2	2	0	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|384433568|ref|YP_005642926.1|	-	0.014	15.2	0.0	0.046	13.6	0.0	1.8	2	0	0	2	2	2	0	MarR	family
HTH_5	PF01022.20	gi|384433568|ref|YP_005642926.1|	-	0.022	14.6	0.2	0.068	13.0	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF3510	PF12022.8	gi|384433568|ref|YP_005642926.1|	-	0.023	15.1	0.0	0.026	14.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3510)
HTH_19	PF12844.7	gi|384433568|ref|YP_005642926.1|	-	0.027	14.5	0.3	0.13	12.3	0.1	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_min_cap2	PF06152.11	gi|384433568|ref|YP_005642926.1|	-	0.03	13.2	0.3	0.038	12.9	0.3	1.1	1	0	0	1	1	1	0	Phage	minor	capsid	protein	2
IF2_N	PF04760.15	gi|384433568|ref|YP_005642926.1|	-	0.043	13.6	3.0	0.6	10.0	0.0	3.2	2	2	1	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
Phage_T7_Capsid	PF05396.11	gi|384433568|ref|YP_005642926.1|	-	0.045	14.1	0.0	0.072	13.5	0.0	1.3	1	0	0	1	1	1	0	Phage	T7	capsid	assembly	protein
Sigma70_r4_2	PF08281.12	gi|384433568|ref|YP_005642926.1|	-	0.07	12.8	0.0	0.16	11.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Tsc35	PF15079.6	gi|384433568|ref|YP_005642926.1|	-	0.32	10.5	5.2	0.69	9.4	4.9	1.6	1	1	1	2	2	2	0	Testis-specific	protein	35
Ada3	PF10198.9	gi|384433569|ref|YP_005642927.1|	-	0.012	15.7	0.8	0.017	15.3	0.8	1.2	1	0	0	1	1	1	0	Histone	acetyltransferases	subunit	3
ADIP	PF11559.8	gi|384433569|ref|YP_005642927.1|	-	0.016	15.3	0.9	0.02	15.0	0.9	1.1	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
DUF4404	PF14357.6	gi|384433569|ref|YP_005642927.1|	-	0.019	15.6	0.2	0.025	15.2	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
CALCOCO1	PF07888.11	gi|384433569|ref|YP_005642927.1|	-	0.035	13.0	0.0	0.037	12.9	0.0	1.0	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Med21	PF11221.8	gi|384433569|ref|YP_005642927.1|	-	0.039	14.2	0.2	0.052	13.8	0.2	1.1	1	0	0	1	1	1	0	Subunit	21	of	Mediator	complex
FlaC_arch	PF05377.11	gi|384433569|ref|YP_005642927.1|	-	0.043	14.2	1.2	0.075	13.4	1.2	1.3	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
NinB	PF05772.12	gi|384433569|ref|YP_005642927.1|	-	0.057	13.2	0.1	0.063	13.1	0.1	1.2	1	0	0	1	1	1	0	NinB	protein
DivIC	PF04977.15	gi|384433569|ref|YP_005642927.1|	-	0.15	11.8	1.4	0.22	11.3	1.4	1.2	1	0	0	1	1	1	0	Septum	formation	initiator
DUF2192	PF09958.9	gi|384433570|ref|YP_005642928.1|	-	2.6e-80	269.2	8.1	2.9e-80	269.1	8.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
KIX	PF02172.16	gi|384433570|ref|YP_005642928.1|	-	0.085	13.1	0.4	2	8.8	0.1	2.5	2	0	0	2	2	2	0	KIX	domain
HrcA_DNA-bdg	PF03444.15	gi|384433571|ref|YP_005642929.1|	-	2.2e-35	120.1	0.3	2.2e-35	120.1	0.3	2.0	3	0	0	3	3	3	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
CBS	PF00571.28	gi|384433571|ref|YP_005642929.1|	-	1e-26	93.1	1.0	4.8e-14	52.5	0.4	2.7	2	0	0	2	2	2	2	CBS	domain
Rrf2	PF02082.20	gi|384433571|ref|YP_005642929.1|	-	2.8e-08	34.0	0.0	9.7e-08	32.3	0.0	2.0	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|384433571|ref|YP_005642929.1|	-	0.021	14.7	0.2	0.27	11.2	0.0	2.5	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|384433571|ref|YP_005642929.1|	-	0.022	14.5	0.0	0.048	13.5	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|384433571|ref|YP_005642929.1|	-	0.03	14.2	0.0	0.096	12.6	0.0	1.9	2	0	0	2	2	2	0	MarR	family
Sigma70_r4_2	PF08281.12	gi|384433571|ref|YP_005642929.1|	-	0.056	13.1	0.9	3.3	7.5	0.0	2.9	3	0	0	3	3	3	0	Sigma-70,	region	4
PRC	PF05239.16	gi|384433571|ref|YP_005642929.1|	-	0.1	12.7	5.2	15	5.7	0.1	3.9	4	0	0	4	4	4	0	PRC-barrel	domain
DUF4283	PF14111.6	gi|384433572|ref|YP_005642930.1|	-	0.053	13.0	0.0	0.073	12.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4283)
Prok-JAB	PF14464.6	gi|384433572|ref|YP_005642930.1|	-	0.11	12.3	0.0	0.15	11.8	0.0	1.3	1	1	0	1	1	1	0	Prokaryotic	homologs	of	the	JAB	domain
DEAD_assoc	PF08494.11	gi|384433573|ref|YP_005642931.1|	-	4.3e-56	189.8	0.1	9.6e-56	188.6	0.1	1.6	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|384433573|ref|YP_005642931.1|	-	9.1e-29	100.5	0.1	2.1e-27	96.0	0.0	2.7	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|384433573|ref|YP_005642931.1|	-	1.7e-16	60.5	0.2	5e-16	59.0	0.2	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|384433573|ref|YP_005642931.1|	-	5.3e-11	42.8	0.2	3.4e-09	36.9	0.0	2.8	3	0	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Transketolase_C	PF02780.20	gi|384433573|ref|YP_005642931.1|	-	0.00012	21.9	1.1	0.00082	19.2	0.1	2.9	4	0	0	4	4	4	1	Transketolase,	C-terminal	domain
AAA_19	PF13245.6	gi|384433573|ref|YP_005642931.1|	-	0.011	16.0	0.0	4.3	7.7	0.0	3.1	2	1	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|384433573|ref|YP_005642931.1|	-	0.053	12.6	0.0	0.15	11.1	0.0	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Latarcin	PF10279.9	gi|384433573|ref|YP_005642931.1|	-	0.088	13.2	0.0	1.9	8.9	0.0	3.1	2	1	0	2	2	2	0	Latarcin	precursor
CcmH	PF03918.14	gi|384433573|ref|YP_005642931.1|	-	0.11	11.8	0.2	3.3	7.0	0.0	2.3	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein
AAA	PF00004.29	gi|384433573|ref|YP_005642931.1|	-	0.11	12.9	0.0	7.4	7.0	0.0	3.1	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
HARE-HTH	PF05066.13	gi|384433573|ref|YP_005642931.1|	-	0.35	11.3	1.2	1.7	9.1	0.1	2.7	3	0	0	3	3	3	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
Glycos_transf_2	PF00535.26	gi|384433574|ref|YP_005642932.1|	-	3e-19	69.4	0.0	4.9e-19	68.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|384433574|ref|YP_005642932.1|	-	3e-18	66.4	0.9	3e-18	66.4	0.9	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.6	gi|384433574|ref|YP_005642932.1|	-	5.2e-16	59.2	0.0	7.2e-16	58.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|384433574|ref|YP_005642932.1|	-	2.5e-11	43.4	0.0	3.9e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Cellulose_synt	PF03552.14	gi|384433574|ref|YP_005642932.1|	-	9.9e-05	21.0	2.6	0.00016	20.4	2.6	1.3	1	0	0	1	1	1	1	Cellulose	synthase
Glyco_tranf_2_2	PF10111.9	gi|384433574|ref|YP_005642932.1|	-	0.00053	19.5	0.0	0.00079	19.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Phage_holin_5_2	PF16079.5	gi|384433574|ref|YP_005642932.1|	-	6.5	7.2	13.2	0.37	11.1	6.1	2.4	2	0	0	2	2	2	0	Phage	holin	family	Hol44,	in	holin	superfamily	V
ParBc	PF02195.18	gi|384433575|ref|YP_005642933.1|	-	3e-07	30.7	0.0	7.8e-07	29.3	0.0	1.7	2	0	0	2	2	2	1	ParB-like	nuclease	domain
DUF1015	PF06245.11	gi|384433575|ref|YP_005642933.1|	-	0.00074	18.5	0.0	0.19	10.6	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1015)
HhH-GPD	PF00730.25	gi|384433576|ref|YP_005642934.1|	-	2.5e-23	82.6	0.0	3.5e-23	82.1	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|384433576|ref|YP_005642934.1|	-	2.6e-06	27.0	0.4	7.6e-06	25.5	0.1	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|384433576|ref|YP_005642934.1|	-	0.00077	20.0	0.8	0.03	14.9	0.1	2.4	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
HHH_8	PF14716.6	gi|384433576|ref|YP_005642934.1|	-	0.1	13.0	0.1	1.8	9.0	0.0	2.7	3	1	0	3	3	3	0	Helix-hairpin-helix	domain
DUF2400	PF09674.10	gi|384433576|ref|YP_005642934.1|	-	0.14	12.2	0.0	0.36	10.8	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2400)
HTH_45	PF14947.6	gi|384433577|ref|YP_005642935.1|	-	0.0002	21.3	0.0	0.00024	21.0	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF2250	PF10007.9	gi|384433577|ref|YP_005642935.1|	-	0.018	15.2	0.0	1.3	9.1	0.0	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF505	PF04458.12	gi|384433577|ref|YP_005642935.1|	-	0.11	10.9	0.1	0.13	10.6	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF1495	PF07381.11	gi|384433577|ref|YP_005642935.1|	-	0.13	12.1	0.0	0.25	11.2	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
CW_binding_1	PF01473.20	gi|384433578|ref|YP_005642936.1|	-	0.033	14.5	2.0	0.09	13.1	2.0	1.8	1	0	0	1	1	1	0	Putative	cell	wall	binding	repeat
Pilin_N	PF07790.11	gi|384433579|ref|YP_005642937.1|	-	0.0013	19.6	0.2	0.0024	18.8	0.2	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
CPP1-like	PF11833.8	gi|384433579|ref|YP_005642937.1|	-	0.061	13.0	0.5	0.084	12.5	0.5	1.2	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
T2SSE	PF00437.20	gi|384433581|ref|YP_005642939.1|	-	7e-38	130.2	0.0	1e-37	129.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_23	PF13476.6	gi|384433581|ref|YP_005642939.1|	-	6.4e-05	23.6	1.2	0.00023	21.7	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|384433581|ref|YP_005642939.1|	-	0.00052	20.5	0.0	0.002	18.6	0.0	1.9	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|384433581|ref|YP_005642939.1|	-	0.0013	18.7	0.2	0.0034	17.2	0.2	1.7	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384433581|ref|YP_005642939.1|	-	0.0018	17.9	0.0	0.0039	16.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Pox_A32	PF04665.12	gi|384433581|ref|YP_005642939.1|	-	0.0046	16.5	0.0	0.01	15.3	0.0	1.5	1	0	0	1	1	1	1	Poxvirus	A32	protein
DUF87	PF01935.17	gi|384433581|ref|YP_005642939.1|	-	0.0057	16.8	0.5	0.04	14.0	0.1	2.3	2	0	0	2	2	2	1	Helicase	HerA,	central	domain
cobW	PF02492.19	gi|384433581|ref|YP_005642939.1|	-	0.0081	15.8	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_15	PF13175.6	gi|384433581|ref|YP_005642939.1|	-	0.013	15.3	0.5	0.013	15.3	0.5	2.6	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_16	PF13191.6	gi|384433581|ref|YP_005642939.1|	-	0.013	15.9	0.0	0.027	14.9	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|384433581|ref|YP_005642939.1|	-	0.016	15.4	0.0	0.045	14.0	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|384433581|ref|YP_005642939.1|	-	0.018	14.4	0.0	0.032	13.6	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.9	gi|384433581|ref|YP_005642939.1|	-	0.04	12.8	0.0	0.062	12.2	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_7	PF12775.7	gi|384433581|ref|YP_005642939.1|	-	0.059	12.9	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RsgA_GTPase	PF03193.16	gi|384433581|ref|YP_005642939.1|	-	0.062	13.2	0.0	0.16	11.8	0.0	1.7	1	0	0	1	1	1	0	RsgA	GTPase
NACHT	PF05729.12	gi|384433581|ref|YP_005642939.1|	-	0.064	13.2	0.1	0.14	12.1	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.14	gi|384433581|ref|YP_005642939.1|	-	0.069	13.1	0.0	0.2	11.6	0.0	1.8	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
Fructosamin_kin	PF03881.14	gi|384433581|ref|YP_005642939.1|	-	0.072	12.3	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	Fructosamine	kinase
NTPase_1	PF03266.15	gi|384433581|ref|YP_005642939.1|	-	0.091	12.7	0.4	2.7	7.9	0.0	2.9	3	0	0	3	3	2	0	NTPase
MMR_HSR1	PF01926.23	gi|384433581|ref|YP_005642939.1|	-	0.11	12.6	0.0	0.24	11.5	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Methyltr_RsmB-F	PF01189.17	gi|384433583|ref|YP_005642941.1|	-	8.9e-30	103.8	0.0	1.8e-29	102.8	0.0	1.5	2	0	0	2	2	2	1	16S	rRNA	methyltransferase	RsmB/F
MTS	PF05175.14	gi|384433583|ref|YP_005642941.1|	-	0.098	12.2	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
DUF639	PF04842.12	gi|384433584|ref|YP_005642942.1|	-	0.0045	16.4	1.9	0.0047	16.4	1.9	1.0	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF639)
DIX	PF00778.17	gi|384433585|ref|YP_005642943.1|	-	0.068	13.0	0.1	0.23	11.3	0.0	1.9	2	0	0	2	2	2	0	DIX	domain
Pyr_redox_2	PF07992.14	gi|384433586|ref|YP_005642944.1|	-	1.3e-12	47.6	0.0	4.7e-07	29.3	0.1	3.1	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384433586|ref|YP_005642944.1|	-	4.2e-05	24.0	0.0	0.56	10.8	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384433586|ref|YP_005642944.1|	-	0.0077	15.0	0.1	2.4	6.8	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|384433586|ref|YP_005642944.1|	-	0.034	14.4	0.1	0.1	12.8	0.0	1.8	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|384433586|ref|YP_005642944.1|	-	0.056	13.0	0.1	0.15	11.6	0.0	1.7	1	1	1	2	2	2	0	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|384433586|ref|YP_005642944.1|	-	0.11	11.6	2.0	5	6.1	0.2	2.3	1	1	1	2	2	2	0	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|384433586|ref|YP_005642944.1|	-	0.15	11.1	0.0	0.28	10.2	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
STT3_PglB_C	PF18527.1	gi|384433586|ref|YP_005642944.1|	-	0.29	11.3	3.4	0.62	10.2	0.1	2.9	3	0	0	3	3	3	0	STT3/PglB	C-terminal	beta-barrel	domain
UbiA	PF01040.18	gi|384433587|ref|YP_005642945.1|	-	2.2e-39	135.3	21.6	2.7e-39	135.0	21.6	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
HMGL-like	PF00682.19	gi|384433588|ref|YP_005642946.1|	-	3e-57	194.2	0.0	4.4e-57	193.6	0.0	1.2	1	0	0	1	1	1	1	HMGL-like
LeuA_dimer	PF08502.10	gi|384433588|ref|YP_005642946.1|	-	1.1e-22	80.4	0.1	2.3e-22	79.3	0.1	1.6	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
PEP_mutase	PF13714.6	gi|384433588|ref|YP_005642946.1|	-	0.05	13.0	0.0	0.084	12.3	0.0	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
GHL6	PF14871.6	gi|384433588|ref|YP_005642946.1|	-	0.073	13.2	0.1	0.24	11.5	0.1	1.8	1	1	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
Peripla_BP_2	PF01497.18	gi|384433590|ref|YP_005642948.1|	-	1.1e-19	71.0	0.0	1.3e-19	70.7	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
CbiG_N	PF11760.8	gi|384433591|ref|YP_005642949.1|	-	0.0018	18.2	0.0	0.003	17.5	0.0	1.3	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
Arc_PepC_II	PF06847.11	gi|384433592|ref|YP_005642950.1|	-	3.9e-24	85.0	2.8	6.5e-23	81.1	0.2	2.4	2	0	0	2	2	2	2	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|384433592|ref|YP_005642950.1|	-	5.4e-08	33.2	9.4	5.4e-08	33.2	9.4	1.6	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
DUF772	PF05598.11	gi|384433594|ref|YP_005642952.1|	-	1e-08	35.1	0.0	1.6e-08	34.5	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384433595|ref|YP_005642953.1|	-	0.02	14.5	0.0	0.028	14.0	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|384433596|ref|YP_005642954.1|	-	2.8e-16	59.8	0.0	3.6e-16	59.5	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
RHH_1	PF01402.21	gi|384433598|ref|YP_005642956.1|	-	0.014	15.3	0.2	0.016	15.1	0.2	1.1	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
DDE_Tnp_1	PF01609.21	gi|384433599|ref|YP_005642957.1|	-	2.2e-15	56.9	0.4	2.9e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|384433599|ref|YP_005642957.1|	-	2.9e-08	34.0	0.0	9.8e-08	32.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF4298	PF14131.6	gi|384433599|ref|YP_005642957.1|	-	0.046	13.7	0.7	0.24	11.4	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
PAS_12	PF18095.1	gi|384433602|ref|YP_005642960.1|	-	0.055	13.1	0.0	0.057	13.1	0.0	1.1	1	0	0	1	1	1	0	UPF0242	C-terminal	PAS-like	domain
Phage_integr_3	PF16795.5	gi|384433604|ref|YP_005642962.1|	-	4.6e-49	166.4	0.7	3.2e-33	114.9	0.0	2.8	3	1	0	3	3	3	2	Archaeal	phage	integrase
Phage_int_SAM_1	PF02899.17	gi|384433604|ref|YP_005642962.1|	-	0.043	14.1	0.2	0.21	11.9	0.1	2.3	2	0	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
CitMHS	PF03600.16	gi|384433605|ref|YP_005642963.1|	-	2e-37	129.0	23.2	2e-37	129.0	23.2	1.9	1	1	1	2	2	2	1	Citrate	transporter
Na_sulph_symp	PF00939.19	gi|384433605|ref|YP_005642963.1|	-	2.6e-14	53.1	24.7	4e-12	45.9	24.4	2.8	1	1	1	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
DUF3488	PF11992.8	gi|384433605|ref|YP_005642963.1|	-	0.0057	15.6	10.4	0.25	10.2	2.4	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3488)
CitMHS_2	PF16980.5	gi|384433605|ref|YP_005642963.1|	-	0.028	13.1	22.7	1.5	7.4	22.7	2.3	1	1	0	1	1	1	0	Putative	citrate	transport
3HCDH_N	PF02737.18	gi|384433606|ref|YP_005642964.1|	-	0.06	13.2	0.0	0.068	13.1	0.0	1.0	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|384433608|ref|YP_005642966.1|	-	0.0014	18.8	0.0	0.0024	18.0	0.0	1.4	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
zf-C2H2_4	PF13894.6	gi|384433610|ref|YP_005642968.1|	-	0.83	10.7	4.3	15	6.8	0.2	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.26	gi|384433610|ref|YP_005642968.1|	-	1.9	9.1	3.7	22	5.8	3.7	2.2	1	1	0	1	1	1	0	Zinc	finger,	C2H2	type
SIS	PF01380.22	gi|384433611|ref|YP_005642969.1|	-	9.1e-17	61.1	0.1	1.6e-16	60.4	0.1	1.3	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.6	gi|384433611|ref|YP_005642969.1|	-	2.6e-07	30.8	3.1	7.2e-06	26.1	0.4	2.3	1	1	1	2	2	2	2	SIS	domain
PRMT5	PF05185.16	gi|384433611|ref|YP_005642969.1|	-	0.0008	19.3	0.9	0.5	10.2	0.1	2.2	1	1	1	2	2	2	2	PRMT5	arginine-N-methyltransferase
LigB	PF02900.18	gi|384433611|ref|YP_005642969.1|	-	0.071	12.2	0.0	0.17	10.9	0.0	1.6	2	0	0	2	2	2	0	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
DUF5405	PF17399.2	gi|384433611|ref|YP_005642969.1|	-	0.08	13.2	0.0	0.27	11.5	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5405)
AAA_10	PF12846.7	gi|384433612|ref|YP_005642970.1|	-	4.9e-11	42.1	0.1	2.4e-07	30.0	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
DUF853	PF05872.12	gi|384433612|ref|YP_005642970.1|	-	7.6e-07	28.1	0.0	0.0021	16.7	0.0	2.3	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
DUF87	PF01935.17	gi|384433612|ref|YP_005642970.1|	-	2.6e-06	27.7	0.8	2.6e-06	27.7	0.8	2.6	2	1	0	2	2	2	1	Helicase	HerA,	central	domain
FtsK_SpoIIIE	PF01580.18	gi|384433612|ref|YP_005642970.1|	-	3e-06	26.8	0.0	0.00035	20.0	0.1	2.5	2	1	0	2	2	2	1	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.9	gi|384433612|ref|YP_005642970.1|	-	1e-05	24.6	0.1	0.026	13.5	0.0	2.6	3	0	0	3	3	3	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.14	gi|384433612|ref|YP_005642970.1|	-	3.8e-05	22.7	0.7	0.0031	16.4	0.1	2.2	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
TraG-D_C	PF12696.7	gi|384433612|ref|YP_005642970.1|	-	0.00013	21.9	0.0	0.00028	20.9	0.0	1.5	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|384433612|ref|YP_005642970.1|	-	0.0059	16.9	2.9	0.35	11.1	0.1	4.0	4	1	1	5	5	5	1	AAA	domain
T2SSE	PF00437.20	gi|384433612|ref|YP_005642970.1|	-	0.0072	15.4	0.0	0.034	13.2	0.0	1.9	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
SRPRB	PF09439.10	gi|384433612|ref|YP_005642970.1|	-	0.0092	15.4	1.1	2.5	7.5	0.1	2.4	2	0	0	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
ResIII	PF04851.15	gi|384433612|ref|YP_005642970.1|	-	0.029	14.4	0.1	0.2	11.7	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.7	gi|384433612|ref|YP_005642970.1|	-	0.029	13.9	0.3	0.6	9.6	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
SAC3	PF12209.8	gi|384433612|ref|YP_005642970.1|	-	0.041	14.1	0.3	0.12	12.5	0.3	1.8	1	0	0	1	1	1	0	Leucine	permease	transcriptional	regulator	helical	domain
DEAD	PF00270.29	gi|384433612|ref|YP_005642970.1|	-	0.07	12.9	0.1	1.1	9.0	0.0	2.4	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
ABC_tran	PF00005.27	gi|384433612|ref|YP_005642970.1|	-	0.091	13.3	0.0	0.24	11.9	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
AAA_5	PF07728.14	gi|384433612|ref|YP_005642970.1|	-	0.092	12.8	0.1	3	7.9	0.1	2.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Med10	PF09748.9	gi|384433612|ref|YP_005642970.1|	-	0.14	12.1	0.2	0.33	10.9	0.2	1.6	1	0	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
AAA_30	PF13604.6	gi|384433612|ref|YP_005642970.1|	-	0.2	11.4	0.0	0.43	10.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Semialdhyde_dh	PF01118.24	gi|384433614|ref|YP_005642972.1|	-	4.2e-35	120.8	0.0	2.9e-34	118.1	0.0	2.2	3	0	0	3	3	3	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|384433614|ref|YP_005642972.1|	-	1.4e-08	35.0	0.0	2e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
Epimerase	PF01370.21	gi|384433614|ref|YP_005642972.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
AA_kinase	PF00696.28	gi|384433615|ref|YP_005642973.1|	-	8.3e-31	107.4	4.1	9.6e-31	107.2	4.1	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
AsnC_trans_reg	PF01037.21	gi|384433616|ref|YP_005642974.1|	-	1.3e-14	53.9	0.1	2.2e-14	53.1	0.1	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|384433616|ref|YP_005642974.1|	-	8.4e-14	50.9	4.9	3.4e-13	48.9	2.8	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|384433616|ref|YP_005642974.1|	-	6.7e-13	48.2	0.1	1.7e-12	47.0	0.2	1.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|384433616|ref|YP_005642974.1|	-	2.6e-06	27.3	3.8	2.9e-06	27.1	1.2	2.3	3	0	0	3	3	3	1	HTH	domain
NapD	PF03927.13	gi|384433616|ref|YP_005642974.1|	-	3.6e-06	26.9	0.2	7.1e-06	26.0	0.2	1.5	1	1	0	1	1	1	1	NapD	protein
HTH_Mga	PF08280.11	gi|384433616|ref|YP_005642974.1|	-	6.4e-05	22.9	0.6	0.00014	21.8	0.6	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MarR	PF01047.22	gi|384433616|ref|YP_005642974.1|	-	0.00038	20.3	0.5	0.001	19.0	0.3	1.8	2	0	0	2	2	2	1	MarR	family
HTH_DeoR	PF08220.12	gi|384433616|ref|YP_005642974.1|	-	0.00083	19.1	0.3	0.0013	18.4	0.3	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|384433616|ref|YP_005642974.1|	-	0.0039	17.0	0.3	0.0082	16.0	0.2	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PAX	PF00292.18	gi|384433616|ref|YP_005642974.1|	-	0.0041	17.1	0.5	0.076	12.9	0.5	2.2	1	1	0	1	1	1	1	'Paired	box'	domain
RuvB_C	PF05491.13	gi|384433616|ref|YP_005642974.1|	-	0.0082	16.0	0.7	0.021	14.7	0.7	1.6	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
DUF2250	PF10007.9	gi|384433616|ref|YP_005642974.1|	-	0.0086	16.2	0.1	0.016	15.3	0.1	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_5	PF01022.20	gi|384433616|ref|YP_005642974.1|	-	0.0094	15.8	0.1	0.016	15.1	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|384433616|ref|YP_005642974.1|	-	0.011	15.6	0.1	0.018	14.9	0.1	1.3	1	0	0	1	1	1	0	MarR	family
DMAP1_like	PF17024.5	gi|384433616|ref|YP_005642974.1|	-	0.011	15.8	0.2	0.019	15.1	0.2	1.5	1	0	0	1	1	1	0	Putative	DMAP1-like
HTH_20	PF12840.7	gi|384433616|ref|YP_005642974.1|	-	0.012	15.7	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Cullin_Nedd8	PF10557.9	gi|384433616|ref|YP_005642974.1|	-	0.017	15.1	0.6	0.017	15.1	0.6	1.8	2	0	0	2	2	1	0	Cullin	protein	neddylation	domain
HTH_6	PF01418.17	gi|384433616|ref|YP_005642974.1|	-	0.023	14.7	0.1	0.046	13.7	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
Rio2_N	PF09202.11	gi|384433616|ref|YP_005642974.1|	-	0.026	14.7	0.2	0.16	12.2	0.2	2.0	2	0	0	2	2	2	0	Rio2,	N-terminal
HTH_36	PF13730.6	gi|384433616|ref|YP_005642974.1|	-	0.03	14.3	0.2	0.054	13.5	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
AsnC_trans_reg2	PF17805.1	gi|384433616|ref|YP_005642974.1|	-	0.052	13.7	0.0	0.12	12.5	0.0	1.6	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
Rrf2	PF02082.20	gi|384433616|ref|YP_005642974.1|	-	0.065	13.6	0.1	0.16	12.3	0.1	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.10	gi|384433616|ref|YP_005642974.1|	-	0.071	13.2	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
NTase_sub_bind	PF08780.11	gi|384433616|ref|YP_005642974.1|	-	0.075	13.0	0.0	0.096	12.6	0.0	1.3	1	0	0	1	1	1	0	Nucleotidyltransferase	substrate	binding	protein	like
Fe_dep_repress	PF01325.19	gi|384433616|ref|YP_005642974.1|	-	0.094	12.9	0.1	0.25	11.6	0.0	1.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_45	PF14947.6	gi|384433616|ref|YP_005642974.1|	-	0.095	12.7	1.6	0.11	12.6	0.4	1.6	2	0	0	2	2	1	0	Winged	helix-turn-helix
HTH_9	PF08221.11	gi|384433616|ref|YP_005642974.1|	-	0.12	12.5	0.1	0.26	11.4	0.1	1.5	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
YjcQ	PF09639.10	gi|384433616|ref|YP_005642974.1|	-	0.14	12.4	1.3	0.38	11.0	0.3	2.0	1	1	1	2	2	2	0	YjcQ	protein
RPA_C	PF08784.11	gi|384433616|ref|YP_005642974.1|	-	0.16	12.6	0.1	0.38	11.4	0.1	1.6	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
TF_Zn_Ribbon	PF08271.12	gi|384433617|ref|YP_005642975.1|	-	0.0023	17.4	0.3	0.0036	16.8	0.3	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.6	gi|384433617|ref|YP_005642975.1|	-	0.016	15.5	0.1	0.019	15.3	0.1	1.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Prok-RING_1	PF14446.6	gi|384433617|ref|YP_005642975.1|	-	0.026	14.5	0.8	0.037	13.9	0.8	1.4	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DNA_ligase_ZBD	PF03119.16	gi|384433617|ref|YP_005642975.1|	-	0.049	13.7	0.7	0.61	10.2	0.2	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RimK	PF08443.11	gi|384433618|ref|YP_005642976.1|	-	2.8e-32	111.9	0.0	3.8e-32	111.4	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|384433618|ref|YP_005642976.1|	-	2.1e-12	46.8	0.0	3.2e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|384433618|ref|YP_005642976.1|	-	1.9e-06	27.3	0.0	0.00012	21.5	0.0	2.3	2	0	0	2	2	2	1	Sugar-transfer	associated	ATP-grasp
ATP-grasp_3	PF02655.14	gi|384433618|ref|YP_005642976.1|	-	2.2e-06	27.8	0.0	3.4e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|384433618|ref|YP_005642976.1|	-	4.2e-05	23.1	0.0	0.00014	21.5	0.0	1.7	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|384433618|ref|YP_005642976.1|	-	0.00021	20.8	0.0	0.00036	20.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|384433618|ref|YP_005642976.1|	-	0.00047	19.8	0.0	0.017	14.6	0.0	2.6	2	1	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
Ins134_P3_kin	PF05770.11	gi|384433618|ref|YP_005642976.1|	-	0.0037	16.8	0.2	1.1	8.7	0.0	2.3	1	1	1	2	2	2	2	Inositol	1,3,4-trisphosphate	5/6-kinase	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|384433618|ref|YP_005642976.1|	-	0.0041	16.7	0.0	0.0072	15.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|384433618|ref|YP_005642976.1|	-	0.05	13.4	0.0	0.074	12.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATPgrasp_YheCD	PF14398.6	gi|384433618|ref|YP_005642976.1|	-	0.087	12.1	0.4	3.1	7.0	0.0	2.5	3	0	0	3	3	3	0	YheC/D	like	ATP-grasp
Aminotran_3	PF00202.21	gi|384433619|ref|YP_005642977.1|	-	8.2e-109	363.9	0.0	1.1e-108	363.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|384433619|ref|YP_005642977.1|	-	3e-05	23.4	0.0	6.7e-05	22.2	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|384433619|ref|YP_005642977.1|	-	0.018	14.0	0.0	0.035	13.1	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	class-V
Nup54_57_C	PF18570.1	gi|384433619|ref|YP_005642977.1|	-	0.29	10.8	2.8	0.3	10.7	0.2	2.4	2	0	0	2	2	2	0	NUP57/Nup54	C-terminal	domain
Peptidase_M20	PF01546.28	gi|384433620|ref|YP_005642978.1|	-	8.5e-27	94.2	0.0	1e-26	93.9	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|384433620|ref|YP_005642978.1|	-	1.6e-08	34.4	0.0	3.1e-08	33.5	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|384433620|ref|YP_005642978.1|	-	0.028	14.1	0.0	0.041	13.6	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	M28
Prenyltransf	PF01255.19	gi|384433621|ref|YP_005642979.1|	-	2.1e-65	220.4	0.1	2.5e-65	220.2	0.1	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Ribosomal_S8e	PF01201.22	gi|384433622|ref|YP_005642980.1|	-	2.5e-28	99.0	0.2	3e-28	98.7	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
SRP19	PF01922.17	gi|384433623|ref|YP_005642981.1|	-	4.2e-06	27.6	0.1	6e-06	27.1	0.1	1.3	1	0	0	1	1	1	1	SRP19	protein
GDP_Man_Dehyd	PF16363.5	gi|384433624|ref|YP_005642982.1|	-	1.5e-46	159.3	0.1	2.5e-46	158.6	0.1	1.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|384433624|ref|YP_005642982.1|	-	1.9e-46	158.5	0.1	2.3e-46	158.2	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|384433624|ref|YP_005642982.1|	-	1.1e-12	47.6	0.5	1.5e-12	47.2	0.5	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|384433624|ref|YP_005642982.1|	-	1e-11	44.5	0.0	1.3e-11	44.2	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|384433624|ref|YP_005642982.1|	-	3.1e-10	39.7	0.9	3.1e-09	36.4	0.9	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|384433624|ref|YP_005642982.1|	-	3.9e-07	29.5	0.2	0.00018	20.8	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|384433624|ref|YP_005642982.1|	-	0.00012	22.0	0.0	0.00022	21.2	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
KR	PF08659.10	gi|384433624|ref|YP_005642982.1|	-	0.028	14.3	0.6	0.13	12.1	0.2	2.0	1	1	1	2	2	2	0	KR	domain
Epimerase_2	PF02350.19	gi|384433624|ref|YP_005642982.1|	-	0.12	11.2	0.0	0.2	10.5	0.0	1.3	1	0	0	1	1	1	0	UDP-N-acetylglucosamine	2-epimerase
ABC_tran	PF00005.27	gi|384433625|ref|YP_005642983.1|	-	2.3e-34	118.8	0.4	4.1e-17	63.0	0.0	3.3	2	1	1	3	3	3	3	ABC	transporter
AAA_21	PF13304.6	gi|384433625|ref|YP_005642983.1|	-	1.3e-16	61.3	6.0	0.0043	16.9	0.0	4.3	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384433625|ref|YP_005642983.1|	-	4.1e-08	32.8	0.8	0.009	15.7	0.0	2.6	3	0	0	3	3	2	2	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|384433625|ref|YP_005642983.1|	-	1.5e-07	31.5	2.6	6.8e-05	22.8	0.0	2.5	2	1	0	2	2	2	2	NACHT	domain
NB-ARC	PF00931.22	gi|384433625|ref|YP_005642983.1|	-	3.9e-06	26.2	0.1	0.061	12.5	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
AAA_18	PF13238.6	gi|384433625|ref|YP_005642983.1|	-	3.9e-06	27.4	0.2	0.01	16.4	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|384433625|ref|YP_005642983.1|	-	5.3e-06	26.3	0.1	0.12	12.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.19	gi|384433625|ref|YP_005642983.1|	-	6.2e-06	25.8	6.9	0.36	10.2	1.4	4.2	2	2	1	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|384433625|ref|YP_005642983.1|	-	1.3e-05	25.6	0.4	0.011	16.2	0.0	2.7	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.6	gi|384433625|ref|YP_005642983.1|	-	1.5e-05	24.9	12.3	0.0037	17.0	0.7	3.1	2	2	0	3	3	3	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|384433625|ref|YP_005642983.1|	-	2.4e-05	24.8	0.2	0.044	14.2	0.0	2.4	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_14	PF13173.6	gi|384433625|ref|YP_005642983.1|	-	2.5e-05	24.3	0.8	0.2	11.7	0.0	3.2	2	1	1	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|384433625|ref|YP_005642983.1|	-	7.2e-05	23.4	11.5	0.011	16.3	0.4	2.8	1	1	1	2	2	2	2	AAA	domain
AAA_7	PF12775.7	gi|384433625|ref|YP_005642983.1|	-	8.7e-05	22.1	0.1	0.1	12.1	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
Pox_A32	PF04665.12	gi|384433625|ref|YP_005642983.1|	-	0.00011	21.7	0.4	0.37	10.2	0.1	2.7	2	0	0	2	2	2	2	Poxvirus	A32	protein
Roc	PF08477.13	gi|384433625|ref|YP_005642983.1|	-	0.00017	21.8	0.3	0.39	11.0	0.0	2.4	2	0	0	2	2	2	2	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRP54	PF00448.22	gi|384433625|ref|YP_005642983.1|	-	0.00017	21.3	0.1	0.13	11.8	0.0	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
G-alpha	PF00503.20	gi|384433625|ref|YP_005642983.1|	-	0.00019	20.7	1.9	0.11	11.6	0.2	2.1	1	1	0	2	2	2	2	G-protein	alpha	subunit
AAA_22	PF13401.6	gi|384433625|ref|YP_005642983.1|	-	0.0002	21.6	0.0	0.11	12.8	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
DUF3584	PF12128.8	gi|384433625|ref|YP_005642983.1|	-	0.00028	18.6	1.5	0.0072	13.9	0.2	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3584)
cobW	PF02492.19	gi|384433625|ref|YP_005642983.1|	-	0.00033	20.3	0.2	0.37	10.4	0.0	2.4	2	0	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|384433625|ref|YP_005642983.1|	-	0.0005	20.1	0.1	0.082	12.9	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.25	gi|384433625|ref|YP_005642983.1|	-	0.00051	19.8	0.0	0.5	10.0	0.0	2.2	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|384433625|ref|YP_005642983.1|	-	0.00068	19.8	0.0	1.6	8.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
NTPase_1	PF03266.15	gi|384433625|ref|YP_005642983.1|	-	0.0007	19.5	0.8	0.71	9.8	0.0	2.8	2	1	0	2	2	2	1	NTPase
Viral_helicase1	PF01443.18	gi|384433625|ref|YP_005642983.1|	-	0.00072	19.4	0.1	1.3	8.7	0.0	2.6	3	0	0	3	3	2	2	Viral	(Superfamily	1)	RNA	helicase
TsaE	PF02367.17	gi|384433625|ref|YP_005642983.1|	-	0.00077	19.5	0.3	0.24	11.4	0.0	2.5	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
MMR_HSR1	PF01926.23	gi|384433625|ref|YP_005642983.1|	-	0.00082	19.4	0.0	2	8.6	0.0	2.7	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
MobB	PF03205.14	gi|384433625|ref|YP_005642983.1|	-	0.0011	18.8	2.5	0.83	9.5	0.2	2.7	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
VirE	PF05272.11	gi|384433625|ref|YP_005642983.1|	-	0.0013	18.5	0.2	0.68	9.6	0.0	2.3	2	0	0	2	2	2	1	Virulence-associated	protein	E
AAA_25	PF13481.6	gi|384433625|ref|YP_005642983.1|	-	0.0016	18.1	0.1	0.97	9.0	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Arf	PF00025.21	gi|384433625|ref|YP_005642983.1|	-	0.0018	17.8	0.1	0.19	11.2	0.0	2.4	2	0	0	2	2	2	1	ADP-ribosylation	factor	family
AAA_28	PF13521.6	gi|384433625|ref|YP_005642983.1|	-	0.0062	16.8	0.1	0.32	11.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|384433625|ref|YP_005642983.1|	-	0.0068	16.1	0.1	0.95	9.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|384433625|ref|YP_005642983.1|	-	0.0069	16.1	2.1	1.7	8.4	0.1	2.9	4	0	0	4	4	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|384433625|ref|YP_005642983.1|	-	0.0089	15.9	3.3	0.54	10.1	0.0	2.9	2	1	1	3	3	3	1	RsgA	GTPase
SRPRB	PF09439.10	gi|384433625|ref|YP_005642983.1|	-	0.013	15.0	0.4	4.9	6.5	0.0	2.6	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Zeta_toxin	PF06414.12	gi|384433625|ref|YP_005642983.1|	-	0.014	14.7	0.0	3.1	7.0	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
RNA_helicase	PF00910.22	gi|384433625|ref|YP_005642983.1|	-	0.014	15.7	2.4	2.1	8.8	0.0	3.5	3	1	1	4	4	3	0	RNA	helicase
SbcCD_C	PF13558.6	gi|384433625|ref|YP_005642983.1|	-	0.015	15.5	0.0	0.29	11.4	0.0	2.4	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_19	PF13245.6	gi|384433625|ref|YP_005642983.1|	-	0.021	15.2	0.2	3.1	8.1	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|384433625|ref|YP_005642983.1|	-	0.023	14.0	0.1	3	7.1	0.0	2.7	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
DLIC	PF05783.11	gi|384433625|ref|YP_005642983.1|	-	0.031	13.1	0.1	2.2	7.0	0.0	2.1	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
ATP_bind_1	PF03029.17	gi|384433625|ref|YP_005642983.1|	-	0.04	13.7	0.3	10	5.8	0.2	2.5	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
KH_2	PF07650.17	gi|384433625|ref|YP_005642983.1|	-	0.044	13.6	2.0	0.084	12.7	0.1	2.4	2	0	0	2	2	2	0	KH	domain
IstB_IS21	PF01695.17	gi|384433625|ref|YP_005642983.1|	-	0.05	13.3	0.0	7.9	6.2	0.0	2.4	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DnaB_C	PF03796.15	gi|384433625|ref|YP_005642983.1|	-	0.065	12.6	0.0	3	7.1	0.0	2.3	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
AAA_17	PF13207.6	gi|384433625|ref|YP_005642983.1|	-	0.066	13.6	0.3	1.9	8.9	0.0	2.9	3	0	0	3	3	2	0	AAA	domain
CH	PF00307.31	gi|384433625|ref|YP_005642983.1|	-	0.069	13.3	0.0	0.15	12.3	0.0	1.6	1	0	0	1	1	1	0	Calponin	homology	(CH)	domain
AAA_27	PF13514.6	gi|384433625|ref|YP_005642983.1|	-	0.069	12.7	0.0	1.2	8.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|384433625|ref|YP_005642983.1|	-	0.17	10.5	4.0	4.3	5.9	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
CbiA	PF01656.23	gi|384433625|ref|YP_005642983.1|	-	0.19	11.8	0.8	7	6.7	0.3	2.6	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PhoH	PF02562.16	gi|384433625|ref|YP_005642983.1|	-	0.35	10.3	2.1	31	4.0	0.1	3.2	3	1	1	4	4	4	0	PhoH-like	protein
DUF1359	PF07097.11	gi|384433625|ref|YP_005642983.1|	-	2.3	8.5	6.6	5.3	7.3	2.0	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1359)
TPP_enzyme_M	PF00205.22	gi|384433628|ref|YP_005642986.1|	-	6.7e-38	129.5	0.5	2.6e-37	127.6	0.1	2.2	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_N	PF02776.18	gi|384433628|ref|YP_005642986.1|	-	1.1e-20	73.9	0.0	1.9e-20	73.2	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PNTB	PF02233.16	gi|384433628|ref|YP_005642986.1|	-	0.0011	18.0	0.0	0.0021	17.1	0.0	1.4	1	0	0	1	1	1	1	NAD(P)	transhydrogenase	beta	subunit
DUF4974	PF16344.5	gi|384433628|ref|YP_005642986.1|	-	0.23	11.5	1.4	2.1	8.4	0.1	3.2	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4974)
DUF2204	PF09970.9	gi|384433629|ref|YP_005642987.1|	-	5.2e-58	195.7	2.2	5.8e-58	195.5	2.2	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Ribosomal_L40e	PF01020.17	gi|384433630|ref|YP_005642988.1|	-	2.1e-09	37.1	6.1	2.6e-09	36.8	6.1	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
DUF35_N	PF12172.8	gi|384433630|ref|YP_005642988.1|	-	3.7e-05	23.5	0.8	4.1e-05	23.3	0.8	1.1	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|384433630|ref|YP_005642988.1|	-	0.0028	17.6	0.3	0.0032	17.5	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|384433630|ref|YP_005642988.1|	-	0.0028	17.3	1.8	0.0044	16.7	1.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|384433630|ref|YP_005642988.1|	-	0.007	16.4	0.4	0.0075	16.3	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-tcix	PF14952.6	gi|384433630|ref|YP_005642988.1|	-	0.019	14.6	7.5	0.059	13.0	7.5	1.8	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RanBP	PF00641.18	gi|384433630|ref|YP_005642988.1|	-	0.02	14.2	3.1	0.026	13.8	3.1	1.2	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
Paired_CXXCH_1	PF09699.10	gi|384433630|ref|YP_005642988.1|	-	0.037	13.8	2.0	0.038	13.7	0.2	1.8	2	0	0	2	2	2	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
zf-ribbon_3	PF13248.6	gi|384433630|ref|YP_005642988.1|	-	0.062	12.7	1.2	0.089	12.2	1.2	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384433630|ref|YP_005642988.1|	-	0.27	11.4	3.1	1.6	8.9	3.2	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|384433630|ref|YP_005642988.1|	-	0.36	10.6	3.2	0.58	9.9	3.2	1.4	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
RNA_POL_M_15KD	PF02150.16	gi|384433630|ref|YP_005642988.1|	-	0.76	9.7	3.8	1.3	8.9	0.1	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-RRN7	PF11781.8	gi|384433630|ref|YP_005642988.1|	-	2.2	8.0	5.4	17	5.2	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
KH_5	PF13184.6	gi|384433631|ref|YP_005642989.1|	-	0.003	17.6	0.3	0.0058	16.7	0.3	1.4	1	0	0	1	1	1	1	NusA-like	KH	domain
tRNA-synt_2	PF00152.20	gi|384433632|ref|YP_005642990.1|	-	7.5e-92	307.8	0.0	8.8e-92	307.5	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|384433632|ref|YP_005642990.1|	-	8.6e-14	51.3	1.1	2.2e-13	50.0	1.1	1.7	2	0	0	2	2	2	1	OB-fold	nucleic	acid	binding	domain
RBD	PF02196.15	gi|384433632|ref|YP_005642990.1|	-	0.049	13.7	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Raf-like	Ras-binding	domain
MAT1	PF06391.13	gi|384433632|ref|YP_005642990.1|	-	0.06	13.2	0.3	0.095	12.5	0.3	1.2	1	0	0	1	1	1	0	CDK-activating	kinase	assembly	factor	MAT1
tRNA-synt_2d	PF01409.20	gi|384433632|ref|YP_005642990.1|	-	0.11	12.0	0.0	9.2	5.7	0.0	2.3	2	0	0	2	2	2	0	tRNA	synthetases	class	II	core	domain	(F)
TruD	PF01142.18	gi|384433633|ref|YP_005642991.1|	-	1.1e-62	212.2	0.2	3.7e-52	177.6	0.0	2.0	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase	D	(TruD)
DUF3979	PF13141.6	gi|384433633|ref|YP_005642991.1|	-	0.32	11.3	3.0	3.5	7.9	1.4	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3979)
PTH2	PF01981.16	gi|384433634|ref|YP_005642992.1|	-	7.2e-43	145.6	0.1	8e-43	145.5	0.1	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
DUF4898	PF16239.5	gi|384433634|ref|YP_005642992.1|	-	0.025	14.5	0.6	0.54	10.3	0.1	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4898)
DUF1610	PF07754.11	gi|384433635|ref|YP_005642993.1|	-	6.8e-17	61.1	10.9	1.3e-13	50.6	5.5	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.6	gi|384433635|ref|YP_005642993.1|	-	1.4e-08	33.8	7.6	0.00094	18.5	0.1	3.1	3	0	0	3	3	3	3	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433635|ref|YP_005642993.1|	-	3.6e-07	30.0	4.1	5.7e-05	23.0	1.1	2.1	1	1	1	2	2	2	2	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|384433635|ref|YP_005642993.1|	-	6e-06	26.2	4.5	1.2e-05	25.2	4.5	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-C2HC5	PF06221.13	gi|384433635|ref|YP_005642993.1|	-	8.9e-05	22.4	7.6	0.00072	19.5	3.1	2.1	1	1	1	2	2	2	2	Putative	zinc	finger	motif,	C2HC5-type
ADK_lid	PF05191.14	gi|384433635|ref|YP_005642993.1|	-	0.0002	21.3	6.7	0.00089	19.2	1.5	2.5	2	0	0	2	2	2	1	Adenylate	kinase,	active	site	lid
TF_Zn_Ribbon	PF08271.12	gi|384433635|ref|YP_005642993.1|	-	0.00021	20.7	11.9	0.0035	16.8	5.8	3.0	1	1	1	2	2	2	1	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|384433635|ref|YP_005642993.1|	-	0.00022	21.0	6.4	0.72	9.8	0.0	3.1	3	0	0	3	3	3	2	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-NADH-PPase	PF09297.11	gi|384433635|ref|YP_005642993.1|	-	0.00043	19.9	3.0	0.0043	16.7	0.3	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384433635|ref|YP_005642993.1|	-	0.0006	19.4	15.4	0.12	12.1	5.7	3.2	2	1	0	2	2	2	2	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|384433635|ref|YP_005642993.1|	-	0.00068	19.7	7.1	0.26	11.4	0.0	3.3	3	0	0	3	3	3	1	Acetyl-coA	carboxylase	zinc	finger	domain
Auto_anti-p27	PF06677.12	gi|384433635|ref|YP_005642993.1|	-	0.0017	18.5	14.8	0.025	14.7	1.7	2.2	1	1	1	2	2	2	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-RING_7	PF02591.15	gi|384433635|ref|YP_005642993.1|	-	0.004	17.3	9.9	0.68	10.2	0.3	3.2	3	0	0	3	3	3	1	C4-type	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|384433635|ref|YP_005642993.1|	-	0.0042	16.6	5.1	5.6	6.7	0.2	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-LITAF-like	PF10601.9	gi|384433635|ref|YP_005642993.1|	-	0.0043	17.3	7.2	0.13	12.5	0.0	3.0	2	1	1	3	3	3	1	LITAF-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|384433635|ref|YP_005642993.1|	-	0.0044	16.9	5.5	1.2	9.1	0.0	3.2	3	0	0	3	3	3	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384433635|ref|YP_005642993.1|	-	0.0046	17.1	10.0	0.054	13.6	4.3	2.4	1	1	2	3	3	3	2	Zinc	ribbon	domain
HypA	PF01155.19	gi|384433635|ref|YP_005642993.1|	-	0.0048	16.9	4.7	0.0082	16.1	0.3	2.0	1	1	1	2	2	2	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_10	PF10058.9	gi|384433635|ref|YP_005642993.1|	-	0.0051	16.5	10.6	0.75	9.6	0.6	2.9	2	1	0	2	2	2	2	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zinc-ribbons_6	PF07191.12	gi|384433635|ref|YP_005642993.1|	-	0.0058	16.6	4.1	0.011	15.8	4.1	1.5	1	1	0	1	1	1	1	zinc-ribbons
zinc_ribbon_15	PF17032.5	gi|384433635|ref|YP_005642993.1|	-	0.01	16.5	3.9	0.039	14.7	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	family
Nudix_N_2	PF14803.6	gi|384433635|ref|YP_005642993.1|	-	0.011	15.6	8.8	5.8	6.9	5.2	3.3	2	1	0	2	2	2	0	Nudix	N-terminal
Rubredoxin_2	PF18073.1	gi|384433635|ref|YP_005642993.1|	-	0.013	15.3	6.9	1.3	8.8	0.1	3.2	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
zf-CHY	PF05495.12	gi|384433635|ref|YP_005642993.1|	-	0.014	15.9	5.3	0.34	11.4	5.3	2.0	1	1	0	1	1	1	0	CHY	zinc	finger
NOB1_Zn_bind	PF08772.11	gi|384433635|ref|YP_005642993.1|	-	0.02	15.1	5.5	0.027	14.6	0.7	2.1	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HscB_4_cys	PF18256.1	gi|384433635|ref|YP_005642993.1|	-	0.023	14.5	7.3	0.088	12.6	1.4	2.4	2	0	0	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
DUF1272	PF06906.11	gi|384433635|ref|YP_005642993.1|	-	0.028	14.5	8.8	1.2	9.2	1.9	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf-HIT	PF04438.16	gi|384433635|ref|YP_005642993.1|	-	0.031	14.2	8.9	0.19	11.6	1.2	3.0	3	0	0	3	3	3	0	HIT	zinc	finger
DHHC	PF01529.20	gi|384433635|ref|YP_005642993.1|	-	0.038	14.1	1.5	0.038	14.1	1.5	1.3	1	1	0	1	1	1	0	DHHC	palmitoyltransferase
C1_2	PF03107.16	gi|384433635|ref|YP_005642993.1|	-	0.049	14.0	7.2	2.9	8.3	0.9	2.1	1	1	1	2	2	2	0	C1	domain
zf-UDP	PF14569.6	gi|384433635|ref|YP_005642993.1|	-	0.055	13.6	4.3	0.068	13.3	4.3	1.1	1	0	0	1	1	1	0	Zinc-binding	RING-finger
NinF	PF05810.12	gi|384433635|ref|YP_005642993.1|	-	0.057	13.3	2.8	0.23	11.4	0.2	2.3	1	1	1	2	2	2	0	NinF	protein
CK_II_beta	PF01214.18	gi|384433635|ref|YP_005642993.1|	-	0.066	13.0	1.6	0.084	12.7	1.6	1.3	1	1	0	1	1	1	0	Casein	kinase	II	regulatory	subunit
zf-RRN7	PF11781.8	gi|384433635|ref|YP_005642993.1|	-	0.11	12.2	5.1	7.8	6.3	0.1	3.1	3	0	0	3	3	3	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
IBR	PF01485.21	gi|384433635|ref|YP_005642993.1|	-	0.11	12.7	7.7	0.26	11.5	2.9	2.1	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
Zn_ribbon_SprT	PF17283.2	gi|384433635|ref|YP_005642993.1|	-	0.11	12.4	10.4	0.8	9.7	1.8	2.8	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
Acetone_carb_G	PF08882.11	gi|384433635|ref|YP_005642993.1|	-	0.11	12.6	6.6	1.1	9.4	1.0	2.4	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
zf-B_box	PF00643.24	gi|384433635|ref|YP_005642993.1|	-	0.13	12.4	6.9	0.8	9.9	1.7	2.8	2	1	0	2	2	2	0	B-box	zinc	finger
zf-C3HC4_4	PF15227.6	gi|384433635|ref|YP_005642993.1|	-	0.14	12.3	6.0	1.1	9.5	0.8	2.2	2	0	0	2	2	2	0	zinc	finger	of	C3HC4-type,	RING
Sgf11	PF08209.11	gi|384433635|ref|YP_005642993.1|	-	0.15	11.6	7.7	2.9	7.5	0.3	3.2	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Spt4	PF06093.13	gi|384433635|ref|YP_005642993.1|	-	0.17	12.0	4.7	0.24	11.5	0.6	2.1	1	1	1	2	2	2	0	Spt4/RpoE2	zinc	finger
DpnI	PF06044.12	gi|384433635|ref|YP_005642993.1|	-	0.19	11.3	3.0	0.16	11.6	2.4	1.3	1	1	0	1	1	1	0	Dam-replacing	family
C1_1	PF00130.22	gi|384433635|ref|YP_005642993.1|	-	0.21	11.5	4.8	0.084	12.8	1.2	1.9	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
LIM	PF00412.22	gi|384433635|ref|YP_005642993.1|	-	0.22	11.8	5.0	9.6	6.5	5.0	2.1	1	1	0	1	1	1	0	LIM	domain
zf_Rg	PF17915.1	gi|384433635|ref|YP_005642993.1|	-	0.22	11.0	5.8	3.1	7.3	0.1	2.6	3	0	0	3	3	2	0	Reverse	gyrase	zinc	finger
PHD	PF00628.29	gi|384433635|ref|YP_005642993.1|	-	0.25	11.3	8.7	58	3.7	8.9	2.9	1	1	0	1	1	1	0	PHD-finger
YhfH	PF14149.6	gi|384433635|ref|YP_005642993.1|	-	0.3	11.1	8.4	5	7.2	0.2	3.2	2	1	1	3	3	3	0	YhfH-like	protein
zf-C2H2	PF00096.26	gi|384433635|ref|YP_005642993.1|	-	0.31	11.6	10.2	0.45	11.1	0.5	3.1	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
Rubredoxin	PF00301.20	gi|384433635|ref|YP_005642993.1|	-	0.32	11.1	6.4	4.5	7.4	0.1	3.0	2	1	1	3	3	3	0	Rubredoxin
MqsA_antitoxin	PF15731.5	gi|384433635|ref|YP_005642993.1|	-	0.34	11.0	2.7	3.5	7.7	0.1	2.4	1	1	2	3	3	2	0	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
DUF2321	PF10083.9	gi|384433635|ref|YP_005642993.1|	-	0.35	10.5	4.0	2	8.0	4.4	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
zf-Mss51	PF13824.6	gi|384433635|ref|YP_005642993.1|	-	0.37	10.9	9.8	5.1	7.3	4.2	2.5	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Anti-TRAP	PF15777.5	gi|384433635|ref|YP_005642993.1|	-	0.42	10.6	7.6	0.19	11.7	1.1	2.1	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Rpr2	PF04032.16	gi|384433635|ref|YP_005642993.1|	-	0.52	10.6	6.2	55	4.1	6.3	2.8	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zinc_ribbon_9	PF14369.6	gi|384433635|ref|YP_005642993.1|	-	0.58	10.5	12.8	3.6	7.9	0.7	3.4	2	2	1	3	3	3	0	zinc-ribbon
RNA_POL_M_15KD	PF02150.16	gi|384433635|ref|YP_005642993.1|	-	0.59	10.0	7.4	4.3	7.3	4.3	2.6	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Elf1	PF05129.13	gi|384433635|ref|YP_005642993.1|	-	0.61	10.2	4.3	0.26	11.3	1.0	1.8	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-MYND	PF01753.18	gi|384433635|ref|YP_005642993.1|	-	0.61	10.2	6.8	0.86	9.8	0.7	2.1	2	0	0	2	2	2	0	MYND	finger
Ribosomal_L37ae	PF01780.19	gi|384433635|ref|YP_005642993.1|	-	0.66	10.1	3.8	9	6.5	0.3	2.6	1	1	2	3	3	3	0	Ribosomal	L37ae	protein	family
PhnA_Zn_Ribbon	PF08274.12	gi|384433635|ref|YP_005642993.1|	-	0.8	9.7	9.1	2.8	8.0	0.3	3.1	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
DNA_ligase_ZBD	PF03119.16	gi|384433635|ref|YP_005642993.1|	-	1.2	9.3	10.6	0.28	11.2	5.5	2.5	1	1	1	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.19	gi|384433635|ref|YP_005642993.1|	-	1.3	8.9	11.2	0.85	9.5	0.2	3.3	1	1	2	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Ribosomal_L32p	PF01783.23	gi|384433635|ref|YP_005642993.1|	-	1.4	9.3	9.3	35	4.7	5.7	3.0	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
zf_C2H2_10	PF18414.1	gi|384433635|ref|YP_005642993.1|	-	1.5	8.5	0.1	1.5	8.5	0.1	2.8	4	0	0	4	4	2	0	C2H2	type	zinc-finger
zf-ISL3	PF14690.6	gi|384433635|ref|YP_005642993.1|	-	1.7	9.3	10.0	6.7	7.5	0.5	3.1	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Terminase_GpA	PF05876.12	gi|384433635|ref|YP_005642993.1|	-	2	6.8	5.5	8.6	4.8	5.4	1.7	1	1	1	2	2	2	0	Phage	terminase	large	subunit	(GpA)
DUF2072	PF09845.9	gi|384433635|ref|YP_005642993.1|	-	2.5	8.4	9.0	0.38	11.0	2.1	2.1	1	1	0	2	2	2	0	Zn-ribbon	containing	protein
Zn_ribbon_recom	PF13408.6	gi|384433635|ref|YP_005642993.1|	-	3	8.5	9.7	0.44	11.1	3.9	2.0	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384433635|ref|YP_005642993.1|	-	3.6	7.6	14.5	11	6.1	1.7	3.2	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
CpXC	PF14353.6	gi|384433635|ref|YP_005642993.1|	-	4.4	7.4	8.3	16	5.5	0.5	2.9	1	1	2	3	3	3	0	CpXC	protein
zf-C2H2_4	PF13894.6	gi|384433635|ref|YP_005642993.1|	-	5.2	8.2	10.2	9.6	7.4	0.5	3.2	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-FPG_IleRS	PF06827.14	gi|384433635|ref|YP_005642993.1|	-	8.1	6.4	11.4	19	5.2	0.9	2.8	2	1	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-H2C2_2	PF13465.6	gi|384433635|ref|YP_005642993.1|	-	8.2	7.0	11.5	2.5	8.7	0.9	3.2	2	2	1	3	3	3	0	Zinc-finger	double	domain
EF1_GNE	PF00736.19	gi|384433636|ref|YP_005642994.1|	-	8.4e-18	64.3	0.1	9.4e-18	64.2	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
AAA	PF00004.29	gi|384433637|ref|YP_005642995.1|	-	2.1e-97	322.6	0.0	3.9e-48	163.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|384433637|ref|YP_005642995.1|	-	1.2e-33	114.7	2.0	1.8e-15	56.4	0.5	3.2	3	0	0	3	3	3	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|384433637|ref|YP_005642995.1|	-	3.9e-33	113.5	2.9	1.4e-32	111.7	1.7	2.4	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.12	gi|384433637|ref|YP_005642995.1|	-	1.3e-16	60.7	0.0	4.6e-08	33.0	0.0	2.9	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|384433637|ref|YP_005642995.1|	-	7.8e-16	57.6	1.0	7.8e-16	57.6	1.0	2.0	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_2	PF07724.14	gi|384433637|ref|YP_005642995.1|	-	9.5e-14	51.9	0.0	3.6e-06	27.2	0.0	3.3	3	0	0	3	3	3	2	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|384433637|ref|YP_005642995.1|	-	1.6e-12	48.1	0.1	4.8e-06	27.0	0.0	3.5	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|384433637|ref|YP_005642995.1|	-	9.9e-12	45.3	0.5	0.0045	17.3	0.0	4.5	2	2	2	4	4	4	2	AAA	domain
AAA_5	PF07728.14	gi|384433637|ref|YP_005642995.1|	-	2.9e-11	43.5	3.2	0.00073	19.5	0.1	5.0	4	2	0	4	4	3	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|384433637|ref|YP_005642995.1|	-	9.3e-11	41.5	0.0	0.00016	21.0	0.0	2.8	2	0	0	2	2	2	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|384433637|ref|YP_005642995.1|	-	6.4e-10	39.4	0.0	0.0019	18.4	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|384433637|ref|YP_005642995.1|	-	1.3e-09	38.1	0.0	0.00084	19.1	0.0	2.9	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|384433637|ref|YP_005642995.1|	-	3.5e-09	37.3	0.0	0.0051	17.3	0.0	3.2	3	0	0	3	3	2	2	AAA	domain
Vps4_C	PF09336.10	gi|384433637|ref|YP_005642995.1|	-	4.3e-09	36.2	2.9	2.3e-06	27.5	0.7	3.0	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_14	PF13173.6	gi|384433637|ref|YP_005642995.1|	-	2.1e-08	34.2	0.0	0.0066	16.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|384433637|ref|YP_005642995.1|	-	2.7e-07	30.2	0.7	0.009	15.4	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|384433637|ref|YP_005642995.1|	-	9.6e-07	28.7	0.1	0.034	13.9	0.1	2.9	2	1	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|384433637|ref|YP_005642995.1|	-	1e-06	29.1	0.0	0.022	15.2	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
Sigma54_activat	PF00158.26	gi|384433637|ref|YP_005642995.1|	-	1.7e-06	27.9	0.0	0.25	11.0	0.0	4.2	3	1	0	3	3	3	2	Sigma-54	interaction	domain
AAA_28	PF13521.6	gi|384433637|ref|YP_005642995.1|	-	2e-06	28.2	0.0	0.051	13.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|384433637|ref|YP_005642995.1|	-	1e-05	25.4	0.0	0.069	13.0	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|384433637|ref|YP_005642995.1|	-	1e-05	25.6	0.4	0.019	14.9	0.1	3.5	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
ABC_tran	PF00005.27	gi|384433637|ref|YP_005642995.1|	-	1.1e-05	26.0	0.0	0.07	13.6	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
TsaE	PF02367.17	gi|384433637|ref|YP_005642995.1|	-	1.3e-05	25.2	0.0	0.24	11.4	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Zeta_toxin	PF06414.12	gi|384433637|ref|YP_005642995.1|	-	1.3e-05	24.6	1.9	0.097	11.9	0.0	3.7	3	1	1	4	4	4	2	Zeta	toxin
NACHT	PF05729.12	gi|384433637|ref|YP_005642995.1|	-	3.8e-05	23.7	0.4	0.32	10.9	0.0	2.8	2	1	0	2	2	2	2	NACHT	domain
Parvo_NS1	PF01057.17	gi|384433637|ref|YP_005642995.1|	-	3.9e-05	22.9	0.6	0.15	11.1	0.0	2.9	3	0	0	3	3	3	2	Parvovirus	non-structural	protein	NS1
AAA_7	PF12775.7	gi|384433637|ref|YP_005642995.1|	-	5.2e-05	22.8	0.0	0.38	10.2	0.0	2.7	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
DUF815	PF05673.13	gi|384433637|ref|YP_005642995.1|	-	0.00013	21.2	0.0	0.16	11.1	0.0	2.8	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
ATPase	PF06745.13	gi|384433637|ref|YP_005642995.1|	-	0.00021	20.7	2.2	0.27	10.5	0.0	3.8	5	0	0	5	5	3	1	KaiC
Bac_DnaA	PF00308.18	gi|384433637|ref|YP_005642995.1|	-	0.00023	21.1	0.0	0.047	13.5	0.0	2.9	2	2	0	2	2	2	1	Bacterial	dnaA	protein
NB-ARC	PF00931.22	gi|384433637|ref|YP_005642995.1|	-	0.00033	19.9	0.0	0.18	11.0	0.0	2.9	3	0	0	3	3	3	1	NB-ARC	domain
AAA_17	PF13207.6	gi|384433637|ref|YP_005642995.1|	-	0.00046	20.6	0.1	0.95	9.9	0.0	3.3	3	0	0	3	3	2	1	AAA	domain
AAA_25	PF13481.6	gi|384433637|ref|YP_005642995.1|	-	0.0012	18.5	6.1	0.44	10.1	0.4	3.8	2	2	0	3	3	3	2	AAA	domain
PhoH	PF02562.16	gi|384433637|ref|YP_005642995.1|	-	0.0016	18.0	0.2	0.38	10.2	0.1	2.5	2	0	0	2	2	2	1	PhoH-like	protein
UFD1	PF03152.14	gi|384433637|ref|YP_005642995.1|	-	0.0017	17.8	0.0	0.0059	16.1	0.0	1.9	1	1	1	2	2	2	1	Ubiquitin	fusion	degradation	protein	UFD1
AFG1_ATPase	PF03969.16	gi|384433637|ref|YP_005642995.1|	-	0.0019	17.2	0.1	1.6	7.6	0.0	2.4	2	1	0	2	2	2	2	AFG1-like	ATPase
AAA_19	PF13245.6	gi|384433637|ref|YP_005642995.1|	-	0.0021	18.4	0.5	2.9	8.2	0.0	3.1	2	1	1	3	3	3	1	AAA	domain
Guanylate_kin	PF00625.21	gi|384433637|ref|YP_005642995.1|	-	0.0056	16.4	0.1	15	5.2	0.0	3.9	2	2	2	4	4	4	0	Guanylate	kinase
NTPase_1	PF03266.15	gi|384433637|ref|YP_005642995.1|	-	0.0062	16.5	2.3	4.6	7.1	0.0	4.2	3	1	1	4	4	4	0	NTPase
TniB	PF05621.11	gi|384433637|ref|YP_005642995.1|	-	0.007	15.8	0.0	1.9	7.8	0.0	2.8	3	0	0	3	3	2	1	Bacterial	TniB	protein
AAA_11	PF13086.6	gi|384433637|ref|YP_005642995.1|	-	0.016	15.0	0.2	1.6	8.4	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
Rad17	PF03215.15	gi|384433637|ref|YP_005642995.1|	-	0.019	14.9	0.0	5.2	6.9	0.0	2.8	2	1	1	3	3	3	0	Rad17	P-loop	domain
PduV-EutP	PF10662.9	gi|384433637|ref|YP_005642995.1|	-	0.019	14.7	0.0	7.3	6.3	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_30	PF13604.6	gi|384433637|ref|YP_005642995.1|	-	0.019	14.7	0.5	3.6	7.3	0.2	2.5	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|384433637|ref|YP_005642995.1|	-	0.023	14.4	0.0	2.6	7.7	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Viral_helicase1	PF01443.18	gi|384433637|ref|YP_005642995.1|	-	0.024	14.4	0.0	1.7	8.3	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Sigma54_activ_2	PF14532.6	gi|384433637|ref|YP_005642995.1|	-	0.027	14.6	0.0	11	6.1	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
IPT	PF01745.16	gi|384433637|ref|YP_005642995.1|	-	0.034	13.5	0.1	1.4	8.3	0.0	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
DUF2075	PF09848.9	gi|384433637|ref|YP_005642995.1|	-	0.039	13.2	0.0	6	6.0	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_29	PF13555.6	gi|384433637|ref|YP_005642995.1|	-	0.073	12.8	0.0	14	5.5	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|384433637|ref|YP_005642995.1|	-	0.075	13.1	0.0	7.5	6.7	0.0	3.4	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|384433637|ref|YP_005642995.1|	-	0.1	12.8	0.0	12	6.1	0.0	2.6	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
ResIII	PF04851.15	gi|384433637|ref|YP_005642995.1|	-	0.13	12.3	0.0	15	5.6	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
SPT16	PF08644.11	gi|384433637|ref|YP_005642995.1|	-	0.22	11.7	1.6	0.77	9.9	0.1	2.2	2	0	0	2	2	2	0	FACT	complex	subunit	(SPT16/CDC68)
La	PF05383.17	gi|384433638|ref|YP_005642996.1|	-	0.021	14.9	0.1	0.055	13.5	0.0	1.8	1	1	1	2	2	2	0	La	domain
Hema_stalk	PF08720.10	gi|384433638|ref|YP_005642996.1|	-	0.11	12.2	0.1	0.12	12.1	0.1	1.1	1	0	0	1	1	1	0	Influenza	C	hemagglutinin	stalk
XPG_I	PF00867.18	gi|384433639|ref|YP_005642997.1|	-	5.5e-27	94.0	0.0	1.4e-26	92.7	0.0	1.7	2	0	0	2	2	2	1	XPG	I-region
XPG_N	PF00752.17	gi|384433639|ref|YP_005642997.1|	-	4.8e-22	78.3	0.0	8.6e-22	77.5	0.0	1.4	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|384433639|ref|YP_005642997.1|	-	7.9e-05	23.2	0.1	7.9e-05	23.2	0.1	2.3	3	0	0	3	3	3	1	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF2458	PF10454.9	gi|384433639|ref|YP_005642997.1|	-	0.01	15.5	0.2	0.023	14.4	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2458)
PEP-utilisers_N	PF05524.13	gi|384433639|ref|YP_005642997.1|	-	0.015	15.5	0.2	0.96	9.6	0.1	2.3	2	0	0	2	2	2	0	PEP-utilising	enzyme,	N-terminal
Ribosomal_S13	PF00416.22	gi|384433639|ref|YP_005642997.1|	-	0.028	14.8	0.1	0.094	13.1	0.1	1.8	1	0	0	1	1	1	0	Ribosomal	protein	S13/S18
HHH_5	PF14520.6	gi|384433639|ref|YP_005642997.1|	-	0.059	14.0	0.1	0.26	11.9	0.1	2.1	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
PIN_2	PF10130.9	gi|384433639|ref|YP_005642997.1|	-	0.12	12.6	0.7	0.72	10.1	0.3	2.1	2	0	0	2	2	2	0	PIN	domain
NAD_binding_7	PF13241.6	gi|384433640|ref|YP_005642998.1|	-	2.7e-24	85.6	0.0	4.4e-24	84.9	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|384433640|ref|YP_005642998.1|	-	0.00039	20.7	0.5	0.0014	18.9	0.2	2.1	1	1	1	2	2	2	1	TrkA-N	domain
Pyr_redox	PF00070.27	gi|384433640|ref|YP_005642998.1|	-	0.0014	19.1	0.0	0.0033	18.0	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|384433640|ref|YP_005642998.1|	-	0.01	15.2	0.0	0.018	14.3	0.0	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Shikimate_DH	PF01488.20	gi|384433640|ref|YP_005642998.1|	-	0.013	15.6	0.1	0.085	12.9	0.0	2.2	2	1	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|384433640|ref|YP_005642998.1|	-	0.021	14.9	0.1	0.33	11.0	0.0	2.2	2	1	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384433640|ref|YP_005642998.1|	-	0.03	13.6	0.0	0.04	13.2	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|384433640|ref|YP_005642998.1|	-	0.066	12.6	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Sirohm_synth_M	PF14824.6	gi|384433640|ref|YP_005642998.1|	-	0.074	12.5	0.0	0.17	11.4	0.0	1.7	1	0	0	1	1	1	0	Sirohaem	biosynthesis	protein	central
3HCDH_N	PF02737.18	gi|384433640|ref|YP_005642998.1|	-	0.13	12.2	0.0	0.24	11.3	0.0	1.6	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GlutR_N	PF05201.15	gi|384433641|ref|YP_005642999.1|	-	4.3e-35	120.6	0.2	1e-34	119.4	0.0	1.7	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|384433641|ref|YP_005642999.1|	-	4.8e-23	81.8	0.0	1.1e-22	80.6	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|384433641|ref|YP_005642999.1|	-	9.3e-13	48.4	0.3	8.1e-12	45.4	0.1	2.5	1	1	1	2	2	2	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.17	gi|384433641|ref|YP_005642999.1|	-	2.6e-06	27.9	0.0	5.6e-06	26.9	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|384433641|ref|YP_005642999.1|	-	0.0004	20.7	0.0	0.0008	19.7	0.0	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_7	PF13241.6	gi|384433641|ref|YP_005642999.1|	-	0.0019	18.6	0.0	0.0044	17.4	0.0	1.6	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_N	PF02254.18	gi|384433641|ref|YP_005642999.1|	-	0.017	15.4	0.0	0.042	14.1	0.0	1.7	1	0	0	1	1	1	0	TrkA-N	domain
GFO_IDH_MocA	PF01408.22	gi|384433641|ref|YP_005642999.1|	-	0.021	15.7	0.0	0.08	13.8	0.0	2.0	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.19	gi|384433641|ref|YP_005642999.1|	-	0.042	13.2	0.1	0.083	12.2	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.21	gi|384433641|ref|YP_005642999.1|	-	0.068	12.9	0.0	0.24	11.1	0.0	1.9	1	1	1	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
3HCDH_N	PF02737.18	gi|384433641|ref|YP_005642999.1|	-	0.077	12.9	0.1	0.5	10.2	0.0	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|384433641|ref|YP_005642999.1|	-	0.093	12.9	0.1	0.26	11.5	0.0	1.8	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.16	gi|384433641|ref|YP_005642999.1|	-	0.12	12.0	0.0	0.22	11.2	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DUF2115	PF09888.9	gi|384433641|ref|YP_005642999.1|	-	0.14	12.6	5.5	0.052	14.1	1.8	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2115)
ALAD	PF00490.21	gi|384433642|ref|YP_005643000.1|	-	1.5e-138	461.3	0.8	1.7e-138	461.2	0.8	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
PP_kinase_C_1	PF17941.1	gi|384433642|ref|YP_005643000.1|	-	0.073	12.6	0.1	22	4.5	0.0	3.1	3	0	0	3	3	3	0	Polyphosphate	kinase	C-terminal	domain	1
V-ATPase_H_N	PF03224.14	gi|384433642|ref|YP_005643000.1|	-	0.24	10.6	0.0	1.1	8.4	0.0	1.8	2	0	0	2	2	2	0	V-ATPase	subunit	H
Aminotran_3	PF00202.21	gi|384433643|ref|YP_005643001.1|	-	7.1e-68	229.1	0.0	8.9e-68	228.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
NMT	PF01233.19	gi|384433643|ref|YP_005643001.1|	-	0.034	14.0	0.0	0.43	10.4	0.0	2.1	2	0	0	2	2	2	0	Myristoyl-CoA:protein	N-myristoyltransferase,	N-terminal	domain
Porphobil_deam	PF01379.20	gi|384433644|ref|YP_005643002.1|	-	6.9e-59	198.8	0.0	8.6e-59	198.5	0.0	1.1	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|384433644|ref|YP_005643002.1|	-	1.8e-07	31.4	0.0	4e-07	30.3	0.0	1.6	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
HEM4	PF02602.15	gi|384433645|ref|YP_005643003.1|	-	1.1e-23	83.8	0.0	2.3e-23	82.8	0.0	1.5	1	1	1	2	2	2	2	Uroporphyrinogen-III	synthase	HemD
Zn_protease	PF05618.11	gi|384433645|ref|YP_005643003.1|	-	0.076	12.9	0.1	5	7.0	0.0	2.2	2	0	0	2	2	2	0	Putative	ATP-dependant	zinc	protease
CCDC53	PF10152.9	gi|384433645|ref|YP_005643003.1|	-	0.1	13.0	0.5	12	6.2	0.0	2.2	2	0	0	2	2	2	0	Subunit	CCDC53	of	WASH	complex
Phosphodiest	PF01663.22	gi|384433647|ref|YP_005643005.1|	-	2.6e-35	122.7	0.6	2.4e-34	119.5	0.6	2.0	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.12	gi|384433647|ref|YP_005643005.1|	-	0.00059	20.0	0.0	0.12	12.5	0.0	2.5	2	0	0	2	2	2	2	PglZ	domain
Sulfatase	PF00884.23	gi|384433647|ref|YP_005643005.1|	-	0.00082	18.8	0.0	0.014	14.8	0.0	2.2	2	0	0	2	2	2	1	Sulfatase
Fer2_BFD	PF04324.15	gi|384433648|ref|YP_005643006.1|	-	8.5e-08	32.4	0.4	1.8e-07	31.4	0.4	1.5	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
SO_alpha_A3	PF17806.1	gi|384433648|ref|YP_005643006.1|	-	0.00015	22.0	0.0	0.00026	21.2	0.0	1.4	1	0	0	1	1	1	1	Sarcosine	oxidase	A3	domain
Pyr_redox_2	PF07992.14	gi|384433648|ref|YP_005643006.1|	-	0.013	14.7	0.0	0.78	8.9	0.0	2.6	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384433649|ref|YP_005643007.1|	-	2.6e-42	145.7	0.0	3e-42	145.5	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|384433649|ref|YP_005643007.1|	-	7.7e-06	26.0	0.0	0.0023	17.9	0.0	2.2	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|384433649|ref|YP_005643007.1|	-	0.00015	21.0	0.0	0.0039	16.3	0.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.14	gi|384433649|ref|YP_005643007.1|	-	0.00084	18.6	0.0	0.26	10.5	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|384433649|ref|YP_005643007.1|	-	0.001	19.3	0.0	0.0021	18.3	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|384433649|ref|YP_005643007.1|	-	0.0076	15.2	0.2	0.15	10.9	0.1	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
Thi4	PF01946.17	gi|384433649|ref|YP_005643007.1|	-	0.024	13.9	0.0	0.042	13.1	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
Pyr_redox_3	PF13738.6	gi|384433649|ref|YP_005643007.1|	-	0.068	12.4	0.0	0.37	10.0	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384433649|ref|YP_005643007.1|	-	0.11	11.2	0.0	2.3	6.8	0.0	2.1	2	0	0	2	2	2	0	HI0933-like	protein
Pyr_redox	PF00070.27	gi|384433649|ref|YP_005643007.1|	-	0.15	12.6	0.1	1.9	9.1	0.0	2.5	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
RMMBL	PF07521.12	gi|384433650|ref|YP_005643008.1|	-	3.5e-05	23.6	0.0	6.5e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
DRMBL	PF07522.14	gi|384433650|ref|YP_005643008.1|	-	0.016	15.4	0.7	0.029	14.6	0.7	1.3	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
Lactamase_B_2	PF12706.7	gi|384433650|ref|YP_005643008.1|	-	0.019	14.5	0.1	0.041	13.4	0.1	1.6	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
DNA_ligase_A_M	PF01068.21	gi|384433651|ref|YP_005643009.1|	-	6.9e-64	215.3	0.4	1.2e-63	214.5	0.4	1.4	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|384433651|ref|YP_005643009.1|	-	2.7e-40	138.5	0.3	5.2e-40	137.6	0.3	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|384433651|ref|YP_005643009.1|	-	5e-26	91.2	0.0	9.5e-26	90.3	0.0	1.5	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
RNA_ligase	PF09414.10	gi|384433651|ref|YP_005643009.1|	-	5.1e-06	26.9	0.6	1e-05	25.9	0.6	1.4	1	0	0	1	1	1	1	RNA	ligase
DNA_ligase_OB_2	PF14743.6	gi|384433651|ref|YP_005643009.1|	-	0.091	12.8	2.0	1.8	8.6	1.4	2.8	2	1	0	2	2	2	0	DNA	ligase	OB-like	domain
UvrD-helicase	PF00580.21	gi|384433651|ref|YP_005643009.1|	-	0.13	11.8	0.0	0.38	10.2	0.0	1.8	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
dUTPase	PF00692.19	gi|384433652|ref|YP_005643010.1|	-	4.2e-23	81.5	0.0	5.6e-23	81.0	0.0	1.1	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.11	gi|384433652|ref|YP_005643010.1|	-	2e-05	23.5	0.0	0.00036	19.4	0.0	2.3	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
Herpes_UL6	PF01763.16	gi|384433653|ref|YP_005643011.1|	-	0.00069	18.3	1.4	0.00091	17.9	1.4	1.2	1	0	0	1	1	1	1	Herpesvirus	UL6	like
RHH_1	PF01402.21	gi|384433653|ref|YP_005643011.1|	-	0.0056	16.6	1.4	0.01	15.8	0.1	2.1	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
YscO-like	PF16789.5	gi|384433653|ref|YP_005643011.1|	-	0.015	15.3	4.4	0.015	15.3	4.4	1.6	2	0	0	2	2	2	0	YscO-like	protein
Uds1	PF15456.6	gi|384433653|ref|YP_005643011.1|	-	0.059	13.5	1.3	0.17	12.1	1.3	1.8	1	0	0	1	1	1	0	Up-regulated	During	Septation
RHH_4	PF13467.6	gi|384433653|ref|YP_005643011.1|	-	0.092	12.6	0.0	0.67	9.9	0.0	2.3	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
SlyX	PF04102.12	gi|384433653|ref|YP_005643011.1|	-	0.1	13.2	0.6	0.34	11.6	0.6	2.0	1	0	0	1	1	1	0	SlyX
DUF1664	PF07889.12	gi|384433653|ref|YP_005643011.1|	-	0.57	10.2	5.8	0.24	11.4	3.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF4795	PF16043.5	gi|384433653|ref|YP_005643011.1|	-	0.78	9.3	10.5	1.3	8.5	10.5	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
DASH_Spc19	PF08287.11	gi|384433653|ref|YP_005643011.1|	-	1.8	8.4	8.6	0.22	11.4	4.5	1.5	2	0	0	2	2	2	0	Spc19
TMPIT	PF07851.13	gi|384433653|ref|YP_005643011.1|	-	3.2	6.9	9.9	5.6	6.1	9.9	1.4	1	1	0	1	1	1	0	TMPIT-like	protein
XhlA	PF10779.9	gi|384433653|ref|YP_005643011.1|	-	5.4	7.3	8.7	1.3	9.2	3.8	2.6	2	1	0	2	2	2	0	Haemolysin	XhlA
BLOC1_2	PF10046.9	gi|384433653|ref|YP_005643011.1|	-	7.3	7.0	10.6	0.21	11.9	1.3	3.0	3	1	1	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
YtxH	PF12732.7	gi|384433653|ref|YP_005643011.1|	-	7.5	7.2	6.0	7.9	7.1	2.9	2.6	2	1	0	2	2	2	0	YtxH-like	protein
Thioredoxin_3	PF13192.6	gi|384433654|ref|YP_005643012.1|	-	3.2e-31	107.2	1.2	5.2e-15	55.2	1.3	2.4	2	1	0	2	2	2	2	Thioredoxin	domain
Thioredoxin	PF00085.20	gi|384433654|ref|YP_005643012.1|	-	8.3e-06	25.7	0.8	0.046	13.7	0.4	2.3	2	0	0	2	2	2	2	Thioredoxin
OST3_OST6	PF04756.13	gi|384433654|ref|YP_005643012.1|	-	0.00015	21.2	0.0	0.0012	18.3	0.0	1.9	1	1	1	2	2	2	1	OST3	/	OST6	family,	transporter	family
Thioredoxin_2	PF13098.6	gi|384433654|ref|YP_005643012.1|	-	0.0005	20.5	5.0	0.13	12.7	0.3	3.7	2	2	0	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_7	PF13899.6	gi|384433654|ref|YP_005643012.1|	-	0.0013	18.8	0.3	0.0071	16.5	0.1	2.1	2	0	0	2	2	2	1	Thioredoxin-like
Glutaredoxin	PF00462.24	gi|384433654|ref|YP_005643012.1|	-	0.0015	18.7	3.8	5.3	7.3	0.0	3.4	2	2	0	2	2	2	2	Glutaredoxin
ABC_transp_aux	PF09822.9	gi|384433654|ref|YP_005643012.1|	-	0.0055	16.2	0.1	1.4	8.3	0.0	2.1	2	0	0	2	2	2	2	ABC-type	uncharacterized	transport	system
TrbC_Ftype	PF09673.10	gi|384433654|ref|YP_005643012.1|	-	0.044	13.8	0.5	1.6	8.8	0.1	2.5	2	1	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
Thioredoxin_8	PF13905.6	gi|384433654|ref|YP_005643012.1|	-	0.06	13.7	0.8	10	6.5	0.4	3.2	2	1	0	2	2	2	0	Thioredoxin-like
HCV_core	PF01542.18	gi|384433654|ref|YP_005643012.1|	-	0.12	12.7	0.0	0.44	11.0	0.0	1.8	2	0	0	2	2	2	0	Hepatitis	C	virus	core	protein
zf-ribbon_3	PF13248.6	gi|384433654|ref|YP_005643012.1|	-	9.4	5.8	7.3	2.8	7.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
AMMECR1	PF01871.17	gi|384433655|ref|YP_005643013.1|	-	1.8e-44	151.3	0.0	2.3e-44	151.0	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
SARA	PF11409.8	gi|384433655|ref|YP_005643013.1|	-	0.14	12.4	0.2	11	6.3	0.1	2.3	2	0	0	2	2	2	0	Smad	anchor	for	receptor	activation	(SARA)
Mut7-C	PF01927.16	gi|384433656|ref|YP_005643014.1|	-	6.2e-33	113.9	3.2	2e-25	89.6	0.0	2.2	1	1	1	2	2	2	2	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|384433656|ref|YP_005643014.1|	-	9.2e-06	25.3	0.0	1.5e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
zf-ribbon_3	PF13248.6	gi|384433656|ref|YP_005643014.1|	-	0.0048	16.3	2.7	0.013	14.9	2.7	1.7	1	1	0	1	1	1	1	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433656|ref|YP_005643014.1|	-	0.0059	16.5	0.8	0.014	15.4	0.8	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_ribbon_SprT	PF17283.2	gi|384433656|ref|YP_005643014.1|	-	0.013	15.4	0.4	1.6	8.7	0.0	2.4	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|384433656|ref|YP_005643014.1|	-	0.018	15.0	4.8	0.048	13.6	4.8	1.6	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Rep_fac-A_C	PF08646.10	gi|384433656|ref|YP_005643014.1|	-	0.025	14.3	0.4	0.036	13.8	0.4	1.3	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
DZR	PF12773.7	gi|384433656|ref|YP_005643014.1|	-	0.027	14.5	0.4	0.048	13.7	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
DHC_N2	PF08393.13	gi|384433656|ref|YP_005643014.1|	-	0.027	13.6	0.1	0.031	13.4	0.1	1.3	1	1	0	1	1	1	0	Dynein	heavy	chain,	N-terminal	region	2
IBR	PF01485.21	gi|384433656|ref|YP_005643014.1|	-	0.039	14.2	0.5	0.067	13.4	0.5	1.3	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
zf_UBZ	PF18439.1	gi|384433656|ref|YP_005643014.1|	-	0.05	13.2	1.1	2.8	7.6	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
C1_1	PF00130.22	gi|384433656|ref|YP_005643014.1|	-	0.08	12.8	1.1	0.14	12.1	1.1	1.3	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HypA	PF01155.19	gi|384433656|ref|YP_005643014.1|	-	0.095	12.7	0.1	0.14	12.2	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Auto_anti-p27	PF06677.12	gi|384433656|ref|YP_005643014.1|	-	0.13	12.5	1.1	0.24	11.6	1.1	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Humanin	PF15040.6	gi|384433656|ref|YP_005643014.1|	-	0.15	11.5	0.6	19	4.8	0.1	3.1	3	0	0	3	3	3	0	Humanin	family
zf-UDP	PF14569.6	gi|384433656|ref|YP_005643014.1|	-	0.16	12.1	0.9	7.9	6.7	0.0	2.1	1	1	1	2	2	2	0	Zinc-binding	RING-finger
zf-ACC	PF17848.1	gi|384433656|ref|YP_005643014.1|	-	0.25	11.4	5.6	20	5.3	5.1	3.5	3	1	1	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
zinc_ribbon_4	PF13717.6	gi|384433656|ref|YP_005643014.1|	-	0.65	10.0	3.9	17	5.4	0.3	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384433656|ref|YP_005643014.1|	-	0.81	9.9	3.3	4.5	7.5	0.2	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-RING_4	PF14570.6	gi|384433656|ref|YP_005643014.1|	-	2.7	7.8	6.8	60	3.5	6.9	2.2	1	1	1	2	2	2	0	RING/Ubox	like	zinc-binding	domain
Rubredoxin_2	PF18073.1	gi|384433656|ref|YP_005643014.1|	-	5.9	6.7	7.5	10	5.9	0.2	2.6	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
DUF543	PF04418.12	gi|384433657|ref|YP_005643015.1|	-	0.022	14.7	0.3	0.022	14.7	0.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF543)
DUF2232	PF09991.9	gi|384433657|ref|YP_005643015.1|	-	0.064	12.4	8.8	0.078	12.2	8.8	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
Peptidase_U4	PF03419.13	gi|384433657|ref|YP_005643015.1|	-	0.18	11.1	5.8	0.21	10.9	5.8	1.0	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
FbpA	PF05833.11	gi|384433658|ref|YP_005643016.1|	-	2.1e-27	96.0	26.6	6.6e-27	94.4	26.6	1.7	1	1	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|384433658|ref|YP_005643016.1|	-	7.5e-25	87.7	0.0	1.7e-24	86.6	0.0	1.6	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|384433658|ref|YP_005643016.1|	-	1.5e-05	25.2	0.3	5.9e-05	23.2	0.1	2.2	1	1	0	1	1	1	1	NFACT	protein	RNA	binding	domain
FtsQ	PF03799.15	gi|384433658|ref|YP_005643016.1|	-	0.0021	18.9	3.2	1	10.2	1.1	3.3	2	1	1	3	3	3	1	Cell	division	protein	FtsQ
MnmE_helical	PF12631.7	gi|384433658|ref|YP_005643016.1|	-	0.022	14.9	7.2	0.049	13.8	7.2	1.6	1	0	0	1	1	1	0	MnmE	helical	domain
DUF349	PF03993.12	gi|384433658|ref|YP_005643016.1|	-	0.037	14.3	1.5	0.037	14.3	1.5	2.5	2	0	0	2	2	1	0	Domain	of	Unknown	Function	(DUF349)
DUF2935	PF11155.8	gi|384433658|ref|YP_005643016.1|	-	0.063	13.6	1.2	1.5	9.1	0.2	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
MIP-T3_C	PF17749.1	gi|384433658|ref|YP_005643016.1|	-	0.33	10.9	15.0	0.074	13.0	2.5	2.9	3	0	0	3	3	3	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
DUF3527	PF12043.8	gi|384433658|ref|YP_005643016.1|	-	0.51	9.8	4.5	0.8	9.2	4.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3527)
DUF4298	PF14131.6	gi|384433658|ref|YP_005643016.1|	-	1.1	9.2	12.4	0.4	10.7	1.2	3.5	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4298)
Seryl_tRNA_N	PF02403.22	gi|384433658|ref|YP_005643016.1|	-	3.2	8.0	19.4	0.94	9.7	3.7	3.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
AUX_IAA	PF02309.16	gi|384433658|ref|YP_005643016.1|	-	5.2	6.8	7.0	0.47	10.3	1.3	2.0	2	1	0	2	2	2	0	AUX/IAA	family
RIO1	PF01163.22	gi|384433659|ref|YP_005643017.1|	-	3.8e-46	157.1	0.0	5.4e-46	156.6	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|384433659|ref|YP_005643017.1|	-	1.8e-07	31.4	0.0	0.00025	21.0	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Rio2_N	PF09202.11	gi|384433659|ref|YP_005643017.1|	-	1.2e-06	28.6	0.7	4.5e-06	26.8	0.1	2.1	1	1	1	2	2	2	1	Rio2,	N-terminal
Pkinase	PF00069.25	gi|384433659|ref|YP_005643017.1|	-	2.7e-06	27.0	0.1	5.7e-06	25.9	0.1	1.5	1	1	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|384433659|ref|YP_005643017.1|	-	0.00024	20.5	0.1	0.27	10.6	0.0	2.2	2	0	0	2	2	2	2	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Choline_kinase	PF01633.20	gi|384433659|ref|YP_005643017.1|	-	0.003	17.2	0.1	0.87	9.1	0.1	2.3	1	1	1	2	2	2	2	Choline/ethanolamine	kinase
DUF460	PF04312.13	gi|384433660|ref|YP_005643018.1|	-	1.2e-50	170.8	1.0	3.5e-50	169.4	1.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
DUF2229	PF09989.9	gi|384433660|ref|YP_005643018.1|	-	0.082	12.5	2.0	0.27	10.8	0.1	2.4	2	0	0	2	2	2	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
DUF4407	PF14362.6	gi|384433660|ref|YP_005643018.1|	-	0.47	9.8	6.0	2.7	7.3	1.9	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
SlyX	PF04102.12	gi|384433660|ref|YP_005643018.1|	-	0.81	10.4	4.1	1.6	9.4	0.2	2.9	2	0	0	2	2	2	0	SlyX
HAUS-augmin3	PF14932.6	gi|384433660|ref|YP_005643018.1|	-	6	6.4	10.2	1.5	8.3	6.7	1.7	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	3
TMPIT	PF07851.13	gi|384433660|ref|YP_005643018.1|	-	8	5.6	11.4	17	4.5	0.3	2.3	2	0	0	2	2	2	0	TMPIT-like	protein
AdoMet_Synthase	PF01941.19	gi|384433661|ref|YP_005643019.1|	-	5.4e-171	568.7	3.6	6.1e-171	568.6	3.6	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
LSM	PF01423.22	gi|384433662|ref|YP_005643020.1|	-	4.9e-21	74.2	0.2	5.8e-21	74.0	0.2	1.1	1	0	0	1	1	1	1	LSM	domain
DUF1125	PF06563.11	gi|384433662|ref|YP_005643020.1|	-	0.087	12.7	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1125)
HTH_5	PF01022.20	gi|384433663|ref|YP_005643021.1|	-	2.4e-13	49.7	0.8	3.9e-12	45.8	0.5	2.1	1	1	1	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384433663|ref|YP_005643021.1|	-	1.1e-09	38.3	0.0	1.4e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|384433663|ref|YP_005643021.1|	-	1.3e-06	27.8	0.6	2.5e-06	26.9	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|384433663|ref|YP_005643021.1|	-	5.1e-06	26.3	0.3	9.1e-06	25.5	0.3	1.5	1	1	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|384433663|ref|YP_005643021.1|	-	6.9e-06	25.9	0.0	9.3e-06	25.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|384433663|ref|YP_005643021.1|	-	7.9e-06	25.7	0.2	3.7e-05	23.5	0.1	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.6	gi|384433663|ref|YP_005643021.1|	-	1.9e-05	24.8	0.2	3.2e-05	24.0	0.1	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|384433663|ref|YP_005643021.1|	-	7.5e-05	22.6	0.4	0.00014	21.7	0.2	1.6	1	1	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|384433663|ref|YP_005643021.1|	-	0.0001	22.7	0.1	0.00026	21.4	0.0	1.7	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DprA_WH	PF17782.1	gi|384433663|ref|YP_005643021.1|	-	0.00041	20.4	0.0	0.00057	20.0	0.0	1.1	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|384433663|ref|YP_005643021.1|	-	0.00053	19.7	0.0	0.00096	18.9	0.0	1.4	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|384433663|ref|YP_005643021.1|	-	0.00077	19.4	0.1	0.0017	18.3	0.0	1.6	1	1	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
UPF0122	PF04297.14	gi|384433663|ref|YP_005643021.1|	-	0.002	18.3	0.2	0.0024	18.1	0.2	1.2	1	1	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_36	PF13730.6	gi|384433663|ref|YP_005643021.1|	-	0.0032	17.4	0.1	0.0057	16.6	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|384433663|ref|YP_005643021.1|	-	0.006	16.1	0.0	0.011	15.3	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
Fe_dep_repress	PF01325.19	gi|384433663|ref|YP_005643021.1|	-	0.013	15.7	0.3	0.031	14.5	0.3	1.7	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|384433663|ref|YP_005643021.1|	-	0.017	15.4	0.2	0.024	15.0	0.2	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
DUF2250	PF10007.9	gi|384433663|ref|YP_005643021.1|	-	0.023	14.8	0.3	0.034	14.3	0.3	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_41	PF14502.6	gi|384433663|ref|YP_005643021.1|	-	0.031	13.9	0.1	0.072	12.8	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|384433663|ref|YP_005643021.1|	-	0.04	13.9	0.0	0.051	13.6	0.0	1.1	1	0	0	1	1	1	0	Dimerisation	domain
GntR	PF00392.21	gi|384433663|ref|YP_005643021.1|	-	0.043	13.5	0.0	0.077	12.7	0.0	1.5	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|384433663|ref|YP_005643021.1|	-	0.063	13.3	0.2	0.14	12.2	0.1	1.8	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|384433663|ref|YP_005643021.1|	-	0.073	13.5	0.6	0.13	12.7	0.4	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|384433663|ref|YP_005643021.1|	-	0.17	11.9	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
CTP_synth_N	PF06418.14	gi|384433664|ref|YP_005643022.1|	-	3.5e-121	403.5	4.3	5.1e-121	403.0	4.3	1.3	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|384433664|ref|YP_005643022.1|	-	8.3e-53	179.0	0.0	1.4e-52	178.2	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|384433664|ref|YP_005643022.1|	-	2.9e-09	37.0	0.0	1.8e-08	34.4	0.0	2.2	1	1	1	2	2	2	1	Peptidase	C26
CbiA	PF01656.23	gi|384433664|ref|YP_005643022.1|	-	1.4e-05	25.1	0.0	2.6e-05	24.3	0.0	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MeaB	PF03308.16	gi|384433664|ref|YP_005643022.1|	-	0.0033	16.4	0.2	0.0056	15.7	0.2	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF5603	PF18231.1	gi|384433664|ref|YP_005643022.1|	-	0.0093	16.3	0.1	0.058	13.7	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5603)
OMPdecase	PF00215.24	gi|384433665|ref|YP_005643023.1|	-	7.1e-20	71.6	1.8	8.9e-20	71.2	1.8	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NanE	PF04131.14	gi|384433665|ref|YP_005643023.1|	-	0.00027	20.2	0.3	0.00046	19.4	0.2	1.5	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
QRPTase_C	PF01729.19	gi|384433665|ref|YP_005643023.1|	-	0.0042	16.9	1.3	0.0066	16.2	0.3	1.9	2	1	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
PEP_hydrolase	PF09370.10	gi|384433665|ref|YP_005643023.1|	-	0.017	14.4	0.0	0.025	13.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	hydrolase-like
4HFCP_synth	PF04476.13	gi|384433665|ref|YP_005643023.1|	-	0.033	13.9	0.1	0.12	12.1	0.1	2.1	1	1	0	1	1	1	0	4-HFC-P	synthase
DUF1411	PF07199.11	gi|384433666|ref|YP_005643024.1|	-	8e-05	22.4	2.3	9.4e-05	22.2	2.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1411)
DUF2153	PF09921.9	gi|384433667|ref|YP_005643025.1|	-	1.2e-55	186.5	9.6	1.5e-55	186.3	9.6	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
DUF4248	PF14053.6	gi|384433667|ref|YP_005643025.1|	-	0.04	13.9	1.3	0.94	9.6	0.1	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4248)
Arc_PepC_II	PF06847.11	gi|384433667|ref|YP_005643025.1|	-	0.044	14.3	0.6	0.16	12.5	0.1	1.9	1	1	1	2	2	2	0	Archaeal	Peptidase	A24	C-terminus	Type	II
DUF932	PF06067.11	gi|384433667|ref|YP_005643025.1|	-	0.091	12.5	0.1	0.11	12.3	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF932)
VPR	PF00522.18	gi|384433667|ref|YP_005643025.1|	-	0.11	12.5	0.5	0.3	11.1	0.3	2.0	1	1	0	1	1	1	0	VPR/VPX	protein
DUF1912	PF08930.10	gi|384433667|ref|YP_005643025.1|	-	0.2	11.8	1.2	13	6.0	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1912)
Trm112p	PF03966.16	gi|384433668|ref|YP_005643026.1|	-	5.2e-18	65.4	3.2	7e-18	65.0	3.2	1.2	1	0	0	1	1	1	1	Trm112p-like	protein
PHD	PF00628.29	gi|384433668|ref|YP_005643026.1|	-	0.017	15.0	4.0	0.031	14.2	1.0	2.3	2	0	0	2	2	2	0	PHD-finger
Pico_P2A	PF00947.19	gi|384433668|ref|YP_005643026.1|	-	0.14	12.2	0.1	0.19	11.8	0.1	1.3	1	0	0	1	1	1	0	Picornavirus	core	protein	2A
zf-RING_7	PF02591.15	gi|384433668|ref|YP_005643026.1|	-	0.33	11.2	4.4	20	5.4	4.4	2.7	1	1	0	1	1	1	0	C4-type	zinc	ribbon	domain
PGM_PMM_I	PF02878.16	gi|384433669|ref|YP_005643027.1|	-	2.4e-45	153.6	0.0	4.4e-45	152.8	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|384433669|ref|YP_005643027.1|	-	5.1e-23	81.6	0.0	1.1e-22	80.5	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|384433669|ref|YP_005643027.1|	-	2e-17	63.4	0.0	4.2e-17	62.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|384433669|ref|YP_005643027.1|	-	4.5e-10	39.6	0.1	1.4e-09	38.0	0.1	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Propep_M14	PF02244.16	gi|384433669|ref|YP_005643027.1|	-	0.014	15.8	0.0	0.45	10.9	0.0	2.4	2	0	0	2	2	2	0	Carboxypeptidase	activation	peptide
DFP	PF04127.15	gi|384433670|ref|YP_005643028.1|	-	2.1e-55	187.4	0.2	3.2e-53	180.3	0.0	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|384433670|ref|YP_005643028.1|	-	2.8e-37	127.9	2.8	3.1e-37	127.8	1.0	1.8	2	0	0	2	2	2	1	Flavoprotein
Radical_SAM	PF04055.21	gi|384433670|ref|YP_005643028.1|	-	0.055	13.9	0.3	0.16	12.4	0.3	1.7	1	0	0	1	1	1	0	Radical	SAM	superfamily
Acetyltransf_1	PF00583.25	gi|384433671|ref|YP_005643029.1|	-	4.7e-18	65.5	0.0	5.9e-18	65.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|384433671|ref|YP_005643029.1|	-	3.4e-12	46.6	0.0	5.2e-12	46.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|384433671|ref|YP_005643029.1|	-	1.3e-11	44.6	0.1	2.7e-11	43.5	0.1	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|384433671|ref|YP_005643029.1|	-	3.1e-08	33.5	0.1	5.2e-08	32.7	0.1	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_15	PF17013.5	gi|384433671|ref|YP_005643029.1|	-	2.2e-06	27.3	0.5	4e-06	26.4	0.4	1.4	1	1	0	1	1	1	1	Putative	acetyl-transferase
Acetyltransf_8	PF13523.6	gi|384433671|ref|YP_005643029.1|	-	4.5e-06	26.4	0.0	7e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|384433671|ref|YP_005643029.1|	-	1e-05	25.6	0.1	4.9e-05	23.4	0.1	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|384433671|ref|YP_005643029.1|	-	0.00014	22.5	0.0	0.00023	21.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|384433671|ref|YP_005643029.1|	-	0.00031	20.9	1.1	0.00071	19.7	1.1	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|384433671|ref|YP_005643029.1|	-	0.0039	17.1	0.0	0.0089	16.0	0.0	1.5	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
GNAT_acetyltran	PF12746.7	gi|384433671|ref|YP_005643029.1|	-	0.011	15.3	0.0	0.018	14.7	0.0	1.3	1	0	0	1	1	1	0	GNAT	acetyltransferase
Acetyltransf_CG	PF14542.6	gi|384433671|ref|YP_005643029.1|	-	0.083	13.0	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Metallophos_3	PF14582.6	gi|384433672|ref|YP_005643030.1|	-	6.9e-10	38.7	0.2	5.6e-07	29.1	0.0	2.0	1	1	1	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
CitG	PF01874.16	gi|384433673|ref|YP_005643031.1|	-	2.1e-39	135.9	0.0	2.4e-39	135.7	0.0	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
NTP_transf_2	PF01909.23	gi|384433674|ref|YP_005643032.1|	-	4.9e-07	29.9	0.1	1e-06	28.9	0.1	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384433674|ref|YP_005643032.1|	-	0.00017	21.6	0.3	0.00078	19.5	0.3	2.1	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
DUF1464	PF07318.12	gi|384433675|ref|YP_005643033.1|	-	6.5e-101	337.8	0.1	1.8e-100	336.3	0.1	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1464)
Ribosomal_S10	PF00338.22	gi|384433676|ref|YP_005643034.1|	-	1.2e-25	89.6	0.0	1.3e-25	89.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|384433677|ref|YP_005643035.1|	-	2.6e-54	183.7	0.0	3.3e-54	183.4	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|384433677|ref|YP_005643035.1|	-	2.9e-38	130.6	0.0	7.4e-38	129.3	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|384433677|ref|YP_005643035.1|	-	4.9e-19	68.5	5.2	3.6e-18	65.7	2.9	2.7	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|384433677|ref|YP_005643035.1|	-	1.4e-05	25.1	0.1	6.4e-05	23.0	0.1	2.1	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU_D4	PF14578.6	gi|384433677|ref|YP_005643035.1|	-	2.7e-05	24.0	3.7	5.3e-05	23.1	2.6	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
SRPRB	PF09439.10	gi|384433677|ref|YP_005643035.1|	-	0.0035	16.8	0.1	1.4	8.3	0.0	2.3	1	1	1	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.18	gi|384433677|ref|YP_005643035.1|	-	0.013	14.8	0.1	0.058	12.7	0.1	2.0	1	1	0	1	1	1	0	Septin
Dynamin_N	PF00350.23	gi|384433677|ref|YP_005643035.1|	-	0.05	13.7	0.0	7.7	6.5	0.0	2.4	1	1	1	2	2	2	0	Dynamin	family
HSR	PF03172.13	gi|384433677|ref|YP_005643035.1|	-	0.054	13.6	0.0	0.1	12.8	0.0	1.4	1	0	0	1	1	1	0	HSR	domain
Ribosomal_S7	PF00177.21	gi|384433678|ref|YP_005643036.1|	-	2.1e-44	150.8	0.4	2.6e-44	150.5	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
DNase-RNase	PF02577.14	gi|384433679|ref|YP_005643037.1|	-	1.8e-06	27.6	0.1	2.5e-06	27.2	0.1	1.2	1	0	0	1	1	1	1	Bifunctional	nuclease
Ribosom_S12_S23	PF00164.25	gi|384433680|ref|YP_005643038.1|	-	2.4e-47	159.2	0.3	3.3e-47	158.8	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
KH_2	PF07650.17	gi|384433681|ref|YP_005643039.1|	-	6.6e-20	70.7	4.4	9.7e-15	54.2	1.0	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|384433681|ref|YP_005643039.1|	-	3.6e-14	52.6	3.7	1.9e-13	50.3	1.8	2.2	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.6	gi|384433681|ref|YP_005643039.1|	-	2.1e-11	43.5	0.9	4.1e-06	26.6	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|384433681|ref|YP_005643039.1|	-	0.0012	18.6	0.8	0.3	10.9	0.2	2.5	2	0	0	2	2	2	2	KH	domain
DUF4859	PF16151.5	gi|384433681|ref|YP_005643039.1|	-	0.14	12.1	0.0	0.81	9.6	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4859)
Ribosomal_L7Ae	PF01248.26	gi|384433682|ref|YP_005643040.1|	-	1.2e-17	63.4	0.0	1.4e-17	63.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
RNA_pol_Rpb1_5	PF04998.17	gi|384433683|ref|YP_005643041.1|	-	4e-59	200.2	3.3	6.6e-59	199.5	3.3	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
Baculo_FP	PF03258.14	gi|384433683|ref|YP_005643041.1|	-	0.016	15.4	1.7	0.05	13.8	0.1	2.4	2	1	0	2	2	2	0	Baculovirus	FP	protein
RNA_pol_Rpb1_1	PF04997.12	gi|384433684|ref|YP_005643042.1|	-	1.5e-101	339.9	0.0	2e-101	339.4	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|384433684|ref|YP_005643042.1|	-	1.5e-74	249.7	0.0	3.5e-74	248.5	0.0	1.6	2	0	0	2	2	2	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.18	gi|384433684|ref|YP_005643042.1|	-	6.1e-38	130.2	0.0	1e-37	129.5	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.17	gi|384433684|ref|YP_005643042.1|	-	3.4e-33	113.8	0.0	7.2e-33	112.8	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.17	gi|384433684|ref|YP_005643042.1|	-	3.5e-24	85.7	0.1	7.5e-24	84.6	0.1	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
zf-FPG_IleRS	PF06827.14	gi|384433684|ref|YP_005643042.1|	-	0.13	12.2	7.8	0.85	9.5	0.3	3.4	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
DZR	PF12773.7	gi|384433684|ref|YP_005643042.1|	-	0.14	12.2	1.6	3.7	7.7	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|384433684|ref|YP_005643042.1|	-	6.1	6.9	8.7	2.6	8.1	0.1	3.1	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
RNA_pol_Rpb2_6	PF00562.28	gi|384433685|ref|YP_005643043.1|	-	3.9e-128	427.8	0.1	5.6e-128	427.3	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.15	gi|384433685|ref|YP_005643043.1|	-	7.3e-56	188.9	0.0	1.1e-55	188.4	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|384433685|ref|YP_005643043.1|	-	5.6e-41	140.3	0.0	9.3e-41	139.6	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_7	PF04560.20	gi|384433685|ref|YP_005643043.1|	-	2.7e-30	104.6	0.0	5.1e-30	103.7	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_3	PF04565.16	gi|384433685|ref|YP_005643043.1|	-	2.5e-25	88.5	0.0	5.5e-25	87.3	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_4	PF04566.13	gi|384433685|ref|YP_005643043.1|	-	1.3e-19	70.3	2.3	5.1e-19	68.3	2.3	2.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|384433685|ref|YP_005643043.1|	-	7.2e-11	42.5	0.0	2.1e-10	41.0	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb2_45	PF10385.9	gi|384433685|ref|YP_005643043.1|	-	0.18	12.1	0.1	0.88	9.9	0.0	2.2	2	0	0	2	2	2	0	RNA	polymerase	beta	subunit	external	1	domain
RNA_pol_Rpb5_C	PF01191.19	gi|384433686|ref|YP_005643044.1|	-	4.3e-28	97.0	0.2	4.8e-28	96.8	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
Peptidase_C13	PF01650.18	gi|384433686|ref|YP_005643044.1|	-	0.2	11.2	0.0	0.22	11.0	0.0	1.0	1	0	0	1	1	1	0	Peptidase	C13	family
GTP_EFTU_D4	PF14578.6	gi|384433687|ref|YP_005643045.1|	-	2e-38	130.1	3.0	7.7e-38	128.3	3.0	2.1	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
GTP_EFTU	PF00009.27	gi|384433687|ref|YP_005643045.1|	-	2.3e-30	105.6	0.0	9.6e-30	103.6	0.0	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.8	gi|384433687|ref|YP_005643045.1|	-	4.7e-15	55.6	3.9	1.7e-14	53.8	1.6	2.6	2	0	0	2	2	2	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|384433687|ref|YP_005643045.1|	-	1.6e-11	44.4	0.9	8.6e-11	42.1	0.1	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|384433687|ref|YP_005643045.1|	-	4.4e-07	30.0	0.6	3.1e-06	27.2	0.0	2.6	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
Roc	PF08477.13	gi|384433687|ref|YP_005643045.1|	-	6.2e-05	23.2	0.0	0.00013	22.2	0.0	1.5	1	0	0	1	1	1	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Ras	PF00071.22	gi|384433687|ref|YP_005643045.1|	-	0.0026	17.4	0.0	0.013	15.1	0.0	2.3	1	1	0	1	1	1	1	Ras	family
Arf	PF00025.21	gi|384433687|ref|YP_005643045.1|	-	0.0063	16.0	0.2	5.3	6.5	0.0	3.0	2	1	0	2	2	2	2	ADP-ribosylation	factor	family
Peripla_BP_4	PF13407.6	gi|384433687|ref|YP_005643045.1|	-	0.0088	15.6	0.1	0.028	14.0	0.0	1.7	2	0	0	2	2	2	1	Periplasmic	binding	protein	domain
Dynamin_N	PF00350.23	gi|384433687|ref|YP_005643045.1|	-	0.0094	16.0	0.1	0.1	12.6	0.0	2.5	2	0	0	2	2	2	1	Dynamin	family
RsgA_GTPase	PF03193.16	gi|384433687|ref|YP_005643045.1|	-	0.036	14.0	0.6	4.4	7.2	0.0	3.4	2	1	1	3	3	3	0	RsgA	GTPase
Ribo_biogen_C	PF04034.13	gi|384433687|ref|YP_005643045.1|	-	0.16	11.7	0.0	0.37	10.5	0.0	1.6	1	0	0	1	1	1	0	Ribosome	biogenesis	protein,	C-terminal
SRPRB	PF09439.10	gi|384433687|ref|YP_005643045.1|	-	5.4	6.4	7.9	1.6	8.1	0.3	3.3	3	1	0	3	3	3	0	Signal	recognition	particle	receptor	beta	subunit
NDK	PF00334.19	gi|384433688|ref|YP_005643046.1|	-	8.1e-59	197.5	0.0	9e-59	197.3	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
Ribosomal_L24e	PF01246.20	gi|384433689|ref|YP_005643047.1|	-	6.9e-22	77.5	2.4	7.4e-22	77.4	2.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|384433689|ref|YP_005643047.1|	-	1.1e-06	28.5	1.2	1.7e-06	27.8	1.2	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-MYND	PF01753.18	gi|384433689|ref|YP_005643047.1|	-	0.00047	20.2	0.0	0.00073	19.6	0.0	1.4	1	1	0	1	1	1	1	MYND	finger
zf-FLZ	PF04570.14	gi|384433689|ref|YP_005643047.1|	-	0.0013	18.2	0.5	0.0024	17.3	0.5	1.4	1	1	0	1	1	1	1	zinc-finger	of	the	FCS-type,	C2-C2
YHS	PF04945.13	gi|384433689|ref|YP_005643047.1|	-	0.0025	17.9	0.1	0.0045	17.1	0.1	1.4	1	1	0	1	1	1	1	YHS	domain
DUF2116	PF09889.9	gi|384433689|ref|YP_005643047.1|	-	0.034	14.1	2.3	1.8	8.6	0.3	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
NosL	PF05573.12	gi|384433689|ref|YP_005643047.1|	-	0.13	12.6	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	NosL
VATC	PF18716.1	gi|384433689|ref|YP_005643047.1|	-	0.48	10.3	5.5	4.2	7.3	5.5	2.1	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
Ribosomal_S28e	PF01200.18	gi|384433690|ref|YP_005643048.1|	-	1.2e-31	108.5	3.1	1.4e-31	108.2	3.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S28e
UPRTase	PF14681.6	gi|384433691|ref|YP_005643049.1|	-	2.2e-49	167.8	0.0	2.5e-49	167.6	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|384433691|ref|YP_005643049.1|	-	5.6e-09	35.7	0.5	9.2e-09	35.0	0.5	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|384433691|ref|YP_005643049.1|	-	0.095	12.2	0.0	0.18	11.3	0.0	1.6	1	1	0	1	1	1	0	Phosphoribosyl	transferase
GatB_N	PF02934.15	gi|384433692|ref|YP_005643050.1|	-	8.5e-94	314.0	0.0	1.2e-93	313.5	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|384433692|ref|YP_005643050.1|	-	4.8e-42	143.3	6.3	8.4e-42	142.5	6.3	1.4	1	0	0	1	1	1	1	GatB	domain
Pribosyltran	PF00156.27	gi|384433693|ref|YP_005643051.1|	-	2.9e-15	56.1	0.2	5.3e-15	55.3	0.2	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|384433693|ref|YP_005643051.1|	-	0.013	15.0	0.0	0.015	14.8	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
HTH_3	PF01381.22	gi|384433693|ref|YP_005643051.1|	-	0.056	13.5	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
Lycopene_cycl	PF05834.12	gi|384433693|ref|YP_005643051.1|	-	0.2	10.7	0.1	0.34	9.9	0.1	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Kelch_3	PF13415.6	gi|384433694|ref|YP_005643052.1|	-	0.023	15.0	0.3	0.055	13.8	0.3	1.6	1	0	0	1	1	1	0	Galactose	oxidase,	central	domain
Kelch_6	PF13964.6	gi|384433694|ref|YP_005643052.1|	-	0.069	13.5	0.0	1.6	9.2	0.0	2.7	3	0	0	3	3	3	0	Kelch	motif
Lactamase_B	PF00753.27	gi|384433694|ref|YP_005643052.1|	-	0.17	11.9	0.1	0.23	11.4	0.1	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Radical_SAM	PF04055.21	gi|384433696|ref|YP_005643054.1|	-	2.6e-21	76.7	0.0	2.6e-21	76.7	0.0	2.1	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|384433696|ref|YP_005643054.1|	-	1.8e-07	31.3	0.0	1.8e-07	31.3	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|384433696|ref|YP_005643054.1|	-	2.8e-07	30.9	0.0	6.9e-07	29.6	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
HMGL-like	PF00682.19	gi|384433696|ref|YP_005643054.1|	-	0.081	12.5	0.0	0.38	10.3	0.0	1.9	1	1	0	1	1	1	0	HMGL-like
AIRS	PF00586.24	gi|384433697|ref|YP_005643055.1|	-	2.6e-10	40.8	0.0	4.9e-10	39.9	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Lyase_1	PF00206.20	gi|384433698|ref|YP_005643056.1|	-	3.8e-43	148.1	0.0	6.3e-43	147.3	0.0	1.3	1	0	0	1	1	1	1	Lyase
ADSL_C	PF10397.9	gi|384433698|ref|YP_005643056.1|	-	1.7e-16	60.5	0.0	5.9e-16	58.8	0.0	2.0	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminus
ASL_C	PF08328.11	gi|384433698|ref|YP_005643056.1|	-	1.7e-06	28.1	0.6	1.7e-06	28.1	0.6	2.0	2	0	0	2	2	2	1	Adenylosuccinate	lyase	C-terminal
FumaraseC_C	PF10415.9	gi|384433698|ref|YP_005643056.1|	-	0.0054	17.1	0.1	0.077	13.4	0.0	2.8	3	0	0	3	3	3	1	Fumarase	C	C-terminus
COX3	PF00510.18	gi|384433698|ref|YP_005643056.1|	-	0.06	13.2	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	III
ASL_C2	PF14698.6	gi|384433698|ref|YP_005643056.1|	-	0.12	13.1	0.1	0.77	10.6	0.0	2.4	2	1	0	2	2	2	0	Argininosuccinate	lyase	C-terminal
DUF1297	PF06973.12	gi|384433699|ref|YP_005643057.1|	-	4.7e-77	257.8	0.1	6.1e-77	257.4	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|384433699|ref|YP_005643057.1|	-	6e-41	139.3	0.1	9.9e-41	138.5	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
GARS_A	PF01071.19	gi|384433699|ref|YP_005643057.1|	-	0.004	17.0	0.0	0.0082	15.9	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_3	PF02655.14	gi|384433699|ref|YP_005643057.1|	-	0.011	15.8	0.2	0.023	14.8	0.2	1.7	1	1	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|384433699|ref|YP_005643057.1|	-	0.039	13.4	0.0	0.065	12.7	0.0	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
DUF3217	PF11506.8	gi|384433699|ref|YP_005643057.1|	-	0.047	13.6	0.2	0.09	12.7	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3217)
ATP-grasp	PF02222.22	gi|384433699|ref|YP_005643057.1|	-	0.067	12.8	0.6	0.8	9.3	0.1	2.1	2	0	0	2	2	2	0	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|384433699|ref|YP_005643057.1|	-	0.077	12.4	0.1	0.12	11.7	0.1	1.3	1	0	0	1	1	1	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
DUF1297	PF06973.12	gi|384433700|ref|YP_005643058.1|	-	8.2e-80	266.8	0.0	1.1e-79	266.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.12	gi|384433700|ref|YP_005643058.1|	-	1.2e-46	157.7	0.0	1.8e-46	157.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
Adenylsucc_synt	PF00709.21	gi|384433701|ref|YP_005643059.1|	-	9.4e-68	229.0	0.1	6.8e-38	130.7	0.0	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
Pyr_redox_2	PF07992.14	gi|384433702|ref|YP_005643060.1|	-	4.7e-13	49.0	0.2	6.3e-06	25.6	0.0	3.1	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384433702|ref|YP_005643060.1|	-	9.8e-10	38.5	0.1	1.2e-05	25.1	0.0	2.9	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|384433702|ref|YP_005643060.1|	-	3.9e-09	36.1	0.1	4.6e-05	22.7	0.0	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|384433702|ref|YP_005643060.1|	-	4.6e-08	32.2	0.0	0.00022	20.0	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|384433702|ref|YP_005643060.1|	-	5e-08	32.5	1.2	0.0028	17.0	0.0	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|384433702|ref|YP_005643060.1|	-	1.3e-05	25.3	0.1	0.00017	21.8	0.1	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|384433702|ref|YP_005643060.1|	-	5.4e-05	22.5	3.2	0.0017	17.5	0.4	2.7	3	0	0	3	3	3	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|384433702|ref|YP_005643060.1|	-	0.0026	17.1	0.0	0.0042	16.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|384433702|ref|YP_005643060.1|	-	0.0026	17.0	0.4	0.0067	15.7	0.1	1.8	2	0	0	2	2	2	1	Thi4	family
NAD_binding_9	PF13454.6	gi|384433702|ref|YP_005643060.1|	-	0.0032	17.5	0.0	0.028	14.4	0.0	2.1	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|384433702|ref|YP_005643060.1|	-	0.0053	15.9	0.0	0.033	13.3	0.1	1.9	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|384433702|ref|YP_005643060.1|	-	0.014	16.0	0.9	1.5	9.4	0.1	2.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|384433702|ref|YP_005643060.1|	-	0.054	12.3	0.1	0.12	11.2	0.1	1.5	2	0	0	2	2	2	0	Tryptophan	halogenase
FAD_oxidored	PF12831.7	gi|384433702|ref|YP_005643060.1|	-	0.17	11.2	0.7	0.25	10.6	0.7	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
AsnC_trans_reg2	PF17805.1	gi|384433703|ref|YP_005643061.1|	-	1.2e-35	121.5	0.3	1.3e-16	60.5	0.1	2.4	2	0	0	2	2	2	2	AsnC-like	ligand	binding	domain
HTH_24	PF13412.6	gi|384433703|ref|YP_005643061.1|	-	0.023	14.3	2.2	0.074	12.6	0.0	3.1	4	1	0	4	4	4	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|384433703|ref|YP_005643061.1|	-	0.038	13.8	0.0	1.6	8.6	0.0	2.6	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
ENT	PF03735.14	gi|384433703|ref|YP_005643061.1|	-	0.091	12.8	1.6	0.88	9.7	0.1	2.9	3	0	0	3	3	3	0	ENT	domain
DUF4342	PF14242.6	gi|384433703|ref|YP_005643061.1|	-	0.099	12.6	5.3	1.2	9.2	0.2	3.1	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4342)
DUF2779	PF11074.8	gi|384433703|ref|YP_005643061.1|	-	0.15	12.5	1.4	33	5.0	0.0	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function(DUF2779)
DUF2102	PF09875.9	gi|384433703|ref|YP_005643061.1|	-	0.35	10.6	1.7	5.8	6.7	0.0	3.1	4	0	0	4	4	4	0	Uncharacterized	protein	conserved	in	archaea	(DUF2102)
PDT	PF00800.18	gi|384433704|ref|YP_005643062.1|	-	1.9e-49	168.0	0.2	2.5e-49	167.6	0.2	1.2	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|384433704|ref|YP_005643062.1|	-	4.6e-08	32.7	0.0	9.9e-08	31.6	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
PALP	PF00291.25	gi|384433705|ref|YP_005643063.1|	-	2.8e-81	273.1	0.0	3.4e-81	272.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|384433705|ref|YP_005643063.1|	-	0.0037	17.0	0.6	0.013	15.3	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|384433705|ref|YP_005643063.1|	-	0.12	12.9	0.6	0.47	11.1	0.1	2.1	2	0	0	2	2	2	0	ACT	domain
HIT	PF01230.23	gi|384433706|ref|YP_005643064.1|	-	1.2e-11	45.2	0.1	2.4e-11	44.2	0.0	1.6	2	0	0	2	2	2	1	HIT	domain
DcpS_C	PF11969.8	gi|384433706|ref|YP_005643064.1|	-	2e-07	31.5	0.0	3.4e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|384433706|ref|YP_005643064.1|	-	3.4e-07	30.2	0.3	6e-07	29.4	0.3	1.5	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
Rad51	PF08423.11	gi|384433707|ref|YP_005643065.1|	-	6.2e-90	300.9	0.0	7.4e-90	300.7	0.0	1.1	1	0	0	1	1	1	1	Rad51
RecA	PF00154.21	gi|384433707|ref|YP_005643065.1|	-	6.1e-18	65.2	0.1	8.1e-18	64.8	0.1	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|384433707|ref|YP_005643065.1|	-	1.1e-10	41.3	0.0	1.8e-10	40.6	0.0	1.3	1	0	0	1	1	1	1	KaiC
HHH_5	PF14520.6	gi|384433707|ref|YP_005643065.1|	-	1.1e-08	35.6	0.3	3.4e-08	34.0	0.3	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
AAA_25	PF13481.6	gi|384433707|ref|YP_005643065.1|	-	1.5e-07	31.2	0.0	2.3e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|384433707|ref|YP_005643065.1|	-	2e-05	24.4	0.1	0.00055	19.7	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|384433707|ref|YP_005643065.1|	-	0.0012	19.4	0.0	0.0023	18.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|384433707|ref|YP_005643065.1|	-	0.0095	16.2	0.0	0.018	15.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Cdd1	PF11731.8	gi|384433707|ref|YP_005643065.1|	-	0.049	13.9	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Pathogenicity	locus
HHH_2	PF12826.7	gi|384433707|ref|YP_005643065.1|	-	0.14	12.3	0.2	1.3	9.2	0.1	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
UPF0113	PF03657.13	gi|384433708|ref|YP_005643066.1|	-	9e-05	22.7	0.8	0.00043	20.5	0.3	2.2	2	1	0	2	2	2	1	UPF0113	PUA	domain
Methyltr_RsmB-F	PF01189.17	gi|384433709|ref|YP_005643067.1|	-	3.8e-54	183.4	0.0	5.2e-54	182.9	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|384433709|ref|YP_005643067.1|	-	4.3e-15	56.0	0.0	1.2e-14	54.5	0.0	1.8	1	0	0	1	1	1	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Methyltransf_31	PF13847.6	gi|384433709|ref|YP_005643067.1|	-	5.9e-08	32.6	0.0	9.3e-08	32.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|384433709|ref|YP_005643067.1|	-	2.1e-07	31.2	0.0	3e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_4	PF02390.17	gi|384433709|ref|YP_005643067.1|	-	1.2e-05	24.8	0.1	4.7e-05	22.9	0.1	1.9	2	0	0	2	2	2	1	Putative	methyltransferase
PCMT	PF01135.19	gi|384433709|ref|YP_005643067.1|	-	0.00021	21.1	0.0	0.00032	20.5	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Cons_hypoth95	PF03602.15	gi|384433709|ref|YP_005643067.1|	-	0.0032	17.1	0.0	0.0054	16.4	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
DUF2431	PF10354.9	gi|384433709|ref|YP_005643067.1|	-	0.0033	17.7	0.0	0.0062	16.8	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2431)
MSG	PF02349.15	gi|384433709|ref|YP_005643067.1|	-	0.012	15.7	0.0	0.019	15.2	0.0	1.4	1	0	0	1	1	1	0	Major	surface	glycoprotein
Methyltransf_25	PF13649.6	gi|384433709|ref|YP_005643067.1|	-	0.023	15.4	0.0	0.067	13.9	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
Fibrillarin	PF01269.17	gi|384433709|ref|YP_005643067.1|	-	0.042	12.9	0.0	0.069	12.2	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
RrnaAD	PF00398.20	gi|384433709|ref|YP_005643067.1|	-	0.045	12.8	0.0	0.072	12.2	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Ubie_methyltran	PF01209.18	gi|384433709|ref|YP_005643067.1|	-	0.15	11.4	0.7	2.7	7.2	0.1	2.6	2	2	2	4	4	4	0	ubiE/COQ5	methyltransferase	family
CYTH	PF01928.21	gi|384433710|ref|YP_005643068.1|	-	7.2e-31	107.5	1.8	8.6e-31	107.2	1.8	1.2	1	0	0	1	1	1	1	CYTH	domain
TxDE	PF18711.1	gi|384433710|ref|YP_005643068.1|	-	0.022	14.9	0.5	0.44	10.7	0.1	2.5	2	0	0	2	2	2	0	Toxoflavin-degrading	enzyme
DUF2525	PF10733.9	gi|384433710|ref|YP_005643068.1|	-	0.095	13.0	0.0	0.28	11.5	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2525)
Glyoxalase_4	PF13669.6	gi|384433710|ref|YP_005643068.1|	-	0.15	12.4	0.0	0.38	11.1	0.0	1.7	2	0	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
SAM_adeno_trans	PF01887.16	gi|384433711|ref|YP_005643069.1|	-	8.1e-74	248.0	0.0	9.2e-74	247.8	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
CTP_transf_like	PF01467.26	gi|384433712|ref|YP_005643070.1|	-	2.7e-19	69.8	0.0	9.8e-19	68.0	0.0	1.8	1	1	0	1	1	1	1	Cytidylyltransferase-like
FlpD	PF02662.16	gi|384433712|ref|YP_005643070.1|	-	0.17	11.9	0.0	0.23	11.4	0.0	1.2	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
DUF99	PF01949.16	gi|384433713|ref|YP_005643071.1|	-	3.5e-24	85.2	0.3	1.2e-23	83.4	0.3	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF99
Tugs	PF17840.1	gi|384433713|ref|YP_005643071.1|	-	0.055	13.7	0.1	4.2	7.6	0.0	2.3	2	0	0	2	2	2	0	Tethering	Ubl4a	to	BAGS	domain
Cdc6_C	PF09079.11	gi|384433714|ref|YP_005643072.1|	-	4.6e-23	81.0	0.2	1.6e-22	79.2	0.2	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|384433714|ref|YP_005643072.1|	-	9.1e-13	48.7	0.0	2.2e-12	47.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384433714|ref|YP_005643072.1|	-	3.4e-11	43.8	0.0	6.7e-10	39.6	0.0	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|384433714|ref|YP_005643072.1|	-	9.6e-10	39.0	0.0	2.5e-09	37.6	0.0	1.8	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|384433714|ref|YP_005643072.1|	-	5e-06	26.6	5.0	1.4e-05	25.1	2.6	2.6	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|384433714|ref|YP_005643072.1|	-	7.5e-06	25.5	0.0	1.4e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|384433714|ref|YP_005643072.1|	-	4.3e-05	22.8	0.0	0.00016	20.9	0.0	1.9	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|384433714|ref|YP_005643072.1|	-	0.00097	18.4	0.1	0.0015	17.8	0.1	1.4	1	0	0	1	1	1	1	NB-ARC	domain
DEAD	PF00270.29	gi|384433714|ref|YP_005643072.1|	-	0.003	17.4	0.4	1.4	8.6	0.1	2.4	1	1	1	2	2	2	2	DEAD/DEAH	box	helicase
PIF1	PF05970.14	gi|384433714|ref|YP_005643072.1|	-	0.0034	16.6	0.1	0.011	14.9	0.0	1.8	2	0	0	2	2	2	1	PIF1-like	helicase
ResIII	PF04851.15	gi|384433714|ref|YP_005643072.1|	-	0.0056	16.7	0.0	0.015	15.3	0.0	1.5	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
RNA_helicase	PF00910.22	gi|384433714|ref|YP_005643072.1|	-	0.0075	16.6	0.2	0.29	11.6	0.0	2.4	2	0	0	2	2	2	1	RNA	helicase
AAA_7	PF12775.7	gi|384433714|ref|YP_005643072.1|	-	0.014	14.9	0.0	0.026	14.0	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
KAP_NTPase	PF07693.14	gi|384433714|ref|YP_005643072.1|	-	0.015	14.5	0.4	2.3	7.4	0.0	2.3	1	1	1	2	2	2	0	KAP	family	P-loop	domain
Bac_DnaA	PF00308.18	gi|384433714|ref|YP_005643072.1|	-	0.016	15.1	0.2	0.63	9.8	0.0	2.2	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_5	PF07728.14	gi|384433714|ref|YP_005643072.1|	-	0.02	14.9	0.0	0.086	12.8	0.0	2.1	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
TrwB_AAD_bind	PF10412.9	gi|384433714|ref|YP_005643072.1|	-	0.021	13.7	0.1	0.33	9.8	0.0	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_32	PF13654.6	gi|384433714|ref|YP_005643072.1|	-	0.022	13.6	1.4	0.028	13.2	0.0	1.9	3	0	0	3	3	3	0	AAA	domain
Pox_A32	PF04665.12	gi|384433714|ref|YP_005643072.1|	-	0.025	14.1	2.1	0.054	12.9	2.1	1.6	1	1	0	1	1	1	0	Poxvirus	A32	protein
NACHT	PF05729.12	gi|384433714|ref|YP_005643072.1|	-	0.038	13.9	0.0	0.087	12.7	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|384433714|ref|YP_005643072.1|	-	0.041	13.6	0.1	0.11	12.2	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|384433714|ref|YP_005643072.1|	-	0.083	12.3	0.1	13	5.2	0.0	2.3	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_18	PF13238.6	gi|384433714|ref|YP_005643072.1|	-	0.12	12.9	0.2	0.35	11.4	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
E2F_TDP	PF02319.20	gi|384433714|ref|YP_005643072.1|	-	0.48	10.5	3.3	1.5	8.9	1.7	2.7	2	1	0	2	2	2	0	E2F/DP	family	winged-helix	DNA-binding	domain
DUF1743	PF08489.11	gi|384433715|ref|YP_005643073.1|	-	4.4e-36	123.5	0.0	8.4e-36	122.6	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
Zn_Tnp_IS1595	PF12760.7	gi|384433715|ref|YP_005643073.1|	-	0.012	15.6	2.5	0.021	14.8	2.5	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384433715|ref|YP_005643073.1|	-	0.019	15.1	0.3	1.4	9.1	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
Intein_splicing	PF14890.6	gi|384433715|ref|YP_005643073.1|	-	0.11	12.4	0.4	0.27	11.2	0.4	1.6	1	0	0	1	1	1	0	Intein	splicing	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433715|ref|YP_005643073.1|	-	0.11	12.4	2.4	0.2	11.6	2.4	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|384433715|ref|YP_005643073.1|	-	0.16	12.3	0.5	0.31	11.4	0.5	1.4	1	0	0	1	1	1	0	C1	domain
zf_Rg	PF17915.1	gi|384433715|ref|YP_005643073.1|	-	0.87	9.0	4.8	1.6	8.2	4.8	1.4	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
AsnC_trans_reg	PF01037.21	gi|384433716|ref|YP_005643074.1|	-	6.6e-19	67.7	0.2	7.4e-19	67.5	0.2	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
NapD	PF03927.13	gi|384433716|ref|YP_005643074.1|	-	0.0087	16.1	0.2	0.016	15.2	0.2	1.4	1	1	0	1	1	1	1	NapD	protein
PRESAN	PF09687.10	gi|384433716|ref|YP_005643074.1|	-	0.014	15.9	0.4	0.018	15.6	0.4	1.1	1	0	0	1	1	1	0	Plasmodium	RESA	N-terminal
GYD	PF08734.11	gi|384433716|ref|YP_005643074.1|	-	0.036	14.0	0.0	0.039	13.9	0.0	1.2	1	0	0	1	1	1	0	GYD	domain
Spore_YhcN_YlaJ	PF09580.10	gi|384433716|ref|YP_005643074.1|	-	0.044	13.9	0.5	0.053	13.6	0.5	1.1	1	0	0	1	1	1	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
Sec61_beta	PF03911.16	gi|384433717|ref|YP_005643075.1|	-	4.7e-16	58.5	0.5	5.3e-16	58.4	0.5	1.1	1	0	0	1	1	1	1	Sec61beta	family
PcrB	PF01884.17	gi|384433718|ref|YP_005643076.1|	-	9.1e-53	179.0	0.9	1.1e-52	178.7	0.9	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|384433718|ref|YP_005643076.1|	-	3.1e-07	30.1	0.1	5e-07	29.4	0.1	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
TMP-TENI	PF02581.17	gi|384433718|ref|YP_005643076.1|	-	0.0011	18.4	0.0	0.0024	17.2	0.0	1.6	1	1	0	1	1	1	1	Thiamine	monophosphate	synthase
DHO_dh	PF01180.21	gi|384433718|ref|YP_005643076.1|	-	0.0013	18.0	0.4	0.0018	17.5	0.4	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
G3P_antiterm	PF04309.12	gi|384433718|ref|YP_005643076.1|	-	0.0034	16.8	0.2	0.0067	15.9	0.2	1.4	1	0	0	1	1	1	1	Glycerol-3-phosphate	responsive	antiterminator
ThiG	PF05690.14	gi|384433718|ref|YP_005643076.1|	-	0.0063	15.9	0.6	0.012	14.9	0.4	1.6	1	1	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
Trp_syntA	PF00290.20	gi|384433718|ref|YP_005643076.1|	-	0.02	13.7	0.2	0.034	13.0	0.2	1.3	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
IMPDH	PF00478.25	gi|384433718|ref|YP_005643076.1|	-	0.021	13.8	0.1	0.18	10.8	0.1	1.9	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
DUF561	PF04481.12	gi|384433718|ref|YP_005643076.1|	-	0.028	13.6	1.3	0.064	12.4	0.5	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF561)
DpaA_N	PF16924.5	gi|384433718|ref|YP_005643076.1|	-	0.087	12.9	0.1	0.21	11.7	0.1	1.6	1	0	0	1	1	1	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
FMN_dh	PF01070.18	gi|384433718|ref|YP_005643076.1|	-	0.14	11.2	0.0	0.18	10.8	0.0	1.1	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
Elf1	PF05129.13	gi|384433719|ref|YP_005643077.1|	-	1.3e-19	70.0	0.2	1.7e-19	69.6	0.2	1.2	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.6	gi|384433719|ref|YP_005643077.1|	-	0.00056	20.2	0.2	0.001	19.4	0.2	1.4	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.10	gi|384433719|ref|YP_005643077.1|	-	0.0079	16.3	0.2	0.014	15.5	0.2	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|384433719|ref|YP_005643077.1|	-	0.0097	15.3	2.2	0.15	11.5	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433719|ref|YP_005643077.1|	-	0.025	14.5	0.6	0.041	13.8	0.6	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.6	gi|384433719|ref|YP_005643077.1|	-	0.03	14.2	3.1	0.13	12.2	3.0	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384433719|ref|YP_005643077.1|	-	0.031	14.3	0.4	0.062	13.3	0.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
CpXC	PF14353.6	gi|384433719|ref|YP_005643077.1|	-	0.045	13.8	1.5	1.9	8.5	0.0	2.2	1	1	1	2	2	2	0	CpXC	protein
Nop10p	PF04135.12	gi|384433719|ref|YP_005643077.1|	-	0.052	13.6	1.5	5	7.2	0.0	3.0	3	0	0	3	3	3	0	Nucleolar	RNA-binding	protein,	Nop10p	family
zf_UBZ	PF18439.1	gi|384433719|ref|YP_005643077.1|	-	0.072	12.7	1.1	0.44	10.2	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
eIF-5_eIF-2B	PF01873.17	gi|384433719|ref|YP_005643077.1|	-	0.078	12.9	1.3	0.11	12.4	0.6	1.6	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
Ribosomal_L37ae	PF01780.19	gi|384433719|ref|YP_005643077.1|	-	0.12	12.4	0.8	0.18	11.9	0.8	1.3	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
Rubredoxin	PF00301.20	gi|384433719|ref|YP_005643077.1|	-	0.14	12.2	1.4	0.23	11.5	0.1	1.9	2	0	0	2	2	2	0	Rubredoxin
Ribosomal_L32p	PF01783.23	gi|384433719|ref|YP_005643077.1|	-	0.34	11.2	3.1	5.3	7.4	3.1	2.2	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
zf-Mss51	PF13824.6	gi|384433719|ref|YP_005643077.1|	-	0.83	9.8	3.1	1.4	9.1	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TF_Zn_Ribbon	PF08271.12	gi|384433719|ref|YP_005643077.1|	-	1.7	8.2	9.3	0.057	12.9	2.8	2.0	2	1	0	2	2	2	0	TFIIB	zinc-binding
Ac76	PF05814.11	gi|384433720|ref|YP_005643078.1|	-	0.003	17.5	0.9	0.0032	17.4	0.9	1.1	1	0	0	1	1	1	1	Orf76	(Ac76)
SWIM	PF04434.17	gi|384433721|ref|YP_005643079.1|	-	5.3e-08	32.4	0.3	8.1e-08	31.8	0.3	1.3	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2122	PF09895.9	gi|384433722|ref|YP_005643080.1|	-	3.1e-32	111.1	0.0	4e-32	110.8	0.0	1.1	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
DNA_methylase	PF00145.17	gi|384433723|ref|YP_005643081.1|	-	3.9e-55	187.5	0.0	9.9e-41	140.2	0.0	2.1	1	1	1	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.10	gi|384433723|ref|YP_005643081.1|	-	0.0016	18.0	0.0	0.0036	16.9	0.0	1.6	2	0	0	2	2	2	1	RNA	cap	guanine-N2	methyltransferase
Ring_hydroxyl_B	PF00866.18	gi|384433723|ref|YP_005643081.1|	-	0.16	12.0	0.1	0.26	11.4	0.1	1.3	1	0	0	1	1	1	0	Ring	hydroxylating	beta	subunit
TFIIE_alpha	PF02002.17	gi|384433724|ref|YP_005643082.1|	-	1.1e-21	76.6	4.0	1.1e-21	76.6	4.0	2.0	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_20	PF12840.7	gi|384433724|ref|YP_005643082.1|	-	7.5e-05	22.7	0.0	0.00015	21.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|384433724|ref|YP_005643082.1|	-	0.0012	18.7	0.0	0.0022	17.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_9	PF08221.11	gi|384433724|ref|YP_005643082.1|	-	0.0019	18.2	0.1	0.013	15.6	0.0	2.3	3	0	0	3	3	3	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_24	PF13412.6	gi|384433724|ref|YP_005643082.1|	-	0.003	17.1	0.1	0.0051	16.4	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|384433724|ref|YP_005643082.1|	-	0.0043	17.2	0.0	0.0074	16.5	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Phage_rep_org_N	PF09681.10	gi|384433724|ref|YP_005643082.1|	-	0.0055	16.6	0.0	0.014	15.3	0.0	1.6	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_IclR	PF09339.10	gi|384433724|ref|YP_005643082.1|	-	0.0071	16.1	0.0	0.011	15.6	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Sigma70_r3	PF04539.16	gi|384433724|ref|YP_005643082.1|	-	0.0074	16.4	0.0	0.019	15.1	0.0	1.7	1	0	0	1	1	1	1	Sigma-70	region	3
GntR	PF00392.21	gi|384433724|ref|YP_005643082.1|	-	0.0085	15.7	0.1	0.02	14.5	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_12	PF08461.10	gi|384433724|ref|YP_005643082.1|	-	0.013	15.5	1.9	0.014	15.4	0.2	1.9	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_5	PF01022.20	gi|384433724|ref|YP_005643082.1|	-	0.013	15.3	0.0	0.03	14.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|384433724|ref|YP_005643082.1|	-	0.019	14.9	0.0	0.041	13.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|384433724|ref|YP_005643082.1|	-	0.02	14.6	1.3	0.021	14.5	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_Crp_2	PF13545.6	gi|384433724|ref|YP_005643082.1|	-	0.021	14.8	0.0	0.037	14.0	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TF_Zn_Ribbon	PF08271.12	gi|384433724|ref|YP_005643082.1|	-	0.022	14.3	0.5	0.079	12.5	0.2	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
HTH_11	PF08279.12	gi|384433724|ref|YP_005643082.1|	-	0.024	14.6	0.1	0.024	14.6	0.1	1.7	2	0	0	2	2	2	0	HTH	domain
Rrf2	PF02082.20	gi|384433724|ref|YP_005643082.1|	-	0.041	14.2	0.0	0.07	13.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|384433724|ref|YP_005643082.1|	-	0.042	13.8	0.1	0.11	12.5	0.1	1.6	1	0	0	1	1	1	0	MarR	family
LexA_DNA_bind	PF01726.16	gi|384433724|ref|YP_005643082.1|	-	0.066	13.0	0.1	0.16	11.8	0.0	1.6	2	0	0	2	2	1	0	LexA	DNA	binding	domain
HTH_DeoR	PF08220.12	gi|384433724|ref|YP_005643082.1|	-	0.075	12.8	1.5	0.13	12.0	0.1	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
PhnA_Zn_Ribbon	PF08274.12	gi|384433724|ref|YP_005643082.1|	-	0.1	12.5	0.1	2	8.5	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_10	PF10058.9	gi|384433724|ref|YP_005643082.1|	-	0.14	11.9	0.7	0.33	10.7	0.7	1.7	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
HR1	PF02185.16	gi|384433724|ref|YP_005643082.1|	-	2.2	8.4	7.3	2.8	8.1	0.1	2.7	3	0	0	3	3	3	0	Hr1	repeat
Trm56	PF01994.16	gi|384433725|ref|YP_005643083.1|	-	1.1e-49	167.3	0.2	1.4e-49	167.0	0.2	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SpoU_methylase	PF00588.19	gi|384433725|ref|YP_005643083.1|	-	0.0023	18.1	0.0	0.0028	17.8	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
MMR_HSR1	PF01926.23	gi|384433726|ref|YP_005643084.1|	-	8.3e-19	67.8	0.2	1.8e-18	66.7	0.1	1.6	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|384433726|ref|YP_005643084.1|	-	6.8e-15	55.4	0.5	6.8e-15	55.4	0.5	1.8	2	0	0	2	2	1	1	GTP-binding	GTPase	Middle	Region
FeoB_N	PF02421.18	gi|384433726|ref|YP_005643084.1|	-	3.2e-12	46.3	0.7	7.2e-12	45.1	0.1	1.9	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
GTP-bdg_N	PF13167.6	gi|384433726|ref|YP_005643084.1|	-	2.4e-09	37.7	0.3	5.2e-09	36.7	0.3	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
GTP_EFTU	PF00009.27	gi|384433726|ref|YP_005643084.1|	-	1.3e-08	34.7	0.0	8.6e-06	25.4	0.0	2.6	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
SRPRB	PF09439.10	gi|384433726|ref|YP_005643084.1|	-	1.7e-06	27.6	1.0	2.6e-06	27.0	0.2	1.7	1	1	1	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
Arf	PF00025.21	gi|384433726|ref|YP_005643084.1|	-	9.7e-05	21.9	0.2	0.00037	20.0	0.2	1.9	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
MMR_HSR1_Xtn	PF16897.5	gi|384433726|ref|YP_005643084.1|	-	0.00011	22.2	0.1	0.00034	20.6	0.1	1.9	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
EcKinase	PF02958.20	gi|384433726|ref|YP_005643084.1|	-	0.0014	18.0	0.1	0.0021	17.4	0.1	1.2	1	0	0	1	1	1	1	Ecdysteroid	kinase
Moulting_cycle	PF04870.16	gi|384433726|ref|YP_005643084.1|	-	0.0092	15.3	0.6	0.017	14.4	0.0	1.7	2	0	0	2	2	2	1	Moulting	cycle
Dynamin_N	PF00350.23	gi|384433726|ref|YP_005643084.1|	-	0.034	14.2	0.9	0.36	10.9	0.3	2.5	1	1	1	2	2	2	0	Dynamin	family
ABC_tran	PF00005.27	gi|384433726|ref|YP_005643084.1|	-	0.047	14.2	0.3	0.19	12.2	0.2	2.0	1	1	1	2	2	2	0	ABC	transporter
Roc	PF08477.13	gi|384433726|ref|YP_005643084.1|	-	0.057	13.6	0.1	0.48	10.6	0.1	2.3	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Tk-SP_N-pro	PF18237.1	gi|384433726|ref|YP_005643084.1|	-	0.13	12.4	0.1	0.13	12.4	0.1	2.4	3	0	0	3	3	3	0	Tk-SP	N-propeptide	domain
cobW	PF02492.19	gi|384433726|ref|YP_005643084.1|	-	0.46	10.1	2.3	6.1	6.4	0.4	2.5	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
HTH_3	PF01381.22	gi|384433727|ref|YP_005643085.1|	-	8.7e-12	44.9	1.8	1.4e-11	44.3	1.8	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|384433727|ref|YP_005643085.1|	-	2.1e-07	30.8	0.8	3.8e-07	30.0	0.8	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|384433727|ref|YP_005643085.1|	-	2.1e-07	31.2	0.0	3.5e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|384433727|ref|YP_005643085.1|	-	1.8e-06	27.7	0.1	3.6e-06	26.7	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|384433727|ref|YP_005643085.1|	-	0.00097	19.0	0.4	0.0017	18.3	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MqsA_antitoxin	PF15731.5	gi|384433727|ref|YP_005643085.1|	-	0.0019	18.3	3.2	0.019	15.1	2.9	2.1	1	1	0	1	1	1	1	Antitoxin	component	of	bacterial	toxin-antitoxin	system,	MqsA
HTH_23	PF13384.6	gi|384433727|ref|YP_005643085.1|	-	0.02	14.7	0.2	0.054	13.3	0.2	1.8	1	1	0	1	1	1	0	Homeodomain-like	domain
HTH_11	PF08279.12	gi|384433727|ref|YP_005643085.1|	-	0.021	14.8	0.1	0.037	14.0	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_24	PF13412.6	gi|384433727|ref|YP_005643085.1|	-	0.064	12.8	0.2	0.14	11.8	0.2	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_26	PF13443.6	gi|384433727|ref|YP_005643085.1|	-	0.081	13.4	0.1	0.15	12.5	0.1	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
Sof1	PF04158.14	gi|384433727|ref|YP_005643085.1|	-	0.1	12.9	3.4	0.54	10.6	0.2	2.2	2	0	0	2	2	2	0	Sof1-like	domain
Pou	PF00157.17	gi|384433727|ref|YP_005643085.1|	-	0.12	12.4	0.5	0.29	11.1	0.5	1.7	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
YdaS_antitoxin	PF15943.5	gi|384433727|ref|YP_005643085.1|	-	0.12	12.2	0.2	0.23	11.4	0.2	1.5	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
RPA_C	PF08784.11	gi|384433727|ref|YP_005643085.1|	-	0.12	13.0	0.1	0.2	12.4	0.1	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Arc_trans_TRASH	PF08394.10	gi|384433727|ref|YP_005643085.1|	-	0.14	12.5	1.8	0.31	11.4	1.8	1.6	1	0	0	1	1	1	0	Archaeal	TRASH	domain
ABC_tran_Xtn	PF12848.7	gi|384433727|ref|YP_005643085.1|	-	0.84	9.7	5.0	0.23	11.5	0.9	1.9	2	0	0	2	2	2	0	ABC	transporter
AAA	PF00004.29	gi|384433728|ref|YP_005643086.1|	-	1.3e-42	145.4	0.0	2.7e-42	144.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|384433728|ref|YP_005643086.1|	-	1.6e-15	56.6	0.0	3.8e-15	55.4	0.0	1.6	1	0	0	1	1	1	1	AAA+	lid	domain
Prot_ATP_ID_OB	PF16450.5	gi|384433728|ref|YP_005643086.1|	-	8.5e-11	41.7	0.2	2.1e-10	40.4	0.2	1.7	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	C-terminal	domain
AAA_2	PF07724.14	gi|384433728|ref|YP_005643086.1|	-	8.8e-07	29.2	0.0	2.3e-06	27.8	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|384433728|ref|YP_005643086.1|	-	2.2e-06	28.1	0.1	0.00017	22.0	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|384433728|ref|YP_005643086.1|	-	5.7e-06	26.2	0.0	1.8e-05	24.5	0.0	1.8	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|384433728|ref|YP_005643086.1|	-	6.6e-06	26.2	0.1	3.7e-05	23.7	0.1	2.2	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|384433728|ref|YP_005643086.1|	-	0.00011	22.5	0.2	0.0069	16.7	0.0	2.6	1	1	1	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|384433728|ref|YP_005643086.1|	-	0.00033	20.7	0.1	0.003	17.6	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|384433728|ref|YP_005643086.1|	-	0.00084	18.6	0.0	0.0016	17.7	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|384433728|ref|YP_005643086.1|	-	0.00095	18.6	0.0	0.0025	17.2	0.0	1.7	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
Prot_ATP_OB_N	PF17758.1	gi|384433728|ref|YP_005643086.1|	-	0.0013	18.3	0.1	0.0034	17.0	0.1	1.7	1	0	0	1	1	1	1	Proteasomal	ATPase	OB	N-terminal	domain
AAA_28	PF13521.6	gi|384433728|ref|YP_005643086.1|	-	0.0016	18.7	0.0	0.0033	17.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|384433728|ref|YP_005643086.1|	-	0.0016	18.2	0.0	0.0031	17.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|384433728|ref|YP_005643086.1|	-	0.0028	18.0	0.0	0.0071	16.7	0.0	1.7	1	0	0	1	1	1	1	RNA	helicase
TIP49	PF06068.13	gi|384433728|ref|YP_005643086.1|	-	0.0029	16.9	0.0	0.006	15.8	0.0	1.5	1	0	0	1	1	1	1	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|384433728|ref|YP_005643086.1|	-	0.0036	17.5	0.0	0.0067	16.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|384433728|ref|YP_005643086.1|	-	0.0041	16.9	0.0	0.0088	15.8	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.6	gi|384433728|ref|YP_005643086.1|	-	0.0077	16.8	0.0	0.023	15.2	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.26	gi|384433728|ref|YP_005643086.1|	-	0.011	15.5	0.1	0.063	13.0	0.0	2.3	2	1	1	3	3	3	0	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|384433728|ref|YP_005643086.1|	-	0.015	15.2	0.1	0.36	10.7	0.0	2.4	1	1	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|384433728|ref|YP_005643086.1|	-	0.016	14.7	0.0	0.04	13.4	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|384433728|ref|YP_005643086.1|	-	0.019	14.9	0.2	0.087	12.7	0.1	2.1	2	0	0	2	2	2	0	NACHT	domain
Bac_DnaA	PF00308.18	gi|384433728|ref|YP_005643086.1|	-	0.027	14.3	0.0	0.099	12.5	0.0	2.1	2	1	0	2	2	1	0	Bacterial	dnaA	protein
Zeta_toxin	PF06414.12	gi|384433728|ref|YP_005643086.1|	-	0.033	13.5	0.0	0.061	12.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Parvo_NS1	PF01057.17	gi|384433728|ref|YP_005643086.1|	-	0.041	13.0	0.0	0.076	12.1	0.0	1.4	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
TFIID-18kDa	PF02269.16	gi|384433728|ref|YP_005643086.1|	-	0.057	13.4	0.7	0.15	12.1	0.1	1.9	2	0	0	2	2	1	0	Transcription	initiation	factor	IID,	18kD	subunit
TMF_TATA_bd	PF12325.8	gi|384433728|ref|YP_005643086.1|	-	0.061	13.5	5.7	0.15	12.3	0.3	3.1	3	1	0	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
AAA_25	PF13481.6	gi|384433728|ref|YP_005643086.1|	-	0.066	12.8	0.1	0.17	11.5	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
SpoOE-like	PF09388.10	gi|384433728|ref|YP_005643086.1|	-	0.071	13.0	0.6	0.071	13.0	0.6	3.4	3	0	0	3	3	3	0	Spo0E	like	sporulation	regulatory	protein
PhoH	PF02562.16	gi|384433728|ref|YP_005643086.1|	-	0.082	12.4	0.1	0.23	10.9	0.1	1.7	1	0	0	1	1	1	0	PhoH-like	protein
cobW	PF02492.19	gi|384433728|ref|YP_005643086.1|	-	0.095	12.3	0.0	0.21	11.2	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_30	PF13604.6	gi|384433728|ref|YP_005643086.1|	-	0.1	12.3	0.1	0.21	11.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|384433728|ref|YP_005643086.1|	-	0.13	12.2	0.0	0.26	11.3	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|384433728|ref|YP_005643086.1|	-	0.15	12.6	0.2	0.9	10.0	0.0	2.3	2	1	1	3	3	2	0	ABC	transporter
DHHA1	PF02272.19	gi|384433728|ref|YP_005643086.1|	-	0.19	12.1	1.7	1.5	9.3	0.0	2.7	3	0	0	3	3	2	0	DHHA1	domain
ATPase	PF06745.13	gi|384433728|ref|YP_005643086.1|	-	0.41	10.0	4.9	0.23	10.8	0.2	2.8	3	1	0	3	3	3	0	KaiC
NTPase_1	PF03266.15	gi|384433728|ref|YP_005643086.1|	-	0.79	9.6	3.7	8.6	6.2	0.0	3.3	2	2	2	4	4	4	0	NTPase
DUF16	PF01519.16	gi|384433728|ref|YP_005643086.1|	-	0.84	10.2	3.4	2.5	8.6	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	DUF16
bZIP_1	PF00170.21	gi|384433728|ref|YP_005643086.1|	-	1.1	9.4	8.3	0.096	12.8	1.5	2.5	3	0	0	3	3	2	0	bZIP	transcription	factor
PAC2	PF09754.9	gi|384433729|ref|YP_005643087.1|	-	2.6e-32	112.6	0.0	3e-32	112.4	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
TGT	PF01702.18	gi|384433730|ref|YP_005643088.1|	-	1.5e-61	208.5	0.0	2e-61	208.1	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
DUF5591	PF17884.1	gi|384433730|ref|YP_005643088.1|	-	8e-06	25.8	0.1	3.8e-05	23.6	0.0	2.3	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF5591)
Lsm_C	PF14894.6	gi|384433731|ref|YP_005643089.1|	-	8.3e-31	105.6	0.1	1.6e-30	104.6	0.1	1.5	1	0	0	1	1	1	1	Lsm	C-terminal
LSM	PF01423.22	gi|384433731|ref|YP_005643089.1|	-	2.4e-05	23.9	1.0	0.0002	21.0	1.0	2.2	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|384433731|ref|YP_005643089.1|	-	0.00035	20.7	0.1	0.00066	19.8	0.1	1.5	1	1	0	1	1	1	1	Ataxin	2	SM	domain
LSM14	PF12701.7	gi|384433731|ref|YP_005643089.1|	-	0.024	14.7	0.7	0.071	13.2	0.7	2.0	1	1	0	1	1	1	0	Scd6-like	Sm	domain
RNA_pol_RpbG	PF16992.5	gi|384433732|ref|YP_005643090.1|	-	6.5e-42	142.4	4.4	7.5e-42	142.2	4.4	1.0	1	0	0	1	1	1	1	DNA-directed	RNA	polymerase,	subunit	G
2-ph_phosp	PF04029.14	gi|384433732|ref|YP_005643090.1|	-	0.00031	20.0	0.0	0.00035	19.8	0.0	1.2	1	1	0	1	1	1	1	2-phosphosulpholactate	phosphatase
Proteasome	PF00227.26	gi|384433733|ref|YP_005643091.1|	-	8.5e-52	175.4	0.2	9.9e-52	175.2	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
tRNA-synt_His	PF13393.6	gi|384433734|ref|YP_005643092.1|	-	7.2e-67	225.9	0.0	8.8e-67	225.6	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.25	gi|384433734|ref|YP_005643092.1|	-	2.4e-14	53.7	0.1	3.4e-13	50.0	0.1	2.2	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|384433734|ref|YP_005643092.1|	-	3.3e-12	46.4	0.2	9.9e-12	44.9	0.2	1.9	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.20	gi|384433734|ref|YP_005643092.1|	-	2.4e-07	30.5	0.0	8.7e-07	28.7	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_synthFbeta	PF17759.1	gi|384433734|ref|YP_005643092.1|	-	0.00033	20.2	0.0	0.00055	19.4	0.0	1.3	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
T3RM_EcoP15I_C	PF18273.1	gi|384433734|ref|YP_005643092.1|	-	0.028	14.7	2.7	0.08	13.3	2.7	1.8	1	0	0	1	1	1	0	Type	III	R-M	EcoP15I	C-terminal	domain
Ribosomal_L22	PF00237.19	gi|384433734|ref|YP_005643092.1|	-	0.22	11.8	0.9	0.55	10.5	0.9	1.6	1	0	0	1	1	1	0	Ribosomal	protein	L22p/L17e
tRNA_int_endo	PF01974.17	gi|384433735|ref|YP_005643093.1|	-	2.7e-11	43.4	0.5	4.7e-11	42.6	0.3	1.5	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
Sen15	PF09631.10	gi|384433735|ref|YP_005643093.1|	-	0.00082	19.6	0.8	0.0016	18.7	0.4	1.6	1	1	1	2	2	2	1	Sen15	protein
LPD30	PF18850.1	gi|384433735|ref|YP_005643093.1|	-	0.026	14.3	0.0	0.04	13.7	0.0	1.5	1	1	0	1	1	1	0	Large	polyvalent	protein	associated	domain	30
rpo132	PF12415.8	gi|384433735|ref|YP_005643093.1|	-	0.041	13.2	0.0	0.077	12.3	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	DNA	dependent	RNA	polymerase
TF_Zn_Ribbon	PF08271.12	gi|384433736|ref|YP_005643094.1|	-	2.1e-11	43.2	1.0	4e-11	42.2	1.0	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-RRN7	PF11781.8	gi|384433736|ref|YP_005643094.1|	-	0.00045	19.8	0.8	0.00073	19.2	0.3	1.6	2	0	0	2	2	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Ribosomal_S27e	PF01667.17	gi|384433736|ref|YP_005643094.1|	-	0.00099	18.8	0.4	0.0016	18.1	0.4	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S27
zf-ribbon_3	PF13248.6	gi|384433736|ref|YP_005643094.1|	-	0.0082	15.5	4.0	0.48	9.9	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|384433736|ref|YP_005643094.1|	-	0.015	15.6	0.9	0.023	15.0	0.9	1.3	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
A2L_zn_ribbon	PF08792.10	gi|384433736|ref|YP_005643094.1|	-	0.02	14.6	3.4	0.04	13.7	3.4	1.5	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|384433736|ref|YP_005643094.1|	-	0.023	14.7	0.5	0.038	14.0	0.5	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-RRPl_C4	PF17026.5	gi|384433736|ref|YP_005643094.1|	-	0.026	14.6	3.7	0.078	13.1	2.9	2.1	2	1	0	2	2	2	0	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
OrfB_Zn_ribbon	PF07282.11	gi|384433736|ref|YP_005643094.1|	-	0.027	14.4	0.3	0.06	13.3	0.3	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
SR1P	PF13790.6	gi|384433736|ref|YP_005643094.1|	-	0.028	14.5	0.9	0.058	13.5	0.9	1.6	1	0	0	1	1	1	0	SR1	protein
zinc_ribbon_2	PF13240.6	gi|384433736|ref|YP_005643094.1|	-	0.045	13.5	3.5	0.78	9.5	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2318	PF10080.9	gi|384433736|ref|YP_005643094.1|	-	0.24	11.5	1.9	0.39	10.9	1.9	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
zf-ISL3	PF14690.6	gi|384433736|ref|YP_005643094.1|	-	0.32	11.7	0.8	27	5.5	0.0	2.4	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
TFIIS_C	PF01096.18	gi|384433736|ref|YP_005643094.1|	-	0.35	10.8	1.3	1.8	8.4	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-NADH-PPase	PF09297.11	gi|384433736|ref|YP_005643094.1|	-	0.41	10.3	3.1	8.7	6.1	0.8	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384433736|ref|YP_005643094.1|	-	0.5	10.4	3.2	6	6.9	0.1	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Prim_Zn_Ribbon	PF08273.12	gi|384433736|ref|YP_005643094.1|	-	1.3	9.3	4.4	5.3	7.4	4.4	1.9	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Zn-ribbon_8	PF09723.10	gi|384433736|ref|YP_005643094.1|	-	1.7	8.9	3.1	25	5.1	0.8	2.2	1	1	0	2	2	2	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|384433736|ref|YP_005643094.1|	-	3.5	7.6	4.5	30	4.6	4.5	2.1	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_4	PF13717.6	gi|384433736|ref|YP_005643094.1|	-	5.4	7.0	5.5	23	5.0	3.4	2.5	2	1	0	2	2	1	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|384433736|ref|YP_005643094.1|	-	7	6.5	6.2	28	4.6	1.0	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Cpn60_TCP1	PF00118.24	gi|384433737|ref|YP_005643095.1|	-	2e-174	580.9	13.0	2.3e-174	580.7	13.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF87	PF01935.17	gi|384433738|ref|YP_005643096.1|	-	1.5e-34	120.1	2.0	1.5e-34	120.1	2.0	2.6	2	1	1	3	3	3	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|384433738|ref|YP_005643096.1|	-	9e-15	54.2	0.3	1.5e-06	27.1	0.0	2.1	1	1	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.9	gi|384433738|ref|YP_005643096.1|	-	3.4e-08	32.8	0.1	5.4e-08	32.2	0.1	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|384433738|ref|YP_005643096.1|	-	5.5e-07	28.8	0.3	0.021	13.8	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
PhoH	PF02562.16	gi|384433738|ref|YP_005643096.1|	-	2.7e-06	27.0	0.4	0.0055	16.2	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
Zot	PF05707.12	gi|384433738|ref|YP_005643096.1|	-	4.7e-05	23.1	0.0	0.00074	19.2	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_22	PF13401.6	gi|384433738|ref|YP_005643096.1|	-	0.00029	21.1	0.0	1	9.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
T4SS-DNA_transf	PF02534.14	gi|384433738|ref|YP_005643096.1|	-	0.00047	19.1	0.8	0.082	11.7	0.1	2.3	2	0	0	2	2	2	2	Type	IV	secretory	system	Conjugative	DNA	transfer
CbiA	PF01656.23	gi|384433738|ref|YP_005643096.1|	-	0.0012	18.9	0.1	0.0069	16.4	0.0	2.2	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DEAD	PF00270.29	gi|384433738|ref|YP_005643096.1|	-	0.0032	17.2	1.6	1.1	9.0	0.0	2.9	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
IPT	PF01745.16	gi|384433738|ref|YP_005643096.1|	-	0.0036	16.7	0.0	0.0088	15.5	0.0	1.6	1	0	0	1	1	1	1	Isopentenyl	transferase
TraG-D_C	PF12696.7	gi|384433738|ref|YP_005643096.1|	-	0.0061	16.5	0.0	0.011	15.7	0.0	1.4	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
ResIII	PF04851.15	gi|384433738|ref|YP_005643096.1|	-	0.026	14.5	0.1	0.28	11.2	0.1	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_31	PF13614.6	gi|384433738|ref|YP_005643096.1|	-	0.037	13.9	4.1	0.044	13.7	0.1	2.8	2	1	0	3	3	3	0	AAA	domain
AAA	PF00004.29	gi|384433738|ref|YP_005643096.1|	-	0.046	14.1	0.9	1.8	9.0	0.0	3.0	4	0	0	4	4	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
APS_kinase	PF01583.20	gi|384433738|ref|YP_005643096.1|	-	0.09	12.7	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
SRP54	PF00448.22	gi|384433738|ref|YP_005643096.1|	-	0.11	12.1	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
CLP1_P	PF16575.5	gi|384433738|ref|YP_005643096.1|	-	0.13	12.1	0.1	5	6.9	0.0	2.4	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_30	PF13604.6	gi|384433738|ref|YP_005643096.1|	-	0.16	11.7	0.0	5.3	6.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|384433738|ref|YP_005643096.1|	-	0.17	12.4	1.6	2.7	8.5	0.0	3.1	3	1	1	4	4	4	0	ABC	transporter
LpxK	PF02606.14	gi|384433738|ref|YP_005643096.1|	-	0.17	11.0	0.1	0.27	10.3	0.1	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
Urm1	PF09138.11	gi|384433740|ref|YP_005643098.1|	-	5.1e-07	30.0	0.3	5.8e-07	29.8	0.3	1.1	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
ThiS	PF02597.20	gi|384433740|ref|YP_005643098.1|	-	0.00019	22.0	0.0	0.00023	21.7	0.0	1.2	1	0	0	1	1	1	1	ThiS	family
Ribosomal_S17e	PF00833.18	gi|384433741|ref|YP_005643099.1|	-	2.7e-13	49.9	3.7	2.8e-13	49.8	3.7	1.1	1	0	0	1	1	1	1	Ribosomal	S17
BAG6	PF12057.8	gi|384433741|ref|YP_005643099.1|	-	0.033	13.9	0.0	0.05	13.3	0.0	1.3	1	0	0	1	1	1	0	BCL2-associated	athanogene	6
FBPase_3	PF01950.16	gi|384433742|ref|YP_005643100.1|	-	2.4e-182	606.0	0.0	2.7e-182	605.8	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
ABC_tran	PF00005.27	gi|384433743|ref|YP_005643101.1|	-	1.4e-38	132.5	0.1	4e-21	76.0	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|384433743|ref|YP_005643101.1|	-	6.2e-15	55.8	6.3	0.00014	21.8	1.0	4.2	2	2	0	3	3	3	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384433743|ref|YP_005643101.1|	-	2.3e-13	50.1	10.7	1.1e-06	28.3	2.2	3.9	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.15	gi|384433743|ref|YP_005643101.1|	-	2.6e-12	46.4	1.8	6.6e-12	45.1	1.8	1.8	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
Fer4	PF00037.27	gi|384433743|ref|YP_005643101.1|	-	1e-07	31.4	5.7	1e-07	31.4	5.7	2.8	3	0	0	3	3	2	1	4Fe-4S	binding	domain
AAA	PF00004.29	gi|384433743|ref|YP_005643101.1|	-	1.7e-06	28.5	0.2	0.042	14.3	0.0	3.1	2	1	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Fer4_10	PF13237.6	gi|384433743|ref|YP_005643101.1|	-	4.3e-06	26.7	8.2	0.0003	20.8	1.2	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
AAA_16	PF13191.6	gi|384433743|ref|YP_005643101.1|	-	1e-05	26.0	0.0	0.062	13.7	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|384433743|ref|YP_005643101.1|	-	2.5e-05	24.9	0.8	0.25	11.8	0.2	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|384433743|ref|YP_005643101.1|	-	3.5e-05	23.8	3.0	0.07	13.2	0.2	3.5	3	1	0	3	3	3	2	AAA	domain
RNA_helicase	PF00910.22	gi|384433743|ref|YP_005643101.1|	-	0.0001	22.6	0.1	0.45	10.9	0.0	2.6	2	1	0	2	2	2	2	RNA	helicase
Fer4_7	PF12838.7	gi|384433743|ref|YP_005643101.1|	-	0.00011	22.7	19.2	0.00027	21.5	1.5	2.2	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
AAA_24	PF13479.6	gi|384433743|ref|YP_005643101.1|	-	0.00013	21.8	0.1	0.1	12.3	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Fer4_2	PF12797.7	gi|384433743|ref|YP_005643101.1|	-	0.00013	21.8	2.1	0.00013	21.8	2.1	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|384433743|ref|YP_005643101.1|	-	0.00022	21.2	13.6	0.00023	21.1	3.7	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_18	PF13238.6	gi|384433743|ref|YP_005643101.1|	-	0.00033	21.2	5.9	0.32	11.6	0.3	3.7	2	2	1	3	3	3	2	AAA	domain
AAA_22	PF13401.6	gi|384433743|ref|YP_005643101.1|	-	0.00037	20.8	3.0	0.8	10.0	0.0	3.4	2	1	0	2	2	2	1	AAA	domain
Fer4_9	PF13187.6	gi|384433743|ref|YP_005643101.1|	-	0.00038	20.5	7.5	0.00071	19.7	7.5	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Rad17	PF03215.15	gi|384433743|ref|YP_005643101.1|	-	0.00065	19.7	0.1	0.24	11.3	0.0	2.5	2	0	0	2	2	2	1	Rad17	P-loop	domain
NACHT	PF05729.12	gi|384433743|ref|YP_005643101.1|	-	0.00068	19.6	0.7	0.43	10.5	0.0	2.6	2	0	0	2	2	2	1	NACHT	domain
Fer4_21	PF14697.6	gi|384433743|ref|YP_005643101.1|	-	0.00079	19.5	9.0	0.0018	18.4	9.0	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_33	PF13671.6	gi|384433743|ref|YP_005643101.1|	-	0.0017	18.6	0.7	1.7	8.8	0.1	3.6	2	2	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|384433743|ref|YP_005643101.1|	-	0.0017	18.3	1.5	2.2	8.2	0.0	2.9	3	0	0	3	3	2	2	RsgA	GTPase
Fer4_16	PF13484.6	gi|384433743|ref|YP_005643101.1|	-	0.0018	19.1	4.0	0.0063	17.4	0.2	2.5	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
VirE	PF05272.11	gi|384433743|ref|YP_005643101.1|	-	0.0031	17.3	0.1	0.3	10.8	0.0	2.4	2	0	0	2	2	2	1	Virulence-associated	protein	E
RuvB_N	PF05496.12	gi|384433743|ref|YP_005643101.1|	-	0.0052	16.5	0.1	0.92	9.2	0.0	2.5	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
DUF87	PF01935.17	gi|384433743|ref|YP_005643101.1|	-	0.0074	16.4	3.1	3.6	7.6	0.0	3.3	3	0	0	3	3	3	0	Helicase	HerA,	central	domain
MMR_HSR1	PF01926.23	gi|384433743|ref|YP_005643101.1|	-	0.011	15.8	2.6	4	7.5	0.1	3.4	3	1	0	3	3	3	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.6	gi|384433743|ref|YP_005643101.1|	-	0.011	14.4	0.3	15	4.0	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
MobB	PF03205.14	gi|384433743|ref|YP_005643101.1|	-	0.018	14.9	0.5	4.5	7.2	0.0	2.4	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
dNK	PF01712.19	gi|384433743|ref|YP_005643101.1|	-	0.019	14.8	1.8	1.7	8.4	0.2	3.5	3	1	1	4	4	3	0	Deoxynucleoside	kinase
CLP1_P	PF16575.5	gi|384433743|ref|YP_005643101.1|	-	0.024	14.5	0.1	2.2	8.0	0.0	2.8	3	0	0	3	3	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_30	PF13604.6	gi|384433743|ref|YP_005643101.1|	-	0.027	14.2	1.3	13	5.5	0.0	3.3	3	1	0	3	3	3	0	AAA	domain
Zeta_toxin	PF06414.12	gi|384433743|ref|YP_005643101.1|	-	0.041	13.2	0.0	2.8	7.2	0.0	3.1	3	0	0	3	3	3	0	Zeta	toxin
AAA_29	PF13555.6	gi|384433743|ref|YP_005643101.1|	-	0.054	13.3	0.9	6.5	6.6	0.1	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|384433743|ref|YP_005643101.1|	-	0.085	12.5	11.9	6.9	6.3	0.1	3.8	2	2	1	4	4	4	0	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|384433743|ref|YP_005643101.1|	-	0.094	11.9	7.4	2.1	7.4	0.2	3.4	3	1	1	4	4	4	0	NB-ARC	domain
Fer4_8	PF13183.6	gi|384433743|ref|YP_005643101.1|	-	0.097	13.1	0.1	0.097	13.1	0.1	1.9	2	0	0	2	2	1	0	4Fe-4S	dicluster	domain
PRK	PF00485.18	gi|384433743|ref|YP_005643101.1|	-	0.1	12.3	0.0	3.9	7.2	0.0	2.5	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
TsaE	PF02367.17	gi|384433743|ref|YP_005643101.1|	-	0.11	12.5	1.1	2.3	8.2	0.1	2.7	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_28	PF13521.6	gi|384433743|ref|YP_005643101.1|	-	0.19	11.9	1.2	32	4.7	0.1	3.2	4	0	0	4	4	2	0	AAA	domain
Roc	PF08477.13	gi|384433743|ref|YP_005643101.1|	-	0.19	11.9	1.5	51	4.1	0.0	3.3	2	1	1	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_25	PF13481.6	gi|384433743|ref|YP_005643101.1|	-	0.25	10.9	0.3	4.8	6.7	0.0	2.8	3	1	0	3	3	3	0	AAA	domain
SRP54	PF00448.22	gi|384433743|ref|YP_005643101.1|	-	0.3	10.7	3.1	13	5.3	0.3	3.0	3	0	0	3	3	2	0	SRP54-type	protein,	GTPase	domain
Fer4_17	PF13534.6	gi|384433743|ref|YP_005643101.1|	-	0.54	10.9	7.1	2	9.1	7.2	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_19	PF13245.6	gi|384433743|ref|YP_005643101.1|	-	0.69	10.2	4.5	25	5.2	0.3	3.2	3	1	0	3	3	3	0	AAA	domain
Fer4_4	PF12800.7	gi|384433743|ref|YP_005643101.1|	-	0.76	10.4	13.5	0.13	12.9	4.0	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
AAA_17	PF13207.6	gi|384433743|ref|YP_005643101.1|	-	0.99	9.8	3.2	63	4.0	0.1	3.9	4	1	1	5	5	3	0	AAA	domain
NTPase_1	PF03266.15	gi|384433743|ref|YP_005643101.1|	-	1.3	8.9	6.6	13	5.6	0.1	3.7	4	0	0	4	4	4	0	NTPase
PduV-EutP	PF10662.9	gi|384433743|ref|YP_005643101.1|	-	1.3	8.8	3.4	46	3.8	0.1	3.7	4	0	0	4	4	4	0	Ethanolamine	utilisation	-	propanediol	utilisation
Fer4_3	PF12798.7	gi|384433743|ref|YP_005643101.1|	-	2.7	9.1	14.3	0.31	12.1	3.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|384433743|ref|YP_005643101.1|	-	5	7.7	7.0	0.39	11.3	1.6	1.9	2	0	0	2	2	1	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Sugar_tr	PF00083.24	gi|384433744|ref|YP_005643102.1|	-	2e-42	145.6	17.6	2.6e-42	145.2	17.6	1.1	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384433744|ref|YP_005643102.1|	-	4.3e-27	94.9	45.2	1.1e-24	87.0	18.4	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TFIIS_C	PF01096.18	gi|384433745|ref|YP_005643103.1|	-	9.6e-22	76.6	14.7	4.3e-21	74.5	2.1	3.2	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|384433745|ref|YP_005643103.1|	-	1.9e-10	40.4	3.8	1.9e-10	40.4	3.8	3.0	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|384433745|ref|YP_005643103.1|	-	5.2e-07	29.5	9.2	0.0016	18.4	0.8	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
DUF2387	PF09526.10	gi|384433745|ref|YP_005643103.1|	-	2.5e-05	24.3	8.0	0.0044	17.1	2.1	2.3	1	1	1	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
Zn-ribbon_8	PF09723.10	gi|384433745|ref|YP_005643103.1|	-	0.0003	20.9	12.7	0.42	10.8	0.1	4.3	3	1	0	4	4	4	1	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|384433745|ref|YP_005643103.1|	-	0.00041	19.6	1.5	0.00041	19.6	1.5	2.7	2	1	0	2	2	2	1	Transcription	factor	zinc-finger
Desulfoferrod_N	PF06397.12	gi|384433745|ref|YP_005643103.1|	-	0.00047	19.7	3.3	0.19	11.4	0.4	2.5	2	0	0	2	2	2	2	Desulfoferrodoxin,	N-terminal	domain
TF_Zn_Ribbon	PF08271.12	gi|384433745|ref|YP_005643103.1|	-	0.00074	19.0	9.1	0.26	10.9	0.2	3.3	3	2	0	3	3	3	2	TFIIB	zinc-binding
DZR	PF12773.7	gi|384433745|ref|YP_005643103.1|	-	0.0021	18.0	10.8	0.0066	16.4	1.1	2.9	2	1	1	3	3	3	1	Double	zinc	ribbon
Rep_fac-A_C	PF08646.10	gi|384433745|ref|YP_005643103.1|	-	0.0035	17.1	1.7	0.0035	17.1	1.7	2.0	1	1	0	2	2	2	1	Replication	factor-A	C	terminal	domain
Zn_ribbon_recom	PF13408.6	gi|384433745|ref|YP_005643103.1|	-	0.0056	17.2	1.3	0.0056	17.2	1.3	2.3	2	1	0	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
eIF-5_eIF-2B	PF01873.17	gi|384433745|ref|YP_005643103.1|	-	0.01	15.7	6.3	0.11	12.3	0.2	2.4	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
C1_1	PF00130.22	gi|384433745|ref|YP_005643103.1|	-	0.026	14.4	6.5	0.06	13.2	1.3	2.8	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DNA_ligase_ZBD	PF03119.16	gi|384433745|ref|YP_005643103.1|	-	0.03	14.3	4.9	0.049	13.7	0.3	2.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_2	PF13240.6	gi|384433745|ref|YP_005643103.1|	-	0.034	13.9	19.2	1.5	8.7	0.6	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
IBR	PF01485.21	gi|384433745|ref|YP_005643103.1|	-	0.035	14.3	3.1	0.035	14.3	3.1	2.9	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_10	PF10058.9	gi|384433745|ref|YP_005643103.1|	-	0.039	13.7	12.8	0.37	10.6	3.7	2.9	2	2	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn_Tnp_IS1	PF03811.13	gi|384433745|ref|YP_005643103.1|	-	0.07	12.9	9.4	1.9	8.3	2.1	3.2	3	1	0	3	3	3	0	InsA	N-terminal	domain
zf-Mss51	PF13824.6	gi|384433745|ref|YP_005643103.1|	-	0.086	13.0	6.9	1.9	8.7	0.3	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zinc-ribbons_6	PF07191.12	gi|384433745|ref|YP_005643103.1|	-	0.1	12.6	1.1	0.1	12.6	1.1	2.8	2	1	0	2	2	2	0	zinc-ribbons
zf-UBP	PF02148.19	gi|384433745|ref|YP_005643103.1|	-	0.11	12.8	2.9	2.1	8.7	0.3	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
Zn_Tnp_IS91	PF14319.6	gi|384433745|ref|YP_005643103.1|	-	0.12	12.4	12.1	0.8	9.8	0.2	3.9	2	2	2	4	4	4	0	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433745|ref|YP_005643103.1|	-	0.12	12.3	12.6	0.31	11.0	2.9	2.8	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Nudix_N_2	PF14803.6	gi|384433745|ref|YP_005643103.1|	-	0.22	11.5	11.5	0.68	9.9	3.3	3.5	3	1	0	3	3	3	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|384433745|ref|YP_005643103.1|	-	0.37	10.4	12.5	4.2	7.1	0.2	4.2	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
UCH_1	PF13423.6	gi|384433745|ref|YP_005643103.1|	-	0.43	10.1	2.6	0.48	10.0	2.6	1.3	1	0	0	1	1	1	0	Ubiquitin	carboxyl-terminal	hydrolase
zf-ribbon_3	PF13248.6	gi|384433745|ref|YP_005643103.1|	-	0.62	9.6	16.4	3.6	7.1	0.2	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|384433745|ref|YP_005643103.1|	-	0.76	10.3	16.8	3.1	8.4	0.6	4.2	4	0	0	4	4	4	0	Zinc-finger	double	domain
PhnA_Zn_Ribbon	PF08274.12	gi|384433745|ref|YP_005643103.1|	-	1	9.4	9.6	6.7	6.8	1.7	3.5	2	2	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-ACC	PF17848.1	gi|384433745|ref|YP_005643103.1|	-	1	9.5	15.1	7.3	6.8	0.2	4.3	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-C4_Topoisom	PF01396.19	gi|384433745|ref|YP_005643103.1|	-	1.3	8.9	16.8	0.38	10.6	5.5	3.4	3	1	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
HalOD2	PF18547.1	gi|384433745|ref|YP_005643103.1|	-	1.5	8.7	11.1	1.6	8.7	0.0	3.0	4	0	0	4	4	3	0	Halobacterial	output	domain	2
RNHCP	PF12647.7	gi|384433745|ref|YP_005643103.1|	-	1.8	8.6	6.7	7.5	6.6	1.4	2.9	3	1	0	3	3	2	0	RNHCP	domain
zinc_ribbon_4	PF13717.6	gi|384433745|ref|YP_005643103.1|	-	1.8	8.6	21.3	0.59	10.1	0.8	4.5	3	2	0	3	3	3	0	zinc-ribbon	domain
Rdx	PF10262.9	gi|384433745|ref|YP_005643103.1|	-	1.8	8.8	8.3	8.2	6.7	0.0	3.4	3	1	1	4	4	4	0	Rdx	family
Zn_ribbon_SprT	PF17283.2	gi|384433745|ref|YP_005643103.1|	-	1.9	8.5	17.1	1.4	8.8	4.1	3.5	2	2	0	2	2	2	0	SprT-like	zinc	ribbon	domain
GFA	PF04828.14	gi|384433745|ref|YP_005643103.1|	-	1.9	8.9	8.9	15	6.0	0.3	3.1	1	1	2	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-piccolo	PF05715.13	gi|384433745|ref|YP_005643103.1|	-	4	7.7	11.0	3.3	7.9	2.2	2.6	2	1	0	2	2	2	0	Piccolo	Zn-finger
zf-Dof	PF02701.15	gi|384433745|ref|YP_005643103.1|	-	4.5	7.5	10.8	2.9	8.1	2.3	2.9	3	0	0	3	3	3	0	Dof	domain,	zinc	finger
DUF35_N	PF12172.8	gi|384433745|ref|YP_005643103.1|	-	8.1	6.4	11.4	13	5.8	0.1	3.9	4	0	0	4	4	4	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF5411	PF17424.2	gi|384433746|ref|YP_005643104.1|	-	0.0062	16.5	0.2	0.0063	16.5	0.2	1.2	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5411)
RNA_pol_L_2	PF13656.6	gi|384433747|ref|YP_005643105.1|	-	5.2e-22	77.4	0.0	6.4e-22	77.1	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|384433747|ref|YP_005643105.1|	-	3e-10	39.4	0.0	4.1e-10	38.9	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
ECR1_N	PF14382.6	gi|384433748|ref|YP_005643106.1|	-	1.6e-09	37.4	0.0	3e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
S1	PF00575.23	gi|384433748|ref|YP_005643106.1|	-	4.2e-05	23.8	0.5	0.00026	21.2	0.5	2.0	1	1	0	1	1	1	1	S1	RNA	binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433748|ref|YP_005643106.1|	-	0.0061	16.5	0.9	0.01	15.7	0.9	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Mu-like_Com	PF10122.9	gi|384433748|ref|YP_005643106.1|	-	0.0063	15.9	0.5	0.012	15.0	0.5	1.5	1	0	0	1	1	1	1	Mu-like	prophage	protein	Com
HypA	PF01155.19	gi|384433748|ref|YP_005643106.1|	-	0.04	13.9	0.5	0.084	12.9	0.5	1.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3977	PF13122.6	gi|384433748|ref|YP_005643106.1|	-	0.054	13.7	0.2	0.79	10.0	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3977)
TF_Zn_Ribbon	PF08271.12	gi|384433748|ref|YP_005643106.1|	-	0.3	10.6	1.2	2.9	7.5	1.2	2.3	1	1	0	1	1	1	0	TFIIB	zinc-binding
zn-ribbon_14	PF16503.5	gi|384433748|ref|YP_005643106.1|	-	0.46	10.0	5.1	2.4	7.8	0.6	2.3	2	0	0	2	2	2	0	Zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|384433748|ref|YP_005643106.1|	-	0.57	10.2	4.8	8.7	6.4	0.4	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.16	gi|384433748|ref|YP_005643106.1|	-	1	9.3	3.7	11	6.0	4.3	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Diphthamide_syn	PF01866.17	gi|384433749|ref|YP_005643107.1|	-	2.8e-78	263.4	0.0	3.3e-78	263.2	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
TraT	PF05818.12	gi|384433749|ref|YP_005643107.1|	-	0.00052	19.8	0.0	0.0024	17.6	0.0	1.9	2	0	0	2	2	2	1	Enterobacterial	TraT	complement	resistance	protein
UPF0180	PF03698.13	gi|384433749|ref|YP_005643107.1|	-	0.0069	16.5	0.0	0.87	9.8	0.0	2.7	2	1	0	2	2	2	1	Uncharacterised	protein	family	(UPF0180)
Abhydrolase_5	PF12695.7	gi|384433749|ref|YP_005643107.1|	-	0.12	12.2	0.0	1.6	8.5	0.0	2.5	2	1	0	2	2	2	0	Alpha/beta	hydrolase	family
Ribosomal_L16	PF00252.18	gi|384433750|ref|YP_005643108.1|	-	2.3e-30	105.3	0.1	2.7e-30	105.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
AgI_II_C2	PF17998.1	gi|384433751|ref|YP_005643109.1|	-	0.14	12.4	0.1	0.25	11.6	0.0	1.4	1	1	0	1	1	1	0	Cell	surface	antigen	I/II	C2	terminal	domain
LPG_synthase_TM	PF03706.13	gi|384433753|ref|YP_005643111.1|	-	1.2e-07	31.6	13.3	1.8e-07	31.0	13.3	1.3	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
ThiF	PF00899.21	gi|384433754|ref|YP_005643112.1|	-	1.5e-49	168.5	0.1	2e-49	168.2	0.1	1.1	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|384433754|ref|YP_005643112.1|	-	0.013	15.7	1.5	0.13	12.6	1.5	2.1	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384433754|ref|YP_005643112.1|	-	0.014	14.8	0.0	0.027	13.8	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|384433754|ref|YP_005643112.1|	-	0.018	15.3	0.1	0.038	14.2	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Shikimate_DH	PF01488.20	gi|384433754|ref|YP_005643112.1|	-	0.02	15.0	0.4	0.035	14.2	0.4	1.5	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.16	gi|384433754|ref|YP_005643112.1|	-	0.07	12.8	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
PglD_N	PF17836.1	gi|384433754|ref|YP_005643112.1|	-	0.11	13.1	1.1	0.57	10.9	0.1	2.6	2	1	1	3	3	3	0	PglD	N-terminal	domain
ELFV_dehydrog	PF00208.21	gi|384433754|ref|YP_005643112.1|	-	0.16	11.7	0.0	0.23	11.2	0.0	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
FAD_binding_3	PF01494.19	gi|384433754|ref|YP_005643112.1|	-	0.22	10.7	0.1	0.28	10.4	0.1	1.1	1	0	0	1	1	1	0	FAD	binding	domain
Transketolase_N	PF00456.21	gi|384433755|ref|YP_005643113.1|	-	2.3e-37	128.7	0.0	4.1e-37	127.9	0.0	1.4	1	1	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.6	gi|384433755|ref|YP_005643113.1|	-	2.2e-08	33.6	0.1	3.4e-06	26.5	0.2	2.1	1	1	1	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|384433755|ref|YP_005643113.1|	-	1.2e-07	31.6	0.8	3.1e-06	27.0	0.8	2.2	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.20	gi|384433755|ref|YP_005643113.1|	-	1.6e-07	30.5	0.0	2.7e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Dehydrogenase	E1	component
XFP_N	PF09364.10	gi|384433755|ref|YP_005643113.1|	-	0.0064	15.3	0.1	0.0085	14.9	0.1	1.2	1	0	0	1	1	1	1	XFP	N-terminal	domain
Transket_pyr	PF02779.24	gi|384433756|ref|YP_005643114.1|	-	1.2e-36	126.0	0.0	1.8e-36	125.5	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|384433756|ref|YP_005643114.1|	-	7e-28	97.0	0.1	2.2e-27	95.4	0.0	1.9	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|384433756|ref|YP_005643114.1|	-	0.00039	20.7	0.0	0.00082	19.6	0.0	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Imm75	PF15660.6	gi|384433756|ref|YP_005643114.1|	-	0.097	12.9	0.1	5.7	7.3	0.0	2.4	2	0	0	2	2	2	0	Putative	Immunity	protein	75
PDH	PF02153.17	gi|384433757|ref|YP_005643115.1|	-	1.6e-22	79.7	0.1	8.7e-22	77.4	0.0	1.9	2	0	0	2	2	2	1	Prephenate	dehydrogenase
CM_2	PF01817.21	gi|384433757|ref|YP_005643115.1|	-	9e-16	58.0	0.3	2e-15	56.9	0.3	1.6	1	0	0	1	1	1	1	Chorismate	mutase	type	II
F420_oxidored	PF03807.17	gi|384433757|ref|YP_005643115.1|	-	1.2e-12	48.3	0.1	3e-12	47.0	0.1	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|384433757|ref|YP_005643115.1|	-	1.6e-07	31.5	0.1	6.3e-07	29.5	0.0	1.9	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.15	gi|384433757|ref|YP_005643115.1|	-	0.00052	20.2	0.0	0.0019	18.4	0.0	1.9	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|384433757|ref|YP_005643115.1|	-	0.0022	17.9	0.0	1.5	8.7	0.0	2.4	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|384433757|ref|YP_005643115.1|	-	0.0063	16.1	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|384433757|ref|YP_005643115.1|	-	0.015	14.7	0.0	0.03	13.7	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
PglD_N	PF17836.1	gi|384433757|ref|YP_005643115.1|	-	0.019	15.6	0.2	0.083	13.5	0.0	2.2	2	0	0	2	2	2	0	PglD	N-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|384433757|ref|YP_005643115.1|	-	0.16	12.3	0.1	0.63	10.3	0.0	2.0	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
Med4	PF10018.9	gi|384433757|ref|YP_005643115.1|	-	1.8	8.2	4.2	0.39	10.4	0.7	1.6	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DAHP_synth_1	PF00793.20	gi|384433758|ref|YP_005643116.1|	-	1.7e-73	246.8	0.0	2.2e-73	246.5	0.0	1.1	1	0	0	1	1	1	1	DAHP	synthetase	I	family
NeuB	PF03102.14	gi|384433758|ref|YP_005643116.1|	-	2.4e-10	40.3	0.0	5.3e-05	22.8	0.0	2.9	2	1	1	3	3	3	2	NeuB	family
GFO_IDH_MocA	PF01408.22	gi|384433758|ref|YP_005643116.1|	-	0.097	13.5	0.0	2.7	8.8	0.0	2.3	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DHQ_synthase	PF01761.20	gi|384433759|ref|YP_005643117.1|	-	1.9e-92	309.2	0.0	2.3e-92	308.9	0.0	1.1	1	0	0	1	1	1	1	3-dehydroquinate	synthase
Fe-ADH	PF00465.19	gi|384433759|ref|YP_005643117.1|	-	7.7e-09	34.8	0.0	9.5e-07	27.9	0.0	2.2	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|384433759|ref|YP_005643117.1|	-	1.7e-06	27.9	0.0	3.3e-06	27.0	0.0	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Shikimate_dh_N	PF08501.11	gi|384433760|ref|YP_005643118.1|	-	4.9e-23	81.2	0.0	1.6e-22	79.6	0.0	1.9	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.20	gi|384433760|ref|YP_005643118.1|	-	1.6e-08	34.7	0.0	3.6e-08	33.6	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
SDH_C	PF18317.1	gi|384433760|ref|YP_005643118.1|	-	0.00019	21.1	0.0	0.00038	20.2	0.0	1.5	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
DUF1827	PF08860.10	gi|384433760|ref|YP_005643118.1|	-	0.039	14.2	4.4	3.2	8.1	0.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1827)
Sacchrp_dh_NADP	PF03435.18	gi|384433760|ref|YP_005643118.1|	-	0.046	14.0	0.1	0.12	12.6	0.1	1.7	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
UPF0728	PF15092.6	gi|384433760|ref|YP_005643118.1|	-	0.062	13.1	0.0	3.7	7.4	0.0	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0728
ThiF	PF00899.21	gi|384433760|ref|YP_005643118.1|	-	0.1	12.0	0.0	0.21	10.9	0.0	1.5	1	0	0	1	1	1	0	ThiF	family
LAGLIDADG_3	PF14528.6	gi|384433760|ref|YP_005643118.1|	-	0.11	12.8	0.2	0.3	11.4	0.0	1.8	2	0	0	2	2	2	0	LAGLIDADG-like	domain
Chorismate_synt	PF01264.21	gi|384433761|ref|YP_005643119.1|	-	3.3e-124	413.9	0.0	3.8e-124	413.7	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
EH_Signature	PF15611.6	gi|384433761|ref|YP_005643119.1|	-	0.07	12.5	0.0	0.082	12.3	0.0	1.2	1	0	0	1	1	1	0	EH_Signature	domain
GHMP_kinases_N	PF00288.26	gi|384433762|ref|YP_005643120.1|	-	1.9e-09	37.6	0.3	5.5e-09	36.1	0.3	1.8	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|384433762|ref|YP_005643120.1|	-	0.0002	21.6	0.1	0.00059	20.1	0.0	1.8	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
EPSP_synthase	PF00275.20	gi|384433763|ref|YP_005643121.1|	-	2.3e-65	220.9	0.0	2.8e-65	220.6	0.0	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
DHquinase_I	PF01487.15	gi|384433764|ref|YP_005643122.1|	-	4.3e-13	50.0	0.0	7.1e-13	49.3	0.0	1.3	1	1	0	1	1	1	1	Type	I	3-dehydroquinase
Rieske	PF00355.26	gi|384433765|ref|YP_005643123.1|	-	6.5e-12	45.2	0.0	8.2e-12	44.9	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|384433765|ref|YP_005643123.1|	-	1.5e-05	24.8	0.0	1.8e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Helicase_C_2	PF13307.6	gi|384433767|ref|YP_005643125.1|	-	3.4e-25	89.2	0.1	1.2e-24	87.4	0.0	1.9	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|384433767|ref|YP_005643125.1|	-	1.2e-20	73.9	0.1	3.6e-20	72.3	0.1	1.9	1	1	1	2	2	2	1	DEAD_2
ResIII	PF04851.15	gi|384433767|ref|YP_005643125.1|	-	6.3e-08	32.8	3.2	2.8e-07	30.7	0.2	2.9	1	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|384433767|ref|YP_005643125.1|	-	4e-05	23.5	0.6	0.0017	18.1	0.2	3.2	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
PhoH	PF02562.16	gi|384433767|ref|YP_005643125.1|	-	4.3e-05	23.1	1.3	0.0031	17.0	0.0	3.4	2	1	1	3	3	3	1	PhoH-like	protein
HBB	PF06777.11	gi|384433767|ref|YP_005643125.1|	-	0.0084	15.8	0.1	0.024	14.3	0.0	1.8	1	1	0	1	1	1	1	Helical	and	beta-bridge	domain
DpaA_N	PF16924.5	gi|384433767|ref|YP_005643125.1|	-	0.015	15.4	0.0	0.32	11.1	0.0	2.6	2	0	0	2	2	2	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
AAA_34	PF13872.6	gi|384433767|ref|YP_005643125.1|	-	0.039	12.8	0.0	0.065	12.1	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
T2SSE	PF00437.20	gi|384433767|ref|YP_005643125.1|	-	0.095	11.7	0.2	0.29	10.2	0.0	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_22	PF13401.6	gi|384433767|ref|YP_005643125.1|	-	0.15	12.4	0.2	12	6.2	0.1	2.6	2	0	0	2	2	2	0	AAA	domain
SNF2_N	PF00176.23	gi|384433767|ref|YP_005643125.1|	-	0.15	10.7	0.0	0.27	9.9	0.0	1.4	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
AAA_25	PF13481.6	gi|384433767|ref|YP_005643125.1|	-	0.2	11.2	0.0	0.43	10.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Thioredoxin_3	PF13192.6	gi|384433768|ref|YP_005643126.1|	-	2.5e-09	37.0	0.0	5.5e-09	36.0	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.24	gi|384433768|ref|YP_005643126.1|	-	0.00083	19.5	0.3	0.0035	17.5	0.0	2.2	2	1	0	2	2	2	1	Glutaredoxin
Tox-PL-2	PF15643.6	gi|384433768|ref|YP_005643126.1|	-	0.044	13.9	0.3	0.16	12.1	0.1	1.9	2	0	0	2	2	2	0	Papain	fold	toxin	2
Thioredoxin_4	PF13462.6	gi|384433768|ref|YP_005643126.1|	-	0.048	13.8	0.0	0.16	12.2	0.0	1.8	2	0	0	2	2	2	0	Thioredoxin
SesA	PF17107.5	gi|384433768|ref|YP_005643126.1|	-	0.086	13.0	0.2	13	6.0	0.0	2.3	2	0	0	2	2	2	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
TetR_C_26	PF17934.1	gi|384433768|ref|YP_005643126.1|	-	0.15	12.4	1.7	0.97	9.8	0.0	2.7	3	0	0	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
Thioredoxin_2	PF13098.6	gi|384433768|ref|YP_005643126.1|	-	0.26	11.7	1.3	6.3	7.3	0.0	2.6	2	1	1	3	3	3	0	Thioredoxin-like	domain
TusA	PF01206.17	gi|384433769|ref|YP_005643127.1|	-	4.3e-05	23.3	0.0	5.3e-05	23.0	0.0	1.4	1	1	0	1	1	1	1	Sulfurtransferase	TusA
PCRF	PF03462.18	gi|384433770|ref|YP_005643128.1|	-	0.77	9.6	3.2	3.5	7.4	0.1	2.9	2	2	1	3	3	3	0	PCRF	domain
Prefoldin	PF02996.17	gi|384433770|ref|YP_005643128.1|	-	1.3	9.0	10.1	10	6.0	0.5	4.7	4	1	1	5	5	5	0	Prefoldin	subunit
Sod_Fe_C	PF02777.18	gi|384433771|ref|YP_005643129.1|	-	2.2e-33	114.5	1.0	3.2e-33	113.9	1.0	1.2	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.22	gi|384433771|ref|YP_005643129.1|	-	5.5e-29	100.5	0.1	5.5e-29	100.5	0.1	2.2	3	0	0	3	3	3	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
NTP_transferase	PF00483.23	gi|384433772|ref|YP_005643130.1|	-	8.9e-34	117.2	0.0	1.1e-33	116.8	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|384433772|ref|YP_005643130.1|	-	7.4e-11	41.3	4.5	7.5e-06	25.5	0.6	3.4	1	1	2	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|384433772|ref|YP_005643130.1|	-	2e-08	34.7	0.0	2.7e-08	34.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Fucokinase	PF07959.12	gi|384433772|ref|YP_005643130.1|	-	0.00057	18.9	0.0	0.0012	17.9	0.0	1.6	2	0	0	2	2	2	1	L-fucokinase
Hexapep_2	PF14602.6	gi|384433772|ref|YP_005643130.1|	-	0.091	12.5	0.2	0.091	12.5	0.2	2.2	3	0	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
DUF364	PF04016.12	gi|384433773|ref|YP_005643131.1|	-	1.1e-27	96.5	0.0	1.4e-27	96.0	0.0	1.1	1	0	0	1	1	1	1	Putative	heavy-metal	chelation
DUF4213	PF13938.6	gi|384433773|ref|YP_005643131.1|	-	2.5e-11	43.6	0.0	4.4e-11	42.9	0.0	1.3	1	0	0	1	1	1	1	Putative	heavy-metal	chelation
Glyco_hydro_88	PF07470.13	gi|384433774|ref|YP_005643132.1|	-	0.00076	18.6	0.0	0.0061	15.7	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	Hydrolase	Family	88
Thioredoxin_2	PF13098.6	gi|384433774|ref|YP_005643132.1|	-	0.0056	17.1	1.2	0.065	13.7	0.1	2.8	2	1	1	3	3	3	1	Thioredoxin-like	domain
C5-epim_C	PF06662.13	gi|384433774|ref|YP_005643132.1|	-	0.0078	15.7	0.6	17	4.9	0.0	3.4	2	1	2	4	4	4	2	D-glucuronyl	C5-epimerase	C-terminus
Glyco_hydro_127	PF07944.12	gi|384433774|ref|YP_005643132.1|	-	0.02	13.4	0.0	0.034	12.6	0.0	1.2	1	0	0	1	1	1	0	Beta-L-arabinofuranosidase,	GH127
Thioredoxin_7	PF13899.6	gi|384433774|ref|YP_005643132.1|	-	0.024	14.8	0.0	0.055	13.7	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin-like
Glyco_hydro_76	PF03663.14	gi|384433774|ref|YP_005643132.1|	-	0.079	12.5	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	76
Thioredoxin_8	PF13905.6	gi|384433774|ref|YP_005643132.1|	-	0.086	13.2	0.2	0.32	11.4	0.1	2.1	2	0	0	2	2	2	0	Thioredoxin-like
DUF2175	PF09943.9	gi|384433775|ref|YP_005643133.1|	-	2.1e-28	98.5	2.3	2.4e-28	98.3	2.3	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
Ca_bind_SSO6904	PF18249.1	gi|384433775|ref|YP_005643133.1|	-	0.012	16.0	1.2	0.049	14.0	0.5	1.9	1	1	1	2	2	2	0	Calcium	binding	protein	SSO6904
V-SNARE	PF05008.15	gi|384433775|ref|YP_005643133.1|	-	0.026	14.9	4.8	0.099	13.0	4.8	1.8	1	1	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
GlcNAc-1_reg	PF18440.1	gi|384433775|ref|YP_005643133.1|	-	0.087	13.1	2.0	0.76	10.1	1.1	2.0	1	1	1	2	2	2	0	Putative	GlcNAc-1	phosphotransferase	regulatory	domain
RapH_N	PF18801.1	gi|384433775|ref|YP_005643133.1|	-	0.17	12.0	2.3	5.1	7.3	0.0	2.2	1	1	1	2	2	2	0	response	regulator	aspartate	phosphatase	H,	N	terminal
Thy1	PF02511.15	gi|384433776|ref|YP_005643134.1|	-	1.9e-65	220.2	1.2	2.4e-65	219.9	1.2	1.1	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
Oxidored_q4	PF00507.19	gi|384433777|ref|YP_005643135.1|	-	8e-11	42.0	2.7	1e-10	41.6	2.7	1.3	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
MWFE	PF15879.5	gi|384433777|ref|YP_005643135.1|	-	0.26	11.5	1.4	0.46	10.7	0.0	1.9	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	MWFE	subunit
OSTMP1	PF09777.9	gi|384433777|ref|YP_005643135.1|	-	7.4	5.9	5.1	4.2	6.7	3.5	1.4	1	1	1	2	2	2	0	Osteopetrosis-associated	transmembrane	protein	1	precursor
Complex1_30kDa	PF00329.19	gi|384433778|ref|YP_005643136.1|	-	1.5e-34	119.2	0.0	2.2e-34	118.7	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
DUF4812	PF16071.5	gi|384433778|ref|YP_005643136.1|	-	0.0068	16.2	0.0	0.017	14.9	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4812)
Complex1_49kDa	PF00346.19	gi|384433779|ref|YP_005643137.1|	-	7.3e-90	300.7	0.0	9.8e-90	300.3	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
T2SSB	PF16537.5	gi|384433779|ref|YP_005643137.1|	-	0.13	11.8	0.1	0.37	10.4	0.1	1.7	1	0	0	1	1	1	0	Type	II	secretion	system	protein	B
NiFeSe_Hases	PF00374.19	gi|384433779|ref|YP_005643137.1|	-	0.18	10.7	0.0	0.53	9.1	0.0	1.7	2	0	0	2	2	2	0	Nickel-dependent	hydrogenase
NADHdh	PF00146.21	gi|384433780|ref|YP_005643138.1|	-	1e-78	264.7	26.7	1.3e-78	264.3	26.7	1.1	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.27	gi|384433781|ref|YP_005643139.1|	-	8.6e-15	53.9	12.8	3.9e-09	35.9	3.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384433781|ref|YP_005643139.1|	-	4.4e-10	39.5	8.9	9.5e-10	38.5	8.9	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384433781|ref|YP_005643139.1|	-	5e-10	39.8	9.6	9.1e-10	39.0	9.6	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384433781|ref|YP_005643139.1|	-	8.4e-10	39.4	3.5	0.00023	22.0	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|384433781|ref|YP_005643139.1|	-	1.2e-08	34.9	8.1	3e-08	33.6	8.3	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384433781|ref|YP_005643139.1|	-	1.5e-08	34.7	7.1	2.4e-08	34.0	7.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384433781|ref|YP_005643139.1|	-	1.1e-07	31.6	14.8	0.00033	20.6	2.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384433781|ref|YP_005643139.1|	-	1.4e-06	28.1	10.6	0.0038	17.2	2.6	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|384433781|ref|YP_005643139.1|	-	1.3e-05	25.3	9.4	0.021	15.3	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|384433781|ref|YP_005643139.1|	-	8.4e-05	22.9	6.5	0.02	15.4	0.4	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384433781|ref|YP_005643139.1|	-	0.00022	21.9	16.5	0.032	15.2	4.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384433781|ref|YP_005643139.1|	-	0.00049	20.6	6.1	0.16	12.5	0.5	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|384433781|ref|YP_005643139.1|	-	0.025	15.1	9.4	0.17	12.4	1.4	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|384433781|ref|YP_005643139.1|	-	0.043	14.0	1.2	0.043	14.0	1.2	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|384433781|ref|YP_005643139.1|	-	0.29	11.9	10.8	0.99	10.2	0.5	2.7	2	1	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|384433781|ref|YP_005643139.1|	-	0.34	11.8	11.2	1.9	9.4	1.6	2.3	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|384433781|ref|YP_005643139.1|	-	0.68	10.1	3.1	1	9.5	2.1	1.7	1	1	1	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Oxidored_q3	PF00499.20	gi|384433782|ref|YP_005643140.1|	-	6.8e-14	51.8	18.5	9.7e-14	51.3	18.5	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF2759	PF10958.8	gi|384433782|ref|YP_005643140.1|	-	0.027	14.2	4.1	0.027	14.2	4.1	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2759)
Gram_pos_anchor	PF00746.21	gi|384433782|ref|YP_005643140.1|	-	2.7	8.0	0.0	2.7	8.0	0.0	4.1	4	1	1	5	5	5	0	LPXTG	cell	wall	anchor	motif
Oxidored_q2	PF00420.24	gi|384433783|ref|YP_005643141.1|	-	9.6e-12	44.5	6.2	1.4e-11	43.9	6.2	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
Tetraspanin	PF00335.20	gi|384433783|ref|YP_005643141.1|	-	0.39	10.4	5.7	0.44	10.2	5.7	1.0	1	0	0	1	1	1	0	Tetraspanin	family
Proton_antipo_M	PF00361.20	gi|384433784|ref|YP_005643142.1|	-	2e-78	263.6	68.9	2.3e-48	164.9	32.2	5.6	5	1	1	6	6	6	3	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|384433784|ref|YP_005643142.1|	-	4e-07	30.0	9.0	1.4e-05	25.0	2.0	5.9	6	1	0	6	6	6	2	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2371	PF10177.9	gi|384433784|ref|YP_005643142.1|	-	8.1	6.6	7.9	1.8	8.7	0.1	3.5	3	0	0	3	3	3	0	Uncharacterised	conserved	protein	(DUF2371)
DUF3087	PF11286.8	gi|384433784|ref|YP_005643142.1|	-	8.9	5.8	22.0	0.036	13.5	0.4	5.0	3	1	1	5	5	5	0	Protein	of	unknown	function	(DUF3087)
Proton_antipo_M	PF00361.20	gi|384433785|ref|YP_005643143.1|	-	1.5e-41	142.5	28.3	1.5e-41	142.5	28.3	2.5	2	1	0	2	2	2	1	Proton-conducting	membrane	transporter
DUF3483	PF11982.8	gi|384433785|ref|YP_005643143.1|	-	1.8	8.1	7.9	0.23	11.1	2.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3483)
Inos-1-P_synth	PF01658.17	gi|384433786|ref|YP_005643144.1|	-	3.7e-19	69.0	0.3	1.1e-18	67.5	0.0	1.8	2	0	0	2	2	2	1	Myo-inositol-1-phosphate	synthase
NAD_binding_5	PF07994.12	gi|384433786|ref|YP_005643144.1|	-	1.4e-07	31.2	0.3	3.8e-06	26.5	0.0	2.6	2	1	1	3	3	3	1	Myo-inositol-1-phosphate	synthase
MGS	PF02142.22	gi|384433786|ref|YP_005643144.1|	-	0.15	12.3	0.0	0.51	10.6	0.0	1.9	1	0	0	1	1	1	0	MGS-like	domain
ThiI	PF02568.14	gi|384433787|ref|YP_005643145.1|	-	3.5e-52	176.9	0.8	5e-51	173.1	0.1	2.1	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|384433787|ref|YP_005643145.1|	-	2.7e-22	79.4	0.7	7.1e-22	78.1	0.7	1.7	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.13	gi|384433787|ref|YP_005643145.1|	-	4e-06	26.5	0.0	0.0007	19.1	0.0	2.7	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|384433787|ref|YP_005643145.1|	-	0.0013	18.5	0.0	0.0092	15.8	0.0	2.3	2	1	0	2	2	2	1	PP-loop	family
Diphthami_syn_2	PF01902.17	gi|384433787|ref|YP_005643145.1|	-	0.018	14.5	0.0	0.16	11.4	0.0	2.3	2	0	0	2	2	2	0	Diphthamide	synthase
RNase_Zc3h12a	PF11977.8	gi|384433788|ref|YP_005643146.1|	-	0.033	14.0	0.3	0.041	13.6	0.3	1.1	1	0	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
DivIC	PF04977.15	gi|384433789|ref|YP_005643147.1|	-	0.00043	20.0	2.0	0.00093	18.9	2.0	1.5	1	0	0	1	1	1	1	Septum	formation	initiator
Sec34	PF04136.15	gi|384433789|ref|YP_005643147.1|	-	0.037	13.9	1.0	0.066	13.1	1.0	1.3	1	0	0	1	1	1	0	Sec34-like	family
MFS_1	PF07690.16	gi|384433790|ref|YP_005643148.1|	-	0.0025	16.8	13.1	0.0025	16.8	13.1	2.5	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
Kinocilin	PF15033.6	gi|384433790|ref|YP_005643148.1|	-	0.096	12.3	0.2	0.096	12.3	0.2	3.4	3	1	0	3	3	3	0	Kinocilin	protein
DUF5616	PF18481.1	gi|384433791|ref|YP_005643149.1|	-	1e-21	77.7	1.7	1.6e-21	77.1	1.7	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5616)
DUF434	PF04256.12	gi|384433791|ref|YP_005643149.1|	-	1.4e-19	69.5	1.0	2.7e-19	68.6	1.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF434)
Arg_repressor	PF01316.21	gi|384433791|ref|YP_005643149.1|	-	0.17	11.6	1.4	0.33	10.7	0.1	2.1	2	0	0	2	2	2	0	Arginine	repressor,	DNA	binding	domain
KH_8	PF17903.1	gi|384433791|ref|YP_005643149.1|	-	0.96	9.6	4.3	12	6.1	4.0	2.5	1	1	0	1	1	1	0	Krr1	KH1	domain
tRNA-synt_2c	PF01411.19	gi|384433792|ref|YP_005643150.1|	-	1.5e-112	376.9	0.1	3.5e-112	375.7	0.0	1.6	2	0	0	2	2	2	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|384433792|ref|YP_005643150.1|	-	3.8e-14	52.5	0.5	9.5e-14	51.2	0.5	1.7	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2e	PF02091.15	gi|384433792|ref|YP_005643150.1|	-	0.019	14.2	0.1	0.039	13.2	0.1	1.4	1	0	0	1	1	1	0	Glycyl-tRNA	synthetase	alpha	subunit
Ribosomal_60s	PF00428.19	gi|384433793|ref|YP_005643151.1|	-	5e-18	65.5	13.7	5.8e-18	65.3	13.7	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
EF-hand_14	PF17959.1	gi|384433793|ref|YP_005643151.1|	-	0.0025	18.1	0.0	0.0029	17.9	0.0	1.4	1	1	0	1	1	1	1	EF-hand	domain
DUF3391	PF11871.8	gi|384433793|ref|YP_005643151.1|	-	0.2	12.2	3.5	0.28	11.7	3.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3391)
DUF3484	PF11983.8	gi|384433793|ref|YP_005643151.1|	-	0.49	11.5	4.5	0.8	10.9	4.4	1.4	1	1	0	1	1	1	0	Membrane-attachment	and	polymerisation-promoting	switch
Ribosomal_L10	PF00466.20	gi|384433794|ref|YP_005643152.1|	-	3.3e-26	91.3	2.4	1.4e-25	89.4	0.8	2.5	3	0	0	3	3	3	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|384433794|ref|YP_005643152.1|	-	2.9e-17	62.4	0.1	5.8e-17	61.5	0.1	1.5	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
Ribosomal_60s	PF00428.19	gi|384433794|ref|YP_005643152.1|	-	0.00049	20.6	3.7	0.00049	20.6	3.7	2.1	2	0	0	2	2	2	1	60s	Acidic	ribosomal	protein
Ribosomal_L1	PF00687.21	gi|384433795|ref|YP_005643153.1|	-	3.2e-34	118.5	1.8	3.9e-34	118.2	1.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L11_N	PF03946.14	gi|384433796|ref|YP_005643154.1|	-	7.4e-21	73.8	0.4	1.6e-20	72.6	0.4	1.6	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.19	gi|384433796|ref|YP_005643154.1|	-	8.8e-19	67.8	1.3	1.5e-18	67.0	1.3	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Spt5-NGN	PF03439.13	gi|384433797|ref|YP_005643155.1|	-	2.5e-21	75.3	0.1	4.9e-21	74.4	0.0	1.5	2	0	0	2	2	2	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|384433797|ref|YP_005643155.1|	-	8.1e-07	28.8	0.4	8.1e-07	28.8	0.4	1.7	2	0	0	2	2	2	1	KOW	motif
SecE	PF00584.20	gi|384433798|ref|YP_005643156.1|	-	0.025	14.5	0.7	0.031	14.2	0.7	1.3	1	1	0	1	1	1	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
SRP54	PF00448.22	gi|384433799|ref|YP_005643157.1|	-	3.6e-70	235.6	0.0	6.5e-70	234.8	0.0	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|384433799|ref|YP_005643157.1|	-	8.2e-15	54.8	2.5	8.2e-15	54.8	2.5	2.5	2	1	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
AAA_17	PF13207.6	gi|384433799|ref|YP_005643157.1|	-	3.1e-06	27.7	3.7	0.00029	21.3	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384433799|ref|YP_005643157.1|	-	2.6e-05	24.5	1.3	0.00012	22.4	0.0	2.3	2	2	0	2	2	2	1	AAA	domain
RecA	PF00154.21	gi|384433799|ref|YP_005643157.1|	-	4.6e-05	23.0	0.3	0.00017	21.2	0.1	1.8	1	1	1	2	2	2	1	recA	bacterial	DNA	recombination	protein
MeaB	PF03308.16	gi|384433799|ref|YP_005643157.1|	-	0.00014	20.9	0.2	0.011	14.8	0.1	2.5	2	1	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|384433799|ref|YP_005643157.1|	-	0.00015	21.6	0.0	0.00024	20.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|384433799|ref|YP_005643157.1|	-	0.00022	21.4	0.4	0.0039	17.3	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
AAA	PF00004.29	gi|384433799|ref|YP_005643157.1|	-	0.00089	19.7	0.1	0.0035	17.7	0.0	2.0	1	1	1	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|384433799|ref|YP_005643157.1|	-	0.0009	19.2	2.2	0.41	10.5	0.1	3.0	3	0	0	3	3	3	2	NTPase
DUF445	PF04286.12	gi|384433799|ref|YP_005643157.1|	-	0.0013	18.7	4.1	0.0015	18.4	4.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
cobW	PF02492.19	gi|384433799|ref|YP_005643157.1|	-	0.0032	17.1	0.1	0.0032	17.1	0.1	2.0	3	0	0	3	3	3	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.6	gi|384433799|ref|YP_005643157.1|	-	0.0052	16.8	1.8	0.029	14.4	0.0	2.5	1	1	1	2	2	2	1	AAA	domain
KdpD	PF02702.17	gi|384433799|ref|YP_005643157.1|	-	0.012	15.1	0.0	0.031	13.8	0.0	1.7	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
RsgA_GTPase	PF03193.16	gi|384433799|ref|YP_005643157.1|	-	0.018	15.0	0.1	0.073	13.0	0.0	2.0	1	1	0	1	1	1	0	RsgA	GTPase
AAA_24	PF13479.6	gi|384433799|ref|YP_005643157.1|	-	0.021	14.5	0.1	0.021	14.5	0.1	2.7	2	2	1	3	3	3	0	AAA	domain
DUF2852	PF11014.8	gi|384433799|ref|YP_005643157.1|	-	0.027	14.6	1.8	3.2	7.9	2.1	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2852)
Zeta_toxin	PF06414.12	gi|384433799|ref|YP_005643157.1|	-	0.03	13.6	0.0	0.063	12.5	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.6	gi|384433799|ref|YP_005643157.1|	-	0.051	14.0	0.0	0.13	12.7	0.0	1.7	1	0	0	1	1	1	0	AAA	ATPase	domain
CbiA	PF01656.23	gi|384433799|ref|YP_005643157.1|	-	0.081	13.0	7.3	0.13	12.3	1.8	3.3	2	2	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MetOD2	PF18548.1	gi|384433799|ref|YP_005643157.1|	-	0.11	12.6	3.6	1.1	9.4	0.1	3.2	3	1	0	3	3	3	0	Metanogen	output	domain	2
AAA_31	PF13614.6	gi|384433799|ref|YP_005643157.1|	-	0.12	12.3	6.3	0.23	11.4	0.1	2.9	1	1	2	3	3	3	0	AAA	domain
ArsA_ATPase	PF02374.15	gi|384433799|ref|YP_005643157.1|	-	0.15	11.2	0.0	0.15	11.2	0.0	3.2	4	0	0	4	4	4	0	Anion-transporting	ATPase
MMR_HSR1	PF01926.23	gi|384433799|ref|YP_005643157.1|	-	0.39	10.8	4.2	0.2	11.8	0.3	2.4	2	2	0	2	2	2	0	50S	ribosome-binding	GTPase
Spore_II_R	PF09551.10	gi|384433799|ref|YP_005643157.1|	-	5.3	7.5	6.8	3.6	8.1	1.4	2.3	2	0	0	2	2	2	0	Stage	II	sporulation	protein	R	(spore_II_R)
Prefoldin	PF02996.17	gi|384433800|ref|YP_005643158.1|	-	2.5e-28	98.4	3.8	2.9e-28	98.2	3.8	1.1	1	0	0	1	1	1	1	Prefoldin	subunit
DUF1664	PF07889.12	gi|384433800|ref|YP_005643158.1|	-	0.0064	16.5	3.8	0.11	12.6	0.8	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1664)
Prefoldin_2	PF01920.20	gi|384433800|ref|YP_005643158.1|	-	0.0065	16.4	6.5	0.008	16.1	0.6	2.2	2	0	0	2	2	2	1	Prefoldin	subunit
Lyase_1	PF00206.20	gi|384433800|ref|YP_005643158.1|	-	0.0067	15.9	0.5	0.0078	15.6	0.5	1.2	1	0	0	1	1	1	1	Lyase
Dynactin_p22	PF07426.11	gi|384433800|ref|YP_005643158.1|	-	0.02	14.8	2.7	1.1	9.1	0.3	2.1	2	0	0	2	2	2	0	Dynactin	subunit	p22
Spc24	PF08286.11	gi|384433800|ref|YP_005643158.1|	-	0.025	14.8	2.7	0.36	11.1	1.3	2.1	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
Helo_like_N	PF17111.5	gi|384433800|ref|YP_005643158.1|	-	0.052	12.9	2.9	2.3	7.5	0.3	2.0	2	0	0	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
APG17	PF04108.12	gi|384433800|ref|YP_005643158.1|	-	0.08	12.0	4.0	0.16	11.0	0.7	2.0	2	0	0	2	2	2	0	Autophagy	protein	Apg17
eIF3_N	PF09440.10	gi|384433800|ref|YP_005643158.1|	-	0.081	13.4	2.2	7.4	7.0	0.4	2.1	2	0	0	2	2	2	0	eIF3	subunit	6	N	terminal	domain
BAR	PF03114.18	gi|384433800|ref|YP_005643158.1|	-	0.095	12.3	3.8	2	8.0	1.2	2.0	2	0	0	2	2	2	0	BAR	domain
Snf7	PF03357.21	gi|384433800|ref|YP_005643158.1|	-	0.12	12.0	7.5	2.1	7.9	0.2	2.2	2	0	0	2	2	2	0	Snf7
DUF3450	PF11932.8	gi|384433800|ref|YP_005643158.1|	-	0.12	11.6	7.9	0.33	10.2	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Sec8_exocyst	PF04048.14	gi|384433800|ref|YP_005643158.1|	-	0.14	12.0	4.7	0.15	11.9	1.0	2.1	2	0	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
DUF1759	PF03564.15	gi|384433800|ref|YP_005643158.1|	-	0.14	12.0	1.5	0.23	11.4	0.5	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1759)
Fib_alpha	PF08702.10	gi|384433800|ref|YP_005643158.1|	-	0.16	12.2	6.3	0.095	12.9	1.6	2.0	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Serine_rich	PF08824.10	gi|384433800|ref|YP_005643158.1|	-	0.23	11.5	3.2	0.37	10.8	0.7	2.0	2	0	0	2	2	2	0	Serine	rich	protein	interaction	domain
BLOC1_2	PF10046.9	gi|384433800|ref|YP_005643158.1|	-	0.26	11.6	7.5	0.94	9.8	1.1	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
V-ATPase_C	PF03223.15	gi|384433800|ref|YP_005643158.1|	-	0.8	9.0	5.2	2.5	7.4	5.2	1.7	1	1	0	1	1	1	0	V-ATPase	subunit	C
APG6_N	PF17675.1	gi|384433800|ref|YP_005643158.1|	-	2.6	8.6	7.8	20	5.7	7.8	1.9	1	1	0	1	1	1	0	Apg6	coiled-coil	region
LPP	PF04728.13	gi|384433800|ref|YP_005643158.1|	-	4.8	7.7	11.9	6.5	7.2	5.7	2.2	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
Ribosomal_L18A	PF01775.17	gi|384433801|ref|YP_005643159.1|	-	5e-11	42.7	1.3	1.7e-10	41.1	1.0	1.8	1	1	1	2	2	2	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
eIF-6	PF01912.18	gi|384433802|ref|YP_005643160.1|	-	1.9e-69	233.0	3.1	2.3e-69	232.8	3.1	1.0	1	0	0	1	1	1	1	eIF-6	family
Nicastrin	PF05450.15	gi|384433802|ref|YP_005643160.1|	-	0.034	13.6	0.1	0.05	13.0	0.1	1.2	1	0	0	1	1	1	0	Nicastrin
EFP	PF01132.20	gi|384433802|ref|YP_005643160.1|	-	0.15	12.1	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	OB	domain
Ribosomal_L31e	PF01198.19	gi|384433803|ref|YP_005643161.1|	-	7.8e-08	32.4	3.3	1e-07	32.1	3.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Ribosomal_L39	PF00832.20	gi|384433804|ref|YP_005643162.1|	-	1.6e-20	72.5	7.5	2.1e-20	72.0	7.5	1.2	1	0	0	1	1	1	1	Ribosomal	L39	protein
dsDNA_bind	PF01984.20	gi|384433805|ref|YP_005643163.1|	-	1.3e-26	93.0	15.1	1.7e-26	92.7	15.1	1.1	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
ANAPC2	PF08672.11	gi|384433805|ref|YP_005643163.1|	-	0.022	15.3	0.4	4.5	7.9	0.0	2.4	2	0	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
SurA_N	PF09312.11	gi|384433805|ref|YP_005643163.1|	-	0.031	14.3	1.2	0.031	14.3	1.2	2.0	1	1	1	2	2	2	0	SurA	N-terminal	domain
4HB_MCP_1	PF12729.7	gi|384433805|ref|YP_005643163.1|	-	0.08	12.5	6.3	0.1	12.1	6.3	1.1	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
Rsc14	PF08586.10	gi|384433805|ref|YP_005643163.1|	-	0.56	11.0	2.5	5.4	7.9	0.7	2.2	2	0	0	2	2	2	0	RSC	complex,	Rsc14/Ldb7	subunit
DNA_pol3_a_NII	PF11490.8	gi|384433805|ref|YP_005643163.1|	-	6.6	6.7	13.2	2	8.3	7.4	2.1	2	0	0	2	2	2	0	DNA	polymerase	III	polC-type	N-terminus	II
Ribosomal_S19e	PF01090.19	gi|384433806|ref|YP_005643164.1|	-	4.1e-50	169.1	0.0	4.6e-50	168.9	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
Herpes_UL92	PF03048.14	gi|384433806|ref|YP_005643164.1|	-	0.18	11.6	0.0	0.23	11.2	0.0	1.3	1	0	0	1	1	1	0	UL92	family
QRPTase_C	PF01729.19	gi|384433807|ref|YP_005643165.1|	-	1.6e-21	76.8	0.0	2.1e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NAPRTase_C	PF17956.1	gi|384433807|ref|YP_005643165.1|	-	5.7e-07	29.9	0.1	2.2e-06	28.1	0.1	1.9	1	1	0	1	1	1	1	Nicotinate	phosphoribosyltransferase	C-terminal	domain
QRPTase_N	PF02749.16	gi|384433807|ref|YP_005643165.1|	-	0.0016	18.4	0.0	0.0029	17.6	0.0	1.4	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
MazE_antitoxin	PF04014.18	gi|384433808|ref|YP_005643166.1|	-	3.3e-08	33.3	0.0	1.3e-07	31.3	0.0	2.1	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PhoU	PF01895.19	gi|384433808|ref|YP_005643166.1|	-	3.9e-07	30.4	15.3	7.2e-07	29.6	4.9	2.5	2	0	0	2	2	2	2	PhoU	domain
DUF4455	PF14643.6	gi|384433808|ref|YP_005643166.1|	-	0.0054	15.5	0.8	0.0054	15.5	0.8	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4455)
CENP-R	PF06729.12	gi|384433808|ref|YP_005643166.1|	-	0.03	14.2	0.2	0.094	12.6	0.0	1.9	1	1	1	2	2	2	0	Kinetochore	component,	CENP-R
RICTOR_M	PF14666.6	gi|384433808|ref|YP_005643166.1|	-	0.031	14.0	0.3	0.1	12.4	0.3	1.9	1	0	0	1	1	1	0	Rapamycin-insensitive	companion	of	mTOR,	middle	domain
DUF711	PF05167.12	gi|384433809|ref|YP_005643167.1|	-	2.7e-29	102.3	0.0	2.1e-27	96.1	0.0	2.8	1	1	0	2	2	2	2	Uncharacterised	ACR	(DUF711)
DrsE_2	PF13686.6	gi|384433810|ref|YP_005643168.1|	-	3e-11	43.5	0.1	2.1e-05	24.5	0.0	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|384433810|ref|YP_005643168.1|	-	2.1e-06	28.1	0.0	2.9e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Cpn10	PF00166.21	gi|384433810|ref|YP_005643168.1|	-	0.03	14.4	0.0	0.041	13.9	0.0	1.3	1	0	0	1	1	1	0	Chaperonin	10	Kd	subunit
TusA	PF01206.17	gi|384433811|ref|YP_005643169.1|	-	6.5e-09	35.5	0.1	7.5e-09	35.3	0.1	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
PALP	PF00291.25	gi|384433812|ref|YP_005643170.1|	-	1.1e-53	182.6	0.0	2.4e-53	181.4	0.0	1.5	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
RIO1	PF01163.22	gi|384433814|ref|YP_005643172.1|	-	0.0038	16.8	0.3	0.0087	15.7	0.1	1.6	1	1	1	2	2	2	1	RIO1	family
zf-ribbon_3	PF13248.6	gi|384433815|ref|YP_005643173.1|	-	0.00018	20.8	1.4	0.02	14.3	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|384433815|ref|YP_005643173.1|	-	0.0017	17.9	0.6	0.34	10.5	0.0	2.2	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|384433815|ref|YP_005643173.1|	-	0.0019	17.8	0.3	1.6	8.5	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384433815|ref|YP_005643173.1|	-	0.0027	17.2	0.4	0.24	10.9	0.0	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
Zn_ribbon_SprT	PF17283.2	gi|384433815|ref|YP_005643173.1|	-	0.0041	17.0	2.1	0.042	13.8	0.2	2.1	2	0	0	2	2	2	1	SprT-like	zinc	ribbon	domain
zinc_ribbon_10	PF10058.9	gi|384433815|ref|YP_005643173.1|	-	0.0069	16.1	2.7	0.026	14.2	2.7	1.8	1	1	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn-ribbon_8	PF09723.10	gi|384433815|ref|YP_005643173.1|	-	0.0083	16.2	1.1	0.27	11.4	0.2	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
Ogr_Delta	PF04606.12	gi|384433815|ref|YP_005643173.1|	-	0.009	16.0	3.1	0.79	9.7	0.1	2.3	1	1	1	2	2	2	2	Ogr/Delta-like	zinc	finger
DZR	PF12773.7	gi|384433815|ref|YP_005643173.1|	-	0.012	15.6	0.1	0.016	15.2	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|384433815|ref|YP_005643173.1|	-	0.014	15.4	3.0	0.13	12.2	3.9	1.9	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|384433815|ref|YP_005643173.1|	-	0.014	14.7	0.3	2.6	7.4	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-C4_Topoisom	PF01396.19	gi|384433815|ref|YP_005643173.1|	-	0.03	14.1	0.6	4.4	7.2	0.1	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
GFA	PF04828.14	gi|384433815|ref|YP_005643173.1|	-	0.055	13.8	0.6	0.45	10.9	0.0	1.9	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-HIT	PF04438.16	gi|384433815|ref|YP_005643173.1|	-	0.07	13.0	6.0	0.78	9.7	1.5	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zf-C2H2_9	PF16293.5	gi|384433815|ref|YP_005643173.1|	-	0.077	12.8	0.3	3	7.8	0.1	2.2	2	0	0	2	2	2	0	C2H2	type	zinc-finger	(1	copy)
zinc_ribbon_5	PF13719.6	gi|384433815|ref|YP_005643173.1|	-	0.079	12.7	0.3	2.7	7.8	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-LITAF-like	PF10601.9	gi|384433815|ref|YP_005643173.1|	-	0.082	13.2	1.2	3.8	7.9	0.1	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
DUF35_N	PF12172.8	gi|384433815|ref|YP_005643173.1|	-	0.082	12.8	1.3	1.4	8.9	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DNA_RNApol_7kD	PF03604.13	gi|384433815|ref|YP_005643173.1|	-	0.1	12.3	0.3	0.1	12.3	0.3	2.3	1	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
HypA	PF01155.19	gi|384433815|ref|YP_005643173.1|	-	0.12	12.4	0.1	0.14	12.1	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_9	PF14369.6	gi|384433815|ref|YP_005643173.1|	-	0.14	12.4	1.6	7.7	6.9	0.1	2.2	1	1	1	2	2	2	0	zinc-ribbon
DNA_ligase_ZBD	PF03119.16	gi|384433815|ref|YP_005643173.1|	-	0.18	11.8	2.8	0.31	11.1	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-IS66	PF13005.7	gi|384433815|ref|YP_005643173.1|	-	0.26	11.7	4.2	2.2	8.8	2.0	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ACC	PF17848.1	gi|384433815|ref|YP_005643173.1|	-	0.5	10.5	3.1	7.8	6.7	0.1	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Rubredoxin_2	PF18073.1	gi|384433815|ref|YP_005643173.1|	-	0.71	9.6	0.1	0.71	9.6	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF3797	PF12677.7	gi|384433815|ref|YP_005643173.1|	-	1.1	9.2	5.0	0.74	9.7	0.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Radical_SAM	PF04055.21	gi|384433816|ref|YP_005643174.1|	-	2.2e-26	93.2	0.1	2.8e-25	89.6	0.0	2.1	1	1	1	2	2	2	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|384433816|ref|YP_005643174.1|	-	7.4e-25	87.3	0.0	1.1e-24	86.7	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|384433816|ref|YP_005643174.1|	-	7.3e-08	32.8	0.0	2.2e-07	31.2	0.0	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384433816|ref|YP_005643174.1|	-	1.2e-05	25.5	0.0	3.3e-05	24.0	0.0	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
gp45-slide_C	PF09116.10	gi|384433816|ref|YP_005643174.1|	-	0.054	13.6	0.1	0.41	10.7	0.0	2.3	1	1	2	3	3	3	0	gp45	sliding	clamp,	C	terminal
Peptidase_M24	PF00557.24	gi|384433817|ref|YP_005643175.1|	-	1.3e-68	230.8	1.0	1.7e-68	230.5	1.0	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|384433817|ref|YP_005643175.1|	-	2.4e-12	47.6	0.0	4.1e-12	46.9	0.0	1.4	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
GTP_cyclohydroI	PF01227.22	gi|384433818|ref|YP_005643176.1|	-	1.2e-66	223.6	0.0	1.4e-66	223.4	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
FlpD	PF02662.16	gi|384433818|ref|YP_005643176.1|	-	0.11	12.5	0.1	7.1	6.6	0.0	2.4	2	0	0	2	2	2	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
MarR	PF01047.22	gi|384433819|ref|YP_005643177.1|	-	6.7e-09	35.6	0.3	1.7e-08	34.3	0.3	1.6	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|384433819|ref|YP_005643177.1|	-	1.1e-08	34.5	0.6	1.1e-08	34.5	0.6	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|384433819|ref|YP_005643177.1|	-	3.2e-06	27.0	0.1	7.3e-06	25.9	0.1	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|384433819|ref|YP_005643177.1|	-	4.7e-05	23.2	0.1	0.00011	22.0	0.1	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|384433819|ref|YP_005643177.1|	-	5.9e-05	22.9	0.5	5.9e-05	22.9	0.5	2.2	3	0	0	3	3	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|384433819|ref|YP_005643177.1|	-	0.00026	20.8	0.6	0.00052	19.8	0.6	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|384433819|ref|YP_005643177.1|	-	0.0004	20.1	0.0	0.00074	19.3	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|384433819|ref|YP_005643177.1|	-	0.00088	19.2	0.3	0.0021	18.0	0.3	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
Rrf2	PF02082.20	gi|384433819|ref|YP_005643177.1|	-	0.0045	17.3	0.3	0.0096	16.2	0.3	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|384433819|ref|YP_005643177.1|	-	0.005	17.0	0.9	0.0099	16.1	0.4	1.8	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.6	gi|384433819|ref|YP_005643177.1|	-	0.0069	16.5	0.5	0.018	15.2	0.1	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|384433819|ref|YP_005643177.1|	-	0.01	15.7	0.2	0.024	14.5	0.2	1.6	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_36	PF13730.6	gi|384433819|ref|YP_005643177.1|	-	0.018	15.0	1.9	0.055	13.4	0.2	2.7	3	1	0	3	3	3	0	Helix-turn-helix	domain
DprA_WH	PF17782.1	gi|384433819|ref|YP_005643177.1|	-	0.027	14.6	0.0	0.04	14.0	0.0	1.2	1	0	0	1	1	1	0	DprA	winged	helix	domain
Phage_rep_O	PF04492.13	gi|384433819|ref|YP_005643177.1|	-	0.029	14.9	0.1	0.094	13.3	0.1	1.8	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
HTH_20	PF12840.7	gi|384433819|ref|YP_005643177.1|	-	0.047	13.8	0.0	0.085	12.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|384433819|ref|YP_005643177.1|	-	0.067	13.4	0.2	0.16	12.1	0.1	1.6	2	0	0	2	2	1	0	B-block	binding	subunit	of	TFIIIC
HTH_3	PF01381.22	gi|384433819|ref|YP_005643177.1|	-	0.074	13.1	0.2	0.21	11.7	0.2	1.8	1	0	0	1	1	1	0	Helix-turn-helix
HTH_54	PF18607.1	gi|384433819|ref|YP_005643177.1|	-	0.078	13.1	0.0	0.25	11.4	0.0	1.8	1	0	0	1	1	1	0	ParA	helix	turn	helix	domain
HTH_39	PF14090.6	gi|384433819|ref|YP_005643177.1|	-	0.079	12.7	0.3	6.6	6.6	0.0	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|384433819|ref|YP_005643177.1|	-	0.084	12.5	0.1	0.16	11.6	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HxlR	PF01638.17	gi|384433819|ref|YP_005643177.1|	-	0.11	12.4	0.1	0.28	11.1	0.1	1.7	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
FeoC	PF09012.10	gi|384433819|ref|YP_005643177.1|	-	0.12	12.5	0.5	1	9.5	0.1	2.2	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
HTH_9	PF08221.11	gi|384433819|ref|YP_005643177.1|	-	0.13	12.4	0.3	0.38	10.9	0.1	1.8	2	0	0	2	2	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Gln-synt_C	PF00120.24	gi|384433820|ref|YP_005643178.1|	-	3.8e-133	443.7	0.0	4.5e-133	443.5	0.0	1.0	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|384433820|ref|YP_005643178.1|	-	3e-27	94.1	0.0	7.5e-27	92.9	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
ABC_tran	PF00005.27	gi|384433821|ref|YP_005643179.1|	-	1.5e-23	83.8	0.1	2.2e-23	83.3	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_29	PF13555.6	gi|384433821|ref|YP_005643179.1|	-	2e-07	30.7	0.1	3.9e-07	29.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384433821|ref|YP_005643179.1|	-	1.3e-06	29.0	2.9	1.6e-06	28.7	2.9	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|384433821|ref|YP_005643179.1|	-	5.2e-05	23.2	1.6	0.0003	20.7	1.1	2.0	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|384433821|ref|YP_005643179.1|	-	5.2e-05	23.1	0.1	7.1e-05	22.7	0.1	1.2	1	1	0	1	1	1	1	AAA	ATPase	domain
T2SSE	PF00437.20	gi|384433821|ref|YP_005643179.1|	-	6.8e-05	22.0	0.0	9.7e-05	21.6	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
SMC_N	PF02463.19	gi|384433821|ref|YP_005643179.1|	-	0.0012	18.3	0.3	0.0028	17.1	0.1	1.7	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|384433821|ref|YP_005643179.1|	-	0.0013	19.1	0.0	0.002	18.6	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|384433821|ref|YP_005643179.1|	-	0.0025	18.1	0.0	0.0041	17.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|384433821|ref|YP_005643179.1|	-	0.0031	17.2	0.0	0.0045	16.7	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|384433821|ref|YP_005643179.1|	-	0.006	16.5	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|384433821|ref|YP_005643179.1|	-	0.006	15.9	0.0	0.012	14.9	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
NB-ARC	PF00931.22	gi|384433821|ref|YP_005643179.1|	-	0.007	15.6	0.2	0.028	13.6	0.1	1.8	2	0	0	2	2	2	1	NB-ARC	domain
NTPase_1	PF03266.15	gi|384433821|ref|YP_005643179.1|	-	0.0084	16.0	0.2	0.027	14.4	0.1	1.9	2	0	0	2	2	2	1	NTPase
KAP_NTPase	PF07693.14	gi|384433821|ref|YP_005643179.1|	-	0.0099	15.1	0.0	0.0099	15.1	0.0	1.2	1	0	0	1	1	1	1	KAP	family	P-loop	domain
AAA_18	PF13238.6	gi|384433821|ref|YP_005643179.1|	-	0.013	16.0	0.4	0.028	15.0	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|384433821|ref|YP_005643179.1|	-	0.016	15.1	0.1	0.025	14.5	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
MMR_HSR1	PF01926.23	gi|384433821|ref|YP_005643179.1|	-	0.018	15.1	1.1	0.029	14.4	1.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ATPase_2	PF01637.18	gi|384433821|ref|YP_005643179.1|	-	0.022	14.7	0.3	0.057	13.3	0.1	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Dynamin_N	PF00350.23	gi|384433821|ref|YP_005643179.1|	-	0.031	14.3	1.2	0.22	11.6	0.2	2.1	2	0	0	2	2	2	0	Dynamin	family
AAA_14	PF13173.6	gi|384433821|ref|YP_005643179.1|	-	0.044	13.8	0.1	0.16	12.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|384433821|ref|YP_005643179.1|	-	0.047	12.5	0.7	0.084	11.7	0.7	1.3	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_33	PF13671.6	gi|384433821|ref|YP_005643179.1|	-	0.055	13.6	0.0	0.14	12.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
ParA	PF10609.9	gi|384433821|ref|YP_005643179.1|	-	0.092	12.2	0.1	0.22	10.9	0.1	1.6	1	1	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
AAA_24	PF13479.6	gi|384433821|ref|YP_005643179.1|	-	0.099	12.4	0.1	0.18	11.5	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|384433821|ref|YP_005643179.1|	-	0.11	12.2	0.0	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
APS_kinase	PF01583.20	gi|384433821|ref|YP_005643179.1|	-	0.14	12.0	0.3	2.1	8.2	0.1	2.3	1	1	0	2	2	2	0	Adenylylsulphate	kinase
AAA_19	PF13245.6	gi|384433821|ref|YP_005643179.1|	-	0.17	12.2	0.0	1.9	8.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Thioredoxin	PF00085.20	gi|384433822|ref|YP_005643180.1|	-	5.7e-28	96.9	0.2	8.5e-28	96.4	0.2	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|384433822|ref|YP_005643180.1|	-	5.4e-07	30.0	0.4	1.5e-05	25.4	0.4	2.3	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|384433822|ref|YP_005643180.1|	-	3.3e-06	27.3	1.4	0.0012	19.1	0.1	2.7	1	1	2	3	3	3	2	Thioredoxin-like
Thioredoxin_3	PF13192.6	gi|384433822|ref|YP_005643180.1|	-	2.9e-05	24.0	0.6	0.00011	22.1	0.1	2.1	1	1	1	2	2	2	1	Thioredoxin	domain
OST3_OST6	PF04756.13	gi|384433822|ref|YP_005643180.1|	-	0.00021	20.8	0.0	0.00023	20.6	0.0	1.2	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|384433822|ref|YP_005643180.1|	-	0.00041	20.3	1.4	0.12	12.3	0.5	2.5	1	1	2	3	3	3	2	AhpC/TSA	family
HyaE	PF07449.11	gi|384433822|ref|YP_005643180.1|	-	0.0026	17.7	0.0	0.025	14.5	0.0	2.1	2	0	0	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
Thioredoxin_7	PF13899.6	gi|384433822|ref|YP_005643180.1|	-	0.0042	17.2	0.2	0.0096	16.1	0.2	1.6	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_6	PF13848.6	gi|384433822|ref|YP_005643180.1|	-	0.027	14.4	0.1	0.073	13.0	0.1	1.8	1	1	1	2	2	2	0	Thioredoxin-like	domain
Redoxin	PF08534.10	gi|384433822|ref|YP_005643180.1|	-	0.032	14.0	1.1	0.1	12.3	0.3	2.0	1	1	1	2	2	2	0	Redoxin
Nucleolin_bd	PF16725.5	gi|384433822|ref|YP_005643180.1|	-	0.033	13.8	0.1	0.063	12.9	0.1	1.5	1	0	0	1	1	1	0	Nucleolin	binding	domain
DIM1	PF02966.16	gi|384433822|ref|YP_005643180.1|	-	0.052	13.3	0.1	0.13	12.1	0.0	1.6	1	1	1	2	2	2	0	Mitosis	protein	DIM1
AMP-binding	PF00501.28	gi|384433823|ref|YP_005643181.1|	-	1.7e-62	211.4	0.0	3.1e-62	210.6	0.0	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384433823|ref|YP_005643181.1|	-	9.2e-10	39.4	0.3	1.6e-09	38.6	0.3	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
GHMP_kinases_N	PF00288.26	gi|384433824|ref|YP_005643182.1|	-	0.0014	18.8	0.0	0.0025	18.0	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|384433824|ref|YP_005643182.1|	-	0.0023	18.3	0.0	0.0041	17.5	0.0	1.3	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Methyltr_RsmB-F	PF01189.17	gi|384433825|ref|YP_005643183.1|	-	2.6e-35	121.9	0.1	1.4e-32	113.0	0.0	2.3	1	1	1	2	2	2	2	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|384433825|ref|YP_005643183.1|	-	8.4e-06	26.2	0.0	0.0045	17.4	0.0	2.7	2	0	0	2	2	2	2	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
Methyltransf_31	PF13847.6	gi|384433825|ref|YP_005643183.1|	-	1.1e-05	25.3	0.0	1.6e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384433825|ref|YP_005643183.1|	-	0.0049	16.4	0.0	0.02	14.4	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_5	PF01795.19	gi|384433825|ref|YP_005643183.1|	-	0.0052	16.3	0.0	0.008	15.7	0.0	1.3	1	0	0	1	1	1	1	MraW	methylase	family
DUF2431	PF10354.9	gi|384433825|ref|YP_005643183.1|	-	0.0053	17.0	0.0	0.009	16.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2431)
PUA	PF01472.20	gi|384433825|ref|YP_005643183.1|	-	0.011	15.7	0.1	0.028	14.4	0.1	1.7	1	0	0	1	1	1	0	PUA	domain
DUF43	PF01861.16	gi|384433825|ref|YP_005643183.1|	-	0.016	14.4	0.6	0.38	9.9	0.0	2.3	2	0	0	2	2	2	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_25	PF13649.6	gi|384433825|ref|YP_005643183.1|	-	0.048	14.4	0.0	0.26	12.0	0.0	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|384433825|ref|YP_005643183.1|	-	0.093	12.4	0.0	0.18	11.5	0.0	1.5	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Hexapep	PF00132.24	gi|384433826|ref|YP_005643184.1|	-	3.9e-18	64.4	12.2	3.1e-06	26.7	0.0	4.4	4	1	1	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|384433826|ref|YP_005643184.1|	-	1.4e-06	27.9	9.9	0.00069	19.3	1.6	4.0	3	1	1	4	4	4	3	Hexapeptide	repeat	of	succinyl-transferase
DUF4954	PF16314.5	gi|384433826|ref|YP_005643184.1|	-	0.15	10.1	2.4	0.24	9.5	2.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
Radical_SAM	PF04055.21	gi|384433827|ref|YP_005643185.1|	-	8.8e-16	58.7	0.0	3e-14	53.7	0.0	2.1	1	1	1	2	2	2	2	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384433827|ref|YP_005643185.1|	-	6.4e-09	36.2	0.0	2.1e-08	34.5	0.0	1.8	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384433827|ref|YP_005643185.1|	-	1.7e-08	34.6	0.0	6.2e-08	32.8	0.0	2.0	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|384433827|ref|YP_005643185.1|	-	0.0065	16.9	0.0	0.027	15.0	0.0	2.0	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Phage_integrase	PF00589.22	gi|384433828|ref|YP_005643186.1|	-	9.7e-36	123.1	1.6	6.7e-35	120.4	1.1	2.1	2	0	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|384433828|ref|YP_005643186.1|	-	1.2e-12	48.1	0.0	1.1e-07	32.2	0.0	2.5	1	1	1	2	2	2	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|384433828|ref|YP_005643186.1|	-	6.5e-05	23.2	0.4	0.00062	20.0	0.0	2.6	3	1	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Integrase_1	PF12835.7	gi|384433828|ref|YP_005643186.1|	-	0.069	13.3	2.2	0.073	13.2	0.8	1.8	2	1	0	2	2	2	0	Integrase
DUF4322	PF14210.6	gi|384433829|ref|YP_005643187.1|	-	1.6e-42	143.2	0.1	4e-42	141.9	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|384433829|ref|YP_005643187.1|	-	5.6e-08	32.7	0.0	9.4e-08	32.0	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
Cob_adeno_trans	PF01923.18	gi|384433830|ref|YP_005643188.1|	-	7.7e-47	159.5	0.0	8.8e-47	159.3	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
OCD_Mu_crystall	PF02423.15	gi|384433831|ref|YP_005643189.1|	-	6.6e-44	150.1	0.1	8.6e-44	149.8	0.1	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
2-Hacid_dh_C	PF02826.19	gi|384433831|ref|YP_005643189.1|	-	0.0026	17.2	0.0	0.0044	16.4	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|384433831|ref|YP_005643189.1|	-	0.0037	17.3	0.0	0.008	16.2	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
BLM10_mid	PF16507.5	gi|384433831|ref|YP_005643189.1|	-	0.021	13.5	0.0	0.025	13.2	0.0	1.1	1	0	0	1	1	1	0	Proteasome-substrate-size	regulator,	mid	region
NTP_transferase	PF00483.23	gi|384433833|ref|YP_005643191.1|	-	3.6e-15	56.2	0.6	1.1e-13	51.3	0.6	2.1	1	1	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|384433833|ref|YP_005643191.1|	-	9.9e-15	53.6	8.3	4.5e-05	23.0	0.9	5.2	2	1	3	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|384433833|ref|YP_005643191.1|	-	2.6e-08	34.4	0.0	3e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|384433833|ref|YP_005643191.1|	-	0.011	15.5	3.4	4.6	7.1	0.0	4.3	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|384433833|ref|YP_005643191.1|	-	0.019	14.7	0.2	0.028	14.2	0.2	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|384433833|ref|YP_005643191.1|	-	0.077	12.8	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Fucokinase	PF07959.12	gi|384433833|ref|YP_005643191.1|	-	0.17	10.8	0.2	1.2	8.0	0.2	2.0	1	1	0	1	1	1	0	L-fucokinase
SIS	PF01380.22	gi|384433834|ref|YP_005643192.1|	-	1.6e-44	150.9	1.0	8e-25	87.2	0.2	2.4	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|384433834|ref|YP_005643192.1|	-	9.2e-20	71.2	0.0	1.9e-19	70.2	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|384433834|ref|YP_005643192.1|	-	5.1e-18	65.2	0.0	1.4e-17	63.7	0.0	1.8	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|384433834|ref|YP_005643192.1|	-	0.00018	21.6	0.1	0.0025	17.9	0.0	2.5	2	0	0	2	2	2	1	SIS	domain
GATase_4	PF13230.6	gi|384433834|ref|YP_005643192.1|	-	0.00038	19.4	0.0	0.00068	18.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
bact-PGI_C	PF10432.9	gi|384433834|ref|YP_005643192.1|	-	0.1	12.7	0.0	0.88	9.6	0.0	2.4	2	1	0	2	2	2	0	Bacterial	phospho-glucose	isomerase	C-terminal	SIS	domain
GHMP_kinases_N	PF00288.26	gi|384433835|ref|YP_005643193.1|	-	4.6e-13	49.2	0.0	8.6e-13	48.3	0.0	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|384433835|ref|YP_005643193.1|	-	7.5e-11	42.2	0.1	1.7e-10	41.1	0.1	1.6	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
B5	PF03484.15	gi|384433835|ref|YP_005643193.1|	-	0.03	14.6	0.0	0.14	12.5	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetase	B5	domain
CheX	PF13690.6	gi|384433835|ref|YP_005643193.1|	-	0.083	13.1	0.1	0.37	11.0	0.0	2.0	2	0	0	2	2	2	0	Chemotaxis	phosphatase	CheX
FGAR-AT_linker	PF18072.1	gi|384433835|ref|YP_005643193.1|	-	0.14	12.7	0.0	1.5	9.4	0.0	2.6	3	0	0	3	3	3	0	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
DDE_Tnp_2	PF04693.12	gi|384433836|ref|YP_005643194.1|	-	4.8e-177	588.0	3.1	5.5e-177	587.8	3.1	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384433836|ref|YP_005643194.1|	-	4.7e-05	22.9	0.0	9.2e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384433836|ref|YP_005643194.1|	-	0.00077	19.2	0.0	0.0014	18.3	0.0	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384433836|ref|YP_005643194.1|	-	0.047	13.4	0.1	0.088	12.5	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
tRNA-Thr_ED	PF08915.11	gi|384433837|ref|YP_005643195.1|	-	1.4e-50	170.9	1.4	3.2e-50	169.7	0.1	2.0	2	0	0	2	2	2	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|384433837|ref|YP_005643195.1|	-	2.9e-24	85.0	1.1	6.6e-24	83.9	1.1	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
HGTP_anticodon2	PF12745.7	gi|384433837|ref|YP_005643195.1|	-	0.0011	18.6	0.3	0.0019	17.8	0.3	1.3	1	0	0	1	1	1	1	Anticodon	binding	domain	of	tRNAs
RapH_N	PF18801.1	gi|384433837|ref|YP_005643195.1|	-	0.0096	16.0	1.2	0.04	14.0	0.3	2.5	3	0	0	3	3	3	1	response	regulator	aspartate	phosphatase	H,	N	terminal
Glycoamylase	PF10091.9	gi|384433837|ref|YP_005643195.1|	-	0.071	12.7	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	Putative	glucoamylase
Beta-Casp	PF10996.8	gi|384433838|ref|YP_005643196.1|	-	2.1e-15	57.0	0.0	4.9e-15	55.8	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|384433838|ref|YP_005643196.1|	-	8.4e-15	54.5	0.0	1.8e-14	53.4	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_6	PF16661.5	gi|384433838|ref|YP_005643196.1|	-	5.4e-11	42.3	0.0	1.3e-10	41.0	0.0	1.6	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384433838|ref|YP_005643196.1|	-	5.6e-07	29.8	0.0	2.1e-06	27.9	0.0	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384433838|ref|YP_005643196.1|	-	3.5e-05	23.4	0.0	0.0002	20.9	0.0	2.1	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
PDEase_II	PF02112.15	gi|384433838|ref|YP_005643196.1|	-	0.027	13.6	0.0	0.041	13.0	0.0	1.3	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
GrlR	PF16518.5	gi|384433838|ref|YP_005643196.1|	-	0.053	13.5	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	T3SS	negative	regulator,GrlR
CheB_methylest	PF01339.17	gi|384433838|ref|YP_005643196.1|	-	0.054	13.2	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	CheB	methylesterase
Fim-adh_lectin	PF09222.10	gi|384433838|ref|YP_005643196.1|	-	0.11	12.0	0.0	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	Fimbrial	adhesin	F17-AG,	lectin	domain
NAC	PF01849.18	gi|384433839|ref|YP_005643197.1|	-	2.7e-08	33.6	2.0	2.7e-08	33.6	2.0	1.7	2	0	0	2	2	2	1	NAC	domain
potato_inhibit	PF00280.18	gi|384433839|ref|YP_005643197.1|	-	0.0024	18.5	0.4	0.24	12.1	0.0	2.3	2	0	0	2	2	2	2	Potato	inhibitor	I	family
HOIP-UBA	PF16678.5	gi|384433839|ref|YP_005643197.1|	-	0.043	13.8	1.6	0.083	12.9	1.6	1.6	1	1	0	1	1	1	0	HOIP	UBA	domain	pair
HTH_3	PF01381.22	gi|384433840|ref|YP_005643198.1|	-	2.5e-10	40.2	0.1	3.7e-09	36.5	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.7	gi|384433840|ref|YP_005643198.1|	-	1.1e-06	28.5	0.1	2.4e-06	27.5	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|384433840|ref|YP_005643198.1|	-	2.5e-05	24.5	0.0	4.3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|384433840|ref|YP_005643198.1|	-	0.0024	17.8	0.0	1.4	8.9	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
DOT1	PF08123.13	gi|384433840|ref|YP_005643198.1|	-	0.11	12.0	0.0	0.16	11.4	0.0	1.3	1	0	0	1	1	1	0	Histone	methylation	protein	DOT1
YdaS_antitoxin	PF15943.5	gi|384433840|ref|YP_005643198.1|	-	0.13	12.1	0.0	0.48	10.3	0.0	1.8	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
Glycos_transf_1	PF00534.20	gi|384433841|ref|YP_005643199.1|	-	8e-20	71.1	0.0	1.5e-19	70.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384433841|ref|YP_005643199.1|	-	8.6e-17	61.8	0.0	1.4e-16	61.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DNA_pol_E_B	PF04042.16	gi|384433841|ref|YP_005643199.1|	-	0.0029	17.0	0.0	0.0045	16.4	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Glyco_trans_1_2	PF13524.6	gi|384433841|ref|YP_005643199.1|	-	0.004	17.5	0.0	0.0086	16.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
ADIP	PF11559.8	gi|384433843|ref|YP_005643201.1|	-	7.7e-09	35.8	3.1	1.5e-05	25.1	0.1	2.2	1	1	1	2	2	2	2	Afadin-	and	alpha	-actinin-Binding
CENP-F_leu_zip	PF10473.9	gi|384433843|ref|YP_005643201.1|	-	8.7e-08	32.3	1.5	3.2e-07	30.5	1.4	1.8	1	1	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
LPP	PF04728.13	gi|384433843|ref|YP_005643201.1|	-	9.2e-08	32.4	18.8	0.033	14.6	0.9	5.0	2	1	2	5	5	4	2	Lipoprotein	leucine-zipper
TMF_DNA_bd	PF12329.8	gi|384433843|ref|YP_005643201.1|	-	3.8e-07	30.0	8.1	7.8e-05	22.6	3.2	2.2	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	DNA	binding
TolA_bind_tri	PF16331.5	gi|384433843|ref|YP_005643201.1|	-	4.9e-07	29.7	0.6	0.00014	21.9	0.2	3.1	1	1	2	3	3	3	1	TolA	binding	protein	trimerisation
IFT57	PF10498.9	gi|384433843|ref|YP_005643201.1|	-	9.3e-07	28.1	0.8	1.3e-06	27.7	0.8	1.1	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
DUF5082	PF16888.5	gi|384433843|ref|YP_005643201.1|	-	1.1e-06	29.0	8.0	0.13	12.5	1.3	3.1	1	1	2	3	3	3	3	Domain	of	unknown	function	(DUF5082)
FPP	PF05911.11	gi|384433843|ref|YP_005643201.1|	-	1.1e-06	27.2	0.2	1.4e-06	26.8	0.2	1.0	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
AAA_13	PF13166.6	gi|384433843|ref|YP_005643201.1|	-	2e-06	26.8	0.6	2.7e-06	26.3	0.6	1.0	1	0	0	1	1	1	1	AAA	domain
DUF1664	PF07889.12	gi|384433843|ref|YP_005643201.1|	-	2e-06	27.8	5.3	0.0011	19.0	0.3	2.4	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|384433843|ref|YP_005643201.1|	-	2.6e-06	27.7	9.9	0.093	13.1	1.8	4.0	1	1	3	4	4	4	3	Flagella	accessory	protein	C	(FlaC)
ATG16	PF08614.11	gi|384433843|ref|YP_005643201.1|	-	4.2e-06	27.1	2.6	1.3e-05	25.5	2.6	1.6	1	1	0	1	1	1	1	Autophagy	protein	16	(ATG16)
TMF_TATA_bd	PF12325.8	gi|384433843|ref|YP_005643201.1|	-	4.2e-06	27.0	2.9	0.00078	19.7	1.3	2.4	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
MscS_porin	PF12795.7	gi|384433843|ref|YP_005643201.1|	-	5.4e-06	26.1	4.0	9e-06	25.4	4.0	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
DivIC	PF04977.15	gi|384433843|ref|YP_005643201.1|	-	7.4e-06	25.6	0.1	0.15	11.8	0.3	3.2	1	1	1	2	2	2	1	Septum	formation	initiator
BST2	PF16716.5	gi|384433843|ref|YP_005643201.1|	-	7.9e-06	26.4	3.2	0.016	15.8	0.8	2.3	1	1	1	2	2	2	2	Bone	marrow	stromal	antigen	2
SlyX	PF04102.12	gi|384433843|ref|YP_005643201.1|	-	1.1e-05	26.0	0.1	0.015	15.9	0.0	2.6	1	1	1	2	2	2	2	SlyX
DUF3450	PF11932.8	gi|384433843|ref|YP_005643201.1|	-	1.2e-05	24.7	1.4	0.018	14.4	0.6	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3450)
Spc7	PF08317.11	gi|384433843|ref|YP_005643201.1|	-	1.5e-05	24.0	0.8	4.8e-05	22.4	0.8	1.6	1	1	0	1	1	1	1	Spc7	kinetochore	protein
BLOC1_2	PF10046.9	gi|384433843|ref|YP_005643201.1|	-	1.6e-05	25.1	2.8	0.0066	16.7	1.5	2.6	1	1	1	2	2	2	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Tektin	PF03148.14	gi|384433843|ref|YP_005643201.1|	-	1.7e-05	23.8	1.0	0.016	14.0	0.3	2.0	1	1	1	2	2	2	2	Tektin	family
Baculo_PEP_C	PF04513.12	gi|384433843|ref|YP_005643201.1|	-	1.8e-05	24.8	31.4	0.0024	17.9	9.8	3.0	2	1	1	3	3	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
bZIP_1	PF00170.21	gi|384433843|ref|YP_005643201.1|	-	2e-05	24.6	3.4	1.4	9.1	0.3	3.2	1	1	2	3	3	3	0	bZIP	transcription	factor
PspA_IM30	PF04012.12	gi|384433843|ref|YP_005643201.1|	-	3.5e-05	23.5	0.1	0.093	12.3	0.1	2.1	1	1	1	2	2	2	2	PspA/IM30	family
Laminin_II	PF06009.12	gi|384433843|ref|YP_005643201.1|	-	4e-05	23.7	7.8	0.0043	17.1	5.2	2.3	1	1	1	2	2	2	2	Laminin	Domain	II
Lzipper-MIP1	PF14389.6	gi|384433843|ref|YP_005643201.1|	-	4.1e-05	23.8	0.3	0.045	14.0	0.1	2.9	1	1	2	3	3	3	2	Leucine-zipper	of	ternary	complex	factor	MIP1
DUF2730	PF10805.8	gi|384433843|ref|YP_005643201.1|	-	4.8e-05	23.4	2.5	0.0015	18.6	0.1	3.0	1	1	2	3	3	2	1	Protein	of	unknown	function	(DUF2730)
DUF4988	PF16378.5	gi|384433843|ref|YP_005643201.1|	-	7.3e-05	22.5	5.2	0.092	12.4	1.3	3.3	1	1	2	3	3	3	1	Domain	of	unknown	function
NPV_P10	PF05531.12	gi|384433843|ref|YP_005643201.1|	-	7.5e-05	23.1	7.1	0.015	15.8	0.2	2.8	2	1	1	3	3	2	2	Nucleopolyhedrovirus	P10	protein
KASH_CCD	PF14662.6	gi|384433843|ref|YP_005643201.1|	-	7.9e-05	22.6	0.1	0.00011	22.0	0.1	1.2	1	0	0	1	1	1	1	Coiled-coil	region	of	CCDC155	or	KASH
SHE3	PF17078.5	gi|384433843|ref|YP_005643201.1|	-	8.1e-05	22.4	1.1	0.00012	21.9	1.1	1.1	1	0	0	1	1	1	1	SWI5-dependent	HO	expression	protein	3
BRE1	PF08647.11	gi|384433843|ref|YP_005643201.1|	-	0.00011	22.1	1.2	5.1	7.2	0.0	1.9	1	1	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
Filament	PF00038.21	gi|384433843|ref|YP_005643201.1|	-	0.00012	21.8	4.6	0.0023	17.6	0.4	1.8	1	1	1	2	2	2	2	Intermediate	filament	protein
APG6_N	PF17675.1	gi|384433843|ref|YP_005643201.1|	-	0.00012	22.6	0.0	0.00018	22.0	0.0	1.2	1	0	0	1	1	1	1	Apg6	coiled-coil	region
TSC22	PF01166.18	gi|384433843|ref|YP_005643201.1|	-	0.0002	21.6	0.7	2.6	8.4	0.0	3.3	1	1	1	3	3	3	0	TSC-22/dip/bun	family
DUF4201	PF13870.6	gi|384433843|ref|YP_005643201.1|	-	0.0003	20.6	0.2	0.00098	18.9	0.4	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4201)
XhlA	PF10779.9	gi|384433843|ref|YP_005643201.1|	-	0.00034	20.8	2.7	0.1	12.8	0.0	3.0	1	1	1	3	3	3	1	Haemolysin	XhlA
TPR_MLP1_2	PF07926.12	gi|384433843|ref|YP_005643201.1|	-	0.00034	20.7	2.5	0.0048	17.0	2.2	2.0	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
EzrA	PF06160.12	gi|384433843|ref|YP_005643201.1|	-	0.00034	18.9	0.5	0.00034	18.9	0.5	1.5	2	0	0	2	2	1	1	Septation	ring	formation	regulator,	EzrA
ABC_tran_CTD	PF16326.5	gi|384433843|ref|YP_005643201.1|	-	0.00037	20.7	0.0	0.03	14.6	0.0	2.3	1	1	1	2	2	2	2	ABC	transporter	C-terminal	domain
Cep57_MT_bd	PF06657.13	gi|384433843|ref|YP_005643201.1|	-	0.00039	20.8	0.0	0.15	12.5	0.0	2.5	1	1	1	2	2	2	1	Centrosome	microtubule-binding	domain	of	Cep57
Lebercilin	PF15619.6	gi|384433843|ref|YP_005643201.1|	-	0.00041	20.1	0.2	0.004	16.8	0.2	1.8	1	1	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
TRAF_BIRC3_bd	PF16673.5	gi|384433843|ref|YP_005643201.1|	-	0.00041	20.1	0.2	0.27	11.1	0.2	2.6	1	1	1	2	2	2	1	TNF	receptor-associated	factor	BIRC3	binding	domain
FAM76	PF16046.5	gi|384433843|ref|YP_005643201.1|	-	0.00048	19.6	0.1	0.00066	19.1	0.1	1.1	1	0	0	1	1	1	1	FAM76	protein
COG5	PF10392.9	gi|384433843|ref|YP_005643201.1|	-	0.00056	20.1	9.5	0.023	14.9	4.4	2.2	1	1	1	2	2	2	2	Golgi	transport	complex	subunit	5
HAP1_N	PF04849.13	gi|384433843|ref|YP_005643201.1|	-	0.0006	19.1	0.2	0.0013	18.0	0.2	1.5	1	1	0	1	1	1	1	HAP1	N-terminal	conserved	region
DUF4795	PF16043.5	gi|384433843|ref|YP_005643201.1|	-	0.00066	19.3	1.9	0.0062	16.2	0.5	2.1	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4795)
ZapB	PF06005.12	gi|384433843|ref|YP_005643201.1|	-	0.00069	20.0	1.2	0.42	11.1	0.5	2.5	1	1	2	3	3	3	1	Cell	division	protein	ZapB
Mod_r	PF07200.13	gi|384433843|ref|YP_005643201.1|	-	0.00079	19.6	0.9	0.0012	18.9	0.9	1.3	1	0	0	1	1	1	1	Modifier	of	rudimentary	(Mod(r))	protein
DUF812	PF05667.11	gi|384433843|ref|YP_005643201.1|	-	0.00079	18.4	1.4	0.19	10.6	0.5	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF812)
CarboxypepD_reg	PF13620.6	gi|384433843|ref|YP_005643201.1|	-	0.00087	19.5	1.6	0.00087	19.5	1.6	2.5	2	1	0	2	2	1	1	Carboxypeptidase	regulatory-like	domain
DUF4618	PF15397.6	gi|384433843|ref|YP_005643201.1|	-	0.0011	18.4	0.8	0.016	14.7	0.8	2.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4618)
Atg14	PF10186.9	gi|384433843|ref|YP_005643201.1|	-	0.0012	18.0	5.7	0.0013	17.9	1.9	2.5	2	1	0	2	2	2	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Csm1_N	PF18504.1	gi|384433843|ref|YP_005643201.1|	-	0.0013	19.0	1.5	0.88	10.0	0.3	3.3	1	1	2	3	3	3	0	Csm1	N-terminal	domain
JIP_LZII	PF16471.5	gi|384433843|ref|YP_005643201.1|	-	0.0015	18.6	1.6	1.1	9.5	0.1	2.8	1	1	1	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
GAS	PF13851.6	gi|384433843|ref|YP_005643201.1|	-	0.0017	17.8	0.1	0.0031	16.9	0.1	1.4	1	1	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Seryl_tRNA_N	PF02403.22	gi|384433843|ref|YP_005643201.1|	-	0.0018	18.5	0.7	0.0078	16.4	0.7	1.9	1	1	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
Rab5-bind	PF09311.11	gi|384433843|ref|YP_005643201.1|	-	0.0019	17.7	0.6	0.0026	17.2	0.6	1.1	1	0	0	1	1	1	1	Rabaptin-like	protein
Fez1	PF06818.15	gi|384433843|ref|YP_005643201.1|	-	0.0019	18.7	0.2	0.0028	18.2	0.2	1.1	1	0	0	1	1	1	1	Fez1
HOOK	PF05622.12	gi|384433843|ref|YP_005643201.1|	-	0.002	16.3	0.0	0.0027	15.9	0.0	1.1	1	0	0	1	1	1	1	HOOK	protein
DUF4140	PF13600.6	gi|384433843|ref|YP_005643201.1|	-	0.0021	18.5	0.4	0.46	11.0	0.0	3.1	2	1	1	3	3	2	1	N-terminal	domain	of	unknown	function	(DUF4140)
Phage_GP20	PF06810.11	gi|384433843|ref|YP_005643201.1|	-	0.0022	17.8	0.2	0.34	10.7	0.2	2.1	1	1	1	2	2	2	1	Phage	minor	structural	protein	GP20
MAD	PF05557.13	gi|384433843|ref|YP_005643201.1|	-	0.0024	16.3	0.1	0.0034	15.8	0.1	1.1	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
DUF724	PF05266.14	gi|384433843|ref|YP_005643201.1|	-	0.0026	17.6	0.0	0.0043	16.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF724)
FapA	PF03961.13	gi|384433843|ref|YP_005643201.1|	-	0.0029	16.3	4.3	0.0089	14.7	4.3	2.0	1	1	0	1	1	1	1	Flagellar	Assembly	Protein	A
PI3K_P85_iSH2	PF16454.5	gi|384433843|ref|YP_005643201.1|	-	0.0031	17.1	1.2	0.084	12.5	0.5	2.1	1	1	1	2	2	2	1	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
DUF4407	PF14362.6	gi|384433843|ref|YP_005643201.1|	-	0.0031	16.9	0.7	0.022	14.1	0.2	2.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
Spc24	PF08286.11	gi|384433843|ref|YP_005643201.1|	-	0.0033	17.6	5.7	3.9	7.8	5.7	2.8	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Nup54	PF13874.6	gi|384433843|ref|YP_005643201.1|	-	0.0034	17.5	0.7	0.005	17.0	0.7	1.2	1	0	0	1	1	1	1	Nucleoporin	complex	subunit	54
DUF16	PF01519.16	gi|384433843|ref|YP_005643201.1|	-	0.0034	17.8	0.2	0.099	13.1	0.1	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF16
Jnk-SapK_ap_N	PF09744.9	gi|384433843|ref|YP_005643201.1|	-	0.0035	17.6	1.0	0.37	11.0	0.3	2.1	1	1	1	2	2	2	1	JNK_SAPK-associated	protein-1
Gp58	PF07902.11	gi|384433843|ref|YP_005643201.1|	-	0.0036	15.7	5.7	0.0061	14.9	5.7	1.3	1	0	0	1	1	1	1	gp58-like	protein
CLZ	PF16526.5	gi|384433843|ref|YP_005643201.1|	-	0.0036	17.6	0.6	3.2	8.2	0.1	3.0	1	1	2	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Prefoldin	PF02996.17	gi|384433843|ref|YP_005643201.1|	-	0.0039	17.1	2.8	11	5.9	0.2	3.2	1	1	2	3	3	3	0	Prefoldin	subunit
Fib_alpha	PF08702.10	gi|384433843|ref|YP_005643201.1|	-	0.0039	17.4	4.3	0.0096	16.1	4.2	1.7	1	1	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
Cast	PF10174.9	gi|384433843|ref|YP_005643201.1|	-	0.0039	15.5	0.6	0.0056	15.0	0.6	1.1	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
YabA	PF06156.13	gi|384433843|ref|YP_005643201.1|	-	0.004	17.8	1.3	3	8.5	0.0	2.3	1	1	1	2	2	2	0	Initiation	control	protein	YabA
DUF4763	PF15960.5	gi|384433843|ref|YP_005643201.1|	-	0.0042	16.4	1.4	0.13	11.5	0.2	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4763)
DUF4094	PF13334.6	gi|384433843|ref|YP_005643201.1|	-	0.0045	17.4	6.4	0.15	12.5	0.3	3.4	1	1	2	3	3	3	1	Domain	of	unknown	function	(DUF4094)
Snapin_Pallidin	PF14712.6	gi|384433843|ref|YP_005643201.1|	-	0.0048	17.3	1.8	0.57	10.6	0.6	2.4	1	1	1	2	2	2	1	Snapin/Pallidin
GIT_CC	PF16559.5	gi|384433843|ref|YP_005643201.1|	-	0.0048	16.7	7.8	0.016	15.1	2.0	2.8	2	2	0	2	2	2	1	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
Spc42p	PF11544.8	gi|384433843|ref|YP_005643201.1|	-	0.0049	16.8	0.6	0.34	10.9	0.1	2.5	1	1	1	2	2	2	1	Spindle	pole	body	component	Spc42p
DUF1640	PF07798.11	gi|384433843|ref|YP_005643201.1|	-	0.0053	16.8	0.2	0.011	15.8	0.2	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1640)
TMPIT	PF07851.13	gi|384433843|ref|YP_005643201.1|	-	0.0055	16.0	2.0	0.014	14.7	0.4	2.1	2	0	0	2	2	2	1	TMPIT-like	protein
Prefoldin_2	PF01920.20	gi|384433843|ref|YP_005643201.1|	-	0.0056	16.6	0.3	4.1	7.4	0.1	2.6	1	1	0	2	2	2	0	Prefoldin	subunit
HemX	PF04375.14	gi|384433843|ref|YP_005643201.1|	-	0.0061	15.9	2.5	0.026	13.8	2.5	2.0	1	1	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Vps51	PF08700.11	gi|384433843|ref|YP_005643201.1|	-	0.0067	16.5	5.9	7.5	6.7	0.4	3.7	1	1	3	4	4	4	0	Vps51/Vps67
Ran-binding	PF05508.11	gi|384433843|ref|YP_005643201.1|	-	0.0073	15.3	2.2	0.011	14.8	2.2	1.2	1	0	0	1	1	1	1	RanGTP-binding	protein
DUF713	PF05218.14	gi|384433843|ref|YP_005643201.1|	-	0.0074	16.0	0.3	0.02	14.6	0.3	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF713)
DUF4349	PF14257.6	gi|384433843|ref|YP_005643201.1|	-	0.0077	15.7	6.0	0.015	14.8	3.6	2.5	2	1	0	2	2	1	1	Domain	of	unknown	function	(DUF4349)
Cep57_CLD_2	PF14197.6	gi|384433843|ref|YP_005643201.1|	-	0.0085	16.2	5.6	0.26	11.4	2.2	2.3	1	1	1	2	2	2	1	Centrosome	localisation	domain	of	PPC89
DASH_Hsk3	PF08227.11	gi|384433843|ref|YP_005643201.1|	-	0.0089	16.4	8.3	2.6	8.5	0.2	3.8	1	1	2	3	3	3	0	DASH	complex	subunit	Hsk3	like
DUF603	PF04645.12	gi|384433843|ref|YP_005643201.1|	-	0.0091	15.7	5.6	0.14	11.9	1.3	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function,	DUF603
DUF3584	PF12128.8	gi|384433843|ref|YP_005643201.1|	-	0.0092	13.6	0.0	0.012	13.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
HMMR_N	PF15905.5	gi|384433843|ref|YP_005643201.1|	-	0.0093	15.5	0.5	0.014	14.9	0.5	1.2	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
EMP24_GP25L	PF01105.24	gi|384433843|ref|YP_005643201.1|	-	0.0096	15.9	1.5	0.25	11.3	1.5	2.6	1	1	0	1	1	1	1	emp24/gp25L/p24	family/GOLD
LXG	PF04740.12	gi|384433843|ref|YP_005643201.1|	-	0.01	15.6	4.1	1.9	8.1	0.4	2.5	1	1	1	2	2	2	0	LXG	domain	of	WXG	superfamily
DASH_Dam1	PF08653.10	gi|384433843|ref|YP_005643201.1|	-	0.011	15.6	5.8	8.4	6.3	0.3	3.6	1	1	3	4	4	4	0	DASH	complex	subunit	Dam1
Sec34	PF04136.15	gi|384433843|ref|YP_005643201.1|	-	0.011	15.6	7.5	0.16	11.8	2.6	2.3	1	1	1	2	2	2	0	Sec34-like	family
FliJ	PF02050.16	gi|384433843|ref|YP_005643201.1|	-	0.011	16.0	0.0	0.28	11.4	0.0	2.0	1	1	1	2	2	2	0	Flagellar	FliJ	protein
Lipoprotein_7	PF01540.16	gi|384433843|ref|YP_005643201.1|	-	0.011	15.1	0.2	0.018	14.4	0.2	1.3	1	0	0	1	1	1	0	Adhesin	lipoprotein
Prominin	PF05478.11	gi|384433843|ref|YP_005643201.1|	-	0.011	13.7	4.2	0.016	13.2	4.2	1.2	1	0	0	1	1	1	0	Prominin
UPF0242	PF06785.11	gi|384433843|ref|YP_005643201.1|	-	0.012	15.8	0.0	0.017	15.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DASH_Spc34	PF08657.10	gi|384433843|ref|YP_005643201.1|	-	0.012	15.4	0.1	2.6	7.8	0.1	2.2	1	1	1	2	2	2	0	DASH	complex	subunit	Spc34
Nsp1_C	PF05064.13	gi|384433843|ref|YP_005643201.1|	-	0.012	15.4	0.9	0.043	13.6	0.9	1.8	1	1	0	1	1	1	0	Nsp1-like	C-terminal	region
Tropomyosin_1	PF12718.7	gi|384433843|ref|YP_005643201.1|	-	0.012	15.8	0.1	0.026	14.7	0.1	1.5	1	1	0	1	1	1	0	Tropomyosin	like
CALCOCO1	PF07888.11	gi|384433843|ref|YP_005643201.1|	-	0.013	14.4	4.5	0.024	13.5	4.5	1.4	1	1	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
WEMBL	PF05701.11	gi|384433843|ref|YP_005643201.1|	-	0.013	14.2	0.9	0.019	13.7	0.9	1.2	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
HIP1_clath_bdg	PF16515.5	gi|384433843|ref|YP_005643201.1|	-	0.013	16.1	6.1	0.03	14.9	1.2	2.4	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
CCDC158	PF15921.5	gi|384433843|ref|YP_005643201.1|	-	0.014	13.3	0.1	0.018	12.9	0.1	1.1	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	158
MbeD_MobD	PF04899.12	gi|384433843|ref|YP_005643201.1|	-	0.014	15.5	5.4	0.51	10.5	3.4	3.6	2	1	0	2	2	1	0	MbeD/MobD	like
Uso1_p115_C	PF04871.13	gi|384433843|ref|YP_005643201.1|	-	0.015	15.6	2.8	0.15	12.4	0.2	2.1	1	1	1	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Bacillus_HBL	PF05791.11	gi|384433843|ref|YP_005643201.1|	-	0.015	15.1	8.9	0.11	12.4	1.8	3.2	2	1	1	3	3	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
Sec3_C	PF09763.9	gi|384433843|ref|YP_005643201.1|	-	0.016	13.6	3.7	0.022	13.2	3.7	1.1	1	0	0	1	1	1	0	Exocyst	complex	component	Sec3
DUF4200	PF13863.6	gi|384433843|ref|YP_005643201.1|	-	0.016	15.6	0.0	0.18	12.2	0.0	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
Allexi_40kDa	PF05549.11	gi|384433843|ref|YP_005643201.1|	-	0.017	14.6	3.1	0.029	13.9	3.1	1.3	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
Laminin_I	PF06008.14	gi|384433843|ref|YP_005643201.1|	-	0.018	14.7	6.5	0.03	14.0	6.5	1.3	1	0	0	1	1	1	0	Laminin	Domain	I
Swi5	PF07061.11	gi|384433843|ref|YP_005643201.1|	-	0.019	15.0	1.9	1.9	8.6	0.6	2.8	1	1	1	2	2	2	0	Swi5
HAUS-augmin3	PF14932.6	gi|384433843|ref|YP_005643201.1|	-	0.02	14.5	2.9	0.04	13.5	2.9	1.4	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Myosin_tail_1	PF01576.19	gi|384433843|ref|YP_005643201.1|	-	0.02	12.7	0.2	0.026	12.3	0.2	1.0	1	0	0	1	1	1	0	Myosin	tail
DHR10	PF18595.1	gi|384433843|ref|YP_005643201.1|	-	0.02	14.9	0.2	1.6	8.8	0.1	2.2	1	1	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
Golgin_A5	PF09787.9	gi|384433843|ref|YP_005643201.1|	-	0.021	14.3	0.3	0.036	13.5	0.3	1.3	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
Exonuc_VII_L	PF02601.15	gi|384433843|ref|YP_005643201.1|	-	0.021	14.4	0.0	0.028	14.0	0.0	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
FlxA	PF14282.6	gi|384433843|ref|YP_005643201.1|	-	0.021	14.8	10.2	0.033	14.2	1.1	2.4	1	1	1	2	2	2	0	FlxA-like	protein
Med9	PF07544.13	gi|384433843|ref|YP_005643201.1|	-	0.021	14.9	0.4	0.67	10.1	0.2	2.4	1	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Spc29	PF17082.5	gi|384433843|ref|YP_005643201.1|	-	0.022	14.6	1.4	0.04	13.7	1.4	1.4	1	1	0	1	1	1	0	Spindle	Pole	Component	29
APG17	PF04108.12	gi|384433843|ref|YP_005643201.1|	-	0.022	13.9	3.4	0.044	12.9	2.4	1.6	1	1	0	1	1	1	0	Autophagy	protein	Apg17
COG6	PF06419.11	gi|384433843|ref|YP_005643201.1|	-	0.024	12.9	7.6	0.037	12.3	2.0	2.0	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
JAKMIP_CC3	PF16034.5	gi|384433843|ref|YP_005643201.1|	-	0.025	14.5	0.0	0.038	14.0	0.0	1.1	1	0	0	1	1	1	0	JAKMIP	CC3	domain
DUF4686	PF15742.5	gi|384433843|ref|YP_005643201.1|	-	0.026	13.7	0.1	0.036	13.2	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4686)
T4SS	PF07996.11	gi|384433843|ref|YP_005643201.1|	-	0.029	14.8	3.5	0.061	13.7	3.5	1.6	1	0	0	1	1	1	0	Type	IV	secretion	system	proteins
THOC7	PF05615.13	gi|384433843|ref|YP_005643201.1|	-	0.03	14.6	0.3	0.05	13.9	0.3	1.3	1	0	0	1	1	1	0	Tho	complex	subunit	7
COG2	PF06148.11	gi|384433843|ref|YP_005643201.1|	-	0.033	14.3	3.3	1	9.5	0.3	2.3	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RasGAP_C	PF03836.15	gi|384433843|ref|YP_005643201.1|	-	0.036	14.2	2.5	1.2	9.3	0.5	2.3	1	1	1	2	2	2	0	RasGAP	C-terminus
CCDC144C	PF14915.6	gi|384433843|ref|YP_005643201.1|	-	0.036	13.2	7.1	1.2	8.2	7.0	2.1	1	1	0	1	1	1	0	CCDC144C	protein	coiled-coil	region
FmiP_Thoc5	PF09766.9	gi|384433843|ref|YP_005643201.1|	-	0.037	13.3	4.6	0.46	9.7	1.4	2.0	1	1	1	2	2	2	0	Fms-interacting	protein/Thoc5
CCDC154	PF15450.6	gi|384433843|ref|YP_005643201.1|	-	0.038	12.6	0.1	0.23	10.0	0.1	1.8	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	154
Baculo_F	PF12259.8	gi|384433843|ref|YP_005643201.1|	-	0.041	12.4	0.7	0.071	11.6	0.7	1.4	1	0	0	1	1	1	0	Baculovirus	F	protein
DUF641	PF04859.12	gi|384433843|ref|YP_005643201.1|	-	0.041	14.2	0.3	7.2	7.0	0.1	2.3	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
HlyD_2	PF12700.7	gi|384433843|ref|YP_005643201.1|	-	0.043	12.6	0.5	0.066	11.9	0.5	1.2	1	0	0	1	1	1	0	HlyD	family	secretion	protein
Yuri_gagarin	PF15934.5	gi|384433843|ref|YP_005643201.1|	-	0.045	13.6	0.2	0.11	12.4	0.2	1.5	1	1	0	1	1	1	0	Yuri	gagarin
DUF4472	PF14739.6	gi|384433843|ref|YP_005643201.1|	-	0.046	14.4	0.4	0.13	13.0	0.4	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4472)
WXG100	PF06013.12	gi|384433843|ref|YP_005643201.1|	-	0.052	13.8	1.6	16	5.8	0.6	3.3	1	1	2	3	3	3	0	Proteins	of	100	residues	with	WXG
HALZ	PF02183.18	gi|384433843|ref|YP_005643201.1|	-	0.052	13.8	1.8	28	5.1	0.1	3.5	1	1	3	4	4	3	0	Homeobox	associated	leucine	zipper
DUF2968	PF11180.8	gi|384433843|ref|YP_005643201.1|	-	0.055	13.1	0.0	0.091	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
CdvA	PF18822.1	gi|384433843|ref|YP_005643201.1|	-	0.057	13.2	0.6	0.46	10.3	0.4	2.2	1	1	1	2	2	2	0	CdvA-like	coiled-coil	domain
SKA1	PF07160.12	gi|384433843|ref|YP_005643201.1|	-	0.065	13.1	2.1	0.46	10.3	1.3	2.0	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
MT	PF12777.7	gi|384433843|ref|YP_005643201.1|	-	0.065	12.2	0.2	0.093	11.7	0.2	1.2	1	0	0	1	1	1	0	Microtubule-binding	stalk	of	dynein	motor
USP8_interact	PF08941.10	gi|384433843|ref|YP_005643201.1|	-	0.065	13.0	0.7	0.73	9.6	0.7	2.1	1	1	1	2	2	2	0	USP8	interacting
Leu_zip	PF15294.6	gi|384433843|ref|YP_005643201.1|	-	0.066	12.7	1.2	0.09	12.3	1.2	1.1	1	0	0	1	1	1	0	Leucine	zipper
HsbA	PF12296.8	gi|384433843|ref|YP_005643201.1|	-	0.07	13.6	12.4	2.1	8.8	5.0	3.0	1	1	1	2	2	2	0	Hydrophobic	surface	binding	protein	A
Fungal_TACC	PF12709.7	gi|384433843|ref|YP_005643201.1|	-	0.072	13.5	0.7	46	4.6	0.0	3.3	1	1	1	3	3	3	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
Phage_HK97_TLTM	PF06120.11	gi|384433843|ref|YP_005643201.1|	-	0.076	12.2	0.2	0.12	11.5	0.2	1.3	1	0	0	1	1	1	0	Tail	length	tape	measure	protein
Sec2p	PF06428.11	gi|384433843|ref|YP_005643201.1|	-	0.078	13.0	1.3	0.84	9.7	0.3	2.1	1	1	1	2	2	2	0	GDP/GTP	exchange	factor	Sec2p
CREPT	PF16566.5	gi|384433843|ref|YP_005643201.1|	-	0.083	13.1	0.3	0.2	11.8	0.2	1.5	1	1	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Fmp27_WPPW	PF10359.9	gi|384433843|ref|YP_005643201.1|	-	0.087	11.7	0.6	0.13	11.0	0.6	1.3	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Vps53_N	PF04100.12	gi|384433843|ref|YP_005643201.1|	-	0.088	11.8	1.9	0.13	11.2	1.9	1.1	1	0	0	1	1	1	0	Vps53-like,	N-terminal
Dynamitin	PF04912.14	gi|384433843|ref|YP_005643201.1|	-	0.088	12.1	4.7	0.4	9.9	4.8	1.8	1	1	0	1	1	1	0	Dynamitin
Not3	PF04065.15	gi|384433843|ref|YP_005643201.1|	-	0.089	12.2	0.8	0.24	10.8	0.8	1.6	1	1	0	1	1	1	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
BicD	PF09730.9	gi|384433843|ref|YP_005643201.1|	-	0.091	11.2	0.8	0.12	10.8	0.8	1.1	1	0	0	1	1	1	0	Microtubule-associated	protein	Bicaudal-D
DUF2383	PF09537.10	gi|384433843|ref|YP_005643201.1|	-	0.093	13.1	0.7	14	6.1	0.1	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2383)
YkyA	PF10368.9	gi|384433843|ref|YP_005643201.1|	-	0.095	12.4	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
DivIVA	PF05103.13	gi|384433843|ref|YP_005643201.1|	-	0.1	12.7	1.0	17	5.5	0.4	2.4	1	1	0	2	2	2	0	DivIVA	protein
Lectin_N	PF03954.14	gi|384433843|ref|YP_005643201.1|	-	0.1	12.3	8.6	1.2	8.9	8.7	2.4	1	1	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
CC2-LZ	PF16516.5	gi|384433843|ref|YP_005643201.1|	-	0.1	13.0	0.0	0.6	10.5	0.1	1.9	1	1	1	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
Syntaxin-6_N	PF09177.11	gi|384433843|ref|YP_005643201.1|	-	0.1	13.1	4.5	4.3	7.9	4.6	2.4	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
SF-assemblin	PF06705.11	gi|384433843|ref|YP_005643201.1|	-	0.11	11.9	2.8	0.27	10.5	2.8	1.5	1	1	0	1	1	1	0	SF-assemblin/beta	giardin
Vps5	PF09325.10	gi|384433843|ref|YP_005643201.1|	-	0.11	12.1	5.5	0.16	11.5	5.2	1.4	1	1	0	1	1	1	0	Vps5	C	terminal	like
AIP3	PF03915.13	gi|384433843|ref|YP_005643201.1|	-	0.11	11.6	0.2	0.14	11.2	0.2	1.1	1	0	0	1	1	1	0	Actin	interacting	protein	3
MG2	PF01835.19	gi|384433843|ref|YP_005643201.1|	-	0.11	13.0	0.1	2.5	8.6	0.0	2.4	2	0	0	2	2	2	0	MG2	domain
RIFIN	PF02009.16	gi|384433843|ref|YP_005643201.1|	-	0.11	12.4	3.3	0.2	11.5	3.3	1.4	1	0	0	1	1	1	0	Rifin
Phage_GPO	PF05929.11	gi|384433843|ref|YP_005643201.1|	-	0.11	12.1	0.1	0.18	11.4	0.1	1.3	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
HR1	PF02185.16	gi|384433843|ref|YP_005643201.1|	-	0.12	12.5	4.1	1.7	8.8	1.5	2.9	1	1	1	2	2	2	0	Hr1	repeat
GrpE	PF01025.19	gi|384433843|ref|YP_005643201.1|	-	0.12	12.1	0.1	2.6	7.7	0.2	2.1	1	1	1	2	2	2	0	GrpE
Paramyx_P_V_C	PF03210.13	gi|384433843|ref|YP_005643201.1|	-	0.13	12.1	6.0	1.7	8.4	1.7	2.9	1	1	2	3	3	3	0	Paramyxovirus	P/V	phosphoprotein	C-terminal
DLP_helical	PF18709.1	gi|384433843|ref|YP_005643201.1|	-	0.14	11.3	1.0	1.5	8.0	0.4	2.1	1	1	1	2	2	2	0	Dynamin-like	helical	domain
Cluap1	PF10234.9	gi|384433843|ref|YP_005643201.1|	-	0.14	11.5	0.7	0.71	9.2	0.3	1.8	1	1	1	2	2	2	0	Clusterin-associated	protein-1
DASH_Duo1	PF08651.10	gi|384433843|ref|YP_005643201.1|	-	0.15	11.9	10.1	1	9.2	2.7	3.1	1	1	2	3	3	3	0	DASH	complex	subunit	Duo1
CENP-H	PF05837.12	gi|384433843|ref|YP_005643201.1|	-	0.15	12.5	6.2	1.8	9.0	6.1	2.1	1	1	0	1	1	1	0	Centromere	protein	H	(CENP-H)
Wtap	PF17098.5	gi|384433843|ref|YP_005643201.1|	-	0.16	11.9	1.6	0.93	9.4	0.3	2.0	1	1	0	1	1	1	0	WTAP/Mum2p	family
LidA_Long_CC	PF18641.1	gi|384433843|ref|YP_005643201.1|	-	0.16	12.0	0.0	0.33	11.0	0.0	1.5	1	1	0	1	1	1	0	LidA	long	coiled-coil	domain
Dynactin_p22	PF07426.11	gi|384433843|ref|YP_005643201.1|	-	0.18	11.7	3.8	0.37	10.6	3.3	1.7	1	1	0	1	1	1	0	Dynactin	subunit	p22
RPW8	PF05659.11	gi|384433843|ref|YP_005643201.1|	-	0.18	11.5	0.3	0.8	9.4	0.2	2.0	1	1	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Mce4_CUP1	PF11887.8	gi|384433843|ref|YP_005643201.1|	-	0.19	11.2	5.8	0.36	10.3	5.3	1.7	1	1	1	2	2	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Val_tRNA-synt_C	PF10458.9	gi|384433843|ref|YP_005643201.1|	-	0.19	12.0	0.1	69	3.8	0.0	3.1	1	1	1	3	3	3	0	Valyl	tRNA	synthetase	tRNA	binding	arm
Taxilin	PF09728.9	gi|384433843|ref|YP_005643201.1|	-	0.2	10.8	0.2	0.4	9.8	0.2	1.3	1	1	0	1	1	1	0	Myosin-like	coiled-coil	protein
Rootletin	PF15035.6	gi|384433843|ref|YP_005643201.1|	-	0.21	11.6	0.0	0.41	10.6	0.0	1.4	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Helo_like_N	PF17111.5	gi|384433843|ref|YP_005643201.1|	-	0.21	10.9	5.0	1.5	8.1	0.4	2.4	1	1	1	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
TBK1_CCD1	PF18394.1	gi|384433843|ref|YP_005643201.1|	-	0.21	11.1	5.7	8	5.9	5.1	2.7	1	1	0	1	1	1	0	TANK-binding	kinase	1	coiled-coil	domain	1
HlyE	PF06109.13	gi|384433843|ref|YP_005643201.1|	-	0.23	10.7	8.1	0.016	14.6	2.3	1.8	2	1	0	2	2	1	0	Haemolysin	E	(HlyE)
HMMR_C	PF15908.5	gi|384433843|ref|YP_005643201.1|	-	0.25	11.6	0.4	23	5.2	0.1	2.4	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	C-terminal
TssO	PF17561.2	gi|384433843|ref|YP_005643201.1|	-	0.26	11.4	0.1	0.26	11.4	0.1	1.7	2	0	0	2	2	1	0	Type	VI	secretion	system,	TssO
Fzo_mitofusin	PF04799.13	gi|384433843|ref|YP_005643201.1|	-	0.26	10.8	2.4	4.6	6.8	2.4	2.7	1	1	0	1	1	1	0	fzo-like	conserved	region
Syntaxin_2	PF14523.6	gi|384433843|ref|YP_005643201.1|	-	0.28	11.6	12.6	0.91	9.9	6.9	2.3	1	1	1	2	2	2	0	Syntaxin-like	protein
RmuC	PF02646.16	gi|384433843|ref|YP_005643201.1|	-	0.28	10.3	1.5	0.88	8.6	1.2	1.8	1	1	0	1	1	1	0	RmuC	family
CtIP_N	PF10482.9	gi|384433843|ref|YP_005643201.1|	-	0.3	11.2	1.5	24	5.0	0.1	2.5	1	1	1	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
Tropomyosin	PF00261.20	gi|384433843|ref|YP_005643201.1|	-	0.3	10.4	0.1	0.86	8.9	0.1	1.5	1	1	1	2	2	2	0	Tropomyosin
V-SNARE	PF05008.15	gi|384433843|ref|YP_005643201.1|	-	0.39	11.1	1.1	0.86	10.0	1.1	1.6	1	1	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
CHDCT2	PF08074.11	gi|384433843|ref|YP_005643201.1|	-	0.43	10.8	2.2	5.6	7.1	0.7	2.2	1	1	1	2	2	2	0	CHDCT2	(NUC038)	domain
Mating_N	PF12731.7	gi|384433843|ref|YP_005643201.1|	-	0.53	10.4	4.2	1.8	8.7	2.5	2.4	1	1	1	2	2	2	0	Mating-type	protein	beta	1
Vps52	PF04129.12	gi|384433843|ref|YP_005643201.1|	-	0.54	8.9	5.0	0.91	8.2	5.0	1.4	1	0	0	1	1	1	0	Vps52	/	Sac2	family
Dor1	PF04124.12	gi|384433843|ref|YP_005643201.1|	-	0.69	8.5	5.1	3	6.4	5.2	1.8	1	1	1	2	2	2	0	Dor1-like	family
DASH_Dad4	PF08650.10	gi|384433843|ref|YP_005643201.1|	-	0.77	9.8	6.1	8.1	6.5	1.7	3.6	1	1	3	4	4	4	0	DASH	complex	subunit	Dad4
LcrV	PF04792.12	gi|384433843|ref|YP_005643201.1|	-	0.82	8.9	6.0	0.9	8.8	3.4	2.0	1	1	1	2	2	2	0	V	antigen	(LcrV)	protein
DASH_Dad2	PF08654.10	gi|384433843|ref|YP_005643201.1|	-	1.2	9.6	4.5	4.1	7.9	1.2	2.8	1	1	1	2	2	2	0	DASH	complex	subunit	Dad2
DUF948	PF06103.11	gi|384433843|ref|YP_005643201.1|	-	1.4	9.3	16.0	0.092	13.0	4.5	3.7	2	1	0	2	2	1	0	Bacterial	protein	of	unknown	function	(DUF948)
DASH_Dad3	PF08656.10	gi|384433843|ref|YP_005643201.1|	-	2	8.5	9.9	4.7e+03	-2.3	9.9	3.7	1	1	0	1	1	0	0	DASH	complex	subunit	Dad3
AATF-Che1	PF13339.6	gi|384433843|ref|YP_005643201.1|	-	4.4	8.0	5.1	33	5.2	5.1	2.0	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
Sec8_exocyst	PF04048.14	gi|384433843|ref|YP_005643201.1|	-	4.6	7.1	9.2	0.9	9.4	2.3	2.2	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Helicase_RecD	PF05127.14	gi|384433844|ref|YP_005643202.1|	-	4.5e-50	169.9	0.0	7.8e-50	169.2	0.0	1.4	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|384433844|ref|YP_005643202.1|	-	2.9e-33	115.2	0.1	9e-24	84.1	0.0	2.3	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|384433844|ref|YP_005643202.1|	-	1.7e-20	72.8	0.0	3.7e-20	71.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_7	PF13508.7	gi|384433844|ref|YP_005643202.1|	-	2e-05	24.9	0.0	6.7e-05	23.2	0.0	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
AAA_30	PF13604.6	gi|384433844|ref|YP_005643202.1|	-	6.2e-05	22.8	0.0	0.00014	21.6	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Acetyltransf_1	PF00583.25	gi|384433844|ref|YP_005643202.1|	-	7.5e-05	23.0	0.0	0.00016	21.9	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
AAA_22	PF13401.6	gi|384433844|ref|YP_005643202.1|	-	0.0002	21.6	0.0	0.0025	18.1	0.0	2.7	2	1	1	3	3	3	1	AAA	domain
Acetyltransf_10	PF13673.7	gi|384433844|ref|YP_005643202.1|	-	0.039	13.9	0.0	0.082	12.9	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
AAA_19	PF13245.6	gi|384433844|ref|YP_005643202.1|	-	0.058	13.7	0.0	0.31	11.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Terminase_1	PF03354.15	gi|384433844|ref|YP_005643202.1|	-	0.06	11.9	0.0	0.12	10.8	0.0	1.4	1	0	0	1	1	1	0	Phage	Terminase
Acetyltransf_CG	PF14542.6	gi|384433844|ref|YP_005643202.1|	-	0.089	12.9	0.0	0.27	11.4	0.0	1.8	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
MTS	PF05175.14	gi|384433845|ref|YP_005643203.1|	-	4.5e-36	123.9	0.0	5.2e-36	123.7	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|384433845|ref|YP_005643203.1|	-	9.7e-12	44.9	0.0	1.3e-11	44.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|384433845|ref|YP_005643203.1|	-	7e-11	42.1	0.1	8.9e-11	41.7	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|384433845|ref|YP_005643203.1|	-	1.2e-08	35.0	0.0	2.2e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384433845|ref|YP_005643203.1|	-	2.4e-07	31.4	0.0	3.3e-07	30.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|384433845|ref|YP_005643203.1|	-	4.3e-07	29.9	1.3	1.1e-06	28.5	0.3	1.8	1	1	1	2	2	2	1	Met-10+	like-protein
Methyltransf_15	PF09445.10	gi|384433845|ref|YP_005643203.1|	-	2e-05	24.2	0.1	2.3e-05	24.0	0.1	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_12	PF08242.12	gi|384433845|ref|YP_005643203.1|	-	8.3e-05	23.3	0.0	0.00011	22.8	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.9	gi|384433845|ref|YP_005643203.1|	-	0.00011	22.0	0.1	0.00022	21.0	0.1	1.6	1	1	0	1	1	1	1	Lysine	methyltransferase
GidB	PF02527.15	gi|384433845|ref|YP_005643203.1|	-	0.0002	20.7	0.3	0.00047	19.5	0.3	1.7	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Cons_hypoth95	PF03602.15	gi|384433845|ref|YP_005643203.1|	-	0.00039	20.1	0.0	0.00043	20.0	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_4	PF02390.17	gi|384433845|ref|YP_005643203.1|	-	0.00046	19.7	0.1	0.00082	18.9	0.1	1.4	2	0	0	2	2	2	1	Putative	methyltransferase
TehB	PF03848.14	gi|384433845|ref|YP_005643203.1|	-	0.00065	19.2	0.4	0.0036	16.7	0.1	1.9	2	0	0	2	2	2	1	Tellurite	resistance	protein	TehB
Methyltransf_11	PF08241.12	gi|384433845|ref|YP_005643203.1|	-	0.001	19.7	0.0	0.0014	19.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384433845|ref|YP_005643203.1|	-	0.0035	17.2	0.0	0.0038	17.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|384433845|ref|YP_005643203.1|	-	0.0091	15.3	0.0	0.011	15.0	0.0	1.3	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_2	PF00891.18	gi|384433845|ref|YP_005643203.1|	-	0.011	15.0	0.0	0.017	14.4	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
UPF0020	PF01170.18	gi|384433845|ref|YP_005643203.1|	-	0.012	15.3	0.0	0.018	14.8	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
TRM	PF02005.16	gi|384433845|ref|YP_005643203.1|	-	0.015	14.5	0.1	0.02	14.1	0.1	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_32	PF13679.6	gi|384433845|ref|YP_005643203.1|	-	0.018	15.0	0.0	0.023	14.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|384433845|ref|YP_005643203.1|	-	0.058	12.7	0.0	0.12	11.7	0.0	1.3	1	1	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
TruB_C_2	PF16198.5	gi|384433846|ref|YP_005643204.1|	-	3.6e-23	81.5	0.1	9e-23	80.2	0.1	1.7	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
PUA	PF01472.20	gi|384433846|ref|YP_005643204.1|	-	3.7e-21	74.9	0.9	1.7e-20	72.7	0.2	2.0	2	0	0	2	2	2	1	PUA	domain
TruB_N	PF01509.18	gi|384433846|ref|YP_005643204.1|	-	6.5e-15	55.8	0.2	7.5e-11	42.6	0.2	3.3	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
UPF0113	PF03657.13	gi|384433846|ref|YP_005643204.1|	-	0.0059	16.8	1.5	0.026	14.8	0.1	2.3	2	0	0	2	2	2	1	UPF0113	PUA	domain
DKCLD	PF08068.12	gi|384433847|ref|YP_005643205.1|	-	6.5e-17	61.4	0.2	9.1e-17	60.9	0.2	1.2	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
TruB_N	PF01509.18	gi|384433847|ref|YP_005643205.1|	-	0.033	14.6	0.3	0.12	12.8	0.1	1.8	2	0	0	2	2	2	0	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
Ribosomal_L14e	PF01929.17	gi|384433848|ref|YP_005643206.1|	-	0.00034	21.1	0.1	0.0005	20.5	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L14
KOW	PF00467.29	gi|384433848|ref|YP_005643206.1|	-	0.0032	17.3	1.4	0.006	16.5	1.4	1.5	1	0	0	1	1	1	1	KOW	motif
XisI	PF08869.11	gi|384433848|ref|YP_005643206.1|	-	0.0071	16.7	0.1	0.0086	16.4	0.1	1.1	1	0	0	1	1	1	1	XisI	protein
YcgR_2	PF12945.7	gi|384433848|ref|YP_005643206.1|	-	0.054	13.6	0.2	3.7	7.8	0.0	2.2	2	0	0	2	2	2	0	Flagellar	protein	YcgR
DEAD	PF00270.29	gi|384433849|ref|YP_005643207.1|	-	1.2e-33	116.3	0.1	3.9e-33	114.7	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|384433849|ref|YP_005643207.1|	-	1.9e-24	86.1	3.4	5.9e-21	74.9	1.1	3.1	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
DEAD_assoc	PF08494.11	gi|384433849|ref|YP_005643207.1|	-	4.3e-13	49.5	0.0	2.3e-12	47.1	0.0	2.2	1	1	0	1	1	1	1	DEAD/H	associated
ResIII	PF04851.15	gi|384433849|ref|YP_005643207.1|	-	0.00011	22.3	0.0	0.00085	19.4	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.6	gi|384433849|ref|YP_005643207.1|	-	0.0085	16.4	0.0	0.033	14.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384433849|ref|YP_005643207.1|	-	0.17	12.2	0.6	2.6	8.3	0.6	2.6	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|384433850|ref|YP_005643208.1|	-	1.6e-10	41.4	0.7	3.5e-10	40.4	0.7	1.6	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_10	PF12846.7	gi|384433850|ref|YP_005643208.1|	-	7e-05	21.9	0.1	0.045	12.7	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_22	PF13401.6	gi|384433850|ref|YP_005643208.1|	-	0.00026	21.3	0.0	0.5	10.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|384433850|ref|YP_005643208.1|	-	0.00042	20.9	0.0	0.00079	20.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
TrwB_AAD_bind	PF10412.9	gi|384433850|ref|YP_005643208.1|	-	0.0033	16.4	0.0	0.71	8.7	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Pox_A32	PF04665.12	gi|384433850|ref|YP_005643208.1|	-	0.0035	16.8	0.6	0.33	10.4	0.1	2.4	2	0	0	2	2	2	1	Poxvirus	A32	protein
AAA_24	PF13479.6	gi|384433850|ref|YP_005643208.1|	-	0.0076	16.0	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|384433850|ref|YP_005643208.1|	-	0.008	15.4	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_29	PF13555.6	gi|384433850|ref|YP_005643208.1|	-	0.0091	15.7	0.5	0.021	14.5	0.5	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AIG1	PF04548.16	gi|384433850|ref|YP_005643208.1|	-	0.025	13.9	0.2	0.081	12.2	0.1	1.9	2	0	0	2	2	2	0	AIG1	family
ATPase_2	PF01637.18	gi|384433850|ref|YP_005643208.1|	-	0.028	14.3	0.5	0.078	12.9	0.1	1.9	1	1	1	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|384433850|ref|YP_005643208.1|	-	0.042	14.4	0.0	0.092	13.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|384433850|ref|YP_005643208.1|	-	0.044	13.1	0.1	0.081	12.3	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
RsgA_GTPase	PF03193.16	gi|384433850|ref|YP_005643208.1|	-	0.06	13.3	0.0	0.17	11.7	0.0	1.7	1	0	0	1	1	1	0	RsgA	GTPase
CPT	PF07931.12	gi|384433850|ref|YP_005643208.1|	-	0.083	12.7	0.0	0.35	10.7	0.0	1.9	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
MMR_HSR1	PF01926.23	gi|384433850|ref|YP_005643208.1|	-	0.092	12.8	0.1	0.33	11.1	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
PcrB	PF01884.17	gi|384433850|ref|YP_005643208.1|	-	0.11	12.0	0.0	0.22	11.0	0.0	1.4	1	0	0	1	1	1	0	PcrB	family
T2SSE	PF00437.20	gi|384433850|ref|YP_005643208.1|	-	0.12	11.5	0.0	0.18	10.8	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.17	gi|384433850|ref|YP_005643208.1|	-	0.12	12.1	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_16	PF13191.6	gi|384433850|ref|YP_005643208.1|	-	0.13	12.6	0.0	0.27	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_7	PF12775.7	gi|384433850|ref|YP_005643208.1|	-	0.14	11.6	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NACHT	PF05729.12	gi|384433850|ref|YP_005643208.1|	-	0.18	11.7	0.1	0.36	10.7	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
SMC_N	PF02463.19	gi|384433850|ref|YP_005643208.1|	-	0.45	9.9	1.1	0.86	9.0	1.1	1.4	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
RNA_pol_Rpo13	PF12136.8	gi|384433851|ref|YP_005643209.1|	-	1.7e-19	69.4	3.3	1.7e-19	69.4	3.3	2.1	2	0	0	2	2	2	1	RNA	polymerase	Rpo13	subunit	HTH	domain
PCNA_N	PF00705.18	gi|384433852|ref|YP_005643210.1|	-	1.9e-06	27.6	0.8	1.3e-05	24.9	0.1	2.1	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Hus1	PF04005.12	gi|384433852|ref|YP_005643210.1|	-	0.0011	18.2	0.1	0.0018	17.4	0.1	1.4	1	1	0	1	1	1	1	Hus1-like	protein
CsgF	PF10614.9	gi|384433852|ref|YP_005643210.1|	-	0.063	13.5	0.1	0.12	12.5	0.1	1.5	1	0	0	1	1	1	0	Type	VIII	secretion	system	(T8SS),	CsgF	protein
Amidohydro_1	PF01979.20	gi|384433853|ref|YP_005643211.1|	-	6.2e-18	65.2	0.0	3.8e-17	62.6	0.0	1.9	1	1	0	1	1	1	1	Amidohydrolase	family
GCH_III	PF05165.12	gi|384433854|ref|YP_005643212.1|	-	1.3e-39	135.9	0.1	1.7e-39	135.6	0.1	1.1	1	0	0	1	1	1	1	GTP	cyclohydrolase	III
mCpol	PF18182.1	gi|384433854|ref|YP_005643212.1|	-	0.0046	17.3	0.3	0.062	13.6	0.1	2.3	1	1	0	2	2	2	1	minimal	CRISPR	polymerase	domain
DMRL_synthase	PF00885.19	gi|384433855|ref|YP_005643213.1|	-	6.4e-37	126.5	1.1	7.4e-37	126.3	1.1	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
UPF0669	PF17065.5	gi|384433855|ref|YP_005643213.1|	-	0.0043	16.8	0.0	0.0063	16.3	0.0	1.3	1	0	0	1	1	1	1	Putative	cytokine,	C6ORF120
DMRL_synthase	PF00885.19	gi|384433856|ref|YP_005643214.1|	-	1.7e-12	47.3	0.1	2e-12	47.1	0.1	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
FUN14	PF04930.15	gi|384433856|ref|YP_005643214.1|	-	0.026	14.9	0.1	0.037	14.4	0.1	1.3	1	0	0	1	1	1	0	FUN14	family
DHBP_synthase	PF00926.19	gi|384433857|ref|YP_005643215.1|	-	2.5e-47	160.9	0.0	3e-47	160.6	0.0	1.1	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
Alb1	PF09135.11	gi|384433857|ref|YP_005643215.1|	-	0.07	14.0	0.1	0.12	13.2	0.1	1.4	1	0	0	1	1	1	0	Alb1
DUF2208	PF09973.9	gi|384433858|ref|YP_005643216.1|	-	1.8e-69	233.9	19.8	2.1e-69	233.7	19.8	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
EMC3_TMCO1	PF01956.16	gi|384433858|ref|YP_005643216.1|	-	3.2e-06	27.0	1.6	3.2e-06	27.0	1.6	2.3	1	1	1	2	2	2	1	Integral	membrane	protein	EMC3/TMCO1-like
YniB	PF14002.6	gi|384433858|ref|YP_005643216.1|	-	0.0096	15.7	1.5	0.0096	15.7	1.5	2.0	1	1	1	2	2	2	1	YniB-like	protein
GATase_3	PF07685.14	gi|384433859|ref|YP_005643217.1|	-	6.7e-43	146.6	0.3	9.5e-43	146.1	0.3	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
AAA_26	PF13500.6	gi|384433859|ref|YP_005643217.1|	-	1.1e-14	54.7	0.3	9.5e-10	38.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
CbiA	PF01656.23	gi|384433859|ref|YP_005643217.1|	-	1.3e-12	47.9	0.0	3.1e-12	46.7	0.0	1.7	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PCNA_N	PF00705.18	gi|384433860|ref|YP_005643218.1|	-	9.9e-16	57.6	1.9	2.5e-15	56.3	0.9	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|384433860|ref|YP_005643218.1|	-	5.3e-10	39.6	0.3	5e-08	33.2	0.1	2.4	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.16	gi|384433860|ref|YP_005643218.1|	-	5e-07	29.1	1.9	0.001	18.2	0.1	2.1	1	1	1	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
DNA_pol3_beta_3	PF02768.15	gi|384433860|ref|YP_005643218.1|	-	6.4e-06	26.0	2.9	0.022	14.6	0.6	2.5	2	1	0	2	2	2	2	DNA	polymerase	III	beta	subunit,	C-terminal	domain
Rad9	PF04139.13	gi|384433860|ref|YP_005643218.1|	-	4.1e-05	23.2	1.1	6.7e-05	22.5	1.1	1.4	1	1	0	1	1	1	1	Rad9
Hus1	PF04005.12	gi|384433860|ref|YP_005643218.1|	-	0.019	14.1	0.2	0.033	13.3	0.2	1.5	1	1	0	1	1	1	0	Hus1-like	protein
ocr	PF08684.10	gi|384433860|ref|YP_005643218.1|	-	0.021	15.2	0.2	0.08	13.4	0.2	2.0	2	0	0	2	2	2	0	DNA	mimic	ocr
Meth_synt_1	PF08267.12	gi|384433861|ref|YP_005643219.1|	-	1.9e-19	70.3	3.3	6.4e-19	68.6	1.1	2.0	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|384433861|ref|YP_005643219.1|	-	9.8e-06	25.1	0.0	2.2e-05	23.9	0.0	1.6	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_2	PF01717.18	gi|384433862|ref|YP_005643220.1|	-	4e-63	213.6	0.0	4.7e-63	213.4	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|384433862|ref|YP_005643220.1|	-	8.4e-15	55.1	0.7	3.4e-14	53.1	0.8	1.7	2	0	0	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|384433862|ref|YP_005643220.1|	-	0.0009	18.5	0.0	0.0014	17.9	0.0	1.2	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Phage_sheath_1C	PF17482.2	gi|384433862|ref|YP_005643220.1|	-	0.072	13.1	0.2	19	5.3	0.0	3.0	3	0	0	3	3	3	0	Phage	tail	sheath	C-terminal	domain
BLYB	PF05289.11	gi|384433862|ref|YP_005643220.1|	-	0.18	12.0	1.6	0.63	10.3	0.3	2.2	2	0	0	2	2	2	0	Borrelia	hemolysin	accessory	protein
Ribosomal_S13_N	PF08069.12	gi|384433863|ref|YP_005643221.1|	-	3.9e-24	84.4	0.3	1.2e-23	82.8	0.1	1.9	2	0	0	2	2	2	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|384433863|ref|YP_005643221.1|	-	4.4e-12	46.0	0.1	5.9e-12	45.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S15
CbiX	PF01903.17	gi|384433864|ref|YP_005643222.1|	-	5e-27	94.3	0.0	5.7e-27	94.1	0.0	1.0	1	0	0	1	1	1	1	CbiX
CbiK	PF06180.11	gi|384433864|ref|YP_005643222.1|	-	1.6e-05	24.4	0.0	1.9e-05	24.1	0.0	1.0	1	0	0	1	1	1	1	Cobalt	chelatase	(CbiK)
Ribosomal_S6e	PF01092.19	gi|384433865|ref|YP_005643223.1|	-	2.6e-29	101.7	1.3	1.3e-27	96.3	0.0	2.4	2	1	0	2	2	2	2	Ribosomal	protein	S6e
GTP_EFTU	PF00009.27	gi|384433866|ref|YP_005643224.1|	-	7.7e-31	107.1	0.2	3.4e-30	105.0	0.2	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|384433866|ref|YP_005643224.1|	-	4.2e-29	100.6	3.0	7.4e-29	99.8	1.7	2.1	2	0	0	2	2	2	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.25	gi|384433866|ref|YP_005643224.1|	-	7.7e-09	35.8	0.6	1.1e-07	32.1	0.1	2.6	2	1	1	3	3	3	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|384433866|ref|YP_005643224.1|	-	4.4e-05	23.5	0.0	7.8e-05	22.7	0.0	1.6	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|384433866|ref|YP_005643224.1|	-	4.9e-05	23.3	1.0	0.0015	18.5	0.0	2.6	3	0	0	3	3	3	1	RsgA	GTPase
PduV-EutP	PF10662.9	gi|384433866|ref|YP_005643224.1|	-	0.0008	19.2	1.1	1.2	8.9	0.1	2.8	3	0	0	3	3	3	2	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1_Xtn	PF16897.5	gi|384433866|ref|YP_005643224.1|	-	0.0029	17.6	0.1	0.0065	16.5	0.1	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
MeaB	PF03308.16	gi|384433866|ref|YP_005643224.1|	-	0.016	14.2	0.3	0.11	11.5	0.0	2.0	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ProQ_C	PF17516.2	gi|384433866|ref|YP_005643224.1|	-	0.026	13.9	0.6	0.18	11.3	0.0	2.6	3	0	0	3	3	3	0	ProQ	C-terminal	domain
NRDD	PF13597.6	gi|384433866|ref|YP_005643224.1|	-	0.029	13.2	0.1	0.28	9.9	0.1	1.9	2	0	0	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
FeoB_N	PF02421.18	gi|384433866|ref|YP_005643224.1|	-	0.041	13.4	0.4	6.4	6.3	0.0	2.7	3	0	0	3	3	3	0	Ferrous	iron	transport	protein	B
PIN_9	PF18477.1	gi|384433867|ref|YP_005643225.1|	-	6.6e-11	42.5	0.0	8.8e-11	42.1	0.0	1.1	1	0	0	1	1	1	1	PIN	like	domain
PIN	PF01850.21	gi|384433867|ref|YP_005643225.1|	-	2.4e-07	31.3	0.6	3.6e-07	30.7	0.6	1.2	1	0	0	1	1	1	1	PIN	domain
PIN_4	PF13638.6	gi|384433867|ref|YP_005643225.1|	-	0.00012	22.3	0.8	0.011	16.0	0.2	2.1	1	1	1	2	2	2	2	PIN	domain
S1	PF00575.23	gi|384433868|ref|YP_005643226.1|	-	4.2e-17	62.3	2.7	7.8e-17	61.4	2.7	1.4	1	0	0	1	1	1	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.17	gi|384433868|ref|YP_005643226.1|	-	1.8e-16	60.3	0.0	3.5e-16	59.3	0.0	1.5	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
RNA_pol_Rbc25	PF08292.12	gi|384433868|ref|YP_005643226.1|	-	0.004	17.4	0.0	0.0068	16.6	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	Rpc25
Spt4	PF06093.13	gi|384433869|ref|YP_005643227.1|	-	1.5e-14	53.8	0.5	1.8e-14	53.6	0.5	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
zf-ribbon_3	PF13248.6	gi|384433869|ref|YP_005643227.1|	-	0.00036	19.8	1.9	0.00049	19.4	1.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|384433869|ref|YP_005643227.1|	-	0.0011	19.0	2.1	0.0015	18.5	2.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RRN7	PF11781.8	gi|384433869|ref|YP_005643227.1|	-	0.0013	18.4	0.3	0.0013	18.4	0.3	1.8	1	1	1	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
RecR	PF02132.15	gi|384433869|ref|YP_005643227.1|	-	0.0031	17.0	1.0	0.0042	16.6	1.0	1.2	1	0	0	1	1	1	1	RecR	protein
zinc_ribbon_15	PF17032.5	gi|384433869|ref|YP_005643227.1|	-	0.0064	17.2	1.8	0.0083	16.9	1.8	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
TF_Zn_Ribbon	PF08271.12	gi|384433869|ref|YP_005643227.1|	-	0.011	15.3	3.3	0.071	12.6	0.3	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|384433869|ref|YP_005643227.1|	-	0.011	15.7	0.4	0.012	15.7	0.4	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C3HC4_3	PF13920.6	gi|384433869|ref|YP_005643227.1|	-	0.038	13.9	1.2	0.054	13.4	1.2	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zinc_ribbon_2	PF13240.6	gi|384433869|ref|YP_005643227.1|	-	0.061	13.1	2.5	0.088	12.6	2.5	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
NRDD	PF13597.6	gi|384433869|ref|YP_005643227.1|	-	0.062	12.1	0.7	0.07	11.9	0.7	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Zn-ribbon_8	PF09723.10	gi|384433869|ref|YP_005643227.1|	-	0.26	11.4	4.6	1.2	9.3	4.5	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF359	PF04019.12	gi|384433870|ref|YP_005643228.1|	-	4.3e-34	116.9	1.1	5.4e-34	116.5	1.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
BspA_v	PF18220.1	gi|384433870|ref|YP_005643228.1|	-	0.00067	19.8	0.5	0.0025	18.0	0.0	1.9	1	1	1	2	2	2	1	Adhesin	BspA	variable	domain
PhosphMutase	PF10143.9	gi|384433871|ref|YP_005643229.1|	-	1.6e-53	181.1	0.0	2.7e-53	180.3	0.0	1.4	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.18	gi|384433871|ref|YP_005643229.1|	-	3.8e-41	141.1	0.1	4.4e-41	140.9	0.1	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|384433871|ref|YP_005643229.1|	-	0.0017	18.1	0.0	0.003	17.2	0.0	1.4	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|384433871|ref|YP_005643229.1|	-	0.0031	17.0	0.0	0.0044	16.5	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
HEPPP_synt_1	PF07307.11	gi|384433871|ref|YP_005643229.1|	-	0.086	12.4	0.1	0.15	11.6	0.1	1.3	1	0	0	1	1	1	0	Heptaprenyl	diphosphate	synthase	(HEPPP	synthase)	subunit	1
AAA	PF00004.29	gi|384433872|ref|YP_005643230.1|	-	9.2e-101	333.5	0.0	5.8e-49	165.9	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|384433872|ref|YP_005643230.1|	-	8.7e-29	99.1	1.2	5.9e-16	58.0	0.1	2.9	2	1	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|384433872|ref|YP_005643230.1|	-	5e-21	74.7	1.4	2e-20	72.8	1.4	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.17	gi|384433872|ref|YP_005643230.1|	-	1.7e-17	63.0	0.1	7e-14	51.4	0.1	2.7	2	0	0	2	2	2	2	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|384433872|ref|YP_005643230.1|	-	4.2e-17	62.3	0.0	5.6e-09	35.9	0.0	3.0	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|384433872|ref|YP_005643230.1|	-	1.6e-15	57.6	0.0	1.4e-07	31.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.6	gi|384433872|ref|YP_005643230.1|	-	7.5e-14	52.5	0.2	5.4e-06	26.9	0.0	3.9	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_5	PF07728.14	gi|384433872|ref|YP_005643230.1|	-	2.2e-12	47.2	1.9	7.1e-05	22.8	0.1	4.5	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|384433872|ref|YP_005643230.1|	-	3.1e-12	46.9	0.5	0.0099	16.2	0.0	4.5	2	2	1	4	4	4	2	AAA	domain
TIP49	PF06068.13	gi|384433872|ref|YP_005643230.1|	-	1.7e-11	43.9	0.3	0.00018	20.9	0.0	3.3	3	1	1	4	4	4	2	TIP49	P-loop	domain
AAA_33	PF13671.6	gi|384433872|ref|YP_005643230.1|	-	1.1e-10	41.8	0.0	0.00075	19.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|384433872|ref|YP_005643230.1|	-	4.9e-10	39.6	0.0	0.00019	21.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|384433872|ref|YP_005643230.1|	-	2.8e-09	37.6	0.0	0.002	18.7	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
Vps4_C	PF09336.10	gi|384433872|ref|YP_005643230.1|	-	1.5e-08	34.5	2.9	0.00098	19.1	0.1	3.1	3	0	0	3	3	2	2	Vps4	C	terminal	oligomerisation	domain
IstB_IS21	PF01695.17	gi|384433872|ref|YP_005643230.1|	-	1.6e-08	34.5	0.0	0.0078	16.0	0.0	2.8	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|384433872|ref|YP_005643230.1|	-	1.5e-07	31.0	0.7	0.0083	15.5	0.1	2.8	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.22	gi|384433872|ref|YP_005643230.1|	-	1.9e-07	31.4	0.0	0.0053	17.1	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_28	PF13521.6	gi|384433872|ref|YP_005643230.1|	-	3e-07	30.8	0.0	0.037	14.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|384433872|ref|YP_005643230.1|	-	2e-06	27.7	0.0	0.077	12.7	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
TsaE	PF02367.17	gi|384433872|ref|YP_005643230.1|	-	2.4e-06	27.6	0.1	0.092	12.8	0.0	2.8	2	1	1	3	3	3	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_25	PF13481.6	gi|384433872|ref|YP_005643230.1|	-	3.2e-06	26.8	3.6	0.2	11.2	0.3	3.8	2	2	1	3	3	3	2	AAA	domain
NACHT	PF05729.12	gi|384433872|ref|YP_005643230.1|	-	4.5e-06	26.7	0.3	0.24	11.3	0.0	3.7	3	1	1	4	4	4	2	NACHT	domain
Sigma54_activat	PF00158.26	gi|384433872|ref|YP_005643230.1|	-	6.3e-06	26.0	0.8	0.79	9.4	0.0	4.6	4	1	0	4	4	3	2	Sigma-54	interaction	domain
AAA_3	PF07726.11	gi|384433872|ref|YP_005643230.1|	-	7.4e-06	25.8	0.0	0.045	13.6	0.0	2.9	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|384433872|ref|YP_005643230.1|	-	9.5e-06	26.2	0.1	0.93	10.0	0.0	3.6	3	0	0	3	3	3	2	ABC	transporter
DUF815	PF05673.13	gi|384433872|ref|YP_005643230.1|	-	1.4e-05	24.4	0.0	0.063	12.4	0.0	2.6	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.18	gi|384433872|ref|YP_005643230.1|	-	2.2e-05	24.4	0.0	0.0086	15.9	0.0	3.4	2	2	1	3	3	3	1	Bacterial	dnaA	protein
ATPase_2	PF01637.18	gi|384433872|ref|YP_005643230.1|	-	3e-05	24.1	0.0	0.05	13.5	0.0	3.5	2	1	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|384433872|ref|YP_005643230.1|	-	4.1e-05	23.2	0.0	0.45	10.0	0.0	2.9	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Molydop_binding	PF01568.21	gi|384433872|ref|YP_005643230.1|	-	4.5e-05	23.4	0.2	0.00021	21.3	0.1	2.2	2	0	0	2	2	1	1	Molydopterin	dinucleotide	binding	domain
Zeta_toxin	PF06414.12	gi|384433872|ref|YP_005643230.1|	-	9.9e-05	21.7	0.1	0.23	10.7	0.0	2.7	2	0	0	2	2	2	2	Zeta	toxin
ATPase	PF06745.13	gi|384433872|ref|YP_005643230.1|	-	0.00027	20.4	7.8	0.46	9.8	0.0	4.9	5	0	0	5	5	5	1	KaiC
Parvo_NS1	PF01057.17	gi|384433872|ref|YP_005643230.1|	-	0.00036	19.7	0.1	0.8	8.7	0.0	2.4	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
AAA_17	PF13207.6	gi|384433872|ref|YP_005643230.1|	-	0.00049	20.5	0.0	0.64	10.4	0.0	2.9	2	0	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|384433872|ref|YP_005643230.1|	-	0.0005	19.9	0.5	0.45	10.3	0.4	3.0	2	1	0	2	2	2	1	AAA	domain
PhoH	PF02562.16	gi|384433872|ref|YP_005643230.1|	-	0.00074	19.0	0.5	0.43	10.0	0.1	3.0	2	0	0	2	2	2	1	PhoH-like	protein
Sigma54_activ_2	PF14532.6	gi|384433872|ref|YP_005643230.1|	-	0.0016	18.5	0.0	1.1	9.4	0.0	2.7	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Rad17	PF03215.15	gi|384433872|ref|YP_005643230.1|	-	0.0024	17.8	0.0	4	7.3	0.0	3.2	2	1	0	2	2	2	0	Rad17	P-loop	domain
TniB	PF05621.11	gi|384433872|ref|YP_005643230.1|	-	0.0048	16.3	0.1	4	6.8	0.0	3.8	5	0	0	5	5	3	0	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|384433872|ref|YP_005643230.1|	-	0.0052	16.0	0.5	1.7	7.8	0.0	2.7	3	0	0	3	3	2	1	NB-ARC	domain
AFG1_ATPase	PF03969.16	gi|384433872|ref|YP_005643230.1|	-	0.0057	15.6	0.0	2.9	6.7	0.0	2.6	2	0	0	2	2	2	1	AFG1-like	ATPase
AAA_30	PF13604.6	gi|384433872|ref|YP_005643230.1|	-	0.01	15.5	1.0	3.1	7.4	0.1	2.9	3	0	0	3	3	2	0	AAA	domain
AAA_19	PF13245.6	gi|384433872|ref|YP_005643230.1|	-	0.011	16.1	3.1	3.3	8.0	0.0	3.5	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|384433872|ref|YP_005643230.1|	-	0.013	15.2	0.1	14	5.5	0.0	3.7	4	0	0	4	4	3	0	P-loop	containing	region	of	AAA	domain
DUF2075	PF09848.9	gi|384433872|ref|YP_005643230.1|	-	0.014	14.7	0.0	2.1	7.5	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Guanylate_kin	PF00625.21	gi|384433872|ref|YP_005643230.1|	-	0.023	14.4	0.1	13	5.4	0.0	3.7	2	2	2	4	4	4	0	Guanylate	kinase
IPT	PF01745.16	gi|384433872|ref|YP_005643230.1|	-	0.026	13.9	0.2	1.4	8.2	0.1	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
NTPase_1	PF03266.15	gi|384433872|ref|YP_005643230.1|	-	0.031	14.2	3.8	13	5.6	0.0	4.2	3	1	1	4	4	3	0	NTPase
ATP-synt_ab	PF00006.25	gi|384433872|ref|YP_005643230.1|	-	0.035	13.8	0.0	0.95	9.1	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Viral_helicase1	PF01443.18	gi|384433872|ref|YP_005643230.1|	-	0.038	13.7	0.0	3.3	7.4	0.0	2.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
PduV-EutP	PF10662.9	gi|384433872|ref|YP_005643230.1|	-	0.039	13.7	0.0	10	5.8	0.0	2.6	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
SKI	PF01202.22	gi|384433872|ref|YP_005643230.1|	-	0.05	13.7	0.0	13	5.9	0.0	2.7	2	0	0	2	2	2	0	Shikimate	kinase
Cytidylate_kin	PF02224.18	gi|384433872|ref|YP_005643230.1|	-	0.05	13.3	2.1	6.4	6.5	0.0	3.3	4	0	0	4	4	3	0	Cytidylate	kinase
MMR_HSR1	PF01926.23	gi|384433872|ref|YP_005643230.1|	-	0.059	13.5	0.0	2.9	8.0	0.0	2.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
T2SSE	PF00437.20	gi|384433872|ref|YP_005643230.1|	-	0.084	11.9	0.0	5.2	6.1	0.0	2.6	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Cytidylate_kin2	PF13189.6	gi|384433872|ref|YP_005643230.1|	-	0.087	13.0	0.0	12	6.0	0.0	2.6	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Topoisom_bac	PF01131.20	gi|384433873|ref|YP_005643231.1|	-	2.5e-71	240.8	6.0	4e-71	240.2	6.0	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|384433873|ref|YP_005643231.1|	-	1.6e-26	92.5	0.1	1e-25	89.9	0.1	2.5	2	0	0	2	2	2	1	Toprim	domain
DEAD	PF00270.29	gi|384433873|ref|YP_005643231.1|	-	4.6e-13	49.3	0.1	9.9e-12	45.0	0.0	2.7	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
zf_Rg	PF17915.1	gi|384433873|ref|YP_005643231.1|	-	7.6e-10	38.0	0.7	7.6e-10	38.0	0.7	2.6	3	0	0	3	3	3	1	Reverse	gyrase	zinc	finger
Helicase_C	PF00271.31	gi|384433873|ref|YP_005643231.1|	-	6.8e-08	32.8	0.7	0.024	14.9	0.1	5.0	5	0	0	5	5	4	2	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|384433873|ref|YP_005643231.1|	-	2.4e-05	24.4	1.1	7.5e-05	22.8	0.1	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
zf-ribbon_3	PF13248.6	gi|384433873|ref|YP_005643231.1|	-	0.0012	18.1	1.1	1.4	8.4	0.1	2.5	2	0	0	2	2	2	2	zinc-ribbon	domain
AAA_11	PF13086.6	gi|384433873|ref|YP_005643231.1|	-	0.03	14.1	0.0	0.11	12.2	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|384433873|ref|YP_005643231.1|	-	0.13	11.8	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DNA_ligase_ZBD	PF03119.16	gi|384433873|ref|YP_005643231.1|	-	0.24	11.4	2.3	0.69	10.0	0.1	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.19	gi|384433873|ref|YP_005643231.1|	-	1.6	8.6	4.6	25	4.8	0.1	2.6	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.10	gi|384433873|ref|YP_005643231.1|	-	2.9	8.1	4.8	22	5.3	0.3	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384433873|ref|YP_005643231.1|	-	3.6	7.2	7.0	4.3	6.9	0.2	2.7	2	0	0	2	2	2	0	TFIIB	zinc-binding
CN_hydrolase	PF00795.22	gi|384433874|ref|YP_005643232.1|	-	7.9e-24	84.4	0.0	1e-23	84.0	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Ribosomal_S25	PF03297.15	gi|384433875|ref|YP_005643233.1|	-	1.7e-22	79.5	10.9	2e-22	79.3	10.9	1.0	1	0	0	1	1	1	1	S25	ribosomal	protein
HTH_24	PF13412.6	gi|384433875|ref|YP_005643233.1|	-	2.8e-07	30.0	1.3	3e-07	29.9	0.4	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|384433875|ref|YP_005643233.1|	-	0.0057	17.0	1.1	0.055	13.8	0.3	2.1	1	1	1	2	2	2	1	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|384433875|ref|YP_005643233.1|	-	0.0067	16.3	0.6	0.0067	16.3	0.6	1.8	2	0	0	2	2	2	1	TFIIE	alpha	subunit
MarR	PF01047.22	gi|384433875|ref|YP_005643233.1|	-	0.0094	15.9	0.1	0.015	15.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|384433875|ref|YP_005643233.1|	-	0.011	15.7	0.8	0.011	15.7	0.8	1.6	2	0	0	2	2	2	0	HTH	domain
FANCI_S2	PF14676.6	gi|384433875|ref|YP_005643233.1|	-	0.041	14.2	1.0	0.051	13.9	1.0	1.3	1	1	0	1	1	1	0	FANCI	solenoid	2
HTH_Crp_2	PF13545.6	gi|384433875|ref|YP_005643233.1|	-	0.053	13.5	0.2	0.18	11.8	0.1	1.8	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|384433875|ref|YP_005643233.1|	-	0.053	13.4	0.5	0.098	12.6	0.4	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
WAPL	PF07814.13	gi|384433875|ref|YP_005643233.1|	-	0.18	10.5	2.3	0.22	10.3	2.3	1.1	1	0	0	1	1	1	0	Wings	apart-like	protein	regulation	of	heterochromatin
TrmB	PF01978.19	gi|384433876|ref|YP_005643234.1|	-	9.1e-22	76.7	0.2	1.6e-21	75.9	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.16	gi|384433876|ref|YP_005643234.1|	-	0.0012	19.2	0.0	0.0025	18.2	0.0	1.6	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_9	PF08221.11	gi|384433876|ref|YP_005643234.1|	-	0.0018	18.3	0.0	0.0043	17.1	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|384433876|ref|YP_005643234.1|	-	0.062	13.1	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|384433876|ref|YP_005643234.1|	-	0.077	13.5	0.0	0.15	12.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RHH_1	PF01402.21	gi|384433877|ref|YP_005643235.1|	-	1.9e-08	34.0	0.0	2.4e-08	33.6	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParD_antitoxin	PF03693.14	gi|384433877|ref|YP_005643235.1|	-	3.8e-06	27.2	0.0	3.8e-06	27.2	0.0	1.1	1	0	0	1	1	1	1	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
RHH_8	PF17723.1	gi|384433877|ref|YP_005643235.1|	-	0.0002	21.5	0.0	0.0002	21.5	0.0	1.1	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
HicB_lk_antitox	PF15919.5	gi|384433877|ref|YP_005643235.1|	-	0.094	12.8	0.0	0.1	12.7	0.0	1.1	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
GCD14	PF08704.10	gi|384433878|ref|YP_005643236.1|	-	1e-32	113.8	0.0	1.4e-32	113.4	0.0	1.0	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|384433878|ref|YP_005643236.1|	-	1.5e-11	44.3	0.0	1.9e-11	44.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.17	gi|384433878|ref|YP_005643236.1|	-	5.1e-07	29.1	0.1	8.6e-07	28.3	0.0	1.4	2	0	0	2	2	2	1	O-methyltransferase
PCMT	PF01135.19	gi|384433878|ref|YP_005643236.1|	-	1.1e-06	28.5	0.0	1.6e-06	28.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|384433878|ref|YP_005643236.1|	-	3.2e-06	26.8	0.3	6.1e-06	25.8	0.3	1.6	1	1	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|384433878|ref|YP_005643236.1|	-	3.2e-05	24.6	0.0	4.8e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384433878|ref|YP_005643236.1|	-	6.3e-05	22.6	0.0	9.4e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.6	gi|384433878|ref|YP_005643236.1|	-	0.00011	22.2	0.0	0.00015	21.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14_N	PF14801.6	gi|384433878|ref|YP_005643236.1|	-	0.00013	21.7	0.0	0.00024	20.9	0.0	1.4	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit	N-term
Methyltransf_16	PF10294.9	gi|384433878|ref|YP_005643236.1|	-	0.00033	20.5	0.0	0.0005	19.9	0.0	1.4	1	1	0	1	1	1	1	Lysine	methyltransferase
Methyltransf_18	PF12847.7	gi|384433878|ref|YP_005643236.1|	-	0.00051	20.0	0.0	0.001	19.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|384433878|ref|YP_005643236.1|	-	0.00073	19.1	0.1	0.0039	16.8	0.0	1.9	1	1	1	2	2	2	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_24	PF13578.6	gi|384433878|ref|YP_005643236.1|	-	0.0012	19.9	0.0	0.0023	18.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|384433878|ref|YP_005643236.1|	-	0.0014	19.3	0.0	0.0021	18.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|384433878|ref|YP_005643236.1|	-	0.0025	17.5	0.0	0.0047	16.6	0.0	1.4	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Ubie_methyltran	PF01209.18	gi|384433878|ref|YP_005643236.1|	-	0.0091	15.4	0.0	0.012	15.0	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.20	gi|384433878|ref|YP_005643236.1|	-	0.03	13.4	0.0	0.044	12.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Helicase_C	PF00271.31	gi|384433878|ref|YP_005643236.1|	-	0.048	14.0	0.4	4.2	7.8	0.0	2.4	1	1	1	2	2	2	0	Helicase	conserved	C-terminal	domain
Methyltransf_23	PF13489.6	gi|384433878|ref|YP_005643236.1|	-	0.051	13.4	0.0	0.093	12.6	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|384433878|ref|YP_005643236.1|	-	0.064	12.9	0.0	0.091	12.4	0.0	1.2	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
TRM	PF02005.16	gi|384433878|ref|YP_005643236.1|	-	0.11	11.7	0.0	0.12	11.5	0.0	1.1	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_4	PF02390.17	gi|384433878|ref|YP_005643236.1|	-	0.11	12.0	0.0	0.24	10.9	0.0	1.6	1	0	0	1	1	1	0	Putative	methyltransferase
OmpH	PF03938.14	gi|384433879|ref|YP_005643237.1|	-	0.0023	18.2	8.8	0.0031	17.8	8.8	1.1	1	0	0	1	1	1	1	Outer	membrane	protein	(OmpH-like)
V-ATPase_G_2	PF16999.5	gi|384433879|ref|YP_005643237.1|	-	0.018	15.5	6.0	0.065	13.6	6.0	1.8	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
PNPase	PF03726.14	gi|384433879|ref|YP_005643237.1|	-	0.021	15.3	4.1	0.021	15.3	4.1	1.7	2	0	0	2	2	2	0	Polyribonucleotide	nucleotidyltransferase,	RNA	binding	domain
Focal_AT	PF03623.13	gi|384433879|ref|YP_005643237.1|	-	0.024	14.6	1.9	0.033	14.2	1.9	1.3	1	0	0	1	1	1	0	Focal	adhesion	targeting	region
DUF3435	PF11917.8	gi|384433879|ref|YP_005643237.1|	-	0.03	13.3	2.7	0.031	13.2	2.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
FAM184	PF15665.5	gi|384433879|ref|YP_005643237.1|	-	0.041	13.6	7.5	0.43	10.3	7.5	2.0	1	1	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
DUF4407	PF14362.6	gi|384433879|ref|YP_005643237.1|	-	0.058	12.8	4.1	0.072	12.4	4.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
AbiH	PF14253.6	gi|384433879|ref|YP_005643237.1|	-	0.059	13.2	4.4	0.073	12.9	4.4	1.1	1	0	0	1	1	1	0	Bacteriophage	abortive	infection	AbiH
Sec15	PF04091.12	gi|384433879|ref|YP_005643237.1|	-	0.067	12.6	3.9	0.11	11.9	0.9	1.9	1	1	1	2	2	2	0	Exocyst	complex	subunit	Sec15-like
DUF4455	PF14643.6	gi|384433879|ref|YP_005643237.1|	-	0.074	11.7	9.3	0.17	10.5	9.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4455)
DUF826	PF05696.11	gi|384433879|ref|YP_005643237.1|	-	0.1	12.7	1.3	0.2	11.8	0.6	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF826)
Ntox15	PF15604.6	gi|384433879|ref|YP_005643237.1|	-	0.12	12.5	4.3	0.15	12.2	4.3	1.1	1	0	0	1	1	1	0	Novel	toxin	15
V-ATPase_G	PF03179.15	gi|384433879|ref|YP_005643237.1|	-	0.13	12.8	8.8	0.28	11.7	4.5	2.2	1	1	1	2	2	2	0	Vacuolar	(H+)-ATPase	G	subunit
MEDS	PF14417.6	gi|384433879|ref|YP_005643237.1|	-	0.13	12.1	0.4	0.15	11.9	0.4	1.1	1	0	0	1	1	1	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
DUF883	PF05957.13	gi|384433879|ref|YP_005643237.1|	-	0.13	12.9	5.7	0.59	10.8	1.2	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
MtaB	PF12176.8	gi|384433879|ref|YP_005643237.1|	-	0.18	10.6	1.7	0.2	10.4	1.7	1.1	1	0	0	1	1	1	0	Methanol-cobalamin	methyltransferase	B	subunit
DIX	PF00778.17	gi|384433879|ref|YP_005643237.1|	-	0.18	11.6	1.5	0.41	10.5	0.1	2.2	2	1	1	3	3	3	0	DIX	domain
GCR	PF02155.15	gi|384433879|ref|YP_005643237.1|	-	0.2	10.7	0.5	0.24	10.4	0.5	1.1	1	0	0	1	1	1	0	Glucocorticoid	receptor
Fib_alpha	PF08702.10	gi|384433879|ref|YP_005643237.1|	-	0.21	11.8	8.0	1.2	9.3	3.6	2.0	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Peptidase_S46	PF10459.9	gi|384433879|ref|YP_005643237.1|	-	0.21	10.2	4.3	0.25	9.9	4.3	1.0	1	0	0	1	1	1	0	Peptidase	S46
Uds1	PF15456.6	gi|384433879|ref|YP_005643237.1|	-	0.55	10.4	7.3	0.69	10.1	7.3	1.1	1	0	0	1	1	1	0	Up-regulated	During	Septation
DUF5401	PF17380.2	gi|384433879|ref|YP_005643237.1|	-	0.72	7.8	10.1	0.83	7.6	10.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5401)
TMPIT	PF07851.13	gi|384433879|ref|YP_005643237.1|	-	0.75	9.0	4.5	1	8.5	4.5	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
CorA	PF01544.18	gi|384433879|ref|YP_005643237.1|	-	1.1	8.5	7.1	1.4	8.1	7.1	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
YgaB	PF14182.6	gi|384433879|ref|YP_005643237.1|	-	1.4	9.4	11.0	0.82	10.1	5.5	2.1	1	1	1	2	2	2	0	YgaB-like	protein
Ribosomal_L29	PF00831.23	gi|384433879|ref|YP_005643237.1|	-	2.6	8.1	11.1	2	8.5	1.3	3.2	2	1	1	3	3	3	0	Ribosomal	L29	protein
YtxH	PF12732.7	gi|384433879|ref|YP_005643237.1|	-	5.5	7.6	7.3	1.1e+02	3.4	7.3	2.2	1	1	0	1	1	1	0	YtxH-like	protein
pRN1_helical	PF13010.6	gi|384433879|ref|YP_005643237.1|	-	7.4	6.5	10.0	1.8	8.5	5.3	1.9	1	1	1	2	2	2	0	Primase	helical	domain
vATP-synt_AC39	PF01992.16	gi|384433880|ref|YP_005643238.1|	-	2e-19	70.3	10.1	2.3e-19	70.1	10.1	1.1	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
DUF4368	PF14287.6	gi|384433880|ref|YP_005643238.1|	-	0.065	13.5	0.4	2.8	8.3	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4368)
LAGLIDADG_1	PF00961.19	gi|384433880|ref|YP_005643238.1|	-	1.5	9.8	10.6	0.35	11.9	3.9	3.2	1	1	2	3	3	3	0	LAGLIDADG	endonuclease
ER	PF01133.17	gi|384433880|ref|YP_005643238.1|	-	2.7	8.1	7.0	1.4	9.0	0.8	2.9	2	1	1	3	3	3	0	Enhancer	of	rudimentary
Aldo_ket_red	PF00248.21	gi|384433882|ref|YP_005643240.1|	-	2.2e-45	155.1	0.1	2.8e-45	154.8	0.1	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Ham1p_like	PF01725.16	gi|384433883|ref|YP_005643241.1|	-	8.5e-47	159.5	0.0	9.5e-47	159.3	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
Pkinase	PF00069.25	gi|384433884|ref|YP_005643242.1|	-	1.5e-10	40.9	0.2	1.8e-10	40.7	0.2	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.14	gi|384433884|ref|YP_005643242.1|	-	2.5e-08	33.5	0.0	4.1e-08	32.8	0.0	1.4	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|384433884|ref|YP_005643242.1|	-	1.4e-07	31.7	0.0	0.0092	15.9	0.2	2.2	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase_Tyr	PF07714.17	gi|384433884|ref|YP_005643242.1|	-	9.7e-07	28.3	0.0	1.2e-06	28.1	0.0	1.1	1	0	0	1	1	1	1	Protein	tyrosine	kinase
RIO1	PF01163.22	gi|384433884|ref|YP_005643242.1|	-	3.3e-06	26.8	0.1	4.8e-06	26.3	0.1	1.3	1	0	0	1	1	1	1	RIO1	family
EcKinase	PF02958.20	gi|384433884|ref|YP_005643242.1|	-	3.5e-05	23.3	0.0	4.8e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	Ecdysteroid	kinase
Choline_kinase	PF01633.20	gi|384433884|ref|YP_005643242.1|	-	0.00014	21.5	0.1	0.00042	20.0	0.1	1.6	1	1	1	2	2	2	1	Choline/ethanolamine	kinase
Pkinase_fungal	PF17667.1	gi|384433884|ref|YP_005643242.1|	-	0.09	11.5	0.3	0.12	11.1	0.3	1.2	1	0	0	1	1	1	0	Fungal	protein	kinase
Peptidase_M22	PF00814.25	gi|384433885|ref|YP_005643243.1|	-	1.9e-73	247.5	0.0	2.4e-73	247.2	0.0	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Carbam_trans_N	PF02543.15	gi|384433885|ref|YP_005643243.1|	-	0.0032	17.2	0.0	0.016	14.9	0.0	1.9	2	0	0	2	2	2	1	Carbamoyltransferase	N-terminus
Ribosomal_S27	PF01599.19	gi|384433886|ref|YP_005643244.1|	-	4.2e-14	52.4	2.3	5.8e-14	52.0	2.3	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Zn_Tnp_IS1595	PF12760.7	gi|384433886|ref|YP_005643244.1|	-	0.00015	21.6	2.0	0.00019	21.4	2.0	1.3	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433886|ref|YP_005643244.1|	-	0.00024	21.0	1.0	0.00028	20.7	1.0	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_ribbon_SprT	PF17283.2	gi|384433886|ref|YP_005643244.1|	-	0.0013	18.6	0.6	0.0019	18.1	0.6	1.3	1	0	0	1	1	1	1	SprT-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384433886|ref|YP_005643244.1|	-	0.0039	16.9	3.8	0.069	12.9	0.3	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
FAM72	PF14976.6	gi|384433886|ref|YP_005643244.1|	-	0.0067	16.6	0.3	0.0072	16.5	0.3	1.1	1	0	0	1	1	1	1	FAM72	protein
Lar_restr_allev	PF14354.6	gi|384433886|ref|YP_005643244.1|	-	0.0094	16.3	1.0	0.013	15.8	1.0	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
RNA_POL_M_15KD	PF02150.16	gi|384433886|ref|YP_005643244.1|	-	0.012	15.4	0.3	0.024	14.5	0.3	1.6	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
UPF0179	PF03684.13	gi|384433886|ref|YP_005643244.1|	-	0.016	15.1	0.3	0.018	14.9	0.3	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0179)
Nudix_N_2	PF14803.6	gi|384433886|ref|YP_005643244.1|	-	0.02	14.8	1.8	0.05	13.5	1.8	1.7	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_13	PF09855.9	gi|384433886|ref|YP_005643244.1|	-	0.034	14.3	1.7	0.29	11.3	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
GFA	PF04828.14	gi|384433886|ref|YP_005643244.1|	-	0.049	14.0	1.2	0.78	10.1	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
HalOD2	PF18547.1	gi|384433886|ref|YP_005643244.1|	-	0.067	13.1	1.5	1.9	8.5	0.2	2.1	2	0	0	2	2	2	0	Halobacterial	output	domain	2
zf_UBZ	PF18439.1	gi|384433886|ref|YP_005643244.1|	-	0.069	12.8	2.1	0.42	10.3	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF1451	PF07295.11	gi|384433886|ref|YP_005643244.1|	-	0.074	13.1	0.3	0.08	13.0	0.3	1.1	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
YhfH	PF14149.6	gi|384433886|ref|YP_005643244.1|	-	0.075	13.0	0.5	0.075	13.0	0.5	2.1	2	0	0	2	2	2	0	YhfH-like	protein
FlhC	PF05280.11	gi|384433886|ref|YP_005643244.1|	-	0.086	12.5	0.2	0.087	12.5	0.2	1.1	1	0	0	1	1	1	0	Flagellar	transcriptional	activator	(FlhC)
ADK_lid	PF05191.14	gi|384433886|ref|YP_005643244.1|	-	0.14	12.2	3.4	6.9	6.7	0.6	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
UPF0547	PF10571.9	gi|384433886|ref|YP_005643244.1|	-	0.2	11.8	4.1	0.5	10.5	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf_C2H2_10	PF18414.1	gi|384433886|ref|YP_005643244.1|	-	0.25	10.9	2.2	4.4	6.9	0.1	2.1	2	0	0	2	2	2	0	C2H2	type	zinc-finger
zf-ribbon_3	PF13248.6	gi|384433886|ref|YP_005643244.1|	-	0.32	10.4	6.2	0.34	10.4	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384433886|ref|YP_005643244.1|	-	0.85	9.8	4.3	1.1	9.5	0.4	2.1	1	1	2	3	3	3	0	Zinc	ribbon	domain
Mu-like_Com	PF10122.9	gi|384433886|ref|YP_005643244.1|	-	1.1	8.8	5.9	0.17	11.4	0.8	1.9	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
Ribosomal_S24e	PF01282.19	gi|384433887|ref|YP_005643245.1|	-	6.6e-21	74.0	0.1	9.3e-21	73.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Thi4	PF01946.17	gi|384433888|ref|YP_005643246.1|	-	1.7e-83	279.4	2.4	2e-83	279.2	2.4	1.0	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.24	gi|384433888|ref|YP_005643246.1|	-	6.6e-15	55.5	5.1	8.9e-09	35.4	0.7	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|384433888|ref|YP_005643246.1|	-	2.2e-10	40.5	1.9	2.8e-10	40.1	1.9	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|384433888|ref|YP_005643246.1|	-	6.8e-10	39.0	0.5	2.7e-09	37.1	0.5	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|384433888|ref|YP_005643246.1|	-	5.3e-09	35.7	7.3	1.6e-06	27.5	1.3	3.0	3	0	0	3	3	3	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384433888|ref|YP_005643246.1|	-	3.8e-08	32.9	0.4	4.9e-08	32.6	0.4	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|384433888|ref|YP_005643246.1|	-	7.4e-07	28.7	0.1	1.2e-06	28.1	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|384433888|ref|YP_005643246.1|	-	1.3e-05	24.1	0.2	1.7e-05	23.7	0.2	1.3	1	0	0	1	1	1	1	HI0933-like	protein
GIDA	PF01134.22	gi|384433888|ref|YP_005643246.1|	-	4.4e-05	22.8	0.6	9.1e-05	21.7	0.6	1.5	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.27	gi|384433888|ref|YP_005643246.1|	-	0.00018	22.0	0.2	0.00087	19.8	0.2	2.4	2	1	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384433888|ref|YP_005643246.1|	-	0.00019	20.8	0.0	0.00033	20.0	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|384433888|ref|YP_005643246.1|	-	0.0005	19.5	0.2	0.00083	18.8	0.2	1.3	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
K_oxygenase	PF13434.6	gi|384433888|ref|YP_005643246.1|	-	0.0044	16.2	0.0	0.0083	15.3	0.0	1.4	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.12	gi|384433888|ref|YP_005643246.1|	-	0.02	13.9	1.3	0.039	13.0	0.1	1.9	2	1	0	2	2	2	0	Lycopene	cyclase	protein
ThiF	PF00899.21	gi|384433888|ref|YP_005643246.1|	-	0.035	13.5	0.0	0.082	12.2	0.0	1.5	1	0	0	1	1	1	0	ThiF	family
NAD_binding_9	PF13454.6	gi|384433888|ref|YP_005643246.1|	-	0.057	13.4	1.3	0.11	12.5	0.2	2.1	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.14	gi|384433888|ref|YP_005643246.1|	-	0.074	11.9	3.0	0.39	9.5	0.7	2.2	2	1	0	2	2	2	0	Tryptophan	halogenase
GMC_oxred_N	PF00732.19	gi|384433888|ref|YP_005643246.1|	-	0.14	11.5	0.0	0.26	10.6	0.0	1.3	1	0	0	1	1	1	0	GMC	oxidoreductase
Flavoprotein	PF02441.19	gi|384433889|ref|YP_005643247.1|	-	1.8e-26	92.8	0.1	2.3e-26	92.4	0.1	1.1	1	0	0	1	1	1	1	Flavoprotein
Glyco_trans_4_2	PF13477.6	gi|384433889|ref|YP_005643247.1|	-	0.021	14.9	0.0	0.033	14.2	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
DUF2083	PF09856.9	gi|384433891|ref|YP_005643249.1|	-	0.27	11.1	2.3	1.9	8.3	0.1	2.1	1	1	1	2	2	2	0	Predicted	transcriptional	regulator	(DUF2083)
tRNA_int_endo	PF01974.17	gi|384433892|ref|YP_005643250.1|	-	1.9e-28	98.4	0.3	4.1e-28	97.3	0.1	1.6	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|384433892|ref|YP_005643250.1|	-	1.9e-20	72.3	0.2	3.7e-19	68.1	0.1	2.1	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	N-terminal	domain
Rrp40_N	PF18311.1	gi|384433892|ref|YP_005643250.1|	-	0.16	11.9	0.0	0.3	11.1	0.0	1.4	1	0	0	1	1	1	0	Exosome	complex	exonuclease	Rrp40	N-terminal	domain
PhoU_div	PF01865.16	gi|384433893|ref|YP_005643251.1|	-	0.00012	21.5	9.5	0.012	15.0	2.8	2.4	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF47
Arg_decarb_HB	PF17810.1	gi|384433893|ref|YP_005643251.1|	-	0.062	13.6	0.7	0.74	10.1	0.1	2.5	2	1	0	2	2	2	0	Arginine	decarboxylase	helical	bundle	domain
PhoU	PF01895.19	gi|384433893|ref|YP_005643251.1|	-	0.29	11.6	7.1	0.17	12.3	2.1	2.9	1	1	1	2	2	2	0	PhoU	domain
HGTP_anticodon	PF03129.20	gi|384433894|ref|YP_005643252.1|	-	0.041	14.0	1.2	0.21	11.8	1.3	1.9	1	1	0	1	1	1	0	Anticodon	binding	domain
Molydop_binding	PF01568.21	gi|384433895|ref|YP_005643253.1|	-	4.4e-05	23.5	0.0	0.083	12.9	0.0	2.1	1	1	1	2	2	2	2	Molydopterin	dinucleotide	binding	domain
HGTP_anticodon	PF03129.20	gi|384433896|ref|YP_005643254.1|	-	9.2e-19	67.4	1.1	1.6e-18	66.6	0.2	2.0	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|384433896|ref|YP_005643254.1|	-	1.2e-07	31.9	1.2	9.5e-07	29.0	0.1	2.6	3	0	0	3	3	3	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zf-RING_7	PF02591.15	gi|384433896|ref|YP_005643254.1|	-	0.067	13.4	1.0	10	6.4	0.1	2.8	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zf-BED	PF02892.15	gi|384433896|ref|YP_005643254.1|	-	0.089	12.8	0.2	2.3	8.3	0.0	2.5	2	0	0	2	2	2	0	BED	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|384433896|ref|YP_005643254.1|	-	2.2	8.0	4.5	0.39	10.4	0.3	1.9	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Arginase	PF00491.21	gi|384433897|ref|YP_005643255.1|	-	1.5e-73	247.8	0.0	1.8e-73	247.5	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
DNA_RNApol_7kD	PF03604.13	gi|384433898|ref|YP_005643256.1|	-	9.2e-06	25.2	2.5	1.9e-05	24.3	2.5	1.5	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2072	PF09845.9	gi|384433898|ref|YP_005643256.1|	-	0.00058	20.1	0.4	0.00062	20.0	0.4	1.0	1	0	0	1	1	1	1	Zn-ribbon	containing	protein
zf-C2H2	PF00096.26	gi|384433898|ref|YP_005643256.1|	-	0.0017	18.7	3.5	0.1	13.1	0.3	2.1	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
Zn-ribbon_8	PF09723.10	gi|384433898|ref|YP_005643256.1|	-	0.0023	18.0	0.3	0.0032	17.5	0.3	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|384433898|ref|YP_005643256.1|	-	0.015	15.3	0.1	0.015	15.3	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Baculo_IE-1	PF05290.11	gi|384433898|ref|YP_005643256.1|	-	0.021	14.8	0.4	0.022	14.7	0.4	1.1	1	0	0	1	1	1	0	Baculovirus	immediate-early	protein	(IE-0)
zinc_ribbon_4	PF13717.6	gi|384433898|ref|YP_005643256.1|	-	0.045	13.7	1.6	4.6	7.2	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384433898|ref|YP_005643256.1|	-	0.047	13.7	1.8	0.28	11.2	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_5	PF13719.6	gi|384433898|ref|YP_005643256.1|	-	0.049	13.4	3.2	3.1	7.6	0.5	2.3	1	1	2	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|384433898|ref|YP_005643256.1|	-	0.093	12.2	0.7	0.093	12.2	0.7	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384433898|ref|YP_005643256.1|	-	0.15	11.8	0.4	0.15	11.8	0.4	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|384433898|ref|YP_005643256.1|	-	0.21	12.1	2.9	2.1	8.9	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-BED	PF02892.15	gi|384433898|ref|YP_005643256.1|	-	0.64	10.1	3.8	6.6	6.8	0.2	2.1	1	1	1	2	2	2	0	BED	zinc	finger
SUI1	PF01253.22	gi|384433899|ref|YP_005643257.1|	-	4.6e-21	75.1	1.5	5.7e-21	74.8	1.5	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|384433899|ref|YP_005643257.1|	-	0.0015	18.8	0.9	0.002	18.4	0.9	1.3	1	0	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
P-mevalo_kinase	PF04275.14	gi|384433899|ref|YP_005643257.1|	-	0.0056	16.6	0.1	0.0084	16.0	0.1	1.3	1	1	0	1	1	1	1	Phosphomevalonate	kinase
TFIIB	PF00382.19	gi|384433900|ref|YP_005643258.1|	-	5e-38	129.0	4.8	1.1e-18	67.0	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|384433900|ref|YP_005643258.1|	-	7e-11	41.5	0.1	1.3e-10	40.6	0.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
HTH_AsnC-type	PF13404.6	gi|384433900|ref|YP_005643258.1|	-	6.3e-06	25.9	0.1	0.00013	21.7	0.1	2.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|384433900|ref|YP_005643258.1|	-	2.1e-05	23.9	1.0	0.00048	19.6	0.3	3.2	3	0	0	3	3	3	1	Sigma-70,	region	4
Cyclin_C	PF02984.19	gi|384433900|ref|YP_005643258.1|	-	3.6e-05	23.8	0.0	0.092	12.8	0.0	2.2	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
HTH_Tnp_ISL3	PF13542.6	gi|384433900|ref|YP_005643258.1|	-	0.00019	20.7	0.2	0.01	15.3	0.0	3.2	3	1	1	4	4	4	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.12	gi|384433900|ref|YP_005643258.1|	-	0.00053	19.6	0.2	0.0094	15.6	0.0	2.8	2	0	0	2	2	2	1	Sigma-70,	region	4
DUF3562	PF12085.8	gi|384433900|ref|YP_005643258.1|	-	0.0053	16.3	0.6	1.3	8.6	0.1	2.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3562)
HTH_24	PF13412.6	gi|384433900|ref|YP_005643258.1|	-	0.01	15.4	0.4	0.05	13.2	0.1	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|384433900|ref|YP_005643258.1|	-	0.013	15.4	0.3	0.037	14.0	0.1	1.9	2	0	0	2	2	1	0	HTH	domain
HTH_Crp_2	PF13545.6	gi|384433900|ref|YP_005643258.1|	-	0.02	14.8	2.4	0.8	9.7	0.0	3.0	3	0	0	3	3	3	0	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|384433900|ref|YP_005643258.1|	-	0.025	14.3	0.1	0.025	14.3	0.1	3.2	3	0	0	3	3	3	0	Homeodomain-like	domain
RB_B	PF01857.20	gi|384433900|ref|YP_005643258.1|	-	0.032	14.3	0.0	0.077	13.0	0.0	1.6	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
Cyclin_N	PF00134.23	gi|384433900|ref|YP_005643258.1|	-	0.057	13.2	0.3	1.7	8.4	0.2	2.2	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HU-CCDC81_euk_2	PF18289.1	gi|384433900|ref|YP_005643258.1|	-	0.16	12.1	0.1	5	7.3	0.0	2.4	2	0	0	2	2	2	0	CCDC81	eukaryotic	HU	domain	2
UPF0253	PF06786.12	gi|384433900|ref|YP_005643258.1|	-	0.23	11.7	1.6	0.55	10.6	0.0	2.4	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0253)
HTH_10	PF04967.12	gi|384433901|ref|YP_005643259.1|	-	1.3e-21	76.1	0.0	2.4e-21	75.3	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|384433901|ref|YP_005643259.1|	-	0.00014	21.4	0.0	0.00038	20.0	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|384433901|ref|YP_005643259.1|	-	0.0018	18.1	0.0	0.0039	17.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Mga	PF08280.11	gi|384433901|ref|YP_005643259.1|	-	0.0024	17.9	0.0	0.012	15.7	0.0	2.2	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Fe_dep_repress	PF01325.19	gi|384433901|ref|YP_005643259.1|	-	0.0037	17.4	0.0	0.0076	16.4	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_3	PF01381.22	gi|384433901|ref|YP_005643259.1|	-	0.0048	16.9	0.0	0.012	15.7	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
MarR_2	PF12802.7	gi|384433901|ref|YP_005643259.1|	-	0.0062	16.4	0.1	0.014	15.3	0.1	1.7	1	1	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.17	gi|384433901|ref|YP_005643259.1|	-	0.069	13.0	0.9	0.33	10.8	0.2	2.2	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_18	PF12833.7	gi|384433901|ref|YP_005643259.1|	-	0.14	12.5	0.0	7.6	6.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Aminotran_1_2	PF00155.21	gi|384433902|ref|YP_005643260.1|	-	2.4e-12	46.7	0.0	3.1e-11	43.1	0.0	2.4	2	1	0	2	2	2	1	Aminotransferase	class	I	and	II
DUF1951	PF09188.10	gi|384433902|ref|YP_005643260.1|	-	3.2	7.7	9.9	0.42	10.6	0.4	2.8	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1951)
GtrA	PF04138.14	gi|384433903|ref|YP_005643261.1|	-	5.2e-22	78.3	13.8	7.2e-22	77.8	13.8	1.2	1	0	0	1	1	1	1	GtrA-like	protein
tRNA-synt_2c	PF01411.19	gi|384433904|ref|YP_005643262.1|	-	1.4e-14	53.6	0.1	2.1e-14	53.0	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.14	gi|384433904|ref|YP_005643262.1|	-	9.6e-13	48.0	0.5	2.4e-12	46.8	0.1	1.9	2	0	0	2	2	2	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DPM2	PF07297.12	gi|384433904|ref|YP_005643262.1|	-	0.029	14.7	0.0	0.055	13.8	0.0	1.4	1	0	0	1	1	1	0	Dolichol	phosphate-mannose	biosynthesis	regulatory	protein	(DPM2)
NHL	PF01436.21	gi|384433905|ref|YP_005643263.1|	-	0.064	13.3	0.1	0.15	12.2	0.1	1.6	1	0	0	1	1	1	0	NHL	repeat
Snf7	PF03357.21	gi|384433906|ref|YP_005643264.1|	-	0.0004	20.0	0.1	0.00052	19.7	0.1	1.3	1	0	0	1	1	1	1	Snf7
LOH1CR12	PF10158.9	gi|384433906|ref|YP_005643264.1|	-	0.004	17.2	1.1	0.0077	16.3	1.1	1.5	1	1	0	1	1	1	1	Tumour	suppressor	protein
Osmo_CC	PF08946.10	gi|384433906|ref|YP_005643264.1|	-	0.12	12.6	0.6	4	7.8	0.0	2.5	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
tRNA-synt_1b	PF00579.25	gi|384433907|ref|YP_005643265.1|	-	5.3e-27	94.9	0.0	7.9e-27	94.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
HTH_23	PF13384.6	gi|384433908|ref|YP_005643266.1|	-	1.7e-16	59.5	0.1	5.2e-06	26.1	0.0	3.2	2	1	0	3	3	3	3	Homeodomain-like	domain
HTH_38	PF13936.6	gi|384433908|ref|YP_005643266.1|	-	2.1e-14	53.0	8.9	0.00012	21.8	0.2	3.1	3	0	0	3	3	3	3	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|384433908|ref|YP_005643266.1|	-	3.2e-14	52.7	7.6	5e-05	23.3	0.2	3.2	3	0	0	3	3	3	3	Helix-turn-helix	domain	of	resolvase
GcrA	PF07750.11	gi|384433908|ref|YP_005643266.1|	-	5.4e-11	43.2	0.5	8.4e-05	23.0	0.1	3.0	1	1	2	3	3	3	2	GcrA	cell	cycle	regulator
HTH_28	PF13518.6	gi|384433908|ref|YP_005643266.1|	-	1.5e-10	41.1	0.0	0.003	17.6	0.0	3.2	3	0	0	3	3	3	2	Helix-turn-helix	domain
GerE	PF00196.19	gi|384433908|ref|YP_005643266.1|	-	1.1e-09	37.6	3.3	0.016	14.7	0.2	3.2	2	1	1	3	3	3	3	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|384433908|ref|YP_005643266.1|	-	2.3e-09	36.8	1.3	3.4e-05	23.4	0.1	3.2	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|384433908|ref|YP_005643266.1|	-	2.9e-09	36.3	0.1	0.0037	16.8	0.0	3.3	3	0	0	3	3	3	3	Winged	helix-turn-helix	DNA-binding
TnsD	PF15978.5	gi|384433908|ref|YP_005643266.1|	-	3e-09	36.4	3.0	0.0054	15.8	0.5	3.0	1	1	2	3	3	3	3	Tn7-like	transposition	protein	D
HTH_40	PF14493.6	gi|384433908|ref|YP_005643266.1|	-	5.9e-09	36.3	1.3	0.00027	21.3	0.0	3.2	1	1	2	3	3	3	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|384433908|ref|YP_005643266.1|	-	2.9e-08	33.6	0.1	0.00022	21.1	0.0	3.1	3	0	0	3	3	3	1	Winged	helix-turn	helix
Terminase_5	PF06056.12	gi|384433908|ref|YP_005643266.1|	-	2.2e-07	30.6	0.2	0.063	13.2	0.0	3.3	2	1	1	3	3	3	2	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_Tnp_1	PF01527.20	gi|384433908|ref|YP_005643266.1|	-	6e-07	29.7	0.4	0.031	14.6	0.0	3.1	2	1	1	3	3	3	1	Transposase
HTH_10	PF04967.12	gi|384433908|ref|YP_005643266.1|	-	1.4e-06	28.0	0.1	0.27	11.1	0.0	3.2	3	0	0	3	3	3	2	HTH	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|384433908|ref|YP_005643266.1|	-	2.1e-06	27.1	0.0	0.027	13.9	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4	PF04545.16	gi|384433908|ref|YP_005643266.1|	-	2.6e-06	26.9	1.8	0.00055	19.4	0.1	3.0	3	0	0	3	3	3	1	Sigma-70,	region	4
Sigma70_ECF	PF07638.11	gi|384433908|ref|YP_005643266.1|	-	3.3e-06	27.1	0.4	0.0049	16.8	0.1	2.9	1	1	2	3	3	3	1	ECF	sigma	factor
Recombinase	PF07508.13	gi|384433908|ref|YP_005643266.1|	-	4.6e-06	27.0	5.1	0.37	11.2	0.2	3.5	2	1	0	3	3	3	2	Recombinase
Phage_antitermQ	PF06530.12	gi|384433908|ref|YP_005643266.1|	-	7.9e-06	25.8	3.6	0.016	15.1	0.2	2.6	1	1	2	3	3	3	2	Phage	antitermination	protein	Q
HTH_Tnp_IS1	PF12759.7	gi|384433908|ref|YP_005643266.1|	-	8.5e-06	25.3	0.3	0.00033	20.2	0.1	2.5	3	0	0	3	3	2	1	InsA	C-terminal	domain
IF2_N	PF04760.15	gi|384433908|ref|YP_005643266.1|	-	1.4e-05	24.8	6.4	0.067	13.0	0.0	3.9	2	1	2	4	4	3	2	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_11	PF08279.12	gi|384433908|ref|YP_005643266.1|	-	2.1e-05	24.4	0.8	1.7	8.6	0.0	3.3	3	0	0	3	3	3	1	HTH	domain
HTH_IclR	PF09339.10	gi|384433908|ref|YP_005643266.1|	-	4.4e-05	23.2	0.0	0.00089	19.0	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_50	PF18024.1	gi|384433908|ref|YP_005643266.1|	-	4.4e-05	23.0	1.2	0.035	13.7	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
PAX	PF00292.18	gi|384433908|ref|YP_005643266.1|	-	7.8e-05	22.6	0.1	0.00056	19.8	0.0	2.2	1	1	1	2	2	2	1	'Paired	box'	domain
HTH_Tnp_IS630	PF01710.16	gi|384433908|ref|YP_005643266.1|	-	0.0001	22.3	3.3	0.0001	22.3	3.3	1.9	1	1	1	2	2	2	1	Transposase
CENP-B_N	PF04218.13	gi|384433908|ref|YP_005643266.1|	-	0.00011	21.8	7.6	0.098	12.3	0.2	3.2	3	0	0	3	3	3	2	CENP-B	N-terminal	DNA-binding	domain
HTH_6	PF01418.17	gi|384433908|ref|YP_005643266.1|	-	0.00016	21.6	0.0	1.5	8.8	0.0	3.1	2	1	0	3	3	3	1	Helix-turn-helix	domain,	rpiR	family
HTH_5	PF01022.20	gi|384433908|ref|YP_005643266.1|	-	0.0003	20.6	0.1	1.3	8.9	0.0	3.0	3	1	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
DUF3791	PF12668.7	gi|384433908|ref|YP_005643266.1|	-	0.00034	20.6	1.8	4.2	7.5	0.1	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3791)
NUMOD1	PF07453.13	gi|384433908|ref|YP_005643266.1|	-	0.00038	20.6	3.8	2	8.8	0.4	3.3	3	0	0	3	3	3	1	NUMOD1	domain
RPA_C	PF08784.11	gi|384433908|ref|YP_005643266.1|	-	0.00044	20.9	0.1	0.1	13.3	0.0	2.8	2	1	0	3	3	3	1	Replication	protein	A	C	terminal
Sigma70_r3	PF04539.16	gi|384433908|ref|YP_005643266.1|	-	0.0006	19.9	0.1	0.081	13.0	0.0	3.5	3	2	1	4	4	4	1	Sigma-70	region	3
TrmB	PF01978.19	gi|384433908|ref|YP_005643266.1|	-	0.00087	19.1	1.1	0.47	10.4	0.0	3.7	3	2	1	4	4	4	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_8	PF02954.19	gi|384433908|ref|YP_005643266.1|	-	0.0021	17.8	0.8	4.6	7.1	0.1	3.5	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	Fis	family
HTH_25	PF13413.6	gi|384433908|ref|YP_005643266.1|	-	0.0022	17.8	0.2	3.7	7.5	0.0	3.4	3	1	0	3	3	3	0	Helix-turn-helix	domain
HTH_22	PF13309.6	gi|384433908|ref|YP_005643266.1|	-	0.0022	18.0	1.6	0.66	10.1	0.2	3.8	2	1	1	3	3	3	1	HTH	domain
DUF2802	PF10975.8	gi|384433908|ref|YP_005643266.1|	-	0.0023	18.0	0.0	0.65	10.2	0.0	2.6	3	0	0	3	3	2	1	Protein	of	unknown	function	(DUF2802)
Phage_terminase	PF10668.9	gi|384433908|ref|YP_005643266.1|	-	0.0027	17.7	0.6	0.29	11.2	0.0	2.8	2	1	1	3	3	3	1	Phage	terminase	small	subunit
Homeodomain	PF00046.29	gi|384433908|ref|YP_005643266.1|	-	0.0031	17.3	0.6	5.9	6.8	0.0	3.4	2	1	1	3	3	3	0	Homeodomain
HTH_AsnC-type	PF13404.6	gi|384433908|ref|YP_005643266.1|	-	0.0045	16.8	0.0	0.18	11.7	0.0	2.8	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
HTH_30	PF13556.6	gi|384433908|ref|YP_005643266.1|	-	0.0051	16.6	0.0	7.7	6.4	0.0	3.1	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
HTH_17	PF12728.7	gi|384433908|ref|YP_005643266.1|	-	0.0061	16.7	2.0	0.046	13.9	0.0	2.8	2	1	1	3	3	2	1	Helix-turn-helix	domain
DUF1804	PF08822.11	gi|384433908|ref|YP_005643266.1|	-	0.0063	16.5	0.2	3.6	7.5	0.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1804)
HTH_3	PF01381.22	gi|384433908|ref|YP_005643266.1|	-	0.012	15.7	2.7	3.1	7.9	0.1	3.3	2	1	1	3	3	3	0	Helix-turn-helix
HTH_26	PF13443.6	gi|384433908|ref|YP_005643266.1|	-	0.014	15.8	0.3	7.1	7.1	0.1	3.0	2	1	1	3	3	3	0	Cro/C1-type	HTH	DNA-binding	domain
MarR_2	PF12802.7	gi|384433908|ref|YP_005643266.1|	-	0.015	15.2	0.0	2.4	8.1	0.0	3.0	3	0	0	3	3	3	0	MarR	family
HTH_AraC	PF00165.23	gi|384433908|ref|YP_005643266.1|	-	0.021	14.9	0.0	0.97	9.6	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
E3_binding	PF02817.17	gi|384433908|ref|YP_005643266.1|	-	0.022	15.1	0.1	47	4.4	0.0	3.4	3	0	0	3	3	3	0	e3	binding	domain
HTH_36	PF13730.6	gi|384433908|ref|YP_005643266.1|	-	0.031	14.2	0.6	40	4.3	0.1	3.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_35	PF13693.6	gi|384433908|ref|YP_005643266.1|	-	0.032	14.3	0.1	6.1	7.0	0.0	2.6	3	0	0	3	3	2	0	Winged	helix-turn-helix	DNA-binding
Mga	PF05043.13	gi|384433908|ref|YP_005643266.1|	-	0.034	14.7	2.8	2.3	8.9	0.1	3.0	2	1	0	3	3	3	0	Mga	helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|384433908|ref|YP_005643266.1|	-	0.039	14.0	1.1	1.5	8.9	0.1	2.9	3	1	0	3	3	3	0	Putative	DNA-binding	protein	N-terminus
Trp_repressor	PF01371.19	gi|384433908|ref|YP_005643266.1|	-	0.04	14.0	1.4	2	8.6	0.0	2.8	3	0	0	3	3	3	0	Trp	repressor	protein
DUF2089	PF09862.9	gi|384433908|ref|YP_005643266.1|	-	0.046	13.8	3.2	0.81	9.7	0.1	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2089)
HTH_1	PF00126.27	gi|384433908|ref|YP_005643266.1|	-	0.049	13.6	0.0	2.2	8.3	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_19	PF12844.7	gi|384433908|ref|YP_005643266.1|	-	0.054	13.5	7.7	1.5	8.9	1.8	2.8	1	1	1	2	2	2	0	Helix-turn-helix	domain
Ribosomal_S13	PF00416.22	gi|384433908|ref|YP_005643266.1|	-	0.055	13.9	2.8	0.072	13.5	1.7	1.7	1	1	0	1	1	1	0	Ribosomal	protein	S13/S18
Death	PF00531.22	gi|384433908|ref|YP_005643266.1|	-	0.056	13.6	0.1	13	6.0	0.0	3.3	2	1	1	3	3	3	0	Death	domain
ANT	PF03374.14	gi|384433908|ref|YP_005643266.1|	-	0.063	13.6	0.1	0.97	9.8	0.1	2.3	2	1	0	2	2	2	0	Phage	antirepressor	protein	KilAC	domain
MerR_1	PF13411.6	gi|384433908|ref|YP_005643266.1|	-	0.1	12.7	4.8	4.9	7.3	0.1	3.9	4	1	1	5	5	5	0	MerR	HTH	family	regulatory	protein
Suv3_N	PF18114.1	gi|384433908|ref|YP_005643266.1|	-	0.12	12.4	0.9	4.6	7.4	0.1	2.2	2	0	0	2	2	2	0	Suv3	helical	N-terminal	domain
HTH_20	PF12840.7	gi|384433908|ref|YP_005643266.1|	-	0.16	12.1	0.0	36	4.5	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
DUF4314	PF14192.6	gi|384433908|ref|YP_005643266.1|	-	0.19	11.6	0.3	27	4.8	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4314)
DUF1699	PF08004.11	gi|384433908|ref|YP_005643266.1|	-	0.22	11.2	6.4	13	5.5	0.2	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1699)
DUF72	PF01904.18	gi|384433909|ref|YP_005643267.1|	-	2.9e-23	83.1	1.2	3.7e-23	82.8	1.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
LysE	PF01810.18	gi|384433910|ref|YP_005643268.1|	-	5.3e-15	55.4	13.0	9.1e-15	54.6	13.0	1.4	1	1	0	1	1	1	1	LysE	type	translocator
DPM3	PF08285.11	gi|384433910|ref|YP_005643268.1|	-	0.38	11.0	6.0	0.31	11.3	4.4	1.8	2	0	0	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
5-FTHF_cyc-lig	PF01812.20	gi|384433911|ref|YP_005643269.1|	-	2.1e-35	122.3	0.0	2.6e-35	122.0	0.0	1.1	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
TrmB	PF01978.19	gi|384433912|ref|YP_005643270.1|	-	3.3e-13	49.3	0.2	5.8e-13	48.5	0.1	1.5	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|384433912|ref|YP_005643270.1|	-	6.9e-07	29.1	0.0	1e-06	28.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.17	gi|384433912|ref|YP_005643270.1|	-	0.00021	21.1	0.1	0.00024	20.9	0.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.22	gi|384433912|ref|YP_005643270.1|	-	0.00022	21.1	0.0	0.00042	20.2	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|384433912|ref|YP_005643270.1|	-	0.00043	20.4	0.1	0.00085	19.5	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|384433912|ref|YP_005643270.1|	-	0.00056	19.7	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384433912|ref|YP_005643270.1|	-	0.00088	19.3	0.0	0.0015	18.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|384433912|ref|YP_005643270.1|	-	0.0023	17.5	0.1	0.0048	16.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|384433912|ref|YP_005643270.1|	-	0.0031	17.5	0.1	0.0045	16.9	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|384433912|ref|YP_005643270.1|	-	0.0037	17.7	0.0	0.006	17.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|384433912|ref|YP_005643270.1|	-	0.0095	16.3	0.0	0.016	15.6	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
DUF2250	PF10007.9	gi|384433912|ref|YP_005643270.1|	-	0.0098	16.0	0.4	0.027	14.6	0.4	1.9	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Crp_2	PF13545.6	gi|384433912|ref|YP_005643270.1|	-	0.012	15.6	0.0	0.024	14.6	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|384433912|ref|YP_005643270.1|	-	0.015	15.3	0.0	0.029	14.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|384433912|ref|YP_005643270.1|	-	0.026	14.2	0.1	0.05	13.3	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_23	PF13384.6	gi|384433912|ref|YP_005643270.1|	-	0.045	13.6	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|384433912|ref|YP_005643270.1|	-	0.052	13.1	0.2	0.078	12.5	0.2	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
SgrR_N	PF12793.7	gi|384433912|ref|YP_005643270.1|	-	0.052	13.8	0.0	0.063	13.5	0.0	1.1	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_IclR	PF09339.10	gi|384433912|ref|YP_005643270.1|	-	0.055	13.3	0.0	0.084	12.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_34	PF13601.6	gi|384433912|ref|YP_005643270.1|	-	0.067	13.4	0.1	0.095	12.9	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DsrD	PF08679.11	gi|384433913|ref|YP_005643271.1|	-	0.028	14.7	0.0	0.028	14.7	0.0	1.6	2	0	0	2	2	2	0	Dissimilatory	sulfite	reductase	D	(DsrD)
HTH_57	PF18679.1	gi|384433913|ref|YP_005643271.1|	-	0.089	13.1	0.0	0.1	12.9	0.0	1.1	1	0	0	1	1	1	0	ThcOx	helix	turn	helix	domain
HTH_5	PF01022.20	gi|384433913|ref|YP_005643271.1|	-	0.18	11.7	0.5	0.34	10.8	0.1	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
ParA	PF10609.9	gi|384433914|ref|YP_005643272.1|	-	3.9e-98	327.8	0.1	4.6e-98	327.6	0.1	1.0	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|384433914|ref|YP_005643272.1|	-	6.7e-13	48.8	0.0	1.9e-11	44.1	0.0	2.7	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|384433914|ref|YP_005643272.1|	-	1.7e-09	37.8	0.4	2.5e-06	27.5	0.2	2.4	2	0	0	2	2	2	2	AAA	domain
Fer4_NifH	PF00142.18	gi|384433914|ref|YP_005643272.1|	-	2.9e-09	36.8	0.1	5.9e-05	22.6	0.3	2.4	2	1	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|384433914|ref|YP_005643272.1|	-	1.1e-05	24.9	0.0	2e-05	24.0	0.0	1.4	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|384433914|ref|YP_005643272.1|	-	6.2e-05	22.3	3.8	0.00015	21.0	1.2	2.3	2	1	0	2	2	2	1	Anion-transporting	ATPase
MeaB	PF03308.16	gi|384433914|ref|YP_005643272.1|	-	0.0009	18.3	0.3	0.0015	17.6	0.3	1.3	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_25	PF13481.6	gi|384433914|ref|YP_005643272.1|	-	0.0016	18.0	0.0	0.0058	16.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_26	PF13500.6	gi|384433914|ref|YP_005643272.1|	-	0.0048	16.7	1.1	1.5	8.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|384433915|ref|YP_005643273.1|	-	4.6e-21	75.7	0.6	1.8e-20	73.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|384433915|ref|YP_005643273.1|	-	7.9e-08	32.8	0.1	1.9e-06	28.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|384433915|ref|YP_005643273.1|	-	3.6e-05	24.2	0.2	0.00041	20.8	0.0	2.3	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|384433915|ref|YP_005643273.1|	-	6.6e-05	22.9	0.4	0.0039	17.1	0.0	2.8	2	1	0	2	2	2	1	NTPase
AAA_5	PF07728.14	gi|384433915|ref|YP_005643273.1|	-	0.00011	22.3	0.1	0.0004	20.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
KTI12	PF08433.10	gi|384433915|ref|YP_005643273.1|	-	0.00023	20.7	0.5	0.0018	17.8	0.0	2.1	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|384433915|ref|YP_005643273.1|	-	0.0011	19.2	0.0	0.0028	17.9	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Med7	PF05983.11	gi|384433915|ref|YP_005643273.1|	-	0.0012	19.0	0.8	0.05	13.7	0.1	2.1	2	0	0	2	2	2	1	MED7	protein
AAA_33	PF13671.6	gi|384433915|ref|YP_005643273.1|	-	0.0026	17.9	0.0	0.0052	17.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|384433915|ref|YP_005643273.1|	-	0.0027	17.5	0.0	0.56	9.9	0.0	2.3	2	0	0	2	2	2	1	Cytidylate	kinase
AAA_26	PF13500.6	gi|384433915|ref|YP_005643273.1|	-	0.006	16.4	4.7	0.047	13.5	4.7	2.0	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|384433915|ref|YP_005643273.1|	-	0.0072	16.5	0.2	0.021	15.0	0.2	1.9	1	1	0	1	1	1	1	Shikimate	kinase
AAA_14	PF13173.6	gi|384433915|ref|YP_005643273.1|	-	0.018	15.1	0.6	0.05	13.6	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|384433915|ref|YP_005643273.1|	-	0.021	15.1	0.0	0.04	14.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|384433915|ref|YP_005643273.1|	-	0.024	14.6	0.0	0.085	12.8	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
RNA_helicase	PF00910.22	gi|384433915|ref|YP_005643273.1|	-	0.026	14.9	0.0	0.07	13.5	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
PRK	PF00485.18	gi|384433915|ref|YP_005643273.1|	-	0.027	14.2	0.0	0.1	12.3	0.0	2.0	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF2075	PF09848.9	gi|384433915|ref|YP_005643273.1|	-	0.032	13.5	0.0	0.046	12.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_16	PF13191.6	gi|384433915|ref|YP_005643273.1|	-	0.038	14.4	0.0	0.053	13.9	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF2408	PF10303.9	gi|384433915|ref|YP_005643273.1|	-	0.039	14.5	1.7	0.039	14.5	0.3	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2408)
Hydin_ADK	PF17213.3	gi|384433915|ref|YP_005643273.1|	-	0.041	14.2	0.0	0.076	13.3	0.0	1.4	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
AAA_3	PF07726.11	gi|384433915|ref|YP_005643273.1|	-	0.041	13.7	0.0	0.082	12.8	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|384433915|ref|YP_005643273.1|	-	0.059	12.6	0.5	0.18	11.0	0.0	2.0	2	1	0	2	2	2	0	Zeta	toxin
AAA_24	PF13479.6	gi|384433915|ref|YP_005643273.1|	-	0.07	12.8	0.2	0.94	9.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.12	gi|384433915|ref|YP_005643273.1|	-	0.092	12.5	0.1	0.23	11.2	0.1	1.7	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
RNase_J_C	PF17770.1	gi|384433915|ref|YP_005643273.1|	-	0.31	12.1	0.3	0.31	12.1	0.3	2.1	3	0	0	3	3	1	0	Ribonuclease	J	C-terminal	domain
MeaB	PF03308.16	gi|384433915|ref|YP_005643273.1|	-	0.44	9.5	1.8	1.4	7.8	0.1	2.2	2	1	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ATPase	PF06745.13	gi|384433915|ref|YP_005643273.1|	-	0.93	8.8	7.5	1.2	8.4	0.6	2.7	1	1	2	3	3	3	0	KaiC
Rhomboid	PF01694.22	gi|384433917|ref|YP_005643275.1|	-	2.8e-16	59.9	13.1	2.8e-16	59.9	13.1	1.7	2	0	0	2	2	2	1	Rhomboid	family
DUF1751	PF08551.10	gi|384433917|ref|YP_005643275.1|	-	2.3	8.9	13.3	0.063	13.9	3.2	2.9	1	1	1	3	3	3	0	Eukaryotic	integral	membrane	protein	(DUF1751)
DUF805	PF05656.14	gi|384433917|ref|YP_005643275.1|	-	2.8	8.4	9.1	0.24	11.8	1.2	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF805)
Peptidase_M50	PF02163.22	gi|384433918|ref|YP_005643276.1|	-	1.8e-06	27.5	9.9	0.0012	18.1	0.7	3.1	1	1	1	2	2	2	2	Peptidase	family	M50
MMPL	PF03176.15	gi|384433921|ref|YP_005643279.1|	-	2e-22	79.6	5.2	3.4e-22	78.8	5.2	1.3	1	0	0	1	1	1	1	MMPL	family
EMG1	PF03587.14	gi|384433921|ref|YP_005643279.1|	-	0.037	13.7	0.4	0.087	12.5	0.3	1.6	2	0	0	2	2	2	0	EMG1/NEP1	methyltransferase
DUF772	PF05598.11	gi|384433922|ref|YP_005643280.1|	-	0.00066	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384433922|ref|YP_005643280.1|	-	0.041	13.5	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
ThiP_synth	PF10120.9	gi|384433923|ref|YP_005643281.1|	-	3.7e-50	169.8	0.2	4.8e-50	169.4	0.2	1.1	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_37	PF13744.6	gi|384433923|ref|YP_005643281.1|	-	0.0046	16.9	0.1	0.01	15.7	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|384433923|ref|YP_005643281.1|	-	0.012	15.7	0.2	0.035	14.1	0.1	1.8	2	0	0	2	2	1	0	Helix-turn-helix
YdaS_antitoxin	PF15943.5	gi|384433923|ref|YP_005643281.1|	-	0.013	15.4	0.0	0.097	12.5	0.0	2.2	2	0	0	2	2	2	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_24	PF13412.6	gi|384433923|ref|YP_005643281.1|	-	0.013	15.0	0.1	0.16	11.5	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MoCF_biosynth	PF00994.24	gi|384433923|ref|YP_005643281.1|	-	0.05	13.3	0.2	0.22	11.2	0.1	2.0	2	0	0	2	2	2	0	Probable	molybdopterin	binding	domain
HTH_Crp_2	PF13545.6	gi|384433923|ref|YP_005643281.1|	-	0.055	13.4	0.0	0.19	11.7	0.0	1.9	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|384433923|ref|YP_005643281.1|	-	0.073	12.8	0.0	0.19	11.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
MerR-DNA-bind	PF09278.11	gi|384433923|ref|YP_005643281.1|	-	0.077	13.5	0.1	0.74	10.4	0.0	2.3	2	0	0	2	2	2	0	MerR,	DNA	binding
P22_Cro	PF14549.6	gi|384433923|ref|YP_005643281.1|	-	0.079	12.8	0.0	0.22	11.4	0.0	1.7	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
HTH_Tnp_ISL3	PF13542.6	gi|384433923|ref|YP_005643281.1|	-	0.083	12.3	0.0	0.22	11.0	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
RepB	PF07506.11	gi|384433923|ref|YP_005643281.1|	-	0.14	12.3	0.0	0.6	10.2	0.0	2.0	1	1	1	2	2	2	0	RepB	plasmid	partitioning	protein
NurA	PF09376.10	gi|384433924|ref|YP_005643282.1|	-	1.5e-06	28.1	0.3	8.3e-05	22.4	0.0	2.1	1	1	1	2	2	2	2	NurA	domain
DUF87	PF01935.17	gi|384433925|ref|YP_005643283.1|	-	6.7e-19	68.9	4.3	3.1e-18	66.7	4.3	2.0	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
SWI2_SNF2	PF18766.1	gi|384433925|ref|YP_005643283.1|	-	0.017	14.8	0.0	6.7	6.3	0.0	2.4	2	0	0	2	2	2	0	SWI2/SNF2	ATPase
FtsK_SpoIIIE	PF01580.18	gi|384433925|ref|YP_005643283.1|	-	0.18	11.1	0.0	0.59	9.4	0.0	1.8	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_14	PF13173.6	gi|384433925|ref|YP_005643283.1|	-	1.4	9.0	6.0	15	5.6	0.1	3.7	3	1	0	4	4	4	0	AAA	domain
DUF131	PF01998.17	gi|384433928|ref|YP_005643286.1|	-	6.5e-13	48.1	8.3	6.5e-13	48.1	8.3	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
DUF4064	PF13273.6	gi|384433928|ref|YP_005643286.1|	-	0.00039	20.6	6.9	0.00048	20.4	6.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4064)
Phage_holin_3_6	PF07332.11	gi|384433928|ref|YP_005643286.1|	-	0.0063	16.5	6.0	0.0081	16.2	6.0	1.2	1	0	0	1	1	1	1	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Adeno_E3_CR2	PF02439.15	gi|384433928|ref|YP_005643286.1|	-	0.018	14.8	4.1	0.018	14.8	4.1	1.8	2	0	0	2	2	2	0	Adenovirus	E3	region	protein	CR2
DUF872	PF05915.12	gi|384433928|ref|YP_005643286.1|	-	0.066	13.4	1.2	0.066	13.4	1.2	1.9	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Ost5	PF05251.12	gi|384433928|ref|YP_005643286.1|	-	0.24	11.7	10.6	0.12	12.7	1.5	2.0	1	1	1	2	2	2	0	Oligosaccharyltransferase	subunit	5
Orf78	PF06024.12	gi|384433928|ref|YP_005643286.1|	-	0.24	11.7	1.8	0.32	11.3	1.2	1.5	2	0	0	2	2	2	0	Orf78	(ac78)
OAD_gamma	PF04277.13	gi|384433928|ref|YP_005643286.1|	-	0.38	11.4	10.2	2.1	9.0	4.5	2.2	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
Collectrin	PF16959.5	gi|384433928|ref|YP_005643286.1|	-	0.52	10.1	2.8	0.67	9.7	2.8	1.2	1	0	0	1	1	1	0	Renal	amino	acid	transporter
DUF4227	PF14004.6	gi|384433928|ref|YP_005643286.1|	-	0.6	10.1	4.1	3.1	7.8	0.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4227)
DUF2207	PF09972.9	gi|384433928|ref|YP_005643286.1|	-	0.7	8.6	7.6	0.83	8.3	7.6	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Baculo_11_kDa	PF06143.11	gi|384433928|ref|YP_005643286.1|	-	3.5	7.3	6.4	5	6.8	5.0	1.8	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
ADH_N	PF08240.12	gi|384433929|ref|YP_005643287.1|	-	1.9e-30	104.9	1.0	1.4e-29	102.1	0.1	2.2	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384433929|ref|YP_005643287.1|	-	8.9e-29	100.1	0.2	1.4e-28	99.4	0.2	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384433929|ref|YP_005643287.1|	-	3.2e-10	41.2	0.0	1.1e-09	39.5	0.0	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|384433929|ref|YP_005643287.1|	-	1.4e-06	28.0	1.1	3.1e-06	26.8	1.1	1.6	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
2-Hacid_dh_C	PF02826.19	gi|384433929|ref|YP_005643287.1|	-	0.048	13.0	0.1	0.13	11.6	0.2	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ResIII	PF04851.15	gi|384433930|ref|YP_005643288.1|	-	4.6e-24	85.3	0.0	1.5e-23	83.7	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|384433930|ref|YP_005643288.1|	-	2.5e-19	69.6	0.1	2.5e-18	66.4	0.1	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ERCC3_RAD25_C	PF16203.5	gi|384433930|ref|YP_005643288.1|	-	4.1e-19	68.8	0.4	6.6e-19	68.1	0.4	1.3	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
DEAD	PF00270.29	gi|384433930|ref|YP_005643288.1|	-	2.4e-10	40.5	0.3	2.7e-09	37.0	0.1	2.6	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
XPB_DRD	PF18458.1	gi|384433930|ref|YP_005643288.1|	-	2.5e-08	33.7	0.1	1.7e-07	31.0	0.0	2.4	2	0	0	2	2	2	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
Helicase_C_2	PF13307.6	gi|384433930|ref|YP_005643288.1|	-	0.017	15.3	0.4	0.74	10.0	0.0	2.7	2	0	0	2	2	2	0	Helicase	C-terminal	domain
DUF790	PF05626.11	gi|384433931|ref|YP_005643289.1|	-	6.8e-114	380.6	6.0	8.5e-114	380.3	6.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
Radical_SAM	PF04055.21	gi|384433932|ref|YP_005643290.1|	-	1.7e-15	57.8	0.0	1.2e-14	55.0	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
PmbA_TldD	PF01523.16	gi|384433933|ref|YP_005643291.1|	-	3.1e-14	53.5	0.0	6.1e-14	52.5	0.0	1.4	1	1	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Methyltransf_11	PF08241.12	gi|384433934|ref|YP_005643292.1|	-	1.5e-17	64.0	0.0	2.1e-17	63.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384433934|ref|YP_005643292.1|	-	1.8e-12	47.8	0.0	2.5e-12	47.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384433934|ref|YP_005643292.1|	-	1.4e-10	41.3	0.0	2e-10	40.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384433934|ref|YP_005643292.1|	-	5.3e-08	32.8	0.0	7.7e-08	32.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384433934|ref|YP_005643292.1|	-	6.1e-06	26.9	0.0	1e-05	26.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384433934|ref|YP_005643292.1|	-	9.7e-06	25.1	0.0	1.5e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|384433934|ref|YP_005643292.1|	-	3.5e-05	23.8	0.0	4.9e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
CMAS	PF02353.20	gi|384433934|ref|YP_005643292.1|	-	0.0023	17.3	0.0	0.0027	17.0	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|384433934|ref|YP_005643292.1|	-	0.023	14.3	0.0	0.032	13.8	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_15	PF09445.10	gi|384433934|ref|YP_005643292.1|	-	0.043	13.4	0.1	0.066	12.8	0.1	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF769	PF05590.11	gi|384433934|ref|YP_005643292.1|	-	0.24	10.8	0.0	0.35	10.3	0.0	1.2	1	0	0	1	1	1	0	Xylella	fastidiosa	protein	of	unknown	function	(DUF769)
Radical_SAM_C	PF16199.5	gi|384433935|ref|YP_005643293.1|	-	2.7e-25	88.2	0.4	5e-25	87.4	0.4	1.5	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Radical_SAM	PF04055.21	gi|384433935|ref|YP_005643293.1|	-	1.6e-22	80.6	0.0	3.5e-22	79.6	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.25	gi|384433935|ref|YP_005643293.1|	-	9.6e-10	38.7	0.2	2.2e-09	37.5	0.2	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|384433935|ref|YP_005643293.1|	-	4.3e-05	23.5	0.2	0.00036	20.5	0.1	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|384433935|ref|YP_005643293.1|	-	0.037	14.5	0.1	0.082	13.3	0.1	1.7	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
HobA	PF12163.8	gi|384433935|ref|YP_005643293.1|	-	0.061	12.9	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	DNA	replication	regulator
HAD_2	PF13419.6	gi|384433936|ref|YP_005643294.1|	-	2.2e-29	102.8	0.1	2.8e-29	102.4	0.1	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384433936|ref|YP_005643294.1|	-	4.6e-15	56.5	0.8	8.6e-13	49.0	0.8	2.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|384433936|ref|YP_005643294.1|	-	1.2e-08	35.6	0.0	2.6e-08	34.5	0.0	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|384433936|ref|YP_005643294.1|	-	0.00059	19.9	0.0	0.0014	18.6	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|384433936|ref|YP_005643294.1|	-	0.0014	18.7	0.0	0.38	10.9	0.0	2.3	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
NIF	PF03031.18	gi|384433936|ref|YP_005643294.1|	-	0.012	15.4	0.2	0.11	12.3	0.2	2.2	1	1	0	1	1	1	0	NLI	interacting	factor-like	phosphatase
Hydrolase_3	PF08282.12	gi|384433936|ref|YP_005643294.1|	-	0.28	10.9	3.2	2.9	7.6	0.2	3.0	2	1	2	4	4	4	0	haloacid	dehalogenase-like	hydrolase
MttA_Hcf106	PF02416.16	gi|384433937|ref|YP_005643295.1|	-	4.8e-11	41.8	3.3	1.1e-10	40.7	3.3	1.7	1	1	0	1	1	1	1	mttA/Hcf106	family
DUF4834	PF16118.5	gi|384433937|ref|YP_005643295.1|	-	0.00025	21.9	0.3	0.00031	21.6	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4834)
DUF5320	PF17253.2	gi|384433937|ref|YP_005643295.1|	-	0.0093	17.0	1.6	0.012	16.7	1.6	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5320)
Amj	PF10997.8	gi|384433937|ref|YP_005643295.1|	-	0.027	13.8	0.0	0.032	13.6	0.0	1.0	1	0	0	1	1	1	0	Alternate	to	MurJ
HECT	PF00632.25	gi|384433937|ref|YP_005643295.1|	-	0.039	13.4	0.1	0.039	13.4	0.1	1.1	1	0	0	1	1	1	0	HECT-domain	(ubiquitin-transferase)
Nup54_57_C	PF18570.1	gi|384433937|ref|YP_005643295.1|	-	0.04	13.5	4.8	0.071	12.7	4.8	1.4	1	0	0	1	1	1	0	NUP57/Nup54	C-terminal	domain
DUF3573	PF12097.8	gi|384433937|ref|YP_005643295.1|	-	0.072	11.9	0.9	0.074	11.9	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
GTP-bdg_M	PF16360.5	gi|384433937|ref|YP_005643295.1|	-	0.088	13.4	3.6	0.14	12.8	3.6	1.5	1	1	0	1	1	1	0	GTP-binding	GTPase	Middle	Region
DUF4094	PF13334.6	gi|384433937|ref|YP_005643295.1|	-	0.11	13.0	4.3	0.17	12.3	4.3	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
ATP-synt_G	PF04718.15	gi|384433937|ref|YP_005643295.1|	-	0.11	13.4	2.9	0.15	12.9	2.9	1.3	1	0	0	1	1	1	0	Mitochondrial	ATP	synthase	g	subunit
DUF4140	PF13600.6	gi|384433937|ref|YP_005643295.1|	-	0.16	12.4	3.4	0.22	12.0	3.4	1.2	1	0	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4407	PF14362.6	gi|384433937|ref|YP_005643295.1|	-	1.7	7.9	6.3	2.2	7.6	6.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
bZIP_2	PF07716.15	gi|384433937|ref|YP_005643295.1|	-	3.4	7.8	12.5	0.37	10.9	4.0	2.1	2	0	0	2	2	2	0	Basic	region	leucine	zipper
Spc24	PF08286.11	gi|384433937|ref|YP_005643295.1|	-	4.2	7.7	9.6	5.9	7.2	7.5	2.0	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
FlxA	PF14282.6	gi|384433938|ref|YP_005643296.1|	-	0.0094	15.9	0.8	0.015	15.3	0.3	1.6	1	1	0	1	1	1	1	FlxA-like	protein
Cob_adeno_trans	PF01923.18	gi|384433938|ref|YP_005643296.1|	-	0.0098	16.0	1.8	0.066	13.4	0.1	2.0	2	0	0	2	2	2	1	Cobalamin	adenosyltransferase
HalX	PF08663.10	gi|384433938|ref|YP_005643296.1|	-	0.017	15.5	3.0	0.1	12.9	0.9	2.1	2	0	0	2	2	2	0	HalX	domain
DUF3375	PF11855.8	gi|384433938|ref|YP_005643296.1|	-	0.018	14.0	0.5	0.018	14.0	0.5	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3375)
Snapin_Pallidin	PF14712.6	gi|384433938|ref|YP_005643296.1|	-	0.02	15.3	2.2	0.033	14.6	2.2	1.3	1	1	0	1	1	1	0	Snapin/Pallidin
CEP63	PF17045.5	gi|384433938|ref|YP_005643296.1|	-	0.03	14.3	2.5	0.043	13.7	2.5	1.3	1	1	0	1	1	1	0	Centrosomal	protein	of	63	kDa
DMPK_coil	PF08826.10	gi|384433938|ref|YP_005643296.1|	-	0.031	14.4	4.7	0.11	12.6	4.8	1.9	1	1	0	1	1	1	0	DMPK	coiled	coil	domain	like
DUF3338	PF11819.8	gi|384433938|ref|YP_005643296.1|	-	0.032	14.2	0.5	6	6.8	0.4	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3338)
DUF1192	PF06698.11	gi|384433938|ref|YP_005643296.1|	-	0.034	14.2	3.1	0.045	13.8	1.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DUF1664	PF07889.12	gi|384433938|ref|YP_005643296.1|	-	0.041	13.9	0.4	0.11	12.6	0.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
bZIP_2	PF07716.15	gi|384433938|ref|YP_005643296.1|	-	0.059	13.5	2.1	0.059	13.5	2.1	1.9	2	0	0	2	2	2	0	Basic	region	leucine	zipper
DUF5082	PF16888.5	gi|384433938|ref|YP_005643296.1|	-	0.06	13.6	1.1	0.087	13.1	0.4	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
DUF2802	PF10975.8	gi|384433938|ref|YP_005643296.1|	-	0.065	13.4	1.2	0.43	10.7	1.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
MttA_Hcf106	PF02416.16	gi|384433938|ref|YP_005643296.1|	-	0.088	12.2	1.2	0.16	11.3	1.2	1.6	1	1	0	1	1	1	0	mttA/Hcf106	family
DUF5595	PF18077.1	gi|384433938|ref|YP_005643296.1|	-	0.11	12.6	0.5	0.11	12.6	0.5	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5595)
CtIP_N	PF10482.9	gi|384433938|ref|YP_005643296.1|	-	0.14	12.3	4.0	1.1	9.3	0.7	2.1	1	1	1	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
DUF4140	PF13600.6	gi|384433938|ref|YP_005643296.1|	-	0.16	12.4	1.6	0.27	11.7	1.6	1.6	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
Med9	PF07544.13	gi|384433938|ref|YP_005643296.1|	-	0.83	9.8	4.7	7.3	6.8	4.7	2.0	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DivIC	PF04977.15	gi|384433938|ref|YP_005643296.1|	-	1.8	8.4	5.9	0.2	11.5	0.8	2.0	3	0	0	3	3	3	0	Septum	formation	initiator
TatC	PF00902.18	gi|384433939|ref|YP_005643297.1|	-	7.2e-46	156.6	23.0	9.1e-46	156.3	23.0	1.2	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
Peripla_BP_2	PF01497.18	gi|384433940|ref|YP_005643298.1|	-	9.4e-13	48.3	0.0	1.2e-12	47.9	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
FecCD	PF01032.18	gi|384433941|ref|YP_005643299.1|	-	3.2e-70	236.6	38.4	4.1e-70	236.3	38.4	1.0	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|384433941|ref|YP_005643299.1|	-	3.5e-06	26.7	25.3	3.5e-06	26.7	25.3	1.8	2	1	0	2	2	2	1	ABC	3	transport	family
ABC_tran	PF00005.27	gi|384433942|ref|YP_005643300.1|	-	5.5e-17	62.6	0.1	1.2e-16	61.5	0.1	1.5	1	1	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384433942|ref|YP_005643300.1|	-	1.3e-13	51.5	1.0	1.6e-06	28.2	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384433942|ref|YP_005643300.1|	-	9e-11	41.6	4.4	5.8e-05	22.6	0.4	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384433942|ref|YP_005643300.1|	-	6.8e-09	36.5	0.8	7.7e-09	36.3	0.8	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|384433942|ref|YP_005643300.1|	-	1.9e-06	26.8	2.8	0.0019	16.9	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|384433942|ref|YP_005643300.1|	-	0.00013	21.8	2.3	0.00021	21.1	2.3	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384433942|ref|YP_005643300.1|	-	0.0002	21.1	0.1	0.0004	20.1	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|384433942|ref|YP_005643300.1|	-	0.00026	20.6	0.1	0.0007	19.3	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_30	PF13604.6	gi|384433942|ref|YP_005643300.1|	-	0.00029	20.6	0.0	0.00039	20.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|384433942|ref|YP_005643300.1|	-	0.00055	18.8	0.2	0.018	13.9	0.1	2.2	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
ATPase_2	PF01637.18	gi|384433942|ref|YP_005643300.1|	-	0.00072	19.5	2.9	0.0017	18.4	2.9	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
IstB_IS21	PF01695.17	gi|384433942|ref|YP_005643300.1|	-	0.0045	16.7	0.7	2.3	7.9	0.1	2.1	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Adeno_IVa2	PF02456.15	gi|384433942|ref|YP_005643300.1|	-	0.0046	15.8	0.7	0.013	14.3	0.3	1.8	1	1	1	2	2	2	1	Adenovirus	IVa2	protein
AAA_19	PF13245.6	gi|384433942|ref|YP_005643300.1|	-	0.0061	16.9	0.1	0.01	16.2	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
cobW	PF02492.19	gi|384433942|ref|YP_005643300.1|	-	0.0066	16.0	0.8	0.015	14.9	0.2	1.9	1	1	1	3	3	3	1	CobW/HypB/UreG,	nucleotide-binding	domain
NACHT	PF05729.12	gi|384433942|ref|YP_005643300.1|	-	0.0076	16.2	0.0	0.0093	15.9	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
T2SSE	PF00437.20	gi|384433942|ref|YP_005643300.1|	-	0.008	15.3	0.2	0.013	14.6	0.2	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_22	PF13401.6	gi|384433942|ref|YP_005643300.1|	-	0.011	16.0	0.0	0.016	15.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|384433942|ref|YP_005643300.1|	-	0.016	15.6	0.1	0.035	14.5	0.1	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|384433942|ref|YP_005643300.1|	-	0.017	15.0	0.6	0.043	13.7	0.6	1.8	1	1	0	1	1	1	0	NTPase
AAA_33	PF13671.6	gi|384433942|ref|YP_005643300.1|	-	0.036	14.2	0.0	0.18	12.0	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|384433942|ref|YP_005643300.1|	-	0.048	13.6	0.3	0.048	13.6	0.3	2.1	2	1	0	2	2	2	0	RsgA	GTPase
AAA_14	PF13173.6	gi|384433942|ref|YP_005643300.1|	-	0.051	13.6	0.4	0.1	12.6	0.4	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|384433942|ref|YP_005643300.1|	-	0.066	13.6	0.1	0.12	12.8	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|384433942|ref|YP_005643300.1|	-	0.078	13.5	0.3	0.19	12.3	0.3	1.8	1	1	0	1	1	1	0	AAA	domain
RVT_1	PF00078.27	gi|384433942|ref|YP_005643300.1|	-	0.091	12.3	0.2	0.37	10.3	0.1	1.8	1	1	1	2	2	2	0	Reverse	transcriptase	(RNA-dependent	DNA	polymerase)
gp45-slide_C	PF09116.10	gi|384433942|ref|YP_005643300.1|	-	0.1	12.7	0.8	11	6.1	0.0	2.6	1	1	0	2	2	2	0	gp45	sliding	clamp,	C	terminal
DUF2075	PF09848.9	gi|384433942|ref|YP_005643300.1|	-	0.1	11.8	0.0	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
SbcCD_C	PF13558.6	gi|384433942|ref|YP_005643300.1|	-	0.13	12.5	0.0	2.4	8.4	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_28	PF13521.6	gi|384433942|ref|YP_005643300.1|	-	0.13	12.5	0.0	0.27	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|384433942|ref|YP_005643300.1|	-	0.15	11.4	0.1	2.2	7.5	0.0	2.1	2	0	0	2	2	2	0	Zeta	toxin
AAA_11	PF13086.6	gi|384433942|ref|YP_005643300.1|	-	0.15	11.8	0.1	0.83	9.4	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|384433943|ref|YP_005643301.1|	-	3.4e-35	121.6	0.0	4.5e-35	121.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384433943|ref|YP_005643301.1|	-	2.5e-08	34.1	0.4	0.0062	16.4	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384433943|ref|YP_005643301.1|	-	1.4e-07	31.2	0.3	4.2e-07	29.6	0.3	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|384433943|ref|YP_005643301.1|	-	0.00032	20.6	0.1	0.00086	19.3	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|384433943|ref|YP_005643301.1|	-	0.00035	20.3	0.2	0.001	18.7	0.1	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|384433943|ref|YP_005643301.1|	-	0.00091	18.5	0.0	0.0013	18.0	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
ABC_ATPase	PF09818.9	gi|384433943|ref|YP_005643301.1|	-	0.0016	17.3	0.0	0.91	8.2	0.0	2.2	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_22	PF13401.6	gi|384433943|ref|YP_005643301.1|	-	0.0026	18.0	0.0	0.0073	16.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|384433943|ref|YP_005643301.1|	-	0.0027	18.3	0.8	0.0053	17.3	0.7	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|384433943|ref|YP_005643301.1|	-	0.0029	17.3	0.0	0.019	14.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|384433943|ref|YP_005643301.1|	-	0.0052	17.3	0.0	0.013	16.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|384433943|ref|YP_005643301.1|	-	0.0071	16.1	0.7	0.21	11.3	0.1	2.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|384433943|ref|YP_005643301.1|	-	0.013	15.9	0.0	0.025	15.0	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
Rad17	PF03215.15	gi|384433943|ref|YP_005643301.1|	-	0.014	15.4	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA	PF00004.29	gi|384433943|ref|YP_005643301.1|	-	0.014	15.8	0.2	0.16	12.4	0.2	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|384433943|ref|YP_005643301.1|	-	0.033	13.9	0.2	0.074	12.8	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|384433943|ref|YP_005643301.1|	-	0.037	14.1	0.6	0.088	12.9	0.1	1.8	2	1	0	2	2	2	0	Helicase	HerA,	central	domain
T2SSE	PF00437.20	gi|384433943|ref|YP_005643301.1|	-	0.041	12.9	0.0	0.07	12.2	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
KAP_NTPase	PF07693.14	gi|384433943|ref|YP_005643301.1|	-	0.073	12.3	0.0	0.084	12.1	0.0	1.3	1	1	0	1	1	1	0	KAP	family	P-loop	domain
MeaB	PF03308.16	gi|384433943|ref|YP_005643301.1|	-	0.078	11.9	0.0	0.14	11.2	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
PRK	PF00485.18	gi|384433943|ref|YP_005643301.1|	-	0.086	12.6	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF3619	PF12279.8	gi|384433943|ref|YP_005643301.1|	-	0.16	12.3	0.1	0.27	11.6	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3619)
DUF3987	PF13148.6	gi|384433943|ref|YP_005643301.1|	-	0.17	10.8	0.0	0.36	9.8	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
PBP_like_2	PF12849.7	gi|384433944|ref|YP_005643302.1|	-	2.8e-45	155.2	5.2	4e-45	154.7	5.2	1.1	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|384433944|ref|YP_005643302.1|	-	1.3e-09	38.4	0.6	2.5e-09	37.5	0.6	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.7	gi|384433944|ref|YP_005643302.1|	-	4.5e-07	29.2	0.0	6.5e-06	25.4	0.0	2.2	1	1	0	1	1	1	1	PBP	superfamily	domain
LysR_substrate	PF03466.20	gi|384433944|ref|YP_005643302.1|	-	0.043	13.2	0.0	0.073	12.4	0.0	1.3	1	0	0	1	1	1	0	LysR	substrate	binding	domain
Lipoprotein_Ltp	PF07553.11	gi|384433944|ref|YP_005643302.1|	-	0.39	11.0	1.7	8	6.8	0.0	2.7	2	0	0	2	2	2	0	Host	cell	surface-exposed	lipoprotein
BPD_transp_1	PF00528.22	gi|384433945|ref|YP_005643303.1|	-	2.5e-09	37.1	17.0	2.5e-09	37.1	17.0	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384433946|ref|YP_005643304.1|	-	1.1e-13	51.4	19.5	1.1e-13	51.4	19.5	2.0	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PALP	PF00291.25	gi|384433947|ref|YP_005643305.1|	-	4.2e-63	213.5	0.0	5e-63	213.3	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Zn-ribbon_8	PF09723.10	gi|384433947|ref|YP_005643305.1|	-	0.047	13.8	1.6	0.14	12.3	0.3	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
DFP	PF04127.15	gi|384433947|ref|YP_005643305.1|	-	0.053	13.4	0.2	0.088	12.6	0.2	1.3	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
DUF2250	PF10007.9	gi|384433947|ref|YP_005643305.1|	-	0.081	13.0	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF3851	PF12962.7	gi|384433947|ref|YP_005643305.1|	-	0.14	12.4	0.0	0.27	11.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3851)
DDE_Tnp_1	PF01609.21	gi|384433948|ref|YP_005643306.1|	-	6.8e-16	58.6	0.0	1.3e-15	57.6	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
P5CR_dimer	PF14748.6	gi|384433949|ref|YP_005643307.1|	-	9e-31	106.2	0.2	1.5e-30	105.5	0.2	1.4	1	0	0	1	1	1	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.17	gi|384433949|ref|YP_005643307.1|	-	9e-20	71.1	0.5	2.1e-19	69.9	0.5	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|384433949|ref|YP_005643307.1|	-	8.5e-07	28.5	0.1	1.4e-06	27.8	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|384433949|ref|YP_005643307.1|	-	5e-06	26.6	1.6	7.2e-05	22.8	1.1	2.6	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Rossmann-like	PF10727.9	gi|384433949|ref|YP_005643307.1|	-	1.9e-05	24.5	0.1	3.1e-05	23.8	0.1	1.4	1	0	0	1	1	1	1	Rossmann-like	domain
DapB_N	PF01113.20	gi|384433949|ref|YP_005643307.1|	-	8.7e-05	22.6	0.1	0.00016	21.8	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_2	PF03446.15	gi|384433949|ref|YP_005643307.1|	-	0.00015	21.9	0.1	0.00033	20.8	0.1	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PDH	PF02153.17	gi|384433949|ref|YP_005643307.1|	-	0.00027	20.0	0.6	0.0015	17.6	0.2	2.0	2	0	0	2	2	2	1	Prephenate	dehydrogenase
Shikimate_DH	PF01488.20	gi|384433949|ref|YP_005643307.1|	-	0.00097	19.2	0.1	0.002	18.2	0.1	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.16	gi|384433949|ref|YP_005643307.1|	-	0.0027	17.4	0.4	0.0092	15.6	0.3	1.9	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.22	gi|384433949|ref|YP_005643307.1|	-	0.0099	16.7	0.0	0.018	15.9	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
IlvN	PF07991.12	gi|384433949|ref|YP_005643307.1|	-	0.046	13.3	0.1	0.074	12.6	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|384433949|ref|YP_005643307.1|	-	0.048	13.9	0.2	0.15	12.3	0.2	2.0	1	1	0	1	1	1	0	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|384433949|ref|YP_005643307.1|	-	0.053	13.8	0.1	0.093	13.0	0.1	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
DUF4384	PF14326.6	gi|384433951|ref|YP_005643309.1|	-	0.058	13.5	1.5	2.9	8.0	0.0	4.0	5	1	0	5	5	5	0	Domain	of	unknown	function	(DUF4384)
LpxD	PF04613.14	gi|384433951|ref|YP_005643309.1|	-	0.11	12.3	0.0	0.71	9.7	0.0	2.1	2	0	0	2	2	2	0	UDP-3-O-[3-hydroxymyristoyl]	glucosamine	N-acyltransferase,	LpxD
BACON	PF13004.7	gi|384433954|ref|YP_005643312.1|	-	0.11	12.5	0.4	0.2	11.7	0.4	1.5	1	0	0	1	1	1	0	Putative	binding	domain,	N-terminal
PriX	PF18689.1	gi|384433956|ref|YP_005643314.1|	-	2.9e-41	139.8	3.8	4.1e-41	139.3	3.8	1.2	1	0	0	1	1	1	1	Primase	X
Na_Pi_cotrans	PF02690.15	gi|384433957|ref|YP_005643315.1|	-	0.082	13.0	3.3	0.096	12.8	3.3	1.0	1	0	0	1	1	1	0	Na+/Pi-cotransporter
RseC_MucC	PF04246.12	gi|384433957|ref|YP_005643315.1|	-	0.086	12.8	1.8	0.091	12.7	1.8	1.0	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
TMEM154	PF15102.6	gi|384433957|ref|YP_005643315.1|	-	0.14	12.1	1.5	0.15	12.0	1.5	1.2	1	0	0	1	1	1	0	TMEM154	protein	family
DUF2530	PF10745.9	gi|384433957|ref|YP_005643315.1|	-	0.2	11.9	5.7	0.26	11.5	5.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2530)
DUF2207	PF09972.9	gi|384433957|ref|YP_005643315.1|	-	5.8	5.5	5.8	6.1	5.5	5.8	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
LysE	PF01810.18	gi|384433958|ref|YP_005643316.1|	-	0.0087	15.5	0.7	0.0087	15.5	0.7	2.1	2	0	0	2	2	2	1	LysE	type	translocator
tRNA-synt_1	PF00133.22	gi|384433959|ref|YP_005643317.1|	-	1.4e-62	211.8	0.3	2e-60	204.7	0.3	2.3	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|384433959|ref|YP_005643317.1|	-	7e-25	87.6	0.2	7.1e-13	48.1	0.0	3.8	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|384433959|ref|YP_005643317.1|	-	2e-21	76.5	4.1	8e-21	74.6	4.1	2.1	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|384433959|ref|YP_005643317.1|	-	1.4e-15	57.5	5.0	1.2e-08	34.7	0.0	3.5	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|384433959|ref|YP_005643317.1|	-	9.3e-09	35.0	0.8	9.3e-09	35.0	0.8	2.4	3	0	0	3	3	3	1	Leucyl-tRNA	synthetase,	Domain	2
Ribosomal_S20p	PF01649.18	gi|384433959|ref|YP_005643317.1|	-	0.12	13.0	4.5	0.38	11.4	1.4	3.1	2	1	1	3	3	3	0	Ribosomal	protein	S20
IU_nuc_hydro	PF01156.19	gi|384433960|ref|YP_005643318.1|	-	4.6e-75	253.0	0.3	5.2e-75	252.8	0.3	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
MazE_antitoxin	PF04014.18	gi|384433961|ref|YP_005643319.1|	-	1.9e-09	37.2	0.2	2.2e-09	37.0	0.2	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|384433961|ref|YP_005643319.1|	-	0.0029	18.0	0.1	0.0033	17.8	0.1	1.1	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
eIF-1a	PF01176.19	gi|384433961|ref|YP_005643319.1|	-	0.006	16.4	0.2	0.0071	16.1	0.2	1.3	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
TPR_12	PF13424.6	gi|384433962|ref|YP_005643320.1|	-	1.3e-09	38.2	11.0	0.0057	16.9	1.5	5.4	4	2	0	5	5	5	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|384433962|ref|YP_005643320.1|	-	1.2e-05	25.1	28.6	0.032	14.4	1.0	7.7	9	0	0	9	9	9	4	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|384433962|ref|YP_005643320.1|	-	0.00043	20.7	10.3	8.7	7.2	0.1	6.3	7	1	1	8	8	8	2	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|384433962|ref|YP_005643320.1|	-	0.00082	19.2	17.9	0.3	11.0	0.3	6.7	8	0	0	8	8	8	2	Tetratricopeptide	repeat
ANAPC3	PF12895.7	gi|384433962|ref|YP_005643320.1|	-	0.0016	18.6	11.6	0.0078	16.4	1.2	4.5	3	2	1	4	4	4	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_19	PF14559.6	gi|384433962|ref|YP_005643320.1|	-	0.014	15.9	11.7	7.9	7.1	0.0	5.6	3	1	3	6	6	6	0	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|384433962|ref|YP_005643320.1|	-	0.019	15.0	19.6	2	8.7	0.0	6.8	9	0	0	9	9	8	0	Tetratricopeptide	repeat
SHNi-TPR	PF10516.9	gi|384433962|ref|YP_005643320.1|	-	0.034	13.6	0.8	7.4	6.1	0.0	3.4	3	0	0	3	3	3	0	SHNi-TPR
TPR_20	PF14561.6	gi|384433962|ref|YP_005643320.1|	-	0.036	14.4	0.3	0.21	11.9	0.0	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|384433962|ref|YP_005643320.1|	-	0.061	13.4	11.5	2.7	8.2	0.5	5.9	5	2	0	5	5	5	0	Tetratricopeptide	repeat
Bromo_TP_like	PF17027.5	gi|384433962|ref|YP_005643320.1|	-	0.19	11.9	9.5	0.16	12.1	2.5	2.9	2	1	0	2	2	2	0	Histone-fold	protein
TPR_1	PF00515.28	gi|384433962|ref|YP_005643320.1|	-	1.3	9.0	15.6	7.9	6.5	0.0	6.3	5	1	0	5	5	5	0	Tetratricopeptide	repeat
FR47	PF08445.10	gi|384433965|ref|YP_005643323.1|	-	0.00061	19.7	0.0	0.00066	19.6	0.0	1.1	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|384433965|ref|YP_005643323.1|	-	0.0014	19.3	0.0	0.0015	19.2	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|384433965|ref|YP_005643323.1|	-	0.0052	16.4	0.0	0.0058	16.2	0.0	1.0	1	0	0	1	1	1	1	GNAT	acetyltransferase
Gly_acyl_tr_C	PF08444.10	gi|384433965|ref|YP_005643323.1|	-	0.011	16.0	0.0	0.011	15.9	0.0	1.0	1	0	0	1	1	1	0	Aralkyl	acyl-CoA:amino	acid	N-acyltransferase,	C-terminal	region
Acetyltransf_1	PF00583.25	gi|384433965|ref|YP_005643323.1|	-	0.039	14.2	0.0	0.041	14.1	0.0	1.0	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	family
BDV_M	PF16520.5	gi|384433967|ref|YP_005643325.1|	-	0.28	11.5	2.1	2.8	8.4	0.1	2.4	1	1	1	2	2	2	0	ssRNA-binding	matrix	protein	of	Bornaviridae
DDE_Tnp_1	PF01609.21	gi|384433968|ref|YP_005643326.1|	-	2.4e-16	60.0	0.0	4.7e-16	59.1	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
Peptidase_A4	PF01828.17	gi|384433973|ref|YP_005643331.1|	-	0.45	9.9	9.1	1	8.8	9.1	1.9	1	1	0	1	1	1	0	Peptidase	A4	family
Holin_9	PF16936.5	gi|384433974|ref|YP_005643332.1|	-	1.1	9.4	6.3	1.4	9.1	0.7	2.4	1	1	0	2	2	2	0	Putative	holin
DUF1700	PF08006.11	gi|384433974|ref|YP_005643332.1|	-	1.3	8.5	11.0	1.7	8.2	11.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
DUF772	PF05598.11	gi|384433975|ref|YP_005643333.1|	-	0.00094	19.2	0.0	0.0023	17.9	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384433975|ref|YP_005643333.1|	-	0.032	13.9	0.0	0.046	13.4	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
SSV1_ORF_D-335	PF07935.11	gi|384433976|ref|YP_005643334.1|	-	6.6e-17	61.6	2.2	9.2e-17	61.1	2.2	1.2	1	0	0	1	1	1	1	ORF	D-335-like	protein
Glycophorin_A	PF01102.18	gi|384433977|ref|YP_005643335.1|	-	0.22	11.8	4.2	0.55	10.5	3.0	2.0	2	0	0	2	2	2	0	Glycophorin	A
Sulfolobus_pRN	PF05584.11	gi|384433978|ref|YP_005643336.1|	-	2.1e-14	53.3	1.3	2.5e-14	53.1	1.3	1.0	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
TrmB	PF01978.19	gi|384433978|ref|YP_005643336.1|	-	0.0017	18.2	0.1	0.0024	17.7	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HxlR	PF01638.17	gi|384433978|ref|YP_005643336.1|	-	0.016	15.0	0.3	0.019	14.8	0.3	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_9	PF08221.11	gi|384433978|ref|YP_005643336.1|	-	0.019	15.0	0.2	0.028	14.5	0.2	1.2	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|384433978|ref|YP_005643336.1|	-	0.021	14.6	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|384433978|ref|YP_005643336.1|	-	0.024	14.7	0.1	0.037	14.1	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|384433978|ref|YP_005643336.1|	-	0.032	14.4	0.1	0.053	13.7	0.1	1.4	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
TFIIE_alpha	PF02002.17	gi|384433978|ref|YP_005643336.1|	-	0.049	13.5	0.1	0.052	13.4	0.1	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Rrf2	PF02082.20	gi|384433978|ref|YP_005643336.1|	-	0.062	13.7	0.1	0.081	13.3	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Cullin	PF00888.22	gi|384433978|ref|YP_005643336.1|	-	0.064	11.9	0.0	0.067	11.8	0.0	1.1	1	0	0	1	1	1	0	Cullin	family
SoPB_HTH	PF18090.1	gi|384433978|ref|YP_005643336.1|	-	0.086	13.0	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Centromere-binding	protein	HTH	domain
MarR_2	PF12802.7	gi|384433978|ref|YP_005643336.1|	-	0.091	12.7	0.1	0.18	11.7	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_26	PF13443.6	gi|384433978|ref|YP_005643336.1|	-	0.096	13.1	0.1	0.29	11.6	0.0	1.8	1	1	1	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_39	PF14090.6	gi|384433978|ref|YP_005643336.1|	-	0.12	12.2	0.1	0.18	11.6	0.1	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
Sin_N	PF04801.13	gi|384433978|ref|YP_005643336.1|	-	0.18	11.0	0.1	0.22	10.7	0.1	1.0	1	0	0	1	1	1	0	Sin-like	protein	conserved	region
DNA_repr_REX1B	PF14966.6	gi|384433979|ref|YP_005643337.1|	-	0.0024	18.5	0.3	0.0027	18.3	0.3	1.1	1	0	0	1	1	1	1	DNA	repair	REX1-B
SpoU_sub_bind	PF08032.12	gi|384433979|ref|YP_005643337.1|	-	0.004	17.4	2.4	1.1	9.6	0.0	2.0	1	1	1	2	2	2	2	RNA	2'-O	ribose	methyltransferase	substrate	binding
Cep57_CLD_2	PF14197.6	gi|384433979|ref|YP_005643337.1|	-	0.007	16.4	3.6	0.0091	16.1	3.6	1.2	1	0	0	1	1	1	1	Centrosome	localisation	domain	of	PPC89
DUF4763	PF15960.5	gi|384433979|ref|YP_005643337.1|	-	0.0089	15.4	2.0	0.0089	15.4	2.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4763)
Interferon	PF00143.19	gi|384433979|ref|YP_005643337.1|	-	0.012	15.9	0.0	0.013	15.7	0.0	1.0	1	0	0	1	1	1	0	Interferon	alpha/beta	domain
HSBP1	PF06825.12	gi|384433979|ref|YP_005643337.1|	-	0.041	13.8	0.2	0.066	13.1	0.2	1.3	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
CREPT	PF16566.5	gi|384433979|ref|YP_005643337.1|	-	0.084	13.0	2.9	0.097	12.8	2.9	1.0	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
RNAse_A_bac	PF18431.1	gi|384433979|ref|YP_005643337.1|	-	0.092	13.7	0.1	0.11	13.5	0.1	1.1	1	0	0	1	1	1	0	Bacterial	CdiA-CT	RNAse	A	domain
Plasmid_RAQPRD	PF09686.10	gi|384433979|ref|YP_005643337.1|	-	0.12	12.6	0.7	0.24	11.6	0.4	1.6	2	0	0	2	2	2	0	Plasmid	protein	of	unknown	function	(Plasmid_RAQPRD)
BRI3BP	PF14965.6	gi|384433979|ref|YP_005643337.1|	-	0.17	11.4	0.6	0.21	11.1	0.6	1.1	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
FlaC_arch	PF05377.11	gi|384433979|ref|YP_005643337.1|	-	0.55	10.7	6.1	0.14	12.5	2.2	1.9	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Pox_A_type_inc	PF04508.12	gi|384433979|ref|YP_005643337.1|	-	1	9.4	8.7	0.19	11.6	3.6	2.3	3	0	0	3	3	3	0	Viral	A-type	inclusion	protein	repeat
ParE_toxin	PF05016.15	gi|384433981|ref|YP_005643339.1|	-	3.9e-06	27.4	0.0	4.8e-06	27.1	0.0	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
ParE_toxin	PF05016.15	gi|384433983|ref|YP_005643341.1|	-	1.8e-05	25.3	0.0	2e-05	25.1	0.0	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
YafQ_toxin	PF15738.5	gi|384433983|ref|YP_005643341.1|	-	0.032	14.5	0.0	0.039	14.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	toxin	of	type	II	toxin-antitoxin	system,	YafQ
IBP39	PF11422.8	gi|384433983|ref|YP_005643341.1|	-	0.037	13.8	0.0	0.05	13.4	0.0	1.2	1	0	0	1	1	1	0	Initiator	binding	protein	39	kDa
Resolvase	PF00239.21	gi|384433984|ref|YP_005643342.1|	-	3.5e-22	79.1	0.1	9.8e-22	77.6	0.1	1.6	2	0	0	2	2	2	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384433984|ref|YP_005643342.1|	-	5.4e-16	58.5	0.6	1.1e-15	57.5	0.6	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR	PF00376.23	gi|384433984|ref|YP_005643342.1|	-	9.8e-07	28.4	0.2	2.1e-06	27.4	0.2	1.6	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_1	PF13411.6	gi|384433984|ref|YP_005643342.1|	-	0.00031	20.8	0.1	0.00084	19.4	0.1	1.8	1	1	0	1	1	1	1	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.6	gi|384433984|ref|YP_005643342.1|	-	0.00037	20.2	0.0	0.00091	19.0	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384433984|ref|YP_005643342.1|	-	0.0024	18.0	0.4	0.0062	16.6	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|384433984|ref|YP_005643342.1|	-	0.012	15.6	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
Phage_AlpA	PF05930.12	gi|384433984|ref|YP_005643342.1|	-	0.018	14.8	0.0	0.036	13.9	0.0	1.5	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
YcxB	PF14317.6	gi|384433984|ref|YP_005643342.1|	-	0.022	14.5	0.1	0.045	13.5	0.1	1.6	1	0	0	1	1	1	0	YcxB-like	protein
HTH_psq	PF05225.16	gi|384433984|ref|YP_005643342.1|	-	0.029	14.1	0.2	0.6	9.9	0.0	2.3	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
FtsH_ext	PF06480.15	gi|384433984|ref|YP_005643342.1|	-	0.071	13.5	0.6	2.6	8.4	0.6	2.2	1	1	0	1	1	1	0	FtsH	Extracellular
Helicase_C	PF00271.31	gi|384433984|ref|YP_005643342.1|	-	0.076	13.4	0.1	6.1	7.2	0.0	2.2	1	1	1	2	2	2	0	Helicase	conserved	C-terminal	domain
ANT	PF03374.14	gi|384433984|ref|YP_005643342.1|	-	0.1	12.9	0.1	0.25	11.6	0.1	1.7	1	1	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
OrfB_Zn_ribbon	PF07282.11	gi|384433985|ref|YP_005643343.1|	-	1.3e-18	66.7	0.0	2.4e-18	65.8	0.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384433985|ref|YP_005643343.1|	-	0.0032	17.7	0.1	0.008	16.4	0.1	1.6	1	0	0	1	1	1	1	Probable	transposase
DUF1286	PF06939.11	gi|384433986|ref|YP_005643344.1|	-	3.3e-48	162.6	8.6	4.3e-48	162.2	8.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1286)
YdjM	PF04307.14	gi|384433986|ref|YP_005643344.1|	-	0.0032	16.8	0.8	0.0049	16.2	0.8	1.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4423	PF14394.6	gi|384433988|ref|YP_005643346.1|	-	0.00027	20.7	0.1	0.0003	20.6	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|384433988|ref|YP_005643346.1|	-	0.00058	19.7	0.0	0.00066	19.5	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
RepL	PF05732.11	gi|384433988|ref|YP_005643346.1|	-	0.0048	16.3	0.1	0.0053	16.2	0.1	1.2	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
DUF3562	PF12085.8	gi|384433988|ref|YP_005643346.1|	-	0.011	15.3	0.0	0.055	13.1	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3562)
Phage_rep_O	PF04492.13	gi|384433988|ref|YP_005643346.1|	-	0.011	16.2	0.1	0.014	15.9	0.1	1.1	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
HTH_5	PF01022.20	gi|384433988|ref|YP_005643346.1|	-	0.013	15.3	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|384433988|ref|YP_005643346.1|	-	0.014	15.7	0.0	0.015	15.6	0.0	1.3	1	1	0	1	1	1	0	Transcriptional	regulator
MarR_2	PF12802.7	gi|384433988|ref|YP_005643346.1|	-	0.03	14.2	0.0	0.045	13.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF4777	PF16007.5	gi|384433988|ref|YP_005643346.1|	-	0.04	14.2	0.0	0.09	13.0	0.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4777)
Sigma70_r4	PF04545.16	gi|384433988|ref|YP_005643346.1|	-	0.04	13.4	0.0	0.1	12.2	0.0	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
FaeA	PF04703.12	gi|384433988|ref|YP_005643346.1|	-	0.047	14.1	0.0	0.048	14.0	0.0	1.1	1	0	0	1	1	1	0	FaeA-like	protein
HTH_9	PF08221.11	gi|384433988|ref|YP_005643346.1|	-	0.076	13.1	0.0	0.18	12.0	0.0	1.6	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
FeoC	PF09012.10	gi|384433988|ref|YP_005643346.1|	-	0.14	12.3	0.0	0.17	12.0	0.0	1.1	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
Sigma70_r4_2	PF08281.12	gi|384433988|ref|YP_005643346.1|	-	0.15	11.7	0.1	0.28	10.9	0.0	1.5	2	0	0	2	2	2	0	Sigma-70,	region	4
VKOR	PF07884.14	gi|384433991|ref|YP_005643349.1|	-	0.0029	17.8	1.6	0.0033	17.6	1.6	1.1	1	0	0	1	1	1	1	Vitamin	K	epoxide	reductase	family
Phage_holin_2_1	PF04971.12	gi|384433991|ref|YP_005643349.1|	-	0.15	12.1	3.5	0.23	11.5	3.5	1.2	1	0	0	1	1	1	0	Bacteriophage	P21	holin	S
DUF1198	PF06711.11	gi|384433993|ref|YP_005643351.1|	-	0.041	14.0	0.7	0.069	13.2	0.4	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1198)
TrwB_AAD_bind	PF10412.9	gi|384433995|ref|YP_005643353.1|	-	2.1e-10	40.1	0.4	0.00033	19.7	0.4	2.3	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.7	gi|384433995|ref|YP_005643353.1|	-	6.6e-09	35.1	0.1	0.00084	18.4	0.0	2.4	2	0	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.17	gi|384433995|ref|YP_005643353.1|	-	1.2e-08	35.3	0.5	4.2e-08	33.6	0.0	2.1	2	1	0	2	2	2	1	Helicase	HerA,	central	domain
ResIII	PF04851.15	gi|384433995|ref|YP_005643353.1|	-	2.2e-06	27.8	4.9	0.001	19.1	0.1	3.6	2	2	1	3	3	3	2	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.6	gi|384433995|ref|YP_005643353.1|	-	1.5e-05	25.2	0.1	0.29	11.4	0.2	2.9	2	1	0	2	2	2	2	AAA	domain
CbiA	PF01656.23	gi|384433995|ref|YP_005643353.1|	-	0.019	15.0	0.1	0.11	12.5	0.0	2.4	2	2	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Bap31_Bap29_C	PF18035.1	gi|384433995|ref|YP_005643353.1|	-	0.02	14.9	0.0	0.056	13.4	0.0	1.8	1	0	0	1	1	1	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
T2SSE	PF00437.20	gi|384433995|ref|YP_005643353.1|	-	0.027	13.5	0.1	0.052	12.6	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
SRP54	PF00448.22	gi|384433995|ref|YP_005643353.1|	-	0.05	13.2	1.0	0.28	10.8	0.0	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DUF1256	PF06866.11	gi|384433995|ref|YP_005643353.1|	-	0.05	13.0	0.0	0.11	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1256)
ABC_tran	PF00005.27	gi|384433995|ref|YP_005643353.1|	-	0.09	13.3	0.0	0.35	11.4	0.0	2.1	1	0	0	1	1	1	0	ABC	transporter
AAA_18	PF13238.6	gi|384433995|ref|YP_005643353.1|	-	0.11	13.1	0.0	0.29	11.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
TraG-D_C	PF12696.7	gi|384433995|ref|YP_005643353.1|	-	0.12	12.3	0.1	0.22	11.5	0.1	1.4	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
DUF2075	PF09848.9	gi|384433995|ref|YP_005643353.1|	-	0.12	11.5	0.0	5.7	6.1	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Synapsin_N	PF10581.9	gi|384433995|ref|YP_005643353.1|	-	0.19	11.7	0.0	0.42	10.6	0.0	1.6	1	0	0	1	1	1	0	Synapsin	N-terminal
DUF3918	PF13056.6	gi|384433997|ref|YP_005643355.1|	-	0.016	14.8	5.3	0.029	14.0	0.2	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3918)
Cation_efflux	PF01545.21	gi|384433997|ref|YP_005643355.1|	-	0.025	14.3	0.2	0.035	13.8	0.2	1.1	1	0	0	1	1	1	0	Cation	efflux	family
DUF2207	PF09972.9	gi|384433997|ref|YP_005643355.1|	-	0.045	12.5	0.5	0.057	12.2	0.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
SfLAP	PF11139.8	gi|384433997|ref|YP_005643355.1|	-	0.057	12.9	0.0	0.065	12.7	0.0	1.1	1	0	0	1	1	1	0	Sap,	sulfolipid-1-addressing	protein
DNA_pol3_a_NI	PF14480.6	gi|384433998|ref|YP_005643356.1|	-	0.056	13.4	0.0	0.067	13.2	0.0	1.4	1	0	0	1	1	1	0	DNA	polymerase	III	polC-type	N-terminus	I
MSA-2c	PF12238.8	gi|384433999|ref|YP_005643357.1|	-	0.2	11.6	0.8	0.2	11.6	0.8	1.0	1	0	0	1	1	1	0	Merozoite	surface	antigen	2c
SWIM	PF04434.17	gi|384434000|ref|YP_005643358.1|	-	0.0023	17.5	0.1	0.0036	16.9	0.1	1.2	1	0	0	1	1	1	1	SWIM	zinc	finger
cwf21	PF08312.12	gi|384434000|ref|YP_005643358.1|	-	0.034	14.3	0.1	0.054	13.7	0.1	1.4	1	0	0	1	1	1	0	cwf21	domain
DUF3591	PF12157.8	gi|384434000|ref|YP_005643358.1|	-	0.064	11.9	1.5	0.69	8.5	0.0	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3591)
Myb_DNA-bind_4	PF13837.6	gi|384434001|ref|YP_005643359.1|	-	0.0033	17.8	0.1	0.0036	17.7	0.1	1.1	1	0	0	1	1	1	1	Myb/SANT-like	DNA-binding	domain
Asp_protease_2	PF13650.6	gi|384434002|ref|YP_005643360.1|	-	0.0031	18.1	0.0	0.0044	17.6	0.0	1.2	1	0	0	1	1	1	1	Aspartyl	protease
PapD-like	PF14874.6	gi|384434002|ref|YP_005643360.1|	-	0.059	13.5	0.1	0.12	12.5	0.1	1.5	1	1	0	1	1	1	0	Flagellar-associated	PapD-like
gag-asp_proteas	PF13975.6	gi|384434002|ref|YP_005643360.1|	-	0.13	12.9	0.0	0.16	12.5	0.0	1.2	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
MarR_2	PF12802.7	gi|384434003|ref|YP_005643361.1|	-	2.6e-07	30.4	0.0	4.2e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|384434003|ref|YP_005643361.1|	-	2.2e-05	24.6	0.2	4.3e-05	23.6	0.2	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|384434003|ref|YP_005643361.1|	-	7.3e-05	22.6	0.0	0.00011	22.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
RPA_C	PF08784.11	gi|384434003|ref|YP_005643361.1|	-	0.0001	22.9	0.0	0.00015	22.3	0.0	1.2	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
TrmB	PF01978.19	gi|384434003|ref|YP_005643361.1|	-	0.00024	20.9	0.5	0.00035	20.4	0.5	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HxlR	PF01638.17	gi|384434003|ref|YP_005643361.1|	-	0.00081	19.2	0.7	0.00085	19.1	0.7	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_24	PF13412.6	gi|384434003|ref|YP_005643361.1|	-	0.0014	18.1	0.0	0.0028	17.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|384434003|ref|YP_005643361.1|	-	0.0029	17.4	0.2	0.0059	16.5	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384434003|ref|YP_005643361.1|	-	0.0032	17.5	0.0	0.0045	17.0	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|384434003|ref|YP_005643361.1|	-	0.0048	16.5	0.1	0.0069	16.0	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
B-block_TFIIIC	PF04182.12	gi|384434003|ref|YP_005643361.1|	-	0.0061	16.7	0.1	0.0071	16.5	0.1	1.3	1	1	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
Rrf2	PF02082.20	gi|384434003|ref|YP_005643361.1|	-	0.0071	16.7	0.2	0.014	15.7	0.0	1.5	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_40	PF14493.6	gi|384434003|ref|YP_005643361.1|	-	0.0087	16.5	0.1	0.012	16.0	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|384434003|ref|YP_005643361.1|	-	0.019	15.1	0.0	0.032	14.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|384434003|ref|YP_005643361.1|	-	0.021	14.6	0.2	0.026	14.3	0.2	1.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_9	PF08221.11	gi|384434003|ref|YP_005643361.1|	-	0.025	14.7	0.1	0.064	13.4	0.0	1.7	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|384434003|ref|YP_005643361.1|	-	0.041	13.6	0.1	0.13	12.1	0.0	1.8	1	1	1	2	2	2	0	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|384434003|ref|YP_005643361.1|	-	0.045	13.6	0.0	0.079	12.8	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_45	PF14947.6	gi|384434003|ref|YP_005643361.1|	-	0.046	13.7	0.6	0.071	13.1	0.6	1.4	1	1	0	1	1	1	0	Winged	helix-turn-helix
HTH_11	PF08279.12	gi|384434003|ref|YP_005643361.1|	-	0.054	13.4	0.8	0.085	12.8	0.1	1.7	2	0	0	2	2	2	0	HTH	domain
Penicillinase_R	PF03965.16	gi|384434003|ref|YP_005643361.1|	-	0.059	13.7	0.1	0.064	13.6	0.1	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_27	PF13463.6	gi|384434003|ref|YP_005643361.1|	-	0.099	13.1	0.0	0.13	12.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384434004|ref|YP_005643362.1|	-	4.1e-07	29.8	0.2	5.6e-07	29.3	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|384434004|ref|YP_005643362.1|	-	2.9e-06	27.7	0.0	4.6e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|384434004|ref|YP_005643362.1|	-	3.9e-06	26.8	0.4	5.1e-06	26.4	0.4	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|384434004|ref|YP_005643362.1|	-	6.8e-06	26.2	0.3	9.8e-06	25.7	0.3	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384434004|ref|YP_005643362.1|	-	4.7e-05	22.9	0.3	0.00037	20.0	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
DUF4364	PF14277.6	gi|384434004|ref|YP_005643362.1|	-	8.9e-05	22.3	0.2	0.00011	22.0	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF3116	PF11313.8	gi|384434004|ref|YP_005643362.1|	-	0.0003	20.6	0.3	0.00042	20.1	0.2	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3116)
HxlR	PF01638.17	gi|384434004|ref|YP_005643362.1|	-	0.00052	19.8	0.3	0.00068	19.4	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_5	PF01022.20	gi|384434004|ref|YP_005643362.1|	-	0.0025	17.7	0.0	0.0038	17.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|384434004|ref|YP_005643362.1|	-	0.0032	17.3	0.0	0.0051	16.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
S10_plectin	PF03501.15	gi|384434004|ref|YP_005643362.1|	-	0.022	14.8	0.0	0.026	14.6	0.0	1.2	1	0	0	1	1	1	0	Plectin/S10	domain
DUF2582	PF10771.9	gi|384434004|ref|YP_005643362.1|	-	0.028	14.6	0.0	0.043	14.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	domain	(DUF2582)
DUF1495	PF07381.11	gi|384434004|ref|YP_005643362.1|	-	0.068	13.0	0.2	2.1	8.2	0.2	2.1	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
ParBc	PF02195.18	gi|384434005|ref|YP_005643363.1|	-	8.8e-10	38.8	0.3	2.5e-09	37.3	0.1	2.0	2	0	0	2	2	2	1	ParB-like	nuclease	domain
DUF3235	PF11574.8	gi|384434005|ref|YP_005643363.1|	-	0.00078	20.3	1.8	0.4	11.6	0.0	2.8	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF3235)
CAP59_mtransfer	PF11735.8	gi|384434005|ref|YP_005643363.1|	-	0.0043	16.8	1.4	0.0089	15.7	1.4	1.5	1	0	0	1	1	1	1	Cryptococcal	mannosyltransferase	1
Terminase_5	PF06056.12	gi|384434005|ref|YP_005643363.1|	-	0.011	15.6	0.1	0.058	13.3	0.0	2.1	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
SSFA2_C	PF14723.6	gi|384434005|ref|YP_005643363.1|	-	0.021	14.7	0.1	0.056	13.3	0.1	1.7	1	0	0	1	1	1	0	Sperm-specific	antigen	2	C-terminus
ATG13	PF10033.9	gi|384434005|ref|YP_005643363.1|	-	0.031	14.0	1.5	0.063	13.0	1.5	1.5	1	0	0	1	1	1	0	Autophagy-related	protein	13
HU-CCDC81_bac_2	PF18175.1	gi|384434005|ref|YP_005643363.1|	-	0.053	13.4	1.6	0.29	11.0	1.1	2.6	2	0	0	2	2	2	0	CCDC81-like	prokaryotic	HU	domain	2
RR_TM4-6	PF06459.12	gi|384434005|ref|YP_005643363.1|	-	5.3	6.8	17.5	2.8	7.7	7.5	2.2	2	0	0	2	2	2	0	Ryanodine	Receptor	TM	4-6
Helicase_C_2	PF13307.6	gi|384434006|ref|YP_005643364.1|	-	5.9e-23	81.9	0.0	1.8e-22	80.3	0.0	1.8	2	0	0	2	2	2	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|384434006|ref|YP_005643364.1|	-	1.3e-13	51.0	0.4	1.5e-12	47.5	0.1	2.3	1	1	1	2	2	2	1	DEAD_2
ResIII	PF04851.15	gi|384434006|ref|YP_005643364.1|	-	8.2e-09	35.7	2.4	9.6e-08	32.2	2.4	2.3	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|384434006|ref|YP_005643364.1|	-	0.053	13.3	0.0	4.2	7.1	0.0	2.4	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
DUF2075	PF09848.9	gi|384434006|ref|YP_005643364.1|	-	0.074	12.3	0.1	0.91	8.7	0.0	2.4	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
T2SSE	PF00437.20	gi|384434006|ref|YP_005643364.1|	-	0.18	10.8	0.2	0.31	10.1	0.2	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
ParBc	PF02195.18	gi|384434009|ref|YP_005643367.1|	-	2.9e-06	27.5	0.1	9.6e-06	25.8	0.0	1.9	2	0	0	2	2	2	1	ParB-like	nuclease	domain
Mac	PF12464.8	gi|384434009|ref|YP_005643367.1|	-	0.14	12.5	2.7	0.15	12.3	0.4	2.3	2	0	0	2	2	2	0	Maltose	acetyltransferase
HTH_27	PF13463.6	gi|384434010|ref|YP_005643368.1|	-	2.2e-08	34.5	0.0	2.8e-08	34.2	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|384434010|ref|YP_005643368.1|	-	1.9e-06	27.8	0.7	2.3e-06	27.5	0.7	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|384434010|ref|YP_005643368.1|	-	1.6e-05	24.7	0.5	7.4e-05	22.6	0.3	1.9	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4364	PF14277.6	gi|384434010|ref|YP_005643368.1|	-	5.1e-05	23.1	0.0	6.1e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_47	PF16221.5	gi|384434010|ref|YP_005643368.1|	-	0.00017	21.1	0.0	0.00029	20.3	0.0	1.4	1	0	0	1	1	1	1	winged	helix-turn-helix
HTH_24	PF13412.6	gi|384434010|ref|YP_005643368.1|	-	0.00073	19.0	0.8	0.0024	17.4	0.1	2.2	2	2	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HxlR	PF01638.17	gi|384434010|ref|YP_005643368.1|	-	0.00098	18.9	0.4	0.0013	18.5	0.4	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR_2	PF12802.7	gi|384434010|ref|YP_005643368.1|	-	0.0061	16.4	0.0	0.016	15.1	0.0	1.6	2	0	0	2	2	2	1	MarR	family
Rrf2	PF02082.20	gi|384434010|ref|YP_005643368.1|	-	0.0065	16.8	0.1	0.0081	16.5	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_23	PF13384.6	gi|384434010|ref|YP_005643368.1|	-	0.02	14.7	0.0	0.068	13.0	0.0	1.8	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_5	PF01022.20	gi|384434010|ref|YP_005643368.1|	-	0.029	14.2	0.6	0.1	12.5	0.1	2.0	2	1	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF742	PF05331.11	gi|384434010|ref|YP_005643368.1|	-	0.074	12.9	0.0	0.15	11.9	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_29	PF13551.6	gi|384434010|ref|YP_005643368.1|	-	0.12	12.4	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
TrmB	PF01978.19	gi|384434011|ref|YP_005643369.1|	-	5.1e-09	35.9	0.5	6.7e-09	35.5	0.4	1.3	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|384434011|ref|YP_005643369.1|	-	6.8e-09	35.5	0.0	8.6e-09	35.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|384434011|ref|YP_005643369.1|	-	4.7e-07	29.3	0.6	6.9e-07	28.7	0.6	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|384434011|ref|YP_005643369.1|	-	9.7e-07	28.6	0.1	1.5e-06	28.1	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|384434011|ref|YP_005643369.1|	-	3.9e-06	27.3	0.2	5.2e-06	26.9	0.2	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|384434011|ref|YP_005643369.1|	-	1.3e-05	25.1	0.3	1.6e-05	24.8	0.3	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|384434011|ref|YP_005643369.1|	-	6.9e-05	23.0	0.2	7.7e-05	22.8	0.2	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|384434011|ref|YP_005643369.1|	-	0.00017	21.8	0.0	0.00029	21.1	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
B-block_TFIIIC	PF04182.12	gi|384434011|ref|YP_005643369.1|	-	0.0008	19.5	0.1	0.00099	19.2	0.1	1.3	1	1	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HxlR	PF01638.17	gi|384434011|ref|YP_005643369.1|	-	0.0013	18.6	0.3	0.0014	18.4	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_11	PF08279.12	gi|384434011|ref|YP_005643369.1|	-	0.0015	18.5	0.6	0.0022	17.9	0.4	1.4	1	1	0	1	1	1	1	HTH	domain
PadR	PF03551.14	gi|384434011|ref|YP_005643369.1|	-	0.003	17.5	0.6	0.0041	17.0	0.6	1.4	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_3	PF01381.22	gi|384434011|ref|YP_005643369.1|	-	0.0058	16.7	0.1	0.014	15.4	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix
OapA	PF04225.12	gi|384434011|ref|YP_005643369.1|	-	0.0066	16.5	0.0	0.008	16.3	0.0	1.2	1	0	0	1	1	1	1	Opacity-associated	protein	A	LysM-like	domain
TBPIP	PF07106.13	gi|384434011|ref|YP_005643369.1|	-	0.014	15.3	0.4	0.022	14.7	0.3	1.6	1	1	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
HTH_IclR	PF09339.10	gi|384434011|ref|YP_005643369.1|	-	0.017	14.9	0.0	0.03	14.1	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|384434011|ref|YP_005643369.1|	-	0.028	14.0	0.1	0.031	13.9	0.1	1.3	1	0	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
RPA_C	PF08784.11	gi|384434011|ref|YP_005643369.1|	-	0.035	14.8	0.0	0.055	14.1	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Ribosomal_S19e	PF01090.19	gi|384434011|ref|YP_005643369.1|	-	0.047	13.4	0.1	0.055	13.2	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HTH_46	PF15977.5	gi|384434011|ref|YP_005643369.1|	-	0.05	13.6	0.1	0.087	12.8	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA	binding
HTH_19	PF12844.7	gi|384434011|ref|YP_005643369.1|	-	0.05	13.6	0.6	0.17	11.9	0.5	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
CUTL	PF16557.5	gi|384434011|ref|YP_005643369.1|	-	0.053	13.7	0.0	0.075	13.2	0.0	1.3	1	0	0	1	1	1	0	CUT1-like	DNA-binding	domain	of	SATB
HTH_26	PF13443.6	gi|384434011|ref|YP_005643369.1|	-	0.06	13.8	0.1	0.11	12.9	0.1	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
IF3_C	PF00707.22	gi|384434011|ref|YP_005643369.1|	-	0.061	13.3	0.1	0.13	12.2	0.0	1.6	1	1	1	2	2	2	0	Translation	initiation	factor	IF-3,	C-terminal	domain
HTH_9	PF08221.11	gi|384434011|ref|YP_005643369.1|	-	0.072	13.2	0.3	0.17	12.0	0.1	1.7	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_Tnp_Tc3_1	PF11427.8	gi|384434011|ref|YP_005643369.1|	-	0.077	12.9	0.3	0.15	11.9	0.1	1.7	2	1	0	2	2	2	0	Tc3	transposase
DUF1841	PF08897.11	gi|384434012|ref|YP_005643370.1|	-	0.024	14.7	0.1	0.031	14.3	0.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1841)
DUF3921	PF13060.6	gi|384434012|ref|YP_005643370.1|	-	0.054	13.5	0.1	0.083	12.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3921)
Fic	PF02661.18	gi|384434013|ref|YP_005643371.1|	-	3.6e-09	37.4	0.0	1.2e-08	35.7	0.0	1.9	1	1	0	1	1	1	1	Fic/DOC	family
TrmB	PF01978.19	gi|384434014|ref|YP_005643372.1|	-	7.4e-06	25.8	0.3	1.4e-05	24.8	0.3	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|384434014|ref|YP_005643372.1|	-	2.7e-05	24.0	0.0	4.1e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|384434014|ref|YP_005643372.1|	-	0.00016	22.1	0.1	0.00023	21.6	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384434014|ref|YP_005643372.1|	-	0.0002	20.9	0.0	0.00033	20.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|384434014|ref|YP_005643372.1|	-	0.0014	18.6	0.1	0.0023	17.9	0.1	1.4	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|384434014|ref|YP_005643372.1|	-	0.0029	17.8	0.1	0.0036	17.4	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|384434014|ref|YP_005643372.1|	-	0.0034	17.0	0.2	0.0063	16.1	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
DUF1495	PF07381.11	gi|384434014|ref|YP_005643372.1|	-	0.0037	17.1	0.1	0.012	15.4	0.1	1.9	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_11	PF08279.12	gi|384434014|ref|YP_005643372.1|	-	0.0083	16.0	0.2	0.023	14.6	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HxlR	PF01638.17	gi|384434014|ref|YP_005643372.1|	-	0.012	15.4	0.2	0.015	15.1	0.2	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF2250	PF10007.9	gi|384434014|ref|YP_005643372.1|	-	0.057	13.5	0.1	0.18	11.9	0.1	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF2397	PF09660.10	gi|384434014|ref|YP_005643372.1|	-	0.06	12.3	0.0	0.062	12.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2397)
Ribosomal_S19e	PF01090.19	gi|384434014|ref|YP_005643372.1|	-	0.099	12.3	0.0	0.12	12.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S19e
LexA_DNA_bind	PF01726.16	gi|384434014|ref|YP_005643372.1|	-	0.14	11.9	0.1	29	4.5	0.0	2.9	2	1	0	3	3	3	0	LexA	DNA	binding	domain
SWIM	PF04434.17	gi|384434015|ref|YP_005643373.1|	-	0.00053	19.6	0.1	0.00075	19.1	0.1	1.2	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF3591	PF12157.8	gi|384434015|ref|YP_005643373.1|	-	0.1	11.2	1.6	4.7	5.8	0.8	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3591)
DNA_pol3_a_NI	PF14480.6	gi|384434017|ref|YP_005643375.1|	-	0.056	13.4	0.0	0.067	13.2	0.0	1.4	1	0	0	1	1	1	0	DNA	polymerase	III	polC-type	N-terminus	I
MgtE	PF01769.16	gi|384434019|ref|YP_005643377.1|	-	0.00021	21.7	1.2	0.14	12.5	0.0	2.1	2	0	0	2	2	2	2	Divalent	cation	transporter
DUF624	PF04854.14	gi|384434019|ref|YP_005643377.1|	-	0.01	15.9	0.0	0.01	15.9	0.0	2.6	3	1	0	3	3	3	0	Protein	of	unknown	function,	DUF624
DUF4956	PF16316.5	gi|384434019|ref|YP_005643377.1|	-	0.66	9.6	6.7	0.46	10.1	0.5	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4956)
CitMHS_2	PF16980.5	gi|384434020|ref|YP_005643378.1|	-	0.022	13.4	0.0	0.023	13.3	0.0	1.1	1	0	0	1	1	1	0	Putative	citrate	transport
DUF202	PF02656.15	gi|384434020|ref|YP_005643378.1|	-	0.036	14.5	2.0	5.5	7.5	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
TraT	PF05818.12	gi|384434020|ref|YP_005643378.1|	-	0.069	12.8	1.4	0.075	12.7	1.4	1.1	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
DUF5488	PF17590.2	gi|384434020|ref|YP_005643378.1|	-	0.11	12.3	0.5	0.15	11.8	0.5	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5488)
YtpI	PF14007.6	gi|384434020|ref|YP_005643378.1|	-	0.12	12.5	2.5	0.87	9.8	2.2	2.1	1	1	1	2	2	2	0	YtpI-like	protein
DUF2207	PF09972.9	gi|384434021|ref|YP_005643379.1|	-	0.00045	19.1	3.2	0.00057	18.8	3.2	1.3	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
TrwB_AAD_bind	PF10412.9	gi|384434023|ref|YP_005643381.1|	-	8.3e-18	64.5	1.0	5e-12	45.4	1.5	2.4	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|384434023|ref|YP_005643381.1|	-	1.3e-13	51.0	0.6	3.7e-13	49.6	0.0	2.0	2	0	0	2	2	1	1	TraM	recognition	site	of	TraD	and	TraG
DUF87	PF01935.17	gi|384434023|ref|YP_005643381.1|	-	4.1e-09	36.9	1.1	4.1e-09	36.9	1.1	3.1	3	0	0	3	3	3	1	Helicase	HerA,	central	domain
T4SS-DNA_transf	PF02534.14	gi|384434023|ref|YP_005643381.1|	-	1.3e-07	30.9	0.6	0.00015	20.7	1.4	2.3	2	0	0	2	2	2	2	Type	IV	secretory	system	Conjugative	DNA	transfer
AAA_22	PF13401.6	gi|384434023|ref|YP_005643381.1|	-	1.5e-06	28.6	0.2	0.1	12.9	0.0	3.5	3	0	0	3	3	3	2	AAA	domain
DUF853	PF05872.12	gi|384434023|ref|YP_005643381.1|	-	5.1e-06	25.4	0.0	2.4e-05	23.1	0.0	2.0	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.18	gi|384434023|ref|YP_005643381.1|	-	8.4e-06	25.3	0.0	0.0033	16.8	0.0	2.7	3	0	0	3	3	3	1	FtsK/SpoIIIE	family
AAA_30	PF13604.6	gi|384434023|ref|YP_005643381.1|	-	0.0072	16.1	0.0	0.22	11.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|384434023|ref|YP_005643381.1|	-	0.017	14.4	0.0	0.043	13.1	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
ABC_tran	PF00005.27	gi|384434023|ref|YP_005643381.1|	-	0.02	15.4	0.2	0.19	12.3	0.0	2.6	2	0	0	2	2	2	0	ABC	transporter
DUF4263	PF14082.6	gi|384434023|ref|YP_005643381.1|	-	0.025	14.9	2.3	1	9.6	0.9	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4263)
AAA_21	PF13304.6	gi|384434023|ref|YP_005643381.1|	-	0.026	14.3	0.1	0.026	14.3	0.1	2.5	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RNA_helicase	PF00910.22	gi|384434023|ref|YP_005643381.1|	-	0.029	14.8	0.0	0.27	11.6	0.0	2.5	2	0	0	2	2	2	0	RNA	helicase
T2SSE	PF00437.20	gi|384434023|ref|YP_005643381.1|	-	0.031	13.3	0.1	0.18	10.8	0.0	2.3	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|384434023|ref|YP_005643381.1|	-	0.035	14.5	0.0	0.36	11.2	0.0	2.7	1	1	0	1	1	1	0	AAA	ATPase	domain
LPD11	PF18824.1	gi|384434023|ref|YP_005643381.1|	-	0.16	12.1	2.7	1.3	9.2	0.4	2.8	2	0	0	2	2	2	0	Large	polyvalent	protein-associated	domain	11
DXP_reductoisom	PF02670.16	gi|384434023|ref|YP_005643381.1|	-	0.23	12.2	1.3	1.3	9.7	0.0	3.0	3	0	0	3	3	3	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
MRP-S22	PF10245.9	gi|384434024|ref|YP_005643382.1|	-	0.0024	17.6	0.9	0.003	17.3	0.9	1.2	1	0	0	1	1	1	1	Mitochondrial	28S	ribosomal	protein	S22
YmgB	PF10798.8	gi|384434024|ref|YP_005643382.1|	-	0.038	13.8	0.6	0.096	12.5	0.6	1.7	1	0	0	1	1	1	0	Biofilm	development	protein	YmgB/AriR
Phlebovirus_NSM	PF07246.11	gi|384434024|ref|YP_005643382.1|	-	0.15	11.4	6.5	0.19	11.1	6.5	1.1	1	0	0	1	1	1	0	Phlebovirus	nonstructural	protein	NS-M
Tfb5	PF06331.12	gi|384434024|ref|YP_005643382.1|	-	0.35	10.9	3.1	3.7	7.6	0.1	2.8	2	1	0	2	2	2	0	Transcription	factor	TFIIH	complex	subunit	Tfb5
HTH_45	PF14947.6	gi|384434027|ref|YP_005643385.1|	-	0.0019	18.2	0.3	0.0044	17.0	0.3	1.6	1	1	1	2	2	2	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|384434027|ref|YP_005643385.1|	-	0.0034	17.2	0.0	0.0057	16.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|384434027|ref|YP_005643385.1|	-	0.0086	16.6	0.0	0.014	15.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
SLH	PF00395.20	gi|384434027|ref|YP_005643385.1|	-	0.052	13.6	0.0	0.17	11.9	0.0	1.8	2	0	0	2	2	2	0	S-layer	homology	domain
TED	PF08341.11	gi|384434027|ref|YP_005643385.1|	-	0.053	13.9	0.0	0.068	13.5	0.0	1.3	1	0	0	1	1	1	0	Thioester	domain
DUF4423	PF14394.6	gi|384434027|ref|YP_005643385.1|	-	0.086	12.5	0.0	0.13	12.0	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_24	PF13412.6	gi|384434028|ref|YP_005643386.1|	-	3.5e-06	26.5	0.1	1.5e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|384434028|ref|YP_005643386.1|	-	2.3e-05	24.2	0.1	7.3e-05	22.6	0.0	1.7	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
RPA_C	PF08784.11	gi|384434028|ref|YP_005643386.1|	-	4.7e-05	24.0	0.0	7.2e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
MarR_2	PF12802.7	gi|384434028|ref|YP_005643386.1|	-	8e-05	22.4	0.0	0.00013	21.8	0.0	1.3	1	1	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|384434028|ref|YP_005643386.1|	-	0.00018	21.6	0.0	0.00022	21.3	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_27	PF13463.6	gi|384434028|ref|YP_005643386.1|	-	0.0033	17.9	0.0	0.0064	17.0	0.0	1.5	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|384434028|ref|YP_005643386.1|	-	0.011	16.1	0.0	0.023	15.0	0.0	1.5	2	0	0	2	2	2	0	Transcriptional	regulator
DUF1495	PF07381.11	gi|384434028|ref|YP_005643386.1|	-	0.028	14.2	0.0	0.79	9.6	0.0	2.1	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
TFIIE_alpha	PF02002.17	gi|384434028|ref|YP_005643386.1|	-	0.042	13.7	0.6	0.078	12.9	0.6	1.5	1	1	0	1	1	1	0	TFIIE	alpha	subunit
HTH_36	PF13730.6	gi|384434028|ref|YP_005643386.1|	-	0.05	13.6	0.0	0.099	12.6	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF2774	PF11242.8	gi|384434028|ref|YP_005643386.1|	-	0.06	13.6	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2774)
HxlR	PF01638.17	gi|384434028|ref|YP_005643386.1|	-	0.063	13.1	0.0	0.085	12.7	0.0	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_9	PF08221.11	gi|384434028|ref|YP_005643386.1|	-	0.066	13.3	0.0	0.16	12.1	0.0	1.6	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_45	PF14947.6	gi|384434028|ref|YP_005643386.1|	-	0.097	12.7	0.1	0.15	12.1	0.1	1.3	1	1	0	1	1	1	0	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|384434028|ref|YP_005643386.1|	-	0.14	12.0	0.0	0.28	11.1	0.0	1.5	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF3201	PF11447.8	gi|384434030|ref|YP_005643388.1|	-	0.038	13.5	0.1	0.065	12.8	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3201)
OrfB_Zn_ribbon	PF07282.11	gi|384434031|ref|YP_005643389.1|	-	8.3e-22	76.9	0.8	8.3e-22	76.9	0.8	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434031|ref|YP_005643389.1|	-	9.4e-05	22.6	1.2	0.00021	21.5	0.3	2.0	3	0	0	3	3	3	1	Probable	transposase
DUF2381	PF09544.10	gi|384434031|ref|YP_005643389.1|	-	0.046	13.2	0.0	0.071	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2381)
Nup54_57_C	PF18570.1	gi|384434031|ref|YP_005643389.1|	-	0.075	12.6	0.9	0.22	11.2	0.1	2.2	2	0	0	2	2	2	0	NUP57/Nup54	C-terminal	domain
zf-RING_4	PF14570.6	gi|384434031|ref|YP_005643389.1|	-	0.079	12.8	2.1	0.094	12.5	1.1	1.6	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
YhfH	PF14149.6	gi|384434031|ref|YP_005643389.1|	-	0.15	12.1	0.6	0.66	10.0	0.3	2.1	2	0	0	2	2	2	0	YhfH-like	protein
DUF643	PF04867.12	gi|384434031|ref|YP_005643389.1|	-	0.21	12.2	1.2	0.57	10.8	1.2	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF643)
SWIM	PF04434.17	gi|384434033|ref|YP_005643391.1|	-	0.039	13.6	0.1	0.055	13.1	0.1	1.3	1	0	0	1	1	1	0	SWIM	zinc	finger
ParE_toxin	PF05016.15	gi|384434035|ref|YP_005643393.1|	-	0.0016	19.0	1.2	0.0019	18.8	1.2	1.2	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
ERp29	PF07749.12	gi|384434035|ref|YP_005643393.1|	-	0.084	13.8	1.5	0.13	13.2	1.5	1.2	1	0	0	1	1	1	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
HTH_IclR	PF09339.10	gi|384434036|ref|YP_005643394.1|	-	2e-06	27.5	1.3	3.9e-06	26.6	0.2	2.0	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|384434036|ref|YP_005643394.1|	-	8.2e-06	25.6	0.2	1.2e-05	25.1	0.2	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|384434036|ref|YP_005643394.1|	-	0.00042	20.7	0.2	0.00067	20.1	0.2	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384434036|ref|YP_005643394.1|	-	0.00062	19.3	1.8	0.00078	19.0	0.8	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HxlR	PF01638.17	gi|384434036|ref|YP_005643394.1|	-	0.00087	19.1	0.6	0.0014	18.5	0.6	1.5	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
Rrf2	PF02082.20	gi|384434036|ref|YP_005643394.1|	-	0.00099	19.4	0.6	0.0061	16.9	0.1	1.9	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_9	PF08221.11	gi|384434036|ref|YP_005643394.1|	-	0.0019	18.3	0.2	0.0044	17.1	0.1	1.6	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
TrmB	PF01978.19	gi|384434036|ref|YP_005643394.1|	-	0.0024	17.7	0.8	0.0034	17.2	0.6	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|384434036|ref|YP_005643394.1|	-	0.0033	17.3	0.3	0.0044	17.0	0.3	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_19	PF12844.7	gi|384434036|ref|YP_005643394.1|	-	0.0057	16.6	0.5	0.021	14.9	0.5	2.0	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|384434036|ref|YP_005643394.1|	-	0.0095	16.1	0.1	0.013	15.7	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
SpoU_methylase	PF00588.19	gi|384434036|ref|YP_005643394.1|	-	0.013	15.7	0.0	0.058	13.6	0.0	1.8	1	1	1	2	2	2	0	SpoU	rRNA	Methylase	family
HTH_20	PF12840.7	gi|384434036|ref|YP_005643394.1|	-	0.023	14.8	0.8	0.059	13.4	0.7	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|384434036|ref|YP_005643394.1|	-	0.035	13.7	0.8	0.06	13.0	0.8	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Phage_rep_O	PF04492.13	gi|384434036|ref|YP_005643394.1|	-	0.048	14.2	0.2	0.081	13.5	0.1	1.5	1	1	0	1	1	1	0	Bacteriophage	replication	protein	O
RPA_C	PF08784.11	gi|384434036|ref|YP_005643394.1|	-	0.083	13.6	0.0	0.11	13.2	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_45	PF14947.6	gi|384434037|ref|YP_005643395.1|	-	1.6e-10	40.8	1.2	2e-10	40.5	1.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|384434037|ref|YP_005643395.1|	-	4.7e-06	26.4	0.1	6.6e-06	25.9	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|384434037|ref|YP_005643395.1|	-	2.8e-05	24.4	0.0	3.7e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_20	PF12840.7	gi|384434037|ref|YP_005643395.1|	-	5.9e-05	23.0	0.0	7.8e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4364	PF14277.6	gi|384434037|ref|YP_005643395.1|	-	8.3e-05	22.4	0.2	0.0001	22.1	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_IclR	PF09339.10	gi|384434037|ref|YP_005643395.1|	-	0.0033	17.2	0.0	0.0044	16.8	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|384434037|ref|YP_005643395.1|	-	0.0049	16.8	0.9	0.0057	16.6	0.1	1.5	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.7	gi|384434037|ref|YP_005643395.1|	-	0.0053	16.6	0.0	0.0076	16.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Mrr_N	PF14338.6	gi|384434037|ref|YP_005643395.1|	-	0.0065	16.6	0.1	0.046	13.8	0.1	1.9	1	1	1	2	2	2	1	Mrr	N-terminal	domain
Ribosomal_S19e	PF01090.19	gi|384434037|ref|YP_005643395.1|	-	0.0088	15.7	0.0	0.012	15.4	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19e
TFIIE_beta	PF02186.15	gi|384434037|ref|YP_005643395.1|	-	0.015	15.6	0.3	0.028	14.7	0.1	1.5	1	1	0	1	1	1	0	TFIIE	beta	subunit	core	domain
AAA_assoc_C	PF09821.9	gi|384434037|ref|YP_005643395.1|	-	0.016	15.7	0.1	0.033	14.7	0.1	1.5	1	1	0	1	1	1	0	C-terminal	AAA-associated	domain
HTH_40	PF14493.6	gi|384434037|ref|YP_005643395.1|	-	0.019	15.4	0.5	0.022	15.2	0.5	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|384434037|ref|YP_005643395.1|	-	0.028	14.2	0.0	0.045	13.6	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_24	PF13412.6	gi|384434037|ref|YP_005643395.1|	-	0.037	13.6	0.4	0.057	13.0	0.0	1.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF742	PF05331.11	gi|384434037|ref|YP_005643395.1|	-	0.048	13.5	0.0	0.05	13.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
DUF2089	PF09862.9	gi|384434037|ref|YP_005643395.1|	-	0.058	13.4	0.3	0.095	12.7	0.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
HTH_27	PF13463.6	gi|384434037|ref|YP_005643395.1|	-	0.073	13.6	0.1	0.13	12.7	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|384434037|ref|YP_005643395.1|	-	0.15	11.9	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
ParBc	PF02195.18	gi|384434038|ref|YP_005643396.1|	-	0.0076	16.5	0.0	0.0081	16.4	0.0	1.1	1	0	0	1	1	1	1	ParB-like	nuclease	domain
DUF1322	PF07032.11	gi|384434038|ref|YP_005643396.1|	-	0.025	15.1	0.1	0.038	14.5	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1322)
Urocanase	PF01175.18	gi|384434040|ref|YP_005643398.1|	-	0.12	12.0	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
mRNA_cap_C	PF03919.15	gi|384434040|ref|YP_005643398.1|	-	0.23	12.1	2.3	0.49	11.1	2.3	1.7	1	1	0	1	1	1	0	mRNA	capping	enzyme,	C-terminal	domain
Com_YlbF	PF06133.11	gi|384434041|ref|YP_005643399.1|	-	0.016	15.8	2.7	0.017	15.7	1.4	1.6	1	1	0	1	1	1	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
RPT	PF13446.6	gi|384434041|ref|YP_005643399.1|	-	0.033	14.1	1.2	0.12	12.4	1.2	2.1	1	1	0	1	1	1	0	A	repeated	domain	in	UCH-protein
RHH_1	PF01402.21	gi|384434043|ref|YP_005643401.1|	-	1.9e-06	27.6	0.1	2.6e-06	27.1	0.1	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|384434043|ref|YP_005643401.1|	-	0.007	16.3	0.3	0.0094	15.9	0.3	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
ZapB	PF06005.12	gi|384434045|ref|YP_005643403.1|	-	1.9e-11	44.2	11.8	2.6e-11	43.8	11.8	1.1	1	0	0	1	1	1	1	Cell	division	protein	ZapB
DUF615	PF04751.14	gi|384434045|ref|YP_005643403.1|	-	0.001	19.0	3.4	0.0011	18.9	3.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF615)
YabA	PF06156.13	gi|384434045|ref|YP_005643403.1|	-	0.0052	17.4	7.9	0.018	15.7	7.9	1.7	1	1	0	1	1	1	1	Initiation	control	protein	YabA
HAP1_N	PF04849.13	gi|384434045|ref|YP_005643403.1|	-	0.006	15.8	6.8	0.011	15.0	6.8	1.4	1	1	0	1	1	1	1	HAP1	N-terminal	conserved	region
bZIP_1	PF00170.21	gi|384434045|ref|YP_005643403.1|	-	0.0096	16.0	5.2	0.0099	16.0	4.2	1.6	1	1	0	1	1	1	1	bZIP	transcription	factor
GIT_CC	PF16559.5	gi|384434045|ref|YP_005643403.1|	-	0.01	15.7	0.3	0.01	15.7	0.3	2.5	2	1	0	2	2	2	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
CASP_C	PF08172.12	gi|384434045|ref|YP_005643403.1|	-	0.012	15.0	2.2	0.012	15.0	2.2	1.2	1	1	0	1	1	1	0	CASP	C	terminal
CENP-H	PF05837.12	gi|384434045|ref|YP_005643403.1|	-	0.013	15.9	6.1	0.02	15.3	6.1	1.4	1	1	0	1	1	1	0	Centromere	protein	H	(CENP-H)
Mod_r	PF07200.13	gi|384434045|ref|YP_005643403.1|	-	0.014	15.5	5.5	0.017	15.3	5.5	1.1	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
CtIP_N	PF10482.9	gi|384434045|ref|YP_005643403.1|	-	0.018	15.1	2.8	0.018	15.1	2.8	1.7	1	1	0	1	1	1	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
TMF_TATA_bd	PF12325.8	gi|384434045|ref|YP_005643403.1|	-	0.047	13.9	4.8	0.068	13.4	4.4	1.5	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
DUF4107	PF13389.6	gi|384434045|ref|YP_005643403.1|	-	0.19	11.9	0.7	0.21	11.7	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4107)
DivIC	PF04977.15	gi|384434045|ref|YP_005643403.1|	-	0.98	9.2	10.7	0.3	10.9	5.0	2.3	1	1	1	2	2	2	0	Septum	formation	initiator
FapA	PF03961.13	gi|384434045|ref|YP_005643403.1|	-	1.2	7.7	8.4	1.2	7.6	8.4	1.0	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
SlyX	PF04102.12	gi|384434045|ref|YP_005643403.1|	-	1.8	9.3	7.8	2.7	8.7	2.0	2.2	1	1	1	2	2	2	0	SlyX
TSC22	PF01166.18	gi|384434045|ref|YP_005643403.1|	-	1.9	8.9	9.6	0.42	11.0	3.9	2.7	2	1	1	3	3	3	0	TSC-22/dip/bun	family
bZIP_2	PF07716.15	gi|384434045|ref|YP_005643403.1|	-	5.2	7.2	11.4	0.17	11.9	2.7	2.6	1	1	2	3	3	3	0	Basic	region	leucine	zipper
MutS_I	PF01624.20	gi|384434046|ref|YP_005643404.1|	-	0.1	12.8	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	I
OrfB_Zn_ribbon	PF07282.11	gi|384434047|ref|YP_005643405.1|	-	6.6e-23	80.4	2.5	7.4e-23	80.3	0.6	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434047|ref|YP_005643405.1|	-	6.1e-05	23.2	0.5	0.00015	22.0	0.5	1.6	1	0	0	1	1	1	1	Probable	transposase
DUF643	PF04867.12	gi|384434047|ref|YP_005643405.1|	-	0.022	15.3	1.3	0.06	14.0	1.3	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF643)
DUF4798	PF16055.5	gi|384434047|ref|YP_005643405.1|	-	0.023	14.9	0.4	0.051	13.8	0.4	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4798)
DUF3466	PF11949.8	gi|384434047|ref|YP_005643405.1|	-	0.11	11.0	0.0	0.15	10.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3466)
Phage_integrase	PF00589.22	gi|384434048|ref|YP_005643406.1|	-	1.5e-09	37.9	0.0	7.7e-09	35.6	0.0	2.1	2	1	0	2	2	2	1	Phage	integrase	family
Phage_integr_3	PF16795.5	gi|384434048|ref|YP_005643406.1|	-	7.5e-06	25.9	1.2	0.00071	19.5	1.2	2.7	1	1	0	1	1	1	1	Archaeal	phage	integrase
UTP15_C	PF09384.10	gi|384434048|ref|YP_005643406.1|	-	0.051	13.3	0.3	0.14	11.8	0.2	1.7	2	0	0	2	2	2	0	UTP15	C	terminal
2TM	PF13239.6	gi|384434049|ref|YP_005643407.1|	-	0.23	11.8	3.8	0.25	11.7	3.8	1.2	1	0	0	1	1	1	0	2TM	domain
DUF2628	PF10947.8	gi|384434052|ref|YP_005643410.1|	-	0.69	10.3	3.8	0.8	10.1	3.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
DUF3671	PF12420.8	gi|384434052|ref|YP_005643410.1|	-	2.4	8.2	13.5	3.3	7.8	13.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function
Sulfolobus_pRN	PF05584.11	gi|384434053|ref|YP_005643411.1|	-	0.00055	19.9	0.1	0.00055	19.9	0.1	1.0	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
MFS_1	PF07690.16	gi|384434054|ref|YP_005643412.1|	-	5.5e-26	91.3	37.7	5.5e-26	91.3	37.7	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TM2	PF05154.16	gi|384434054|ref|YP_005643412.1|	-	0.039	14.3	1.0	0.039	14.3	1.0	5.4	6	0	0	6	6	6	0	TM2	domain
MFS_1_like	PF12832.7	gi|384434054|ref|YP_005643412.1|	-	0.11	11.3	37.5	1.8	7.4	37.5	2.0	1	1	0	1	1	1	0	MFS_1	like	family
Radical_SAM	PF04055.21	gi|384434055|ref|YP_005643413.1|	-	3.4e-12	47.1	0.1	6.6e-12	46.1	0.1	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
SPASM	PF13186.6	gi|384434055|ref|YP_005643413.1|	-	6.5e-08	33.0	0.0	2.1e-07	31.4	0.0	1.8	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_12	PF13353.6	gi|384434055|ref|YP_005643413.1|	-	2.4e-06	27.9	0.1	1.4e-05	25.4	0.0	2.1	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384434055|ref|YP_005643413.1|	-	1.3e-05	25.4	0.4	7.6e-05	22.8	0.2	2.2	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
QueC	PF06508.13	gi|384434058|ref|YP_005643416.1|	-	3.2e-23	82.4	0.0	1.7e-14	53.9	0.0	2.1	2	0	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|384434058|ref|YP_005643416.1|	-	0.001	18.9	0.0	0.0041	16.9	0.0	2.0	1	1	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.16	gi|384434058|ref|YP_005643416.1|	-	0.0019	17.0	0.0	0.0059	15.4	0.0	1.7	2	0	0	2	2	2	1	tRNA	methyl	transferase
ThiI	PF02568.14	gi|384434058|ref|YP_005643416.1|	-	0.026	14.1	0.0	0.097	12.2	0.0	1.9	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Asn_synthase	PF00733.21	gi|384434058|ref|YP_005643416.1|	-	0.07	12.8	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	Asparagine	synthase
NAD_synthase	PF02540.17	gi|384434058|ref|YP_005643416.1|	-	0.1	11.7	0.0	0.81	8.8	0.0	2.1	2	1	0	2	2	2	0	NAD	synthase
DUF3783	PF12646.7	gi|384434060|ref|YP_005643418.1|	-	0.041	13.8	0.1	0.055	13.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3783)
DDE_Tnp_IS1	PF03400.13	gi|384434061|ref|YP_005643419.1|	-	2.4e-11	44.1	0.3	4.8e-11	43.1	0.3	1.4	1	0	0	1	1	1	1	IS1	transposase
Zn_Tnp_IS1	PF03811.13	gi|384434061|ref|YP_005643419.1|	-	0.0016	18.2	5.0	0.0029	17.3	5.0	1.5	1	0	0	1	1	1	1	InsA	N-terminal	domain
zf-Mss51	PF13824.6	gi|384434061|ref|YP_005643419.1|	-	0.013	15.5	0.2	0.051	13.7	0.2	1.9	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HTH_23	PF13384.6	gi|384434061|ref|YP_005643419.1|	-	0.028	14.2	1.6	0.35	10.7	0.4	2.6	2	0	0	2	2	2	0	Homeodomain-like	domain
zinc_ribbon_4	PF13717.6	gi|384434061|ref|YP_005643419.1|	-	0.032	14.1	3.2	0.069	13.1	3.2	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Sigma70_r4_2	PF08281.12	gi|384434061|ref|YP_005643419.1|	-	0.034	13.8	0.4	0.11	12.2	0.4	1.9	1	0	0	1	1	1	0	Sigma-70,	region	4
Zn-ribbon_8	PF09723.10	gi|384434061|ref|YP_005643419.1|	-	0.047	13.8	3.2	3.6	7.8	0.3	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384434061|ref|YP_005643419.1|	-	0.051	13.5	4.3	0.11	12.4	4.3	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF2310	PF10071.9	gi|384434061|ref|YP_005643419.1|	-	0.055	12.7	0.1	0.09	12.0	0.1	1.3	1	0	0	1	1	1	0	Zn-ribbon-containing,	possibly	nucleic-acid-binding	protein	(DUF2310)
Fanconi_A_N	PF15865.5	gi|384434061|ref|YP_005643419.1|	-	0.11	11.8	0.2	0.19	11.1	0.2	1.2	1	0	0	1	1	1	0	Fanconi	anaemia	group	A	protein	N	terminus
HTH_38	PF13936.6	gi|384434061|ref|YP_005643419.1|	-	0.15	11.9	1.7	0.45	10.3	1.7	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_psq	PF05225.16	gi|384434061|ref|YP_005643419.1|	-	0.22	11.3	0.9	1.4	8.7	0.9	2.3	1	1	0	1	1	1	0	helix-turn-helix,	Psq	domain
TF_Zn_Ribbon	PF08271.12	gi|384434061|ref|YP_005643419.1|	-	1.9	8.1	4.3	15	5.2	0.4	2.3	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-H2C2_2	PF13465.6	gi|384434061|ref|YP_005643419.1|	-	4	8.0	8.6	0.94	10.0	0.9	3.2	3	0	0	3	3	3	0	Zinc-finger	double	domain
RDD	PF06271.12	gi|384434066|ref|YP_005643424.1|	-	0.027	14.7	0.7	0.049	13.8	0.6	1.4	1	1	0	1	1	1	0	RDD	family
HKR_ArcB_TM	PF18415.1	gi|384434066|ref|YP_005643424.1|	-	0.13	13.0	4.8	0.25	12.2	4.8	1.4	1	0	0	1	1	1	0	Histidine	kinase	receptor	ArcB	trans-membrane	domain
AdoMet_dc	PF02675.15	gi|384434068|ref|YP_005643426.1|	-	4.1e-33	113.8	0.0	4.7e-33	113.6	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
YbaB_DNA_bd	PF02575.16	gi|384434068|ref|YP_005643426.1|	-	0.13	12.5	0.0	0.2	11.9	0.0	1.3	1	0	0	1	1	1	0	YbaB/EbfC	DNA-binding	family
ACP_syn_III_C	PF08541.10	gi|384434069|ref|YP_005643427.1|	-	6.5e-12	45.5	0.0	6.5e-11	42.3	0.0	2.4	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
ACP_syn_III	PF08545.10	gi|384434069|ref|YP_005643427.1|	-	3.1e-05	23.8	0.6	8.2e-05	22.4	0.6	1.7	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
HMG_CoA_synt_C	PF08540.10	gi|384434069|ref|YP_005643427.1|	-	8.5e-05	22.3	0.2	0.018	14.7	0.1	2.2	1	1	1	2	2	2	2	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
Thiolase_C	PF02803.18	gi|384434069|ref|YP_005643427.1|	-	0.033	13.9	0.0	0.074	12.7	0.0	1.6	1	0	0	1	1	1	0	Thiolase,	C-terminal	domain
Chal_sti_synt_N	PF00195.19	gi|384434069|ref|YP_005643427.1|	-	0.075	12.4	0.0	0.61	9.5	0.0	2.0	2	0	0	2	2	2	0	Chalcone	and	stilbene	synthases,	N-terminal	domain
Thiolase_N	PF00108.23	gi|384434070|ref|YP_005643428.1|	-	5.6e-12	45.6	0.0	1e-11	44.7	0.0	1.4	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|384434070|ref|YP_005643428.1|	-	0.0012	18.7	0.1	0.019	14.8	0.0	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF2619	PF10942.8	gi|384434070|ref|YP_005643428.1|	-	0.29	11.3	1.5	0.51	10.4	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2619)
OB_aCoA_assoc	PF01796.17	gi|384434071|ref|YP_005643429.1|	-	2.6e-16	59.4	0.0	3.3e-16	59.0	0.0	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|384434071|ref|YP_005643429.1|	-	4.2e-07	29.7	1.0	6.9e-07	29.0	1.0	1.2	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TackOD1	PF18551.1	gi|384434071|ref|YP_005643429.1|	-	0.0026	17.5	0.6	0.0035	17.0	0.6	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
TLP1_add_C	PF18313.1	gi|384434071|ref|YP_005643429.1|	-	0.0037	17.2	0.0	0.0049	16.8	0.0	1.3	1	0	0	1	1	1	1	Thiolase-like	protein	type	1	additional	C-terminal	domain
zinc_ribbon_2	PF13240.6	gi|384434071|ref|YP_005643429.1|	-	0.0053	16.4	2.4	0.31	10.8	0.4	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|384434071|ref|YP_005643429.1|	-	0.0065	16.6	1.3	0.014	15.5	1.3	1.6	1	1	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
Nudix_N_2	PF14803.6	gi|384434071|ref|YP_005643429.1|	-	0.009	15.9	1.3	1	9.4	0.1	2.4	2	0	0	2	2	2	1	Nudix	N-terminal
DZR	PF12773.7	gi|384434071|ref|YP_005643429.1|	-	0.011	15.7	0.5	0.016	15.2	0.5	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
Ribosomal_L37e	PF01907.19	gi|384434071|ref|YP_005643429.1|	-	0.013	15.6	3.2	0.023	14.9	3.2	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-NADH-PPase	PF09297.11	gi|384434071|ref|YP_005643429.1|	-	0.026	14.2	0.7	7.3	6.4	0.0	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.19	gi|384434071|ref|YP_005643429.1|	-	0.096	12.7	0.3	0.15	12.1	0.3	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Auto_anti-p27	PF06677.12	gi|384434071|ref|YP_005643429.1|	-	0.12	12.5	0.5	0.23	11.7	0.5	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn-ribbon_8	PF09723.10	gi|384434071|ref|YP_005643429.1|	-	0.29	11.3	3.8	1.1	9.5	3.8	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
zn-ribbon_14	PF16503.5	gi|384434071|ref|YP_005643429.1|	-	0.37	10.3	6.1	0.44	10.1	0.4	2.3	2	0	0	2	2	2	0	Zinc-ribbon
HMG-CoA_red	PF00368.18	gi|384434072|ref|YP_005643430.1|	-	1.2e-131	439.1	0.8	1.3e-131	438.9	0.8	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
HAMP_N3	PF18575.1	gi|384434072|ref|YP_005643430.1|	-	0.088	12.4	0.6	11	5.7	0.0	3.3	3	0	0	3	3	3	0	HAMP	N-terminal	domain	3
SHMT	PF00464.19	gi|384434073|ref|YP_005643431.1|	-	2.4e-65	220.7	0.1	2.9e-65	220.4	0.1	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|384434073|ref|YP_005643431.1|	-	4.6e-10	39.2	0.0	1.5e-09	37.5	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|384434073|ref|YP_005643431.1|	-	1.2e-06	28.0	0.0	1.7e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|384434073|ref|YP_005643431.1|	-	7.4e-05	21.9	0.0	0.00023	20.3	0.0	1.7	2	0	0	2	2	2	1	Aminotransferase	class-V
SelA	PF03841.13	gi|384434073|ref|YP_005643431.1|	-	0.083	11.9	0.0	0.17	10.8	0.0	1.6	1	1	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
Adenine_glyco	PF03352.13	gi|384434073|ref|YP_005643431.1|	-	0.22	11.2	1.5	1.9	8.2	0.0	3.0	4	0	0	4	4	4	0	Methyladenine	glycosylase
DUF919	PF06034.11	gi|384434073|ref|YP_005643431.1|	-	4.9	7.1	7.9	2.2	8.2	0.9	3.0	3	0	0	3	3	3	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
Usp	PF00582.26	gi|384434074|ref|YP_005643432.1|	-	2.3e-20	73.5	0.0	6.3e-19	68.9	0.0	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
Gp_dh_C	PF02800.20	gi|384434075|ref|YP_005643433.1|	-	3.2e-19	69.1	4.4	5.1e-19	68.4	4.4	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|384434075|ref|YP_005643433.1|	-	4.2e-11	43.0	0.1	1.3e-10	41.4	0.1	1.9	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|384434075|ref|YP_005643433.1|	-	7.8e-06	26.2	2.7	2.1e-05	24.8	0.1	2.8	3	1	0	3	3	3	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|384434075|ref|YP_005643433.1|	-	0.011	15.1	0.7	1.1	8.6	0.1	2.6	2	1	1	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|384434075|ref|YP_005643433.1|	-	0.016	15.8	0.0	0.079	13.6	0.0	2.2	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|384434075|ref|YP_005643433.1|	-	0.023	15.5	0.6	0.07	14.0	0.0	2.1	2	1	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Sacchrp_dh_NADP	PF03435.18	gi|384434075|ref|YP_005643433.1|	-	0.2	11.9	2.5	0.43	10.8	0.0	2.7	3	1	0	3	3	3	0	Saccharopine	dehydrogenase	NADP	binding	domain
PGK	PF00162.19	gi|384434076|ref|YP_005643434.1|	-	1.5e-102	343.4	0.1	1.7e-102	343.2	0.1	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Fe-ADH	PF00465.19	gi|384434076|ref|YP_005643434.1|	-	0.093	11.5	0.0	0.16	10.7	0.0	1.3	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
SAM_DrpA	PF18255.1	gi|384434077|ref|YP_005643435.1|	-	0.12	12.7	1.5	0.43	10.9	0.2	2.4	2	0	0	2	2	2	0	DNA	processing	protein	A	sterile	alpha	motif	domain
MS_channel	PF00924.18	gi|384434078|ref|YP_005643436.1|	-	2.4e-18	66.5	0.4	2.4e-18	66.5	0.4	2.2	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Ribo_biogen_C	PF04034.13	gi|384434079|ref|YP_005643437.1|	-	3e-40	136.9	0.0	3.6e-40	136.6	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|384434079|ref|YP_005643437.1|	-	5.5e-12	45.3	0.4	9e-12	44.6	0.4	1.4	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
DNA_pol_B	PF00136.21	gi|384434080|ref|YP_005643438.1|	-	5.3e-55	186.9	2.3	9.7e-55	186.1	2.3	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|384434080|ref|YP_005643438.1|	-	1e-27	97.2	1.2	1e-27	97.2	1.2	1.9	2	0	0	2	2	2	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_exo2	PF10108.9	gi|384434080|ref|YP_005643438.1|	-	3.4e-05	23.6	0.0	0.00011	21.9	0.0	1.9	2	0	0	2	2	2	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_H_2	PF13482.6	gi|384434080|ref|YP_005643438.1|	-	0.0001	22.3	0.8	0.00072	19.6	0.1	2.8	2	1	0	2	2	2	1	RNase_H	superfamily
ACT_6	PF13740.6	gi|384434080|ref|YP_005643438.1|	-	0.012	15.6	0.1	0.045	13.7	0.0	2.0	2	0	0	2	2	2	0	ACT	domain
DUF2286	PF10051.9	gi|384434081|ref|YP_005643439.1|	-	4.7e-53	178.6	10.2	5.7e-53	178.4	10.2	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2286)
Thr_synth_N	PF14821.6	gi|384434081|ref|YP_005643439.1|	-	0.014	15.6	0.4	0.039	14.2	0.2	1.8	2	0	0	2	2	2	0	Threonine	synthase	N	terminus
Methyltransf_31	PF13847.6	gi|384434082|ref|YP_005643440.1|	-	2.6e-10	40.3	0.0	3.9e-10	39.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|384434082|ref|YP_005643440.1|	-	4.7e-08	32.8	0.3	6e-08	32.4	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.6	gi|384434082|ref|YP_005643440.1|	-	7.6e-08	33.0	0.0	1.3e-07	32.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|384434082|ref|YP_005643440.1|	-	1.3e-07	31.7	0.1	1.6e-07	31.4	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.13	gi|384434082|ref|YP_005643440.1|	-	3.3e-07	30.0	0.1	5.1e-06	26.2	0.1	2.0	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
CMAS	PF02353.20	gi|384434082|ref|YP_005643440.1|	-	2.2e-06	27.1	0.0	2.6e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.17	gi|384434082|ref|YP_005643440.1|	-	4.8e-06	26.1	0.1	6.8e-06	25.7	0.1	1.3	1	1	0	1	1	1	1	Putative	methyltransferase
TrmK	PF04816.12	gi|384434082|ref|YP_005643440.1|	-	0.00024	20.7	0.2	0.0009	18.8	0.1	1.7	1	1	1	2	2	2	1	tRNA	(adenine(22)-N(1))-methyltransferase
MTS	PF05175.14	gi|384434082|ref|YP_005643440.1|	-	0.00024	20.7	0.1	0.00031	20.3	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
N6_Mtase	PF02384.16	gi|384434082|ref|YP_005643440.1|	-	0.0004	19.7	0.0	0.00046	19.5	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
tRNA_U5-meth_tr	PF05958.11	gi|384434082|ref|YP_005643440.1|	-	0.00055	19.0	0.0	0.00063	18.8	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_11	PF08241.12	gi|384434082|ref|YP_005643440.1|	-	0.00068	20.2	0.0	0.0011	19.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|384434082|ref|YP_005643440.1|	-	0.0041	16.8	0.0	0.0049	16.5	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
N6_N4_Mtase	PF01555.18	gi|384434082|ref|YP_005643440.1|	-	0.0041	16.8	0.0	0.0066	16.2	0.0	1.2	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_15	PF09445.10	gi|384434082|ref|YP_005643440.1|	-	0.0064	16.1	0.0	0.0067	16.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_12	PF08242.12	gi|384434082|ref|YP_005643440.1|	-	0.012	16.4	0.1	0.032	15.0	0.1	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
TehB	PF03848.14	gi|384434082|ref|YP_005643440.1|	-	0.014	14.8	0.0	0.02	14.3	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Methyltransf_8	PF05148.15	gi|384434082|ref|YP_005643440.1|	-	0.017	15.0	0.0	0.026	14.4	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
Methyltransf_2	PF00891.18	gi|384434082|ref|YP_005643440.1|	-	0.026	13.8	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384434082|ref|YP_005643440.1|	-	0.028	14.2	0.0	0.041	13.7	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.18	gi|384434082|ref|YP_005643440.1|	-	0.081	12.6	0.1	1.2	8.8	0.1	2.1	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_20	PF12147.8	gi|384434082|ref|YP_005643440.1|	-	0.099	11.8	0.1	0.12	11.4	0.1	1.1	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_32	PF13679.6	gi|384434082|ref|YP_005643440.1|	-	0.13	12.2	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Birna_VP3	PF01767.16	gi|384434082|ref|YP_005643440.1|	-	0.15	12.2	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	Birnavirus	VP3	protein
CDP-OH_P_transf	PF01066.21	gi|384434084|ref|YP_005643442.1|	-	3.5e-13	50.1	1.3	3.5e-13	50.1	1.3	2.6	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
DUF1129	PF06570.11	gi|384434084|ref|YP_005643442.1|	-	0.067	12.7	0.3	0.067	12.7	0.3	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
DNA_primase_lrg	PF04104.14	gi|384434085|ref|YP_005643443.1|	-	1.8e-16	60.4	3.2	5.9e-09	35.7	0.2	3.2	1	1	2	3	3	3	2	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
DUF1134	PF06577.12	gi|384434085|ref|YP_005643443.1|	-	0.12	12.1	0.1	0.22	11.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1134)
tRNA-synt_1g	PF09334.11	gi|384434086|ref|YP_005643444.1|	-	3.5e-156	519.9	0.0	4.4e-156	519.6	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.22	gi|384434086|ref|YP_005643444.1|	-	1.4e-10	40.1	0.3	7e-06	24.6	0.0	3.0	2	1	1	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|384434086|ref|YP_005643444.1|	-	3e-07	30.5	0.1	5.5e-07	29.7	0.1	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
TerY_C	PF15616.6	gi|384434086|ref|YP_005643444.1|	-	0.13	12.4	0.3	0.24	11.5	0.3	1.4	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zf-C2HC5	PF06221.13	gi|384434086|ref|YP_005643444.1|	-	0.46	10.5	3.5	0.35	10.9	0.5	2.0	2	0	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
TetM_leader	PF08076.11	gi|384434086|ref|YP_005643444.1|	-	0.52	10.1	1.9	0.45	10.3	0.1	1.9	2	0	0	2	2	2	0	Tetracycline	resistance	determinant	leader	peptide
DZR	PF12773.7	gi|384434086|ref|YP_005643444.1|	-	0.54	10.3	4.1	1.2	9.2	4.1	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|384434086|ref|YP_005643444.1|	-	0.83	9.2	11.4	8.8	5.9	3.3	3.3	2	1	1	3	3	3	0	zinc-ribbon	domain
V_ATPase_I	PF01496.19	gi|384434087|ref|YP_005643445.1|	-	1.6e-34	119.0	16.5	4.9e-25	87.6	1.2	4.0	3	1	0	3	3	3	3	V-type	ATPase	116kDa	subunit	family
Ubiquitin_5	PF18037.1	gi|384434087|ref|YP_005643445.1|	-	0.024	15.0	0.6	2.4	8.5	0.0	2.5	2	0	0	2	2	2	0	Ubiquitin-like	domain
KASH_CCD	PF14662.6	gi|384434087|ref|YP_005643445.1|	-	0.085	12.7	8.3	0.67	9.7	0.9	2.3	2	0	0	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
Sec34	PF04136.15	gi|384434087|ref|YP_005643445.1|	-	0.13	12.2	3.6	0.16	11.9	0.8	2.1	2	0	0	2	2	2	0	Sec34-like	family
ATP-synt_F	PF01990.17	gi|384434088|ref|YP_005643446.1|	-	1.4e-13	51.0	0.1	1.6e-13	50.8	0.1	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
vATP-synt_E	PF01991.18	gi|384434089|ref|YP_005643447.1|	-	7.3e-09	35.3	4.1	7.3e-09	35.3	4.1	2.7	1	1	1	2	2	2	2	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G_2	PF16999.5	gi|384434089|ref|YP_005643447.1|	-	0.0063	16.9	0.5	0.0063	16.9	0.5	1.9	2	0	0	2	2	2	1	Vacuolar	(H+)-ATPase	G	subunit
FliH	PF02108.16	gi|384434089|ref|YP_005643447.1|	-	0.0064	16.6	2.8	0.051	13.6	0.1	2.4	1	1	0	2	2	2	1	Flagellar	assembly	protein	FliH
Phage_sheath_1	PF04984.14	gi|384434089|ref|YP_005643447.1|	-	0.015	15.1	0.1	1.8	8.4	0.1	2.8	1	1	1	3	3	3	0	Phage	tail	sheath	protein	subtilisin-like	domain
DUF3298	PF11738.8	gi|384434089|ref|YP_005643447.1|	-	0.5	11.4	2.6	3.5	8.7	0.1	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3298)
YtxH	PF12732.7	gi|384434089|ref|YP_005643447.1|	-	0.6	10.7	5.1	9.1	6.9	5.1	2.3	1	1	0	1	1	1	0	YtxH-like	protein
ATP-synt_ab	PF00006.25	gi|384434090|ref|YP_005643448.1|	-	8.2e-85	283.8	0.0	1.1e-84	283.4	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|384434090|ref|YP_005643448.1|	-	5.9e-46	155.3	0.1	1e-45	154.5	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|384434090|ref|YP_005643448.1|	-	6.5e-15	55.4	0.3	1.6e-14	54.1	0.3	1.7	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.6	gi|384434090|ref|YP_005643448.1|	-	0.013	15.7	0.2	0.04	14.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.25	gi|384434091|ref|YP_005643449.1|	-	1.9e-65	220.5	0.0	2.5e-65	220.1	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|384434091|ref|YP_005643449.1|	-	2.3e-12	47.3	1.5	7.4e-12	45.6	1.0	2.1	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|384434091|ref|YP_005643449.1|	-	0.028	14.6	0.0	0.11	12.7	0.2	2.0	2	0	0	2	2	2	0	HAS	barrel	domain
ATP-synt_D	PF01813.17	gi|384434092|ref|YP_005643450.1|	-	3.1e-43	147.9	9.3	3.5e-43	147.7	9.3	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
GPAT_N	PF14829.6	gi|384434092|ref|YP_005643450.1|	-	0.002	18.1	1.7	0.002	18.1	1.7	1.9	2	1	0	2	2	2	1	Glycerol-3-phosphate	acyltransferase	N-terminal
DUF3829	PF12889.7	gi|384434092|ref|YP_005643450.1|	-	0.0073	15.8	3.6	0.014	14.9	3.6	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3829)
DUF4763	PF15960.5	gi|384434092|ref|YP_005643450.1|	-	0.0076	15.6	0.4	0.024	14.0	0.0	1.9	2	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4763)
NHR2	PF08788.11	gi|384434092|ref|YP_005643450.1|	-	0.011	15.5	0.0	2	8.2	0.0	2.4	2	0	0	2	2	2	0	NHR2	domain	like
DNTTIP1_dimer	PF18192.1	gi|384434092|ref|YP_005643450.1|	-	0.023	15.0	2.2	0.071	13.5	0.3	2.5	2	1	0	2	2	2	0	DNTTIP1	dimerisation	domain
EDR1	PF14381.6	gi|384434092|ref|YP_005643450.1|	-	0.04	13.6	0.0	0.078	12.7	0.0	1.5	1	1	0	1	1	1	0	Ethylene-responsive	protein	kinase	Le-CTR1
Anoctamin	PF04547.12	gi|384434092|ref|YP_005643450.1|	-	0.14	10.9	1.7	0.15	10.9	1.2	1.4	1	1	0	1	1	1	0	Calcium-activated	chloride	channel
KIP1	PF07765.12	gi|384434092|ref|YP_005643450.1|	-	0.18	12.0	2.5	0.32	11.1	0.1	2.5	2	1	2	4	4	4	0	KIP1-like	protein
ATP-synt_E_2	PF08112.11	gi|384434093|ref|YP_005643451.1|	-	3.6e-27	94.4	14.1	3.9e-27	94.3	14.1	1.0	1	0	0	1	1	1	1	ATP	synthase	epsilon	subunit
NBD94	PF16830.5	gi|384434093|ref|YP_005643451.1|	-	0.0066	16.8	2.8	0.008	16.5	2.8	1.3	1	0	0	1	1	1	1	Nucleotide-Binding	Domain	94	of	RH
rpo30_N	PF12410.8	gi|384434093|ref|YP_005643451.1|	-	0.017	15.0	0.4	0.019	14.8	0.4	1.2	1	0	0	1	1	1	0	Poxvirus	DNA	dependent	RNA	polymerase	30kDa	subunit
RsbU_N	PF08673.10	gi|384434093|ref|YP_005643451.1|	-	0.15	12.2	2.3	0.21	11.7	2.3	1.3	1	1	0	1	1	1	0	Phosphoserine	phosphatase	RsbU,	N-terminal	domain
Orthopox_B11R	PF07033.11	gi|384434093|ref|YP_005643451.1|	-	0.32	10.8	3.2	0.3	10.9	2.3	1.5	1	1	1	2	2	2	0	Orthopoxvirus	B11R	protein
ATP-synt_C	PF00137.21	gi|384434094|ref|YP_005643452.1|	-	3.6e-14	52.8	19.8	3.6e-14	52.8	19.8	1.9	2	0	0	2	2	2	1	ATP	synthase	subunit	C
YjbE	PF11106.8	gi|384434094|ref|YP_005643452.1|	-	0.22	11.8	12.9	0.36	11.1	12.9	1.3	1	0	0	1	1	1	0	Exopolysaccharide	production	protein	YjbE
Nitrate_red_gam	PF02665.14	gi|384434094|ref|YP_005643452.1|	-	1.1	8.7	6.3	2.2	7.7	6.3	1.6	1	1	0	1	1	1	0	Nitrate	reductase	gamma	subunit
DUF4231	PF14015.6	gi|384434094|ref|YP_005643452.1|	-	1.5	9.3	4.6	1.2	9.7	3.2	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
tRNA-synt_2b	PF00587.25	gi|384434095|ref|YP_005643453.1|	-	1.3e-25	90.4	0.0	2.1e-25	89.7	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|384434095|ref|YP_005643453.1|	-	1.5e-17	63.5	0.1	3e-17	62.5	0.1	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.11	gi|384434095|ref|YP_005643453.1|	-	1.5e-14	53.9	0.4	3.9e-14	52.6	0.4	1.8	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
tRNA-synt_2	PF00152.20	gi|384434095|ref|YP_005643453.1|	-	0.0018	17.4	0.3	0.0052	15.9	0.1	1.9	2	0	0	2	2	2	1	tRNA	synthetases	class	II	(D,	K	and	N)
CitX	PF03802.14	gi|384434095|ref|YP_005643453.1|	-	0.31	10.8	3.0	0.42	10.4	0.0	2.5	3	0	0	3	3	3	0	Apo-citrate	lyase	phosphoribosyl-dephospho-CoA	transferase
Ribosomal_S26e	PF01283.19	gi|384434096|ref|YP_005643454.1|	-	1.3e-22	80.3	3.7	1.5e-22	80.1	3.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
Lar_restr_allev	PF14354.6	gi|384434096|ref|YP_005643454.1|	-	0.018	15.4	2.4	0.23	11.8	0.2	2.1	1	1	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf_UBZ	PF18439.1	gi|384434096|ref|YP_005643454.1|	-	0.072	12.7	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|384434096|ref|YP_005643454.1|	-	0.12	11.8	0.8	0.12	11.8	0.8	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|384434096|ref|YP_005643454.1|	-	1.1	9.4	5.6	3.4	7.9	0.5	2.3	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
SOR_SNZ	PF01680.17	gi|384434097|ref|YP_005643455.1|	-	9.1e-100	332.6	3.7	1.2e-99	332.3	3.7	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|384434097|ref|YP_005643455.1|	-	1.1e-05	24.8	2.3	5.2e-05	22.7	0.1	2.4	3	0	0	3	3	3	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.21	gi|384434097|ref|YP_005643455.1|	-	0.00013	21.2	0.0	0.12	11.5	0.0	2.3	2	0	0	2	2	2	2	Indole-3-glycerol	phosphate	synthase
Dus	PF01207.17	gi|384434097|ref|YP_005643455.1|	-	0.0011	18.1	1.0	0.23	10.5	0.0	2.9	2	2	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
OMPdecase	PF00215.24	gi|384434097|ref|YP_005643455.1|	-	0.0025	17.4	0.8	1.1	8.8	0.1	2.7	2	1	1	3	3	3	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
NMO	PF03060.15	gi|384434097|ref|YP_005643455.1|	-	0.02	14.3	2.8	0.053	12.9	0.1	2.1	2	0	0	2	2	2	0	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|384434097|ref|YP_005643455.1|	-	0.031	13.7	0.6	1.5	8.2	0.1	2.9	2	2	0	2	2	2	0	Histidine	biosynthesis	protein
TetR_C_27	PF17935.1	gi|384434097|ref|YP_005643455.1|	-	0.037	14.1	0.0	0.1	12.7	0.0	1.7	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
SNO	PF01174.19	gi|384434098|ref|YP_005643456.1|	-	7e-49	166.2	0.0	8.5e-49	165.9	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|384434098|ref|YP_005643456.1|	-	1.3e-11	44.5	0.1	2.1e-11	43.8	0.1	1.5	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|384434098|ref|YP_005643456.1|	-	1e-08	35.1	0.0	1.3e-08	34.7	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.28	gi|384434098|ref|YP_005643456.1|	-	3e-07	30.4	0.0	5.2e-07	29.6	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|384434098|ref|YP_005643456.1|	-	0.0048	16.7	0.0	0.0064	16.3	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
T2SSE	PF00437.20	gi|384434099|ref|YP_005643457.1|	-	3.1e-09	36.3	0.0	5.1e-09	35.6	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|384434099|ref|YP_005643457.1|	-	0.00082	19.9	2.8	0.0015	19.1	0.0	2.9	4	0	0	4	4	3	1	AAA	domain
IstB_IS21	PF01695.17	gi|384434099|ref|YP_005643457.1|	-	0.0029	17.4	0.0	0.0059	16.3	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
RuvB_N	PF05496.12	gi|384434099|ref|YP_005643457.1|	-	0.01	15.6	0.3	0.093	12.5	0.0	2.4	3	0	0	3	3	2	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NTPase_1	PF03266.15	gi|384434099|ref|YP_005643457.1|	-	0.012	15.5	1.0	0.16	11.8	0.0	2.7	3	0	0	3	3	3	0	NTPase
DnaB_C	PF03796.15	gi|384434099|ref|YP_005643457.1|	-	0.013	14.9	0.0	0.025	13.9	0.0	1.4	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
AAA_16	PF13191.6	gi|384434099|ref|YP_005643457.1|	-	0.015	15.7	0.0	0.026	14.9	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_28	PF13521.6	gi|384434099|ref|YP_005643457.1|	-	0.016	15.5	0.0	0.028	14.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|384434099|ref|YP_005643457.1|	-	0.032	14.0	0.0	0.062	13.1	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_24	PF13479.6	gi|384434099|ref|YP_005643457.1|	-	0.033	13.9	0.1	0.31	10.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|384434099|ref|YP_005643457.1|	-	0.033	14.1	0.0	0.057	13.3	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_25	PF13481.6	gi|384434099|ref|YP_005643457.1|	-	0.034	13.7	0.0	0.057	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|384434099|ref|YP_005643457.1|	-	0.036	14.3	0.1	0.59	10.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|384434099|ref|YP_005643457.1|	-	0.062	13.3	0.0	0.46	10.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|384434099|ref|YP_005643457.1|	-	0.064	13.4	0.0	0.18	12.0	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
AAA	PF00004.29	gi|384434099|ref|YP_005643457.1|	-	0.064	13.7	0.0	0.2	12.1	0.0	1.9	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|384434099|ref|YP_005643457.1|	-	0.066	13.2	0.0	0.2	11.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MeaB	PF03308.16	gi|384434099|ref|YP_005643457.1|	-	0.082	11.9	0.0	0.14	11.1	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Zeta_toxin	PF06414.12	gi|384434099|ref|YP_005643457.1|	-	0.09	12.1	0.0	0.2	10.9	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
ResIII	PF04851.15	gi|384434099|ref|YP_005643457.1|	-	0.12	12.4	0.0	0.37	10.8	0.0	1.8	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
TsaE	PF02367.17	gi|384434099|ref|YP_005643457.1|	-	0.13	12.3	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SRP54	PF00448.22	gi|384434099|ref|YP_005643457.1|	-	0.18	11.4	0.4	0.75	9.4	0.1	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_19	PF13245.6	gi|384434099|ref|YP_005643457.1|	-	0.18	12.2	0.0	0.55	10.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Hjc	PF01870.18	gi|384434100|ref|YP_005643458.1|	-	3.4e-30	103.9	0.1	5.4e-30	103.2	0.1	1.3	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
AHJR-like	PF18743.1	gi|384434100|ref|YP_005643458.1|	-	0.0016	18.0	0.0	0.0033	17.0	0.0	1.5	1	1	0	1	1	1	1	REase_AHJR-like
TruB_C_2	PF16198.5	gi|384434100|ref|YP_005643458.1|	-	0.11	12.7	0.1	0.16	12.1	0.1	1.3	1	0	0	1	1	1	0	tRNA	pseudouridylate	synthase	B	C-terminal	domain
IlvN	PF07991.12	gi|384434101|ref|YP_005643459.1|	-	5.3e-72	240.8	0.0	8.4e-72	240.1	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|384434101|ref|YP_005643459.1|	-	4.3e-53	179.5	1.9	6.3e-53	178.9	1.9	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.17	gi|384434101|ref|YP_005643459.1|	-	1.4e-08	35.2	0.0	3.4e-08	34.0	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|384434101|ref|YP_005643459.1|	-	1.9e-06	28.1	0.0	7.7e-06	26.2	0.0	1.9	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|384434101|ref|YP_005643459.1|	-	6.7e-06	25.6	0.0	1.4e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|384434101|ref|YP_005643459.1|	-	0.0007	19.6	0.6	1.7	8.6	0.1	2.9	3	0	0	3	3	3	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
AdoHcyase_NAD	PF00670.21	gi|384434101|ref|YP_005643459.1|	-	0.00096	19.2	0.0	0.0033	17.5	0.0	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ApbA	PF02558.16	gi|384434101|ref|YP_005643459.1|	-	0.045	13.4	0.1	0.11	12.1	0.1	1.8	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.18	gi|384434101|ref|YP_005643459.1|	-	0.12	12.7	0.0	0.25	11.6	0.0	1.6	1	1	0	1	1	1	0	TrkA-N	domain
ACT_5	PF13710.6	gi|384434102|ref|YP_005643460.1|	-	0.00095	19.0	0.0	0.0016	18.2	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
HicB-like_2	PF15970.5	gi|384434102|ref|YP_005643460.1|	-	0.14	12.3	0.0	0.23	11.7	0.0	1.3	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
TPP_enzyme_N	PF02776.18	gi|384434103|ref|YP_005643461.1|	-	8.1e-57	191.6	0.0	6.2e-55	185.4	0.0	2.4	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|384434103|ref|YP_005643461.1|	-	3e-46	157.0	0.0	1.4e-45	154.8	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|384434103|ref|YP_005643461.1|	-	2e-38	131.2	0.0	4.1e-38	130.2	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.19	gi|384434103|ref|YP_005643461.1|	-	0.0022	17.8	0.0	0.0046	16.7	0.0	1.5	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Acid_PPase	PF12689.7	gi|384434104|ref|YP_005643462.1|	-	7.8e-11	42.1	0.1	2.4e-10	40.5	0.1	1.7	1	1	0	1	1	1	1	Acid	Phosphatase
HAD_2	PF13419.6	gi|384434104|ref|YP_005643462.1|	-	5.5e-10	39.6	0.2	1.2e-08	35.2	0.0	2.4	1	1	1	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384434104|ref|YP_005643462.1|	-	4.2e-07	30.5	0.0	0.00049	20.5	0.0	2.1	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|384434104|ref|YP_005643462.1|	-	0.19	12.1	0.1	14	6.0	0.1	2.1	1	1	1	2	2	2	0	haloacid	dehalogenase-like	hydrolase
MMR_HSR1	PF01926.23	gi|384434105|ref|YP_005643463.1|	-	3e-15	56.3	0.2	6.7e-12	45.5	0.0	2.2	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|384434105|ref|YP_005643463.1|	-	6.6e-09	35.9	0.0	1.2e-08	35.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
FeoB_N	PF02421.18	gi|384434105|ref|YP_005643463.1|	-	0.00018	21.1	0.6	0.032	13.8	0.0	2.5	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|384434105|ref|YP_005643463.1|	-	0.00048	20.2	1.5	0.0033	17.5	0.1	2.4	2	1	0	2	2	2	1	Dynamin	family
AAA_16	PF13191.6	gi|384434105|ref|YP_005643463.1|	-	0.0022	18.4	0.0	0.0037	17.7	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AIG1	PF04548.16	gi|384434105|ref|YP_005643463.1|	-	0.0079	15.5	0.0	0.5	9.6	0.0	2.1	2	0	0	2	2	2	1	AIG1	family
MMR_HSR1_Xtn	PF16897.5	gi|384434105|ref|YP_005643463.1|	-	0.031	14.3	0.3	0.083	12.9	0.1	1.8	2	0	0	2	2	2	0	C-terminal	region	of	MMR_HSR1	domain
Roc	PF08477.13	gi|384434105|ref|YP_005643463.1|	-	0.058	13.6	0.0	0.22	11.8	0.0	1.9	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
GTP_EFTU	PF00009.27	gi|384434105|ref|YP_005643463.1|	-	0.12	11.9	0.1	0.34	10.4	0.1	1.5	1	1	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
cobW	PF02492.19	gi|384434105|ref|YP_005643463.1|	-	0.13	11.9	0.4	5.4	6.6	0.1	2.2	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|384434105|ref|YP_005643463.1|	-	0.13	11.6	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
KTI12	PF08433.10	gi|384434105|ref|YP_005643463.1|	-	0.14	11.6	0.0	0.21	11.0	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
6PF2K	PF01591.18	gi|384434105|ref|YP_005643463.1|	-	0.14	11.4	0.2	3.9	6.7	0.0	2.7	3	0	0	3	3	3	0	6-phosphofructo-2-kinase
AAA_18	PF13238.6	gi|384434105|ref|YP_005643463.1|	-	0.16	12.5	0.1	0.52	10.9	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
UbiA	PF01040.18	gi|384434107|ref|YP_005643465.1|	-	2.8e-38	131.7	19.2	3.7e-38	131.2	19.2	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
AdoMet_dc	PF02675.15	gi|384434110|ref|YP_005643468.1|	-	1.6e-35	121.6	0.0	1.7e-35	121.4	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
DUF211	PF02680.14	gi|384434111|ref|YP_005643469.1|	-	4.2e-35	119.8	3.4	4.7e-35	119.6	3.4	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
ATP_bind_3	PF01171.20	gi|384434112|ref|YP_005643470.1|	-	2.9e-11	43.5	0.0	4.7e-11	42.8	0.0	1.4	1	0	0	1	1	1	1	PP-loop	family
zf-ribbon_3	PF13248.6	gi|384434112|ref|YP_005643470.1|	-	0.0033	16.8	1.8	0.0033	16.8	1.8	4.0	5	0	0	5	5	5	1	zinc-ribbon	domain
PAPS_reduct	PF01507.19	gi|384434112|ref|YP_005643470.1|	-	0.023	14.7	0.0	0.044	13.8	0.0	1.5	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
DZR	PF12773.7	gi|384434112|ref|YP_005643470.1|	-	0.12	12.5	8.3	0.21	11.6	0.2	2.8	3	0	0	3	3	3	0	Double	zinc	ribbon
NAD_synthase	PF02540.17	gi|384434112|ref|YP_005643470.1|	-	0.15	11.1	0.0	0.22	10.6	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
DUF1451	PF07295.11	gi|384434112|ref|YP_005643470.1|	-	0.69	9.9	0.0	0.69	9.9	0.0	2.5	3	0	0	3	3	3	0	Zinc-ribbon	containing	domain
Rpr2	PF04032.16	gi|384434112|ref|YP_005643470.1|	-	1.9	8.8	6.1	31	4.9	0.4	3.6	3	1	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-dskA_traR	PF01258.17	gi|384434112|ref|YP_005643470.1|	-	3.3	7.7	6.2	18	5.3	0.3	3.0	2	1	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Cob_adeno_trans	PF01923.18	gi|384434113|ref|YP_005643471.1|	-	3e-45	154.3	0.0	3.4e-45	154.1	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
tRNA-synt_1	PF00133.22	gi|384434114|ref|YP_005643472.1|	-	4.6e-65	220.0	0.0	1.1e-64	218.8	0.0	1.6	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.11	gi|384434114|ref|YP_005643472.1|	-	6e-26	91.1	0.1	9.5e-14	50.9	0.0	3.0	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|384434114|ref|YP_005643472.1|	-	1.9e-25	89.6	1.3	6.1e-25	88.0	1.3	2.0	1	1	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|384434114|ref|YP_005643472.1|	-	6.1e-15	55.4	0.4	2.4e-08	33.7	0.0	2.8	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|384434114|ref|YP_005643472.1|	-	1.2e-13	51.0	0.1	2.7e-13	49.8	0.1	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
Lge1	PF11488.8	gi|384434114|ref|YP_005643472.1|	-	0.13	12.5	0.7	0.37	11.0	0.7	1.7	1	0	0	1	1	1	0	Transcriptional	regulatory	protein	LGE1
DUF3888	PF13027.6	gi|384434114|ref|YP_005643472.1|	-	0.68	10.4	3.4	2.8	8.4	0.4	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3888)
Phage_rep_org_N	PF09681.10	gi|384434115|ref|YP_005643473.1|	-	0.058	13.3	1.4	0.1	12.6	0.2	1.9	2	0	0	2	2	2	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
IGR	PF09597.10	gi|384434115|ref|YP_005643473.1|	-	0.082	13.0	0.3	0.2	11.8	0.0	1.8	2	0	0	2	2	2	0	IGR	protein	motif
Aminotran_1_2	PF00155.21	gi|384434116|ref|YP_005643474.1|	-	1.1e-43	149.9	0.0	1.2e-43	149.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
HisG	PF01634.18	gi|384434117|ref|YP_005643475.1|	-	6.2e-46	156.3	0.4	8e-46	155.9	0.4	1.1	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|384434117|ref|YP_005643475.1|	-	2.4e-18	66.0	2.1	3.7e-18	65.4	0.4	2.2	2	0	0	2	2	2	1	HisG,	C-terminal	domain
His_biosynth	PF00977.21	gi|384434118|ref|YP_005643476.1|	-	2.2e-51	174.5	2.6	2.5e-51	174.4	2.6	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|384434118|ref|YP_005643476.1|	-	0.0001	21.9	2.5	0.0085	15.6	0.1	2.2	2	0	0	2	2	2	2	PcrB	family
CLU_N	PF15044.6	gi|384434118|ref|YP_005643476.1|	-	0.12	12.8	0.1	8.9	6.8	0.1	2.4	2	0	0	2	2	2	0	Mitochondrial	function,	CLU-N-term
B12-binding	PF02310.19	gi|384434118|ref|YP_005643476.1|	-	0.15	12.1	0.2	4	7.5	0.0	2.3	2	0	0	2	2	2	0	B12	binding	domain
IGPD	PF00475.18	gi|384434119|ref|YP_005643477.1|	-	9.8e-52	175.1	0.1	1.5e-51	174.5	0.1	1.3	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
His_biosynth	PF00977.21	gi|384434120|ref|YP_005643478.1|	-	3e-83	278.8	3.5	3.4e-83	278.6	3.5	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|384434120|ref|YP_005643478.1|	-	6.8e-09	35.6	0.9	0.00071	19.1	0.2	2.1	1	1	1	2	2	2	2	Nitronate	monooxygenase
ThiG	PF05690.14	gi|384434120|ref|YP_005643478.1|	-	5.9e-08	32.3	0.2	6.1e-05	22.5	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
TMP-TENI	PF02581.17	gi|384434120|ref|YP_005643478.1|	-	1.4e-05	24.5	0.1	0.13	11.5	0.0	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase
G3P_antiterm	PF04309.12	gi|384434120|ref|YP_005643478.1|	-	0.00011	21.6	0.1	0.0029	17.0	0.0	2.3	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
Glu_synthase	PF01645.17	gi|384434120|ref|YP_005643478.1|	-	0.0005	19.3	0.1	0.00085	18.6	0.1	1.3	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
Dus	PF01207.17	gi|384434120|ref|YP_005643478.1|	-	0.00056	19.1	0.1	0.054	12.6	0.0	2.1	1	1	1	2	2	2	2	Dihydrouridine	synthase	(Dus)
DHO_dh	PF01180.21	gi|384434120|ref|YP_005643478.1|	-	0.0089	15.3	0.3	0.11	11.7	0.1	2.1	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
FMN_dh	PF01070.18	gi|384434120|ref|YP_005643478.1|	-	0.018	14.1	0.2	0.053	12.5	0.1	1.8	1	1	1	2	2	2	0	FMN-dependent	dehydrogenase
IMPDH	PF00478.25	gi|384434120|ref|YP_005643478.1|	-	0.023	13.7	0.6	0.17	10.8	0.0	2.0	1	1	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Trp_syntA	PF00290.20	gi|384434120|ref|YP_005643478.1|	-	0.024	13.5	0.6	0.043	12.7	0.6	1.4	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DHDPS	PF00701.22	gi|384434120|ref|YP_005643478.1|	-	0.12	11.0	0.8	0.25	10.0	0.3	1.7	2	0	0	2	2	2	0	Dihydrodipicolinate	synthetase	family
Histidinol_dh	PF00815.20	gi|384434121|ref|YP_005643479.1|	-	5.7e-132	440.6	3.8	2.7e-131	438.4	3.8	1.7	1	1	0	1	1	1	1	Histidinol	dehydrogenase
RloB	PF13707.6	gi|384434121|ref|YP_005643479.1|	-	0.075	13.2	4.1	0.089	13.0	0.4	2.1	2	0	0	2	2	2	0	RloB-like	protein
ToxN_toxin	PF13958.6	gi|384434121|ref|YP_005643479.1|	-	0.72	10.1	8.4	2.7	8.2	1.5	2.3	2	0	0	2	2	2	0	Toxin	ToxN,	type	III	toxin-antitoxin	system
DUF4795	PF16043.5	gi|384434121|ref|YP_005643479.1|	-	1.9	8.0	7.1	0.25	10.9	2.3	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4795)
PRA-PH	PF01503.17	gi|384434122|ref|YP_005643480.1|	-	7.1e-20	71.3	0.1	7.9e-20	71.1	0.1	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
GATase	PF00117.28	gi|384434123|ref|YP_005643481.1|	-	3.1e-24	85.8	0.0	3.9e-24	85.5	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|384434123|ref|YP_005643481.1|	-	0.00025	20.7	0.0	0.00063	19.4	0.0	1.6	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|384434123|ref|YP_005643481.1|	-	0.028	14.3	0.0	1.8	8.4	0.0	2.0	2	0	0	2	2	2	0	SNO	glutamine	amidotransferase	family
GATase_5	PF13507.6	gi|384434123|ref|YP_005643481.1|	-	0.11	11.5	0.1	0.2	10.7	0.1	1.5	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
PRA-CH	PF01502.18	gi|384434124|ref|YP_005643482.1|	-	7.2e-31	105.9	0.0	9.7e-31	105.4	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
W_rich_C	PF07483.11	gi|384434124|ref|YP_005643482.1|	-	0.056	13.6	0.1	0.073	13.2	0.1	1.2	1	0	0	1	1	1	0	Tryptophan-rich	Synechocystis	species	C-terminal	domain
FeS_assembly_P	PF01883.19	gi|384434125|ref|YP_005643483.1|	-	2.2e-20	72.6	0.3	3.2e-20	72.1	0.3	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
YqhG	PF11079.8	gi|384434125|ref|YP_005643483.1|	-	0.012	14.5	0.1	0.029	13.4	0.0	1.5	2	0	0	2	2	2	0	Bacterial	protein	YqhG	of	unknown	function
NifU	PF01106.17	gi|384434125|ref|YP_005643483.1|	-	0.028	14.5	0.0	0.046	13.9	0.0	1.4	1	1	0	1	1	1	0	NifU-like	domain
tRNA-synt_2b	PF00587.25	gi|384434126|ref|YP_005643484.1|	-	4.9e-39	134.1	0.1	9.1e-39	133.3	0.1	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.22	gi|384434126|ref|YP_005643484.1|	-	2.8e-21	75.8	13.6	2.8e-21	75.8	13.6	2.1	2	0	0	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
FYRC	PF05965.14	gi|384434126|ref|YP_005643484.1|	-	0.015	15.4	0.1	0.058	13.6	0.1	2.0	1	0	0	1	1	1	0	F/Y	rich	C-terminus
MREG	PF15812.5	gi|384434126|ref|YP_005643484.1|	-	0.017	15.5	1.4	0.051	13.9	1.5	1.7	2	0	0	2	2	2	0	Melanoregulin
APG6_N	PF17675.1	gi|384434126|ref|YP_005643484.1|	-	0.054	14.0	15.0	0.27	11.8	11.4	3.0	3	0	0	3	3	3	0	Apg6	coiled-coil	region
PCRF	PF03462.18	gi|384434126|ref|YP_005643484.1|	-	0.15	11.9	3.2	0.15	11.9	1.6	1.9	2	0	0	2	2	2	0	PCRF	domain
YkyA	PF10368.9	gi|384434126|ref|YP_005643484.1|	-	0.17	11.5	9.7	0.1	12.3	7.4	1.7	2	0	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
TMF_DNA_bd	PF12329.8	gi|384434126|ref|YP_005643484.1|	-	0.37	10.8	15.5	0.84	9.7	15.5	1.6	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
FapA	PF03961.13	gi|384434126|ref|YP_005643484.1|	-	0.38	9.3	5.4	0.85	8.1	5.4	1.5	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
AAA_23	PF13476.6	gi|384434126|ref|YP_005643484.1|	-	1.1	9.7	8.1	0.3	11.6	4.9	1.8	2	0	0	2	2	2	0	AAA	domain
Spore_III_AB	PF09548.10	gi|384434126|ref|YP_005643484.1|	-	1.3	9.1	4.6	3.1	7.9	4.6	1.6	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
Radical_SAM	PF04055.21	gi|384434127|ref|YP_005643485.1|	-	3.2e-17	63.4	0.1	6.9e-17	62.3	0.1	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
B12-binding	PF02310.19	gi|384434127|ref|YP_005643485.1|	-	0.12	12.4	0.0	0.43	10.6	0.0	1.9	2	0	0	2	2	2	0	B12	binding	domain
DUF2724	PF10893.8	gi|384434128|ref|YP_005643486.1|	-	0.11	12.3	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2724)
RNA_POL_M_15KD	PF02150.16	gi|384434129|ref|YP_005643487.1|	-	2.8e-09	36.7	4.0	3.1e-09	36.6	2.2	2.1	2	1	1	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
zf-NADH-PPase	PF09297.11	gi|384434129|ref|YP_005643487.1|	-	9.1e-05	22.0	0.5	0.057	13.1	0.1	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|384434129|ref|YP_005643487.1|	-	0.00061	19.1	1.3	0.001	18.4	1.3	1.4	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
IBR	PF01485.21	gi|384434129|ref|YP_005643487.1|	-	0.0012	19.1	1.6	0.0018	18.4	1.5	1.5	1	1	0	1	1	1	1	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_2	PF13240.6	gi|384434129|ref|YP_005643487.1|	-	0.0029	17.3	5.6	0.64	9.8	1.7	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|384434129|ref|YP_005643487.1|	-	0.0067	16.2	5.3	0.27	11.0	0.6	2.3	2	0	0	2	2	2	2	Topoisomerase	DNA	binding	C4	zinc	finger
zf-C3HC	PF07967.13	gi|384434129|ref|YP_005643487.1|	-	0.0084	16.1	0.4	0.0092	16.0	0.4	1.3	1	0	0	1	1	1	1	C3HC	zinc	finger-like
Nudix_N_2	PF14803.6	gi|384434129|ref|YP_005643487.1|	-	0.009	15.9	2.5	0.11	12.4	3.1	2.2	1	1	1	2	2	2	1	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.7	gi|384434129|ref|YP_005643487.1|	-	0.012	15.6	0.8	0.021	14.8	0.8	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.6	gi|384434129|ref|YP_005643487.1|	-	0.013	16.0	3.2	1.4	9.5	0.3	2.3	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-ribbon_3	PF13248.6	gi|384434129|ref|YP_005643487.1|	-	0.015	14.7	3.5	0.42	10.1	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|384434129|ref|YP_005643487.1|	-	0.017	15.1	0.5	0.029	14.4	0.5	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-piccolo	PF05715.13	gi|384434129|ref|YP_005643487.1|	-	0.02	15.1	0.5	1.1	9.4	0.0	2.2	1	1	1	2	2	2	0	Piccolo	Zn-finger
Lar_restr_allev	PF14354.6	gi|384434129|ref|YP_005643487.1|	-	0.022	15.1	0.7	0.045	14.1	0.7	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF2387	PF09526.10	gi|384434129|ref|YP_005643487.1|	-	0.022	14.9	1.1	0.039	14.1	1.1	1.6	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
C1_1	PF00130.22	gi|384434129|ref|YP_005643487.1|	-	0.031	14.2	1.2	0.046	13.6	1.2	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
A2L_zn_ribbon	PF08792.10	gi|384434129|ref|YP_005643487.1|	-	0.064	13.0	2.6	1.5	8.7	0.3	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384434129|ref|YP_005643487.1|	-	0.11	12.4	2.2	0.17	11.8	0.7	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.9	gi|384434129|ref|YP_005643487.1|	-	0.11	12.5	4.5	5.9	7.1	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
GFA	PF04828.14	gi|384434129|ref|YP_005643487.1|	-	0.14	12.5	1.3	6	7.3	0.1	2.3	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zinc_ribbon_15	PF17032.5	gi|384434129|ref|YP_005643487.1|	-	0.2	12.5	5.3	0.42	11.4	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	family
zf-IS66	PF13005.7	gi|384434129|ref|YP_005643487.1|	-	0.37	11.2	0.2	0.37	11.2	0.2	3.0	2	2	2	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_4	PF13717.6	gi|384434129|ref|YP_005643487.1|	-	0.74	9.8	3.5	4.2	7.4	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-tcix	PF14952.6	gi|384434129|ref|YP_005643487.1|	-	1	9.1	5.3	9.7	5.9	0.3	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf_UBZ	PF18439.1	gi|384434129|ref|YP_005643487.1|	-	7	6.3	7.1	14	5.4	0.1	2.8	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
AsnC_trans_reg	PF01037.21	gi|384434130|ref|YP_005643488.1|	-	4.4e-18	65.0	0.3	8.6e-18	64.1	0.3	1.5	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|384434130|ref|YP_005643488.1|	-	4.7e-13	48.5	3.2	1.6e-12	46.8	0.3	2.6	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|384434130|ref|YP_005643488.1|	-	5.1e-12	45.4	3.4	1.3e-11	44.1	3.4	1.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|384434130|ref|YP_005643488.1|	-	1.7e-05	24.6	0.2	2.9e-05	23.9	0.2	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|384434130|ref|YP_005643488.1|	-	0.0017	18.7	0.1	0.006	16.9	0.0	1.9	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_50	PF18024.1	gi|384434130|ref|YP_005643488.1|	-	0.002	17.7	0.2	0.01	15.5	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|384434130|ref|YP_005643488.1|	-	0.0022	17.9	0.7	0.0042	17.0	0.2	1.7	2	0	0	2	2	1	1	MarR	family
HTH_11	PF08279.12	gi|384434130|ref|YP_005643488.1|	-	0.0025	17.7	0.1	0.0054	16.6	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
AsnC_trans_reg2	PF17805.1	gi|384434130|ref|YP_005643488.1|	-	0.004	17.3	0.0	0.009	16.1	0.0	1.6	2	0	0	2	2	2	1	AsnC-like	ligand	binding	domain
HTH_10	PF04967.12	gi|384434130|ref|YP_005643488.1|	-	0.0072	16.1	0.0	0.014	15.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|384434130|ref|YP_005643488.1|	-	0.012	15.8	0.1	0.036	14.3	0.1	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.10	gi|384434130|ref|YP_005643488.1|	-	0.019	14.8	0.3	0.032	14.0	0.3	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|384434130|ref|YP_005643488.1|	-	0.023	14.5	0.1	0.04	13.7	0.1	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_38	PF13936.6	gi|384434130|ref|YP_005643488.1|	-	0.026	14.3	0.6	0.05	13.4	0.6	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|384434130|ref|YP_005643488.1|	-	0.026	14.5	0.3	0.05	13.6	0.3	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
ANAPC2	PF08672.11	gi|384434130|ref|YP_005643488.1|	-	0.033	14.7	0.1	9.5	6.8	0.0	2.3	2	0	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
HTH_20	PF12840.7	gi|384434130|ref|YP_005643488.1|	-	0.036	14.1	0.5	0.058	13.5	0.5	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_30	PF13556.6	gi|384434130|ref|YP_005643488.1|	-	0.047	13.5	0.6	0.098	12.5	0.3	1.7	1	1	1	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
GntR	PF00392.21	gi|384434130|ref|YP_005643488.1|	-	0.061	13.0	0.2	0.097	12.3	0.2	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
SpoIIID	PF12116.8	gi|384434130|ref|YP_005643488.1|	-	0.11	12.6	0.0	0.26	11.4	0.0	1.7	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
HTH_7	PF02796.15	gi|384434130|ref|YP_005643488.1|	-	0.12	12.5	0.1	5	7.3	0.0	2.4	1	1	1	2	2	2	0	Helix-turn-helix	domain	of	resolvase
TetR_N	PF00440.23	gi|384434130|ref|YP_005643488.1|	-	0.12	12.2	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
MIase	PF02426.16	gi|384434130|ref|YP_005643488.1|	-	0.12	12.5	0.0	0.31	11.2	0.0	1.6	2	0	0	2	2	2	0	Muconolactone	delta-isomerase
DUF2518	PF10726.9	gi|384434130|ref|YP_005643488.1|	-	0.15	11.8	0.6	0.68	9.6	0.6	1.9	1	1	0	1	1	1	0	Protein	of	function	(DUF2518)
MarC	PF01914.17	gi|384434131|ref|YP_005643489.1|	-	2.1e-34	118.7	18.7	2.5e-34	118.4	18.7	1.0	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
DUF3693	PF12472.8	gi|384434131|ref|YP_005643489.1|	-	0.011	15.4	0.1	0.11	12.1	0.0	2.3	2	0	0	2	2	2	0	Phage	related	protein
DUF4239	PF14023.6	gi|384434131|ref|YP_005643489.1|	-	2.1	8.0	4.9	0.26	11.0	0.7	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4239)
RPN7	PF10602.9	gi|384434132|ref|YP_005643490.1|	-	0.0034	17.1	1.6	0.0039	16.9	1.6	1.0	1	0	0	1	1	1	1	26S	proteasome	subunit	RPN7
DUF677	PF05055.12	gi|384434132|ref|YP_005643490.1|	-	0.0048	15.8	0.8	0.0064	15.4	0.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF677)
Seryl_tRNA_N	PF02403.22	gi|384434132|ref|YP_005643490.1|	-	0.0094	16.2	6.0	0.032	14.5	6.0	1.9	1	1	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
DUF5623	PF18536.1	gi|384434132|ref|YP_005643490.1|	-	0.013	15.8	0.6	0.99	9.7	0.5	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5623)
CLZ	PF16526.5	gi|384434132|ref|YP_005643490.1|	-	0.065	13.6	0.3	0.065	13.6	0.3	2.2	2	1	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
MCC-bdg_PDZ	PF10506.9	gi|384434132|ref|YP_005643490.1|	-	0.14	12.2	2.0	0.21	11.6	1.0	1.8	2	1	0	2	2	2	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
COG5	PF10392.9	gi|384434132|ref|YP_005643490.1|	-	0.27	11.4	4.0	0.47	10.6	4.0	1.5	1	1	0	1	1	1	0	Golgi	transport	complex	subunit	5
DUF1664	PF07889.12	gi|384434132|ref|YP_005643490.1|	-	0.35	10.9	2.4	0.44	10.6	1.5	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|384434132|ref|YP_005643490.1|	-	1.2	9.6	10.4	1.7	9.1	1.8	2.8	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.15	gi|384434132|ref|YP_005643490.1|	-	1.5	8.7	8.2	1	9.2	0.5	2.5	2	1	1	3	3	3	0	Septum	formation	initiator
ZapB	PF06005.12	gi|384434132|ref|YP_005643490.1|	-	2.2	8.8	9.5	1	9.9	3.7	2.3	1	1	1	2	2	2	0	Cell	division	protein	ZapB
DUF724	PF05266.14	gi|384434132|ref|YP_005643490.1|	-	2.5	7.9	9.4	1.1	9.0	5.0	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
DHO_dh	PF01180.21	gi|384434134|ref|YP_005643492.1|	-	1.1e-45	156.2	4.1	2.3e-45	155.1	4.1	1.5	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|384434134|ref|YP_005643492.1|	-	5.9e-05	22.3	0.1	0.00052	19.2	0.1	2.0	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|384434134|ref|YP_005643492.1|	-	0.0053	16.2	0.5	0.01	15.2	0.1	1.6	2	0	0	2	2	2	1	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|384434134|ref|YP_005643492.1|	-	0.0068	15.5	0.6	0.013	14.5	0.2	1.6	2	0	0	2	2	2	1	IMP	dehydrogenase	/	GMP	reductase	domain
His_biosynth	PF00977.21	gi|384434134|ref|YP_005643492.1|	-	0.026	14.0	1.0	0.21	11.0	0.0	2.4	3	1	0	3	3	3	0	Histidine	biosynthesis	protein
G3P_antiterm	PF04309.12	gi|384434134|ref|YP_005643492.1|	-	0.062	12.7	0.5	5.4	6.4	0.0	3.0	3	0	0	3	3	3	0	Glycerol-3-phosphate	responsive	antiterminator
NeuB	PF03102.14	gi|384434134|ref|YP_005643492.1|	-	0.17	11.3	0.2	0.73	9.2	0.1	1.9	2	0	0	2	2	2	0	NeuB	family
FMN_dh	PF01070.18	gi|384434134|ref|YP_005643492.1|	-	1.2	8.0	5.7	6.9	5.6	5.7	2.0	1	1	0	1	1	1	0	FMN-dependent	dehydrogenase
Amidohydro_1	PF01979.20	gi|384434135|ref|YP_005643493.1|	-	9.8e-14	51.4	0.0	7.2e-07	28.8	0.0	2.1	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|384434135|ref|YP_005643493.1|	-	0.0025	17.4	0.0	1.2	8.5	0.0	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
DHODB_Fe-S_bind	PF10418.9	gi|384434136|ref|YP_005643494.1|	-	0.00098	18.9	3.7	0.00098	18.9	3.7	1.6	2	0	0	2	2	2	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
DUF868	PF05910.12	gi|384434136|ref|YP_005643494.1|	-	0.17	11.4	0.0	1.1	8.9	0.0	1.9	2	0	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF868)
PyrI	PF01948.18	gi|384434137|ref|YP_005643495.1|	-	5.7e-33	113.0	2.1	8.4e-33	112.5	2.1	1.3	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|384434137|ref|YP_005643495.1|	-	1.2e-17	63.5	2.6	2e-17	62.8	2.6	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-U1	PF06220.12	gi|384434137|ref|YP_005643495.1|	-	0.062	13.1	0.4	0.11	12.2	0.4	1.4	1	0	0	1	1	1	0	U1	zinc	finger
OTCace_N	PF02729.21	gi|384434138|ref|YP_005643496.1|	-	8.1e-39	133.0	0.0	2.3e-38	131.5	0.0	1.7	2	1	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|384434138|ref|YP_005643496.1|	-	2.5e-24	86.2	0.1	1.6e-23	83.5	0.0	2.0	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Pribosyltran	PF00156.27	gi|384434139|ref|YP_005643497.1|	-	5.9e-18	64.9	0.1	8e-18	64.5	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|384434139|ref|YP_005643497.1|	-	0.071	12.5	0.0	0.081	12.4	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
OMPdecase	PF00215.24	gi|384434140|ref|YP_005643498.1|	-	3.6e-23	82.3	0.0	4.5e-23	82.0	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Prok-JAB	PF14464.6	gi|384434141|ref|YP_005643499.1|	-	0.063	13.1	0.1	0.1	12.4	0.1	1.3	1	0	0	1	1	1	0	Prokaryotic	homologs	of	the	JAB	domain
PhoU	PF01895.19	gi|384434142|ref|YP_005643500.1|	-	1.2e-22	80.2	9.5	3.3e-18	65.9	1.5	2.4	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|384434142|ref|YP_005643500.1|	-	1.3e-12	47.3	0.0	2.6e-12	46.4	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
IL2	PF00715.17	gi|384434143|ref|YP_005643501.1|	-	0.028	14.4	1.1	0.072	13.0	0.5	1.9	1	1	1	2	2	2	0	Interleukin	2
HTH_5	PF01022.20	gi|384434144|ref|YP_005643502.1|	-	6.6e-10	38.7	0.1	9e-10	38.3	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384434144|ref|YP_005643502.1|	-	5.5e-06	26.3	0.0	9.7e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|384434144|ref|YP_005643502.1|	-	0.00017	21.4	0.1	0.00029	20.7	0.1	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|384434144|ref|YP_005643502.1|	-	0.0014	18.6	0.4	0.0021	18.0	0.4	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|384434144|ref|YP_005643502.1|	-	0.0047	16.4	0.4	0.0097	15.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_40	PF14493.6	gi|384434144|ref|YP_005643502.1|	-	0.02	15.3	0.0	0.026	15.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|384434144|ref|YP_005643502.1|	-	0.025	14.5	0.0	0.06	13.3	0.0	1.7	2	1	0	2	2	2	0	MarR	family
HTH_29	PF13551.6	gi|384434144|ref|YP_005643502.1|	-	0.043	13.8	0.0	0.076	13.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Penicillinase_R	PF03965.16	gi|384434144|ref|YP_005643502.1|	-	0.057	13.8	0.1	0.18	12.1	0.0	1.8	1	1	1	2	2	2	0	Penicillinase	repressor
DUF348	PF03990.14	gi|384434144|ref|YP_005643502.1|	-	0.058	13.1	0.0	0.82	9.5	0.0	2.2	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
TYW3	PF02676.14	gi|384434146|ref|YP_005643504.1|	-	1e-31	110.0	0.0	1.4e-31	109.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	TYW3
PSP1	PF04468.12	gi|384434146|ref|YP_005643504.1|	-	0.034	14.4	0.9	0.095	13.0	0.0	2.1	2	0	0	2	2	2	0	PSP1	C-terminal	conserved	region
Fer4_14	PF13394.6	gi|384434147|ref|YP_005643505.1|	-	8.1e-15	55.0	0.1	1.5e-14	54.1	0.1	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.21	gi|384434147|ref|YP_005643505.1|	-	6.7e-13	49.4	0.0	1.9e-12	47.9	0.1	1.6	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434147|ref|YP_005643505.1|	-	8.5e-10	39.0	0.0	1.4e-09	38.4	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
NOG1_N	PF17835.1	gi|384434148|ref|YP_005643506.1|	-	3.5e-45	153.8	3.6	3.5e-45	153.8	3.6	1.7	2	0	0	2	2	2	1	NOG1	N-terminal	helical	domain
MMR_HSR1	PF01926.23	gi|384434148|ref|YP_005643506.1|	-	1.3e-19	70.4	0.1	2.8e-19	69.3	0.1	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
NOG1	PF06858.14	gi|384434148|ref|YP_005643506.1|	-	2.2e-15	56.1	0.1	6e-15	54.8	0.1	1.8	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.18	gi|384434148|ref|YP_005643506.1|	-	2.5e-13	49.9	0.0	4e-13	49.2	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|384434148|ref|YP_005643506.1|	-	1.7e-05	24.4	0.2	0.046	13.2	0.2	3.2	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
SRPRB	PF09439.10	gi|384434148|ref|YP_005643506.1|	-	8.8e-05	22.0	1.0	0.00025	20.5	0.1	2.1	2	0	0	2	2	2	1	Signal	recognition	particle	receptor	beta	subunit
AAA_18	PF13238.6	gi|384434148|ref|YP_005643506.1|	-	0.00014	22.4	0.1	0.0037	17.8	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
MMR_HSR1_Xtn	PF16897.5	gi|384434148|ref|YP_005643506.1|	-	0.00021	21.3	3.2	0.00021	21.2	0.2	2.4	2	1	1	3	3	3	1	C-terminal	region	of	MMR_HSR1	domain
AIG1	PF04548.16	gi|384434148|ref|YP_005643506.1|	-	0.00022	20.6	0.0	0.00036	19.9	0.0	1.4	1	0	0	1	1	1	1	AIG1	family
RsgA_GTPase	PF03193.16	gi|384434148|ref|YP_005643506.1|	-	0.00032	20.7	3.0	0.22	11.4	0.3	3.1	1	1	1	2	2	2	2	RsgA	GTPase
PduV-EutP	PF10662.9	gi|384434148|ref|YP_005643506.1|	-	0.0029	17.4	0.4	0.043	13.6	0.1	2.8	2	1	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.6	gi|384434148|ref|YP_005643506.1|	-	0.0047	17.3	0.1	0.11	12.9	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
Dynamin_N	PF00350.23	gi|384434148|ref|YP_005643506.1|	-	0.0078	16.3	4.0	0.12	12.4	0.0	3.1	2	2	1	3	3	3	1	Dynamin	family
NTPase_1	PF03266.15	gi|384434148|ref|YP_005643506.1|	-	0.012	15.6	0.2	0.038	13.9	0.0	2.1	2	1	0	2	2	2	0	NTPase
Roc	PF08477.13	gi|384434148|ref|YP_005643506.1|	-	0.024	14.9	0.1	0.4	10.9	0.0	2.8	2	2	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DUF577	PF04510.12	gi|384434148|ref|YP_005643506.1|	-	0.35	10.7	2.3	11	5.9	0.2	2.2	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF577)
tRNA_bind	PF01588.20	gi|384434149|ref|YP_005643507.1|	-	1.3e-26	92.6	0.0	1.4e-26	92.4	0.0	1.0	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
SAICAR_synt	PF01259.18	gi|384434150|ref|YP_005643508.1|	-	7.7e-55	186.2	1.2	8.7e-55	186.1	1.2	1.0	1	0	0	1	1	1	1	SAICAR	synthetase
PurS	PF02700.14	gi|384434151|ref|YP_005643509.1|	-	7.2e-19	67.7	1.7	8e-19	67.6	1.7	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
DUF2004	PF09406.10	gi|384434151|ref|YP_005643509.1|	-	0.026	14.9	0.1	0.034	14.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2004)
DUF1462	PF07315.11	gi|384434151|ref|YP_005643509.1|	-	0.044	14.1	0.9	0.061	13.6	0.5	1.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1462)
GATase_5	PF13507.6	gi|384434152|ref|YP_005643510.1|	-	4.8e-43	147.1	0.0	6e-43	146.8	0.0	1.0	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|384434152|ref|YP_005643510.1|	-	1e-10	41.7	0.0	1.7e-10	41.0	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.14	gi|384434152|ref|YP_005643510.1|	-	2.2e-07	30.7	0.0	3.1e-07	30.2	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|384434152|ref|YP_005643510.1|	-	1.4e-05	25.0	0.0	1.8e-05	24.6	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
AIRS_C	PF02769.22	gi|384434153|ref|YP_005643511.1|	-	1.3e-41	142.4	0.5	1.2e-27	97.0	0.5	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|384434153|ref|YP_005643511.1|	-	2.6e-41	140.2	2.4	2.3e-22	79.4	0.4	2.5	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
FGAR-AT_linker	PF18072.1	gi|384434153|ref|YP_005643511.1|	-	2.9e-10	40.5	0.2	7.1e-10	39.3	0.0	1.8	2	0	0	2	2	2	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
GATase_6	PF13522.6	gi|384434154|ref|YP_005643512.1|	-	1.3e-09	38.3	0.0	3.3e-09	37.1	0.0	1.8	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|384434154|ref|YP_005643512.1|	-	2e-09	37.4	0.0	1.8e-08	34.3	0.0	2.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|384434154|ref|YP_005643512.1|	-	8e-09	35.2	0.1	1.7e-08	34.1	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|384434154|ref|YP_005643512.1|	-	0.029	13.9	0.0	0.047	13.2	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
Pribosyltran	PF00156.27	gi|384434155|ref|YP_005643513.1|	-	5.8e-11	42.2	0.8	3.3e-10	39.7	0.3	2.3	2	1	0	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|384434155|ref|YP_005643513.1|	-	0.0085	15.6	0.0	0.021	14.3	0.0	1.5	2	0	0	2	2	2	1	Phosphoribosyl	transferase
GATase_7	PF13537.6	gi|384434155|ref|YP_005643513.1|	-	0.079	12.9	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Glutamine	amidotransferase	domain
GARS_A	PF01071.19	gi|384434156|ref|YP_005643514.1|	-	4.1e-42	144.2	0.0	8.6e-42	143.1	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|384434156|ref|YP_005643514.1|	-	1.6e-22	80.0	0.0	3e-22	79.2	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|384434156|ref|YP_005643514.1|	-	1.7e-09	37.9	0.0	3.4e-09	36.8	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.6	gi|384434156|ref|YP_005643514.1|	-	6.5e-05	22.6	0.0	0.00018	21.2	0.0	1.7	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|384434156|ref|YP_005643514.1|	-	0.0013	18.2	0.0	0.0035	16.9	0.0	1.6	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_ST	PF14397.6	gi|384434156|ref|YP_005643514.1|	-	0.0028	16.9	0.0	0.0048	16.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
AIRS_C	PF02769.22	gi|384434157|ref|YP_005643515.1|	-	9.3e-27	94.1	0.0	1.7e-26	93.2	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|384434157|ref|YP_005643515.1|	-	1.7e-17	63.9	3.6	2e-17	63.6	1.8	1.9	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
PapB	PF03333.13	gi|384434158|ref|YP_005643516.1|	-	0.0062	16.5	0.2	0.019	15.0	0.0	1.8	2	0	0	2	2	2	1	Adhesin	biosynthesis	transcription	regulatory	protein
DUF1967	PF09269.11	gi|384434158|ref|YP_005643516.1|	-	0.084	12.8	0.1	0.26	11.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1967)
OrsD	PF12013.8	gi|384434158|ref|YP_005643516.1|	-	0.089	13.2	0.1	0.15	12.5	0.1	1.3	1	0	0	1	1	1	0	Orsellinic	acid/F9775	biosynthesis	cluster	protein	D
RHH_1	PF01402.21	gi|384434159|ref|YP_005643517.1|	-	2.9e-07	30.2	0.0	3.1e-07	30.1	0.0	1.0	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Arginosuc_synth	PF00764.19	gi|384434160|ref|YP_005643518.1|	-	1.2e-143	479.1	0.2	1.4e-143	478.9	0.2	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|384434160|ref|YP_005643518.1|	-	9.5e-05	22.0	0.1	0.00054	19.5	0.1	2.0	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Phage_30_8	PF06019.11	gi|384434160|ref|YP_005643518.1|	-	0.062	13.2	0.1	14	5.6	0.0	2.5	2	0	0	2	2	2	0	Phage	GP30.8	protein
Lyase_1	PF00206.20	gi|384434161|ref|YP_005643519.1|	-	1.2e-48	166.1	0.1	1.7e-48	165.6	0.1	1.2	1	0	0	1	1	1	1	Lyase
CPSase_sm_chain	PF00988.22	gi|384434162|ref|YP_005643520.1|	-	2.7e-48	163.0	0.1	4.1e-48	162.4	0.1	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.28	gi|384434162|ref|YP_005643520.1|	-	6.2e-45	153.3	0.0	8.8e-45	152.8	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|384434162|ref|YP_005643520.1|	-	1e-06	28.7	0.2	0.00015	21.6	0.1	2.2	1	1	1	2	2	2	2	Peptidase	C26
RdgC	PF04381.12	gi|384434162|ref|YP_005643520.1|	-	0.21	10.8	0.0	0.29	10.3	0.0	1.1	1	0	0	1	1	1	0	Putative	exonuclease,	RdgC
CPSase_L_D2	PF02786.17	gi|384434163|ref|YP_005643521.1|	-	1.8e-96	321.7	0.0	1e-64	217.9	0.0	2.4	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|384434163|ref|YP_005643521.1|	-	1.5e-32	112.5	2.4	3.3e-32	111.4	1.3	2.2	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.22	gi|384434163|ref|YP_005643521.1|	-	3.4e-17	62.5	0.0	1.1e-08	34.9	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|384434163|ref|YP_005643521.1|	-	6.7e-15	55.0	0.0	1.4e-07	31.3	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.13	gi|384434163|ref|YP_005643521.1|	-	1.1e-12	48.0	0.1	7.9e-07	28.8	0.1	2.7	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|384434163|ref|YP_005643521.1|	-	3.5e-08	33.7	1.0	0.00025	21.1	0.2	3.1	2	1	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.19	gi|384434163|ref|YP_005643521.1|	-	7.2e-06	25.9	0.0	0.00066	19.5	0.0	2.9	2	1	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.6	gi|384434163|ref|YP_005643521.1|	-	0.00013	21.5	0.0	0.21	11.0	0.0	3.2	2	1	1	3	3	3	2	ATP-grasp	domain
RimK	PF08443.11	gi|384434163|ref|YP_005643521.1|	-	0.0002	21.0	0.1	0.048	13.2	0.0	3.2	3	0	0	3	3	3	1	RimK-like	ATP-grasp	domain
MGS	PF02142.22	gi|384434163|ref|YP_005643521.1|	-	0.0027	17.8	0.2	4.1	7.6	0.1	3.7	3	0	0	3	3	3	1	MGS-like	domain
UBA_6	PF18039.1	gi|384434163|ref|YP_005643521.1|	-	0.01	15.7	0.0	0.095	12.6	0.1	2.6	2	0	0	2	2	2	0	UBA-like	domain
HTH_23	PF13384.6	gi|384434163|ref|YP_005643521.1|	-	0.02	14.7	0.0	0.14	12.0	0.0	2.5	2	0	0	2	2	2	0	Homeodomain-like	domain
ATP-synt_F	PF01990.17	gi|384434163|ref|YP_005643521.1|	-	0.059	13.7	1.0	22	5.4	0.0	4.4	6	0	0	6	6	4	0	ATP	synthase	(F/14-kDa)	subunit
ATP-grasp_2	PF08442.10	gi|384434163|ref|YP_005643521.1|	-	0.099	12.2	0.0	2.9	7.4	0.0	2.8	3	0	0	3	3	3	0	ATP-grasp	domain
RmlD_sub_bind	PF04321.17	gi|384434163|ref|YP_005643521.1|	-	0.13	11.3	0.0	4.2	6.4	0.0	2.6	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
RimK	PF08443.11	gi|384434164|ref|YP_005643522.1|	-	4.4e-33	114.5	0.1	1.5e-32	112.8	0.0	1.7	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|384434164|ref|YP_005643522.1|	-	1.6e-09	38.0	0.0	2.8e-09	37.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|384434164|ref|YP_005643522.1|	-	1.1e-08	34.7	0.1	2.1e-08	33.8	0.0	1.5	2	0	0	2	2	2	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|384434164|ref|YP_005643522.1|	-	0.00076	18.8	0.0	0.12	11.6	0.0	2.2	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp	PF02222.22	gi|384434164|ref|YP_005643522.1|	-	0.0012	18.5	0.0	0.011	15.3	0.0	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|384434164|ref|YP_005643522.1|	-	0.024	14.1	0.0	0.33	10.5	0.0	2.2	2	0	0	2	2	2	0	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.6	gi|384434164|ref|YP_005643522.1|	-	0.051	13.0	0.0	0.11	11.9	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|384434164|ref|YP_005643522.1|	-	0.071	12.6	0.0	0.11	12.0	0.0	1.5	1	1	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Translin	PF01997.16	gi|384434165|ref|YP_005643523.1|	-	6e-06	26.4	0.2	0.0013	18.7	0.0	2.1	1	1	1	2	2	2	2	Translin	family
CREPT	PF16566.5	gi|384434165|ref|YP_005643523.1|	-	0.086	13.0	0.1	0.24	11.6	0.0	1.7	2	0	0	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Flu_NS2	PF00601.19	gi|384434165|ref|YP_005643523.1|	-	0.2	12.0	1.8	6.4	7.1	0.1	2.8	2	1	0	3	3	3	0	Influenza	non-structural	protein	(NS2)
3HCDH_N	PF02737.18	gi|384434166|ref|YP_005643524.1|	-	2.7e-54	183.8	0.5	5.1e-54	182.9	0.1	1.6	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|384434166|ref|YP_005643524.1|	-	9.9e-21	74.2	0.1	2.4e-20	73.0	0.1	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|384434166|ref|YP_005643524.1|	-	1.2e-08	35.2	0.2	7e-08	32.8	0.1	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|384434166|ref|YP_005643524.1|	-	0.0018	18.2	0.2	0.0041	17.1	0.2	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.27	gi|384434166|ref|YP_005643524.1|	-	0.0029	18.1	0.1	0.0093	16.5	0.1	2.0	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|384434166|ref|YP_005643524.1|	-	0.015	15.9	0.1	0.045	14.3	0.1	2.0	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|384434166|ref|YP_005643524.1|	-	0.029	14.4	2.1	0.19	11.8	0.2	2.5	1	1	1	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|384434166|ref|YP_005643524.1|	-	0.032	14.6	0.0	0.066	13.7	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|384434166|ref|YP_005643524.1|	-	0.033	13.8	0.0	0.064	12.9	0.0	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
TrmB	PF01978.19	gi|384434166|ref|YP_005643524.1|	-	0.034	14.0	0.4	13	5.8	0.0	3.1	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
Pyr_redox_2	PF07992.14	gi|384434166|ref|YP_005643524.1|	-	0.046	13.0	0.0	0.086	12.1	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|384434166|ref|YP_005643524.1|	-	0.053	12.8	0.1	0.11	11.8	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|384434166|ref|YP_005643524.1|	-	0.11	11.8	0.1	0.26	10.6	0.1	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Cupin_2	PF07883.11	gi|384434167|ref|YP_005643525.1|	-	1.3e-14	53.6	0.1	2.2e-14	52.9	0.1	1.3	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|384434167|ref|YP_005643525.1|	-	8.2e-08	32.2	0.0	1.2e-07	31.7	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|384434167|ref|YP_005643525.1|	-	8.3e-08	32.0	0.0	1.3e-07	31.3	0.0	1.4	1	0	0	1	1	1	1	Cupin
CENP-C_C	PF11699.8	gi|384434167|ref|YP_005643525.1|	-	0.00065	19.9	0.0	0.0012	19.0	0.0	1.5	1	0	0	1	1	1	1	Mif2/CENP-C	like
ARD	PF03079.14	gi|384434167|ref|YP_005643525.1|	-	0.013	15.7	0.9	0.021	15.0	0.1	1.6	2	0	0	2	2	2	0	ARD/ARD'	family
GPI	PF06560.11	gi|384434167|ref|YP_005643525.1|	-	0.027	13.7	0.0	0.046	13.0	0.0	1.4	1	0	0	1	1	1	0	Glucose-6-phosphate	isomerase	(GPI)
DMSP_lyase	PF16867.5	gi|384434167|ref|YP_005643525.1|	-	0.039	13.6	0.0	0.049	13.3	0.0	1.2	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
Cupin_7	PF12973.7	gi|384434167|ref|YP_005643525.1|	-	0.065	13.2	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	ChrR	Cupin-like	domain
Asp_Arg_Hydrox	PF05118.15	gi|384434167|ref|YP_005643525.1|	-	0.067	13.0	0.1	0.17	11.7	0.1	2.0	1	1	0	1	1	1	0	Aspartyl/Asparaginyl	beta-hydroxylase
Auxin_BP	PF02041.16	gi|384434167|ref|YP_005643525.1|	-	0.078	12.6	0.1	0.19	11.3	0.1	1.7	1	1	0	1	1	1	0	Auxin	binding	protein
MannoseP_isomer	PF01050.18	gi|384434167|ref|YP_005643525.1|	-	0.09	12.7	0.1	0.26	11.2	0.0	1.7	2	0	0	2	2	2	0	Mannose-6-phosphate	isomerase
Ribosomal_L7Ae	PF01248.26	gi|384434167|ref|YP_005643525.1|	-	0.19	11.5	0.3	0.28	10.9	0.3	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
DUF658	PF04936.12	gi|384434168|ref|YP_005643526.1|	-	0.073	12.8	0.0	0.1	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF658)
MARVEL	PF01284.23	gi|384434168|ref|YP_005643526.1|	-	0.27	11.3	7.0	0.14	12.2	0.6	2.6	1	1	1	2	2	2	0	Membrane-associating	domain
CarboxypepD_reg	PF13620.6	gi|384434169|ref|YP_005643527.1|	-	0.0013	19.0	0.1	0.0025	18.0	0.1	1.5	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DUF5625	PF18539.1	gi|384434169|ref|YP_005643527.1|	-	0.029	14.7	0.2	0.11	12.8	0.2	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5625)
DUF5119	PF17145.4	gi|384434169|ref|YP_005643527.1|	-	0.063	13.2	0.2	0.08	12.9	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5119)
Adenosine_kin	PF04008.14	gi|384434170|ref|YP_005643528.1|	-	2.2e-78	261.4	0.3	2.5e-78	261.2	0.3	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
DUF309	PF03745.14	gi|384434171|ref|YP_005643529.1|	-	2.1e-13	49.7	0.0	2.8e-13	49.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
PurS	PF02700.14	gi|384434171|ref|YP_005643529.1|	-	0.051	13.7	0.0	0.12	12.5	0.0	1.7	1	0	0	1	1	1	0	Phosphoribosylformylglycinamidine	(FGAM)	synthase
Radical_SAM	PF04055.21	gi|384434172|ref|YP_005643530.1|	-	5.3e-17	62.7	0.1	1.3e-15	58.2	0.0	2.7	3	0	0	3	3	3	1	Radical	SAM	superfamily
zf-ribbon_3	PF13248.6	gi|384434172|ref|YP_005643530.1|	-	0.017	14.5	6.4	0.089	12.2	0.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
Fer4_12	PF13353.6	gi|384434172|ref|YP_005643530.1|	-	0.04	14.2	0.0	0.097	12.9	0.0	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
DZR	PF12773.7	gi|384434172|ref|YP_005643530.1|	-	0.17	12.0	4.6	0.33	11.0	0.0	2.9	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-C2H2_11	PF16622.5	gi|384434172|ref|YP_005643530.1|	-	1.2	8.9	3.7	1.3	8.8	0.2	2.5	2	0	0	2	2	2	0	zinc-finger	C2H2-type
NOB1_Zn_bind	PF08772.11	gi|384434172|ref|YP_005643530.1|	-	2.2	8.5	5.6	1.5	9.0	0.6	2.8	2	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
TF_Zn_Ribbon	PF08271.12	gi|384434172|ref|YP_005643530.1|	-	2.4	7.7	9.5	0.18	11.4	2.2	2.7	3	1	0	3	3	3	0	TFIIB	zinc-binding
ECH_1	PF00378.20	gi|384434173|ref|YP_005643531.1|	-	4.2e-57	193.3	0.0	4.6e-57	193.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|384434173|ref|YP_005643531.1|	-	1.6e-34	119.9	0.0	1.9e-34	119.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
UbiA	PF01040.18	gi|384434175|ref|YP_005643533.1|	-	4.5e-47	160.5	24.7	6e-47	160.1	24.7	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
G0-G1_switch_2	PF15103.6	gi|384434175|ref|YP_005643533.1|	-	0.3	11.5	2.2	0.44	11.0	0.2	2.1	2	0	0	2	2	2	0	G0/G1	switch	protein	2
Homoserine_dh	PF00742.19	gi|384434176|ref|YP_005643534.1|	-	1.9e-49	167.9	0.0	2.6e-49	167.4	0.0	1.2	1	0	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.16	gi|384434176|ref|YP_005643534.1|	-	1.3e-11	45.1	0.0	2.4e-11	44.3	0.0	1.5	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
LeuA_dimer	PF08502.10	gi|384434176|ref|YP_005643534.1|	-	0.044	13.7	0.1	1	9.3	0.0	2.5	3	0	0	3	3	3	0	LeuA	allosteric	(dimerisation)	domain
SLH	PF00395.20	gi|384434176|ref|YP_005643534.1|	-	0.14	12.2	0.0	0.98	9.5	0.0	2.6	2	0	0	2	2	2	0	S-layer	homology	domain
B3_4	PF03483.17	gi|384434177|ref|YP_005643535.1|	-	2.1e-33	115.4	0.0	4e-33	114.5	0.0	1.4	2	0	0	2	2	2	1	B3/4	domain
BING4CT	PF08149.11	gi|384434177|ref|YP_005643535.1|	-	0.091	12.6	0.0	0.23	11.3	0.0	1.7	1	1	0	1	1	1	0	BING4CT	(NUC141)	domain
NikR_C	PF08753.11	gi|384434178|ref|YP_005643536.1|	-	6.4e-23	80.7	1.1	8.9e-23	80.3	1.1	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|384434178|ref|YP_005643536.1|	-	8.3e-05	22.4	0.0	0.00016	21.5	0.0	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF2811	PF10929.8	gi|384434178|ref|YP_005643536.1|	-	0.0038	17.5	0.0	0.0054	17.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2811)
IFNGR1	PF07140.11	gi|384434178|ref|YP_005643536.1|	-	0.082	13.0	0.1	0.12	12.5	0.1	1.3	1	0	0	1	1	1	0	Interferon	gamma	receptor	(IFNGR1)
DUF1871	PF08958.10	gi|384434178|ref|YP_005643536.1|	-	0.14	12.5	0.0	0.21	11.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1871)
DUF2863	PF11062.8	gi|384434178|ref|YP_005643536.1|	-	0.16	10.4	0.1	0.19	10.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2863)
PmbA_TldD	PF01523.16	gi|384434179|ref|YP_005643537.1|	-	2.7e-39	135.7	0.4	3.6e-39	135.3	0.4	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|384434180|ref|YP_005643538.1|	-	2.7e-35	122.6	0.3	3.9e-35	122.0	0.3	1.2	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
BPL_LplA_LipB	PF03099.19	gi|384434181|ref|YP_005643539.1|	-	1.2e-13	51.1	0.0	1.6e-13	50.7	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
DUF3781	PF12636.7	gi|384434181|ref|YP_005643539.1|	-	0.16	11.8	2.2	0.26	11.2	0.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3781)
Sua5_yciO_yrdC	PF01300.18	gi|384434182|ref|YP_005643540.1|	-	4.6e-56	189.1	0.1	6.3e-56	188.7	0.1	1.2	1	0	0	1	1	1	1	Telomere	recombination
SUA5	PF03481.13	gi|384434182|ref|YP_005643540.1|	-	2e-26	93.2	0.0	3e-26	92.6	0.0	1.3	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
Oxidored_q6	PF01058.22	gi|384434183|ref|YP_005643541.1|	-	4.2e-20	71.9	0.0	5.6e-20	71.5	0.0	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
DUF4147	PF13660.6	gi|384434184|ref|YP_005643542.1|	-	7.7e-54	182.7	0.0	1.1e-53	182.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|384434184|ref|YP_005643542.1|	-	1.8e-25	89.2	0.1	4.7e-25	87.9	0.1	1.7	2	0	0	2	2	2	1	MOFRL	family
DUF2250	PF10007.9	gi|384434185|ref|YP_005643543.1|	-	0.0004	20.4	0.1	0.001	19.2	0.1	1.7	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Exotox-A_cataly	PF09009.10	gi|384434185|ref|YP_005643543.1|	-	0.026	14.3	0.0	0.032	14.0	0.0	1.1	1	0	0	1	1	1	0	Exotoxin	A	catalytic
DUF3830	PF12903.7	gi|384434185|ref|YP_005643543.1|	-	0.05	13.3	0.0	0.075	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3830)
Fe_dep_repr_C	PF02742.15	gi|384434186|ref|YP_005643544.1|	-	2.8e-27	94.6	1.1	6.7e-27	93.4	0.3	2.0	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|384434186|ref|YP_005643544.1|	-	1.2e-11	44.7	0.5	4.2e-11	42.9	0.1	2.2	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|384434186|ref|YP_005643544.1|	-	7.8e-08	32.1	0.0	2.6e-07	30.4	0.0	1.9	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|384434186|ref|YP_005643544.1|	-	1e-07	31.7	0.0	2e-07	30.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|384434186|ref|YP_005643544.1|	-	1.2e-06	28.4	0.0	3.1e-06	27.0	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|384434186|ref|YP_005643544.1|	-	4.9e-06	26.0	0.1	7.8e-05	22.2	0.1	2.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.21	gi|384434186|ref|YP_005643544.1|	-	1.2e-05	24.9	0.1	0.00029	20.4	0.0	2.9	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|384434186|ref|YP_005643544.1|	-	2.3e-05	24.8	0.0	5.4e-05	23.6	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384434186|ref|YP_005643544.1|	-	2.6e-05	24.0	0.1	5.9e-05	22.9	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|384434186|ref|YP_005643544.1|	-	4.3e-05	23.2	0.0	9.4e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_45	PF14947.6	gi|384434186|ref|YP_005643544.1|	-	5.2e-05	23.1	0.3	0.00014	21.8	0.2	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix
DUF4423	PF14394.6	gi|384434186|ref|YP_005643544.1|	-	0.00011	22.0	0.5	0.00019	21.2	0.1	1.6	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4423)
FeoA	PF04023.14	gi|384434186|ref|YP_005643544.1|	-	0.00025	21.2	1.5	0.00098	19.3	0.6	2.3	2	1	0	2	2	2	1	FeoA	domain
DUF2250	PF10007.9	gi|384434186|ref|YP_005643544.1|	-	0.0004	20.4	0.4	0.00081	19.5	0.4	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_41	PF14502.6	gi|384434186|ref|YP_005643544.1|	-	0.00044	19.9	0.1	0.0016	18.0	0.0	2.0	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|384434186|ref|YP_005643544.1|	-	0.0011	18.9	0.1	0.0031	17.5	0.0	1.8	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Ribosomal_S19e	PF01090.19	gi|384434186|ref|YP_005643544.1|	-	0.0013	18.4	0.1	0.0021	17.8	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S19e
DUF505	PF04458.12	gi|384434186|ref|YP_005643544.1|	-	0.0022	16.5	0.1	0.0032	15.9	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
Phage_rep_org_N	PF09681.10	gi|384434186|ref|YP_005643544.1|	-	0.0023	17.8	0.1	0.0041	17.0	0.1	1.4	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
PadR	PF03551.14	gi|384434186|ref|YP_005643544.1|	-	0.0028	17.6	0.3	0.012	15.5	0.1	2.4	2	1	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_36	PF13730.6	gi|384434186|ref|YP_005643544.1|	-	0.004	17.1	0.0	0.0079	16.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|384434186|ref|YP_005643544.1|	-	0.0044	17.1	0.0	0.01	15.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|384434186|ref|YP_005643544.1|	-	0.006	16.7	0.0	0.011	15.9	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_1	PF00126.27	gi|384434186|ref|YP_005643544.1|	-	0.0067	16.3	0.1	0.026	14.5	0.0	2.0	2	1	0	2	2	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
AAA_assoc_C	PF09821.9	gi|384434186|ref|YP_005643544.1|	-	0.0094	16.5	0.1	0.017	15.6	0.1	1.5	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
HTH_34	PF13601.6	gi|384434186|ref|YP_005643544.1|	-	0.0098	16.0	0.1	0.024	14.8	0.1	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
Mrr_N	PF14338.6	gi|384434186|ref|YP_005643544.1|	-	0.01	15.9	0.1	0.027	14.6	0.1	1.7	1	1	0	1	1	1	0	Mrr	N-terminal	domain
FeoC	PF09012.10	gi|384434186|ref|YP_005643544.1|	-	0.016	15.3	0.0	0.028	14.5	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_28	PF13518.6	gi|384434186|ref|YP_005643544.1|	-	0.018	15.1	0.0	0.043	13.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|384434186|ref|YP_005643544.1|	-	0.02	15.2	0.1	0.072	13.4	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_11	PF08279.12	gi|384434186|ref|YP_005643544.1|	-	0.028	14.4	0.1	0.17	11.9	0.0	2.4	2	1	0	2	2	1	0	HTH	domain
HrcA_DNA-bdg	PF03444.15	gi|384434186|ref|YP_005643544.1|	-	0.033	13.8	0.2	0.082	12.6	0.1	1.8	2	0	0	2	2	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
DUF4364	PF14277.6	gi|384434186|ref|YP_005643544.1|	-	0.052	13.3	0.1	0.16	11.7	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
HTH_IclR	PF09339.10	gi|384434186|ref|YP_005643544.1|	-	0.067	13.0	0.1	0.18	11.6	0.0	1.8	2	0	0	2	2	1	0	IclR	helix-turn-helix	domain
HxlR	PF01638.17	gi|384434186|ref|YP_005643544.1|	-	0.076	12.9	0.2	0.24	11.3	0.1	1.9	2	1	0	2	2	1	0	HxlR-like	helix-turn-helix
TrkA_C	PF02080.21	gi|384434186|ref|YP_005643544.1|	-	2.6	7.9	6.0	1.3	9.0	0.1	2.7	3	0	0	3	3	3	0	TrkA-C	domain
ICEA	PF05315.11	gi|384434187|ref|YP_005643545.1|	-	0.11	12.0	0.1	0.12	11.8	0.1	1.0	1	0	0	1	1	1	0	ICEA	Protein
DUF456	PF04306.13	gi|384434188|ref|YP_005643546.1|	-	0.00026	21.3	2.9	0.00037	20.8	2.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
Bacteriocin_IIc	PF10439.9	gi|384434188|ref|YP_005643546.1|	-	0.0029	17.7	6.9	0.0053	16.9	6.9	1.4	1	0	0	1	1	1	1	Bacteriocin	class	II	with	double-glycine	leader	peptide
Gly-zipper_Omp	PF13488.6	gi|384434188|ref|YP_005643546.1|	-	0.0039	17.2	10.4	0.0059	16.6	10.4	1.3	1	0	0	1	1	1	1	Glycine	zipper
Rick_17kDa_Anti	PF05433.15	gi|384434188|ref|YP_005643546.1|	-	0.048	13.5	4.1	0.048	13.5	4.1	2.1	1	1	1	2	2	2	0	Glycine	zipper	2TM	domain
BMC	PF00936.19	gi|384434188|ref|YP_005643546.1|	-	0.12	12.3	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	BMC	domain
BTRD1	PF17660.1	gi|384434188|ref|YP_005643546.1|	-	0.15	11.9	1.5	0.24	11.3	0.2	1.8	2	0	0	2	2	2	0	Bacterial	tandem	repeat	domain	1
PT-VENN	PF04829.13	gi|384434188|ref|YP_005643546.1|	-	2.3	8.4	5.6	4.1	7.5	5.6	1.4	1	0	0	1	1	1	0	Pre-toxin	domain	with	VENN	motif
Gly-zipper_YMGG	PF13441.6	gi|384434188|ref|YP_005643546.1|	-	9.5	6.1	15.3	30	4.5	15.3	1.7	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
Atthog	PF18800.1	gi|384434189|ref|YP_005643547.1|	-	0.055	13.4	5.1	0.057	13.3	3.7	1.7	1	1	1	2	2	2	0	Attenuator	of	Hedgehog
S_4TM	PF18159.1	gi|384434189|ref|YP_005643547.1|	-	4.5	6.5	4.8	1.5	8.0	0.6	1.8	2	0	0	2	2	2	0	SMODS-associating	4TM	effector	domain
Methyltransf_11	PF08241.12	gi|384434190|ref|YP_005643548.1|	-	4.2e-15	56.2	0.0	6.7e-15	55.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384434190|ref|YP_005643548.1|	-	2.1e-11	44.4	0.0	3.4e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384434190|ref|YP_005643548.1|	-	2.6e-08	33.8	0.0	3.7e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384434190|ref|YP_005643548.1|	-	1.1e-06	29.3	0.0	1.8e-06	28.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384434190|ref|YP_005643548.1|	-	0.00016	21.5	0.0	0.00023	21.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384434190|ref|YP_005643548.1|	-	0.0012	18.2	0.0	0.0018	17.6	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|384434190|ref|YP_005643548.1|	-	0.089	12.6	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
CBS	PF00571.28	gi|384434191|ref|YP_005643549.1|	-	4.5e-23	81.4	6.6	3.8e-08	33.6	0.0	3.9	4	0	0	4	4	4	3	CBS	domain
MobB	PF03205.14	gi|384434192|ref|YP_005643550.1|	-	1e-20	74.0	0.4	1.4e-20	73.5	0.4	1.2	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATPase_2	PF01637.18	gi|384434192|ref|YP_005643550.1|	-	0.0022	18.0	2.3	0.0031	17.5	2.3	1.2	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA	PF00004.29	gi|384434192|ref|YP_005643550.1|	-	0.011	16.1	0.5	0.032	14.6	0.5	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2540	PF10802.8	gi|384434192|ref|YP_005643550.1|	-	0.019	15.0	0.5	0.019	15.0	0.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2540)
AAA_7	PF12775.7	gi|384434192|ref|YP_005643550.1|	-	0.025	14.1	0.0	0.046	13.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_16	PF13191.6	gi|384434192|ref|YP_005643550.1|	-	0.04	14.3	0.1	0.056	13.8	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.9	gi|384434192|ref|YP_005643550.1|	-	0.059	12.3	0.2	0.12	11.3	0.0	1.5	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
MoeA_N	PF03453.17	gi|384434193|ref|YP_005643551.1|	-	2.2e-32	112.0	0.0	3.5e-32	111.3	0.0	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|384434193|ref|YP_005643551.1|	-	4e-19	68.7	0.1	6.5e-19	68.0	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|384434193|ref|YP_005643551.1|	-	0.0066	16.6	0.1	0.02	15.0	0.0	1.9	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
NTP_transf_3	PF12804.7	gi|384434194|ref|YP_005643552.1|	-	5e-20	72.5	0.0	6.1e-20	72.2	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Diphthami_syn_2	PF01902.17	gi|384434196|ref|YP_005643554.1|	-	1.9e-57	194.3	0.0	2e-57	194.2	0.0	1.0	1	0	0	1	1	1	1	Diphthamide	synthase
QueC	PF06508.13	gi|384434196|ref|YP_005643554.1|	-	0.0045	16.5	0.0	0.022	14.3	0.0	2.0	1	1	1	2	2	2	1	Queuosine	biosynthesis	protein	QueC
DAHP_snth_FXD	PF18152.1	gi|384434196|ref|YP_005643554.1|	-	0.068	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	DAHP	synthase	ferredoxin-like	domain
Glyoxalase_4	PF13669.6	gi|384434196|ref|YP_005643554.1|	-	0.14	12.4	0.0	2.7	8.3	0.0	2.5	2	0	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Amidohydro_1	PF01979.20	gi|384434197|ref|YP_005643555.1|	-	3.1e-60	204.3	0.0	3.6e-60	204.1	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|384434197|ref|YP_005643555.1|	-	2.2e-14	53.8	0.0	4.7e-12	46.1	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|384434197|ref|YP_005643555.1|	-	0.00061	19.2	0.0	0.0012	18.3	0.0	1.4	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Glycos_transf_2	PF00535.26	gi|384434198|ref|YP_005643556.1|	-	5.1e-10	39.4	0.3	7.5e-10	38.9	0.3	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|384434198|ref|YP_005643556.1|	-	0.00024	21.1	0.2	0.086	12.7	0.1	2.2	2	0	0	2	2	2	2	Glycosyl	transferase	family	group	2
Glyco_tranf_2_2	PF10111.9	gi|384434198|ref|YP_005643556.1|	-	0.00041	19.9	0.4	0.0035	16.8	0.3	2.1	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.6	gi|384434198|ref|YP_005643556.1|	-	0.00066	19.6	0.1	0.0047	16.8	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Virulence_RhuM	PF13310.6	gi|384434198|ref|YP_005643556.1|	-	0.0023	17.2	0.2	0.0032	16.7	0.2	1.2	1	0	0	1	1	1	1	Virulence	protein	RhuM	family
Glyco_transf_21	PF13506.6	gi|384434198|ref|YP_005643556.1|	-	0.0084	15.6	0.1	0.02	14.4	0.1	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.6	gi|384434198|ref|YP_005643556.1|	-	0.056	14.0	0.1	0.1	13.1	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glycos_transf_1	PF00534.20	gi|384434199|ref|YP_005643557.1|	-	2.6e-20	72.6	0.8	5e-20	71.7	0.8	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384434199|ref|YP_005643557.1|	-	9.2e-07	29.4	0.0	1.6e-06	28.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|384434199|ref|YP_005643557.1|	-	0.0011	19.0	0.0	0.0025	17.8	0.1	1.7	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|384434199|ref|YP_005643557.1|	-	0.018	15.4	0.0	0.037	14.4	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
DUF3206	PF11472.8	gi|384434199|ref|YP_005643557.1|	-	0.052	13.5	0.2	0.42	10.6	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3206)
RisS_PPD	PF16524.5	gi|384434199|ref|YP_005643557.1|	-	0.21	11.8	0.2	0.75	10.1	0.2	1.9	2	0	0	2	2	2	0	Periplasmic	domain	of	Sensor	histidine	kinase	RisS
GXGXG	PF01493.19	gi|384434200|ref|YP_005643558.1|	-	1.2e-23	83.7	7.6	2.6e-23	82.6	7.6	1.4	1	0	0	1	1	1	1	GXGXG	motif
GATase_6	PF13522.6	gi|384434200|ref|YP_005643558.1|	-	4.4e-08	33.4	0.0	6.4e-07	29.6	0.0	2.2	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.21	gi|384434200|ref|YP_005643558.1|	-	1.7e-07	30.3	0.1	1.5e-05	23.9	0.0	2.5	2	1	0	2	2	2	1	Glutamine	amidotransferases	class-II
GATase_7	PF13537.6	gi|384434200|ref|YP_005643558.1|	-	0.044	13.7	0.0	0.48	10.3	0.0	2.2	1	1	0	1	1	1	0	Glutamine	amidotransferase	domain
RRM_1	PF00076.22	gi|384434200|ref|YP_005643558.1|	-	0.098	12.5	0.0	0.3	10.9	0.0	1.9	1	0	0	1	1	1	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
SHOCT	PF09851.9	gi|384434200|ref|YP_005643558.1|	-	0.25	11.2	5.0	0.61	9.9	0.1	2.7	2	0	0	2	2	2	0	Short	C-terminal	domain
Glu_synthase	PF01645.17	gi|384434201|ref|YP_005643559.1|	-	1.6e-100	336.9	0.6	1e-96	324.3	0.2	2.2	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|384434201|ref|YP_005643559.1|	-	2.2e-18	66.8	1.4	1.8e-06	27.7	0.0	3.3	3	0	0	3	3	3	3	Glutamate	synthase	central	domain
FMN_dh	PF01070.18	gi|384434201|ref|YP_005643559.1|	-	2.3e-06	26.9	10.3	3.3e-05	23.1	5.1	2.9	3	0	0	3	3	3	2	FMN-dependent	dehydrogenase
DHO_dh	PF01180.21	gi|384434201|ref|YP_005643559.1|	-	0.012	14.8	0.9	0.024	13.9	0.9	1.5	1	1	0	1	1	1	0	Dihydroorotate	dehydrogenase
NanE	PF04131.14	gi|384434201|ref|YP_005643559.1|	-	0.014	14.6	0.2	0.13	11.5	0.1	2.3	2	0	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
IMPDH	PF00478.25	gi|384434201|ref|YP_005643559.1|	-	0.03	13.3	7.5	0.019	14.0	4.5	2.0	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
GDPD_2	PF13653.6	gi|384434201|ref|YP_005643559.1|	-	0.12	12.9	0.4	6.4	7.4	0.0	3.3	4	0	0	4	4	4	0	Glycerophosphoryl	diester	phosphodiesterase	family
NMO	PF03060.15	gi|384434201|ref|YP_005643559.1|	-	0.16	11.4	4.0	0.31	10.4	4.0	1.5	1	0	0	1	1	1	0	Nitronate	monooxygenase
Fibroin_P25	PF07294.11	gi|384434201|ref|YP_005643559.1|	-	0.16	12.0	0.0	0.26	11.3	0.0	1.2	1	0	0	1	1	1	0	Fibroin	P25
Elf4	PF07011.11	gi|384434201|ref|YP_005643559.1|	-	0.16	11.9	0.0	0.38	10.7	0.0	1.5	1	0	0	1	1	1	0	Early	Flowering	4	domain
MacB_PCD	PF12704.7	gi|384434202|ref|YP_005643560.1|	-	2.1e-17	64.1	9.2	2.1e-17	64.1	9.2	2.3	2	1	1	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|384434202|ref|YP_005643560.1|	-	2.7e-12	47.0	10.2	2.7e-12	47.0	10.2	4.2	3	1	0	3	3	3	1	FtsX-like	permease	family
NPCBM_assoc	PF10633.9	gi|384434203|ref|YP_005643561.1|	-	4.4e-09	36.5	3.9	0.06	13.6	0.1	6.6	7	0	0	7	7	7	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|384434203|ref|YP_005643561.1|	-	1.8e-06	28.1	31.0	0.00087	19.5	0.8	7.6	5	2	2	8	8	8	3	CARDB
Transglut_C	PF00927.22	gi|384434203|ref|YP_005643561.1|	-	0.0022	18.1	10.0	0.13	12.4	0.1	4.9	3	2	2	5	5	5	2	Transglutaminase	family,	C-terminal	ig	like	domain
DUF11	PF01345.18	gi|384434203|ref|YP_005643561.1|	-	0.011	16.0	1.9	0.011	16.0	1.9	6.1	6	1	0	7	7	7	0	Domain	of	unknown	function	DUF11
Coatamer_beta_C	PF07718.12	gi|384434203|ref|YP_005643561.1|	-	0.061	13.2	9.6	0.11	12.4	0.6	3.9	4	0	0	4	4	4	0	Coatomer	beta	C-terminal	region
TRAP_beta	PF05753.14	gi|384434203|ref|YP_005643561.1|	-	0.24	10.8	15.8	9.9	5.5	0.2	5.6	4	1	1	5	5	5	0	Translocon-associated	protein	beta	(TRAPB)
ABC_tran	PF00005.27	gi|384434204|ref|YP_005643562.1|	-	1e-32	113.5	0.0	1.5e-32	113.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384434204|ref|YP_005643562.1|	-	5.5e-13	49.4	0.0	4.7e-06	26.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384434204|ref|YP_005643562.1|	-	2.7e-09	36.8	0.1	8.8e-06	25.3	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|384434204|ref|YP_005643562.1|	-	1.3e-05	25.1	0.1	0.068	12.9	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384434204|ref|YP_005643562.1|	-	2.4e-05	24.0	0.1	4.6e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|384434204|ref|YP_005643562.1|	-	4.1e-05	23.9	0.1	0.00045	20.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384434204|ref|YP_005643562.1|	-	8.1e-05	23.0	0.1	0.051	14.0	0.1	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|384434204|ref|YP_005643562.1|	-	0.0007	20.1	0.4	0.0025	18.4	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|384434204|ref|YP_005643562.1|	-	0.0023	18.4	0.3	0.0039	17.6	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_13	PF13166.6	gi|384434204|ref|YP_005643562.1|	-	0.0045	15.7	0.0	0.67	8.5	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
Rad17	PF03215.15	gi|384434204|ref|YP_005643562.1|	-	0.0047	16.9	0.0	0.01	15.8	0.0	1.6	2	0	0	2	2	2	1	Rad17	P-loop	domain
AAA_18	PF13238.6	gi|384434204|ref|YP_005643562.1|	-	0.0052	17.3	1.5	0.27	11.8	0.3	2.8	2	1	1	3	3	3	1	AAA	domain
AAA_25	PF13481.6	gi|384434204|ref|YP_005643562.1|	-	0.0054	16.3	0.0	0.04	13.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|384434204|ref|YP_005643562.1|	-	0.0064	16.4	0.1	0.022	14.6	0.0	1.9	2	0	0	2	2	2	1	RsgA	GTPase
T2SSE	PF00437.20	gi|384434204|ref|YP_005643562.1|	-	0.0079	15.3	0.1	0.013	14.5	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
cobW	PF02492.19	gi|384434204|ref|YP_005643562.1|	-	0.014	15.0	0.0	0.04	13.5	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
G-alpha	PF00503.20	gi|384434204|ref|YP_005643562.1|	-	0.03	13.5	0.0	0.035	13.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
RNA12	PF10443.9	gi|384434204|ref|YP_005643562.1|	-	0.033	12.9	0.0	0.059	12.1	0.0	1.4	2	0	0	2	2	2	0	RNA12	protein
NACHT	PF05729.12	gi|384434204|ref|YP_005643562.1|	-	0.054	13.4	0.9	0.3	11.0	0.2	2.3	1	1	1	2	2	2	0	NACHT	domain
SRPRB	PF09439.10	gi|384434204|ref|YP_005643562.1|	-	0.06	12.8	0.5	0.45	9.9	0.0	2.2	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
ATPase_2	PF01637.18	gi|384434204|ref|YP_005643562.1|	-	0.061	13.2	0.2	0.28	11.1	0.0	1.9	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
IstB_IS21	PF01695.17	gi|384434204|ref|YP_005643562.1|	-	0.085	12.6	0.3	0.72	9.6	0.0	2.3	2	1	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|384434204|ref|YP_005643562.1|	-	0.089	12.5	0.1	0.23	11.2	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|384434204|ref|YP_005643562.1|	-	0.1	12.3	0.1	0.31	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|384434204|ref|YP_005643562.1|	-	0.13	12.4	1.3	0.59	10.3	0.2	2.3	2	1	1	3	3	3	0	AAA	domain
PhoH	PF02562.16	gi|384434204|ref|YP_005643562.1|	-	0.18	11.2	1.4	2.7	7.4	0.1	2.8	2	1	1	3	3	3	0	PhoH-like	protein
Peptidase_M54	PF07998.11	gi|384434205|ref|YP_005643563.1|	-	1.4e-64	217.7	3.2	1.6e-64	217.5	3.2	1.0	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M43	PF05572.13	gi|384434205|ref|YP_005643563.1|	-	0.00029	20.8	0.2	0.00054	19.9	0.2	1.4	1	0	0	1	1	1	1	Pregnancy-associated	plasma	protein-A
Peptidase_M10	PF00413.24	gi|384434205|ref|YP_005643563.1|	-	0.00033	20.5	0.0	0.00033	20.5	0.0	1.2	1	0	0	1	1	1	1	Matrixin
DUF4953	PF16313.5	gi|384434205|ref|YP_005643563.1|	-	0.0017	17.7	0.0	0.0022	17.3	0.0	1.2	1	0	0	1	1	1	1	Met-zincin
Reprolysin_4	PF13583.6	gi|384434205|ref|YP_005643563.1|	-	0.014	15.0	0.1	0.02	14.5	0.1	1.2	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.6	gi|384434205|ref|YP_005643563.1|	-	0.032	14.4	0.1	0.051	13.7	0.1	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12
Reprolysin_3	PF13582.6	gi|384434205|ref|YP_005643563.1|	-	0.036	14.6	0.0	0.049	14.2	0.0	1.4	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Metallopep	PF12044.8	gi|384434205|ref|YP_005643563.1|	-	0.05	12.2	0.1	0.061	11.9	0.1	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Peptidase_M66	PF10462.9	gi|384434205|ref|YP_005643563.1|	-	0.067	12.1	0.0	0.088	11.7	0.0	1.2	1	0	0	1	1	1	0	Peptidase	M66
Peptidase_M57	PF12388.8	gi|384434205|ref|YP_005643563.1|	-	0.14	11.8	0.1	0.22	11.1	0.1	1.3	1	0	0	1	1	1	0	Dual-action	HEIGH	metallo-peptidase
Archease	PF01951.16	gi|384434206|ref|YP_005643564.1|	-	1.1e-44	152.0	0.3	1.3e-44	151.8	0.3	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Cytidylate_kin2	PF13189.6	gi|384434210|ref|YP_005643568.1|	-	3e-19	69.8	1.6	2.5e-17	63.6	1.6	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|384434210|ref|YP_005643568.1|	-	1.7e-14	54.4	0.0	2.8e-14	53.8	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|384434210|ref|YP_005643568.1|	-	2.8e-12	46.8	0.6	2.2e-07	30.8	0.0	2.2	1	1	1	2	2	2	2	Cytidylate	kinase
AAA_17	PF13207.6	gi|384434210|ref|YP_005643568.1|	-	2.2e-11	44.3	0.0	3.1e-11	43.9	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384434210|ref|YP_005643568.1|	-	2.3e-05	24.8	0.0	4.9e-05	23.8	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|384434210|ref|YP_005643568.1|	-	2.8e-05	24.3	0.0	7.7e-05	22.9	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|384434210|ref|YP_005643568.1|	-	5.1e-05	23.4	0.0	0.00013	22.0	0.0	1.7	1	1	0	1	1	1	1	Adenylate	kinase
SKI	PF01202.22	gi|384434210|ref|YP_005643568.1|	-	0.00014	22.0	0.2	0.00039	20.6	0.2	1.7	1	1	0	1	1	1	1	Shikimate	kinase
AAA_11	PF13086.6	gi|384434210|ref|YP_005643568.1|	-	0.00024	21.0	0.1	0.00088	19.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|384434210|ref|YP_005643568.1|	-	0.0024	17.1	0.1	0.0049	16.1	0.1	1.5	1	1	0	1	1	1	1	TIP49	P-loop	domain
DUF2075	PF09848.9	gi|384434210|ref|YP_005643568.1|	-	0.0024	17.2	0.0	0.0028	16.9	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_28	PF13521.6	gi|384434210|ref|YP_005643568.1|	-	0.0029	17.9	0.0	0.0035	17.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384434210|ref|YP_005643568.1|	-	0.0029	18.0	0.0	0.0057	17.0	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
CoaE	PF01121.20	gi|384434210|ref|YP_005643568.1|	-	0.004	16.9	0.2	1.4	8.6	0.0	2.1	1	1	1	2	2	2	2	Dephospho-CoA	kinase
KTI12	PF08433.10	gi|384434210|ref|YP_005643568.1|	-	0.0053	16.2	0.0	0.024	14.1	0.0	1.9	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|384434210|ref|YP_005643568.1|	-	0.0055	17.0	0.0	0.0085	16.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|384434210|ref|YP_005643568.1|	-	0.0056	16.4	0.0	0.0087	15.8	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Zot	PF05707.12	gi|384434210|ref|YP_005643568.1|	-	0.0057	16.3	0.0	0.0091	15.7	0.0	1.3	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
IPT	PF01745.16	gi|384434210|ref|YP_005643568.1|	-	0.0072	15.7	0.2	0.036	13.5	0.0	2.1	1	1	2	3	3	3	1	Isopentenyl	transferase
RNA_helicase	PF00910.22	gi|384434210|ref|YP_005643568.1|	-	0.0073	16.7	0.0	0.016	15.6	0.0	1.7	1	0	0	1	1	1	1	RNA	helicase
Hydin_ADK	PF17213.3	gi|384434210|ref|YP_005643568.1|	-	0.0074	16.6	0.1	0.012	16.0	0.1	1.3	1	0	0	1	1	1	1	Hydin	Adenylate	kinase-like	domain
NTPase_1	PF03266.15	gi|384434210|ref|YP_005643568.1|	-	0.0086	16.0	0.0	0.013	15.5	0.0	1.3	1	0	0	1	1	1	1	NTPase
dNK	PF01712.19	gi|384434210|ref|YP_005643568.1|	-	0.015	15.1	2.9	1.4	8.8	0.1	2.2	2	0	0	2	2	2	0	Deoxynucleoside	kinase
DUF2532	PF10811.8	gi|384434210|ref|YP_005643568.1|	-	0.02	15.0	0.6	0.07	13.2	0.7	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2532)
Zeta_toxin	PF06414.12	gi|384434210|ref|YP_005643568.1|	-	0.02	14.2	0.0	0.04	13.2	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
Rad17	PF03215.15	gi|384434210|ref|YP_005643568.1|	-	0.021	14.8	0.2	0.044	13.7	0.0	1.6	2	0	0	2	2	1	0	Rad17	P-loop	domain
CbiA	PF01656.23	gi|384434210|ref|YP_005643568.1|	-	0.043	13.9	1.1	0.23	11.5	0.0	2.4	3	1	0	3	3	3	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NACHT	PF05729.12	gi|384434210|ref|YP_005643568.1|	-	0.05	13.5	0.0	0.098	12.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
PRK	PF00485.18	gi|384434210|ref|YP_005643568.1|	-	0.052	13.3	1.2	0.31	10.8	0.1	2.2	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
NB-ARC	PF00931.22	gi|384434210|ref|YP_005643568.1|	-	0.068	12.4	0.4	0.49	9.5	0.4	2.1	1	1	0	1	1	1	0	NB-ARC	domain
T2SSE	PF00437.20	gi|384434210|ref|YP_005643568.1|	-	0.072	12.1	0.1	0.24	10.4	0.1	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DnaB_C	PF03796.15	gi|384434210|ref|YP_005643568.1|	-	0.091	12.1	0.6	0.45	9.8	0.0	2.0	2	1	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|384434210|ref|YP_005643568.1|	-	0.11	12.0	0.0	0.21	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|384434210|ref|YP_005643568.1|	-	0.12	12.3	0.0	0.23	11.3	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Trans_coact	PF16805.5	gi|384434210|ref|YP_005643568.1|	-	0.12	12.5	0.6	5.3	7.2	0.0	2.8	3	0	0	3	3	2	0	Phage	late-transcription	coactivator
ParA	PF10609.9	gi|384434210|ref|YP_005643568.1|	-	0.13	11.7	0.0	0.16	11.3	0.0	1.2	1	0	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
AAA_5	PF07728.14	gi|384434210|ref|YP_005643568.1|	-	0.15	12.0	0.0	0.28	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|384434210|ref|YP_005643568.1|	-	0.19	11.4	0.1	1.8	8.2	0.1	2.0	1	1	1	2	2	2	0	AAA	domain
Ribosomal_L34e	PF01199.18	gi|384434211|ref|YP_005643569.1|	-	5.7e-20	71.4	1.1	6.4e-20	71.3	1.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L34e
DUF4428	PF14471.6	gi|384434211|ref|YP_005643569.1|	-	0.0056	16.6	0.5	0.85	9.6	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4428)
zf-P11	PF03854.14	gi|384434211|ref|YP_005643569.1|	-	0.014	15.0	1.0	3.7	7.3	0.1	2.2	2	0	0	2	2	2	0	P-11	zinc	finger
PHD	PF00628.29	gi|384434211|ref|YP_005643569.1|	-	0.019	14.8	0.4	0.05	13.5	0.4	1.6	1	1	0	1	1	1	0	PHD-finger
Gin	PF10764.9	gi|384434211|ref|YP_005643569.1|	-	0.024	14.6	0.1	1.1	9.2	0.0	2.2	2	0	0	2	2	2	0	Inhibitor	of	sigma-G	Gin
zf-C2HC5	PF06221.13	gi|384434211|ref|YP_005643569.1|	-	0.039	13.9	0.2	1.3	9.1	0.1	2.1	2	0	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
NinF	PF05810.12	gi|384434211|ref|YP_005643569.1|	-	0.12	12.2	0.0	1.6	8.6	0.0	2.0	2	0	0	2	2	2	0	NinF	protein
RGS	PF00615.19	gi|384434212|ref|YP_005643570.1|	-	0.04	14.2	1.6	0.083	13.2	1.6	1.5	1	0	0	1	1	1	0	Regulator	of	G	protein	signaling	domain
DDE_Tnp_1_6	PF13751.6	gi|384434212|ref|YP_005643570.1|	-	0.11	12.7	0.1	0.14	12.4	0.1	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain
Sm_multidrug_ex	PF06695.11	gi|384434212|ref|YP_005643570.1|	-	3.9	8.1	6.1	0.94	10.1	2.0	1.9	1	1	1	2	2	2	0	Putative	small	multi-drug	export	protein
AAA_17	PF13207.6	gi|384434213|ref|YP_005643571.1|	-	7.7e-32	110.6	0.0	1e-31	110.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|384434213|ref|YP_005643571.1|	-	1.9e-07	31.7	0.0	2.7e-07	31.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|384434213|ref|YP_005643571.1|	-	8.2e-05	22.4	0.2	0.092	12.4	0.0	2.3	2	1	0	2	2	2	2	Thymidylate	kinase
AAA_16	PF13191.6	gi|384434213|ref|YP_005643571.1|	-	0.0025	18.2	0.0	0.0036	17.7	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|384434213|ref|YP_005643571.1|	-	0.0044	17.0	0.1	0.0074	16.2	0.1	1.5	1	0	0	1	1	1	1	NTPase
AAA_30	PF13604.6	gi|384434213|ref|YP_005643571.1|	-	0.007	16.1	0.7	0.015	15.0	0.1	1.8	2	1	0	2	2	2	1	AAA	domain
ATP_bind_1	PF03029.17	gi|384434213|ref|YP_005643571.1|	-	0.014	15.2	0.1	0.03	14.1	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.6	gi|384434213|ref|YP_005643571.1|	-	0.015	15.5	0.0	0.027	14.7	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|384434213|ref|YP_005643571.1|	-	0.017	14.6	0.0	0.024	14.1	0.0	1.2	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_22	PF13401.6	gi|384434213|ref|YP_005643571.1|	-	0.027	14.7	0.4	0.045	14.0	0.4	1.4	1	1	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|384434213|ref|YP_005643571.1|	-	0.076	12.0	0.9	0.12	11.3	0.5	1.5	1	1	1	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_19	PF13245.6	gi|384434213|ref|YP_005643571.1|	-	0.24	11.7	2.0	0.46	10.8	0.7	1.9	1	1	1	2	2	2	0	AAA	domain
SecY	PF00344.20	gi|384434214|ref|YP_005643572.1|	-	1.9e-57	194.8	27.6	2.7e-57	194.4	27.6	1.2	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|384434214|ref|YP_005643572.1|	-	3.1e-08	33.3	3.1	4.3e-08	32.9	0.6	2.7	2	0	0	2	2	2	1	Plug	domain	of	Sec61p
Ribosomal_L27A	PF00828.19	gi|384434215|ref|YP_005643573.1|	-	3.9e-17	63.1	0.9	5.4e-17	62.7	0.9	1.2	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L30	PF00327.20	gi|384434216|ref|YP_005643574.1|	-	8.4e-13	48.0	0.0	2.3e-12	46.6	0.0	1.8	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_S5	PF00333.20	gi|384434217|ref|YP_005643575.1|	-	1.2e-23	82.9	1.5	2.2e-23	82.0	1.5	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_S5_C	PF03719.15	gi|384434217|ref|YP_005643575.1|	-	3.1e-19	68.2	0.0	7.3e-19	67.0	0.0	1.6	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_L5e	PF17144.4	gi|384434218|ref|YP_005643576.1|	-	4.2e-30	104.9	2.4	1.7e-20	73.6	1.2	2.4	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18_c	PF14204.6	gi|384434218|ref|YP_005643576.1|	-	1.4e-10	41.9	0.0	2.8e-10	41.0	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
Ribosomal_L18p	PF00861.22	gi|384434218|ref|YP_005643576.1|	-	0.00017	21.9	0.1	0.00025	21.4	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_L19e	PF01280.20	gi|384434219|ref|YP_005643577.1|	-	9.3e-44	149.0	12.0	1.1e-43	148.8	12.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
MitMem_reg	PF13012.6	gi|384434219|ref|YP_005643577.1|	-	0.033	14.6	0.4	4.3	7.8	0.1	2.1	2	0	0	2	2	2	0	Maintenance	of	mitochondrial	structure	and	function
Ribosomal_L32e	PF01655.18	gi|384434220|ref|YP_005643578.1|	-	2.7e-35	121.1	0.3	3.4e-35	120.7	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
DDR_swiveling	PF18427.1	gi|384434220|ref|YP_005643578.1|	-	0.047	13.7	0.1	0.067	13.2	0.1	1.1	1	0	0	1	1	1	0	DD-reactivating	factor	swiveling	domain
Ribosomal_L6	PF00347.23	gi|384434221|ref|YP_005643579.1|	-	4.9e-27	94.4	10.5	2.6e-15	56.9	2.9	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
KH_1	PF00013.29	gi|384434221|ref|YP_005643579.1|	-	0.46	10.3	5.8	1.4	8.8	0.7	2.4	2	0	0	2	2	2	0	KH	domain
Ribosomal_S8	PF00410.19	gi|384434222|ref|YP_005643580.1|	-	1.2e-25	89.9	0.2	2e-25	89.2	0.2	1.3	1	1	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.21	gi|384434223|ref|YP_005643581.1|	-	1.4e-11	43.9	1.4	1.8e-11	43.6	1.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-HYPF	PF07503.12	gi|384434223|ref|YP_005643581.1|	-	0.013	15.2	0.5	0.55	10.1	0.0	2.1	2	0	0	2	2	2	0	HypF	finger
Ribosomal_L37ae	PF01780.19	gi|384434223|ref|YP_005643581.1|	-	0.021	14.9	0.4	0.023	14.8	0.4	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
zf-P11	PF03854.14	gi|384434223|ref|YP_005643581.1|	-	0.046	13.4	0.6	0.058	13.1	0.6	1.1	1	0	0	1	1	1	0	P-11	zinc	finger
Ribosomal_L5_C	PF00673.21	gi|384434224|ref|YP_005643582.1|	-	7.5e-27	93.3	0.0	2.3e-26	91.8	0.0	1.8	2	0	0	2	2	2	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.19	gi|384434224|ref|YP_005643582.1|	-	6.5e-21	74.4	0.0	1.2e-20	73.5	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L5
Rho_RNA_bind	PF07497.12	gi|384434224|ref|YP_005643582.1|	-	0.092	12.6	0.0	0.2	11.5	0.0	1.6	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
URO-D	PF01208.17	gi|384434224|ref|YP_005643582.1|	-	0.097	11.8	0.0	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Uroporphyrinogen	decarboxylase	(URO-D)
Ribosomal_S4e	PF00900.20	gi|384434225|ref|YP_005643583.1|	-	2.3e-22	78.7	0.2	5e-22	77.6	0.2	1.6	1	0	0	1	1	1	1	Ribosomal	family	S4e
S4	PF01479.25	gi|384434225|ref|YP_005643583.1|	-	6.9e-14	51.3	1.4	4.1e-13	48.8	0.2	2.7	3	0	0	3	3	3	1	S4	domain
RS4NT	PF08071.12	gi|384434225|ref|YP_005643583.1|	-	8.9e-09	35.3	0.2	1.5e-08	34.6	0.2	1.3	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4_2	PF13275.6	gi|384434225|ref|YP_005643583.1|	-	0.011	15.5	0.0	0.063	13.1	0.0	2.1	2	0	0	2	2	2	0	S4	domain
Ribosomal_L26	PF16906.5	gi|384434226|ref|YP_005643584.1|	-	3e-28	98.1	0.7	4e-28	97.7	0.7	1.2	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|384434226|ref|YP_005643584.1|	-	1.9e-06	27.6	5.3	4.9e-06	26.3	5.3	1.8	1	1	0	1	1	1	1	KOW	motif
GTP_EFTU_D2	PF03144.25	gi|384434226|ref|YP_005643584.1|	-	0.012	16.0	0.6	0.019	15.3	0.6	1.4	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	2
Ribosomal_L14	PF00238.19	gi|384434227|ref|YP_005643585.1|	-	3.8e-38	130.3	0.0	4.3e-38	130.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
PAS_3	PF08447.12	gi|384434227|ref|YP_005643585.1|	-	0.069	13.4	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	PAS	fold
Ribosomal_S17	PF00366.20	gi|384434228|ref|YP_005643586.1|	-	1.5e-23	82.7	0.2	2e-23	82.2	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S17
UPF0086	PF01868.16	gi|384434229|ref|YP_005643587.1|	-	2.1e-10	40.4	0.0	2.2e-10	40.3	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
dCache_1	PF02743.18	gi|384434229|ref|YP_005643587.1|	-	0.15	11.8	0.0	0.16	11.7	0.0	1.0	1	0	0	1	1	1	0	Cache	domain
Ribosomal_L29	PF00831.23	gi|384434230|ref|YP_005643588.1|	-	2e-20	72.5	6.1	2.8e-20	72.1	6.1	1.2	1	0	0	1	1	1	1	Ribosomal	L29	protein
BEN	PF10523.9	gi|384434230|ref|YP_005643588.1|	-	0.022	15.0	0.1	0.027	14.7	0.1	1.3	1	1	0	1	1	1	0	BEN	domain
Ribosomal_S3_C	PF00189.20	gi|384434231|ref|YP_005643589.1|	-	1.2e-23	83.4	1.6	1.2e-23	83.4	1.6	1.6	2	0	0	2	2	2	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|384434231|ref|YP_005643589.1|	-	1e-15	57.3	0.5	2.6e-15	56.0	0.1	1.9	2	0	0	2	2	2	1	KH	domain
KH_1	PF00013.29	gi|384434231|ref|YP_005643589.1|	-	0.027	14.3	0.8	0.067	13.0	0.3	2.0	2	0	0	2	2	2	0	KH	domain
AtuA	PF07287.11	gi|384434231|ref|YP_005643589.1|	-	0.14	10.9	0.0	0.21	10.3	0.0	1.2	1	0	0	1	1	1	0	Acyclic	terpene	utilisation	family	protein	AtuA
Ribosomal_L22	PF00237.19	gi|384434232|ref|YP_005643590.1|	-	9.9e-29	99.6	0.6	2.5e-28	98.3	0.4	1.7	1	1	1	2	2	2	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|384434233|ref|YP_005643591.1|	-	1.1e-30	105.3	0.7	1.4e-30	105.0	0.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S19
RNA_pol_Rpb2_4	PF04566.13	gi|384434233|ref|YP_005643591.1|	-	0.039	14.3	0.3	0.074	13.4	0.3	1.4	1	0	0	1	1	1	0	RNA	polymerase	Rpb2,	domain	4
Ribosomal_L2_C	PF03947.18	gi|384434234|ref|YP_005643592.1|	-	2.8e-44	150.3	1.6	4.4e-44	149.7	1.6	1.3	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|384434234|ref|YP_005643592.1|	-	1.6e-17	63.2	0.0	4.9e-17	61.6	0.0	1.9	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.20	gi|384434235|ref|YP_005643593.1|	-	9.5e-14	51.5	5.9	1.1e-12	48.2	5.9	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
TusA	PF01206.17	gi|384434235|ref|YP_005643593.1|	-	0.0057	16.5	0.1	0.0073	16.1	0.1	1.2	1	0	0	1	1	1	1	Sulfurtransferase	TusA
RepC	PF06504.11	gi|384434235|ref|YP_005643593.1|	-	0.01	15.1	0.1	0.011	15.0	0.1	1.1	1	0	0	1	1	1	0	Replication	protein	C	(RepC)
NKWYS	PF10364.9	gi|384434235|ref|YP_005643593.1|	-	0.04	14.0	0.5	0.04	14.0	0.5	1.1	1	0	0	1	1	1	0	Putative	capsular	polysaccharide	synthesis	protein
Ribosomal_L4	PF00573.22	gi|384434236|ref|YP_005643594.1|	-	3.4e-39	134.5	0.1	4e-39	134.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.22	gi|384434237|ref|YP_005643595.1|	-	1e-70	238.6	0.0	1.2e-70	238.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.17	gi|384434238|ref|YP_005643596.1|	-	2.9e-13	50.0	0.0	4.7e-09	36.2	0.0	2.2	1	1	0	2	2	2	2	Putative	RNA	methyltransferase
tRNA-synt_1	PF00133.22	gi|384434239|ref|YP_005643597.1|	-	1.3e-181	605.0	2.3	1.7e-181	604.6	2.3	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|384434239|ref|YP_005643597.1|	-	2.2e-25	89.4	5.6	5.4e-25	88.1	5.6	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|384434239|ref|YP_005643597.1|	-	2.2e-21	76.0	1.2	1.6e-07	30.4	0.0	4.4	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|384434239|ref|YP_005643597.1|	-	0.006	16.1	0.5	0.022	14.3	0.1	2.2	2	0	0	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|384434239|ref|YP_005643597.1|	-	0.037	13.4	1.2	0.076	12.3	0.0	2.2	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(C)	catalytic	domain
Rpr2	PF04032.16	gi|384434239|ref|YP_005643597.1|	-	0.054	13.8	1.8	0.1	12.9	0.1	2.3	3	0	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-TFIIB	PF13453.6	gi|384434239|ref|YP_005643597.1|	-	1.6	8.1	3.8	7.2	6.0	0.0	3.3	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
Iso_dh	PF00180.20	gi|384434240|ref|YP_005643598.1|	-	3.4e-94	315.8	1.3	3.9e-94	315.6	1.3	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
PdxA	PF04166.12	gi|384434240|ref|YP_005643598.1|	-	0.009	15.4	0.0	0.019	14.4	0.0	1.5	1	0	0	1	1	1	1	Pyridoxal	phosphate	biosynthetic	protein	PdxA
DUF447	PF04289.12	gi|384434241|ref|YP_005643599.1|	-	2.2e-41	141.5	0.1	2.6e-41	141.3	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
E7R	PF17467.2	gi|384434241|ref|YP_005643599.1|	-	0.046	13.9	1.2	0.1	12.8	1.2	1.5	1	0	0	1	1	1	0	Viral	Protein	E7
Peptidase_M28	PF04389.17	gi|384434242|ref|YP_005643600.1|	-	2.5e-07	30.6	0.1	1.9e-06	27.7	0.1	2.3	1	1	0	1	1	1	1	Peptidase	family	M28
CNOT1_CAF1_bind	PF16415.5	gi|384434242|ref|YP_005643600.1|	-	0.0018	17.7	1.1	0.0062	16.0	1.1	1.9	1	0	0	1	1	1	1	CCR4-NOT	transcription	complex	subunit	1	CAF1-binding	domain
HAD_2	PF13419.6	gi|384434243|ref|YP_005643601.1|	-	8.1e-25	87.9	0.2	1.9e-24	86.7	0.2	1.6	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384434243|ref|YP_005643601.1|	-	1e-13	52.1	0.0	1.5e-13	51.5	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|384434243|ref|YP_005643601.1|	-	4.6e-07	29.8	0.0	7.5e-07	29.1	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|384434243|ref|YP_005643601.1|	-	0.0053	16.9	0.0	0.079	13.1	0.0	2.3	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
PNK3P	PF08645.11	gi|384434243|ref|YP_005643601.1|	-	0.028	14.1	0.5	0.35	10.6	0.5	2.7	1	1	0	1	1	1	0	Polynucleotide	kinase	3	phosphatase
FancD2	PF14631.6	gi|384434243|ref|YP_005643601.1|	-	0.06	10.8	0.2	0.074	10.5	0.2	1.0	1	0	0	1	1	1	0	Fanconi	anaemia	protein	FancD2	nuclease
HAD	PF12710.7	gi|384434243|ref|YP_005643601.1|	-	0.081	13.3	0.0	0.26	11.6	0.0	1.9	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
DUF4159	PF13709.6	gi|384434243|ref|YP_005643601.1|	-	0.09	12.2	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4159)
PGM_PMM_II	PF02879.16	gi|384434243|ref|YP_005643601.1|	-	0.13	12.9	0.0	0.3	11.7	0.0	1.5	1	0	0	1	1	1	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
GTP_EFTU	PF00009.27	gi|384434244|ref|YP_005643602.1|	-	2.2e-61	206.8	0.0	4.1e-61	205.9	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.18	gi|384434244|ref|YP_005643602.1|	-	2.8e-29	101.4	0.0	2.1e-28	98.6	0.0	2.5	1	1	1	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|384434244|ref|YP_005643602.1|	-	3.1e-23	81.7	0.0	7.6e-23	80.4	0.0	1.7	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
EFG_C	PF00679.24	gi|384434244|ref|YP_005643602.1|	-	1.8e-22	79.2	0.0	4.8e-22	77.8	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
GTP_EFTU_D2	PF03144.25	gi|384434244|ref|YP_005643602.1|	-	5.8e-13	49.0	0.0	3.7e-12	46.4	0.0	2.4	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|384434244|ref|YP_005643602.1|	-	0.00033	20.7	0.1	0.00095	19.2	0.1	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
RF3_C	PF16658.5	gi|384434244|ref|YP_005643602.1|	-	0.12	12.2	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Class	II	release	factor	RF3,	C-terminal	domain
ERCC4	PF02732.15	gi|384434245|ref|YP_005643603.1|	-	1.8e-25	89.9	0.5	3e-25	89.2	0.5	1.4	1	0	0	1	1	1	1	ERCC4	domain
HHH_2	PF12826.7	gi|384434245|ref|YP_005643603.1|	-	0.0015	18.6	0.0	0.0043	17.1	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|384434245|ref|YP_005643603.1|	-	0.014	16.0	0.2	0.076	13.6	0.1	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
DUF3641	PF12345.8	gi|384434245|ref|YP_005643603.1|	-	0.096	12.7	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3641)
PriA_C	PF18074.1	gi|384434245|ref|YP_005643603.1|	-	0.18	12.7	0.8	1.8	9.4	0.0	2.5	3	0	0	3	3	3	0	Primosomal	protein	N	C-terminal	domain
Ncstrn_small	PF18266.1	gi|384434245|ref|YP_005643603.1|	-	0.2	11.6	0.8	3.9	7.5	0.1	2.4	2	1	1	3	3	3	0	Nicastrin	small	lobe
Prefoldin_2	PF01920.20	gi|384434246|ref|YP_005643604.1|	-	3.9e-26	91.1	15.1	4.4e-26	90.9	15.1	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
WXG100	PF06013.12	gi|384434246|ref|YP_005643604.1|	-	0.017	15.4	1.8	3.3	8.0	0.1	2.3	2	0	0	2	2	2	0	Proteins	of	100	residues	with	WXG
MerR-DNA-bind	PF09278.11	gi|384434246|ref|YP_005643604.1|	-	0.024	15.2	9.3	0.17	12.5	1.5	2.6	3	0	0	3	3	3	0	MerR,	DNA	binding
Nup54	PF13874.6	gi|384434246|ref|YP_005643604.1|	-	0.025	14.7	2.6	0.2	11.8	0.3	2.2	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
FlaC_arch	PF05377.11	gi|384434246|ref|YP_005643604.1|	-	0.026	14.9	8.1	0.7	10.3	1.9	2.5	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
TEX12	PF15219.6	gi|384434246|ref|YP_005643604.1|	-	0.031	14.6	5.8	0.57	10.5	0.2	3.0	1	1	2	3	3	3	0	Testis-expressed	12
DUF4777	PF16007.5	gi|384434246|ref|YP_005643604.1|	-	0.045	14.0	0.1	2.1	8.7	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4777)
TPR_MLP1_2	PF07926.12	gi|384434246|ref|YP_005643604.1|	-	0.05	13.7	11.9	0.18	11.8	3.5	2.2	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
NPV_P10	PF05531.12	gi|384434246|ref|YP_005643604.1|	-	0.073	13.6	7.5	0.1	13.1	1.6	2.4	1	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
CDC37_C	PF08564.10	gi|384434246|ref|YP_005643604.1|	-	0.1	12.7	5.4	0.13	12.4	4.7	1.6	1	1	0	1	1	1	0	Cdc37	C	terminal	domain
DUF424	PF04242.13	gi|384434246|ref|YP_005643604.1|	-	0.13	12.6	1.2	0.39	11.0	0.8	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF424)
Mod_r	PF07200.13	gi|384434246|ref|YP_005643604.1|	-	0.26	11.4	12.5	7.4	6.7	12.3	2.0	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF3450	PF11932.8	gi|384434246|ref|YP_005643604.1|	-	0.87	8.8	9.7	0.59	9.4	0.7	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
UPF0242	PF06785.11	gi|384434246|ref|YP_005643604.1|	-	1.1	9.4	12.6	1.5	8.9	12.6	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Nas2_N	PF18265.1	gi|384434246|ref|YP_005643604.1|	-	1.1	9.2	6.4	2.3	8.2	0.3	2.9	2	1	0	2	2	2	0	Nas2	N_terminal	domain
DHR10	PF18595.1	gi|384434246|ref|YP_005643604.1|	-	1.2	9.2	13.3	4.2	7.4	1.8	2.3	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
DUF2203	PF09969.9	gi|384434246|ref|YP_005643604.1|	-	2.9	8.6	6.6	2.1e+02	2.6	6.6	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4140	PF13600.6	gi|384434246|ref|YP_005643604.1|	-	3.4	8.1	6.4	14	6.2	1.2	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Prefoldin	PF02996.17	gi|384434246|ref|YP_005643604.1|	-	3.5	7.6	11.1	2.3e+02	1.7	11.1	2.3	1	1	0	1	1	1	0	Prefoldin	subunit
Pcc1	PF09341.10	gi|384434247|ref|YP_005643605.1|	-	0.024	14.7	0.0	0.035	14.2	0.0	1.4	1	1	0	1	1	1	0	Transcription	factor	Pcc1
CBM_3	PF00942.18	gi|384434248|ref|YP_005643606.1|	-	0.063	13.7	0.0	0.13	12.7	0.0	1.4	1	0	0	1	1	1	0	Cellulose	binding	domain
Ribosomal_L37ae	PF01780.19	gi|384434249|ref|YP_005643607.1|	-	5.9e-25	87.2	5.7	6.2e-25	87.1	5.7	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|384434249|ref|YP_005643607.1|	-	0.00015	21.7	4.4	0.00015	21.6	3.8	1.4	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
DnaJ_CXXCXGXG	PF00684.19	gi|384434249|ref|YP_005643607.1|	-	0.0012	19.1	0.5	0.0014	18.9	0.5	1.2	1	0	0	1	1	1	1	DnaJ	central	domain
Rep_fac-A_C	PF08646.10	gi|384434249|ref|YP_005643607.1|	-	0.0033	17.2	1.8	0.004	16.9	1.8	1.2	1	0	0	1	1	1	1	Replication	factor-A	C	terminal	domain
zf-RRPl_C4	PF17026.5	gi|384434249|ref|YP_005643607.1|	-	0.0084	16.2	0.6	0.012	15.7	0.6	1.2	1	0	0	1	1	1	1	Putative	ribonucleoprotein	zinc-finger	pf	C4	type
DUF4379	PF14311.6	gi|384434249|ref|YP_005643607.1|	-	0.0085	16.4	7.3	0.43	11.0	0.3	2.1	2	0	0	2	2	2	2	Probable	Zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384434249|ref|YP_005643607.1|	-	0.02	14.8	0.9	0.025	14.5	0.9	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-TFIIB	PF13453.6	gi|384434249|ref|YP_005643607.1|	-	0.025	13.9	0.5	0.039	13.3	0.5	1.3	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
HMG_CoA_synt_C	PF08540.10	gi|384434249|ref|YP_005643607.1|	-	0.027	14.1	0.0	0.027	14.1	0.0	1.0	1	0	0	1	1	1	0	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
Zn_ribbon_SprT	PF17283.2	gi|384434249|ref|YP_005643607.1|	-	0.12	12.3	4.7	0.8	9.7	3.7	2.1	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
CpXC	PF14353.6	gi|384434249|ref|YP_005643607.1|	-	0.13	12.3	1.7	0.41	10.7	1.9	1.7	1	1	1	2	2	2	0	CpXC	protein
zf-H2C2_2	PF13465.6	gi|384434249|ref|YP_005643607.1|	-	0.24	11.9	3.5	1.5	9.4	0.4	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
RNase_PH	PF01138.21	gi|384434250|ref|YP_005643608.1|	-	2.7e-28	99.1	0.0	4e-28	98.6	0.0	1.3	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|384434250|ref|YP_005643608.1|	-	2.9e-11	43.2	0.1	6.8e-11	42.1	0.1	1.7	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.21	gi|384434251|ref|YP_005643609.1|	-	1.7e-34	119.2	0.0	2.4e-34	118.7	0.0	1.2	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.15	gi|384434251|ref|YP_005643609.1|	-	3.7e-14	52.5	0.0	7.3e-14	51.6	0.0	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
KH_6	PF15985.5	gi|384434252|ref|YP_005643610.1|	-	2e-06	28.0	0.0	5.7e-06	26.6	0.0	1.8	1	0	0	1	1	1	1	KH	domain
S1	PF00575.23	gi|384434252|ref|YP_005643610.1|	-	0.00055	20.2	0.3	0.0012	19.2	0.0	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
KH_1	PF00013.29	gi|384434252|ref|YP_005643610.1|	-	0.0026	17.6	0.1	0.0072	16.1	0.1	1.9	1	1	0	1	1	1	1	KH	domain
NotI	PF12183.8	gi|384434252|ref|YP_005643610.1|	-	0.032	13.6	0.2	0.22	10.9	0.1	1.9	1	1	1	2	2	2	0	Restriction	endonuclease	NotI
SBDS	PF01172.18	gi|384434253|ref|YP_005643611.1|	-	1.4e-25	89.2	0.1	3.2e-25	88.0	0.1	1.6	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|384434253|ref|YP_005643611.1|	-	8.1e-22	77.4	1.3	1.2e-21	76.9	1.3	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
EFG_C	PF00679.24	gi|384434253|ref|YP_005643611.1|	-	0.0029	17.6	0.0	0.0072	16.3	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
UPF0262	PF06793.12	gi|384434253|ref|YP_005643611.1|	-	0.056	13.5	0.1	0.085	13.0	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0262)
Proteasome	PF00227.26	gi|384434254|ref|YP_005643612.1|	-	7.6e-62	208.2	0.0	1.1e-61	207.6	0.0	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|384434254|ref|YP_005643612.1|	-	3.5e-13	48.9	0.9	8.6e-13	47.7	0.5	1.9	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
RNase_P_Rpp14	PF01900.19	gi|384434255|ref|YP_005643613.1|	-	6.3e-14	52.1	0.1	1e-13	51.4	0.1	1.3	1	0	0	1	1	1	1	Rpp14/Pop5	family
TCR_zetazeta	PF11628.8	gi|384434255|ref|YP_005643613.1|	-	0.014	15.1	3.7	0.024	14.3	3.7	1.4	1	0	0	1	1	1	0	T-cell	surface	glycoprotein	CD3	zeta	chain
Flp1_like	PF16982.5	gi|384434255|ref|YP_005643613.1|	-	0.056	12.9	2.8	0.17	11.3	2.8	1.8	2	0	0	2	2	2	0	Putative	Flagellin,	Flp1-like,	domain
RNase_P_p30	PF01876.16	gi|384434256|ref|YP_005643614.1|	-	1e-07	31.7	0.3	2.9e-06	26.9	0.3	2.2	1	1	0	1	1	1	1	RNase	P	subunit	p30
UBX	PF00789.20	gi|384434256|ref|YP_005643614.1|	-	0.022	14.9	0.1	0.11	12.8	0.1	1.9	2	0	0	2	2	2	0	UBX	domain
RNA_binding	PF01877.17	gi|384434257|ref|YP_005643615.1|	-	4.9e-29	101.0	1.8	7.3e-29	100.5	1.8	1.3	1	0	0	1	1	1	1	RNA	binding
MSA-2c	PF12238.8	gi|384434257|ref|YP_005643615.1|	-	1.3	9.0	3.4	3.2	7.7	0.3	2.6	1	1	2	3	3	3	0	Merozoite	surface	antigen	2c
Ribosomal_L15e	PF00827.17	gi|384434258|ref|YP_005643616.1|	-	6.3e-73	244.6	10.8	8.1e-73	244.2	10.8	1.2	1	0	0	1	1	1	1	Ribosomal	L15
DUF4720	PF15846.5	gi|384434258|ref|YP_005643616.1|	-	0.15	12.0	0.0	0.31	10.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4720)
MMR_HSR1_C	PF08438.10	gi|384434259|ref|YP_005643617.1|	-	2.6e-37	127.8	0.1	4.4e-37	127.1	0.1	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|384434259|ref|YP_005643617.1|	-	3.2e-22	78.8	0.2	1.2e-20	73.6	0.0	2.8	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|384434259|ref|YP_005643617.1|	-	2.3e-16	59.6	0.0	4.8e-16	58.6	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|384434259|ref|YP_005643617.1|	-	2.2e-05	24.0	1.4	0.00018	21.1	0.2	2.6	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|384434259|ref|YP_005643617.1|	-	0.0094	15.5	0.9	5.4	6.5	0.2	2.9	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
YchF-GTPase_C	PF06071.13	gi|384434259|ref|YP_005643617.1|	-	0.018	15.2	0.1	0.46	10.7	0.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF933)
NTP_transferase	PF00483.23	gi|384434260|ref|YP_005643618.1|	-	4.2e-36	124.8	0.0	5.7e-36	124.3	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.24	gi|384434260|ref|YP_005643618.1|	-	1.2e-18	66.0	26.0	1.1e-07	31.3	0.8	4.9	3	1	2	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.7	gi|384434260|ref|YP_005643618.1|	-	1.1e-13	51.9	0.0	1.4e-13	51.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.6	gi|384434260|ref|YP_005643618.1|	-	4e-09	36.1	8.7	3.8e-05	23.3	0.1	3.9	3	0	0	3	3	3	3	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|384434260|ref|YP_005643618.1|	-	7.4e-07	29.1	0.0	1.3e-05	25.1	0.0	2.1	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
NTP_transf_4	PF13562.6	gi|384434260|ref|YP_005643618.1|	-	0.008	16.4	0.1	3.9	7.6	0.0	3.1	2	1	0	2	2	2	1	Sugar	nucleotidyl	transferase
Glycos_transf_2	PF00535.26	gi|384434260|ref|YP_005643618.1|	-	0.026	14.3	0.0	0.49	10.2	0.0	2.2	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
BLYB	PF05289.11	gi|384434260|ref|YP_005643618.1|	-	0.08	13.2	2.5	7.5	6.8	0.2	2.8	3	0	0	3	3	3	0	Borrelia	hemolysin	accessory	protein
Fucokinase	PF07959.12	gi|384434260|ref|YP_005643618.1|	-	0.18	10.7	0.5	2.3	7.1	0.5	2.1	1	1	0	1	1	1	0	L-fucokinase
Ribosomal_S3Ae	PF01015.18	gi|384434261|ref|YP_005643619.1|	-	3.1e-66	222.8	1.3	3.5e-66	222.6	1.3	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
SpoU_methylase	PF00588.19	gi|384434262|ref|YP_005643620.1|	-	4e-33	114.6	0.0	6e-33	114.0	0.0	1.3	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.9	gi|384434262|ref|YP_005643620.1|	-	0.0022	17.9	0.0	0.098	12.5	0.0	2.2	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
MTS	PF05175.14	gi|384434263|ref|YP_005643621.1|	-	3.3e-11	43.0	0.0	1.5e-10	40.9	0.0	1.8	1	1	1	2	2	2	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|384434263|ref|YP_005643621.1|	-	3.6e-07	29.9	0.0	5.5e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|384434263|ref|YP_005643621.1|	-	0.00072	19.4	0.0	0.0011	18.8	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Cons_hypoth95	PF03602.15	gi|384434263|ref|YP_005643621.1|	-	0.0032	17.1	0.0	0.005	16.5	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
RepA_N	PF06970.11	gi|384434263|ref|YP_005643621.1|	-	0.0087	16.0	0.2	0.019	14.9	0.2	1.5	1	0	0	1	1	1	1	Replication	initiator	protein	A	(RepA)	N-terminus
Methyltransf_16	PF10294.9	gi|384434263|ref|YP_005643621.1|	-	0.049	13.4	0.0	0.093	12.5	0.0	1.4	1	0	0	1	1	1	0	Lysine	methyltransferase
Methyltransf_25	PF13649.6	gi|384434263|ref|YP_005643621.1|	-	0.084	13.6	0.0	0.13	13.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384434263|ref|YP_005643621.1|	-	0.19	11.5	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|384434264|ref|YP_005643622.1|	-	4.2e-13	49.0	0.2	4.6e-12	45.6	0.2	2.0	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|384434264|ref|YP_005643622.1|	-	0.013	16.2	0.0	0.031	15.0	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384434264|ref|YP_005643622.1|	-	0.1	13.4	0.0	0.27	12.0	0.0	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
DUF655	PF04919.12	gi|384434265|ref|YP_005643623.1|	-	6e-72	241.4	3.5	7e-72	241.2	3.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.6	gi|384434265|ref|YP_005643623.1|	-	0.0011	19.2	0.1	0.0029	17.8	0.1	1.6	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.16	gi|384434266|ref|YP_005643624.1|	-	2.8e-08	34.1	0.4	3.3e-08	33.9	0.4	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
DDE_3	PF13358.6	gi|384434266|ref|YP_005643624.1|	-	0.0069	16.1	0.1	0.0094	15.7	0.1	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
UTRA	PF07702.13	gi|384434266|ref|YP_005643624.1|	-	0.064	13.1	0.0	0.1	12.4	0.0	1.4	1	1	0	1	1	1	0	UTRA	domain
DUF370	PF04025.12	gi|384434266|ref|YP_005643624.1|	-	0.12	12.5	1.6	0.65	10.1	0.3	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF370)
MitMem_reg	PF13012.6	gi|384434266|ref|YP_005643624.1|	-	0.17	12.3	1.1	2.2	8.7	0.1	2.1	1	1	1	2	2	2	0	Maintenance	of	mitochondrial	structure	and	function
Ribosomal_L21e	PF01157.18	gi|384434267|ref|YP_005643625.1|	-	4.1e-36	122.9	1.6	4.6e-36	122.7	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
CSD2	PF17876.1	gi|384434267|ref|YP_005643625.1|	-	0.0049	17.0	0.1	0.008	16.3	0.1	1.3	1	0	0	1	1	1	1	Cold	shock	domain
KH_4	PF13083.6	gi|384434267|ref|YP_005643625.1|	-	1.6	8.6	4.0	4	7.4	4.0	1.9	1	1	0	1	1	1	0	KH	domain
AdoHcyase	PF05221.17	gi|384434269|ref|YP_005643627.1|	-	3.4e-74	249.7	0.0	3.4e-43	147.9	0.1	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|384434269|ref|YP_005643627.1|	-	3.4e-62	209.3	0.8	5.8e-62	208.5	0.8	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
IlvN	PF07991.12	gi|384434269|ref|YP_005643627.1|	-	1e-07	31.7	0.2	2e-07	30.7	0.2	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|384434269|ref|YP_005643627.1|	-	2.5e-07	30.2	0.4	5.3e-07	29.2	0.4	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|384434269|ref|YP_005643627.1|	-	0.012	15.9	0.1	0.026	14.8	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
DUF2120	PF09893.9	gi|384434269|ref|YP_005643627.1|	-	0.04	14.0	0.2	0.23	11.5	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
Spermine_synth	PF01564.17	gi|384434270|ref|YP_005643628.1|	-	1.5e-48	164.7	0.0	2.3e-48	164.1	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Spermine_synt_N	PF17284.2	gi|384434270|ref|YP_005643628.1|	-	5e-10	39.1	1.0	2.6e-09	36.8	0.1	2.3	2	0	0	2	2	2	1	Spermidine	synthase	tetramerisation	domain
Methyltransf_30	PF05430.11	gi|384434270|ref|YP_005643628.1|	-	9.1e-06	25.6	0.0	2.1e-05	24.4	0.0	1.7	1	1	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_12	PF08242.12	gi|384434270|ref|YP_005643628.1|	-	1.5e-05	25.6	0.0	2.9e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384434270|ref|YP_005643628.1|	-	0.00028	21.5	0.0	0.00047	20.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384434270|ref|YP_005643628.1|	-	0.0022	17.5	0.0	0.0032	17.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.6	gi|384434270|ref|YP_005643628.1|	-	0.0027	17.5	0.0	0.0048	16.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|384434270|ref|YP_005643628.1|	-	0.0054	16.7	0.1	0.019	14.9	0.1	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_5	PF01795.19	gi|384434270|ref|YP_005643628.1|	-	0.0065	16.0	0.0	0.011	15.3	0.0	1.2	1	0	0	1	1	1	1	MraW	methylase	family
Methyltransf_23	PF13489.6	gi|384434270|ref|YP_005643628.1|	-	0.0086	15.9	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
DUF43	PF01861.16	gi|384434270|ref|YP_005643628.1|	-	0.033	13.4	0.1	0.077	12.2	0.1	1.5	1	1	0	1	1	1	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_2	PF00891.18	gi|384434270|ref|YP_005643628.1|	-	0.052	12.8	0.0	0.078	12.3	0.0	1.4	1	1	0	1	1	1	0	O-methyltransferase	domain
Ribosomal_L37e	PF01907.19	gi|384434271|ref|YP_005643629.1|	-	6.7e-25	87.0	11.3	7.4e-25	86.9	11.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
NOB1_Zn_bind	PF08772.11	gi|384434271|ref|YP_005643629.1|	-	0.0038	17.3	1.9	0.0045	17.1	1.9	1.2	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
Stc1	PF12898.7	gi|384434271|ref|YP_005643629.1|	-	0.0053	17.3	0.6	0.0056	17.2	0.6	1.1	1	0	0	1	1	1	1	Stc1	domain
Ephrin_rec_like	PF07699.13	gi|384434271|ref|YP_005643629.1|	-	0.0077	16.0	0.9	0.0096	15.7	0.9	1.3	1	0	0	1	1	1	1	Putative	ephrin-receptor	like
DZR	PF12773.7	gi|384434271|ref|YP_005643629.1|	-	0.024	14.7	1.6	0.031	14.3	1.6	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|384434271|ref|YP_005643629.1|	-	0.025	14.6	0.4	0.028	14.5	0.4	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Ribosomal_L32p	PF01783.23	gi|384434271|ref|YP_005643629.1|	-	0.27	11.5	8.0	0.29	11.4	6.8	1.7	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
LSM	PF01423.22	gi|384434272|ref|YP_005643630.1|	-	5.7e-24	83.6	0.7	6.3e-24	83.4	0.7	1.0	1	0	0	1	1	1	1	LSM	domain
HydF_dimer	PF18128.1	gi|384434272|ref|YP_005643630.1|	-	0.051	13.7	0.1	0.45	10.6	0.0	1.9	2	0	0	2	2	2	0	Hydrogen	maturase	F	dimerization	domain
FKBP_C	PF00254.28	gi|384434273|ref|YP_005643631.1|	-	3.6e-13	49.6	0.0	8.3e-13	48.5	0.0	1.7	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
FKBP26_C	PF18046.1	gi|384434273|ref|YP_005643631.1|	-	9.8e-07	28.8	0.2	2.2e-06	27.7	0.2	1.6	1	0	0	1	1	1	1	FKBP26_C-terminal
Fe-ADH_2	PF13685.6	gi|384434274|ref|YP_005643632.1|	-	1.3e-60	205.2	0.1	1.6e-60	204.9	0.1	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|384434274|ref|YP_005643632.1|	-	2e-20	72.9	0.2	1.2e-19	70.4	0.2	1.8	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|384434274|ref|YP_005643632.1|	-	4.7e-09	35.8	0.1	1.1e-07	31.4	0.1	2.4	1	1	0	1	1	1	1	3-dehydroquinate	synthase
Beta-Casp	PF10996.8	gi|384434275|ref|YP_005643633.1|	-	6.4e-24	84.4	0.0	1.5e-23	83.2	0.0	1.7	1	0	0	1	1	1	1	Beta-Casp	domain
KH_7	PF17214.3	gi|384434275|ref|YP_005643633.1|	-	1.4e-18	66.6	8.8	1.5e-17	63.3	1.1	3.1	3	0	0	3	3	3	2	KH	domain
RMMBL	PF07521.12	gi|384434275|ref|YP_005643633.1|	-	3.8e-18	65.2	0.1	1.8e-17	63.0	0.0	2.3	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_6	PF16661.5	gi|384434275|ref|YP_005643633.1|	-	1.8e-14	53.7	0.0	7.2e-13	48.4	0.0	2.4	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384434275|ref|YP_005643633.1|	-	9.5e-13	48.6	0.2	1.5e-11	44.7	0.2	2.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384434275|ref|YP_005643633.1|	-	4.9e-12	45.8	0.0	9.1e-12	44.9	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|384434275|ref|YP_005643633.1|	-	0.00032	20.6	0.1	0.0027	17.6	0.0	2.4	2	1	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|384434275|ref|YP_005643633.1|	-	0.00039	20.2	9.6	0.0082	15.9	0.3	2.9	1	1	1	2	2	2	2	KH	domain
KH_1	PF00013.29	gi|384434275|ref|YP_005643633.1|	-	0.026	14.3	2.4	0.73	9.7	0.0	2.7	2	0	0	2	2	2	0	KH	domain
A-2_8-polyST	PF07388.11	gi|384434275|ref|YP_005643633.1|	-	0.075	11.6	1.5	0.16	10.6	1.5	1.4	1	0	0	1	1	1	0	Alpha-2,8-polysialyltransferase	(POLYST)
Interferon	PF00143.19	gi|384434276|ref|YP_005643634.1|	-	0.0042	17.3	0.0	0.0047	17.1	0.0	1.0	1	0	0	1	1	1	1	Interferon	alpha/beta	domain
SpoU_sub_bind	PF08032.12	gi|384434276|ref|YP_005643634.1|	-	0.0052	17.0	3.5	0.42	10.9	0.1	2.0	1	1	1	2	2	2	2	RNA	2'-O	ribose	methyltransferase	substrate	binding
DNA_repr_REX1B	PF14966.6	gi|384434276|ref|YP_005643634.1|	-	0.0064	17.1	0.2	0.0071	17.0	0.2	1.1	1	0	0	1	1	1	1	DNA	repair	REX1-B
DUF677	PF05055.12	gi|384434276|ref|YP_005643634.1|	-	0.0068	15.3	2.1	0.0072	15.3	2.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF677)
RNase_E_G	PF10150.9	gi|384434276|ref|YP_005643634.1|	-	0.011	15.2	0.3	0.013	15.0	0.3	1.0	1	0	0	1	1	1	0	Ribonuclease	E/G	family
Gln-synt_C-ter	PF18318.1	gi|384434276|ref|YP_005643634.1|	-	0.013	15.4	0.9	0.015	15.2	0.9	1.1	1	0	0	1	1	1	0	Glutamine	synthetase	C-terminal	domain
HSBP1	PF06825.12	gi|384434276|ref|YP_005643634.1|	-	0.039	13.8	0.3	0.058	13.2	0.3	1.3	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
YdjO	PF14169.6	gi|384434276|ref|YP_005643634.1|	-	0.039	13.7	0.3	0.12	12.1	0.2	1.9	1	1	0	1	1	1	0	Cold-inducible	protein	YdjO
RraB	PF06877.11	gi|384434276|ref|YP_005643634.1|	-	0.042	14.6	0.8	0.06	14.1	0.8	1.3	1	1	0	1	1	1	0	Regulator	of	ribonuclease	activity	B
FlaC_arch	PF05377.11	gi|384434276|ref|YP_005643634.1|	-	0.048	14.1	5.9	0.12	12.8	3.1	2.1	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
RHH_1	PF01402.21	gi|384434276|ref|YP_005643634.1|	-	0.31	11.0	2.6	8	6.6	0.0	2.6	1	1	2	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Pox_A_type_inc	PF04508.12	gi|384434276|ref|YP_005643634.1|	-	0.58	10.1	5.2	0.52	10.2	2.6	2.2	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
HTH_22	PF13309.6	gi|384434277|ref|YP_005643635.1|	-	4.2e-05	23.5	1.6	0.0013	18.8	1.6	2.2	1	1	0	1	1	1	1	HTH	domain
HTH_3	PF01381.22	gi|384434277|ref|YP_005643635.1|	-	5.6e-05	23.1	0.1	7.4e-05	22.7	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_7	PF02796.15	gi|384434277|ref|YP_005643635.1|	-	0.00027	21.0	0.4	0.0004	20.4	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.6	gi|384434277|ref|YP_005643635.1|	-	0.00042	20.0	0.1	0.0006	19.5	0.1	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384434277|ref|YP_005643635.1|	-	0.00079	19.5	0.1	0.0012	18.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.20	gi|384434277|ref|YP_005643635.1|	-	0.00097	19.4	0.0	0.001	19.3	0.0	1.2	1	0	0	1	1	1	1	Transposase
HTH_17	PF12728.7	gi|384434277|ref|YP_005643635.1|	-	0.001	19.2	0.4	0.0046	17.1	0.1	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_8	PF02954.19	gi|384434277|ref|YP_005643635.1|	-	0.0017	18.1	0.0	0.0027	17.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
Phage_AlpA	PF05930.12	gi|384434277|ref|YP_005643635.1|	-	0.003	17.3	0.1	0.0042	16.9	0.1	1.3	1	0	0	1	1	1	1	Prophage	CP4-57	regulatory	protein	(AlpA)
CENP-B_N	PF04218.13	gi|384434277|ref|YP_005643635.1|	-	0.0075	15.9	0.1	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	CENP-B	N-terminal	DNA-binding	domain
HTH_26	PF13443.6	gi|384434277|ref|YP_005643635.1|	-	0.024	15.1	0.0	0.034	14.6	0.0	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
LZ_Tnp_IS481	PF13011.6	gi|384434277|ref|YP_005643635.1|	-	0.049	14.2	0.1	0.049	14.2	0.1	1.1	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_IclR	PF09339.10	gi|384434277|ref|YP_005643635.1|	-	0.067	13.0	0.0	0.086	12.7	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
RsgA_GTPase	PF03193.16	gi|384434277|ref|YP_005643635.1|	-	0.1	12.5	0.0	0.1	12.5	0.0	1.0	1	0	0	1	1	1	0	RsgA	GTPase
HTH_Tnp_1_2	PF13022.6	gi|384434277|ref|YP_005643635.1|	-	0.11	12.7	0.0	0.13	12.4	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_29	PF13551.6	gi|384434277|ref|YP_005643635.1|	-	0.13	12.3	1.1	0.13	12.2	0.1	1.5	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_1	PF00126.27	gi|384434277|ref|YP_005643635.1|	-	0.14	12.1	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
ADH_N	PF08240.12	gi|384434280|ref|YP_005643638.1|	-	1.2e-25	89.5	0.2	2.5e-25	88.5	0.2	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384434280|ref|YP_005643638.1|	-	6.5e-25	87.6	0.4	1.2e-24	86.7	0.4	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384434280|ref|YP_005643638.1|	-	8.1e-14	52.8	0.1	1.7e-13	51.8	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|384434280|ref|YP_005643638.1|	-	0.00013	21.4	2.4	0.00024	20.5	2.4	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
CMAS	PF02353.20	gi|384434280|ref|YP_005643638.1|	-	0.00025	20.5	0.0	0.00036	19.9	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
SIS_2	PF13580.6	gi|384434280|ref|YP_005643638.1|	-	0.0026	17.8	0.1	0.0051	16.8	0.1	1.4	1	0	0	1	1	1	1	SIS	domain
ELFV_dehydrog	PF00208.21	gi|384434280|ref|YP_005643638.1|	-	0.003	17.3	0.4	0.0048	16.7	0.4	1.2	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
adh_short	PF00106.25	gi|384434280|ref|YP_005643638.1|	-	0.0038	16.7	0.6	0.0062	16.0	0.6	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|384434280|ref|YP_005643638.1|	-	0.013	15.0	0.1	0.019	14.5	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Eno-Rase_NADH_b	PF12242.8	gi|384434280|ref|YP_005643638.1|	-	0.02	14.6	0.8	0.043	13.6	0.8	1.5	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
LDcluster4	PF18306.1	gi|384434280|ref|YP_005643638.1|	-	0.025	14.2	1.9	0.039	13.6	1.0	1.8	2	0	0	2	2	2	0	SLOG	cluster4	family
E1-N	PF14463.6	gi|384434280|ref|YP_005643638.1|	-	0.028	14.3	0.1	0.07	12.9	0.1	1.7	1	0	0	1	1	1	0	E1	N-terminal	domain
NAD_binding_10	PF13460.6	gi|384434280|ref|YP_005643638.1|	-	0.031	14.2	0.5	0.063	13.2	0.5	1.5	1	0	0	1	1	1	0	NAD(P)H-binding
2-Hacid_dh_C	PF02826.19	gi|384434280|ref|YP_005643638.1|	-	0.057	12.8	0.3	0.093	12.1	0.3	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|384434280|ref|YP_005643638.1|	-	0.065	12.5	1.2	0.11	11.8	1.2	1.3	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Amidase	PF01425.21	gi|384434281|ref|YP_005643639.1|	-	1.8e-77	261.3	0.3	1.2e-76	258.5	0.3	1.9	1	1	0	1	1	1	1	Amidase
Proteasome	PF00227.26	gi|384434282|ref|YP_005643640.1|	-	9.6e-50	168.7	0.4	1.1e-49	168.5	0.4	1.0	1	0	0	1	1	1	1	Proteasome	subunit
PBP	PF01161.20	gi|384434283|ref|YP_005643641.1|	-	4.3e-33	114.4	0.0	5.2e-33	114.2	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Rep_fac_C	PF08542.11	gi|384434284|ref|YP_005643642.1|	-	9.7e-25	86.8	1.9	1.4e-24	86.3	0.4	2.1	2	0	0	2	2	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|384434284|ref|YP_005643642.1|	-	6.5e-15	55.7	0.0	2.1e-14	54.1	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|384434284|ref|YP_005643642.1|	-	9.1e-14	51.6	0.0	1.5e-09	37.8	0.0	2.4	1	1	1	2	2	2	2	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|384434284|ref|YP_005643642.1|	-	8.2e-07	28.9	0.0	2.9e-06	27.1	0.0	1.9	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Rad17	PF03215.15	gi|384434284|ref|YP_005643642.1|	-	7.1e-06	26.1	0.0	1.8e-05	24.7	0.0	1.8	2	0	0	2	2	2	1	Rad17	P-loop	domain
AAA_14	PF13173.6	gi|384434284|ref|YP_005643642.1|	-	1.6e-05	25.0	0.1	0.00011	22.2	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384434284|ref|YP_005643642.1|	-	1.6e-05	25.2	0.3	0.13	12.5	0.0	3.0	2	1	1	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|384434284|ref|YP_005643642.1|	-	3.7e-05	24.2	0.2	0.016	15.6	0.0	3.1	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_3	PF07726.11	gi|384434284|ref|YP_005643642.1|	-	5.5e-05	23.0	0.0	0.00012	22.0	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49	PF06068.13	gi|384434284|ref|YP_005643642.1|	-	6.4e-05	22.3	0.0	0.00047	19.5	0.0	2.1	1	1	0	1	1	1	1	TIP49	P-loop	domain
ResIII	PF04851.15	gi|384434284|ref|YP_005643642.1|	-	8.8e-05	22.6	0.0	0.00069	19.7	0.0	2.0	1	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol3_delta	PF06144.13	gi|384434284|ref|YP_005643642.1|	-	0.00018	21.3	1.0	0.0072	16.1	0.3	2.4	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
AAA_assoc_2	PF16193.5	gi|384434284|ref|YP_005643642.1|	-	0.00027	21.2	0.1	0.00072	19.8	0.1	1.9	1	1	0	1	1	1	1	AAA	C-terminal	domain
AAA_18	PF13238.6	gi|384434284|ref|YP_005643642.1|	-	0.00027	21.5	0.0	0.001	19.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|384434284|ref|YP_005643642.1|	-	0.00055	19.9	0.0	0.0047	16.9	0.0	2.6	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_11	PF13086.6	gi|384434284|ref|YP_005643642.1|	-	0.0006	19.7	0.0	0.0015	18.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|384434284|ref|YP_005643642.1|	-	0.0011	18.9	0.1	0.002	18.1	0.1	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|384434284|ref|YP_005643642.1|	-	0.0015	18.1	0.0	0.0029	17.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|384434284|ref|YP_005643642.1|	-	0.0017	17.8	0.0	0.11	11.9	0.0	2.5	3	0	0	3	3	2	1	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.17	gi|384434284|ref|YP_005643642.1|	-	0.0025	17.6	0.0	0.0065	16.2	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
PhoH	PF02562.16	gi|384434284|ref|YP_005643642.1|	-	0.0041	16.6	0.0	0.41	10.0	0.0	2.5	2	0	0	2	2	2	1	PhoH-like	protein
TniB	PF05621.11	gi|384434284|ref|YP_005643642.1|	-	0.0044	16.4	0.0	0.11	11.8	0.0	2.4	2	0	0	2	2	2	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|384434284|ref|YP_005643642.1|	-	0.0078	15.4	0.0	0.016	14.4	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
T2SSE	PF00437.20	gi|384434284|ref|YP_005643642.1|	-	0.0079	15.3	0.0	0.018	14.1	0.0	1.6	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_25	PF13481.6	gi|384434284|ref|YP_005643642.1|	-	0.0097	15.5	0.0	0.019	14.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|384434284|ref|YP_005643642.1|	-	0.011	15.0	0.1	0.086	12.1	0.1	2.1	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_24	PF13479.6	gi|384434284|ref|YP_005643642.1|	-	0.012	15.3	0.1	0.043	13.5	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|384434284|ref|YP_005643642.1|	-	0.013	14.8	0.0	0.044	13.1	0.0	1.9	2	1	1	3	3	3	0	FtsK/SpoIIIE	family
Sigma54_activat	PF00158.26	gi|384434284|ref|YP_005643642.1|	-	0.031	14.0	0.0	0.68	9.6	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_33	PF13671.6	gi|384434284|ref|YP_005643642.1|	-	0.033	14.3	0.2	0.081	13.1	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
DEAD	PF00270.29	gi|384434284|ref|YP_005643642.1|	-	0.075	12.8	1.0	9.1	6.0	0.0	3.1	3	1	1	4	4	4	0	DEAD/DEAH	box	helicase
AAA_30	PF13604.6	gi|384434284|ref|YP_005643642.1|	-	0.091	12.5	0.1	0.36	10.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
Sigma54_activ_2	PF14532.6	gi|384434284|ref|YP_005643642.1|	-	0.11	12.7	0.0	0.63	10.1	0.0	2.1	1	1	0	1	1	1	0	Sigma-54	interaction	domain
AAA_28	PF13521.6	gi|384434284|ref|YP_005643642.1|	-	0.11	12.7	0.0	0.25	11.6	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|384434284|ref|YP_005643642.1|	-	0.12	12.7	0.3	0.72	10.2	0.1	2.2	1	1	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.18	gi|384434284|ref|YP_005643642.1|	-	0.14	11.9	0.0	0.23	11.2	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA	PF00004.29	gi|384434285|ref|YP_005643643.1|	-	2.8e-14	53.7	0.0	5.1e-14	52.8	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|384434285|ref|YP_005643643.1|	-	1.2e-09	38.1	0.0	2.2e-09	37.3	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|384434285|ref|YP_005643643.1|	-	5.9e-08	32.8	0.0	1.3e-07	31.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Rad17	PF03215.15	gi|384434285|ref|YP_005643643.1|	-	5.7e-07	29.6	0.7	7.4e-06	26.0	0.0	2.8	2	1	1	3	3	3	1	Rad17	P-loop	domain
AAA_14	PF13173.6	gi|384434285|ref|YP_005643643.1|	-	6.5e-06	26.2	0.0	1.5e-05	25.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384434285|ref|YP_005643643.1|	-	7.5e-06	26.4	0.0	1.8e-05	25.2	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|384434285|ref|YP_005643643.1|	-	1.5e-05	24.8	0.1	6.5e-05	22.7	0.0	2.1	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_assoc_2	PF16193.5	gi|384434285|ref|YP_005643643.1|	-	1.5e-05	25.2	0.2	8.8e-05	22.8	0.1	2.4	2	1	0	2	2	1	1	AAA	C-terminal	domain
AAA_22	PF13401.6	gi|384434285|ref|YP_005643643.1|	-	3.1e-05	24.2	0.0	0.00026	21.3	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
DUF815	PF05673.13	gi|384434285|ref|YP_005643643.1|	-	3.6e-05	23.0	0.0	9.9e-05	21.6	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
DNA_pol3_delta	PF06144.13	gi|384434285|ref|YP_005643643.1|	-	7.8e-05	22.5	0.2	0.00032	20.5	0.0	2.2	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
NACHT	PF05729.12	gi|384434285|ref|YP_005643643.1|	-	0.00031	20.7	0.1	0.069	13.1	0.0	3.1	1	1	2	3	3	3	1	NACHT	domain
AAA_18	PF13238.6	gi|384434285|ref|YP_005643643.1|	-	0.00053	20.5	0.0	0.0047	17.5	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_2	PF07724.14	gi|384434285|ref|YP_005643643.1|	-	0.00067	19.8	0.0	0.0013	18.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
NB-ARC	PF00931.22	gi|384434285|ref|YP_005643643.1|	-	0.00069	18.9	0.0	0.0026	17.0	0.0	1.9	2	0	0	2	2	2	1	NB-ARC	domain
AAA_33	PF13671.6	gi|384434285|ref|YP_005643643.1|	-	0.0009	19.4	0.0	0.0018	18.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|384434285|ref|YP_005643643.1|	-	0.0023	18.3	0.0	0.0072	16.7	0.0	1.9	1	0	0	1	1	1	1	RNA	helicase
Mg_chelatase	PF01078.21	gi|384434285|ref|YP_005643643.1|	-	0.0023	17.3	0.0	0.0036	16.7	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_17	PF13207.6	gi|384434285|ref|YP_005643643.1|	-	0.0024	18.3	0.0	0.013	15.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|384434285|ref|YP_005643643.1|	-	0.0077	15.8	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|384434285|ref|YP_005643643.1|	-	0.017	14.7	0.0	0.033	13.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|384434285|ref|YP_005643643.1|	-	0.026	14.2	0.0	0.067	12.9	0.0	1.7	1	1	0	1	1	1	0	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|384434285|ref|YP_005643643.1|	-	0.03	14.3	0.0	0.053	13.5	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
TIP49_C	PF17856.1	gi|384434285|ref|YP_005643643.1|	-	0.033	14.3	0.1	0.12	12.5	0.1	2.1	1	0	0	1	1	1	0	TIP49	AAA-lid	domain
AAA_28	PF13521.6	gi|384434285|ref|YP_005643643.1|	-	0.046	14.0	0.0	0.12	12.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF2797	PF10977.8	gi|384434285|ref|YP_005643643.1|	-	0.058	13.3	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2797)
TIP49	PF06068.13	gi|384434285|ref|YP_005643643.1|	-	0.06	12.5	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	TIP49	P-loop	domain
AFG1_ATPase	PF03969.16	gi|384434285|ref|YP_005643643.1|	-	0.06	12.2	0.0	0.78	8.6	0.0	2.1	2	0	0	2	2	2	0	AFG1-like	ATPase
Hydin_ADK	PF17213.3	gi|384434285|ref|YP_005643643.1|	-	0.065	13.5	0.0	0.11	12.8	0.0	1.3	1	0	0	1	1	1	0	Hydin	Adenylate	kinase-like	domain
AAA_11	PF13086.6	gi|384434285|ref|YP_005643643.1|	-	0.069	12.9	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Parvo_NS1	PF01057.17	gi|384434285|ref|YP_005643643.1|	-	0.095	11.8	0.0	0.36	9.9	0.0	1.9	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
Sigma54_activ_2	PF14532.6	gi|384434285|ref|YP_005643643.1|	-	0.17	12.0	0.0	0.38	10.9	0.0	1.7	1	1	0	1	1	1	0	Sigma-54	interaction	domain
MoaC	PF01967.21	gi|384434286|ref|YP_005643644.1|	-	5.3e-48	162.6	3.3	5.9e-48	162.4	3.3	1.0	1	0	0	1	1	1	1	MoaC	family
NfeD	PF01957.18	gi|384434286|ref|YP_005643644.1|	-	0.046	14.1	0.7	2.7	8.4	0.3	2.4	3	0	0	3	3	3	0	NfeD-like	C-terminal,	partner-binding
TrmB	PF01978.19	gi|384434287|ref|YP_005643645.1|	-	0.0008	19.2	0.2	0.001	18.9	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Cdc6_C	PF09079.11	gi|384434288|ref|YP_005643646.1|	-	4.6e-18	65.0	0.4	1.1e-17	63.8	0.4	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|384434288|ref|YP_005643646.1|	-	5.3e-13	49.4	0.1	2e-12	47.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|384434288|ref|YP_005643646.1|	-	3.7e-06	27.4	0.1	3.9e-05	24.1	0.1	2.5	1	1	0	1	1	1	1	AAA	ATPase	domain
TniB	PF05621.11	gi|384434288|ref|YP_005643646.1|	-	4.7e-06	26.2	0.0	1e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA	PF00004.29	gi|384434288|ref|YP_005643646.1|	-	0.00016	22.1	0.0	0.00049	20.5	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|384434288|ref|YP_005643646.1|	-	0.0055	17.2	0.4	0.041	14.4	0.0	2.6	3	1	0	3	3	2	1	ABC	transporter
ATPase_2	PF01637.18	gi|384434288|ref|YP_005643646.1|	-	0.017	15.1	5.3	0.055	13.4	0.5	2.6	1	1	1	3	3	3	0	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|384434288|ref|YP_005643646.1|	-	0.02	15.2	0.0	0.16	12.3	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|384434288|ref|YP_005643646.1|	-	0.027	14.6	2.1	0.29	11.2	2.0	2.7	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
NB-ARC	PF00931.22	gi|384434288|ref|YP_005643646.1|	-	0.058	12.6	0.0	0.11	11.6	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Roc	PF08477.13	gi|384434288|ref|YP_005643646.1|	-	0.082	13.1	0.1	0.27	11.4	0.1	1.9	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_7	PF12775.7	gi|384434288|ref|YP_005643646.1|	-	0.15	11.6	0.0	0.41	10.1	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
THUMP	PF02926.17	gi|384434289|ref|YP_005643647.1|	-	5.2e-18	65.5	2.4	6.1e-18	65.3	2.4	1.1	1	0	0	1	1	1	1	THUMP	domain
Sld5	PF05916.11	gi|384434290|ref|YP_005643648.1|	-	2.6e-11	43.9	1.0	3.7e-11	43.4	1.0	1.2	1	0	0	1	1	1	1	GINS	complex	protein
Inhibitor_I24	PF10465.9	gi|384434290|ref|YP_005643648.1|	-	0.084	12.9	0.2	0.17	11.9	0.2	1.5	1	0	0	1	1	1	0	PinA	peptidase	inhibitor
MCM	PF00493.23	gi|384434291|ref|YP_005643649.1|	-	1.2e-97	325.5	0.1	7.6e-97	322.8	0.0	2.1	2	0	0	2	2	2	1	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|384434291|ref|YP_005643649.1|	-	1.3e-35	122.0	0.1	2.5e-35	121.1	0.1	1.4	1	0	0	1	1	1	1	MCM	OB	domain
MCM_lid	PF17855.1	gi|384434291|ref|YP_005643649.1|	-	3.7e-28	97.8	1.4	8.2e-28	96.7	1.4	1.6	1	0	0	1	1	1	1	MCM	AAA-lid	domain
MCM_N	PF14551.6	gi|384434291|ref|YP_005643649.1|	-	2.2e-17	63.5	0.2	6.2e-17	62.1	0.2	1.8	1	0	0	1	1	1	1	MCM	N-terminal	domain
AAA_5	PF07728.14	gi|384434291|ref|YP_005643649.1|	-	6.6e-08	32.6	0.0	1.5e-07	31.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|384434291|ref|YP_005643649.1|	-	3.4e-07	29.8	0.1	0.00012	21.6	0.0	2.4	1	1	1	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.11	gi|384434291|ref|YP_005643649.1|	-	1.6e-05	24.8	0.0	3.3e-05	23.7	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|384434291|ref|YP_005643649.1|	-	6.2e-05	22.8	0.1	0.00032	20.5	0.1	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM_bind	PF09739.9	gi|384434291|ref|YP_005643649.1|	-	0.092	11.2	0.0	0.19	10.1	0.0	1.5	1	0	0	1	1	1	0	Mini-chromosome	maintenance	replisome	factor
AAA_30	PF13604.6	gi|384434291|ref|YP_005643649.1|	-	0.45	10.2	4.4	1.6	8.4	1.9	2.7	3	0	0	3	3	3	0	AAA	domain
FAM167	PF11652.8	gi|384434291|ref|YP_005643649.1|	-	0.63	10.6	7.3	4.9	7.7	0.4	4.1	5	1	1	6	6	5	0	FAM167
TssN	PF17555.2	gi|384434293|ref|YP_005643651.1|	-	0.011	15.1	10.7	0.013	14.9	10.7	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
RhodobacterPufX	PF11511.8	gi|384434293|ref|YP_005643651.1|	-	0.14	11.8	0.3	0.14	11.8	0.3	2.2	3	0	0	3	3	3	0	Intrinsic	membrane	protein	PufX
TssO	PF17561.2	gi|384434293|ref|YP_005643651.1|	-	0.17	12.0	0.0	0.17	12.0	0.0	1.9	2	1	1	3	3	3	0	Type	VI	secretion	system,	TssO
CPP1-like	PF11833.8	gi|384434293|ref|YP_005643651.1|	-	0.34	10.5	3.4	0.53	9.9	3.4	1.4	1	1	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
FUSC	PF04632.12	gi|384434293|ref|YP_005643651.1|	-	0.55	8.7	2.3	0.53	8.8	2.3	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
LptF_LptG	PF03739.14	gi|384434293|ref|YP_005643651.1|	-	0.75	8.6	11.3	1	8.1	11.3	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
DUF2070	PF09843.9	gi|384434293|ref|YP_005643651.1|	-	1	7.5	8.8	1.1	7.4	8.8	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
Herpes_LMP1	PF05297.11	gi|384434293|ref|YP_005643651.1|	-	1.6	7.8	12.1	1.9	7.6	12.1	1.1	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
Fig1	PF12351.8	gi|384434293|ref|YP_005643651.1|	-	2.1	8.2	9.4	69	3.3	9.4	2.0	1	1	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
DUF1201	PF06716.11	gi|384434293|ref|YP_005643651.1|	-	4.8	7.3	8.7	28	4.8	0.6	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1201)
YwcE	PF17368.2	gi|384434293|ref|YP_005643651.1|	-	8.7	7.1	10.0	0.77	10.5	3.5	2.0	1	1	1	2	2	2	0	Spore	morphogenesis	and	germination	YwcE
CarS-like	PF01864.17	gi|384434294|ref|YP_005643652.1|	-	1.1e-38	133.0	10.1	4.3e-38	131.0	10.1	1.7	1	1	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|384434294|ref|YP_005643652.1|	-	9e-05	22.4	5.6	9e-05	22.4	5.6	1.6	1	1	0	1	1	1	1	Cytidylyltransferase	family
E2	PF08199.11	gi|384434294|ref|YP_005643652.1|	-	0.14	12.2	0.8	6.7	6.7	0.1	2.7	2	0	0	2	2	2	0	Bacteriophage	E2-like	protein
AAA_24	PF13479.6	gi|384434295|ref|YP_005643653.1|	-	1.6e-05	24.7	0.0	2.3e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384434295|ref|YP_005643653.1|	-	3.4e-05	24.3	0.1	8.1e-05	23.1	0.1	1.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|384434295|ref|YP_005643653.1|	-	7.3e-05	23.1	0.2	0.00018	21.8	0.2	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|384434295|ref|YP_005643653.1|	-	0.00016	21.3	0.0	0.00087	18.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|384434295|ref|YP_005643653.1|	-	0.00017	22.0	0.0	0.00021	21.7	0.0	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase	PF06745.13	gi|384434295|ref|YP_005643653.1|	-	0.0002	20.8	0.5	0.0026	17.1	0.4	2.0	1	1	0	1	1	1	1	KaiC
Rad51	PF08423.11	gi|384434295|ref|YP_005643653.1|	-	0.001	18.4	0.7	0.057	12.7	0.5	2.8	1	1	1	2	2	2	1	Rad51
RNA_helicase	PF00910.22	gi|384434295|ref|YP_005643653.1|	-	0.0062	16.9	0.1	0.027	14.9	0.1	2.0	1	1	0	1	1	1	1	RNA	helicase
AAA_18	PF13238.6	gi|384434295|ref|YP_005643653.1|	-	0.0063	17.1	0.0	0.011	16.3	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|384434295|ref|YP_005643653.1|	-	0.0072	16.8	0.1	0.0075	16.8	0.1	1.3	1	1	0	1	1	1	1	ABC	transporter
ATPase_2	PF01637.18	gi|384434295|ref|YP_005643653.1|	-	0.0074	16.2	0.2	0.0098	15.8	0.2	1.2	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|384434295|ref|YP_005643653.1|	-	0.024	14.6	0.1	0.043	13.7	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
Roc	PF08477.13	gi|384434295|ref|YP_005643653.1|	-	0.026	14.8	0.1	0.18	12.0	0.0	2.1	2	1	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_35	PF14516.6	gi|384434295|ref|YP_005643653.1|	-	0.05	12.4	0.1	5.9	5.6	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
AAA_5	PF07728.14	gi|384434295|ref|YP_005643653.1|	-	0.054	13.5	0.0	0.076	13.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|384434295|ref|YP_005643653.1|	-	0.061	13.2	0.0	0.19	11.6	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
Hpr_kinase_C	PF07475.12	gi|384434295|ref|YP_005643653.1|	-	0.067	12.7	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	HPr	Serine	kinase	C-terminal	domain
RecA	PF00154.21	gi|384434295|ref|YP_005643653.1|	-	0.079	12.4	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_13	PF13166.6	gi|384434295|ref|YP_005643653.1|	-	0.099	11.3	0.1	0.13	10.9	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
DnaB_C	PF03796.15	gi|384434295|ref|YP_005643653.1|	-	0.14	11.5	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
ATP-synt_ab	PF00006.25	gi|384434295|ref|YP_005643653.1|	-	0.16	11.6	0.0	0.19	11.3	0.0	1.2	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
CbiA	PF01656.23	gi|384434295|ref|YP_005643653.1|	-	0.18	11.9	0.4	0.48	10.5	0.1	1.8	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PRK	PF00485.18	gi|384434295|ref|YP_005643653.1|	-	0.24	11.1	0.8	1.6	8.4	0.2	2.0	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF104	PF01954.16	gi|384434296|ref|YP_005643654.1|	-	3.3	8.2	6.5	2.5	8.6	0.9	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF104
CLP1_P	PF16575.5	gi|384434297|ref|YP_005643655.1|	-	3.3e-21	75.9	0.0	4.8e-21	75.4	0.0	1.2	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
CLP1_N	PF16573.5	gi|384434297|ref|YP_005643655.1|	-	0.013	15.7	0.0	0.03	14.5	0.0	1.6	1	0	0	1	1	1	0	N-terminal	beta-sandwich	domain	of	polyadenylation	factor
Pox_A32	PF04665.12	gi|384434297|ref|YP_005643655.1|	-	0.054	13.0	0.7	0.33	10.4	0.1	2.2	1	1	1	2	2	2	0	Poxvirus	A32	protein
DUF4348	PF14254.6	gi|384434297|ref|YP_005643655.1|	-	0.065	12.6	1.7	2.4	7.5	0.0	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4348)
AAA_22	PF13401.6	gi|384434297|ref|YP_005643655.1|	-	0.071	13.4	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|384434297|ref|YP_005643655.1|	-	0.079	12.0	0.0	0.13	11.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Thymidylate_kin	PF02223.17	gi|384434298|ref|YP_005643656.1|	-	5.9e-43	146.7	0.0	6.8e-43	146.5	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|384434298|ref|YP_005643656.1|	-	8.3e-10	38.9	2.3	0.00016	21.6	0.5	2.2	2	0	0	2	2	2	2	Deoxynucleoside	kinase
AAA_28	PF13521.6	gi|384434298|ref|YP_005643656.1|	-	5.3e-06	26.8	0.0	6.9e-06	26.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|384434298|ref|YP_005643656.1|	-	3.4e-05	24.4	0.2	0.00015	22.3	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
SKI	PF01202.22	gi|384434298|ref|YP_005643656.1|	-	0.00021	21.4	0.3	0.0045	17.1	0.1	2.1	2	0	0	2	2	2	1	Shikimate	kinase
AAA_17	PF13207.6	gi|384434298|ref|YP_005643656.1|	-	0.0053	17.2	0.0	2.7	8.4	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
KTI12	PF08433.10	gi|384434298|ref|YP_005643656.1|	-	0.012	15.0	0.1	0.061	12.8	0.0	1.9	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
SRP54	PF00448.22	gi|384434298|ref|YP_005643656.1|	-	0.018	14.7	0.1	0.065	12.8	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|384434298|ref|YP_005643656.1|	-	0.027	14.7	0.0	0.049	13.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|384434298|ref|YP_005643656.1|	-	0.028	14.8	0.0	0.041	14.3	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|384434298|ref|YP_005643656.1|	-	0.034	14.2	0.1	0.096	12.8	0.1	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ATPase	PF06745.13	gi|384434298|ref|YP_005643656.1|	-	0.035	13.5	0.2	0.13	11.5	0.0	1.9	2	0	0	2	2	2	0	KaiC
AAA_14	PF13173.6	gi|384434298|ref|YP_005643656.1|	-	0.04	14.0	1.2	0.052	13.6	0.1	1.9	2	1	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|384434298|ref|YP_005643656.1|	-	0.047	13.4	0.1	0.73	9.5	0.0	2.1	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
APS_kinase	PF01583.20	gi|384434298|ref|YP_005643656.1|	-	0.051	13.5	0.0	0.085	12.7	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_30	PF13604.6	gi|384434298|ref|YP_005643656.1|	-	0.065	13.0	0.0	0.078	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|384434298|ref|YP_005643656.1|	-	0.11	11.8	0.0	0.2	10.9	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
ABC_tran	PF00005.27	gi|384434298|ref|YP_005643656.1|	-	0.12	12.9	0.0	0.24	11.9	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.19	gi|384434298|ref|YP_005643656.1|	-	0.14	11.7	0.2	0.44	10.1	0.1	1.9	1	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|384434298|ref|YP_005643656.1|	-	0.15	12.2	0.0	0.76	9.9	0.0	2.0	2	1	1	3	3	3	0	AAA	domain
Auto_anti-p27	PF06677.12	gi|384434299|ref|YP_005643657.1|	-	6.3e-14	51.9	0.4	8.7e-14	51.4	0.4	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
UPF0147	PF03685.13	gi|384434300|ref|YP_005643658.1|	-	8.9e-36	121.8	2.1	9.9e-36	121.7	2.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
UPF0253	PF06786.12	gi|384434300|ref|YP_005643658.1|	-	0.039	14.2	0.3	0.37	11.1	0.1	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0253)
tRNA-synt_1d	PF00750.19	gi|384434301|ref|YP_005643659.1|	-	6e-33	114.2	1.5	1.7e-17	63.4	0.1	2.9	2	1	0	3	3	3	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|384434301|ref|YP_005643659.1|	-	1.7e-26	92.7	1.4	9.2e-26	90.4	0.0	2.6	3	0	0	3	3	3	1	DALR	anticodon	binding	domain
tRNA-synt_1e	PF01406.19	gi|384434301|ref|YP_005643659.1|	-	0.00017	21.0	0.8	0.34	10.2	0.1	2.9	2	2	1	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.11	gi|384434301|ref|YP_005643659.1|	-	0.00079	18.3	0.3	0.013	14.2	0.1	2.6	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(M)
Tospo_nucleocap	PF01533.16	gi|384434301|ref|YP_005643659.1|	-	0.012	15.0	0.0	0.024	14.1	0.0	1.4	1	0	0	1	1	1	0	Tospovirus	nucleocapsid	protein
tRNA-synt_1f	PF01921.18	gi|384434301|ref|YP_005643659.1|	-	0.018	14.0	0.5	0.068	12.1	0.0	2.1	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(K)
APG6_N	PF17675.1	gi|384434301|ref|YP_005643659.1|	-	0.044	14.3	4.1	0.088	13.3	4.1	1.4	1	0	0	1	1	1	0	Apg6	coiled-coil	region
Arg_tRNA_synt_N	PF03485.16	gi|384434301|ref|YP_005643659.1|	-	0.1	13.2	0.3	3.7	8.2	0.0	3.5	2	2	1	3	3	3	0	Arginyl	tRNA	synthetase	N	terminal	domain
zf-CCCH_4	PF18044.1	gi|384434303|ref|YP_005643661.1|	-	0.18	11.6	7.0	1.6	8.6	1.2	3.0	3	0	0	3	3	3	0	CCCH-type	zinc	finger
zf_CCCH_4	PF18345.1	gi|384434303|ref|YP_005643661.1|	-	0.47	10.6	10.0	2	8.6	2.2	3.3	3	0	0	3	3	3	0	Zinc	finger	domain
ANAPC2	PF08672.11	gi|384434304|ref|YP_005643662.1|	-	0.0025	18.3	0.5	0.0078	16.7	0.2	1.9	1	1	1	2	2	2	1	Anaphase	promoting	complex	(APC)	subunit	2
DUF1500	PF07389.12	gi|384434304|ref|YP_005643662.1|	-	0.013	15.6	0.0	0.016	15.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1500)
DUF4423	PF14394.6	gi|384434304|ref|YP_005643662.1|	-	0.015	15.0	0.1	0.02	14.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.19	gi|384434304|ref|YP_005643662.1|	-	0.021	14.7	0.1	0.032	14.1	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TBPIP	PF07106.13	gi|384434304|ref|YP_005643662.1|	-	0.026	14.5	0.1	0.046	13.7	0.1	1.4	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
Stork_head	PF10264.9	gi|384434304|ref|YP_005643662.1|	-	0.045	13.9	0.0	6.9	6.9	0.0	2.1	1	1	1	2	2	2	0	Winged	helix	Storkhead-box1	domain
RPA_C	PF08784.11	gi|384434304|ref|YP_005643662.1|	-	0.072	13.8	0.1	0.098	13.3	0.1	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
EF-hand_8	PF13833.6	gi|384434304|ref|YP_005643662.1|	-	0.1	12.4	0.5	2	8.3	0.1	2.2	1	1	0	2	2	2	0	EF-hand	domain	pair
MIase	PF02426.16	gi|384434304|ref|YP_005643662.1|	-	0.15	12.2	0.0	0.34	11.1	0.0	1.6	1	1	0	1	1	1	0	Muconolactone	delta-isomerase
SapB_1	PF05184.15	gi|384434305|ref|YP_005643663.1|	-	0.006	16.6	1.6	0.012	15.6	1.6	1.6	1	0	0	1	1	1	1	Saposin-like	type	B,	region	1
MIF4G_like_2	PF09090.11	gi|384434305|ref|YP_005643663.1|	-	0.021	14.3	0.4	0.033	13.6	0.4	1.2	1	0	0	1	1	1	0	MIF4G	like
Phg_2220_C	PF09524.10	gi|384434305|ref|YP_005643663.1|	-	0.063	13.4	0.1	0.18	11.9	0.1	1.8	2	0	0	2	2	2	0	Conserved	phage	C-terminus	(Phg_2220_C)
Cpn60_TCP1	PF00118.24	gi|384434306|ref|YP_005643664.1|	-	2.6e-172	573.9	12.7	2.9e-172	573.7	12.7	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
zinc_ribbon_15	PF17032.5	gi|384434307|ref|YP_005643665.1|	-	0.00086	20.0	3.9	0.009	16.7	0.2	2.5	2	0	0	2	2	2	1	zinc-ribbon	family
HypA	PF01155.19	gi|384434307|ref|YP_005643665.1|	-	0.092	12.8	3.5	2	8.5	0.2	2.4	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS91	PF14319.6	gi|384434307|ref|YP_005643665.1|	-	0.31	11.1	4.4	1	9.4	0.7	2.3	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|384434307|ref|YP_005643665.1|	-	0.34	10.5	0.1	0.34	10.5	0.1	2.5	2	1	0	2	2	2	0	TFIIB	zinc-binding
DZR	PF12773.7	gi|384434307|ref|YP_005643665.1|	-	0.92	9.6	5.9	0.95	9.5	0.4	2.2	2	0	0	2	2	2	0	Double	zinc	ribbon
Rep_fac-A_C	PF08646.10	gi|384434307|ref|YP_005643665.1|	-	5.9	6.6	9.2	0.78	9.5	0.8	2.5	2	1	0	2	2	2	0	Replication	factor-A	C	terminal	domain
tRNA-synt_1g	PF09334.11	gi|384434308|ref|YP_005643666.1|	-	0.2	10.4	0.0	0.34	9.6	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(M)
HTH_45	PF14947.6	gi|384434310|ref|YP_005643668.1|	-	0.0004	20.3	1.2	0.0034	17.3	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix
DprA_WH	PF17782.1	gi|384434310|ref|YP_005643668.1|	-	0.0018	18.3	0.0	1.8	8.8	0.0	2.3	2	0	0	2	2	2	2	DprA	winged	helix	domain
MarR_2	PF12802.7	gi|384434310|ref|YP_005643668.1|	-	0.0058	16.5	0.0	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|384434310|ref|YP_005643668.1|	-	0.0086	16.4	0.0	0.14	12.6	0.0	2.4	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_5	PF01022.20	gi|384434310|ref|YP_005643668.1|	-	0.028	14.3	0.0	0.099	12.5	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|384434310|ref|YP_005643668.1|	-	0.039	13.8	0.1	0.26	11.2	0.0	2.4	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
SieB	PF14163.6	gi|384434310|ref|YP_005643668.1|	-	0.058	12.9	0.1	0.058	12.9	0.1	1.6	2	0	0	2	2	2	0	Super-infection	exclusion	protein	B
AbiEi_4	PF13338.6	gi|384434310|ref|YP_005643668.1|	-	0.084	13.0	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
DUF4065	PF13274.6	gi|384434310|ref|YP_005643668.1|	-	3.6	8.5	9.7	0.75	10.7	6.1	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4065)
NAD_kinase	PF01513.21	gi|384434311|ref|YP_005643669.1|	-	1.9e-78	263.6	0.0	2.2e-78	263.4	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|384434311|ref|YP_005643669.1|	-	4.6e-08	32.7	0.2	1.5e-07	31.1	0.2	1.9	1	1	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
PFK	PF00365.20	gi|384434311|ref|YP_005643669.1|	-	0.038	13.3	0.0	0.055	12.8	0.0	1.3	1	0	0	1	1	1	0	Phosphofructokinase
Peripla_BP_6	PF13458.6	gi|384434311|ref|YP_005643669.1|	-	0.17	11.5	0.0	0.26	10.9	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
HTH_45	PF14947.6	gi|384434312|ref|YP_005643670.1|	-	0.0077	16.2	0.2	0.016	15.2	0.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.20	gi|384434312|ref|YP_005643670.1|	-	0.072	13.0	0.2	0.16	11.8	0.2	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Ribosomal_S19e	PF01090.19	gi|384434312|ref|YP_005643670.1|	-	0.14	11.9	0.1	0.24	11.1	0.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S19e
OTCace	PF00185.24	gi|384434313|ref|YP_005643671.1|	-	5.3e-53	179.3	0.1	6.9e-53	178.9	0.1	1.1	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.21	gi|384434313|ref|YP_005643671.1|	-	3.7e-39	134.1	0.0	7.5e-39	133.1	0.0	1.5	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
DUF4056	PF13265.6	gi|384434313|ref|YP_005643671.1|	-	0.16	11.3	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4056)
Nre_N	PF04894.12	gi|384434314|ref|YP_005643672.1|	-	2.9e-96	322.5	0.0	3.6e-96	322.1	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|384434314|ref|YP_005643672.1|	-	2.6e-33	114.2	0.1	4.5e-33	113.4	0.1	1.4	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
PHP_C	PF13263.6	gi|384434315|ref|YP_005643673.1|	-	1.9e-13	50.0	0.0	3.6e-13	49.0	0.0	1.5	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.19	gi|384434315|ref|YP_005643673.1|	-	0.00023	21.5	0.5	0.00051	20.4	0.4	1.7	1	1	0	1	1	1	1	PHP	domain
DUF3135	PF11333.8	gi|384434315|ref|YP_005643673.1|	-	0.018	15.3	0.1	0.031	14.5	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3135)
Semialdhyde_dh	PF01118.24	gi|384434316|ref|YP_005643674.1|	-	5.5e-34	117.2	0.0	1.1e-33	116.2	0.0	1.5	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|384434316|ref|YP_005643674.1|	-	1.5e-26	93.6	0.0	2.3e-26	93.0	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|384434316|ref|YP_005643674.1|	-	0.0076	16.4	0.0	0.015	15.4	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Ldh_1_N	PF00056.23	gi|384434316|ref|YP_005643674.1|	-	0.034	14.2	0.0	0.08	13.0	0.0	1.6	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.20	gi|384434316|ref|YP_005643674.1|	-	0.11	12.0	0.3	0.56	9.8	0.1	2.1	3	0	0	3	3	3	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DXP_reductoisom	PF02670.16	gi|384434316|ref|YP_005643674.1|	-	0.13	13.0	0.0	1.2	9.9	0.0	2.4	3	0	0	3	3	3	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
AA_kinase	PF00696.28	gi|384434317|ref|YP_005643675.1|	-	1.3e-47	162.4	0.6	1.6e-47	162.1	0.1	1.4	2	0	0	2	2	2	1	Amino	acid	kinase	family
TBK1_CCD1	PF18394.1	gi|384434317|ref|YP_005643675.1|	-	0.052	13.1	0.8	0.084	12.4	0.2	1.6	2	0	0	2	2	2	0	TANK-binding	kinase	1	coiled-coil	domain	1
ACT	PF01842.25	gi|384434317|ref|YP_005643675.1|	-	0.067	13.0	0.2	0.067	13.0	0.2	3.9	4	1	0	4	4	4	0	ACT	domain
MSP7_C	PF12948.7	gi|384434317|ref|YP_005643675.1|	-	0.093	13.4	1.7	0.21	12.2	1.7	1.5	1	0	0	1	1	1	0	MSP7-like	protein	C-terminal	domain
PALP	PF00291.25	gi|384434318|ref|YP_005643676.1|	-	6.8e-75	252.2	0.4	7.8e-75	252.0	0.4	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Zn-ribbon_8	PF09723.10	gi|384434318|ref|YP_005643676.1|	-	0.0067	16.5	0.2	0.012	15.7	0.2	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384434318|ref|YP_005643676.1|	-	0.014	14.9	0.5	0.028	13.9	0.5	1.4	1	0	0	1	1	1	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|384434318|ref|YP_005643676.1|	-	0.024	14.7	0.1	0.042	13.9	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_POL_M_15KD	PF02150.16	gi|384434318|ref|YP_005643676.1|	-	0.04	13.8	1.3	1.2	9.1	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_2	PF13240.6	gi|384434318|ref|YP_005643676.1|	-	0.058	13.1	1.2	0.14	11.9	1.2	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
Mu-like_Com	PF10122.9	gi|384434318|ref|YP_005643676.1|	-	0.17	11.3	0.5	0.38	10.2	0.5	1.5	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
zf-ribbon_3	PF13248.6	gi|384434318|ref|YP_005643676.1|	-	0.7	9.4	2.6	2	7.9	2.6	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
UbiD	PF01977.16	gi|384434319|ref|YP_005643677.1|	-	3.3e-132	441.2	0.0	3.8e-132	441.0	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
SUB1_ProdP9	PF18213.1	gi|384434319|ref|YP_005643677.1|	-	0.0043	16.9	1.8	0.2	11.5	0.1	3.2	4	0	0	4	4	4	1	SUB1	protease	Prodomain	ProdP9
DUF3420	PF11900.8	gi|384434319|ref|YP_005643677.1|	-	0.069	13.3	0.3	0.23	11.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3420)
Grg1	PF11034.8	gi|384434320|ref|YP_005643678.1|	-	0.034	14.4	0.1	0.048	13.9	0.1	1.1	1	0	0	1	1	1	0	Glucose-repressible	protein	Grg1
Snf7	PF03357.21	gi|384434321|ref|YP_005643679.1|	-	2.8e-05	23.8	1.8	3.6e-05	23.4	1.8	1.3	1	1	0	1	1	1	1	Snf7
LOH1CR12	PF10158.9	gi|384434321|ref|YP_005643679.1|	-	0.00059	19.9	0.2	0.0012	18.8	0.2	1.5	1	0	0	1	1	1	1	Tumour	suppressor	protein
ThrE	PF06738.12	gi|384434321|ref|YP_005643679.1|	-	0.034	13.5	0.1	0.053	12.9	0.1	1.2	1	0	0	1	1	1	0	Putative	threonine/serine	exporter
BLOC1S3	PF15753.5	gi|384434321|ref|YP_005643679.1|	-	0.044	13.9	1.5	0.24	11.5	1.3	2.1	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex	1	subunit	3
PPDK_N	PF01326.19	gi|384434322|ref|YP_005643680.1|	-	4.8e-111	371.2	2.5	7.3e-111	370.6	2.5	1.2	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|384434322|ref|YP_005643680.1|	-	6.6e-84	281.5	0.0	1.1e-83	280.7	0.0	1.3	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|384434322|ref|YP_005643680.1|	-	5.6e-27	93.3	0.4	1.5e-26	91.9	0.4	1.8	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Apo-VLDL-II	PF05418.11	gi|384434322|ref|YP_005643680.1|	-	0.0023	18.4	0.1	0.016	15.8	0.1	2.5	1	1	0	1	1	1	1	Apovitellenin	I	(Apo-VLDL-II)
Radical_SAM	PF04055.21	gi|384434322|ref|YP_005643680.1|	-	0.19	12.1	0.0	1.1	9.6	0.0	2.4	2	1	0	2	2	2	0	Radical	SAM	superfamily
Inos-1-P_synth	PF01658.17	gi|384434323|ref|YP_005643681.1|	-	1.4e-29	102.5	0.0	2.4e-29	101.8	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Acylphosphatase	PF00708.18	gi|384434324|ref|YP_005643682.1|	-	6.6e-29	100.2	0.0	7.2e-29	100.0	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
DUF2730	PF10805.8	gi|384434324|ref|YP_005643682.1|	-	0.19	11.9	0.0	0.19	11.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
PALP	PF00291.25	gi|384434325|ref|YP_005643683.1|	-	2e-41	142.3	0.0	2.7e-41	141.9	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Trp_syntA	PF00290.20	gi|384434326|ref|YP_005643684.1|	-	9.2e-32	109.9	0.0	1.1e-31	109.7	0.0	1.1	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|384434326|ref|YP_005643684.1|	-	6.4e-05	22.5	0.2	0.00018	21.0	0.1	1.7	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
NMO	PF03060.15	gi|384434326|ref|YP_005643684.1|	-	0.0012	18.3	0.1	0.0027	17.1	0.0	1.5	2	0	0	2	2	2	1	Nitronate	monooxygenase
TMP-TENI	PF02581.17	gi|384434326|ref|YP_005643684.1|	-	0.0023	17.3	0.0	0.0043	16.4	0.0	1.4	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
G3P_antiterm	PF04309.12	gi|384434326|ref|YP_005643684.1|	-	0.1	12.0	0.2	0.89	8.9	0.0	2.4	2	1	0	3	3	3	0	Glycerol-3-phosphate	responsive	antiterminator
Diphthami_syn_2	PF01902.17	gi|384434326|ref|YP_005643684.1|	-	0.12	11.8	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Diphthamide	synthase
Glycos_transf_3	PF00591.21	gi|384434327|ref|YP_005643685.1|	-	2.9e-71	240.0	0.0	4e-71	239.6	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|384434327|ref|YP_005643685.1|	-	1.2e-16	60.3	0.3	2.1e-16	59.5	0.3	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
PRAI	PF00697.22	gi|384434328|ref|YP_005643686.1|	-	7.5e-46	156.4	0.1	8.5e-46	156.2	0.1	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
Chorismate_bind	PF00425.18	gi|384434329|ref|YP_005643687.1|	-	2.4e-96	322.3	0.0	2.9e-96	322.0	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|384434329|ref|YP_005643687.1|	-	2e-18	67.0	0.1	1.2e-16	61.3	0.0	3.2	3	1	0	3	3	3	1	Anthranilate	synthase	component	I,	N	terminal	region
DUF4512	PF14975.6	gi|384434329|ref|YP_005643687.1|	-	0.017	15.8	0.1	0.033	14.9	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4512)
GATase	PF00117.28	gi|384434330|ref|YP_005643688.1|	-	1.8e-47	161.5	0.0	2e-47	161.4	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|384434330|ref|YP_005643688.1|	-	2.4e-14	53.6	0.1	4.6e-14	52.7	0.1	1.6	1	1	0	1	1	1	1	Peptidase	C26
IGPS	PF00218.21	gi|384434331|ref|YP_005643689.1|	-	2.3e-82	276.0	0.1	2.6e-82	275.8	0.1	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.21	gi|384434331|ref|YP_005643689.1|	-	6.9e-06	25.7	0.1	0.00049	19.6	0.0	2.4	1	1	0	2	2	2	1	Histidine	biosynthesis	protein
NanE	PF04131.14	gi|384434331|ref|YP_005643689.1|	-	0.021	14.0	0.1	0.056	12.6	0.0	1.8	2	1	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
ThiG	PF05690.14	gi|384434331|ref|YP_005643689.1|	-	0.062	12.6	0.0	0.58	9.4	0.0	2.1	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
TMP-TENI	PF02581.17	gi|384434331|ref|YP_005643689.1|	-	0.063	12.6	0.0	0.2	11.0	0.0	2.0	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase
Aminotran_1_2	PF00155.21	gi|384434332|ref|YP_005643690.1|	-	5.3e-84	282.5	0.0	6.1e-84	282.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|384434332|ref|YP_005643690.1|	-	2.5e-09	36.9	0.0	4.2e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|384434332|ref|YP_005643690.1|	-	4.8e-07	29.1	0.0	1e-06	28.0	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|384434332|ref|YP_005643690.1|	-	0.014	13.9	0.0	0.022	13.3	0.0	1.3	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|384434332|ref|YP_005643690.1|	-	0.051	12.9	0.0	0.076	12.3	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
DUF771	PF05595.11	gi|384434332|ref|YP_005643690.1|	-	0.083	12.9	0.1	0.78	9.7	0.1	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF771)
tRNA-synt_1	PF00133.22	gi|384434333|ref|YP_005643691.1|	-	4.3e-121	405.1	0.3	1.6e-119	399.9	0.3	2.2	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|384434333|ref|YP_005643691.1|	-	3.5e-33	114.7	2.5	1e-32	113.2	2.5	1.8	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|384434333|ref|YP_005643691.1|	-	4e-21	75.2	0.1	1.6e-09	37.0	0.0	3.5	3	0	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|384434333|ref|YP_005643691.1|	-	7.8e-06	25.5	0.2	0.00069	19.2	0.1	3.0	1	1	2	3	3	3	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.19	gi|384434333|ref|YP_005643691.1|	-	0.017	14.5	0.0	2	7.7	0.0	2.5	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
zf-TFIIB	PF13453.6	gi|384434333|ref|YP_005643691.1|	-	0.033	13.5	0.1	7.2	6.0	0.0	2.6	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.10	gi|384434333|ref|YP_005643691.1|	-	0.044	13.9	0.6	4.3	7.5	0.1	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|384434333|ref|YP_005643691.1|	-	0.32	11.0	1.0	24	5.1	0.3	2.6	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
NAD_binding_8	PF13450.6	gi|384434334|ref|YP_005643692.1|	-	2.4e-06	27.7	0.0	6.1e-06	26.4	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384434334|ref|YP_005643692.1|	-	0.00069	19.2	0.0	0.0014	18.3	0.0	1.5	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|384434334|ref|YP_005643692.1|	-	0.0014	19.1	0.0	0.005	17.4	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|384434334|ref|YP_005643692.1|	-	0.0026	17.0	0.0	0.0044	16.3	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384434334|ref|YP_005643692.1|	-	0.0032	17.1	0.2	0.013	15.1	0.2	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|384434334|ref|YP_005643692.1|	-	0.0038	16.5	0.0	0.0049	16.2	0.0	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|384434334|ref|YP_005643692.1|	-	0.0041	17.0	0.0	0.0077	16.1	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|384434334|ref|YP_005643692.1|	-	0.092	13.0	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.23	gi|384434334|ref|YP_005643692.1|	-	0.11	12.5	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|384434334|ref|YP_005643692.1|	-	0.13	11.9	0.1	0.25	11.0	0.1	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
UvrC_HhH_N	PF08459.11	gi|384434335|ref|YP_005643693.1|	-	0.057	13.3	0.1	0.058	13.3	0.1	1.3	1	1	0	1	1	1	0	UvrC	Helix-hairpin-helix	N-terminal
dsRBD2	PF17842.1	gi|384434337|ref|YP_005643695.1|	-	0.097	12.9	0.3	0.11	12.7	0.3	1.1	1	0	0	1	1	1	0	Double-stranded	RNA	binding	domain	2
DZR	PF12773.7	gi|384434338|ref|YP_005643696.1|	-	0.00034	20.6	5.6	0.068	13.2	2.0	2.1	1	1	1	2	2	2	2	Double	zinc	ribbon
Prok-RING_1	PF14446.6	gi|384434338|ref|YP_005643696.1|	-	0.0032	17.4	4.1	0.06	13.3	1.1	2.2	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
DUF4379	PF14311.6	gi|384434338|ref|YP_005643696.1|	-	0.0071	16.7	1.3	0.0071	16.7	1.3	1.6	2	0	0	2	2	2	1	Probable	Zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|384434338|ref|YP_005643696.1|	-	0.016	15.6	5.6	0.11	12.9	0.3	3.0	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-C2HC5	PF06221.13	gi|384434338|ref|YP_005643696.1|	-	0.03	14.3	4.9	1.9	8.5	4.9	2.6	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
Zn_ribbon_SprT	PF17283.2	gi|384434338|ref|YP_005643696.1|	-	0.031	14.2	9.1	7.9	6.5	1.6	3.2	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zf-tcix	PF14952.6	gi|384434338|ref|YP_005643696.1|	-	0.032	13.9	5.0	0.11	12.1	0.4	2.4	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Rep_fac-A_C	PF08646.10	gi|384434338|ref|YP_005643696.1|	-	0.033	13.9	2.2	0.043	13.6	2.2	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
zf-TFIIB	PF13453.6	gi|384434338|ref|YP_005643696.1|	-	0.034	13.5	2.5	1.7	8.0	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.10	gi|384434338|ref|YP_005643696.1|	-	0.035	14.2	4.9	0.077	13.1	3.4	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
HypA	PF01155.19	gi|384434338|ref|YP_005643696.1|	-	0.036	14.1	3.8	0.42	10.6	1.1	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-AN1	PF01428.16	gi|384434338|ref|YP_005643696.1|	-	0.056	13.6	8.2	0.86	9.8	3.2	2.5	1	1	1	2	2	2	0	AN1-like	Zinc	finger
zinc_ribbon_2	PF13240.6	gi|384434338|ref|YP_005643696.1|	-	0.082	12.6	0.5	0.082	12.6	0.5	3.5	3	1	0	3	3	3	0	zinc-ribbon	domain
DUF1272	PF06906.11	gi|384434338|ref|YP_005643696.1|	-	0.083	13.0	7.7	0.67	10.1	7.7	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-C3HC4_3	PF13920.6	gi|384434338|ref|YP_005643696.1|	-	0.14	12.0	9.5	2.5	8.0	0.2	2.5	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-ribbon_3	PF13248.6	gi|384434338|ref|YP_005643696.1|	-	0.14	11.6	0.5	0.14	11.6	0.5	3.1	2	1	0	2	2	2	0	zinc-ribbon	domain
C1_2	PF03107.16	gi|384434338|ref|YP_005643696.1|	-	0.17	12.2	8.7	2.3	8.6	8.8	2.3	1	1	0	1	1	1	0	C1	domain
zf-C4_Topoisom	PF01396.19	gi|384434338|ref|YP_005643696.1|	-	0.25	11.2	8.6	0.83	9.5	0.4	3.0	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Mu-like_Com	PF10122.9	gi|384434338|ref|YP_005643696.1|	-	0.27	10.7	7.5	1.9	8.0	0.3	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
ADK_lid	PF05191.14	gi|384434338|ref|YP_005643696.1|	-	0.31	11.0	9.4	0.59	10.2	5.5	2.3	2	1	0	2	2	2	0	Adenylate	kinase,	active	site	lid
A2L_zn_ribbon	PF08792.10	gi|384434338|ref|YP_005643696.1|	-	0.32	10.7	8.3	2.1	8.2	3.9	2.5	2	1	0	2	2	2	0	A2L	zinc	ribbon	domain
Sgf11	PF08209.11	gi|384434338|ref|YP_005643696.1|	-	0.35	10.5	6.1	11	5.6	0.1	3.2	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
zf-BED	PF02892.15	gi|384434338|ref|YP_005643696.1|	-	0.43	10.6	11.9	3.5	7.7	0.8	3.2	1	1	2	3	3	3	0	BED	zinc	finger
zf-IS66	PF13005.7	gi|384434338|ref|YP_005643696.1|	-	0.48	10.9	7.1	1.7	9.1	0.2	2.9	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.12	gi|384434338|ref|YP_005643696.1|	-	0.64	9.6	10.2	2.3	7.8	0.5	3.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
zf-B_box	PF00643.24	gi|384434338|ref|YP_005643696.1|	-	0.84	9.8	9.8	3.5	7.9	5.6	2.8	2	1	0	2	2	2	0	B-box	zinc	finger
DiS_P_DiS	PF06750.13	gi|384434338|ref|YP_005643696.1|	-	1.1	9.5	4.5	10	6.3	0.0	2.7	2	1	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Zn_Tnp_IS1595	PF12760.7	gi|384434338|ref|YP_005643696.1|	-	2	8.5	11.2	0.7	9.9	0.8	2.6	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|384434338|ref|YP_005643696.1|	-	2.1	9.4	13.5	27	6.0	0.2	3.3	3	0	0	3	3	3	0	C2H2-type	zinc	finger
DNA_ligase_ZBD	PF03119.16	gi|384434338|ref|YP_005643696.1|	-	2.6	8.1	7.5	1.3	9.1	0.4	2.8	3	0	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
FANCL_C	PF11793.8	gi|384434338|ref|YP_005643696.1|	-	6.8	6.9	9.4	3	8.1	0.3	2.7	2	1	0	2	2	2	0	FANCL	C-terminal	domain
zf-C2H2	PF00096.26	gi|384434338|ref|YP_005643696.1|	-	7	7.3	14.8	28	5.4	0.3	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-C2HC_2	PF13913.6	gi|384434338|ref|YP_005643696.1|	-	7.8	6.5	15.7	11	6.0	0.9	3.2	3	0	0	3	3	3	0	zinc-finger	of	a	C2HC-type
zf-Di19	PF05605.12	gi|384434338|ref|YP_005643696.1|	-	9	6.7	11.9	4.9	7.5	0.4	3.1	2	1	1	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
TFIIS_C	PF01096.18	gi|384434338|ref|YP_005643696.1|	-	9.5	6.2	9.7	1.1	9.2	0.6	2.6	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
DUF3189	PF11385.8	gi|384434339|ref|YP_005643697.1|	-	0.049	13.5	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3189)
HhH-GPD	PF00730.25	gi|384434340|ref|YP_005643698.1|	-	2.7e-05	24.6	0.1	4.4e-05	23.9	0.1	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
2-Hacid_dh_C	PF02826.19	gi|384434341|ref|YP_005643699.1|	-	4.9e-47	159.6	1.3	6.5e-47	159.2	0.4	1.7	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|384434341|ref|YP_005643699.1|	-	8.7e-34	116.1	1.3	1.1e-33	115.8	1.3	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|384434341|ref|YP_005643699.1|	-	8.6e-09	35.7	0.5	1.8e-08	34.7	0.5	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|384434341|ref|YP_005643699.1|	-	7.8e-07	29.3	0.7	1.5e-06	28.4	0.7	1.5	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384434341|ref|YP_005643699.1|	-	0.00054	19.3	2.7	0.00093	18.6	1.9	1.8	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|384434341|ref|YP_005643699.1|	-	0.0022	17.6	0.4	0.0039	16.8	0.4	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
PrpR_N	PF06506.11	gi|384434341|ref|YP_005643699.1|	-	0.0031	17.1	1.0	0.05	13.2	0.1	2.7	3	0	0	3	3	3	1	Propionate	catabolism	activator
DpaA_N	PF16924.5	gi|384434341|ref|YP_005643699.1|	-	0.0037	17.3	0.3	0.013	15.6	0.1	2.0	2	0	0	2	2	2	1	Dipicolinate	synthase	subunit	A	N-terminal	domain
F420_oxidored	PF03807.17	gi|384434341|ref|YP_005643699.1|	-	0.0058	17.2	0.4	0.018	15.6	0.4	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.18	gi|384434341|ref|YP_005643699.1|	-	0.01	15.7	0.1	0.019	14.8	0.1	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|384434341|ref|YP_005643699.1|	-	0.021	15.3	0.1	3.8	8.0	0.1	3.3	3	1	0	3	3	3	0	XdhC	Rossmann	domain
DapB_N	PF01113.20	gi|384434341|ref|YP_005643699.1|	-	0.071	13.2	2.9	0.11	12.6	0.3	2.6	3	1	1	4	4	4	0	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|384434341|ref|YP_005643699.1|	-	0.097	13.0	3.3	0.15	12.4	1.5	2.4	2	2	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|384434341|ref|YP_005643699.1|	-	0.24	11.8	4.0	0.092	13.2	0.8	1.9	3	0	0	3	3	2	0	Putative	NAD(P)-binding
Aminotran_5	PF00266.19	gi|384434342|ref|YP_005643700.1|	-	7.5e-29	100.8	0.0	8.8e-29	100.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|384434342|ref|YP_005643700.1|	-	2.5e-05	23.0	0.0	3.6e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|384434342|ref|YP_005643700.1|	-	0.00021	20.6	0.0	0.00042	19.6	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Fer2_BFD	PF04324.15	gi|384434342|ref|YP_005643700.1|	-	0.04	14.3	0.9	0.28	11.6	0.3	2.4	2	0	0	2	2	2	0	BFD-like	[2Fe-2S]	binding	domain
Pyridoxal_deC	PF00282.19	gi|384434342|ref|YP_005643700.1|	-	0.13	10.9	0.0	0.24	10.0	0.0	1.3	1	0	0	1	1	1	0	Pyridoxal-dependent	decarboxylase	conserved	domain
RNA_pol_Rpb6	PF01192.22	gi|384434343|ref|YP_005643701.1|	-	8.1e-13	48.1	0.0	1e-12	47.7	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
DDE_Tnp_1_4	PF13701.6	gi|384434343|ref|YP_005643701.1|	-	0.088	11.1	0.0	0.094	11.0	0.0	1.1	1	0	0	1	1	1	0	Transposase	DDE	domain	group	1
Topoisom_bac	PF01131.20	gi|384434344|ref|YP_005643702.1|	-	4.5e-104	348.7	0.0	5.8e-104	348.4	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|384434344|ref|YP_005643702.1|	-	1.4e-13	51.0	1.2	5e-13	49.2	0.0	2.5	2	1	0	2	2	2	1	Toprim	domain
Mnd1	PF03962.15	gi|384434344|ref|YP_005643702.1|	-	0.0024	18.1	5.5	2.4	8.5	0.0	4.0	4	0	0	4	4	4	2	Mnd1	HTH	domain
AAA	PF00004.29	gi|384434345|ref|YP_005643703.1|	-	4.5e-39	133.9	0.0	2.4e-38	131.6	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.18	gi|384434345|ref|YP_005643703.1|	-	7.1e-11	42.0	3.9	2e-10	40.6	3.9	1.7	1	0	0	1	1	1	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_lid_3	PF17862.1	gi|384434345|ref|YP_005643703.1|	-	1.1e-08	34.7	0.0	3.3e-08	33.2	0.0	1.8	2	0	0	2	2	1	1	AAA+	lid	domain
Vps4_C	PF09336.10	gi|384434345|ref|YP_005643703.1|	-	2.5e-07	30.6	0.4	1.1e-06	28.5	0.1	2.2	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_14	PF13173.6	gi|384434345|ref|YP_005643703.1|	-	6.6e-07	29.4	0.0	1.9e-06	27.9	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_2	PF07724.14	gi|384434345|ref|YP_005643703.1|	-	1.1e-06	28.9	0.0	2.8e-06	27.6	0.0	1.7	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|384434345|ref|YP_005643703.1|	-	5.5e-06	26.4	0.1	0.00011	22.2	0.1	3.0	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|384434345|ref|YP_005643703.1|	-	8.6e-06	25.6	0.0	2.7e-05	24.0	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_24	PF13479.6	gi|384434345|ref|YP_005643703.1|	-	1.2e-05	25.2	0.0	4.9e-05	23.1	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384434345|ref|YP_005643703.1|	-	1.8e-05	25.0	0.0	0.00096	19.4	0.0	2.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384434345|ref|YP_005643703.1|	-	4.3e-05	23.9	0.0	0.003	17.9	0.0	2.4	1	1	1	2	2	2	1	AAA	ATPase	domain
TIP49	PF06068.13	gi|384434345|ref|YP_005643703.1|	-	0.00052	19.3	0.0	0.0013	18.0	0.0	1.6	1	1	0	1	1	1	1	TIP49	P-loop	domain
ATPase_2	PF01637.18	gi|384434345|ref|YP_005643703.1|	-	0.0011	18.9	4.7	0.28	11.1	0.3	3.0	2	1	1	3	3	3	2	ATPase	domain	predominantly	from	Archaea
AAA_25	PF13481.6	gi|384434345|ref|YP_005643703.1|	-	0.0011	18.5	0.0	0.055	13.0	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.21	gi|384434345|ref|YP_005643703.1|	-	0.0015	17.9	0.0	0.0034	16.8	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
TPR_1	PF00515.28	gi|384434345|ref|YP_005643703.1|	-	0.0023	17.7	0.4	0.0062	16.3	0.4	1.8	1	0	0	1	1	1	1	Tetratricopeptide	repeat
AAA_18	PF13238.6	gi|384434345|ref|YP_005643703.1|	-	0.0029	18.1	0.0	0.011	16.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Bac_DnaA	PF00308.18	gi|384434345|ref|YP_005643703.1|	-	0.0031	17.4	0.0	0.0053	16.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	dnaA	protein
RNA_helicase	PF00910.22	gi|384434345|ref|YP_005643703.1|	-	0.0053	17.1	0.0	0.016	15.5	0.0	1.9	1	0	0	1	1	1	1	RNA	helicase
AAA_28	PF13521.6	gi|384434345|ref|YP_005643703.1|	-	0.011	15.9	0.0	0.062	13.6	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|384434345|ref|YP_005643703.1|	-	0.015	14.5	0.0	0.032	13.4	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
Viral_helicase1	PF01443.18	gi|384434345|ref|YP_005643703.1|	-	0.016	14.9	0.0	0.027	14.2	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
KAP_NTPase	PF07693.14	gi|384434345|ref|YP_005643703.1|	-	0.017	14.4	0.2	0.46	9.7	0.0	2.5	2	1	1	3	3	3	0	KAP	family	P-loop	domain
ResIII	PF04851.15	gi|384434345|ref|YP_005643703.1|	-	0.02	14.9	0.0	0.24	11.4	0.0	2.3	1	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_7	PF12775.7	gi|384434345|ref|YP_005643703.1|	-	0.03	13.9	0.0	0.09	12.3	0.0	1.8	1	1	0	1	1	1	0	P-loop	containing	dynein	motor	region
IstB_IS21	PF01695.17	gi|384434345|ref|YP_005643703.1|	-	0.037	13.8	0.0	0.067	12.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
TPR_7	PF13176.6	gi|384434345|ref|YP_005643703.1|	-	0.042	13.9	0.0	0.81	9.9	0.0	2.6	2	0	0	2	2	2	0	Tetratricopeptide	repeat
NACHT	PF05729.12	gi|384434345|ref|YP_005643703.1|	-	0.049	13.6	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
TPR_2	PF07719.17	gi|384434345|ref|YP_005643703.1|	-	0.056	13.6	1.3	0.12	12.5	0.2	2.2	2	0	0	2	2	1	0	Tetratricopeptide	repeat
DUF815	PF05673.13	gi|384434345|ref|YP_005643703.1|	-	0.064	12.4	0.0	0.14	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
ATP-synt_ab	PF00006.25	gi|384434345|ref|YP_005643703.1|	-	0.064	12.9	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Parvo_NS1	PF01057.17	gi|384434345|ref|YP_005643703.1|	-	0.065	12.3	0.0	0.12	11.4	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Zeta_toxin	PF06414.12	gi|384434345|ref|YP_005643703.1|	-	0.071	12.4	0.0	0.17	11.1	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
TPR_8	PF13181.6	gi|384434345|ref|YP_005643703.1|	-	0.075	13.3	2.4	0.73	10.2	0.3	2.9	2	0	0	2	2	2	0	Tetratricopeptide	repeat
ABC_tran	PF00005.27	gi|384434345|ref|YP_005643703.1|	-	0.083	13.4	0.0	0.65	10.5	0.0	2.2	2	0	0	2	2	2	0	ABC	transporter
CPT	PF07931.12	gi|384434345|ref|YP_005643703.1|	-	0.14	12.0	0.0	0.26	11.1	0.0	1.4	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
AAA_33	PF13671.6	gi|384434345|ref|YP_005643703.1|	-	0.17	12.0	0.0	0.3	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
TPR_11	PF13414.6	gi|384434345|ref|YP_005643703.1|	-	0.24	11.1	0.1	0.24	11.1	0.1	1.8	2	0	0	2	2	1	0	TPR	repeat
Snf7	PF03357.21	gi|384434346|ref|YP_005643704.1|	-	4.7e-06	26.3	1.0	6.9e-06	25.8	0.2	1.6	2	0	0	2	2	2	1	Snf7
Baculo_PEP_C	PF04513.12	gi|384434346|ref|YP_005643704.1|	-	0.0026	17.8	0.6	0.52	10.3	0.4	2.3	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
HTH_27	PF13463.6	gi|384434346|ref|YP_005643704.1|	-	0.017	15.6	1.5	2.5	8.7	0.1	3.1	2	1	1	3	3	3	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|384434346|ref|YP_005643704.1|	-	0.04	13.8	0.0	0.091	12.7	0.0	1.6	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|384434346|ref|YP_005643704.1|	-	0.057	13.3	0.6	0.4	10.6	0.1	2.3	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.6	gi|384434346|ref|YP_005643704.1|	-	0.15	12.0	0.0	0.33	10.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DivIVA	PF05103.13	gi|384434346|ref|YP_005643704.1|	-	0.42	10.7	6.3	0.25	11.5	1.1	2.5	3	0	0	3	3	3	0	DivIVA	protein
CdvA	PF18822.1	gi|384434347|ref|YP_005643705.1|	-	9e-40	135.3	11.5	1.4e-39	134.7	11.5	1.2	1	0	0	1	1	1	1	CdvA-like	coiled-coil	domain
FapA	PF03961.13	gi|384434347|ref|YP_005643705.1|	-	0.044	12.4	2.7	0.056	12.0	2.7	1.3	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Syntaxin-6_N	PF09177.11	gi|384434347|ref|YP_005643705.1|	-	0.047	14.3	2.3	0.21	12.2	1.9	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF1640	PF07798.11	gi|384434347|ref|YP_005643705.1|	-	0.067	13.2	5.4	0.1	12.7	5.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
Ribosomal_L19e	PF01280.20	gi|384434347|ref|YP_005643705.1|	-	0.074	13.1	1.7	0.26	11.3	1.4	2.0	2	0	0	2	2	2	0	Ribosomal	protein	L19e
YojJ	PF10372.9	gi|384434347|ref|YP_005643705.1|	-	0.098	12.8	1.3	1.5	8.9	0.3	2.7	3	0	0	3	3	3	0	Bacterial	membrane-spanning	protein	N-terminus
RE_AlwI	PF09491.10	gi|384434347|ref|YP_005643705.1|	-	0.12	11.2	6.2	0.16	10.8	6.2	1.1	1	0	0	1	1	1	0	AlwI	restriction	endonuclease
Fmp27_WPPW	PF10359.9	gi|384434347|ref|YP_005643705.1|	-	1.6	7.5	11.4	0.25	10.2	1.7	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
ZapB	PF06005.12	gi|384434347|ref|YP_005643705.1|	-	6.3	7.3	10.4	2.6	8.5	6.2	2.1	2	0	0	2	2	2	0	Cell	division	protein	ZapB
TarH	PF02203.15	gi|384434348|ref|YP_005643706.1|	-	0.031	14.2	0.6	0.031	14.2	0.6	1.7	1	1	1	2	2	2	0	Tar	ligand	binding	domain	homologue
DUF5084	PF16894.5	gi|384434348|ref|YP_005643706.1|	-	0.061	13.8	5.8	0.067	13.6	5.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5084)
Colicin_im	PF03857.13	gi|384434348|ref|YP_005643706.1|	-	0.091	12.7	3.4	0.11	12.4	3.4	1.3	1	0	0	1	1	1	0	Colicin	immunity	protein
Oxidored_q5_N	PF01059.17	gi|384434348|ref|YP_005643706.1|	-	0.14	12.3	5.7	0.19	11.9	5.7	1.2	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
DUF4282	PF14110.6	gi|384434348|ref|YP_005643706.1|	-	0.49	11.1	7.7	0.66	10.8	7.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
TssN	PF17555.2	gi|384434348|ref|YP_005643706.1|	-	2	7.7	7.6	2.4	7.5	7.6	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
DUF4131	PF13567.6	gi|384434348|ref|YP_005643706.1|	-	2.5	7.7	5.3	3.1	7.4	5.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Tetraspanin	PF00335.20	gi|384434348|ref|YP_005643706.1|	-	2.6	7.7	6.2	3.2	7.4	6.2	1.1	1	0	0	1	1	1	0	Tetraspanin	family
Synaptobrevin	PF00957.21	gi|384434348|ref|YP_005643706.1|	-	5.7	6.8	5.4	7.1	6.5	1.1	2.2	2	0	0	2	2	2	0	Synaptobrevin
DUF3810	PF12725.7	gi|384434348|ref|YP_005643706.1|	-	6.5	6.0	5.1	7.4	5.8	5.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3810)
Enolase_C	PF00113.22	gi|384434349|ref|YP_005643707.1|	-	5.3e-94	314.8	0.0	8.1e-94	314.2	0.0	1.2	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|384434349|ref|YP_005643707.1|	-	1.1e-37	129.2	0.2	1.5e-37	128.7	0.2	1.2	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|384434349|ref|YP_005643707.1|	-	0.0036	16.9	0.0	0.0052	16.4	0.0	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
TF_Zn_Ribbon	PF08271.12	gi|384434351|ref|YP_005643709.1|	-	3.2e-05	23.4	1.2	0.15	11.6	0.0	2.5	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.11	gi|384434351|ref|YP_005643709.1|	-	0.00013	21.5	1.2	0.087	12.5	0.1	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384434351|ref|YP_005643709.1|	-	0.00013	21.8	0.4	0.23	11.4	0.0	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
FYDLN_acid	PF09538.10	gi|384434351|ref|YP_005643709.1|	-	0.00014	22.5	2.4	0.05	14.3	0.3	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(FYDLN_acid)
Zn-ribbon_8	PF09723.10	gi|384434351|ref|YP_005643709.1|	-	0.00023	21.2	0.2	0.36	11.0	0.1	2.3	2	0	0	2	2	2	2	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|384434351|ref|YP_005643709.1|	-	0.00031	20.6	1.8	0.044	13.7	0.1	2.3	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.6	gi|384434351|ref|YP_005643709.1|	-	0.00039	19.7	4.5	0.24	10.9	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384434351|ref|YP_005643709.1|	-	0.00056	19.5	4.9	0.27	11.0	0.4	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|384434351|ref|YP_005643709.1|	-	0.00067	19.6	0.5	0.002	18.1	0.5	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_5	PF13719.6	gi|384434351|ref|YP_005643709.1|	-	0.00098	18.8	1.7	0.066	13.0	0.1	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|384434351|ref|YP_005643709.1|	-	0.0012	18.6	0.9	1.4	8.7	0.1	2.2	2	0	0	2	2	2	2	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
OrfB_Zn_ribbon	PF07282.11	gi|384434351|ref|YP_005643709.1|	-	0.0013	18.6	0.3	1.6	8.7	0.0	2.4	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-ISL3	PF14690.6	gi|384434351|ref|YP_005643709.1|	-	0.0014	19.3	0.7	1.2	9.9	0.1	2.3	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CpXC	PF14353.6	gi|384434351|ref|YP_005643709.1|	-	0.0015	18.5	0.1	0.0027	17.7	0.1	1.4	1	0	0	1	1	1	1	CpXC	protein
DUF4428	PF14471.6	gi|384434351|ref|YP_005643709.1|	-	0.0016	18.3	2.2	0.41	10.6	0.1	2.5	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4428)
Nudix_N_2	PF14803.6	gi|384434351|ref|YP_005643709.1|	-	0.0034	17.3	1.0	2.7	8.0	0.0	2.5	2	0	0	2	2	2	1	Nudix	N-terminal
zf-RRN7	PF11781.8	gi|384434351|ref|YP_005643709.1|	-	0.0039	16.8	1.1	2.2	8.1	0.1	2.3	2	0	0	2	2	2	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-nanos	PF05741.13	gi|384434351|ref|YP_005643709.1|	-	0.0047	17.1	0.2	3	8.1	0.0	2.2	2	0	0	2	2	2	1	Nanos	RNA	binding	domain
zf-IS66	PF13005.7	gi|384434351|ref|YP_005643709.1|	-	0.0055	17.1	0.1	3.6	8.1	0.0	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_ligase_ZBD	PF03119.16	gi|384434351|ref|YP_005643709.1|	-	0.0075	16.3	3.0	0.2	11.7	0.1	2.6	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TFIIS_C	PF01096.18	gi|384434351|ref|YP_005643709.1|	-	0.0085	15.9	3.0	0.17	11.8	0.3	2.3	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
zf_UBZ	PF18439.1	gi|384434351|ref|YP_005643709.1|	-	0.009	15.6	1.3	2.6	7.7	0.1	2.4	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zf-FPG_IleRS	PF06827.14	gi|384434351|ref|YP_005643709.1|	-	0.0093	15.8	0.4	4.4	7.3	0.0	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf_Rg	PF17915.1	gi|384434351|ref|YP_005643709.1|	-	0.0099	15.3	0.4	3.8	7.0	0.0	2.4	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
DUF1610	PF07754.11	gi|384434351|ref|YP_005643709.1|	-	0.011	15.6	11.2	0.16	11.9	2.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Rubredoxin_2	PF18073.1	gi|384434351|ref|YP_005643709.1|	-	0.012	15.4	2.4	2.2	8.1	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Ogr_Delta	PF04606.12	gi|384434351|ref|YP_005643709.1|	-	0.013	15.5	1.4	2.3	8.3	0.1	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
DUF4379	PF14311.6	gi|384434351|ref|YP_005643709.1|	-	0.017	15.4	1.9	0.056	13.8	0.1	2.2	2	0	0	2	2	2	0	Probable	Zinc-ribbon	domain
GcpE	PF04551.14	gi|384434351|ref|YP_005643709.1|	-	0.018	14.1	0.1	0.023	13.8	0.1	1.1	1	0	0	1	1	1	0	GcpE	protein
zf-3CxxC	PF13695.6	gi|384434351|ref|YP_005643709.1|	-	0.019	15.5	0.9	0.023	15.2	0.1	1.7	2	0	0	2	2	1	0	Zinc-binding	domain
UPF0547	PF10571.9	gi|384434351|ref|YP_005643709.1|	-	0.019	15.0	5.8	0.18	11.9	0.8	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.20	gi|384434351|ref|YP_005643709.1|	-	0.02	14.9	2.7	2.4	8.2	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin
zf-ZPR1	PF03367.13	gi|384434351|ref|YP_005643709.1|	-	0.023	14.6	1.5	0.13	12.1	1.5	2.1	1	1	0	1	1	1	0	ZPR1	zinc-finger	domain
zf-Mss51	PF13824.6	gi|384434351|ref|YP_005643709.1|	-	0.028	14.5	0.6	3.3	7.9	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-3CxxC_2	PF17180.4	gi|384434351|ref|YP_005643709.1|	-	0.033	14.9	0.7	0.033	14.9	0.7	2.2	2	1	0	2	2	2	0	Zinc-binding	domain
Acetone_carb_G	PF08882.11	gi|384434351|ref|YP_005643709.1|	-	0.035	14.2	0.3	2.2	8.5	0.0	2.4	3	0	0	3	3	2	0	Acetone	carboxylase	gamma	subunit
HypA	PF01155.19	gi|384434351|ref|YP_005643709.1|	-	0.036	14.1	0.3	0.088	12.8	0.3	1.7	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_ribbon_SprT	PF17283.2	gi|384434351|ref|YP_005643709.1|	-	0.043	13.7	1.8	0.76	9.7	0.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|384434351|ref|YP_005643709.1|	-	0.048	13.6	5.6	0.89	9.5	0.5	2.7	2	1	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|384434351|ref|YP_005643709.1|	-	0.051	13.3	1.8	1.9	8.3	0.1	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|384434351|ref|YP_005643709.1|	-	0.057	12.8	0.3	7.4	6.0	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Prok-RING_1	PF14446.6	gi|384434351|ref|YP_005643709.1|	-	0.069	13.1	1.3	2.2	8.3	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Elf1	PF05129.13	gi|384434351|ref|YP_005643709.1|	-	0.076	13.1	0.8	1.5	8.9	0.1	2.3	2	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-HIT	PF04438.16	gi|384434351|ref|YP_005643709.1|	-	0.079	12.8	1.3	1.9	8.4	0.3	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
DNA_RNApol_7kD	PF03604.13	gi|384434351|ref|YP_005643709.1|	-	0.081	12.6	0.8	12	5.7	0.1	2.5	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF1272	PF06906.11	gi|384434351|ref|YP_005643709.1|	-	0.093	12.8	0.7	15	5.8	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
Sgf11	PF08209.11	gi|384434351|ref|YP_005643709.1|	-	0.093	12.3	3.0	3.8	7.2	0.2	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Cys_rich_CPXG	PF14255.6	gi|384434351|ref|YP_005643709.1|	-	0.12	12.2	2.4	5.2	7.0	0.0	2.6	3	0	0	3	3	2	0	Cysteine-rich	CPXCG
zf-H2C2_2	PF13465.6	gi|384434351|ref|YP_005643709.1|	-	0.15	12.6	2.7	3.1	8.4	0.5	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zinc_ribbon_9	PF14369.6	gi|384434351|ref|YP_005643709.1|	-	0.17	12.2	1.3	18	5.7	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon
Zn_Tnp_IS91	PF14319.6	gi|384434351|ref|YP_005643709.1|	-	0.27	11.3	1.2	14	5.8	0.0	2.2	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
Nop10p	PF04135.12	gi|384434351|ref|YP_005643709.1|	-	0.27	11.3	1.1	11	6.2	0.2	2.3	2	0	0	2	2	2	0	Nucleolar	RNA-binding	protein,	Nop10p	family
zf-ACC	PF17848.1	gi|384434351|ref|YP_005643709.1|	-	0.3	11.2	6.0	5.8	7.1	0.6	2.3	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf_CopZ	PF18423.1	gi|384434351|ref|YP_005643709.1|	-	0.36	10.8	2.6	17	5.5	0.2	2.3	2	0	0	2	2	2	0	Zinc	binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|384434351|ref|YP_005643709.1|	-	0.38	11.1	3.2	17	5.8	0.1	2.4	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-C2H2	PF00096.26	gi|384434351|ref|YP_005643709.1|	-	0.42	11.2	2.3	22	5.8	0.2	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-RING_7	PF02591.15	gi|384434351|ref|YP_005643709.1|	-	0.43	10.8	3.4	19	5.5	0.2	3.0	3	0	0	3	3	2	0	C4-type	zinc	ribbon	domain
ADK_lid	PF05191.14	gi|384434351|ref|YP_005643709.1|	-	0.5	10.4	2.8	17	5.5	0.2	2.4	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Ribosomal_L37ae	PF01780.19	gi|384434351|ref|YP_005643709.1|	-	0.82	9.8	3.5	7.7	6.7	0.1	2.8	2	1	1	3	3	3	0	Ribosomal	L37ae	protein	family
Peptidase_S24	PF00717.23	gi|384434352|ref|YP_005643710.1|	-	0.00036	20.4	0.1	0.00058	19.8	0.1	1.4	1	0	0	1	1	1	1	Peptidase	S24-like
GDC-P	PF02347.16	gi|384434353|ref|YP_005643711.1|	-	5e-13	48.7	0.0	1.4e-11	44.0	0.0	2.1	2	0	0	2	2	2	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.19	gi|384434353|ref|YP_005643711.1|	-	4.9e-10	38.9	0.3	1.2e-09	37.6	0.3	1.6	1	1	0	1	1	1	1	Aminotransferase	class-V
DUF126	PF01989.16	gi|384434353|ref|YP_005643711.1|	-	0.015	15.1	0.0	0.17	11.7	0.0	2.3	2	0	0	2	2	2	0	Aconitase	X	swivel	domain
Beta_elim_lyase	PF01212.21	gi|384434353|ref|YP_005643711.1|	-	0.018	14.3	0.1	0.035	13.4	0.1	1.4	1	0	0	1	1	1	0	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|384434353|ref|YP_005643711.1|	-	0.041	13.0	0.1	0.11	11.6	0.0	1.7	2	0	0	2	2	2	0	Aminotransferase	class	I	and	II
GDC-P	PF02347.16	gi|384434354|ref|YP_005643712.1|	-	8.9e-115	383.9	0.0	1.1e-114	383.6	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Cys_Met_Meta_PP	PF01053.20	gi|384434354|ref|YP_005643712.1|	-	0.064	11.8	0.0	0.12	10.8	0.0	1.4	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
GCV_T	PF01571.21	gi|384434355|ref|YP_005643713.1|	-	8.5e-62	208.8	0.0	1e-61	208.6	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|384434355|ref|YP_005643713.1|	-	3.7e-18	65.2	0.0	5.9e-18	64.6	0.0	1.3	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
CspB_prodomain	PF18425.1	gi|384434355|ref|YP_005643713.1|	-	0.03	14.3	0.4	0.082	12.9	0.3	1.7	2	0	0	2	2	2	0	Csp	protease	B	prodomain
DUF3575	PF12099.8	gi|384434355|ref|YP_005643713.1|	-	0.089	12.1	0.1	0.2	10.9	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3575)
GCV_H	PF01597.19	gi|384434356|ref|YP_005643714.1|	-	2.6e-43	146.8	1.1	2.9e-43	146.6	1.1	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|384434356|ref|YP_005643714.1|	-	0.0029	17.4	0.3	0.0061	16.4	0.3	1.5	1	0	0	1	1	1	1	Biotin-requiring	enzyme
RnfC_N	PF13375.6	gi|384434356|ref|YP_005643714.1|	-	0.015	15.3	0.0	0.026	14.5	0.0	1.4	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
PAC2	PF09754.9	gi|384434357|ref|YP_005643715.1|	-	3.1e-37	128.7	0.0	3.6e-37	128.5	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
HSP20	PF00011.21	gi|384434358|ref|YP_005643716.1|	-	0.0028	17.8	0.1	0.038	14.1	0.1	2.3	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|384434358|ref|YP_005643716.1|	-	0.028	14.0	0.1	1.5	8.4	0.0	2.2	2	0	0	2	2	2	0	HSP20-like	domain	found	in	ArsA
MazE_antitoxin	PF04014.18	gi|384434359|ref|YP_005643717.1|	-	2.9e-08	33.5	0.1	8.3e-08	32.0	0.1	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
ABC_tran	PF00005.27	gi|384434360|ref|YP_005643718.1|	-	6.8e-24	84.9	0.1	9e-24	84.5	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384434360|ref|YP_005643718.1|	-	1.9e-06	27.9	0.1	0.021	14.7	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384434360|ref|YP_005643718.1|	-	1e-05	25.1	0.2	3.8e-05	23.2	0.2	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|384434360|ref|YP_005643718.1|	-	0.033	13.9	0.1	0.079	12.7	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|384434360|ref|YP_005643718.1|	-	0.047	13.4	0.1	0.05	13.3	0.1	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_13	PF13166.6	gi|384434360|ref|YP_005643718.1|	-	0.077	11.6	0.3	0.48	9.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|384434360|ref|YP_005643718.1|	-	0.099	13.1	0.4	0.28	11.6	0.4	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|384434360|ref|YP_005643718.1|	-	0.1	13.1	0.0	0.19	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|384434360|ref|YP_005643718.1|	-	0.11	12.4	0.0	0.23	11.4	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
UPF0051	PF01458.17	gi|384434361|ref|YP_005643719.1|	-	6.6e-64	215.6	0.0	8.3e-64	215.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
DUF4295	PF14128.6	gi|384434361|ref|YP_005643719.1|	-	0.064	13.1	0.1	0.42	10.5	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4295)
UPF0051	PF01458.17	gi|384434362|ref|YP_005643720.1|	-	1.5e-41	142.5	1.5	2e-41	142.1	1.5	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
Ribonuc_red_lgC	PF02867.15	gi|384434363|ref|YP_005643721.1|	-	2.1e-182	607.3	0.0	2.9e-182	606.9	0.0	1.2	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|384434363|ref|YP_005643721.1|	-	1.2e-26	92.6	0.1	2.8e-26	91.3	0.1	1.7	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.16	gi|384434363|ref|YP_005643721.1|	-	1.2e-09	38.5	2.5	3.2e-09	37.2	1.0	2.6	2	0	0	2	2	2	1	ATP	cone	domain
DUF3029	PF11230.8	gi|384434363|ref|YP_005643721.1|	-	0.088	11.2	0.0	0.14	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3029)
HTH_37	PF13744.6	gi|384434364|ref|YP_005643722.1|	-	0.0016	18.4	0.0	0.0025	17.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|384434364|ref|YP_005643722.1|	-	0.012	15.7	0.2	0.019	15.0	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix
DUF483	PF04467.12	gi|384434364|ref|YP_005643722.1|	-	0.022	14.8	0.1	0.026	14.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF483)
UPF0175	PF03683.13	gi|384434364|ref|YP_005643722.1|	-	0.022	14.5	0.0	0.031	14.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
GatB_N	PF02934.15	gi|384434366|ref|YP_005643724.1|	-	5e-74	249.1	0.0	7.4e-74	248.6	0.0	1.3	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|384434366|ref|YP_005643724.1|	-	1.9e-28	99.2	4.6	2.5e-28	98.8	3.3	1.9	2	0	0	2	2	2	1	GatB	domain
GAD	PF02938.14	gi|384434366|ref|YP_005643724.1|	-	1.6e-10	41.1	0.5	6.6e-10	39.1	0.0	2.3	2	1	0	2	2	2	1	GAD	domain
YqeY	PF09424.10	gi|384434366|ref|YP_005643724.1|	-	2.7e-05	24.3	1.8	6.3e-05	23.1	1.8	1.7	1	0	0	1	1	1	1	Yqey-like	protein
Ctf8	PF09696.10	gi|384434366|ref|YP_005643724.1|	-	0.34	11.2	2.7	0.41	11.0	0.0	2.4	3	0	0	3	3	3	0	Ctf8
Asparaginase	PF00710.20	gi|384434367|ref|YP_005643725.1|	-	9.7e-60	201.4	0.1	1.4e-59	200.9	0.1	1.2	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|384434367|ref|YP_005643725.1|	-	9.8e-32	109.6	0.0	1.6e-30	105.7	0.0	2.2	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|384434367|ref|YP_005643725.1|	-	3.2e-19	68.0	2.9	6.3e-19	67.0	2.9	1.5	1	0	0	1	1	1	1	GatD	N-terminal	domain
Gly_reductase	PF09338.11	gi|384434367|ref|YP_005643725.1|	-	0.053	11.9	0.0	0.094	11.1	0.0	1.3	1	0	0	1	1	1	0	Glycine/sarcosine/betaine	reductase	component	B	subunits
SKI	PF01202.22	gi|384434367|ref|YP_005643725.1|	-	0.064	13.4	0.1	0.52	10.4	0.1	2.2	2	0	0	2	2	2	0	Shikimate	kinase
CDC48_N	PF02359.18	gi|384434367|ref|YP_005643725.1|	-	0.13	12.5	0.0	0.32	11.2	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Ribosomal_S30	PF04758.14	gi|384434368|ref|YP_005643726.1|	-	5.5e-14	52.1	6.1	6.2e-14	51.9	6.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S30
Sas10	PF09368.10	gi|384434368|ref|YP_005643726.1|	-	0.18	12.3	7.9	0.32	11.5	7.7	1.6	1	1	1	2	2	2	0	Sas10	C-terminal	domain
Nop	PF01798.18	gi|384434369|ref|YP_005643727.1|	-	1.6e-73	247.0	0.0	2.2e-73	246.5	0.0	1.2	1	0	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
DUF4763	PF15960.5	gi|384434369|ref|YP_005643727.1|	-	0.032	13.5	1.7	0.061	12.6	1.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4763)
DUF3215	PF11503.8	gi|384434369|ref|YP_005643727.1|	-	0.098	12.5	0.1	1.3	9.0	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3215)
DUF573	PF04504.14	gi|384434369|ref|YP_005643727.1|	-	0.27	11.9	1.3	2	9.1	0.2	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function,	DUF573
Fibrillarin	PF01269.17	gi|384434370|ref|YP_005643728.1|	-	2.1e-101	337.8	0.1	2.4e-101	337.6	0.1	1.0	1	0	0	1	1	1	1	Fibrillarin
DUF1447	PF07288.11	gi|384434370|ref|YP_005643728.1|	-	0.0022	18.0	0.0	0.096	12.7	0.0	2.9	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1447)
Tudor_2	PF18104.1	gi|384434370|ref|YP_005643728.1|	-	0.062	13.0	0.3	0.38	10.5	0.1	2.4	2	0	0	2	2	2	0	Jumonji	domain-containing	protein	2A	Tudor	domain
PCMT	PF01135.19	gi|384434370|ref|YP_005643728.1|	-	0.094	12.5	0.1	0.19	11.5	0.0	1.5	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.10	gi|384434370|ref|YP_005643728.1|	-	0.15	11.7	0.1	0.63	9.7	0.1	1.9	1	1	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
DUF61	PF01886.16	gi|384434371|ref|YP_005643729.1|	-	1.8e-24	86.2	0.8	2.1e-24	86.0	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF61
DUF365	PF04033.12	gi|384434371|ref|YP_005643729.1|	-	0.073	13.4	0.2	1.4	9.2	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF365)
HTH_3	PF01381.22	gi|384434372|ref|YP_005643730.1|	-	1e-11	44.7	0.0	8e-11	41.8	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix
HTH_31	PF13560.6	gi|384434372|ref|YP_005643730.1|	-	2e-06	28.1	0.0	6.2e-06	26.5	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|384434372|ref|YP_005643730.1|	-	0.00012	21.8	0.0	0.003	17.3	0.0	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_19	PF12844.7	gi|384434372|ref|YP_005643730.1|	-	0.00021	21.3	1.6	0.00067	19.6	0.0	2.7	4	1	1	5	5	5	1	Helix-turn-helix	domain
MerR	PF00376.23	gi|384434372|ref|YP_005643730.1|	-	0.00048	19.8	0.0	0.0016	18.2	0.0	1.9	1	0	0	1	1	1	1	MerR	family	regulatory	protein
HTH_25	PF13413.6	gi|384434372|ref|YP_005643730.1|	-	0.0022	17.8	0.1	0.087	12.7	0.0	2.9	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384434372|ref|YP_005643730.1|	-	0.0077	16.4	0.0	0.024	14.8	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
PASTA	PF03793.19	gi|384434372|ref|YP_005643730.1|	-	0.0088	15.9	0.3	0.3	11.0	0.1	2.7	2	0	0	2	2	2	1	PASTA	domain
HTH_6	PF01418.17	gi|384434372|ref|YP_005643730.1|	-	0.011	15.7	0.0	0.11	12.5	0.0	2.6	3	0	0	3	3	3	0	Helix-turn-helix	domain,	rpiR	family
HTH_7	PF02796.15	gi|384434372|ref|YP_005643730.1|	-	0.012	15.7	0.4	0.16	12.1	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	resolvase
HTH_22	PF13309.6	gi|384434372|ref|YP_005643730.1|	-	0.018	15.1	0.1	0.12	12.4	0.0	2.4	2	0	0	2	2	2	0	HTH	domain
HTH_29	PF13551.6	gi|384434372|ref|YP_005643730.1|	-	0.049	13.7	0.0	0.13	12.3	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
GP3_package	PF16677.5	gi|384434372|ref|YP_005643730.1|	-	0.049	13.8	0.0	0.14	12.3	0.0	1.8	1	0	0	1	1	1	0	DNA-packaging	protein	gp3
TraK	PF06586.11	gi|384434372|ref|YP_005643730.1|	-	0.056	13.1	1.5	0.16	11.6	1.5	1.8	1	1	0	1	1	1	0	TraK	protein
MerR_1	PF13411.6	gi|384434372|ref|YP_005643730.1|	-	0.072	13.2	0.0	0.68	10.1	0.0	2.7	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_26	PF13443.6	gi|384434372|ref|YP_005643730.1|	-	0.094	13.2	0.0	0.35	11.3	0.0	1.9	2	0	0	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
TRM	PF02005.16	gi|384434373|ref|YP_005643731.1|	-	3.6e-94	316.0	0.0	4e-94	315.9	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Met_10	PF02475.16	gi|384434373|ref|YP_005643731.1|	-	0.0064	16.3	0.0	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
zf-CCHC_5	PF14787.6	gi|384434373|ref|YP_005643731.1|	-	0.067	12.9	0.6	0.18	11.5	0.6	1.7	1	0	0	1	1	1	0	GAG-polyprotein	viral	zinc-finger
Rubredoxin_2	PF18073.1	gi|384434373|ref|YP_005643731.1|	-	0.22	11.3	3.1	0.55	10.0	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn-C2H2_12	PF18112.1	gi|384434373|ref|YP_005643731.1|	-	0.25	11.8	0.3	0.25	11.8	0.3	2.0	2	0	0	2	2	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
ShK	PF01549.24	gi|384434373|ref|YP_005643731.1|	-	0.78	10.3	3.8	1.5	9.4	3.8	1.5	1	0	0	1	1	1	0	ShK	domain-like
Cys_rich_CPCC	PF14206.6	gi|384434373|ref|YP_005643731.1|	-	0.97	9.3	5.0	2.5	8.0	5.0	1.6	1	0	0	1	1	1	0	Cysteine-rich	CPCC
RNA_pol_Rpc34	PF05158.12	gi|384434374|ref|YP_005643732.1|	-	1.7e-10	40.8	4.4	6.9e-07	28.9	2.6	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
HTH_24	PF13412.6	gi|384434374|ref|YP_005643732.1|	-	3.3e-06	26.6	1.5	1.4e-05	24.5	0.4	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|384434374|ref|YP_005643732.1|	-	0.00027	20.7	0.1	0.00084	19.2	0.0	1.7	2	0	0	2	2	2	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|384434374|ref|YP_005643732.1|	-	0.0003	20.9	0.3	0.00043	20.4	0.3	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_3	PF01381.22	gi|384434374|ref|YP_005643732.1|	-	0.00095	19.2	1.2	0.0058	16.7	0.3	2.3	3	0	0	3	3	3	1	Helix-turn-helix
MarR	PF01047.22	gi|384434374|ref|YP_005643732.1|	-	0.0011	18.9	0.2	0.0022	17.9	0.2	1.5	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|384434374|ref|YP_005643732.1|	-	0.0014	18.5	0.0	0.0029	17.5	0.0	1.5	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
RPA_C	PF08784.11	gi|384434374|ref|YP_005643732.1|	-	0.0054	17.4	0.1	0.0083	16.8	0.1	1.3	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
TFIIE_alpha	PF02002.17	gi|384434374|ref|YP_005643732.1|	-	0.0094	15.8	0.2	0.013	15.4	0.2	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
RepC	PF06504.11	gi|384434374|ref|YP_005643732.1|	-	0.018	14.3	0.1	0.024	13.9	0.1	1.2	1	0	0	1	1	1	0	Replication	protein	C	(RepC)
HTH_36	PF13730.6	gi|384434374|ref|YP_005643732.1|	-	0.031	14.2	0.1	0.06	13.3	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|384434374|ref|YP_005643732.1|	-	0.034	14.2	0.9	0.083	12.9	0.9	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|384434374|ref|YP_005643732.1|	-	0.039	13.8	0.2	0.065	13.1	0.2	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.16	gi|384434374|ref|YP_005643732.1|	-	0.059	12.9	0.4	0.1	12.1	0.4	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
PglZ	PF08665.12	gi|384434374|ref|YP_005643732.1|	-	0.064	13.3	0.0	0.11	12.6	0.0	1.3	1	1	0	1	1	1	0	PglZ	domain
Rio2_N	PF09202.11	gi|384434374|ref|YP_005643732.1|	-	0.15	12.3	0.1	0.3	11.3	0.1	1.5	1	1	0	1	1	1	0	Rio2,	N-terminal
TFIIB	PF00382.19	gi|384434375|ref|YP_005643733.1|	-	1.7e-21	76.0	0.0	1.3e-11	44.3	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|384434375|ref|YP_005643733.1|	-	1.1e-15	56.8	1.0	1.7e-15	56.2	1.0	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|384434375|ref|YP_005643733.1|	-	0.0038	16.7	0.0	0.0079	15.7	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
Ntox8	PF15545.6	gi|384434375|ref|YP_005643733.1|	-	0.029	14.5	0.1	2.2	8.4	0.1	2.4	2	0	0	2	2	2	0	Bacterial	toxin	8
PhnA_Zn_Ribbon	PF08274.12	gi|384434375|ref|YP_005643733.1|	-	0.067	13.2	1.6	0.11	12.5	1.6	1.3	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
Sigma70_r4_2	PF08281.12	gi|384434375|ref|YP_005643733.1|	-	0.075	12.7	0.0	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
zf-RRN7	PF11781.8	gi|384434375|ref|YP_005643733.1|	-	0.084	12.6	0.7	0.14	11.9	0.7	1.3	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-ribbon_3	PF13248.6	gi|384434375|ref|YP_005643733.1|	-	0.16	11.4	0.9	7.8	6.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ACC	PF17848.1	gi|384434375|ref|YP_005643733.1|	-	0.48	10.6	5.5	4.9	7.3	5.5	2.4	1	1	0	1	1	1	0	Acetyl-coA	carboxylase	zinc	finger	domain
DUF2089	PF09862.9	gi|384434375|ref|YP_005643733.1|	-	0.66	10.0	0.0	0.66	10.0	0.0	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2089)
FAM76	PF16046.5	gi|384434375|ref|YP_005643733.1|	-	5.2	6.3	5.2	9.3	5.5	1.2	2.2	2	0	0	2	2	2	0	FAM76	protein
Gar1	PF04410.14	gi|384434376|ref|YP_005643734.1|	-	3.9e-08	33.2	0.1	4.9e-08	32.9	0.1	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
PRC	PF05239.16	gi|384434376|ref|YP_005643734.1|	-	2.4e-06	27.5	0.5	3e-06	27.2	0.1	1.5	2	0	0	2	2	2	1	PRC-barrel	domain
TMF_DNA_bd	PF12329.8	gi|384434377|ref|YP_005643735.1|	-	0.00021	21.2	16.5	0.00021	21.2	16.5	5.3	3	1	2	5	5	3	1	TATA	element	modulatory	factor	1	DNA	binding
Cluap1	PF10234.9	gi|384434377|ref|YP_005643735.1|	-	0.0022	17.4	22.7	0.0022	17.4	22.7	2.7	1	1	2	3	3	3	1	Clusterin-associated	protein-1
Baculo_PEP_C	PF04513.12	gi|384434377|ref|YP_005643735.1|	-	0.0071	16.4	11.2	0.0071	16.4	11.2	3.3	1	1	2	3	3	3	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4201	PF13870.6	gi|384434377|ref|YP_005643735.1|	-	0.0081	15.9	6.7	0.0081	15.9	6.7	4.1	1	1	3	4	4	4	1	Domain	of	unknown	function	(DUF4201)
HsbA	PF12296.8	gi|384434377|ref|YP_005643735.1|	-	0.014	15.8	6.7	9.2	6.7	0.2	4.1	3	1	2	5	5	4	0	Hydrophobic	surface	binding	protein	A
T3SSipB	PF16535.5	gi|384434377|ref|YP_005643735.1|	-	0.02	15.4	3.6	0.02	15.4	3.6	2.7	1	1	2	3	3	3	0	Type	III	cell	invasion	protein	SipB
Sugarporin_N	PF11471.8	gi|384434377|ref|YP_005643735.1|	-	0.043	13.8	6.4	0.89	9.6	2.5	3.5	2	1	1	3	3	3	0	Maltoporin	periplasmic	N-terminal	extension
DUF1664	PF07889.12	gi|384434377|ref|YP_005643735.1|	-	0.084	12.9	41.0	1.9	8.5	7.5	4.2	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Atg14	PF10186.9	gi|384434377|ref|YP_005643735.1|	-	0.1	11.7	54.7	2.2	7.3	33.1	2.8	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
MAP65_ASE1	PF03999.12	gi|384434377|ref|YP_005643735.1|	-	0.11	11.2	52.6	1.5	7.4	16.0	2.5	1	1	1	2	2	2	0	Microtubule	associated	protein	(MAP65/ASE1	family)
LPP	PF04728.13	gi|384434377|ref|YP_005643735.1|	-	0.12	12.8	19.3	0.08	13.3	2.1	5.1	3	2	1	4	4	3	0	Lipoprotein	leucine-zipper
Spc7	PF08317.11	gi|384434377|ref|YP_005643735.1|	-	0.26	10.1	61.7	0.64	8.8	16.7	3.0	1	1	2	3	3	3	0	Spc7	kinetochore	protein
DUF948	PF06103.11	gi|384434377|ref|YP_005643735.1|	-	0.31	11.3	21.9	0.43	10.9	1.4	4.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
UPF0242	PF06785.11	gi|384434377|ref|YP_005643735.1|	-	0.34	11.0	59.7	2.3	8.3	14.4	3.5	1	1	2	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Ocular_alb	PF02101.15	gi|384434377|ref|YP_005643735.1|	-	0.45	9.4	0.8	0.87	8.4	0.8	1.4	1	0	0	1	1	1	0	Ocular	albinism	type	1	protein
DUF3584	PF12128.8	gi|384434377|ref|YP_005643735.1|	-	0.45	8.0	40.1	0.66	7.4	40.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF2203	PF09969.9	gi|384434377|ref|YP_005643735.1|	-	1.6	9.5	38.0	1.1	9.9	8.9	4.4	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
MAD	PF05557.13	gi|384434377|ref|YP_005643735.1|	-	1.7	6.9	59.9	5.9	5.1	35.6	2.3	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
Tup_N	PF08581.10	gi|384434377|ref|YP_005643735.1|	-	1.7	9.0	45.8	0.16	12.3	7.4	5.7	1	1	4	5	5	5	0	Tup	N-terminal
TPR_MLP1_2	PF07926.12	gi|384434377|ref|YP_005643735.1|	-	2.4	8.2	53.3	1.3	9.1	13.9	4.4	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
APG6_N	PF17675.1	gi|384434377|ref|YP_005643735.1|	-	3	8.4	55.2	0.14	12.6	14.8	3.7	1	1	3	4	4	4	0	Apg6	coiled-coil	region
Fez1	PF06818.15	gi|384434377|ref|YP_005643735.1|	-	3.5	8.0	47.9	6.2	7.2	21.9	2.3	1	1	1	2	2	2	0	Fez1
Lipoprotein_7	PF01540.16	gi|384434377|ref|YP_005643735.1|	-	4.1	6.6	47.9	0.31	10.3	34.2	2.9	1	1	1	2	2	2	0	Adhesin	lipoprotein
CREPT	PF16566.5	gi|384434377|ref|YP_005643735.1|	-	4.8	7.4	38.4	0.055	13.6	17.3	3.0	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
TMPIT	PF07851.13	gi|384434377|ref|YP_005643735.1|	-	5.5	6.1	43.2	1.3	8.2	10.6	3.2	1	1	1	3	3	3	0	TMPIT-like	protein
CALCOCO1	PF07888.11	gi|384434377|ref|YP_005643735.1|	-	5.8	5.7	48.9	7.8	5.2	14.3	2.1	1	1	1	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Laminin_I	PF06008.14	gi|384434377|ref|YP_005643735.1|	-	8.2	6.1	45.9	20	4.8	18.4	2.3	1	1	1	2	2	2	0	Laminin	Domain	I
kleA_kleC	PF17383.2	gi|384434377|ref|YP_005643735.1|	-	8.7	6.8	18.0	0.98	9.8	0.4	4.9	1	1	4	5	5	5	0	Uncharacterized	KorC	regulated	protein	A
DUF373	PF04123.13	gi|384434378|ref|YP_005643736.1|	-	5.6e-85	285.7	22.9	6.6e-85	285.5	22.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
DUF5622	PF18533.1	gi|384434379|ref|YP_005643737.1|	-	1.1e-25	89.5	4.9	1.2e-25	89.4	4.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5622)
TRAM	PF01938.20	gi|384434379|ref|YP_005643737.1|	-	0.047	13.7	0.1	0.085	12.9	0.0	1.6	1	1	1	2	2	2	0	TRAM	domain
BcrAD_BadFG	PF01869.20	gi|384434380|ref|YP_005643738.1|	-	3.8e-17	62.6	0.0	5.1e-17	62.2	0.0	1.0	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
DUF4468	PF14730.6	gi|384434380|ref|YP_005643738.1|	-	0.06	13.6	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4468)	with	TBP-like	fold
Pan_kinase	PF03309.14	gi|384434380|ref|YP_005643738.1|	-	0.089	12.6	0.0	0.19	11.6	0.0	1.6	1	0	0	1	1	1	0	Type	III	pantothenate	kinase
DOG1	PF14144.6	gi|384434380|ref|YP_005643738.1|	-	0.1	12.9	0.0	0.28	11.4	0.0	1.7	2	0	0	2	2	2	0	Seed	dormancy	control
DUF3658	PF12395.8	gi|384434380|ref|YP_005643738.1|	-	0.1	12.5	0.0	0.25	11.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function
TBP	PF00352.21	gi|384434381|ref|YP_005643739.1|	-	8e-58	192.4	0.2	7e-30	102.8	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|384434381|ref|YP_005643739.1|	-	1.6e-08	34.5	0.0	0.0033	17.5	0.0	2.4	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
RTT107_BRCT_5	PF16770.5	gi|384434381|ref|YP_005643739.1|	-	0.011	15.6	0.3	0.14	12.1	0.2	2.0	2	0	0	2	2	2	0	Regulator	of	Ty1	transposition	protein	107	BRCT	domain
Metallophos	PF00149.28	gi|384434382|ref|YP_005643740.1|	-	9.3e-08	32.8	0.1	1.3e-07	32.3	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384434382|ref|YP_005643740.1|	-	6.1e-06	26.5	0.1	1e-05	25.8	0.1	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Ribosomal_L4	PF00573.22	gi|384434382|ref|YP_005643740.1|	-	0.019	14.6	0.3	0.03	14.0	0.3	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L4/L1	family
Spo7	PF03907.13	gi|384434382|ref|YP_005643740.1|	-	0.047	13.2	0.1	0.066	12.7	0.1	1.2	1	0	0	1	1	1	0	Spo7-like	protein
Hydant_A_N	PF05378.13	gi|384434382|ref|YP_005643740.1|	-	0.085	12.6	0.2	0.16	11.6	0.1	1.5	2	0	0	2	2	2	0	Hydantoinase/oxoprolinase	N-terminal	region
HTH_44	PF14641.6	gi|384434382|ref|YP_005643740.1|	-	0.096	13.1	0.1	0.15	12.5	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	DNA-binding	domain	of	SPT6
TP_methylase	PF00590.20	gi|384434383|ref|YP_005643741.1|	-	7e-22	78.4	0.0	9e-22	78.1	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF357	PF04010.13	gi|384434384|ref|YP_005643742.1|	-	2.1e-15	56.5	0.8	5.2e-15	55.3	0.8	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
CTP_transf_like	PF01467.26	gi|384434384|ref|YP_005643742.1|	-	3.9e-13	49.8	0.0	7.2e-13	48.9	0.0	1.4	1	0	0	1	1	1	1	Cytidylyltransferase-like
RPN7	PF10602.9	gi|384434384|ref|YP_005643742.1|	-	0.025	14.3	0.7	0.043	13.5	0.7	1.3	1	0	0	1	1	1	0	26S	proteasome	subunit	RPN7
Radical_SAM	PF04055.21	gi|384434384|ref|YP_005643742.1|	-	0.11	12.9	0.7	0.2	12.0	0.4	1.8	1	1	1	2	2	2	0	Radical	SAM	superfamily
DASH_Dad4	PF08650.10	gi|384434384|ref|YP_005643742.1|	-	0.16	12.0	0.3	1.5	8.8	0.1	2.4	3	0	0	3	3	3	0	DASH	complex	subunit	Dad4
CTP-dep_RFKase	PF01982.16	gi|384434385|ref|YP_005643743.1|	-	1.6e-40	138.0	0.0	2.2e-40	137.5	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MazE_antitoxin	PF04014.18	gi|384434385|ref|YP_005643743.1|	-	0.019	14.9	0.1	0.12	12.3	0.0	2.3	2	0	0	2	2	2	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Wyosine_form	PF08608.12	gi|384434386|ref|YP_005643744.1|	-	7.2e-23	80.7	0.0	2.9e-22	78.8	0.0	2.1	2	0	0	2	2	2	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|384434386|ref|YP_005643744.1|	-	5e-21	75.8	0.1	1.5e-20	74.2	0.0	1.8	2	1	0	2	2	2	1	Radical	SAM	superfamily
HAD	PF12710.7	gi|384434386|ref|YP_005643744.1|	-	0.14	12.6	0.0	4.3	7.7	0.0	2.3	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Amidase	PF01425.21	gi|384434387|ref|YP_005643745.1|	-	8e-143	476.6	0.0	9.1e-143	476.5	0.0	1.0	1	0	0	1	1	1	1	Amidase
Glu-tRNAGln	PF02686.15	gi|384434388|ref|YP_005643746.1|	-	3.1e-19	69.0	0.1	4.7e-19	68.4	0.1	1.3	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
RIO1	PF01163.22	gi|384434388|ref|YP_005643746.1|	-	0.1	12.2	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	RIO1	family
ERCC3_RAD25_C	PF16203.5	gi|384434390|ref|YP_005643748.1|	-	7.7e-23	81.0	0.3	1.9e-22	79.7	0.3	1.6	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|384434390|ref|YP_005643748.1|	-	9e-23	81.1	0.2	2.9e-22	79.5	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|384434390|ref|YP_005643748.1|	-	5.5e-21	75.0	1.5	4.3e-20	72.1	0.1	2.7	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|384434390|ref|YP_005643748.1|	-	4.9e-07	29.7	0.2	4.6e-06	26.5	0.0	2.7	3	2	0	3	3	3	1	DEAD/DEAH	box	helicase
DDE_Tnp_IS66_C	PF13817.6	gi|384434390|ref|YP_005643748.1|	-	0.00049	20.3	0.1	0.016	15.4	0.0	2.8	2	0	0	2	2	2	1	IS66	C-terminal	element
Sigma70_ECF	PF07638.11	gi|384434390|ref|YP_005643748.1|	-	0.006	16.5	0.1	0.013	15.4	0.1	1.5	1	0	0	1	1	1	1	ECF	sigma	factor
AAA_11	PF13086.6	gi|384434390|ref|YP_005643748.1|	-	0.16	11.8	0.3	18	5.0	0.0	3.0	3	0	0	3	3	3	0	AAA	domain
Alba	PF01918.21	gi|384434394|ref|YP_005643752.1|	-	2e-22	78.8	0.8	2.7e-22	78.3	0.8	1.2	1	0	0	1	1	1	1	Alba
DUF3954	PF13128.6	gi|384434394|ref|YP_005643752.1|	-	0.053	13.3	0.4	0.29	11.0	0.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3954)
Topoisom_bac	PF01131.20	gi|384434395|ref|YP_005643753.1|	-	4e-86	289.6	0.5	6.2e-86	289.0	0.5	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.22	gi|384434395|ref|YP_005643753.1|	-	7.9e-25	87.1	1.6	1.5e-23	82.9	0.0	3.4	3	0	0	3	3	3	1	Toprim	domain
zf_Rg	PF17915.1	gi|384434395|ref|YP_005643753.1|	-	5.2e-15	54.6	1.1	5.2e-15	54.6	1.1	1.9	2	0	0	2	2	2	1	Reverse	gyrase	zinc	finger
DEAD	PF00270.29	gi|384434395|ref|YP_005643753.1|	-	1.1e-09	38.4	0.9	5.3e-08	32.8	0.9	3.3	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|384434395|ref|YP_005643753.1|	-	0.0012	18.9	1.8	0.0081	16.2	0.1	3.0	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
NOB1_Zn_bind	PF08772.11	gi|384434395|ref|YP_005643753.1|	-	0.0089	16.2	0.5	0.12	12.6	0.0	2.6	2	0	0	2	2	2	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF35_N	PF12172.8	gi|384434395|ref|YP_005643753.1|	-	0.02	14.8	1.0	0.4	10.6	0.0	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.19	gi|384434395|ref|YP_005643753.1|	-	0.021	14.8	2.2	0.065	13.3	0.2	2.6	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
AAA_22	PF13401.6	gi|384434395|ref|YP_005643753.1|	-	0.026	14.8	0.0	0.12	12.7	0.0	2.1	1	0	0	1	1	1	0	AAA	domain
Toprim_4	PF13662.6	gi|384434395|ref|YP_005643753.1|	-	0.028	14.9	0.0	0.14	12.7	0.0	2.2	1	0	0	1	1	1	0	Toprim	domain
TackOD1	PF18551.1	gi|384434395|ref|YP_005643753.1|	-	0.039	13.6	0.8	0.19	11.4	0.0	2.4	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
Zn-ribbon_8	PF09723.10	gi|384434395|ref|YP_005643753.1|	-	0.11	12.6	3.4	0.82	9.8	0.7	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|384434395|ref|YP_005643753.1|	-	0.17	11.3	8.4	1.4	8.5	1.5	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
PspA_IM30	PF04012.12	gi|384434395|ref|YP_005643753.1|	-	0.18	11.4	0.4	0.37	10.3	0.4	1.4	1	0	0	1	1	1	0	PspA/IM30	family
COG2	PF06148.11	gi|384434395|ref|YP_005643753.1|	-	0.23	11.5	1.2	1.1	9.3	0.2	2.4	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
zf-C2HC5	PF06221.13	gi|384434395|ref|YP_005643753.1|	-	0.84	9.7	4.8	0.18	11.8	0.2	2.1	2	0	0	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|384434395|ref|YP_005643753.1|	-	1.7	8.7	5.4	1.5	8.9	0.4	2.3	2	0	0	2	2	2	0	Double	zinc	ribbon
DUF1272	PF06906.11	gi|384434395|ref|YP_005643753.1|	-	1.8	8.7	4.2	1.1	9.5	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
TF_Zn_Ribbon	PF08271.12	gi|384434395|ref|YP_005643753.1|	-	1.9	8.1	4.0	14	5.3	0.1	2.6	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C3HC4_3	PF13920.6	gi|384434395|ref|YP_005643753.1|	-	3.3	7.6	4.1	8	6.4	1.6	2.3	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Alba	PF01918.21	gi|384434396|ref|YP_005643754.1|	-	4e-16	58.6	0.4	4.8e-16	58.3	0.4	1.1	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.8	gi|384434396|ref|YP_005643754.1|	-	0.0064	16.4	0.0	0.01	15.8	0.0	1.3	1	1	0	1	1	1	1	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
DEAD	PF00270.29	gi|384434397|ref|YP_005643755.1|	-	3.7e-27	95.2	0.0	1.6e-26	93.2	0.0	2.1	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|384434397|ref|YP_005643755.1|	-	1.4e-13	51.1	0.9	2.3e-11	44.0	0.0	3.8	4	0	0	4	4	4	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|384434397|ref|YP_005643755.1|	-	2.8e-07	30.7	0.0	1.3e-06	28.5	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD_assoc	PF08494.11	gi|384434397|ref|YP_005643755.1|	-	1.2e-06	28.5	0.0	0.052	13.4	0.0	3.1	2	1	1	3	3	3	2	DEAD/H	associated
HTH_20	PF12840.7	gi|384434397|ref|YP_005643755.1|	-	0.0019	18.2	0.2	0.055	13.5	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384434397|ref|YP_005643755.1|	-	0.0021	18.2	0.0	1.7	8.9	0.0	3.6	3	0	0	3	3	3	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|384434397|ref|YP_005643755.1|	-	0.0022	17.8	0.5	0.0092	15.8	0.0	2.3	3	0	0	3	3	2	1	Bacterial	regulatory	protein,	arsR	family
SNF2_N	PF00176.23	gi|384434397|ref|YP_005643755.1|	-	0.013	14.2	0.0	0.022	13.5	0.0	1.3	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
ANAPC2	PF08672.11	gi|384434397|ref|YP_005643755.1|	-	0.014	15.9	1.0	4.4	7.9	0.0	3.6	3	0	0	3	3	2	0	Anaphase	promoting	complex	(APC)	subunit	2
AAA_22	PF13401.6	gi|384434397|ref|YP_005643755.1|	-	0.085	13.1	0.1	2.3	8.5	0.1	2.8	1	1	0	1	1	1	0	AAA	domain
HTH_11	PF08279.12	gi|384434397|ref|YP_005643755.1|	-	0.091	12.7	1.3	0.58	10.1	0.1	3.1	4	0	0	4	4	4	0	HTH	domain
HTH_17	PF12728.7	gi|384434397|ref|YP_005643755.1|	-	0.26	11.5	1.3	1.9	8.7	0.0	3.0	3	0	0	3	3	3	0	Helix-turn-helix	domain
zf-C2H2_6	PF13912.6	gi|384434398|ref|YP_005643756.1|	-	0.0098	15.9	0.1	0.02	14.9	0.1	1.5	1	0	0	1	1	1	1	C2H2-type	zinc	finger
SH3BP5	PF05276.14	gi|384434398|ref|YP_005643756.1|	-	0.039	13.8	1.1	0.046	13.5	1.1	1.0	1	0	0	1	1	1	0	SH3	domain-binding	protein	5	(SH3BP5)
zf-C2H2	PF00096.26	gi|384434398|ref|YP_005643756.1|	-	0.054	14.0	0.5	0.12	12.9	0.5	1.6	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2HC_2	PF13913.6	gi|384434398|ref|YP_005643756.1|	-	0.35	10.8	0.5	0.35	10.8	0.5	2.0	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
RtcB	PF01139.17	gi|384434399|ref|YP_005643757.1|	-	7.1e-161	536.0	0.0	8e-161	535.8	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DS	PF01916.17	gi|384434400|ref|YP_005643758.1|	-	1.2e-98	329.9	0.0	1.4e-98	329.7	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Topo-VIb_trans	PF09239.11	gi|384434401|ref|YP_005643759.1|	-	1.8e-66	222.9	0.3	3.3e-66	222.0	0.3	1.5	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c_3	PF13589.6	gi|384434401|ref|YP_005643759.1|	-	5.2e-12	45.8	0.0	1.8e-11	44.0	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|384434401|ref|YP_005643759.1|	-	1.3e-11	44.9	0.0	2.5e-11	44.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.11	gi|384434401|ref|YP_005643759.1|	-	5.4e-07	28.7	0.0	5.4e-07	28.7	0.0	2.1	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
Ribosomal_S13	PF00416.22	gi|384434401|ref|YP_005643759.1|	-	7.5e-05	23.1	0.3	0.00018	21.9	0.0	1.8	2	0	0	2	2	2	1	Ribosomal	protein	S13/S18
H2TH	PF06831.14	gi|384434401|ref|YP_005643759.1|	-	0.056	13.4	0.1	0.25	11.4	0.0	2.0	2	0	0	2	2	2	0	Formamidopyrimidine-DNA	glycosylase	H2TH	domain
TP6A_N	PF04406.14	gi|384434402|ref|YP_005643760.1|	-	1.1e-20	73.4	0.1	1.7e-20	72.7	0.1	1.3	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
GTP_EFTU_D4	PF14578.6	gi|384434402|ref|YP_005643760.1|	-	0.047	13.6	0.1	0.095	12.6	0.1	1.4	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
eIF-5a	PF01287.20	gi|384434403|ref|YP_005643761.1|	-	5.1e-06	26.5	0.3	1e-05	25.5	0.3	1.6	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.12	gi|384434403|ref|YP_005643761.1|	-	2.5e-05	24.2	0.1	5.9e-05	23.0	0.1	1.6	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.20	gi|384434403|ref|YP_005643761.1|	-	0.12	12.4	0.1	0.23	11.5	0.1	1.5	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	OB	domain
SRP54	PF00448.22	gi|384434404|ref|YP_005643762.1|	-	3.2e-72	242.3	0.5	4.4e-72	241.8	0.5	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|384434404|ref|YP_005643762.1|	-	9.4e-28	96.7	0.1	1.5e-25	89.7	0.0	2.6	2	0	0	2	2	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|384434404|ref|YP_005643762.1|	-	2.3e-15	56.6	0.2	8.3e-15	54.8	0.2	2.1	1	0	0	1	1	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|384434404|ref|YP_005643762.1|	-	1.3e-05	25.2	0.0	3.5e-05	23.9	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|384434404|ref|YP_005643762.1|	-	0.00012	21.6	0.1	0.00022	20.8	0.1	1.3	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
cobW	PF02492.19	gi|384434404|ref|YP_005643762.1|	-	0.00016	21.3	0.3	0.0011	18.6	0.3	2.0	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|384434404|ref|YP_005643762.1|	-	0.00062	19.1	0.0	0.0011	18.4	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_22	PF13401.6	gi|384434404|ref|YP_005643762.1|	-	0.00083	19.6	0.0	0.0041	17.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|384434404|ref|YP_005643762.1|	-	0.00091	19.0	0.2	0.0038	17.0	0.1	2.0	2	1	0	2	2	2	1	AAA	domain
MobB	PF03205.14	gi|384434404|ref|YP_005643762.1|	-	0.00097	19.0	0.2	0.0026	17.7	0.0	1.8	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_31	PF13614.6	gi|384434404|ref|YP_005643762.1|	-	0.0012	18.8	0.4	0.0047	16.9	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|384434404|ref|YP_005643762.1|	-	0.0018	17.3	0.0	0.005	15.9	0.0	1.7	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_17	PF13207.6	gi|384434404|ref|YP_005643762.1|	-	0.003	18.0	0.4	0.013	15.9	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|384434404|ref|YP_005643762.1|	-	0.0052	17.0	0.0	0.013	15.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384434404|ref|YP_005643762.1|	-	0.0054	17.1	0.0	0.013	15.9	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.6	gi|384434404|ref|YP_005643762.1|	-	0.0099	16.4	0.0	0.023	15.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|384434404|ref|YP_005643762.1|	-	0.035	14.4	0.0	0.067	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|384434404|ref|YP_005643762.1|	-	0.041	13.7	0.1	0.13	12.1	0.1	1.8	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
APS_kinase	PF01583.20	gi|384434404|ref|YP_005643762.1|	-	0.049	13.5	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NTPase_1	PF03266.15	gi|384434404|ref|YP_005643762.1|	-	0.05	13.5	0.7	0.31	10.9	0.0	2.4	2	0	0	2	2	2	0	NTPase
AAA_5	PF07728.14	gi|384434404|ref|YP_005643762.1|	-	0.071	13.1	0.0	0.21	11.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|384434404|ref|YP_005643762.1|	-	0.074	13.5	0.6	0.7	10.3	0.5	2.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PFOR_II	PF17147.4	gi|384434404|ref|YP_005643762.1|	-	0.091	13.1	0.0	0.82	10.0	0.0	2.6	1	1	0	2	2	2	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
ResIII	PF04851.15	gi|384434404|ref|YP_005643762.1|	-	0.12	12.4	1.3	0.89	9.5	0.6	2.3	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Thymidylate_kin	PF02223.17	gi|384434404|ref|YP_005643762.1|	-	0.12	12.1	0.3	0.82	9.3	0.2	2.5	2	0	0	2	2	2	0	Thymidylate	kinase
6PF2K	PF01591.18	gi|384434404|ref|YP_005643762.1|	-	0.13	11.5	0.0	0.24	10.7	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
THUMP	PF02926.17	gi|384434405|ref|YP_005643763.1|	-	0.00037	20.6	0.8	0.00082	19.5	0.2	2.0	2	0	0	2	2	2	1	THUMP	domain
NAD_binding_2	PF03446.15	gi|384434406|ref|YP_005643764.1|	-	5.4e-36	124.1	0.4	9.2e-36	123.4	0.4	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|384434406|ref|YP_005643764.1|	-	8.1e-27	93.9	0.0	1.2e-26	93.3	0.0	1.3	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.17	gi|384434406|ref|YP_005643764.1|	-	5e-11	43.0	1.0	9.2e-11	42.2	0.1	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|384434406|ref|YP_005643764.1|	-	7.2e-06	26.1	0.2	1.4e-05	25.2	0.2	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|384434406|ref|YP_005643764.1|	-	6.5e-05	22.4	0.1	0.00012	21.5	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
OCD_Mu_crystall	PF02423.15	gi|384434406|ref|YP_005643764.1|	-	0.00022	20.3	0.0	0.0013	17.7	0.0	2.0	2	0	0	2	2	2	1	Ornithine	cyclodeaminase/mu-crystallin	family
GFO_IDH_MocA	PF01408.22	gi|384434406|ref|YP_005643764.1|	-	0.0014	19.4	0.0	0.0034	18.2	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
IlvN	PF07991.12	gi|384434406|ref|YP_005643764.1|	-	0.0016	18.0	0.4	0.0039	16.8	0.1	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
3HCDH_N	PF02737.18	gi|384434406|ref|YP_005643764.1|	-	0.0016	18.3	0.2	0.0071	16.3	0.1	2.0	1	1	1	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|384434406|ref|YP_005643764.1|	-	0.0049	16.5	0.2	0.011	15.4	0.0	1.6	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
DapB_N	PF01113.20	gi|384434406|ref|YP_005643764.1|	-	0.0099	16.0	0.4	0.031	14.4	0.4	2.0	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|384434406|ref|YP_005643764.1|	-	0.024	14.9	0.1	0.041	14.1	0.1	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
PDH	PF02153.17	gi|384434406|ref|YP_005643764.1|	-	0.05	12.6	0.5	0.099	11.6	0.5	1.5	1	1	0	1	1	1	0	Prephenate	dehydrogenase
TrkA_N	PF02254.18	gi|384434406|ref|YP_005643764.1|	-	0.093	13.0	0.3	0.65	10.3	0.1	2.4	2	1	0	2	2	2	0	TrkA-N	domain
adh_short_C2	PF13561.6	gi|384434407|ref|YP_005643765.1|	-	5e-37	127.7	0.0	6.9e-37	127.2	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384434407|ref|YP_005643765.1|	-	1.5e-34	119.2	0.0	1.8e-34	118.9	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384434407|ref|YP_005643765.1|	-	0.0023	17.9	0.0	0.0039	17.1	0.0	1.4	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.18	gi|384434407|ref|YP_005643765.1|	-	0.011	15.6	0.0	0.02	14.8	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|384434407|ref|YP_005643765.1|	-	0.036	14.6	0.0	0.2	12.3	0.0	2.0	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
THF_DHG_CYH_C	PF02882.19	gi|384434407|ref|YP_005643765.1|	-	0.14	11.5	0.1	0.37	10.1	0.0	1.7	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Cren7	PF11520.8	gi|384434408|ref|YP_005643766.1|	-	1.6e-33	114.4	3.4	1.7e-33	114.3	3.4	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
AA_kinase	PF00696.28	gi|384434409|ref|YP_005643767.1|	-	8.6e-26	91.0	0.3	3.5e-25	89.0	0.3	1.7	1	1	0	1	1	1	1	Amino	acid	kinase	family
T2SSE	PF00437.20	gi|384434409|ref|YP_005643767.1|	-	0.086	11.9	0.0	0.12	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Ca_bind_SSO6904	PF18249.1	gi|384434410|ref|YP_005643768.1|	-	9.3e-44	147.7	4.6	1e-43	147.6	4.6	1.0	1	0	0	1	1	1	1	Calcium	binding	protein	SSO6904
MtrG	PF04210.13	gi|384434410|ref|YP_005643768.1|	-	0.025	14.4	0.1	0.47	10.3	0.0	2.2	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
DrrA_P4M	PF14860.6	gi|384434410|ref|YP_005643768.1|	-	0.037	13.9	0.5	0.041	13.7	0.5	1.3	1	0	0	1	1	1	0	DrrA	phosphatidylinositol	4-phosphate	binding	domain
Tricorn_C1	PF14684.6	gi|384434410|ref|YP_005643768.1|	-	0.065	13.3	0.1	0.085	12.9	0.1	1.3	1	0	0	1	1	1	0	Tricorn	protease	C1	domain
HMGL-like	PF00682.19	gi|384434411|ref|YP_005643769.1|	-	4.7e-72	242.7	1.8	7e-72	242.1	1.8	1.3	1	0	0	1	1	1	1	HMGL-like
AsnC_trans_reg	PF01037.21	gi|384434411|ref|YP_005643769.1|	-	3.7e-14	52.4	2.8	6e-14	51.8	0.2	2.6	3	0	0	3	3	3	1	Lrp/AsnC	ligand	binding	domain
AP_endonuc_2	PF01261.24	gi|384434411|ref|YP_005643769.1|	-	2.6e-05	23.8	0.2	7.7e-05	22.2	0.1	1.9	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
ACT_4	PF13291.6	gi|384434411|ref|YP_005643769.1|	-	0.00036	21.1	2.0	0.055	14.1	0.5	3.9	3	1	1	4	4	4	1	ACT	domain
NapD	PF03927.13	gi|384434411|ref|YP_005643769.1|	-	0.016	15.3	0.2	0.068	13.2	0.2	2.1	1	0	0	1	1	1	0	NapD	protein
Radical_SAM	PF04055.21	gi|384434411|ref|YP_005643769.1|	-	0.024	15.0	1.6	0.072	13.5	0.5	2.3	2	1	1	3	3	3	0	Radical	SAM	superfamily
SurA_N_2	PF13623.6	gi|384434411|ref|YP_005643769.1|	-	0.079	12.8	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	SurA	N-terminal	domain
CinA_KH	PF18146.1	gi|384434411|ref|YP_005643769.1|	-	0.13	12.4	0.7	17	5.7	0.0	3.6	3	1	1	4	4	4	0	Damage-inducible	protein	CinA	KH	domain
Rib_5-P_isom_A	PF06026.14	gi|384434412|ref|YP_005643770.1|	-	8.3e-45	152.5	0.2	1e-44	152.2	0.2	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
Sugar-bind	PF04198.13	gi|384434412|ref|YP_005643770.1|	-	0.019	14.1	0.0	0.028	13.6	0.0	1.2	1	0	0	1	1	1	0	Putative	sugar-binding	domain
DUF202	PF02656.15	gi|384434413|ref|YP_005643771.1|	-	2.1e-21	76.1	0.5	3.1e-21	75.6	0.5	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF202)
YtpI	PF14007.6	gi|384434413|ref|YP_005643771.1|	-	0.0018	18.4	2.9	0.0026	17.9	2.9	1.3	1	0	0	1	1	1	1	YtpI-like	protein
DUF5381	PF17353.2	gi|384434413|ref|YP_005643771.1|	-	0.011	15.5	2.9	0.014	15.2	2.9	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5381)
DUF3902	PF13042.6	gi|384434413|ref|YP_005643771.1|	-	0.029	14.0	2.6	0.034	13.7	2.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3902)
DUF3593	PF12159.8	gi|384434413|ref|YP_005643771.1|	-	0.037	14.1	2.4	0.067	13.2	2.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3593)
CrgA	PF06781.12	gi|384434413|ref|YP_005643771.1|	-	0.3	11.2	2.6	6.8	6.8	0.4	2.2	2	0	0	2	2	2	0	Cell	division	protein	CrgA
Tetraspanin	PF00335.20	gi|384434413|ref|YP_005643771.1|	-	0.71	9.5	4.4	0.81	9.3	4.4	1.1	1	0	0	1	1	1	0	Tetraspanin	family
DUF2207	PF09972.9	gi|384434413|ref|YP_005643771.1|	-	1.2	7.8	3.1	1.4	7.6	3.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
SdpI	PF13630.6	gi|384434413|ref|YP_005643771.1|	-	1.6	8.9	6.2	30	4.8	6.2	2.1	1	1	0	1	1	1	0	SdpI/YhfL	protein	family
Neurensin	PF14927.6	gi|384434413|ref|YP_005643771.1|	-	6.3	6.5	9.4	7.4	6.3	2.5	2.6	1	1	2	3	3	3	0	Neurensin
DDE_Tnp_2	PF04693.12	gi|384434414|ref|YP_005643772.1|	-	4.5e-179	594.7	1.9	5.2e-179	594.5	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434414|ref|YP_005643772.1|	-	9.7e-06	25.1	0.0	1.8e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434414|ref|YP_005643772.1|	-	0.0012	18.5	0.0	0.0022	17.7	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
PK	PF00224.21	gi|384434415|ref|YP_005643773.1|	-	5.9e-83	278.6	2.7	1e-82	277.9	2.7	1.3	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|384434415|ref|YP_005643773.1|	-	4.6e-23	81.7	0.1	2.2e-22	79.5	0.1	2.2	2	0	0	2	2	2	1	Pyruvate	kinase,	alpha/beta	domain
Cpn10	PF00166.21	gi|384434415|ref|YP_005643773.1|	-	0.0081	16.2	0.1	0.042	13.9	0.0	2.3	2	0	0	2	2	2	1	Chaperonin	10	Kd	subunit
HpcH_HpaI	PF03328.14	gi|384434415|ref|YP_005643773.1|	-	0.032	13.4	0.3	0.07	12.3	0.1	1.8	2	0	0	2	2	2	0	HpcH/HpaI	aldolase/citrate	lyase	family
Med2	PF11214.8	gi|384434415|ref|YP_005643773.1|	-	0.098	12.8	0.4	0.098	12.8	0.4	2.1	2	0	0	2	2	2	0	Mediator	complex	subunit	2
DUF1955	PF09205.10	gi|384434416|ref|YP_005643774.1|	-	4.4e-75	250.8	10.8	5e-75	250.6	10.8	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1955)
IlvC	PF01450.19	gi|384434416|ref|YP_005643774.1|	-	0.0058	16.9	0.1	1.8	8.8	0.0	2.4	1	1	1	2	2	2	2	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Dodecin	PF07311.12	gi|384434416|ref|YP_005643774.1|	-	0.1	12.9	0.1	0.21	11.9	0.1	1.5	1	0	0	1	1	1	0	Dodecin
DAO	PF01266.24	gi|384434417|ref|YP_005643775.1|	-	1.5e-46	159.6	0.0	1.8e-46	159.4	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|384434417|ref|YP_005643775.1|	-	1.3e-05	25.3	0.6	2.9e-05	24.2	0.4	1.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|384434417|ref|YP_005643775.1|	-	9e-05	21.8	0.0	0.0013	18.0	0.0	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|384434417|ref|YP_005643775.1|	-	0.0041	16.4	0.2	0.0061	15.8	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|384434417|ref|YP_005643775.1|	-	0.013	14.8	1.0	0.024	13.9	1.0	1.4	1	0	0	1	1	1	0	Thi4	family
FAD_binding_2	PF00890.24	gi|384434417|ref|YP_005643775.1|	-	0.039	13.0	1.1	0.073	12.1	1.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384434417|ref|YP_005643775.1|	-	0.17	11.4	1.1	0.31	10.6	1.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|384434417|ref|YP_005643775.1|	-	0.3	10.3	3.9	0.24	10.6	2.0	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|384434417|ref|YP_005643775.1|	-	0.33	9.7	0.8	1.4	7.7	0.6	1.9	2	0	0	2	2	2	0	Tryptophan	halogenase
Glycos_transf_1	PF00534.20	gi|384434419|ref|YP_005643777.1|	-	2.4e-31	108.5	0.0	4.6e-31	107.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|384434419|ref|YP_005643777.1|	-	4.5e-28	98.6	0.1	6.7e-28	98.0	0.1	1.2	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_1_4	PF13692.6	gi|384434419|ref|YP_005643777.1|	-	1.6e-23	83.6	0.0	4.2e-23	82.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|384434419|ref|YP_005643777.1|	-	2.4e-10	40.7	1.2	9.5e-05	22.5	0.0	2.5	2	0	0	2	2	2	2	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|384434419|ref|YP_005643777.1|	-	8.4e-06	26.3	0.0	0.0001	22.8	0.0	2.3	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|384434419|ref|YP_005643777.1|	-	0.0039	17.5	0.0	0.049	14.0	0.0	2.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_hydro_57	PF03065.15	gi|384434420|ref|YP_005643778.1|	-	1.9e-78	264.0	9.7	3e-78	263.3	9.7	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
Polysacc_deac_1	PF01522.21	gi|384434420|ref|YP_005643778.1|	-	0.0081	16.1	0.1	0.023	14.6	0.0	1.7	2	0	0	2	2	2	1	Polysaccharide	deacetylase
NTP_transferase	PF00483.23	gi|384434421|ref|YP_005643779.1|	-	2.9e-37	128.6	0.0	3.7e-37	128.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
DUF4954	PF16314.5	gi|384434421|ref|YP_005643779.1|	-	4.6e-08	31.7	3.7	4.6e-08	31.7	3.7	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4954)
Hexapep	PF00132.24	gi|384434421|ref|YP_005643779.1|	-	2.9e-07	30.0	12.0	0.042	13.6	0.1	4.6	2	2	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
Fucokinase	PF07959.12	gi|384434421|ref|YP_005643779.1|	-	0.0058	15.6	0.6	0.48	9.3	0.3	2.2	1	1	1	2	2	2	2	L-fucokinase
NTP_transf_3	PF12804.7	gi|384434421|ref|YP_005643779.1|	-	0.02	15.2	0.0	0.058	13.8	0.0	1.8	2	0	0	2	2	2	0	MobA-like	NTP	transferase	domain
Glyco_hydro_15	PF00723.21	gi|384434422|ref|YP_005643780.1|	-	5.5e-18	65.0	0.2	5.6e-14	51.8	0.6	2.4	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
Glucodextran_N	PF09137.11	gi|384434422|ref|YP_005643780.1|	-	0.0016	18.1	0.0	0.0022	17.6	0.0	1.1	1	0	0	1	1	1	1	Glucodextranase,	domain	N
GDE_C	PF06202.14	gi|384434423|ref|YP_005643781.1|	-	1.2e-104	350.3	0.0	1.6e-104	349.9	0.0	1.1	1	0	0	1	1	1	1	Amylo-alpha-1,6-glucosidase
GDE_N	PF12439.8	gi|384434423|ref|YP_005643781.1|	-	4.2e-50	170.2	1.5	5.9e-50	169.7	1.5	1.2	1	0	0	1	1	1	1	Glycogen	debranching	enzyme	N	terminal
DUF608	PF04685.13	gi|384434423|ref|YP_005643781.1|	-	5e-05	22.6	0.3	7.9e-05	22.0	0.3	1.2	1	0	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydro_100	PF12899.7	gi|384434423|ref|YP_005643781.1|	-	0.0015	17.3	0.1	1.3	7.6	0.0	2.7	3	0	0	3	3	3	2	Alkaline	and	neutral	invertase
Glyco_hydro_63	PF03200.16	gi|384434423|ref|YP_005643781.1|	-	0.0037	16.1	0.0	0.0084	14.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	63	C-terminal	domain
MFS_1	PF07690.16	gi|384434424|ref|YP_005643782.1|	-	3.3e-32	111.8	52.7	7.7e-19	67.8	27.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PadR	PF03551.14	gi|384434425|ref|YP_005643783.1|	-	3.6e-14	52.5	0.6	5.5e-14	51.9	0.6	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|384434425|ref|YP_005643783.1|	-	0.0035	17.2	0.1	0.0054	16.6	0.1	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.10	gi|384434425|ref|YP_005643783.1|	-	0.0043	17.0	0.5	0.0071	16.3	0.5	1.5	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_34	PF13601.6	gi|384434425|ref|YP_005643783.1|	-	0.0056	16.8	0.1	0.0068	16.6	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|384434425|ref|YP_005643783.1|	-	0.067	13.0	0.5	0.12	12.3	0.5	1.5	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF302	PF03625.14	gi|384434426|ref|YP_005643784.1|	-	2.6e-15	56.0	0.0	3.5e-15	55.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Pox_ATPase-GT	PF10640.9	gi|384434426|ref|YP_005643784.1|	-	0.02	13.8	0.0	0.027	13.4	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme	N-terminal,	ATPase	and	guanylyltransferase
QRPTase_C	PF01729.19	gi|384434427|ref|YP_005643785.1|	-	6e-59	198.6	0.0	7.4e-59	198.3	0.0	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|384434427|ref|YP_005643785.1|	-	1.3e-16	60.4	0.0	2.6e-16	59.4	0.0	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PRAI	PF00697.22	gi|384434427|ref|YP_005643785.1|	-	0.13	12.0	0.1	0.28	10.9	0.1	1.4	1	1	0	1	1	1	0	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
FAD_binding_2	PF00890.24	gi|384434428|ref|YP_005643786.1|	-	5e-74	249.9	0.0	1.1e-73	248.7	0.0	1.5	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|384434428|ref|YP_005643786.1|	-	3.1e-11	43.0	1.4	1e-05	24.9	0.9	3.1	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384434428|ref|YP_005643786.1|	-	4.5e-11	42.9	0.9	8.3e-10	38.8	0.9	2.1	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|384434428|ref|YP_005643786.1|	-	1.5e-09	37.4	0.8	4.6e-09	35.9	0.2	1.9	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
Succ_DH_flav_C	PF02910.20	gi|384434428|ref|YP_005643786.1|	-	3.6e-08	33.4	0.0	2.9e-06	27.3	0.0	2.3	1	1	1	2	2	2	1	Fumarate	reductase	flavoprotein	C-term
HI0933_like	PF03486.14	gi|384434428|ref|YP_005643786.1|	-	4.7e-08	32.2	1.7	8.8e-07	28.0	0.5	2.8	2	1	0	2	2	2	1	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|384434428|ref|YP_005643786.1|	-	0.00014	21.3	0.1	0.28	10.4	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|384434428|ref|YP_005643786.1|	-	0.00019	21.6	0.5	0.00056	20.1	0.5	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|384434428|ref|YP_005643786.1|	-	0.0012	17.8	0.3	0.026	13.4	0.0	2.1	2	0	0	2	2	2	1	Tryptophan	halogenase
Thi4	PF01946.17	gi|384434428|ref|YP_005643786.1|	-	0.0013	18.0	0.3	0.0021	17.3	0.3	1.3	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.6	gi|384434428|ref|YP_005643786.1|	-	0.0023	17.9	0.2	0.23	11.4	0.0	3.0	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|384434428|ref|YP_005643786.1|	-	0.0042	17.6	0.8	0.13	12.8	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|384434428|ref|YP_005643786.1|	-	0.013	14.8	0.1	0.02	14.1	0.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|384434428|ref|YP_005643786.1|	-	0.075	12.4	0.0	0.092	12.1	0.0	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
DUF4754	PF15946.5	gi|384434428|ref|YP_005643786.1|	-	0.076	13.3	0.0	0.23	11.8	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4754)
RNA_pol_L	PF01193.24	gi|384434428|ref|YP_005643786.1|	-	0.16	11.4	0.0	0.26	10.7	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
NadA	PF02445.16	gi|384434429|ref|YP_005643787.1|	-	4e-103	344.7	3.3	4.5e-103	344.5	3.3	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
GARS_N	PF02844.15	gi|384434429|ref|YP_005643787.1|	-	0.06	14.1	0.2	1.8	9.4	0.0	2.8	1	1	1	2	2	2	0	Phosphoribosylglycinamide	synthetase,	N	domain
SBP_bac_1	PF01547.25	gi|384434430|ref|YP_005643788.1|	-	7.9e-27	95.0	2.5	3e-26	93.1	2.5	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|384434430|ref|YP_005643788.1|	-	5.7e-21	75.6	0.1	8.2e-21	75.1	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|384434430|ref|YP_005643788.1|	-	0.0015	18.0	0.1	0.078	12.4	0.0	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|384434430|ref|YP_005643788.1|	-	0.0026	17.5	0.0	1.2	8.9	0.0	3.0	2	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
VSP	PF03302.13	gi|384434430|ref|YP_005643788.1|	-	0.19	10.5	0.8	0.27	10.0	0.8	1.1	1	0	0	1	1	1	0	Giardia	variant-specific	surface	protein
FtsX	PF02687.21	gi|384434430|ref|YP_005643788.1|	-	0.19	12.2	2.1	0.18	12.3	0.6	1.7	2	0	0	2	2	2	0	FtsX-like	permease	family
Sigma_reg_N	PF13800.6	gi|384434430|ref|YP_005643788.1|	-	0.48	10.7	3.9	3.3	8.1	0.6	2.5	1	1	1	2	2	2	0	Sigma	factor	regulator	N-terminal
DUF4342	PF14242.6	gi|384434430|ref|YP_005643788.1|	-	6	6.9	8.1	7.3	6.7	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4342)
BPD_transp_1	PF00528.22	gi|384434431|ref|YP_005643789.1|	-	2.6e-15	56.6	18.4	2.6e-15	56.6	18.4	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384434432|ref|YP_005643790.1|	-	3.7e-16	59.4	19.6	3.7e-16	59.4	19.6	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|384434433|ref|YP_005643791.1|	-	3.5e-33	115.0	0.0	8.1e-33	113.8	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|384434433|ref|YP_005643791.1|	-	1.4e-06	28.4	0.1	0.062	13.1	0.0	2.4	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|384434433|ref|YP_005643791.1|	-	0.00041	20.3	0.1	0.001	19.0	0.1	1.6	1	0	0	1	1	1	1	RsgA	GTPase
SMC_N	PF02463.19	gi|384434433|ref|YP_005643791.1|	-	0.00089	18.8	0.3	0.0049	16.3	0.3	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|384434433|ref|YP_005643791.1|	-	0.0074	16.0	0.1	0.016	15.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|384434433|ref|YP_005643791.1|	-	0.082	12.8	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|384434433|ref|YP_005643791.1|	-	0.25	11.8	3.5	0.3	11.6	0.9	2.1	2	0	0	2	2	2	0	AAA	domain
FAD_binding_4	PF01565.23	gi|384434434|ref|YP_005643792.1|	-	3.5e-26	91.6	0.0	5.8e-26	90.9	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|384434434|ref|YP_005643792.1|	-	6.4e-05	22.7	0.2	0.00016	21.4	0.1	1.7	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
DUF1769	PF08588.10	gi|384434434|ref|YP_005643792.1|	-	0.15	12.3	0.1	0.46	10.7	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1769)
DUF1177	PF06675.11	gi|384434435|ref|YP_005643793.1|	-	1.8e-103	345.1	0.2	2.2e-103	344.8	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1177)
HTH_40	PF14493.6	gi|384434435|ref|YP_005643793.1|	-	0.065	13.7	0.8	0.19	12.2	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
PRMT5_TIM	PF17285.2	gi|384434435|ref|YP_005643793.1|	-	0.19	10.9	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	PRMT5	TIM	barrel	domain
Peptidase_M20	PF01546.28	gi|384434436|ref|YP_005643794.1|	-	1.7e-34	119.4	0.0	2e-34	119.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|384434436|ref|YP_005643794.1|	-	1.4e-14	53.9	0.0	2.4e-14	53.2	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
HTH_10	PF04967.12	gi|384434437|ref|YP_005643795.1|	-	2.5e-23	81.6	0.2	4.5e-23	80.8	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|384434437|ref|YP_005643795.1|	-	0.01	15.4	0.0	0.023	14.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|384434437|ref|YP_005643795.1|	-	0.053	13.6	0.0	0.091	12.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|384434437|ref|YP_005643795.1|	-	0.056	13.0	0.3	0.48	10.0	0.3	2.2	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_11	PF08279.12	gi|384434437|ref|YP_005643795.1|	-	0.065	13.2	0.0	0.34	10.9	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
AA_permease_2	PF13520.6	gi|384434438|ref|YP_005643796.1|	-	3.2e-28	98.7	70.7	4.2e-28	98.3	70.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384434438|ref|YP_005643796.1|	-	7.9e-24	84.1	61.9	1e-23	83.7	61.9	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Pyr_redox_2	PF07992.14	gi|384434439|ref|YP_005643797.1|	-	2e-40	138.9	0.6	2.4e-40	138.6	0.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384434439|ref|YP_005643797.1|	-	5.4e-13	49.3	2.6	1.4e-11	44.8	0.4	3.2	4	0	0	4	4	4	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384434439|ref|YP_005643797.1|	-	3.6e-06	26.4	0.1	8.6e-06	25.2	0.2	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|384434439|ref|YP_005643797.1|	-	7.6e-05	22.0	0.0	0.00013	21.3	0.0	1.3	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
DAO	PF01266.24	gi|384434439|ref|YP_005643797.1|	-	0.00054	19.6	0.3	0.65	9.5	0.2	3.6	3	1	1	4	4	4	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|384434439|ref|YP_005643797.1|	-	0.15	12.3	0.0	8.5	6.7	0.0	2.5	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
CooT	PF10133.9	gi|384434439|ref|YP_005643797.1|	-	1.4	9.2	6.3	8.2	6.8	0.5	3.2	4	0	0	4	4	4	0	CO	dehydrogenase	accessory	protein	CooT
TPP_enzyme_N	PF02776.18	gi|384434440|ref|YP_005643798.1|	-	6.3e-49	165.9	0.0	2.4e-47	160.7	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|384434440|ref|YP_005643798.1|	-	3.8e-40	137.2	0.5	1.9e-39	134.9	0.0	2.3	2	1	1	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|384434440|ref|YP_005643798.1|	-	1.6e-30	105.6	0.0	2.9e-30	104.8	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.19	gi|384434440|ref|YP_005643798.1|	-	0.00077	19.3	0.0	0.0018	18.0	0.0	1.6	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Methyltrn_RNA_4	PF09936.9	gi|384434440|ref|YP_005643798.1|	-	0.049	13.5	0.0	0.094	12.6	0.0	1.4	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
MdoG	PF04349.12	gi|384434440|ref|YP_005643798.1|	-	0.16	10.8	0.0	0.28	10.1	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	glucan	biosynthesis	protein,	MdoG
NicO	PF03824.16	gi|384434441|ref|YP_005643799.1|	-	4.3e-98	328.1	12.8	4.3e-98	328.1	12.8	1.4	2	0	0	2	2	2	1	High-affinity	nickel-transport	protein
Brr6_like_C_C	PF10104.9	gi|384434441|ref|YP_005643799.1|	-	0.71	9.7	3.6	0.84	9.4	1.0	2.5	2	0	0	2	2	2	0	Di-sulfide	bridge	nucleocytoplasmic	transport	domain
Rhodanese	PF00581.20	gi|384434442|ref|YP_005643800.1|	-	1.1e-33	115.9	0.1	5.2e-17	62.3	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
DUF442	PF04273.13	gi|384434442|ref|YP_005643800.1|	-	0.085	12.9	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Putative	phosphatase	(DUF442)
DUF2582	PF10771.9	gi|384434442|ref|YP_005643800.1|	-	0.096	12.9	1.2	0.3	11.3	0.1	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix	domain	(DUF2582)
Jnk-SapK_ap_N	PF09744.9	gi|384434443|ref|YP_005643801.1|	-	0.12	12.6	5.5	0.07	13.3	2.9	1.7	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
DUF2644	PF10841.8	gi|384434443|ref|YP_005643801.1|	-	0.18	12.0	0.0	0.3	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2644)
Proton_antipo_M	PF00361.20	gi|384434444|ref|YP_005643802.1|	-	1.1e-15	57.7	28.6	1.1e-15	57.7	28.6	4.1	3	1	1	4	4	4	2	Proton-conducting	membrane	transporter
Oxidored_q6	PF01058.22	gi|384434445|ref|YP_005643803.1|	-	5.2e-21	74.9	0.4	1.5e-20	73.4	0.4	1.7	1	1	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Fer4	PF00037.27	gi|384434445|ref|YP_005643803.1|	-	0.1	12.5	13.1	0.17	11.8	0.4	3.6	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Complex1_49kDa	PF00346.19	gi|384434446|ref|YP_005643804.1|	-	2e-21	76.3	0.0	5.2e-18	65.1	0.0	2.2	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.19	gi|384434446|ref|YP_005643804.1|	-	0.0067	15.4	0.0	0.48	9.2	0.0	2.1	2	0	0	2	2	2	2	Nickel-dependent	hydrogenase
Proton_antipo_M	PF00361.20	gi|384434447|ref|YP_005643805.1|	-	2.2e-44	151.9	24.7	2.2e-44	151.9	24.7	2.8	1	1	2	3	3	3	1	Proton-conducting	membrane	transporter
CrgA	PF06781.12	gi|384434448|ref|YP_005643806.1|	-	0.24	11.5	1.7	0.33	11.0	0.1	2.1	2	0	0	2	2	2	0	Cell	division	protein	CrgA
NADHdh	PF00146.21	gi|384434449|ref|YP_005643807.1|	-	2.5e-34	118.9	22.0	3.2e-34	118.6	22.0	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
TatD_DNase	PF01026.21	gi|384434451|ref|YP_005643809.1|	-	7.1e-33	114.0	0.0	2.1e-32	112.5	0.0	1.6	1	1	0	1	1	1	1	TatD	related	DNase
Molybdopterin	PF00384.22	gi|384434452|ref|YP_005643810.1|	-	1.3e-75	255.0	0.0	1.6e-75	254.7	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|384434452|ref|YP_005643810.1|	-	1.8e-24	85.9	0.0	3.5e-24	84.9	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|384434452|ref|YP_005643810.1|	-	2e-17	62.9	0.2	4.4e-17	61.8	0.2	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Dynein_attach_N	PF15867.5	gi|384434452|ref|YP_005643810.1|	-	0.16	12.0	0.2	0.33	10.9	0.2	1.5	1	0	0	1	1	1	0	Dynein	attachment	factor	N-terminus
adh_short	PF00106.25	gi|384434453|ref|YP_005643811.1|	-	2.1e-47	161.1	0.3	4.7e-47	160.0	0.3	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|384434453|ref|YP_005643811.1|	-	8.9e-36	123.6	0.0	1.4e-35	122.9	0.0	1.3	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.21	gi|384434453|ref|YP_005643811.1|	-	9.2e-07	28.6	0.1	1.6e-06	27.8	0.1	1.5	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|384434453|ref|YP_005643811.1|	-	1.5e-05	24.9	0.1	0.00026	20.9	0.1	2.2	1	1	0	1	1	1	1	NAD(P)H-binding
KR	PF08659.10	gi|384434453|ref|YP_005643811.1|	-	0.00036	20.5	0.0	0.013	15.4	0.0	2.3	1	1	0	1	1	1	1	KR	domain
THF_DHG_CYH_C	PF02882.19	gi|384434453|ref|YP_005643811.1|	-	0.0015	17.9	0.1	0.0032	16.8	0.1	1.5	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
RmlD_sub_bind	PF04321.17	gi|384434453|ref|YP_005643811.1|	-	0.0049	16.0	0.1	0.015	14.4	0.0	1.7	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
SBP_bac_11	PF13531.6	gi|384434454|ref|YP_005643812.1|	-	1.5e-20	74.0	0.3	2.2e-20	73.4	0.3	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|384434454|ref|YP_005643812.1|	-	6.1e-12	46.1	5.1	8.4e-12	45.7	5.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF3446	PF11928.8	gi|384434454|ref|YP_005643812.1|	-	0.077	13.3	9.9	0.17	12.2	8.6	2.2	2	0	0	2	2	2	0	Early	growth	response	N-terminal	domain
DUF2371	PF10177.9	gi|384434454|ref|YP_005643812.1|	-	0.49	10.6	1.8	12	6.0	0.4	2.2	1	1	1	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
DUF4307	PF14155.6	gi|384434454|ref|YP_005643812.1|	-	0.51	10.2	2.7	0.45	10.4	1.0	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4307)
Saf_2TM	PF18303.1	gi|384434454|ref|YP_005643812.1|	-	2.2	7.9	5.2	7.1	6.2	5.2	1.8	1	1	0	1	1	1	0	SAVED-fused	2TM	effector	domain
FeoB_associated	PF12669.7	gi|384434454|ref|YP_005643812.1|	-	3.7	8.0	4.7	8	6.9	4.7	1.5	1	0	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
BPD_transp_1	PF00528.22	gi|384434455|ref|YP_005643813.1|	-	2.3e-16	60.1	15.9	2.3e-16	60.1	15.9	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
fn3	PF00041.21	gi|384434456|ref|YP_005643814.1|	-	2.1e-19	69.7	15.8	6.8e-11	42.4	0.8	3.7	5	1	0	5	5	5	2	Fibronectin	type	III	domain
Kelch_6	PF13964.6	gi|384434456|ref|YP_005643814.1|	-	9.4e-19	67.0	34.5	0.00021	21.5	0.6	7.5	4	1	3	7	7	7	4	Kelch	motif
Kelch_1	PF01344.25	gi|384434456|ref|YP_005643814.1|	-	5.5e-12	45.1	34.4	0.00015	21.3	0.7	7.0	6	1	0	6	6	6	5	Kelch	motif
Kelch_5	PF13854.6	gi|384434456|ref|YP_005643814.1|	-	2.4e-09	37.0	33.4	0.0074	16.2	2.4	6.9	6	0	0	6	6	6	4	Kelch	motif
Kelch_2	PF07646.15	gi|384434456|ref|YP_005643814.1|	-	1.1e-07	31.5	16.6	0.19	11.8	0.1	6.2	6	0	0	6	6	6	4	Kelch	motif
DUF2369	PF10179.9	gi|384434456|ref|YP_005643814.1|	-	4.1e-07	30.3	0.2	0.025	15.0	0.0	2.5	2	0	0	2	2	2	2	Uncharacterised	conserved	protein	(DUF2369)
Kelch_4	PF13418.6	gi|384434456|ref|YP_005643814.1|	-	0.00058	19.8	21.5	0.086	12.9	0.0	6.4	6	1	0	6	6	6	2	Galactose	oxidase,	central	domain
Interfer-bind	PF09294.10	gi|384434456|ref|YP_005643814.1|	-	0.003	17.9	0.0	2	8.8	0.0	2.5	2	0	0	2	2	2	2	Interferon-alpha/beta	receptor,	fibronectin	type	III
Pur_ac_phosph_N	PF16656.5	gi|384434456|ref|YP_005643814.1|	-	0.1	13.2	7.2	0.56	10.8	0.2	3.7	4	1	0	4	4	4	0	Purple	acid	Phosphatase,	N-terminal	domain
Y_Y_Y	PF07495.13	gi|384434456|ref|YP_005643814.1|	-	0.63	10.0	13.1	0.28	11.2	0.3	4.1	4	0	0	4	4	4	0	Y_Y_Y	domain
Kelch_3	PF13415.6	gi|384434456|ref|YP_005643814.1|	-	2.9	8.3	17.7	16	5.9	0.1	6.3	4	2	1	5	5	5	0	Galactose	oxidase,	central	domain
ABC_tran	PF00005.27	gi|384434457|ref|YP_005643815.1|	-	6.1e-24	85.1	0.0	1e-23	84.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384434457|ref|YP_005643815.1|	-	3.6e-17	63.1	1.1	1.4e-09	38.2	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384434457|ref|YP_005643815.1|	-	3.8e-11	42.9	5.6	2.5e-08	33.7	5.6	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|384434457|ref|YP_005643815.1|	-	3.5e-05	23.7	8.6	0.00011	22.1	8.6	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384434457|ref|YP_005643815.1|	-	3.9e-05	23.3	0.0	6.6e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384434457|ref|YP_005643815.1|	-	8.6e-05	23.1	4.9	0.00021	21.8	4.9	1.8	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|384434457|ref|YP_005643815.1|	-	0.00024	20.3	0.0	0.00031	19.9	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_14	PF13173.6	gi|384434457|ref|YP_005643815.1|	-	0.00078	19.5	0.4	0.042	13.9	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|384434457|ref|YP_005643815.1|	-	0.0074	16.1	0.0	0.01	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|384434457|ref|YP_005643815.1|	-	0.011	15.6	0.0	0.031	14.2	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
AAA_16	PF13191.6	gi|384434457|ref|YP_005643815.1|	-	0.012	16.0	0.0	0.014	15.8	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
SbcCD_C	PF13558.6	gi|384434457|ref|YP_005643815.1|	-	0.013	15.8	0.1	0.25	11.6	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DEAD	PF00270.29	gi|384434457|ref|YP_005643815.1|	-	0.018	14.8	0.0	0.026	14.3	0.0	1.4	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
ATPase_2	PF01637.18	gi|384434457|ref|YP_005643815.1|	-	0.021	14.7	0.5	0.038	13.9	0.5	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
DUF3584	PF12128.8	gi|384434457|ref|YP_005643815.1|	-	0.034	11.7	0.0	0.048	11.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_30	PF13604.6	gi|384434457|ref|YP_005643815.1|	-	0.051	13.3	0.0	0.21	11.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|384434457|ref|YP_005643815.1|	-	0.054	13.2	0.0	0.11	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|384434457|ref|YP_005643815.1|	-	0.097	12.2	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Sigma54_activat	PF00158.26	gi|384434457|ref|YP_005643815.1|	-	0.11	12.2	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA	PF00004.29	gi|384434457|ref|YP_005643815.1|	-	0.12	12.7	0.1	0.23	11.9	0.1	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|384434457|ref|YP_005643815.1|	-	0.13	11.6	0.0	0.19	11.1	0.0	1.2	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
cobW	PF02492.19	gi|384434457|ref|YP_005643815.1|	-	0.16	11.6	0.0	0.4	10.2	0.0	1.7	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Curlin_rpt	PF07012.12	gi|384434458|ref|YP_005643816.1|	-	0.26	11.3	1.9	0.69	10.0	1.9	1.7	1	0	0	1	1	1	0	Curlin	associated	repeat
DUF35_N	PF12172.8	gi|384434459|ref|YP_005643817.1|	-	0.0025	17.7	1.2	0.42	10.5	0.2	2.1	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin_2	PF18073.1	gi|384434459|ref|YP_005643817.1|	-	0.0027	17.4	4.7	0.35	10.6	0.1	2.2	2	0	0	2	2	2	2	Rubredoxin	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|384434459|ref|YP_005643817.1|	-	0.0061	16.7	3.6	0.24	11.5	3.6	2.2	1	1	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|384434459|ref|YP_005643817.1|	-	0.0064	16.5	0.0	0.01	15.8	0.0	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF2757	PF10955.8	gi|384434459|ref|YP_005643817.1|	-	0.0068	16.6	0.4	0.13	12.5	0.1	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2757)
TF_Zn_Ribbon	PF08271.12	gi|384434459|ref|YP_005643817.1|	-	0.0074	15.8	0.9	1.8	8.1	0.1	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|384434459|ref|YP_005643817.1|	-	0.0075	16.0	4.9	0.28	10.9	0.8	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|384434459|ref|YP_005643817.1|	-	0.0095	15.3	2.9	0.59	9.6	0.3	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|384434459|ref|YP_005643817.1|	-	0.015	15.2	0.9	3.3	7.7	0.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
HypA	PF01155.19	gi|384434459|ref|YP_005643817.1|	-	0.015	15.3	0.1	0.018	15.1	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-IS66	PF13005.7	gi|384434459|ref|YP_005643817.1|	-	0.028	14.8	0.8	8.8	6.8	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Nudix_N_2	PF14803.6	gi|384434459|ref|YP_005643817.1|	-	0.035	14.0	3.2	1.9	8.5	0.4	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_10	PF10058.9	gi|384434459|ref|YP_005643817.1|	-	0.037	13.8	0.6	1.1	9.0	0.1	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
ADK_lid	PF05191.14	gi|384434459|ref|YP_005643817.1|	-	0.037	14.0	1.5	0.14	12.1	1.5	1.8	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zf-TFIIB	PF13453.6	gi|384434459|ref|YP_005643817.1|	-	0.041	13.2	0.5	0.2	11.0	0.1	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.7	gi|384434459|ref|YP_005643817.1|	-	0.042	13.8	0.4	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Rad50_zn_hook	PF04423.14	gi|384434459|ref|YP_005643817.1|	-	0.043	13.7	0.0	0.072	12.9	0.0	1.3	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
zf_UBZ	PF18439.1	gi|384434459|ref|YP_005643817.1|	-	0.073	12.7	0.8	4.2	7.1	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-HIT	PF04438.16	gi|384434459|ref|YP_005643817.1|	-	0.075	12.9	3.1	1.6	8.7	0.2	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
zf-ACC	PF17848.1	gi|384434459|ref|YP_005643817.1|	-	0.077	13.1	1.7	7.6	6.7	0.1	2.5	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Mu-like_Com	PF10122.9	gi|384434459|ref|YP_005643817.1|	-	0.093	12.2	1.3	2.2	7.8	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zf_Rg	PF17915.1	gi|384434459|ref|YP_005643817.1|	-	0.094	12.1	0.9	0.59	9.6	0.1	2.1	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
TFIIS_C	PF01096.18	gi|384434459|ref|YP_005643817.1|	-	0.1	12.5	1.6	10	6.1	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
UPF0547	PF10571.9	gi|384434459|ref|YP_005643817.1|	-	0.11	12.6	2.6	2	8.5	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-FPG_IleRS	PF06827.14	gi|384434459|ref|YP_005643817.1|	-	0.15	12.0	6.7	2.3	8.2	1.4	2.5	2	1	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
DUF2688	PF10892.8	gi|384434459|ref|YP_005643817.1|	-	0.16	11.5	1.9	3.3	7.3	2.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2688)
zf-RRN7	PF11781.8	gi|384434459|ref|YP_005643817.1|	-	0.18	11.5	5.9	0.28	10.9	0.7	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
GFA	PF04828.14	gi|384434459|ref|YP_005643817.1|	-	0.2	12.0	0.9	1.6	9.2	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-LITAF-like	PF10601.9	gi|384434459|ref|YP_005643817.1|	-	0.21	11.8	1.5	17	5.8	0.1	2.2	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|384434459|ref|YP_005643817.1|	-	0.33	10.9	2.6	5.4	7.0	0.3	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
RIO1	PF01163.22	gi|384434460|ref|YP_005643818.1|	-	0.00048	19.8	0.1	0.00073	19.2	0.1	1.3	1	0	0	1	1	1	1	RIO1	family
SWIB	PF02201.18	gi|384434460|ref|YP_005643818.1|	-	0.001	18.9	0.3	0.24	11.3	0.0	2.4	2	0	0	2	2	2	2	SWIB/MDM2	domain
APH	PF01636.23	gi|384434460|ref|YP_005643818.1|	-	0.036	14.0	0.0	0.15	12.0	0.0	1.8	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
tRNA_NucTransf2	PF09249.11	gi|384434461|ref|YP_005643819.1|	-	4.4e-45	152.6	0.0	7.8e-45	151.8	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|384434461|ref|YP_005643819.1|	-	5.1e-17	62.0	0.4	1.7e-16	60.3	0.4	1.9	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
SMODS	PF18144.1	gi|384434461|ref|YP_005643819.1|	-	1.4e-06	28.6	0.2	5.2e-06	26.7	0.1	1.9	2	0	0	2	2	2	1	Second	Messenger	Oligonucleotide	or	Dinucleotide	Synthetase	domain
DNA_pol_B_palm	PF14792.6	gi|384434461|ref|YP_005643819.1|	-	0.064	13.5	0.0	0.17	12.1	0.0	1.7	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
LigT_PEase	PF02834.16	gi|384434462|ref|YP_005643820.1|	-	7e-36	122.3	0.0	1.2e-18	67.0	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|384434462|ref|YP_005643820.1|	-	4.1e-14	52.7	0.0	5.1e-14	52.4	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|384434462|ref|YP_005643820.1|	-	6.9e-10	39.2	0.0	1.2e-09	38.3	0.0	1.5	1	1	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|384434462|ref|YP_005643820.1|	-	0.026	14.0	0.0	0.04	13.4	0.0	1.4	1	1	0	1	1	1	0	Uncharacterised	conserved	protein
AAA_18	PF13238.6	gi|384434463|ref|YP_005643821.1|	-	1.1e-13	51.9	0.2	2.2e-13	50.9	0.1	1.6	1	1	1	2	2	2	1	AAA	domain
AAA_17	PF13207.6	gi|384434463|ref|YP_005643821.1|	-	7.6e-09	36.1	0.6	1.2e-08	35.5	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|384434463|ref|YP_005643821.1|	-	2.7e-08	34.1	0.0	3.9e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|384434463|ref|YP_005643821.1|	-	2.2e-06	27.9	0.0	2.6e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Adenylate	kinase
CoaE	PF01121.20	gi|384434463|ref|YP_005643821.1|	-	0.00016	21.4	0.1	0.29	10.8	0.0	2.1	1	1	1	2	2	2	2	Dephospho-CoA	kinase
AAA_22	PF13401.6	gi|384434463|ref|YP_005643821.1|	-	0.00056	20.2	0.0	0.00079	19.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.6	gi|384434463|ref|YP_005643821.1|	-	0.0018	18.6	0.0	0.0038	17.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.12	gi|384434463|ref|YP_005643821.1|	-	0.0018	17.6	0.0	0.0057	16.0	0.0	1.8	2	0	0	2	2	2	1	Zeta	toxin
KTI12	PF08433.10	gi|384434463|ref|YP_005643821.1|	-	0.0027	17.2	0.2	0.0051	16.3	0.0	1.5	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
NTPase_1	PF03266.15	gi|384434463|ref|YP_005643821.1|	-	0.0045	16.9	0.2	0.38	10.6	0.0	2.2	2	0	0	2	2	2	1	NTPase
Hpr_kinase_C	PF07475.12	gi|384434463|ref|YP_005643821.1|	-	0.005	16.4	0.1	0.0094	15.5	0.1	1.4	1	0	0	1	1	1	1	HPr	Serine	kinase	C-terminal	domain
cobW	PF02492.19	gi|384434463|ref|YP_005643821.1|	-	0.015	14.9	0.1	4	7.0	0.1	2.1	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Sigma54_activ_2	PF14532.6	gi|384434463|ref|YP_005643821.1|	-	0.02	15.0	0.0	0.13	12.4	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
APS_kinase	PF01583.20	gi|384434463|ref|YP_005643821.1|	-	0.028	14.3	0.1	0.32	10.9	0.0	2.1	1	1	1	2	2	2	0	Adenylylsulphate	kinase
CPT	PF07931.12	gi|384434463|ref|YP_005643821.1|	-	0.038	13.8	0.2	0.39	10.6	0.2	2.1	1	1	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
MeaB	PF03308.16	gi|384434463|ref|YP_005643821.1|	-	0.038	13.0	0.2	0.082	11.9	0.2	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
dNK	PF01712.19	gi|384434463|ref|YP_005643821.1|	-	0.039	13.8	0.2	0.26	11.1	0.0	2.0	1	1	1	2	2	2	0	Deoxynucleoside	kinase
AAA_14	PF13173.6	gi|384434463|ref|YP_005643821.1|	-	0.041	13.9	0.0	0.066	13.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|384434463|ref|YP_005643821.1|	-	0.043	14.2	0.1	0.066	13.6	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|384434463|ref|YP_005643821.1|	-	0.044	13.5	0.1	0.083	12.6	0.0	1.6	1	1	1	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|384434463|ref|YP_005643821.1|	-	0.055	13.5	0.2	0.45	10.5	0.1	2.2	1	1	1	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Tra_M	PF05261.11	gi|384434463|ref|YP_005643821.1|	-	0.075	13.0	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	TraM	protein,	DNA-binding
RNA_binding	PF01877.17	gi|384434464|ref|YP_005643822.1|	-	1.5e-18	67.2	0.3	1.8e-18	67.0	0.3	1.1	1	0	0	1	1	1	1	RNA	binding
DUF5378	PF17349.2	gi|384434464|ref|YP_005643822.1|	-	0.016	14.5	0.1	0.019	14.3	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5378)
Lactamase_B_2	PF12706.7	gi|384434465|ref|YP_005643823.1|	-	1.1e-16	61.0	0.0	4.9e-09	36.0	0.0	2.1	2	0	0	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|384434465|ref|YP_005643823.1|	-	4.7e-10	39.8	0.0	1e-08	35.4	0.0	2.3	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
TetR_C_23	PF17931.1	gi|384434465|ref|YP_005643823.1|	-	0.074	13.2	0.3	0.13	12.3	0.3	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
UPF0020	PF01170.18	gi|384434466|ref|YP_005643824.1|	-	2.3e-23	82.9	0.0	1.9e-22	79.9	0.0	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
N6_N4_Mtase	PF01555.18	gi|384434466|ref|YP_005643824.1|	-	8.8e-11	42.0	0.1	2.5e-07	30.7	0.1	2.1	2	0	0	2	2	2	2	DNA	methylase
MTS	PF05175.14	gi|384434466|ref|YP_005643824.1|	-	7.3e-05	22.4	0.0	0.00014	21.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
MethyltransfD12	PF02086.15	gi|384434466|ref|YP_005643824.1|	-	0.00036	20.3	0.1	0.0029	17.3	0.1	2.3	1	1	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
Cons_hypoth95	PF03602.15	gi|384434466|ref|YP_005643824.1|	-	0.00086	19.0	0.0	0.0017	18.0	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.6	gi|384434466|ref|YP_005643824.1|	-	0.0046	17.6	0.0	0.013	16.2	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Eco57I	PF07669.11	gi|384434466|ref|YP_005643824.1|	-	0.0087	16.5	0.0	0.98	10.0	0.0	2.4	2	0	0	2	2	2	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|384434466|ref|YP_005643824.1|	-	0.047	13.0	0.0	0.15	11.3	0.0	1.9	1	1	0	1	1	1	0	N-6	DNA	Methylase
Methyltransf_31	PF13847.6	gi|384434466|ref|YP_005643824.1|	-	0.055	13.3	0.0	0.36	10.6	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
S_100	PF01023.19	gi|384434466|ref|YP_005643824.1|	-	0.095	12.4	0.0	0.26	11.0	0.0	1.8	2	0	0	2	2	2	0	S-100/ICaBP	type	calcium	binding	domain
Pribosyltran_N	PF13793.6	gi|384434467|ref|YP_005643825.1|	-	3.6e-31	107.5	0.0	1.6e-27	95.8	0.0	2.3	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|384434467|ref|YP_005643825.1|	-	8.5e-21	74.1	1.3	1.8e-19	69.8	0.9	2.3	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|384434467|ref|YP_005643825.1|	-	4.9e-08	33.2	1.4	1.6e-07	31.6	0.6	2.0	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|384434467|ref|YP_005643825.1|	-	0.0061	16.0	0.1	0.089	12.2	0.1	2.2	2	0	0	2	2	2	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|384434467|ref|YP_005643825.1|	-	0.035	13.6	0.0	0.051	13.1	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
ATP_bind_1	PF03029.17	gi|384434468|ref|YP_005643826.1|	-	2.1e-56	191.4	0.0	2.4e-56	191.2	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
GTP_EFTU	PF00009.27	gi|384434468|ref|YP_005643826.1|	-	1.9e-05	24.3	0.4	0.12	11.9	0.0	2.9	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
CLP1_P	PF16575.5	gi|384434468|ref|YP_005643826.1|	-	2.3e-05	24.3	0.0	0.0024	17.7	0.0	2.4	3	0	0	3	3	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_18	PF13238.6	gi|384434468|ref|YP_005643826.1|	-	6.7e-05	23.4	0.1	0.00027	21.5	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|384434468|ref|YP_005643826.1|	-	6.8e-05	22.6	0.1	0.0074	16.0	0.0	2.8	2	1	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.6	gi|384434468|ref|YP_005643826.1|	-	0.00037	20.9	0.0	0.0023	18.3	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|384434468|ref|YP_005643826.1|	-	0.00058	19.8	0.1	4.4	7.2	0.0	3.7	3	1	0	3	3	3	1	RsgA	GTPase
CbiA	PF01656.23	gi|384434468|ref|YP_005643826.1|	-	0.00058	19.9	0.0	0.00093	19.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
G-alpha	PF00503.20	gi|384434468|ref|YP_005643826.1|	-	0.00099	18.4	0.1	0.23	10.6	0.0	2.3	2	0	0	2	2	2	1	G-protein	alpha	subunit
SRP54	PF00448.22	gi|384434468|ref|YP_005643826.1|	-	0.0013	18.4	0.1	0.02	14.5	0.0	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
DUF87	PF01935.17	gi|384434468|ref|YP_005643826.1|	-	0.0018	18.4	0.1	0.0027	17.8	0.1	1.5	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
cobW	PF02492.19	gi|384434468|ref|YP_005643826.1|	-	0.0022	17.6	0.2	0.17	11.5	0.0	2.5	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|384434468|ref|YP_005643826.1|	-	0.0055	16.8	0.1	0.044	13.9	0.1	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
NACHT	PF05729.12	gi|384434468|ref|YP_005643826.1|	-	0.0073	16.2	0.0	0.019	14.9	0.0	1.7	2	0	0	2	2	2	1	NACHT	domain
MMR_HSR1_Xtn	PF16897.5	gi|384434468|ref|YP_005643826.1|	-	0.0085	16.1	0.6	1.9	8.5	0.1	2.7	2	1	1	3	3	2	1	C-terminal	region	of	MMR_HSR1	domain
MeaB	PF03308.16	gi|384434468|ref|YP_005643826.1|	-	0.01	14.8	0.0	0.09	11.7	0.0	2.0	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_22	PF13401.6	gi|384434468|ref|YP_005643826.1|	-	0.014	15.7	0.0	0.079	13.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.6	gi|384434468|ref|YP_005643826.1|	-	0.014	15.6	0.1	0.02	15.1	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|384434468|ref|YP_005643826.1|	-	0.015	15.1	0.0	0.022	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
KTI12	PF08433.10	gi|384434468|ref|YP_005643826.1|	-	0.015	14.8	0.0	0.03	13.8	0.0	1.5	2	0	0	2	2	1	0	Chromatin	associated	protein	KTI12
AAA_14	PF13173.6	gi|384434468|ref|YP_005643826.1|	-	0.019	15.0	0.3	0.18	11.8	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.20	gi|384434468|ref|YP_005643826.1|	-	0.02	14.8	0.0	0.032	14.1	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
RNA_helicase	PF00910.22	gi|384434468|ref|YP_005643826.1|	-	0.026	14.9	0.0	0.077	13.4	0.0	1.9	2	1	0	2	2	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|384434468|ref|YP_005643826.1|	-	0.033	14.1	0.5	0.27	11.1	0.1	2.4	2	1	0	2	2	2	0	NTPase
AAA_31	PF13614.6	gi|384434468|ref|YP_005643826.1|	-	0.037	14.0	0.7	1.9	8.4	0.1	2.5	1	1	1	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|384434468|ref|YP_005643826.1|	-	0.049	14.1	0.1	0.075	13.6	0.1	1.4	1	1	0	1	1	1	0	ABC	transporter
MobB	PF03205.14	gi|384434468|ref|YP_005643826.1|	-	0.066	13.1	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NB-ARC	PF00931.22	gi|384434468|ref|YP_005643826.1|	-	0.067	12.4	0.0	0.081	12.1	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
ArsA_ATPase	PF02374.15	gi|384434468|ref|YP_005643826.1|	-	0.07	12.3	0.0	0.17	11.1	0.0	1.6	1	0	0	1	1	1	0	Anion-transporting	ATPase
SRPRB	PF09439.10	gi|384434468|ref|YP_005643826.1|	-	0.079	12.4	0.1	8.5	5.8	0.0	2.2	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
AAA_30	PF13604.6	gi|384434468|ref|YP_005643826.1|	-	0.089	12.5	0.0	0.19	11.4	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
AAA_5	PF07728.14	gi|384434468|ref|YP_005643826.1|	-	0.093	12.7	0.0	0.27	11.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_7	PF12775.7	gi|384434468|ref|YP_005643826.1|	-	0.094	12.2	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
PhoH	PF02562.16	gi|384434468|ref|YP_005643826.1|	-	0.1	12.0	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
TrwB_AAD_bind	PF10412.9	gi|384434468|ref|YP_005643826.1|	-	0.13	11.1	0.0	0.2	10.5	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Viral_helicase1	PF01443.18	gi|384434468|ref|YP_005643826.1|	-	0.13	11.9	0.0	0.23	11.1	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_19	PF13245.6	gi|384434468|ref|YP_005643826.1|	-	0.14	12.5	0.1	0.83	10.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|384434468|ref|YP_005643826.1|	-	0.17	11.2	0.0	0.25	10.6	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_33	PF13671.6	gi|384434468|ref|YP_005643826.1|	-	0.18	11.9	0.0	0.25	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
PCNA_C	PF02747.15	gi|384434469|ref|YP_005643827.1|	-	9e-11	42.0	0.3	1.6e-08	34.8	0.0	2.8	3	0	0	3	3	3	2	Proliferating	cell	nuclear	antigen,	C-terminal	domain
PCNA_N	PF00705.18	gi|384434469|ref|YP_005643827.1|	-	6.9e-10	38.7	0.0	1.3e-09	37.8	0.0	1.4	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad1	PF02144.16	gi|384434469|ref|YP_005643827.1|	-	8e-05	21.8	0.1	0.02	14.0	0.0	2.1	1	1	1	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
DUF5118	PF17162.4	gi|384434469|ref|YP_005643827.1|	-	0.065	13.1	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5118)
DNA_primase_S	PF01896.19	gi|384434470|ref|YP_005643828.1|	-	2.9e-14	53.5	0.5	2.2e-06	27.8	0.2	3.2	1	1	1	2	2	2	2	DNA	primase	small	subunit
zf-NADH-PPase	PF09297.11	gi|384434470|ref|YP_005643828.1|	-	0.027	14.1	0.1	0.046	13.4	0.1	1.3	1	0	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|384434470|ref|YP_005643828.1|	-	0.14	12.2	1.2	0.29	11.2	1.2	1.5	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RecR	PF02132.15	gi|384434470|ref|YP_005643828.1|	-	0.21	11.2	1.4	0.35	10.5	1.4	1.4	1	0	0	1	1	1	0	RecR	protein
Ribosomal_L44	PF00935.19	gi|384434472|ref|YP_005643830.1|	-	1.3e-28	99.3	7.3	2e-28	98.7	7.3	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.6	gi|384434472|ref|YP_005643830.1|	-	0.0027	17.0	0.8	1.4	8.5	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384434472|ref|YP_005643830.1|	-	0.0076	15.9	3.9	0.81	9.5	0.4	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_13	PF09855.9	gi|384434472|ref|YP_005643830.1|	-	0.014	15.6	0.8	0.49	10.6	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_4	PF13717.6	gi|384434472|ref|YP_005643830.1|	-	0.022	14.7	4.9	0.17	11.8	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_KTR	PF14205.6	gi|384434472|ref|YP_005643830.1|	-	0.053	13.3	3.4	0.61	9.9	0.1	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
CpXC	PF14353.6	gi|384434472|ref|YP_005643830.1|	-	0.057	13.5	0.3	6.8	6.8	0.1	2.1	2	0	0	2	2	2	0	CpXC	protein
RNA_POL_M_15KD	PF02150.16	gi|384434472|ref|YP_005643830.1|	-	0.063	13.2	1.2	1.6	8.6	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
CxC5	PF18718.1	gi|384434472|ref|YP_005643830.1|	-	0.21	11.7	6.6	0.37	10.9	1.4	2.1	1	1	1	2	2	2	0	CxC5	like	cysteine	cluster	associated	with	KDZ	transposases
TFIIS_C	PF01096.18	gi|384434472|ref|YP_005643830.1|	-	0.43	10.5	3.3	4.2	7.3	0.3	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Ribosomal_S27e	PF01667.17	gi|384434473|ref|YP_005643831.1|	-	2.2e-20	72.1	1.0	2.4e-20	72.0	1.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.12	gi|384434473|ref|YP_005643831.1|	-	6.9e-05	22.3	1.4	9.3e-05	21.9	1.4	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|384434473|ref|YP_005643831.1|	-	0.0012	18.5	4.0	0.2	11.4	1.6	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|384434473|ref|YP_005643831.1|	-	0.0024	17.5	1.8	0.014	15.0	1.8	2.1	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|384434473|ref|YP_005643831.1|	-	0.0029	16.9	1.4	0.076	12.4	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|384434473|ref|YP_005643831.1|	-	0.0037	17.2	1.6	0.0079	16.2	1.8	1.5	1	1	1	2	2	2	1	Transposase	zinc-ribbon	domain
HypA	PF01155.19	gi|384434473|ref|YP_005643831.1|	-	0.004	17.2	0.1	0.0047	16.9	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3797	PF12677.7	gi|384434473|ref|YP_005643831.1|	-	0.011	15.6	2.0	0.31	11.0	2.7	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
TFIIS_C	PF01096.18	gi|384434473|ref|YP_005643831.1|	-	0.015	15.1	2.8	0.76	9.7	2.7	2.3	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
DZR	PF12773.7	gi|384434473|ref|YP_005643831.1|	-	0.018	15.0	1.2	0.035	14.1	1.2	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|384434473|ref|YP_005643831.1|	-	0.025	14.7	1.9	0.07	13.3	1.9	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
PADR1	PF08063.12	gi|384434473|ref|YP_005643831.1|	-	0.032	14.0	1.5	0.52	10.1	0.9	2.0	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
zf-NADH-PPase	PF09297.11	gi|384434473|ref|YP_005643831.1|	-	0.041	13.5	2.7	1.5	8.6	2.8	2.1	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|384434473|ref|YP_005643831.1|	-	0.052	13.3	2.2	2.6	7.9	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ISL3	PF14690.6	gi|384434473|ref|YP_005643831.1|	-	0.055	14.1	1.4	1.6	9.4	1.9	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Nudix_N_2	PF14803.6	gi|384434473|ref|YP_005643831.1|	-	0.056	13.4	1.0	4.8	7.2	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.6	gi|384434473|ref|YP_005643831.1|	-	0.058	13.8	0.5	0.078	13.4	0.5	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF35_N	PF12172.8	gi|384434473|ref|YP_005643831.1|	-	0.062	13.2	0.9	6	6.9	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
RNA_pol_N	PF01194.17	gi|384434473|ref|YP_005643831.1|	-	0.073	13.4	0.5	0.16	12.3	0.1	1.8	2	0	0	2	2	2	0	RNA	polymerases	N	/	8	kDa	subunit
zinc_ribbon_6	PF14599.6	gi|384434473|ref|YP_005643831.1|	-	0.085	12.9	0.1	0.11	12.5	0.1	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|384434473|ref|YP_005643831.1|	-	0.086	12.8	4.2	0.62	10.0	0.5	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|384434473|ref|YP_005643831.1|	-	0.095	12.8	2.6	3.8	7.6	0.0	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
eIF-5_eIF-2B	PF01873.17	gi|384434473|ref|YP_005643831.1|	-	0.098	12.5	0.5	0.13	12.2	0.5	1.2	1	0	0	1	1	1	0	Domain	found	in	IF2B/IF5
CpXC	PF14353.6	gi|384434473|ref|YP_005643831.1|	-	0.12	12.5	1.7	2.6	8.1	0.2	2.0	1	1	1	2	2	2	0	CpXC	protein
Zn_ribbon_SprT	PF17283.2	gi|384434473|ref|YP_005643831.1|	-	0.12	12.3	1.4	6.5	6.8	0.1	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-trcl	PF13451.6	gi|384434473|ref|YP_005643831.1|	-	0.12	12.3	0.8	11	6.1	0.0	2.1	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
DUF1610	PF07754.11	gi|384434473|ref|YP_005643831.1|	-	0.28	11.2	10.2	4	7.5	4.8	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
EIF_2_alpha	PF07541.12	gi|384434474|ref|YP_005643832.1|	-	4.8e-21	75.0	1.5	1.6e-20	73.3	0.2	2.2	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|384434474|ref|YP_005643832.1|	-	1.1e-12	48.0	2.1	2.8e-12	46.8	0.1	2.4	2	0	0	2	2	2	1	S1	RNA	binding	domain
DUF3577	PF12101.8	gi|384434474|ref|YP_005643832.1|	-	0.0084	15.9	1.6	0.37	10.6	0.0	2.9	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF3577)
SEO_C	PF14577.6	gi|384434474|ref|YP_005643832.1|	-	0.019	14.4	0.7	0.037	13.5	0.7	1.4	1	0	0	1	1	1	0	Sieve	element	occlusion	C-terminus
DUF4928	PF16280.5	gi|384434474|ref|YP_005643832.1|	-	0.028	13.7	0.9	0.18	11.1	0.1	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4928)
Nop10p	PF04135.12	gi|384434475|ref|YP_005643833.1|	-	3.3e-25	87.9	1.1	3.6e-25	87.7	1.1	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
STT3	PF02516.14	gi|384434476|ref|YP_005643834.1|	-	2.8e-17	62.8	31.2	6.1e-17	61.7	31.2	1.5	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
CrgA	PF06781.12	gi|384434476|ref|YP_005643834.1|	-	4.5	7.4	5.9	1.4	9.0	0.6	3.1	3	0	0	3	3	3	0	Cell	division	protein	CrgA
Ammonium_transp	PF00909.21	gi|384434479|ref|YP_005643837.1|	-	1.5e-90	303.7	32.7	1.9e-90	303.4	32.7	1.1	1	0	0	1	1	1	1	Ammonium	Transporter	Family
DUF3188	PF11384.8	gi|384434479|ref|YP_005643837.1|	-	0.021	14.6	0.1	0.1	12.3	0.1	2.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
DUF3490	PF11995.8	gi|384434481|ref|YP_005643839.1|	-	0.011	15.6	0.0	0.016	15.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3490)
PhetRS_B1	PF18262.1	gi|384434481|ref|YP_005643839.1|	-	0.073	13.3	0.2	0.19	12.0	0.0	1.7	2	0	0	2	2	2	0	Phe-tRNA	synthetase	beta	subunit	B1	domain
OsmC	PF02566.19	gi|384434482|ref|YP_005643840.1|	-	3.8e-17	62.6	0.0	5.8e-17	62.0	0.0	1.3	1	0	0	1	1	1	1	OsmC-like	protein
TTC5_OB	PF16669.5	gi|384434482|ref|YP_005643840.1|	-	0.047	13.4	0.0	0.065	12.9	0.0	1.3	1	0	0	1	1	1	0	Tetratricopeptide	repeat	protein	5	OB	fold	domain
Lip_prot_lig_C	PF10437.9	gi|384434485|ref|YP_005643843.1|	-	6e-08	32.6	0.9	1.8e-07	31.0	0.9	1.8	1	0	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
BPL_LplA_LipB	PF03099.19	gi|384434485|ref|YP_005643843.1|	-	0.012	15.5	0.0	0.026	14.4	0.0	1.6	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
KMP11	PF03037.16	gi|384434485|ref|YP_005643843.1|	-	0.19	12.5	5.0	0.92	10.3	1.7	2.9	3	1	0	3	3	3	0	Kinetoplastid	membrane	protein	11
GCV_H	PF01597.19	gi|384434486|ref|YP_005643844.1|	-	1.3e-41	141.3	0.9	1.6e-41	141.0	0.9	1.1	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|384434486|ref|YP_005643844.1|	-	1.8e-06	27.7	2.6	1.8e-06	27.7	2.6	1.6	2	0	0	2	2	2	1	Biotin-requiring	enzyme
RnfC_N	PF13375.6	gi|384434486|ref|YP_005643844.1|	-	6.3e-05	22.9	0.2	0.0001	22.2	0.2	1.4	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
HlyD_D23	PF16576.5	gi|384434486|ref|YP_005643844.1|	-	0.0044	16.3	0.2	0.017	14.4	0.0	1.9	1	1	1	2	2	2	1	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
Peptidase_M23	PF01551.22	gi|384434486|ref|YP_005643844.1|	-	0.013	15.7	0.4	1.4	9.1	0.2	2.2	1	1	1	2	2	2	0	Peptidase	family	M23
MFS_1	PF07690.16	gi|384434487|ref|YP_005643845.1|	-	1.4e-06	27.5	51.9	0.00015	20.8	10.1	3.6	1	1	2	3	3	3	3	Major	Facilitator	Superfamily
MarR	PF01047.22	gi|384434488|ref|YP_005643846.1|	-	1.9e-07	30.9	0.1	3.2e-07	30.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|384434488|ref|YP_005643846.1|	-	3.4e-07	30.3	0.2	4.2e-07	30.0	0.2	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|384434488|ref|YP_005643846.1|	-	4.1e-07	29.8	0.4	6.9e-07	29.1	0.4	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|384434488|ref|YP_005643846.1|	-	9.8e-07	28.6	0.5	1.7e-06	27.9	0.5	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.6	gi|384434488|ref|YP_005643846.1|	-	1.6e-06	28.5	0.1	2.1e-06	28.1	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384434488|ref|YP_005643846.1|	-	1.1e-05	24.9	1.0	1.6e-05	24.3	1.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|384434488|ref|YP_005643846.1|	-	1.7e-05	25.1	0.3	2.5e-05	24.5	0.3	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.20	gi|384434488|ref|YP_005643846.1|	-	1.8e-05	24.5	0.2	2.8e-05	23.9	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|384434488|ref|YP_005643846.1|	-	2.2e-05	24.3	0.0	3.1e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|384434488|ref|YP_005643846.1|	-	2.9e-05	23.8	0.3	3.5e-05	23.6	0.3	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_36	PF13730.6	gi|384434488|ref|YP_005643846.1|	-	0.00011	22.1	0.2	0.00016	21.6	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|384434488|ref|YP_005643846.1|	-	0.00021	21.3	0.0	0.00028	20.9	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|384434488|ref|YP_005643846.1|	-	0.00066	19.6	1.1	0.0009	19.2	1.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_Crp_2	PF13545.6	gi|384434488|ref|YP_005643846.1|	-	0.0022	18.0	0.0	0.0028	17.6	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384434488|ref|YP_005643846.1|	-	0.0038	17.4	0.2	0.0072	16.5	0.2	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_CodY	PF08222.11	gi|384434488|ref|YP_005643846.1|	-	0.004	16.7	0.0	0.0072	15.9	0.0	1.4	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|384434488|ref|YP_005643846.1|	-	0.0043	17.0	1.0	0.0082	16.2	0.4	2.0	2	1	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
B-block_TFIIIC	PF04182.12	gi|384434488|ref|YP_005643846.1|	-	0.0056	16.8	0.0	0.0064	16.6	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
Sigma70_r4_2	PF08281.12	gi|384434488|ref|YP_005643846.1|	-	0.013	15.2	0.1	0.017	14.8	0.1	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_54	PF18607.1	gi|384434488|ref|YP_005643846.1|	-	0.022	14.8	0.0	0.035	14.2	0.0	1.4	1	0	0	1	1	1	0	ParA	helix	turn	helix	domain
GntR	PF00392.21	gi|384434488|ref|YP_005643846.1|	-	0.023	14.3	0.1	0.034	13.8	0.1	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_12	PF08461.10	gi|384434488|ref|YP_005643846.1|	-	0.032	14.2	0.9	0.054	13.4	0.9	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_28	PF13518.6	gi|384434488|ref|YP_005643846.1|	-	0.039	14.1	0.0	0.053	13.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HemN_C	PF06969.16	gi|384434488|ref|YP_005643846.1|	-	0.039	14.0	0.0	0.062	13.4	0.0	1.3	1	0	0	1	1	1	0	HemN	C-terminal	domain
LexA_DNA_bind	PF01726.16	gi|384434488|ref|YP_005643846.1|	-	0.058	13.2	0.0	0.092	12.5	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_17	PF12728.7	gi|384434488|ref|YP_005643846.1|	-	0.063	13.5	0.1	0.12	12.5	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|384434488|ref|YP_005643846.1|	-	0.07	13.2	0.0	0.13	12.3	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.6	gi|384434488|ref|YP_005643846.1|	-	0.085	12.7	0.1	0.13	12.1	0.1	1.2	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF3116	PF11313.8	gi|384434488|ref|YP_005643846.1|	-	0.087	12.7	0.2	0.11	12.4	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
SgrR_N	PF12793.7	gi|384434488|ref|YP_005643846.1|	-	0.092	13.0	0.0	0.13	12.5	0.0	1.2	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
FAD_binding_4	PF01565.23	gi|384434489|ref|YP_005643847.1|	-	4e-11	42.8	0.0	6.1e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
AIRC	PF00731.20	gi|384434490|ref|YP_005643848.1|	-	4.6e-69	230.7	0.2	5.1e-69	230.5	0.2	1.0	1	0	0	1	1	1	1	AIR	carboxylase
Fe-ADH_2	PF13685.6	gi|384434490|ref|YP_005643848.1|	-	0.001	18.8	0.0	0.0012	18.6	0.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
PrpR_N	PF06506.11	gi|384434490|ref|YP_005643848.1|	-	0.013	15.1	0.2	0.04	13.5	0.1	2.1	1	1	1	2	2	2	0	Propionate	catabolism	activator
Radical_SAM	PF04055.21	gi|384434490|ref|YP_005643848.1|	-	0.024	15.0	0.0	1.9	8.8	0.0	2.2	1	1	1	2	2	2	0	Radical	SAM	superfamily
DAGK_cat	PF00781.24	gi|384434490|ref|YP_005643848.1|	-	0.039	13.6	0.1	0.089	12.4	0.1	1.7	1	1	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Fe-ADH	PF00465.19	gi|384434490|ref|YP_005643848.1|	-	0.059	12.2	0.0	0.088	11.6	0.0	1.2	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Glutaredoxin	PF00462.24	gi|384434490|ref|YP_005643848.1|	-	0.063	13.5	0.0	0.14	12.4	0.0	1.6	1	0	0	1	1	1	0	Glutaredoxin
DUF4419	PF14388.6	gi|384434490|ref|YP_005643848.1|	-	0.2	11.0	0.0	0.29	10.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4419)
ATP-grasp	PF02222.22	gi|384434491|ref|YP_005643849.1|	-	2.3e-53	180.3	0.0	4.1e-53	179.5	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|384434491|ref|YP_005643849.1|	-	3.2e-15	55.5	1.5	3.4e-15	55.4	0.3	1.7	2	0	0	2	2	2	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
ATP-grasp_3	PF02655.14	gi|384434491|ref|YP_005643849.1|	-	4.9e-05	23.4	0.2	8.9e-05	22.6	0.2	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|384434491|ref|YP_005643849.1|	-	0.0025	17.6	0.2	0.012	15.4	0.0	2.2	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Ribosomal_L24e	PF01246.20	gi|384434491|ref|YP_005643849.1|	-	0.021	15.0	0.1	0.046	13.9	0.1	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L24e
HTH_1	PF00126.27	gi|384434492|ref|YP_005643850.1|	-	1.7e-07	31.1	0.0	3.2e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Nsp1_C	PF05064.13	gi|384434492|ref|YP_005643850.1|	-	0.0016	18.2	0.3	0.0019	18.0	0.3	1.3	1	0	0	1	1	1	1	Nsp1-like	C-terminal	region
MutS_IV	PF05190.18	gi|384434492|ref|YP_005643850.1|	-	0.012	16.0	1.3	0.023	15.1	1.3	1.5	1	0	0	1	1	1	0	MutS	family	domain	IV
DUF2089	PF09862.9	gi|384434492|ref|YP_005643850.1|	-	0.018	15.1	0.3	0.03	14.4	0.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
LZ_Tnp_IS481	PF13011.6	gi|384434492|ref|YP_005643850.1|	-	0.14	12.7	0.0	0.4	11.3	0.0	1.6	1	1	1	2	2	2	0	leucine-zipper	of	insertion	element	IS481
DJ-1_PfpI	PF01965.24	gi|384434493|ref|YP_005643851.1|	-	3.5e-50	170.0	0.0	3.9e-50	169.9	0.0	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|384434493|ref|YP_005643851.1|	-	0.00086	19.1	0.0	0.001	18.9	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|384434493|ref|YP_005643851.1|	-	0.028	14.0	0.0	0.036	13.7	0.0	1.1	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Gly_transf_sug	PF04488.15	gi|384434493|ref|YP_005643851.1|	-	0.18	12.4	0.0	0.39	11.4	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	sugar-binding	region	containing	DXD	motif
DDE_Tnp_1	PF01609.21	gi|384434494|ref|YP_005643852.1|	-	6.8e-16	58.6	0.0	1.3e-15	57.6	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
AA_permease_2	PF13520.6	gi|384434495|ref|YP_005643853.1|	-	5.3e-40	137.5	53.4	5.3e-40	137.5	53.4	3.7	2	1	1	3	3	3	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384434495|ref|YP_005643853.1|	-	1e-23	83.7	65.0	1e-23	83.7	65.0	2.2	1	1	0	2	2	2	1	Amino	acid	permease
Polysacc_synt_C	PF14667.6	gi|384434495|ref|YP_005643853.1|	-	7.5e-05	22.8	14.1	7.5e-05	22.8	14.1	5.3	2	2	2	5	5	5	1	Polysaccharide	biosynthesis	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|384434496|ref|YP_005643854.1|	-	4.5e-22	77.7	0.1	9.1e-22	76.8	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434496|ref|YP_005643854.1|	-	3.7e-18	65.9	2.5	6.4e-18	65.1	0.0	2.4	2	1	0	2	2	2	1	Probable	transposase
DUF2833	PF11090.8	gi|384434496|ref|YP_005643854.1|	-	0.15	12.5	4.5	0.28	11.6	0.4	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2833)
Zn_Tnp_IS1595	PF12760.7	gi|384434496|ref|YP_005643854.1|	-	1.3	9.1	3.7	3.1	7.8	3.7	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384434496|ref|YP_005643854.1|	-	2.2	8.1	5.0	9.6	6.1	5.2	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Resolvase	PF00239.21	gi|384434497|ref|YP_005643855.1|	-	2.7e-16	60.0	0.1	4.4e-16	59.3	0.1	1.4	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384434497|ref|YP_005643855.1|	-	1.1e-09	38.4	0.1	2.1e-09	37.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384434497|ref|YP_005643855.1|	-	8.5e-09	35.4	0.2	1.6e-08	34.5	0.2	1.4	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384434497|ref|YP_005643855.1|	-	7.8e-06	25.6	0.0	1.4e-05	24.8	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384434497|ref|YP_005643855.1|	-	0.00053	19.8	0.2	0.0014	18.4	0.0	1.8	2	0	0	2	2	2	1	MerR	HTH	family	regulatory	protein
Sigma70_ner	PF04546.13	gi|384434497|ref|YP_005643855.1|	-	0.013	15.4	0.2	0.031	14.2	0.2	1.6	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
Cortex-I_coil	PF09304.10	gi|384434497|ref|YP_005643855.1|	-	0.017	15.3	0.3	0.036	14.3	0.3	1.6	1	0	0	1	1	1	0	Cortexillin	I,	coiled	coil
HTH_23	PF13384.6	gi|384434497|ref|YP_005643855.1|	-	0.023	14.5	0.1	0.086	12.7	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_29	PF13551.6	gi|384434497|ref|YP_005643855.1|	-	0.023	14.7	0.1	0.23	11.5	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn	helix
AbiEi_4	PF13338.6	gi|384434497|ref|YP_005643855.1|	-	0.029	14.5	0.0	0.092	12.9	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
FtsH_ext	PF06480.15	gi|384434497|ref|YP_005643855.1|	-	0.18	12.2	1.1	1.3	9.5	1.1	2.2	1	1	0	1	1	1	0	FtsH	Extracellular
DSBA	PF01323.20	gi|384434499|ref|YP_005643857.1|	-	4.1e-22	78.9	1.2	1.1e-12	48.2	0.0	2.0	2	0	0	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_5	PF13743.6	gi|384434499|ref|YP_005643857.1|	-	5.8e-21	75.0	0.0	9e-21	74.4	0.0	1.3	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_4	PF13462.6	gi|384434499|ref|YP_005643857.1|	-	3.6e-10	40.3	0.1	1.4e-05	25.3	0.0	2.1	2	0	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.6	gi|384434499|ref|YP_005643857.1|	-	0.0018	18.7	1.0	0.057	13.9	1.0	2.4	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|384434499|ref|YP_005643857.1|	-	0.0025	17.8	1.2	0.019	15.0	0.0	2.5	3	0	0	3	3	3	1	Thioredoxin	domain
CBS	PF00571.28	gi|384434500|ref|YP_005643858.1|	-	1e-23	83.5	0.5	6.1e-12	45.8	0.0	2.1	2	0	0	2	2	2	2	CBS	domain
SPOUT_MTase_2	PF14419.6	gi|384434500|ref|YP_005643858.1|	-	0.085	12.2	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
Ubie_methyltran	PF01209.18	gi|384434501|ref|YP_005643859.1|	-	0.072	12.4	0.0	3.6	6.8	0.0	2.1	2	0	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
Lyase_1	PF00206.20	gi|384434502|ref|YP_005643860.1|	-	7.1e-110	367.3	0.1	1.3e-109	366.4	0.0	1.4	2	0	0	2	2	2	1	Lyase
FumaraseC_C	PF10415.9	gi|384434502|ref|YP_005643860.1|	-	5.8e-11	42.6	0.0	1.6e-10	41.2	0.0	1.8	1	0	0	1	1	1	1	Fumarase	C	C-terminus
RuvA_C	PF07499.13	gi|384434502|ref|YP_005643860.1|	-	0.0085	16.5	0.1	0.081	13.4	0.0	2.7	3	0	0	3	3	3	1	RuvA,	C-terminal	domain
NUMOD1	PF07453.13	gi|384434502|ref|YP_005643860.1|	-	0.063	13.6	0.1	0.15	12.4	0.1	1.6	1	0	0	1	1	1	0	NUMOD1	domain
ABC_tran	PF00005.27	gi|384434503|ref|YP_005643861.1|	-	2.6e-33	115.4	0.1	4.1e-33	114.8	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|384434503|ref|YP_005643861.1|	-	3e-07	30.1	1.0	3.9e-06	26.5	1.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|384434503|ref|YP_005643861.1|	-	6.2e-07	29.5	0.4	0.0056	16.5	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|384434503|ref|YP_005643861.1|	-	6.4e-05	22.8	0.6	0.004	16.9	0.1	2.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384434503|ref|YP_005643861.1|	-	0.00026	20.6	0.1	0.00046	19.9	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|384434503|ref|YP_005643861.1|	-	0.0078	16.6	0.0	0.011	16.1	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|384434503|ref|YP_005643861.1|	-	0.018	15.0	0.0	0.03	14.2	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_25	PF13481.6	gi|384434503|ref|YP_005643861.1|	-	0.022	14.3	0.1	0.2	11.2	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|384434503|ref|YP_005643861.1|	-	0.028	14.2	0.0	0.48	10.1	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
ATPase_2	PF01637.18	gi|384434503|ref|YP_005643861.1|	-	0.034	14.1	0.3	0.051	13.5	0.2	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_22	PF13401.6	gi|384434503|ref|YP_005643861.1|	-	0.039	14.2	0.2	0.082	13.2	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|384434503|ref|YP_005643861.1|	-	0.044	14.3	0.4	0.044	14.3	0.4	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|384434503|ref|YP_005643861.1|	-	0.046	14.3	0.0	0.17	12.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|384434503|ref|YP_005643861.1|	-	0.082	13.1	0.0	1.6	8.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|384434503|ref|YP_005643861.1|	-	0.085	11.9	0.2	0.21	10.6	0.1	1.7	1	1	1	2	2	2	0	Type	II/IV	secretion	system	protein
SbcCD_C	PF13558.6	gi|384434503|ref|YP_005643861.1|	-	0.12	12.7	0.0	1.2	9.4	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
NB-ARC	PF00931.22	gi|384434503|ref|YP_005643861.1|	-	0.12	11.5	0.0	0.58	9.3	0.0	1.9	2	0	0	2	2	2	0	NB-ARC	domain
NPCBM_assoc	PF10633.9	gi|384434504|ref|YP_005643862.1|	-	2.4e-07	30.9	0.5	0.5	10.6	0.0	5.4	5	0	0	5	5	5	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Rgp1	PF08737.10	gi|384434504|ref|YP_005643862.1|	-	1.7	7.7	6.9	4.3	6.4	0.9	2.5	2	0	0	2	2	2	0	Rgp1
FtsX	PF02687.21	gi|384434505|ref|YP_005643863.1|	-	4.8e-12	46.2	5.8	4.8e-12	46.2	5.8	3.1	3	1	0	3	3	3	1	FtsX-like	permease	family
MacB_PCD	PF12704.7	gi|384434505|ref|YP_005643863.1|	-	6e-11	43.1	3.0	6e-11	43.1	3.0	1.8	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
MarR	PF01047.22	gi|384434506|ref|YP_005643864.1|	-	1.6e-13	50.3	0.0	2.9e-13	49.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|384434506|ref|YP_005643864.1|	-	1.3e-09	38.4	0.1	2.5e-09	37.5	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|384434506|ref|YP_005643864.1|	-	4e-09	36.2	0.0	5.7e-09	35.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|384434506|ref|YP_005643864.1|	-	1.2e-05	25.4	0.2	1.9e-05	24.7	0.2	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|384434506|ref|YP_005643864.1|	-	2.1e-05	24.0	0.0	5.1e-05	22.7	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.16	gi|384434506|ref|YP_005643864.1|	-	2.5e-05	24.6	1.2	0.00018	21.8	1.2	2.1	1	1	0	1	1	1	1	Penicillinase	repressor
TrmB	PF01978.19	gi|384434506|ref|YP_005643864.1|	-	0.00013	21.8	0.4	0.00024	20.9	0.4	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HxlR	PF01638.17	gi|384434506|ref|YP_005643864.1|	-	0.0022	17.8	1.1	0.026	14.4	0.4	2.4	1	1	2	3	3	3	1	HxlR-like	helix-turn-helix
HTH_45	PF14947.6	gi|384434506|ref|YP_005643864.1|	-	0.0041	17.1	0.3	0.018	15.0	0.1	2.1	1	1	1	2	2	2	1	Winged	helix-turn-helix
Rrf2	PF02082.20	gi|384434506|ref|YP_005643864.1|	-	0.0096	16.3	0.1	0.07	13.5	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
PadR	PF03551.14	gi|384434506|ref|YP_005643864.1|	-	0.011	15.7	0.4	0.024	14.6	0.4	1.6	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rio2_N	PF09202.11	gi|384434506|ref|YP_005643864.1|	-	0.041	14.1	0.1	0.097	12.9	0.1	1.6	1	0	0	1	1	1	0	Rio2,	N-terminal
TFIIE_alpha	PF02002.17	gi|384434506|ref|YP_005643864.1|	-	0.078	12.8	3.1	0.21	11.5	0.2	2.3	1	1	1	2	2	2	0	TFIIE	alpha	subunit
DUF501	PF04417.12	gi|384434506|ref|YP_005643864.1|	-	0.18	11.6	0.1	0.37	10.6	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF501)
Nore1-SARAH	PF16517.5	gi|384434506|ref|YP_005643864.1|	-	0.72	9.8	7.6	0.43	10.5	0.6	3.1	2	1	1	3	3	3	0	Novel	Ras	effector	1	C-terminal	SARAH	(Sav/Rassf/Hpo)	domain
CoA_trans	PF01144.23	gi|384434507|ref|YP_005643865.1|	-	1.8e-26	92.9	0.1	2.1e-26	92.7	0.1	1.0	1	0	0	1	1	1	1	Coenzyme	A	transferase
Phage_int_SAM_6	PF18644.1	gi|384434507|ref|YP_005643865.1|	-	0.12	12.4	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Mal_decarbox_Al	PF16957.5	gi|384434507|ref|YP_005643865.1|	-	0.12	10.6	0.1	0.17	10.2	0.1	1.1	1	0	0	1	1	1	0	Malonate	decarboxylase,	alpha	subunit,	transporter
CoA_trans	PF01144.23	gi|384434508|ref|YP_005643866.1|	-	7.7e-35	120.3	0.0	8.8e-35	120.1	0.0	1.0	1	0	0	1	1	1	1	Coenzyme	A	transferase
UPF0300	PF08594.10	gi|384434509|ref|YP_005643867.1|	-	0.066	12.5	0.1	0.079	12.3	0.1	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0300)
bacHORMA_1	PF18138.1	gi|384434509|ref|YP_005643867.1|	-	0.12	12.3	0.1	0.27	11.1	0.0	1.6	1	1	1	2	2	2	0	Bacterial	HORMA	domain	family	1
DUF3341	PF11821.8	gi|384434509|ref|YP_005643867.1|	-	0.21	11.2	0.0	0.28	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3341)
ArnB_C	PF18677.1	gi|384434511|ref|YP_005643869.1|	-	7.2e-25	86.9	4.9	1.3e-24	86.1	4.9	1.4	1	0	0	1	1	1	1	Archaellum	regulatory	network	B,	C-terminal	domain
VWA	PF00092.28	gi|384434511|ref|YP_005643869.1|	-	1.7e-17	64.2	0.0	7.3e-17	62.2	0.0	1.9	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|384434511|ref|YP_005643869.1|	-	1.3e-09	38.7	0.1	2.4e-08	34.6	0.0	2.7	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|384434511|ref|YP_005643869.1|	-	1.2e-07	31.8	0.0	1.4e-05	25.1	0.0	2.9	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
CobT_C	PF11775.8	gi|384434511|ref|YP_005643869.1|	-	0.094	12.4	0.0	0.44	10.2	0.0	2.0	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT	VWA	domain
DNase_II	PF03265.15	gi|384434511|ref|YP_005643869.1|	-	0.15	11.3	0.0	0.26	10.5	0.0	1.3	1	0	0	1	1	1	0	Deoxyribonuclease	II
FHA	PF00498.26	gi|384434512|ref|YP_005643870.1|	-	3.8e-19	68.8	0.1	6.1e-19	68.1	0.1	1.4	1	0	0	1	1	1	1	FHA	domain
Yop-YscD_cpl	PF16697.5	gi|384434512|ref|YP_005643870.1|	-	2.7e-10	40.4	0.1	9.2e-10	38.7	0.0	1.7	2	0	0	2	2	2	1	Inner	membrane	component	of	T3SS,	cytoplasmic	domain
zinc_ribbon_2	PF13240.6	gi|384434512|ref|YP_005643870.1|	-	4.3e-07	29.4	3.1	7e-07	28.8	3.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|384434512|ref|YP_005643870.1|	-	4.2e-05	22.8	0.9	6.4e-05	22.2	0.9	1.3	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.7	gi|384434512|ref|YP_005643870.1|	-	0.0009	19.2	1.7	0.0015	18.5	1.7	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|384434512|ref|YP_005643870.1|	-	0.0015	17.9	1.2	0.0027	17.1	1.2	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Vps36-NZF-N	PF16988.5	gi|384434512|ref|YP_005643870.1|	-	0.014	14.8	1.8	0.088	12.2	1.8	2.4	1	1	0	1	1	1	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
Presenilin	PF01080.17	gi|384434512|ref|YP_005643870.1|	-	0.055	12.2	0.4	0.069	11.9	0.4	1.1	1	0	0	1	1	1	0	Presenilin
Lin-8	PF03353.15	gi|384434512|ref|YP_005643870.1|	-	0.1	12.2	3.5	0.11	12.0	3.5	1.1	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
DUF1176	PF06674.11	gi|384434512|ref|YP_005643870.1|	-	0.15	11.5	4.2	0.51	9.7	4.3	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1176)
DUF2318	PF10080.9	gi|384434512|ref|YP_005643870.1|	-	0.18	11.9	1.1	0.39	10.9	0.8	1.7	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
A2L_zn_ribbon	PF08792.10	gi|384434512|ref|YP_005643870.1|	-	0.57	10.0	2.5	3.2	7.6	2.5	2.1	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Spt20	PF12090.8	gi|384434512|ref|YP_005643870.1|	-	7.8	6.0	17.7	12	5.4	17.7	1.2	1	0	0	1	1	1	0	Spt20	family
Metallophos	PF00149.28	gi|384434513|ref|YP_005643871.1|	-	2.3e-31	109.9	0.7	2.8e-31	109.6	0.7	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384434513|ref|YP_005643871.1|	-	7.6e-07	29.5	0.0	1e-06	29.1	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF4939	PF16297.5	gi|384434513|ref|YP_005643871.1|	-	0.1	12.5	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4939)
ArnB_C	PF18677.1	gi|384434514|ref|YP_005643872.1|	-	2e-31	107.9	9.8	4.4e-31	106.8	9.8	1.6	1	0	0	1	1	1	1	Archaellum	regulatory	network	B,	C-terminal	domain
VWA	PF00092.28	gi|384434514|ref|YP_005643872.1|	-	2.5e-17	63.7	1.8	7.7e-17	62.1	0.1	2.3	2	1	1	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|384434514|ref|YP_005643872.1|	-	2.6e-13	50.5	0.3	1.3e-12	48.3	0.0	2.2	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|384434514|ref|YP_005643872.1|	-	1.3e-06	28.4	0.0	4.3e-06	26.7	0.0	1.8	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|384434514|ref|YP_005643872.1|	-	2.2e-05	24.0	0.0	5.4e-05	22.7	0.0	1.5	2	0	0	2	2	2	1	VWA	domain	containing	CoxE-like	protein
DUF2201	PF09967.9	gi|384434514|ref|YP_005643872.1|	-	0.0042	17.2	0.0	0.015	15.4	0.0	1.9	2	0	0	2	2	2	1	VWA-like	domain	(DUF2201)
vWA-TerF-like	PF10138.9	gi|384434514|ref|YP_005643872.1|	-	0.016	15.3	0.5	0.11	12.6	0.0	2.6	2	2	0	2	2	2	0	vWA	found	in	TerF	C	terminus
DUF402	PF04167.13	gi|384434516|ref|YP_005643874.1|	-	4e-14	52.6	1.9	9.6e-14	51.3	1.9	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
RNase_E_G	PF10150.9	gi|384434516|ref|YP_005643874.1|	-	0.0014	18.1	0.2	0.0032	16.9	0.0	1.7	2	0	0	2	2	2	1	Ribonuclease	E/G	family
Aconitase	PF00330.20	gi|384434517|ref|YP_005643875.1|	-	1.4e-164	548.5	0.0	1.9e-164	548.0	0.0	1.1	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|384434517|ref|YP_005643875.1|	-	5.1e-35	120.6	0.0	1.1e-34	119.6	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF2258	PF10015.9	gi|384434519|ref|YP_005643877.1|	-	4.8e-27	93.9	1.9	9.5e-27	92.9	1.9	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
DivIVA	PF05103.13	gi|384434519|ref|YP_005643877.1|	-	0.038	14.1	1.6	1	9.4	0.2	2.3	2	1	0	2	2	2	0	DivIVA	protein
Fungal_TACC	PF12709.7	gi|384434519|ref|YP_005643877.1|	-	0.55	10.7	5.2	3.3	8.2	0.6	2.7	1	1	2	3	3	3	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
FUN14	PF04930.15	gi|384434520|ref|YP_005643878.1|	-	0.14	12.6	12.5	1.9	9.0	12.5	2.2	1	1	0	1	1	1	0	FUN14	family
YuiB	PF14068.6	gi|384434520|ref|YP_005643878.1|	-	0.14	12.7	8.1	0.18	12.4	8.1	1.2	1	0	0	1	1	1	0	Putative	membrane	protein
DUF4731	PF15875.5	gi|384434520|ref|YP_005643878.1|	-	1.2	9.4	8.8	2.3	8.5	0.3	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4731)
MtrC	PF04211.13	gi|384434520|ref|YP_005643878.1|	-	3.3	6.7	14.6	0.91	8.5	8.1	2.1	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	C
Oxidored_q2	PF00420.24	gi|384434520|ref|YP_005643878.1|	-	6	6.6	14.0	8.1	6.1	14.0	1.3	1	1	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
YqzE	PF14038.6	gi|384434521|ref|YP_005643879.1|	-	0.0041	17.1	3.7	0.0041	17.1	3.7	1.7	2	0	0	2	2	2	1	YqzE-like	protein
DNA_topoisoIV	PF00521.20	gi|384434521|ref|YP_005643879.1|	-	0.046	12.6	1.3	0.049	12.5	1.3	1.0	1	0	0	1	1	1	0	DNA	gyrase/topoisomerase	IV,	subunit	A
Arc_trans_TRASH	PF08394.10	gi|384434522|ref|YP_005643880.1|	-	1.6e-05	25.2	1.1	2e-05	24.8	1.1	1.2	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.14	gi|384434522|ref|YP_005643880.1|	-	4e-05	23.5	2.7	5.7e-05	23.0	2.7	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.13	gi|384434522|ref|YP_005643880.1|	-	0.00017	21.7	0.5	0.00023	21.2	0.5	1.2	1	0	0	1	1	1	1	YHS	domain
A2L_zn_ribbon	PF08792.10	gi|384434522|ref|YP_005643880.1|	-	0.0082	15.8	0.6	0.037	13.7	0.6	1.8	1	1	0	1	1	1	1	A2L	zinc	ribbon	domain
YacG	PF03884.14	gi|384434522|ref|YP_005643880.1|	-	0.0097	15.6	0.5	0.015	15.0	0.5	1.4	1	0	0	1	1	1	1	DNA	gyrase	inhibitor	YacG
FANCL_C	PF11793.8	gi|384434522|ref|YP_005643880.1|	-	0.034	14.3	1.5	2	8.6	0.1	2.1	2	0	0	2	2	2	0	FANCL	C-terminal	domain
VATC	PF18716.1	gi|384434522|ref|YP_005643880.1|	-	0.18	11.7	5.5	0.35	10.7	5.5	1.5	1	1	0	1	1	1	0	Vms1-associating	treble	clef	domain
zf-C6H2	PF15801.5	gi|384434522|ref|YP_005643880.1|	-	0.27	11.6	4.9	0.54	10.6	4.9	1.6	1	1	0	1	1	1	0	zf-MYND-like	zinc	finger,	mRNA-binding
TrmB	PF01978.19	gi|384434523|ref|YP_005643881.1|	-	6.9e-15	54.7	0.2	1.1e-14	54.1	0.2	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|384434523|ref|YP_005643881.1|	-	1.5e-13	50.5	0.8	1.9e-13	50.2	0.8	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR	PF01047.22	gi|384434523|ref|YP_005643881.1|	-	6.4e-11	42.0	0.1	1.1e-10	41.3	0.1	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|384434523|ref|YP_005643881.1|	-	9.5e-10	38.2	0.0	1.5e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|384434523|ref|YP_005643881.1|	-	2.9e-09	36.3	0.4	4.9e-09	35.6	0.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|384434523|ref|YP_005643881.1|	-	3.7e-09	36.9	0.1	7.1e-09	36.0	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|384434523|ref|YP_005643881.1|	-	2.1e-06	27.4	0.1	4.4e-06	26.4	0.1	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|384434523|ref|YP_005643881.1|	-	2.7e-06	27.5	0.1	4.5e-06	26.8	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|384434523|ref|YP_005643881.1|	-	3.2e-06	26.9	0.1	6.7e-06	25.9	0.1	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|384434523|ref|YP_005643881.1|	-	1.7e-05	24.9	0.0	3.4e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
GntR	PF00392.21	gi|384434523|ref|YP_005643881.1|	-	3.6e-05	23.3	0.1	0.00067	19.3	0.0	2.3	2	1	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Penicillinase_R	PF03965.16	gi|384434523|ref|YP_005643881.1|	-	5e-05	23.6	0.2	7.7e-05	23.0	0.2	1.5	1	1	0	1	1	1	1	Penicillinase	repressor
HTH_11	PF08279.12	gi|384434523|ref|YP_005643881.1|	-	9.4e-05	22.3	0.2	0.00015	21.6	0.2	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_Crp_2	PF13545.6	gi|384434523|ref|YP_005643881.1|	-	0.00015	21.7	0.1	0.00029	20.7	0.1	1.5	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
RuvB_C	PF05491.13	gi|384434523|ref|YP_005643881.1|	-	0.0002	21.2	0.1	0.00043	20.1	0.1	1.5	2	0	0	2	2	1	1	RuvB	C-terminal	winged	helix	domain
HTH_Mga	PF08280.11	gi|384434523|ref|YP_005643881.1|	-	0.0005	20.0	0.3	0.0009	19.2	0.3	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF4423	PF14394.6	gi|384434523|ref|YP_005643881.1|	-	0.002	17.9	0.2	0.0032	17.2	0.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
RTP	PF02334.16	gi|384434523|ref|YP_005643881.1|	-	0.0029	18.2	0.5	0.0048	17.5	0.4	1.3	1	1	0	1	1	1	1	Replication	terminator	protein
HTH_20	PF12840.7	gi|384434523|ref|YP_005643881.1|	-	0.0029	17.6	0.1	0.0058	16.7	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|384434523|ref|YP_005643881.1|	-	0.0032	17.4	0.6	0.01	15.7	0.3	2.0	2	1	1	3	3	2	1	Helix-turn-helix	domain
EAP30	PF04157.16	gi|384434523|ref|YP_005643881.1|	-	0.0051	16.1	0.2	0.05	12.9	0.0	2.0	2	0	0	2	2	2	1	EAP30/Vps36	family
SMC_ScpB	PF04079.16	gi|384434523|ref|YP_005643881.1|	-	0.0051	16.4	0.1	0.0075	15.9	0.1	1.3	1	1	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
HTH_9	PF08221.11	gi|384434523|ref|YP_005643881.1|	-	0.0062	16.6	0.5	0.012	15.7	0.2	1.5	2	0	0	2	2	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|384434523|ref|YP_005643881.1|	-	0.0068	16.2	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HxlR	PF01638.17	gi|384434523|ref|YP_005643881.1|	-	0.011	15.6	0.1	0.014	15.3	0.1	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
TBPIP	PF07106.13	gi|384434523|ref|YP_005643881.1|	-	0.014	15.3	0.4	0.036	14.0	0.3	1.8	1	1	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
B-block_TFIIIC	PF04182.12	gi|384434523|ref|YP_005643881.1|	-	0.027	14.6	0.0	0.041	14.1	0.0	1.4	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_IclR	PF09339.10	gi|384434523|ref|YP_005643881.1|	-	0.03	14.1	0.0	0.054	13.3	0.0	1.5	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|384434523|ref|YP_005643881.1|	-	0.031	14.6	0.1	0.05	14.0	0.1	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
FeoC	PF09012.10	gi|384434523|ref|YP_005643881.1|	-	0.035	14.2	0.3	0.081	13.0	0.1	1.7	2	1	0	2	2	1	0	FeoC	like	transcriptional	regulator
Cullin_Nedd8	PF10557.9	gi|384434523|ref|YP_005643881.1|	-	0.039	14.0	0.0	0.095	12.8	0.0	1.6	2	0	0	2	2	1	0	Cullin	protein	neddylation	domain
DUF2551	PF10826.8	gi|384434523|ref|YP_005643881.1|	-	0.041	14.1	0.0	0.074	13.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2551)
HTH_38	PF13936.6	gi|384434523|ref|YP_005643881.1|	-	0.046	13.5	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
KORA	PF16509.5	gi|384434523|ref|YP_005643881.1|	-	0.082	13.2	0.0	0.17	12.2	0.0	1.5	2	0	0	2	2	1	0	TrfB	plasmid	transcriptional	repressor
CcdA	PF07362.12	gi|384434523|ref|YP_005643881.1|	-	0.087	13.3	0.9	0.27	11.7	0.3	1.9	1	1	1	2	2	2	0	Post-segregation	antitoxin	CcdA
HTH_10	PF04967.12	gi|384434523|ref|YP_005643881.1|	-	0.087	12.6	0.0	0.4	10.5	0.0	2.0	2	0	0	2	2	2	0	HTH	DNA	binding	domain
DUF977	PF06163.11	gi|384434523|ref|YP_005643881.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.4	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
Cro	PF09048.10	gi|384434523|ref|YP_005643881.1|	-	0.14	12.2	0.0	0.26	11.4	0.0	1.5	1	0	0	1	1	1	0	Cro
HTH_23	PF13384.6	gi|384434524|ref|YP_005643882.1|	-	0.037	13.8	0.0	0.073	12.9	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
MFS_1	PF07690.16	gi|384434525|ref|YP_005643883.1|	-	3.2e-36	125.0	50.5	3.2e-36	125.0	50.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|384434525|ref|YP_005643883.1|	-	10	4.9	43.0	0.65	8.8	26.5	2.1	1	1	1	2	2	2	0	MFS_1	like	family
GCV_H	PF01597.19	gi|384434527|ref|YP_005643885.1|	-	4e-29	101.0	0.6	4.5e-29	100.8	0.6	1.1	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.22	gi|384434527|ref|YP_005643885.1|	-	0.038	13.8	0.2	0.063	13.1	0.2	1.4	1	0	0	1	1	1	0	Biotin-requiring	enzyme
UB2H	PF14814.6	gi|384434527|ref|YP_005643885.1|	-	0.038	14.0	0.0	0.096	12.7	0.0	1.7	2	0	0	2	2	2	0	Bifunctional	transglycosylase	second	domain
vATP-synt_E	PF01991.18	gi|384434527|ref|YP_005643885.1|	-	0.039	13.4	0.2	0.46	9.9	0.1	2.0	2	0	0	2	2	2	0	ATP	synthase	(E/31	kDa)	subunit
TTRAP	PF14203.6	gi|384434529|ref|YP_005643887.1|	-	0.038	14.0	1.3	0.085	12.9	1.3	1.6	1	0	0	1	1	1	0	Putative	tranposon-transfer	assisting	protein
TrmB	PF01978.19	gi|384434530|ref|YP_005643888.1|	-	1.9e-16	59.7	0.0	2.5e-16	59.3	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|384434530|ref|YP_005643888.1|	-	1.4e-10	40.9	0.0	1.8e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|384434530|ref|YP_005643888.1|	-	1.6e-10	40.7	0.0	2.3e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|384434530|ref|YP_005643888.1|	-	4.1e-08	32.7	0.0	5.9e-08	32.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|384434530|ref|YP_005643888.1|	-	2e-05	24.4	0.0	2.5e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|384434530|ref|YP_005643888.1|	-	3.9e-05	24.1	0.0	5.5e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|384434530|ref|YP_005643888.1|	-	0.00015	21.5	0.0	0.00026	20.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|384434530|ref|YP_005643888.1|	-	0.00055	19.7	0.0	0.00078	19.2	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|384434530|ref|YP_005643888.1|	-	0.00085	19.5	0.0	0.0014	18.8	0.0	1.4	1	1	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.12	gi|384434530|ref|YP_005643888.1|	-	0.0011	18.9	0.0	0.0019	18.1	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
Mga	PF05043.13	gi|384434530|ref|YP_005643888.1|	-	0.0013	19.2	0.0	0.0021	18.6	0.0	1.3	1	0	0	1	1	1	1	Mga	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|384434530|ref|YP_005643888.1|	-	0.0022	17.9	0.0	0.0033	17.4	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.6	gi|384434530|ref|YP_005643888.1|	-	0.0032	17.2	0.0	0.0044	16.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_20	PF12840.7	gi|384434530|ref|YP_005643888.1|	-	0.0033	17.5	0.0	0.0047	17.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|384434530|ref|YP_005643888.1|	-	0.0049	16.7	0.0	0.0075	16.1	0.0	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_9	PF08221.11	gi|384434530|ref|YP_005643888.1|	-	0.0051	16.9	0.0	0.0074	16.4	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
GntR	PF00392.21	gi|384434530|ref|YP_005643888.1|	-	0.0082	15.8	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.9	gi|384434530|ref|YP_005643888.1|	-	0.016	15.3	0.0	0.03	14.4	0.0	1.4	2	0	0	2	2	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_29	PF13551.6	gi|384434530|ref|YP_005643888.1|	-	0.031	14.3	0.0	0.049	13.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
Dimerisation2	PF16864.5	gi|384434530|ref|YP_005643888.1|	-	0.056	13.4	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
Replic_Relax	PF13814.6	gi|384434530|ref|YP_005643888.1|	-	0.075	13.1	0.0	0.098	12.7	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_34	PF13601.6	gi|384434530|ref|YP_005643888.1|	-	0.12	12.5	0.0	0.17	12.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|384434530|ref|YP_005643888.1|	-	0.13	12.2	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1627	PF07789.12	gi|384434530|ref|YP_005643888.1|	-	0.18	11.5	0.0	0.22	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1627)
YHS	PF04945.13	gi|384434531|ref|YP_005643889.1|	-	3.4e-06	27.1	1.0	4.2e-06	26.7	0.5	1.5	1	1	0	1	1	1	1	YHS	domain
POR_N	PF01855.19	gi|384434531|ref|YP_005643889.1|	-	0.18	11.5	0.0	0.18	11.5	0.0	1.0	1	0	0	1	1	1	0	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
TusA	PF01206.17	gi|384434532|ref|YP_005643890.1|	-	1.2e-10	41.1	0.2	1.4e-10	40.8	0.2	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
YjzC	PF14168.6	gi|384434532|ref|YP_005643890.1|	-	0.058	13.8	0.1	0.13	12.7	0.0	1.5	2	0	0	2	2	2	0	YjzC-like	protein
TrmB	PF01978.19	gi|384434533|ref|YP_005643891.1|	-	9.1e-10	38.3	0.0	1.2e-09	37.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|384434533|ref|YP_005643891.1|	-	7.4e-07	29.0	0.1	1.1e-06	28.5	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|384434533|ref|YP_005643891.1|	-	1.2e-06	28.9	0.1	1.7e-06	28.4	0.0	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|384434533|ref|YP_005643891.1|	-	5e-06	26.4	0.1	7.8e-06	25.7	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
RP-C	PF03428.13	gi|384434533|ref|YP_005643891.1|	-	9.9e-06	25.3	0.0	1.3e-05	25.0	0.0	1.4	1	1	0	1	1	1	1	Replication	protein	C	N-terminal	domain
MarR_2	PF12802.7	gi|384434533|ref|YP_005643891.1|	-	1.5e-05	24.7	0.0	2.2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|384434533|ref|YP_005643891.1|	-	6.2e-05	22.9	0.0	7.3e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|384434533|ref|YP_005643891.1|	-	6.9e-05	22.3	0.1	0.00011	21.7	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|384434533|ref|YP_005643891.1|	-	8.7e-05	22.6	0.1	0.0003	20.9	0.1	1.8	1	1	1	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|384434533|ref|YP_005643891.1|	-	9.9e-05	22.1	0.1	0.00019	21.2	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|384434533|ref|YP_005643891.1|	-	0.0001	22.2	0.1	0.00014	21.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|384434533|ref|YP_005643891.1|	-	0.00011	22.2	0.0	0.00017	21.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|384434533|ref|YP_005643891.1|	-	0.00027	20.7	0.2	0.00053	19.7	0.1	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
GntR	PF00392.21	gi|384434533|ref|YP_005643891.1|	-	0.00067	19.3	0.1	0.0012	18.4	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
RuvB_C	PF05491.13	gi|384434533|ref|YP_005643891.1|	-	0.00089	19.1	0.2	0.0014	18.5	0.2	1.3	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
TFIIE_alpha	PF02002.17	gi|384434533|ref|YP_005643891.1|	-	0.0017	18.2	0.2	0.002	17.9	0.2	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Phage_rep_O	PF04492.13	gi|384434533|ref|YP_005643891.1|	-	0.004	17.7	0.0	0.0079	16.8	0.0	1.5	2	0	0	2	2	1	1	Bacteriophage	replication	protein	O
HrcA_DNA-bdg	PF03444.15	gi|384434533|ref|YP_005643891.1|	-	0.0083	15.8	0.1	0.011	15.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_DeoR	PF08220.12	gi|384434533|ref|YP_005643891.1|	-	0.0092	15.7	0.0	0.015	15.0	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.12	gi|384434533|ref|YP_005643891.1|	-	0.014	15.2	0.3	0.033	14.0	0.1	1.7	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Rio2_N	PF09202.11	gi|384434533|ref|YP_005643891.1|	-	0.017	15.3	0.1	0.025	14.8	0.1	1.4	1	1	0	1	1	1	0	Rio2,	N-terminal
Rrf2	PF02082.20	gi|384434533|ref|YP_005643891.1|	-	0.019	15.3	0.0	0.028	14.8	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
TBPIP	PF07106.13	gi|384434533|ref|YP_005643891.1|	-	0.027	14.4	0.0	0.053	13.5	0.0	1.5	1	0	0	1	1	1	0	TBPIP/Hop2	winged	helix	domain
Pox_Rap94	PF03294.14	gi|384434533|ref|YP_005643891.1|	-	0.03	12.4	0.0	0.032	12.3	0.0	1.0	1	0	0	1	1	1	0	RNA	polymerase-associated	transcription	specificity	factor,	Rap94
HTH_IclR	PF09339.10	gi|384434533|ref|YP_005643891.1|	-	0.036	13.9	0.0	0.053	13.3	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
FeoC	PF09012.10	gi|384434533|ref|YP_005643891.1|	-	0.041	13.9	0.0	0.073	13.1	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
SMC_ScpB	PF04079.16	gi|384434533|ref|YP_005643891.1|	-	0.042	13.5	0.3	0.09	12.4	0.3	1.6	1	1	0	1	1	1	0	Segregation	and	condensation	complex	subunit	ScpB
Dimerisation2	PF16864.5	gi|384434533|ref|YP_005643891.1|	-	0.051	13.5	0.1	0.11	12.5	0.0	1.5	2	0	0	2	2	2	0	Dimerisation	domain
CoA_binding_2	PF13380.6	gi|384434534|ref|YP_005643892.1|	-	1.5e-37	128.6	0.1	1.8e-37	128.4	0.1	1.1	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|384434534|ref|YP_005643892.1|	-	7e-05	23.4	0.0	0.00014	22.5	0.0	1.5	1	0	0	1	1	1	1	CoA	binding	domain
BPL_LplA_LipB	PF03099.19	gi|384434535|ref|YP_005643893.1|	-	1.8e-07	31.1	0.0	3.3e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Lip_prot_lig_C	PF10437.9	gi|384434535|ref|YP_005643893.1|	-	0.00014	21.8	0.6	0.00085	19.3	0.0	2.5	2	1	0	2	2	2	1	Bacterial	lipoate	protein	ligase	C-terminus
Radical_SAM	PF04055.21	gi|384434536|ref|YP_005643894.1|	-	1.6e-13	51.4	0.0	9.4e-12	45.6	0.0	2.2	1	1	1	2	2	2	2	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434536|ref|YP_005643894.1|	-	0.015	15.6	0.0	0.023	15.0	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Cas_csx3	PF09620.10	gi|384434536|ref|YP_005643894.1|	-	0.072	13.0	0.0	0.18	11.7	0.0	1.7	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_csx3)
Radical_SAM	PF04055.21	gi|384434537|ref|YP_005643895.1|	-	3.5e-11	43.8	0.6	3.6e-10	40.5	0.1	2.4	3	0	0	3	3	3	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434537|ref|YP_005643895.1|	-	0.0052	17.1	0.0	0.0099	16.1	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
YukD	PF08817.10	gi|384434537|ref|YP_005643895.1|	-	0.16	12.7	0.0	0.48	11.1	0.0	1.8	1	0	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	YukD
LppA	PF16708.5	gi|384434537|ref|YP_005643895.1|	-	0.19	11.6	0.0	0.4	10.6	0.0	1.4	1	0	0	1	1	1	0	Lipoprotein	confined	to	pathogenic	Mycobacterium
Peptidase_M23	PF01551.22	gi|384434538|ref|YP_005643896.1|	-	8.7e-06	25.9	0.0	2.5e-05	24.4	0.0	1.7	2	0	0	2	2	2	1	Peptidase	family	M23
Cue1_U7BR	PF18499.1	gi|384434538|ref|YP_005643896.1|	-	0.099	12.7	0.1	0.2	11.7	0.1	1.5	1	0	0	1	1	1	0	Ubc7p-binding	region	of	Cue1
MbtH	PF03621.13	gi|384434538|ref|YP_005643896.1|	-	0.16	11.4	0.0	10	5.7	0.0	2.3	2	0	0	2	2	2	0	MbtH-like	protein
Hist_deacetyl	PF00850.19	gi|384434539|ref|YP_005643897.1|	-	2.8e-55	187.9	0.0	4.5e-55	187.3	0.0	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
DUF1641	PF07849.11	gi|384434540|ref|YP_005643898.1|	-	4.7e-14	52.0	0.1	1.1e-13	50.8	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
MgtE_N	PF03448.17	gi|384434540|ref|YP_005643898.1|	-	2.4e-05	24.9	29.4	0.069	13.8	2.3	6.2	2	1	4	6	6	6	3	MgtE	intracellular	N	domain
YkyA	PF10368.9	gi|384434540|ref|YP_005643898.1|	-	0.0018	18.0	0.6	0.17	11.6	0.0	3.2	2	2	1	3	3	3	1	Putative	cell-wall	binding	lipoprotein
HSR	PF03172.13	gi|384434540|ref|YP_005643898.1|	-	0.014	15.5	1.1	22	5.3	0.0	4.2	3	1	1	5	5	5	0	HSR	domain
THF_DHG_CYH	PF00763.23	gi|384434540|ref|YP_005643898.1|	-	0.19	12.0	2.9	8	6.8	0.4	2.9	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
hnRNP_Q_AcD	PF18360.1	gi|384434540|ref|YP_005643898.1|	-	0.21	11.6	1.3	20	5.2	0.0	4.0	3	1	1	4	4	4	0	Heterogeneous	nuclear	ribonucleoprotein	Q	acidic	domain
DUF3847	PF12958.7	gi|384434540|ref|YP_005643898.1|	-	1.2	9.3	10.3	36	4.5	0.1	5.5	4	2	3	7	7	7	0	Protein	of	unknown	function	(DUF3847)
RSN1_7TM	PF02714.15	gi|384434540|ref|YP_005643898.1|	-	1.9	7.7	7.7	20	4.4	0.2	3.8	3	1	1	4	4	4	0	Calcium-dependent	channel,	7TM	region,	putative	phosphate
TFIID_20kDa	PF03847.13	gi|384434540|ref|YP_005643898.1|	-	7.7	7.1	10.8	1.3	9.6	1.3	4.1	4	2	1	5	5	5	0	Transcription	initiation	factor	TFIID	subunit	A
PIN_5	PF08745.11	gi|384434541|ref|YP_005643899.1|	-	0.0012	18.3	0.1	0.0026	17.2	0.1	1.5	2	0	0	2	2	2	1	PINc	domain	ribonuclease
Lipase_3	PF01764.25	gi|384434541|ref|YP_005643899.1|	-	0.036	13.9	0.0	0.043	13.7	0.0	1.1	1	0	0	1	1	1	0	Lipase	(class	3)
Thioredoxin_3	PF13192.6	gi|384434542|ref|YP_005643900.1|	-	1.1e-13	51.0	0.1	1.9e-13	50.2	0.1	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin	PF00085.20	gi|384434542|ref|YP_005643900.1|	-	0.0012	18.8	0.2	0.0026	17.7	0.0	1.6	2	0	0	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|384434542|ref|YP_005643900.1|	-	0.0019	18.4	0.4	0.0019	18.4	0.4	1.8	2	0	0	2	2	2	1	Glutaredoxin
Thioredoxin_9	PF14595.6	gi|384434542|ref|YP_005643900.1|	-	0.0077	16.0	0.1	0.012	15.4	0.1	1.2	1	0	0	1	1	1	1	Thioredoxin
DUF836	PF05768.14	gi|384434542|ref|YP_005643900.1|	-	0.017	15.5	0.3	0.12	12.8	0.1	2.0	2	0	0	2	2	2	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_2	PF13098.6	gi|384434542|ref|YP_005643900.1|	-	0.036	14.5	0.2	0.073	13.5	0.2	1.8	1	1	0	1	1	1	0	Thioredoxin-like	domain
Pyr_redox_2	PF07992.14	gi|384434544|ref|YP_005643902.1|	-	3.9e-49	167.5	0.7	4.9e-49	167.1	0.7	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384434544|ref|YP_005643902.1|	-	3.9e-18	65.8	4.5	2.7e-14	53.5	0.1	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|384434544|ref|YP_005643902.1|	-	5.8e-16	58.7	0.0	1e-15	58.0	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|384434544|ref|YP_005643902.1|	-	5.8e-12	45.5	3.8	5.2e-11	42.3	3.8	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|384434544|ref|YP_005643902.1|	-	6.2e-10	38.7	4.3	4.3e-05	22.8	0.1	3.2	3	1	0	3	3	3	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|384434544|ref|YP_005643902.1|	-	1.5e-08	33.8	2.6	0.0017	17.1	0.8	3.9	4	0	0	4	4	4	3	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384434544|ref|YP_005643902.1|	-	4.1e-08	33.0	0.8	4e-05	23.2	0.1	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.14	gi|384434544|ref|YP_005643902.1|	-	8.6e-08	31.4	0.3	1.3e-05	24.2	0.1	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_binding_3	PF01494.19	gi|384434544|ref|YP_005643902.1|	-	3.4e-07	29.8	0.3	0.00061	19.1	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|384434544|ref|YP_005643902.1|	-	8.5e-07	28.4	7.8	2.1e-05	23.8	1.3	3.5	3	1	0	4	4	4	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384434544|ref|YP_005643902.1|	-	3.9e-06	26.3	0.3	0.007	15.7	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_8	PF13450.6	gi|384434544|ref|YP_005643902.1|	-	6.2e-06	26.3	6.1	0.002	18.3	1.4	2.4	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|384434544|ref|YP_005643902.1|	-	8.4e-05	22.3	8.9	0.16	11.6	2.3	3.7	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|384434544|ref|YP_005643902.1|	-	0.00022	20.5	1.1	0.0047	16.1	0.0	2.5	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|384434544|ref|YP_005643902.1|	-	0.0011	18.2	6.0	0.0025	17.1	0.1	3.0	3	1	1	4	4	4	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|384434544|ref|YP_005643902.1|	-	0.0014	17.8	0.3	0.21	10.6	0.0	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
3HCDH_N	PF02737.18	gi|384434544|ref|YP_005643902.1|	-	0.014	15.3	0.4	0.94	9.3	0.0	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384434544|ref|YP_005643902.1|	-	0.02	14.5	2.4	2.9	7.4	0.1	2.4	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.16	gi|384434544|ref|YP_005643902.1|	-	0.055	13.1	0.6	21	4.7	0.0	3.3	3	0	0	3	3	3	0	Ketopantoate	reductase	PanE/ApbA
GDI	PF00996.18	gi|384434544|ref|YP_005643902.1|	-	0.086	11.3	0.1	0.13	10.7	0.1	1.2	1	0	0	1	1	1	0	GDP	dissociation	inhibitor
DrsE	PF02635.15	gi|384434545|ref|YP_005643903.1|	-	5.3e-23	81.6	0.0	6.1e-23	81.4	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.6	gi|384434545|ref|YP_005643903.1|	-	1.4e-14	54.2	0.6	1.8e-06	27.9	0.2	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
Pox_A8	PF04745.12	gi|384434545|ref|YP_005643903.1|	-	0.13	11.3	0.0	0.17	10.9	0.0	1.1	1	0	0	1	1	1	0	VITF-3	subunit	protein
DrsE_2	PF13686.6	gi|384434546|ref|YP_005643904.1|	-	3.8e-28	98.3	0.8	7.8e-27	94.1	0.8	1.9	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|384434546|ref|YP_005643904.1|	-	5.7e-09	36.4	0.0	1.5e-08	35.0	0.0	1.7	1	1	0	1	1	1	1	DsrE/DsrF-like	family
SinI	PF08671.10	gi|384434546|ref|YP_005643904.1|	-	0.067	13.0	0.1	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	Anti-repressor	SinI
TusA	PF01206.17	gi|384434547|ref|YP_005643905.1|	-	5.4e-25	87.0	0.0	6.1e-25	86.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|384434547|ref|YP_005643905.1|	-	0.031	14.1	0.0	0.052	13.4	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
Fer4_17	PF13534.6	gi|384434548|ref|YP_005643906.1|	-	1.1e-07	32.3	6.8	2.3e-07	31.2	6.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384434548|ref|YP_005643906.1|	-	1.5e-07	31.7	6.4	7.6e-07	29.5	6.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384434548|ref|YP_005643906.1|	-	4.7e-07	29.8	6.2	9e-07	28.9	6.2	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384434548|ref|YP_005643906.1|	-	1.9e-06	27.9	8.4	9.5e-06	25.7	9.0	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384434548|ref|YP_005643906.1|	-	1.5e-05	25.5	9.0	3.8e-05	24.2	9.2	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384434548|ref|YP_005643906.1|	-	0.00074	20.4	8.1	0.0024	18.7	8.1	1.9	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|384434548|ref|YP_005643906.1|	-	0.00088	19.2	12.4	0.023	14.8	3.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|384434548|ref|YP_005643906.1|	-	0.0034	17.8	11.1	0.0044	17.4	1.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Ca_bind_SSO6904	PF18249.1	gi|384434548|ref|YP_005643906.1|	-	0.059	13.7	0.2	0.53	10.7	0.1	2.3	2	0	0	2	2	2	0	Calcium	binding	protein	SSO6904
Fer4_21	PF14697.6	gi|384434548|ref|YP_005643906.1|	-	0.085	13.0	9.7	0.69	10.1	9.8	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|384434548|ref|YP_005643906.1|	-	0.13	12.1	6.8	0.18	11.6	0.4	2.3	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_6	PF12837.7	gi|384434548|ref|YP_005643906.1|	-	0.17	12.0	12.9	1.1	9.5	2.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|384434548|ref|YP_005643906.1|	-	0.37	10.7	16.9	0.17	11.8	2.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|384434548|ref|YP_005643906.1|	-	7.3	7.5	12.4	2.9	8.8	1.6	2.4	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|384434549|ref|YP_005643907.1|	-	4.7e-08	33.1	0.0	4.2e-06	26.9	0.0	3.0	2	1	0	2	2	2	2	Cysteine-rich	domain
Pyr_redox_2	PF07992.14	gi|384434550|ref|YP_005643908.1|	-	1.5e-16	60.5	0.2	3.2e-16	59.4	0.2	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|384434550|ref|YP_005643908.1|	-	1e-08	34.3	0.9	0.00053	18.8	0.3	2.1	1	1	1	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|384434550|ref|YP_005643908.1|	-	1.2e-08	34.5	0.3	1.4e-06	27.7	0.2	2.1	1	1	1	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|384434550|ref|YP_005643908.1|	-	3.4e-08	33.1	0.7	2.2e-07	30.5	0.6	2.0	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|384434550|ref|YP_005643908.1|	-	4.7e-07	29.5	1.5	1.6e-06	27.8	0.4	2.0	1	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384434550|ref|YP_005643908.1|	-	2e-06	27.3	2.5	2.3e-05	23.8	2.5	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|384434550|ref|YP_005643908.1|	-	2.5e-06	26.8	0.1	0.0013	17.9	0.0	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|384434550|ref|YP_005643908.1|	-	8.1e-06	26.0	0.0	1.8e-05	24.9	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|384434550|ref|YP_005643908.1|	-	1.4e-05	25.6	0.9	0.001	19.5	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384434550|ref|YP_005643908.1|	-	1.6e-05	24.7	1.0	0.00028	20.6	0.1	2.5	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|384434550|ref|YP_005643908.1|	-	1.6e-05	24.2	0.2	3.3e-05	23.3	0.1	1.6	1	1	0	1	1	1	1	Thi4	family
Amino_oxidase	PF01593.24	gi|384434550|ref|YP_005643908.1|	-	2.8e-05	23.6	0.0	0.015	14.6	0.0	2.9	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.6	gi|384434550|ref|YP_005643908.1|	-	4.5e-05	23.5	0.1	0.059	13.4	0.0	3.0	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|384434550|ref|YP_005643908.1|	-	0.0014	17.8	0.3	0.0029	16.7	0.1	1.5	1	1	0	1	1	1	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|384434550|ref|YP_005643908.1|	-	0.003	16.9	0.1	0.0069	15.7	0.1	1.6	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_7	PF13241.6	gi|384434550|ref|YP_005643908.1|	-	0.0085	16.5	0.2	0.023	15.1	0.2	1.8	1	1	0	1	1	1	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|384434550|ref|YP_005643908.1|	-	0.015	15.3	0.1	0.03	14.4	0.1	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.12	gi|384434550|ref|YP_005643908.1|	-	0.026	14.1	0.2	0.06	12.9	0.2	1.7	1	1	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
K_oxygenase	PF13434.6	gi|384434550|ref|YP_005643908.1|	-	0.034	13.3	0.2	0.7	9.0	0.0	2.3	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
TrkA_N	PF02254.18	gi|384434550|ref|YP_005643908.1|	-	0.057	13.7	0.1	0.21	11.8	0.0	2.0	2	0	0	2	2	2	0	TrkA-N	domain
NAGLU_N	PF12971.7	gi|384434550|ref|YP_005643908.1|	-	0.061	13.1	0.1	0.38	10.6	0.1	2.1	2	0	0	2	2	2	0	Alpha-N-acetylglucosaminidase	(NAGLU)	N-terminal	domain
Acetyltransf_11	PF13720.6	gi|384434551|ref|YP_005643909.1|	-	0.13	12.8	0.1	0.34	11.4	0.0	1.7	1	1	0	1	1	1	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
Fer4_8	PF13183.6	gi|384434552|ref|YP_005643910.1|	-	7.4e-09	35.9	7.1	1.2e-08	35.2	7.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384434552|ref|YP_005643910.1|	-	8.2e-09	35.5	9.5	2.9e-08	33.8	10.0	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384434552|ref|YP_005643910.1|	-	1e-07	32.4	3.9	1.7e-07	31.6	3.9	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384434552|ref|YP_005643910.1|	-	1.5e-06	28.6	6.7	2.5e-06	28.0	6.7	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384434552|ref|YP_005643910.1|	-	0.0046	17.1	11.5	0.032	14.3	12.2	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384434552|ref|YP_005643910.1|	-	0.022	15.7	12.6	0.029	15.3	3.0	2.2	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_22	PF17179.4	gi|384434552|ref|YP_005643910.1|	-	0.024	15.5	4.9	0.84	10.5	0.4	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384434552|ref|YP_005643910.1|	-	0.031	14.8	13.6	0.46	11.1	3.5	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|384434552|ref|YP_005643910.1|	-	0.075	12.8	0.6	0.075	12.8	0.6	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_21	PF14697.6	gi|384434552|ref|YP_005643910.1|	-	0.12	12.5	10.0	0.7	10.1	10.0	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384434552|ref|YP_005643910.1|	-	0.16	11.8	12.7	0.28	11.1	2.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384434552|ref|YP_005643910.1|	-	0.26	11.5	13.6	0.17	12.1	1.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
IZUMO	PF15005.6	gi|384434552|ref|YP_005643910.1|	-	5.8	7.4	8.7	3.7	8.1	1.2	2.9	3	0	0	3	3	3	0	Izumo	sperm-egg	fusion,	Ig	domain-associated
Fer4_18	PF13746.6	gi|384434552|ref|YP_005643910.1|	-	6.5	7.0	8.3	1.4	9.1	1.0	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|384434552|ref|YP_005643910.1|	-	8.4	7.0	8.3	13	6.5	2.5	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
CCG	PF02754.16	gi|384434553|ref|YP_005643911.1|	-	1.6e-30	105.1	0.5	1.8e-16	60.1	0.1	2.6	3	0	0	3	3	3	2	Cysteine-rich	domain
Amidohydro_2	PF04909.14	gi|384434554|ref|YP_005643912.1|	-	0.00011	22.1	0.0	0.16	11.7	0.0	2.1	1	1	1	2	2	2	2	Amidohydrolase
WYL_2	PF10902.8	gi|384434555|ref|YP_005643913.1|	-	0.028	14.8	0.1	0.17	12.2	0.0	2.2	2	0	0	2	2	2	0	WYL_2,	Sm-like	SH3	beta-barrel	fold
Na_H_Exchanger	PF00999.21	gi|384434556|ref|YP_005643914.1|	-	1.4e-45	155.7	44.9	1.8e-45	155.4	44.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF2499	PF10693.9	gi|384434556|ref|YP_005643914.1|	-	0.016	15.5	0.6	0.076	13.3	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2499)
Cytochrome-c551	PF10643.9	gi|384434556|ref|YP_005643914.1|	-	0.058	13.0	4.1	0.14	11.8	4.1	1.7	1	0	0	1	1	1	0	Photosystem	P840	reaction-centre	cytochrome	c-551
DUF5383	PF17355.2	gi|384434556|ref|YP_005643914.1|	-	0.26	11.7	3.6	0.53	10.7	3.6	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5383)
UPF0139	PF03669.13	gi|384434556|ref|YP_005643914.1|	-	0.34	10.8	1.7	0.57	10.1	0.2	2.2	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0139)
MFS_1	PF07690.16	gi|384434557|ref|YP_005643915.1|	-	2.7e-27	95.6	42.9	1.4e-19	70.3	32.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
H_PPase	PF03030.16	gi|384434557|ref|YP_005643915.1|	-	0.0091	14.7	0.8	0.0091	14.7	0.8	2.1	3	0	0	3	3	3	1	Inorganic	H+	pyrophosphatase
CBP_BcsG	PF11658.8	gi|384434557|ref|YP_005643915.1|	-	0.07	11.5	0.3	0.14	10.5	0.3	1.4	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsG
Pro-kuma_activ	PF09286.11	gi|384434558|ref|YP_005643916.1|	-	8e-25	87.8	0.2	1.7e-24	86.7	0.2	1.5	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
Big_7	PF17957.1	gi|384434558|ref|YP_005643916.1|	-	2.4e-05	25.0	5.2	2.4e-05	25.0	5.2	5.4	7	0	0	7	7	7	1	Bacterial	Ig	domain
TcfC	PF16967.5	gi|384434558|ref|YP_005643916.1|	-	0.00078	18.9	1.1	0.00078	18.9	1.1	3.8	3	0	0	3	3	3	1	E-set	like	domain
Peptidase_S8	PF00082.22	gi|384434558|ref|YP_005643916.1|	-	0.0013	18.0	1.0	0.0038	16.5	1.0	1.7	1	0	0	1	1	1	1	Subtilase	family
MG2	PF01835.19	gi|384434558|ref|YP_005643916.1|	-	0.039	14.4	0.0	0.25	11.8	0.0	2.4	3	0	0	3	3	3	0	MG2	domain
MFS_1	PF07690.16	gi|384434559|ref|YP_005643917.1|	-	3.9e-31	108.3	38.6	3.9e-31	108.3	38.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
ABC2_membrane	PF01061.24	gi|384434560|ref|YP_005643918.1|	-	1.5e-11	44.2	33.5	1.5e-11	44.2	33.5	1.6	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|384434560|ref|YP_005643918.1|	-	3.3e-06	26.4	36.5	3.3e-06	26.4	36.5	2.0	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ATP-synt_J	PF04911.12	gi|384434560|ref|YP_005643918.1|	-	0.011	15.3	0.1	0.027	14.0	0.1	1.6	1	0	0	1	1	1	0	ATP	synthase	j	chain
ABC_tran	PF00005.27	gi|384434561|ref|YP_005643919.1|	-	1.7e-32	112.8	0.0	2.5e-32	112.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384434561|ref|YP_005643919.1|	-	3.4e-14	53.3	0.1	1.6e-09	38.0	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384434561|ref|YP_005643919.1|	-	7.3e-06	25.6	0.0	0.051	13.0	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|384434561|ref|YP_005643919.1|	-	5.8e-05	23.0	0.1	0.11	12.2	0.0	2.5	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|384434561|ref|YP_005643919.1|	-	0.00015	22.2	0.0	0.00021	21.7	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|384434561|ref|YP_005643919.1|	-	0.0007	19.5	0.0	0.0014	18.6	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
NB-ARC	PF00931.22	gi|384434561|ref|YP_005643919.1|	-	0.0011	18.2	0.5	0.008	15.4	0.0	2.2	2	1	0	2	2	2	1	NB-ARC	domain
IstB_IS21	PF01695.17	gi|384434561|ref|YP_005643919.1|	-	0.0012	18.6	0.1	1.3	8.7	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|384434561|ref|YP_005643919.1|	-	0.0018	18.0	0.0	0.0034	17.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.6	gi|384434561|ref|YP_005643919.1|	-	0.0021	18.1	0.0	0.013	15.5	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|384434561|ref|YP_005643919.1|	-	0.0022	18.0	0.0	0.0049	16.9	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
DUF4162	PF13732.6	gi|384434561|ref|YP_005643919.1|	-	0.0029	18.3	0.0	0.0096	16.6	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA	PF00004.29	gi|384434561|ref|YP_005643919.1|	-	0.003	18.0	0.4	0.0092	16.4	0.3	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|384434561|ref|YP_005643919.1|	-	0.0049	17.4	0.6	0.0082	16.7	0.6	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|384434561|ref|YP_005643919.1|	-	0.0075	16.5	1.1	0.066	13.5	1.1	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|384434561|ref|YP_005643919.1|	-	0.0076	16.4	0.2	0.016	15.4	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|384434561|ref|YP_005643919.1|	-	0.013	15.2	0.1	0.024	14.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|384434561|ref|YP_005643919.1|	-	0.02	14.8	0.1	0.044	13.7	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
SH3_4	PF06347.13	gi|384434561|ref|YP_005643919.1|	-	0.022	14.6	0.0	0.075	12.9	0.0	1.8	2	0	0	2	2	2	0	Bacterial	SH3	domain
NTPase_1	PF03266.15	gi|384434561|ref|YP_005643919.1|	-	0.033	14.1	0.7	0.22	11.4	0.2	2.4	2	0	0	2	2	2	0	NTPase
RNA_helicase	PF00910.22	gi|384434561|ref|YP_005643919.1|	-	0.037	14.4	0.1	0.23	11.8	0.0	2.1	2	0	0	2	2	2	0	RNA	helicase
AAA_25	PF13481.6	gi|384434561|ref|YP_005643919.1|	-	0.041	13.5	0.1	0.19	11.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|384434561|ref|YP_005643919.1|	-	0.047	13.3	0.0	0.12	12.0	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|384434561|ref|YP_005643919.1|	-	0.054	13.5	0.2	0.31	11.0	0.0	2.1	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Rad17	PF03215.15	gi|384434561|ref|YP_005643919.1|	-	0.059	13.3	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	Rad17	P-loop	domain
Roc	PF08477.13	gi|384434561|ref|YP_005643919.1|	-	0.077	13.2	0.0	0.19	12.0	0.0	1.6	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Spa1_C	PF18218.1	gi|384434561|ref|YP_005643919.1|	-	0.083	13.3	0.1	0.21	12.0	0.1	1.7	1	0	0	1	1	1	0	Lantibiotic	immunity	protein	Spa1	C-terminal	domain
Tricorn_C1	PF14684.6	gi|384434561|ref|YP_005643919.1|	-	0.1	12.7	0.1	19	5.4	0.0	2.5	2	0	0	2	2	2	0	Tricorn	protease	C1	domain
AAA_7	PF12775.7	gi|384434561|ref|YP_005643919.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
PPK2	PF03976.14	gi|384434561|ref|YP_005643919.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
AAA_24	PF13479.6	gi|384434561|ref|YP_005643919.1|	-	0.12	12.1	0.1	0.22	11.2	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|384434561|ref|YP_005643919.1|	-	0.16	12.2	0.0	0.66	10.3	0.0	2.1	2	1	0	2	2	1	0	Putative	exonuclease	SbcCD,	C	subunit
PALP	PF00291.25	gi|384434562|ref|YP_005643920.1|	-	4.3e-40	138.0	0.0	5.2e-40	137.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
MFS_1	PF07690.16	gi|384434563|ref|YP_005643921.1|	-	3.2e-30	105.3	34.4	1.4e-18	66.9	17.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384434563|ref|YP_005643921.1|	-	4.9e-17	61.9	31.1	1.9e-14	53.4	15.4	2.9	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|384434563|ref|YP_005643921.1|	-	0.016	13.6	9.4	0.23	9.8	1.0	2.4	2	1	0	2	2	2	0	Transmembrane	secretion	effector
Amidinotransf	PF02274.17	gi|384434564|ref|YP_005643922.1|	-	5.5e-81	272.3	0.0	6.2e-81	272.1	0.0	1.0	1	0	0	1	1	1	1	Amidinotransferase
PAD_porph	PF04371.15	gi|384434564|ref|YP_005643922.1|	-	0.046	13.0	0.0	0.065	12.5	0.0	1.4	1	0	0	1	1	1	0	Porphyromonas-type	peptidyl-arginine	deiminase
NusG_II	PF07009.11	gi|384434564|ref|YP_005643922.1|	-	0.058	13.6	0.1	0.13	12.5	0.1	1.6	1	0	0	1	1	1	0	NusG	domain	II
Polyketide_cyc2	PF10604.9	gi|384434565|ref|YP_005643923.1|	-	6.4e-05	23.2	0.0	7.1e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DDE_Tnp_1	PF01609.21	gi|384434566|ref|YP_005643924.1|	-	2.6e-15	56.7	0.0	4.5e-15	55.9	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
HTH_AsnC-type	PF13404.6	gi|384434568|ref|YP_005643926.1|	-	0.022	14.6	0.0	0.073	12.9	0.0	1.9	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
PmbA_TldD	PF01523.16	gi|384434569|ref|YP_005643927.1|	-	1.9e-38	133.0	0.4	2.6e-38	132.5	0.4	1.2	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.16	gi|384434570|ref|YP_005643928.1|	-	1.1e-28	100.9	0.0	1.5e-28	100.4	0.0	1.3	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Acyl-CoA_dh_N	PF02771.16	gi|384434571|ref|YP_005643929.1|	-	4.4e-29	101.4	0.0	7.8e-29	100.6	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|384434571|ref|YP_005643929.1|	-	7.3e-21	74.2	0.0	1.2e-20	73.4	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_1	PF00441.24	gi|384434571|ref|YP_005643929.1|	-	2.7e-14	53.6	0.8	2.6e-08	34.2	0.2	2.2	1	1	1	2	2	2	2	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_ox_N	PF14749.6	gi|384434571|ref|YP_005643929.1|	-	0.017	15.7	0.0	0.045	14.3	0.0	1.7	2	0	0	2	2	2	0	Acyl-coenzyme	A	oxidase	N-terminal
MaoC_dehydratas	PF01575.19	gi|384434572|ref|YP_005643930.1|	-	2.1e-18	66.1	0.0	2.6e-18	65.8	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|384434572|ref|YP_005643930.1|	-	6.6e-08	32.8	0.0	8e-08	32.5	0.0	1.1	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
S1	PF00575.23	gi|384434572|ref|YP_005643930.1|	-	0.059	13.7	0.1	0.13	12.7	0.1	1.5	1	0	0	1	1	1	0	S1	RNA	binding	domain
AAA_14	PF13173.6	gi|384434573|ref|YP_005643931.1|	-	9.4e-31	106.6	1.8	1.3e-30	106.1	0.2	2.1	2	0	0	2	2	2	1	AAA	domain
DUF4143	PF13635.6	gi|384434573|ref|YP_005643931.1|	-	1.3e-10	41.5	0.9	3.4e-10	40.1	0.3	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4143)
ATPase_2	PF01637.18	gi|384434573|ref|YP_005643931.1|	-	4.2e-06	26.9	13.2	0.0037	17.2	0.3	3.8	2	1	2	4	4	4	3	ATPase	domain	predominantly	from	Archaea
MMR_HSR1	PF01926.23	gi|384434573|ref|YP_005643931.1|	-	0.0023	18.0	0.2	0.0079	16.3	0.0	2.1	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|384434573|ref|YP_005643931.1|	-	0.0033	17.7	0.0	0.19	12.0	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|384434573|ref|YP_005643931.1|	-	0.011	16.1	0.1	0.073	13.4	0.1	2.2	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.6	gi|384434573|ref|YP_005643931.1|	-	0.032	14.6	0.0	0.63	10.4	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|384434573|ref|YP_005643931.1|	-	0.08	13.0	0.0	0.16	12.0	0.0	1.7	1	0	0	1	1	1	0	Dynamin	family
AAA_29	PF13555.6	gi|384434573|ref|YP_005643931.1|	-	0.14	11.9	0.0	0.4	10.4	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
TCO89	PF10452.9	gi|384434573|ref|YP_005643931.1|	-	0.22	10.4	0.1	0.33	9.9	0.1	1.2	1	0	0	1	1	1	0	TORC1	subunit	TCO89
Acyl-CoA_dh_1	PF00441.24	gi|384434574|ref|YP_005643932.1|	-	1.8e-09	38.0	0.0	2.3e-08	34.4	0.0	2.1	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|384434574|ref|YP_005643932.1|	-	0.0037	17.5	0.0	0.0063	16.8	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Lactamase_B	PF00753.27	gi|384434575|ref|YP_005643933.1|	-	9.5e-27	94.3	0.0	1.1e-26	94.0	0.0	1.0	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384434575|ref|YP_005643933.1|	-	6.5e-05	22.5	0.0	8.4e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|384434575|ref|YP_005643933.1|	-	0.046	13.1	0.0	0.072	12.5	0.0	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
PDEase_II	PF02112.15	gi|384434575|ref|YP_005643933.1|	-	0.073	12.2	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
HAD_2	PF13419.6	gi|384434576|ref|YP_005643934.1|	-	1.6e-12	47.8	0.1	1.2e-11	45.0	0.1	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384434576|ref|YP_005643934.1|	-	4e-05	24.0	0.0	0.0028	18.0	0.0	2.1	1	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DUF5039	PF16442.5	gi|384434576|ref|YP_005643934.1|	-	0.00019	21.1	0.3	0.00047	19.8	0.1	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5039)
Hydrolase_like	PF13242.6	gi|384434576|ref|YP_005643934.1|	-	0.00083	19.4	0.0	0.0014	18.6	0.0	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
Put_Phosphatase	PF06888.12	gi|384434576|ref|YP_005643934.1|	-	0.18	11.1	0.0	0.23	10.8	0.0	1.3	1	0	0	1	1	1	0	Putative	Phosphatase
NTP_transf_2	PF01909.23	gi|384434577|ref|YP_005643935.1|	-	8.4e-10	38.8	0.2	1.6e-09	37.9	0.2	1.6	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384434577|ref|YP_005643935.1|	-	1.2e-08	34.9	0.8	2.4e-08	34.0	0.4	1.7	1	1	1	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
Deltameth_res	PF16020.5	gi|384434577|ref|YP_005643935.1|	-	0.12	12.2	0.1	1.6	8.6	0.1	2.4	3	0	0	3	3	3	0	Deltamethrin	resistance
HEPN	PF05168.14	gi|384434578|ref|YP_005643936.1|	-	2.8e-24	85.5	0.4	3.3e-24	85.3	0.4	1.0	1	0	0	1	1	1	1	HEPN	domain
MFS_1	PF07690.16	gi|384434579|ref|YP_005643937.1|	-	3.9e-59	200.3	57.9	3.5e-57	193.9	51.0	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384434579|ref|YP_005643937.1|	-	7.7e-08	31.6	16.3	7.7e-08	31.6	16.3	2.9	2	2	1	3	3	3	3	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|384434579|ref|YP_005643937.1|	-	0.018	13.4	23.5	0.0087	14.5	8.6	2.4	2	1	0	2	2	2	0	Transmembrane	secretion	effector
Transposase_mut	PF00872.18	gi|384434580|ref|YP_005643938.1|	-	7e-16	58.1	4.1	1.9e-13	50.0	1.2	2.2	1	1	1	2	2	2	2	Transposase,	Mutator	family
MULE	PF10551.9	gi|384434580|ref|YP_005643938.1|	-	0.001	19.4	0.0	0.002	18.5	0.0	1.5	1	0	0	1	1	1	1	MULE	transposase	domain
DDE_Tnp_IS1595	PF12762.7	gi|384434580|ref|YP_005643938.1|	-	0.12	12.3	0.2	4.6	7.2	0.0	2.4	2	0	0	2	2	2	0	ISXO2-like	transposase	domain
ABC_tran	PF00005.27	gi|384434581|ref|YP_005643939.1|	-	7.2e-31	107.5	0.0	1.7e-30	106.3	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|384434581|ref|YP_005643939.1|	-	5.1e-11	43.2	0.3	2e-10	41.4	0.2	2.1	2	0	0	2	2	1	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|384434581|ref|YP_005643939.1|	-	4.9e-10	39.4	0.0	1.1e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|384434581|ref|YP_005643939.1|	-	8e-07	29.5	0.0	2.5e-06	27.9	0.0	1.9	2	0	0	2	2	1	1	CysA	C-terminal	regulatory	domain
AAA_21	PF13304.6	gi|384434581|ref|YP_005643939.1|	-	2.7e-06	27.4	0.0	0.073	12.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|384434581|ref|YP_005643939.1|	-	4.7e-05	23.6	0.0	0.00019	21.6	0.0	2.1	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.19	gi|384434581|ref|YP_005643939.1|	-	0.00093	18.7	0.4	0.023	14.1	0.4	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|384434581|ref|YP_005643939.1|	-	0.0011	19.0	0.7	0.029	14.3	0.0	2.6	3	0	0	3	3	3	1	RsgA	GTPase
AAA_23	PF13476.6	gi|384434581|ref|YP_005643939.1|	-	0.0025	18.3	0.5	0.012	16.1	0.0	2.2	3	0	0	3	3	2	1	AAA	domain
AAA_16	PF13191.6	gi|384434581|ref|YP_005643939.1|	-	0.0028	18.0	0.0	0.0049	17.3	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
NTPase_1	PF03266.15	gi|384434581|ref|YP_005643939.1|	-	0.0076	16.2	0.2	0.27	11.1	0.0	2.5	2	0	0	2	2	2	1	NTPase
ATPase_2	PF01637.18	gi|384434581|ref|YP_005643939.1|	-	0.0083	16.1	0.1	0.017	15.0	0.1	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|384434581|ref|YP_005643939.1|	-	0.0085	15.8	0.0	0.019	14.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|384434581|ref|YP_005643939.1|	-	0.012	15.3	0.0	0.028	14.1	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|384434581|ref|YP_005643939.1|	-	0.015	15.1	0.0	0.028	14.1	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Rad17	PF03215.15	gi|384434581|ref|YP_005643939.1|	-	0.019	14.9	0.0	0.053	13.4	0.0	1.7	2	0	0	2	2	1	0	Rad17	P-loop	domain
AAA_33	PF13671.6	gi|384434581|ref|YP_005643939.1|	-	0.033	14.4	0.2	16	5.7	0.0	3.1	3	0	0	3	3	3	0	AAA	domain
NACHT	PF05729.12	gi|384434581|ref|YP_005643939.1|	-	0.033	14.1	0.0	0.077	12.9	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_22	PF13401.6	gi|384434581|ref|YP_005643939.1|	-	0.046	14.0	0.0	0.1	12.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|384434581|ref|YP_005643939.1|	-	0.081	13.3	0.2	0.15	12.4	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|384434581|ref|YP_005643939.1|	-	0.096	12.7	0.0	1.9	8.6	0.0	2.5	2	1	1	3	3	3	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_28	PF13521.6	gi|384434581|ref|YP_005643939.1|	-	0.13	12.5	0.0	0.46	10.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Mur_ligase_M	PF08245.12	gi|384434581|ref|YP_005643939.1|	-	0.15	12.0	0.0	0.4	10.6	0.0	1.7	2	0	0	2	2	2	0	Mur	ligase	middle	domain
AAA	PF00004.29	gi|384434581|ref|YP_005643939.1|	-	0.15	12.5	0.4	0.46	10.9	0.4	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|384434581|ref|YP_005643939.1|	-	0.16	12.4	0.0	0.38	11.2	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
CSD2	PF17876.1	gi|384434581|ref|YP_005643939.1|	-	0.17	12.1	1.6	3.7	7.8	0.1	2.9	3	0	0	3	3	3	0	Cold	shock	domain
BPD_transp_1	PF00528.22	gi|384434582|ref|YP_005643940.1|	-	5.7e-13	49.0	21.8	5.7e-13	49.0	21.8	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384434583|ref|YP_005643941.1|	-	3.4e-14	53.0	22.8	3.4e-14	53.0	22.8	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
TM_PBP2_N	PF16296.5	gi|384434583|ref|YP_005643941.1|	-	3.4	7.9	9.5	0.34	11.1	2.8	2.3	2	0	0	2	2	2	0	N-terminal	of	TM	subunit	in	PBP-dependent	ABC	transporters
Glyco_hydro_57	PF03065.15	gi|384434584|ref|YP_005643942.1|	-	4.7e-43	147.6	1.9	3.2e-36	125.2	0.0	2.3	1	1	1	2	2	2	2	Glycosyl	hydrolase	family	57
TcfC	PF16967.5	gi|384434584|ref|YP_005643942.1|	-	0.00074	18.9	0.3	0.0034	16.8	0.1	2.2	2	0	0	2	2	2	1	E-set	like	domain
DUF3255	PF11631.8	gi|384434584|ref|YP_005643942.1|	-	0.034	14.0	0.2	0.1	12.5	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3255)
AA_permease_2	PF13520.6	gi|384434585|ref|YP_005643943.1|	-	3.4e-09	36.1	58.0	4.4e-09	35.7	58.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384434585|ref|YP_005643943.1|	-	5e-08	32.0	55.1	4e-06	25.7	55.1	2.9	1	1	0	1	1	1	1	Amino	acid	permease
Na_Ca_ex	PF01699.24	gi|384434586|ref|YP_005643944.1|	-	6.8e-33	113.8	37.0	7.7e-18	64.9	18.8	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Form-deh_trans	PF09163.11	gi|384434586|ref|YP_005643944.1|	-	2.1	8.2	5.2	0.39	10.5	0.7	2.2	2	0	0	2	2	2	0	Formate	dehydrogenase	N,	transmembrane
PilJ_C	PF18223.1	gi|384434587|ref|YP_005643945.1|	-	0.023	15.2	0.6	0.023	15.2	0.6	2.7	3	1	1	4	4	4	0	Pili	PilJ	C-terminal	domain
Hjc	PF01870.18	gi|384434588|ref|YP_005643946.1|	-	9.8e-32	108.8	0.0	1.3e-31	108.4	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
Endonuc-MspI	PF09208.10	gi|384434588|ref|YP_005643946.1|	-	0.05	13.0	0.1	0.12	11.8	0.1	1.6	1	1	1	2	2	2	0	Restriction	endonuclease	MspI
AHJR-like	PF18743.1	gi|384434588|ref|YP_005643946.1|	-	0.065	12.8	0.0	0.29	10.7	0.0	1.9	1	1	1	2	2	2	0	REase_AHJR-like
RecU	PF03838.14	gi|384434588|ref|YP_005643946.1|	-	0.066	13.2	0.2	0.08	12.9	0.2	1.1	1	0	0	1	1	1	0	Recombination	protein	U
Aminotran_1_2	PF00155.21	gi|384434589|ref|YP_005643947.1|	-	3.1e-51	174.6	0.0	4.1e-51	174.3	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|384434589|ref|YP_005643947.1|	-	4.7e-12	45.5	0.0	7.6e-12	44.9	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|384434589|ref|YP_005643947.1|	-	1.2e-06	27.3	0.0	1.6e-06	26.9	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Alliinase_C	PF04864.13	gi|384434589|ref|YP_005643947.1|	-	2.4e-05	23.4	0.0	0.00016	20.7	0.1	1.9	2	0	0	2	2	2	1	Allinase
Beta_elim_lyase	PF01212.21	gi|384434589|ref|YP_005643947.1|	-	0.00014	21.3	0.0	0.00022	20.6	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.17	gi|384434589|ref|YP_005643947.1|	-	0.00041	19.8	0.0	0.00057	19.3	0.0	1.1	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_3	PF00202.21	gi|384434589|ref|YP_005643947.1|	-	0.22	10.1	0.0	0.44	9.1	0.0	1.4	1	0	0	1	1	1	0	Aminotransferase	class-III
Methyltransf_11	PF08241.12	gi|384434591|ref|YP_005643949.1|	-	3.3e-15	56.5	0.0	4.6e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384434591|ref|YP_005643949.1|	-	6e-12	45.6	0.3	9.2e-12	45.0	0.3	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384434591|ref|YP_005643949.1|	-	7.6e-12	45.4	0.0	1.2e-11	44.7	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384434591|ref|YP_005643949.1|	-	7.1e-11	42.7	0.0	1.4e-10	41.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384434591|ref|YP_005643949.1|	-	3.3e-09	37.4	0.1	6.1e-09	36.5	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384434591|ref|YP_005643949.1|	-	2.5e-06	27.1	0.0	4.3e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|384434591|ref|YP_005643949.1|	-	0.00072	19.5	0.0	0.001	19.0	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Ubie_methyltran	PF01209.18	gi|384434591|ref|YP_005643949.1|	-	0.00091	18.6	0.1	0.0016	17.8	0.1	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
DREV	PF05219.12	gi|384434591|ref|YP_005643949.1|	-	0.0069	15.5	0.0	0.0087	15.2	0.0	1.1	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_2	PF00891.18	gi|384434591|ref|YP_005643949.1|	-	0.012	14.9	0.2	0.017	14.4	0.2	1.4	1	1	0	1	1	1	0	O-methyltransferase	domain
MetW	PF07021.12	gi|384434591|ref|YP_005643949.1|	-	0.069	12.7	0.0	0.096	12.3	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_32	PF13679.6	gi|384434591|ref|YP_005643949.1|	-	0.12	12.4	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF4127	PF13552.6	gi|384434591|ref|YP_005643949.1|	-	0.12	10.9	0.0	0.14	10.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4127)
Resolvase	PF00239.21	gi|384434593|ref|YP_005643951.1|	-	1.5e-16	60.8	0.3	2.2e-16	60.3	0.3	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384434593|ref|YP_005643951.1|	-	4.6e-12	45.9	0.1	1e-11	44.8	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384434593|ref|YP_005643951.1|	-	4e-09	36.4	0.2	8.5e-09	35.4	0.2	1.6	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384434593|ref|YP_005643951.1|	-	1.8e-06	27.6	0.0	3.4e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384434593|ref|YP_005643951.1|	-	0.00011	21.9	3.1	0.00016	21.4	0.0	2.4	3	0	0	3	3	3	1	MerR	HTH	family	regulatory	protein
NTPase_1	PF03266.15	gi|384434593|ref|YP_005643951.1|	-	0.017	15.0	1.4	0.024	14.6	1.4	1.3	1	0	0	1	1	1	0	NTPase
AbiEi_4	PF13338.6	gi|384434593|ref|YP_005643951.1|	-	0.025	14.7	0.0	0.09	12.9	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_23	PF13384.6	gi|384434593|ref|YP_005643951.1|	-	0.027	14.3	0.0	0.087	12.6	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
CLP1_P	PF16575.5	gi|384434593|ref|YP_005643951.1|	-	0.045	13.5	0.2	0.089	12.6	0.1	1.5	1	1	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
FtsH_ext	PF06480.15	gi|384434593|ref|YP_005643951.1|	-	0.07	13.5	0.8	1.4	9.3	0.7	2.2	1	1	0	1	1	1	0	FtsH	Extracellular
HTH_29	PF13551.6	gi|384434593|ref|YP_005643951.1|	-	0.086	12.9	0.1	0.24	11.5	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_26	PF13443.6	gi|384434593|ref|YP_005643951.1|	-	0.099	13.1	0.0	5.7	7.5	0.0	2.5	2	0	0	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
DnaB_C	PF03796.15	gi|384434593|ref|YP_005643951.1|	-	0.14	11.5	1.9	1.6	8.0	0.0	2.0	1	1	1	2	2	2	0	DnaB-like	helicase	C	terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|384434594|ref|YP_005643952.1|	-	7.7e-22	77.0	0.1	1.8e-21	75.8	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434594|ref|YP_005643952.1|	-	5.1e-15	55.8	2.2	1e-14	54.8	0.0	2.4	2	1	0	2	2	2	1	Probable	transposase
FAM76	PF16046.5	gi|384434594|ref|YP_005643952.1|	-	0.24	10.7	2.0	0.2	11.0	0.1	1.8	2	0	0	2	2	2	0	FAM76	protein
DUF2833	PF11090.8	gi|384434594|ref|YP_005643952.1|	-	0.39	11.1	3.7	0.28	11.6	0.4	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2833)
Zn_Tnp_IS1595	PF12760.7	gi|384434594|ref|YP_005643952.1|	-	1	9.4	3.4	2.3	8.2	3.4	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384434594|ref|YP_005643952.1|	-	2.2	8.1	5.0	9.6	6.1	5.2	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Isochorismatase	PF00857.20	gi|384434595|ref|YP_005643953.1|	-	7.5e-35	120.7	0.0	9.1e-35	120.4	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
DUF973	PF06157.11	gi|384434596|ref|YP_005643954.1|	-	1.8e-77	260.4	30.1	3e-77	259.8	30.1	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
TALPID3	PF15324.6	gi|384434596|ref|YP_005643954.1|	-	0.085	10.5	2.8	0.11	10.1	2.8	1.0	1	0	0	1	1	1	0	Hedgehog	signalling	target
DUF3488	PF11992.8	gi|384434596|ref|YP_005643954.1|	-	0.19	10.6	9.2	0.028	13.4	4.9	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3488)
DUF2427	PF10348.9	gi|384434596|ref|YP_005643954.1|	-	2	8.2	8.2	2.3	8.0	6.2	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2427)
DUF2070	PF09843.9	gi|384434596|ref|YP_005643954.1|	-	2.4	6.3	22.5	3.1	6.0	22.5	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
DUF996	PF06195.13	gi|384434596|ref|YP_005643954.1|	-	9.8	6.5	32.9	2.8e+02	1.8	32.7	2.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF996)
MAP	PF03642.13	gi|384434597|ref|YP_005643955.1|	-	0.056	13.7	1.0	5.5	7.4	0.1	3.6	4	0	0	4	4	4	0	MAP	domain
OrfB_Zn_ribbon	PF07282.11	gi|384434599|ref|YP_005643957.1|	-	1.5e-26	92.1	0.0	2.8e-26	91.2	0.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434599|ref|YP_005643957.1|	-	1.3e-15	57.6	0.6	4.3e-15	56.0	0.1	2.0	2	0	0	2	2	2	1	Probable	transposase
zf-ribbon_3	PF13248.6	gi|384434599|ref|YP_005643957.1|	-	0.013	14.9	1.3	0.15	11.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384434599|ref|YP_005643957.1|	-	0.014	14.9	0.1	4.4	6.9	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF1610	PF07754.11	gi|384434599|ref|YP_005643957.1|	-	0.34	10.9	2.3	0.83	9.7	2.3	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_2	PF13240.6	gi|384434599|ref|YP_005643957.1|	-	0.87	9.4	3.1	13	5.7	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|384434599|ref|YP_005643957.1|	-	1.1	9.2	3.4	4.2	7.4	0.3	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
DAO	PF01266.24	gi|384434600|ref|YP_005643958.1|	-	1.1e-12	48.3	0.1	1e-11	45.0	0.1	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|384434600|ref|YP_005643958.1|	-	7.6e-12	45.2	0.0	1.8e-11	44.0	0.0	1.5	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|384434600|ref|YP_005643958.1|	-	6.7e-11	42.3	0.1	3.3e-10	40.0	0.1	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|384434600|ref|YP_005643958.1|	-	9.8e-10	38.1	0.4	2.5e-05	23.5	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|384434600|ref|YP_005643958.1|	-	4.1e-08	32.3	0.4	0.00015	20.6	0.1	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox	PF00070.27	gi|384434600|ref|YP_005643958.1|	-	4.8e-08	33.5	0.9	0.0044	17.5	0.1	3.2	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|384434600|ref|YP_005643958.1|	-	5.1e-08	32.5	0.2	2.9e-05	23.5	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|384434600|ref|YP_005643958.1|	-	2.1e-07	30.4	1.6	1.5e-06	27.6	0.1	2.5	3	0	0	3	3	3	1	Thi4	family
FAD_oxidored	PF12831.7	gi|384434600|ref|YP_005643958.1|	-	2.4e-06	27.2	0.6	6.3e-05	22.5	0.1	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|384434600|ref|YP_005643958.1|	-	2.2e-05	23.8	0.1	0.00013	21.4	0.1	1.9	2	0	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|384434600|ref|YP_005643958.1|	-	3.7e-05	23.0	4.5	0.0011	18.2	0.1	2.5	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
GDI	PF00996.18	gi|384434600|ref|YP_005643958.1|	-	4.8e-05	22.1	0.5	0.1	11.1	0.1	2.6	2	1	1	3	3	3	2	GDP	dissociation	inhibitor
40S_S4_C	PF16121.5	gi|384434600|ref|YP_005643958.1|	-	0.014	15.1	0.0	1.6	8.4	0.0	2.5	2	0	0	2	2	2	0	40S	ribosomal	protein	S4	C-terminus
MCRA	PF06100.11	gi|384434600|ref|YP_005643958.1|	-	0.014	14.2	0.1	1.3	7.7	0.0	2.1	2	0	0	2	2	2	0	MCRA	family
UDPG_MGDP_dh_N	PF03721.14	gi|384434600|ref|YP_005643958.1|	-	0.022	14.3	0.1	0.047	13.3	0.1	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|384434600|ref|YP_005643958.1|	-	0.046	12.8	0.4	0.13	11.2	0.1	1.8	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Pyr_redox_3	PF13738.6	gi|384434600|ref|YP_005643958.1|	-	0.051	12.8	2.2	0.065	12.5	0.4	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Glu_dehyd_C	PF16912.5	gi|384434600|ref|YP_005643958.1|	-	0.072	12.6	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Glucose	dehydrogenase	C-terminus
DDE_Tnp_2	PF04693.12	gi|384434601|ref|YP_005643959.1|	-	1.9e-178	592.6	2.1	2.2e-178	592.4	2.1	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434601|ref|YP_005643959.1|	-	2.4e-05	23.8	0.0	4.6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434601|ref|YP_005643959.1|	-	0.0011	18.7	0.0	0.0018	17.9	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384434601|ref|YP_005643959.1|	-	0.046	13.4	0.1	0.086	12.6	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
CHAD	PF05235.14	gi|384434602|ref|YP_005643960.1|	-	2.3e-08	34.3	0.1	0.0014	18.6	0.0	2.3	1	1	1	2	2	2	2	CHAD	domain
SPATIAL	PF15256.6	gi|384434602|ref|YP_005643960.1|	-	0.036	14.4	0.0	0.054	13.8	0.0	1.3	1	0	0	1	1	1	0	SPATIAL
CDC13_N	PF16853.5	gi|384434602|ref|YP_005643960.1|	-	0.048	13.2	2.3	0.35	10.4	0.7	2.1	1	1	1	2	2	2	0	Cell	division	control	protein	13	N-terminus
DUF3243	PF11588.8	gi|384434602|ref|YP_005643960.1|	-	0.054	13.8	0.1	0.88	9.9	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3243)
Thymidylate_kin	PF02223.17	gi|384434603|ref|YP_005643961.1|	-	1.1e-12	48.1	0.0	1.6e-12	47.5	0.0	1.3	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_17	PF13207.6	gi|384434603|ref|YP_005643961.1|	-	0.0022	18.4	0.0	0.0063	17.0	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|384434603|ref|YP_005643961.1|	-	0.062	13.0	0.1	0.089	12.5	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|384434604|ref|YP_005643962.1|	-	1.1e-28	100.2	0.1	4.2e-28	98.3	0.1	1.7	1	1	0	1	1	1	1	Thymidylate	kinase
dNK	PF01712.19	gi|384434604|ref|YP_005643962.1|	-	5e-05	23.3	0.4	9.2e-05	22.4	0.4	1.5	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_18	PF13238.6	gi|384434604|ref|YP_005643962.1|	-	0.00033	21.2	0.0	0.00065	20.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Hfx_Cass5	PF18287.1	gi|384434604|ref|YP_005643962.1|	-	0.085	13.1	0.1	0.23	11.7	0.1	1.7	1	0	0	1	1	1	0	Integron	Cassette	Protein	Hfx_Cass5
Ppx-GppA	PF02541.16	gi|384434605|ref|YP_005643963.1|	-	6e-38	130.9	0.1	9.4e-38	130.3	0.1	1.2	1	0	0	1	1	1	1	Ppx/GppA	phosphatase	family
TruB-C_2	PF09157.11	gi|384434605|ref|YP_005643963.1|	-	0.013	15.5	0.1	0.3	11.2	0.0	2.4	2	0	0	2	2	2	0	Pseudouridine	synthase	II	TruB,	C-terminal
Peptidase_C8	PF03569.13	gi|384434605|ref|YP_005643963.1|	-	0.081	12.5	0.1	0.15	11.6	0.1	1.3	1	0	0	1	1	1	0	Peptidase	family	C8
His_Phos_1	PF00300.22	gi|384434606|ref|YP_005643964.1|	-	8.7e-14	51.7	0.0	3.9e-12	46.3	0.0	2.0	1	1	1	2	2	2	2	Histidine	phosphatase	superfamily	(branch	1)
ACT	PF01842.25	gi|384434606|ref|YP_005643964.1|	-	0.066	13.0	0.1	0.22	11.3	0.0	2.0	1	1	1	2	2	2	0	ACT	domain
TPP_enzyme_C	PF02775.21	gi|384434607|ref|YP_005643965.1|	-	8.5e-19	67.8	0.1	2.3e-18	66.4	0.1	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|384434607|ref|YP_005643965.1|	-	0.0026	17.0	0.3	0.0043	16.3	0.0	1.4	2	0	0	2	2	2	1	1-deoxy-D-xylulose-5-phosphate	synthase
POR_N	PF01855.19	gi|384434608|ref|YP_005643966.1|	-	1.8e-70	237.3	1.2	2.3e-70	236.9	1.2	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|384434608|ref|YP_005643966.1|	-	3e-35	120.6	0.1	6e-35	119.6	0.1	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|384434608|ref|YP_005643966.1|	-	7.6e-05	22.6	0.0	0.00018	21.4	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Fer4	PF00037.27	gi|384434609|ref|YP_005643967.1|	-	1.7e-12	46.6	14.4	8.3e-08	31.7	5.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|384434609|ref|YP_005643967.1|	-	1.6e-09	37.4	12.3	8.9e-05	22.4	4.0	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384434609|ref|YP_005643967.1|	-	1.9e-09	37.5	7.7	2.4e-09	37.2	7.7	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384434609|ref|YP_005643967.1|	-	2.7e-08	34.3	19.8	3.8e-07	30.6	10.8	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384434609|ref|YP_005643967.1|	-	4.5e-08	32.7	12.9	5.2e-05	23.1	3.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|384434609|ref|YP_005643967.1|	-	6.4e-07	29.4	9.1	0.00034	20.7	1.8	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384434609|ref|YP_005643967.1|	-	1.1e-06	29.5	8.0	0.00057	20.8	2.6	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|384434609|ref|YP_005643967.1|	-	4.5e-06	26.7	9.9	3e-05	24.1	10.9	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384434609|ref|YP_005643967.1|	-	4.6e-05	23.6	12.3	0.019	15.5	2.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|384434609|ref|YP_005643967.1|	-	0.0008	20.1	7.6	0.015	16.0	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|384434609|ref|YP_005643967.1|	-	0.0058	17.5	19.5	0.1	13.6	8.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384434609|ref|YP_005643967.1|	-	0.0076	16.8	12.0	0.39	11.3	2.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384434609|ref|YP_005643967.1|	-	0.016	15.6	13.0	0.078	13.4	2.5	2.1	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|384434609|ref|YP_005643967.1|	-	0.03	15.2	0.7	0.03	15.2	0.7	2.1	1	1	2	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|384434609|ref|YP_005643967.1|	-	0.12	12.9	10.7	0.45	11.1	2.6	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|384434609|ref|YP_005643967.1|	-	1.1	9.4	10.5	3.2	8.0	2.4	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|384434610|ref|YP_005643968.1|	-	5.1e-38	130.9	0.1	6.1e-38	130.6	0.1	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Ald_Xan_dh_C2	PF02738.18	gi|384434611|ref|YP_005643969.1|	-	1e-112	377.4	0.0	6.3e-111	371.5	0.0	2.1	1	1	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384434611|ref|YP_005643969.1|	-	7.7e-13	48.8	0.0	2.7e-12	47.0	0.0	2.0	2	0	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
PASTA	PF03793.19	gi|384434611|ref|YP_005643969.1|	-	0.08	12.8	0.0	0.28	11.0	0.0	1.9	1	0	0	1	1	1	0	PASTA	domain
DUF948	PF06103.11	gi|384434612|ref|YP_005643970.1|	-	0.00016	21.9	0.7	0.00024	21.3	0.7	1.2	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF948)
FliD_C	PF07195.12	gi|384434612|ref|YP_005643970.1|	-	0.00018	21.0	0.9	0.00018	21.0	0.9	1.1	1	0	0	1	1	1	1	Flagellar	hook-associated	protein	2	C-terminus
KxDL	PF10241.9	gi|384434612|ref|YP_005643970.1|	-	0.00038	20.7	1.6	0.00054	20.2	1.6	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein
Bacillus_HBL	PF05791.11	gi|384434612|ref|YP_005643970.1|	-	0.00044	20.1	1.2	0.00049	20.0	1.2	1.2	1	0	0	1	1	1	1	Bacillus	haemolytic	enterotoxin	(HBL)
DUF4618	PF15397.6	gi|384434612|ref|YP_005643970.1|	-	0.00054	19.5	3.9	0.00054	19.5	3.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4618)
DUF3958	PF13125.6	gi|384434612|ref|YP_005643970.1|	-	0.0024	18.1	8.3	0.0034	17.6	8.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3958)
OmpH	PF03938.14	gi|384434612|ref|YP_005643970.1|	-	0.003	17.9	1.9	0.0037	17.6	1.9	1.2	1	0	0	1	1	1	1	Outer	membrane	protein	(OmpH-like)
Hemagglutinin	PF00509.18	gi|384434612|ref|YP_005643970.1|	-	0.0035	15.8	0.9	0.0035	15.8	0.9	1.0	1	0	0	1	1	1	1	Haemagglutinin
UvrD_C	PF13361.6	gi|384434612|ref|YP_005643970.1|	-	0.0039	16.6	1.8	0.0044	16.4	1.8	1.0	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
IMD	PF08397.11	gi|384434612|ref|YP_005643970.1|	-	0.0045	16.4	0.2	0.0052	16.2	0.2	1.2	1	0	0	1	1	1	1	IRSp53/MIM	homology	domain
DUF4665	PF15679.5	gi|384434612|ref|YP_005643970.1|	-	0.005	17.4	2.2	0.0075	16.9	2.2	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4665)
Sec34	PF04136.15	gi|384434612|ref|YP_005643970.1|	-	0.0055	16.6	5.3	0.0072	16.2	5.3	1.2	1	0	0	1	1	1	1	Sec34-like	family
HMMR_N	PF15905.5	gi|384434612|ref|YP_005643970.1|	-	0.0058	16.2	9.2	0.0064	16.0	9.2	1.0	1	0	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
Spc7	PF08317.11	gi|384434612|ref|YP_005643970.1|	-	0.0058	15.6	6.5	0.0065	15.4	6.5	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.12	gi|384434612|ref|YP_005643970.1|	-	0.0063	16.6	0.5	0.0094	16.0	0.5	1.3	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DegS	PF05384.11	gi|384434612|ref|YP_005643970.1|	-	0.0064	16.0	4.4	0.0089	15.5	4.4	1.3	1	0	0	1	1	1	1	Sensor	protein	DegS
Syntaxin-6_N	PF09177.11	gi|384434612|ref|YP_005643970.1|	-	0.01	16.4	4.8	0.028	14.9	4.5	1.8	1	1	0	1	1	1	1	Syntaxin	6,	N-terminal
Seryl_tRNA_N	PF02403.22	gi|384434612|ref|YP_005643970.1|	-	0.01	16.0	4.5	0.02	15.1	4.5	1.5	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF773	PF05600.12	gi|384434612|ref|YP_005643970.1|	-	0.011	14.6	3.8	0.012	14.4	3.8	1.0	1	0	0	1	1	1	0	CDK5	regulatory	subunit-associated	protein	3
Prefoldin_2	PF01920.20	gi|384434612|ref|YP_005643970.1|	-	0.013	15.4	9.6	0.023	14.7	9.6	1.5	1	0	0	1	1	1	0	Prefoldin	subunit
RmuC	PF02646.16	gi|384434612|ref|YP_005643970.1|	-	0.013	14.6	2.5	0.018	14.2	2.5	1.2	1	0	0	1	1	1	0	RmuC	family
Dzip-like_N	PF13815.6	gi|384434612|ref|YP_005643970.1|	-	0.014	15.4	3.8	0.018	15.0	3.8	1.1	1	0	0	1	1	1	0	Iguana/Dzip1-like	DAZ-interacting	protein	N-terminal
AAA_32	PF13654.6	gi|384434612|ref|YP_005643970.1|	-	0.015	14.1	7.3	0.043	12.6	7.3	1.6	1	1	0	1	1	1	0	AAA	domain
DUF16	PF01519.16	gi|384434612|ref|YP_005643970.1|	-	0.019	15.4	7.6	0.032	14.7	7.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
GP41	PF00517.17	gi|384434612|ref|YP_005643970.1|	-	0.02	14.8	0.6	0.021	14.8	0.6	1.1	1	0	0	1	1	1	0	Retroviral	envelope	protein
TMPIT	PF07851.13	gi|384434612|ref|YP_005643970.1|	-	0.023	13.9	3.2	0.023	13.9	3.2	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
DUF883	PF05957.13	gi|384434612|ref|YP_005643970.1|	-	0.024	15.2	0.0	0.042	14.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF3552	PF12072.8	gi|384434612|ref|YP_005643970.1|	-	0.025	14.0	7.2	0.033	13.6	7.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
DUF1664	PF07889.12	gi|384434612|ref|YP_005643970.1|	-	0.03	14.4	5.4	0.044	13.8	5.4	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Cob_adeno_trans	PF01923.18	gi|384434612|ref|YP_005643970.1|	-	0.03	14.4	3.3	0.038	14.1	2.4	1.6	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
ECM11	PF15463.6	gi|384434612|ref|YP_005643970.1|	-	0.032	14.8	2.5	0.032	14.8	2.5	1.3	1	1	0	1	1	1	0	Extracellular	mutant	protein	11
60KD_IMP	PF02096.20	gi|384434612|ref|YP_005643970.1|	-	0.033	14.1	0.5	0.044	13.7	0.5	1.2	1	0	0	1	1	1	0	60Kd	inner	membrane	protein
CR6_interact	PF10147.9	gi|384434612|ref|YP_005643970.1|	-	0.033	13.9	3.1	0.036	13.8	3.1	1.1	1	0	0	1	1	1	0	Growth	arrest	and	DNA-damage-inducible	proteins-interacting	protein	1
CpxA_peri	PF16527.5	gi|384434612|ref|YP_005643970.1|	-	0.04	14.3	0.7	0.047	14.1	0.7	1.1	1	0	0	1	1	1	0	Two-component	sensor	protein	CpxA,	periplasmic	domain
Phage_GPO	PF05929.11	gi|384434612|ref|YP_005643970.1|	-	0.049	13.2	1.4	0.054	13.1	1.4	1.1	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
THOC7	PF05615.13	gi|384434612|ref|YP_005643970.1|	-	0.05	13.9	6.3	0.051	13.9	5.8	1.3	1	1	0	1	1	1	0	Tho	complex	subunit	7
DUF2031	PF09592.10	gi|384434612|ref|YP_005643970.1|	-	0.061	12.8	8.0	0.07	12.6	8.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2031)
DHR10	PF18595.1	gi|384434612|ref|YP_005643970.1|	-	0.061	13.4	12.9	0.095	12.8	12.5	1.6	1	1	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
CorA	PF01544.18	gi|384434612|ref|YP_005643970.1|	-	0.063	12.6	1.7	0.086	12.1	1.7	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Med4	PF10018.9	gi|384434612|ref|YP_005643970.1|	-	0.074	12.7	7.9	0.37	10.4	0.9	1.9	1	1	1	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
GLE1	PF07817.13	gi|384434612|ref|YP_005643970.1|	-	0.096	11.9	0.7	0.13	11.5	0.7	1.2	1	0	0	1	1	1	0	GLE1-like	protein
DUF4407	PF14362.6	gi|384434612|ref|YP_005643970.1|	-	0.097	12.0	0.4	0.093	12.1	0.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FlxA	PF14282.6	gi|384434612|ref|YP_005643970.1|	-	0.12	12.4	5.1	2.4	8.2	3.7	2.1	2	0	0	2	2	2	0	FlxA-like	protein
LMBR1	PF04791.16	gi|384434612|ref|YP_005643970.1|	-	0.15	10.9	1.0	0.14	11.0	1.0	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
DUF4208	PF13907.6	gi|384434612|ref|YP_005643970.1|	-	0.16	12.4	6.2	0.28	11.6	6.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4208)
YtxH	PF12732.7	gi|384434612|ref|YP_005643970.1|	-	0.19	12.3	3.6	0.28	11.8	3.6	1.3	1	0	0	1	1	1	0	YtxH-like	protein
NPV_P10	PF05531.12	gi|384434612|ref|YP_005643970.1|	-	0.24	11.9	4.3	0.83	10.2	4.3	1.9	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DUF2779	PF11074.8	gi|384434612|ref|YP_005643970.1|	-	0.25	11.8	4.5	0.48	10.9	2.4	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function(DUF2779)
Geminin	PF07412.12	gi|384434612|ref|YP_005643970.1|	-	0.33	10.7	8.8	0.43	10.3	8.8	1.2	1	0	0	1	1	1	0	Geminin
BLOC1_2	PF10046.9	gi|384434612|ref|YP_005643970.1|	-	0.33	11.3	8.5	0.44	10.9	6.1	2.2	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
RecG_N	PF17190.4	gi|384434612|ref|YP_005643970.1|	-	0.38	11.5	10.2	0.5	11.1	7.4	2.0	2	0	0	2	2	2	0	RecG	N-terminal	helical	domain
Nairo_nucleo	PF02477.15	gi|384434612|ref|YP_005643970.1|	-	0.52	9.1	3.8	0.57	8.9	3.5	1.3	1	1	0	1	1	1	0	Nucleocapsid	N	protein
FapA	PF03961.13	gi|384434612|ref|YP_005643970.1|	-	0.54	8.8	8.3	0.6	8.6	1.4	1.7	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
CCDC-167	PF15188.6	gi|384434612|ref|YP_005643970.1|	-	0.56	10.6	10.5	0.085	13.2	2.9	2.2	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
DUF4446	PF14584.6	gi|384434612|ref|YP_005643970.1|	-	0.8	9.7	5.0	1.1	9.3	4.3	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Med21	PF11221.8	gi|384434612|ref|YP_005643970.1|	-	0.94	9.7	10.8	2.1	8.6	9.6	2.0	1	1	1	2	2	2	0	Subunit	21	of	Mediator	complex
YojJ	PF10372.9	gi|384434612|ref|YP_005643970.1|	-	0.98	9.6	7.8	2.3	8.4	7.7	1.7	1	1	0	1	1	1	0	Bacterial	membrane-spanning	protein	N-terminus
XhlA	PF10779.9	gi|384434612|ref|YP_005643970.1|	-	2.5	8.4	15.4	0.38	11.0	9.1	2.4	2	1	1	3	3	2	0	Haemolysin	XhlA
DUF3211	PF11485.8	gi|384434614|ref|YP_005643972.1|	-	1.2e-25	90.3	0.5	1.3e-25	90.2	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
FAD_binding_4	PF01565.23	gi|384434615|ref|YP_005643973.1|	-	8.8e-45	151.9	0.0	2.4e-44	150.4	0.0	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|384434615|ref|YP_005643973.1|	-	2.3e-42	145.4	0.1	3e-42	145.0	0.1	1.1	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
Prismane	PF03063.20	gi|384434615|ref|YP_005643973.1|	-	0.095	11.4	0.0	10	4.6	0.0	2.6	3	0	0	3	3	3	0	Prismane/CO	dehydrogenase	family
Phlebovirus_G2	PF07245.11	gi|384434616|ref|YP_005643974.1|	-	0.11	11.0	0.1	0.11	11.0	0.1	1.0	1	0	0	1	1	1	0	Phlebovirus	glycoprotein	G2
TusA	PF01206.17	gi|384434617|ref|YP_005643975.1|	-	3.3e-13	49.2	0.0	3.7e-13	49.1	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
VWA_CoxE	PF05762.14	gi|384434618|ref|YP_005643976.1|	-	3.2e-33	115.0	0.0	4.4e-33	114.6	0.0	1.1	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA_2	PF13519.6	gi|384434618|ref|YP_005643976.1|	-	0.0013	19.3	0.0	0.0029	18.2	0.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.28	gi|384434618|ref|YP_005643976.1|	-	0.0021	18.3	0.1	0.013	15.8	0.0	2.2	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
DUF1132	PF06575.12	gi|384434618|ref|YP_005643976.1|	-	0.93	9.9	5.1	13	6.3	0.3	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1132)
AAA_5	PF07728.14	gi|384434619|ref|YP_005643977.1|	-	3.8e-13	49.6	0.0	1.4e-11	44.5	0.0	2.3	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|384434619|ref|YP_005643977.1|	-	4.6e-11	43.3	2.4	1.6e-10	41.5	0.1	2.6	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_3	PF07726.11	gi|384434619|ref|YP_005643977.1|	-	1.3e-09	38.0	0.0	0.0015	18.4	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|384434619|ref|YP_005643977.1|	-	1.1e-07	32.0	1.0	1.7e-07	31.4	1.0	1.2	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_2	PF07724.14	gi|384434619|ref|YP_005643977.1|	-	2.3e-06	27.8	0.0	3.7e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|384434619|ref|YP_005643977.1|	-	4.8e-06	26.4	0.2	0.0043	16.8	0.0	2.5	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|384434619|ref|YP_005643977.1|	-	1.4e-05	25.4	0.1	7.2e-05	23.1	0.1	2.2	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|384434619|ref|YP_005643977.1|	-	2.9e-05	24.5	0.3	0.00054	20.4	0.2	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|384434619|ref|YP_005643977.1|	-	0.0003	20.8	0.4	0.0041	17.2	0.2	2.6	1	1	1	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|384434619|ref|YP_005643977.1|	-	0.00035	21.1	0.1	0.0024	18.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|384434619|ref|YP_005643977.1|	-	0.00051	20.0	0.9	0.00099	19.1	0.1	1.9	2	1	0	2	2	2	1	Rad17	P-loop	domain
AAA_6	PF12774.7	gi|384434619|ref|YP_005643977.1|	-	0.0008	18.5	0.0	0.0015	17.6	0.0	1.3	1	0	0	1	1	1	1	Hydrolytic	ATP	binding	site	of	dynein	motor	region
KAP_NTPase	PF07693.14	gi|384434619|ref|YP_005643977.1|	-	0.0025	17.1	0.5	0.017	14.4	0.7	1.9	1	1	1	2	2	2	1	KAP	family	P-loop	domain
NACHT	PF05729.12	gi|384434619|ref|YP_005643977.1|	-	0.0027	17.7	0.4	0.12	12.3	0.0	2.6	2	1	1	3	3	3	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|384434619|ref|YP_005643977.1|	-	0.0033	17.1	0.0	2.4	7.9	0.0	2.3	2	0	0	2	2	2	2	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|384434619|ref|YP_005643977.1|	-	0.0037	16.7	0.1	0.0082	15.5	0.1	1.8	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
RanGAP1_C	PF07834.11	gi|384434619|ref|YP_005643977.1|	-	0.006	16.2	1.6	0.0062	16.2	0.2	1.7	2	0	0	2	2	2	1	RanGAP1	C-terminal	domain
AAA_19	PF13245.6	gi|384434619|ref|YP_005643977.1|	-	0.0064	16.8	0.2	0.19	12.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|384434619|ref|YP_005643977.1|	-	0.0084	16.6	0.0	0.047	14.2	0.0	2.2	1	1	0	1	1	1	1	ABC	transporter
AAA_24	PF13479.6	gi|384434619|ref|YP_005643977.1|	-	0.012	15.4	0.0	0.09	12.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|384434619|ref|YP_005643977.1|	-	0.02	14.1	0.0	0.084	12.0	0.0	1.9	2	0	0	2	2	2	0	NB-ARC	domain
AAA_11	PF13086.6	gi|384434619|ref|YP_005643977.1|	-	0.024	14.4	0.0	0.048	13.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|384434619|ref|YP_005643977.1|	-	0.033	14.6	0.0	0.11	13.0	0.0	2.1	1	1	0	1	1	1	0	RNA	helicase
AAA_33	PF13671.6	gi|384434619|ref|YP_005643977.1|	-	0.059	13.5	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|384434619|ref|YP_005643977.1|	-	0.11	12.6	0.0	0.22	11.6	0.0	1.6	1	1	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Zeta_toxin	PF06414.12	gi|384434619|ref|YP_005643977.1|	-	0.14	11.5	0.4	0.38	10.0	0.0	1.9	2	0	0	2	2	2	0	Zeta	toxin
Ald_Xan_dh_C2	PF02738.18	gi|384434620|ref|YP_005643978.1|	-	1.8e-179	597.8	0.0	2.1e-179	597.5	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384434620|ref|YP_005643978.1|	-	5.4e-34	116.9	0.1	1.1e-33	115.9	0.1	1.5	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Fer2_2	PF01799.20	gi|384434621|ref|YP_005643979.1|	-	2.9e-33	113.7	0.8	1e-32	112.0	0.0	1.9	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|384434621|ref|YP_005643979.1|	-	4.4e-06	26.5	0.9	1.3e-05	25.1	0.3	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|384434621|ref|YP_005643979.1|	-	0.00019	21.4	1.2	0.00034	20.6	1.1	1.6	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
FAD_binding_5	PF00941.21	gi|384434622|ref|YP_005643980.1|	-	3.7e-50	170.0	0.0	5.3e-50	169.5	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.17	gi|384434622|ref|YP_005643980.1|	-	3.5e-21	75.3	0.0	1.2e-20	73.6	0.0	1.9	2	0	0	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
XdhC_C	PF13478.6	gi|384434623|ref|YP_005643981.1|	-	1.1e-21	77.7	0.0	1.5e-21	77.2	0.0	1.2	1	0	0	1	1	1	1	XdhC	Rossmann	domain
YHS	PF04945.13	gi|384434623|ref|YP_005643981.1|	-	9.4e-12	44.8	2.9	9.4e-12	44.8	2.9	2.2	2	0	0	2	2	2	1	YHS	domain
XdhC_CoxI	PF02625.16	gi|384434623|ref|YP_005643981.1|	-	7.8e-11	42.0	0.0	1.4e-10	41.2	0.0	1.3	1	0	0	1	1	1	1	XdhC	and	CoxI	family
Arc_trans_TRASH	PF08394.10	gi|384434623|ref|YP_005643981.1|	-	0.0067	16.7	2.2	0.021	15.1	2.2	1.9	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.14	gi|384434623|ref|YP_005643981.1|	-	0.13	12.2	4.9	0.37	10.8	4.9	1.8	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
EamA	PF00892.20	gi|384434624|ref|YP_005643982.1|	-	1.5e-25	89.9	39.7	3.3e-18	66.2	12.5	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
Pyr_redox_2	PF07992.14	gi|384434625|ref|YP_005643983.1|	-	4.7e-62	209.9	0.0	5.7e-62	209.6	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384434625|ref|YP_005643983.1|	-	8.4e-20	71.1	0.3	1.3e-17	64.1	0.2	3.0	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Reductase_C	PF14759.6	gi|384434625|ref|YP_005643983.1|	-	7.2e-14	52.1	0.0	1.5e-13	51.1	0.0	1.6	1	0	0	1	1	1	1	Reductase	C-terminal
Pyr_redox_3	PF13738.6	gi|384434625|ref|YP_005643983.1|	-	1.1e-13	51.2	0.0	1.7e-13	50.5	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|384434625|ref|YP_005643983.1|	-	0.00028	20.2	0.0	0.63	9.3	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.18	gi|384434625|ref|YP_005643983.1|	-	0.0026	18.0	0.2	0.4	11.0	0.1	2.5	2	0	0	2	2	2	1	TrkA-N	domain
Shikimate_DH	PF01488.20	gi|384434625|ref|YP_005643983.1|	-	0.0027	17.8	0.1	0.18	11.9	0.0	2.6	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
DAO	PF01266.24	gi|384434625|ref|YP_005643983.1|	-	0.0045	16.6	0.8	1.8	8.1	0.6	2.9	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
ThiF	PF00899.21	gi|384434625|ref|YP_005643983.1|	-	0.0053	16.1	0.0	0.045	13.1	0.0	2.0	2	0	0	2	2	2	1	ThiF	family
3HCDH_N	PF02737.18	gi|384434625|ref|YP_005643983.1|	-	0.009	15.9	0.1	0.015	15.2	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|384434625|ref|YP_005643983.1|	-	0.011	15.0	0.0	0.06	12.6	0.0	1.9	2	0	0	2	2	2	0	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|384434625|ref|YP_005643983.1|	-	0.011	15.7	0.2	12	5.9	0.0	3.7	3	1	1	4	4	4	0	FAD-NAD(P)-binding
NAD_binding_7	PF13241.6	gi|384434625|ref|YP_005643983.1|	-	0.011	16.1	0.0	0.48	10.9	0.1	2.3	2	0	0	2	2	2	0	Putative	NAD(P)-binding
GIDA	PF01134.22	gi|384434625|ref|YP_005643983.1|	-	0.02	14.0	1.1	5.7	5.9	0.4	3.5	3	1	1	4	4	4	0	Glucose	inhibited	division	protein	A
2-Hacid_dh_C	PF02826.19	gi|384434625|ref|YP_005643983.1|	-	0.023	14.1	0.0	0.051	12.9	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|384434625|ref|YP_005643983.1|	-	0.025	14.6	0.0	0.05	13.7	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|384434625|ref|YP_005643983.1|	-	0.063	13.5	0.1	3	8.1	0.0	2.5	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|384434625|ref|YP_005643983.1|	-	0.064	12.3	0.1	32	3.4	0.0	3.8	4	1	1	5	5	5	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|384434625|ref|YP_005643983.1|	-	0.09	12.3	0.3	0.15	11.6	0.3	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
HI0933_like	PF03486.14	gi|384434625|ref|YP_005643983.1|	-	0.19	10.4	0.5	9.4	4.8	0.1	2.8	2	1	1	3	3	3	0	HI0933-like	protein
YHS	PF04945.13	gi|384434626|ref|YP_005643984.1|	-	3.4e-19	68.7	0.8	5.1e-19	68.1	0.8	1.3	1	0	0	1	1	1	1	YHS	domain
Rdx	PF10262.9	gi|384434626|ref|YP_005643984.1|	-	1.9e-18	66.4	0.0	2.8e-18	65.9	0.0	1.3	1	0	0	1	1	1	1	Rdx	family
Arc_trans_TRASH	PF08394.10	gi|384434626|ref|YP_005643984.1|	-	0.0032	17.7	1.8	0.0032	17.7	1.8	1.7	2	0	0	2	2	2	1	Archaeal	TRASH	domain
zf-FCS	PF06467.14	gi|384434626|ref|YP_005643984.1|	-	0.004	17.1	0.6	0.0077	16.2	0.6	1.5	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
FAP206	PF12018.8	gi|384434626|ref|YP_005643984.1|	-	0.087	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function
DpnI_C	PF17726.1	gi|384434626|ref|YP_005643984.1|	-	0.088	12.9	0.2	0.18	11.9	0.0	1.6	2	0	0	2	2	2	0	Dam-replacing	HTH	domain
Ribosom_S30AE_C	PF16321.5	gi|384434627|ref|YP_005643985.1|	-	0.023	14.4	0.2	0.15	11.8	0.0	2.0	2	0	0	2	2	2	0	Sigma	54	modulation/S30EA	ribosomal	protein	C	terminus
DUF2551	PF10826.8	gi|384434627|ref|YP_005643985.1|	-	0.047	13.9	1.0	3.8	7.8	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2551)
LBP_M	PF17385.2	gi|384434627|ref|YP_005643985.1|	-	0.092	12.2	0.1	0.11	12.0	0.1	1.0	1	0	0	1	1	1	0	Lacto-N-biose	phosphorylase	central	domain
Mnd1	PF03962.15	gi|384434627|ref|YP_005643985.1|	-	0.2	11.9	2.9	0.24	11.7	0.2	2.0	2	0	0	2	2	2	0	Mnd1	HTH	domain
Pirin	PF02678.16	gi|384434628|ref|YP_005643986.1|	-	4.2e-37	126.4	0.0	6.6e-36	122.6	0.0	2.2	2	0	0	2	2	2	1	Pirin
Pirin_C	PF05726.13	gi|384434628|ref|YP_005643986.1|	-	5.7e-26	90.9	0.0	1.9e-25	89.2	0.0	1.8	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
DUF772	PF05598.11	gi|384434630|ref|YP_005643988.1|	-	0.00066	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434630|ref|YP_005643988.1|	-	0.041	13.5	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
YHS	PF04945.13	gi|384434631|ref|YP_005643989.1|	-	6.8e-16	58.1	0.0	1.3e-15	57.2	0.0	1.5	1	0	0	1	1	1	1	YHS	domain
FAP206	PF12018.8	gi|384434631|ref|YP_005643989.1|	-	0.082	12.4	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function
TmoB	PF06234.12	gi|384434632|ref|YP_005643990.1|	-	0.15	12.2	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
Rieske	PF00355.26	gi|384434633|ref|YP_005643991.1|	-	5.4e-11	42.3	0.0	7.3e-11	41.9	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|384434633|ref|YP_005643991.1|	-	0.00034	20.5	0.0	0.00059	19.7	0.0	1.4	1	1	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
MmoB_DmpM	PF02406.17	gi|384434634|ref|YP_005643992.1|	-	4e-22	78.2	0.1	5e-22	77.9	0.1	1.1	1	0	0	1	1	1	1	MmoB/DmpM	family
Phenol_Hydrox	PF02332.18	gi|384434635|ref|YP_005643993.1|	-	1.8e-59	201.1	0.7	2.6e-59	200.6	0.7	1.2	1	0	0	1	1	1	1	Methane/Phenol/Toluene	Hydroxylase
DUF2992	PF11208.8	gi|384434635|ref|YP_005643993.1|	-	0.052	13.8	0.0	0.22	11.8	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2992)
FeS_assembly_P	PF01883.19	gi|384434636|ref|YP_005643994.1|	-	7e-13	48.6	0.0	1.3e-12	47.7	0.0	1.5	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
DDE_3	PF13358.6	gi|384434637|ref|YP_005643995.1|	-	1.2e-22	80.2	0.0	2.2e-22	79.4	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384434637|ref|YP_005643995.1|	-	1.7e-12	46.8	0.5	4.5e-12	45.4	0.5	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|384434637|ref|YP_005643995.1|	-	1.5e-11	44.8	0.2	3.4e-11	43.6	0.2	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|384434637|ref|YP_005643995.1|	-	2.1e-09	36.9	0.0	4.3e-09	35.9	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|384434637|ref|YP_005643995.1|	-	3.6e-09	36.5	0.0	6.3e-09	35.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|384434637|ref|YP_005643995.1|	-	7.7e-08	32.3	0.1	2e-07	31.0	0.0	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
rve	PF00665.26	gi|384434637|ref|YP_005643995.1|	-	1.2e-07	31.9	0.0	4.5e-07	30.1	0.0	1.9	1	1	0	2	2	2	1	Integrase	core	domain
LZ_Tnp_IS481	PF13011.6	gi|384434637|ref|YP_005643995.1|	-	6.1e-06	26.7	0.0	1.1e-05	25.8	0.0	1.4	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.12	gi|384434637|ref|YP_005643995.1|	-	0.00017	21.4	0.2	0.0055	16.6	0.0	2.5	2	0	0	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
DDE_Tnp_ISAZ013	PF07592.11	gi|384434637|ref|YP_005643995.1|	-	0.00025	20.1	2.0	0.0039	16.2	0.4	2.2	2	0	0	2	2	2	1	Rhodopirellula	transposase	DDE	domain
Sigma70_r4_2	PF08281.12	gi|384434637|ref|YP_005643995.1|	-	0.016	14.9	0.0	0.031	13.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
Tma16	PF11176.8	gi|384434637|ref|YP_005643995.1|	-	0.055	13.4	3.1	0.056	13.3	0.6	2.1	2	0	0	2	2	2	0	Translation	machinery-associated	protein	16
HTH_Tnp_1	PF01527.20	gi|384434637|ref|YP_005643995.1|	-	0.093	13.1	0.1	2.4	8.5	0.1	2.5	2	0	0	2	2	2	0	Transposase
DUF1829	PF08862.10	gi|384434637|ref|YP_005643995.1|	-	0.13	12.8	1.8	0.53	10.8	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF1829
TFIIF_beta	PF02270.15	gi|384434637|ref|YP_005643995.1|	-	1.2	9.4	4.5	1.3	9.2	0.2	3.0	3	0	0	3	3	3	0	TFIIF,	beta	subunit	HTH	domain
CcdA	PF07362.12	gi|384434638|ref|YP_005643996.1|	-	1e-05	25.8	1.7	1.2e-05	25.6	1.8	1.3	1	1	0	1	1	1	1	Post-segregation	antitoxin	CcdA
DUF816	PF05674.12	gi|384434638|ref|YP_005643996.1|	-	0.001	19.0	0.8	0.0012	18.8	0.8	1.0	1	0	0	1	1	1	1	Baculovirus	protein	of	unknown	function	(DUF816)
PSK_trans_fac	PF07704.11	gi|384434638|ref|YP_005643996.1|	-	0.0028	18.4	2.7	0.003	18.3	2.7	1.1	1	0	0	1	1	1	1	Rv0623-like	transcription	factor
Ran-binding	PF05508.11	gi|384434638|ref|YP_005643996.1|	-	0.0077	15.2	2.8	0.0091	15.0	2.8	1.0	1	0	0	1	1	1	1	RanGTP-binding	protein
YqaH	PF17448.2	gi|384434638|ref|YP_005643996.1|	-	0.011	16.1	0.7	0.012	15.9	0.7	1.1	1	0	0	1	1	1	0	Uncharacterized	YqaH-like
YtxH	PF12732.7	gi|384434638|ref|YP_005643996.1|	-	0.072	13.6	6.5	0.094	13.3	6.5	1.1	1	0	0	1	1	1	0	YtxH-like	protein
PI3K_rbd	PF00794.18	gi|384434638|ref|YP_005643996.1|	-	0.086	13.0	0.1	0.091	12.9	0.1	1.2	1	0	0	1	1	1	0	PI3-kinase	family,	ras-binding	domain
DUF3347	PF11827.8	gi|384434638|ref|YP_005643996.1|	-	0.16	12.2	2.2	0.18	12.0	2.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3347)
MICSWaP	PF17018.5	gi|384434638|ref|YP_005643996.1|	-	0.19	11.3	1.3	0.23	11.0	1.3	1.1	1	0	0	1	1	1	0	Spore	wall	protein
Histone_HNS	PF00816.21	gi|384434638|ref|YP_005643996.1|	-	0.6	11.0	4.9	2.1	9.2	2.3	2.0	1	1	1	2	2	2	0	H-NS	histone	family
PIN	PF01850.21	gi|384434639|ref|YP_005643997.1|	-	1.7e-06	28.6	0.2	2.7e-06	27.9	0.2	1.3	1	1	0	1	1	1	1	PIN	domain
MurJ	PF03023.14	gi|384434639|ref|YP_005643997.1|	-	0.14	10.8	0.0	0.15	10.6	0.0	1.0	1	0	0	1	1	1	0	Lipid	II	flippase	MurJ
DDE_Tnp_1	PF01609.21	gi|384434640|ref|YP_005643998.1|	-	2.6e-15	56.7	0.0	4.5e-15	55.9	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
NTP_transf_2	PF01909.23	gi|384434641|ref|YP_005643999.1|	-	3.9e-15	55.9	0.2	5.6e-15	55.4	0.2	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384434641|ref|YP_005643999.1|	-	2.2e-10	40.4	0.6	2.7e-10	40.2	0.1	1.4	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|384434641|ref|YP_005643999.1|	-	0.00016	21.8	0.0	0.00019	21.6	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HEPN	PF05168.14	gi|384434642|ref|YP_005644000.1|	-	1e-26	93.3	0.0	1.2e-26	93.2	0.0	1.0	1	0	0	1	1	1	1	HEPN	domain
4HBT	PF03061.22	gi|384434643|ref|YP_005644001.1|	-	4.9e-19	68.5	0.0	6.3e-19	68.1	0.0	1.1	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.6	gi|384434643|ref|YP_005644001.1|	-	4.9e-06	27.0	0.0	5.9e-06	26.7	0.0	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
DUF4442	PF14539.6	gi|384434643|ref|YP_005644001.1|	-	0.0059	16.7	0.0	0.0077	16.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
HpcH_HpaI	PF03328.14	gi|384434644|ref|YP_005644002.1|	-	2e-35	121.9	0.1	5.7e-34	117.2	0.1	2.2	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|384434644|ref|YP_005644002.1|	-	2.8e-18	66.2	0.3	2e-08	33.8	0.0	2.2	1	1	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
BH4	PF02180.17	gi|384434644|ref|YP_005644002.1|	-	0.11	12.3	0.2	0.24	11.3	0.2	1.5	1	0	0	1	1	1	0	Bcl-2	homology	region	4
PhoU	PF01895.19	gi|384434644|ref|YP_005644002.1|	-	0.29	11.6	2.4	1.1	9.7	0.1	2.8	3	0	0	3	3	3	0	PhoU	domain
FCD	PF07729.12	gi|384434645|ref|YP_005644003.1|	-	2.1e-23	83.1	1.6	3e-23	82.6	1.6	1.2	1	0	0	1	1	1	1	FCD	domain
GntR	PF00392.21	gi|384434645|ref|YP_005644003.1|	-	2.3e-16	59.2	0.1	4.8e-16	58.2	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|384434645|ref|YP_005644003.1|	-	5e-05	22.8	0.6	0.00019	20.9	0.6	2.2	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|384434645|ref|YP_005644003.1|	-	0.00013	21.9	0.0	0.00037	20.4	0.0	1.8	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
FadR_C	PF07840.12	gi|384434645|ref|YP_005644003.1|	-	0.00036	20.5	0.4	0.00073	19.5	0.3	1.5	2	0	0	2	2	2	1	FadR	C-terminal	domain
Prefoldin	PF02996.17	gi|384434645|ref|YP_005644003.1|	-	0.0008	19.3	0.1	0.0016	18.3	0.1	1.5	1	0	0	1	1	1	1	Prefoldin	subunit
Phage_rep_O	PF04492.13	gi|384434645|ref|YP_005644003.1|	-	0.0012	19.4	0.1	0.014	15.9	0.0	2.3	2	0	0	2	2	2	1	Bacteriophage	replication	protein	O
HTH_11	PF08279.12	gi|384434645|ref|YP_005644003.1|	-	0.0017	18.3	0.6	0.0047	16.8	0.1	2.1	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|384434645|ref|YP_005644003.1|	-	0.0047	17.4	0.1	0.017	15.6	0.0	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|384434645|ref|YP_005644003.1|	-	0.0058	16.5	3.3	0.0091	15.8	0.0	2.8	3	1	0	3	3	3	1	TFIIE	alpha	subunit
TrmB	PF01978.19	gi|384434645|ref|YP_005644003.1|	-	0.013	15.4	0.0	0.03	14.2	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|384434645|ref|YP_005644003.1|	-	0.023	14.4	0.0	0.067	12.9	0.0	1.8	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
FaeA	PF04703.12	gi|384434645|ref|YP_005644003.1|	-	0.034	14.5	1.0	0.19	12.1	0.1	2.5	3	0	0	3	3	3	0	FaeA-like	protein
MarR	PF01047.22	gi|384434645|ref|YP_005644003.1|	-	0.042	13.8	0.0	0.089	12.7	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Succ_DH_flav_C	PF02910.20	gi|384434645|ref|YP_005644003.1|	-	0.071	13.1	0.0	0.22	11.5	0.0	1.8	1	1	0	1	1	1	0	Fumarate	reductase	flavoprotein	C-term
Rrf2	PF02082.20	gi|384434645|ref|YP_005644003.1|	-	0.097	13.0	0.0	0.23	11.9	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
DUF4423	PF14394.6	gi|384434645|ref|YP_005644003.1|	-	0.11	12.2	0.1	0.11	12.2	0.1	2.9	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4423)
DUF3782	PF12644.7	gi|384434646|ref|YP_005644004.1|	-	1.6e-08	34.5	1.1	1.6e-08	34.5	1.1	4.6	1	1	2	4	4	3	1	Protein	of	unknown	function	(DUF3782)
DUF1664	PF07889.12	gi|384434646|ref|YP_005644004.1|	-	1.4e-07	31.5	19.6	3.3e-05	23.9	8.3	2.4	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
Vac_Fusion	PF02346.16	gi|384434646|ref|YP_005644004.1|	-	4.3e-07	29.5	14.2	0.024	14.3	1.0	3.7	1	1	1	3	3	3	3	Chordopoxvirus	multifunctional	envelope	protein	A27
PDDEXK_10	PF07788.11	gi|384434646|ref|YP_005644004.1|	-	2.3e-06	27.5	2.0	3.4e-06	26.9	0.7	2.0	2	0	0	2	2	1	1	PD-(D/E)XK	nuclease	superfamily
ERM	PF00769.19	gi|384434646|ref|YP_005644004.1|	-	1.3e-05	25.1	25.1	1.8e-05	24.7	25.1	1.2	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
DUF1465	PF07323.12	gi|384434646|ref|YP_005644004.1|	-	3.1e-05	23.9	16.9	0.052	13.4	3.0	3.2	1	1	2	3	3	3	3	Protein	of	unknown	function	(DUF1465)
Tropomyosin	PF00261.20	gi|384434646|ref|YP_005644004.1|	-	5.8e-05	22.6	25.2	0.00013	21.5	25.2	1.6	1	0	0	1	1	1	1	Tropomyosin
Fib_alpha	PF08702.10	gi|384434646|ref|YP_005644004.1|	-	8.8e-05	22.7	19.8	0.078	13.2	2.2	3.2	1	1	2	3	3	3	2	Fibrinogen	alpha/beta	chain	family
Phage_GPO	PF05929.11	gi|384434646|ref|YP_005644004.1|	-	0.0012	18.5	18.6	0.074	12.7	7.9	2.2	1	1	1	2	2	2	2	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
XhlA	PF10779.9	gi|384434646|ref|YP_005644004.1|	-	0.0015	18.7	26.7	0.013	15.7	7.5	3.8	2	1	1	3	3	3	2	Haemolysin	XhlA
PspA_IM30	PF04012.12	gi|384434646|ref|YP_005644004.1|	-	0.0017	18.0	23.9	0.0035	17.0	23.9	1.5	1	0	0	1	1	1	1	PspA/IM30	family
Sec34	PF04136.15	gi|384434646|ref|YP_005644004.1|	-	0.0017	18.2	15.4	0.021	14.7	1.2	3.0	1	1	1	2	2	2	1	Sec34-like	family
DUF3584	PF12128.8	gi|384434646|ref|YP_005644004.1|	-	0.0018	15.9	17.8	0.0022	15.6	17.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Exonuc_VII_L	PF02601.15	gi|384434646|ref|YP_005644004.1|	-	0.0024	17.5	11.1	0.0033	17.0	11.1	1.2	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
DUF4164	PF13747.6	gi|384434646|ref|YP_005644004.1|	-	0.0028	17.9	27.0	0.03	14.6	13.4	2.6	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4164)
DUF16	PF01519.16	gi|384434646|ref|YP_005644004.1|	-	0.0029	18.1	26.6	0.31	11.5	8.2	3.8	2	1	1	3	3	2	1	Protein	of	unknown	function	DUF16
CALCOCO1	PF07888.11	gi|384434646|ref|YP_005644004.1|	-	0.003	16.5	24.7	0.0042	16.0	24.7	1.1	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
DUF812	PF05667.11	gi|384434646|ref|YP_005644004.1|	-	0.0038	16.2	26.5	0.0051	15.8	26.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
TFR_dimer	PF04253.15	gi|384434646|ref|YP_005644004.1|	-	0.0039	17.3	11.6	2.7	8.1	4.7	3.7	1	1	1	2	2	2	0	Transferrin	receptor-like	dimerisation	domain
AAA_13	PF13166.6	gi|384434646|ref|YP_005644004.1|	-	0.0047	15.6	22.2	0.011	14.5	21.9	1.6	1	1	0	1	1	1	1	AAA	domain
TMPIT	PF07851.13	gi|384434646|ref|YP_005644004.1|	-	0.0054	16.0	17.9	0.18	11.0	0.5	2.1	1	1	1	2	2	2	2	TMPIT-like	protein
PTRF_SDPR	PF15237.6	gi|384434646|ref|YP_005644004.1|	-	0.0056	16.3	14.0	0.0056	16.3	14.0	2.5	1	1	1	2	2	2	1	PTRF/SDPR	family
DUF5082	PF16888.5	gi|384434646|ref|YP_005644004.1|	-	0.0066	16.7	21.4	0.043	14.1	1.7	2.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5082)
Serine_rich	PF08824.10	gi|384434646|ref|YP_005644004.1|	-	0.0079	16.2	11.8	0.28	11.2	5.5	2.7	1	1	1	2	2	2	1	Serine	rich	protein	interaction	domain
Jnk-SapK_ap_N	PF09744.9	gi|384434646|ref|YP_005644004.1|	-	0.015	15.6	23.3	0.015	15.6	23.3	1.9	2	0	0	2	2	1	0	JNK_SAPK-associated	protein-1
ATG16	PF08614.11	gi|384434646|ref|YP_005644004.1|	-	0.015	15.6	30.2	0.037	14.2	28.6	2.1	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
GCN5L1	PF06320.13	gi|384434646|ref|YP_005644004.1|	-	0.016	15.4	18.4	0.38	10.9	6.9	2.9	1	1	1	3	3	2	0	GCN5-like	protein	1	(GCN5L1)
Mod_r	PF07200.13	gi|384434646|ref|YP_005644004.1|	-	0.016	15.3	22.4	0.16	12.0	15.8	2.5	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
CheZ	PF04344.13	gi|384434646|ref|YP_005644004.1|	-	0.021	14.8	15.2	0.13	12.2	12.2	2.3	1	1	1	2	2	2	0	Chemotaxis	phosphatase,	CheZ
SlyX	PF04102.12	gi|384434646|ref|YP_005644004.1|	-	0.023	15.3	27.4	0.063	13.9	7.6	4.3	1	1	3	4	4	4	0	SlyX
Piwi	PF02171.17	gi|384434646|ref|YP_005644004.1|	-	0.036	13.3	3.1	1.4	8.0	0.4	3.1	1	1	1	2	2	2	0	Piwi	domain
BLOC1_2	PF10046.9	gi|384434646|ref|YP_005644004.1|	-	0.043	14.1	24.1	0.39	11.0	1.6	4.1	2	1	2	4	4	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TMP_2	PF06791.13	gi|384434646|ref|YP_005644004.1|	-	0.044	13.5	5.6	0.47	10.1	0.8	2.4	1	1	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
EzrA	PF06160.12	gi|384434646|ref|YP_005644004.1|	-	0.049	11.8	28.5	0.14	10.3	17.0	3.2	2	1	2	4	4	3	0	Septation	ring	formation	regulator,	EzrA
ZapB	PF06005.12	gi|384434646|ref|YP_005644004.1|	-	0.049	14.1	33.3	2.7	8.5	13.0	3.6	1	1	2	3	3	3	0	Cell	division	protein	ZapB
Perilipin	PF03036.16	gi|384434646|ref|YP_005644004.1|	-	0.051	12.6	16.8	0.59	9.1	16.7	2.1	1	1	1	2	2	2	0	Perilipin	family
Acetyltransf_11	PF13720.6	gi|384434646|ref|YP_005644004.1|	-	0.055	13.9	13.7	3.8e+02	1.6	0.2	3.4	1	1	1	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
CLZ	PF16526.5	gi|384434646|ref|YP_005644004.1|	-	0.057	13.8	26.9	0.36	11.2	8.8	4.7	1	1	3	4	4	4	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
ADIP	PF11559.8	gi|384434646|ref|YP_005644004.1|	-	0.061	13.4	31.0	0.31	11.1	12.6	2.6	2	1	1	3	3	2	0	Afadin-	and	alpha	-actinin-Binding
LMBR1	PF04791.16	gi|384434646|ref|YP_005644004.1|	-	0.068	12.1	10.7	0.091	11.7	10.7	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
HOOK	PF05622.12	gi|384434646|ref|YP_005644004.1|	-	0.079	11.1	27.6	0.13	10.4	26.7	1.5	1	1	0	1	1	1	0	HOOK	protein
RmuC	PF02646.16	gi|384434646|ref|YP_005644004.1|	-	0.08	12.1	22.0	0.052	12.7	3.3	3.1	1	1	2	3	3	3	0	RmuC	family
Snapin_Pallidin	PF14712.6	gi|384434646|ref|YP_005644004.1|	-	0.085	13.3	25.4	1.9	8.9	12.9	3.5	1	1	2	3	3	3	0	Snapin/Pallidin
Cep57_CLD	PF14073.6	gi|384434646|ref|YP_005644004.1|	-	0.087	12.8	28.0	0.32	11.0	24.2	2.8	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	Cep57
DUF3450	PF11932.8	gi|384434646|ref|YP_005644004.1|	-	0.12	11.7	24.9	0.56	9.5	24.9	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
HBM	PF16591.5	gi|384434646|ref|YP_005644004.1|	-	0.14	11.6	17.7	0.4	10.1	4.1	2.4	1	1	1	2	2	2	0	Helical	bimodular	sensor	domain
CK2S	PF15011.6	gi|384434646|ref|YP_005644004.1|	-	0.15	12.0	17.1	0.46	10.4	4.7	2.3	1	1	1	2	2	2	0	Casein	Kinase	2	substrate
TMF_DNA_bd	PF12329.8	gi|384434646|ref|YP_005644004.1|	-	0.18	11.8	38.8	0.18	11.8	12.7	4.2	2	1	4	6	6	5	0	TATA	element	modulatory	factor	1	DNA	binding
V_ATPase_I	PF01496.19	gi|384434646|ref|YP_005644004.1|	-	0.18	9.7	11.3	0.24	9.3	11.3	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF4795	PF16043.5	gi|384434646|ref|YP_005644004.1|	-	0.22	11.1	26.3	0.46	10.1	26.2	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
DUF2730	PF10805.8	gi|384434646|ref|YP_005644004.1|	-	0.25	11.4	17.2	2.1	8.5	4.5	3.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
BRE1	PF08647.11	gi|384434646|ref|YP_005644004.1|	-	0.27	11.3	27.7	4.1	7.5	18.7	2.8	1	1	1	2	2	2	0	BRE1	E3	ubiquitin	ligase
HAUS-augmin3	PF14932.6	gi|384434646|ref|YP_005644004.1|	-	0.27	10.8	22.6	0.55	9.8	19.5	2.0	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
Vps53_N	PF04100.12	gi|384434646|ref|YP_005644004.1|	-	0.3	10.0	19.5	0.45	9.4	13.0	2.2	1	1	1	2	2	2	0	Vps53-like,	N-terminal
Spc7	PF08317.11	gi|384434646|ref|YP_005644004.1|	-	0.3	9.9	28.3	0.62	8.9	28.0	1.6	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Herpes_UL17	PF04559.12	gi|384434646|ref|YP_005644004.1|	-	0.31	9.8	4.7	0.44	9.3	4.7	1.2	1	0	0	1	1	1	0	Herpesvirus	UL17	protein
RdRP_3	PF00998.23	gi|384434646|ref|YP_005644004.1|	-	0.33	9.6	7.3	0.65	8.6	7.3	1.4	1	1	0	1	1	1	0	Viral	RNA	dependent	RNA	polymerase
FUSC	PF04632.12	gi|384434646|ref|YP_005644004.1|	-	0.37	9.3	5.1	0.5	8.8	5.1	1.3	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
PI3K_P85_iSH2	PF16454.5	gi|384434646|ref|YP_005644004.1|	-	0.41	10.2	24.3	0.2	11.2	3.0	3.5	2	1	2	4	4	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
DUF4407	PF14362.6	gi|384434646|ref|YP_005644004.1|	-	0.41	10.0	16.4	0.85	8.9	16.4	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Lebercilin	PF15619.6	gi|384434646|ref|YP_005644004.1|	-	0.44	10.2	29.6	1.3	8.7	29.7	1.6	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
NERD	PF08378.11	gi|384434646|ref|YP_005644004.1|	-	0.45	11.0	3.4	0.27	11.7	0.3	2.3	2	1	0	2	2	1	0	Nuclease-related	domain
DUF4962	PF16332.5	gi|384434646|ref|YP_005644004.1|	-	0.46	8.9	7.8	0.64	8.5	7.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4962)
Taxilin	PF09728.9	gi|384434646|ref|YP_005644004.1|	-	0.49	9.5	27.7	0.42	9.8	8.5	2.0	1	1	1	2	2	2	0	Myosin-like	coiled-coil	protein
ORF6C	PF10552.9	gi|384434646|ref|YP_005644004.1|	-	0.49	10.5	20.7	0.71	10.0	3.2	4.1	1	1	3	4	4	4	0	ORF6C	domain
Prefoldin_2	PF01920.20	gi|384434646|ref|YP_005644004.1|	-	0.5	10.4	33.2	1.9	8.5	7.8	4.0	1	1	3	4	4	4	0	Prefoldin	subunit
DUF4763	PF15960.5	gi|384434646|ref|YP_005644004.1|	-	0.51	9.6	19.0	0.63	9.3	14.4	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4763)
Rootletin	PF15035.6	gi|384434646|ref|YP_005644004.1|	-	0.51	10.3	22.3	3.7	7.5	22.4	2.3	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Cauli_AT	PF03233.13	gi|384434646|ref|YP_005644004.1|	-	0.52	10.2	17.5	0.36	10.7	8.2	2.9	1	1	1	2	2	2	0	Aphid	transmission	protein
NCD2	PF04905.13	gi|384434646|ref|YP_005644004.1|	-	0.53	10.3	11.4	2.5	8.1	4.8	2.5	1	1	1	2	2	2	0	NAB	conserved	region	2	(NCD2)
Spectrin	PF00435.21	gi|384434646|ref|YP_005644004.1|	-	0.62	10.6	22.3	2	9.0	14.4	3.0	1	1	3	4	4	4	0	Spectrin	repeat
Laminin_II	PF06009.12	gi|384434646|ref|YP_005644004.1|	-	0.69	9.9	21.8	1.2	9.2	2.3	2.5	1	1	1	2	2	2	0	Laminin	Domain	II
GAS	PF13851.6	gi|384434646|ref|YP_005644004.1|	-	0.7	9.2	30.3	0.058	12.8	24.7	2.0	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
Katanin_con80	PF13925.6	gi|384434646|ref|YP_005644004.1|	-	0.71	9.9	10.3	0.81	9.7	1.3	2.7	1	1	1	2	2	2	0	con80	domain	of	Katanin
Plk4_PB2	PF18409.1	gi|384434646|ref|YP_005644004.1|	-	0.73	10.5	10.1	6	7.6	6.2	3.1	1	1	2	3	3	3	0	Polo-like	Kinase	4	Polo	Box	2
SKA1	PF07160.12	gi|384434646|ref|YP_005644004.1|	-	0.78	9.5	18.0	2.5	7.9	6.7	2.3	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
DUF4143	PF13635.6	gi|384434646|ref|YP_005644004.1|	-	0.79	9.9	8.2	1.4	9.0	8.2	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4143)
SpecificRecomb	PF10136.9	gi|384434646|ref|YP_005644004.1|	-	0.8	7.9	9.0	1	7.5	9.0	1.2	1	0	0	1	1	1	0	Site-specific	recombinase
DUF2400	PF09674.10	gi|384434646|ref|YP_005644004.1|	-	0.84	9.6	6.5	4.7	7.2	2.7	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2400)
DASH_Dam1	PF08653.10	gi|384434646|ref|YP_005644004.1|	-	0.89	9.4	6.1	20	5.1	0.1	4.1	2	1	2	4	4	4	0	DASH	complex	subunit	Dam1
Tektin	PF03148.14	gi|384434646|ref|YP_005644004.1|	-	0.9	8.2	25.3	0.56	8.9	10.0	2.7	1	1	1	2	2	2	0	Tektin	family
YkyA	PF10368.9	gi|384434646|ref|YP_005644004.1|	-	0.91	9.2	26.4	1.4	8.6	23.0	2.3	1	1	0	2	2	2	0	Putative	cell-wall	binding	lipoprotein
Nsp1_C	PF05064.13	gi|384434646|ref|YP_005644004.1|	-	0.94	9.3	19.5	3.3	7.6	6.0	2.8	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
LOH1CR12	PF10158.9	gi|384434646|ref|YP_005644004.1|	-	0.96	9.5	14.4	1.2	9.2	6.0	3.2	1	1	3	4	4	4	0	Tumour	suppressor	protein
GARP	PF16731.5	gi|384434646|ref|YP_005644004.1|	-	0.96	9.1	19.5	0.98	9.1	2.3	3.1	1	1	2	3	3	3	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
COG5	PF10392.9	gi|384434646|ref|YP_005644004.1|	-	1	9.6	15.3	5.3	7.2	11.4	2.3	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
TSNAXIP1_N	PF15739.5	gi|384434646|ref|YP_005644004.1|	-	1.5	9.3	25.3	0.27	11.6	6.9	3.4	1	1	2	3	3	3	0	Translin-associated	factor	X-interacting	N-terminus
HemX	PF04375.14	gi|384434646|ref|YP_005644004.1|	-	1.5	8.1	20.9	1.4	8.1	12.7	2.2	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF4446	PF14584.6	gi|384434646|ref|YP_005644004.1|	-	1.5	8.8	16.4	1.7	8.6	3.1	3.3	1	1	3	4	4	3	0	Protein	of	unknown	function	(DUF4446)
GAT	PF03127.14	gi|384434646|ref|YP_005644004.1|	-	1.5	9.2	14.2	0.57	10.5	5.5	3.6	1	1	3	4	4	4	0	GAT	domain
TPR_MLP1_2	PF07926.12	gi|384434646|ref|YP_005644004.1|	-	1.7	8.7	28.6	0.41	10.7	17.3	2.4	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
CtIP_N	PF10482.9	gi|384434646|ref|YP_005644004.1|	-	1.7	8.7	18.8	0.81	9.8	6.7	2.7	1	1	0	2	2	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
Cytochrom_C_2	PF01322.20	gi|384434646|ref|YP_005644004.1|	-	1.8	9.5	10.4	23	5.9	8.0	3.2	1	1	1	2	2	2	0	Cytochrome	C'
T3SSipB	PF16535.5	gi|384434646|ref|YP_005644004.1|	-	1.9	8.9	17.3	6.6	7.2	15.9	2.0	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
Prominin	PF05478.11	gi|384434646|ref|YP_005644004.1|	-	2.1	6.2	16.9	1.2	7.1	9.7	1.8	1	1	1	2	2	2	0	Prominin
Sec20	PF03908.13	gi|384434646|ref|YP_005644004.1|	-	2.2	8.2	10.4	0.93	9.5	1.2	3.2	1	1	2	3	3	3	0	Sec20
Tweety	PF04906.13	gi|384434646|ref|YP_005644004.1|	-	3	6.4	10.0	3.3	6.3	6.3	1.9	1	1	1	2	2	2	0	Tweety
ECH_2	PF16113.5	gi|384434646|ref|YP_005644004.1|	-	3	7.3	12.0	6.3	6.2	12.1	1.6	1	1	0	1	1	1	0	Enoyl-CoA	hydratase/isomerase
DUF1216	PF06746.11	gi|384434646|ref|YP_005644004.1|	-	3.3	7.7	14.3	13	5.8	14.3	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1216)
Fez1	PF06818.15	gi|384434646|ref|YP_005644004.1|	-	3.3	8.1	24.2	3.7	7.9	19.7	2.1	1	1	1	2	2	2	0	Fez1
EDR1	PF14381.6	gi|384434646|ref|YP_005644004.1|	-	3.3	7.4	9.3	3	7.5	6.5	2.0	1	1	1	2	2	2	0	Ethylene-responsive	protein	kinase	Le-CTR1
Fusion_gly	PF00523.18	gi|384434646|ref|YP_005644004.1|	-	3.5	5.8	9.7	4.5	5.4	2.4	2.8	1	1	2	3	3	3	0	Fusion	glycoprotein	F0
BCAS2	PF05700.11	gi|384434646|ref|YP_005644004.1|	-	4.5	6.9	22.2	8.8	6.0	5.7	3.1	1	1	2	3	3	3	0	Breast	carcinoma	amplified	sequence	2	(BCAS2)
FliD_N	PF02465.18	gi|384434646|ref|YP_005644004.1|	-	4.5	8.0	14.8	32	5.3	2.7	3.3	1	1	2	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
DHR10	PF18595.1	gi|384434646|ref|YP_005644004.1|	-	4.6	7.3	33.4	8	6.5	14.4	2.5	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
Fmp27_WPPW	PF10359.9	gi|384434646|ref|YP_005644004.1|	-	4.6	6.0	17.6	1.7	7.4	13.9	1.9	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1366	PF07104.11	gi|384434646|ref|YP_005644004.1|	-	4.7	6.9	15.7	6.1	6.6	5.3	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1366)
DUF724	PF05266.14	gi|384434646|ref|YP_005644004.1|	-	4.9	6.9	28.7	5.5	6.8	11.0	2.5	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF724)
ARGLU	PF15346.6	gi|384434646|ref|YP_005644004.1|	-	4.9	7.0	34.5	14	5.5	12.2	2.5	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
zf-C4H2	PF10146.9	gi|384434646|ref|YP_005644004.1|	-	4.9	7.4	22.9	24	5.1	21.5	2.1	1	1	1	2	2	2	0	Zinc	finger-containing	protein
KxDL	PF10241.9	gi|384434646|ref|YP_005644004.1|	-	5.4	7.4	17.8	13	6.2	2.9	3.3	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
Nup88	PF10168.9	gi|384434646|ref|YP_005644004.1|	-	6	4.6	18.5	7.2	4.3	18.5	1.1	1	0	0	1	1	1	0	Nuclear	pore	component
bZIP_1	PF00170.21	gi|384434646|ref|YP_005644004.1|	-	6.7	6.9	29.4	0.74	10.0	5.4	4.7	1	1	4	5	5	5	0	bZIP	transcription	factor
Troponin	PF00992.20	gi|384434646|ref|YP_005644004.1|	-	7.3	6.9	29.5	10	6.4	8.4	3.0	1	1	2	3	3	3	0	Troponin
Atg14	PF10186.9	gi|384434646|ref|YP_005644004.1|	-	7.7	5.5	25.9	5.2	6.1	18.5	2.1	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Flagellar_rod	PF05149.12	gi|384434646|ref|YP_005644004.1|	-	8.1	5.8	24.6	13	5.1	1.0	2.5	1	1	2	3	3	3	0	Paraflagellar	rod	protein
UPF0242	PF06785.11	gi|384434646|ref|YP_005644004.1|	-	8.2	6.5	27.4	4	7.5	3.9	2.3	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF948	PF06103.11	gi|384434646|ref|YP_005644004.1|	-	8.4	6.7	15.1	3.2	8.1	2.9	3.4	2	1	2	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Lsr2	PF11774.8	gi|384434646|ref|YP_005644004.1|	-	8.5	6.6	14.1	6.1	7.0	0.1	3.9	2	1	2	4	4	4	0	Lsr2
DUF2164	PF09932.9	gi|384434646|ref|YP_005644004.1|	-	8.7	6.5	11.5	40	4.4	0.3	5.0	3	2	3	6	6	5	0	Uncharacterized	conserved	protein	(DUF2164)
PhageMin_Tail	PF10145.9	gi|384434646|ref|YP_005644004.1|	-	8.7	6.1	11.5	16	5.3	5.5	3.1	2	1	2	4	4	3	0	Phage-related	minor	tail	protein
Med4	PF10018.9	gi|384434646|ref|YP_005644004.1|	-	8.9	5.9	24.2	11	5.6	7.1	3.2	1	1	1	2	2	1	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
Cytochrom_C552	PF02335.15	gi|384434646|ref|YP_005644004.1|	-	9.5	5.0	8.5	13	4.5	8.5	1.1	1	0	0	1	1	1	0	Cytochrome	c552
E2F_TDP	PF02319.20	gi|384434646|ref|YP_005644004.1|	-	9.6	6.3	11.4	2.2e+02	2.0	4.6	3.8	1	1	1	2	2	2	0	E2F/DP	family	winged-helix	DNA-binding	domain
COG6	PF06419.11	gi|384434646|ref|YP_005644004.1|	-	9.9	4.2	19.5	3.9	5.6	8.6	2.2	1	1	1	2	2	2	0	Conserved	oligomeric	complex	COG6
MR_MLE_C	PF13378.6	gi|384434647|ref|YP_005644005.1|	-	4.1e-40	137.7	0.0	6.2e-40	137.1	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|384434647|ref|YP_005644005.1|	-	9.3e-07	29.1	0.0	1.5e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
DUF4792	PF16040.5	gi|384434647|ref|YP_005644005.1|	-	0.13	12.2	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4792)
GD_AH_C	PF04295.13	gi|384434648|ref|YP_005644006.1|	-	4.5e-122	407.6	0.0	5e-122	407.5	0.0	1.0	1	0	0	1	1	1	1	D-galactarate	dehydratase	/	Altronate	hydrolase,	C	terminus
SAF	PF08666.12	gi|384434649|ref|YP_005644007.1|	-	2.8e-19	69.5	1.8	3.3e-19	69.3	1.8	1.1	1	0	0	1	1	1	1	SAF	domain
UPA	PF17217.3	gi|384434650|ref|YP_005644008.1|	-	0.1	12.5	0.0	0.11	12.4	0.0	1.0	1	0	0	1	1	1	0	UPA	domain
LDcluster4	PF18306.1	gi|384434651|ref|YP_005644009.1|	-	2e-17	63.2	0.0	2.4e-17	62.9	0.0	1.1	1	0	0	1	1	1	1	SLOG	cluster4	family
Nuc_deoxyrib_tr	PF05014.15	gi|384434651|ref|YP_005644009.1|	-	0.054	13.5	0.0	0.084	12.9	0.0	1.4	1	0	0	1	1	1	0	Nucleoside	2-deoxyribosyltransferase
Lysine_decarbox	PF03641.14	gi|384434651|ref|YP_005644009.1|	-	0.11	12.6	0.1	0.24	11.5	0.1	1.9	1	1	1	2	2	2	0	Possible	lysine	decarboxylase
LIFR_D2	PF17971.1	gi|384434652|ref|YP_005644010.1|	-	0.038	14.2	0.7	3.3	7.9	0.2	2.1	1	1	1	2	2	2	0	Leukemia	inhibitory	factor	receptor	D2	domain
DUF1418	PF07214.12	gi|384434652|ref|YP_005644010.1|	-	2.7	7.9	5.7	6.6	6.7	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1418)
ABC_tran	PF00005.27	gi|384434654|ref|YP_005644012.1|	-	4.3e-24	85.6	0.0	8.1e-24	84.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384434654|ref|YP_005644012.1|	-	2.2e-15	57.3	0.9	1.5e-06	28.3	0.1	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|384434654|ref|YP_005644012.1|	-	1.4e-05	25.0	0.4	0.0027	17.5	0.1	2.4	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|384434654|ref|YP_005644012.1|	-	0.00082	19.9	0.6	0.0029	18.2	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384434654|ref|YP_005644012.1|	-	0.016	15.5	0.0	0.036	14.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|384434654|ref|YP_005644012.1|	-	0.022	14.5	0.0	0.045	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|384434654|ref|YP_005644012.1|	-	0.022	14.4	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
MeaB	PF03308.16	gi|384434654|ref|YP_005644012.1|	-	0.05	12.6	0.0	0.081	11.9	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_29	PF13555.6	gi|384434654|ref|YP_005644012.1|	-	0.052	13.3	0.5	0.1	12.4	0.5	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|384434654|ref|YP_005644012.1|	-	0.065	13.2	0.1	0.12	12.3	0.1	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|384434654|ref|YP_005644012.1|	-	0.11	11.9	0.5	3	7.2	0.1	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|384434654|ref|YP_005644012.1|	-	0.13	12.5	0.0	0.42	10.8	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|384434654|ref|YP_005644012.1|	-	0.19	12.1	0.1	1.5	9.2	0.0	2.1	2	1	0	2	2	2	0	AAA	ATPase	domain
SIS	PF01380.22	gi|384434655|ref|YP_005644013.1|	-	1.1e-34	119.1	1.7	1.5e-23	83.1	0.6	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|384434655|ref|YP_005644013.1|	-	3.8e-15	56.3	0.0	6.6e-15	55.5	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|384434655|ref|YP_005644013.1|	-	3e-12	46.5	0.0	6.6e-12	45.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|384434655|ref|YP_005644013.1|	-	0.00022	21.2	0.7	0.0023	18.0	0.3	2.6	2	1	1	3	3	3	1	SIS	domain
GATase_4	PF13230.6	gi|384434655|ref|YP_005644013.1|	-	0.076	11.9	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
Synapsin_N	PF10581.9	gi|384434657|ref|YP_005644015.1|	-	0.077	13.0	0.0	0.22	11.5	0.0	1.7	1	0	0	1	1	1	0	Synapsin	N-terminal
YdaT_toxin	PF06254.11	gi|384434658|ref|YP_005644016.1|	-	0.0088	16.6	0.0	0.014	16.0	0.0	1.3	1	0	0	1	1	1	1	Putative	bacterial	toxin	ydaT
tRNA_SAD	PF07973.14	gi|384434658|ref|YP_005644016.1|	-	0.028	14.5	0.0	0.05	13.7	0.0	1.4	1	0	0	1	1	1	0	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DUF871	PF05913.11	gi|384434659|ref|YP_005644017.1|	-	1e-55	189.4	0.0	1.3e-55	189.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF871)
SBP_bac_5	PF00496.22	gi|384434660|ref|YP_005644018.1|	-	6.6e-21	74.7	7.0	1.4e-16	60.5	1.1	3.4	3	0	0	3	3	3	3	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
DUF1285	PF06938.11	gi|384434660|ref|YP_005644018.1|	-	0.19	11.8	0.0	0.44	10.6	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1285)
Stevor	PF17410.2	gi|384434660|ref|YP_005644018.1|	-	0.22	11.0	11.0	0.41	10.1	11.0	1.4	1	0	0	1	1	1	0	Subtelomeric	Variable	Open	Reading	frame
RIFIN	PF02009.16	gi|384434660|ref|YP_005644018.1|	-	1.4	8.7	9.1	3	7.7	9.1	1.5	1	0	0	1	1	1	0	Rifin
TMEM154	PF15102.6	gi|384434660|ref|YP_005644018.1|	-	9	6.2	15.0	17	5.3	15.0	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
BPD_transp_1	PF00528.22	gi|384434661|ref|YP_005644019.1|	-	6.1e-36	123.9	15.0	6.1e-36	123.9	15.0	2.9	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384434662|ref|YP_005644020.1|	-	4.1e-13	49.5	21.7	4.1e-13	49.5	21.7	2.4	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|384434662|ref|YP_005644020.1|	-	0.0038	17.2	0.3	0.0038	17.2	0.3	2.5	2	1	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|384434663|ref|YP_005644021.1|	-	3.1e-25	89.3	0.0	4.5e-25	88.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384434663|ref|YP_005644021.1|	-	6.8e-18	64.9	0.0	1.1e-17	64.3	0.0	1.3	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|384434663|ref|YP_005644021.1|	-	1.9e-09	37.8	2.3	3.7e-07	30.3	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384434663|ref|YP_005644021.1|	-	2.1e-06	27.4	1.1	2.7e-05	23.7	1.1	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TniB	PF05621.11	gi|384434663|ref|YP_005644021.1|	-	0.00027	20.4	1.5	0.00082	18.8	0.3	2.1	2	1	0	2	2	2	1	Bacterial	TniB	protein
AAA_29	PF13555.6	gi|384434663|ref|YP_005644021.1|	-	0.0029	17.3	0.0	0.0054	16.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|384434663|ref|YP_005644021.1|	-	0.012	16.1	0.0	0.12	13.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|384434663|ref|YP_005644021.1|	-	0.12	12.1	0.1	0.27	11.0	0.1	1.6	1	1	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_22	PF13401.6	gi|384434663|ref|YP_005644021.1|	-	0.16	12.3	1.1	17	5.7	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|384434664|ref|YP_005644022.1|	-	6.2e-28	98.0	0.0	8.7e-28	97.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384434664|ref|YP_005644022.1|	-	9.3e-21	74.1	0.0	1.6e-20	73.4	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
T2SSE	PF00437.20	gi|384434664|ref|YP_005644022.1|	-	0.0055	15.8	0.1	0.0081	15.2	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
SMC_N	PF02463.19	gi|384434664|ref|YP_005644022.1|	-	0.008	15.6	0.3	0.064	12.7	0.3	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|384434664|ref|YP_005644022.1|	-	0.012	15.4	0.3	0.025	14.3	0.3	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|384434664|ref|YP_005644022.1|	-	0.026	14.8	0.7	0.11	12.7	0.7	2.0	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|384434664|ref|YP_005644022.1|	-	0.075	12.2	1.0	0.16	11.1	0.4	1.8	2	0	0	2	2	2	0	NB-ARC	domain
AAA_14	PF13173.6	gi|384434664|ref|YP_005644022.1|	-	0.098	12.7	0.1	0.2	11.7	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_21	PF13304.6	gi|384434664|ref|YP_005644022.1|	-	0.12	12.1	0.2	11	5.8	0.2	2.1	1	1	1	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|384434664|ref|YP_005644022.1|	-	0.19	12.2	0.6	2.8	8.4	0.6	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|384434664|ref|YP_005644022.1|	-	0.25	11.7	0.2	0.34	11.3	0.2	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
DAG1	PF05454.11	gi|384434666|ref|YP_005644024.1|	-	0.013	14.9	2.0	0.024	14.0	2.0	1.5	1	1	0	1	1	1	0	Dystroglycan	(Dystrophin-associated	glycoprotein	1)
FeoB_associated	PF12669.7	gi|384434666|ref|YP_005644024.1|	-	0.34	11.3	1.5	0.63	10.5	1.5	1.4	1	0	0	1	1	1	0	FeoB-associated	Cys-rich	membrane	protein
ABC_tran	PF00005.27	gi|384434667|ref|YP_005644025.1|	-	1.1e-28	100.5	0.0	1.4e-28	100.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384434667|ref|YP_005644025.1|	-	1.7e-19	70.1	0.0	2.8e-19	69.4	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|384434667|ref|YP_005644025.1|	-	0.0021	18.3	0.0	0.0078	16.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|384434667|ref|YP_005644025.1|	-	0.0057	16.5	2.9	0.14	11.9	0.6	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384434667|ref|YP_005644025.1|	-	0.012	15.3	0.2	0.022	14.5	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.22	gi|384434667|ref|YP_005644025.1|	-	0.058	12.6	0.1	0.11	11.6	0.1	1.5	1	1	0	1	1	1	0	NB-ARC	domain
AAA_16	PF13191.6	gi|384434667|ref|YP_005644025.1|	-	0.11	12.9	0.1	0.17	12.2	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
TsaE	PF02367.17	gi|384434667|ref|YP_005644025.1|	-	0.11	12.5	0.1	0.19	11.7	0.1	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|384434668|ref|YP_005644026.1|	-	3.6e-25	89.1	0.0	5.4e-25	88.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|384434668|ref|YP_005644026.1|	-	3.8e-20	72.2	0.0	7.4e-20	71.2	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
SMC_N	PF02463.19	gi|384434668|ref|YP_005644026.1|	-	4.3e-05	23.1	0.5	0.00045	19.7	0.5	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384434668|ref|YP_005644026.1|	-	6.3e-05	23.6	0.0	8.3e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ResIII	PF04851.15	gi|384434668|ref|YP_005644026.1|	-	9.4e-05	22.5	0.0	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.6	gi|384434668|ref|YP_005644026.1|	-	0.00096	19.6	0.0	0.0014	19.0	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|384434668|ref|YP_005644026.1|	-	0.0013	18.6	1.4	0.32	10.8	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|384434668|ref|YP_005644026.1|	-	0.0017	18.6	0.0	0.0025	18.1	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_7	PF12775.7	gi|384434668|ref|YP_005644026.1|	-	0.0029	17.2	0.0	0.0047	16.5	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
AAA_15	PF13175.6	gi|384434668|ref|YP_005644026.1|	-	0.0033	17.2	0.3	0.0033	17.2	0.3	1.5	2	0	0	2	2	2	1	AAA	ATPase	domain
DUF87	PF01935.17	gi|384434668|ref|YP_005644026.1|	-	0.0038	17.3	0.3	0.0082	16.3	0.1	1.6	1	1	1	2	2	2	1	Helicase	HerA,	central	domain
AAA_29	PF13555.6	gi|384434668|ref|YP_005644026.1|	-	0.0048	16.6	0.0	0.0091	15.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|384434668|ref|YP_005644026.1|	-	0.0095	16.5	0.0	0.016	15.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|384434668|ref|YP_005644026.1|	-	0.011	14.8	0.0	0.017	14.2	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|384434668|ref|YP_005644026.1|	-	0.014	15.3	0.0	0.025	14.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.22	gi|384434668|ref|YP_005644026.1|	-	0.033	13.4	0.0	0.049	12.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|384434668|ref|YP_005644026.1|	-	0.047	14.1	0.0	0.084	13.3	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA	PF00004.29	gi|384434668|ref|YP_005644026.1|	-	0.049	14.0	0.0	0.087	13.2	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|384434668|ref|YP_005644026.1|	-	0.05	12.9	0.0	0.095	12.0	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF2075	PF09848.9	gi|384434668|ref|YP_005644026.1|	-	0.055	12.7	0.0	0.079	12.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
MMR_HSR1	PF01926.23	gi|384434668|ref|YP_005644026.1|	-	0.067	13.3	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.14	gi|384434668|ref|YP_005644026.1|	-	0.072	13.1	0.0	0.13	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|384434668|ref|YP_005644026.1|	-	0.13	12.0	0.0	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Dynamin_N	PF00350.23	gi|384434668|ref|YP_005644026.1|	-	0.14	12.2	0.4	0.26	11.3	0.4	1.6	1	1	0	1	1	1	0	Dynamin	family
cobW	PF02492.19	gi|384434668|ref|YP_005644026.1|	-	0.14	11.7	0.0	0.3	10.6	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|384434668|ref|YP_005644026.1|	-	0.16	11.2	0.0	0.25	10.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
ATP-synt_ab	PF00006.25	gi|384434668|ref|YP_005644026.1|	-	0.17	11.5	0.0	0.18	11.4	0.0	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
IstB_IS21	PF01695.17	gi|384434668|ref|YP_005644026.1|	-	0.17	11.6	0.1	0.39	10.4	0.0	1.6	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
BPD_transp_1	PF00528.22	gi|384434669|ref|YP_005644027.1|	-	1.7e-26	93.1	19.0	1.7e-26	93.1	19.0	2.3	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|384434670|ref|YP_005644028.1|	-	2.8e-33	115.2	18.3	2.8e-33	115.2	18.3	2.4	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF772	PF05598.11	gi|384434671|ref|YP_005644029.1|	-	3.3e-09	36.6	0.0	4.9e-09	36.1	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
Gtr1_RagA	PF04670.12	gi|384434671|ref|YP_005644029.1|	-	0.061	12.7	0.1	0.073	12.4	0.1	1.1	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
HALZ	PF02183.18	gi|384434673|ref|YP_005644031.1|	-	0.00025	21.2	10.6	0.061	13.6	0.7	3.9	1	1	2	3	3	3	2	Homeobox	associated	leucine	zipper
ZapB	PF06005.12	gi|384434673|ref|YP_005644031.1|	-	0.0024	18.3	0.0	0.19	12.2	0.0	2.5	1	1	1	2	2	2	1	Cell	division	protein	ZapB
ADIP	PF11559.8	gi|384434673|ref|YP_005644031.1|	-	0.0042	17.2	0.1	0.0042	17.2	0.1	2.2	3	0	0	3	3	2	1	Afadin-	and	alpha	-actinin-Binding
DivIC	PF04977.15	gi|384434673|ref|YP_005644031.1|	-	0.0043	16.8	1.4	2.2	8.1	0.1	2.7	1	1	1	2	2	2	2	Septum	formation	initiator
GAS	PF13851.6	gi|384434673|ref|YP_005644031.1|	-	0.0044	16.4	0.1	0.0078	15.6	0.1	1.3	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Mod_r	PF07200.13	gi|384434673|ref|YP_005644031.1|	-	0.0055	16.8	3.5	0.028	14.5	3.5	2.0	1	1	0	1	1	1	1	Modifier	of	rudimentary	(Mod(r))	protein
Syntaxin_2	PF14523.6	gi|384434673|ref|YP_005644031.1|	-	0.0074	16.6	1.2	0.019	15.3	1.2	1.6	1	0	0	1	1	1	1	Syntaxin-like	protein
DUF1043	PF06295.12	gi|384434673|ref|YP_005644031.1|	-	0.0092	16.0	1.2	0.019	14.9	1.2	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1043)
Spc7	PF08317.11	gi|384434673|ref|YP_005644031.1|	-	0.014	14.3	0.1	0.043	12.7	0.1	1.6	1	1	0	1	1	1	0	Spc7	kinetochore	protein
FapA	PF03961.13	gi|384434673|ref|YP_005644031.1|	-	0.015	14.0	0.1	0.032	12.8	0.0	1.5	2	0	0	2	2	2	0	Flagellar	Assembly	Protein	A
TPR_MLP1_2	PF07926.12	gi|384434673|ref|YP_005644031.1|	-	0.016	15.3	0.3	0.026	14.6	0.3	1.3	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
Bap31_Bap29_C	PF18035.1	gi|384434673|ref|YP_005644031.1|	-	0.019	15.0	0.9	2.5	8.2	0.5	2.9	1	1	0	2	2	2	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
DUF4320	PF14208.6	gi|384434673|ref|YP_005644031.1|	-	0.02	15.0	0.4	0.072	13.2	0.4	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4320)
Baculo_PEP_C	PF04513.12	gi|384434673|ref|YP_005644031.1|	-	0.023	14.7	14.6	0.13	12.3	4.7	3.0	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
IFT57	PF10498.9	gi|384434673|ref|YP_005644031.1|	-	0.037	13.0	7.6	0.56	9.1	0.6	2.1	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
Lectin_N	PF03954.14	gi|384434673|ref|YP_005644031.1|	-	0.089	12.5	0.2	0.3	10.8	0.2	1.9	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Scaffolding_pro	PF11418.8	gi|384434673|ref|YP_005644031.1|	-	0.12	12.9	3.1	3.5	8.2	0.2	2.6	1	1	1	2	2	2	0	Phi29	scaffolding	protein
BRE1	PF08647.11	gi|384434673|ref|YP_005644031.1|	-	0.17	12.0	0.1	0.36	10.9	0.1	1.6	1	0	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
DUF4446	PF14584.6	gi|384434673|ref|YP_005644031.1|	-	0.21	11.5	8.1	0.026	14.5	3.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
PI3K_P85_iSH2	PF16454.5	gi|384434673|ref|YP_005644031.1|	-	0.29	10.7	4.5	0.39	10.3	0.6	2.3	1	1	1	2	2	2	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
SHE3	PF17078.5	gi|384434673|ref|YP_005644031.1|	-	0.61	9.8	12.9	0.65	9.7	9.4	2.5	2	1	0	2	2	2	0	SWI5-dependent	HO	expression	protein	3
DUF4458	PF14660.6	gi|384434673|ref|YP_005644031.1|	-	1.5	9.1	9.7	0.75	10.1	5.7	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4458)
EzrA	PF06160.12	gi|384434673|ref|YP_005644031.1|	-	2.1	6.5	12.3	0.31	9.1	3.9	2.1	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
YkyA	PF10368.9	gi|384434673|ref|YP_005644031.1|	-	5.4	6.6	10.8	12	5.5	10.8	1.5	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
SBP_bac_5	PF00496.22	gi|384434674|ref|YP_005644032.1|	-	3.7e-31	108.4	11.3	1e-19	70.8	1.7	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Mucin	PF01456.17	gi|384434674|ref|YP_005644032.1|	-	0.091	12.8	13.0	0.21	11.6	13.0	1.5	1	0	0	1	1	1	0	Mucin-like	glycoprotein
AAA_14	PF13173.6	gi|384434675|ref|YP_005644033.1|	-	1.1e-28	99.9	0.1	2.4e-28	98.8	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.6	gi|384434675|ref|YP_005644033.1|	-	4.6e-13	49.4	0.5	8.4e-13	48.5	0.5	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
AAA_24	PF13479.6	gi|384434675|ref|YP_005644033.1|	-	0.0022	17.8	0.1	0.012	15.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|384434675|ref|YP_005644033.1|	-	0.051	13.9	0.1	5.3	7.3	0.0	2.9	2	1	1	3	3	3	0	AAA	domain
Glycos_transf_2	PF00535.26	gi|384434676|ref|YP_005644034.1|	-	1.3e-09	38.1	0.1	1.9e-09	37.6	0.1	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_4	PF13704.6	gi|384434676|ref|YP_005644034.1|	-	0.022	15.2	0.0	0.043	14.3	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
OGG_N	PF07934.12	gi|384434676|ref|YP_005644034.1|	-	0.081	13.0	0.1	0.14	12.3	0.1	1.3	1	0	0	1	1	1	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
AA_permease	PF00324.21	gi|384434677|ref|YP_005644035.1|	-	4e-09	35.6	51.5	2.1e-08	33.2	51.5	2.1	1	1	0	1	1	1	1	Amino	acid	permease
XdhC_C	PF13478.6	gi|384434678|ref|YP_005644036.1|	-	3.5e-22	79.2	0.0	4.8e-22	78.8	0.0	1.1	1	0	0	1	1	1	1	XdhC	Rossmann	domain
CbiA	PF01656.23	gi|384434679|ref|YP_005644037.1|	-	7.7e-10	38.9	0.0	1.3e-09	38.1	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|384434679|ref|YP_005644037.1|	-	1.4e-08	34.9	0.8	2.3e-08	34.2	0.2	1.7	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|384434679|ref|YP_005644037.1|	-	0.00026	20.5	2.1	0.00062	19.3	0.3	2.0	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|384434679|ref|YP_005644037.1|	-	0.00042	19.6	0.1	0.00042	19.6	0.1	2.4	2	1	1	3	3	3	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|384434679|ref|YP_005644037.1|	-	0.0044	16.5	0.0	0.0066	15.9	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
AAA_24	PF13479.6	gi|384434679|ref|YP_005644037.1|	-	0.35	10.6	2.4	1.4	8.6	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
Ribosomal_L7Ae	PF01248.26	gi|384434681|ref|YP_005644039.1|	-	0.0028	17.3	2.2	0.0038	16.9	0.9	1.8	2	0	0	2	2	2	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
Guanylin	PF02058.15	gi|384434681|ref|YP_005644039.1|	-	0.098	13.1	0.0	1	9.9	0.0	2.1	2	0	0	2	2	2	0	Guanylin	precursor
Glyco_tranf_2_3	PF13641.6	gi|384434682|ref|YP_005644040.1|	-	2.9e-21	76.4	0.0	3.8e-21	76.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|384434682|ref|YP_005644040.1|	-	4.3e-20	72.2	0.2	9.7e-20	71.1	0.2	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.6	gi|384434682|ref|YP_005644040.1|	-	1.5e-15	57.1	0.0	3.1e-15	56.1	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.6	gi|384434682|ref|YP_005644040.1|	-	1.9e-13	50.8	0.7	3.3e-13	50.0	0.6	1.5	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Chitin_synth_2	PF03142.15	gi|384434682|ref|YP_005644040.1|	-	0.028	13.1	0.5	0.55	8.8	0.3	2.2	2	0	0	2	2	2	0	Chitin	synthase
DUF4322	PF14210.6	gi|384434683|ref|YP_005644041.1|	-	4.8e-15	55.2	0.1	9.6e-15	54.2	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
ADH_N	PF08240.12	gi|384434684|ref|YP_005644042.1|	-	2.1e-29	101.6	0.2	3.5e-29	100.9	0.2	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384434684|ref|YP_005644042.1|	-	2.6e-17	63.0	0.1	4.8e-17	62.1	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384434684|ref|YP_005644042.1|	-	5.6e-11	43.6	0.0	1.1e-10	42.6	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
MR_MLE_C	PF13378.6	gi|384434686|ref|YP_005644044.1|	-	5.4e-47	160.2	0.0	7.1e-47	159.8	0.0	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|384434686|ref|YP_005644044.1|	-	5.4e-06	26.6	0.0	8.6e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MFS_1	PF07690.16	gi|384434688|ref|YP_005644046.1|	-	8e-42	143.4	32.2	8e-42	143.4	32.2	1.5	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384434688|ref|YP_005644046.1|	-	1.2e-20	73.8	28.2	2.5e-20	72.8	28.2	1.4	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_4	PF06779.14	gi|384434688|ref|YP_005644046.1|	-	4.2e-08	32.9	1.0	4.2e-08	32.9	1.0	2.1	3	0	0	3	3	3	1	Uncharacterised	MFS-type	transporter	YbfB
Cyclase	PF04199.13	gi|384434689|ref|YP_005644047.1|	-	5.3e-26	91.5	0.0	7.4e-26	91.0	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
T4_neck-protein	PF11649.8	gi|384434689|ref|YP_005644047.1|	-	0.098	12.0	0.2	1.3	8.3	0.0	2.0	2	0	0	2	2	2	0	Virus	neck	protein
AAA_14	PF13173.6	gi|384434690|ref|YP_005644048.1|	-	0.083	12.9	0.2	0.083	12.9	0.2	4.6	4	0	0	4	4	4	0	AAA	domain
ABC_tran	PF00005.27	gi|384434690|ref|YP_005644048.1|	-	0.12	12.9	0.0	9.4	6.8	0.0	2.7	2	0	0	2	2	2	0	ABC	transporter
Cas_DxTHG	PF09455.10	gi|384434691|ref|YP_005644049.1|	-	1.1e-16	61.4	6.6	2.1e-16	60.5	6.6	1.5	1	1	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
HSP90	PF00183.18	gi|384434692|ref|YP_005644050.1|	-	0.13	11.1	0.0	0.14	11.0	0.0	1.0	1	0	0	1	1	1	0	Hsp90	protein
Csa1	PF06023.12	gi|384434693|ref|YP_005644051.1|	-	4.2e-122	407.1	0.0	4.7e-122	406.9	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
Cas_Cas4	PF01930.17	gi|384434694|ref|YP_005644052.1|	-	5.3e-32	111.2	0.2	6.3e-32	110.9	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|384434694|ref|YP_005644052.1|	-	3e-06	27.3	0.1	3.5e-06	27.1	0.1	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_APE2256	PF09651.10	gi|384434695|ref|YP_005644053.1|	-	8e-35	119.7	0.1	1.5e-34	118.8	0.1	1.5	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
Cas_Cas02710	PF09670.10	gi|384434695|ref|YP_005644053.1|	-	0.0062	15.4	0.0	0.011	14.6	0.0	1.3	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
Dot_icm_IcmQ	PF09475.10	gi|384434695|ref|YP_005644053.1|	-	0.0069	15.9	0.1	0.012	15.1	0.1	1.4	1	0	0	1	1	1	1	Dot/Icm	secretion	system	protein	(dot_icm_IcmQ)
RVP	PF00077.20	gi|384434696|ref|YP_005644054.1|	-	0.047	14.0	0.0	0.056	13.8	0.0	1.1	1	0	0	1	1	1	0	Retroviral	aspartyl	protease
DUF4322	PF14210.6	gi|384434697|ref|YP_005644055.1|	-	4.8e-43	144.9	0.1	1.1e-42	143.7	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|384434697|ref|YP_005644055.1|	-	9.7e-08	31.9	0.0	1.6e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF4259	PF14078.6	gi|384434698|ref|YP_005644056.1|	-	0.19	12.5	0.0	0.28	11.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4259)
Cas_Csa5	PF09702.10	gi|384434699|ref|YP_005644057.1|	-	0.038	14.2	0.1	0.97	9.7	0.1	2.1	1	1	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csa5)
DevR	PF01905.16	gi|384434700|ref|YP_005644058.1|	-	6.9e-81	271.3	1.3	8e-81	271.0	1.3	1.0	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Cas_Cas5d	PF09704.10	gi|384434701|ref|YP_005644059.1|	-	0.01	15.7	0.0	1.9	8.3	0.0	2.2	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_Cas5)
Helicase_C	PF00271.31	gi|384434703|ref|YP_005644061.1|	-	4.6e-09	36.6	0.7	1.2e-08	35.2	0.7	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|384434703|ref|YP_005644061.1|	-	7.4e-08	32.3	0.1	1e-05	25.3	0.0	3.3	3	1	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|384434703|ref|YP_005644061.1|	-	2e-06	27.9	0.0	2.1e-05	24.6	0.0	2.6	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
Cyc-maltodext_C	PF10438.9	gi|384434703|ref|YP_005644061.1|	-	0.063	13.4	0.2	0.16	12.1	0.2	1.7	1	0	0	1	1	1	0	Cyclo-malto-dextrinase	C-terminal	domain
Phi-29_GP16_7	PF06720.11	gi|384434703|ref|YP_005644061.1|	-	0.31	10.9	3.7	5.8	6.8	0.0	3.1	2	1	0	3	3	3	0	Bacteriophage	phi-29	early	protein	GP16.7
HD_6	PF18019.1	gi|384434704|ref|YP_005644062.1|	-	0.0042	17.2	0.0	0.037	14.2	0.0	2.0	1	1	0	1	1	1	1	HD	domain
HD	PF01966.22	gi|384434704|ref|YP_005644062.1|	-	0.01	16.0	0.0	0.015	15.5	0.0	1.4	1	0	0	1	1	1	0	HD	domain
CRISPR_Cas2	PF09827.9	gi|384434705|ref|YP_005644063.1|	-	1.5e-21	76.3	0.5	1.9e-21	76.0	0.5	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
T3RM_EcoP15I_C	PF18273.1	gi|384434705|ref|YP_005644063.1|	-	0.023	15.0	0.1	0.035	14.4	0.1	1.3	1	0	0	1	1	1	0	Type	III	R-M	EcoP15I	C-terminal	domain
PglD_N	PF17836.1	gi|384434705|ref|YP_005644063.1|	-	0.039	14.6	0.1	0.066	13.9	0.1	1.4	1	1	0	1	1	1	0	PglD	N-terminal	domain
Cas_Cas1	PF01867.16	gi|384434706|ref|YP_005644064.1|	-	6.4e-61	206.0	0.0	8e-61	205.7	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
BRCT_3	PF18428.1	gi|384434706|ref|YP_005644064.1|	-	0.042	13.9	0.0	0.083	13.0	0.0	1.5	1	0	0	1	1	1	0	BRCA1	C	Terminus	(BRCT)	domain
Frankia_peptide	PF14407.6	gi|384434706|ref|YP_005644064.1|	-	0.12	12.4	0.1	0.24	11.4	0.1	1.5	1	0	0	1	1	1	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
DUF1870	PF08965.10	gi|384434706|ref|YP_005644064.1|	-	0.12	12.4	0.3	0.38	10.8	0.2	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1870)
CoA_binding_2	PF13380.6	gi|384434706|ref|YP_005644064.1|	-	0.12	12.8	0.1	0.57	10.7	0.0	2.0	2	0	0	2	2	2	0	CoA	binding	domain
Com_YlbF	PF06133.11	gi|384434706|ref|YP_005644064.1|	-	0.21	12.2	1.2	1.2	9.8	0.1	2.2	2	0	0	2	2	2	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
Cas6_N	PF17952.1	gi|384434707|ref|YP_005644065.1|	-	2.7e-41	140.4	5.3	4.1e-41	139.9	5.3	1.3	1	0	0	1	1	1	1	Cas6	N-terminal	domain
CRISPR_Cas6	PF10040.9	gi|384434707|ref|YP_005644065.1|	-	2.2e-18	66.7	0.1	3.7e-18	66.0	0.1	1.3	1	0	0	1	1	1	1	CRISPR-associated	endoribonuclease	Cas6
Cas_Cas6	PF01881.16	gi|384434707|ref|YP_005644065.1|	-	0.021	15.4	1.0	0.027	15.0	0.3	1.5	2	0	0	2	2	2	0	CRISPR	associated	protein	Cas6
DUF2535	PF10751.9	gi|384434707|ref|YP_005644065.1|	-	0.12	12.9	2.3	0.2	12.2	0.2	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2535)
DDE_Tnp_1	PF01609.21	gi|384434709|ref|YP_005644067.1|	-	2.1e-16	60.2	0.0	2.8e-16	59.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
AAA_14	PF13173.6	gi|384434710|ref|YP_005644068.1|	-	2.6e-24	85.7	0.1	4.7e-24	84.9	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|384434710|ref|YP_005644068.1|	-	1e-05	25.6	0.1	2.7e-05	24.2	0.0	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA	PF00004.29	gi|384434710|ref|YP_005644068.1|	-	0.00011	22.6	0.0	0.00027	21.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
HTH_11	PF08279.12	gi|384434710|ref|YP_005644068.1|	-	0.0012	18.7	0.2	0.0036	17.2	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
DUF4143	PF13635.6	gi|384434710|ref|YP_005644068.1|	-	0.0047	17.1	0.0	0.0072	16.5	0.0	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
HTH_10	PF04967.12	gi|384434710|ref|YP_005644068.1|	-	0.011	15.5	0.2	1.3	8.9	0.0	2.5	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_23	PF13384.6	gi|384434710|ref|YP_005644068.1|	-	0.012	15.4	0.0	0.031	14.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
AAA_22	PF13401.6	gi|384434710|ref|YP_005644068.1|	-	0.018	15.3	0.0	0.13	12.5	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|384434710|ref|YP_005644068.1|	-	0.021	14.7	0.5	1.2	9.0	0.5	2.3	1	1	0	1	1	1	0	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|384434710|ref|YP_005644068.1|	-	0.025	15.0	0.0	0.054	13.9	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|384434710|ref|YP_005644068.1|	-	0.039	13.9	0.3	0.13	12.2	0.0	2.0	3	0	0	3	3	3	0	NTPase
MobB	PF03205.14	gi|384434710|ref|YP_005644068.1|	-	0.041	13.8	0.1	0.3	11.0	0.0	2.3	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CLP1_P	PF16575.5	gi|384434710|ref|YP_005644068.1|	-	0.043	13.6	0.1	0.18	11.6	0.0	2.1	2	1	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_16	PF13191.6	gi|384434710|ref|YP_005644068.1|	-	0.095	13.1	0.0	0.15	12.4	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
Roc	PF08477.13	gi|384434710|ref|YP_005644068.1|	-	0.11	12.8	0.0	0.43	10.8	0.0	2.1	2	0	0	2	2	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MMR_HSR1	PF01926.23	gi|384434710|ref|YP_005644068.1|	-	0.11	12.6	0.2	0.53	10.4	0.0	2.3	3	1	0	3	3	2	0	50S	ribosome-binding	GTPase
HTH_28	PF13518.6	gi|384434710|ref|YP_005644068.1|	-	0.15	12.2	0.0	0.3	11.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA_5	PF07728.14	gi|384434710|ref|YP_005644068.1|	-	0.18	11.8	0.0	0.37	10.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Peptidase_S9	PF00326.21	gi|384434711|ref|YP_005644069.1|	-	3.1e-39	134.6	0.0	5.2e-39	133.9	0.0	1.4	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
DLH	PF01738.18	gi|384434711|ref|YP_005644069.1|	-	1.7e-08	34.3	0.0	6.2e-08	32.5	0.0	1.9	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
BAAT_C	PF08840.11	gi|384434711|ref|YP_005644069.1|	-	4.1e-08	33.4	0.0	0.00022	21.3	0.0	2.5	1	1	1	2	2	2	2	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_1	PF00561.20	gi|384434711|ref|YP_005644069.1|	-	5.8e-08	32.7	0.0	3.2e-05	23.7	0.1	2.3	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|384434711|ref|YP_005644069.1|	-	0.00013	21.3	0.0	0.23	10.7	0.0	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Peptidase_S15	PF02129.18	gi|384434711|ref|YP_005644069.1|	-	0.00047	19.8	0.0	0.026	14.1	0.0	2.3	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_6	PF12697.7	gi|384434711|ref|YP_005644069.1|	-	0.0017	19.0	0.0	0.0099	16.5	0.0	1.8	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_3	PF07859.13	gi|384434711|ref|YP_005644069.1|	-	0.0027	17.6	0.0	0.1	12.4	0.0	2.3	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
AXE1	PF05448.12	gi|384434711|ref|YP_005644069.1|	-	0.0064	15.2	0.0	0.012	14.3	0.0	1.5	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_4	PF08386.10	gi|384434711|ref|YP_005644069.1|	-	0.0083	16.2	0.0	0.018	15.2	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
UPF0227	PF05728.12	gi|384434711|ref|YP_005644069.1|	-	0.021	14.8	0.0	0.045	13.7	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
DUF2048	PF09752.9	gi|384434711|ref|YP_005644069.1|	-	0.025	13.7	0.0	0.042	12.9	0.0	1.3	1	0	0	1	1	1	0	Abhydrolase	domain	containing	18
Esterase	PF00756.20	gi|384434711|ref|YP_005644069.1|	-	0.03	14.0	0.0	0.045	13.4	0.0	1.3	1	0	0	1	1	1	0	Putative	esterase
DUF772	PF05598.11	gi|384434712|ref|YP_005644070.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434712|ref|YP_005644070.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
Cas_Cas4	PF01930.17	gi|384434713|ref|YP_005644071.1|	-	1.3e-15	57.8	0.1	1.5e-15	57.6	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|384434713|ref|YP_005644071.1|	-	1.8e-06	28.1	0.0	4.2e-06	26.9	0.0	1.6	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
CENP-T_C	PF15511.6	gi|384434713|ref|YP_005644071.1|	-	0.084	13.0	0.1	0.21	11.7	0.1	1.6	1	1	0	1	1	1	0	Centromere	kinetochore	component	CENP-T	histone	fold
CRISPR_Cas2	PF09827.9	gi|384434714|ref|YP_005644072.1|	-	1.1e-17	64.0	0.2	1.2e-17	63.8	0.2	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas1	PF01867.16	gi|384434715|ref|YP_005644073.1|	-	8.4e-51	172.8	1.0	1.4e-48	165.5	1.0	2.0	1	1	0	1	1	1	1	CRISPR	associated	protein	Cas1
Csa1	PF06023.12	gi|384434716|ref|YP_005644074.1|	-	9.3e-110	366.6	0.0	1.3e-109	366.1	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	exonuclease	Csa1
PDDEXK_1	PF12705.7	gi|384434716|ref|YP_005644074.1|	-	0.0056	16.6	0.0	0.0087	16.0	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
MBD	PF01429.19	gi|384434716|ref|YP_005644074.1|	-	0.14	11.9	0.0	0.3	10.8	0.0	1.6	1	0	0	1	1	1	0	Methyl-CpG	binding	domain
Toxin_26	PF08097.11	gi|384434716|ref|YP_005644074.1|	-	5.6	7.9	5.8	16	6.4	0.2	2.8	2	0	0	2	2	2	0	Conotoxin	T-superfamily
ELFV_dehydrog	PF00208.21	gi|384434717|ref|YP_005644075.1|	-	3.9e-64	216.7	3.0	7e-64	215.9	2.9	1.4	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|384434717|ref|YP_005644075.1|	-	2.7e-50	169.6	0.0	5.4e-50	168.6	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|384434717|ref|YP_005644075.1|	-	0.0018	17.7	0.3	0.0031	16.9	0.3	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|384434717|ref|YP_005644075.1|	-	0.11	12.6	1.4	0.28	11.2	0.8	1.8	1	1	1	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Bac_GDH	PF05088.12	gi|384434717|ref|YP_005644075.1|	-	0.13	9.7	0.0	0.18	9.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
DNA_pol_B	PF00136.21	gi|384434719|ref|YP_005644077.1|	-	8.1e-13	47.9	0.3	1.3e-11	43.9	0.3	2.5	1	1	0	1	1	1	1	DNA	polymerase	family	B
Penicil_amidase	PF01804.18	gi|384434721|ref|YP_005644079.1|	-	5.8e-145	484.9	0.0	7.1e-145	484.6	0.0	1.0	1	0	0	1	1	1	1	Penicillin	amidase
LptF_LptG	PF03739.14	gi|384434722|ref|YP_005644080.1|	-	0.31	9.9	13.3	0.067	12.0	10.1	1.5	1	1	0	1	1	1	0	Lipopolysaccharide	export	system	permease	LptF/LptG
AA_permease_2	PF13520.6	gi|384434723|ref|YP_005644081.1|	-	4e-34	118.2	57.6	5.7e-32	111.1	57.6	2.0	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384434723|ref|YP_005644081.1|	-	6.3e-30	104.2	43.3	6.3e-30	104.2	43.3	2.2	1	1	1	2	2	2	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|384434723|ref|YP_005644081.1|	-	1.4e-10	40.5	34.5	1.4e-10	40.5	34.5	2.2	1	1	1	2	2	2	1	Spore	germination	protein
AA_permease_C	PF13906.6	gi|384434723|ref|YP_005644081.1|	-	0.0029	17.7	0.7	0.0029	17.7	0.7	4.8	6	1	0	6	6	6	1	C-terminus	of	AA_permease
Peptidase_C15	PF01470.17	gi|384434725|ref|YP_005644083.1|	-	2.5e-49	168.2	0.0	2.9e-49	168.0	0.0	1.0	1	0	0	1	1	1	1	Pyroglutamyl	peptidase
DDE_Tnp_1	PF01609.21	gi|384434726|ref|YP_005644084.1|	-	7.9e-17	61.6	0.0	1e-16	61.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
4HBT	PF03061.22	gi|384434728|ref|YP_005644086.1|	-	2.8e-05	24.4	0.0	3.6e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
AAA_14	PF13173.6	gi|384434729|ref|YP_005644087.1|	-	8.7e-32	109.9	0.1	2.7e-31	108.3	0.1	1.8	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.6	gi|384434729|ref|YP_005644087.1|	-	2.2e-12	47.2	0.6	5.1e-12	46.0	0.6	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
DUF746	PF05344.11	gi|384434729|ref|YP_005644087.1|	-	0.0033	17.2	0.0	0.0069	16.2	0.0	1.6	1	0	0	1	1	1	1	Domain	of	Unknown	Function	(DUF746)
HTH_36	PF13730.6	gi|384434729|ref|YP_005644087.1|	-	0.0051	16.7	0.3	0.043	13.8	0.1	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|384434729|ref|YP_005644087.1|	-	0.0066	16.2	0.5	0.045	13.5	0.1	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384434729|ref|YP_005644087.1|	-	0.0096	16.0	0.1	0.023	14.8	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Terminase_5	PF06056.12	gi|384434729|ref|YP_005644087.1|	-	0.1	12.5	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
SLATT_5	PF18160.1	gi|384434730|ref|YP_005644088.1|	-	0.62	9.4	3.5	0.71	9.2	3.5	1.0	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	family	5
HD	PF01966.22	gi|384434731|ref|YP_005644089.1|	-	0.022	15.0	0.0	0.022	15.0	0.0	1.1	1	0	0	1	1	1	0	HD	domain
ATP-gua_PtransN	PF02807.15	gi|384434731|ref|YP_005644089.1|	-	0.098	13.1	0.0	0.13	12.7	0.0	1.2	1	0	0	1	1	1	0	ATP:guanido	phosphotransferase,	N-terminal	domain
Fib_alpha	PF08702.10	gi|384434732|ref|YP_005644090.1|	-	1.1e-08	35.3	19.7	0.001	19.3	4.9	3.4	1	1	2	3	3	3	3	Fibrinogen	alpha/beta	chain	family
Collagen_mid	PF15984.5	gi|384434732|ref|YP_005644090.1|	-	7.7e-08	32.3	2.1	2e-05	24.4	0.8	2.2	1	1	1	2	2	2	2	Bacterial	collagen,	middle	region
DUF16	PF01519.16	gi|384434732|ref|YP_005644090.1|	-	4.1e-07	30.4	32.4	0.0016	18.9	2.8	3.7	2	1	2	4	4	3	3	Protein	of	unknown	function	DUF16
SlyX	PF04102.12	gi|384434732|ref|YP_005644090.1|	-	9.5e-07	29.3	22.1	0.022	15.4	0.2	3.4	1	1	2	3	3	3	2	SlyX
Spc29	PF17082.5	gi|384434732|ref|YP_005644090.1|	-	1.1e-06	28.7	13.1	0.0062	16.4	1.6	3.1	1	1	2	3	3	3	3	Spindle	Pole	Component	29
LZ3wCH	PF18517.1	gi|384434732|ref|YP_005644090.1|	-	2.9e-06	27.3	3.0	0.44	10.7	0.1	3.6	3	0	0	3	3	3	2	Leucine	zipper	with	capping	helix	domain
DUF948	PF06103.11	gi|384434732|ref|YP_005644090.1|	-	5.5e-06	26.5	15.0	0.00086	19.5	7.4	2.7	1	1	2	3	3	3	3	Bacterial	protein	of	unknown	function	(DUF948)
ATG16	PF08614.11	gi|384434732|ref|YP_005644090.1|	-	1.4e-05	25.4	23.9	0.0048	17.1	9.9	2.3	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
Cast	PF10174.9	gi|384434732|ref|YP_005644090.1|	-	2.2e-05	22.9	11.9	2.9e-05	22.5	11.9	1.2	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
ALIX_LYPXL_bnd	PF13949.6	gi|384434732|ref|YP_005644090.1|	-	2.8e-05	23.6	17.4	4.6e-05	22.9	17.4	1.2	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
Helo_like_N	PF17111.5	gi|384434732|ref|YP_005644090.1|	-	4.5e-05	22.9	10.7	0.0097	15.3	4.6	2.4	1	1	1	2	2	2	2	Fungal	N-terminal	domain	of	STAND	proteins
BAR_3	PF16746.5	gi|384434732|ref|YP_005644090.1|	-	6.2e-05	22.8	14.5	0.0046	16.7	5.6	2.4	1	1	1	2	2	2	2	BAR	domain	of	APPL	family
MT0933_antitox	PF14013.6	gi|384434732|ref|YP_005644090.1|	-	6.3e-05	23.2	4.3	10	6.5	0.2	5.0	4	1	0	4	4	4	0	MT0933-like	antitoxin	protein
Fusion_gly	PF00523.18	gi|384434732|ref|YP_005644090.1|	-	7.4e-05	21.2	19.4	0.002	16.5	5.4	3.1	1	1	2	3	3	3	2	Fusion	glycoprotein	F0
PhageMin_Tail	PF10145.9	gi|384434732|ref|YP_005644090.1|	-	0.00017	21.5	6.0	0.00024	21.0	6.0	1.1	1	0	0	1	1	1	1	Phage-related	minor	tail	protein
DUF1664	PF07889.12	gi|384434732|ref|YP_005644090.1|	-	0.00019	21.5	17.3	0.0037	17.3	4.6	2.4	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
DUF3972	PF13118.6	gi|384434732|ref|YP_005644090.1|	-	0.00021	21.7	22.2	0.0088	16.5	3.9	3.8	2	1	0	3	3	2	1	Protein	of	unknown	function	(DUF3972)
AAA_13	PF13166.6	gi|384434732|ref|YP_005644090.1|	-	0.00033	19.5	19.9	0.00067	18.5	19.8	1.5	1	1	0	1	1	1	1	AAA	domain
TPR_14	PF13428.6	gi|384434732|ref|YP_005644090.1|	-	0.00037	21.1	1.2	18	6.5	0.0	4.4	2	1	2	4	4	3	0	Tetratricopeptide	repeat
DUF2383	PF09537.10	gi|384434732|ref|YP_005644090.1|	-	0.00048	20.4	13.3	0.32	11.4	3.5	3.8	1	1	3	4	4	4	1	Domain	of	unknown	function	(DUF2383)
BRE1	PF08647.11	gi|384434732|ref|YP_005644090.1|	-	0.00049	20.1	16.8	0.00049	20.1	16.8	2.7	1	1	1	2	2	2	2	BRE1	E3	ubiquitin	ligase
UPF0242	PF06785.11	gi|384434732|ref|YP_005644090.1|	-	0.00058	20.0	22.4	0.0019	18.3	22.4	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
LXG	PF04740.12	gi|384434732|ref|YP_005644090.1|	-	0.00058	19.6	19.2	0.0019	17.9	15.1	2.2	1	1	1	2	2	2	1	LXG	domain	of	WXG	superfamily
DUF4175	PF13779.6	gi|384434732|ref|YP_005644090.1|	-	0.00065	17.8	17.5	0.08	10.8	12.8	2.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4175)
HEAT_PBS	PF03130.16	gi|384434732|ref|YP_005644090.1|	-	0.0011	19.4	2.1	54	4.9	0.2	5.0	3	3	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
Exonuc_VII_L	PF02601.15	gi|384434732|ref|YP_005644090.1|	-	0.0013	18.4	9.6	0.0021	17.7	9.6	1.4	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
DUF812	PF05667.11	gi|384434732|ref|YP_005644090.1|	-	0.0013	17.8	18.3	0.002	17.1	18.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
V_ATPase_I	PF01496.19	gi|384434732|ref|YP_005644090.1|	-	0.0013	16.8	12.8	0.0014	16.6	12.8	1.1	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
DUF3782	PF12644.7	gi|384434732|ref|YP_005644090.1|	-	0.0014	18.8	14.4	0.029	14.5	0.6	4.2	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF3782)
HOOK	PF05622.12	gi|384434732|ref|YP_005644090.1|	-	0.0021	16.3	16.9	0.0028	15.9	16.9	1.2	1	0	0	1	1	1	1	HOOK	protein
BLOC1_2	PF10046.9	gi|384434732|ref|YP_005644090.1|	-	0.0023	18.2	19.6	0.037	14.3	10.5	2.6	1	1	1	2	2	2	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
MAD	PF05557.13	gi|384434732|ref|YP_005644090.1|	-	0.0025	16.3	17.5	0.0042	15.5	17.5	1.4	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
Lebercilin	PF15619.6	gi|384434732|ref|YP_005644090.1|	-	0.0028	17.4	21.5	0.0072	16.0	13.6	2.1	1	1	1	2	2	2	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
GAS	PF13851.6	gi|384434732|ref|YP_005644090.1|	-	0.0029	17.0	21.4	0.0058	16.0	21.4	1.5	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
TPR_1	PF00515.28	gi|384434732|ref|YP_005644090.1|	-	0.0032	17.2	8.0	35	4.4	0.0	6.2	4	3	4	8	8	5	0	Tetratricopeptide	repeat
TMF_DNA_bd	PF12329.8	gi|384434732|ref|YP_005644090.1|	-	0.0032	17.4	9.6	0.0032	17.4	9.6	3.4	2	1	2	4	4	3	2	TATA	element	modulatory	factor	1	DNA	binding
RsbU_N	PF08673.10	gi|384434732|ref|YP_005644090.1|	-	0.0035	17.4	6.5	5.7	7.1	0.3	3.5	1	1	2	3	3	3	0	Phosphoserine	phosphatase	RsbU,	N-terminal	domain
Vps53_N	PF04100.12	gi|384434732|ref|YP_005644090.1|	-	0.0035	16.4	17.6	0.054	12.4	17.1	2.1	1	1	1	2	2	2	2	Vps53-like,	N-terminal
DUF2347	PF09804.9	gi|384434732|ref|YP_005644090.1|	-	0.0036	16.9	2.6	0.0056	16.3	2.6	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2347)
Spc7	PF08317.11	gi|384434732|ref|YP_005644090.1|	-	0.0037	16.2	24.6	0.0072	15.2	24.6	1.6	1	1	0	1	1	1	1	Spc7	kinetochore	protein
IKKbetaNEMObind	PF12179.8	gi|384434732|ref|YP_005644090.1|	-	0.0045	17.0	14.5	12	6.1	0.3	5.8	1	1	4	5	5	5	0	I-kappa-kinase-beta	NEMO	binding	domain
Filament	PF00038.21	gi|384434732|ref|YP_005644090.1|	-	0.0046	16.6	20.4	0.37	10.3	2.2	2.3	1	1	1	2	2	2	2	Intermediate	filament	protein
DUF4407	PF14362.6	gi|384434732|ref|YP_005644090.1|	-	0.0051	16.2	15.9	0.0079	15.6	15.9	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
HBM	PF16591.5	gi|384434732|ref|YP_005644090.1|	-	0.0054	16.2	18.4	0.14	11.6	11.5	2.6	1	1	1	2	2	2	2	Helical	bimodular	sensor	domain
PDDEXK_10	PF07788.11	gi|384434732|ref|YP_005644090.1|	-	0.0061	16.5	1.9	0.014	15.3	1.9	1.7	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Atg14	PF10186.9	gi|384434732|ref|YP_005644090.1|	-	0.0064	15.6	10.6	0.0064	15.6	10.6	2.2	1	1	1	2	2	2	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DASH_Dam1	PF08653.10	gi|384434732|ref|YP_005644090.1|	-	0.0085	15.9	4.7	4.4	7.2	0.1	3.9	1	1	4	5	5	4	0	DASH	complex	subunit	Dam1
TPR_8	PF13181.6	gi|384434732|ref|YP_005644090.1|	-	0.0087	16.2	8.7	40	4.8	0.0	6.0	4	3	3	7	7	4	0	Tetratricopeptide	repeat
T3SSipB	PF16535.5	gi|384434732|ref|YP_005644090.1|	-	0.011	16.2	13.7	0.021	15.3	13.7	1.5	1	0	0	1	1	1	0	Type	III	cell	invasion	protein	SipB
TPR_11	PF13414.6	gi|384434732|ref|YP_005644090.1|	-	0.013	15.1	15.5	7.9	6.3	0.0	6.2	4	3	3	7	7	4	0	TPR	repeat
ANAPC5	PF12862.7	gi|384434732|ref|YP_005644090.1|	-	0.017	15.2	7.8	18	5.5	0.3	4.4	1	1	4	5	5	5	0	Anaphase-promoting	complex	subunit	5
Taxilin	PF09728.9	gi|384434732|ref|YP_005644090.1|	-	0.019	14.1	19.6	0.089	11.9	19.6	1.7	1	1	0	1	1	1	0	Myosin-like	coiled-coil	protein
Lambda_tail_I	PF06805.12	gi|384434732|ref|YP_005644090.1|	-	0.021	15.2	0.3	16	5.9	0.2	3.2	1	1	1	2	2	2	0	Bacteriophage	lambda	tail	assembly	protein	I
DUF641	PF04859.12	gi|384434732|ref|YP_005644090.1|	-	0.021	15.2	18.2	0.15	12.4	9.3	2.5	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
FliJ	PF02050.16	gi|384434732|ref|YP_005644090.1|	-	0.021	15.0	25.4	1.3	9.2	16.6	2.8	1	1	1	2	2	2	0	Flagellar	FliJ	protein
Laminin_II	PF06009.12	gi|384434732|ref|YP_005644090.1|	-	0.022	14.8	19.0	0.045	13.8	4.6	2.4	1	1	1	2	2	2	0	Laminin	Domain	II
FLYWCH_u	PF16662.5	gi|384434732|ref|YP_005644090.1|	-	0.023	14.8	8.4	4.5	7.4	0.4	3.5	1	1	2	3	3	3	0	FLYWCH-type	zinc	finger-containing	protein	1
Baculo_PEP_C	PF04513.12	gi|384434732|ref|YP_005644090.1|	-	0.026	14.6	16.5	0.4	10.7	7.9	2.4	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
TPR_MLP1_2	PF07926.12	gi|384434732|ref|YP_005644090.1|	-	0.027	14.6	27.5	0.084	12.9	27.5	1.8	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
MCPsignal	PF00015.21	gi|384434732|ref|YP_005644090.1|	-	0.027	14.3	17.6	0.31	10.8	10.2	2.3	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF2959	PF11172.8	gi|384434732|ref|YP_005644090.1|	-	0.027	14.6	12.9	0.34	11.0	0.6	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2959)
DUF3584	PF12128.8	gi|384434732|ref|YP_005644090.1|	-	0.028	12.0	17.7	0.035	11.6	17.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
TMP_2	PF06791.13	gi|384434732|ref|YP_005644090.1|	-	0.03	14.0	13.9	0.025	14.3	8.8	2.1	1	1	1	2	2	2	0	Prophage	tail	length	tape	measure	protein
DUF4988	PF16378.5	gi|384434732|ref|YP_005644090.1|	-	0.034	13.8	10.7	1.9	8.1	0.8	3.2	1	1	1	3	3	3	0	Domain	of	unknown	function
ING	PF12998.7	gi|384434732|ref|YP_005644090.1|	-	0.035	14.7	10.9	0.072	13.7	9.5	2.2	1	1	1	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
DHR10	PF18595.1	gi|384434732|ref|YP_005644090.1|	-	0.035	14.2	23.9	0.066	13.3	23.9	1.5	1	0	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
Bacillus_HBL	PF05791.11	gi|384434732|ref|YP_005644090.1|	-	0.042	13.7	18.9	0.3	10.9	14.1	2.4	1	1	2	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
CorA	PF01544.18	gi|384434732|ref|YP_005644090.1|	-	0.042	13.1	6.4	0.074	12.4	6.4	1.5	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
SpecificRecomb	PF10136.9	gi|384434732|ref|YP_005644090.1|	-	0.043	12.1	7.5	0.054	11.8	7.5	1.2	1	0	0	1	1	1	0	Site-specific	recombinase
GAT	PF03127.14	gi|384434732|ref|YP_005644090.1|	-	0.044	14.1	11.2	0.16	12.3	2.9	2.6	1	1	1	2	2	2	0	GAT	domain
DUF2201_N	PF13203.6	gi|384434732|ref|YP_005644090.1|	-	0.044	13.4	8.2	0.33	10.5	8.2	2.0	1	1	0	1	1	1	0	Putative	metallopeptidase	domain
BCDHK_Adom3	PF10436.9	gi|384434732|ref|YP_005644090.1|	-	0.044	13.6	10.8	0.76	9.6	2.3	2.7	1	1	2	3	3	3	0	Mitochondrial	branched-chain	alpha-ketoacid	dehydrogenase	kinase
Seryl_tRNA_N	PF02403.22	gi|384434732|ref|YP_005644090.1|	-	0.046	13.9	22.1	0.78	10.0	6.5	2.7	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
FlgN	PF05130.12	gi|384434732|ref|YP_005644090.1|	-	0.047	14.2	23.4	0.09	13.3	22.5	1.8	1	1	0	1	1	1	0	FlgN	protein
GCP_N_terminal	PF17681.1	gi|384434732|ref|YP_005644090.1|	-	0.05	13.2	6.4	0.072	12.7	6.4	1.2	1	0	0	1	1	1	0	Gamma	tubulin	complex	component	N-terminal
HicB_lk_antitox	PF15919.5	gi|384434732|ref|YP_005644090.1|	-	0.054	13.6	7.3	2.9	8.0	0.7	3.5	1	1	2	3	3	3	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
DUF4618	PF15397.6	gi|384434732|ref|YP_005644090.1|	-	0.056	12.8	20.2	0.65	9.4	6.3	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
DUF848	PF05852.11	gi|384434732|ref|YP_005644090.1|	-	0.06	13.5	16.1	0.44	10.7	2.1	2.5	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
APG17	PF04108.12	gi|384434732|ref|YP_005644090.1|	-	0.062	12.4	17.3	1.1	8.2	5.9	2.1	1	1	1	2	2	2	0	Autophagy	protein	Apg17
Serine_rich	PF08824.10	gi|384434732|ref|YP_005644090.1|	-	0.069	13.1	10.4	0.17	11.9	10.3	1.7	1	1	1	2	2	2	0	Serine	rich	protein	interaction	domain
Golgin_A5	PF09787.9	gi|384434732|ref|YP_005644090.1|	-	0.074	12.5	18.0	0.12	11.9	18.0	1.3	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
DUF5344	PF17279.2	gi|384434732|ref|YP_005644090.1|	-	0.078	13.6	20.8	0.19	12.3	11.6	2.6	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5344)
Prominin	PF05478.11	gi|384434732|ref|YP_005644090.1|	-	0.079	10.9	15.5	0.17	9.8	15.5	1.5	1	1	0	1	1	1	0	Prominin
GCN5L1	PF06320.13	gi|384434732|ref|YP_005644090.1|	-	0.083	13.0	17.6	0.25	11.5	15.5	2.5	1	1	2	3	3	3	0	GCN5-like	protein	1	(GCN5L1)
EcoEI_R_C	PF08463.10	gi|384434732|ref|YP_005644090.1|	-	0.087	12.9	11.2	0.085	13.0	2.3	2.7	1	1	1	2	2	2	0	EcoEI	R	protein	C-terminal
Methyltransf_23	PF13489.6	gi|384434732|ref|YP_005644090.1|	-	0.092	12.6	0.0	25	4.7	0.0	3.4	1	1	2	3	3	3	0	Methyltransferase	domain
YkyA	PF10368.9	gi|384434732|ref|YP_005644090.1|	-	0.099	12.3	21.3	0.55	9.9	18.2	2.6	1	1	1	2	2	2	0	Putative	cell-wall	binding	lipoprotein
Fez1	PF06818.15	gi|384434732|ref|YP_005644090.1|	-	0.1	13.0	19.7	0.04	14.4	10.5	2.2	1	1	1	2	2	2	0	Fez1
DUF2203	PF09969.9	gi|384434732|ref|YP_005644090.1|	-	0.11	13.2	15.8	0.11	13.2	4.7	2.5	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
OmpH	PF03938.14	gi|384434732|ref|YP_005644090.1|	-	0.11	12.8	27.6	6.7	7.1	27.6	2.6	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
TMPIT	PF07851.13	gi|384434732|ref|YP_005644090.1|	-	0.12	11.6	19.5	0.49	9.6	2.5	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
Syntaxin-6_N	PF09177.11	gi|384434732|ref|YP_005644090.1|	-	0.14	12.8	14.5	1.9	9.1	11.8	2.4	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
MIP-T3_C	PF17749.1	gi|384434732|ref|YP_005644090.1|	-	0.14	12.1	15.6	0.26	11.2	15.6	1.4	1	0	0	1	1	1	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
HMMR_N	PF15905.5	gi|384434732|ref|YP_005644090.1|	-	0.14	11.6	28.8	0.016	14.7	23.1	2.2	2	1	0	2	2	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
COG5	PF10392.9	gi|384434732|ref|YP_005644090.1|	-	0.15	12.3	13.8	0.92	9.7	10.2	2.4	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
HAUS-augmin3	PF14932.6	gi|384434732|ref|YP_005644090.1|	-	0.15	11.6	21.9	0.068	12.7	13.6	2.0	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
Tcf25	PF04910.14	gi|384434732|ref|YP_005644090.1|	-	0.17	10.9	3.2	0.26	10.3	3.2	1.4	1	0	0	1	1	1	0	Transcriptional	repressor	TCF25
HTH_Tnp_Mu_2	PF09039.11	gi|384434732|ref|YP_005644090.1|	-	0.17	11.9	3.5	15	5.7	0.3	3.0	1	1	2	3	3	3	0	Mu	DNA	binding,	I	gamma	subdomain
FmiP_Thoc5	PF09766.9	gi|384434732|ref|YP_005644090.1|	-	0.17	11.1	19.3	1	8.6	4.0	2.3	1	1	1	2	2	2	0	Fms-interacting	protein/Thoc5
ECM11	PF15463.6	gi|384434732|ref|YP_005644090.1|	-	0.19	12.3	11.2	1.6	9.3	3.3	2.7	1	1	1	2	2	2	0	Extracellular	mutant	protein	11
CREPT	PF16566.5	gi|384434732|ref|YP_005644090.1|	-	0.19	11.9	17.4	0.22	11.7	11.0	2.3	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
DUF1804	PF08822.11	gi|384434732|ref|YP_005644090.1|	-	0.2	11.7	8.8	0.33	10.9	3.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1804)
DUF1296	PF06972.11	gi|384434732|ref|YP_005644090.1|	-	0.2	11.8	12.6	5.4	7.2	0.3	5.1	2	1	4	6	6	5	0	Protein	of	unknown	function	(DUF1296)
ZYG-11_interact	PF05884.12	gi|384434732|ref|YP_005644090.1|	-	0.21	11.0	5.7	0.34	10.3	5.7	1.5	1	0	0	1	1	1	0	Interactor	of	ZYG-11
ADIP	PF11559.8	gi|384434732|ref|YP_005644090.1|	-	0.21	11.7	24.0	0.54	10.3	21.6	2.2	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Spectrin	PF00435.21	gi|384434732|ref|YP_005644090.1|	-	0.22	12.0	20.3	3	8.4	3.0	2.6	1	1	2	3	3	3	0	Spectrin	repeat
MitMem_reg	PF13012.6	gi|384434732|ref|YP_005644090.1|	-	0.23	11.9	12.0	1.2e+02	3.1	11.9	3.0	1	1	0	1	1	1	0	Maintenance	of	mitochondrial	structure	and	function
Nup88	PF10168.9	gi|384434732|ref|YP_005644090.1|	-	0.25	9.1	14.5	0.34	8.7	14.5	1.1	1	0	0	1	1	1	0	Nuclear	pore	component
YscO	PF07321.12	gi|384434732|ref|YP_005644090.1|	-	0.26	11.2	26.4	0.63	10.0	6.5	2.2	1	1	1	2	2	2	0	Type	III	secretion	protein	YscO
IFT57	PF10498.9	gi|384434732|ref|YP_005644090.1|	-	0.27	10.1	19.9	0.69	8.8	19.9	1.6	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
KH_5	PF13184.6	gi|384434732|ref|YP_005644090.1|	-	0.3	11.2	9.6	26	5.0	0.0	4.7	3	1	1	5	5	4	0	NusA-like	KH	domain
FUSC	PF04632.12	gi|384434732|ref|YP_005644090.1|	-	0.31	9.5	4.2	0.41	9.1	4.2	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
CPG4	PF15481.6	gi|384434732|ref|YP_005644090.1|	-	0.31	11.7	3.1	1.6	9.4	0.6	2.2	1	1	1	2	2	2	0	Chondroitin	proteoglycan	4
DUF4795	PF16043.5	gi|384434732|ref|YP_005644090.1|	-	0.33	10.5	21.8	0.9	9.1	21.8	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
Retrotrans_gag	PF03732.17	gi|384434732|ref|YP_005644090.1|	-	0.37	11.1	7.3	4	7.8	1.2	2.7	1	1	1	2	2	2	0	Retrotransposon	gag	protein
YabA	PF06156.13	gi|384434732|ref|YP_005644090.1|	-	0.39	11.4	15.1	2.8	8.6	0.5	2.9	1	1	1	2	2	2	0	Initiation	control	protein	YabA
LMBR1	PF04791.16	gi|384434732|ref|YP_005644090.1|	-	0.39	9.6	7.7	0.5	9.2	7.7	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
SKA1	PF07160.12	gi|384434732|ref|YP_005644090.1|	-	0.41	10.5	18.6	0.96	9.2	16.8	2.1	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
FlaF	PF07309.11	gi|384434732|ref|YP_005644090.1|	-	0.43	10.6	10.8	3.6	7.6	2.3	3.3	1	1	2	3	3	3	0	Flagellar	protein	FlaF
TEX13	PF15186.6	gi|384434732|ref|YP_005644090.1|	-	0.45	10.2	19.8	3.9	7.1	1.2	3.2	1	1	3	4	4	4	0	Testis-expressed	sequence	13	protein	family
TMEM192	PF14802.6	gi|384434732|ref|YP_005644090.1|	-	0.46	9.5	18.5	0.36	9.9	0.6	3.1	1	1	2	3	3	3	0	TMEM192	family
DUF4763	PF15960.5	gi|384434732|ref|YP_005644090.1|	-	0.46	9.8	19.7	1	8.6	6.5	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4763)
NPV_P10	PF05531.12	gi|384434732|ref|YP_005644090.1|	-	0.47	10.9	19.9	1.3e+02	3.2	0.1	3.6	1	1	1	2	2	1	0	Nucleopolyhedrovirus	P10	protein
Sec8_exocyst	PF04048.14	gi|384434732|ref|YP_005644090.1|	-	0.48	10.3	16.1	1.3	8.9	9.6	2.6	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Mod_r	PF07200.13	gi|384434732|ref|YP_005644090.1|	-	0.48	10.5	23.0	3.8	7.6	23.0	2.1	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
HrpB7	PF09486.10	gi|384434732|ref|YP_005644090.1|	-	0.48	10.8	17.9	3.5	8.0	17.5	2.0	1	1	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
RmuC	PF02646.16	gi|384434732|ref|YP_005644090.1|	-	0.48	9.5	18.9	0.41	9.7	10.9	2.3	1	1	1	2	2	2	0	RmuC	family
Clusterin	PF01093.17	gi|384434732|ref|YP_005644090.1|	-	0.49	9.4	14.6	0.2	10.7	7.8	2.3	1	1	2	3	3	3	0	Clusterin
DUF745	PF05335.13	gi|384434732|ref|YP_005644090.1|	-	0.53	10.0	24.5	0.39	10.4	19.7	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF745)
PXA	PF02194.15	gi|384434732|ref|YP_005644090.1|	-	0.53	10.2	7.0	1.4	8.8	7.0	1.8	1	1	0	1	1	1	0	PXA	domain
WXG100	PF06013.12	gi|384434732|ref|YP_005644090.1|	-	0.58	10.4	16.5	2.3	8.5	10.3	2.8	1	1	1	2	2	2	0	Proteins	of	100	residues	with	WXG
FAA_hydro_N_2	PF18288.1	gi|384434732|ref|YP_005644090.1|	-	0.61	10.5	8.0	5	7.6	1.8	2.7	1	1	2	3	3	3	0	Fumarylacetoacetase	N-terminal	domain	2
SYCE1	PF15233.6	gi|384434732|ref|YP_005644090.1|	-	0.64	10.1	25.1	0.038	14.1	19.7	1.8	2	0	0	2	2	1	0	Synaptonemal	complex	central	element	protein	1
COMP	PF11598.8	gi|384434732|ref|YP_005644090.1|	-	0.65	10.5	8.9	19	5.9	0.3	3.6	1	1	2	3	3	3	0	Cartilage	oligomeric	matrix	protein
BORCS8	PF10167.9	gi|384434732|ref|YP_005644090.1|	-	0.75	9.7	11.6	4.5	7.2	1.9	2.5	1	1	1	2	2	2	0	BLOC-1-related	complex	sub-unit	8
DUF4200	PF13863.6	gi|384434732|ref|YP_005644090.1|	-	0.76	10.2	21.9	2.7	8.4	10.4	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
Jnk-SapK_ap_N	PF09744.9	gi|384434732|ref|YP_005644090.1|	-	0.77	10.0	21.9	1.1	9.4	10.9	2.3	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
DUF2379	PF09543.10	gi|384434732|ref|YP_005644090.1|	-	0.78	9.9	8.0	2	8.7	7.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2379)
H-kinase_dim	PF02895.14	gi|384434732|ref|YP_005644090.1|	-	0.79	10.2	19.0	7.4	7.0	4.1	4.4	1	1	1	2	2	2	0	Signal	transducing	histidine	kinase,	homodimeric	domain
CC2-LZ	PF16516.5	gi|384434732|ref|YP_005644090.1|	-	0.83	10.1	17.9	5.9	7.3	5.4	3.0	1	1	1	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
CAP_N	PF01213.19	gi|384434732|ref|YP_005644090.1|	-	0.86	9.0	12.1	1.3	8.5	12.1	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
APG6_N	PF17675.1	gi|384434732|ref|YP_005644090.1|	-	0.99	9.9	22.1	0.46	11.0	14.7	2.3	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Perilipin	PF03036.16	gi|384434732|ref|YP_005644090.1|	-	1.1	8.2	19.8	2.3	7.1	19.9	1.5	1	1	0	1	1	1	0	Perilipin	family
Phycobilisome	PF00502.19	gi|384434732|ref|YP_005644090.1|	-	1.1	9.1	10.9	3.4	7.6	3.5	2.4	1	1	1	2	2	2	0	Phycobilisome	protein
ZapD	PF07072.11	gi|384434732|ref|YP_005644090.1|	-	1.2	8.9	15.5	0.86	9.3	5.1	2.3	1	1	1	2	2	2	0	Cell	division	protein
T3SS_needle_F	PF09392.10	gi|384434732|ref|YP_005644090.1|	-	1.2	9.4	13.4	6	7.1	1.0	3.5	1	1	2	3	3	3	0	Type	III	secretion	needle	MxiH,	YscF,	SsaG,	EprI,	PscF,	EscF
Macoilin	PF09726.9	gi|384434732|ref|YP_005644090.1|	-	1.2	7.6	18.4	1.8	7.1	18.4	1.2	1	0	0	1	1	1	0	Macoilin	family
Pinin_SDK_N	PF04697.13	gi|384434732|ref|YP_005644090.1|	-	1.2	9.7	8.2	25	5.5	0.2	3.4	3	0	0	3	3	3	0	pinin/SDK	conserved	region
ANAPC3	PF12895.7	gi|384434732|ref|YP_005644090.1|	-	1.3	9.2	4.7	14	6.0	0.2	3.1	1	1	1	3	3	3	0	Anaphase-promoting	complex,	cyclosome,	subunit	3
Tweety	PF04906.13	gi|384434732|ref|YP_005644090.1|	-	1.4	7.5	11.7	3.6	6.1	11.8	1.7	1	1	0	1	1	1	0	Tweety
Noelin-1	PF12308.8	gi|384434732|ref|YP_005644090.1|	-	1.4	8.9	10.5	3.1	7.9	2.6	2.6	1	1	2	3	3	3	0	Neurogenesis	glycoprotein
DASH_Spc34	PF08657.10	gi|384434732|ref|YP_005644090.1|	-	1.5	8.6	18.5	73	3.0	18.5	2.2	1	1	0	1	1	1	0	DASH	complex	subunit	Spc34
GCS2	PF04107.13	gi|384434732|ref|YP_005644090.1|	-	1.5	8.1	6.3	4.7	6.5	0.2	2.7	1	1	1	2	2	2	0	Glutamate-cysteine	ligase	family	2(GCS2)
HemX	PF04375.14	gi|384434732|ref|YP_005644090.1|	-	1.5	8.0	27.3	3	7.0	16.4	2.1	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DivIC	PF04977.15	gi|384434732|ref|YP_005644090.1|	-	1.6	8.5	26.5	3.8	7.4	4.5	3.9	1	1	2	3	3	3	0	Septum	formation	initiator
Sec20	PF03908.13	gi|384434732|ref|YP_005644090.1|	-	1.6	8.7	14.9	11	6.0	1.7	3.3	1	1	3	4	4	4	0	Sec20
KELK	PF15796.5	gi|384434732|ref|YP_005644090.1|	-	1.7	9.2	19.0	5.1	7.6	6.9	2.7	1	1	1	2	2	2	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
DUF3958	PF13125.6	gi|384434732|ref|YP_005644090.1|	-	1.7	8.9	20.7	0.082	13.1	5.5	2.9	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF3958)
DUF1759	PF03564.15	gi|384434732|ref|YP_005644090.1|	-	1.7	8.6	10.5	0.93	9.4	3.0	2.8	2	1	2	4	4	3	0	Protein	of	unknown	function	(DUF1759)
ERM	PF00769.19	gi|384434732|ref|YP_005644090.1|	-	1.7	8.4	23.4	2.8	7.7	23.3	1.6	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
zf-C4H2	PF10146.9	gi|384434732|ref|YP_005644090.1|	-	1.8	8.8	14.8	3.4	7.9	14.1	1.7	1	1	0	1	1	1	0	Zinc	finger-containing	protein
DUF2400	PF09674.10	gi|384434732|ref|YP_005644090.1|	-	1.9	8.4	8.0	4.5	7.2	2.6	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2400)
TPR_2	PF07719.17	gi|384434732|ref|YP_005644090.1|	-	2	8.7	12.6	1.2e+02	3.2	0.1	6.0	4	3	3	7	7	4	0	Tetratricopeptide	repeat
Glutaredoxin2_C	PF04399.13	gi|384434732|ref|YP_005644090.1|	-	2	8.2	9.3	4.6	7.1	2.0	2.8	1	1	2	3	3	3	0	Glutaredoxin	2,	C	terminal	domain
CENP-Q	PF13094.6	gi|384434732|ref|YP_005644090.1|	-	2.1	8.5	20.7	4.3	7.5	7.9	2.4	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Hrs_helical	PF12210.8	gi|384434732|ref|YP_005644090.1|	-	2.2	8.9	13.4	3.2	8.4	0.5	3.2	1	1	1	2	2	2	0	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
AATF-Che1	PF13339.6	gi|384434732|ref|YP_005644090.1|	-	2.3	8.9	15.1	1.5e+02	3.0	15.2	2.6	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
Prefoldin	PF02996.17	gi|384434732|ref|YP_005644090.1|	-	2.3	8.1	22.0	3.6	7.5	5.0	3.3	1	1	4	5	5	5	0	Prefoldin	subunit
P4Ha_N	PF08336.11	gi|384434732|ref|YP_005644090.1|	-	2.6	8.1	13.0	29	4.7	5.6	3.0	1	1	1	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
USP8_interact	PF08941.10	gi|384434732|ref|YP_005644090.1|	-	2.6	7.8	15.3	5.2	6.8	12.0	2.3	1	1	1	2	2	2	0	USP8	interacting
T2SSF	PF00482.23	gi|384434732|ref|YP_005644090.1|	-	2.7	8.0	6.3	3.9	7.4	1.4	2.2	1	1	2	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
CENP-K	PF11802.8	gi|384434732|ref|YP_005644090.1|	-	3	7.4	19.9	7.9	6.0	19.9	1.7	1	1	0	1	1	1	0	Centromere-associated	protein	K
Sec34	PF04136.15	gi|384434732|ref|YP_005644090.1|	-	3.1	7.7	16.2	7.6	6.4	11.2	2.4	1	1	1	2	2	2	0	Sec34-like	family
HAUS6_N	PF14661.6	gi|384434732|ref|YP_005644090.1|	-	3.1	7.3	17.5	15	5.1	17.4	2.0	1	1	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
ATG_C	PF09333.11	gi|384434732|ref|YP_005644090.1|	-	3.1	8.2	10.1	3.1	8.2	1.6	3.0	1	1	2	3	3	3	0	Autophagy-related	protein	C	terminal	domain
Corona_S2	PF01601.16	gi|384434732|ref|YP_005644090.1|	-	3.2	6.1	14.0	3.5	6.0	8.4	2.1	1	1	1	2	2	2	0	Coronavirus	S2	glycoprotein
ZapB	PF06005.12	gi|384434732|ref|YP_005644090.1|	-	3.3	8.2	25.8	5.2	7.6	5.4	3.3	1	1	2	3	3	3	0	Cell	division	protein	ZapB
T7SS_ESX_EspC	PF10824.8	gi|384434732|ref|YP_005644090.1|	-	3.6	8.1	10.8	21	5.7	6.8	2.6	1	1	2	3	3	3	0	Excreted	virulence	factor	EspC,	type	VII	ESX	diderm
Csm1_N	PF18504.1	gi|384434732|ref|YP_005644090.1|	-	4.1	7.8	24.7	5.7	7.4	6.5	3.7	1	1	3	4	4	4	0	Csm1	N-terminal	domain
MMPL	PF03176.15	gi|384434732|ref|YP_005644090.1|	-	4.2	6.2	7.9	11	4.8	8.0	1.7	1	1	0	1	1	1	0	MMPL	family
FlaC_arch	PF05377.11	gi|384434732|ref|YP_005644090.1|	-	4.4	7.8	14.5	13	6.2	0.7	3.9	1	1	2	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
LETM1	PF07766.13	gi|384434732|ref|YP_005644090.1|	-	4.4	6.6	13.9	8.8	5.6	7.1	2.3	1	1	1	2	2	2	0	LETM1-like	protein
RPA_interact_C	PF14768.6	gi|384434732|ref|YP_005644090.1|	-	4.5	7.9	6.6	31	5.2	0.3	3.0	1	1	2	3	3	2	0	Replication	protein	A	interacting	C-terminal
CRIC_ras_sig	PF10534.9	gi|384434732|ref|YP_005644090.1|	-	4.8	7.4	11.1	2.4	8.4	1.4	3.0	1	1	1	2	2	2	0	Connector	enhancer	of	kinase	suppressor	of	ras
FAM76	PF16046.5	gi|384434732|ref|YP_005644090.1|	-	5.6	6.2	13.5	11	5.3	13.5	1.5	1	0	0	1	1	1	0	FAM76	protein
Fzo_mitofusin	PF04799.13	gi|384434732|ref|YP_005644090.1|	-	5.8	6.5	17.0	1.6	8.2	4.3	2.5	1	1	1	2	2	2	0	fzo-like	conserved	region
Phage_GPO	PF05929.11	gi|384434732|ref|YP_005644090.1|	-	6.1	6.4	19.0	8.7	5.9	10.6	2.1	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
Sulfatase_C	PF14707.6	gi|384434732|ref|YP_005644090.1|	-	6.5	7.5	10.4	2.1e+03	-0.6	10.4	3.0	1	1	0	1	1	0	0	C-terminal	region	of	aryl-sulfatase
Tropomyosin_1	PF12718.7	gi|384434732|ref|YP_005644090.1|	-	7	6.8	22.9	4.7e+02	0.9	23.1	2.6	1	1	0	1	1	1	0	Tropomyosin	like
Troponin	PF00992.20	gi|384434732|ref|YP_005644090.1|	-	7.1	6.9	26.6	8.4	6.7	18.7	2.7	2	1	0	2	2	1	0	Troponin
FANCI_S2	PF14676.6	gi|384434732|ref|YP_005644090.1|	-	8.4	6.7	12.8	1.6	9.0	0.6	2.7	2	1	1	3	3	2	0	FANCI	solenoid	2
AI-2E_transport	PF01594.16	gi|384434732|ref|YP_005644090.1|	-	8.5	5.4	5.6	8	5.5	3.9	1.7	1	1	2	3	3	3	0	AI-2E	family	transporter
Spike_torovirin	PF17072.5	gi|384434732|ref|YP_005644090.1|	-	8.9	3.3	5.5	11	3.0	5.5	1.0	1	0	0	1	1	1	0	Torovirinae	spike	glycoprotein
DUF2570	PF10828.8	gi|384434732|ref|YP_005644090.1|	-	9.8	6.0	25.5	12	5.7	10.3	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2570)
HEPN	PF05168.14	gi|384434733|ref|YP_005644091.1|	-	1.7e-20	73.3	1.4	2e-20	73.1	1.4	1.0	1	0	0	1	1	1	1	HEPN	domain
NTP_transf_2	PF01909.23	gi|384434734|ref|YP_005644092.1|	-	9.8e-13	48.2	2.8	1.7e-12	47.5	2.8	1.6	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384434734|ref|YP_005644092.1|	-	2.1e-10	40.5	3.1	4.3e-10	39.5	2.3	1.9	1	1	1	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|384434734|ref|YP_005644092.1|	-	0.0012	18.6	0.0	0.017	14.9	0.0	2.0	2	0	0	2	2	2	1	Putative	nucleotidyltransferase	DUF294
DNA_pol_B_palm	PF14792.6	gi|384434734|ref|YP_005644092.1|	-	0.0079	16.4	0.2	0.023	14.9	0.0	1.7	2	0	0	2	2	2	1	DNA	polymerase	beta	palm
IreB	PF06135.12	gi|384434734|ref|YP_005644092.1|	-	0.059	13.6	1.0	0.38	11.0	0.0	2.4	3	0	0	3	3	3	0	IreB	regulatory	phosphoprotein
DDE_Tnp_1	PF01609.21	gi|384434735|ref|YP_005644093.1|	-	7.9e-17	61.6	0.0	1e-16	61.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Y1_Tnp	PF01797.16	gi|384434738|ref|YP_005644096.1|	-	4.2e-39	133.4	0.1	4.8e-39	133.2	0.1	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
OrfB_IS605	PF01385.19	gi|384434739|ref|YP_005644097.1|	-	4e-37	127.1	0.5	7.3e-37	126.3	0.5	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|384434739|ref|YP_005644097.1|	-	1e-20	73.4	0.4	2.3e-20	72.3	0.0	1.8	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
RuvX	PF03652.15	gi|384434739|ref|YP_005644097.1|	-	5.2e-07	30.1	0.0	1.1e-06	29.1	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	resolvase
DDE_Tnp_1	PF01609.21	gi|384434740|ref|YP_005644098.1|	-	0.014	15.0	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
DUF772	PF05598.11	gi|384434741|ref|YP_005644099.1|	-	7.9e-10	38.6	0.0	1.2e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DUF772	PF05598.11	gi|384434742|ref|YP_005644100.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434742|ref|YP_005644100.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
PMSR	PF01625.21	gi|384434743|ref|YP_005644101.1|	-	1.6e-36	125.8	0.1	1.9e-36	125.5	0.1	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Apolipoprotein	PF01442.18	gi|384434745|ref|YP_005644103.1|	-	1.8e-09	37.8	6.4	7e-07	29.3	2.0	2.7	2	1	1	3	3	3	2	Apolipoprotein	A1/A4/E	domain
Spectrin	PF00435.21	gi|384434745|ref|YP_005644103.1|	-	0.00055	20.4	2.9	0.93	10.0	0.4	3.5	1	1	3	4	4	4	1	Spectrin	repeat
DUF883	PF05957.13	gi|384434745|ref|YP_005644103.1|	-	0.0056	17.3	5.1	11	6.8	0.0	3.7	1	1	3	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
YtxH	PF12732.7	gi|384434745|ref|YP_005644103.1|	-	0.013	16.0	22.0	3.8	8.1	2.2	4.8	1	1	2	3	3	3	0	YtxH-like	protein
HLH	PF00010.26	gi|384434745|ref|YP_005644103.1|	-	0.017	15.0	2.5	0.4	10.7	0.0	3.7	4	1	1	5	5	5	0	Helix-loop-helix	DNA-binding	domain
Baculo_PEP_C	PF04513.12	gi|384434745|ref|YP_005644103.1|	-	0.022	14.8	0.3	0.65	10.0	0.0	2.8	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Fzo_mitofusin	PF04799.13	gi|384434745|ref|YP_005644103.1|	-	0.058	12.9	3.2	0.37	10.3	0.0	2.8	1	1	1	3	3	3	0	fzo-like	conserved	region
ApoO	PF09769.9	gi|384434745|ref|YP_005644103.1|	-	0.09	12.7	3.7	8.2	6.4	0.7	3.2	1	1	2	3	3	3	0	Apolipoprotein	O
YlqD	PF11068.8	gi|384434745|ref|YP_005644103.1|	-	0.093	13.1	5.9	0.092	13.1	0.6	2.4	1	1	1	2	2	2	0	YlqD	protein
KxDL	PF10241.9	gi|384434745|ref|YP_005644103.1|	-	0.094	13.0	10.9	1.1	9.5	1.0	4.3	1	1	3	4	4	4	0	Uncharacterized	conserved	protein
Fib_alpha	PF08702.10	gi|384434745|ref|YP_005644103.1|	-	0.14	12.3	12.6	0.95	9.6	5.5	2.7	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
HiaBD2	PF15403.6	gi|384434745|ref|YP_005644103.1|	-	0.27	11.7	7.0	5.8	7.4	0.4	3.9	4	1	1	5	5	5	0	HiaBD2_N	domain	of	Trimeric	autotransporter	adhesin	(GIN)
DUF4164	PF13747.6	gi|384434745|ref|YP_005644103.1|	-	0.28	11.5	6.1	2	8.7	0.9	3.2	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4164)
HIP1_clath_bdg	PF16515.5	gi|384434745|ref|YP_005644103.1|	-	0.3	11.7	12.4	1.9	9.2	2.7	3.8	1	1	3	5	5	5	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
NYD-SP28	PF14772.6	gi|384434745|ref|YP_005644103.1|	-	0.67	10.0	12.2	0.13	12.3	1.9	3.5	1	1	1	3	3	3	0	Sperm	tail
Exonuc_VII_L	PF02601.15	gi|384434745|ref|YP_005644103.1|	-	0.81	9.2	5.8	1.8	8.1	5.8	1.7	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Muted	PF14942.6	gi|384434745|ref|YP_005644103.1|	-	1.8	8.9	19.5	0.21	11.9	13.2	2.1	1	1	1	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
SOAR	PF16533.5	gi|384434745|ref|YP_005644103.1|	-	4.3	7.4	9.6	3.3	7.7	1.3	3.3	1	1	2	3	3	3	0	STIM1	Orai1-activating	region
AAA_18	PF13238.6	gi|384434746|ref|YP_005644104.1|	-	0.00081	19.9	0.0	0.27	11.8	0.0	3.1	2	0	0	2	2	2	1	AAA	domain
AAA_14	PF13173.6	gi|384434746|ref|YP_005644104.1|	-	0.0087	16.1	0.5	1.7	8.7	0.0	3.4	2	1	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|384434746|ref|YP_005644104.1|	-	0.05	14.1	0.0	0.94	10.0	0.0	2.6	2	0	0	2	2	2	0	ABC	transporter
AAA_29	PF13555.6	gi|384434746|ref|YP_005644104.1|	-	0.061	13.1	0.1	0.83	9.4	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|384434746|ref|YP_005644104.1|	-	0.12	12.8	0.0	20	5.6	0.0	2.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.23	gi|384434746|ref|YP_005644104.1|	-	0.15	12.2	0.3	16	5.6	0.0	3.2	3	0	0	3	3	3	0	50S	ribosome-binding	GTPase
OrfB_Zn_ribbon	PF07282.11	gi|384434747|ref|YP_005644105.1|	-	4e-22	77.9	0.1	7.7e-22	77.0	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434747|ref|YP_005644105.1|	-	1.2e-18	67.4	1.9	2e-18	66.7	0.0	2.2	2	1	1	3	3	3	1	Probable	transposase
FAM76	PF16046.5	gi|384434747|ref|YP_005644105.1|	-	0.019	14.3	0.7	0.055	12.8	0.7	1.7	1	0	0	1	1	1	0	FAM76	protein
DUF2833	PF11090.8	gi|384434747|ref|YP_005644105.1|	-	0.44	10.9	5.1	0.5	10.8	0.5	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2833)
Ribosomal_L37e	PF01907.19	gi|384434747|ref|YP_005644105.1|	-	0.72	10.1	4.0	1.3	9.2	1.2	2.6	3	0	0	3	3	3	0	Ribosomal	protein	L37e
Zn_Tnp_IS1595	PF12760.7	gi|384434747|ref|YP_005644105.1|	-	1.5	8.9	4.1	3.3	7.7	4.1	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384434747|ref|YP_005644105.1|	-	2.4	8.0	5.2	10	6.0	5.3	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Metallophos	PF00149.28	gi|384434748|ref|YP_005644106.1|	-	4.9e-10	40.3	0.1	1.1e-09	39.1	0.1	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|384434748|ref|YP_005644106.1|	-	1.8e-09	38.0	0.0	2.6e-09	37.5	0.0	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DDE_3	PF13358.6	gi|384434749|ref|YP_005644107.1|	-	6.6e-19	68.1	0.0	8.1e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|384434749|ref|YP_005644107.1|	-	0.091	13.0	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
DDE_1	PF03184.19	gi|384434749|ref|YP_005644107.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384434750|ref|YP_005644108.1|	-	1.6e-15	56.5	0.3	3.6e-14	52.1	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384434750|ref|YP_005644108.1|	-	6.1e-08	32.2	0.1	2.7e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384434750|ref|YP_005644108.1|	-	3.8e-07	30.3	1.3	5.7e-07	29.8	0.2	1.8	2	0	0	2	2	2	1	Transposase
HTH_28	PF13518.6	gi|384434750|ref|YP_005644108.1|	-	6e-07	29.5	0.0	2.4e-06	27.6	0.0	2.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384434750|ref|YP_005644108.1|	-	4e-06	26.9	0.8	8.9e-05	22.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384434750|ref|YP_005644108.1|	-	6.2e-06	26.2	2.8	2.1e-05	24.5	2.8	1.8	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384434750|ref|YP_005644108.1|	-	6.8e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384434750|ref|YP_005644108.1|	-	0.00012	22.6	0.0	0.0004	21.0	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384434750|ref|YP_005644108.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384434750|ref|YP_005644108.1|	-	0.00079	19.6	0.1	0.0018	18.4	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384434750|ref|YP_005644108.1|	-	0.0055	16.4	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384434750|ref|YP_005644108.1|	-	0.0099	16.0	1.6	0.052	13.7	0.1	2.5	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384434750|ref|YP_005644108.1|	-	0.01	14.9	0.1	0.014	14.5	0.1	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384434750|ref|YP_005644108.1|	-	0.01	15.8	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384434750|ref|YP_005644108.1|	-	0.017	15.2	0.1	0.061	13.4	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384434750|ref|YP_005644108.1|	-	0.021	14.2	0.1	0.066	12.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CENP-B_N	PF04218.13	gi|384434750|ref|YP_005644108.1|	-	0.027	14.1	0.0	0.069	12.8	0.0	1.7	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
MerR_1	PF13411.6	gi|384434750|ref|YP_005644108.1|	-	0.03	14.4	0.5	0.14	12.3	0.0	2.3	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|384434750|ref|YP_005644108.1|	-	0.072	13.2	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384434750|ref|YP_005644108.1|	-	0.13	11.9	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
TFIID_NTD2	PF04494.15	gi|384434751|ref|YP_005644109.1|	-	0.0015	18.8	0.6	0.0018	18.5	0.6	1.2	1	0	0	1	1	1	1	WD40	associated	region	in	TFIID	subunit,	NTD2	domain
Mistic	PF11458.8	gi|384434751|ref|YP_005644109.1|	-	0.0091	15.9	2.0	0.013	15.4	2.0	1.3	1	0	0	1	1	1	1	Membrane-integrating	protein	Mistic
DnaI_N	PF07319.11	gi|384434751|ref|YP_005644109.1|	-	0.022	15.4	1.2	0.029	15.0	1.2	1.2	1	0	0	1	1	1	0	Primosomal	protein	DnaI	N-terminus
DUF5616	PF18481.1	gi|384434751|ref|YP_005644109.1|	-	0.089	13.1	0.1	0.2	12.0	0.1	1.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5616)
PIN	PF01850.21	gi|384434752|ref|YP_005644110.1|	-	4.6e-07	30.4	0.4	5.3e-07	30.2	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
DDE_Tnp_1	PF01609.21	gi|384434756|ref|YP_005644114.1|	-	1.7e-11	44.2	1.0	2.4e-11	43.7	1.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|384434756|ref|YP_005644114.1|	-	7.4e-08	32.7	0.0	1.6e-07	31.6	0.0	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF4298	PF14131.6	gi|384434756|ref|YP_005644114.1|	-	0.081	12.9	2.2	0.17	11.9	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Endotoxin_C2	PF18449.1	gi|384434756|ref|YP_005644114.1|	-	0.25	11.7	1.9	0.45	10.9	1.9	1.4	1	0	0	1	1	1	0	Delta	endotoxin
DUF16	PF01519.16	gi|384434757|ref|YP_005644115.1|	-	0.0056	17.1	3.7	0.0071	16.8	3.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
XPG_I_2	PF12813.7	gi|384434757|ref|YP_005644115.1|	-	0.036	13.6	0.3	0.041	13.4	0.3	1.2	1	0	0	1	1	1	0	XPG	domain	containing
Spore_III_AB	PF09548.10	gi|384434757|ref|YP_005644115.1|	-	0.28	11.3	5.5	2.8	8.0	2.2	2.1	1	1	1	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
Transposase_20	PF02371.16	gi|384434758|ref|YP_005644116.1|	-	1.4e-26	92.6	0.0	2.7e-26	91.7	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384434758|ref|YP_005644116.1|	-	2.1e-16	60.2	0.0	3.8e-16	59.4	0.0	1.4	1	0	0	1	1	1	1	Transposase
NitrOD5	PF11537.8	gi|384434758|ref|YP_005644116.1|	-	0.097	12.8	0.3	0.27	11.4	0.0	1.8	2	0	0	2	2	2	0	Nitrosopumilus	output	domain	5
DUF4322	PF14210.6	gi|384434759|ref|YP_005644117.1|	-	4.7e-43	144.9	0.1	1.1e-42	143.7	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|384434759|ref|YP_005644117.1|	-	5.7e-08	32.7	0.0	9.4e-08	31.9	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
RAMPs	PF03787.15	gi|384434760|ref|YP_005644118.1|	-	1.5e-09	38.2	0.2	2.7e-09	37.4	0.2	1.4	1	0	0	1	1	1	1	RAMP	superfamily
DUF327	PF03885.13	gi|384434760|ref|YP_005644118.1|	-	0.055	13.4	0.3	0.055	13.4	0.3	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF327)
RAMPs	PF03787.15	gi|384434761|ref|YP_005644119.1|	-	0.0022	18.1	2.6	0.0022	18.1	2.6	2.6	2	1	0	2	2	2	1	RAMP	superfamily
DUF5398	PF17376.2	gi|384434761|ref|YP_005644119.1|	-	0.33	11.6	0.1	0.33	11.6	0.1	2.8	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5398)
RAMPs	PF03787.15	gi|384434763|ref|YP_005644121.1|	-	2.7e-23	83.1	1.0	3.8e-23	82.7	1.0	1.2	1	0	0	1	1	1	1	RAMP	superfamily
PaREP1	PF05942.11	gi|384434765|ref|YP_005644123.1|	-	9.6e-37	125.4	5.6	1.3e-36	125.0	5.6	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
FliS	PF02561.14	gi|384434765|ref|YP_005644123.1|	-	0.0031	17.8	0.8	0.01	16.1	0.4	1.9	2	0	0	2	2	2	1	Flagellar	protein	FliS
DUF357	PF04010.13	gi|384434765|ref|YP_005644123.1|	-	0.0085	16.1	0.1	0.027	14.5	0.1	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
TB2_DP1_HVA22	PF03134.19	gi|384434765|ref|YP_005644123.1|	-	0.053	13.4	0.4	0.081	12.9	0.4	1.3	1	0	0	1	1	1	0	TB2/DP1,	HVA22	family
PqqD	PF05402.12	gi|384434765|ref|YP_005644123.1|	-	0.081	13.2	0.4	0.25	11.7	0.0	2.1	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
aGPT-Pplase2	PF18724.1	gi|384434765|ref|YP_005644123.1|	-	0.11	12.3	1.5	0.65	9.7	0.1	2.0	1	1	0	2	2	2	0	Alpha-glutamyl/putrescinyl	thymine	pyrophosphorylase	clade	2
Telomere_reg-2	PF10193.9	gi|384434765|ref|YP_005644123.1|	-	0.12	12.8	0.3	0.26	11.7	0.3	1.6	1	0	0	1	1	1	0	Telomere	length	regulation	protein
DDE_Tnp_2	PF04693.12	gi|384434766|ref|YP_005644124.1|	-	1.9e-178	592.6	2.1	2.2e-178	592.4	2.1	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434766|ref|YP_005644124.1|	-	2.4e-05	23.8	0.0	4.6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434766|ref|YP_005644124.1|	-	0.0011	18.7	0.0	0.0018	17.9	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384434766|ref|YP_005644124.1|	-	0.046	13.4	0.1	0.086	12.6	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
PNP_UDP_1	PF01048.20	gi|384434767|ref|YP_005644125.1|	-	2e-26	92.7	0.0	2.5e-26	92.4	0.0	1.2	1	0	0	1	1	1	1	Phosphorylase	superfamily
RHH_1	PF01402.21	gi|384434768|ref|YP_005644126.1|	-	0.0086	16.0	0.3	0.0086	16.0	0.3	1.6	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
PHZA_PHZB	PF03284.13	gi|384434768|ref|YP_005644126.1|	-	0.052	13.2	0.0	0.062	12.9	0.0	1.2	1	0	0	1	1	1	0	Phenazine	biosynthesis	protein	A/B
RVP	PF00077.20	gi|384434769|ref|YP_005644127.1|	-	0.0011	19.2	0.0	0.0034	17.7	0.0	1.7	1	1	0	1	1	1	1	Retroviral	aspartyl	protease
Asp_protease_2	PF13650.6	gi|384434769|ref|YP_005644127.1|	-	0.14	12.8	0.0	0.21	12.3	0.0	1.3	1	0	0	1	1	1	0	Aspartyl	protease
Pyr_redox_2	PF07992.14	gi|384434770|ref|YP_005644128.1|	-	4.7e-47	160.6	0.2	6.9e-47	160.1	0.2	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|384434770|ref|YP_005644128.1|	-	1.2e-21	77.0	3.7	1.1e-14	54.8	0.4	3.4	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384434770|ref|YP_005644128.1|	-	3.4e-15	56.1	1.5	2.9e-13	49.7	1.5	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|384434770|ref|YP_005644128.1|	-	7.2e-12	45.6	0.0	3.9e-11	43.2	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
GIDA	PF01134.22	gi|384434770|ref|YP_005644128.1|	-	2.1e-10	40.3	4.9	0.0026	16.9	0.2	3.9	3	2	1	4	4	4	3	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|384434770|ref|YP_005644128.1|	-	8.8e-10	38.7	0.4	8.6e-06	25.9	0.1	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|384434770|ref|YP_005644128.1|	-	1.7e-08	33.6	4.9	1.5e-05	23.9	0.1	3.6	3	1	1	4	4	4	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|384434770|ref|YP_005644128.1|	-	2.4e-08	33.6	0.5	8.4e-05	22.0	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|384434770|ref|YP_005644128.1|	-	3.2e-07	30.1	0.0	0.00038	19.9	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|384434770|ref|YP_005644128.1|	-	4.3e-06	26.1	2.0	0.00052	19.2	0.2	3.1	3	0	0	3	3	3	1	FAD	binding	domain
DAO	PF01266.24	gi|384434770|ref|YP_005644128.1|	-	1.4e-05	24.9	1.7	2.6e-05	24.0	0.2	2.2	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|384434770|ref|YP_005644128.1|	-	1.5e-05	24.4	0.2	0.00017	20.9	0.0	2.6	3	0	0	3	3	3	1	Thi4	family
NAD_binding_9	PF13454.6	gi|384434770|ref|YP_005644128.1|	-	0.00016	21.7	0.3	0.028	14.4	0.0	3.2	2	1	1	3	3	3	1	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|384434770|ref|YP_005644128.1|	-	0.00024	20.5	0.4	0.28	10.5	0.0	3.0	3	1	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
ApbA	PF02558.16	gi|384434770|ref|YP_005644128.1|	-	0.00058	19.5	0.8	1	9.0	0.0	2.5	2	0	0	2	2	2	2	Ketopantoate	reductase	PanE/ApbA
Amino_oxidase	PF01593.24	gi|384434770|ref|YP_005644128.1|	-	0.0021	17.4	0.2	1.6	8.0	0.0	3.0	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
Trp_halogenase	PF04820.14	gi|384434770|ref|YP_005644128.1|	-	0.0041	16.0	0.7	0.016	14.1	0.1	1.9	2	0	0	2	2	2	1	Tryptophan	halogenase
Lycopene_cycl	PF05834.12	gi|384434770|ref|YP_005644128.1|	-	0.0048	16.0	1.3	0.27	10.2	0.1	3.2	3	1	1	4	4	4	1	Lycopene	cyclase	protein
TrkA_N	PF02254.18	gi|384434770|ref|YP_005644128.1|	-	0.014	15.6	0.6	0.68	10.2	0.1	2.9	3	0	0	3	3	3	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|384434770|ref|YP_005644128.1|	-	0.17	12.3	0.1	1.5	9.3	0.0	2.2	2	0	0	2	2	2	0	Putative	NAD(P)-binding
E1_dh	PF00676.20	gi|384434771|ref|YP_005644129.1|	-	7.7e-93	310.7	0.0	9.7e-93	310.4	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
TPP_enzyme_C	PF02775.21	gi|384434771|ref|YP_005644129.1|	-	3.2e-10	40.0	0.3	5.2e-10	39.3	0.3	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|384434771|ref|YP_005644129.1|	-	3.1e-08	33.2	0.1	9.3e-08	31.6	0.1	1.7	1	1	1	2	2	2	1	1-deoxy-D-xylulose-5-phosphate	synthase
Transketolase_N	PF00456.21	gi|384434771|ref|YP_005644129.1|	-	0.0028	16.7	0.0	0.0045	16.0	0.0	1.3	1	0	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
SpoVS	PF04232.12	gi|384434771|ref|YP_005644129.1|	-	0.0061	16.3	0.0	0.021	14.5	0.1	1.8	2	0	0	2	2	2	1	Stage	V	sporulation	protein	S	(SpoVS)
Transket_pyr	PF02779.24	gi|384434772|ref|YP_005644130.1|	-	6.7e-59	198.5	0.0	1.5e-57	194.1	0.0	2.0	2	0	0	2	2	2	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|384434772|ref|YP_005644130.1|	-	7.3e-41	138.9	0.0	1.5e-40	137.9	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|384434772|ref|YP_005644130.1|	-	0.013	15.8	0.0	0.028	14.7	0.0	1.6	1	0	0	1	1	1	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
NAD_kinase	PF01513.21	gi|384434773|ref|YP_005644131.1|	-	3.2e-13	49.5	0.4	1.2e-12	47.6	0.2	1.9	2	1	0	2	2	2	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|384434773|ref|YP_005644131.1|	-	9.9e-08	31.7	0.2	1.5e-06	27.9	0.1	2.1	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
2-oxoacid_dh	PF00198.23	gi|384434774|ref|YP_005644132.1|	-	3e-81	272.3	1.4	4.1e-81	271.8	1.4	1.1	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|384434774|ref|YP_005644132.1|	-	5.7e-19	67.7	3.4	5.7e-19	67.7	3.4	3.0	3	0	0	3	3	3	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|384434774|ref|YP_005644132.1|	-	1.3e-17	63.8	2.3	2.3e-16	59.8	0.9	2.5	2	0	0	2	2	2	1	e3	binding	domain
Biotin_lipoyl_2	PF13533.6	gi|384434774|ref|YP_005644132.1|	-	6.1e-09	35.6	7.3	0.00027	20.7	0.1	3.1	2	1	1	3	3	3	2	Biotin-lipoyl	like
HlyD_3	PF13437.6	gi|384434774|ref|YP_005644132.1|	-	0.00062	20.4	3.9	0.13	12.9	0.2	3.3	3	0	0	3	3	3	1	HlyD	family	secretion	protein
CAT	PF00302.18	gi|384434774|ref|YP_005644132.1|	-	0.0026	17.7	0.0	0.004	17.1	0.0	1.2	1	0	0	1	1	1	1	Chloramphenicol	acetyltransferase
GCV_H	PF01597.19	gi|384434774|ref|YP_005644132.1|	-	0.0042	17.0	0.2	0.0096	15.8	0.2	1.6	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.6	gi|384434774|ref|YP_005644132.1|	-	0.0087	16.0	0.2	0.12	12.4	0.1	2.5	1	1	1	2	2	2	1	RnfC	Barrel	sandwich	hybrid	domain
Transferase	PF02458.15	gi|384434774|ref|YP_005644132.1|	-	0.0095	14.6	0.0	0.018	13.7	0.0	1.3	1	0	0	1	1	1	1	Transferase	family
DUF2118	PF09891.9	gi|384434774|ref|YP_005644132.1|	-	0.011	15.7	0.1	0.042	13.8	0.1	2.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
Peptidase_M23	PF01551.22	gi|384434774|ref|YP_005644132.1|	-	0.011	15.9	0.0	0.025	14.8	0.0	1.5	1	0	0	1	1	1	0	Peptidase	family	M23
AATase	PF07247.12	gi|384434774|ref|YP_005644132.1|	-	0.015	13.9	0.3	3.6	6.0	0.0	2.7	3	0	0	3	3	3	0	Alcohol	acetyltransferase
PTS_EIIA_1	PF00358.20	gi|384434774|ref|YP_005644132.1|	-	0.057	13.2	0.3	0.22	11.3	0.2	2.0	1	1	1	2	2	2	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
QRPTase_N	PF02749.16	gi|384434774|ref|YP_005644132.1|	-	0.067	13.3	0.2	4.4	7.4	0.1	2.6	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
FAD_binding_4	PF01565.23	gi|384434775|ref|YP_005644133.1|	-	3e-38	130.7	0.0	4.8e-38	130.0	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.19	gi|384434775|ref|YP_005644133.1|	-	2e-28	99.7	0.0	2.8e-28	99.2	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
Bac_luciferase	PF00296.20	gi|384434776|ref|YP_005644134.1|	-	2.3e-41	142.2	0.0	4.6e-41	141.2	0.0	1.4	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
HgmA	PF04209.13	gi|384434777|ref|YP_005644135.1|	-	4.2e-19	68.6	0.6	7.7e-19	67.7	0.6	1.3	1	1	0	1	1	1	1	homogentisate	1,2-dioxygenase
Cupin_2	PF07883.11	gi|384434777|ref|YP_005644135.1|	-	1.2e-06	28.1	0.1	3.8e-05	23.3	0.0	2.4	2	0	0	2	2	2	1	Cupin	domain
Cupin_3	PF05899.12	gi|384434777|ref|YP_005644135.1|	-	0.00082	19.0	0.0	0.0022	17.6	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|384434777|ref|YP_005644135.1|	-	0.02	14.8	0.5	0.064	13.2	0.0	2.0	2	1	1	3	3	3	0	AraC-like	ligand	binding	domain
Cupin_6	PF12852.7	gi|384434777|ref|YP_005644135.1|	-	0.16	11.6	0.0	0.28	10.9	0.0	1.3	1	0	0	1	1	1	0	Cupin
MFS_1	PF07690.16	gi|384434778|ref|YP_005644136.1|	-	3.1e-39	134.9	43.9	1.2e-38	133.0	39.9	2.8	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384434778|ref|YP_005644136.1|	-	4.7e-09	35.6	1.4	4.7e-09	35.6	1.4	3.8	2	2	2	4	4	4	2	Sugar	(and	other)	transporter
OATP	PF03137.20	gi|384434778|ref|YP_005644136.1|	-	3.9e-07	28.7	11.3	0.0011	17.4	2.3	3.6	2	1	1	3	3	3	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
MFS_3	PF05977.13	gi|384434778|ref|YP_005644136.1|	-	0.0033	15.9	1.2	0.0033	15.9	1.2	1.7	2	0	0	2	2	2	1	Transmembrane	secretion	effector
DUF772	PF05598.11	gi|384434779|ref|YP_005644137.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.7	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434779|ref|YP_005644137.1|	-	0.031	13.9	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
Lactamase_B	PF00753.27	gi|384434780|ref|YP_005644138.1|	-	8e-29	101.1	0.0	9.6e-29	100.8	0.0	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384434780|ref|YP_005644138.1|	-	0.00065	19.3	0.1	0.0015	18.1	0.1	1.8	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Chalcone_3	PF16036.5	gi|384434780|ref|YP_005644138.1|	-	0.15	12.2	0.0	0.26	11.4	0.0	1.5	1	1	0	1	1	1	0	Chalcone	isomerase-like
Peptidase_M20	PF01546.28	gi|384434781|ref|YP_005644139.1|	-	7.6e-38	130.3	0.0	2.1e-37	128.8	0.0	1.6	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|384434781|ref|YP_005644139.1|	-	3.2e-19	68.9	0.0	8.5e-19	67.5	0.0	1.8	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|384434781|ref|YP_005644139.1|	-	0.0021	17.8	0.0	0.0031	17.2	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
MFS_1	PF07690.16	gi|384434782|ref|YP_005644140.1|	-	7.6e-25	87.6	79.0	4.6e-19	68.6	49.6	2.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384434782|ref|YP_005644140.1|	-	2.1e-11	43.3	38.9	4.1e-11	42.4	10.4	2.4	1	1	0	2	2	2	2	Sugar	(and	other)	transporter
Peptidase_S58	PF03576.14	gi|384434783|ref|YP_005644141.1|	-	1.4e-30	106.9	0.2	1.7e-30	106.6	0.2	1.0	1	0	0	1	1	1	1	Peptidase	family	S58
adh_short_C2	PF13561.6	gi|384434784|ref|YP_005644142.1|	-	5.1e-57	193.1	0.0	6.2e-57	192.8	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384434784|ref|YP_005644142.1|	-	3.6e-39	134.2	0.2	5.2e-39	133.7	0.2	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384434784|ref|YP_005644142.1|	-	6.9e-10	39.1	0.6	3.8e-09	36.7	0.6	1.9	1	1	0	1	1	1	1	KR	domain
2-Hacid_dh_C	PF02826.19	gi|384434784|ref|YP_005644142.1|	-	0.00041	19.8	0.1	0.00079	18.8	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|384434784|ref|YP_005644142.1|	-	0.0016	18.5	0.6	0.0042	17.2	0.3	1.7	1	1	1	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
DUF1776	PF08643.10	gi|384434784|ref|YP_005644142.1|	-	0.0019	17.6	0.0	0.0026	17.2	0.0	1.1	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
THF_DHG_CYH_C	PF02882.19	gi|384434784|ref|YP_005644142.1|	-	0.0026	17.1	0.0	0.037	13.3	0.0	2.0	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Epimerase	PF01370.21	gi|384434784|ref|YP_005644142.1|	-	0.006	16.1	0.2	0.54	9.7	0.0	2.1	2	0	0	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
ATPase_2	PF01637.18	gi|384434785|ref|YP_005644143.1|	-	1.1e-22	81.1	1.6	1.9e-22	80.3	1.6	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|384434785|ref|YP_005644143.1|	-	3.2e-12	46.6	0.8	8.8e-06	25.8	0.0	2.8	2	1	1	3	3	3	2	AAA	domain
AAA_22	PF13401.6	gi|384434785|ref|YP_005644143.1|	-	5.4e-07	30.0	0.1	1.4e-06	28.6	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|384434785|ref|YP_005644143.1|	-	9.7e-05	22.8	0.0	0.0028	18.1	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|384434785|ref|YP_005644143.1|	-	0.0001	22.8	0.0	0.0002	21.8	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
DUF815	PF05673.13	gi|384434785|ref|YP_005644143.1|	-	0.0061	15.7	0.3	0.031	13.4	0.3	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|384434785|ref|YP_005644143.1|	-	0.0094	15.4	1.4	0.4	10.0	0.0	2.8	3	1	0	3	3	3	1	Bacterial	TniB	protein
TrmB	PF01978.19	gi|384434785|ref|YP_005644143.1|	-	0.082	12.8	0.0	0.27	11.2	0.0	1.9	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DDE_Tnp_1	PF01609.21	gi|384434786|ref|YP_005644144.1|	-	1.7e-11	44.2	0.1	2.8e-11	43.5	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Radical_SAM	PF04055.21	gi|384434789|ref|YP_005644147.1|	-	3.2e-11	43.9	0.1	7.8e-11	42.6	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434789|ref|YP_005644147.1|	-	2e-06	28.1	0.1	3.4e-06	27.4	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384434789|ref|YP_005644147.1|	-	8.3e-05	22.7	0.1	0.00015	21.9	0.1	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Kin17_mid	PF10357.9	gi|384434791|ref|YP_005644149.1|	-	0.01	15.8	1.4	0.022	14.7	0.6	1.8	1	1	1	2	2	2	0	Domain	of	Kin17	curved	DNA-binding	protein
STN1_2	PF09170.10	gi|384434791|ref|YP_005644149.1|	-	0.068	13.4	0.6	0.086	13.1	0.6	1.2	1	0	0	1	1	1	0	CST,	Suppressor	of	cdc	thirteen	homolog,	complex	subunit	STN1
BRCT_2	PF16589.5	gi|384434791|ref|YP_005644149.1|	-	0.13	12.7	0.3	0.2	12.1	0.3	1.4	1	1	0	1	1	1	0	BRCT	domain,	a	BRCA1	C-terminus	domain
5_nucleotid	PF05761.14	gi|384434791|ref|YP_005644149.1|	-	0.16	10.9	0.5	0.19	10.6	0.5	1.0	1	0	0	1	1	1	0	5'	nucleotidase	family
NAD_binding_2	PF03446.15	gi|384434792|ref|YP_005644150.1|	-	3.2e-54	183.4	0.9	4.8e-54	182.8	0.9	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.6	gi|384434792|ref|YP_005644150.1|	-	3.6e-30	104.7	0.2	5.2e-30	104.2	0.2	1.2	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.17	gi|384434792|ref|YP_005644150.1|	-	2e-09	37.9	0.3	7.2e-09	36.1	0.1	2.0	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.20	gi|384434792|ref|YP_005644150.1|	-	1.3e-06	28.5	0.0	2.4e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|384434792|ref|YP_005644150.1|	-	0.00015	21.2	0.4	0.00036	19.9	0.1	1.8	2	1	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|384434792|ref|YP_005644150.1|	-	0.00025	21.0	0.2	0.0024	17.8	0.1	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|384434792|ref|YP_005644150.1|	-	0.0036	17.0	0.0	0.0059	16.3	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.12	gi|384434792|ref|YP_005644150.1|	-	0.037	13.6	0.1	0.066	12.8	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Resolvase	PF00239.21	gi|384434795|ref|YP_005644153.1|	-	3.5e-18	66.1	0.1	4.5e-18	65.8	0.1	1.1	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384434795|ref|YP_005644153.1|	-	4.8e-11	42.7	0.0	8.9e-11	41.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384434795|ref|YP_005644153.1|	-	1.5e-08	34.6	0.1	3.2e-08	33.5	0.1	1.5	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384434795|ref|YP_005644153.1|	-	2.2e-06	27.3	0.0	3.9e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384434795|ref|YP_005644153.1|	-	0.00013	21.7	0.4	0.0013	18.5	0.0	2.3	2	0	0	2	2	2	1	MerR	HTH	family	regulatory	protein
CLP1_P	PF16575.5	gi|384434795|ref|YP_005644153.1|	-	0.003	17.4	0.3	0.0048	16.7	0.0	1.4	2	0	0	2	2	2	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HTH_23	PF13384.6	gi|384434795|ref|YP_005644153.1|	-	0.016	15.0	0.0	0.043	13.6	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
AbiEi_4	PF13338.6	gi|384434795|ref|YP_005644153.1|	-	0.039	14.1	0.0	0.085	13.0	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
Sigma70_ner	PF04546.13	gi|384434795|ref|YP_005644153.1|	-	0.05	13.5	0.2	0.05	13.5	0.2	1.7	2	0	0	2	2	2	0	Sigma-70,	non-essential	region
HTH_24	PF13412.6	gi|384434795|ref|YP_005644153.1|	-	0.058	13.0	0.0	0.15	11.6	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.6	gi|384434795|ref|YP_005644153.1|	-	0.069	13.2	0.0	0.47	10.5	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn	helix
DUF2325	PF10087.9	gi|384434795|ref|YP_005644153.1|	-	0.17	12.0	1.3	5.4	7.2	0.1	2.6	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
Pyr_redox_2	PF07992.14	gi|384434796|ref|YP_005644154.1|	-	7.1e-51	173.2	0.2	1e-50	172.7	0.2	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|384434796|ref|YP_005644154.1|	-	1.7e-18	66.9	0.0	7.2e-18	64.9	0.0	2.2	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|384434796|ref|YP_005644154.1|	-	3.9e-12	46.6	2.7	2e-11	44.3	0.1	2.6	3	0	0	3	3	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|384434796|ref|YP_005644154.1|	-	3e-09	36.5	8.1	3.7e-09	36.3	5.9	2.9	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|384434796|ref|YP_005644154.1|	-	4.2e-08	32.7	10.6	0.00016	20.9	2.7	4.1	4	1	0	4	4	4	3	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|384434796|ref|YP_005644154.1|	-	3.6e-07	29.6	2.0	4.9e-05	22.6	0.3	3.1	3	0	0	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|384434796|ref|YP_005644154.1|	-	5.4e-07	28.7	5.4	0.00046	19.0	0.2	3.4	3	1	1	4	4	4	2	HI0933-like	protein
K_oxygenase	PF13434.6	gi|384434796|ref|YP_005644154.1|	-	2.9e-06	26.7	0.1	0.0006	19.1	0.0	2.5	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.12	gi|384434796|ref|YP_005644154.1|	-	3.2e-06	26.4	0.1	0.00024	20.3	0.0	2.3	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_8	PF13450.6	gi|384434796|ref|YP_005644154.1|	-	7.8e-06	26.0	1.8	0.0036	17.5	0.1	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|384434796|ref|YP_005644154.1|	-	3.5e-05	23.8	0.0	0.098	12.5	0.0	2.6	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|384434796|ref|YP_005644154.1|	-	5.4e-05	22.9	0.7	0.56	9.7	0.0	3.7	4	0	0	4	4	4	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|384434796|ref|YP_005644154.1|	-	7.2e-05	22.1	0.3	0.028	13.7	0.1	2.4	2	0	0	2	2	2	2	Thi4	family
FAD_binding_3	PF01494.19	gi|384434796|ref|YP_005644154.1|	-	0.00039	19.8	0.4	0.1	11.8	0.1	2.6	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|384434796|ref|YP_005644154.1|	-	0.0013	18.2	0.0	0.0023	17.3	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|384434796|ref|YP_005644154.1|	-	0.0023	17.3	0.2	0.34	10.3	0.0	2.4	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|384434796|ref|YP_005644154.1|	-	0.013	14.8	0.4	0.56	9.5	0.0	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ThiF	PF00899.21	gi|384434796|ref|YP_005644154.1|	-	0.026	13.9	0.3	0.21	10.9	0.0	2.1	2	0	0	2	2	2	0	ThiF	family
Amino_oxidase	PF01593.24	gi|384434796|ref|YP_005644154.1|	-	0.036	13.4	0.0	0.1	11.8	0.0	1.7	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
XdhC_C	PF13478.6	gi|384434796|ref|YP_005644154.1|	-	0.044	14.3	0.1	2.1	8.9	0.0	3.2	3	1	0	3	3	3	0	XdhC	Rossmann	domain
UDPG_MGDP_dh_N	PF03721.14	gi|384434796|ref|YP_005644154.1|	-	0.05	13.2	0.9	0.5	9.9	0.1	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
PglD_N	PF17836.1	gi|384434796|ref|YP_005644154.1|	-	0.37	11.5	4.7	0.98	10.1	0.3	3.0	3	1	0	3	3	2	0	PglD	N-terminal	domain
Radical_SAM	PF04055.21	gi|384434797|ref|YP_005644155.1|	-	1.5e-18	67.8	0.3	4.8e-18	66.1	0.1	2.0	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434797|ref|YP_005644155.1|	-	6.1e-09	36.3	0.1	2.2e-08	34.5	0.0	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|384434797|ref|YP_005644155.1|	-	0.0012	19.0	0.1	0.0035	17.5	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|384434797|ref|YP_005644155.1|	-	0.011	16.2	0.4	0.035	14.6	0.4	1.9	1	0	0	1	1	1	0	Iron-sulfur	cluster-binding	domain
Lactamase_B	PF00753.27	gi|384434798|ref|YP_005644156.1|	-	1.7e-29	103.2	0.5	2.1e-29	102.9	0.5	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384434798|ref|YP_005644156.1|	-	0.00094	18.7	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|384434798|ref|YP_005644156.1|	-	0.07	12.6	0.0	0.094	12.1	0.0	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Cupin_2	PF07883.11	gi|384434801|ref|YP_005644159.1|	-	1.3e-15	56.9	0.0	1.7e-15	56.5	0.0	1.2	1	0	0	1	1	1	1	Cupin	domain
MannoseP_isomer	PF01050.18	gi|384434801|ref|YP_005644159.1|	-	3.9e-07	30.1	0.1	4.1e-07	30.0	0.1	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
AraC_binding	PF02311.19	gi|384434801|ref|YP_005644159.1|	-	4.8e-07	29.8	0.0	6.5e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|384434801|ref|YP_005644159.1|	-	2.7e-06	27.1	0.0	3.4e-06	26.7	0.0	1.3	1	1	0	1	1	1	1	Cupin
Ectoine_synth	PF06339.12	gi|384434801|ref|YP_005644159.1|	-	9.6e-06	25.8	0.2	1.1e-05	25.6	0.2	1.1	1	0	0	1	1	1	1	Ectoine	synthase
Cupin_3	PF05899.12	gi|384434801|ref|YP_005644159.1|	-	0.0002	21.0	0.0	0.00036	20.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
DUF4437	PF14499.6	gi|384434801|ref|YP_005644159.1|	-	0.0013	17.9	0.0	0.0016	17.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4437)
Asp_Arg_Hydrox	PF05118.15	gi|384434801|ref|YP_005644159.1|	-	0.0018	18.1	0.0	0.0023	17.8	0.0	1.2	1	0	0	1	1	1	1	Aspartyl/Asparaginyl	beta-hydroxylase
Cu-oxidase_2	PF07731.14	gi|384434801|ref|YP_005644159.1|	-	0.027	14.2	0.0	0.035	13.8	0.0	1.3	1	0	0	1	1	1	0	Multicopper	oxidase
DUF2584	PF10763.9	gi|384434801|ref|YP_005644159.1|	-	0.053	13.7	0.1	0.19	11.9	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2584)
Cupin_6	PF12852.7	gi|384434801|ref|YP_005644159.1|	-	0.054	13.2	0.0	0.068	12.9	0.0	1.1	1	0	0	1	1	1	0	Cupin
DMSP_lyase	PF16867.5	gi|384434801|ref|YP_005644159.1|	-	0.062	12.9	0.0	0.084	12.5	0.0	1.2	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
Cupin_7	PF12973.7	gi|384434801|ref|YP_005644159.1|	-	0.11	12.4	0.0	0.17	11.9	0.0	1.4	1	1	0	1	1	1	0	ChrR	Cupin-like	domain
COX1	PF00115.20	gi|384434802|ref|YP_005644160.1|	-	4.1e-38	131.4	48.2	4.1e-38	131.4	48.2	2.4	3	0	0	3	3	3	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Nitrate_red_del	PF02613.15	gi|384434803|ref|YP_005644161.1|	-	1e-19	70.9	0.0	1.3e-19	70.5	0.0	1.1	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Fer4_7	PF12838.7	gi|384434804|ref|YP_005644162.1|	-	3.5e-16	59.5	36.2	2.9e-09	37.4	12.7	4.4	4	1	2	6	6	6	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384434804|ref|YP_005644162.1|	-	3.9e-16	58.1	47.4	1.1e-06	28.1	2.3	5.7	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384434804|ref|YP_005644162.1|	-	2.3e-14	53.2	35.5	9.5e-08	32.1	7.9	3.9	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384434804|ref|YP_005644162.1|	-	6.9e-13	48.5	34.4	5.8e-07	29.6	8.7	3.8	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384434804|ref|YP_005644162.1|	-	7.9e-13	49.1	33.8	0.00047	21.0	2.4	5.1	5	0	0	5	5	5	4	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|384434804|ref|YP_005644162.1|	-	1e-12	47.9	31.1	1.9e-07	31.1	11.7	3.9	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384434804|ref|YP_005644162.1|	-	7.6e-10	38.4	51.4	0.00038	20.4	2.5	5.2	6	0	0	6	6	5	4	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384434804|ref|YP_005644162.1|	-	1.1e-08	34.6	42.4	9.4e-05	22.3	2.5	5.7	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|384434804|ref|YP_005644162.1|	-	5.2e-08	33.2	24.9	0.03	14.8	2.4	4.7	4	1	0	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|384434804|ref|YP_005644162.1|	-	1.4e-07	32.1	11.2	0.027	15.2	0.3	4.3	4	0	0	4	4	4	3	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|384434804|ref|YP_005644162.1|	-	5.3e-05	23.7	24.6	0.0076	16.8	0.6	4.8	4	0	0	4	4	4	3	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|384434804|ref|YP_005644162.1|	-	5.7e-05	23.3	46.3	0.004	17.5	1.7	5.9	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384434804|ref|YP_005644162.1|	-	8.4e-05	23.0	30.8	0.12	13.0	1.9	5.0	3	1	3	6	6	6	4	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384434804|ref|YP_005644162.1|	-	0.00014	22.1	24.6	0.15	12.3	2.1	4.1	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|384434804|ref|YP_005644162.1|	-	0.0012	19.6	53.5	0.067	14.2	3.6	5.7	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|384434805|ref|YP_005644163.1|	-	2.4e-15	56.9	26.3	2e-08	34.7	8.1	3.0	2	2	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384434805|ref|YP_005644163.1|	-	7.1e-13	48.5	22.1	2.7e-08	33.8	4.6	2.9	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_11	PF13247.6	gi|384434805|ref|YP_005644163.1|	-	3.6e-12	46.3	20.5	1.5e-09	37.9	5.8	2.8	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384434805|ref|YP_005644163.1|	-	4.6e-12	45.2	35.6	6.6e-08	32.1	3.7	6.0	5	1	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|384434805|ref|YP_005644163.1|	-	1.4e-09	37.9	25.5	1.5e-05	25.0	10.0	3.3	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384434805|ref|YP_005644163.1|	-	2.1e-09	37.0	36.1	7.7e-05	22.6	3.2	4.9	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|384434805|ref|YP_005644163.1|	-	2e-08	33.8	37.7	9.3e-05	22.3	2.0	4.6	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|384434805|ref|YP_005644163.1|	-	5e-07	30.2	41.7	0.037	15.0	5.5	4.4	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|384434805|ref|YP_005644163.1|	-	5.3e-05	23.6	19.4	0.0033	17.9	4.6	3.0	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|384434805|ref|YP_005644163.1|	-	7.5e-05	22.8	29.2	9e-05	22.5	8.2	3.5	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384434805|ref|YP_005644163.1|	-	0.0012	19.3	24.2	0.022	15.3	5.5	3.4	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384434805|ref|YP_005644163.1|	-	0.0072	16.8	35.7	0.016	15.7	1.4	5.0	4	2	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|384434805|ref|YP_005644163.1|	-	0.019	15.9	28.1	1.4	9.9	8.0	4.0	3	1	1	4	4	4	0	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|384434805|ref|YP_005644163.1|	-	0.022	14.9	14.2	0.096	12.9	3.9	3.3	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|384434805|ref|YP_005644163.1|	-	0.08	13.5	0.3	0.08	13.5	0.3	4.6	5	0	0	5	5	5	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|384434805|ref|YP_005644163.1|	-	0.085	13.6	1.0	0.085	13.6	1.0	3.5	4	1	0	4	4	3	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|384434805|ref|YP_005644163.1|	-	5	8.1	19.1	5.1	8.0	1.2	3.5	2	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384434806|ref|YP_005644164.1|	-	0.0043	17.2	9.7	0.0086	16.2	9.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|384434806|ref|YP_005644164.1|	-	0.0047	17.1	6.7	0.0095	16.1	6.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384434806|ref|YP_005644164.1|	-	0.076	13.5	7.8	2.6	8.6	0.7	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|384434806|ref|YP_005644164.1|	-	0.22	12.1	4.5	1.1	9.9	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384434806|ref|YP_005644164.1|	-	0.27	11.4	14.6	0.45	10.7	3.3	2.2	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF973	PF06157.11	gi|384434807|ref|YP_005644165.1|	-	1e-82	277.7	45.6	1.1e-82	277.6	45.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
DUF996	PF06195.13	gi|384434807|ref|YP_005644165.1|	-	0.023	15.0	41.7	0.3	11.3	13.9	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF996)
Glyco_hydro_30C	PF17189.4	gi|384434808|ref|YP_005644166.1|	-	0.096	12.9	0.1	0.096	12.9	0.1	3.9	3	1	0	3	3	3	0	Glycosyl	hydrolase	family	30	beta	sandwich	domain
DrsE_2	PF13686.6	gi|384434809|ref|YP_005644167.1|	-	1e-05	25.5	0.0	1.4e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|384434809|ref|YP_005644167.1|	-	0.033	14.6	0.0	0.12	12.8	0.0	1.9	1	1	0	1	1	1	0	DsrE/DsrF-like	family
HTH_56	PF18662.1	gi|384434809|ref|YP_005644167.1|	-	0.11	12.6	0.0	0.17	12.0	0.0	1.3	1	0	0	1	1	1	0	Cch	helix	turn	helix	domain
adh_short_C2	PF13561.6	gi|384434810|ref|YP_005644168.1|	-	6.1e-74	248.5	0.0	7e-74	248.3	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|384434810|ref|YP_005644168.1|	-	2.7e-60	203.2	0.2	3.5e-60	202.8	0.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|384434810|ref|YP_005644168.1|	-	6.7e-16	58.7	0.0	9.7e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	KR	domain
DUF1776	PF08643.10	gi|384434810|ref|YP_005644168.1|	-	0.0061	16.0	0.0	0.01	15.2	0.0	1.3	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
3Beta_HSD	PF01073.19	gi|384434810|ref|YP_005644168.1|	-	0.019	14.0	0.1	0.025	13.6	0.1	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
HTH_33	PF13592.6	gi|384434812|ref|YP_005644170.1|	-	1.6e-15	56.5	0.3	3.6e-14	52.1	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384434812|ref|YP_005644170.1|	-	6.1e-08	32.2	0.1	2.7e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384434812|ref|YP_005644170.1|	-	3.8e-07	30.3	1.3	5.7e-07	29.8	0.2	1.8	2	0	0	2	2	2	1	Transposase
HTH_28	PF13518.6	gi|384434812|ref|YP_005644170.1|	-	6e-07	29.5	0.0	2.4e-06	27.6	0.0	2.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384434812|ref|YP_005644170.1|	-	4e-06	26.9	0.8	8.9e-05	22.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384434812|ref|YP_005644170.1|	-	6.2e-06	26.2	2.8	2.1e-05	24.5	2.8	1.8	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384434812|ref|YP_005644170.1|	-	6.8e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384434812|ref|YP_005644170.1|	-	0.00012	22.6	0.0	0.0004	21.0	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384434812|ref|YP_005644170.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384434812|ref|YP_005644170.1|	-	0.00079	19.6	0.1	0.0018	18.4	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384434812|ref|YP_005644170.1|	-	0.0055	16.4	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384434812|ref|YP_005644170.1|	-	0.0099	16.0	1.6	0.052	13.7	0.1	2.5	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384434812|ref|YP_005644170.1|	-	0.01	14.9	0.1	0.014	14.5	0.1	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384434812|ref|YP_005644170.1|	-	0.01	15.8	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384434812|ref|YP_005644170.1|	-	0.017	15.2	0.1	0.061	13.4	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384434812|ref|YP_005644170.1|	-	0.021	14.2	0.1	0.066	12.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CENP-B_N	PF04218.13	gi|384434812|ref|YP_005644170.1|	-	0.027	14.1	0.0	0.069	12.8	0.0	1.7	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
MerR_1	PF13411.6	gi|384434812|ref|YP_005644170.1|	-	0.03	14.4	0.5	0.14	12.3	0.0	2.3	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|384434812|ref|YP_005644170.1|	-	0.072	13.2	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384434812|ref|YP_005644170.1|	-	0.13	11.9	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DDE_3	PF13358.6	gi|384434813|ref|YP_005644171.1|	-	6.6e-19	68.1	0.0	8.1e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|384434813|ref|YP_005644171.1|	-	0.091	13.0	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
DDE_1	PF03184.19	gi|384434813|ref|YP_005644171.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
DUF772	PF05598.11	gi|384434815|ref|YP_005644173.1|	-	0.00066	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434815|ref|YP_005644173.1|	-	0.041	13.5	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
GntR	PF00392.21	gi|384434816|ref|YP_005644174.1|	-	1.1e-14	53.8	0.0	2.4e-14	52.7	0.0	1.5	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|384434816|ref|YP_005644174.1|	-	0.00053	19.9	0.0	0.00084	19.3	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|384434816|ref|YP_005644174.1|	-	0.017	14.8	0.0	0.038	13.8	0.0	1.6	1	1	0	1	1	1	0	LexA	DNA	binding	domain
MarR	PF01047.22	gi|384434816|ref|YP_005644174.1|	-	0.034	14.1	0.0	0.069	13.1	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|384434816|ref|YP_005644174.1|	-	0.085	12.9	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
GPP34	PF05719.11	gi|384434816|ref|YP_005644174.1|	-	0.086	12.9	0.0	0.098	12.7	0.0	1.2	1	0	0	1	1	1	0	Golgi	phosphoprotein	3	(GPP34)
DUF1908	PF08926.11	gi|384434816|ref|YP_005644174.1|	-	0.16	11.0	0.0	0.32	10.0	0.0	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1908)
DUF1648	PF07853.11	gi|384434817|ref|YP_005644175.1|	-	0.016	14.8	0.1	0.016	14.8	0.1	3.1	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1648)
DUF1125	PF06563.11	gi|384434818|ref|YP_005644176.1|	-	0.075	12.9	0.8	0.25	11.3	0.5	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1125)
YhfC	PF10086.9	gi|384434818|ref|YP_005644176.1|	-	0.2	11.0	14.9	2.6	7.4	14.9	2.1	1	1	0	1	1	1	0	YhfC	intramembrane	metalloprotease
DUF2530	PF10745.9	gi|384434818|ref|YP_005644176.1|	-	0.62	10.3	5.9	6.5	7.1	0.7	2.7	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
MFS_1	PF07690.16	gi|384434819|ref|YP_005644177.1|	-	1.8e-17	63.3	72.1	6.8e-17	61.4	38.5	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
CbiZ	PF01955.18	gi|384434820|ref|YP_005644178.1|	-	4.9e-21	75.7	0.0	7.4e-21	75.1	0.0	1.3	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
AMP-binding_C_2	PF14535.6	gi|384434821|ref|YP_005644179.1|	-	2.1e-13	50.4	0.1	3.6e-13	49.6	0.1	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|384434821|ref|YP_005644179.1|	-	0.00098	17.8	0.1	0.002	16.8	0.1	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
DDE_Tnp_1	PF01609.21	gi|384434823|ref|YP_005644181.1|	-	7.9e-17	61.6	0.0	1e-16	61.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Amidohydro_2	PF04909.14	gi|384434824|ref|YP_005644182.1|	-	1.2e-32	113.9	0.3	1.4e-32	113.7	0.3	1.0	1	0	0	1	1	1	1	Amidohydrolase
Sulfotransfer_3	PF13469.6	gi|384434824|ref|YP_005644182.1|	-	0.14	12.6	0.0	0.31	11.4	0.0	1.7	1	1	0	1	1	1	0	Sulfotransferase	family
FeS_assembly_P	PF01883.19	gi|384434825|ref|YP_005644183.1|	-	2.3e-12	46.9	0.0	3.5e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
Glyco_hydro_98C	PF08307.11	gi|384434825|ref|YP_005644183.1|	-	0.062	12.8	0.2	0.095	12.2	0.2	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	98	C-terminal	domain
TSNR_N	PF04705.12	gi|384434825|ref|YP_005644183.1|	-	0.12	12.4	0.0	0.17	12.0	0.0	1.2	1	0	0	1	1	1	0	Thiostrepton-resistance	methylase,	N	terminus
ADH_N	PF08240.12	gi|384434826|ref|YP_005644184.1|	-	4.4e-30	103.8	0.1	7.3e-30	103.1	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|384434826|ref|YP_005644184.1|	-	3.1e-22	78.9	0.2	4.7e-22	78.4	0.2	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|384434826|ref|YP_005644184.1|	-	2.7e-13	51.1	0.0	4.5e-13	50.4	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|384434826|ref|YP_005644184.1|	-	0.039	13.3	0.2	0.065	12.6	0.2	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Methyltransf_31	PF13847.6	gi|384434826|ref|YP_005644184.1|	-	0.043	13.6	0.1	0.1	12.4	0.1	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384434826|ref|YP_005644184.1|	-	0.047	14.4	0.0	0.1	13.3	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
TrkA_N	PF02254.18	gi|384434826|ref|YP_005644184.1|	-	0.074	13.3	0.3	0.13	12.5	0.3	1.5	1	0	0	1	1	1	0	TrkA-N	domain
TPP_enzyme_N	PF02776.18	gi|384434827|ref|YP_005644185.1|	-	1.5e-38	132.1	0.0	3.7e-38	130.8	0.0	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|384434827|ref|YP_005644185.1|	-	1.1e-18	67.3	0.0	2e-18	66.5	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_C	PF02775.21	gi|384434827|ref|YP_005644185.1|	-	4.6e-15	55.7	0.0	1.3e-14	54.2	0.0	1.8	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DUF2683	PF10884.8	gi|384434827|ref|YP_005644185.1|	-	0.17	12.2	1.1	0.83	10.0	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2683)
DUF772	PF05598.11	gi|384434828|ref|YP_005644186.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434828|ref|YP_005644186.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|384434829|ref|YP_005644187.1|	-	1.3e-177	589.9	3.0	1.5e-177	589.7	3.0	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434829|ref|YP_005644187.1|	-	4.7e-05	22.9	0.0	9.2e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434829|ref|YP_005644187.1|	-	0.00077	19.2	0.0	0.0014	18.3	0.0	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384434829|ref|YP_005644187.1|	-	0.046	13.4	0.1	0.088	12.5	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
PIN	PF01850.21	gi|384434830|ref|YP_005644188.1|	-	5.1e-17	62.5	0.4	5.9e-17	62.3	0.4	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|384434830|ref|YP_005644188.1|	-	1.1e-05	26.1	0.0	1.3e-05	25.9	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
DUF1217	PF06748.12	gi|384434830|ref|YP_005644188.1|	-	0.16	12.0	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1217)
VAPB_antitox	PF02697.14	gi|384434831|ref|YP_005644189.1|	-	0.012	16.4	9.3	0.11	13.2	9.3	2.1	1	1	0	1	1	1	0	Putative	antitoxin
OrfB_Zn_ribbon	PF07282.11	gi|384434832|ref|YP_005644190.1|	-	1.1e-26	92.5	0.1	2.1e-26	91.6	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434832|ref|YP_005644190.1|	-	2.8e-16	59.8	1.0	1.4e-15	57.6	0.0	2.4	2	1	1	3	3	3	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|384434832|ref|YP_005644190.1|	-	0.0016	18.0	0.1	0.49	10.0	0.0	2.4	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|384434832|ref|YP_005644190.1|	-	0.0022	17.3	1.5	0.15	11.5	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384434832|ref|YP_005644190.1|	-	0.11	12.7	0.2	0.22	11.6	0.2	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
MA3	PF02847.17	gi|384434832|ref|YP_005644190.1|	-	0.11	12.5	0.1	0.24	11.4	0.1	1.5	1	0	0	1	1	1	0	MA3	domain
zinc_ribbon_2	PF13240.6	gi|384434832|ref|YP_005644190.1|	-	0.42	10.4	3.4	13	5.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|384434832|ref|YP_005644190.1|	-	0.89	9.5	3.5	4.2	7.4	0.3	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
DUF1610	PF07754.11	gi|384434832|ref|YP_005644190.1|	-	5.2	7.1	6.4	0.83	9.7	2.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Synapsin_N	PF10581.9	gi|384434832|ref|YP_005644190.1|	-	6.8	6.7	6.1	6.8	6.7	1.4	2.9	3	0	0	3	3	3	0	Synapsin	N-terminal
SWIM	PF04434.17	gi|384434833|ref|YP_005644191.1|	-	9.7e-07	28.3	0.2	2.6e-06	27.0	0.1	1.8	2	0	0	2	2	2	1	SWIM	zinc	finger
MazE_antitoxin	PF04014.18	gi|384434834|ref|YP_005644192.1|	-	1.4e-15	56.8	0.9	1.9e-15	56.4	0.9	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|384434834|ref|YP_005644192.1|	-	1.5e-05	25.4	0.2	2.2e-05	24.8	0.2	1.3	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
SymE_toxin	PF08845.10	gi|384434834|ref|YP_005644192.1|	-	0.069	13.2	0.3	0.12	12.4	0.3	1.4	1	0	0	1	1	1	0	Toxin	SymE,	type	I	toxin-antitoxin	system
PIN	PF01850.21	gi|384434835|ref|YP_005644193.1|	-	2.1e-18	67.0	1.3	2.5e-18	66.7	1.3	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_2	PF10130.9	gi|384434835|ref|YP_005644193.1|	-	0.013	15.8	0.5	0.019	15.2	0.5	1.2	1	0	0	1	1	1	0	PIN	domain
Resolvase	PF00239.21	gi|384434836|ref|YP_005644194.1|	-	9.2e-20	71.2	0.1	1.2e-19	70.9	0.1	1.1	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384434836|ref|YP_005644194.1|	-	4.7e-11	42.7	0.0	9e-11	41.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384434836|ref|YP_005644194.1|	-	1.6e-08	34.5	0.1	3.2e-08	33.5	0.1	1.5	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384434836|ref|YP_005644194.1|	-	2.2e-06	27.3	0.0	3.9e-06	26.5	0.0	1.4	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384434836|ref|YP_005644194.1|	-	0.00028	20.7	0.1	0.0013	18.5	0.0	2.1	2	0	0	2	2	2	1	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.6	gi|384434836|ref|YP_005644194.1|	-	0.016	15.0	0.0	0.044	13.6	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
Sigma70_ner	PF04546.13	gi|384434836|ref|YP_005644194.1|	-	0.027	14.4	0.3	0.054	13.4	0.3	1.5	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
CLP1_P	PF16575.5	gi|384434836|ref|YP_005644194.1|	-	0.03	14.1	0.2	0.053	13.3	0.0	1.4	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AbiEi_4	PF13338.6	gi|384434836|ref|YP_005644194.1|	-	0.04	14.1	0.0	0.087	13.0	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_24	PF13412.6	gi|384434836|ref|YP_005644194.1|	-	0.059	12.9	0.0	0.15	11.6	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.6	gi|384434836|ref|YP_005644194.1|	-	0.07	13.2	0.0	0.48	10.5	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn	helix
OrfB_Zn_ribbon	PF07282.11	gi|384434837|ref|YP_005644195.1|	-	2e-22	78.9	0.1	4.5e-22	77.7	0.1	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434837|ref|YP_005644195.1|	-	2.6e-17	63.1	2.9	4.3e-17	62.4	0.0	2.4	2	1	0	2	2	2	1	Probable	transposase
FAM76	PF16046.5	gi|384434837|ref|YP_005644195.1|	-	0.58	9.5	3.3	0.19	11.1	0.2	1.7	2	0	0	2	2	2	0	FAM76	protein
Zn_Tnp_IS1595	PF12760.7	gi|384434837|ref|YP_005644195.1|	-	1.2	9.2	3.4	2.4	8.2	3.4	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF2833	PF11090.8	gi|384434837|ref|YP_005644195.1|	-	1.5	9.3	3.9	3.7	8.0	0.3	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2833)
zinc_ribbon_2	PF13240.6	gi|384434837|ref|YP_005644195.1|	-	2.1	8.2	5.0	9.6	6.1	5.2	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Hydantoinase_B	PF02538.14	gi|384434838|ref|YP_005644196.1|	-	3.7e-160	533.7	0.0	4.3e-160	533.6	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|384434839|ref|YP_005644197.1|	-	1.5e-101	339.5	0.2	2.8e-100	335.3	0.0	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|384434839|ref|YP_005644197.1|	-	1.7e-57	194.0	1.2	4.9e-57	192.5	0.5	2.0	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
BcrAD_BadFG	PF01869.20	gi|384434839|ref|YP_005644197.1|	-	0.0069	15.9	0.0	2.7	7.4	0.0	2.6	2	1	0	2	2	2	2	BadF/BadG/BcrA/BcrD	ATPase	family
MutL	PF13941.6	gi|384434839|ref|YP_005644197.1|	-	0.07	11.7	0.1	6.3	5.3	0.0	2.4	2	0	0	2	2	2	0	MutL	protein
Apis_Csd	PF11671.8	gi|384434839|ref|YP_005644197.1|	-	0.07	13.1	1.2	11	6.0	0.1	3.2	3	0	0	3	3	3	0	Complementary	sex	determiner	protein
HTH_AsnC-type	PF13404.6	gi|384434840|ref|YP_005644198.1|	-	1.1e-11	44.3	1.5	2.1e-11	43.4	1.5	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|384434840|ref|YP_005644198.1|	-	2.4e-07	30.2	1.7	5.3e-07	29.1	1.7	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|384434840|ref|YP_005644198.1|	-	0.0084	16.1	0.1	0.013	15.4	0.1	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_11	PF08279.12	gi|384434840|ref|YP_005644198.1|	-	0.013	15.4	1.5	0.27	11.2	0.4	2.3	2	0	0	2	2	2	0	HTH	domain
Transp_cyt_pur	PF02133.15	gi|384434841|ref|YP_005644199.1|	-	8.8e-18	64.3	46.6	1.6e-17	63.4	46.6	1.5	1	1	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
MFS_1	PF07690.16	gi|384434842|ref|YP_005644200.1|	-	0.0087	15.0	7.8	0.011	14.7	7.8	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
DUF917	PF06032.12	gi|384434843|ref|YP_005644201.1|	-	1.1e-113	379.7	0.0	1.2e-113	379.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF917)
Hydant_A_N	PF05378.13	gi|384434844|ref|YP_005644202.1|	-	1.7e-39	135.3	4.1	3.8e-38	131.0	0.2	2.9	2	1	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
Hydantoinase_A	PF01968.18	gi|384434844|ref|YP_005644202.1|	-	3.2e-24	85.7	7.7	2.7e-21	76.1	0.6	4.0	4	0	0	4	4	4	2	Hydantoinase/oxoprolinase
MutL	PF13941.6	gi|384434844|ref|YP_005644202.1|	-	1.2e-07	30.7	0.5	0.0058	15.3	0.2	2.5	2	0	0	2	2	2	2	MutL	protein
BcrAD_BadFG	PF01869.20	gi|384434844|ref|YP_005644202.1|	-	0.00034	20.2	5.7	0.00047	19.7	0.5	2.9	2	1	1	3	3	3	1	BadF/BadG/BcrA/BcrD	ATPase	family
FtsA	PF14450.6	gi|384434844|ref|YP_005644202.1|	-	0.00034	21.0	5.2	0.92	10.0	0.1	3.7	2	2	1	3	3	3	2	Cell	division	protein	FtsA
ROK	PF00480.20	gi|384434844|ref|YP_005644202.1|	-	0.014	14.9	0.5	0.035	13.6	0.2	1.9	2	0	0	2	2	2	0	ROK	family
DEDD_Tnp_IS110	PF01548.17	gi|384434844|ref|YP_005644202.1|	-	0.079	12.8	0.1	0.16	11.8	0.1	1.5	1	0	0	1	1	1	0	Transposase
DUF3509	PF12021.8	gi|384434844|ref|YP_005644202.1|	-	0.1	12.3	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3509)
StbA	PF06406.11	gi|384434844|ref|YP_005644202.1|	-	0.21	10.8	2.2	2.6	7.2	0.0	2.8	3	0	0	3	3	3	0	StbA	protein
DUF917	PF06032.12	gi|384434845|ref|YP_005644203.1|	-	4.2e-88	295.5	0.0	4.9e-88	295.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF917)
OrfB_Zn_ribbon	PF07282.11	gi|384434846|ref|YP_005644204.1|	-	1.2e-26	92.4	0.1	2.1e-26	91.6	0.1	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434846|ref|YP_005644204.1|	-	8.3e-18	64.7	1.1	3.9e-17	62.6	0.0	2.4	2	1	1	3	3	3	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|384434846|ref|YP_005644204.1|	-	0.0015	18.0	0.1	0.49	9.9	0.0	2.4	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|384434846|ref|YP_005644204.1|	-	0.0022	17.3	1.5	0.15	11.5	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384434846|ref|YP_005644204.1|	-	0.1	12.7	0.2	0.23	11.6	0.2	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|384434846|ref|YP_005644204.1|	-	0.42	10.4	3.4	13	5.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|384434846|ref|YP_005644204.1|	-	0.88	9.5	3.5	4.3	7.3	0.3	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
Synapsin_N	PF10581.9	gi|384434846|ref|YP_005644204.1|	-	2.5	8.1	4.0	6.9	6.7	1.4	2.5	2	0	0	2	2	2	0	Synapsin	N-terminal
DUF1610	PF07754.11	gi|384434846|ref|YP_005644204.1|	-	5.4	7.1	6.4	0.84	9.7	2.3	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
NTP_transf_2	PF01909.23	gi|384434847|ref|YP_005644205.1|	-	2.9e-10	40.3	0.3	3.7e-10	39.9	0.3	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384434847|ref|YP_005644205.1|	-	5.5e-10	39.2	0.2	7.1e-10	38.8	0.2	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
DUF294	PF03445.13	gi|384434847|ref|YP_005644205.1|	-	0.082	12.7	0.0	0.1	12.4	0.0	1.1	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.14	gi|384434848|ref|YP_005644206.1|	-	1e-33	115.9	0.0	1.2e-33	115.7	0.0	1.0	1	0	0	1	1	1	1	HEPN	domain
DDE_Tnp_1	PF01609.21	gi|384434851|ref|YP_005644209.1|	-	6.6e-12	45.5	0.2	1e-11	44.9	0.2	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Transposase_mut	PF00872.18	gi|384434852|ref|YP_005644210.1|	-	2.6e-13	49.6	1.6	3.7e-08	32.6	0.2	2.2	1	1	0	2	2	2	2	Transposase,	Mutator	family
DDE_Tnp_IS66	PF03050.14	gi|384434852|ref|YP_005644210.1|	-	0.061	12.8	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	Transposase	IS66	family
MULE	PF10551.9	gi|384434852|ref|YP_005644210.1|	-	0.12	12.8	0.0	0.23	11.9	0.0	1.5	1	0	0	1	1	1	0	MULE	transposase	domain
DDE_Tnp_1	PF01609.21	gi|384434854|ref|YP_005644212.1|	-	8e-17	61.6	0.0	1e-16	61.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
GATase_4	PF13230.6	gi|384434855|ref|YP_005644213.1|	-	5.3e-06	25.5	0.0	7.8e-06	25.0	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_6	PF13522.6	gi|384434855|ref|YP_005644213.1|	-	6.1e-06	26.5	0.0	4.4e-05	23.7	0.0	2.1	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
SMG1	PF15785.5	gi|384434859|ref|YP_005644217.1|	-	0.12	10.7	0.2	0.19	10.1	0.1	1.3	1	1	0	1	1	1	0	Serine/threonine-protein	kinase	smg-1
Cu_amine_oxid	PF01179.20	gi|384434860|ref|YP_005644218.1|	-	4.6e-141	470.4	0.0	6e-141	470.1	0.0	1.1	1	0	0	1	1	1	1	Copper	amine	oxidase,	enzyme	domain
Cu_amine_oxidN3	PF02728.16	gi|384434860|ref|YP_005644218.1|	-	2.9e-15	56.5	0.0	5.5e-15	55.6	0.0	1.5	1	0	0	1	1	1	1	Copper	amine	oxidase,	N3	domain
Cu_amine_oxidN2	PF02727.16	gi|384434860|ref|YP_005644218.1|	-	8.2e-10	38.8	0.4	1.4e-09	38.1	0.4	1.4	1	0	0	1	1	1	1	Copper	amine	oxidase,	N2	domain
AA_permease	PF00324.21	gi|384434861|ref|YP_005644219.1|	-	1.6e-26	92.9	59.5	2.2e-26	92.5	59.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.6	gi|384434861|ref|YP_005644219.1|	-	6.2e-25	87.9	62.4	1.1e-24	87.1	62.3	1.3	1	1	0	1	1	1	1	Amino	acid	permease
DDE_3	PF13358.6	gi|384434862|ref|YP_005644220.1|	-	6.9e-20	71.3	0.0	4.2e-19	68.7	0.0	2.3	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_29	PF13551.6	gi|384434862|ref|YP_005644220.1|	-	1.1e-14	54.2	0.0	2.3e-14	53.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384434862|ref|YP_005644220.1|	-	8.8e-12	44.5	0.3	3.4e-11	42.6	0.0	2.2	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384434862|ref|YP_005644220.1|	-	6e-10	39.1	1.0	1e-09	38.3	0.1	2.0	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_32	PF13565.6	gi|384434862|ref|YP_005644220.1|	-	7.9e-07	29.6	0.1	1e-05	26.1	0.1	2.5	1	1	1	2	2	2	1	Homeodomain-like	domain
Terminase_5	PF06056.12	gi|384434862|ref|YP_005644220.1|	-	2.4e-06	27.3	0.1	4.3e-06	26.5	0.1	1.5	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_17	PF12728.7	gi|384434862|ref|YP_005644220.1|	-	0.00016	21.8	0.1	0.00016	21.8	0.1	3.1	3	1	1	4	4	2	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|384434862|ref|YP_005644220.1|	-	0.00031	20.4	0.0	0.00074	19.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|384434862|ref|YP_005644220.1|	-	0.00047	20.2	0.9	0.0008	19.4	0.1	1.9	2	0	0	2	2	1	1	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_IS630	PF01710.16	gi|384434862|ref|YP_005644220.1|	-	0.00091	19.3	3.6	0.0021	18.1	3.6	1.7	1	0	0	1	1	1	1	Transposase
MarR	PF01047.22	gi|384434862|ref|YP_005644220.1|	-	0.0013	18.6	0.0	0.0051	16.7	0.0	1.9	2	0	0	2	2	1	1	MarR	family
HTH_33	PF13592.6	gi|384434862|ref|YP_005644220.1|	-	0.0014	18.3	0.3	0.0071	16.0	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn	helix
TnsD	PF15978.5	gi|384434862|ref|YP_005644220.1|	-	0.0037	16.3	1.3	0.0049	15.9	1.3	1.1	1	0	0	1	1	1	1	Tn7-like	transposition	protein	D
HTH_40	PF14493.6	gi|384434862|ref|YP_005644220.1|	-	0.0038	17.6	0.6	0.0067	16.9	0.4	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|384434862|ref|YP_005644220.1|	-	0.0048	16.5	0.0	0.012	15.3	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
TrmB	PF01978.19	gi|384434862|ref|YP_005644220.1|	-	0.013	15.4	0.0	0.032	14.1	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
LZ_Tnp_IS481	PF13011.6	gi|384434862|ref|YP_005644220.1|	-	0.014	15.9	0.0	0.027	15.0	0.0	1.4	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
DDE_1	PF03184.19	gi|384434862|ref|YP_005644220.1|	-	0.04	13.6	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
Sigma54_DBD	PF04552.13	gi|384434862|ref|YP_005644220.1|	-	0.047	13.4	0.0	0.08	12.6	0.0	1.3	1	0	0	1	1	1	0	Sigma-54,	DNA	binding	domain
HTH_Tnp_1	PF01527.20	gi|384434862|ref|YP_005644220.1|	-	0.048	14.0	0.0	0.16	12.3	0.0	1.9	1	0	0	1	1	1	0	Transposase
HTH_Tnp_ISL3	PF13542.6	gi|384434862|ref|YP_005644220.1|	-	0.063	12.7	0.3	0.38	10.2	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Phage_terminase	PF10668.9	gi|384434862|ref|YP_005644220.1|	-	0.087	12.8	0.7	0.25	11.4	0.1	2.0	1	1	1	2	2	2	0	Phage	terminase	small	subunit
HTH_30	PF13556.6	gi|384434862|ref|YP_005644220.1|	-	0.18	11.7	0.4	0.69	9.8	0.0	2.1	1	1	1	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
rve	PF00665.26	gi|384434862|ref|YP_005644220.1|	-	0.19	11.9	0.0	0.34	11.1	0.0	1.4	1	0	0	1	1	1	0	Integrase	core	domain
HTH_36	PF13730.6	gi|384434862|ref|YP_005644220.1|	-	0.27	11.2	1.8	0.35	10.9	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
PIN	PF01850.21	gi|384434863|ref|YP_005644221.1|	-	3.2e-14	53.5	2.1	3.7e-14	53.3	2.1	1.0	1	0	0	1	1	1	1	PIN	domain
HHH_9	PF17674.1	gi|384434864|ref|YP_005644222.1|	-	0.13	13.2	0.3	0.57	11.1	0.3	1.8	1	1	0	1	1	1	0	HHH	domain
Transposase_20	PF02371.16	gi|384434865|ref|YP_005644223.1|	-	5.3e-23	81.1	0.0	1.4e-22	79.8	0.0	1.8	2	0	0	2	2	2	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384434865|ref|YP_005644223.1|	-	2.7e-06	27.3	0.0	7.4e-06	25.9	0.0	1.8	1	0	0	1	1	1	1	Transposase
VASP_tetra	PF08776.11	gi|384434866|ref|YP_005644224.1|	-	0.073	12.7	3.3	0.19	11.3	3.3	1.8	1	0	0	1	1	1	0	VASP	tetramerisation	domain
DUF4116	PF13475.6	gi|384434866|ref|YP_005644224.1|	-	0.24	11.1	6.8	0.47	10.2	0.0	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4116)
LigB	PF02900.18	gi|384434866|ref|YP_005644224.1|	-	0.26	10.3	0.0	0.44	9.6	0.0	1.3	1	0	0	1	1	1	0	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
AAA_15	PF13175.6	gi|384434867|ref|YP_005644225.1|	-	3.8e-17	63.1	7.2	7.7e-10	39.0	3.5	2.2	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|384434867|ref|YP_005644225.1|	-	4.2e-11	43.2	4.6	4.9e-05	23.3	0.5	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|384434867|ref|YP_005644225.1|	-	2.3e-08	34.8	1.5	3.1e-08	34.4	1.5	1.3	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|384434867|ref|YP_005644225.1|	-	4.6e-05	23.0	0.1	7.9e-05	22.2	0.1	1.5	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
ABC_tran	PF00005.27	gi|384434867|ref|YP_005644225.1|	-	0.00035	21.1	0.0	0.0006	20.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
DUF2813	PF11398.8	gi|384434867|ref|YP_005644225.1|	-	0.0093	15.3	0.0	1.4	8.1	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
AAA_27	PF13514.6	gi|384434867|ref|YP_005644225.1|	-	0.0094	15.6	0.0	0.018	14.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|384434867|ref|YP_005644225.1|	-	0.0095	15.7	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|384434867|ref|YP_005644225.1|	-	0.037	14.3	0.1	12	6.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|384434867|ref|YP_005644225.1|	-	0.058	13.5	0.0	0.15	12.1	0.0	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
DUF166	PF02593.14	gi|384434867|ref|YP_005644225.1|	-	0.12	12.0	0.2	1.2	8.6	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function
Cas_DxTHG	PF09455.10	gi|384434868|ref|YP_005644226.1|	-	0.00054	19.7	3.4	0.00074	19.2	3.4	1.2	1	0	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
hGDE_N	PF14699.6	gi|384434868|ref|YP_005644226.1|	-	0.056	13.6	0.5	0.33	11.1	0.0	2.3	3	0	0	3	3	3	0	N-terminal	domain	from	the	human	glycogen	debranching	enzyme
NusG_II	PF07009.11	gi|384434868|ref|YP_005644226.1|	-	0.064	13.5	4.2	0.52	10.5	0.6	2.5	1	1	2	3	3	3	0	NusG	domain	II
Cas_DxTHG	PF09455.10	gi|384434869|ref|YP_005644227.1|	-	2.4e-18	66.9	6.5	2.9e-18	66.6	6.5	1.0	1	0	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
4HB	PF17947.1	gi|384434869|ref|YP_005644227.1|	-	0.1	12.7	0.1	0.28	11.3	0.1	1.7	1	0	0	1	1	1	0	Four	helical	bundle	domain
PIN	PF01850.21	gi|384434870|ref|YP_005644228.1|	-	1.1e-12	48.5	0.2	1.3e-12	48.3	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
DUF3333	PF11812.8	gi|384434871|ref|YP_005644229.1|	-	0.024	14.8	0.1	0.03	14.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3333)
Cytidylate_kin2	PF13189.6	gi|384434871|ref|YP_005644229.1|	-	0.025	14.7	0.7	0.031	14.4	0.7	1.1	1	0	0	1	1	1	0	Cytidylate	kinase-like	family
RHH_1	PF01402.21	gi|384434871|ref|YP_005644229.1|	-	0.15	12.1	10.6	0.54	10.3	0.3	3.4	3	1	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Glycos_transf_1	PF00534.20	gi|384434872|ref|YP_005644230.1|	-	5.3e-17	61.9	0.0	1.1e-16	60.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|384434872|ref|YP_005644230.1|	-	1.1e-13	51.8	0.0	1.9e-13	51.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|384434872|ref|YP_005644230.1|	-	1.6e-06	28.3	0.1	2.4e-06	27.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|384434872|ref|YP_005644230.1|	-	4.6e-06	26.9	0.0	9e-06	26.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Gly-zipper_Omp	PF13488.6	gi|384434874|ref|YP_005644232.1|	-	0.18	11.8	10.7	0.32	11.0	10.8	1.4	1	1	0	1	1	1	0	Glycine	zipper
TraT	PF05818.12	gi|384434874|ref|YP_005644232.1|	-	0.33	10.6	2.6	0.56	9.9	2.6	1.3	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
DUF4883	PF16224.5	gi|384434875|ref|YP_005644233.1|	-	0.095	12.9	1.0	0.18	12.1	0.8	1.5	1	1	0	1	1	1	0	DOmain	of	unknown	function	(DUF4883)
DDE_3	PF13358.6	gi|384434877|ref|YP_005644235.1|	-	6.6e-19	68.1	0.0	8.1e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|384434877|ref|YP_005644235.1|	-	0.091	13.0	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
DDE_1	PF03184.19	gi|384434877|ref|YP_005644235.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384434878|ref|YP_005644236.1|	-	1.6e-15	56.5	0.3	3.6e-14	52.1	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384434878|ref|YP_005644236.1|	-	6.1e-08	32.2	0.1	2.7e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384434878|ref|YP_005644236.1|	-	3.8e-07	30.3	1.3	5.7e-07	29.8	0.2	1.8	2	0	0	2	2	2	1	Transposase
HTH_28	PF13518.6	gi|384434878|ref|YP_005644236.1|	-	6e-07	29.5	0.0	2.4e-06	27.6	0.0	2.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384434878|ref|YP_005644236.1|	-	4e-06	26.9	0.8	8.9e-05	22.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384434878|ref|YP_005644236.1|	-	6.2e-06	26.2	2.8	2.1e-05	24.5	2.8	1.8	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384434878|ref|YP_005644236.1|	-	6.8e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384434878|ref|YP_005644236.1|	-	0.00012	22.6	0.0	0.0004	21.0	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384434878|ref|YP_005644236.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384434878|ref|YP_005644236.1|	-	0.00079	19.6	0.1	0.0018	18.4	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384434878|ref|YP_005644236.1|	-	0.0055	16.4	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384434878|ref|YP_005644236.1|	-	0.0099	16.0	1.6	0.052	13.7	0.1	2.5	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384434878|ref|YP_005644236.1|	-	0.01	14.9	0.1	0.014	14.5	0.1	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384434878|ref|YP_005644236.1|	-	0.01	15.8	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384434878|ref|YP_005644236.1|	-	0.017	15.2	0.1	0.061	13.4	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384434878|ref|YP_005644236.1|	-	0.021	14.2	0.1	0.066	12.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CENP-B_N	PF04218.13	gi|384434878|ref|YP_005644236.1|	-	0.027	14.1	0.0	0.069	12.8	0.0	1.7	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
MerR_1	PF13411.6	gi|384434878|ref|YP_005644236.1|	-	0.03	14.4	0.5	0.14	12.3	0.0	2.3	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|384434878|ref|YP_005644236.1|	-	0.072	13.2	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384434878|ref|YP_005644236.1|	-	0.13	11.9	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DDE_Tnp_2	PF04693.12	gi|384434879|ref|YP_005644237.1|	-	1.5e-102	343.2	2.9	1.8e-102	342.9	2.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434879|ref|YP_005644237.1|	-	1.8e-05	24.2	0.0	2.3e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DUF4736	PF15883.5	gi|384434879|ref|YP_005644237.1|	-	0.049	13.3	0.0	0.091	12.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
ADH_zinc_N	PF00107.26	gi|384434879|ref|YP_005644237.1|	-	0.14	12.2	0.0	0.21	11.6	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
MarR_2	PF12802.7	gi|384434879|ref|YP_005644237.1|	-	0.16	11.8	0.1	0.3	11.0	0.1	1.5	1	0	0	1	1	1	0	MarR	family
Polysacc_synt_3	PF13440.6	gi|384434880|ref|YP_005644238.1|	-	4e-09	36.1	10.6	4e-09	36.1	10.6	3.1	2	2	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|384434880|ref|YP_005644238.1|	-	1.9e-08	34.1	32.1	1.9e-08	34.1	32.1	2.6	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|384434880|ref|YP_005644238.1|	-	0.00033	20.7	16.7	0.00033	20.7	16.7	3.9	1	1	3	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
dTDP_sugar_isom	PF00908.17	gi|384434881|ref|YP_005644239.1|	-	4.8e-54	182.6	0.0	5.9e-54	182.3	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
RmlD_sub_bind	PF04321.17	gi|384434882|ref|YP_005644240.1|	-	2.2e-56	191.1	0.0	2.6e-56	190.8	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|384434882|ref|YP_005644240.1|	-	6e-16	58.6	0.0	8.3e-16	58.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|384434882|ref|YP_005644240.1|	-	1.1e-10	41.4	0.1	2.7e-10	40.2	0.1	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|384434882|ref|YP_005644240.1|	-	7.4e-07	28.6	0.8	8.8e-06	25.1	0.3	2.6	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|384434882|ref|YP_005644240.1|	-	6.7e-06	25.5	0.1	2e-05	23.9	0.1	1.7	1	1	0	1	1	1	1	Male	sterility	protein
Semialdhyde_dh	PF01118.24	gi|384434882|ref|YP_005644240.1|	-	0.013	16.0	0.0	0.023	15.1	0.0	1.5	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NTP_transferase	PF00483.23	gi|384434883|ref|YP_005644241.1|	-	2.3e-50	171.5	0.0	2.8e-50	171.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|384434883|ref|YP_005644241.1|	-	2.1e-09	38.0	0.0	2.8e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|384434883|ref|YP_005644241.1|	-	0.00015	21.3	4.7	0.38	10.6	0.0	5.0	2	1	2	4	4	4	3	Bacterial	transferase	hexapeptide	(six	repeats)
Fucokinase	PF07959.12	gi|384434883|ref|YP_005644241.1|	-	0.0016	17.4	0.0	0.0034	16.4	0.0	1.5	2	0	0	2	2	2	1	L-fucokinase
DUF4954	PF16314.5	gi|384434883|ref|YP_005644241.1|	-	0.047	11.8	1.4	0.067	11.3	1.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
IspD	PF01128.19	gi|384434883|ref|YP_005644241.1|	-	0.068	12.9	0.0	0.12	12.1	0.0	1.4	1	1	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
GDP_Man_Dehyd	PF16363.5	gi|384434884|ref|YP_005644242.1|	-	6.7e-62	209.8	0.0	8.9e-62	209.4	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|384434884|ref|YP_005644242.1|	-	1.4e-59	201.5	0.0	1.7e-59	201.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|384434884|ref|YP_005644242.1|	-	2.1e-15	56.6	0.0	2.4e-15	56.4	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|384434884|ref|YP_005644242.1|	-	2.3e-15	56.4	0.0	3e-15	56.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|384434884|ref|YP_005644242.1|	-	5.5e-13	48.7	0.0	1.7e-12	47.1	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|384434884|ref|YP_005644242.1|	-	2.8e-12	46.4	1.7	4.4e-11	42.5	0.2	2.7	1	1	0	2	2	2	1	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|384434884|ref|YP_005644242.1|	-	4.5e-05	23.4	0.0	6.4e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
adh_short	PF00106.25	gi|384434884|ref|YP_005644242.1|	-	0.00035	20.1	1.3	0.0065	15.9	1.3	2.3	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.13	gi|384434884|ref|YP_005644242.1|	-	0.0021	17.7	0.4	0.047	13.2	0.4	2.3	1	1	0	1	1	1	1	NmrA-like	family
Sacchrp_dh_NADP	PF03435.18	gi|384434884|ref|YP_005644242.1|	-	0.012	15.9	0.1	0.023	14.9	0.1	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_3	PF03447.16	gi|384434884|ref|YP_005644242.1|	-	0.021	15.5	0.0	0.033	14.8	0.0	1.4	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
MG2	PF01835.19	gi|384434884|ref|YP_005644242.1|	-	0.082	13.4	0.0	0.15	12.6	0.0	1.4	1	0	0	1	1	1	0	MG2	domain
2-Hacid_dh_C	PF02826.19	gi|384434884|ref|YP_005644242.1|	-	0.12	11.7	0.0	0.21	11.0	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Polysacc_synt	PF01943.17	gi|384434885|ref|YP_005644243.1|	-	7.1e-07	28.9	30.3	7.1e-07	28.9	30.3	2.3	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
DDE_Tnp_1	PF01609.21	gi|384434886|ref|YP_005644244.1|	-	6.5e-12	45.6	0.2	1e-11	44.9	0.2	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Methyltransf_21	PF05050.12	gi|384434887|ref|YP_005644245.1|	-	1.6e-13	51.1	0.0	2.1e-13	50.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
DUF3653	PF12375.8	gi|384434887|ref|YP_005644245.1|	-	0.024	14.7	0.0	0.079	13.1	0.0	1.8	2	0	0	2	2	2	0	Phage	protein
DDE_Tnp_1	PF01609.21	gi|384434888|ref|YP_005644246.1|	-	6.1e-15	55.4	0.0	1.2e-14	54.5	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|384434889|ref|YP_005644247.1|	-	7.5e-14	51.9	0.4	1e-13	51.5	0.4	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|384434889|ref|YP_005644247.1|	-	7.3e-08	32.7	0.0	2e-07	31.3	0.0	1.7	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF4298	PF14131.6	gi|384434889|ref|YP_005644247.1|	-	0.049	13.6	0.9	0.23	11.4	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Methyltransf_23	PF13489.6	gi|384434890|ref|YP_005644248.1|	-	6e-11	42.5	0.0	8.3e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|384434890|ref|YP_005644248.1|	-	1.1e-09	38.8	0.0	2.7e-09	37.5	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384434890|ref|YP_005644248.1|	-	3.8e-07	30.8	0.0	2e-06	28.5	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384434890|ref|YP_005644248.1|	-	1.2e-05	25.1	0.0	7.7e-05	22.5	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384434890|ref|YP_005644248.1|	-	0.0002	22.0	0.0	0.0016	19.1	0.0	2.2	1	1	1	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384434890|ref|YP_005644248.1|	-	0.027	13.8	0.1	0.043	13.2	0.1	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
DDE_Tnp_1	PF01609.21	gi|384434893|ref|YP_005644251.1|	-	8e-17	61.6	0.0	1e-16	61.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Glycos_transf_2	PF00535.26	gi|384434895|ref|YP_005644253.1|	-	1.2e-05	25.1	0.1	1.3e-05	25.1	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|384434895|ref|YP_005644253.1|	-	0.0009	19.2	0.0	0.00096	19.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|384434897|ref|YP_005644255.1|	-	2.9e-12	46.7	0.9	4.6e-12	46.1	0.9	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|384434897|ref|YP_005644255.1|	-	8.2e-05	22.6	0.0	0.00013	22.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|384434897|ref|YP_005644255.1|	-	0.0011	18.5	1.8	0.002	17.7	1.8	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.26	gi|384434898|ref|YP_005644256.1|	-	7.9e-32	110.4	0.9	9.5e-32	110.1	0.3	1.4	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|384434898|ref|YP_005644256.1|	-	2.4e-15	57.0	0.0	3.7e-15	56.4	0.0	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|384434898|ref|YP_005644256.1|	-	7.9e-11	41.9	0.3	1.1e-10	41.4	0.3	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|384434898|ref|YP_005644256.1|	-	0.00021	21.8	0.2	0.00052	20.5	0.1	1.8	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.6	gi|384434898|ref|YP_005644256.1|	-	0.0005	20.0	0.1	0.0015	18.5	0.1	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_5	PF13712.6	gi|384434898|ref|YP_005644256.1|	-	0.0015	18.3	0.2	0.002	17.8	0.2	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family
Glyco_transf_21	PF13506.6	gi|384434898|ref|YP_005644256.1|	-	0.082	12.4	0.0	0.25	10.8	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferase	family	21
Glyco_transf_49	PF13896.6	gi|384434898|ref|YP_005644256.1|	-	0.16	11.3	0.1	0.22	10.9	0.1	1.2	1	0	0	1	1	1	0	Glycosyl-transferase	for	dystroglycan
Glycos_transf_2	PF00535.26	gi|384434899|ref|YP_005644257.1|	-	4.6e-06	26.6	0.1	8.6e-06	25.7	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DDE_Tnp_1	PF01609.21	gi|384434900|ref|YP_005644258.1|	-	1.8e-16	60.4	0.0	2.3e-16	60.1	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|384434901|ref|YP_005644259.1|	-	2.6e-177	588.9	1.6	3e-177	588.7	1.6	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434901|ref|YP_005644259.1|	-	3.7e-05	23.2	0.0	7.1e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434901|ref|YP_005644259.1|	-	0.0013	18.5	0.0	0.002	17.8	0.0	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384434901|ref|YP_005644259.1|	-	0.047	13.4	0.1	0.088	12.5	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
Methyltransf_21	PF05050.12	gi|384434902|ref|YP_005644260.1|	-	1.3e-10	41.6	0.3	1.4e-10	41.4	0.3	1.1	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Bac_RepA_C	PF18008.1	gi|384434903|ref|YP_005644261.1|	-	0.016	15.6	0.3	0.021	15.1	0.3	1.2	1	0	0	1	1	1	0	Replication	initiator	protein	A	C-terminal	domain
MscL	PF01741.18	gi|384434905|ref|YP_005644263.1|	-	0.095	13.0	1.6	0.11	12.8	1.6	1.3	1	1	0	1	1	1	0	Large-conductance	mechanosensitive	channel,	MscL
PhoR	PF11808.8	gi|384434905|ref|YP_005644263.1|	-	0.4	11.1	3.6	9.7	6.7	3.6	2.1	1	1	1	2	2	2	0	Phosphate	regulon	sensor	protein	PhoR
Coagulase	PF08764.10	gi|384434906|ref|YP_005644264.1|	-	0.047	13.9	0.1	0.047	13.9	0.1	1.0	1	0	0	1	1	1	0	Staphylococcus	aureus	coagulase
Transposase_20	PF02371.16	gi|384434909|ref|YP_005644267.1|	-	1e-26	93.1	0.0	1.8e-26	92.2	0.0	1.5	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384434909|ref|YP_005644267.1|	-	2.7e-15	56.6	0.0	5.3e-15	55.6	0.0	1.5	1	0	0	1	1	1	1	Transposase
GDP_Man_Dehyd	PF16363.5	gi|384434910|ref|YP_005644268.1|	-	1.1e-43	149.9	0.1	1.3e-43	149.7	0.1	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|384434910|ref|YP_005644268.1|	-	6.7e-40	137.1	0.1	8.6e-40	136.7	0.1	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_4	PF07993.12	gi|384434910|ref|YP_005644268.1|	-	1.5e-07	30.8	0.2	8.8e-07	28.3	0.2	1.9	1	1	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|384434910|ref|YP_005644268.1|	-	8.9e-07	28.3	0.0	1.2e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|384434910|ref|YP_005644268.1|	-	1.2e-06	27.8	0.1	2.1e-06	27.0	0.1	1.4	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|384434910|ref|YP_005644268.1|	-	4.7e-06	26.0	0.0	1.5e-05	24.3	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
AAA_15	PF13175.6	gi|384434912|ref|YP_005644270.1|	-	3.1e-21	76.5	5.9	1.1e-11	45.1	2.6	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_21	PF13304.6	gi|384434912|ref|YP_005644270.1|	-	1.2e-20	74.6	6.3	8.9e-20	71.7	6.3	2.1	1	1	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384434912|ref|YP_005644270.1|	-	5.9e-12	45.5	3.7	2.9e-11	43.2	3.7	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|384434912|ref|YP_005644270.1|	-	2.1e-06	28.4	2.3	2.1e-06	28.4	2.3	1.6	1	1	0	2	2	2	1	AAA	domain
DUF2813	PF11398.8	gi|384434912|ref|YP_005644270.1|	-	2.6e-05	23.7	1.8	0.0037	16.6	0.4	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2813)
AAA_13	PF13166.6	gi|384434912|ref|YP_005644270.1|	-	0.00013	20.7	1.1	0.0024	16.6	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|384434912|ref|YP_005644270.1|	-	0.00035	21.1	1.4	0.00062	20.3	0.2	2.0	2	1	0	2	2	2	1	ABC	transporter
AAA_22	PF13401.6	gi|384434912|ref|YP_005644270.1|	-	0.0056	16.9	0.1	4.1	7.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|384434912|ref|YP_005644270.1|	-	0.0085	15.3	0.0	0.13	11.4	0.0	2.1	2	0	0	2	2	2	1	NB-ARC	domain
AAA_29	PF13555.6	gi|384434912|ref|YP_005644270.1|	-	0.0095	15.7	0.0	0.018	14.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF166	PF02593.14	gi|384434912|ref|YP_005644270.1|	-	0.1	12.1	0.1	0.2	11.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function
DUF5461	PF17545.2	gi|384434912|ref|YP_005644270.1|	-	0.16	12.3	1.8	3.3	8.1	0.1	3.1	3	1	0	3	3	3	0	Family	of	unknown	function	(DUF5461)
FtsK_SpoIIIE	PF01580.18	gi|384434912|ref|YP_005644270.1|	-	0.19	11.1	0.1	0.48	9.7	0.0	1.6	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
PIN	PF01850.21	gi|384434914|ref|YP_005644272.1|	-	6.9e-17	62.1	0.9	8e-17	61.9	0.9	1.1	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|384434915|ref|YP_005644273.1|	-	1.4e-10	40.9	1.7	1.4e-10	40.9	1.7	1.4	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|384434915|ref|YP_005644273.1|	-	0.0025	18.2	0.1	0.011	16.1	0.1	1.8	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
FliMN_C	PF01052.20	gi|384434915|ref|YP_005644273.1|	-	0.039	14.0	0.1	0.063	13.3	0.1	1.5	1	0	0	1	1	1	0	Type	III	flagellar	switch	regulator	(C-ring)	FliN	C-term
Peptidase_M75	PF09375.10	gi|384434916|ref|YP_005644274.1|	-	0.00084	18.9	0.3	0.0011	18.5	0.3	1.1	1	0	0	1	1	1	1	Imelysin
Hemagglutinin	PF00509.18	gi|384434916|ref|YP_005644274.1|	-	0.0011	17.5	1.3	0.0015	17.0	1.3	1.2	1	0	0	1	1	1	1	Haemagglutinin
HSBP1	PF06825.12	gi|384434916|ref|YP_005644274.1|	-	0.0021	17.9	2.4	0.0052	16.6	0.7	2.2	2	0	0	2	2	2	1	Heat	shock	factor	binding	protein	1
DUF3583	PF12126.8	gi|384434916|ref|YP_005644274.1|	-	0.0053	16.3	0.9	0.0065	16.0	0.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3583)
DUF1664	PF07889.12	gi|384434916|ref|YP_005644274.1|	-	0.0056	16.7	1.2	0.28	11.2	1.2	2.2	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
DUF885	PF05960.11	gi|384434916|ref|YP_005644274.1|	-	0.0092	15.7	0.8	0.01	15.5	0.8	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF885)
GCN5L1	PF06320.13	gi|384434916|ref|YP_005644274.1|	-	0.014	15.5	1.2	0.03	14.5	0.7	1.7	1	1	0	1	1	1	0	GCN5-like	protein	1	(GCN5L1)
Mer2	PF09074.10	gi|384434916|ref|YP_005644274.1|	-	0.027	14.3	2.1	0.032	14.0	2.1	1.2	1	0	0	1	1	1	0	Mer2
ING	PF12998.7	gi|384434916|ref|YP_005644274.1|	-	0.028	15.0	5.7	0.039	14.5	5.1	1.5	1	1	1	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Vac_Fusion	PF02346.16	gi|384434916|ref|YP_005644274.1|	-	0.03	14.0	0.7	0.07	12.8	0.7	1.8	1	0	0	1	1	1	0	Chordopoxvirus	multifunctional	envelope	protein	A27
HLH	PF00010.26	gi|384434916|ref|YP_005644274.1|	-	0.033	14.1	0.8	0.12	12.4	0.2	2.2	2	0	0	2	2	2	0	Helix-loop-helix	DNA-binding	domain
DUF1870	PF08965.10	gi|384434916|ref|YP_005644274.1|	-	0.034	14.2	0.1	0.062	13.3	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1870)
Prefoldin_2	PF01920.20	gi|384434916|ref|YP_005644274.1|	-	0.034	14.1	3.2	0.35	10.9	3.2	2.3	1	1	0	1	1	1	0	Prefoldin	subunit
Fib_alpha	PF08702.10	gi|384434916|ref|YP_005644274.1|	-	0.064	13.5	4.7	0.087	13.0	4.7	1.2	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
MerR-DNA-bind	PF09278.11	gi|384434916|ref|YP_005644274.1|	-	0.075	13.6	0.8	0.14	12.7	0.2	1.8	2	0	0	2	2	1	0	MerR,	DNA	binding
SOAR	PF16533.5	gi|384434916|ref|YP_005644274.1|	-	0.082	12.9	1.3	0.35	10.8	1.2	1.9	1	1	1	2	2	2	0	STIM1	Orai1-activating	region
Phasin	PF05597.11	gi|384434916|ref|YP_005644274.1|	-	0.1	12.6	1.6	0.15	12.1	1.6	1.3	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF948	PF06103.11	gi|384434916|ref|YP_005644274.1|	-	0.12	12.6	0.2	0.64	10.3	0.2	2.3	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
CAF-1_p150	PF11600.8	gi|384434916|ref|YP_005644274.1|	-	0.13	12.0	8.2	0.14	11.8	8.2	1.2	1	0	0	1	1	1	0	Chromatin	assembly	factor	1	complex	p150	subunit,	N-terminal
Prefoldin	PF02996.17	gi|384434916|ref|YP_005644274.1|	-	0.16	11.9	9.0	0.19	11.7	0.7	2.8	1	1	1	2	2	2	0	Prefoldin	subunit
DUF16	PF01519.16	gi|384434916|ref|YP_005644274.1|	-	0.19	12.2	3.7	0.38	11.3	3.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
ISG65-75	PF11727.8	gi|384434916|ref|YP_005644274.1|	-	0.21	10.8	4.8	0.71	9.1	1.1	2.0	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
Prefoldin_3	PF13758.6	gi|384434916|ref|YP_005644274.1|	-	0.44	10.6	7.0	3.5	7.8	6.3	2.6	1	1	1	2	2	2	0	Prefoldin	subunit
CorA	PF01544.18	gi|384434916|ref|YP_005644274.1|	-	0.45	9.8	8.6	0.72	9.1	7.0	1.8	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
DUF2951	PF11166.8	gi|384434916|ref|YP_005644274.1|	-	3	8.1	12.7	1.4	9.2	2.8	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2951)
DoxA	PF07680.11	gi|384434917|ref|YP_005644275.1|	-	2.5e-36	124.5	0.2	3e-36	124.2	0.2	1.1	1	0	0	1	1	1	1	TQO	small	subunit	DoxA
DoxD	PF04173.13	gi|384434918|ref|YP_005644276.1|	-	2.1e-72	242.5	2.2	2.3e-72	242.3	2.2	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.12	gi|384434918|ref|YP_005644276.1|	-	1.8e-07	31.7	6.8	1.8e-07	31.7	6.8	2.1	2	1	0	2	2	2	1	DoxX
DoxX_3	PF13781.6	gi|384434918|ref|YP_005644276.1|	-	0.27	11.9	6.6	0.3	11.8	2.3	2.1	1	1	0	2	2	2	0	DoxX-like	family
MazE_antitoxin	PF04014.18	gi|384434919|ref|YP_005644277.1|	-	3.5e-11	42.8	4.2	3.5e-11	42.8	4.2	1.4	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
MraZ	PF02381.18	gi|384434919|ref|YP_005644277.1|	-	7.1e-06	25.9	0.3	0.0047	16.9	0.1	2.2	1	1	1	2	2	2	2	MraZ	protein,	putative	antitoxin-like
PrlF_antitoxin	PF15937.5	gi|384434919|ref|YP_005644277.1|	-	0.00035	20.9	0.1	0.00051	20.4	0.1	1.3	1	1	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
DUF104	PF01954.16	gi|384434919|ref|YP_005644277.1|	-	0.00092	19.6	6.4	0.0029	18.0	6.0	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF104
AbrB-like	PF14250.6	gi|384434919|ref|YP_005644277.1|	-	0.0029	17.6	0.0	0.004	17.2	0.0	1.2	1	0	0	1	1	1	1	AbrB-like	transcriptional	regulator
CTP-dep_RFKase	PF01982.16	gi|384434919|ref|YP_005644277.1|	-	0.055	13.6	0.4	0.2	11.8	0.1	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF120
PIN	PF01850.21	gi|384434920|ref|YP_005644278.1|	-	1.5e-17	64.2	1.1	1.7e-17	64.0	1.1	1.0	1	0	0	1	1	1	1	PIN	domain
DDE_3	PF13358.6	gi|384434921|ref|YP_005644279.1|	-	5.9e-19	68.3	0.0	7.1e-19	68.0	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|384434921|ref|YP_005644279.1|	-	0.11	12.7	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Integrase	core	domain
DDE_1	PF03184.19	gi|384434921|ref|YP_005644279.1|	-	0.12	12.0	0.0	0.19	11.3	0.0	1.4	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384434922|ref|YP_005644280.1|	-	1.6e-15	56.5	0.3	3.6e-14	52.1	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384434922|ref|YP_005644280.1|	-	6.1e-08	32.2	0.1	2.7e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384434922|ref|YP_005644280.1|	-	3.8e-07	30.3	1.3	5.7e-07	29.8	0.2	1.8	2	0	0	2	2	2	1	Transposase
HTH_28	PF13518.6	gi|384434922|ref|YP_005644280.1|	-	6e-07	29.5	0.0	2.4e-06	27.6	0.0	2.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384434922|ref|YP_005644280.1|	-	4e-06	26.9	0.8	8.9e-05	22.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384434922|ref|YP_005644280.1|	-	6.2e-06	26.2	2.8	2.1e-05	24.5	2.8	1.8	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384434922|ref|YP_005644280.1|	-	6.8e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384434922|ref|YP_005644280.1|	-	0.00012	22.6	0.0	0.0004	21.0	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384434922|ref|YP_005644280.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384434922|ref|YP_005644280.1|	-	0.00079	19.6	0.1	0.0018	18.4	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384434922|ref|YP_005644280.1|	-	0.0055	16.4	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384434922|ref|YP_005644280.1|	-	0.0099	16.0	1.6	0.052	13.7	0.1	2.5	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384434922|ref|YP_005644280.1|	-	0.01	14.9	0.1	0.014	14.5	0.1	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384434922|ref|YP_005644280.1|	-	0.01	15.8	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384434922|ref|YP_005644280.1|	-	0.017	15.2	0.1	0.061	13.4	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384434922|ref|YP_005644280.1|	-	0.021	14.2	0.1	0.066	12.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CENP-B_N	PF04218.13	gi|384434922|ref|YP_005644280.1|	-	0.027	14.1	0.0	0.069	12.8	0.0	1.7	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
MerR_1	PF13411.6	gi|384434922|ref|YP_005644280.1|	-	0.03	14.4	0.5	0.14	12.3	0.0	2.3	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|384434922|ref|YP_005644280.1|	-	0.072	13.2	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384434922|ref|YP_005644280.1|	-	0.13	11.9	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF16	PF01519.16	gi|384434923|ref|YP_005644281.1|	-	5.6e-11	42.8	28.4	0.0017	18.8	3.6	4.3	1	1	2	3	3	3	3	Protein	of	unknown	function	DUF16
DUF3972	PF13118.6	gi|384434923|ref|YP_005644281.1|	-	2.1e-10	41.1	19.3	0.0011	19.4	2.5	4.1	1	1	2	3	3	3	3	Protein	of	unknown	function	(DUF3972)
WEMBL	PF05701.11	gi|384434923|ref|YP_005644281.1|	-	5.1e-06	25.5	24.4	0.00012	20.9	12.2	2.1	1	1	1	2	2	2	2	Weak	chloroplast	movement	under	blue	light
AAA_13	PF13166.6	gi|384434923|ref|YP_005644281.1|	-	1.5e-05	23.9	19.3	0.00082	18.2	8.7	1.9	1	1	0	1	1	1	1	AAA	domain
Spc29	PF17082.5	gi|384434923|ref|YP_005644281.1|	-	3.7e-05	23.7	15.0	0.027	14.3	2.9	3.1	1	1	2	3	3	3	2	Spindle	Pole	Component	29
TMF_DNA_bd	PF12329.8	gi|384434923|ref|YP_005644281.1|	-	4.1e-05	23.5	30.6	0.087	12.8	7.9	4.1	1	1	2	4	4	4	3	TATA	element	modulatory	factor	1	DNA	binding
SlyX	PF04102.12	gi|384434923|ref|YP_005644281.1|	-	8.3e-05	23.1	19.9	0.18	12.5	1.0	4.4	1	1	3	4	4	4	4	SlyX
DUF3782	PF12644.7	gi|384434923|ref|YP_005644281.1|	-	8.8e-05	22.6	11.6	0.0002	21.4	0.1	4.5	1	1	1	2	2	1	1	Protein	of	unknown	function	(DUF3782)
DUF2383	PF09537.10	gi|384434923|ref|YP_005644281.1|	-	0.00023	21.5	10.4	0.16	12.3	1.0	3.7	1	1	1	3	3	3	2	Domain	of	unknown	function	(DUF2383)
Cast	PF10174.9	gi|384434923|ref|YP_005644281.1|	-	0.00045	18.6	19.6	0.0006	18.2	19.6	1.1	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
ADIP	PF11559.8	gi|384434923|ref|YP_005644281.1|	-	0.00055	20.1	16.1	0.13	12.4	4.7	2.5	1	1	1	2	2	2	2	Afadin-	and	alpha	-actinin-Binding
Fez1	PF06818.15	gi|384434923|ref|YP_005644281.1|	-	0.0006	20.3	18.0	0.038	14.5	6.3	2.3	1	1	1	2	2	2	2	Fez1
Fib_alpha	PF08702.10	gi|384434923|ref|YP_005644281.1|	-	0.00062	20.0	20.4	0.04	14.1	8.2	3.9	1	1	3	4	4	4	2	Fibrinogen	alpha/beta	chain	family
BRE1	PF08647.11	gi|384434923|ref|YP_005644281.1|	-	0.0012	18.9	18.4	0.14	12.2	2.9	2.9	1	1	0	2	2	2	2	BRE1	E3	ubiquitin	ligase
ATG16	PF08614.11	gi|384434923|ref|YP_005644281.1|	-	0.002	18.4	20.5	0.23	11.6	8.1	2.4	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
DUF812	PF05667.11	gi|384434923|ref|YP_005644281.1|	-	0.0021	17.1	21.6	0.0066	15.4	21.6	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
HOOK	PF05622.12	gi|384434923|ref|YP_005644281.1|	-	0.0027	15.9	22.2	0.01	14.1	22.2	1.7	1	1	0	1	1	1	1	HOOK	protein
Dimerisation	PF08100.11	gi|384434923|ref|YP_005644281.1|	-	0.003	17.5	0.0	1	9.5	0.0	3.1	3	0	0	3	3	2	1	Dimerisation	domain
ERM	PF00769.19	gi|384434923|ref|YP_005644281.1|	-	0.003	17.4	19.1	0.016	15.0	9.2	2.1	1	1	1	2	2	2	2	Ezrin/radixin/moesin	family
Protoglobin	PF11563.8	gi|384434923|ref|YP_005644281.1|	-	0.0033	17.3	1.0	0.038	13.9	0.1	2.5	1	1	1	2	2	2	1	Protoglobin
ATG_C	PF09333.11	gi|384434923|ref|YP_005644281.1|	-	0.0035	17.7	7.7	1.9	8.9	0.2	3.6	1	1	2	3	3	3	0	Autophagy-related	protein	C	terminal	domain
UPF0242	PF06785.11	gi|384434923|ref|YP_005644281.1|	-	0.0046	17.1	21.4	0.022	14.9	12.1	2.3	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
TPR_MLP1_2	PF07926.12	gi|384434923|ref|YP_005644281.1|	-	0.0071	16.4	22.2	0.13	12.3	5.0	3.1	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
SpecificRecomb	PF10136.9	gi|384434923|ref|YP_005644281.1|	-	0.0082	14.5	8.7	0.011	14.1	8.7	1.1	1	0	0	1	1	1	1	Site-specific	recombinase
HAP1_N	PF04849.13	gi|384434923|ref|YP_005644281.1|	-	0.011	14.9	21.7	0.48	9.6	20.4	2.4	1	1	1	2	2	2	0	HAP1	N-terminal	conserved	region
Lebercilin	PF15619.6	gi|384434923|ref|YP_005644281.1|	-	0.014	15.1	21.8	0.091	12.4	20.8	2.4	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Polbeta	PF18765.1	gi|384434923|ref|YP_005644281.1|	-	0.031	14.3	3.6	5.4	7.2	0.3	3.3	1	1	1	3	3	3	0	Polymerase	beta,	Nucleotidyltransferase
Corona_S2	PF01601.16	gi|384434923|ref|YP_005644281.1|	-	0.038	12.5	7.0	0.2	10.1	1.5	2.4	1	1	1	2	2	2	0	Coronavirus	S2	glycoprotein
DUF641	PF04859.12	gi|384434923|ref|YP_005644281.1|	-	0.04	14.3	18.7	2.2	8.6	3.2	3.3	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
ING	PF12998.7	gi|384434923|ref|YP_005644281.1|	-	0.04	14.5	7.5	3	8.5	0.6	3.2	1	1	2	3	3	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Fusion_gly	PF00523.18	gi|384434923|ref|YP_005644281.1|	-	0.042	12.1	12.7	0.42	8.8	0.7	3.2	1	1	2	3	3	3	0	Fusion	glycoprotein	F0
TMPIT	PF07851.13	gi|384434923|ref|YP_005644281.1|	-	0.049	12.9	16.8	0.16	11.2	3.6	2.1	1	1	1	2	2	2	0	TMPIT-like	protein
HMMR_N	PF15905.5	gi|384434923|ref|YP_005644281.1|	-	0.057	12.9	22.9	0.25	10.7	10.4	2.2	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
CmlA_N	PF18456.1	gi|384434923|ref|YP_005644281.1|	-	0.06	12.6	9.3	0.35	10.2	1.5	2.6	1	1	1	2	2	2	0	Diiron	non-heme	beta-hydroxylase	N-terminal	domain
TEX13	PF15186.6	gi|384434923|ref|YP_005644281.1|	-	0.068	12.8	18.3	0.55	9.9	3.0	3.5	1	1	3	4	4	4	0	Testis-expressed	sequence	13	protein	family
Spc7	PF08317.11	gi|384434923|ref|YP_005644281.1|	-	0.07	12.0	24.3	0.58	9.0	12.5	2.3	1	1	1	2	2	2	0	Spc7	kinetochore	protein
US22	PF02393.16	gi|384434923|ref|YP_005644281.1|	-	0.07	13.4	0.0	4.3	7.6	0.0	3.1	1	1	0	1	1	1	0	US22	like
YkyA	PF10368.9	gi|384434923|ref|YP_005644281.1|	-	0.075	12.7	20.8	0.081	12.6	12.2	2.8	1	1	2	3	3	3	0	Putative	cell-wall	binding	lipoprotein
DUF948	PF06103.11	gi|384434923|ref|YP_005644281.1|	-	0.11	12.7	13.5	0.4	11.0	1.8	2.8	3	0	0	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
BCDHK_Adom3	PF10436.9	gi|384434923|ref|YP_005644281.1|	-	0.14	12.0	7.0	0.47	10.3	0.7	2.6	1	1	1	2	2	2	0	Mitochondrial	branched-chain	alpha-ketoacid	dehydrogenase	kinase
BORCS8	PF10167.9	gi|384434923|ref|YP_005644281.1|	-	0.18	11.8	11.6	1.9	8.4	4.5	3.2	1	1	0	2	2	2	0	BLOC-1-related	complex	sub-unit	8
Exo_endo_phos	PF03372.23	gi|384434923|ref|YP_005644281.1|	-	0.18	11.3	1.6	13	5.2	1.6	3.2	1	1	0	1	1	1	0	Endonuclease/Exonuclease/phosphatase	family
Prominin	PF05478.11	gi|384434923|ref|YP_005644281.1|	-	0.19	9.7	12.0	0.91	7.4	4.3	2.1	1	1	1	2	2	2	0	Prominin
Atg14	PF10186.9	gi|384434923|ref|YP_005644281.1|	-	0.22	10.6	21.2	0.94	8.5	6.5	2.1	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
ANAPC5	PF12862.7	gi|384434923|ref|YP_005644281.1|	-	0.23	11.6	2.7	48	4.1	0.1	4.0	1	1	2	4	4	4	0	Anaphase-promoting	complex	subunit	5
KASH_CCD	PF14662.6	gi|384434923|ref|YP_005644281.1|	-	0.25	11.1	25.0	0.27	11.1	13.9	2.3	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155	or	KASH
FliJ	PF02050.16	gi|384434923|ref|YP_005644281.1|	-	0.26	11.5	21.9	0.85	9.9	4.4	3.3	1	1	2	3	3	3	0	Flagellar	FliJ	protein
NPV_P10	PF05531.12	gi|384434923|ref|YP_005644281.1|	-	0.27	11.7	18.1	16	6.0	0.9	4.1	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF1664	PF07889.12	gi|384434923|ref|YP_005644281.1|	-	0.36	10.9	19.8	2.6	8.1	5.7	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Sbi-IV	PF11621.8	gi|384434923|ref|YP_005644281.1|	-	0.37	11.2	11.8	4.2	7.8	1.4	5.1	2	1	3	5	5	4	0	C3	binding	domain	4	of	IgG-bind	protein	SBI
TMF_TATA_bd	PF12325.8	gi|384434923|ref|YP_005644281.1|	-	0.4	10.9	21.6	0.91	9.8	4.4	3.1	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
Tcf25	PF04910.14	gi|384434923|ref|YP_005644281.1|	-	0.4	9.7	2.3	2.8	6.9	2.3	2.0	1	1	0	1	1	1	0	Transcriptional	repressor	TCF25
LemA	PF04011.12	gi|384434923|ref|YP_005644281.1|	-	0.44	10.4	10.2	1.1	9.1	1.2	2.6	1	1	1	2	2	2	0	LemA	family
DUF724	PF05266.14	gi|384434923|ref|YP_005644281.1|	-	0.45	10.3	21.1	1.5	8.6	5.8	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
YfhO	PF09586.10	gi|384434923|ref|YP_005644281.1|	-	0.69	8.1	1.8	0.82	7.8	1.8	1.1	1	0	0	1	1	1	0	Bacterial	membrane	protein	YfhO
DUF677	PF05055.12	gi|384434923|ref|YP_005644281.1|	-	0.91	8.4	19.6	0.18	10.7	8.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF677)
PI3K_P85_iSH2	PF16454.5	gi|384434923|ref|YP_005644281.1|	-	0.98	9.0	15.8	3.3	7.3	4.3	2.4	1	1	1	2	2	2	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
Spectrin	PF00435.21	gi|384434923|ref|YP_005644281.1|	-	0.98	9.9	18.7	6.1	7.4	6.5	2.8	1	1	2	3	3	3	0	Spectrin	repeat
GAS	PF13851.6	gi|384434923|ref|YP_005644281.1|	-	1.1	8.6	21.5	5	6.4	5.8	2.7	1	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
SKA1	PF07160.12	gi|384434923|ref|YP_005644281.1|	-	1.1	9.1	18.8	0.72	9.7	3.5	2.8	2	1	1	3	3	2	0	Spindle	and	kinetochore-associated	protein	1
DUF4472	PF14739.6	gi|384434923|ref|YP_005644281.1|	-	1.1	10.1	21.3	0.09	13.5	6.8	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4472)
Rab_bind	PF16704.5	gi|384434923|ref|YP_005644281.1|	-	1.1	9.3	5.3	0.41	10.7	0.6	2.5	2	1	1	3	3	1	0	Rab	binding	domain
Bacillus_HBL	PF05791.11	gi|384434923|ref|YP_005644281.1|	-	1.1	9.0	13.8	5.2	6.9	2.8	2.7	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
Sec20	PF03908.13	gi|384434923|ref|YP_005644281.1|	-	1.2	9.0	9.0	2.8	7.9	0.5	3.6	1	1	2	3	3	3	0	Sec20
GrpE	PF01025.19	gi|384434923|ref|YP_005644281.1|	-	1.2	8.7	18.3	3	7.5	3.3	3.7	2	1	2	4	4	4	0	GrpE
HMG_box_2	PF09011.10	gi|384434923|ref|YP_005644281.1|	-	1.3	9.7	8.6	15	6.3	0.3	4.1	1	1	4	5	5	5	0	HMG-box	domain
EPO_TPO	PF00758.18	gi|384434923|ref|YP_005644281.1|	-	1.4	9.0	7.6	7.2	6.6	0.5	3.0	1	1	3	4	4	3	0	Erythropoietin/thrombopoietin
XhlA	PF10779.9	gi|384434923|ref|YP_005644281.1|	-	1.5	9.1	14.5	12	6.2	0.8	4.0	1	1	1	4	4	3	0	Haemolysin	XhlA
DUF848	PF05852.11	gi|384434923|ref|YP_005644281.1|	-	1.5	8.9	18.3	4.7	7.3	6.0	2.8	2	1	1	3	3	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
CENP-Q	PF13094.6	gi|384434923|ref|YP_005644281.1|	-	1.6	8.9	17.9	3.4	7.8	4.0	3.0	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Vps51	PF08700.11	gi|384434923|ref|YP_005644281.1|	-	1.8	8.7	6.8	56	3.9	0.1	4.3	1	1	1	2	2	2	0	Vps51/Vps67
DUF4988	PF16378.5	gi|384434923|ref|YP_005644281.1|	-	2.2	7.9	15.2	1.3	8.6	0.5	3.6	2	1	2	4	4	3	0	Domain	of	unknown	function
DUF4094	PF13334.6	gi|384434923|ref|YP_005644281.1|	-	2.3	8.7	19.8	15	6.1	0.8	5.2	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4094)
TMEM192	PF14802.6	gi|384434923|ref|YP_005644281.1|	-	2.6	7.1	16.5	8.6	5.4	0.2	4.1	1	1	3	4	4	4	0	TMEM192	family
ISG65-75	PF11727.8	gi|384434923|ref|YP_005644281.1|	-	2.7	7.2	18.1	1.2	8.3	7.7	2.2	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
Med9	PF07544.13	gi|384434923|ref|YP_005644281.1|	-	2.8	8.1	19.7	3.9	7.6	0.4	4.2	1	1	3	4	4	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
KLRAQ	PF10205.9	gi|384434923|ref|YP_005644281.1|	-	3.1	8.1	21.4	4	7.7	7.8	2.9	1	1	2	3	3	3	0	Predicted	coiled-coil	domain-containing	protein
DUF3450	PF11932.8	gi|384434923|ref|YP_005644281.1|	-	3.2	7.0	20.6	1.2	8.3	5.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Syntaxin-6_N	PF09177.11	gi|384434923|ref|YP_005644281.1|	-	3.4	8.3	15.9	3.6	8.2	6.1	3.2	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
LXG	PF04740.12	gi|384434923|ref|YP_005644281.1|	-	3.5	7.3	15.7	4.5	6.9	1.1	3.9	1	1	1	3	3	3	0	LXG	domain	of	WXG	superfamily
DUF4201	PF13870.6	gi|384434923|ref|YP_005644281.1|	-	3.5	7.3	17.7	1.5	8.5	4.8	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Seryl_tRNA_N	PF02403.22	gi|384434923|ref|YP_005644281.1|	-	3.9	7.7	23.2	1.5	9.1	6.7	3.5	1	1	3	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
CorA	PF01544.18	gi|384434923|ref|YP_005644281.1|	-	4	6.7	11.7	1.1	8.4	1.4	2.6	2	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
BLOC1_2	PF10046.9	gi|384434923|ref|YP_005644281.1|	-	4.2	7.7	17.1	4.6	7.6	3.3	3.1	1	1	2	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
LPP	PF04728.13	gi|384434923|ref|YP_005644281.1|	-	4.2	7.8	14.8	18	5.8	1.1	4.1	1	1	4	5	5	5	0	Lipoprotein	leucine-zipper
Golgin_A5	PF09787.9	gi|384434923|ref|YP_005644281.1|	-	4.6	6.6	22.8	5.4	6.4	14.2	2.1	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
HrpB7	PF09486.10	gi|384434923|ref|YP_005644281.1|	-	4.9	7.5	18.0	8.4	6.8	4.6	2.9	1	1	2	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB7)
COMP	PF11598.8	gi|384434923|ref|YP_005644281.1|	-	4.9	7.7	11.4	14	6.3	0.2	4.5	4	0	0	4	4	3	0	Cartilage	oligomeric	matrix	protein
Prefoldin	PF02996.17	gi|384434923|ref|YP_005644281.1|	-	5.2	7.0	19.7	3.1	7.7	1.6	3.7	1	1	1	2	2	2	0	Prefoldin	subunit
Tho2	PF11262.8	gi|384434923|ref|YP_005644281.1|	-	5.8	6.0	14.0	9	5.4	3.9	2.4	1	1	1	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
ZnuA	PF01297.17	gi|384434923|ref|YP_005644281.1|	-	5.8	6.2	7.0	7.1	5.9	5.0	2.0	1	1	1	2	2	2	0	Zinc-uptake	complex	component	A	periplasmic
HIP1_clath_bdg	PF16515.5	gi|384434923|ref|YP_005644281.1|	-	6.1	7.5	20.2	16	6.2	3.8	2.7	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
SYCE1	PF15233.6	gi|384434923|ref|YP_005644281.1|	-	6.2	6.9	22.7	1.7e+02	2.2	22.9	2.3	1	1	0	1	1	1	0	Synaptonemal	complex	central	element	protein	1
COG5	PF10392.9	gi|384434923|ref|YP_005644281.1|	-	6.6	6.9	14.7	11	6.2	5.9	2.6	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
CREPT	PF16566.5	gi|384434923|ref|YP_005644281.1|	-	6.8	6.9	15.5	3.4	7.8	6.4	2.4	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
DivIC	PF04977.15	gi|384434923|ref|YP_005644281.1|	-	8	6.3	29.8	2.6	7.9	2.8	4.9	2	1	4	6	6	5	0	Septum	formation	initiator
DUF2570	PF10828.8	gi|384434923|ref|YP_005644281.1|	-	9.2	6.1	18.0	5.7	6.8	5.1	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2570)
TolA_bind_tri	PF16331.5	gi|384434923|ref|YP_005644281.1|	-	9.3	6.4	15.2	3.3	7.9	0.5	3.6	1	1	2	3	3	3	0	TolA	binding	protein	trimerisation
RHH_1	PF01402.21	gi|384434924|ref|YP_005644282.1|	-	0.00015	21.6	0.1	0.00019	21.2	0.1	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
AIM24	PF01987.17	gi|384434925|ref|YP_005644283.1|	-	1.8e-54	184.6	0.3	2e-54	184.4	0.3	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
TrkA_N	PF02254.18	gi|384434926|ref|YP_005644284.1|	-	2.3e-17	63.3	0.5	3.9e-17	62.6	0.5	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|384434926|ref|YP_005644284.1|	-	1.1e-06	28.3	2.5	2.2e-05	24.2	0.1	3.1	1	1	2	3	3	3	1	TrkA-C	domain
DUF1622	PF07784.11	gi|384434926|ref|YP_005644284.1|	-	2	8.4	6.9	0.53	10.2	0.3	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1622)
Ion_trans_2	PF07885.16	gi|384434926|ref|YP_005644284.1|	-	2.3	8.3	7.2	4.2	7.4	7.2	1.5	1	0	0	1	1	1	0	Ion	channel
Peptidase_U32	PF01136.19	gi|384434927|ref|YP_005644285.1|	-	3.4e-15	55.8	0.4	7.3e-10	38.4	0.0	2.2	2	0	0	2	2	2	2	Peptidase	family	U32
Tn916-Xis	PF09035.10	gi|384434927|ref|YP_005644285.1|	-	0.00018	21.6	0.4	0.19	12.0	0.0	2.7	2	0	0	2	2	2	2	Excisionase	from	transposon	Tn916
TusA	PF01206.17	gi|384434928|ref|YP_005644286.1|	-	5.4e-25	87.0	0.0	6.1e-25	86.8	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|384434928|ref|YP_005644286.1|	-	0.031	14.1	0.0	0.052	13.4	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
DUF1233	PF06806.12	gi|384434929|ref|YP_005644287.1|	-	0.071	12.7	0.0	0.083	12.5	0.0	1.2	1	0	0	1	1	1	0	Putative	excisionase	(DUF1233)
Resolvase	PF00239.21	gi|384434930|ref|YP_005644288.1|	-	4.5e-19	69.0	0.0	6.8e-19	68.4	0.0	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384434930|ref|YP_005644288.1|	-	1.1e-11	44.8	0.1	2.2e-11	43.8	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384434930|ref|YP_005644288.1|	-	2.4e-08	34.0	0.1	4.7e-08	33.0	0.1	1.5	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384434930|ref|YP_005644288.1|	-	1.8e-06	27.6	0.0	3.3e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384434930|ref|YP_005644288.1|	-	0.00024	20.9	1.4	0.001	18.9	0.0	2.4	3	0	0	3	3	3	1	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.6	gi|384434930|ref|YP_005644288.1|	-	0.035	13.9	0.0	0.087	12.7	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
AbiEi_4	PF13338.6	gi|384434930|ref|YP_005644288.1|	-	0.037	14.2	0.0	0.089	13.0	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
CLP1_P	PF16575.5	gi|384434930|ref|YP_005644288.1|	-	0.038	13.8	0.1	0.06	13.1	0.1	1.5	1	1	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HTH_29	PF13551.6	gi|384434930|ref|YP_005644288.1|	-	0.066	13.2	0.0	0.24	11.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
Hemerythrin	PF01814.23	gi|384434933|ref|YP_005644291.1|	-	0.0041	17.7	1.3	0.0047	17.6	1.3	1.2	1	0	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
DDE_Tnp_1	PF01609.21	gi|384434934|ref|YP_005644292.1|	-	2.2e-15	56.9	0.4	2.9e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|384434934|ref|YP_005644292.1|	-	2.9e-08	34.0	0.0	9.8e-08	32.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF4298	PF14131.6	gi|384434934|ref|YP_005644292.1|	-	0.046	13.7	0.7	0.24	11.4	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Rnk_N	PF14760.6	gi|384434935|ref|YP_005644293.1|	-	0.1	13.1	0.2	0.12	12.9	0.2	1.1	1	0	0	1	1	1	0	Rnk	N-terminus
DDE_Tnp_1	PF01609.21	gi|384434937|ref|YP_005644295.1|	-	0.0023	17.6	0.0	0.0031	17.2	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
MFS_1	PF07690.16	gi|384434940|ref|YP_005644298.1|	-	1.4e-25	90.0	73.1	3.2e-20	72.4	43.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|384434940|ref|YP_005644298.1|	-	0.032	12.7	3.7	0.057	11.8	3.7	1.5	1	0	0	1	1	1	0	Transmembrane	secretion	effector
DUF5359	PF17313.2	gi|384434940|ref|YP_005644298.1|	-	0.88	9.6	4.9	0.36	10.9	0.9	2.5	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5359)
DDE_Tnp_1	PF01609.21	gi|384434943|ref|YP_005644301.1|	-	1.3e-16	60.9	0.0	2.7e-16	59.9	0.0	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|384434944|ref|YP_005644302.1|	-	0.012	15.3	0.0	0.017	14.7	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
Interferon	PF00143.19	gi|384434945|ref|YP_005644303.1|	-	0.0021	18.3	0.1	0.0024	18.1	0.1	1.0	1	0	0	1	1	1	1	Interferon	alpha/beta	domain
DNA_repr_REX1B	PF14966.6	gi|384434945|ref|YP_005644303.1|	-	0.0032	18.1	0.3	0.0036	17.9	0.3	1.1	1	0	0	1	1	1	1	DNA	repair	REX1-B
Phage_GP20	PF06810.11	gi|384434945|ref|YP_005644303.1|	-	0.0068	16.2	5.8	0.0077	16.0	5.8	1.0	1	0	0	1	1	1	1	Phage	minor	structural	protein	GP20
DUF677	PF05055.12	gi|384434945|ref|YP_005644303.1|	-	0.007	15.3	2.9	0.0077	15.2	2.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF677)
FlaC_arch	PF05377.11	gi|384434945|ref|YP_005644303.1|	-	0.018	15.4	3.3	0.018	15.4	3.3	1.9	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
SpoU_sub_bind	PF08032.12	gi|384434945|ref|YP_005644303.1|	-	0.036	14.3	3.7	0.64	10.3	0.1	2.0	1	1	1	2	2	2	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
CREPT	PF16566.5	gi|384434945|ref|YP_005644303.1|	-	0.083	13.1	3.6	0.095	12.9	3.6	1.0	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Pox_A_type_inc	PF04508.12	gi|384434945|ref|YP_005644303.1|	-	0.5	10.3	5.2	0.52	10.2	2.6	2.3	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
DUF772	PF05598.11	gi|384434946|ref|YP_005644304.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.7	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434946|ref|YP_005644304.1|	-	0.07	12.8	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
Sulfolobus_pRN	PF05584.11	gi|384434947|ref|YP_005644305.1|	-	1e-45	153.6	4.5	1.1e-45	153.5	4.5	1.0	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
TFIIE_alpha	PF02002.17	gi|384434947|ref|YP_005644305.1|	-	0.00011	22.0	0.2	0.00013	21.8	0.2	1.0	1	0	0	1	1	1	1	TFIIE	alpha	subunit
TrmB	PF01978.19	gi|384434947|ref|YP_005644305.1|	-	0.00029	20.6	0.0	0.00035	20.4	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rio2_N	PF09202.11	gi|384434947|ref|YP_005644305.1|	-	0.035	14.3	0.0	0.044	14.0	0.0	1.1	1	0	0	1	1	1	0	Rio2,	N-terminal
ArsR	PF09824.9	gi|384434947|ref|YP_005644305.1|	-	0.16	11.5	0.1	0.17	11.5	0.1	1.0	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
ERGIC_N	PF13850.6	gi|384434948|ref|YP_005644306.1|	-	0.21	12.0	0.2	0.21	12.0	0.2	2.4	2	1	1	3	3	3	0	Endoplasmic	Reticulum-Golgi	Intermediate	Compartment	(ERGIC)
DUF3087	PF11286.8	gi|384434948|ref|YP_005644306.1|	-	0.88	9.0	4.6	0.41	10.1	1.2	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3087)
DUF202	PF02656.15	gi|384434948|ref|YP_005644306.1|	-	1.2	9.6	6.9	37	4.9	6.9	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DDE_Tnp_1	PF01609.21	gi|384434949|ref|YP_005644307.1|	-	0.014	15.1	0.0	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
ATP-grasp_5	PF13549.6	gi|384434951|ref|YP_005644309.1|	-	1.7e-48	165.0	0.4	3.3e-48	164.0	0.4	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|384434951|ref|YP_005644309.1|	-	2.3e-46	157.0	0.0	5.7e-46	155.7	0.0	1.7	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|384434951|ref|YP_005644309.1|	-	2.1e-23	83.0	0.8	2.2e-22	79.7	0.1	2.8	2	1	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|384434951|ref|YP_005644309.1|	-	3.1e-14	53.4	0.5	9.8e-14	51.8	0.5	2.0	1	0	0	1	1	1	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|384434951|ref|YP_005644309.1|	-	0.0018	17.9	0.1	0.07	12.7	0.1	2.8	2	1	0	2	2	2	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|384434951|ref|YP_005644309.1|	-	0.0034	17.2	0.0	0.009	15.8	0.0	1.7	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp	PF02222.22	gi|384434951|ref|YP_005644309.1|	-	0.0085	15.7	0.5	0.047	13.3	0.0	2.4	3	0	0	3	3	3	1	ATP-grasp	domain
RimK	PF08443.11	gi|384434951|ref|YP_005644309.1|	-	0.053	13.1	0.3	0.14	11.7	0.1	1.8	2	0	0	2	2	2	0	RimK-like	ATP-grasp	domain
Vps8	PF12816.7	gi|384434951|ref|YP_005644309.1|	-	0.2	11.1	0.4	21	4.6	0.0	3.1	4	0	0	4	4	4	0	Golgi	CORVET	complex	core	vacuolar	protein	8
DUF981	PF06168.11	gi|384434952|ref|YP_005644310.1|	-	7.3e-56	189.1	19.5	8.2e-56	188.9	19.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF981)
FixH	PF05751.11	gi|384434952|ref|YP_005644310.1|	-	4.2	7.4	10.5	0.066	13.2	2.7	2.0	2	0	0	2	2	2	0	FixH
DDE_Tnp_2	PF04693.12	gi|384434953|ref|YP_005644311.1|	-	4.5e-179	594.7	1.9	5.2e-179	594.5	1.9	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434953|ref|YP_005644311.1|	-	9.7e-06	25.1	0.0	1.8e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434953|ref|YP_005644311.1|	-	0.0012	18.5	0.0	0.0022	17.7	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
Ubie_methyltran	PF01209.18	gi|384434954|ref|YP_005644312.1|	-	9.6e-22	77.4	0.9	1.7e-21	76.6	0.9	1.3	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.12	gi|384434954|ref|YP_005644312.1|	-	1.2e-11	45.0	0.0	2.3e-11	44.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384434954|ref|YP_005644312.1|	-	1.5e-10	41.6	0.0	3.7e-10	40.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384434954|ref|YP_005644312.1|	-	1e-07	31.9	0.1	2.1e-07	30.8	0.1	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|384434954|ref|YP_005644312.1|	-	8.1e-06	25.6	0.0	1.2e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_23	PF13489.6	gi|384434954|ref|YP_005644312.1|	-	2.9e-05	24.0	0.0	3.5e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384434954|ref|YP_005644312.1|	-	3.5e-05	24.5	0.0	8.5e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|384434954|ref|YP_005644312.1|	-	0.00099	19.0	0.5	0.0019	18.1	0.5	1.5	1	1	0	1	1	1	1	Hypothetical	methyltransferase
PPTA	PF01239.22	gi|384434954|ref|YP_005644312.1|	-	0.12	12.1	1.4	0.25	11.1	0.4	2.1	2	0	0	2	2	2	0	Protein	prenyltransferase	alpha	subunit	repeat
DUF3347	PF11827.8	gi|384434954|ref|YP_005644312.1|	-	0.19	11.9	0.4	0.91	9.7	0.0	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3347)
SprT-like	PF10263.9	gi|384434955|ref|YP_005644313.1|	-	0.046	13.6	0.0	0.074	12.9	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
DUF4157	PF13699.6	gi|384434955|ref|YP_005644313.1|	-	0.1	12.8	0.0	0.24	11.7	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4157)
FtsX	PF02687.21	gi|384434956|ref|YP_005644314.1|	-	2.1e-12	47.3	8.8	2.1e-12	47.3	8.8	3.4	3	0	0	3	3	3	1	FtsX-like	permease	family
MacB_PCD	PF12704.7	gi|384434956|ref|YP_005644314.1|	-	5.1e-12	46.5	8.3	5.1e-12	46.5	8.3	1.8	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
Amidohydro_1	PF01979.20	gi|384434957|ref|YP_005644315.1|	-	9.8e-46	156.6	0.0	1.1e-45	156.4	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|384434957|ref|YP_005644315.1|	-	1.9e-16	60.6	0.0	3.6e-12	46.5	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
DUF2249	PF10006.9	gi|384434958|ref|YP_005644316.1|	-	3.1e-14	52.6	0.0	1.4e-13	50.5	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2249)
Cupin_2	PF07883.11	gi|384434958|ref|YP_005644316.1|	-	4e-11	42.5	0.3	8.8e-11	41.4	0.1	1.7	2	0	0	2	2	2	1	Cupin	domain
AraC_binding	PF02311.19	gi|384434958|ref|YP_005644316.1|	-	4.1e-07	30.0	0.0	7.5e-07	29.1	0.0	1.4	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.8	gi|384434958|ref|YP_005644316.1|	-	3.7e-05	23.8	0.0	7.2e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_1	PF00190.22	gi|384434958|ref|YP_005644316.1|	-	0.00031	20.4	0.0	0.00048	19.8	0.0	1.2	1	0	0	1	1	1	1	Cupin
SAS-6_N	PF16531.5	gi|384434958|ref|YP_005644316.1|	-	0.00071	20.1	0.0	0.0013	19.3	0.0	1.3	1	0	0	1	1	1	1	Centriolar	protein	SAS	N-terminal
Cupin_3	PF05899.12	gi|384434958|ref|YP_005644316.1|	-	0.0018	17.9	0.0	0.0041	16.8	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Auxin_BP	PF02041.16	gi|384434958|ref|YP_005644316.1|	-	0.022	14.4	0.0	0.035	13.8	0.0	1.3	1	0	0	1	1	1	0	Auxin	binding	protein
Ribosomal_S8	PF00410.19	gi|384434958|ref|YP_005644316.1|	-	0.038	13.9	0.1	0.059	13.3	0.1	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S8
Peptidase_S48	PF03574.15	gi|384434958|ref|YP_005644316.1|	-	0.061	13.5	0.0	0.086	13.1	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	S48
EutQ	PF06249.12	gi|384434958|ref|YP_005644316.1|	-	0.098	12.4	0.1	0.2	11.4	0.1	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
Cupin_6	PF12852.7	gi|384434958|ref|YP_005644316.1|	-	0.21	11.3	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	Cupin
AraC_binding_2	PF14525.6	gi|384434958|ref|YP_005644316.1|	-	0.22	11.2	0.0	0.3	10.7	0.0	1.2	1	0	0	1	1	1	0	AraC-binding-like	domain
DNA_ligase_A_N	PF04675.14	gi|384434959|ref|YP_005644317.1|	-	0.06	13.7	0.2	0.061	13.6	0.2	1.2	1	0	0	1	1	1	0	DNA	ligase	N	terminus
Ca_hom_mod	PF14798.6	gi|384434960|ref|YP_005644318.1|	-	0.33	10.0	0.5	0.46	9.5	0.3	1.3	1	1	0	1	1	1	0	Calcium	homeostasis	modulator
DUF4064	PF13273.6	gi|384434960|ref|YP_005644318.1|	-	1.1	9.6	31.6	0.12	12.7	18.0	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
Copper-bind	PF00127.20	gi|384434961|ref|YP_005644319.1|	-	1e-07	32.3	0.0	2.8e-07	30.9	0.0	1.8	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
GRP	PF07172.11	gi|384434961|ref|YP_005644319.1|	-	2.4e-06	28.2	2.4	3.9e-06	27.4	2.4	1.5	1	0	0	1	1	1	1	Glycine	rich	protein	family
SoxE	PF06525.11	gi|384434961|ref|YP_005644319.1|	-	0.00066	19.2	0.6	0.0028	17.1	0.6	2.0	1	1	0	1	1	1	1	Sulfocyanin	(SoxE)	domain
Hemerythrin	PF01814.23	gi|384434962|ref|YP_005644320.1|	-	5.9e-20	72.2	1.2	7.7e-20	71.9	0.3	1.6	2	0	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
PqqD	PF05402.12	gi|384434962|ref|YP_005644320.1|	-	0.052	13.9	0.2	0.24	11.8	0.0	2.1	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
SANT_DAMP1_like	PF16282.5	gi|384434963|ref|YP_005644321.1|	-	0.11	12.8	0.2	0.18	12.0	0.1	1.4	1	1	0	1	1	1	0	SANT/Myb-like	domain	of	DAMP1
HicB_lk_antitox	PF15919.5	gi|384434963|ref|YP_005644321.1|	-	0.15	12.2	0.1	0.18	12.0	0.1	1.1	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
HTH_10	PF04967.12	gi|384434964|ref|YP_005644322.1|	-	1e-24	86.1	0.1	1.6e-24	85.4	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|384434964|ref|YP_005644322.1|	-	2.8e-08	33.2	0.3	4.7e-08	32.4	0.3	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|384434964|ref|YP_005644322.1|	-	0.00011	21.7	0.1	0.00022	20.7	0.1	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_ISL3	PF13542.6	gi|384434964|ref|YP_005644322.1|	-	0.0071	15.7	0.0	0.012	15.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_26	PF13443.6	gi|384434964|ref|YP_005644322.1|	-	0.015	15.8	0.0	0.054	13.9	0.0	1.9	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_23	PF13384.6	gi|384434964|ref|YP_005644322.1|	-	0.017	14.9	0.0	0.036	13.9	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
ENT	PF03735.14	gi|384434964|ref|YP_005644322.1|	-	0.024	14.7	0.0	0.072	13.2	0.0	1.9	1	1	0	1	1	1	0	ENT	domain
HTH_37	PF13744.6	gi|384434964|ref|YP_005644322.1|	-	0.027	14.4	0.0	0.13	12.2	0.0	2.0	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|384434964|ref|YP_005644322.1|	-	0.04	13.7	0.0	0.075	12.8	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_35	PF13693.6	gi|384434964|ref|YP_005644322.1|	-	0.045	13.8	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r3	PF04539.16	gi|384434964|ref|YP_005644322.1|	-	0.045	13.8	0.0	0.093	12.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-70	region	3
TIP49	PF06068.13	gi|384434964|ref|YP_005644322.1|	-	0.047	12.9	2.3	1.8	7.7	0.6	2.1	1	1	1	2	2	2	0	TIP49	P-loop	domain
MarR_2	PF12802.7	gi|384434964|ref|YP_005644322.1|	-	0.055	13.4	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|384434964|ref|YP_005644322.1|	-	0.062	13.3	0.2	0.29	11.1	0.1	2.3	1	1	1	2	2	2	0	HTH	domain
MarR	PF01047.22	gi|384434964|ref|YP_005644322.1|	-	0.064	13.2	0.1	0.19	11.7	0.1	1.8	1	1	0	1	1	1	0	MarR	family
GerE	PF00196.19	gi|384434964|ref|YP_005644322.1|	-	0.08	12.5	0.1	11	5.7	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Mga	PF08280.11	gi|384434964|ref|YP_005644322.1|	-	0.082	12.9	1.3	0.18	11.9	0.0	2.3	3	1	0	3	3	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_AsnC-type	PF13404.6	gi|384434964|ref|YP_005644322.1|	-	0.087	12.7	0.1	0.18	11.7	0.1	1.5	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|384434964|ref|YP_005644322.1|	-	0.098	12.4	0.0	2.9	7.7	0.0	2.5	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|384434964|ref|YP_005644322.1|	-	0.1	12.3	0.1	0.84	9.4	0.1	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF488	PF04343.13	gi|384434965|ref|YP_005644323.1|	-	2.2e-27	96.1	0.0	2.5e-27	95.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
DUF3884	PF13024.6	gi|384434965|ref|YP_005644323.1|	-	0.035	13.7	0.1	0.052	13.1	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3884)
zf-Di19	PF05605.12	gi|384434966|ref|YP_005644324.1|	-	0.0079	16.5	0.2	0.0088	16.3	0.2	1.1	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.6	gi|384434966|ref|YP_005644324.1|	-	0.044	14.6	0.7	0.064	14.1	0.7	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
zf-H2C2_2	PF13465.6	gi|384434966|ref|YP_005644324.1|	-	0.47	11.0	3.8	1.2	9.6	0.4	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
FeS_assembly_P	PF01883.19	gi|384434967|ref|YP_005644325.1|	-	5e-17	61.9	0.2	6.6e-17	61.5	0.2	1.2	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
Antimicrobial19	PF08225.11	gi|384434967|ref|YP_005644325.1|	-	0.0026	17.3	0.6	0.0051	16.4	0.6	1.4	1	0	0	1	1	1	1	Pseudin	antimicrobial	peptide
NifU	PF01106.17	gi|384434967|ref|YP_005644325.1|	-	0.05	13.7	0.1	0.15	12.2	0.1	1.7	1	1	1	2	2	2	0	NifU-like	domain
Usp	PF00582.26	gi|384434968|ref|YP_005644326.1|	-	1.7e-37	129.1	0.6	2.1e-37	128.8	0.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
PIN_9	PF18477.1	gi|384434968|ref|YP_005644326.1|	-	0.0049	17.2	0.7	0.58	10.5	0.1	2.2	1	1	1	2	2	2	2	PIN	like	domain
DUF772	PF05598.11	gi|384434969|ref|YP_005644327.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434969|ref|YP_005644327.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
Peptidase_M19	PF01244.21	gi|384434970|ref|YP_005644328.1|	-	5.5e-76	255.8	0.0	6.1e-76	255.6	0.0	1.0	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
MFS_1	PF07690.16	gi|384434971|ref|YP_005644329.1|	-	2.2e-30	105.8	58.9	8.9e-25	87.3	40.8	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|384434971|ref|YP_005644329.1|	-	0.047	12.1	14.1	0.004	15.6	6.9	2.0	2	0	0	2	2	2	0	Transmembrane	secretion	effector
ATPase	PF06745.13	gi|384434972|ref|YP_005644330.1|	-	6.6e-88	293.9	0.4	8.5e-88	293.6	0.4	1.1	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|384434972|ref|YP_005644330.1|	-	5e-05	23.0	0.0	0.00012	21.8	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|384434972|ref|YP_005644330.1|	-	0.00012	21.5	1.7	0.0029	16.9	0.5	2.3	1	1	1	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
Rad51	PF08423.11	gi|384434972|ref|YP_005644330.1|	-	0.002	17.5	0.3	0.15	11.3	0.1	2.3	2	0	0	2	2	2	1	Rad51
DnaB_C	PF03796.15	gi|384434972|ref|YP_005644330.1|	-	0.0044	16.4	0.0	0.029	13.7	0.0	2.0	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_14	PF13173.6	gi|384434972|ref|YP_005644330.1|	-	0.013	15.5	0.0	0.028	14.5	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|384434972|ref|YP_005644330.1|	-	0.015	15.1	2.0	0.36	10.5	1.5	2.6	2	1	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|384434972|ref|YP_005644330.1|	-	0.022	13.8	0.0	0.044	12.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|384434972|ref|YP_005644330.1|	-	0.024	15.0	0.1	0.042	14.2	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
GvpD	PF07088.11	gi|384434972|ref|YP_005644330.1|	-	0.035	12.7	0.1	0.078	11.6	0.1	1.4	1	1	0	1	1	1	0	GvpD	gas	vesicle	protein
AAA_19	PF13245.6	gi|384434972|ref|YP_005644330.1|	-	0.31	11.4	1.0	1.1	9.6	0.4	1.9	2	0	0	2	2	2	0	AAA	domain
BacA	PF02673.18	gi|384434973|ref|YP_005644331.1|	-	1.3e-47	162.7	23.9	1.6e-47	162.4	23.9	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
Romo1	PF10247.9	gi|384434973|ref|YP_005644331.1|	-	0.019	15.4	0.8	0.063	13.6	0.8	1.9	1	0	0	1	1	1	0	Reactive	mitochondrial	oxygen	species	modulator	1
YwiC	PF14256.6	gi|384434973|ref|YP_005644331.1|	-	0.17	12.2	10.4	1.6	9.0	1.0	2.4	2	0	0	2	2	2	0	YwiC-like	protein
ATP1G1_PLM_MAT8	PF02038.16	gi|384434973|ref|YP_005644331.1|	-	4.1	6.9	5.8	5.3	6.6	0.0	3.1	2	0	0	2	2	2	0	ATP1G1/PLM/MAT8	family
Peptidase_M48	PF01435.18	gi|384434974|ref|YP_005644332.1|	-	2.6e-30	105.7	0.0	4.9e-30	104.8	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|384434974|ref|YP_005644332.1|	-	0.011	15.0	0.7	0.22	10.7	0.0	2.2	2	0	0	2	2	2	0	BlaR1	peptidase	M56
CCSMST1	PF15013.6	gi|384434974|ref|YP_005644332.1|	-	0.06	13.5	0.2	0.11	12.6	0.2	1.5	1	0	0	1	1	1	0	CCSMST1	family
Jagunal	PF07086.12	gi|384434974|ref|YP_005644332.1|	-	1.7	8.7	5.2	0.48	10.5	1.2	1.9	2	0	0	2	2	2	0	Jagunal,	ER	re-organisation	during	oogenesis
GATase	PF00117.28	gi|384434976|ref|YP_005644334.1|	-	7.6e-18	65.0	0.0	9.8e-18	64.6	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|384434976|ref|YP_005644334.1|	-	8.6e-06	25.6	0.3	7.1e-05	22.7	0.3	2.2	1	1	0	1	1	1	1	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|384434976|ref|YP_005644334.1|	-	0.013	15.3	0.0	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	DJ-1/PfpI	family
DDE_Tnp_2	PF04693.12	gi|384434978|ref|YP_005644336.1|	-	3.2e-177	588.6	1.7	3.6e-177	588.4	1.7	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434978|ref|YP_005644336.1|	-	2.1e-05	24.0	0.0	4e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434978|ref|YP_005644336.1|	-	0.0041	16.8	0.0	0.0057	16.3	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384434978|ref|YP_005644336.1|	-	0.11	12.2	0.1	0.21	11.3	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
DUF4322	PF14210.6	gi|384434979|ref|YP_005644337.1|	-	1.6e-42	143.2	0.1	4e-42	141.9	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4322)
DDE_Tnp_1	PF01609.21	gi|384434979|ref|YP_005644337.1|	-	5.6e-08	32.7	0.0	9.4e-08	32.0	0.0	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
OrfB_Zn_ribbon	PF07282.11	gi|384434980|ref|YP_005644338.1|	-	3e-26	91.1	0.1	5.4e-26	90.3	0.1	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434980|ref|YP_005644338.1|	-	1.2e-18	67.5	0.5	7.2e-18	65.0	0.0	2.4	2	1	1	3	3	3	1	Probable	transposase
TF_Zn_Ribbon	PF08271.12	gi|384434980|ref|YP_005644338.1|	-	0.01	15.3	1.6	0.46	10.0	0.0	2.5	1	1	1	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.6	gi|384434980|ref|YP_005644338.1|	-	0.011	15.2	1.5	0.85	9.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|384434980|ref|YP_005644338.1|	-	0.077	12.7	0.9	2.1	8.1	0.1	2.6	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
zinc_ribbon_2	PF13240.6	gi|384434980|ref|YP_005644338.1|	-	1.1	9.1	2.9	20	5.1	0.4	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DDE_Tnp_1	PF01609.21	gi|384434981|ref|YP_005644339.1|	-	8e-17	61.6	0.0	1e-16	61.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
Radical_SAM	PF04055.21	gi|384434982|ref|YP_005644340.1|	-	3.2e-16	60.2	0.0	3.3e-15	56.9	0.0	2.2	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434982|ref|YP_005644340.1|	-	6.2e-08	33.0	0.0	1.2e-07	32.1	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|384434982|ref|YP_005644340.1|	-	3.1e-06	27.6	0.0	1.4e-05	25.5	0.0	2.2	1	1	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|384434982|ref|YP_005644340.1|	-	0.00015	21.9	0.0	0.00033	20.8	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.21	gi|384434983|ref|YP_005644341.1|	-	1.2e-26	94.1	0.0	1e-23	84.6	0.0	2.4	1	1	1	2	2	2	2	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|384434983|ref|YP_005644341.1|	-	2.2e-09	37.7	0.0	6.7e-09	36.1	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|384434983|ref|YP_005644341.1|	-	7.2e-09	36.0	0.7	1.8e-08	34.8	0.7	1.7	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.6	gi|384434983|ref|YP_005644341.1|	-	6.7e-07	29.5	0.0	1.5e-06	28.4	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AP_endonuc_2	PF01261.24	gi|384434983|ref|YP_005644341.1|	-	5e-06	26.1	0.0	0.0017	17.8	0.0	2.4	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
Cas_Cas4	PF01930.17	gi|384434983|ref|YP_005644341.1|	-	0.1	12.7	0.3	0.23	11.5	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF83
Prenyltransf	PF01255.19	gi|384434983|ref|YP_005644341.1|	-	0.19	11.2	0.1	0.36	10.3	0.1	1.4	1	0	0	1	1	1	0	Putative	undecaprenyl	diphosphate	synthase
REF	PF05755.12	gi|384434984|ref|YP_005644342.1|	-	0.092	12.6	0.0	0.11	12.3	0.0	1.4	1	1	0	1	1	1	0	Rubber	elongation	factor	protein	(REF)
NTP_transf_2	PF01909.23	gi|384434985|ref|YP_005644343.1|	-	1.8e-12	47.3	0.0	2.7e-12	46.8	0.0	1.4	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384434985|ref|YP_005644343.1|	-	2.4e-10	40.3	0.1	4.4e-10	39.5	0.0	1.5	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
DNA_pol_B_palm	PF14792.6	gi|384434985|ref|YP_005644343.1|	-	0.063	13.5	0.0	0.091	13.0	0.0	1.4	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
HEPN	PF05168.14	gi|384434986|ref|YP_005644344.1|	-	1.6e-33	115.3	0.4	1.9e-33	115.1	0.4	1.0	1	0	0	1	1	1	1	HEPN	domain
DUF3826	PF12875.7	gi|384434987|ref|YP_005644345.1|	-	0.0083	16.3	1.8	0.011	15.9	1.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3826)
Resolvase	PF00239.21	gi|384434988|ref|YP_005644346.1|	-	4e-19	69.2	0.1	6.1e-19	68.6	0.1	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384434988|ref|YP_005644346.1|	-	4.6e-12	45.9	0.1	9.8e-12	44.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR_1	PF13411.6	gi|384434988|ref|YP_005644346.1|	-	3.6e-09	36.6	0.2	8.3e-09	35.4	0.2	1.6	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.23	gi|384434988|ref|YP_005644346.1|	-	1.5e-06	27.8	0.0	3.3e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_2	PF13591.6	gi|384434988|ref|YP_005644346.1|	-	3.9e-05	23.4	2.1	0.00016	21.5	0.0	2.5	3	0	0	3	3	3	1	MerR	HTH	family	regulatory	protein
AbiEi_4	PF13338.6	gi|384434988|ref|YP_005644346.1|	-	0.021	14.9	0.0	0.088	13.0	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_23	PF13384.6	gi|384434988|ref|YP_005644346.1|	-	0.025	14.4	0.1	0.086	12.7	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
CLP1_P	PF16575.5	gi|384434988|ref|YP_005644346.1|	-	0.045	13.5	0.1	0.069	12.9	0.1	1.5	1	1	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HTH_29	PF13551.6	gi|384434988|ref|YP_005644346.1|	-	0.079	13.0	0.0	0.23	11.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
FtsH_ext	PF06480.15	gi|384434988|ref|YP_005644346.1|	-	0.21	11.9	0.8	2.1	8.7	0.7	2.4	1	1	0	1	1	1	0	FtsH	Extracellular
OrfB_Zn_ribbon	PF07282.11	gi|384434989|ref|YP_005644347.1|	-	2.8e-21	75.2	0.1	5.1e-21	74.4	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384434989|ref|YP_005644347.1|	-	3.9e-18	65.8	2.4	7.3e-18	64.9	0.0	2.5	2	1	0	2	2	2	1	Probable	transposase
FAM76	PF16046.5	gi|384434989|ref|YP_005644347.1|	-	0.046	13.1	0.2	0.046	13.1	0.2	2.0	3	0	0	3	3	3	0	FAM76	protein
DUF2833	PF11090.8	gi|384434989|ref|YP_005644347.1|	-	0.36	11.2	4.7	0.73	10.3	0.3	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2833)
DUF4816	PF16086.5	gi|384434989|ref|YP_005644347.1|	-	3.8	7.5	5.5	0.85	9.6	0.3	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4816)
DUF772	PF05598.11	gi|384434992|ref|YP_005644350.1|	-	4.4e-08	33.0	0.0	6.8e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434993|ref|YP_005644351.1|	-	0.013	15.1	0.0	0.019	14.6	0.0	1.2	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_2	PF04693.12	gi|384434994|ref|YP_005644352.1|	-	6.1e-180	597.6	1.5	7e-180	597.4	1.5	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384434994|ref|YP_005644352.1|	-	8.5e-06	25.3	0.0	1.6e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384434994|ref|YP_005644352.1|	-	0.0015	18.2	0.0	0.0024	17.6	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384434994|ref|YP_005644352.1|	-	0.13	12.0	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
DUF772	PF05598.11	gi|384434996|ref|YP_005644354.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384434996|ref|YP_005644354.1|	-	0.031	13.9	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
SlyX	PF04102.12	gi|384434998|ref|YP_005644356.1|	-	8.3e-08	32.7	21.2	0.00044	20.8	3.8	4.4	1	1	3	4	4	4	2	SlyX
DUF3782	PF12644.7	gi|384434998|ref|YP_005644356.1|	-	2e-06	27.8	23.4	0.0002	21.4	0.1	5.0	1	1	3	4	4	4	1	Protein	of	unknown	function	(DUF3782)
DUF948	PF06103.11	gi|384434998|ref|YP_005644356.1|	-	2.3e-06	27.7	9.6	0.011	15.9	2.8	2.8	1	1	1	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF948)
ATG16	PF08614.11	gi|384434998|ref|YP_005644356.1|	-	3.7e-06	27.3	31.0	0.00063	20.0	12.2	2.4	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
Exonuc_VII_L	PF02601.15	gi|384434998|ref|YP_005644356.1|	-	4.7e-06	26.4	19.5	5e-06	26.3	10.6	2.1	1	1	1	2	2	2	2	Exonuclease	VII,	large	subunit
AAA_13	PF13166.6	gi|384434998|ref|YP_005644356.1|	-	6.6e-06	25.1	24.4	9.1e-06	24.6	24.4	1.1	1	0	0	1	1	1	1	AAA	domain
MCPsignal	PF00015.21	gi|384434998|ref|YP_005644356.1|	-	5.9e-05	22.9	13.5	0.00048	20.0	5.0	2.4	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF745	PF05335.13	gi|384434998|ref|YP_005644356.1|	-	0.00011	22.0	17.0	0.025	14.3	7.9	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF745)
NPV_P10	PF05531.12	gi|384434998|ref|YP_005644356.1|	-	0.00022	21.6	8.8	0.45	11.0	0.2	3.6	1	1	1	2	2	2	1	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.11	gi|384434998|ref|YP_005644356.1|	-	0.00028	19.9	34.1	0.0012	17.8	33.3	2.0	1	1	0	1	1	1	1	Spc7	kinetochore	protein
MscS_porin	PF12795.7	gi|384434998|ref|YP_005644356.1|	-	0.00039	20.0	7.6	0.00039	20.0	7.6	2.2	1	1	1	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
KxDL	PF10241.9	gi|384434998|ref|YP_005644356.1|	-	0.00056	20.1	20.8	0.15	12.3	6.0	4.0	1	1	2	3	3	3	1	Uncharacterized	conserved	protein
DUF4200	PF13863.6	gi|384434998|ref|YP_005644356.1|	-	0.00066	20.1	24.1	0.00066	20.1	24.1	2.6	1	1	2	3	3	3	3	Domain	of	unknown	function	(DUF4200)
Nup54	PF13874.6	gi|384434998|ref|YP_005644356.1|	-	0.00099	19.2	24.6	0.0034	17.5	6.4	3.3	1	1	2	3	3	3	2	Nucleoporin	complex	subunit	54
Taxilin	PF09728.9	gi|384434998|ref|YP_005644356.1|	-	0.0011	18.2	30.6	0.039	13.1	7.2	2.2	1	1	1	2	2	2	2	Myosin-like	coiled-coil	protein
TolA_bind_tri	PF16331.5	gi|384434998|ref|YP_005644356.1|	-	0.0013	18.8	18.1	0.029	14.4	5.6	2.6	1	1	1	2	2	2	2	TolA	binding	protein	trimerisation
kleA_kleC	PF17383.2	gi|384434998|ref|YP_005644356.1|	-	0.0014	18.9	13.2	0.047	14.0	2.6	3.0	1	1	2	3	3	3	2	Uncharacterized	KorC	regulated	protein	A
TMPIT	PF07851.13	gi|384434998|ref|YP_005644356.1|	-	0.0015	17.8	23.2	0.011	15.1	13.4	2.2	1	1	1	2	2	2	2	TMPIT-like	protein
FlaC_arch	PF05377.11	gi|384434998|ref|YP_005644356.1|	-	0.0018	18.6	32.6	0.026	14.9	6.3	4.5	3	1	1	4	4	4	1	Flagella	accessory	protein	C	(FlaC)
MbeD_MobD	PF04899.12	gi|384434998|ref|YP_005644356.1|	-	0.0018	18.3	8.4	2	8.6	0.1	4.4	1	1	3	4	4	4	0	MbeD/MobD	like
MAD	PF05557.13	gi|384434998|ref|YP_005644356.1|	-	0.002	16.6	26.7	0.0033	15.9	26.7	1.3	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
IFT57	PF10498.9	gi|384434998|ref|YP_005644356.1|	-	0.0021	17.1	17.1	0.0021	17.1	17.1	2.2	1	1	1	2	2	2	1	Intra-flagellar	transport	protein	57
DUF3584	PF12128.8	gi|384434998|ref|YP_005644356.1|	-	0.0022	15.6	21.7	0.0033	15.0	20.9	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3584)
APG17	PF04108.12	gi|384434998|ref|YP_005644356.1|	-	0.0031	16.7	22.7	0.013	14.7	9.6	2.2	1	1	1	2	2	2	2	Autophagy	protein	Apg17
Bacillus_HBL	PF05791.11	gi|384434998|ref|YP_005644356.1|	-	0.0031	17.4	11.6	0.15	11.9	1.0	2.8	1	1	1	2	2	2	1	Bacillus	haemolytic	enterotoxin	(HBL)
Spc29	PF17082.5	gi|384434998|ref|YP_005644356.1|	-	0.007	16.2	27.9	0.19	11.5	2.4	3.3	1	1	2	3	3	3	2	Spindle	Pole	Component	29
TMF_DNA_bd	PF12329.8	gi|384434998|ref|YP_005644356.1|	-	0.0075	16.2	41.2	0.31	11.1	16.6	3.4	1	1	2	3	3	3	1	TATA	element	modulatory	factor	1	DNA	binding
KASH_CCD	PF14662.6	gi|384434998|ref|YP_005644356.1|	-	0.0082	16.0	35.5	0.44	10.4	16.5	2.6	1	1	1	2	2	2	2	Coiled-coil	region	of	CCDC155	or	KASH
DUF1759	PF03564.15	gi|384434998|ref|YP_005644356.1|	-	0.0085	16.0	3.1	0.0085	16.0	3.1	3.5	2	1	2	4	4	3	2	Protein	of	unknown	function	(DUF1759)
YkyA	PF10368.9	gi|384434998|ref|YP_005644356.1|	-	0.0099	15.6	34.2	0.028	14.1	24.4	2.5	1	1	1	2	2	2	2	Putative	cell-wall	binding	lipoprotein
HemX	PF04375.14	gi|384434998|ref|YP_005644356.1|	-	0.013	14.8	17.7	0.36	10.1	6.5	2.8	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
BLOC1_2	PF10046.9	gi|384434998|ref|YP_005644356.1|	-	0.014	15.7	23.7	2.8	8.3	14.1	3.8	1	1	2	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4407	PF14362.6	gi|384434998|ref|YP_005644356.1|	-	0.019	14.4	6.7	0.028	13.8	6.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TMF_TATA_bd	PF12325.8	gi|384434998|ref|YP_005644356.1|	-	0.021	15.0	35.7	1.6	9.0	12.0	3.1	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DUF1664	PF07889.12	gi|384434998|ref|YP_005644356.1|	-	0.022	14.8	23.4	0.032	14.3	6.2	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
FUSC	PF04632.12	gi|384434998|ref|YP_005644356.1|	-	0.023	13.2	2.6	0.028	13.0	2.6	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Jnk-SapK_ap_N	PF09744.9	gi|384434998|ref|YP_005644356.1|	-	0.026	14.8	36.6	0.18	12.0	19.7	2.3	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
Fib_alpha	PF08702.10	gi|384434998|ref|YP_005644356.1|	-	0.028	14.6	24.3	0.35	11.1	13.7	2.5	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF16	PF01519.16	gi|384434998|ref|YP_005644356.1|	-	0.03	14.8	24.3	3.1	8.3	8.7	3.1	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
EzrA	PF06160.12	gi|384434998|ref|YP_005644356.1|	-	0.033	12.4	29.9	0.42	8.7	30.2	2.0	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Laminin_II	PF06009.12	gi|384434998|ref|YP_005644356.1|	-	0.034	14.2	20.2	0.048	13.7	12.1	2.5	1	1	1	2	2	2	0	Laminin	Domain	II
Lebercilin	PF15619.6	gi|384434998|ref|YP_005644356.1|	-	0.034	13.8	38.2	1.3	8.7	2.9	3.3	1	1	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Laminin_I	PF06008.14	gi|384434998|ref|YP_005644356.1|	-	0.034	13.8	23.4	0.097	12.4	23.4	1.6	1	1	0	1	1	1	0	Laminin	Domain	I
RmuC	PF02646.16	gi|384434998|ref|YP_005644356.1|	-	0.038	13.1	19.4	0.53	9.4	7.5	2.4	1	1	0	2	2	2	0	RmuC	family
XPG_I_2	PF12813.7	gi|384434998|ref|YP_005644356.1|	-	0.039	13.4	13.1	0.027	13.9	6.5	2.1	1	1	1	2	2	2	0	XPG	domain	containing
GAS	PF13851.6	gi|384434998|ref|YP_005644356.1|	-	0.04	13.2	34.9	0.11	11.9	16.8	3.1	1	1	2	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
GARP	PF16731.5	gi|384434998|ref|YP_005644356.1|	-	0.041	13.6	13.6	0.076	12.7	7.4	2.1	1	1	1	2	2	2	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
DUF892	PF05974.12	gi|384434998|ref|YP_005644356.1|	-	0.044	13.8	21.0	0.15	12.1	10.1	3.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF892)
Serine_rich	PF08824.10	gi|384434998|ref|YP_005644356.1|	-	0.055	13.5	14.8	0.28	11.1	9.7	2.5	1	1	1	2	2	2	0	Serine	rich	protein	interaction	domain
XhlA	PF10779.9	gi|384434998|ref|YP_005644356.1|	-	0.056	13.7	38.7	0.48	10.7	7.8	4.6	1	1	4	5	5	5	0	Haemolysin	XhlA
DUF1993	PF09351.10	gi|384434998|ref|YP_005644356.1|	-	0.065	13.4	7.7	1.2	9.2	0.4	2.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1993)
Mce4_CUP1	PF11887.8	gi|384434998|ref|YP_005644356.1|	-	0.077	12.4	0.1	0.43	10.0	0.0	1.9	1	1	1	2	2	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Snapin_Pallidin	PF14712.6	gi|384434998|ref|YP_005644356.1|	-	0.079	13.4	24.4	0.043	14.2	8.6	3.3	1	1	2	3	3	3	0	Snapin/Pallidin
TACC_C	PF05010.14	gi|384434998|ref|YP_005644356.1|	-	0.084	12.7	29.5	0.043	13.6	25.0	2.2	1	1	1	2	2	2	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
LUC7	PF03194.15	gi|384434998|ref|YP_005644356.1|	-	0.093	12.4	24.5	0.2	11.3	6.7	2.4	1	1	1	2	2	2	0	LUC7	N_terminus
MPS2	PF17060.5	gi|384434998|ref|YP_005644356.1|	-	0.095	12.0	29.4	0.3	10.3	24.1	2.4	1	1	1	2	2	2	0	Monopolar	spindle	protein	2
ARGLU	PF15346.6	gi|384434998|ref|YP_005644356.1|	-	0.11	12.4	45.9	1.4	8.8	16.6	3.1	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
Phage_GP20	PF06810.11	gi|384434998|ref|YP_005644356.1|	-	0.13	12.0	23.7	3	7.7	5.7	3.4	1	1	2	3	3	3	0	Phage	minor	structural	protein	GP20
ALMT	PF11744.8	gi|384434998|ref|YP_005644356.1|	-	0.15	10.9	16.2	0.2	10.5	16.2	1.1	1	0	0	1	1	1	0	Aluminium	activated	malate	transporter
Flagellin_C	PF00700.21	gi|384434998|ref|YP_005644356.1|	-	0.15	12.5	7.0	12	6.4	0.1	4.0	1	1	3	4	4	4	0	Bacterial	flagellin	C-terminal	helical	region
Mis14	PF08641.12	gi|384434998|ref|YP_005644356.1|	-	0.16	12.3	20.4	1.3	9.3	9.3	2.7	1	1	1	2	2	2	0	Kinetochore	protein	Mis14	like
HOOK	PF05622.12	gi|384434998|ref|YP_005644356.1|	-	0.16	10.1	32.0	0.35	9.0	16.9	2.0	1	1	1	2	2	2	0	HOOK	protein
T3SSipB	PF16535.5	gi|384434998|ref|YP_005644356.1|	-	0.16	12.4	4.3	0.94	9.9	0.5	2.2	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
DUF2333	PF10095.9	gi|384434998|ref|YP_005644356.1|	-	0.17	10.9	1.7	3.4	6.6	0.3	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2333)
ketoacyl-synt	PF00109.26	gi|384434998|ref|YP_005644356.1|	-	0.17	11.4	0.0	0.3	10.6	0.0	1.4	1	0	0	1	1	1	0	Beta-ketoacyl	synthase,	N-terminal	domain
Nsp1_C	PF05064.13	gi|384434998|ref|YP_005644356.1|	-	0.17	11.7	17.2	0.12	12.1	7.7	2.7	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
Mt_ATP-synt_D	PF05873.12	gi|384434998|ref|YP_005644356.1|	-	0.17	11.7	21.0	1.3	8.9	5.9	3.3	1	1	1	2	2	2	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
FliJ	PF02050.16	gi|384434998|ref|YP_005644356.1|	-	0.18	12.0	24.3	0.027	14.7	17.9	2.4	1	1	2	3	3	3	0	Flagellar	FliJ	protein
Dynactin_p22	PF07426.11	gi|384434998|ref|YP_005644356.1|	-	0.18	11.6	23.4	1.9	8.4	8.4	3.4	1	1	2	3	3	3	0	Dynactin	subunit	p22
Mod_r	PF07200.13	gi|384434998|ref|YP_005644356.1|	-	0.19	11.8	29.6	1.5	8.9	10.8	2.6	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF3450	PF11932.8	gi|384434998|ref|YP_005644356.1|	-	0.2	11.0	21.3	0.41	9.9	7.7	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
THEG	PF14912.6	gi|384434998|ref|YP_005644356.1|	-	0.22	12.0	7.1	1.5e+02	3.0	0.1	5.1	1	1	1	2	2	2	0	Testicular	haploid	expressed	repeat
HSBP1	PF06825.12	gi|384434998|ref|YP_005644356.1|	-	0.34	10.8	23.5	9.4	6.2	0.1	6.8	2	1	6	8	8	6	0	Heat	shock	factor	binding	protein	1
Peptidase_S46	PF10459.9	gi|384434998|ref|YP_005644356.1|	-	0.35	9.4	13.2	0.45	9.1	13.2	1.1	1	0	0	1	1	1	0	Peptidase	S46
MtrB	PF05440.12	gi|384434998|ref|YP_005644356.1|	-	0.39	11.2	5.1	7.1	7.1	0.3	3.8	1	1	3	4	4	3	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
GldM_N	PF12081.8	gi|384434998|ref|YP_005644356.1|	-	0.39	10.8	10.4	0.44	10.6	8.5	1.9	2	0	0	2	2	1	0	GldM	N-terminal	domain
DUF3080	PF11279.8	gi|384434998|ref|YP_005644356.1|	-	0.41	9.8	8.2	0.6	9.3	8.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3080)
DUF4735	PF15882.5	gi|384434998|ref|YP_005644356.1|	-	0.59	9.5	9.3	3.7	6.9	3.5	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4735)
SHE3	PF17078.5	gi|384434998|ref|YP_005644356.1|	-	0.59	9.8	25.7	0.27	10.9	2.9	2.9	1	1	2	3	3	3	0	SWI5-dependent	HO	expression	protein	3
Phage_GPO	PF05929.11	gi|384434998|ref|YP_005644356.1|	-	0.61	9.7	16.0	3.4	7.2	6.2	2.3	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
Sec8_exocyst	PF04048.14	gi|384434998|ref|YP_005644356.1|	-	0.79	9.6	22.0	4.6	7.1	4.5	3.2	1	1	2	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
Matrilin_ccoil	PF10393.9	gi|384434998|ref|YP_005644356.1|	-	0.8	9.6	22.5	28	4.7	0.5	6.1	1	1	1	2	2	1	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
Prefoldin_2	PF01920.20	gi|384434998|ref|YP_005644356.1|	-	0.82	9.7	39.3	2.7	8.0	5.7	4.5	1	1	1	2	2	2	0	Prefoldin	subunit
Cauli_AT	PF03233.13	gi|384434998|ref|YP_005644356.1|	-	0.84	9.5	23.7	4.1	7.3	6.7	3.1	1	1	1	2	2	2	0	Aphid	transmission	protein
YtxH	PF12732.7	gi|384434998|ref|YP_005644356.1|	-	0.9	10.1	8.1	3.8e+02	1.7	8.1	3.1	1	1	0	1	1	1	0	YtxH-like	protein
ApoC-I	PF04691.12	gi|384434998|ref|YP_005644356.1|	-	0.91	9.5	21.2	6.2	6.8	1.2	5.3	2	1	3	5	5	5	0	Apolipoprotein	C-I	(ApoC-1)
RPW8	PF05659.11	gi|384434998|ref|YP_005644356.1|	-	1.1	8.9	25.5	1.2	8.8	7.6	3.3	1	1	2	3	3	3	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Sigma70_ner	PF04546.13	gi|384434998|ref|YP_005644356.1|	-	1.2	9.0	24.9	1.2	8.9	16.7	2.8	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
FliD_C	PF07195.12	gi|384434998|ref|YP_005644356.1|	-	1.3	8.4	12.9	3.2	7.1	4.5	3.1	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
HalX	PF08663.10	gi|384434998|ref|YP_005644356.1|	-	1.3	9.4	19.6	10	6.5	1.0	5.0	2	1	3	5	5	5	0	HalX	domain
Nup88	PF10168.9	gi|384434998|ref|YP_005644356.1|	-	1.3	6.7	24.2	1.9	6.2	24.2	1.2	1	0	0	1	1	1	0	Nuclear	pore	component
ERM	PF00769.19	gi|384434998|ref|YP_005644356.1|	-	1.4	8.7	36.2	3.3	7.5	34.1	2.1	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
DUF812	PF05667.11	gi|384434998|ref|YP_005644356.1|	-	1.4	7.7	32.7	7.2	5.4	33.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Tex_N	PF09371.10	gi|384434998|ref|YP_005644356.1|	-	1.4	8.6	25.0	0.96	9.1	7.9	3.3	1	1	2	3	3	3	0	Tex-like	protein	N-terminal	domain
TBCA	PF02970.16	gi|384434998|ref|YP_005644356.1|	-	1.4	9.3	26.7	3.9	7.9	7.0	3.8	1	1	2	3	3	3	0	Tubulin	binding	cofactor	A
FAM76	PF16046.5	gi|384434998|ref|YP_005644356.1|	-	1.8	7.9	29.3	0.5	9.7	11.0	2.2	1	1	1	2	2	2	0	FAM76	protein
Sec2p	PF06428.11	gi|384434998|ref|YP_005644356.1|	-	1.8	8.6	29.0	2	8.4	6.3	3.4	1	1	2	3	3	3	0	GDP/GTP	exchange	factor	Sec2p
Lipoprotein_7	PF01540.16	gi|384434998|ref|YP_005644356.1|	-	2.3	7.4	24.4	22	4.2	14.7	2.4	1	1	0	1	1	1	0	Adhesin	lipoprotein
KLRAQ	PF10205.9	gi|384434998|ref|YP_005644356.1|	-	2.4	8.5	25.8	6	7.2	10.3	3.0	1	1	1	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
TPR_MLP1_2	PF07926.12	gi|384434998|ref|YP_005644356.1|	-	2.4	8.2	33.7	1.3	9.1	22.4	2.2	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF2721	PF11026.8	gi|384434998|ref|YP_005644356.1|	-	2.6	8.0	11.3	6.2	6.7	2.4	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
Glutaredoxin2_C	PF04399.13	gi|384434998|ref|YP_005644356.1|	-	2.6	7.9	10.0	11	5.9	0.4	3.3	1	1	2	3	3	3	0	Glutaredoxin	2,	C	terminal	domain
PspB	PF06667.12	gi|384434998|ref|YP_005644356.1|	-	2.6	8.2	20.6	2.9	8.0	3.4	3.7	1	1	1	3	3	3	0	Phage	shock	protein	B
Atg14	PF10186.9	gi|384434998|ref|YP_005644356.1|	-	2.7	7.0	32.2	1.8	7.6	23.1	2.1	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Prominin	PF05478.11	gi|384434998|ref|YP_005644356.1|	-	2.9	5.8	17.2	5.8	4.7	17.1	1.4	1	1	0	1	1	1	0	Prominin
GrpE	PF01025.19	gi|384434998|ref|YP_005644356.1|	-	2.9	7.5	27.6	45	3.6	16.6	3.5	1	1	2	3	3	3	0	GrpE
CC2-LZ	PF16516.5	gi|384434998|ref|YP_005644356.1|	-	2.9	8.3	25.4	11	6.5	5.8	3.4	1	1	2	3	3	3	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
DUF489	PF04356.12	gi|384434998|ref|YP_005644356.1|	-	3.1	7.8	15.7	6.8	6.7	5.0	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF489)
DUF4446	PF14584.6	gi|384434998|ref|YP_005644356.1|	-	3.3	7.7	21.1	4.2	7.3	5.1	3.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF4446)
DUF4559	PF15112.6	gi|384434998|ref|YP_005644356.1|	-	3.5	7.2	23.3	24	4.5	23.4	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
Occludin_ELL	PF07303.13	gi|384434998|ref|YP_005644356.1|	-	3.5	8.4	22.1	23	5.8	9.4	3.6	1	1	3	4	4	4	0	Occludin	homology	domain
FUSC-like	PF12805.7	gi|384434998|ref|YP_005644356.1|	-	4	6.5	8.4	14	4.7	8.1	1.9	1	1	0	1	1	1	0	FUSC-like	inner	membrane	protein	yccS
UPF0242	PF06785.11	gi|384434998|ref|YP_005644356.1|	-	4.1	7.5	35.2	1.7	8.7	23.5	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Noelin-1	PF12308.8	gi|384434998|ref|YP_005644356.1|	-	4.2	7.4	16.8	4.7	7.2	2.1	3.3	1	1	2	3	3	3	0	Neurogenesis	glycoprotein
SOAR	PF16533.5	gi|384434998|ref|YP_005644356.1|	-	4.4	7.3	23.6	24	5.0	7.9	3.6	1	1	3	4	4	4	0	STIM1	Orai1-activating	region
Prefoldin	PF02996.17	gi|384434998|ref|YP_005644356.1|	-	4.5	7.2	26.4	4.2	7.3	2.8	4.6	1	1	3	5	5	5	0	Prefoldin	subunit
CREPT	PF16566.5	gi|384434998|ref|YP_005644356.1|	-	5.5	7.1	25.9	7.4	6.7	14.5	2.5	1	1	1	2	2	2	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
Sec34	PF04136.15	gi|384434998|ref|YP_005644356.1|	-	5.8	6.8	20.3	1.8	8.5	8.8	2.6	1	1	1	2	2	2	0	Sec34-like	family
DUF4795	PF16043.5	gi|384434998|ref|YP_005644356.1|	-	6.4	6.3	28.7	2.6e+02	1.1	28.7	3.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
DUF3294	PF07957.11	gi|384434998|ref|YP_005644356.1|	-	6.4	6.5	18.3	3.4	7.4	0.8	4.3	2	1	3	5	5	4	0	Protein	of	unknown	function	(DUF3294)
Hemagglutinin	PF00509.18	gi|384434998|ref|YP_005644356.1|	-	6.6	5.0	11.6	5.7	5.2	3.6	2.2	1	1	1	2	2	2	0	Haemagglutinin
PHA_gran_rgn	PF09650.10	gi|384434998|ref|YP_005644356.1|	-	6.8	7.1	16.3	12	6.2	1.4	4.0	1	1	3	4	4	4	0	Putative	polyhydroxyalkanoic	acid	system	protein	(PHA_gran_rgn)
Cep57_MT_bd	PF06657.13	gi|384434998|ref|YP_005644356.1|	-	6.8	7.2	30.4	2.5	8.6	11.9	3.3	1	1	2	3	3	3	0	Centrosome	microtubule-binding	domain	of	Cep57
Spectrin	PF00435.21	gi|384434998|ref|YP_005644356.1|	-	7.7	7.1	25.2	2.5	8.6	17.3	2.9	1	1	2	3	3	3	0	Spectrin	repeat
zf-C4H2	PF10146.9	gi|384434998|ref|YP_005644356.1|	-	8	6.7	35.4	0.26	11.6	17.0	2.4	1	1	1	2	2	2	0	Zinc	finger-containing	protein
MCC-bdg_PDZ	PF10506.9	gi|384434998|ref|YP_005644356.1|	-	8.4	6.5	22.9	8.9	6.4	1.7	4.9	2	1	3	5	5	5	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
Seryl_tRNA_N	PF02403.22	gi|384434998|ref|YP_005644356.1|	-	8.6	6.6	32.2	5.4	7.3	14.2	3.8	3	1	2	5	5	3	0	Seryl-tRNA	synthetase	N-terminal	domain
Goodbye	PF17109.5	gi|384434998|ref|YP_005644356.1|	-	9.2	6.7	15.3	5.9	7.4	3.0	3.4	1	1	2	3	3	3	0	fungal	STAND	N-terminal	Goodbye	domain
Fmp27_WPPW	PF10359.9	gi|384434998|ref|YP_005644356.1|	-	9.4	5.0	30.7	22	3.7	20.1	2.3	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
HMMR_N	PF15905.5	gi|384434998|ref|YP_005644356.1|	-	10	5.5	36.8	21	4.5	36.8	1.5	1	1	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
Rhodanese	PF00581.20	gi|384434999|ref|YP_005644357.1|	-	2.4e-40	137.3	0.1	3.9e-20	72.4	0.0	2.2	2	0	0	2	2	2	2	Rhodanese-like	domain
Fer4_10	PF13237.6	gi|384435002|ref|YP_005644360.1|	-	2.9e-07	30.5	4.3	4.9e-07	29.7	4.3	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384435002|ref|YP_005644360.1|	-	4.7e-05	23.9	16.8	0.0003	21.3	9.2	2.4	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384435002|ref|YP_005644360.1|	-	0.00031	20.9	4.6	0.00031	20.9	4.6	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384435002|ref|YP_005644360.1|	-	0.0027	17.7	7.9	0.059	13.5	0.4	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384435002|ref|YP_005644360.1|	-	0.022	14.9	6.6	0.063	13.4	6.6	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384435002|ref|YP_005644360.1|	-	0.03	15.3	7.7	0.32	12.0	0.3	2.5	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4	PF00037.27	gi|384435002|ref|YP_005644360.1|	-	0.047	13.5	0.8	0.047	13.5	0.8	2.8	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|384435002|ref|YP_005644360.1|	-	0.12	12.1	5.4	1.4	8.7	5.8	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_17	PF13534.6	gi|384435002|ref|YP_005644360.1|	-	0.71	10.5	10.3	13	6.4	7.5	2.7	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384435002|ref|YP_005644360.1|	-	0.87	10.1	14.1	4	8.0	8.8	3.0	2	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|384435002|ref|YP_005644360.1|	-	1.2	9.8	9.1	1.9	9.2	1.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF772	PF05598.11	gi|384435003|ref|YP_005644361.1|	-	0.00066	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384435003|ref|YP_005644361.1|	-	0.041	13.5	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
DUF929	PF06053.11	gi|384435004|ref|YP_005644362.1|	-	4.1e-64	216.3	9.6	6e-64	215.7	9.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
DUF4786	PF16027.5	gi|384435004|ref|YP_005644362.1|	-	0.021	15.4	0.0	0.051	14.1	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4786)
Thioredoxin_7	PF13899.6	gi|384435004|ref|YP_005644362.1|	-	0.055	13.7	0.0	0.098	12.9	0.0	1.5	1	0	0	1	1	1	0	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|384435004|ref|YP_005644362.1|	-	0.14	12.6	0.0	0.43	11.1	0.0	1.7	1	0	0	1	1	1	0	Thioredoxin-like	domain
AhpC-TSA	PF00578.21	gi|384435004|ref|YP_005644362.1|	-	0.15	12.0	0.0	0.23	11.4	0.0	1.3	1	0	0	1	1	1	0	AhpC/TSA	family
VKOR	PF07884.14	gi|384435005|ref|YP_005644363.1|	-	1.8e-19	70.1	12.6	2e-19	70.0	12.6	1.0	1	0	0	1	1	1	1	Vitamin	K	epoxide	reductase	family
zf-C2H2_jaz	PF12171.8	gi|384435006|ref|YP_005644364.1|	-	0.0046	17.2	0.3	0.0085	16.4	0.3	1.4	1	0	0	1	1	1	1	Zinc-finger	double-stranded	RNA-binding
DDE_3	PF13358.6	gi|384435007|ref|YP_005644365.1|	-	1.9e-18	66.6	0.0	3.3e-18	65.9	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384435007|ref|YP_005644365.1|	-	8.6e-15	54.1	0.2	1.6e-13	50.1	0.1	2.8	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384435007|ref|YP_005644365.1|	-	3e-07	30.0	0.1	1e-06	28.4	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384435007|ref|YP_005644365.1|	-	1.3e-06	28.6	0.7	2.7e-06	27.6	0.2	1.7	2	0	0	2	2	2	1	Transposase
HTH_17	PF12728.7	gi|384435007|ref|YP_005644365.1|	-	1.9e-06	28.0	1.2	0.00031	20.9	0.1	3.4	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|384435007|ref|YP_005644365.1|	-	2.9e-06	27.3	0.0	8.9e-06	25.7	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384435007|ref|YP_005644365.1|	-	4.5e-05	23.5	2.8	0.00016	21.7	2.5	2.1	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384435007|ref|YP_005644365.1|	-	0.00018	21.5	0.1	0.00045	20.2	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384435007|ref|YP_005644365.1|	-	0.00063	20.3	0.0	0.0019	18.7	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384435007|ref|YP_005644365.1|	-	0.0015	18.2	0.0	0.0044	16.7	0.0	1.7	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384435007|ref|YP_005644365.1|	-	0.0017	18.5	0.2	0.0074	16.4	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384435007|ref|YP_005644365.1|	-	0.018	14.8	0.0	0.038	13.8	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384435007|ref|YP_005644365.1|	-	0.029	14.5	0.5	0.15	12.2	0.1	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384435007|ref|YP_005644365.1|	-	0.03	13.3	0.1	0.061	12.3	0.1	1.4	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384435007|ref|YP_005644365.1|	-	0.044	13.8	0.0	0.11	12.5	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384435007|ref|YP_005644365.1|	-	0.056	13.5	0.0	0.18	11.9	0.0	1.9	1	0	0	1	1	1	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384435007|ref|YP_005644365.1|	-	0.079	12.4	0.0	0.21	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
rve	PF00665.26	gi|384435007|ref|YP_005644365.1|	-	0.15	12.2	0.0	0.48	10.6	0.0	1.8	2	0	0	2	2	2	0	Integrase	core	domain
DUF1059	PF06348.11	gi|384435008|ref|YP_005644366.1|	-	4e-23	81.4	0.6	4.9e-23	81.1	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1059)
DUF1059	PF06348.11	gi|384435009|ref|YP_005644367.1|	-	2.2e-48	162.3	0.1	2.8e-24	85.1	0.0	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1059)
Ogr_Delta	PF04606.12	gi|384435009|ref|YP_005644367.1|	-	0.053	13.5	0.0	1.1	9.2	0.0	2.3	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
MinE	PF03776.14	gi|384435009|ref|YP_005644367.1|	-	0.084	12.9	0.0	0.73	9.9	0.0	2.3	1	1	1	2	2	2	0	Septum	formation	topological	specificity	factor	MinE
PqqA	PF08042.11	gi|384435009|ref|YP_005644367.1|	-	2.2	8.5	3.4	28	4.9	0.4	2.4	2	0	0	2	2	2	0	PqqA	family
YoaP	PF14268.6	gi|384435010|ref|YP_005644368.1|	-	1.2	8.7	5.0	12	5.5	0.4	2.8	3	0	0	3	3	3	0	YoaP-like
ResIII	PF04851.15	gi|384435011|ref|YP_005644369.1|	-	2.1e-24	86.5	0.0	4.5e-24	85.4	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|384435011|ref|YP_005644369.1|	-	5e-18	65.5	0.0	1.5e-17	64.0	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|384435011|ref|YP_005644369.1|	-	5.2e-11	42.6	0.0	2.5e-10	40.4	0.0	2.1	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
ERCC3_RAD25_C	PF16203.5	gi|384435011|ref|YP_005644369.1|	-	9.4e-09	34.8	0.0	1.9e-08	33.8	0.0	1.5	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
T2SSE	PF00437.20	gi|384435011|ref|YP_005644369.1|	-	0.00031	19.9	0.0	0.0008	18.5	0.0	1.6	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
PhoH	PF02562.16	gi|384435011|ref|YP_005644369.1|	-	0.018	14.5	0.0	0.038	13.4	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_22	PF13401.6	gi|384435011|ref|YP_005644369.1|	-	0.027	14.7	0.1	0.56	10.5	0.0	3.0	3	1	0	3	3	3	0	AAA	domain
DUF2075	PF09848.9	gi|384435011|ref|YP_005644369.1|	-	0.13	11.5	0.0	0.38	9.9	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
EamA	PF00892.20	gi|384435012|ref|YP_005644370.1|	-	7.8e-26	90.9	44.0	1.1e-15	58.0	19.5	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
UPF0060	PF02694.15	gi|384435012|ref|YP_005644370.1|	-	0.033	14.4	3.6	0.033	14.4	3.6	2.4	2	1	0	2	2	2	0	Uncharacterised	BCR,	YnfA/UPF0060	family
DoxD	PF04173.13	gi|384435013|ref|YP_005644371.1|	-	4.7e-67	225.1	5.6	5.3e-67	224.9	5.6	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.12	gi|384435013|ref|YP_005644371.1|	-	0.00042	20.8	10.5	0.00042	20.8	10.5	2.1	2	1	0	2	2	2	1	DoxX
DoxA	PF07680.11	gi|384435014|ref|YP_005644372.1|	-	3.4e-42	143.5	0.0	4.2e-42	143.2	0.0	1.1	1	0	0	1	1	1	1	TQO	small	subunit	DoxA
Whirly	PF08536.11	gi|384435014|ref|YP_005644372.1|	-	0.1	12.4	0.1	1.8	8.4	0.1	2.2	1	1	0	1	1	1	0	Whirly	transcription	factor
HEPN	PF05168.14	gi|384435015|ref|YP_005644373.1|	-	7.1e-21	74.5	0.6	8.1e-21	74.3	0.6	1.0	1	0	0	1	1	1	1	HEPN	domain
PaREP1	PF05942.11	gi|384435015|ref|YP_005644373.1|	-	0.011	15.7	0.5	0.013	15.4	0.5	1.1	1	0	0	1	1	1	0	Archaeal	PaREP1/PaREP8	family
DUF772	PF05598.11	gi|384435016|ref|YP_005644374.1|	-	0.00064	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384435016|ref|YP_005644374.1|	-	0.038	13.6	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
NTP_transf_2	PF01909.23	gi|384435017|ref|YP_005644375.1|	-	3.5e-06	27.2	0.3	4.3e-06	26.9	0.3	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384435017|ref|YP_005644375.1|	-	0.00069	19.6	0.1	0.00087	19.3	0.1	1.3	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
YdjM	PF04307.14	gi|384435018|ref|YP_005644376.1|	-	5.6e-11	42.0	6.2	2.7e-09	36.5	5.7	2.8	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Thermopsin	PF05317.11	gi|384435019|ref|YP_005644377.1|	-	1.1e-65	221.7	16.2	1.1e-65	221.7	16.2	3.1	2	1	1	3	3	3	1	Thermopsin
DDE_Tnp_1	PF01609.21	gi|384435020|ref|YP_005644378.1|	-	2.2e-15	56.9	0.4	2.9e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_5	PF13737.6	gi|384435020|ref|YP_005644378.1|	-	2.9e-08	34.0	0.0	9.8e-08	32.3	0.0	1.8	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF4298	PF14131.6	gi|384435020|ref|YP_005644378.1|	-	0.046	13.7	0.7	0.24	11.4	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
DEAD	PF00270.29	gi|384435021|ref|YP_005644379.1|	-	3.9e-43	147.3	0.0	7.8e-43	146.3	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|384435021|ref|YP_005644379.1|	-	7.5e-33	113.2	0.1	6.6e-31	106.9	0.0	2.6	2	1	1	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|384435021|ref|YP_005644379.1|	-	1e-08	35.4	0.0	1.8e-08	34.6	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.6	gi|384435021|ref|YP_005644379.1|	-	0.028	14.7	1.8	0.28	11.5	1.8	2.6	1	1	0	1	1	1	0	AAA	domain
T4SS-DNA_transf	PF02534.14	gi|384435021|ref|YP_005644379.1|	-	0.049	12.4	0.1	0.14	11.0	0.0	1.8	2	0	0	2	2	2	0	Type	IV	secretory	system	Conjugative	DNA	transfer
RPN5_C	PF18098.1	gi|384435021|ref|YP_005644379.1|	-	0.06	13.5	0.1	0.15	12.2	0.1	1.7	1	0	0	1	1	1	0	26S	proteasome	regulatory	subunit	RPN5	C-terminal	domain
DHHA1	PF02272.19	gi|384435021|ref|YP_005644379.1|	-	0.11	13.0	0.1	0.5	10.8	0.0	2.1	2	0	0	2	2	2	0	DHHA1	domain
MFS_1	PF07690.16	gi|384435022|ref|YP_005644380.1|	-	1.3e-24	86.8	44.6	5e-15	55.3	19.4	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
CbiQ	PF02361.16	gi|384435024|ref|YP_005644382.1|	-	2.4e-10	40.4	15.5	2.4e-10	40.4	15.5	1.9	3	0	0	3	3	3	1	Cobalt	transport	protein
ABC_tran	PF00005.27	gi|384435025|ref|YP_005644383.1|	-	2.7e-49	167.2	0.3	1.2e-23	84.2	0.1	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|384435025|ref|YP_005644383.1|	-	4.3e-18	66.2	5.9	0.0001	22.2	0.6	4.3	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384435025|ref|YP_005644383.1|	-	7.2e-12	45.2	2.0	2.7e-06	27.0	0.1	3.2	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|384435025|ref|YP_005644383.1|	-	3.6e-11	42.6	3.6	7.7e-05	22.4	0.1	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384435025|ref|YP_005644383.1|	-	4.5e-09	37.1	0.3	0.00014	22.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|384435025|ref|YP_005644383.1|	-	1.8e-07	31.7	0.0	0.0074	16.7	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_15	PF13175.6	gi|384435025|ref|YP_005644383.1|	-	4.3e-07	30.0	1.4	1.5e-05	24.9	0.5	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
T2SSE	PF00437.20	gi|384435025|ref|YP_005644383.1|	-	1.2e-06	27.8	0.5	0.0093	15.1	0.1	2.4	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
AAA_30	PF13604.6	gi|384435025|ref|YP_005644383.1|	-	1.8e-06	27.8	1.0	0.039	13.7	0.1	3.0	2	1	0	2	2	2	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|384435025|ref|YP_005644383.1|	-	2.7e-06	27.4	4.4	0.014	15.3	0.2	2.7	2	1	0	2	2	2	2	RsgA	GTPase
NACHT	PF05729.12	gi|384435025|ref|YP_005644383.1|	-	3.6e-06	27.0	0.6	0.01	15.7	0.1	2.4	2	0	0	2	2	2	2	NACHT	domain
AAA_22	PF13401.6	gi|384435025|ref|YP_005644383.1|	-	4.5e-06	27.0	4.0	0.096	13.0	0.1	3.6	2	1	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.22	gi|384435025|ref|YP_005644383.1|	-	4.9e-05	22.6	0.7	0.13	11.5	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|384435025|ref|YP_005644383.1|	-	5.5e-05	22.6	0.4	0.029	13.7	0.0	2.8	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
NTPase_1	PF03266.15	gi|384435025|ref|YP_005644383.1|	-	0.00011	22.2	3.7	0.087	12.7	0.2	3.1	3	0	0	3	3	2	2	NTPase
ABC_ATPase	PF09818.9	gi|384435025|ref|YP_005644383.1|	-	0.00011	21.1	6.7	0.053	12.3	0.7	4.4	5	0	0	5	5	5	1	Predicted	ATPase	of	the	ABC	class
MMR_HSR1	PF01926.23	gi|384435025|ref|YP_005644383.1|	-	0.00012	22.2	0.9	0.85	9.7	0.0	3.0	3	0	0	3	3	3	2	50S	ribosome-binding	GTPase
AAA_7	PF12775.7	gi|384435025|ref|YP_005644383.1|	-	0.00013	21.6	1.3	0.3	10.6	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
FtsK_SpoIIIE	PF01580.18	gi|384435025|ref|YP_005644383.1|	-	0.00014	21.3	1.5	0.0096	15.3	0.0	2.3	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
ATPase_2	PF01637.18	gi|384435025|ref|YP_005644383.1|	-	0.00017	21.6	0.3	0.41	10.5	0.1	2.5	2	0	0	2	2	2	2	ATPase	domain	predominantly	from	Archaea
AAA_25	PF13481.6	gi|384435025|ref|YP_005644383.1|	-	0.00018	21.2	0.9	0.41	10.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|384435025|ref|YP_005644383.1|	-	0.00019	21.2	0.2	0.52	10.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|384435025|ref|YP_005644383.1|	-	0.00038	21.0	0.6	2.1	8.9	0.0	3.3	3	0	0	3	3	3	1	AAA	domain
cobW	PF02492.19	gi|384435025|ref|YP_005644383.1|	-	0.00065	19.3	2.3	0.088	12.4	0.3	2.7	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
PIF1	PF05970.14	gi|384435025|ref|YP_005644383.1|	-	0.0014	17.8	0.7	1.1	8.3	0.2	3.3	4	0	0	4	4	4	1	PIF1-like	helicase
AAA_14	PF13173.6	gi|384435025|ref|YP_005644383.1|	-	0.0016	18.4	0.1	2.1	8.4	0.1	3.0	3	1	0	3	3	2	1	AAA	domain
PduV-EutP	PF10662.9	gi|384435025|ref|YP_005644383.1|	-	0.0025	17.6	1.3	0.69	9.7	0.1	3.1	3	0	0	3	3	3	1	Ethanolamine	utilisation	-	propanediol	utilisation
PhoH	PF02562.16	gi|384435025|ref|YP_005644383.1|	-	0.003	17.1	0.5	0.21	11.0	0.3	2.4	2	0	0	2	2	2	1	PhoH-like	protein
AAA_5	PF07728.14	gi|384435025|ref|YP_005644383.1|	-	0.0037	17.3	0.9	3.6	7.6	0.0	2.8	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ATP_bind_1	PF03029.17	gi|384435025|ref|YP_005644383.1|	-	0.0041	16.9	0.3	6.1	6.5	0.1	3.2	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
TsaE	PF02367.17	gi|384435025|ref|YP_005644383.1|	-	0.0046	17.0	1.8	0.43	10.6	0.5	2.8	3	0	0	3	3	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_33	PF13671.6	gi|384435025|ref|YP_005644383.1|	-	0.0053	16.9	0.3	3.5	7.8	0.0	2.7	3	0	0	3	3	2	0	AAA	domain
DUF815	PF05673.13	gi|384435025|ref|YP_005644383.1|	-	0.0053	15.9	1.1	2	7.5	0.0	2.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
MobB	PF03205.14	gi|384435025|ref|YP_005644383.1|	-	0.0054	16.6	5.6	0.15	12.0	0.3	3.5	4	0	0	4	4	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.22	gi|384435025|ref|YP_005644383.1|	-	0.0057	17.0	0.2	6.5	7.2	0.0	2.7	2	0	0	2	2	2	0	RNA	helicase
AAA	PF00004.29	gi|384435025|ref|YP_005644383.1|	-	0.0062	17.0	0.4	0.65	10.4	0.0	2.7	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DLIC	PF05783.11	gi|384435025|ref|YP_005644383.1|	-	0.0066	15.3	2.2	1.5	7.6	0.0	2.1	2	0	0	2	2	2	2	Dynein	light	intermediate	chain	(DLIC)
Zeta_toxin	PF06414.12	gi|384435025|ref|YP_005644383.1|	-	0.0071	15.7	0.2	4.4	6.5	0.0	2.5	2	0	0	2	2	2	0	Zeta	toxin
G-alpha	PF00503.20	gi|384435025|ref|YP_005644383.1|	-	0.0075	15.5	0.3	1.6	7.8	0.1	2.4	2	0	0	2	2	2	1	G-protein	alpha	subunit
Viral_helicase1	PF01443.18	gi|384435025|ref|YP_005644383.1|	-	0.0079	16.0	0.1	0.88	9.3	0.0	2.5	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
DUF87	PF01935.17	gi|384435025|ref|YP_005644383.1|	-	0.012	15.7	4.6	0.26	11.4	0.4	2.9	2	1	0	3	3	3	0	Helicase	HerA,	central	domain
SbcCD_C	PF13558.6	gi|384435025|ref|YP_005644383.1|	-	0.013	15.7	0.0	0.47	10.7	0.0	2.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Septin	PF00735.18	gi|384435025|ref|YP_005644383.1|	-	0.015	14.6	0.8	0.51	9.6	0.1	2.2	2	0	0	2	2	2	0	Septin
ATPase	PF06745.13	gi|384435025|ref|YP_005644383.1|	-	0.018	14.4	5.0	0.44	9.9	0.1	3.2	3	0	0	3	3	3	0	KaiC
ATP-synt_ab	PF00006.25	gi|384435025|ref|YP_005644383.1|	-	0.02	14.5	0.2	0.84	9.2	0.0	2.5	3	0	0	3	3	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_19	PF13245.6	gi|384435025|ref|YP_005644383.1|	-	0.024	15.0	3.1	1.9	8.8	0.2	2.8	2	1	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|384435025|ref|YP_005644383.1|	-	0.026	14.3	0.3	4.7	6.9	0.1	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Resolvase	PF00239.21	gi|384435025|ref|YP_005644383.1|	-	0.027	14.6	0.2	6.5	6.8	0.1	2.3	2	0	0	2	2	2	0	Resolvase,	N	terminal	domain
Sigma54_activat	PF00158.26	gi|384435025|ref|YP_005644383.1|	-	0.032	14.0	0.4	1.2	8.8	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
DUF2791	PF10923.8	gi|384435025|ref|YP_005644383.1|	-	0.043	12.7	0.1	0.99	8.2	0.0	2.1	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
TniB	PF05621.11	gi|384435025|ref|YP_005644383.1|	-	0.043	13.2	0.8	8	5.8	0.0	3.1	3	0	0	3	3	3	0	Bacterial	TniB	protein
APS_kinase	PF01583.20	gi|384435025|ref|YP_005644383.1|	-	0.047	13.6	0.9	2.1	8.2	0.0	2.9	3	0	0	3	3	3	0	Adenylylsulphate	kinase
KAP_NTPase	PF07693.14	gi|384435025|ref|YP_005644383.1|	-	0.051	12.8	0.8	2.5	7.2	0.1	2.6	3	0	0	3	3	3	0	KAP	family	P-loop	domain
Gtr1_RagA	PF04670.12	gi|384435025|ref|YP_005644383.1|	-	0.065	12.6	2.2	5.2	6.4	0.2	2.3	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
AAA_13	PF13166.6	gi|384435025|ref|YP_005644383.1|	-	0.078	11.6	0.1	1.2	7.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Ploopntkinase3	PF18751.1	gi|384435025|ref|YP_005644383.1|	-	0.1	12.5	0.1	33	4.3	0.0	3.0	3	0	0	3	3	3	0	P-loop	Nucleotide	Kinase3
AAA_28	PF13521.6	gi|384435025|ref|YP_005644383.1|	-	0.11	12.7	1.0	20	5.4	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
Pox_A32	PF04665.12	gi|384435025|ref|YP_005644383.1|	-	0.14	11.6	1.1	1.4	8.3	0.2	2.3	2	0	0	2	2	2	0	Poxvirus	A32	protein
IstB_IS21	PF01695.17	gi|384435025|ref|YP_005644383.1|	-	0.17	11.6	0.8	8.4	6.1	0.0	2.9	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
DAP3	PF10236.9	gi|384435025|ref|YP_005644383.1|	-	0.21	10.7	1.1	6.5	5.8	0.1	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
DEAD	PF00270.29	gi|384435025|ref|YP_005644383.1|	-	0.36	10.6	1.4	2.5	7.8	0.1	2.8	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
HAD_2	PF13419.6	gi|384435027|ref|YP_005644385.1|	-	2.2e-13	50.7	0.0	3.3e-13	50.1	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384435027|ref|YP_005644385.1|	-	6.8e-09	36.3	0.0	2.5e-08	34.5	0.0	2.0	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|384435027|ref|YP_005644385.1|	-	0.00081	19.5	0.0	0.0028	17.7	0.0	1.9	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Methyltransf_11	PF08241.12	gi|384435028|ref|YP_005644386.1|	-	4e-19	69.1	0.0	5.8e-19	68.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384435028|ref|YP_005644386.1|	-	1.8e-18	66.8	0.0	2.9e-18	66.1	0.0	1.4	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|384435028|ref|YP_005644386.1|	-	5.6e-17	62.2	0.0	8.3e-17	61.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384435028|ref|YP_005644386.1|	-	1.7e-14	54.0	0.0	2.1e-14	53.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|384435028|ref|YP_005644386.1|	-	1.3e-09	38.6	0.0	2.1e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|384435028|ref|YP_005644386.1|	-	3.1e-08	33.3	0.0	5.1e-08	32.5	0.0	1.3	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|384435028|ref|YP_005644386.1|	-	7.3e-07	28.9	0.0	8.9e-07	28.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
FtsJ	PF01728.19	gi|384435028|ref|YP_005644386.1|	-	3.8e-06	27.1	0.0	5.6e-06	26.6	0.0	1.3	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
PrmA	PF06325.13	gi|384435028|ref|YP_005644386.1|	-	5e-06	26.1	0.0	6.2e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.20	gi|384435028|ref|YP_005644386.1|	-	7.5e-06	25.2	0.0	1.1e-05	24.6	0.0	1.3	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltr_RsmB-F	PF01189.17	gi|384435028|ref|YP_005644386.1|	-	8.4e-06	25.6	0.0	1.5e-05	24.7	0.0	1.3	1	1	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
PCMT	PF01135.19	gi|384435028|ref|YP_005644386.1|	-	3.6e-05	23.6	0.0	5e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_8	PF05148.15	gi|384435028|ref|YP_005644386.1|	-	9.1e-05	22.4	0.0	0.0008	19.3	0.0	1.9	1	1	0	1	1	1	1	Hypothetical	methyltransferase
GidB	PF02527.15	gi|384435028|ref|YP_005644386.1|	-	0.00012	21.4	0.0	0.00018	20.9	0.0	1.2	1	0	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Methyltransf_32	PF13679.6	gi|384435028|ref|YP_005644386.1|	-	0.00018	21.5	0.0	0.00029	20.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|384435028|ref|YP_005644386.1|	-	0.00025	21.0	0.0	0.00043	20.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|384435028|ref|YP_005644386.1|	-	0.0003	20.3	0.0	0.00058	19.3	0.0	1.4	1	1	1	2	2	2	1	Tellurite	resistance	protein	TehB
Met_10	PF02475.16	gi|384435028|ref|YP_005644386.1|	-	0.0005	19.9	0.0	0.00064	19.5	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
MetW	PF07021.12	gi|384435028|ref|YP_005644386.1|	-	0.0017	18.0	0.0	0.0027	17.3	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_9	PF08003.11	gi|384435028|ref|YP_005644386.1|	-	0.0021	17.1	0.0	0.0024	16.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
NodS	PF05401.11	gi|384435028|ref|YP_005644386.1|	-	0.0041	16.8	0.0	0.0051	16.5	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
DREV	PF05219.12	gi|384435028|ref|YP_005644386.1|	-	0.0055	15.8	0.0	0.0066	15.6	0.0	1.4	1	1	0	1	1	1	1	DREV	methyltransferase
Methyltransf_4	PF02390.17	gi|384435028|ref|YP_005644386.1|	-	0.011	15.2	0.0	0.02	14.4	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
Cons_hypoth95	PF03602.15	gi|384435028|ref|YP_005644386.1|	-	0.013	15.2	0.0	0.021	14.5	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
AdoMet_MTase	PF07757.13	gi|384435028|ref|YP_005644386.1|	-	0.049	14.0	0.0	0.15	12.4	0.0	1.7	2	0	0	2	2	2	0	Predicted	AdoMet-dependent	methyltransferase
NB-LRR	PF12061.8	gi|384435028|ref|YP_005644386.1|	-	0.059	12.7	0.0	0.079	12.3	0.0	1.1	1	0	0	1	1	1	0	Late	blight	resistance	protein	R1
N6_N4_Mtase	PF01555.18	gi|384435028|ref|YP_005644386.1|	-	0.069	12.8	0.0	0.13	11.9	0.0	1.5	2	0	0	2	2	2	0	DNA	methylase
DUF3212	PF11486.8	gi|384435028|ref|YP_005644386.1|	-	0.073	13.1	0.0	0.19	11.8	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3212)
AviRa	PF11599.8	gi|384435028|ref|YP_005644386.1|	-	0.13	11.7	0.0	0.21	11.0	0.0	1.3	1	0	0	1	1	1	0	RRNA	methyltransferase	AviRa
Methyltransf_15	PF09445.10	gi|384435028|ref|YP_005644386.1|	-	0.14	11.7	0.0	0.22	11.1	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF1286	PF06939.11	gi|384435030|ref|YP_005644388.1|	-	8.8e-45	151.6	10.2	1.4e-44	151.0	10.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1286)
YdjM	PF04307.14	gi|384435030|ref|YP_005644388.1|	-	0.012	14.9	1.9	0.021	14.2	1.9	1.6	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
SWIM	PF04434.17	gi|384435031|ref|YP_005644389.1|	-	0.0041	16.7	0.2	0.0068	16.1	0.2	1.3	1	0	0	1	1	1	1	SWIM	zinc	finger
DUF2102	PF09875.9	gi|384435031|ref|YP_005644389.1|	-	0.05	13.3	0.1	0.056	13.2	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2102)
GPI-anchored	PF10342.9	gi|384435031|ref|YP_005644389.1|	-	0.089	13.6	0.0	0.12	13.2	0.0	1.1	1	0	0	1	1	1	0	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
S6OS1	PF15676.5	gi|384435032|ref|YP_005644390.1|	-	0.0067	15.0	1.5	0.0079	14.7	1.5	1.0	1	0	0	1	1	1	1	Six6	opposite	strand	transcript	1	family
7kD_DNA_binding	PF02294.18	gi|384435033|ref|YP_005644391.1|	-	6e-40	135.1	3.8	6.8e-40	134.9	3.8	1.0	1	0	0	1	1	1	1	7kD	DNA-binding	domain
Oxidored_FMN	PF00724.20	gi|384435034|ref|YP_005644392.1|	-	1.5e-62	211.8	0.0	1.9e-62	211.5	0.0	1.1	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
NAD_binding_8	PF13450.6	gi|384435034|ref|YP_005644392.1|	-	8.6e-08	32.3	0.0	2.2e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|384435034|ref|YP_005644392.1|	-	3.1e-06	27.7	4.8	0.00093	19.7	0.4	4.1	4	0	0	4	4	4	1	Pyridine	nucleotide-disulphide	oxidoreductase
Dus	PF01207.17	gi|384435034|ref|YP_005644392.1|	-	3.9e-06	26.2	0.0	7.8e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
Pyr_redox_2	PF07992.14	gi|384435034|ref|YP_005644392.1|	-	4.7e-06	26.1	0.1	1.6e-05	24.3	0.0	1.9	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|384435034|ref|YP_005644392.1|	-	1.3e-05	25.0	0.1	4.1e-05	23.3	0.2	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|384435034|ref|YP_005644392.1|	-	8e-05	22.6	0.3	0.00015	21.7	0.3	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|384435034|ref|YP_005644392.1|	-	0.00095	18.5	0.0	1.1	8.5	0.0	2.5	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|384435034|ref|YP_005644392.1|	-	0.0017	17.7	0.0	0.0035	16.6	0.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|384435034|ref|YP_005644392.1|	-	0.0028	16.8	0.3	0.0044	16.2	0.3	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|384435034|ref|YP_005644392.1|	-	0.0033	16.2	0.8	0.0038	16.0	0.1	1.4	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|384435034|ref|YP_005644392.1|	-	0.0046	16.4	0.5	0.0076	15.6	0.5	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|384435034|ref|YP_005644392.1|	-	0.012	14.8	0.1	0.027	13.7	0.1	1.5	1	0	0	1	1	1	0	Thi4	family
FAD_binding_3	PF01494.19	gi|384435034|ref|YP_005644392.1|	-	0.017	14.4	0.4	0.026	13.8	0.4	1.2	1	0	0	1	1	1	0	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|384435034|ref|YP_005644392.1|	-	0.097	11.7	0.3	0.15	11.1	0.3	1.2	1	0	0	1	1	1	0	FAD	binding	domain
NAR	PF16251.5	gi|384435034|ref|YP_005644392.1|	-	0.16	12.7	0.0	0.37	11.5	0.0	1.6	1	0	0	1	1	1	0	Nucleic	acid-binding	domain	(NAR)
Amino_oxidase	PF01593.24	gi|384435034|ref|YP_005644392.1|	-	0.18	11.0	0.0	0.3	10.3	0.0	1.2	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Methyltransf_21	PF05050.12	gi|384435035|ref|YP_005644393.1|	-	8e-18	65.0	0.1	1.1e-17	64.6	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Met_10	PF02475.16	gi|384435035|ref|YP_005644393.1|	-	1.1e-07	31.8	0.5	2e-07	30.9	0.5	1.5	1	1	0	1	1	1	1	Met-10+	like-protein
TusA	PF01206.17	gi|384435035|ref|YP_005644393.1|	-	0.13	12.1	0.0	0.28	11.0	0.0	1.5	1	0	0	1	1	1	0	Sulfurtransferase	TusA
PBS_linker_poly	PF00427.21	gi|384435036|ref|YP_005644394.1|	-	0.044	13.8	0.4	0.16	12.0	0.0	2.0	2	1	0	2	2	2	0	Phycobilisome	Linker	polypeptide
DUF2857	PF11198.8	gi|384435036|ref|YP_005644394.1|	-	0.1	12.3	0.4	0.38	10.5	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2857)
AMP-binding	PF00501.28	gi|384435037|ref|YP_005644395.1|	-	8.1e-75	252.0	0.0	1.2e-74	251.4	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384435037|ref|YP_005644395.1|	-	7.1e-19	68.6	0.2	1.6e-18	67.4	0.2	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Transp_cyt_pur	PF02133.15	gi|384435038|ref|YP_005644396.1|	-	1.7e-83	280.9	39.5	1.9e-83	280.7	39.5	1.0	1	0	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
AA_permease_2	PF13520.6	gi|384435039|ref|YP_005644397.1|	-	3.2e-42	144.9	53.3	3.2e-42	144.9	53.3	2.6	1	1	2	3	3	3	1	Amino	acid	permease
AA_permease	PF00324.21	gi|384435039|ref|YP_005644397.1|	-	1.4e-23	83.3	72.3	5.3e-23	81.4	68.3	2.8	1	1	0	1	1	1	1	Amino	acid	permease
UL42	PF17638.2	gi|384435039|ref|YP_005644397.1|	-	0.1	12.6	0.1	0.1	12.6	0.1	2.7	3	0	0	3	3	3	0	HCMV	UL42
ELFV_dehydrog	PF00208.21	gi|384435040|ref|YP_005644398.1|	-	1.3e-70	237.9	4.4	2.1e-70	237.2	4.4	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|384435040|ref|YP_005644398.1|	-	2e-52	176.5	0.0	3.4e-52	175.7	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
AlaDh_PNT_C	PF01262.21	gi|384435040|ref|YP_005644398.1|	-	0.0045	16.3	0.7	0.012	14.9	0.6	1.8	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|384435040|ref|YP_005644398.1|	-	0.041	13.2	0.7	0.071	12.5	0.7	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Chromo_shadow	PF01393.19	gi|384435040|ref|YP_005644398.1|	-	0.063	13.4	0.8	7.7	6.7	0.0	3.5	4	0	0	4	4	4	0	Chromo	shadow	domain
DUF4898	PF16239.5	gi|384435041|ref|YP_005644399.1|	-	1.5e-31	108.1	3.2	1.8e-31	107.9	3.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4898)
MFS_1	PF07690.16	gi|384435042|ref|YP_005644400.1|	-	2.4e-52	178.1	45.1	1.7e-36	125.9	27.1	2.6	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384435042|ref|YP_005644400.1|	-	4.5e-11	42.3	30.4	7.3e-09	35.0	10.0	2.9	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
OATP	PF03137.20	gi|384435042|ref|YP_005644400.1|	-	0.00052	18.4	2.4	0.00052	18.4	2.4	4.1	2	2	0	4	4	4	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF4898	PF16239.5	gi|384435043|ref|YP_005644401.1|	-	1.5e-25	88.9	4.8	2.2e-25	88.4	4.8	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4898)
Ribosomal_S19	PF00203.21	gi|384435044|ref|YP_005644402.1|	-	0.042	13.7	0.4	3.2	7.7	0.0	2.4	1	1	1	2	2	2	0	Ribosomal	protein	S19
TAT_ubiq	PF07706.12	gi|384435044|ref|YP_005644402.1|	-	0.058	13.6	1.1	3.2	8.1	0.2	2.3	2	0	0	2	2	2	0	Aminotransferase	ubiquitination	site
S1FA	PF04689.13	gi|384435044|ref|YP_005644402.1|	-	1.6	8.9	6.3	0.93	9.7	1.0	2.3	2	0	0	2	2	2	0	DNA	binding	protein	S1FA
Hemerythrin	PF01814.23	gi|384435045|ref|YP_005644403.1|	-	0.0011	19.6	0.6	1.2	9.7	0.0	2.1	1	1	1	2	2	2	2	Hemerythrin	HHE	cation	binding	domain
ATLF	PF07737.11	gi|384435045|ref|YP_005644403.1|	-	0.016	14.5	2.1	0.02	14.2	2.1	1.1	1	0	0	1	1	1	0	Anthrax	toxin	lethal	factor,	N-	and	C-terminal	domain
Zn_Tnp_IS1595	PF12760.7	gi|384435046|ref|YP_005644404.1|	-	7.5e-06	25.8	3.1	0.0013	18.6	0.6	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|384435046|ref|YP_005644404.1|	-	2.4e-05	24.2	2.5	0.0046	16.9	0.3	2.2	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|384435046|ref|YP_005644404.1|	-	0.00031	20.2	2.3	0.1	12.2	0.5	2.4	2	0	0	2	2	2	2	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.10	gi|384435046|ref|YP_005644404.1|	-	0.00057	19.5	3.1	1.6	8.6	0.1	3.2	2	1	1	3	3	3	1	A2L	zinc	ribbon	domain
zinc_ribbon_10	PF10058.9	gi|384435046|ref|YP_005644404.1|	-	0.00093	18.9	1.8	0.058	13.1	0.3	2.3	2	0	0	2	2	2	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF2387	PF09526.10	gi|384435046|ref|YP_005644404.1|	-	0.0089	16.2	2.8	1	9.6	0.2	2.2	1	1	1	2	2	2	1	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_4	PF13717.6	gi|384435046|ref|YP_005644404.1|	-	0.0095	15.8	7.5	7.5	6.6	0.4	3.2	2	1	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|384435046|ref|YP_005644404.1|	-	0.01	15.9	2.8	2.7	8.2	0.0	3.2	3	0	0	3	3	3	0	Zinc	ribbon	domain
C1_2	PF03107.16	gi|384435046|ref|YP_005644404.1|	-	0.026	14.8	2.1	0.29	11.5	0.2	2.3	2	0	0	2	2	2	0	C1	domain
zf-NADH-PPase	PF09297.11	gi|384435046|ref|YP_005644404.1|	-	0.027	14.1	3.7	2	8.1	0.1	2.6	3	0	0	3	3	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2H2_3	PF13878.6	gi|384435046|ref|YP_005644404.1|	-	0.029	14.2	4.9	0.8	9.6	0.2	3.1	3	0	0	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
RNA_POL_M_15KD	PF02150.16	gi|384435046|ref|YP_005644404.1|	-	0.033	14.1	6.6	1.6	8.7	2.2	2.5	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Lar_restr_allev	PF14354.6	gi|384435046|ref|YP_005644404.1|	-	0.035	14.5	2.2	2.3	8.6	0.3	2.2	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
zf-piccolo	PF05715.13	gi|384435046|ref|YP_005644404.1|	-	0.051	13.7	1.9	0.92	9.7	0.1	2.2	2	0	0	2	2	2	0	Piccolo	Zn-finger
DZR	PF12773.7	gi|384435046|ref|YP_005644404.1|	-	0.053	13.6	5.1	3.2	7.9	5.1	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
PALB2_WD40	PF16756.5	gi|384435046|ref|YP_005644404.1|	-	0.054	12.4	0.0	0.065	12.1	0.0	1.1	1	0	0	1	1	1	0	Partner	and	localizer	of	BRCA2	WD40	domain
DUF2318	PF10080.9	gi|384435046|ref|YP_005644404.1|	-	0.06	13.5	4.5	0.98	9.6	0.3	2.1	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
UPF0547	PF10571.9	gi|384435046|ref|YP_005644404.1|	-	0.087	12.9	3.3	1.2	9.2	0.0	2.6	3	0	0	3	3	2	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.12	gi|384435046|ref|YP_005644404.1|	-	0.14	12.2	3.6	3.8	7.6	0.0	2.7	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
C1_1	PF00130.22	gi|384435046|ref|YP_005644404.1|	-	0.19	11.7	2.8	2.8	7.9	0.4	2.2	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
IBR	PF01485.21	gi|384435046|ref|YP_005644404.1|	-	0.2	11.9	3.5	2.6	8.3	0.3	2.3	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
Rubredoxin_2	PF18073.1	gi|384435046|ref|YP_005644404.1|	-	0.25	11.1	11.2	1.2	8.9	0.2	3.1	3	0	0	3	3	3	0	Rubredoxin	metal	binding	domain
TFIIS_C	PF01096.18	gi|384435046|ref|YP_005644404.1|	-	0.38	10.6	8.2	16	5.5	2.8	3.1	2	1	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF35_N	PF12172.8	gi|384435046|ref|YP_005644404.1|	-	0.45	10.4	0.2	0.45	10.4	0.2	2.6	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zinc_ribbon_2	PF13240.6	gi|384435046|ref|YP_005644404.1|	-	0.47	10.2	7.2	3.1	7.6	0.2	2.7	3	0	0	3	3	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|384435046|ref|YP_005644404.1|	-	0.59	10.7	5.0	5	7.7	0.4	3.0	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-Mss51	PF13824.6	gi|384435046|ref|YP_005644404.1|	-	0.76	9.9	5.7	2.8	8.1	0.3	2.6	1	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-B_box	PF00643.24	gi|384435046|ref|YP_005644404.1|	-	0.77	10.0	4.3	20	5.5	1.1	2.6	2	1	0	2	2	2	0	B-box	zinc	finger
Nudix_N_2	PF14803.6	gi|384435046|ref|YP_005644404.1|	-	0.79	9.7	6.8	26	4.9	0.1	3.1	2	1	0	2	2	2	0	Nudix	N-terminal
Rubredoxin	PF00301.20	gi|384435046|ref|YP_005644404.1|	-	0.79	9.8	8.5	4.4	7.4	0.6	3.1	3	0	0	3	3	3	0	Rubredoxin
zf-ribbon_3	PF13248.6	gi|384435046|ref|YP_005644404.1|	-	0.87	9.1	7.2	3.5	7.2	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|384435046|ref|YP_005644404.1|	-	1.1	10.0	8.0	13	6.6	4.1	2.7	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Ribosomal_L37e	PF01907.19	gi|384435046|ref|YP_005644404.1|	-	1.2	9.3	7.4	2.5	8.3	0.1	2.7	2	1	0	2	2	2	0	Ribosomal	protein	L37e
ADK_lid	PF05191.14	gi|384435046|ref|YP_005644404.1|	-	1.2	9.1	6.6	9.6	6.3	0.1	3.1	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
zf_UBZ	PF18439.1	gi|384435046|ref|YP_005644404.1|	-	3	7.5	6.1	14	5.4	0.1	3.0	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-UBR	PF02207.20	gi|384435046|ref|YP_005644404.1|	-	3.1	8.0	7.6	6.6	7.0	1.1	2.6	1	1	1	2	2	2	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
Auto_anti-p27	PF06677.12	gi|384435046|ref|YP_005644404.1|	-	4.4	7.6	8.6	3.1	8.0	1.7	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ACC	PF17848.1	gi|384435046|ref|YP_005644404.1|	-	4.9	7.3	9.9	2.4	8.3	0.8	3.0	3	0	0	3	3	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
LigB	PF02900.18	gi|384435047|ref|YP_005644405.1|	-	4.1e-35	121.2	0.0	4.5e-35	121.0	0.0	1.0	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
Memo	PF01875.17	gi|384435047|ref|YP_005644405.1|	-	0.092	11.9	0.0	0.14	11.3	0.0	1.3	1	0	0	1	1	1	0	Memo-like	protein
DUF4011	PF13195.6	gi|384435047|ref|YP_005644405.1|	-	0.17	11.8	0.0	8.6	6.3	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4011)
PIN	PF01850.21	gi|384435048|ref|YP_005644406.1|	-	1.6e-27	96.4	1.6	1.8e-27	96.2	1.6	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_10	PF18478.1	gi|384435048|ref|YP_005644406.1|	-	0.13	12.5	0.0	0.23	11.7	0.0	1.4	1	1	0	1	1	1	0	PIN	like	domain
CcdA	PF07362.12	gi|384435049|ref|YP_005644407.1|	-	0.021	15.3	0.0	0.028	14.9	0.0	1.2	1	0	0	1	1	1	0	Post-segregation	antitoxin	CcdA
POTRA_TamA_1	PF17243.2	gi|384435049|ref|YP_005644407.1|	-	0.023	14.8	0.3	0.036	14.1	0.3	1.6	1	1	0	1	1	1	0	POTRA	domain	TamA	domain	1
ThiP_synth	PF10120.9	gi|384435049|ref|YP_005644407.1|	-	0.042	13.5	0.1	0.045	13.4	0.1	1.1	1	0	0	1	1	1	0	Thiamine-phosphate	synthase
RelB	PF04221.12	gi|384435049|ref|YP_005644407.1|	-	0.052	13.5	0.0	0.07	13.1	0.0	1.2	1	0	0	1	1	1	0	RelB	antitoxin
Imm70	PF15601.6	gi|384435049|ref|YP_005644407.1|	-	0.084	12.4	0.0	0.085	12.4	0.0	1.1	1	0	0	1	1	1	0	Immunity	protein	70
HeH	PF12949.7	gi|384435049|ref|YP_005644407.1|	-	0.086	12.6	0.4	0.24	11.2	0.1	2.1	2	0	0	2	2	2	0	HeH/LEM	domain
DUF2089	PF09862.9	gi|384435049|ref|YP_005644407.1|	-	0.11	12.5	0.4	0.12	12.4	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
RHH_1	PF01402.21	gi|384435049|ref|YP_005644407.1|	-	5.3	7.1	9.1	1.6	8.8	3.2	2.8	3	1	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Resolvase	PF00239.21	gi|384435051|ref|YP_005644409.1|	-	3.5e-22	79.1	0.1	9.8e-22	77.6	0.1	1.6	2	0	0	2	2	2	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.7	gi|384435051|ref|YP_005644409.1|	-	5.4e-16	58.5	0.6	1.1e-15	57.5	0.6	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR	PF00376.23	gi|384435051|ref|YP_005644409.1|	-	9.8e-07	28.4	0.2	2.1e-06	27.4	0.2	1.6	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_1	PF13411.6	gi|384435051|ref|YP_005644409.1|	-	0.00031	20.8	0.1	0.00084	19.4	0.1	1.8	1	1	0	1	1	1	1	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.6	gi|384435051|ref|YP_005644409.1|	-	0.00037	20.2	0.0	0.00091	19.0	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384435051|ref|YP_005644409.1|	-	0.0024	18.0	0.4	0.0062	16.6	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|384435051|ref|YP_005644409.1|	-	0.012	15.6	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
Phage_AlpA	PF05930.12	gi|384435051|ref|YP_005644409.1|	-	0.018	14.8	0.0	0.036	13.9	0.0	1.5	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
YcxB	PF14317.6	gi|384435051|ref|YP_005644409.1|	-	0.022	14.5	0.1	0.045	13.5	0.1	1.6	1	0	0	1	1	1	0	YcxB-like	protein
HTH_psq	PF05225.16	gi|384435051|ref|YP_005644409.1|	-	0.029	14.1	0.2	0.6	9.9	0.0	2.3	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
FtsH_ext	PF06480.15	gi|384435051|ref|YP_005644409.1|	-	0.071	13.5	0.6	2.6	8.4	0.6	2.2	1	1	0	1	1	1	0	FtsH	Extracellular
Helicase_C	PF00271.31	gi|384435051|ref|YP_005644409.1|	-	0.076	13.4	0.1	6.1	7.2	0.0	2.2	1	1	1	2	2	2	0	Helicase	conserved	C-terminal	domain
ANT	PF03374.14	gi|384435051|ref|YP_005644409.1|	-	0.1	12.9	0.1	0.25	11.6	0.1	1.7	1	1	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
OrfB_Zn_ribbon	PF07282.11	gi|384435052|ref|YP_005644410.1|	-	1.3e-18	66.7	0.0	2.4e-18	65.8	0.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384435052|ref|YP_005644410.1|	-	0.0032	17.7	0.1	0.008	16.4	0.1	1.6	1	0	0	1	1	1	1	Probable	transposase
ATPase_2	PF01637.18	gi|384435053|ref|YP_005644411.1|	-	4.1e-22	79.2	14.1	5.6e-22	78.8	6.7	3.0	3	1	0	3	3	3	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|384435053|ref|YP_005644411.1|	-	7.8e-10	38.9	1.7	1.8e-09	37.7	1.7	1.6	1	0	0	1	1	1	1	AAA	domain
DUF234	PF03008.14	gi|384435053|ref|YP_005644411.1|	-	4.6e-08	33.4	3.2	4.6e-08	33.4	3.2	2.3	2	0	0	2	2	2	1	Archaea	bacterial	proteins	of	unknown	function
AAA_22	PF13401.6	gi|384435053|ref|YP_005644411.1|	-	0.00015	22.0	0.0	0.00053	20.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|384435053|ref|YP_005644411.1|	-	0.0035	17.7	0.0	0.0058	17.0	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|384435053|ref|YP_005644411.1|	-	0.057	13.8	0.0	0.11	12.9	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|384435053|ref|YP_005644411.1|	-	0.098	11.8	0.0	0.15	11.2	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF1850	PF08905.11	gi|384435053|ref|YP_005644411.1|	-	0.12	12.7	0.0	0.29	11.5	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1850)
RNA_helicase	PF00910.22	gi|384435053|ref|YP_005644411.1|	-	0.13	12.6	0.3	0.58	10.6	0.3	2.1	1	1	0	1	1	1	0	RNA	helicase
DUF1947	PF09183.10	gi|384435053|ref|YP_005644411.1|	-	5.9	7.3	9.5	4.5	7.6	4.2	3.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1947)
HTH_29	PF13551.6	gi|384435054|ref|YP_005644412.1|	-	1.1e-16	60.6	0.1	1.8e-16	59.9	0.0	1.4	2	0	0	2	2	1	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384435054|ref|YP_005644412.1|	-	3.4e-14	52.2	0.2	6.9e-14	51.2	0.0	1.6	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|384435054|ref|YP_005644412.1|	-	6e-14	51.9	0.1	8.3e-13	48.3	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|384435054|ref|YP_005644412.1|	-	1.7e-09	37.6	0.7	4.5e-08	33.0	0.2	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
Terminase_5	PF06056.12	gi|384435054|ref|YP_005644412.1|	-	8.3e-08	32.0	0.1	1.5e-07	31.2	0.1	1.5	1	1	1	2	2	2	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_17	PF12728.7	gi|384435054|ref|YP_005644412.1|	-	1.5e-07	31.5	1.0	2.4e-07	30.8	0.2	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|384435054|ref|YP_005644412.1|	-	9.4e-07	28.4	0.0	1.6e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR	PF01047.22	gi|384435054|ref|YP_005644412.1|	-	5e-06	26.4	0.1	1.3e-05	25.0	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_38	PF13936.6	gi|384435054|ref|YP_005644412.1|	-	8.3e-06	25.5	0.5	4.3e-05	23.2	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_32	PF13565.6	gi|384435054|ref|YP_005644412.1|	-	1.6e-05	25.4	0.3	0.00011	22.7	0.1	2.0	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_IclR	PF09339.10	gi|384435054|ref|YP_005644412.1|	-	1.7e-05	24.6	0.0	4.7e-05	23.1	0.0	1.8	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Tnp_1	PF01527.20	gi|384435054|ref|YP_005644412.1|	-	1.9e-05	24.8	0.2	7.1e-05	23.0	0.1	1.9	1	1	1	2	2	2	1	Transposase
TrmB	PF01978.19	gi|384435054|ref|YP_005644412.1|	-	2.6e-05	24.0	0.0	4.4e-05	23.3	0.0	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_40	PF14493.6	gi|384435054|ref|YP_005644412.1|	-	6.2e-05	23.4	1.1	9.7e-05	22.8	0.4	1.7	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|384435054|ref|YP_005644412.1|	-	7.3e-05	22.6	0.8	0.0017	18.2	0.0	2.4	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384435054|ref|YP_005644412.1|	-	0.0001	22.4	2.0	0.0001	22.4	2.0	1.4	1	1	0	1	1	1	1	Transposase
TnsD	PF15978.5	gi|384435054|ref|YP_005644412.1|	-	0.00039	19.5	1.4	0.00044	19.3	1.4	1.1	1	0	0	1	1	1	1	Tn7-like	transposition	protein	D
HTH_3	PF01381.22	gi|384435054|ref|YP_005644412.1|	-	0.0016	18.4	0.0	0.0037	17.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_Tnp_1_2	PF13022.6	gi|384435054|ref|YP_005644412.1|	-	0.0017	18.5	0.3	0.0032	17.6	0.1	1.5	1	1	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
HTH_11	PF08279.12	gi|384435054|ref|YP_005644412.1|	-	0.0018	18.2	0.3	0.0051	16.7	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
Sigma54_DBD	PF04552.13	gi|384435054|ref|YP_005644412.1|	-	0.0018	18.0	0.0	0.0025	17.5	0.0	1.3	1	0	0	1	1	1	1	Sigma-54,	DNA	binding	domain
MarR_2	PF12802.7	gi|384435054|ref|YP_005644412.1|	-	0.0031	17.3	0.0	0.0056	16.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Tnp_ISL3	PF13542.6	gi|384435054|ref|YP_005644412.1|	-	0.0037	16.6	0.0	0.0053	16.1	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
LZ_Tnp_IS481	PF13011.6	gi|384435054|ref|YP_005644412.1|	-	0.004	17.6	0.0	0.0053	17.3	0.0	1.3	1	0	0	1	1	1	1	leucine-zipper	of	insertion	element	IS481
Fe_dep_repress	PF01325.19	gi|384435054|ref|YP_005644412.1|	-	0.0042	17.2	0.0	0.008	16.4	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF1492	PF07374.11	gi|384435054|ref|YP_005644412.1|	-	0.0047	17.1	0.5	0.0063	16.7	0.1	1.4	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF1492)
Sigma70_ECF	PF07638.11	gi|384435054|ref|YP_005644412.1|	-	0.005	16.8	0.0	0.0079	16.1	0.0	1.3	1	0	0	1	1	1	1	ECF	sigma	factor
MerR_1	PF13411.6	gi|384435054|ref|YP_005644412.1|	-	0.0079	16.3	0.0	0.02	14.9	0.0	1.7	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
DUF1670	PF07900.11	gi|384435054|ref|YP_005644412.1|	-	0.0099	15.2	0.4	0.015	14.7	0.3	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1670)
HTH_20	PF12840.7	gi|384435054|ref|YP_005644412.1|	-	0.011	15.7	0.0	0.021	14.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
CutA1	PF03091.15	gi|384435054|ref|YP_005644412.1|	-	0.014	15.3	0.5	0.018	14.9	0.4	1.3	1	1	0	1	1	1	0	CutA1	divalent	ion	tolerance	protein
HTH_Crp_2	PF13545.6	gi|384435054|ref|YP_005644412.1|	-	0.022	14.7	0.0	0.054	13.5	0.0	1.6	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|384435054|ref|YP_005644412.1|	-	0.024	14.5	0.0	0.06	13.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_30	PF13556.6	gi|384435054|ref|YP_005644412.1|	-	0.033	14.0	0.0	0.053	13.3	0.0	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_Tnp_4	PF13613.6	gi|384435054|ref|YP_005644412.1|	-	0.037	13.7	0.0	0.057	13.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
Phage_terminase	PF10668.9	gi|384435054|ref|YP_005644412.1|	-	0.037	14.0	0.4	0.057	13.4	0.2	1.6	1	1	0	1	1	1	0	Phage	terminase	small	subunit
DUF4817	PF16087.5	gi|384435054|ref|YP_005644412.1|	-	0.043	13.6	0.7	0.076	12.8	0.1	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain	(DUF4817)
HTH_22	PF13309.6	gi|384435054|ref|YP_005644412.1|	-	0.064	13.3	0.7	0.6	10.2	0.7	2.2	1	1	0	1	1	1	0	HTH	domain
MerR	PF00376.23	gi|384435054|ref|YP_005644412.1|	-	0.077	12.8	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_26	PF13443.6	gi|384435054|ref|YP_005644412.1|	-	0.088	13.3	0.8	0.23	11.9	0.0	2.0	3	0	0	3	3	1	0	Cro/C1-type	HTH	DNA-binding	domain
PDEase_I	PF00233.19	gi|384435054|ref|YP_005644412.1|	-	0.089	12.5	0.1	0.096	12.4	0.1	1.1	1	0	0	1	1	1	0	3'5'-cyclic	nucleotide	phosphodiesterase
PIN	PF01850.21	gi|384435055|ref|YP_005644413.1|	-	4.7e-19	69.1	3.2	5.7e-19	68.8	3.2	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|384435055|ref|YP_005644413.1|	-	0.12	12.9	6.5	0.17	12.4	6.5	1.4	1	1	0	1	1	1	0	PIN	domain
DUF5388	PF17363.2	gi|384435056|ref|YP_005644414.1|	-	0.014	15.6	0.3	0.026	14.7	0.2	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5388)
WIYLD	PF10440.9	gi|384435056|ref|YP_005644414.1|	-	0.048	13.5	0.5	0.11	12.3	0.2	1.7	1	1	1	2	2	2	0	Ubiquitin-binding	WIYLD	domain
Cation_ATPase_N	PF00690.26	gi|384435056|ref|YP_005644414.1|	-	0.052	13.2	0.3	0.19	11.5	0.2	1.9	1	1	1	2	2	2	0	Cation	transporter/ATPase,	N-terminus
ZYG-11_interact	PF05884.12	gi|384435057|ref|YP_005644415.1|	-	0.017	14.5	0.1	0.018	14.5	0.1	1.0	1	0	0	1	1	1	0	Interactor	of	ZYG-11
Dpoe2NT	PF12213.8	gi|384435057|ref|YP_005644415.1|	-	0.022	15.0	0.4	0.025	14.9	0.4	1.1	1	0	0	1	1	1	0	DNA	polymerases	epsilon	N	terminal
PIN	PF01850.21	gi|384435058|ref|YP_005644416.1|	-	4.2e-16	59.5	2.2	4.7e-16	59.4	2.2	1.0	1	0	0	1	1	1	1	PIN	domain
DUF4411	PF14367.6	gi|384435058|ref|YP_005644416.1|	-	0.09	12.7	0.5	0.19	11.6	0.5	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4411)
PaREP1	PF05942.11	gi|384435059|ref|YP_005644417.1|	-	0.017	15.0	1.6	0.023	14.6	0.5	1.6	2	0	0	2	2	2	0	Archaeal	PaREP1/PaREP8	family
RcbX	PF02341.15	gi|384435059|ref|YP_005644417.1|	-	0.021	15.1	0.0	0.025	14.8	0.0	1.1	1	0	0	1	1	1	0	RbcX	protein
CcdA	PF07362.12	gi|384435061|ref|YP_005644419.1|	-	1.4e-05	25.4	1.0	1.5e-05	25.3	1.0	1.1	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
dTDP_sugar_isom	PF00908.17	gi|384435062|ref|YP_005644420.1|	-	2.1e-57	193.5	0.0	2.5e-57	193.2	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
Transposase_20	PF02371.16	gi|384435063|ref|YP_005644421.1|	-	1.3e-24	86.3	0.0	2e-24	85.7	0.0	1.3	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384435063|ref|YP_005644421.1|	-	6e-07	29.5	0.0	1.7e-06	28.0	0.0	1.8	1	0	0	1	1	1	1	Transposase
Transposase_20	PF02371.16	gi|384435064|ref|YP_005644422.1|	-	1e-26	93.1	0.0	2.2e-26	92.0	0.0	1.6	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384435064|ref|YP_005644422.1|	-	5e-14	52.5	0.0	1e-13	51.4	0.0	1.6	1	0	0	1	1	1	1	Transposase
RHH_1	PF01402.21	gi|384435065|ref|YP_005644423.1|	-	0.013	15.4	0.3	0.013	15.4	0.3	1.6	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
RNA_pol_Rpb2_4	PF04566.13	gi|384435065|ref|YP_005644423.1|	-	0.18	12.1	0.0	0.48	10.8	0.0	1.7	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
RVP	PF00077.20	gi|384435066|ref|YP_005644424.1|	-	0.028	14.7	0.0	0.047	14.0	0.0	1.4	1	1	0	1	1	1	0	Retroviral	aspartyl	protease
ELFV_dehydrog	PF00208.21	gi|384435067|ref|YP_005644425.1|	-	7e-67	225.7	3.9	1.2e-66	224.9	3.9	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|384435067|ref|YP_005644425.1|	-	3.9e-50	169.1	0.0	1e-49	167.7	0.0	1.7	2	0	0	2	2	2	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|384435067|ref|YP_005644425.1|	-	0.00035	20.0	0.3	0.0007	19.0	0.3	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.21	gi|384435067|ref|YP_005644425.1|	-	0.069	12.5	0.8	0.13	11.6	0.8	1.4	1	0	0	1	1	1	0	ThiF	family
AdoHcyase_NAD	PF00670.21	gi|384435067|ref|YP_005644425.1|	-	0.071	13.2	1.7	0.15	12.2	1.0	1.7	1	1	1	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
HTH_27	PF13463.6	gi|384435069|ref|YP_005644427.1|	-	7.4e-05	23.2	0.0	0.00016	22.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|384435069|ref|YP_005644427.1|	-	0.00021	21.4	0.7	0.0011	19.1	0.3	2.3	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|384435069|ref|YP_005644427.1|	-	0.0007	19.3	0.1	0.0026	17.5	0.0	1.7	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4423)
MarR_2	PF12802.7	gi|384435069|ref|YP_005644427.1|	-	0.002	18.0	0.0	0.0034	17.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
SMC_Nse1	PF07574.13	gi|384435069|ref|YP_005644427.1|	-	0.0091	15.9	0.0	0.013	15.4	0.0	1.3	1	0	0	1	1	1	1	Nse1	non-SMC	component	of	SMC5-6	complex
HTH_24	PF13412.6	gi|384435069|ref|YP_005644427.1|	-	0.015	14.8	0.0	0.028	14.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|384435069|ref|YP_005644427.1|	-	0.017	15.0	0.4	0.068	13.1	0.0	2.2	2	1	1	3	3	3	0	Helix-turn-helix	domain
AbiEi_4	PF13338.6	gi|384435069|ref|YP_005644427.1|	-	0.024	14.8	0.0	0.052	13.7	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_Crp_2	PF13545.6	gi|384435069|ref|YP_005644427.1|	-	0.027	14.5	0.0	0.068	13.2	0.0	1.7	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Mrr_N	PF14338.6	gi|384435069|ref|YP_005644427.1|	-	0.038	14.1	0.1	0.1	12.8	0.0	1.8	1	1	0	1	1	1	0	Mrr	N-terminal	domain
PCI	PF01399.27	gi|384435069|ref|YP_005644427.1|	-	0.045	14.3	0.0	8.5	7.0	0.0	2.1	1	1	1	2	2	2	0	PCI	domain
SWIB	PF02201.18	gi|384435069|ref|YP_005644427.1|	-	0.054	13.4	0.1	0.11	12.5	0.1	1.6	1	0	0	1	1	1	0	SWIB/MDM2	domain
HTH_5	PF01022.20	gi|384435069|ref|YP_005644427.1|	-	0.055	13.3	0.0	0.11	12.4	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
RPA_C	PF08784.11	gi|384435069|ref|YP_005644427.1|	-	0.15	12.8	0.0	8.4	7.1	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
ABC_tran	PF00005.27	gi|384435071|ref|YP_005644429.1|	-	5.1e-29	101.5	0.0	1.7e-28	99.8	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|384435071|ref|YP_005644429.1|	-	4e-11	43.3	0.5	0.00012	22.1	0.2	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|384435071|ref|YP_005644429.1|	-	9.4e-05	22.1	0.0	0.00017	21.3	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|384435071|ref|YP_005644429.1|	-	0.00015	21.6	0.1	0.00031	20.6	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|384435071|ref|YP_005644429.1|	-	0.0016	18.8	0.8	0.015	15.7	0.6	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4162	PF13732.6	gi|384435071|ref|YP_005644429.1|	-	0.0028	18.3	0.8	0.0086	16.8	0.3	2.1	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_16	PF13191.6	gi|384435071|ref|YP_005644429.1|	-	0.0038	17.6	0.0	0.007	16.8	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|384435071|ref|YP_005644429.1|	-	0.0043	17.6	2.4	0.012	16.1	2.4	1.9	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|384435071|ref|YP_005644429.1|	-	0.0063	16.4	0.1	0.02	14.8	0.0	1.9	2	0	0	2	2	2	1	RsgA	GTPase
AAA_22	PF13401.6	gi|384435071|ref|YP_005644429.1|	-	0.0098	16.2	0.0	0.073	13.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|384435071|ref|YP_005644429.1|	-	0.014	15.4	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SMC_N	PF02463.19	gi|384435071|ref|YP_005644429.1|	-	0.019	14.4	0.3	0.2	11.0	0.1	2.3	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|384435071|ref|YP_005644429.1|	-	0.025	14.3	0.0	0.037	13.8	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|384435071|ref|YP_005644429.1|	-	0.03	14.3	2.2	3.4	7.6	0.1	2.9	3	0	0	3	3	3	0	NTPase
Rad17	PF03215.15	gi|384435071|ref|YP_005644429.1|	-	0.039	13.9	0.0	0.11	12.3	0.0	1.7	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_11	PF13086.6	gi|384435071|ref|YP_005644429.1|	-	0.059	13.2	0.0	0.16	11.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|384435071|ref|YP_005644429.1|	-	0.059	13.3	0.0	0.46	10.4	0.0	2.3	3	0	0	3	3	3	0	NACHT	domain
AAA_5	PF07728.14	gi|384435071|ref|YP_005644429.1|	-	0.06	13.3	0.1	0.34	10.9	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SRP54	PF00448.22	gi|384435071|ref|YP_005644429.1|	-	0.066	12.8	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.19	gi|384435071|ref|YP_005644429.1|	-	0.09	12.4	0.0	0.19	11.3	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.6	gi|384435071|ref|YP_005644429.1|	-	0.1	12.7	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|384435071|ref|YP_005644429.1|	-	0.12	11.8	0.0	0.22	11.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_27	PF13514.6	gi|384435071|ref|YP_005644429.1|	-	0.15	11.7	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ABC2_membrane_2	PF12679.7	gi|384435072|ref|YP_005644430.1|	-	1.5e-14	54.0	29.0	6.7e-14	51.8	29.0	1.8	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|384435072|ref|YP_005644430.1|	-	7.7e-05	22.0	29.5	7.7e-05	22.0	29.5	1.8	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|384435072|ref|YP_005644430.1|	-	0.075	13.0	26.9	0.011	15.7	21.7	2.2	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
SGTA_dimer	PF16546.5	gi|384435072|ref|YP_005644430.1|	-	0.23	11.3	0.9	57	3.6	0.0	3.2	3	0	0	3	3	3	0	Homodimerisation	domain	of	SGTA
ATPase_2	PF01637.18	gi|384435075|ref|YP_005644433.1|	-	2.7e-13	50.4	5.6	4.4e-13	49.7	5.6	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|384435075|ref|YP_005644433.1|	-	1.1e-09	38.4	1.5	0.00026	21.1	0.2	2.7	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|384435075|ref|YP_005644433.1|	-	7.1e-07	29.8	0.0	1.4e-06	28.8	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
TrmB	PF01978.19	gi|384435075|ref|YP_005644433.1|	-	3.8e-05	23.5	0.1	0.00021	21.1	0.0	2.4	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
AAA	PF00004.29	gi|384435075|ref|YP_005644433.1|	-	0.014	15.8	2.6	0.13	12.7	2.6	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4423	PF14394.6	gi|384435075|ref|YP_005644433.1|	-	0.017	14.9	0.0	0.18	11.5	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
AAA_22	PF13401.6	gi|384435075|ref|YP_005644433.1|	-	0.039	14.2	0.2	0.094	13.0	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
E2F_TDP	PF02319.20	gi|384435075|ref|YP_005644433.1|	-	0.12	12.5	5.3	1.9	8.6	0.0	2.8	3	0	0	3	3	3	0	E2F/DP	family	winged-helix	DNA-binding	domain
ThiC_Rad_SAM	PF01964.18	gi|384435076|ref|YP_005644434.1|	-	1.4e-162	541.3	0.0	1.6e-162	541.0	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
IlvN	PF07991.12	gi|384435077|ref|YP_005644435.1|	-	9.1e-61	204.2	0.7	1.3e-60	203.7	0.7	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|384435077|ref|YP_005644435.1|	-	2.3e-30	105.8	0.8	3.1e-30	105.3	0.2	1.5	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
2-Hacid_dh_C	PF02826.19	gi|384435077|ref|YP_005644435.1|	-	7.2e-07	28.7	0.1	1.3e-06	27.9	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|384435077|ref|YP_005644435.1|	-	1e-06	29.0	0.1	1.7e-06	28.2	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|384435077|ref|YP_005644435.1|	-	6.8e-06	26.6	0.1	1.4e-05	25.6	0.1	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|384435077|ref|YP_005644435.1|	-	0.00013	22.1	0.1	0.00024	21.3	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|384435077|ref|YP_005644435.1|	-	0.0046	17.0	0.1	3.9	7.4	0.1	2.5	1	1	1	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
CoA_binding	PF02629.19	gi|384435077|ref|YP_005644435.1|	-	0.0092	16.6	0.2	0.034	14.8	0.2	1.9	1	0	0	1	1	1	1	CoA	binding	domain
PglD_N	PF17836.1	gi|384435077|ref|YP_005644435.1|	-	0.14	12.8	2.2	0.4	11.4	0.4	2.6	3	0	0	3	3	3	0	PglD	N-terminal	domain
Shikimate_DH	PF01488.20	gi|384435077|ref|YP_005644435.1|	-	0.15	12.1	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Transposase_20	PF02371.16	gi|384435078|ref|YP_005644436.1|	-	7.4e-26	90.3	0.0	1.5e-25	89.3	0.0	1.6	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384435078|ref|YP_005644436.1|	-	2.3e-07	30.8	0.0	5.7e-07	29.5	0.0	1.7	1	1	0	1	1	1	1	Transposase
XTBD	PF11952.8	gi|384435078|ref|YP_005644436.1|	-	0.016	15.0	0.2	0.043	13.6	0.1	1.8	2	0	0	2	2	2	0	XRN-Two	Binding	Domain,	XTBD
DUF608	PF04685.13	gi|384435081|ref|YP_005644439.1|	-	2.3e-71	240.9	0.1	9.9e-70	235.5	0.1	2.2	1	1	0	1	1	1	1	Glycosyl-hydrolase	family	116,	catalytic	region
Glyco_hydr_116N	PF12215.8	gi|384435081|ref|YP_005644439.1|	-	1.2e-19	70.9	0.0	2.2e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	beta-glucosidase	2,	glycosyl-hydrolase	family	116	N-term
Bac_rhamnosid6H	PF17389.2	gi|384435081|ref|YP_005644439.1|	-	4.4e-06	26.2	0.0	0.006	15.9	0.0	2.2	1	1	0	2	2	2	2	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
DUF4435	PF14491.6	gi|384435081|ref|YP_005644439.1|	-	0.032	14.1	0.5	0.08	12.8	0.5	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4435)
GDE_C	PF06202.14	gi|384435081|ref|YP_005644439.1|	-	0.056	12.4	0.2	0.57	9.1	0.1	2.3	1	1	1	2	2	2	0	Amylo-alpha-1,6-glucosidase
DUF5127	PF17168.4	gi|384435081|ref|YP_005644439.1|	-	0.1	12.3	0.2	0.52	10.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5127)
Glyco_hydro_12	PF01670.16	gi|384435082|ref|YP_005644440.1|	-	2e-21	77.0	10.1	2.8e-21	76.5	10.1	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	12
Insulin_TMD	PF17870.1	gi|384435082|ref|YP_005644440.1|	-	0.088	12.9	7.4	0.24	11.5	7.4	1.7	1	0	0	1	1	1	0	Insulin	receptor	trans-membrane	segment
Transposase_20	PF02371.16	gi|384435084|ref|YP_005644442.1|	-	1e-27	96.3	0.0	2.3e-27	95.1	0.0	1.6	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384435084|ref|YP_005644442.1|	-	3.2e-13	49.8	0.0	7.4e-13	48.7	0.0	1.6	1	0	0	1	1	1	1	Transposase
NitrOD5	PF11537.8	gi|384435084|ref|YP_005644442.1|	-	0.0037	17.3	0.2	0.012	15.8	0.0	1.9	2	0	0	2	2	2	1	Nitrosopumilus	output	domain	5
Peptidase_M20	PF01546.28	gi|384435085|ref|YP_005644443.1|	-	1.7e-32	112.8	0.1	2.3e-32	112.4	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|384435085|ref|YP_005644443.1|	-	1.1e-13	51.1	0.0	6.7e-13	48.5	0.0	2.1	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
MOR2-PAG1_C	PF14225.6	gi|384435085|ref|YP_005644443.1|	-	0.21	11.4	0.0	0.35	10.7	0.0	1.3	1	0	0	1	1	1	0	Cell	morphogenesis	C-terminal
Phytochelatin_C	PF09328.10	gi|384435085|ref|YP_005644443.1|	-	1.3	8.2	2.9	0.56	9.5	0.4	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1984)
HEAT	PF02985.22	gi|384435086|ref|YP_005644444.1|	-	0.007	16.5	0.1	5.3	7.6	0.0	3.6	3	0	0	3	3	3	1	HEAT	repeat
HEAT_2	PF13646.6	gi|384435086|ref|YP_005644444.1|	-	0.054	13.9	0.0	2.4	8.6	0.0	2.8	2	1	1	3	3	3	0	HEAT	repeats
SMP_LBD	PF17047.5	gi|384435086|ref|YP_005644444.1|	-	0.059	12.8	0.2	1.4	8.3	0.0	2.1	1	1	1	2	2	2	0	Synaptotagmin-like	mitochondrial-lipid-binding	domain
ERAP1_C	PF11838.8	gi|384435086|ref|YP_005644444.1|	-	0.082	12.4	0.0	0.093	12.3	0.0	1.2	1	0	0	1	1	1	0	ERAP1-like	C-terminal	domain
Mitovir_RNA_pol	PF05919.11	gi|384435086|ref|YP_005644444.1|	-	0.11	11.6	0.0	0.13	11.4	0.0	1.0	1	0	0	1	1	1	0	Mitovirus	RNA-dependent	RNA	polymerase
Glycos_transf_2	PF00535.26	gi|384435087|ref|YP_005644445.1|	-	9.8e-19	67.8	0.0	1.6e-18	67.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|384435087|ref|YP_005644445.1|	-	1.4e-07	31.6	0.0	2.1e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
CofC	PF01983.16	gi|384435087|ref|YP_005644445.1|	-	0.0037	16.5	0.1	0.0062	15.7	0.1	1.3	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
Glyco_tranf_2_2	PF10111.9	gi|384435087|ref|YP_005644445.1|	-	0.013	15.0	0.0	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF3377	PF11857.8	gi|384435087|ref|YP_005644445.1|	-	0.045	13.7	0.0	0.14	12.1	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3377)
Flp_Fap	PF04964.14	gi|384435089|ref|YP_005644447.1|	-	0.014	15.2	2.0	0.033	14.0	2.0	1.6	1	0	0	1	1	1	0	Flp/Fap	pilin	component
MFS_1	PF07690.16	gi|384435090|ref|YP_005644448.1|	-	3e-28	98.8	47.7	4.8e-28	98.1	47.7	1.3	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Band_7	PF01145.25	gi|384435092|ref|YP_005644450.1|	-	3.4e-22	79.3	1.0	4.6e-22	78.9	1.0	1.3	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|384435092|ref|YP_005644450.1|	-	2.9e-12	46.8	0.1	7.8e-12	45.4	0.1	1.7	1	1	0	1	1	1	1	SPFH	domain-Band	7	family
TssN	PF17555.2	gi|384435093|ref|YP_005644451.1|	-	9.3	5.5	11.1	2.5	7.4	5.7	1.9	2	0	0	2	2	2	0	Type	VI	secretion	system,	TssN
LigB	PF02900.18	gi|384435094|ref|YP_005644452.1|	-	9.2e-13	47.9	0.0	1.1e-12	47.6	0.0	1.1	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
DUF4143	PF13635.6	gi|384435095|ref|YP_005644453.1|	-	6.6e-07	29.5	0.1	1.1e-06	28.8	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
Transposase_20	PF02371.16	gi|384435096|ref|YP_005644454.1|	-	1e-27	96.3	0.0	2.3e-27	95.1	0.0	1.6	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384435096|ref|YP_005644454.1|	-	6.2e-14	52.2	0.0	1.4e-13	51.0	0.0	1.6	1	0	0	1	1	1	1	Transposase
OrfB_Zn_ribbon	PF07282.11	gi|384435097|ref|YP_005644455.1|	-	5.4e-19	67.9	0.0	9.6e-19	67.1	0.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
PIN	PF01850.21	gi|384435098|ref|YP_005644456.1|	-	5.4e-21	75.3	1.4	6.1e-21	75.2	1.4	1.0	1	0	0	1	1	1	1	PIN	domain
MazE_antitoxin	PF04014.18	gi|384435099|ref|YP_005644457.1|	-	5.9e-11	42.0	2.6	1e-10	41.3	2.6	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF2375	PF09558.10	gi|384435099|ref|YP_005644457.1|	-	0.0017	18.3	0.5	0.003	17.5	0.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2375)
DUF3006	PF11213.8	gi|384435099|ref|YP_005644457.1|	-	0.02	15.1	0.1	0.028	14.6	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3006)
CNV-Replicase_N	PF16688.5	gi|384435099|ref|YP_005644457.1|	-	0.071	13.5	0.1	0.11	12.9	0.1	1.3	1	1	0	1	1	1	0	Replicase	polyprotein	N-term	from	Coronavirus	nsp1
MazE_antitoxin	PF04014.18	gi|384435100|ref|YP_005644458.1|	-	7.5e-14	51.3	2.4	9.5e-14	50.9	1.9	1.4	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
AbrB-like	PF14250.6	gi|384435100|ref|YP_005644458.1|	-	0.022	14.9	0.2	0.068	13.3	0.1	1.7	2	0	0	2	2	2	0	AbrB-like	transcriptional	regulator
PrlF_antitoxin	PF15937.5	gi|384435100|ref|YP_005644458.1|	-	0.042	14.3	0.1	0.053	14.0	0.1	1.3	1	1	0	1	1	1	0	prlF	antitoxin	for	toxin	YhaV_toxin
Thump_like	PF18096.1	gi|384435100|ref|YP_005644458.1|	-	0.056	13.4	0.6	0.084	12.8	0.1	1.6	1	1	0	1	1	1	0	THUMP	domain-like
CDC48_N	PF02359.18	gi|384435100|ref|YP_005644458.1|	-	0.068	13.4	0.1	0.083	13.1	0.1	1.3	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
PIN	PF01850.21	gi|384435101|ref|YP_005644459.1|	-	8.3e-19	68.3	0.1	9.2e-19	68.1	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
CcdA	PF07362.12	gi|384435102|ref|YP_005644460.1|	-	2e-05	24.9	1.3	2e-05	24.9	1.3	1.5	1	1	1	2	2	2	1	Post-segregation	antitoxin	CcdA
PSK_trans_fac	PF07704.11	gi|384435102|ref|YP_005644460.1|	-	0.00033	21.4	4.1	0.00037	21.2	4.1	1.1	1	0	0	1	1	1	1	Rv0623-like	transcription	factor
DUF816	PF05674.12	gi|384435102|ref|YP_005644460.1|	-	0.00069	19.6	0.8	0.00078	19.4	0.8	1.0	1	0	0	1	1	1	1	Baculovirus	protein	of	unknown	function	(DUF816)
Ran-binding	PF05508.11	gi|384435102|ref|YP_005644460.1|	-	0.0048	15.9	3.3	0.0058	15.7	3.3	1.0	1	0	0	1	1	1	1	RanGTP-binding	protein
YqaH	PF17448.2	gi|384435102|ref|YP_005644460.1|	-	0.031	14.6	0.7	0.037	14.3	0.7	1.1	1	0	0	1	1	1	0	Uncharacterized	YqaH-like
Phage_integrase	PF00589.22	gi|384435102|ref|YP_005644460.1|	-	0.054	13.3	0.9	0.061	13.1	0.9	1.0	1	0	0	1	1	1	0	Phage	integrase	family
DUF4145	PF13643.6	gi|384435102|ref|YP_005644460.1|	-	0.064	13.4	0.9	0.091	12.9	0.9	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4145)
YpjP	PF14005.6	gi|384435102|ref|YP_005644460.1|	-	0.12	12.4	0.9	0.13	12.3	0.9	1.1	1	0	0	1	1	1	0	YpjP-like	protein
YtxH	PF12732.7	gi|384435102|ref|YP_005644460.1|	-	0.16	12.5	4.3	0.2	12.2	4.3	1.1	1	0	0	1	1	1	0	YtxH-like	protein
DUF3347	PF11827.8	gi|384435102|ref|YP_005644460.1|	-	0.18	12.0	1.1	0.2	11.8	1.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3347)
CAP18_C	PF12153.8	gi|384435102|ref|YP_005644460.1|	-	0.28	11.1	3.4	0.84	9.6	1.6	2.2	1	1	1	2	2	2	0	LPS	binding	domain	of	CAP18	(C	terminal)
YojJ	PF10372.9	gi|384435102|ref|YP_005644460.1|	-	0.28	11.3	3.1	0.22	11.6	1.4	1.6	1	1	1	2	2	2	0	Bacterial	membrane-spanning	protein	N-terminus
DUF4449	PF14613.6	gi|384435102|ref|YP_005644460.1|	-	0.34	11.0	4.4	0.2	11.7	2.2	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4449)
Histone_HNS	PF00816.21	gi|384435102|ref|YP_005644460.1|	-	0.95	10.3	4.7	6.9	7.6	4.7	2.0	1	1	0	1	1	1	0	H-NS	histone	family
DUF4646	PF15496.6	gi|384435102|ref|YP_005644460.1|	-	1.1	9.9	3.0	17	6.0	0.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4646)
PIN	PF01850.21	gi|384435103|ref|YP_005644461.1|	-	2.3e-08	34.6	0.2	3.2e-08	34.1	0.2	1.2	1	0	0	1	1	1	1	PIN	domain
RNase_Zc3h12a	PF11977.8	gi|384435103|ref|YP_005644461.1|	-	0.054	13.3	0.3	0.073	12.9	0.3	1.2	1	1	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
MurJ	PF03023.14	gi|384435103|ref|YP_005644461.1|	-	0.14	10.8	0.0	0.16	10.5	0.0	1.1	1	0	0	1	1	1	0	Lipid	II	flippase	MurJ
Transposase_20	PF02371.16	gi|384435104|ref|YP_005644462.1|	-	1e-27	96.3	0.0	2.3e-27	95.1	0.0	1.6	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DEDD_Tnp_IS110	PF01548.17	gi|384435104|ref|YP_005644462.1|	-	6.2e-14	52.2	0.0	1.4e-13	51.0	0.0	1.6	1	0	0	1	1	1	1	Transposase
AMP-binding	PF00501.28	gi|384435105|ref|YP_005644463.1|	-	4.5e-40	137.5	0.0	5.3e-40	137.3	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
ACAS_N	PF16177.5	gi|384435105|ref|YP_005644463.1|	-	1.4e-17	63.3	0.4	3e-17	62.3	0.4	1.6	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
Acyl-CoA_dh_1	PF00441.24	gi|384435106|ref|YP_005644464.1|	-	4.5e-43	147.0	0.1	7e-43	146.4	0.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|384435106|ref|YP_005644464.1|	-	1.1e-22	80.0	0.1	1.8e-22	79.3	0.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|384435106|ref|YP_005644464.1|	-	5e-16	59.4	0.0	1.2e-15	58.2	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|384435106|ref|YP_005644464.1|	-	4e-15	56.3	0.0	3e-14	53.5	0.0	2.2	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Thiolase_C	PF02803.18	gi|384435107|ref|YP_005644465.1|	-	0.011	15.4	0.0	0.025	14.2	0.0	1.7	2	0	0	2	2	2	0	Thiolase,	C-terminal	domain
TrkA_N	PF02254.18	gi|384435107|ref|YP_005644465.1|	-	0.02	15.1	0.1	0.047	14.0	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Thiolase_N	PF00108.23	gi|384435108|ref|YP_005644466.1|	-	1.4e-11	44.2	0.0	3.2e-10	39.8	0.0	2.4	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|384435108|ref|YP_005644466.1|	-	0.00058	19.5	0.0	1.4	8.6	0.0	2.5	2	0	0	2	2	2	2	Thiolase,	C-terminal	domain
Gpr1_Fun34_YaaH	PF01184.19	gi|384435108|ref|YP_005644466.1|	-	0.11	12.1	0.1	0.19	11.3	0.1	1.3	1	0	0	1	1	1	0	GPR1/FUN34/yaaH	family
Peptidase_M22	PF00814.25	gi|384435108|ref|YP_005644466.1|	-	0.13	12.0	0.0	0.28	10.8	0.0	1.6	1	0	0	1	1	1	0	Glycoprotease	family
DUF35_N	PF12172.8	gi|384435109|ref|YP_005644467.1|	-	2.1e-09	37.0	0.3	3.8e-09	36.3	0.3	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|384435109|ref|YP_005644467.1|	-	0.00017	21.5	0.1	0.00031	20.7	0.1	1.4	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
Cytochrom_c3_2	PF14537.6	gi|384435109|ref|YP_005644467.1|	-	0.061	13.8	0.1	0.1	13.1	0.1	1.4	1	0	0	1	1	1	0	Cytochrome	c3
DUF35_N	PF12172.8	gi|384435110|ref|YP_005644468.1|	-	9.2e-11	41.4	0.0	1.6e-10	40.6	0.0	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|384435110|ref|YP_005644468.1|	-	4.5e-08	33.0	0.0	7.1e-08	32.3	0.0	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DZR	PF12773.7	gi|384435110|ref|YP_005644468.1|	-	0.042	13.9	0.1	0.061	13.4	0.1	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2785	PF10978.8	gi|384435111|ref|YP_005644469.1|	-	0.056	13.2	0.1	0.1	12.4	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2785)
AAA_lid_4	PF17864.1	gi|384435111|ref|YP_005644469.1|	-	0.062	13.1	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	RuvB	AAA	lid	domain
DUF3194	PF11419.8	gi|384435111|ref|YP_005644469.1|	-	3.5	8.0	9.4	1.1	9.7	0.1	3.7	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF3194)
TPP_enzyme_C	PF02775.21	gi|384435112|ref|YP_005644470.1|	-	3.2e-22	79.0	0.0	7.6e-22	77.7	0.0	1.7	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.19	gi|384435112|ref|YP_005644470.1|	-	2.7e-13	50.2	0.0	1.4e-12	47.9	0.0	1.9	2	0	0	2	2	2	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.27	gi|384435112|ref|YP_005644470.1|	-	7.2e-10	38.3	14.5	4.9e-07	29.3	5.3	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
TPP_enzyme_N	PF02776.18	gi|384435112|ref|YP_005644470.1|	-	1.2e-08	34.7	0.2	2e-05	24.3	0.0	2.3	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_7	PF12838.7	gi|384435112|ref|YP_005644470.1|	-	2.3e-07	31.3	5.6	4.5e-05	23.9	0.7	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Transketolase_C	PF02780.20	gi|384435112|ref|YP_005644470.1|	-	6.5e-07	29.3	0.1	9.3e-06	25.5	0.0	2.7	3	0	0	3	3	3	1	Transketolase,	C-terminal	domain
Fer4_9	PF13187.6	gi|384435112|ref|YP_005644470.1|	-	3.2e-06	27.2	10.1	6.8e-06	26.2	10.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|384435112|ref|YP_005644470.1|	-	3.2e-06	27.0	20.8	2e-05	24.4	4.5	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|384435112|ref|YP_005644470.1|	-	4e-06	26.8	22.0	4e-05	23.6	11.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384435112|ref|YP_005644470.1|	-	1.1e-05	25.2	17.9	0.0019	18.2	2.1	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|384435112|ref|YP_005644470.1|	-	4.7e-05	23.6	11.1	0.002	18.5	2.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|384435112|ref|YP_005644470.1|	-	5.4e-05	23.3	11.3	0.00013	22.0	10.8	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384435112|ref|YP_005644470.1|	-	0.00071	20.5	8.9	0.0016	19.4	0.8	2.8	3	0	0	3	3	2	1	4Fe-4S	double	cluster	binding	domain
DXP_synthase_N	PF13292.6	gi|384435112|ref|YP_005644470.1|	-	0.0065	15.7	0.3	0.064	12.4	0.4	2.0	1	1	1	2	2	2	1	1-deoxy-D-xylulose-5-phosphate	synthase
Fer4_13	PF13370.6	gi|384435112|ref|YP_005644470.1|	-	0.0091	16.5	11.3	0.13	12.8	2.5	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|384435112|ref|YP_005644470.1|	-	0.012	16.3	9.2	0.16	12.8	1.4	2.9	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|384435112|ref|YP_005644470.1|	-	0.014	16.2	5.5	0.014	16.2	5.5	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384435112|ref|YP_005644470.1|	-	0.018	15.6	9.0	0.12	13.0	0.9	2.5	1	1	1	3	3	3	0	4Fe-4S	dicluster	domain
PFOR_II	PF17147.4	gi|384435112|ref|YP_005644470.1|	-	0.022	15.0	0.0	0.049	13.9	0.0	1.6	1	0	0	1	1	1	0	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Fer4_8	PF13183.6	gi|384435112|ref|YP_005644470.1|	-	0.024	15.1	10.5	0.34	11.4	2.4	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|384435112|ref|YP_005644470.1|	-	0.13	13.1	5.1	0.25	12.2	0.5	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.18	gi|384435113|ref|YP_005644471.1|	-	9.3e-32	110.5	1.1	1.2e-31	110.2	1.1	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
AMP-binding	PF00501.28	gi|384435114|ref|YP_005644472.1|	-	3e-73	246.8	0.0	4e-73	246.4	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|384435114|ref|YP_005644472.1|	-	4.1e-19	69.3	0.1	8.1e-19	68.4	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|384435114|ref|YP_005644472.1|	-	3.7e-08	33.1	0.8	9.1e-08	31.9	0.2	2.0	2	0	0	2	2	2	1	Acetyl-coenzyme	A	synthetase	N-terminus
PATR	PF12951.7	gi|384435114|ref|YP_005644472.1|	-	0.16	12.1	0.2	0.35	11.0	0.2	1.5	1	0	0	1	1	1	0	Passenger-associated-transport-repeat
AhpC-TSA	PF00578.21	gi|384435115|ref|YP_005644473.1|	-	4.2e-36	123.6	0.0	5.2e-36	123.3	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|384435115|ref|YP_005644473.1|	-	8e-24	84.0	0.0	9e-24	83.9	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|384435115|ref|YP_005644473.1|	-	0.03	14.5	0.0	0.041	14.0	0.0	1.2	1	0	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|384435115|ref|YP_005644473.1|	-	0.088	12.3	0.0	0.099	12.2	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
Lactamase_B	PF00753.27	gi|384435116|ref|YP_005644474.1|	-	3e-13	50.2	1.0	5.4e-12	46.1	1.0	2.6	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|384435116|ref|YP_005644474.1|	-	0.00061	19.4	0.3	0.0014	18.2	0.3	1.6	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
TrmB	PF01978.19	gi|384435117|ref|YP_005644475.1|	-	1.5e-24	85.7	0.8	2.7e-24	84.8	0.8	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|384435117|ref|YP_005644475.1|	-	0.0011	19.2	0.0	0.003	17.9	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
Sec23_helical	PF04815.15	gi|384435117|ref|YP_005644475.1|	-	0.0033	17.2	0.0	0.0068	16.2	0.0	1.5	1	0	0	1	1	1	1	Sec23/Sec24	helical	domain
HTH_24	PF13412.6	gi|384435117|ref|YP_005644475.1|	-	0.0095	15.5	0.5	0.021	14.4	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.9	gi|384435117|ref|YP_005644475.1|	-	0.043	13.9	0.3	0.11	12.6	0.0	1.8	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_9	PF08221.11	gi|384435117|ref|YP_005644475.1|	-	0.073	13.2	0.0	0.21	11.7	0.0	1.7	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_47	PF16221.5	gi|384435117|ref|YP_005644475.1|	-	0.16	11.6	0.0	0.31	10.6	0.0	1.5	1	0	0	1	1	1	0	winged	helix-turn-helix
DnaGprimase_HBD	PF16730.5	gi|384435117|ref|YP_005644475.1|	-	0.66	10.1	4.8	2.2	8.4	0.8	2.8	2	1	1	3	3	3	0	DnaG-primase	C-terminal,	helicase-binding	domain
MFS_1	PF07690.16	gi|384435118|ref|YP_005644476.1|	-	9.6e-32	110.3	37.9	3.9e-18	65.5	11.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|384435118|ref|YP_005644476.1|	-	0.001	17.6	5.2	0.15	10.5	0.3	2.3	2	0	0	2	2	2	2	Transmembrane	secretion	effector
DDE_Tnp_2	PF04693.12	gi|384435119|ref|YP_005644477.1|	-	6.1e-180	597.6	1.5	7e-180	597.4	1.5	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384435119|ref|YP_005644477.1|	-	8.5e-06	25.3	0.0	1.6e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384435119|ref|YP_005644477.1|	-	0.0015	18.2	0.0	0.0024	17.6	0.0	1.4	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384435119|ref|YP_005644477.1|	-	0.13	12.0	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
Ferritin	PF00210.24	gi|384435120|ref|YP_005644478.1|	-	1.5e-23	83.3	0.2	1.9e-23	82.9	0.2	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|384435120|ref|YP_005644478.1|	-	0.0028	18.0	0.2	0.0044	17.4	0.2	1.3	1	1	0	1	1	1	1	Rubrerythrin
DUF4439	PF14530.6	gi|384435120|ref|YP_005644478.1|	-	0.034	14.8	0.1	1.9	9.2	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4439)
COQ7	PF03232.13	gi|384435120|ref|YP_005644478.1|	-	0.075	12.8	0.1	0.25	11.1	0.0	1.7	2	0	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
Rieske	PF00355.26	gi|384435121|ref|YP_005644479.1|	-	1.7e-14	53.5	0.0	1.9e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|384435121|ref|YP_005644479.1|	-	2.4e-07	30.6	0.0	3.6e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DUF4318	PF14201.6	gi|384435121|ref|YP_005644479.1|	-	0.11	13.0	0.1	2.4	8.7	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4318)
Cas_NE0113	PF09623.10	gi|384435122|ref|YP_005644480.1|	-	2.3e-08	34.0	0.0	3e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	CRISPR-associated	protein	NE0113	(Cas_NE0113)
Cas_DxTHG	PF09455.10	gi|384435122|ref|YP_005644480.1|	-	0.00016	21.4	0.4	0.00027	20.6	0.4	1.4	1	1	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
Cas_Cas02710	PF09670.10	gi|384435122|ref|YP_005644480.1|	-	0.00054	18.9	0.1	0.0012	17.7	0.0	1.5	1	1	1	2	2	2	1	CRISPR-associated	protein	(Cas_Cas02710)
DUF1479	PF07350.12	gi|384435122|ref|YP_005644480.1|	-	0.036	12.8	0.1	0.045	12.5	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1479)
DUF2103	PF09876.9	gi|384435122|ref|YP_005644480.1|	-	0.037	14.0	0.3	1.9	8.5	0.0	2.2	2	0	0	2	2	2	0	Predicted	metal-binding	protein	(DUF2103)
DUF2371	PF10177.9	gi|384435123|ref|YP_005644481.1|	-	0.014	15.5	5.2	0.38	10.9	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
DUF3185	PF11381.8	gi|384435123|ref|YP_005644481.1|	-	0.015	15.3	11.6	0.044	13.8	1.5	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Phage_holin_3_6	PF07332.11	gi|384435123|ref|YP_005644481.1|	-	0.039	14.0	11.6	0.19	11.7	3.0	2.2	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Myelin_PLP	PF01275.19	gi|384435123|ref|YP_005644481.1|	-	0.1	12.5	2.9	0.57	10.0	0.2	2.1	2	0	0	2	2	2	0	Myelin	proteolipid	protein	(PLP	or	lipophilin)
DUF4212	PF13937.6	gi|384435123|ref|YP_005644481.1|	-	0.61	10.5	5.6	0.2	12.0	1.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4212)
DUF2207	PF09972.9	gi|384435123|ref|YP_005644481.1|	-	0.62	8.8	2.5	0.86	8.3	2.5	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3784	PF12650.7	gi|384435123|ref|YP_005644481.1|	-	0.9	9.8	8.0	2.2	8.5	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
Saf_2TM	PF18303.1	gi|384435123|ref|YP_005644481.1|	-	2.1	7.9	8.6	3.3	7.3	0.4	2.2	2	0	0	2	2	2	0	SAVED-fused	2TM	effector	domain
DUF4418	PF14387.6	gi|384435123|ref|YP_005644481.1|	-	2.6	8.3	6.5	3.3	7.9	1.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4418)
DUF202	PF02656.15	gi|384435123|ref|YP_005644481.1|	-	3.1	8.3	10.0	0.7	10.4	0.6	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Neurensin	PF14927.6	gi|384435123|ref|YP_005644481.1|	-	7.3	6.3	14.1	3.4	7.4	2.8	2.2	1	1	0	2	2	2	0	Neurensin
Metallophos_3	PF14582.6	gi|384435124|ref|YP_005644482.1|	-	1.2e-08	34.6	0.2	2.8e-07	30.1	0.2	2.6	1	1	0	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos_2	PF12850.7	gi|384435124|ref|YP_005644482.1|	-	4.5e-06	27.0	0.0	0.0039	17.4	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|384435124|ref|YP_005644482.1|	-	6e-05	23.6	0.0	0.03	14.8	0.0	2.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
DLH	PF01738.18	gi|384435125|ref|YP_005644483.1|	-	1.5e-81	273.1	0.0	2.4e-81	272.4	0.0	1.3	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|384435125|ref|YP_005644483.1|	-	3e-08	33.2	0.0	0.00072	18.9	0.0	2.7	3	0	0	3	3	3	2	Serine	aminopeptidase,	S33
Abhydrolase_2	PF02230.16	gi|384435125|ref|YP_005644483.1|	-	0.0001	22.2	0.0	0.00016	21.6	0.0	1.3	1	0	0	1	1	1	1	Phospholipase/Carboxylesterase
Abhydrolase_5	PF12695.7	gi|384435125|ref|YP_005644483.1|	-	0.0096	15.7	0.1	0.034	13.9	0.0	1.8	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|384435125|ref|YP_005644483.1|	-	0.01	15.5	0.1	0.095	12.3	0.1	2.0	1	1	0	2	2	2	0	alpha/beta	hydrolase	fold
BAAT_C	PF08840.11	gi|384435125|ref|YP_005644483.1|	-	0.069	13.1	0.2	19	5.1	0.1	2.8	2	0	0	2	2	2	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Peptidase_S9	PF00326.21	gi|384435125|ref|YP_005644483.1|	-	0.13	11.8	0.0	11	5.5	0.0	2.3	2	0	0	2	2	2	0	Prolyl	oligopeptidase	family
Abhydrolase_3	PF07859.13	gi|384435125|ref|YP_005644483.1|	-	0.13	12.1	0.0	2.7	7.8	0.0	2.3	1	1	0	2	2	2	0	alpha/beta	hydrolase	fold
Pro-kuma_activ	PF09286.11	gi|384435126|ref|YP_005644484.1|	-	3.6e-30	105.1	0.0	6.2e-30	104.4	0.0	1.4	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.22	gi|384435126|ref|YP_005644484.1|	-	0.11	11.7	0.0	0.27	10.5	0.0	1.5	1	1	0	1	1	1	0	Subtilase	family
TENA_THI-4	PF03070.16	gi|384435127|ref|YP_005644485.1|	-	5.2e-47	160.4	0.0	5.8e-47	160.2	0.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Ald_Xan_dh_C2	PF02738.18	gi|384435128|ref|YP_005644486.1|	-	1.3e-94	317.6	0.0	2e-94	317.1	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384435128|ref|YP_005644486.1|	-	2.3e-26	92.3	0.0	4.8e-26	91.3	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Alpha-amylase	PF00128.24	gi|384435130|ref|YP_005644488.1|	-	4.6e-34	118.5	2.7	3.5e-22	79.4	0.1	3.2	2	1	0	2	2	2	2	Alpha	amylase,	catalytic	domain
Alpha-amyl_C	PF09071.10	gi|384435130|ref|YP_005644488.1|	-	4.8e-33	112.8	0.4	1.6e-32	111.1	0.4	2.0	1	0	0	1	1	1	1	Alpha-amylase,	C	terminal
CBM_48	PF02922.18	gi|384435130|ref|YP_005644488.1|	-	1.1e-06	28.9	0.1	5.4e-06	26.7	0.0	2.2	2	0	0	2	2	2	1	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
GHL5	PF14872.6	gi|384435130|ref|YP_005644488.1|	-	0.078	11.0	0.1	1.5	6.8	0.0	2.1	1	1	1	2	2	2	0	Hypothetical	glycoside	hydrolase	5
CBM_48	PF02922.18	gi|384435131|ref|YP_005644489.1|	-	4.5e-20	71.8	0.0	2.2e-19	69.6	0.0	2.2	2	0	0	2	2	2	1	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
Alpha-amylase	PF00128.24	gi|384435131|ref|YP_005644489.1|	-	1.4e-17	64.3	0.7	3.5e-10	40.0	0.1	3.2	2	1	1	3	3	3	3	Alpha	amylase,	catalytic	domain
Alpha-amylase_C	PF02806.18	gi|384435131|ref|YP_005644489.1|	-	9.6e-05	22.8	0.0	0.00025	21.4	0.0	1.8	1	0	0	1	1	1	1	Alpha	amylase,	C-terminal	all-beta	domain
GlgX_C	PF18390.1	gi|384435131|ref|YP_005644489.1|	-	0.015	15.1	0.0	0.044	13.6	0.0	1.7	1	0	0	1	1	1	0	Glycogen	debranching	enzyme	C-terminal	domain
Pur_ac_phosph_N	PF16656.5	gi|384435131|ref|YP_005644489.1|	-	0.025	15.2	0.0	0.084	13.5	0.0	1.9	1	0	0	1	1	1	0	Purple	acid	Phosphatase,	N-terminal	domain
Alpha-amylase	PF00128.24	gi|384435132|ref|YP_005644490.1|	-	4.5e-23	82.3	9.7	4.5e-20	72.5	1.7	3.5	3	1	1	4	4	4	3	Alpha	amylase,	catalytic	domain
DUF4270	PF14092.6	gi|384435133|ref|YP_005644491.1|	-	0.04	13.0	0.3	0.041	13.0	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4270)
VAPB_antitox	PF02697.14	gi|384435133|ref|YP_005644491.1|	-	2	9.3	10.3	9	7.2	10.3	1.9	1	1	0	1	1	1	0	Putative	antitoxin
DUF4535	PF15054.6	gi|384435133|ref|YP_005644491.1|	-	2.1	8.1	6.5	8.6	6.2	1.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4535)
PIN	PF01850.21	gi|384435134|ref|YP_005644492.1|	-	1.4e-10	41.7	0.4	2e-10	41.2	0.4	1.2	1	1	0	1	1	1	1	PIN	domain
ArsA_ATPase	PF02374.15	gi|384435134|ref|YP_005644492.1|	-	0.031	13.5	0.0	0.038	13.2	0.0	1.1	1	0	0	1	1	1	0	Anion-transporting	ATPase
Fic_N	PF13784.6	gi|384435134|ref|YP_005644492.1|	-	0.051	13.6	0.0	0.082	13.0	0.0	1.3	1	0	0	1	1	1	0	Fic/DOC	family	N-terminal
DUF5615	PF18480.1	gi|384435134|ref|YP_005644492.1|	-	0.056	13.2	0.0	0.096	12.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
DUF3802	PF12290.8	gi|384435134|ref|YP_005644492.1|	-	0.076	13.5	0.0	0.094	13.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3802)
Hydrolase_6	PF13344.6	gi|384435134|ref|YP_005644492.1|	-	0.15	12.2	0.0	0.22	11.6	0.0	1.4	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Tricorn_PDZ	PF14685.6	gi|384435135|ref|YP_005644493.1|	-	3.4e-26	91.0	0.1	6.8e-26	90.1	0.1	1.5	1	0	0	1	1	1	1	Tricorn	protease	PDZ	domain
Peptidase_S41	PF03572.18	gi|384435135|ref|YP_005644493.1|	-	5.6e-23	81.3	0.0	1.2e-22	80.2	0.0	1.6	1	0	0	1	1	1	1	Peptidase	family	S41
Tricorn_C1	PF14684.6	gi|384435135|ref|YP_005644493.1|	-	2.5e-22	78.7	2.5	4.9e-22	77.8	2.5	1.5	1	0	0	1	1	1	1	Tricorn	protease	C1	domain
PD40	PF07676.12	gi|384435135|ref|YP_005644493.1|	-	6.9e-13	48.2	0.2	9.6e-06	25.4	0.1	5.5	5	0	0	5	5	5	2	WD40-like	Beta	Propeller	Repeat
PB1	PF00564.24	gi|384435135|ref|YP_005644493.1|	-	0.051	13.5	0.3	0.29	11.1	0.1	2.2	2	0	0	2	2	2	0	PB1	domain
SdiA-regulated	PF06977.11	gi|384435135|ref|YP_005644493.1|	-	0.15	11.3	0.2	6.5	5.9	0.0	2.3	2	0	0	2	2	2	0	SdiA-regulated
DUF4652	PF15525.6	gi|384435135|ref|YP_005644493.1|	-	2.6	7.8	10.6	1.2	8.8	0.2	3.9	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4652)
RibD_C	PF01872.17	gi|384435136|ref|YP_005644494.1|	-	1.7e-57	194.5	0.0	1.9e-57	194.3	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
DUF772	PF05598.11	gi|384435139|ref|YP_005644497.1|	-	0.00066	19.7	0.0	0.0016	18.4	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.21	gi|384435139|ref|YP_005644497.1|	-	0.041	13.5	0.0	0.061	12.9	0.0	1.3	1	0	0	1	1	1	0	Transposase	DDE	domain
ATPase_2	PF01637.18	gi|384435140|ref|YP_005644498.1|	-	5.7e-14	52.6	7.1	5.7e-14	52.6	7.1	2.1	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|384435140|ref|YP_005644498.1|	-	1.5e-07	31.5	0.6	0.00057	19.9	0.1	2.5	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|384435140|ref|YP_005644498.1|	-	5.1e-06	26.8	0.2	7.9e-05	22.9	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA-ATPase_like	PF09820.9	gi|384435140|ref|YP_005644498.1|	-	2e-05	24.2	1.2	4.4e-05	23.1	0.7	1.8	1	1	0	1	1	1	1	Predicted	AAA-ATPase
AAA_35	PF14516.6	gi|384435140|ref|YP_005644498.1|	-	5.1e-05	22.3	2.2	0.0058	15.5	2.2	2.1	1	1	0	1	1	1	1	AAA-like	domain
AAA_16	PF13191.6	gi|384435140|ref|YP_005644498.1|	-	0.00028	21.3	0.0	0.00051	20.5	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
TrmB	PF01978.19	gi|384435140|ref|YP_005644498.1|	-	0.00032	20.5	0.3	0.0032	17.3	0.3	2.3	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TerB_C	PF15615.6	gi|384435140|ref|YP_005644498.1|	-	0.033	14.5	0.0	0.073	13.4	0.0	1.5	1	0	0	1	1	1	0	TerB-C	domain
FUR	PF01475.19	gi|384435140|ref|YP_005644498.1|	-	0.081	13.1	0.0	0.23	11.6	0.0	1.7	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
LrgA	PF03788.14	gi|384435141|ref|YP_005644499.1|	-	0.079	12.9	2.3	0.15	12.0	2.3	1.4	1	0	0	1	1	1	0	LrgA	family
DUF1440	PF07274.12	gi|384435142|ref|YP_005644500.1|	-	0.76	10.1	9.3	0.62	10.4	7.5	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1440)
DUF1129	PF06570.11	gi|384435142|ref|YP_005644500.1|	-	1.2	8.5	11.0	1.4	8.3	11.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
E1-E2_ATPase	PF00122.20	gi|384435142|ref|YP_005644500.1|	-	1.4	8.4	9.0	1.7	8.2	9.0	1.2	1	0	0	1	1	1	0	E1-E2	ATPase
PepSY_TM_like_2	PF16357.5	gi|384435142|ref|YP_005644500.1|	-	3.1	7.7	7.6	4.2	7.3	7.6	1.2	1	0	0	1	1	1	0	Putative	PepSY_TM-like
HEPN	PF05168.14	gi|384435146|ref|YP_005644504.1|	-	1.1e-22	80.4	0.2	1.2e-22	80.2	0.2	1.0	1	0	0	1	1	1	1	HEPN	domain
NTP_transf_2	PF01909.23	gi|384435147|ref|YP_005644505.1|	-	1.2e-07	31.9	0.5	1.5e-07	31.6	0.5	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|384435147|ref|YP_005644505.1|	-	3.2e-06	27.1	0.6	4.8e-06	26.6	0.6	1.3	1	1	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
MdcG	PF10620.9	gi|384435147|ref|YP_005644505.1|	-	0.15	11.8	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl-dephospho-CoA	transferase	MdcG
PaREP1	PF05942.11	gi|384435151|ref|YP_005644509.1|	-	6.3e-34	116.3	4.5	7e-34	116.2	4.5	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
DUF357	PF04010.13	gi|384435151|ref|YP_005644509.1|	-	0.00049	20.1	0.7	0.0018	18.3	0.2	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF357)
HEPN	PF05168.14	gi|384435151|ref|YP_005644509.1|	-	0.0044	17.2	4.1	0.0092	16.1	4.1	1.7	1	1	0	1	1	1	1	HEPN	domain
CIDR1_gamma	PF18562.1	gi|384435151|ref|YP_005644509.1|	-	0.035	14.2	0.2	0.084	13.0	0.2	1.6	1	0	0	1	1	1	0	Cysteine-Rich	Interdomain	Region	1	gamma
TPR_2	PF07719.17	gi|384435153|ref|YP_005644511.1|	-	0.059	13.5	0.5	42	4.6	0.0	3.8	3	0	0	3	3	3	0	Tetratricopeptide	repeat
Phlebovirus_G2	PF07245.11	gi|384435154|ref|YP_005644512.1|	-	0.22	9.9	0.1	0.22	10.0	0.1	1.0	1	0	0	1	1	1	0	Phlebovirus	glycoprotein	G2
DDE_Tnp_1	PF01609.21	gi|384435155|ref|YP_005644513.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
MFS_1	PF07690.16	gi|384435156|ref|YP_005644514.1|	-	2e-18	66.4	73.6	2.9e-13	49.5	36.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Amidohydro_2	PF04909.14	gi|384435157|ref|YP_005644515.1|	-	1.1e-49	169.8	0.0	1.2e-49	169.7	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase
SSF	PF00474.17	gi|384435158|ref|YP_005644516.1|	-	7.8e-17	61.2	33.1	7.8e-17	61.2	33.1	1.4	2	0	0	2	2	2	1	Sodium:solute	symporter	family
DUF2434	PF10361.9	gi|384435158|ref|YP_005644516.1|	-	0.018	14.1	2.1	0.039	12.9	2.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2434)
DUF2583	PF10762.9	gi|384435158|ref|YP_005644516.1|	-	5.6	7.4	6.4	1.3	9.5	0.4	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2583)
DUF3311	PF11755.8	gi|384435159|ref|YP_005644517.1|	-	1.3e-10	41.1	6.1	1.6e-10	40.8	6.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
DctQ	PF04290.12	gi|384435159|ref|YP_005644517.1|	-	0.024	14.6	3.2	0.027	14.4	3.2	1.1	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
7tm_7	PF08395.12	gi|384435159|ref|YP_005644517.1|	-	0.042	13.1	3.5	0.046	12.9	3.5	1.0	1	0	0	1	1	1	0	7tm	Chemosensory	receptor
DUF997	PF06196.12	gi|384435159|ref|YP_005644517.1|	-	0.14	12.2	5.7	0.17	11.9	5.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF997)
DUF485	PF04341.12	gi|384435159|ref|YP_005644517.1|	-	0.17	11.9	6.5	0.17	11.8	6.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF485
HTH_34	PF13601.6	gi|384435160|ref|YP_005644518.1|	-	4.6e-12	45.9	0.1	6.5e-12	45.5	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|384435160|ref|YP_005644518.1|	-	7.9e-08	32.0	0.0	1.9e-07	30.8	0.1	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384435160|ref|YP_005644518.1|	-	1.7e-06	28.0	0.0	2.4e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|384435160|ref|YP_005644518.1|	-	2.2e-05	24.3	0.1	3.4e-05	23.7	0.1	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|384435160|ref|YP_005644518.1|	-	0.00011	22.0	0.0	0.00017	21.4	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HxlR	PF01638.17	gi|384435160|ref|YP_005644518.1|	-	0.00029	20.6	0.1	0.00042	20.1	0.1	1.3	1	1	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_IclR	PF09339.10	gi|384435160|ref|YP_005644518.1|	-	0.0003	20.5	0.1	0.00047	19.9	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|384435160|ref|YP_005644518.1|	-	0.0018	18.1	0.0	0.0096	15.8	0.0	1.9	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|384435160|ref|YP_005644518.1|	-	0.013	15.0	0.2	0.03	13.9	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
PadR	PF03551.14	gi|384435160|ref|YP_005644518.1|	-	0.022	14.7	0.0	0.029	14.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|384435160|ref|YP_005644518.1|	-	0.04	14.3	0.0	0.056	13.8	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
ABC_tran	PF00005.27	gi|384435162|ref|YP_005644520.1|	-	2.5e-15	57.2	0.0	4.3e-15	56.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|384435162|ref|YP_005644520.1|	-	1e-09	38.6	2.6	2.4e-05	24.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|384435162|ref|YP_005644520.1|	-	7.4e-07	28.8	0.2	0.038	13.4	0.0	2.2	1	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|384435162|ref|YP_005644520.1|	-	0.00014	22.3	0.0	0.00026	21.4	0.0	1.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.6	gi|384435162|ref|YP_005644520.1|	-	0.00018	21.2	0.0	0.00036	20.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384435162|ref|YP_005644520.1|	-	0.00054	20.5	1.0	0.00086	19.9	0.9	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|384435162|ref|YP_005644520.1|	-	0.026	14.6	0.0	0.044	13.8	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|384435162|ref|YP_005644520.1|	-	0.029	14.1	0.4	0.26	10.9	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_13	PF13166.6	gi|384435162|ref|YP_005644520.1|	-	0.053	12.2	0.1	5.1	5.6	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|384435162|ref|YP_005644520.1|	-	0.055	13.4	0.2	0.11	12.4	0.2	1.5	1	0	0	1	1	1	0	NTPase
AAA_30	PF13604.6	gi|384435162|ref|YP_005644520.1|	-	0.074	12.8	0.1	0.21	11.3	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|384435162|ref|YP_005644520.1|	-	0.11	12.4	0.1	0.28	11.1	0.1	1.6	1	1	1	2	2	2	0	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|384435162|ref|YP_005644520.1|	-	0.14	12.5	0.1	0.46	10.8	0.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.6	gi|384435162|ref|YP_005644520.1|	-	0.16	12.3	0.3	0.4	11.0	0.3	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|384435162|ref|YP_005644520.1|	-	0.55	10.5	1.8	3.1	8.1	0.3	2.3	2	1	0	2	2	2	0	AAA	domain
DUF973	PF06157.11	gi|384435164|ref|YP_005644522.1|	-	9.5e-80	267.9	47.5	1.1e-79	267.7	47.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
DUF996	PF06195.13	gi|384435164|ref|YP_005644522.1|	-	0.00075	19.8	22.7	0.00075	19.8	22.7	2.9	2	1	0	3	3	3	1	Protein	of	unknown	function	(DUF996)
Trp_oprn_chp	PF09534.10	gi|384435164|ref|YP_005644522.1|	-	0.59	9.9	3.2	1.2	8.9	3.2	1.4	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
Transglut_core	PF01841.19	gi|384435165|ref|YP_005644523.1|	-	3.1e-19	69.5	0.0	5.9e-19	68.6	0.0	1.4	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Transglut_core3	PF13471.6	gi|384435165|ref|YP_005644523.1|	-	0.00011	22.1	0.0	0.00016	21.5	0.0	1.2	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF553	PF04473.12	gi|384435165|ref|YP_005644523.1|	-	0.00032	20.3	0.0	0.00074	19.1	0.0	1.6	1	1	0	1	1	1	1	Transglutaminase-like	domain
AhpC-TSA	PF00578.21	gi|384435167|ref|YP_005644525.1|	-	5.4e-32	110.3	0.0	1.1e-31	109.3	0.0	1.5	2	0	0	2	2	2	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|384435167|ref|YP_005644525.1|	-	8.6e-17	61.2	0.0	1.4e-16	60.5	0.0	1.4	1	1	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.9	gi|384435167|ref|YP_005644525.1|	-	1.1e-12	47.6	0.1	2e-12	46.7	0.1	1.4	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Amidase	PF01425.21	gi|384435168|ref|YP_005644526.1|	-	3.3e-100	336.2	0.0	4.1e-100	335.9	0.0	1.0	1	0	0	1	1	1	1	Amidase
OrfB_Zn_ribbon	PF07282.11	gi|384435169|ref|YP_005644527.1|	-	7.9e-27	93.0	0.1	1.4e-26	92.1	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|384435169|ref|YP_005644527.1|	-	2e-16	60.3	0.4	7.9e-16	58.4	0.0	2.0	2	0	0	2	2	2	1	Probable	transposase
zf-ribbon_3	PF13248.6	gi|384435169|ref|YP_005644527.1|	-	0.014	14.8	1.3	0.16	11.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|384435169|ref|YP_005644527.1|	-	0.015	14.8	0.1	4.5	6.9	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF1610	PF07754.11	gi|384435169|ref|YP_005644527.1|	-	0.32	11.0	2.3	0.86	9.6	2.3	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_2	PF13240.6	gi|384435169|ref|YP_005644527.1|	-	0.96	9.3	3.1	13	5.7	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|384435169|ref|YP_005644527.1|	-	1.2	9.1	3.4	4.4	7.3	0.3	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
GAS	PF13851.6	gi|384435169|ref|YP_005644527.1|	-	7.1	5.9	7.7	7.1	5.9	0.3	2.9	2	1	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
DUF3368	PF11848.8	gi|384435171|ref|YP_005644529.1|	-	0.018	14.8	0.0	0.11	12.4	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
DUF2471	PF10616.9	gi|384435172|ref|YP_005644530.1|	-	0.049	14.2	0.0	0.08	13.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2471)
TPR_14	PF13428.6	gi|384435172|ref|YP_005644530.1|	-	0.049	14.5	0.7	14	6.8	0.0	2.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Lactate_perm	PF02652.14	gi|384435173|ref|YP_005644531.1|	-	1.3e-106	357.5	36.9	1.9e-106	356.9	36.9	1.2	1	0	0	1	1	1	1	L-lactate	permease
DDE_3	PF13358.6	gi|384435174|ref|YP_005644532.1|	-	6.6e-19	68.1	0.0	8.1e-19	67.8	0.0	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|384435174|ref|YP_005644532.1|	-	0.091	13.0	0.0	0.17	12.1	0.0	1.6	1	0	0	1	1	1	0	Integrase	core	domain
DDE_1	PF03184.19	gi|384435174|ref|YP_005644532.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|384435175|ref|YP_005644533.1|	-	1.6e-15	56.5	0.3	3.6e-14	52.1	0.1	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|384435175|ref|YP_005644533.1|	-	6.1e-08	32.2	0.1	2.7e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_1	PF01527.20	gi|384435175|ref|YP_005644533.1|	-	3.8e-07	30.3	1.3	5.7e-07	29.8	0.2	1.8	2	0	0	2	2	2	1	Transposase
HTH_28	PF13518.6	gi|384435175|ref|YP_005644533.1|	-	6e-07	29.5	0.0	2.4e-06	27.6	0.0	2.1	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|384435175|ref|YP_005644533.1|	-	4e-06	26.9	0.8	8.9e-05	22.6	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.16	gi|384435175|ref|YP_005644533.1|	-	6.2e-06	26.2	2.8	2.1e-05	24.5	2.8	1.8	1	1	0	1	1	1	1	Transposase
HTH_7	PF02796.15	gi|384435175|ref|YP_005644533.1|	-	6.8e-05	22.9	0.1	0.00013	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_32	PF13565.6	gi|384435175|ref|YP_005644533.1|	-	0.00012	22.6	0.0	0.0004	21.0	0.0	1.9	3	0	0	3	3	1	1	Homeodomain-like	domain
HTH_psq	PF05225.16	gi|384435175|ref|YP_005644533.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_1_2	PF13022.6	gi|384435175|ref|YP_005644533.1|	-	0.00079	19.6	0.1	0.0018	18.4	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	of	insertion	element	transposase
MerR	PF00376.23	gi|384435175|ref|YP_005644533.1|	-	0.0055	16.4	0.0	0.012	15.4	0.0	1.5	1	0	0	1	1	1	1	MerR	family	regulatory	protein
DUF4304	PF14137.6	gi|384435175|ref|YP_005644533.1|	-	0.0099	16.0	1.6	0.052	13.7	0.1	2.5	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4304)
TnsD	PF15978.5	gi|384435175|ref|YP_005644533.1|	-	0.01	14.9	0.1	0.014	14.5	0.1	1.2	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
HTH_29	PF13551.6	gi|384435175|ref|YP_005644533.1|	-	0.01	15.8	0.0	0.029	14.4	0.0	1.9	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_22	PF13309.6	gi|384435175|ref|YP_005644533.1|	-	0.017	15.2	0.1	0.061	13.4	0.0	2.0	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|384435175|ref|YP_005644533.1|	-	0.021	14.2	0.1	0.066	12.6	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CENP-B_N	PF04218.13	gi|384435175|ref|YP_005644533.1|	-	0.027	14.1	0.0	0.069	12.8	0.0	1.7	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
MerR_1	PF13411.6	gi|384435175|ref|YP_005644533.1|	-	0.03	14.4	0.5	0.14	12.3	0.0	2.3	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.22	gi|384435175|ref|YP_005644533.1|	-	0.072	13.2	0.0	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
Sigma70_r4_2	PF08281.12	gi|384435175|ref|YP_005644533.1|	-	0.13	11.9	0.0	0.28	10.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
MFS_1	PF07690.16	gi|384435176|ref|YP_005644534.1|	-	2.3e-40	138.6	48.1	4.7e-40	137.6	44.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|384435176|ref|YP_005644534.1|	-	1.3e-07	30.9	9.5	1.3e-07	30.9	9.5	2.7	1	1	0	2	2	2	2	Sugar	(and	other)	transporter
Fer4_21	PF14697.6	gi|384435177|ref|YP_005644535.1|	-	1.4e-12	47.5	13.9	2.1e-12	47.0	13.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|384435177|ref|YP_005644535.1|	-	1.9e-09	36.9	19.5	1.5e-05	24.6	5.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|384435177|ref|YP_005644535.1|	-	8.9e-07	29.4	11.5	1.9e-06	28.4	11.5	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384435177|ref|YP_005644535.1|	-	8.7e-06	25.5	12.4	0.0024	17.8	2.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|384435177|ref|YP_005644535.1|	-	0.00016	22.2	7.0	0.1	13.1	0.7	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384435177|ref|YP_005644535.1|	-	0.00037	20.6	15.3	0.00063	19.9	15.3	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384435177|ref|YP_005644535.1|	-	0.00037	21.4	13.2	0.012	16.5	3.1	2.5	1	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.6	gi|384435177|ref|YP_005644535.1|	-	0.0011	19.1	14.6	0.018	15.2	2.8	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384435177|ref|YP_005644535.1|	-	0.0016	18.8	12.0	0.035	14.6	2.5	2.4	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|384435177|ref|YP_005644535.1|	-	0.0054	17.5	8.2	0.012	16.4	0.8	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|384435177|ref|YP_005644535.1|	-	0.0061	17.1	18.8	0.0067	16.9	5.7	2.7	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_6	PF12837.7	gi|384435177|ref|YP_005644535.1|	-	0.078	13.1	21.4	0.09	12.9	7.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|384435177|ref|YP_005644535.1|	-	0.21	12.2	17.7	0.46	11.1	4.5	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|384435177|ref|YP_005644535.1|	-	1	10.2	16.4	0.27	12.0	4.0	2.5	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|384435177|ref|YP_005644535.1|	-	4.7	8.4	15.7	0.37	11.8	5.5	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
POR_N	PF01855.19	gi|384435178|ref|YP_005644536.1|	-	1.6e-65	221.1	0.1	2e-65	220.8	0.1	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
PFOR_II	PF17147.4	gi|384435178|ref|YP_005644536.1|	-	1.7e-34	118.2	0.1	3.2e-34	117.3	0.1	1.5	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
Transketolase_C	PF02780.20	gi|384435178|ref|YP_005644536.1|	-	0.00011	22.1	0.0	0.00025	20.9	0.0	1.5	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.18	gi|384435178|ref|YP_005644536.1|	-	0.001	18.7	0.8	0.0023	17.6	0.8	1.6	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|384435179|ref|YP_005644537.1|	-	1.6e-18	67.0	0.2	2.2e-18	66.5	0.2	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.6	gi|384435179|ref|YP_005644537.1|	-	0.0029	16.9	0.0	0.0057	15.9	0.0	1.5	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
SMC_Nse1	PF07574.13	gi|384435179|ref|YP_005644537.1|	-	0.15	12.0	0.0	0.25	11.2	0.0	1.3	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
HTH_24	PF13412.6	gi|384435180|ref|YP_005644538.1|	-	2.2e-15	55.9	1.8	5.1e-15	54.8	1.8	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|384435180|ref|YP_005644538.1|	-	1.1e-12	47.5	0.1	2.6e-12	46.4	0.1	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|384435180|ref|YP_005644538.1|	-	8.7e-09	35.2	0.0	1.4e-08	34.6	0.0	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|384435180|ref|YP_005644538.1|	-	1.7e-06	28.0	0.0	2.9e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|384435180|ref|YP_005644538.1|	-	1.6e-05	24.3	0.0	5.8e-05	22.5	0.0	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|384435180|ref|YP_005644538.1|	-	0.00013	21.7	0.1	0.002	17.9	0.0	2.6	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|384435180|ref|YP_005644538.1|	-	0.00032	20.5	0.0	0.00059	19.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|384435180|ref|YP_005644538.1|	-	0.00036	20.4	0.0	0.0011	18.8	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|384435180|ref|YP_005644538.1|	-	0.00049	20.0	0.4	0.0012	18.7	0.4	1.7	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|384435180|ref|YP_005644538.1|	-	0.0005	19.9	0.0	0.0024	17.7	0.0	1.9	2	0	0	2	2	2	1	MarR	family
Sigma70_r4_2	PF08281.12	gi|384435180|ref|YP_005644538.1|	-	0.0011	18.6	0.0	0.0024	17.5	0.0	1.6	2	0	0	2	2	1	1	Sigma-70,	region	4
HTH_30	PF13556.6	gi|384435180|ref|YP_005644538.1|	-	0.0023	17.7	0.0	0.0078	16.0	0.0	1.9	2	0	0	2	2	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|384435180|ref|YP_005644538.1|	-	0.0031	17.2	0.1	0.025	14.3	0.1	2.2	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MerR_1	PF13411.6	gi|384435180|ref|YP_005644538.1|	-	0.0048	17.0	0.1	1.5	8.9	0.0	2.8	3	0	0	3	3	3	1	MerR	HTH	family	regulatory	protein
HTH_IclR	PF09339.10	gi|384435180|ref|YP_005644538.1|	-	0.0064	16.3	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_8	PF02954.19	gi|384435180|ref|YP_005644538.1|	-	0.011	15.5	0.1	0.025	14.4	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_27	PF13463.6	gi|384435180|ref|YP_005644538.1|	-	0.015	15.8	0.1	0.14	12.7	0.1	2.1	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_10	PF04967.12	gi|384435180|ref|YP_005644538.1|	-	0.016	15.0	0.1	0.047	13.5	0.0	1.8	2	0	0	2	2	1	0	HTH	DNA	binding	domain
MerR	PF00376.23	gi|384435180|ref|YP_005644538.1|	-	0.021	14.6	0.0	0.076	12.8	0.0	1.9	2	0	0	2	2	2	0	MerR	family	regulatory	protein
DUF742	PF05331.11	gi|384435180|ref|YP_005644538.1|	-	0.04	13.7	0.0	0.072	12.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
TrmB	PF01978.19	gi|384435180|ref|YP_005644538.1|	-	0.045	13.6	0.2	0.12	12.3	0.1	1.7	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|384435180|ref|YP_005644538.1|	-	0.046	13.8	0.0	0.45	10.7	0.0	2.4	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|384435180|ref|YP_005644538.1|	-	0.052	13.5	0.1	0.18	11.8	0.1	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_12	PF08461.10	gi|384435180|ref|YP_005644538.1|	-	0.066	13.2	1.1	0.43	10.5	0.6	2.4	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_WhiA	PF02650.14	gi|384435180|ref|YP_005644538.1|	-	0.088	13.1	0.0	0.19	12.1	0.0	1.5	1	0	0	1	1	1	0	WhiA	C-terminal	HTH	domain
TFIIE_alpha	PF02002.17	gi|384435180|ref|YP_005644538.1|	-	0.094	12.6	1.1	0.15	12.0	0.3	1.8	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_38	PF13936.6	gi|384435180|ref|YP_005644538.1|	-	0.11	12.3	1.0	0.62	9.9	0.1	2.5	3	0	0	3	3	3	0	Helix-turn-helix	domain
FGGY_N	PF00370.21	gi|384435182|ref|YP_005644540.1|	-	4e-78	262.4	0.0	5.4e-78	261.9	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|384435182|ref|YP_005644540.1|	-	1.1e-61	208.0	0.1	4.7e-61	206.0	0.1	1.9	2	0	0	2	2	2	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|384435182|ref|YP_005644540.1|	-	0.11	12.0	0.1	0.45	10.0	0.0	1.9	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
Sugar_tr	PF00083.24	gi|384435183|ref|YP_005644541.1|	-	1.8e-41	142.4	32.7	3.3e-40	138.3	32.7	2.0	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|384435183|ref|YP_005644541.1|	-	5.8e-33	114.3	44.0	3.1e-29	102.0	35.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.13	gi|384435183|ref|YP_005644541.1|	-	3.9	5.7	12.3	0.13	10.7	2.4	2.4	3	0	0	3	3	3	0	Transmembrane	secretion	effector
OATP	PF03137.20	gi|384435183|ref|YP_005644541.1|	-	4.7	5.4	16.7	0.081	11.2	1.2	3.1	2	1	1	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
ABC2_membrane	PF01061.24	gi|384435184|ref|YP_005644542.1|	-	5.3e-36	124.0	21.6	5.3e-36	124.0	21.6	2.0	2	1	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|384435184|ref|YP_005644542.1|	-	1.1e-14	54.4	26.5	1.1e-14	54.4	26.5	1.6	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|384435184|ref|YP_005644542.1|	-	0.00013	21.4	27.0	0.00037	19.9	27.0	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|384435184|ref|YP_005644542.1|	-	0.0031	17.5	11.4	0.0031	17.5	11.4	2.4	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|384435184|ref|YP_005644542.1|	-	0.0042	16.7	14.6	0.0042	16.7	14.6	2.0	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
EMP70	PF02990.16	gi|384435184|ref|YP_005644542.1|	-	0.012	14.3	1.2	0.012	14.3	1.2	2.0	1	1	0	2	2	2	0	Endomembrane	protein	70
ABC_tran	PF00005.27	gi|384435185|ref|YP_005644543.1|	-	8.1e-32	110.6	0.0	1.3e-31	109.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
DUF4162	PF13732.6	gi|384435185|ref|YP_005644543.1|	-	1.6e-13	51.2	0.8	3e-13	50.3	0.3	1.7	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_21	PF13304.6	gi|384435185|ref|YP_005644543.1|	-	6.5e-12	45.9	0.5	7.4e-08	32.5	0.0	2.7	2	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|384435185|ref|YP_005644543.1|	-	6.6e-05	23.5	0.0	0.00014	22.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|384435185|ref|YP_005644543.1|	-	0.00061	19.6	0.0	0.39	10.4	0.0	2.4	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_29	PF13555.6	gi|384435185|ref|YP_005644543.1|	-	0.0011	18.7	0.0	0.0022	17.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|384435185|ref|YP_005644543.1|	-	0.0024	17.4	0.2	1.1	8.7	0.0	2.4	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|384435185|ref|YP_005644543.1|	-	0.021	14.4	0.0	0.042	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|384435185|ref|YP_005644543.1|	-	0.06	13.8	0.3	0.54	10.7	0.3	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SRP54	PF00448.22	gi|384435185|ref|YP_005644543.1|	-	0.072	12.7	0.1	0.25	10.9	0.0	1.9	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
RsgA_GTPase	PF03193.16	gi|384435185|ref|YP_005644543.1|	-	0.13	12.2	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|384435185|ref|YP_005644543.1|	-	0.13	12.5	0.0	0.2	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PadR	PF03551.14	gi|384435186|ref|YP_005644544.1|	-	4.8e-13	48.9	0.0	1e-12	47.8	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|384435186|ref|YP_005644544.1|	-	0.00095	19.1	2.1	0.001	19.0	0.1	2.1	3	0	0	3	3	3	1	Winged	helix-turn-helix
RTP	PF02334.16	gi|384435186|ref|YP_005644544.1|	-	0.0015	19.2	0.0	0.008	16.8	0.0	1.9	1	1	1	2	2	2	1	Replication	terminator	protein
Mrr_N	PF14338.6	gi|384435186|ref|YP_005644544.1|	-	0.01	16.0	0.1	0.031	14.4	0.1	1.8	1	0	0	1	1	1	0	Mrr	N-terminal	domain
HTH_12	PF08461.10	gi|384435186|ref|YP_005644544.1|	-	0.013	15.5	0.0	0.035	14.0	0.0	1.8	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
DUF4364	PF14277.6	gi|384435186|ref|YP_005644544.1|	-	0.031	14.0	0.5	0.057	13.2	0.4	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
ATPase_2	PF01637.18	gi|384435187|ref|YP_005644545.1|	-	1.1e-16	61.5	3.4	4.2e-16	59.6	3.4	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|384435187|ref|YP_005644545.1|	-	7.3e-07	29.3	0.1	0.017	15.2	0.1	2.7	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|384435187|ref|YP_005644545.1|	-	1.5e-06	28.7	0.0	3.4e-06	27.5	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
TrmB	PF01978.19	gi|384435187|ref|YP_005644545.1|	-	0.028	14.3	0.1	0.24	11.3	0.0	2.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
PRD	PF00874.20	gi|384435187|ref|YP_005644545.1|	-	0.21	11.9	1.8	3.8	7.9	0.2	2.8	3	0	0	3	3	3	0	PRD	domain
4HBT	PF03061.22	gi|384435188|ref|YP_005644546.1|	-	2.2e-18	66.4	0.0	3.5e-18	65.7	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.6	gi|384435188|ref|YP_005644546.1|	-	0.0025	18.1	0.0	0.0034	17.7	0.0	1.2	1	0	0	1	1	1	1	Thioesterase-like	superfamily
DUF4442	PF14539.6	gi|384435188|ref|YP_005644546.1|	-	0.011	15.8	0.0	0.014	15.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4442)
DDE_Tnp_1	PF01609.21	gi|384435189|ref|YP_005644547.1|	-	1.1e-11	44.8	0.1	1.8e-11	44.1	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Stap_Strp_tox_C	PF02876.17	gi|384435190|ref|YP_005644548.1|	-	0.0028	18.0	4.1	0.0035	17.6	4.1	1.1	1	0	0	1	1	1	1	Staphylococcal/Streptococcal	toxin,	beta-grasp	domain
DDE_Tnp_1	PF01609.21	gi|384435191|ref|YP_005644549.1|	-	2.1e-16	60.2	0.0	2.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
SurA_N_3	PF13624.6	gi|384435192|ref|YP_005644550.1|	-	0.13	12.1	2.7	0.12	12.2	2.0	1.4	1	1	0	1	1	1	0	SurA	N-terminal	domain
DUF2291	PF10054.9	gi|384435192|ref|YP_005644550.1|	-	0.29	10.8	3.1	0.35	10.6	3.1	1.2	1	0	0	1	1	1	0	Predicted	periplasmic	lipoprotein	(DUF2291)
DUF2203	PF09969.9	gi|384435193|ref|YP_005644551.1|	-	4.7e-29	101.6	0.1	3.4e-28	98.8	0.1	1.9	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2203)
Ribosomal_S20p	PF01649.18	gi|384435193|ref|YP_005644551.1|	-	0.14	12.8	0.1	0.19	12.4	0.1	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S20
Ald_Xan_dh_C2	PF02738.18	gi|384435194|ref|YP_005644552.1|	-	6e-156	520.1	0.0	7.3e-156	519.8	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|384435194|ref|YP_005644552.1|	-	5.5e-32	110.4	0.1	1.5e-31	109.0	0.0	1.8	2	0	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF2147	PF09917.9	gi|384435194|ref|YP_005644552.1|	-	0.023	15.3	0.1	0.23	12.1	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2147)
Rhodanese	PF00581.20	gi|384435195|ref|YP_005644553.1|	-	4.3e-13	49.7	0.0	6.6e-13	49.1	0.0	1.2	1	0	0	1	1	1	1	Rhodanese-like	domain
DDE_Tnp_2	PF04693.12	gi|384435197|ref|YP_005644555.1|	-	9.5e-178	590.4	2.8	1.1e-177	590.2	2.8	1.0	1	0	0	1	1	1	1	Archaeal	putative	transposase	ISC1217
DDE_5	PF13546.6	gi|384435197|ref|YP_005644555.1|	-	4.5e-05	22.9	0.0	8.9e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1	PF01609.21	gi|384435197|ref|YP_005644555.1|	-	0.0007	19.3	0.0	0.0013	18.5	0.0	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4736	PF15883.5	gi|384435197|ref|YP_005644555.1|	-	0.046	13.4	0.1	0.088	12.5	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4736)
Peptidase_M1	PF01433.20	gi|384435198|ref|YP_005644556.1|	-	7.2e-83	277.5	3.2	1.1e-82	276.9	3.2	1.3	1	0	0	1	1	1	1	Peptidase	family	M1	domain
Peptidase_M1_N	PF17900.1	gi|384435198|ref|YP_005644556.1|	-	1.7e-36	126.2	0.1	3.3e-36	125.2	0.1	1.5	1	0	0	1	1	1	1	Peptidase	M1	N-terminal	domain
ERAP1_C	PF11838.8	gi|384435198|ref|YP_005644556.1|	-	6.2e-29	101.5	0.1	1.1e-28	100.7	0.1	1.4	1	0	0	1	1	1	1	ERAP1-like	C-terminal	domain
Aminopep	PF10023.9	gi|384435198|ref|YP_005644556.1|	-	0.0083	15.5	1.0	0.021	14.2	0.1	1.9	2	0	0	2	2	2	1	Putative	aminopeptidase
COQ7	PF03232.13	gi|384435199|ref|YP_005644557.1|	-	0.019	14.8	0.0	0.045	13.5	0.0	1.7	1	1	0	1	1	1	0	Ubiquinone	biosynthesis	protein	COQ7
AP_endonuc_2	PF01261.24	gi|384435200|ref|YP_005644558.1|	-	1.4e-27	96.5	0.2	1.8e-27	96.1	0.2	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UvdE	PF03851.14	gi|384435200|ref|YP_005644558.1|	-	0.001	18.4	0.0	0.0013	18.1	0.0	1.2	1	0	0	1	1	1	1	UV-endonuclease	UvdE
Amidohydro_1	PF01979.20	gi|384435200|ref|YP_005644558.1|	-	0.017	14.5	0.2	3.3	6.9	0.0	2.2	1	1	1	2	2	2	0	Amidohydrolase	family
Reoviridae_Vp9	PF08978.10	gi|384435200|ref|YP_005644558.1|	-	0.21	10.8	0.0	0.29	10.3	0.0	1.2	1	0	0	1	1	1	0	Reoviridae	VP9
Hydrolase_3	PF08282.12	gi|384435201|ref|YP_005644559.1|	-	2.9e-25	89.5	0.3	3.5e-16	59.7	0.2	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|384435201|ref|YP_005644559.1|	-	2.8e-07	30.3	0.0	0.012	15.2	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
MTS	PF05175.14	gi|384435202|ref|YP_005644560.1|	-	1e-11	44.7	0.0	1.4e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|384435202|ref|YP_005644560.1|	-	3.4e-07	30.9	0.1	5.5e-07	30.2	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384435202|ref|YP_005644560.1|	-	5.6e-07	29.5	0.0	6.5e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
DUF43	PF01861.16	gi|384435202|ref|YP_005644560.1|	-	5.1e-06	25.9	0.0	6.2e-06	25.6	0.0	1.1	1	0	0	1	1	1	1	Branched-chain	polyamine	synthase	A	C-terminal	domain
Methyltransf_11	PF08241.12	gi|384435202|ref|YP_005644560.1|	-	6.2e-06	26.8	0.0	1.1e-05	26.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|384435202|ref|YP_005644560.1|	-	4.1e-05	23.1	0.0	6.8e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
TehB	PF03848.14	gi|384435202|ref|YP_005644560.1|	-	6e-05	22.5	0.2	9.7e-05	21.9	0.2	1.3	1	1	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_23	PF13489.6	gi|384435202|ref|YP_005644560.1|	-	0.00019	21.3	0.0	0.00022	21.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|384435202|ref|YP_005644560.1|	-	0.00032	20.4	0.0	0.00042	20.0	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
UPF0020	PF01170.18	gi|384435202|ref|YP_005644560.1|	-	0.0024	17.6	0.3	0.037	13.7	0.3	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
N6_Mtase	PF02384.16	gi|384435202|ref|YP_005644560.1|	-	0.0055	16.0	0.0	2.6	7.2	0.0	2.2	2	0	0	2	2	2	2	N-6	DNA	Methylase
Methyltransf_16	PF10294.9	gi|384435202|ref|YP_005644560.1|	-	0.006	16.3	0.2	0.0095	15.7	0.2	1.4	1	1	0	1	1	1	1	Lysine	methyltransferase
RrnaAD	PF00398.20	gi|384435202|ref|YP_005644560.1|	-	0.0088	15.1	0.0	0.012	14.7	0.0	1.3	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_12	PF08242.12	gi|384435202|ref|YP_005644560.1|	-	0.031	15.0	0.0	0.048	14.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|384435202|ref|YP_005644560.1|	-	0.064	13.2	0.0	0.08	12.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
GidB	PF02527.15	gi|384435202|ref|YP_005644560.1|	-	0.14	11.4	0.0	0.21	10.9	0.0	1.2	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
HAD_2	PF13419.6	gi|384435203|ref|YP_005644561.1|	-	1.6e-17	64.2	0.0	2.1e-17	63.8	0.0	1.3	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|384435203|ref|YP_005644561.1|	-	6.5e-14	52.7	0.0	1.4e-13	51.6	0.0	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|384435203|ref|YP_005644561.1|	-	1.7e-05	24.8	0.0	4e-05	23.6	0.0	1.7	2	0	0	2	2	2	1	HAD-hyrolase-like
HTH_20	PF12840.7	gi|384435204|ref|YP_005644562.1|	-	1.5e-05	24.9	0.5	2e-05	24.6	0.1	1.4	2	0	0	2	2	1	1	Helix-turn-helix	domain
HypA	PF01155.19	gi|384435204|ref|YP_005644562.1|	-	0.00093	19.2	0.1	0.0011	19.0	0.1	1.2	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|384435204|ref|YP_005644562.1|	-	0.0052	16.3	1.6	2.1	8.0	0.0	2.3	2	0	0	2	2	2	2	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|384435204|ref|YP_005644562.1|	-	0.0058	16.7	1.7	0.012	15.7	1.7	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
SMC_ScpB	PF04079.16	gi|384435204|ref|YP_005644562.1|	-	0.007	16.0	0.0	0.0079	15.8	0.0	1.1	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
LexA_DNA_bind	PF01726.16	gi|384435204|ref|YP_005644562.1|	-	0.009	15.8	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
TrmB	PF01978.19	gi|384435204|ref|YP_005644562.1|	-	0.06	13.2	0.1	0.094	12.6	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|384435204|ref|YP_005644562.1|	-	0.073	13.0	0.1	0.12	12.4	0.1	1.5	1	1	0	1	1	1	0	HTH	domain
UPF0122	PF04297.14	gi|384435204|ref|YP_005644562.1|	-	0.074	13.3	0.0	0.096	12.9	0.0	1.2	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
zf-ribbon_3	PF13248.6	gi|384435204|ref|YP_005644562.1|	-	0.075	12.5	2.4	6.3	6.4	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|384435204|ref|YP_005644562.1|	-	0.38	11.3	3.5	0.84	10.2	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
ADK_lid	PF05191.14	gi|384435204|ref|YP_005644562.1|	-	0.4	10.7	3.8	0.9	9.6	3.8	1.5	1	0	0	1	1	1	0	Adenylate	kinase,	active	site	lid
Rubredoxin	PF00301.20	gi|384435204|ref|YP_005644562.1|	-	0.6	10.2	4.4	4.4	7.4	0.2	2.2	1	1	1	2	2	2	0	Rubredoxin
zf-trcl	PF13451.6	gi|384435204|ref|YP_005644562.1|	-	3.1	7.8	6.4	3.4	7.6	0.9	2.3	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
RmlD_sub_bind	PF04321.17	gi|384435205|ref|YP_005644563.1|	-	1.3e-15	57.3	0.0	1.6e-15	57.0	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|384435205|ref|YP_005644563.1|	-	0.00016	21.2	0.0	0.00036	20.1	0.0	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FAD_binding_4	PF01565.23	gi|384435206|ref|YP_005644564.1|	-	1e-32	112.8	0.0	2.3e-32	111.6	0.0	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|384435206|ref|YP_005644564.1|	-	2.2e-08	34.5	2.0	4e-08	33.7	2.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|384435206|ref|YP_005644564.1|	-	7.5e-08	32.7	1.0	1.3e-07	31.9	1.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|384435206|ref|YP_005644564.1|	-	2e-05	25.1	4.2	4.5e-05	23.9	4.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|384435206|ref|YP_005644564.1|	-	9.6e-05	22.5	5.2	0.0009	19.4	6.0	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|384435206|ref|YP_005644564.1|	-	0.00042	21.2	3.8	0.0012	19.7	3.8	1.9	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.6	gi|384435206|ref|YP_005644564.1|	-	0.0005	20.3	1.8	0.21	11.8	0.2	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|384435206|ref|YP_005644564.1|	-	0.00074	19.6	9.5	0.017	15.2	10.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|384435206|ref|YP_005644564.1|	-	0.0054	16.7	1.5	0.0054	16.7	1.5	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|384435206|ref|YP_005644564.1|	-	0.01	15.6	15.0	0.045	13.6	2.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
FAD-oxidase_C	PF02913.19	gi|384435206|ref|YP_005644564.1|	-	0.012	15.2	0.0	0.17	11.5	0.0	2.5	1	1	0	1	1	1	0	FAD	linked	oxidases,	C-terminal	domain
Fer4_21	PF14697.6	gi|384435206|ref|YP_005644564.1|	-	0.048	13.8	8.5	0.39	10.9	0.9	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|384435206|ref|YP_005644564.1|	-	0.33	10.7	1.9	18	5.1	0.3	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
CelTOS	PF18659.1	gi|384435206|ref|YP_005644564.1|	-	0.92	10.0	6.4	0.18	12.3	0.3	2.5	1	1	1	2	2	2	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
Fer4_6	PF12837.7	gi|384435206|ref|YP_005644564.1|	-	3.6	7.8	15.6	0.027	14.5	2.9	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|384435206|ref|YP_005644564.1|	-	4.2	8.3	7.9	15	6.5	0.5	3.0	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
HIT	PF01230.23	gi|384435207|ref|YP_005644565.1|	-	3.3e-25	88.7	0.0	4.6e-25	88.2	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.8	gi|384435207|ref|YP_005644565.1|	-	5.4e-13	49.4	0.1	8.8e-13	48.7	0.0	1.4	1	1	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|384435207|ref|YP_005644565.1|	-	0.014	15.2	0.1	0.02	14.7	0.1	1.4	1	1	0	1	1	1	0	Protein	similar	to	CwfJ	C-terminus	1
Asp_protease_2	PF13650.6	gi|384435208|ref|YP_005644566.1|	-	0.00023	21.7	0.0	0.00035	21.2	0.0	1.4	1	1	0	1	1	1	1	Aspartyl	protease
gag-asp_proteas	PF13975.6	gi|384435208|ref|YP_005644566.1|	-	0.021	15.4	0.0	0.03	14.9	0.0	1.2	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
RHH_1	PF01402.21	gi|384435209|ref|YP_005644567.1|	-	0.00045	20.0	0.1	0.00096	19.0	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|384435209|ref|YP_005644567.1|	-	0.14	12.2	0.1	0.22	11.5	0.1	1.3	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
SVM_signal	PF12113.8	gi|384435212|ref|YP_005644570.1|	-	0.28	11.1	8.9	2	8.4	8.9	2.5	1	0	0	1	1	1	0	SVM	protein	signal	sequence
Reticulon	PF02453.17	gi|384435212|ref|YP_005644570.1|	-	3.4	7.6	9.4	2.8	7.9	0.2	3.1	2	1	0	2	2	2	0	Reticulon
MHYT	PF03707.16	gi|384435212|ref|YP_005644570.1|	-	8.8	6.6	8.5	19	5.5	1.1	3.1	2	1	0	2	2	2	0	Bacterial	signalling	protein	N	terminal	repeat
NUDIX	PF00293.28	gi|384435213|ref|YP_005644571.1|	-	3.7e-14	52.9	0.0	4.5e-14	52.6	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
Chlor_dismutase	PF06778.12	gi|384435215|ref|YP_005644573.1|	-	4.7e-48	163.4	0.9	5e-48	163.3	0.2	1.3	1	1	0	1	1	1	1	Chlorite	dismutase
GYD	PF08734.11	gi|384435215|ref|YP_005644573.1|	-	0.16	11.9	0.0	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	GYD	domain
DUF5474	PF17568.2	gi|384435216|ref|YP_005644574.1|	-	0.004	17.2	0.1	0.062	13.4	0.0	2.9	2	1	0	2	2	2	1	Family	of	unknown	function	(DUF5474)
CNP_C_terminal	PF17839.1	gi|384435216|ref|YP_005644574.1|	-	0.083	13.6	0.6	0.26	12.0	0.0	2.1	2	0	0	2	2	2	0	C-terminal	domain	of	cyclic	nucleotide	phosphodiesterase
Drf_GBD	PF06371.13	gi|384435216|ref|YP_005644574.1|	-	0.11	12.0	0.0	0.26	10.8	0.0	1.5	1	0	0	1	1	1	0	Diaphanous	GTPase-binding	Domain
NTPase_1	PF03266.15	gi|384435217|ref|YP_005644575.1|	-	4.8e-52	176.2	0.2	5.9e-52	176.0	0.2	1.1	1	0	0	1	1	1	1	NTPase
AAA	PF00004.29	gi|384435217|ref|YP_005644575.1|	-	6.2e-06	26.7	0.0	8.9e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|384435217|ref|YP_005644575.1|	-	9.4e-06	26.0	0.0	0.02	15.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|384435217|ref|YP_005644575.1|	-	4.1e-05	23.9	0.0	9.2e-05	22.7	0.0	1.6	1	1	1	2	2	2	1	AAA	domain
MeaB	PF03308.16	gi|384435217|ref|YP_005644575.1|	-	0.00012	21.2	0.0	0.00022	20.3	0.0	1.5	2	0	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|384435217|ref|YP_005644575.1|	-	0.00027	20.7	0.0	0.00055	19.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|384435217|ref|YP_005644575.1|	-	0.00028	20.9	0.5	0.00059	19.8	0.4	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|384435217|ref|YP_005644575.1|	-	0.00039	21.0	0.0	0.00056	20.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|384435217|ref|YP_005644575.1|	-	0.00062	19.5	0.0	0.38	10.5	0.0	2.3	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|384435217|ref|YP_005644575.1|	-	0.00093	19.6	0.0	0.0015	19.0	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
CbiA	PF01656.23	gi|384435217|ref|YP_005644575.1|	-	0.0011	19.1	0.2	0.0023	18.0	0.2	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|384435217|ref|YP_005644575.1|	-	0.0028	17.5	0.0	0.0059	16.4	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.14	gi|384435217|ref|YP_005644575.1|	-	0.0038	17.1	0.0	0.01	15.8	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_7	PF12775.7	gi|384435217|ref|YP_005644575.1|	-	0.0054	16.3	0.0	0.016	14.7	0.0	1.7	2	0	0	2	2	1	1	P-loop	containing	dynein	motor	region
AAA_14	PF13173.6	gi|384435217|ref|YP_005644575.1|	-	0.0055	16.7	0.3	0.11	12.5	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.9	gi|384435217|ref|YP_005644575.1|	-	0.0062	15.8	0.1	0.0063	15.8	0.1	1.3	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
IstB_IS21	PF01695.17	gi|384435217|ref|YP_005644575.1|	-	0.0085	15.8	0.0	1.7	8.3	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|384435217|ref|YP_005644575.1|	-	0.012	15.8	0.0	0.015	15.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DAP3	PF10236.9	gi|384435217|ref|YP_005644575.1|	-	0.019	14.2	0.0	0.035	13.3	0.0	1.5	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
ABC_tran	PF00005.27	gi|384435217|ref|YP_005644575.1|	-	0.022	15.3	0.5	0.12	12.9	0.1	2.1	2	1	1	3	3	2	0	ABC	transporter
Pox_A32	PF04665.12	gi|384435217|ref|YP_005644575.1|	-	0.023	14.2	0.1	0.27	10.7	0.0	2.0	2	0	0	2	2	2	0	Poxvirus	A32	protein
NACHT	PF05729.12	gi|384435217|ref|YP_005644575.1|	-	0.023	14.6	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
APS_kinase	PF01583.20	gi|384435217|ref|YP_005644575.1|	-	0.024	14.5	0.0	0.049	13.5	0.0	1.5	2	0	0	2	2	1	0	Adenylylsulphate	kinase
AAA_5	PF07728.14	gi|384435217|ref|YP_005644575.1|	-	0.025	14.6	0.1	0.55	10.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
FeoB_N	PF02421.18	gi|384435217|ref|YP_005644575.1|	-	0.035	13.6	0.3	0.063	12.8	0.2	1.5	1	1	0	1	1	1	0	Ferrous	iron	transport	protein	B
NB-ARC	PF00931.22	gi|384435217|ref|YP_005644575.1|	-	0.035	13.3	0.0	0.055	12.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
MMR_HSR1	PF01926.23	gi|384435217|ref|YP_005644575.1|	-	0.042	13.9	1.2	0.12	12.4	1.2	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
cobW	PF02492.19	gi|384435217|ref|YP_005644575.1|	-	0.044	13.4	0.3	0.084	12.5	0.2	1.8	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
ATPase	PF06745.13	gi|384435217|ref|YP_005644575.1|	-	0.051	12.9	0.2	0.079	12.3	0.2	1.6	1	1	0	1	1	1	0	KaiC
AAA_24	PF13479.6	gi|384435217|ref|YP_005644575.1|	-	0.051	13.3	0.1	0.15	11.7	0.0	1.7	2	1	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|384435217|ref|YP_005644575.1|	-	0.068	13.2	0.1	0.19	11.7	0.0	1.7	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
ArsA_ATPase	PF02374.15	gi|384435217|ref|YP_005644575.1|	-	0.071	12.3	0.0	0.21	10.7	0.0	1.6	2	0	0	2	2	2	0	Anion-transporting	ATPase
KAP_NTPase	PF07693.14	gi|384435217|ref|YP_005644575.1|	-	0.072	12.3	0.0	0.085	12.1	0.0	1.2	1	1	0	1	1	1	0	KAP	family	P-loop	domain
RNA_helicase	PF00910.22	gi|384435217|ref|YP_005644575.1|	-	0.076	13.4	0.0	0.27	11.7	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
AAA_11	PF13086.6	gi|384435217|ref|YP_005644575.1|	-	0.086	12.6	0.0	0.12	12.1	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
Sigma54_activat	PF00158.26	gi|384435217|ref|YP_005644575.1|	-	0.11	12.2	0.0	0.9	9.2	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Roc	PF08477.13	gi|384435217|ref|YP_005644575.1|	-	0.14	12.4	0.0	0.23	11.7	0.0	1.5	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Ras	PF00071.22	gi|384435217|ref|YP_005644575.1|	-	0.14	11.7	0.0	0.24	11.0	0.0	1.3	1	0	0	1	1	1	0	Ras	family
AAA_29	PF13555.6	gi|384435217|ref|YP_005644575.1|	-	0.16	11.7	0.0	0.3	10.9	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|384435217|ref|YP_005644575.1|	-	0.27	11.7	1.3	0.53	10.7	1.3	1.6	1	1	0	1	1	1	0	AAA	domain
NAD_synthase	PF02540.17	gi|384435218|ref|YP_005644576.1|	-	3.6e-72	242.4	0.0	4.2e-72	242.2	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|384435218|ref|YP_005644576.1|	-	4.9e-05	22.3	0.0	0.0033	16.3	0.0	2.4	2	0	0	2	2	2	2	tRNA	methyl	transferase
Sigma70_r4	PF04545.16	gi|384435218|ref|YP_005644576.1|	-	0.15	11.6	0.1	0.53	9.8	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
CN_hydrolase	PF00795.22	gi|384435219|ref|YP_005644577.1|	-	4.8e-22	78.6	0.0	5.6e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
DUF1298	PF06974.13	gi|384435219|ref|YP_005644577.1|	-	0.18	11.8	0.0	0.39	10.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1298)
Herpes_LMP1	PF05297.11	gi|384435220|ref|YP_005644578.1|	-	4.1	6.5	13.2	5.4	6.1	13.2	1.2	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
HTH_5	PF01022.20	gi|384435221|ref|YP_005644579.1|	-	4.1e-13	49.0	0.0	6.4e-13	48.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|384435221|ref|YP_005644579.1|	-	7.4e-09	35.5	0.0	9.9e-09	35.1	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|384435221|ref|YP_005644579.1|	-	2.5e-07	30.5	0.2	3.4e-07	30.1	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|384435221|ref|YP_005644579.1|	-	8.2e-07	28.5	0.1	2.6e-06	26.9	0.1	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|384435221|ref|YP_005644579.1|	-	2.5e-05	24.1	0.0	3.5e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_45	PF14947.6	gi|384435221|ref|YP_005644579.1|	-	0.00015	21.7	2.5	0.00059	19.8	2.5	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix
Penicillinase_R	PF03965.16	gi|384435221|ref|YP_005644579.1|	-	0.00039	20.8	0.3	0.00083	19.7	0.3	1.7	1	1	0	1	1	1	1	Penicillinase	repressor
ArsR	PF09824.9	gi|384435221|ref|YP_005644579.1|	-	0.00055	19.6	0.5	0.00065	19.3	0.5	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
MarR	PF01047.22	gi|384435221|ref|YP_005644579.1|	-	0.0011	18.9	0.0	0.0017	18.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Phage_rep_org_N	PF09681.10	gi|384435221|ref|YP_005644579.1|	-	0.0014	18.5	0.3	0.0016	18.3	0.3	1.2	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
MarR_2	PF12802.7	gi|384435221|ref|YP_005644579.1|	-	0.002	18.0	0.0	0.0027	17.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_12	PF08461.10	gi|384435221|ref|YP_005644579.1|	-	0.0041	17.1	0.3	0.01	15.8	0.1	2.0	1	1	1	2	2	2	1	Ribonuclease	R	winged-helix	domain
DUF2513	PF10711.9	gi|384435221|ref|YP_005644579.1|	-	0.0041	17.4	0.2	0.006	16.9	0.2	1.3	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
DUF4364	PF14277.6	gi|384435221|ref|YP_005644579.1|	-	0.011	15.5	1.7	0.02	14.6	1.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
LexA_DNA_bind	PF01726.16	gi|384435221|ref|YP_005644579.1|	-	0.012	15.4	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF2089	PF09862.9	gi|384435221|ref|YP_005644579.1|	-	0.012	15.7	0.8	0.057	13.5	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2089)
HTH_IclR	PF09339.10	gi|384435221|ref|YP_005644579.1|	-	0.014	15.2	0.0	0.021	14.6	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_10	PF04967.12	gi|384435221|ref|YP_005644579.1|	-	0.015	15.1	0.0	0.028	14.2	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.19	gi|384435221|ref|YP_005644579.1|	-	0.021	15.0	0.5	0.038	14.2	0.0	1.7	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4393	PF14337.6	gi|384435221|ref|YP_005644579.1|	-	0.034	14.0	1.1	0.039	13.7	1.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4393)
TFIIE_alpha	PF02002.17	gi|384435221|ref|YP_005644579.1|	-	0.04	13.8	2.0	0.046	13.6	2.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
DUF4423	PF14394.6	gi|384435221|ref|YP_005644579.1|	-	0.044	13.5	0.1	0.051	13.3	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Dimerisation2	PF16864.5	gi|384435221|ref|YP_005644579.1|	-	0.054	13.5	0.0	0.071	13.1	0.0	1.1	1	0	0	1	1	1	0	Dimerisation	domain
HTH_34	PF13601.6	gi|384435221|ref|YP_005644579.1|	-	0.058	13.6	0.2	0.071	13.3	0.2	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|384435221|ref|YP_005644579.1|	-	0.062	13.1	0.0	0.098	12.5	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_28	PF13518.6	gi|384435221|ref|YP_005644579.1|	-	0.082	13.0	0.0	0.16	12.1	0.0	1.5	2	0	0	2	2	1	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|384435221|ref|YP_005644579.1|	-	0.094	12.4	0.1	0.61	9.8	0.1	2.0	1	1	0	1	1	1	0	Sigma-70,	region	4
GerE	PF00196.19	gi|384435221|ref|YP_005644579.1|	-	0.12	12.0	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_35	PF13693.6	gi|384435221|ref|YP_005644579.1|	-	0.13	12.3	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|384435221|ref|YP_005644579.1|	-	0.14	12.7	0.0	0.18	12.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Lys_export	PF03956.13	gi|384435222|ref|YP_005644580.1|	-	4.9e-44	150.1	13.7	4.9e-44	150.1	13.7	2.1	2	0	0	2	2	2	2	Lysine	exporter	LysO
Per1	PF04080.13	gi|384435222|ref|YP_005644580.1|	-	0.00059	19.7	1.7	0.00059	19.7	1.7	1.8	1	1	1	2	2	2	1	Per1-like	family
TNFR_16_TM	PF18422.1	gi|384435222|ref|YP_005644580.1|	-	0.033	14.1	0.7	0.033	14.1	0.7	3.5	3	0	0	3	3	3	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
AGTRAP	PF06396.11	gi|384435222|ref|YP_005644580.1|	-	1.6	8.5	8.3	1	9.1	1.1	2.5	2	0	0	2	2	2	0	Angiotensin	II,	type	I	receptor-associated	protein	(AGTRAP)
Methyltransf_25	PF13649.6	gi|384435224|ref|YP_005644582.1|	-	3.3e-16	59.8	0.0	5.7e-16	59.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|384435224|ref|YP_005644582.1|	-	1.9e-12	47.2	0.0	2.4e-12	46.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|384435224|ref|YP_005644582.1|	-	3e-10	40.6	0.0	5.1e-10	39.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|384435224|ref|YP_005644582.1|	-	4.1e-10	39.7	0.0	2.2e-09	37.4	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|384435224|ref|YP_005644582.1|	-	2.2e-07	30.5	0.2	3.3e-07	29.9	0.2	1.3	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_12	PF08242.12	gi|384435224|ref|YP_005644582.1|	-	2.6e-07	31.3	0.0	4.4e-07	30.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|384435224|ref|YP_005644582.1|	-	7.3e-06	25.6	0.0	1.3e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
NodS	PF05401.11	gi|384435224|ref|YP_005644582.1|	-	5.7e-05	22.8	0.0	8.3e-05	22.3	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Ubie_methyltran	PF01209.18	gi|384435224|ref|YP_005644582.1|	-	0.0003	20.2	0.0	0.00043	19.7	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MethyltransfD12	PF02086.15	gi|384435224|ref|YP_005644582.1|	-	0.00037	20.3	1.9	0.00052	19.8	1.9	1.2	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
CMAS	PF02353.20	gi|384435224|ref|YP_005644582.1|	-	0.0019	17.5	0.2	0.006	15.9	0.0	1.8	2	0	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
N2227	PF07942.12	gi|384435224|ref|YP_005644582.1|	-	0.0022	17.2	1.5	0.092	11.9	0.0	2.4	2	1	0	2	2	2	1	N2227-like	protein
AdoMet_MTase	PF07757.13	gi|384435224|ref|YP_005644582.1|	-	0.0038	17.6	0.1	0.0098	16.2	0.1	1.7	1	1	0	1	1	1	1	Predicted	AdoMet-dependent	methyltransferase
Methyltransf_32	PF13679.6	gi|384435224|ref|YP_005644582.1|	-	0.0066	16.4	0.0	0.009	16.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TPMT	PF05724.11	gi|384435224|ref|YP_005644582.1|	-	0.0076	15.9	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
MetW	PF07021.12	gi|384435224|ref|YP_005644582.1|	-	0.012	15.2	0.1	0.018	14.7	0.1	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
DREV	PF05219.12	gi|384435224|ref|YP_005644582.1|	-	0.02	14.0	0.1	0.028	13.5	0.1	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
tRNA_U5-meth_tr	PF05958.11	gi|384435224|ref|YP_005644582.1|	-	0.025	13.6	0.0	0.042	12.8	0.0	1.4	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_18	PF12847.7	gi|384435224|ref|YP_005644582.1|	-	0.028	14.4	0.0	0.049	13.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|384435224|ref|YP_005644582.1|	-	0.028	13.8	0.0	0.043	13.2	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.20	gi|384435224|ref|YP_005644582.1|	-	0.045	12.8	0.1	0.33	10.0	0.0	2.0	2	0	0	2	2	2	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_15	PF09445.10	gi|384435224|ref|YP_005644582.1|	-	0.055	13.0	0.0	0.096	12.3	0.0	1.4	1	1	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Mur_ligase	PF01225.25	gi|384435224|ref|YP_005644582.1|	-	0.11	12.8	0.0	0.2	12.0	0.0	1.4	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
Semialdhyde_dh	PF01118.24	gi|384435225|ref|YP_005644583.1|	-	1.3e-31	109.6	0.0	2.5e-31	108.6	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|384435225|ref|YP_005644583.1|	-	8.8e-22	78.1	0.0	1.2e-21	77.6	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
His_Phos_1	PF00300.22	gi|384435227|ref|YP_005644585.1|	-	0.054	13.2	0.0	0.071	12.8	0.0	1.1	1	0	0	1	1	1	0	Histidine	phosphatase	superfamily	(branch	1)
Tnp_22_trimer	PF17489.2	gi|384435227|ref|YP_005644585.1|	-	2.7	8.0	7.2	0.53	10.3	0.9	2.6	3	0	0	3	3	3	0	L1	transposable	element	trimerization	domain
Pro-kuma_activ	PF09286.11	gi|384435228|ref|YP_005644586.1|	-	9.3e-10	39.0	1.5	1.3e-09	38.4	0.1	2.0	2	1	0	2	2	2	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.22	gi|384435228|ref|YP_005644586.1|	-	0.062	12.5	0.1	0.062	12.5	0.1	1.9	2	0	0	2	2	2	0	Subtilase	family
DUF3869	PF12985.7	gi|384435228|ref|YP_005644586.1|	-	1.1	9.6	8.2	0.34	11.3	0.3	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3869)
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_solfataricus_98_2_uid167998/NC_017274.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_solfataricus_98_2_uid167998/NC_017274.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_solfataricus_98_2_uid167998/NC_017274.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_solfataricus_98_2_uid167998/NC_017274.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:13:39 2019
# [ok]