# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|449066048|ref|YP_007433130.1| - 1.2e-13 50.9 0.0 2.4e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|449066048|ref|YP_007433130.1| - 2.3e-09 37.6 0.0 7.5e-09 36.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|449066048|ref|YP_007433130.1| - 1.3e-05 25.6 0.0 4.1e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|449066048|ref|YP_007433130.1| - 0.0028 16.9 0.0 0.0049 16.1 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|449066048|ref|YP_007433130.1| - 0.0083 16.5 0.0 0.027 14.9 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain DUF2075 PF09848.9 gi|449066048|ref|YP_007433130.1| - 0.011 15.0 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|449066048|ref|YP_007433130.1| - 0.012 15.4 0.0 0.036 13.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|449066048|ref|YP_007433130.1| - 0.033 14.5 0.1 0.11 12.9 0.1 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|449066048|ref|YP_007433130.1| - 0.035 13.6 0.1 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region Microtub_bd PF16796.5 gi|449066048|ref|YP_007433130.1| - 0.093 12.7 0.3 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 Microtubule binding ResIII PF04851.15 gi|449066048|ref|YP_007433130.1| - 0.1 12.6 0.0 0.37 10.8 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|449066048|ref|YP_007433130.1| - 0.11 12.2 0.0 6.9 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein bMG6 PF17962.1 gi|449066049|ref|YP_007433131.1| - 0.015 15.5 0.1 0.02 15.1 0.1 1.1 1 0 0 1 1 1 0 Bacterial macroglobulin domain 6 MerR-DNA-bind PF09278.11 gi|449066049|ref|YP_007433131.1| - 0.038 14.5 1.1 0.15 12.6 0.1 2.2 2 1 0 2 2 2 0 MerR, DNA binding Nas2_N PF18265.1 gi|449066049|ref|YP_007433131.1| - 0.046 13.6 2.2 0.27 11.2 0.1 2.2 2 0 0 2 2 2 0 Nas2 N_terminal domain NPV_P10 PF05531.12 gi|449066049|ref|YP_007433131.1| - 0.08 13.4 1.5 0.93 10.0 0.3 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein TM_helix PF05552.12 gi|449066050|ref|YP_007433132.1| - 1.5e-12 47.3 14.4 2.8e-10 40.0 4.8 5.0 5 1 0 5 5 5 2 Conserved TM helix HTH_5 PF01022.20 gi|449066053|ref|YP_007433135.1| - 1.3e-13 50.6 0.0 1.8e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|449066053|ref|YP_007433135.1| - 2.6e-10 40.2 0.0 3.5e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|449066053|ref|YP_007433135.1| - 3.6e-08 33.2 0.3 5e-08 32.7 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449066053|ref|YP_007433135.1| - 1.2e-05 24.8 0.0 3.5e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|449066053|ref|YP_007433135.1| - 2.2e-05 24.3 0.1 3.1e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|449066053|ref|YP_007433135.1| - 6.4e-05 22.9 0.4 8.6e-05 22.5 0.4 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Penicillinase_R PF03965.16 gi|449066053|ref|YP_007433135.1| - 0.00058 20.2 0.2 0.00088 19.6 0.2 1.3 1 1 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|449066053|ref|YP_007433135.1| - 0.00058 19.6 0.0 0.0008 19.2 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.10 gi|449066053|ref|YP_007433135.1| - 0.0012 18.8 0.1 0.0017 18.2 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|449066053|ref|YP_007433135.1| - 0.0033 17.3 0.0 0.0045 16.8 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|449066053|ref|YP_007433135.1| - 0.004 17.3 0.2 0.0049 17.0 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.10 gi|449066053|ref|YP_007433135.1| - 0.0048 16.8 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2513 PF10711.9 gi|449066053|ref|YP_007433135.1| - 0.0074 16.6 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) DUF4423 PF14394.6 gi|449066053|ref|YP_007433135.1| - 0.01 15.5 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|449066053|ref|YP_007433135.1| - 0.011 15.6 0.1 0.011 15.6 0.1 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit ArsR PF09824.9 gi|449066053|ref|YP_007433135.1| - 0.016 14.8 0.2 0.018 14.7 0.2 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Sigma70_r4_2 PF08281.12 gi|449066053|ref|YP_007433135.1| - 0.027 14.1 0.1 0.14 11.8 0.1 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|449066053|ref|YP_007433135.1| - 0.03 14.5 0.1 0.039 14.1 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|449066053|ref|YP_007433135.1| - 0.064 13.2 0.0 0.084 12.8 0.0 1.2 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|449066053|ref|YP_007433135.1| - 0.067 13.2 0.1 0.34 10.9 0.1 1.9 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|449066053|ref|YP_007433135.1| - 0.078 13.5 0.1 0.11 13.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|449066053|ref|YP_007433135.1| - 0.087 12.6 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.20 gi|449066053|ref|YP_007433135.1| - 0.095 13.1 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator MazG-like PF12643.7 gi|449066053|ref|YP_007433135.1| - 0.1 12.9 0.1 0.12 12.7 0.1 1.1 1 0 0 1 1 1 0 MazG-like family FaeA PF04703.12 gi|449066053|ref|YP_007433135.1| - 0.15 12.5 0.1 0.18 12.2 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein DUF742 PF05331.11 gi|449066053|ref|YP_007433135.1| - 0.2 11.5 0.0 0.22 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) CN_hydrolase PF00795.22 gi|449066055|ref|YP_007433137.1| - 7.5e-26 91.0 0.0 9.6e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase NAD_synthase PF02540.17 gi|449066056|ref|YP_007433138.1| - 7.6e-76 254.4 0.0 8.7e-76 254.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|449066056|ref|YP_007433138.1| - 0.00023 20.1 0.0 0.0072 15.2 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ThiI PF02568.14 gi|449066056|ref|YP_007433138.1| - 0.0025 17.5 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Sigma70_r4 PF04545.16 gi|449066056|ref|YP_007433138.1| - 0.032 13.8 0.2 0.13 11.8 0.1 2.0 3 0 0 3 3 3 0 Sigma-70, region 4 Asn_synthase PF00733.21 gi|449066056|ref|YP_007433138.1| - 0.034 13.8 0.0 0.037 13.7 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|449066056|ref|YP_007433138.1| - 0.094 12.2 0.0 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC NTPase_1 PF03266.15 gi|449066058|ref|YP_007433140.1| - 1.5e-50 171.4 0.1 1.8e-50 171.1 0.1 1.0 1 0 0 1 1 1 1 NTPase Pox_A32 PF04665.12 gi|449066058|ref|YP_007433140.1| - 5.2e-05 22.8 0.2 0.002 17.6 0.2 2.2 1 1 0 1 1 1 1 Poxvirus A32 protein AAA PF00004.29 gi|449066058|ref|YP_007433140.1| - 0.00017 22.0 0.0 0.00026 21.4 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|449066058|ref|YP_007433140.1| - 0.00079 19.2 0.7 0.0059 16.4 0.2 2.1 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|449066058|ref|YP_007433140.1| - 0.0016 18.3 0.1 0.0034 17.3 0.1 1.7 1 1 0 1 1 1 1 NACHT domain CbiA PF01656.23 gi|449066058|ref|YP_007433140.1| - 0.0021 18.1 0.0 0.0038 17.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.6 gi|449066058|ref|YP_007433140.1| - 0.0021 18.5 0.0 0.003 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|449066058|ref|YP_007433140.1| - 0.0031 17.3 0.0 0.0049 16.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain DAP3 PF10236.9 gi|449066058|ref|YP_007433140.1| - 0.0048 16.1 0.0 0.037 13.2 0.0 1.9 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 AAA_22 PF13401.6 gi|449066058|ref|YP_007433140.1| - 0.0063 16.8 0.1 0.024 14.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|449066058|ref|YP_007433140.1| - 0.018 15.0 0.5 0.044 13.7 0.4 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|449066058|ref|YP_007433140.1| - 0.019 15.0 0.6 0.45 10.6 0.6 2.2 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|449066058|ref|YP_007433140.1| - 0.023 15.2 0.1 0.047 14.2 0.0 1.6 2 0 0 2 2 1 0 ABC transporter AAA_19 PF13245.6 gi|449066058|ref|YP_007433140.1| - 0.024 15.0 0.0 0.19 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|449066058|ref|YP_007433140.1| - 0.024 14.5 0.2 0.064 13.1 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|449066058|ref|YP_007433140.1| - 0.025 15.0 0.0 0.092 13.1 0.0 1.9 2 0 0 2 2 2 0 RNA helicase DUF2478 PF10649.9 gi|449066058|ref|YP_007433140.1| - 0.03 13.9 0.0 0.072 12.7 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) APS_kinase PF01583.20 gi|449066058|ref|YP_007433140.1| - 0.036 14.0 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|449066058|ref|YP_007433140.1| - 0.037 13.2 0.0 0.069 12.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|449066058|ref|YP_007433140.1| - 0.037 14.6 0.2 0.049 14.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|449066058|ref|YP_007433140.1| - 0.052 13.8 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|449066058|ref|YP_007433140.1| - 0.077 12.7 0.0 0.32 10.6 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase cobW PF02492.19 gi|449066058|ref|YP_007433140.1| - 0.084 12.5 0.1 0.096 12.3 0.1 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|449066058|ref|YP_007433140.1| - 0.1 12.3 0.0 6.7 6.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|449066058|ref|YP_007433140.1| - 0.12 12.5 0.0 2.8 8.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Ploopntkinase3 PF18751.1 gi|449066058|ref|YP_007433140.1| - 0.19 11.6 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 Chlor_dismutase PF06778.12 gi|449066059|ref|YP_007433141.1| - 4.6e-47 160.1 0.1 8.2e-47 159.3 0.0 1.4 1 1 1 2 2 2 1 Chlorite dismutase Darcynin PF17074.5 gi|449066059|ref|YP_007433141.1| - 0.0031 17.7 0.1 0.012 15.8 0.0 1.8 2 0 0 2 2 2 1 Darcynin, domain of unknown function Aldedh PF00171.22 gi|449066059|ref|YP_007433141.1| - 0.13 10.8 0.2 1.8 6.9 0.2 2.0 2 0 0 2 2 2 0 Aldehyde dehydrogenase family NUDIX PF00293.28 gi|449066060|ref|YP_007433142.1| - 1.5e-14 54.2 0.1 2e-14 53.8 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain SNARE_assoc PF09335.11 gi|449066061|ref|YP_007433143.1| - 2.7e-06 27.8 2.9 2.7e-06 27.8 2.9 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein AP_endonuc_2 PF01261.24 gi|449066062|ref|YP_007433144.1| - 1.4e-26 93.2 0.0 1.9e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|449066062|ref|YP_007433144.1| - 0.00018 20.9 0.0 0.00026 20.3 0.0 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF3973 PF13119.6 gi|449066062|ref|YP_007433144.1| - 0.014 15.5 0.4 0.033 14.3 0.4 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3973) Hydrolase_3 PF08282.12 gi|449066063|ref|YP_007433145.1| - 6.3e-26 91.6 0.2 6.7e-17 62.1 0.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|449066063|ref|YP_007433145.1| - 2.8e-09 36.9 0.0 2.7e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|449066063|ref|YP_007433145.1| - 1.7e-06 27.3 0.0 0.028 13.6 0.0 2.3 1 1 1 2 2 2 2 Trehalose-phosphatase DUF4832 PF16116.5 gi|449066063|ref|YP_007433145.1| - 0.00048 20.0 0.0 0.00065 19.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4832) HAD PF12710.7 gi|449066063|ref|YP_007433145.1| - 0.0022 18.4 0.0 0.049 14.0 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449066063|ref|YP_007433145.1| - 0.0061 16.9 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF934 PF06073.12 gi|449066063|ref|YP_007433145.1| - 0.026 14.4 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF934) UPF0020 PF01170.18 gi|449066064|ref|YP_007433146.1| - 0.015 15.0 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|449066064|ref|YP_007433146.1| - 0.037 13.6 0.0 0.055 13.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|449066064|ref|YP_007433146.1| - 0.043 13.6 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HAD_2 PF13419.6 gi|449066065|ref|YP_007433147.1| - 1.6e-12 47.9 0.0 2e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449066065|ref|YP_007433147.1| - 1.6e-11 44.9 0.0 4.5e-11 43.4 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|449066065|ref|YP_007433147.1| - 5.1e-06 26.5 0.0 1.5e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|449066065|ref|YP_007433147.1| - 0.069 13.5 0.0 0.11 12.9 0.0 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Zn-ribbon_8 PF09723.10 gi|449066066|ref|YP_007433148.1| - 0.00025 21.1 1.4 0.0005 20.1 1.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|449066066|ref|YP_007433148.1| - 0.00052 20.0 0.5 0.00082 19.3 0.5 1.3 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HypA PF01155.19 gi|449066066|ref|YP_007433148.1| - 0.0011 19.0 1.0 0.0014 18.7 1.1 1.3 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|449066066|ref|YP_007433148.1| - 0.0048 15.7 0.4 0.0054 15.6 0.4 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ADK_lid PF05191.14 gi|449066066|ref|YP_007433148.1| - 0.021 14.8 4.4 0.021 14.8 4.4 1.7 2 0 0 2 2 2 0 Adenylate kinase, active site lid Sigma70_r4 PF04545.16 gi|449066066|ref|YP_007433148.1| - 0.022 14.3 0.1 0.033 13.7 0.1 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1451 PF07295.11 gi|449066066|ref|YP_007433148.1| - 0.037 14.1 1.5 0.037 14.1 1.5 1.4 2 0 0 2 2 2 0 Zinc-ribbon containing domain z-alpha PF02295.17 gi|449066066|ref|YP_007433148.1| - 0.047 13.7 1.0 0.078 13.0 1.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain TF_Zn_Ribbon PF08271.12 gi|449066066|ref|YP_007433148.1| - 0.052 13.1 4.2 0.53 9.8 1.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding HTH_11 PF08279.12 gi|449066066|ref|YP_007433148.1| - 0.079 12.9 0.2 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|449066066|ref|YP_007433148.1| - 0.09 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family UPF0547 PF10571.9 gi|449066066|ref|YP_007433148.1| - 0.097 12.8 5.9 0.98 9.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|449066066|ref|YP_007433148.1| - 0.16 12.0 7.9 0.29 11.1 1.9 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon eIF-5_eIF-2B PF01873.17 gi|449066066|ref|YP_007433148.1| - 0.19 11.6 0.1 0.19 11.6 0.1 2.3 1 1 1 2 2 2 0 Domain found in IF2B/IF5 DUF35_N PF12172.8 gi|449066066|ref|YP_007433148.1| - 0.24 11.3 0.7 20 5.1 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HalOD2 PF18547.1 gi|449066066|ref|YP_007433148.1| - 0.24 11.3 1.2 14 5.6 0.0 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 FUR PF01475.19 gi|449066066|ref|YP_007433148.1| - 0.27 11.4 2.7 3.2 7.9 0.3 2.1 1 1 0 2 2 2 0 Ferric uptake regulator family TFIIS_C PF01096.18 gi|449066066|ref|YP_007433148.1| - 0.59 10.0 3.5 15 5.6 0.6 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|449066066|ref|YP_007433148.1| - 0.75 9.3 7.3 3.4 7.2 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|449066066|ref|YP_007433148.1| - 2.9 7.7 8.1 2.7 7.8 0.7 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-H2C2_2 PF13465.6 gi|449066066|ref|YP_007433148.1| - 3.2 8.3 6.5 5.7 7.6 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger double domain DUF4268 PF14088.6 gi|449066068|ref|YP_007433150.1| - 0.0076 16.1 2.5 0.009 15.9 2.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4268) Viral_alk_exo PF01771.17 gi|449066068|ref|YP_007433150.1| - 0.084 11.7 0.0 0.09 11.6 0.0 1.1 1 0 0 1 1 1 0 Viral alkaline exonuclease NadA PF02445.16 gi|449066069|ref|YP_007433151.1| - 4.6e-90 301.8 0.0 5.2e-90 301.6 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Aminotran_5 PF00266.19 gi|449066070|ref|YP_007433152.1| - 3.2e-42 144.8 0.0 5.9e-42 143.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|449066070|ref|YP_007433152.1| - 0.00024 19.8 0.2 0.00037 19.1 0.2 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|449066070|ref|YP_007433152.1| - 0.063 12.4 0.3 3.1 6.9 0.1 2.1 2 0 0 2 2 2 0 Aminotransferase class I and II AMP-binding PF00501.28 gi|449066071|ref|YP_007433153.1| - 1.9e-67 227.8 0.0 2.4e-67 227.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449066071|ref|YP_007433153.1| - 5.2e-19 69.0 0.4 9.7e-19 68.1 0.4 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|449066071|ref|YP_007433153.1| - 5e-15 55.2 3.1 1e-14 54.2 3.1 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF211 PF02680.14 gi|449066071|ref|YP_007433153.1| - 0.13 12.5 2.1 0.33 11.1 1.5 2.0 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 PIN_6 PF17146.4 gi|449066072|ref|YP_007433154.1| - 1.7e-17 63.7 0.7 2.6e-17 63.1 0.7 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease NOB1_Zn_bind PF08772.11 gi|449066072|ref|YP_007433154.1| - 0.0071 16.5 2.8 0.017 15.3 2.8 1.6 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|449066072|ref|YP_007433154.1| - 0.056 13.2 3.5 0.085 12.6 3.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF5356 PF17309.2 gi|449066072|ref|YP_007433154.1| - 0.11 12.5 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5356) Zn-ribbon_8 PF09723.10 gi|449066072|ref|YP_007433154.1| - 0.13 12.4 3.9 0.4 10.8 3.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L44 PF00935.19 gi|449066072|ref|YP_007433154.1| - 0.16 12.5 4.5 0.29 11.6 4.2 1.6 1 1 0 1 1 1 0 Ribosomal protein L44 COMM_domain PF07258.14 gi|449066072|ref|YP_007433154.1| - 0.17 12.1 1.3 0.86 9.8 0.1 2.5 2 1 1 3 3 3 0 COMM domain C1_2 PF03107.16 gi|449066072|ref|YP_007433154.1| - 0.71 10.2 3.3 3.5 8.0 3.3 2.0 1 1 0 1 1 1 0 C1 domain DUF4379 PF14311.6 gi|449066072|ref|YP_007433154.1| - 0.95 9.9 3.1 3.7 8.0 3.1 1.9 1 1 0 1 1 1 0 Probable Zinc-ribbon domain ADK_lid PF05191.14 gi|449066072|ref|YP_007433154.1| - 2.2 8.3 4.2 4.3 7.4 4.2 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid Desulfoferrod_N PF06397.12 gi|449066072|ref|YP_007433154.1| - 8.6 6.1 10.4 3.4 7.4 2.6 2.3 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain NAD_kinase PF01513.21 gi|449066073|ref|YP_007433155.1| - 5.6e-20 71.7 0.0 1.5e-19 70.3 0.0 1.6 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|449066073|ref|YP_007433155.1| - 0.0022 17.6 0.1 0.0054 16.3 0.1 1.6 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain DUF3188 PF11384.8 gi|449066074|ref|YP_007433156.1| - 0.087 12.5 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) NPL PF17800.1 gi|449066074|ref|YP_007433156.1| - 0.12 12.9 0.1 0.25 11.9 0.1 1.5 1 1 1 2 2 2 0 Nucleoplasmin-like domain Pyr_redox_2 PF07992.14 gi|449066075|ref|YP_007433157.1| - 1.3e-30 106.6 0.7 1.7e-30 106.3 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449066075|ref|YP_007433157.1| - 2.8e-24 85.9 1.2 1.1e-20 74.2 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449066075|ref|YP_007433157.1| - 1.2e-14 54.6 0.1 3.3e-11 43.6 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|449066075|ref|YP_007433157.1| - 5.1e-10 39.0 0.1 1.2e-07 31.2 0.0 2.9 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|449066075|ref|YP_007433157.1| - 6.6e-07 28.4 0.2 0.00047 19.0 0.0 3.5 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|449066075|ref|YP_007433157.1| - 1.1e-06 28.7 0.2 4.2e-05 23.7 0.2 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|449066075|ref|YP_007433157.1| - 3.5e-05 23.2 1.9 0.011 15.0 0.1 2.8 3 0 0 3 3 3 2 Thi4 family DAO PF01266.24 gi|449066075|ref|YP_007433157.1| - 5.9e-05 22.8 2.5 0.036 13.6 0.3 3.8 2 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|449066075|ref|YP_007433157.1| - 0.00013 22.4 0.1 0.0033 17.8 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FMO-like PF00743.19 gi|449066075|ref|YP_007433157.1| - 0.00041 18.9 0.2 0.0018 16.8 0.0 1.9 1 1 1 2 2 2 1 Flavin-binding monooxygenase-like FAD_oxidored PF12831.7 gi|449066075|ref|YP_007433157.1| - 0.00057 19.4 1.8 0.0034 16.8 0.0 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|449066075|ref|YP_007433157.1| - 0.032 13.5 0.4 5.6 6.1 0.0 2.9 2 1 1 3 3 3 0 FAD binding domain Spermine_synth PF01564.17 gi|449066075|ref|YP_007433157.1| - 0.036 13.5 0.2 0.27 10.6 0.1 2.1 2 0 0 2 2 2 0 Spermine/spermidine synthase domain DUF4367 PF14285.6 gi|449066075|ref|YP_007433157.1| - 0.044 14.2 0.3 0.21 12.0 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4367) DUF2103 PF09876.9 gi|449066075|ref|YP_007433157.1| - 0.058 13.4 0.2 0.17 11.9 0.0 1.8 2 0 0 2 2 1 0 Predicted metal-binding protein (DUF2103) FAD_binding_2 PF00890.24 gi|449066075|ref|YP_007433157.1| - 0.06 12.4 3.5 0.66 9.0 0.1 3.0 2 1 1 3 3 3 0 FAD binding domain NAD_binding_9 PF13454.6 gi|449066075|ref|YP_007433157.1| - 0.3 11.0 1.7 29 4.6 0.1 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding Met_10 PF02475.16 gi|449066076|ref|YP_007433158.1| - 1.1e-30 106.9 0.5 1.5e-30 106.4 0.5 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|449066076|ref|YP_007433158.1| - 4.6e-07 30.5 0.0 8.5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|449066076|ref|YP_007433158.1| - 1.4e-06 28.0 0.1 2.2e-05 24.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|449066076|ref|YP_007433158.1| - 8.6e-06 26.3 0.0 1.9e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449066076|ref|YP_007433158.1| - 0.00062 19.2 0.0 0.00081 18.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|449066076|ref|YP_007433158.1| - 0.0023 17.6 0.1 0.048 13.3 0.0 2.3 2 1 0 2 2 2 1 Conserved hypothetical protein 95 Trm5_N PF18093.1 gi|449066076|ref|YP_007433158.1| - 0.0095 15.8 4.4 0.042 13.7 2.2 2.8 2 1 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain POTRA_1 PF08478.10 gi|449066076|ref|YP_007433158.1| - 0.023 15.0 0.1 0.059 13.7 0.1 1.7 1 0 0 1 1 1 0 POTRA domain, FtsQ-type Sulf_coat_C PF12193.8 gi|449066076|ref|YP_007433158.1| - 0.083 13.0 0.0 3.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Sulfolobus virus coat protein C terminal Methyltransf_31 PF13847.6 gi|449066076|ref|YP_007433158.1| - 0.13 12.1 0.1 0.39 10.5 0.1 1.7 2 0 0 2 2 2 0 Methyltransferase domain DUF371 PF04027.13 gi|449066077|ref|YP_007433159.1| - 1.5e-51 173.9 0.8 1.8e-51 173.6 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) SKI PF01202.22 gi|449066077|ref|YP_007433159.1| - 0.06 13.5 0.0 0.083 13.0 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase MEF2_binding PF09047.10 gi|449066077|ref|YP_007433159.1| - 0.1 12.5 0.2 0.22 11.4 0.2 1.6 1 0 0 1 1 1 0 MEF2 binding CRS1_YhbY PF01985.21 gi|449066078|ref|YP_007433160.1| - 8.8e-15 54.6 1.1 1e-14 54.4 1.1 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.16 gi|449066079|ref|YP_007433161.1| - 5.4e-10 39.4 0.4 8.2e-10 38.8 0.4 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Ribosomal_L40e PF01020.17 gi|449066079|ref|YP_007433161.1| - 0.42 10.5 4.2 0.22 11.4 1.6 1.9 1 1 1 2 2 2 0 Ribosomal L40e family EMG1 PF03587.14 gi|449066080|ref|YP_007433162.1| - 3e-43 147.8 0.1 3.4e-43 147.6 0.1 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase RHH_5 PF07878.11 gi|449066081|ref|YP_007433163.1| - 0.02 14.8 0.0 0.053 13.4 0.0 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_1 PF01402.21 gi|449066081|ref|YP_007433163.1| - 0.19 11.7 0.1 0.19 11.7 0.1 2.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family YppF PF14178.6 gi|449066081|ref|YP_007433163.1| - 0.2 11.5 1.1 18 5.3 0.1 3.0 3 0 0 3 3 3 0 YppF-like protein Amidinotransf PF02274.17 gi|449066082|ref|YP_007433164.1| - 0.12 11.5 0.1 1.8 7.6 0.1 2.2 2 1 0 2 2 2 0 Amidinotransferase VitK2_biosynth PF02621.14 gi|449066083|ref|YP_007433165.1| - 5.4e-64 216.3 0.0 6.1e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis NTPase_I-T PF01931.18 gi|449066084|ref|YP_007433166.1| - 3.6e-47 160.2 0.0 4e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Thioredoxin PF00085.20 gi|449066086|ref|YP_007433168.1| - 1.2e-28 99.1 0.0 1.4e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|449066086|ref|YP_007433168.1| - 2.5e-09 37.6 0.1 2.2e-07 31.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|449066086|ref|YP_007433168.1| - 3.6e-06 26.6 0.1 5.6e-06 25.9 0.1 1.3 1 1 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|449066086|ref|YP_007433168.1| - 5.5e-06 26.6 0.1 0.073 13.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Redoxin PF08534.10 gi|449066086|ref|YP_007433168.1| - 1e-05 25.3 0.2 0.079 12.7 0.0 2.1 1 1 1 2 2 2 2 Redoxin Thioredoxin_9 PF14595.6 gi|449066086|ref|YP_007433168.1| - 0.00012 21.9 0.0 0.00013 21.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|449066086|ref|YP_007433168.1| - 0.00016 21.6 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Phosducin PF02114.16 gi|449066086|ref|YP_007433168.1| - 0.00032 19.7 0.0 0.00033 19.7 0.0 1.1 1 0 0 1 1 1 1 Phosducin HyaE PF07449.11 gi|449066086|ref|YP_007433168.1| - 0.00033 20.6 0.0 0.00044 20.2 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.21 gi|449066086|ref|YP_007433168.1| - 0.00044 20.2 0.1 0.27 11.1 0.1 2.1 1 1 1 2 2 2 2 AhpC/TSA family TraF PF13728.6 gi|449066086|ref|YP_007433168.1| - 0.013 15.3 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_6 PF13848.6 gi|449066086|ref|YP_007433168.1| - 0.021 14.7 0.0 0.038 13.9 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain Calsequestrin PF01216.17 gi|449066086|ref|YP_007433168.1| - 0.023 13.7 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Calsequestrin DUF2456 PF10445.9 gi|449066086|ref|YP_007433168.1| - 0.056 13.5 0.0 0.087 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2456) DSBA PF01323.20 gi|449066086|ref|YP_007433168.1| - 0.16 11.7 0.4 0.79 9.5 0.0 1.9 1 1 1 2 2 2 0 DSBA-like thioredoxin domain tRNA_deacylase PF04414.12 gi|449066087|ref|YP_007433169.1| - 1.5e-54 184.7 0.0 1.7e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DELLA PF12041.8 gi|449066087|ref|YP_007433169.1| - 0.095 12.6 0.0 0.36 10.8 0.0 1.9 3 0 0 3 3 3 0 Transcriptional regulator DELLA protein N terminal His_Phos_1 PF00300.22 gi|449066088|ref|YP_007433170.1| - 4.2e-35 121.2 0.0 5e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) AAA_24 PF13479.6 gi|449066088|ref|YP_007433170.1| - 0.00076 19.3 0.1 0.0021 17.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain DUF1435 PF07256.12 gi|449066088|ref|YP_007433170.1| - 0.003 17.6 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1435) CBS PF00571.28 gi|449066089|ref|YP_007433171.1| - 2.3e-26 92.0 0.8 5e-12 46.1 0.1 2.2 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.16 gi|449066089|ref|YP_007433171.1| - 0.048 13.2 0.2 0.077 12.6 0.2 1.5 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding DUF1840 PF08895.11 gi|449066089|ref|YP_007433171.1| - 0.057 13.7 0.0 16 5.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) TctC PF03401.14 gi|449066089|ref|YP_007433171.1| - 0.18 10.8 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor AAA_13 PF13166.6 gi|449066091|ref|YP_007433173.1| - 0.0004 19.2 24.1 0.0004 19.2 24.1 3.4 1 1 1 3 3 3 1 AAA domain FdhE PF04216.12 gi|449066091|ref|YP_007433173.1| - 0.0012 18.8 0.7 0.0012 18.8 0.7 2.1 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation SbcCD_C PF13558.6 gi|449066091|ref|YP_007433173.1| - 0.0059 16.8 0.0 0.051 13.8 0.0 2.4 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|449066091|ref|YP_007433173.1| - 0.013 14.9 21.0 0.076 12.4 19.6 2.8 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain Mod_r PF07200.13 gi|449066091|ref|YP_007433173.1| - 0.017 15.2 16.8 0.017 15.2 16.8 4.4 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein ABC_tran_CTD PF16326.5 gi|449066091|ref|YP_007433173.1| - 0.021 15.1 54.7 0.13 12.5 9.2 6.9 2 2 6 8 8 8 0 ABC transporter C-terminal domain DUF4407 PF14362.6 gi|449066091|ref|YP_007433173.1| - 0.023 14.0 33.4 0.35 10.2 12.2 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) DNA_ligase_ZBD PF03119.16 gi|449066091|ref|YP_007433173.1| - 0.05 13.6 0.2 0.13 12.4 0.2 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain GAS PF13851.6 gi|449066091|ref|YP_007433173.1| - 0.086 12.2 59.9 1.2 8.4 23.0 4.1 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Prominin PF05478.11 gi|449066091|ref|YP_007433173.1| - 0.12 10.3 34.2 0.017 13.1 13.6 2.3 2 0 0 2 2 2 0 Prominin Baculo_PEP_C PF04513.12 gi|449066091|ref|YP_007433173.1| - 0.3 11.1 34.4 0.46 10.5 6.3 4.8 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|449066091|ref|YP_007433173.1| - 0.32 11.3 47.8 0.82 10.0 2.9 5.1 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 T3SSipB PF16535.5 gi|449066091|ref|YP_007433173.1| - 0.33 11.4 18.4 1.6 9.2 6.4 3.4 2 1 0 2 2 2 0 Type III cell invasion protein SipB AAA_23 PF13476.6 gi|449066091|ref|YP_007433173.1| - 0.95 9.9 76.9 2.4e+03 -1.2 0.1 4.3 1 1 1 2 2 1 0 AAA domain Spc7 PF08317.11 gi|449066091|ref|YP_007433173.1| - 1.1 8.1 62.4 0.66 8.8 25.0 3.4 2 2 1 3 3 3 0 Spc7 kinetochore protein NPV_P10 PF05531.12 gi|449066091|ref|YP_007433173.1| - 2.1 8.9 36.0 42 4.7 1.4 6.3 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Filament PF00038.21 gi|449066091|ref|YP_007433173.1| - 2.2 7.8 57.6 19 4.7 25.0 3.6 1 1 1 2 2 2 0 Intermediate filament protein DUF948 PF06103.11 gi|449066091|ref|YP_007433173.1| - 2.6 8.4 34.6 8.7 6.7 0.4 6.1 2 2 3 6 6 6 0 Bacterial protein of unknown function (DUF948) Serine_rich PF08824.10 gi|449066091|ref|YP_007433173.1| - 2.7 8.0 18.9 0.2 11.7 6.5 3.3 2 1 2 4 4 4 0 Serine rich protein interaction domain TMPIT PF07851.13 gi|449066091|ref|YP_007433173.1| - 5.2 6.2 45.1 0.073 12.3 5.7 4.3 1 1 3 4 4 4 0 TMPIT-like protein PI_PP_I PF18363.1 gi|449066091|ref|YP_007433173.1| - 9.2 6.5 22.1 2 8.6 0.8 4.7 3 2 1 4 4 4 0 Phosphoinositide phosphatase insertion domain HTH_57 PF18679.1 gi|449066091|ref|YP_007433173.1| - 9.2 6.6 15.5 11 6.3 3.8 4.4 4 1 0 4 4 4 0 ThcOx helix turn helix domain IU_nuc_hydro PF01156.19 gi|449066092|ref|YP_007433174.1| - 3.1e-73 247.0 0.0 3.6e-73 246.8 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase FERM_C PF09380.10 gi|449066092|ref|YP_007433174.1| - 0.15 12.5 0.1 0.32 11.4 0.1 1.7 1 1 0 1 1 1 0 FERM C-terminal PH-like domain FUR PF01475.19 gi|449066093|ref|YP_007433175.1| - 3.4e-21 75.6 0.1 4.1e-21 75.4 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.7 gi|449066093|ref|YP_007433175.1| - 0.001 19.1 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|449066093|ref|YP_007433175.1| - 0.0028 17.6 0.1 0.0047 16.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|449066093|ref|YP_007433175.1| - 0.0031 17.9 0.0 0.0097 16.3 0.0 1.8 1 1 1 2 2 2 1 Penicillinase repressor HTH_5 PF01022.20 gi|449066093|ref|YP_007433175.1| - 0.0046 16.8 0.0 0.09 12.7 0.0 2.4 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HxlR PF01638.17 gi|449066093|ref|YP_007433175.1| - 0.01 15.7 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.19 gi|449066093|ref|YP_007433175.1| - 0.03 14.2 0.0 0.12 12.2 0.0 2.0 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|449066093|ref|YP_007433175.1| - 0.05 13.6 0.1 0.22 11.5 0.0 2.2 2 1 0 2 2 2 0 HTH domain HTH_Tnp_Tc3_2 PF01498.18 gi|449066093|ref|YP_007433175.1| - 0.14 12.4 0.1 6 7.2 0.0 2.2 1 1 1 2 2 2 0 Transposase HTH_32 PF13565.6 gi|449066093|ref|YP_007433175.1| - 0.21 12.2 0.0 0.39 11.4 0.0 1.5 1 1 0 1 1 1 0 Homeodomain-like domain RGS-like PF09128.11 gi|449066094|ref|YP_007433176.1| - 0.017 14.9 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 Regulator of G protein signalling-like domain NurA PF09376.10 gi|449066095|ref|YP_007433177.1| - 2.9e-37 128.7 4.8 3.5e-37 128.4 4.8 1.1 1 0 0 1 1 1 1 NurA domain MetOD1 PF18546.1 gi|449066095|ref|YP_007433177.1| - 0.018 15.0 0.1 0.037 14.0 0.1 1.5 1 0 0 1 1 1 0 Metanogen output domain 1 Phage-Gp8 PF09215.10 gi|449066095|ref|YP_007433177.1| - 0.095 11.7 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T4, Gp8 SMC_N PF02463.19 gi|449066096|ref|YP_007433178.1| - 3.5e-20 72.4 13.8 1.6e-11 44.1 3.8 4.3 5 0 0 5 5 4 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|449066096|ref|YP_007433178.1| - 2.6e-19 70.5 19.7 2.6e-19 70.5 19.7 6.8 1 1 3 5 5 1 1 AAA domain AAA_15 PF13175.6 gi|449066096|ref|YP_007433178.1| - 8.7e-18 65.2 83.4 9.1e-18 65.1 21.7 3.3 1 1 1 2 2 2 1 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|449066096|ref|YP_007433178.1| - 5.9e-12 45.2 1.7 5.9e-12 45.2 1.7 10.0 14 3 0 14 14 11 1 Rad50 zinc hook motif AAA_13 PF13166.6 gi|449066096|ref|YP_007433178.1| - 1.3e-07 30.7 104.2 0.00035 19.4 22.8 5.6 2 1 2 4 4 4 3 AAA domain SbcCD_C PF13558.6 gi|449066096|ref|YP_007433178.1| - 1.4e-05 25.2 0.0 4.3e-05 23.7 0.0 1.8 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|449066096|ref|YP_007433178.1| - 1.6e-05 24.5 0.0 3.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|449066096|ref|YP_007433178.1| - 8.2e-05 22.6 1.9 8.2e-05 22.6 1.9 4.5 3 2 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|449066096|ref|YP_007433178.1| - 0.00015 22.3 2.3 0.00015 22.3 2.3 5.5 1 1 2 3 3 2 1 ABC transporter RsgA_GTPase PF03193.16 gi|449066096|ref|YP_007433178.1| - 0.0018 18.2 0.1 0.0018 18.2 0.1 4.7 3 1 2 5 5 5 1 RsgA GTPase TPR_MLP1_2 PF07926.12 gi|449066096|ref|YP_007433178.1| - 0.0086 16.1 7.2 0.0086 16.1 7.2 7.7 2 2 5 7 7 6 1 TPR/MLP1/MLP2-like protein ZapB PF06005.12 gi|449066096|ref|YP_007433178.1| - 0.016 15.6 12.7 0.016 15.6 12.7 9.8 3 2 4 7 7 3 0 Cell division protein ZapB GAS PF13851.6 gi|449066096|ref|YP_007433178.1| - 0.53 9.6 123.5 0.12 11.7 19.1 5.9 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding DUF4407 PF14362.6 gi|449066096|ref|YP_007433178.1| - 0.99 8.7 62.3 3.6 6.8 10.8 4.7 2 2 2 4 4 4 0 Domain of unknown function (DUF4407) Seryl_tRNA_N PF02403.22 gi|449066096|ref|YP_007433178.1| - 1.1 9.5 114.0 0.021 15.0 8.2 8.7 2 2 6 8 8 7 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.12 gi|449066096|ref|YP_007433178.1| - 1.2 9.6 55.0 2.3 8.8 0.4 9.4 4 2 5 10 10 9 0 Nucleopolyhedrovirus P10 protein Metallophos PF00149.28 gi|449066097|ref|YP_007433179.1| - 6.2e-14 53.0 0.4 1.1e-13 52.1 0.4 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|449066097|ref|YP_007433179.1| - 6.8e-11 42.6 0.0 1.5e-10 41.5 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ATP-cone PF03477.16 gi|449066097|ref|YP_007433179.1| - 2.3 8.9 6.7 2.4 8.8 1.6 2.8 2 1 1 3 3 3 0 ATP cone domain DUF87 PF01935.17 gi|449066098|ref|YP_007433180.1| - 1.2e-48 166.2 3.7 1.8e-48 165.6 3.7 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|449066098|ref|YP_007433180.1| - 1.3e-12 47.7 1.0 3.9e-12 46.1 0.0 2.4 3 0 0 3 3 2 1 HAS barrel domain DUF853 PF05872.12 gi|449066098|ref|YP_007433180.1| - 2.6e-12 46.1 0.0 9.3e-07 27.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|449066098|ref|YP_007433180.1| - 0.00033 19.7 0.0 0.0019 17.2 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|449066098|ref|YP_007433180.1| - 0.00056 19.3 0.1 0.029 13.7 0.0 2.4 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|449066098|ref|YP_007433180.1| - 0.0044 16.0 0.2 0.52 9.2 0.2 2.3 2 1 0 2 2 2 1 AAA-like domain DHC_N1 PF08385.12 gi|449066098|ref|YP_007433180.1| - 0.0048 15.6 1.0 0.0076 14.9 1.0 1.3 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 1 Dynamin_M PF01031.20 gi|449066098|ref|YP_007433180.1| - 0.006 15.8 1.0 0.01 15.1 1.0 1.3 1 0 0 1 1 1 1 Dynamin central region IF2_N PF04760.15 gi|449066098|ref|YP_007433180.1| - 0.0072 16.1 0.2 0.14 12.0 0.1 2.6 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region ResIII PF04851.15 gi|449066098|ref|YP_007433180.1| - 0.04 13.9 1.3 2.2 8.3 1.3 2.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|449066098|ref|YP_007433180.1| - 0.071 12.9 0.8 11 5.7 0.1 2.6 1 1 0 2 2 2 0 DEAD/DEAH box helicase DUF1848 PF08902.11 gi|449066098|ref|YP_007433180.1| - 0.11 12.2 0.3 0.2 11.4 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) ABC_tran PF00005.27 gi|449066098|ref|YP_007433180.1| - 0.13 12.8 1.6 0.28 11.7 1.6 1.6 1 1 0 1 1 1 0 ABC transporter Phyto-Amp PF15438.6 gi|449066099|ref|YP_007433181.1| - 0.0005 20.0 2.4 0.15 11.9 0.3 2.1 1 1 1 2 2 2 2 Antigenic membrane protein of phytoplasma Rubrerythrin PF02915.17 gi|449066099|ref|YP_007433181.1| - 0.0006 20.2 9.6 0.059 13.8 3.1 2.1 1 1 1 2 2 2 2 Rubrerythrin Big_2 PF02368.18 gi|449066099|ref|YP_007433181.1| - 0.0015 18.4 0.0 2.5 8.0 0.0 2.5 2 1 0 2 2 2 2 Bacterial Ig-like domain (group 2) DUF892 PF05974.12 gi|449066099|ref|YP_007433181.1| - 0.0025 17.8 8.6 0.1 12.6 1.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|449066099|ref|YP_007433181.1| - 0.0091 15.9 4.4 0.53 10.2 0.5 2.1 1 1 1 2 2 2 2 Ferritin-like domain TRCF PF03461.15 gi|449066099|ref|YP_007433181.1| - 0.01 16.2 0.7 3 8.3 0.1 2.2 1 1 0 2 2 2 0 TRCF domain DUF2024 PF09630.10 gi|449066099|ref|YP_007433181.1| - 0.1 12.5 1.4 9.7 6.1 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2024) NCD1 PF04904.13 gi|449066099|ref|YP_007433181.1| - 0.15 12.1 0.0 1.7 8.7 0.0 2.2 1 1 1 2 2 2 0 NAB conserved region 1 (NCD1) MOR2-PAG1_C PF14225.6 gi|449066099|ref|YP_007433181.1| - 0.2 11.5 1.7 9.9 5.9 0.1 2.0 1 1 1 2 2 2 0 Cell morphogenesis C-terminal CDC37_C PF08564.10 gi|449066099|ref|YP_007433181.1| - 0.26 11.4 4.1 3 8.0 0.9 2.2 1 1 2 3 3 3 0 Cdc37 C terminal domain FTR1 PF03239.14 gi|449066100|ref|YP_007433182.1| - 0.016 14.4 0.1 0.019 14.2 0.1 1.0 1 0 0 1 1 1 0 Iron permease FTR1 family FliL PF03748.14 gi|449066100|ref|YP_007433182.1| - 0.13 12.9 7.7 1.1 9.8 7.7 2.2 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL Carb_kinase PF01256.17 gi|449066101|ref|YP_007433183.1| - 1.8e-54 184.8 0.1 2.5e-54 184.4 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|449066101|ref|YP_007433183.1| - 3e-39 134.7 0.0 5.2e-39 133.9 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|449066101|ref|YP_007433183.1| - 3.7e-07 29.8 0.1 9.9e-07 28.4 0.0 1.7 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|449066101|ref|YP_007433183.1| - 0.0002 20.8 0.0 0.00037 19.9 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase KR PF08659.10 gi|449066101|ref|YP_007433183.1| - 0.029 14.3 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 KR domain AhpC-TSA PF00578.21 gi|449066102|ref|YP_007433184.1| - 1.2e-38 131.8 0.0 1.4e-38 131.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|449066102|ref|YP_007433184.1| - 2.4e-26 92.2 0.0 2.8e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|449066102|ref|YP_007433184.1| - 2e-05 24.9 0.0 2.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|449066102|ref|YP_007433184.1| - 0.007 16.5 0.0 0.0099 16.0 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|449066102|ref|YP_007433184.1| - 0.028 14.0 0.0 0.032 13.8 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Costars PF14705.6 gi|449066102|ref|YP_007433184.1| - 0.086 13.0 0.1 1 9.6 0.0 2.2 2 0 0 2 2 2 0 Costars PEPcase_2 PF14010.6 gi|449066103|ref|YP_007433185.1| - 7.1e-215 714.2 1.3 8e-215 714.0 1.3 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase DCD PF06559.11 gi|449066104|ref|YP_007433186.1| - 0.09 11.6 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) MeaB PF03308.16 gi|449066105|ref|YP_007433187.1| - 3.5e-85 285.2 0.1 4.3e-85 284.9 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|449066105|ref|YP_007433187.1| - 1.1e-07 31.7 0.6 1e-06 28.4 0.6 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|449066105|ref|YP_007433187.1| - 4.2e-05 23.8 0.0 9.7e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|449066105|ref|YP_007433187.1| - 4.6e-05 23.6 1.0 0.00016 21.8 0.1 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain MobB PF03205.14 gi|449066105|ref|YP_007433187.1| - 5.7e-05 23.0 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|449066105|ref|YP_007433187.1| - 0.00028 20.6 0.0 0.053 13.2 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|449066105|ref|YP_007433187.1| - 0.0003 20.7 0.1 0.0008 19.4 0.1 1.7 1 0 0 1 1 1 1 NTPase GTP_EFTU PF00009.27 gi|449066105|ref|YP_007433187.1| - 0.00035 20.2 0.0 0.19 11.3 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain NB-ARC PF00931.22 gi|449066105|ref|YP_007433187.1| - 0.00054 19.2 0.0 0.00097 18.4 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain KAP_NTPase PF07693.14 gi|449066105|ref|YP_007433187.1| - 0.00099 18.4 0.0 0.00099 18.4 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain TrwB_AAD_bind PF10412.9 gi|449066105|ref|YP_007433187.1| - 0.0011 17.9 0.0 0.0017 17.3 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain RsgA_GTPase PF03193.16 gi|449066105|ref|YP_007433187.1| - 0.0015 18.4 1.9 0.0067 16.3 0.1 2.5 3 0 0 3 3 3 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|449066105|ref|YP_007433187.1| - 0.0016 18.2 0.0 0.0043 16.9 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|449066105|ref|YP_007433187.1| - 0.0018 18.8 0.1 0.0044 17.5 0.1 1.6 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|449066105|ref|YP_007433187.1| - 0.0019 18.6 0.1 0.0054 17.1 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|449066105|ref|YP_007433187.1| - 0.0019 18.7 0.2 0.0064 17.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|449066105|ref|YP_007433187.1| - 0.0029 17.4 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|449066105|ref|YP_007433187.1| - 0.0036 17.0 0.2 0.034 13.9 0.4 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|449066105|ref|YP_007433187.1| - 0.0041 17.5 0.1 0.02 15.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|449066105|ref|YP_007433187.1| - 0.0044 16.4 0.0 0.008 15.5 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|449066105|ref|YP_007433187.1| - 0.0071 16.4 0.2 0.023 14.8 0.2 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|449066105|ref|YP_007433187.1| - 0.0092 15.3 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Viral_helicase1 PF01443.18 gi|449066105|ref|YP_007433187.1| - 0.011 15.5 0.1 0.02 14.7 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|449066105|ref|YP_007433187.1| - 0.014 15.5 0.0 0.022 14.8 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF815 PF05673.13 gi|449066105|ref|YP_007433187.1| - 0.016 14.4 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|449066105|ref|YP_007433187.1| - 0.017 15.5 0.0 0.039 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MipZ PF09140.11 gi|449066105|ref|YP_007433187.1| - 0.022 14.1 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.6 gi|449066105|ref|YP_007433187.1| - 0.031 13.9 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|449066105|ref|YP_007433187.1| - 0.036 12.9 0.1 0.056 12.2 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_28 PF13521.6 gi|449066105|ref|YP_007433187.1| - 0.038 14.2 0.1 0.076 13.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|449066105|ref|YP_007433187.1| - 0.039 13.2 0.0 0.067 12.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|449066105|ref|YP_007433187.1| - 0.042 13.8 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Ploopntkinase3 PF18751.1 gi|449066105|ref|YP_007433187.1| - 0.045 13.7 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 PRK PF00485.18 gi|449066105|ref|YP_007433187.1| - 0.046 13.5 0.1 0.079 12.7 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|449066105|ref|YP_007433187.1| - 0.073 13.1 0.3 0.18 11.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain T2SSE PF00437.20 gi|449066105|ref|YP_007433187.1| - 0.098 11.7 0.5 0.2 10.6 0.1 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|449066105|ref|YP_007433187.1| - 0.11 12.6 0.1 0.22 11.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|449066105|ref|YP_007433187.1| - 0.18 11.2 1.1 0.37 10.2 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 B12-binding PF02310.19 gi|449066106|ref|YP_007433188.1| - 1.2e-22 80.1 0.5 1.6e-22 79.8 0.5 1.1 1 0 0 1 1 1 1 B12 binding domain IMPDH PF00478.25 gi|449066106|ref|YP_007433188.1| - 0.0017 17.5 0.3 0.002 17.2 0.3 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain TPP_enzyme_N PF02776.18 gi|449066106|ref|YP_007433188.1| - 0.018 14.7 0.0 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Nitro_FeMo-Co PF02579.17 gi|449066106|ref|YP_007433188.1| - 0.17 12.2 0.6 36 4.8 0.0 2.7 1 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor 7kD_DNA_binding PF02294.18 gi|449066107|ref|YP_007433189.1| - 6e-41 138.3 4.2 6.8e-41 138.1 4.2 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain HTH_38 PF13936.6 gi|449066108|ref|YP_007433190.1| - 0.0015 18.3 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|449066108|ref|YP_007433190.1| - 0.0052 16.4 0.1 0.0096 15.6 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|449066108|ref|YP_007433190.1| - 0.0069 15.9 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Trp_repressor PF01371.19 gi|449066108|ref|YP_007433190.1| - 0.0079 16.3 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Trp repressor protein HTH_23 PF13384.6 gi|449066108|ref|YP_007433190.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Terminase_5 PF06056.12 gi|449066108|ref|YP_007433190.1| - 0.02 14.7 0.1 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_3 PF01381.22 gi|449066108|ref|YP_007433190.1| - 0.023 14.7 0.1 0.037 14.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix GerE PF00196.19 gi|449066108|ref|YP_007433190.1| - 0.049 13.2 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_28 PF13518.6 gi|449066108|ref|YP_007433190.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA-synt_2 PF00152.20 gi|449066109|ref|YP_007433191.1| - 4.3e-80 269.1 0.2 5.4e-80 268.8 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|449066109|ref|YP_007433191.1| - 2.2e-10 40.4 0.3 4.2e-10 39.5 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|449066109|ref|YP_007433191.1| - 8.6e-09 35.2 0.3 7.2e-06 25.7 0.1 3.0 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) SAP PF02037.27 gi|449066109|ref|YP_007433191.1| - 0.075 12.8 0.1 0.45 10.3 0.0 2.4 2 0 0 2 2 2 0 SAP domain Med2 PF11214.8 gi|449066109|ref|YP_007433191.1| - 0.088 13.0 0.1 0.25 11.5 0.1 1.7 1 0 0 1 1 1 0 Mediator complex subunit 2 HHA PF05321.11 gi|449066109|ref|YP_007433191.1| - 0.14 12.5 0.1 1.1 9.7 0.0 2.3 2 0 0 2 2 2 0 Haemolysin expression modulating protein Peptidase_M50 PF02163.22 gi|449066110|ref|YP_007433192.1| - 6.4e-22 78.0 4.2 6.4e-22 78.0 4.2 1.6 2 0 0 2 2 2 1 Peptidase family M50 PDZ_6 PF17820.1 gi|449066110|ref|YP_007433192.1| - 0.049 13.5 0.0 0.29 11.0 0.0 2.2 2 0 0 2 2 2 0 PDZ domain PDZ_2 PF13180.6 gi|449066110|ref|YP_007433192.1| - 0.06 13.7 0.0 0.24 11.8 0.0 1.9 2 0 0 2 2 2 0 PDZ domain NTP_transf_2 PF01909.23 gi|449066111|ref|YP_007433193.1| - 5.3e-07 29.9 0.3 1.1e-06 28.8 0.1 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|449066111|ref|YP_007433193.1| - 2.7e-05 24.2 0.0 5.8e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF1122 PF06557.11 gi|449066112|ref|YP_007433194.1| - 1e-65 220.4 0.4 1.3e-65 220.1 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Radical_SAM PF04055.21 gi|449066113|ref|YP_007433195.1| - 7.4e-11 42.7 0.1 3.9e-08 33.8 0.0 2.6 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|449066113|ref|YP_007433195.1| - 2.3e-08 34.2 0.0 4.1e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|449066113|ref|YP_007433195.1| - 2.8e-06 27.6 0.0 5.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain eRF1_1 PF03463.15 gi|449066114|ref|YP_007433196.1| - 8.4e-24 84.0 1.6 1.1e-23 83.6 0.7 1.6 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|449066114|ref|YP_007433196.1| - 4.5e-21 75.4 5.2 2.5e-20 73.1 0.3 2.7 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|449066114|ref|YP_007433196.1| - 4e-06 27.2 0.5 2.2e-05 24.8 0.2 2.3 2 1 0 2 2 2 1 eRF1 domain 2 baeRF_family2 PF18844.1 gi|449066114|ref|YP_007433196.1| - 0.0029 17.7 0.0 0.0043 17.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 2 MobL PF18555.1 gi|449066114|ref|YP_007433196.1| - 0.013 14.8 0.9 0.021 14.1 0.9 1.3 1 0 0 1 1 1 0 MobL relaxases Methyltr_RsmB-F PF01189.17 gi|449066114|ref|YP_007433196.1| - 0.074 12.7 0.2 0.37 10.4 0.0 2.0 2 1 0 2 2 2 0 16S rRNA methyltransferase RsmB/F Maelstrom PF13017.6 gi|449066114|ref|YP_007433196.1| - 0.14 11.8 0.8 0.62 9.7 0.8 2.0 1 1 0 1 1 1 0 piRNA pathway germ-plasm component Acetyltransf_1 PF00583.25 gi|449066115|ref|YP_007433197.1| - 6.9e-16 58.5 0.1 9.3e-16 58.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|449066115|ref|YP_007433197.1| - 2.1e-12 47.3 0.9 3.3e-12 46.6 0.9 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|449066115|ref|YP_007433197.1| - 3.1e-12 46.5 0.0 3.3e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|449066115|ref|YP_007433197.1| - 4.7e-08 33.3 2.8 4.7e-08 33.3 2.8 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|449066115|ref|YP_007433197.1| - 0.00018 21.4 0.0 0.00026 20.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein GNAT_acetyltr_2 PF13718.6 gi|449066115|ref|YP_007433197.1| - 0.075 12.4 0.1 0.28 10.5 0.0 1.7 1 1 1 2 2 2 0 GNAT acetyltransferase 2 DNA_pol_B PF00136.21 gi|449066116|ref|YP_007433198.1| - 1.7e-44 152.3 0.2 3.2e-44 151.4 0.2 1.5 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|449066116|ref|YP_007433198.1| - 6.6e-40 137.3 7.5 3.3e-38 131.7 7.5 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|449066116|ref|YP_007433198.1| - 2.1e-05 24.6 0.3 0.00012 22.1 0.0 2.4 3 0 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|449066116|ref|YP_007433198.1| - 0.023 14.4 0.0 0.053 13.2 0.0 1.6 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF1947 PF09183.10 gi|449066116|ref|YP_007433198.1| - 0.035 14.4 4.8 1.9 8.9 0.6 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1947) CSN7a_helixI PF18392.1 gi|449066116|ref|YP_007433198.1| - 0.15 11.9 0.1 0.46 10.4 0.1 1.8 1 0 0 1 1 1 0 COP9 signalosome complex subunit 7a helix I domain Toprim_4 PF13662.6 gi|449066117|ref|YP_007433199.1| - 1.2e-10 41.8 0.7 1.2e-09 38.4 0.1 2.6 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|449066117|ref|YP_007433199.1| - 1.3e-05 25.5 0.2 4.8e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|449066117|ref|YP_007433199.1| - 0.00031 20.9 3.1 0.00043 20.5 0.1 2.7 3 0 0 3 3 3 1 Toprim domain DUF1822 PF08852.11 gi|449066117|ref|YP_007433199.1| - 0.0055 15.8 0.2 0.006 15.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1822) DUF2344 PF10105.9 gi|449066117|ref|YP_007433199.1| - 3.9 7.3 7.1 2.1 8.2 2.1 2.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2344) tRNA-synt_1b PF00579.25 gi|449066118|ref|YP_007433200.1| - 5.4e-48 163.8 0.5 3e-36 125.2 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) CNRIP1 PF15043.6 gi|449066118|ref|YP_007433200.1| - 0.038 13.5 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 CB1 cannabinoid receptor-interacting protein 1 Ribosomal_L6e PF01159.19 gi|449066119|ref|YP_007433201.1| - 0.0012 19.3 1.4 0.0015 19.0 1.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L6e Peptidase_C65 PF10275.9 gi|449066119|ref|YP_007433201.1| - 0.01 15.3 1.5 0.012 15.1 1.5 1.1 1 0 0 1 1 1 0 Peptidase C65 Otubain UPF0047 PF01894.17 gi|449066120|ref|YP_007433202.1| - 5.8e-37 126.4 0.0 7.3e-37 126.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AIRS_C PF02769.22 gi|449066121|ref|YP_007433203.1| - 1.9e-07 31.3 0.0 4.6e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|449066121|ref|YP_007433203.1| - 1e-06 29.3 0.1 3.6e-06 27.5 0.1 2.0 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ATP-cone PF03477.16 gi|449066121|ref|YP_007433203.1| - 2.4 8.8 4.4 21 5.8 0.0 3.5 4 0 0 4 4 4 0 ATP cone domain Ribosomal_S13 PF00416.22 gi|449066122|ref|YP_007433204.1| - 6.7e-52 175.2 0.6 8e-52 175.0 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.6 gi|449066122|ref|YP_007433204.1| - 0.0099 15.8 0.1 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix containing domain FbpA PF05833.11 gi|449066122|ref|YP_007433204.1| - 0.087 11.6 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|449066123|ref|YP_007433205.1| - 2.2e-15 56.1 0.1 4.9e-15 55.0 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|449066123|ref|YP_007433205.1| - 8.7e-05 23.4 1.7 0.00072 20.4 1.1 2.5 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|449066124|ref|YP_007433206.1| - 2.3e-49 166.3 2.4 2.7e-49 166.1 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.26 gi|449066125|ref|YP_007433207.1| - 5.4e-28 97.6 0.0 9.6e-28 96.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|449066125|ref|YP_007433207.1| - 1.5e-12 46.7 0.0 2.1e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|449066125|ref|YP_007433207.1| - 0.00063 19.9 9.3 0.0017 18.5 3.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449066125|ref|YP_007433207.1| - 0.3 11.2 12.3 0.16 12.1 1.4 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449066125|ref|YP_007433207.1| - 0.32 12.0 7.8 13 6.8 0.0 3.2 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|449066125|ref|YP_007433207.1| - 0.84 9.8 8.5 1 9.5 4.1 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066125|ref|YP_007433207.1| - 0.9 10.2 12.0 12 6.5 1.8 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449066125|ref|YP_007433207.1| - 5.8 7.2 18.1 0.37 10.9 1.2 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449066125|ref|YP_007433207.1| - 8.3 6.6 12.2 2.6 8.2 2.1 3.0 2 1 0 3 3 3 0 4Fe-4S dicluster domain Ribosomal_L27A PF00828.19 gi|449066126|ref|YP_007433208.1| - 3.4e-07 31.0 0.1 4.7e-07 30.5 0.1 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|449066126|ref|YP_007433208.1| - 5.8e-07 29.1 0.2 7.3e-07 28.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L13 PF00572.18 gi|449066127|ref|YP_007433209.1| - 2.1e-12 47.4 0.8 1.5e-10 41.4 0.8 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|449066128|ref|YP_007433210.1| - 3.2e-26 92.2 0.1 3.7e-26 92.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|449066129|ref|YP_007433211.1| - 2.1e-29 101.6 0.4 2.4e-29 101.4 0.4 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S2 PF00318.20 gi|449066130|ref|YP_007433212.1| - 4.7e-27 94.6 0.0 1.9e-15 56.7 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.17 gi|449066131|ref|YP_007433213.1| - 3.6e-87 292.0 0.0 4.1e-87 291.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|449066131|ref|YP_007433213.1| - 0.11 11.6 0.0 0.28 10.2 0.0 1.6 1 1 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase COG4 PF08318.12 gi|449066132|ref|YP_007433214.1| - 0.074 12.1 0.0 0.092 11.8 0.0 1.1 1 0 0 1 1 1 0 COG4 transport protein FMN_dh PF01070.18 gi|449066134|ref|YP_007433216.1| - 9e-13 48.0 0.0 1.2e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|449066134|ref|YP_007433216.1| - 0.0018 17.3 0.2 0.79 8.7 0.1 2.3 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain polyprenyl_synt PF00348.17 gi|449066135|ref|YP_007433217.1| - 2.2e-72 243.2 0.1 2.8e-72 242.9 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Glycos_transf_4 PF00953.21 gi|449066136|ref|YP_007433218.1| - 1.4e-31 109.6 22.1 1.4e-31 109.6 22.1 2.4 3 0 0 3 3 3 1 Glycosyl transferase family 4 CbtA PF09490.10 gi|449066136|ref|YP_007433218.1| - 3.3 7.4 9.5 15 5.2 0.3 2.7 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) HAD_2 PF13419.6 gi|449066137|ref|YP_007433219.1| - 8.8e-30 104.1 0.0 1e-29 103.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449066137|ref|YP_007433219.1| - 4.1e-16 59.9 0.1 2.8e-11 44.1 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|449066137|ref|YP_007433219.1| - 1.4e-08 35.4 0.0 2.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|449066137|ref|YP_007433219.1| - 7.5e-05 22.7 0.0 0.00022 21.2 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|449066137|ref|YP_007433219.1| - 0.00012 22.1 0.2 0.0011 19.0 0.2 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|449066137|ref|YP_007433219.1| - 0.00029 20.7 0.8 2.4 7.9 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase COX1 PF00115.20 gi|449066138|ref|YP_007433220.1| - 4.6e-73 246.5 63.1 4.6e-73 246.5 63.1 2.8 1 1 2 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I DUF5310 PF17237.2 gi|449066138|ref|YP_007433220.1| - 0.12 12.2 0.1 0.3 11.0 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5310) TatD_DNase PF01026.21 gi|449066141|ref|YP_007433223.1| - 1.4e-48 165.5 0.0 1.7e-48 165.2 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase MazE_antitoxin PF04014.18 gi|449066142|ref|YP_007433224.1| - 1.7e-10 40.6 0.2 1.9e-10 40.4 0.2 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|449066142|ref|YP_007433224.1| - 0.00039 20.8 0.2 0.00045 20.6 0.2 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin eIF-1a PF01176.19 gi|449066142|ref|YP_007433224.1| - 0.00095 18.9 0.2 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TrmB PF01978.19 gi|449066143|ref|YP_007433225.1| - 8.1e-16 57.7 0.2 1.1e-15 57.2 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|449066143|ref|YP_007433225.1| - 3.8e-06 26.7 0.8 1.2e-05 25.0 0.3 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|449066143|ref|YP_007433225.1| - 6.1e-05 22.9 0.1 9.6e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|449066143|ref|YP_007433225.1| - 6.8e-05 22.7 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|449066143|ref|YP_007433225.1| - 8.2e-05 22.4 0.3 0.00012 21.8 0.3 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit z-alpha PF02295.17 gi|449066143|ref|YP_007433225.1| - 0.015 15.4 2.0 0.059 13.4 0.3 2.1 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain HTH_DeoR PF08220.12 gi|449066143|ref|YP_007433225.1| - 0.022 14.5 0.2 0.052 13.3 0.0 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|449066143|ref|YP_007433225.1| - 0.03 14.8 0.1 0.059 13.9 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|449066143|ref|YP_007433225.1| - 0.044 14.0 0.2 0.08 13.1 0.2 1.6 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|449066143|ref|YP_007433225.1| - 0.051 13.7 0.3 0.083 13.0 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|449066143|ref|YP_007433225.1| - 0.056 13.2 0.6 0.09 12.5 0.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|449066143|ref|YP_007433225.1| - 0.065 13.3 0.1 0.34 11.0 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|449066143|ref|YP_007433225.1| - 0.088 12.8 0.3 0.18 11.8 0.3 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|449066143|ref|YP_007433225.1| - 0.13 11.9 0.8 0.23 11.1 0.1 1.9 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Diphthami_syn_2 PF01902.17 gi|449066144|ref|YP_007433226.1| - 1.1e-56 191.8 0.2 1.2e-56 191.7 0.2 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|449066144|ref|YP_007433226.1| - 0.015 14.8 0.0 0.19 11.2 0.0 2.4 2 1 1 3 3 3 0 Queuosine biosynthesis protein QueC DOT1 PF08123.13 gi|449066145|ref|YP_007433227.1| - 1.9e-07 30.9 0.0 9.9e-07 28.5 0.0 1.8 2 0 0 2 2 2 1 Histone methylation protein DOT1 Methyltransf_23 PF13489.6 gi|449066145|ref|YP_007433227.1| - 0.014 15.2 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|449066145|ref|YP_007433227.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 2 0 0 2 2 2 0 DNA methylase RrnaAD PF00398.20 gi|449066145|ref|YP_007433227.1| - 0.017 14.2 0.0 0.022 13.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|449066145|ref|YP_007433227.1| - 0.024 14.2 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|449066145|ref|YP_007433227.1| - 0.069 13.8 0.0 0.2 12.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|449066145|ref|YP_007433227.1| - 0.089 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|449066145|ref|YP_007433227.1| - 0.091 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|449066145|ref|YP_007433227.1| - 0.097 12.8 0.0 0.14 12.2 0.0 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|449066145|ref|YP_007433227.1| - 0.12 13.1 0.0 0.26 12.0 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|449066145|ref|YP_007433227.1| - 0.12 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase NTP_transf_3 PF12804.7 gi|449066146|ref|YP_007433228.1| - 7.7e-14 52.4 0.0 1.2e-13 51.7 0.0 1.4 1 1 1 2 2 2 1 MobA-like NTP transferase domain MoeA_N PF03453.17 gi|449066147|ref|YP_007433229.1| - 3.6e-34 117.8 0.0 7.1e-34 116.8 0.0 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|449066147|ref|YP_007433229.1| - 8e-18 64.5 0.0 1.6e-17 63.5 0.0 1.5 2 0 0 2 2 2 1 Probable molybdopterin binding domain 7TMR-HDED PF07697.11 gi|449066147|ref|YP_007433229.1| - 0.0099 16.0 2.6 0.017 15.2 0.4 2.1 2 0 0 2 2 2 1 7TM-HD extracellular MobB PF03205.14 gi|449066148|ref|YP_007433230.1| - 9.7e-22 77.3 0.2 4.9e-21 75.0 0.2 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DAHP_snth_FXD PF18152.1 gi|449066148|ref|YP_007433230.1| - 0.062 13.1 0.2 16 5.4 0.0 2.6 2 1 1 3 3 3 0 DAHP synthase ferredoxin-like domain Methyltransf_11 PF08241.12 gi|449066149|ref|YP_007433231.1| - 3.4e-16 59.7 0.0 5.2e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449066149|ref|YP_007433231.1| - 1e-13 51.8 0.0 1.6e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|449066149|ref|YP_007433231.1| - 6.2e-10 39.2 0.0 1e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449066149|ref|YP_007433231.1| - 2.6e-09 36.8 0.1 2.4e-08 33.6 0.0 2.1 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|449066149|ref|YP_007433231.1| - 6.4e-08 33.3 0.0 1.2e-07 32.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|449066149|ref|YP_007433231.1| - 4.8e-07 29.7 0.0 8.1e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|449066149|ref|YP_007433231.1| - 0.0011 18.2 0.0 0.0015 17.7 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|449066149|ref|YP_007433231.1| - 0.0024 17.8 0.0 0.0032 17.4 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase DUF4234 PF14018.6 gi|449066150|ref|YP_007433232.1| - 0.0075 16.4 6.2 0.0075 16.4 6.2 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4234) DUF4491 PF14898.6 gi|449066150|ref|YP_007433232.1| - 7.1 7.1 13.1 32 5.0 6.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4491) DUF4015 PF13200.6 gi|449066151|ref|YP_007433233.1| - 0.0061 15.6 0.1 0.0077 15.3 0.1 1.0 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain DUF5312 PF17239.2 gi|449066151|ref|YP_007433233.1| - 0.21 9.9 0.0 0.24 9.7 0.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5312) Ribosomal_S8 PF00410.19 gi|449066152|ref|YP_007433234.1| - 0.0057 16.6 0.2 0.0074 16.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Fe_dep_repr_C PF02742.15 gi|449066153|ref|YP_007433235.1| - 7e-28 96.5 1.6 1.3e-27 95.6 0.6 1.9 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|449066153|ref|YP_007433235.1| - 6.1e-12 45.6 0.1 2e-11 43.9 0.0 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|449066153|ref|YP_007433235.1| - 5.9e-08 32.6 0.3 1.1e-07 31.7 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|449066153|ref|YP_007433235.1| - 1.4e-06 28.1 0.0 2.5e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|449066153|ref|YP_007433235.1| - 5.9e-06 26.1 0.0 1.5e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 MarR family FeoA PF04023.14 gi|449066153|ref|YP_007433235.1| - 6.4e-06 26.3 0.5 1.7e-05 25.0 0.2 1.8 2 0 0 2 2 2 1 FeoA domain HTH_DeoR PF08220.12 gi|449066153|ref|YP_007433235.1| - 2.3e-05 24.0 0.1 6.4e-05 22.6 0.1 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|449066153|ref|YP_007433235.1| - 3.5e-05 24.2 0.1 7.3e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|449066153|ref|YP_007433235.1| - 3.6e-05 23.2 0.1 0.00014 21.4 0.0 2.1 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|449066153|ref|YP_007433235.1| - 0.0001 22.0 0.1 0.00022 21.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|449066153|ref|YP_007433235.1| - 0.00012 21.9 0.0 0.00026 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_41 PF14502.6 gi|449066153|ref|YP_007433235.1| - 0.00021 20.9 0.0 0.00058 19.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|449066153|ref|YP_007433235.1| - 0.00046 20.0 0.0 0.00098 19.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|449066153|ref|YP_007433235.1| - 0.0018 18.3 0.0 0.0044 17.1 0.0 1.7 1 0 0 1 1 1 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|449066153|ref|YP_007433235.1| - 0.0031 17.5 0.1 0.0072 16.3 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|449066153|ref|YP_007433235.1| - 0.0031 17.6 0.1 0.014 15.6 0.1 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|449066153|ref|YP_007433235.1| - 0.0034 17.3 0.1 0.012 15.5 0.1 2.0 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.21 gi|449066153|ref|YP_007433235.1| - 0.0035 17.0 0.0 0.03 14.0 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|449066153|ref|YP_007433235.1| - 0.0037 17.2 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|449066153|ref|YP_007433235.1| - 0.0038 17.3 0.0 0.0083 16.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain AAA_assoc_C PF09821.9 gi|449066153|ref|YP_007433235.1| - 0.0052 17.3 0.1 0.0096 16.4 0.1 1.5 1 0 0 1 1 1 1 C-terminal AAA-associated domain Rrf2 PF02082.20 gi|449066153|ref|YP_007433235.1| - 0.0077 16.6 0.0 0.032 14.6 0.0 2.0 2 0 0 2 2 1 1 Transcriptional regulator PadR PF03551.14 gi|449066153|ref|YP_007433235.1| - 0.0084 16.1 0.1 0.075 13.0 0.0 2.5 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family Ribosomal_S19e PF01090.19 gi|449066153|ref|YP_007433235.1| - 0.01 15.5 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HxlR PF01638.17 gi|449066153|ref|YP_007433235.1| - 0.032 14.1 0.1 0.12 12.2 0.1 2.0 2 1 0 2 2 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|449066153|ref|YP_007433235.1| - 0.033 14.0 0.0 0.093 12.5 0.0 1.8 2 0 0 2 2 1 0 IclR helix-turn-helix domain DUF4364 PF14277.6 gi|449066153|ref|YP_007433235.1| - 0.047 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2250 PF10007.9 gi|449066153|ref|YP_007433235.1| - 0.052 13.6 0.2 0.098 12.8 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|449066153|ref|YP_007433235.1| - 0.053 13.5 0.6 0.24 11.4 0.1 2.3 2 0 0 2 2 2 0 HTH domain Topoisom_bac PF01131.20 gi|449066153|ref|YP_007433235.1| - 0.081 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase B-block_TFIIIC PF04182.12 gi|449066153|ref|YP_007433235.1| - 0.084 13.0 0.7 0.18 11.9 0.0 1.9 2 1 0 2 2 2 0 B-block binding subunit of TFIIIC CvfB_WH PF17783.1 gi|449066153|ref|YP_007433235.1| - 0.12 12.2 0.6 16 5.4 0.0 2.4 2 0 0 2 2 2 0 CvfB-like winged helix domain HisKA PF00512.25 gi|449066153|ref|YP_007433235.1| - 0.17 11.9 1.8 12 6.1 0.0 2.7 3 0 0 3 3 2 0 His Kinase A (phospho-acceptor) domain DUF4147 PF13660.6 gi|449066154|ref|YP_007433236.1| - 2.1e-48 164.9 0.0 3e-48 164.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|449066154|ref|YP_007433236.1| - 3.2e-22 78.8 0.2 6.1e-22 77.9 0.2 1.5 1 0 0 1 1 1 1 MOFRL family BPD_transp_1 PF00528.22 gi|449066156|ref|YP_007433238.1| - 1.5e-13 50.9 13.0 1.5e-13 50.9 13.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TIM PF00121.18 gi|449066158|ref|YP_007433240.1| - 7.3e-14 51.7 0.2 3.5e-13 49.5 0.0 2.0 2 0 0 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|449066158|ref|YP_007433240.1| - 1.8e-06 27.5 0.5 2.9e-06 26.8 0.5 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.17 gi|449066158|ref|YP_007433240.1| - 7e-06 25.4 0.1 1.4e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|449066158|ref|YP_007433240.1| - 2.7e-05 23.4 0.1 4e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|449066158|ref|YP_007433240.1| - 0.00014 21.4 0.6 0.003 17.1 0.2 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|449066158|ref|YP_007433240.1| - 0.00041 19.3 0.4 0.00082 18.3 0.4 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain NMO PF03060.15 gi|449066158|ref|YP_007433240.1| - 0.0033 16.9 0.3 0.0033 16.9 0.3 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|449066158|ref|YP_007433240.1| - 0.0066 15.5 0.6 0.011 14.8 0.6 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|449066158|ref|YP_007433240.1| - 0.033 13.4 0.5 0.058 12.6 0.1 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|449066158|ref|YP_007433240.1| - 0.038 13.2 0.0 0.079 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.12 gi|449066158|ref|YP_007433240.1| - 0.045 13.2 2.3 0.066 12.6 0.2 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF429 PF04250.13 gi|449066159|ref|YP_007433241.1| - 7.8e-09 35.6 0.1 0.00078 19.3 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF429) Na_H_Exchanger PF00999.21 gi|449066160|ref|YP_007433242.1| - 1.4e-25 89.9 41.3 1.4e-25 89.9 41.3 2.6 2 1 0 2 2 2 1 Sodium/hydrogen exchanger family Esterase PF00756.20 gi|449066161|ref|YP_007433243.1| - 3.8e-13 49.7 0.0 9.4e-13 48.4 0.0 1.7 1 1 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|449066161|ref|YP_007433243.1| - 0.0018 17.6 0.0 0.0027 17.0 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DUF2920 PF11144.8 gi|449066161|ref|YP_007433243.1| - 0.012 14.8 0.1 0.016 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) Abhydrolase_1 PF00561.20 gi|449066161|ref|YP_007433243.1| - 0.056 13.1 0.0 0.083 12.5 0.0 1.5 1 0 0 1 1 1 0 alpha/beta hydrolase fold Esterase_phd PF10503.9 gi|449066161|ref|YP_007433243.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_2 PF02230.16 gi|449066161|ref|YP_007433243.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase NUDIX PF00293.28 gi|449066162|ref|YP_007433244.1| - 1.2e-09 38.4 0.3 1.6e-09 37.9 0.2 1.3 1 1 0 1 1 1 1 NUDIX domain Lyase_1 PF00206.20 gi|449066163|ref|YP_007433245.1| - 4.5e-102 341.6 0.0 5.7e-102 341.3 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|449066163|ref|YP_007433245.1| - 3.6e-13 49.7 0.5 1.3e-12 47.9 0.1 2.3 3 0 0 3 3 3 1 Fumarase C C-terminus RuvA_C PF07499.13 gi|449066163|ref|YP_007433245.1| - 0.011 16.2 0.0 0.26 11.8 0.0 3.0 3 0 0 3 3 3 0 RuvA, C-terminal domain Lactamase_B PF00753.27 gi|449066164|ref|YP_007433246.1| - 8.6e-27 94.4 0.2 1e-26 94.2 0.2 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|449066164|ref|YP_007433246.1| - 0.00021 20.9 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Glycos_transf_2 PF00535.26 gi|449066165|ref|YP_007433247.1| - 1.7e-18 67.0 0.1 2.6e-18 66.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|449066165|ref|YP_007433247.1| - 1.5e-16 61.0 0.0 2e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|449066165|ref|YP_007433247.1| - 2.3e-12 46.7 0.0 4.4e-12 45.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|449066165|ref|YP_007433247.1| - 5e-11 42.9 0.2 8e-11 42.2 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Chitin_synth_2 PF03142.15 gi|449066165|ref|YP_007433247.1| - 0.099 11.2 2.4 1.6 7.3 2.4 2.7 2 1 0 2 2 2 0 Chitin synthase STE3 PF02076.15 gi|449066165|ref|YP_007433247.1| - 2.6 7.2 9.5 0.57 9.3 4.8 2.2 2 1 0 2 2 2 0 Pheromone A receptor MMPL PF03176.15 gi|449066166|ref|YP_007433248.1| - 4.3e-50 170.5 25.4 1.8e-28 99.5 10.9 2.2 2 0 0 2 2 2 2 MMPL family Helicase_RecD PF05127.14 gi|449066167|ref|YP_007433249.1| - 5.2e-48 163.2 0.0 8.1e-48 162.6 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|449066167|ref|YP_007433249.1| - 4.4e-30 104.8 0.0 4.8e-21 75.2 0.0 2.4 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|449066167|ref|YP_007433249.1| - 8.1e-21 73.8 0.0 1.9e-20 72.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|449066167|ref|YP_007433249.1| - 2.8e-06 27.5 0.0 8.4e-06 26.0 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|449066167|ref|YP_007433249.1| - 6.1e-06 26.6 0.2 4e-05 24.0 0.0 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.6 gi|449066167|ref|YP_007433249.1| - 0.00024 20.9 0.0 0.0011 18.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain Acetyltransf_10 PF13673.7 gi|449066167|ref|YP_007433249.1| - 0.0016 18.3 0.0 0.0038 17.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_22 PF13401.6 gi|449066167|ref|YP_007433249.1| - 0.0036 17.6 0.2 0.087 13.1 0.0 2.9 1 1 1 2 2 2 1 AAA domain tRNA_bind_2 PF13725.6 gi|449066167|ref|YP_007433249.1| - 0.0037 17.0 0.0 0.0071 16.1 0.0 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain FR47 PF08445.10 gi|449066167|ref|YP_007433249.1| - 0.062 13.3 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|449066167|ref|YP_007433249.1| - 0.13 12.4 0.0 1 9.6 0.0 2.3 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase SpoIIM PF01944.17 gi|449066168|ref|YP_007433250.1| - 1.6e-07 31.5 12.2 1.6e-07 31.5 12.2 2.1 2 0 0 2 2 2 1 Stage II sporulation protein M PaREP1 PF05942.11 gi|449066168|ref|YP_007433250.1| - 0.19 11.7 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family Jagunal PF07086.12 gi|449066168|ref|YP_007433250.1| - 2.1 8.3 9.9 1.1 9.2 0.6 2.3 2 0 0 2 2 2 0 Jagunal, ER re-organisation during oogenesis Exo_endo_phos PF03372.23 gi|449066169|ref|YP_007433251.1| - 9e-13 48.3 0.0 1.5e-12 47.5 0.0 1.4 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|449066169|ref|YP_007433251.1| - 0.00013 21.8 0.0 0.00029 20.6 0.0 1.6 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase TusA PF01206.17 gi|449066170|ref|YP_007433252.1| - 7.2e-15 54.6 0.5 8.5e-15 54.3 0.5 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA PurS PF02700.14 gi|449066170|ref|YP_007433252.1| - 0.063 13.5 0.0 0.087 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase Sigma70_r4_2 PF08281.12 gi|449066170|ref|YP_007433252.1| - 0.21 11.3 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF1641 PF07849.11 gi|449066171|ref|YP_007433253.1| - 1.3e-10 41.0 1.4 1.6e-10 40.6 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) GED PF02212.18 gi|449066171|ref|YP_007433253.1| - 0.015 15.4 5.3 1.3 9.2 0.9 2.8 2 1 0 2 2 2 0 Dynamin GTPase effector domain CDT1 PF08839.11 gi|449066171|ref|YP_007433253.1| - 0.025 14.9 0.1 11 6.3 0.0 2.3 1 1 0 2 2 2 0 DNA replication factor CDT1 like MgtE_N PF03448.17 gi|449066171|ref|YP_007433253.1| - 0.088 13.4 16.6 0.4 11.3 2.2 4.4 1 1 4 5 5 5 0 MgtE intracellular N domain DUF1719 PF08224.11 gi|449066171|ref|YP_007433253.1| - 0.13 11.3 0.3 0.24 10.5 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1719) DUF3847 PF12958.7 gi|449066171|ref|YP_007433253.1| - 0.14 12.3 2.8 15 5.8 0.0 4.4 4 1 1 5 5 5 0 Protein of unknown function (DUF3847) Cas_Csa4 PF09703.10 gi|449066171|ref|YP_007433253.1| - 0.19 11.0 2.5 0.25 10.6 0.3 2.2 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Csa4) Enkurin PF13864.6 gi|449066171|ref|YP_007433253.1| - 0.2 12.1 3.3 3 8.3 0.2 2.5 2 0 0 2 2 2 0 Calmodulin-binding Myotub-related PF06602.14 gi|449066171|ref|YP_007433253.1| - 0.33 9.8 3.9 3.4 6.5 0.4 2.1 2 0 0 2 2 2 0 Myotubularin-like phosphatase domain Pigment_DH PF06324.11 gi|449066171|ref|YP_007433253.1| - 1.7 8.9 5.9 40 4.6 0.0 4.0 4 0 0 4 4 4 0 Pigment-dispersing hormone (PDH) UPF0728 PF15092.6 gi|449066172|ref|YP_007433254.1| - 0.021 14.7 0.3 0.11 12.3 0.2 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0728 MucBP_2 PF17965.1 gi|449066172|ref|YP_007433254.1| - 0.038 14.5 0.2 0.24 12.0 0.0 2.1 2 0 0 2 2 2 0 Mucin binding domain DUF2674 PF10879.8 gi|449066172|ref|YP_007433254.1| - 0.073 12.6 0.3 0.18 11.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2674) TrmB PF01978.19 gi|449066173|ref|YP_007433255.1| - 2.6e-13 49.6 0.0 3.5e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449066173|ref|YP_007433255.1| - 2.5e-09 36.9 0.0 3.9e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|449066173|ref|YP_007433255.1| - 6.8e-08 32.3 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|449066173|ref|YP_007433255.1| - 1.8e-07 30.6 0.0 2.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|449066173|ref|YP_007433255.1| - 7.1e-05 22.6 0.0 8.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|449066173|ref|YP_007433255.1| - 9.6e-05 22.1 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|449066173|ref|YP_007433255.1| - 0.00011 22.6 0.0 0.00019 21.8 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|449066173|ref|YP_007433255.1| - 0.00037 20.4 0.0 0.00055 19.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|449066173|ref|YP_007433255.1| - 0.0011 19.2 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mga PF05043.13 gi|449066173|ref|YP_007433255.1| - 0.0013 19.3 0.0 0.0023 18.5 0.0 1.5 1 1 0 1 1 1 1 Mga helix-turn-helix domain Fe_dep_repress PF01325.19 gi|449066173|ref|YP_007433255.1| - 0.0016 18.6 0.0 0.0026 17.9 0.0 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|449066173|ref|YP_007433255.1| - 0.0024 17.7 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|449066173|ref|YP_007433255.1| - 0.0088 15.7 0.0 0.029 14.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|449066173|ref|YP_007433255.1| - 0.013 15.5 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|449066173|ref|YP_007433255.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.6 gi|449066173|ref|YP_007433255.1| - 0.044 13.5 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF505 PF04458.12 gi|449066173|ref|YP_007433255.1| - 0.08 11.3 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF5062 PF16691.5 gi|449066173|ref|YP_007433255.1| - 0.09 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5062) HTH_Crp_2 PF13545.6 gi|449066173|ref|YP_007433255.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Dimerisation2 PF16864.5 gi|449066173|ref|YP_007433255.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain Epimerase PF01370.21 gi|449066174|ref|YP_007433256.1| - 4.5e-10 39.4 0.1 6.8e-10 38.8 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|449066174|ref|YP_007433256.1| - 6.2e-09 35.4 0.0 6.5e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Sacchrp_dh_NADP PF03435.18 gi|449066174|ref|YP_007433256.1| - 8e-08 32.6 0.0 4.7e-07 30.1 0.0 2.1 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_4 PF07993.12 gi|449066174|ref|YP_007433256.1| - 0.0055 15.9 0.0 0.0094 15.1 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein ThiF PF00899.21 gi|449066174|ref|YP_007433256.1| - 0.037 13.4 0.0 0.065 12.6 0.0 1.5 2 0 0 2 2 2 0 ThiF family UN_NPL4 PF11543.8 gi|449066174|ref|YP_007433256.1| - 0.11 13.0 0.1 0.24 11.9 0.1 1.5 1 0 0 1 1 1 0 Nuclear pore localisation protein NPL4 Aldo_ket_red PF00248.21 gi|449066175|ref|YP_007433257.1| - 1.6e-67 227.8 0.1 1.3e-65 221.5 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Pyr_redox_2 PF07992.14 gi|449066176|ref|YP_007433258.1| - 1.5e-51 175.4 1.3 1.5e-51 175.4 0.3 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449066176|ref|YP_007433258.1| - 1.4e-20 73.6 5.6 2.3e-13 50.5 0.1 4.0 6 0 0 6 6 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|449066176|ref|YP_007433258.1| - 6e-15 55.5 0.1 2.1e-14 53.7 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|449066176|ref|YP_007433258.1| - 1.4e-13 50.8 0.3 4.4e-09 36.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|449066176|ref|YP_007433258.1| - 4.1e-13 49.2 6.6 6.6e-06 25.4 1.7 4.0 3 1 0 3 3 3 3 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|449066176|ref|YP_007433258.1| - 1.6e-11 43.9 3.3 1.2e-06 27.9 0.1 3.4 3 0 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.6 gi|449066176|ref|YP_007433258.1| - 1.2e-10 41.5 2.1 3.7e-06 27.1 0.1 2.9 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|449066176|ref|YP_007433258.1| - 8.4e-09 34.6 1.6 1.8e-06 26.9 0.1 3.4 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.7 gi|449066176|ref|YP_007433258.1| - 2.5e-08 33.7 0.8 4.9e-07 29.4 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|449066176|ref|YP_007433258.1| - 1.4e-07 31.0 2.5 0.025 13.9 0.0 3.3 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|449066176|ref|YP_007433258.1| - 2.3e-06 27.1 1.0 0.02 14.1 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|449066176|ref|YP_007433258.1| - 2.1e-05 24.3 6.4 0.006 16.2 0.2 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|449066176|ref|YP_007433258.1| - 0.017 14.0 0.4 0.41 9.4 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Thi4 PF01946.17 gi|449066176|ref|YP_007433258.1| - 0.022 14.0 0.5 0.11 11.7 0.1 2.2 2 0 0 2 2 2 0 Thi4 family Amino_oxidase PF01593.24 gi|449066176|ref|YP_007433258.1| - 0.034 13.4 0.3 2.1 7.5 0.0 3.0 4 0 0 4 4 4 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|449066176|ref|YP_007433258.1| - 0.044 13.3 2.4 0.3 10.7 0.0 3.1 4 0 0 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Rubredoxin_C PF18267.1 gi|449066176|ref|YP_007433258.1| - 0.087 12.8 0.1 0.43 10.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin NAD+ reductase C-terminal domain Gp_UL130 PF11668.8 gi|449066176|ref|YP_007433258.1| - 0.089 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 HCMV glycoprotein pUL130 Lycopene_cycl PF05834.12 gi|449066176|ref|YP_007433258.1| - 0.18 10.8 3.3 0.21 10.6 0.1 2.5 4 0 0 4 4 4 0 Lycopene cyclase protein ThiC_Rad_SAM PF01964.18 gi|449066177|ref|YP_007433259.1| - 6.2e-165 549.0 0.0 7.3e-165 548.8 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family GTP_EFTU_D2 PF03144.25 gi|449066178|ref|YP_007433260.1| - 0.0028 18.0 0.3 0.084 13.3 0.3 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 Arc_PepC_II PF06847.11 gi|449066179|ref|YP_007433261.1| - 4.3e-21 75.2 0.1 4.3e-21 75.2 0.1 2.6 3 0 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|449066179|ref|YP_007433261.1| - 1.2e-07 32.1 4.6 1.2e-07 32.1 4.6 1.7 2 1 0 2 2 2 1 Type IV leader peptidase family OSR1_C PF12202.8 gi|449066179|ref|YP_007433261.1| - 0.14 12.4 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Oxidative-stress-responsive kinase 1 C-terminal domain DUF973 PF06157.11 gi|449066180|ref|YP_007433262.1| - 2.8e-58 197.4 29.3 5.3e-55 186.7 25.7 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF973) Sec62 PF03839.16 gi|449066180|ref|YP_007433262.1| - 0.95 8.9 2.4 1.8 8.0 2.4 1.4 1 0 0 1 1 1 0 Translocation protein Sec62 Creatininase PF02633.14 gi|449066181|ref|YP_007433263.1| - 1.3e-42 146.0 0.0 1.6e-42 145.7 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF2101 PF09874.9 gi|449066181|ref|YP_007433263.1| - 0.019 14.7 0.6 0.028 14.1 0.6 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) CitMHS PF03600.16 gi|449066182|ref|YP_007433264.1| - 1.8e-12 47.1 19.9 1.8e-12 47.1 13.2 2.0 1 1 1 2 2 2 2 Citrate transporter CitMHS PF03600.16 gi|449066183|ref|YP_007433265.1| - 1.8e-19 70.1 18.5 2.4e-19 69.7 18.5 1.2 1 0 0 1 1 1 1 Citrate transporter ArsB PF02040.15 gi|449066183|ref|YP_007433265.1| - 4.2e-05 23.1 15.2 4.7e-05 22.9 15.2 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein MFS_1 PF07690.16 gi|449066184|ref|YP_007433266.1| - 7.9e-19 67.8 29.3 1.7e-12 46.9 15.8 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily 4HBT PF03061.22 gi|449066185|ref|YP_007433267.1| - 9.8e-22 77.1 0.1 1.1e-10 41.7 0.0 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.6 gi|449066185|ref|YP_007433267.1| - 1.6e-05 25.3 0.0 0.0022 18.5 0.0 2.2 1 1 0 2 2 2 2 Thioesterase-like superfamily Synuclein PF01387.17 gi|449066185|ref|YP_007433267.1| - 0.16 12.2 0.6 0.88 9.8 0.2 2.1 2 0 0 2 2 2 0 Synuclein V-ATPase_C PF03223.15 gi|449066186|ref|YP_007433268.1| - 0.024 14.0 0.1 0.024 14.0 0.1 1.1 1 0 0 1 1 1 0 V-ATPase subunit C DUF3885 PF13021.6 gi|449066186|ref|YP_007433268.1| - 0.15 12.2 0.4 13 6.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3885) DUF87 PF01935.17 gi|449066187|ref|YP_007433269.1| - 3.3e-15 56.8 4.8 1.2e-14 54.9 3.3 2.5 2 1 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|449066187|ref|YP_007433269.1| - 3e-08 32.7 0.0 0.0045 15.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|449066187|ref|YP_007433269.1| - 3.5e-07 29.5 0.0 1.7e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.29 gi|449066187|ref|YP_007433269.1| - 5.8e-05 23.5 0.6 0.021 15.2 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|449066187|ref|YP_007433269.1| - 7.9e-05 21.7 0.1 0.54 9.1 0.0 3.1 3 0 0 3 3 3 2 AAA-like domain AAA_22 PF13401.6 gi|449066187|ref|YP_007433269.1| - 0.001 19.4 0.0 0.74 10.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|449066187|ref|YP_007433269.1| - 0.0031 17.5 0.0 0.76 9.7 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|449066187|ref|YP_007433269.1| - 0.0056 16.1 0.0 0.0098 15.3 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family Zot PF05707.12 gi|449066187|ref|YP_007433269.1| - 0.14 11.7 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) NurA PF09376.10 gi|449066188|ref|YP_007433270.1| - 7.1e-22 78.3 0.3 9e-22 77.9 0.3 1.1 1 0 0 1 1 1 1 NurA domain DUF5486 PF17588.2 gi|449066188|ref|YP_007433270.1| - 0.052 13.4 0.1 0.15 12.0 0.1 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5486) Pyr_redox_2 PF07992.14 gi|449066189|ref|YP_007433271.1| - 1e-45 156.2 0.3 1.3e-45 155.9 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|449066189|ref|YP_007433271.1| - 3.9e-18 65.7 0.0 9.6e-18 64.5 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|449066189|ref|YP_007433271.1| - 1.4e-11 44.7 2.0 1.4e-11 44.7 2.0 3.8 5 0 0 5 5 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449066189|ref|YP_007433271.1| - 2.6e-10 40.1 0.2 2.5e-08 33.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|449066189|ref|YP_007433271.1| - 1.4e-07 31.6 0.2 0.031 14.5 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|449066189|ref|YP_007433271.1| - 7.2e-05 22.0 0.1 0.075 12.1 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|449066189|ref|YP_007433271.1| - 8e-05 21.5 0.3 0.098 11.3 0.0 2.6 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_7 PF13241.6 gi|449066189|ref|YP_007433271.1| - 0.00038 20.9 0.3 0.063 13.7 0.2 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|449066189|ref|YP_007433271.1| - 0.0015 17.7 1.9 0.42 9.6 0.0 2.8 3 0 0 3 3 3 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|449066189|ref|YP_007433271.1| - 0.0038 16.6 0.4 2.1 7.6 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|449066189|ref|YP_007433271.1| - 0.0072 15.4 0.3 2.9 6.9 0.0 2.6 3 0 0 3 3 3 2 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|449066189|ref|YP_007433271.1| - 0.008 16.2 2.8 2.9 7.9 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|449066189|ref|YP_007433271.1| - 0.016 14.4 0.0 0.089 11.9 0.0 2.0 1 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|449066189|ref|YP_007433271.1| - 0.019 15.2 0.6 0.17 12.2 0.3 2.6 3 0 0 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.18 gi|449066189|ref|YP_007433271.1| - 0.021 14.7 0.2 0.038 13.9 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|449066189|ref|YP_007433271.1| - 0.035 13.7 7.7 0.16 11.5 0.8 3.3 2 2 0 4 4 4 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|449066189|ref|YP_007433271.1| - 0.044 13.0 3.2 0.4 9.9 0.0 2.8 3 0 0 3 3 3 0 Thi4 family Transposase_23 PF03017.14 gi|449066189|ref|YP_007433271.1| - 0.097 12.6 0.3 2.1 8.4 0.0 2.5 2 0 0 2 2 2 0 TNP1/EN/SPM transposase Trp_halogenase PF04820.14 gi|449066189|ref|YP_007433271.1| - 0.1 11.5 0.7 0.18 10.6 0.0 1.7 2 0 0 2 2 2 0 Tryptophan halogenase Mqo PF06039.15 gi|449066189|ref|YP_007433271.1| - 0.1 11.1 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) FAD_binding_3 PF01494.19 gi|449066189|ref|YP_007433271.1| - 0.13 11.5 3.0 0.52 9.5 0.4 2.1 2 0 0 2 2 2 0 FAD binding domain bact-PGI_C PF10432.9 gi|449066191|ref|YP_007433273.1| - 5.2e-21 75.3 0.0 2.1e-20 73.3 0.0 1.9 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|449066191|ref|YP_007433273.1| - 5.5e-07 29.5 0.7 4.9e-06 26.4 0.3 2.4 2 1 0 2 2 2 1 SIS domain PK_C PF02887.16 gi|449066191|ref|YP_007433273.1| - 0.037 14.2 0.5 0.56 10.5 0.1 2.6 2 1 1 3 3 3 0 Pyruvate kinase, alpha/beta domain tRNA-synt_1e PF01406.19 gi|449066192|ref|YP_007433274.1| - 3.2e-123 410.9 0.2 5e-123 410.3 0.2 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|449066192|ref|YP_007433274.1| - 5.4e-16 58.3 1.7 1.9e-08 33.5 0.4 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|449066192|ref|YP_007433274.1| - 2.6e-07 31.0 1.2 6.8e-06 26.5 0.5 2.7 3 0 0 3 3 3 1 DALR domain tRNA-synt_1 PF00133.22 gi|449066192|ref|YP_007433274.1| - 9.9e-06 24.1 2.3 0.0024 16.2 0.0 3.1 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|449066192|ref|YP_007433274.1| - 0.00012 21.1 1.1 0.00037 19.5 0.2 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|449066192|ref|YP_007433274.1| - 0.0042 16.0 2.5 0.025 13.5 0.1 3.0 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain Fib_alpha PF08702.10 gi|449066192|ref|YP_007433274.1| - 0.025 14.8 3.9 0.96 9.6 1.6 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family tRNA-synt_1d PF00750.19 gi|449066192|ref|YP_007433274.1| - 0.027 13.4 1.0 0.15 11.0 0.2 2.2 1 1 1 2 2 2 0 tRNA synthetases class I (R) RRF PF01765.19 gi|449066192|ref|YP_007433274.1| - 0.029 14.4 4.2 0.029 14.3 0.9 2.1 2 0 0 2 2 2 0 Ribosome recycling factor SH3BP5 PF05276.14 gi|449066192|ref|YP_007433274.1| - 0.034 13.9 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) TB2_DP1_HVA22 PF03134.19 gi|449066192|ref|YP_007433274.1| - 0.11 12.5 0.3 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 TB2/DP1, HVA22 family TIP120 PF08623.10 gi|449066192|ref|YP_007433274.1| - 0.13 12.0 0.6 1.4 8.6 0.3 2.3 2 0 0 2 2 2 0 TATA-binding protein interacting (TIP20) NUDIX PF00293.28 gi|449066193|ref|YP_007433275.1| - 7.2e-19 68.1 0.0 8.7e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|449066193|ref|YP_007433275.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 NUDIX domain ELFV_dehydrog PF00208.21 gi|449066195|ref|YP_007433277.1| - 1.4e-66 224.7 3.2 1.8e-66 224.3 3.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|449066195|ref|YP_007433277.1| - 3.3e-54 182.3 0.0 8.6e-54 180.9 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|449066195|ref|YP_007433277.1| - 0.0029 17.0 0.4 0.0051 16.2 0.4 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|449066195|ref|YP_007433277.1| - 0.018 14.4 1.6 0.035 13.4 1.0 1.9 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Bac_GDH PF05088.12 gi|449066195|ref|YP_007433277.1| - 0.031 11.8 0.1 0.043 11.3 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AdoHcyase_NAD PF00670.21 gi|449066195|ref|YP_007433277.1| - 0.11 12.5 0.9 0.34 11.0 0.9 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF131 PF01998.17 gi|449066196|ref|YP_007433278.1| - 8.6e-23 79.8 1.9 8.6e-23 79.8 1.9 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 MpPF26 PF07666.11 gi|449066196|ref|YP_007433278.1| - 0.0051 16.9 3.9 0.0076 16.4 3.8 1.4 1 1 0 1 1 1 1 M penetrans paralogue family 26 DUF5305 PF17231.2 gi|449066196|ref|YP_007433278.1| - 0.0094 15.4 0.1 0.0094 15.4 0.1 2.0 1 1 1 2 2 2 1 Family of unknown function (DUF5305) HemY_N PF07219.13 gi|449066196|ref|YP_007433278.1| - 0.011 16.0 1.9 0.31 11.3 0.0 2.1 2 0 0 2 2 2 0 HemY protein N-terminus Phage_holin_3_6 PF07332.11 gi|449066196|ref|YP_007433278.1| - 0.015 15.3 2.1 4 7.5 0.0 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Baculo_11_kDa PF06143.11 gi|449066196|ref|YP_007433278.1| - 0.021 14.4 7.3 0.91 9.1 0.0 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family OAD_gamma PF04277.13 gi|449066196|ref|YP_007433278.1| - 0.023 15.3 0.1 0.023 15.3 0.1 2.2 2 0 0 2 2 1 0 Oxaloacetate decarboxylase, gamma chain Saf_2TM PF18303.1 gi|449066196|ref|YP_007433278.1| - 0.046 13.3 6.3 0.15 11.7 0.3 2.0 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain TMEM100 PF16311.5 gi|449066196|ref|YP_007433278.1| - 0.048 13.2 1.4 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 Transmembrane protein 100 DUF4190 PF13828.6 gi|449066196|ref|YP_007433278.1| - 0.057 13.2 12.3 0.53 10.1 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) GRP PF07172.11 gi|449066196|ref|YP_007433278.1| - 0.2 12.3 2.9 0.89 10.3 0.0 2.0 2 0 0 2 2 2 0 Glycine rich protein family DUF2207 PF09972.9 gi|449066196|ref|YP_007433278.1| - 0.26 10.0 3.2 0.32 9.7 3.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) EphA2_TM PF14575.6 gi|449066196|ref|YP_007433278.1| - 0.27 12.1 8.2 0.29 12.0 0.0 2.1 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain DUF3784 PF12650.7 gi|449066196|ref|YP_007433278.1| - 0.41 10.9 11.1 2.9 8.1 10.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) TMEM51 PF15345.6 gi|449066196|ref|YP_007433278.1| - 0.42 10.4 5.5 1.1 9.0 5.3 1.8 1 1 0 1 1 1 0 Transmembrane protein 51 DUF3899 PF13038.6 gi|449066196|ref|YP_007433278.1| - 0.43 11.1 6.4 11 6.7 6.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3899) DUF4736 PF15883.5 gi|449066196|ref|YP_007433278.1| - 0.47 10.1 3.4 8.4 6.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4736) FixQ PF05545.11 gi|449066196|ref|YP_007433278.1| - 0.58 10.2 2.5 5.3 7.1 0.0 2.5 2 1 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF2371 PF10177.9 gi|449066196|ref|YP_007433278.1| - 0.61 10.3 10.4 9.2 6.4 9.6 2.0 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) TarH PF02203.15 gi|449066196|ref|YP_007433278.1| - 0.7 9.8 0.0 0.7 9.8 0.0 1.9 2 0 0 2 2 1 0 Tar ligand binding domain homologue Sigma_reg_N PF13800.6 gi|449066196|ref|YP_007433278.1| - 0.72 10.2 6.3 2.9 8.2 0.1 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Pox_A14 PF05767.12 gi|449066196|ref|YP_007433278.1| - 0.75 10.0 8.8 0.24 11.6 0.2 2.2 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Tetraspanin PF00335.20 gi|449066196|ref|YP_007433278.1| - 1.2 8.8 5.5 3.3 7.4 5.5 1.6 1 1 0 1 1 1 0 Tetraspanin family DUF2681 PF10883.8 gi|449066196|ref|YP_007433278.1| - 1.4 9.4 4.8 14 6.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) SdpI PF13630.6 gi|449066196|ref|YP_007433278.1| - 2.3 8.4 9.4 1.3 9.2 0.4 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family Neurensin PF14927.6 gi|449066196|ref|YP_007433278.1| - 3.6 7.3 8.4 3.6 7.3 0.1 2.1 1 1 1 2 2 2 0 Neurensin DUF4083 PF13314.6 gi|449066196|ref|YP_007433278.1| - 6.5 6.8 11.9 8.2 6.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) AAA_15 PF13175.6 gi|449066197|ref|YP_007433279.1| - 8.9e-27 94.7 9.0 2.9e-15 56.8 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|449066197|ref|YP_007433279.1| - 4.7e-20 72.6 1.4 3.8e-14 53.2 0.0 2.6 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449066197|ref|YP_007433279.1| - 1.9e-08 34.0 0.9 2.8e-07 30.2 0.9 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|449066197|ref|YP_007433279.1| - 2.7e-07 31.3 0.7 2.7e-07 31.3 0.7 1.7 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|449066197|ref|YP_007433279.1| - 0.015 15.8 0.4 0.4 11.2 0.4 2.7 2 1 0 2 2 2 0 ABC transporter UTP15_C PF09384.10 gi|449066197|ref|YP_007433279.1| - 0.055 13.2 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 UTP15 C terminal DUF2813 PF11398.8 gi|449066197|ref|YP_007433279.1| - 0.1 11.8 0.3 1.5 8.0 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) adh_short_C2 PF13561.6 gi|449066198|ref|YP_007433280.1| - 3.3e-48 164.3 0.0 5.3e-48 163.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449066198|ref|YP_007433280.1| - 7.6e-31 107.1 0.0 9.5e-31 106.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449066198|ref|YP_007433280.1| - 2.2e-05 24.4 0.0 3.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 KR domain TA_inhibitor PF17574.2 gi|449066198|ref|YP_007433280.1| - 0.038 14.0 0.0 0.095 12.7 0.0 1.7 1 0 0 1 1 1 0 Inhibitor of toxin/antitoxin system (Gp4.5) THF_DHG_CYH_C PF02882.19 gi|449066198|ref|YP_007433280.1| - 0.087 12.1 0.1 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 gi|449066198|ref|YP_007433280.1| - 0.15 11.5 0.0 0.34 10.3 0.0 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family UDG PF03167.19 gi|449066199|ref|YP_007433281.1| - 8.4e-48 162.3 0.0 1.1e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Baculo_LEF5_C PF11792.8 gi|449066199|ref|YP_007433281.1| - 0.33 10.7 0.2 0.33 10.7 0.2 1.7 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain Terminase_5 PF06056.12 gi|449066200|ref|YP_007433282.1| - 0.035 14.0 0.1 0.081 12.8 0.1 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) PAP_assoc PF03828.19 gi|449066200|ref|YP_007433282.1| - 0.049 13.9 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 Cid1 family poly A polymerase GCV_T PF01571.21 gi|449066200|ref|YP_007433282.1| - 0.17 11.2 0.0 0.2 11.0 0.0 1.1 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain Fe_dep_repr_C PF02742.15 gi|449066201|ref|YP_007433283.1| - 2.7e-19 69.0 0.0 4.3e-19 68.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|449066201|ref|YP_007433283.1| - 1.1e-05 25.5 0.0 1.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|449066201|ref|YP_007433283.1| - 1.5e-05 24.8 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|449066201|ref|YP_007433283.1| - 0.00011 22.1 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|449066201|ref|YP_007433283.1| - 0.00021 21.1 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449066201|ref|YP_007433283.1| - 0.00039 20.2 0.0 0.0016 18.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|449066201|ref|YP_007433283.1| - 0.00088 19.0 0.0 0.0018 18.0 0.0 1.6 2 0 0 2 2 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|449066201|ref|YP_007433283.1| - 0.0016 18.3 0.0 0.0035 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 gi|449066201|ref|YP_007433283.1| - 0.0019 18.2 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_IclR PF09339.10 gi|449066201|ref|YP_007433283.1| - 0.0019 17.9 0.0 0.015 15.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|449066201|ref|YP_007433283.1| - 0.015 15.8 0.1 0.092 13.3 0.0 2.1 1 1 1 2 2 2 0 Winged helix DNA-binding domain PI-TkoII_IV PF18714.1 gi|449066201|ref|YP_007433283.1| - 0.03 13.8 0.1 0.033 13.7 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV Ribosomal_S19e PF01090.19 gi|449066201|ref|YP_007433283.1| - 0.031 14.0 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_12 PF08461.10 gi|449066201|ref|YP_007433283.1| - 0.034 14.1 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain IF2_N PF04760.15 gi|449066201|ref|YP_007433283.1| - 0.045 13.6 0.3 4.1 7.3 0.0 3.0 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region Rrf2 PF02082.20 gi|449066201|ref|YP_007433283.1| - 0.047 14.0 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator FtsK_gamma PF09397.10 gi|449066201|ref|YP_007433283.1| - 0.14 11.9 0.0 0.53 10.1 0.0 1.9 2 0 0 2 2 2 0 Ftsk gamma domain HTH_Crp_2 PF13545.6 gi|449066201|ref|YP_007433283.1| - 0.14 12.1 0.0 0.37 10.8 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain UBA PF00627.31 gi|449066201|ref|YP_007433283.1| - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 UBA/TS-N domain DHDPS PF00701.22 gi|449066202|ref|YP_007433284.1| - 6.4e-53 179.3 0.0 7.6e-53 179.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HTH_20 PF12840.7 gi|449066203|ref|YP_007433285.1| - 3.5e-06 27.0 0.0 5.9e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|449066203|ref|YP_007433285.1| - 1.5e-05 24.8 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|449066203|ref|YP_007433285.1| - 0.00011 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.6 gi|449066203|ref|YP_007433285.1| - 0.00028 20.4 0.0 0.00075 19.0 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|449066203|ref|YP_007433285.1| - 0.00029 21.2 0.0 0.00046 20.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|449066203|ref|YP_007433285.1| - 0.0033 17.3 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|449066203|ref|YP_007433285.1| - 0.0035 17.2 0.3 0.005 16.7 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|449066203|ref|YP_007433285.1| - 0.004 17.1 0.2 0.0083 16.1 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_12 PF08461.10 gi|449066203|ref|YP_007433285.1| - 0.076 13.0 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_28 PF13518.6 gi|449066203|ref|YP_007433285.1| - 0.17 12.0 0.0 0.3 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain CbiA PF01656.23 gi|449066204|ref|YP_007433286.1| - 0.00019 21.5 0.0 0.083 13.0 0.0 3.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.6 gi|449066204|ref|YP_007433286.1| - 0.0026 18.3 0.1 0.018 15.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF1878 PF08963.10 gi|449066204|ref|YP_007433286.1| - 4.7 7.7 7.0 0.51 10.8 0.7 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1878) Aldedh PF00171.22 gi|449066205|ref|YP_007433287.1| - 2.1e-134 448.5 0.0 2.8e-134 448.1 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|449066205|ref|YP_007433287.1| - 2.1e-05 23.8 0.0 0.00014 21.1 0.0 2.1 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Med28 PF11594.8 gi|449066205|ref|YP_007433287.1| - 0.18 11.9 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Mediator complex subunit 28 BNR_4 PF15892.5 gi|449066206|ref|YP_007433288.1| - 0.049 13.0 0.3 0.049 13.0 0.3 1.7 2 0 0 2 2 2 0 BNR repeat-containing family member CoA_binding_2 PF13380.6 gi|449066207|ref|YP_007433289.1| - 3e-37 127.6 0.1 3.5e-37 127.4 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|449066207|ref|YP_007433289.1| - 0.00022 21.9 0.0 0.00035 21.2 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain DUF308 PF03729.13 gi|449066208|ref|YP_007433290.1| - 0.0066 16.7 3.0 0.0088 16.3 3.0 1.2 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF2970 PF11174.8 gi|449066208|ref|YP_007433290.1| - 0.55 10.1 6.9 1.1 9.2 6.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) TFIIS_C PF01096.18 gi|449066209|ref|YP_007433291.1| - 2.2e-24 85.0 11.5 3.5e-22 78.0 1.7 3.2 3 0 0 3 3 3 2 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|449066209|ref|YP_007433291.1| - 3.3e-10 39.6 3.3 3.3e-10 39.6 3.3 3.2 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|449066209|ref|YP_007433291.1| - 9e-08 32.0 11.4 0.0013 18.6 2.0 2.4 2 1 0 2 2 2 2 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|449066209|ref|YP_007433291.1| - 3.2e-06 27.2 7.1 6.9e-05 22.9 1.3 2.2 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.12 gi|449066209|ref|YP_007433291.1| - 5e-06 25.9 6.5 0.022 14.3 0.2 3.1 2 2 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|449066209|ref|YP_007433291.1| - 5.2e-05 22.5 14.1 0.23 10.9 0.2 4.3 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.7 gi|449066209|ref|YP_007433291.1| - 0.00013 21.9 10.4 0.0018 18.2 1.7 2.8 2 1 1 3 3 3 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|449066209|ref|YP_007433291.1| - 0.00032 21.0 6.4 0.016 15.6 0.9 2.4 2 0 0 2 2 2 2 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|449066209|ref|YP_007433291.1| - 0.00068 19.5 10.2 0.062 13.2 1.6 2.9 1 1 2 3 3 3 3 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|449066209|ref|YP_007433291.1| - 0.0013 18.6 12.2 0.0089 15.9 2.2 3.6 2 2 0 2 2 2 1 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|449066209|ref|YP_007433291.1| - 0.0014 18.5 12.8 0.32 10.9 0.4 4.3 4 0 0 4 4 4 1 zinc-ribbon domain DUF35_N PF12172.8 gi|449066209|ref|YP_007433291.1| - 0.0017 18.2 7.5 6.2 6.8 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|449066209|ref|YP_007433291.1| - 0.0027 17.8 14.9 5.8 7.1 0.6 4.4 4 1 1 5 5 5 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|449066209|ref|YP_007433291.1| - 0.0034 17.0 9.9 0.064 12.9 0.2 3.8 4 0 0 4 4 4 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|449066209|ref|YP_007433291.1| - 0.0037 16.9 24.0 0.097 12.4 0.2 4.6 5 0 0 5 5 4 2 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|449066209|ref|YP_007433291.1| - 0.0046 17.5 1.8 0.0046 17.5 1.8 2.5 2 1 0 2 2 2 1 Recombinase zinc beta ribbon domain zf-TFIIB PF13453.6 gi|449066209|ref|YP_007433291.1| - 0.0052 16.1 1.7 0.0052 16.1 1.7 2.9 2 1 0 2 2 2 1 Transcription factor zinc-finger YhfH PF14149.6 gi|449066209|ref|YP_007433291.1| - 0.007 16.3 13.5 0.77 9.8 0.4 4.2 4 0 0 4 4 4 1 YhfH-like protein C1_1 PF00130.22 gi|449066209|ref|YP_007433291.1| - 0.0092 15.9 1.4 0.0092 15.9 1.4 2.8 2 1 1 3 3 3 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DpnI PF06044.12 gi|449066209|ref|YP_007433291.1| - 0.011 15.4 3.2 0.19 11.3 0.5 2.1 2 0 0 2 2 2 0 Dam-replacing family zf-tcix PF14952.6 gi|449066209|ref|YP_007433291.1| - 0.011 15.3 14.0 4.9 6.8 0.2 4.2 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding DNA_ligase_ZBD PF03119.16 gi|449066209|ref|YP_007433291.1| - 0.011 15.7 6.1 0.067 13.2 0.3 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_10 PF10058.9 gi|449066209|ref|YP_007433291.1| - 0.018 14.8 9.6 0.23 11.2 2.8 3.4 3 1 0 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Terminase_GpA PF05876.12 gi|449066209|ref|YP_007433291.1| - 0.019 13.6 6.6 0.3 9.6 0.7 2.1 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) zinc_ribbon_5 PF13719.6 gi|449066209|ref|YP_007433291.1| - 0.024 14.4 14.7 0.26 11.1 2.8 3.9 3 1 0 3 3 3 0 zinc-ribbon domain IBR PF01485.21 gi|449066209|ref|YP_007433291.1| - 0.032 14.4 12.2 0.05 13.8 2.7 3.0 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain Baculo_LEF5_C PF11792.8 gi|449066209|ref|YP_007433291.1| - 0.039 13.6 0.2 0.039 13.6 0.2 3.2 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-H2C2_2 PF13465.6 gi|449066209|ref|YP_007433291.1| - 0.047 14.2 14.9 0.5 10.9 0.6 4.1 4 0 0 4 4 4 0 Zinc-finger double domain eIF-5_eIF-2B PF01873.17 gi|449066209|ref|YP_007433291.1| - 0.052 13.4 7.5 0.54 10.1 0.3 2.5 1 1 2 3 3 3 0 Domain found in IF2B/IF5 zf-UBP PF02148.19 gi|449066209|ref|YP_007433291.1| - 0.052 13.9 3.5 0.64 10.4 0.7 2.5 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein PhnA_Zn_Ribbon PF08274.12 gi|449066209|ref|YP_007433291.1| - 0.055 13.4 5.3 14 5.8 0.3 3.5 3 1 0 3 3 3 0 PhnA Zinc-Ribbon GFA PF04828.14 gi|449066209|ref|YP_007433291.1| - 0.11 12.8 9.8 0.17 12.2 1.5 3.3 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.12 gi|449066209|ref|YP_007433291.1| - 0.17 11.9 8.8 0.22 11.5 1.0 2.8 2 1 0 2 2 2 0 zinc-ribbons DUF2752 PF10825.8 gi|449066209|ref|YP_007433291.1| - 0.18 11.9 0.0 0.18 11.9 0.0 3.1 4 0 0 4 4 3 0 Protein of unknown function (DUF2752) zf_UBZ PF18439.1 gi|449066209|ref|YP_007433291.1| - 0.2 11.3 13.0 3.5 7.3 0.2 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger HalOD2 PF18547.1 gi|449066209|ref|YP_007433291.1| - 0.21 11.5 10.0 3.6 7.6 0.2 3.7 3 1 1 4 4 4 0 Halobacterial output domain 2 Ribosomal_S27e PF01667.17 gi|449066209|ref|YP_007433291.1| - 0.27 11.0 9.8 3 7.6 1.0 3.8 2 2 0 2 2 2 0 Ribosomal protein S27 HypA PF01155.19 gi|449066209|ref|YP_007433291.1| - 0.32 11.0 9.1 2.1 8.4 1.8 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|449066209|ref|YP_007433291.1| - 0.38 10.8 11.9 8.6 6.5 0.0 4.0 2 2 2 4 4 4 0 Transposase zinc-binding domain Rubredoxin_2 PF18073.1 gi|449066209|ref|YP_007433291.1| - 0.43 10.3 15.7 2 8.2 0.3 4.2 4 0 0 4 4 4 0 Rubredoxin metal binding domain DUF3268 PF11672.8 gi|449066209|ref|YP_007433291.1| - 0.44 10.9 7.6 4.6 7.6 1.9 2.5 2 1 0 2 2 2 0 zinc-finger-containing domain DUF2310 PF10071.9 gi|449066209|ref|YP_007433291.1| - 0.51 9.6 3.8 0.32 10.2 0.2 1.9 2 0 0 2 2 2 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) zf-GRF PF06839.12 gi|449066209|ref|YP_007433291.1| - 0.57 10.3 10.3 2.3 8.4 0.2 3.0 2 1 0 2 2 2 0 GRF zinc finger UPF0547 PF10571.9 gi|449066209|ref|YP_007433291.1| - 0.61 10.2 16.6 2.9 8.1 0.1 4.2 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-ACC PF17848.1 gi|449066209|ref|YP_007433291.1| - 0.67 10.1 18.4 6.6 6.9 0.7 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Zn_Tnp_IS1 PF03811.13 gi|449066209|ref|YP_007433291.1| - 0.74 9.6 10.6 0.76 9.6 0.0 3.5 3 1 0 3 3 3 0 InsA N-terminal domain zf-HIT PF04438.16 gi|449066209|ref|YP_007433291.1| - 0.75 9.7 15.8 4 7.4 0.7 4.1 4 0 0 4 4 4 0 HIT zinc finger Desulfoferrod_N PF06397.12 gi|449066209|ref|YP_007433291.1| - 0.83 9.3 15.2 0.55 9.9 0.6 3.4 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain Rubredoxin PF00301.20 gi|449066209|ref|YP_007433291.1| - 0.85 9.7 12.9 4.7 7.3 0.2 4.1 4 0 0 4 4 4 0 Rubredoxin zinc_ribbon_13 PF09855.9 gi|449066209|ref|YP_007433291.1| - 0.93 9.7 11.6 7.8 6.8 0.9 4.0 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RecR PF02132.15 gi|449066209|ref|YP_007433291.1| - 0.96 9.1 9.3 4 7.1 0.2 3.8 4 0 0 4 4 4 0 RecR protein zf-ISL3 PF14690.6 gi|449066209|ref|YP_007433291.1| - 0.96 10.2 12.1 31 5.3 0.1 4.0 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cytochrom_c3_2 PF14537.6 gi|449066209|ref|YP_007433291.1| - 1 9.9 5.5 38 4.8 5.5 2.3 1 1 0 1 1 1 0 Cytochrome c3 zf-Mss51 PF13824.6 gi|449066209|ref|YP_007433291.1| - 1.3 9.1 12.3 4.3 7.5 1.9 3.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L37ae PF01780.19 gi|449066209|ref|YP_007433291.1| - 1.6 8.9 11.8 0.54 10.4 1.7 3.0 1 1 2 3 3 3 0 Ribosomal L37ae protein family zinc_ribbon_9 PF14369.6 gi|449066209|ref|YP_007433291.1| - 1.8 8.9 5.9 13 6.2 0.1 3.4 4 0 0 4 4 3 0 zinc-ribbon zf-C4_Topoisom PF01396.19 gi|449066209|ref|YP_007433291.1| - 1.9 8.4 17.3 1.7 8.5 5.4 3.5 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger A2L_zn_ribbon PF08792.10 gi|449066209|ref|YP_007433291.1| - 1.9 8.3 15.0 14 5.5 0.2 4.2 4 0 0 4 4 4 0 A2L zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|449066209|ref|YP_007433291.1| - 2.1 8.6 13.8 0.9 9.7 0.3 3.9 2 1 2 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like DUF3797 PF12677.7 gi|449066209|ref|YP_007433291.1| - 2.2 8.2 0.1 2.2 8.2 0.1 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) RNHCP PF12647.7 gi|449066209|ref|YP_007433291.1| - 2.4 8.2 9.7 1.6 8.7 1.5 3.0 2 2 0 2 2 2 0 RNHCP domain zf-RING_7 PF02591.15 gi|449066209|ref|YP_007433291.1| - 2.7 8.2 6.7 44 4.4 0.1 3.6 4 0 0 4 4 3 0 C4-type zinc ribbon domain Rpr2 PF04032.16 gi|449066209|ref|YP_007433291.1| - 3.1 8.1 10.6 57 4.1 10.6 2.9 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Ribosomal_L32p PF01783.23 gi|449066209|ref|YP_007433291.1| - 4 7.8 6.6 31 4.9 1.9 3.7 3 1 0 3 3 3 0 Ribosomal L32p protein family MqsA_antitoxin PF15731.5 gi|449066209|ref|YP_007433291.1| - 4.4 7.4 6.4 1.9 8.6 0.6 2.8 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA FdhE PF04216.12 gi|449066209|ref|YP_007433291.1| - 6.6 6.5 8.6 0.44 10.4 0.3 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation RNA_pol_L_2 PF13656.6 gi|449066211|ref|YP_007433293.1| - 1.9e-22 78.8 0.0 2.2e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|449066211|ref|YP_007433293.1| - 2.2e-10 39.8 0.0 3e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain ECR1_N PF14382.6 gi|449066212|ref|YP_007433294.1| - 3.4e-09 36.3 0.1 7.7e-09 35.2 0.1 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region OrfB_Zn_ribbon PF07282.11 gi|449066212|ref|YP_007433294.1| - 0.0011 18.8 0.5 0.0021 17.9 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|449066212|ref|YP_007433294.1| - 0.0077 16.2 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|449066212|ref|YP_007433294.1| - 0.011 15.9 2.7 0.04 14.0 2.7 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|449066212|ref|YP_007433294.1| - 0.011 15.1 4.6 0.21 11.1 5.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|449066212|ref|YP_007433294.1| - 0.011 15.7 0.3 0.018 15.1 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|449066212|ref|YP_007433294.1| - 0.014 15.1 0.9 0.03 14.1 0.9 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain EXOSC1 PF10447.9 gi|449066212|ref|YP_007433294.1| - 0.024 15.2 1.0 1.8 9.2 0.1 2.3 1 1 1 2 2 2 0 Exosome component EXOSC1/CSL4 zf-NADH-PPase PF09297.11 gi|449066212|ref|YP_007433294.1| - 0.029 14.0 1.2 0.052 13.2 1.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|449066212|ref|YP_007433294.1| - 0.029 13.9 0.5 0.069 12.7 0.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|449066212|ref|YP_007433294.1| - 0.031 14.4 1.2 0.073 13.2 1.2 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.6 gi|449066212|ref|YP_007433294.1| - 0.032 14.2 1.2 0.052 13.5 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 S1 PF00575.23 gi|449066212|ref|YP_007433294.1| - 0.048 14.0 0.1 0.18 12.1 0.1 2.0 1 1 0 1 1 1 0 S1 RNA binding domain NOB1_Zn_bind PF08772.11 gi|449066212|ref|YP_007433294.1| - 0.058 13.6 0.2 0.11 12.6 0.2 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like CDC24_OB3 PF17244.2 gi|449066212|ref|YP_007433294.1| - 0.11 12.2 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 C1_1 PF00130.22 gi|449066212|ref|YP_007433294.1| - 0.13 12.1 0.4 0.21 11.5 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TYW3 PF02676.14 gi|449066212|ref|YP_007433294.1| - 0.16 11.3 0.1 0.2 11.0 0.1 1.1 1 0 0 1 1 1 0 Methyltransferase TYW3 DNA_RNApol_7kD PF03604.13 gi|449066212|ref|YP_007433294.1| - 0.18 11.5 3.0 0.42 10.3 3.0 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DNA_ligase_ZBD PF03119.16 gi|449066212|ref|YP_007433294.1| - 0.59 10.2 4.0 4.4 7.4 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|449066212|ref|YP_007433294.1| - 0.76 9.6 4.1 15 5.4 0.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Diphthamide_syn PF01866.17 gi|449066213|ref|YP_007433295.1| - 6.7e-80 268.8 0.0 8.1e-80 268.5 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein EIF_2_alpha PF07541.12 gi|449066213|ref|YP_007433295.1| - 0.0092 16.1 0.2 0.036 14.2 0.0 2.0 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit Phage_Mu_Gam PF07352.12 gi|449066213|ref|YP_007433295.1| - 0.023 14.6 1.3 1.7 8.6 0.0 2.5 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein PhosphMutase PF10143.9 gi|449066213|ref|YP_007433295.1| - 0.072 13.0 0.2 0.55 10.1 0.1 2.3 2 1 0 2 2 2 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Acid_phosphat_B PF03767.14 gi|449066213|ref|YP_007433295.1| - 0.11 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Y1_Tnp PF01797.16 gi|449066213|ref|YP_007433295.1| - 0.11 12.6 0.4 2.1 8.5 0.1 2.6 3 0 0 3 3 3 0 Transposase IS200 like Ribosomal_L16 PF00252.18 gi|449066214|ref|YP_007433296.1| - 4.3e-33 114.1 0.3 5.1e-33 113.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ArfA PF03889.13 gi|449066214|ref|YP_007433296.1| - 0.056 12.9 0.1 0.16 11.4 0.1 1.7 2 0 0 2 2 2 0 Alternative ribosome-rescue factor A Pcc1 PF09341.10 gi|449066215|ref|YP_007433297.1| - 0.00024 21.2 0.2 0.00029 20.9 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF677 PF05055.12 gi|449066215|ref|YP_007433297.1| - 0.041 12.8 2.4 0.041 12.8 2.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) LPG_synthase_TM PF03706.13 gi|449066217|ref|YP_007433299.1| - 2e-19 70.3 18.2 3.3e-19 69.6 18.2 1.3 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region ThiF PF00899.21 gi|449066218|ref|YP_007433300.1| - 1.5e-58 198.1 0.2 1.9e-58 197.7 0.2 1.0 1 0 0 1 1 1 1 ThiF family Pyr_redox_2 PF07992.14 gi|449066218|ref|YP_007433300.1| - 0.0016 17.7 0.1 0.0024 17.2 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|449066218|ref|YP_007433300.1| - 0.0035 17.3 0.0 0.0063 16.5 0.0 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|449066218|ref|YP_007433300.1| - 0.0038 17.5 0.6 0.0089 16.3 0.1 1.8 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|449066218|ref|YP_007433300.1| - 0.013 14.9 0.3 0.043 13.2 0.1 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|449066218|ref|YP_007433300.1| - 0.025 14.2 0.1 0.048 13.3 0.0 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|449066218|ref|YP_007433300.1| - 0.033 14.7 0.6 0.17 12.5 0.6 2.1 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|449066218|ref|YP_007433300.1| - 0.05 13.2 0.2 0.077 12.6 0.2 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|449066218|ref|YP_007433300.1| - 0.054 12.7 0.1 0.073 12.3 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|449066218|ref|YP_007433300.1| - 0.055 13.3 0.2 0.097 12.6 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|449066218|ref|YP_007433300.1| - 0.13 12.5 0.8 0.36 11.1 0.6 1.8 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|449066218|ref|YP_007433300.1| - 0.2 11.2 0.1 0.28 10.7 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Transketolase_N PF00456.21 gi|449066219|ref|YP_007433301.1| - 1.4e-32 113.0 0.0 3.9e-32 111.5 0.0 1.6 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|449066219|ref|YP_007433301.1| - 3.5e-11 42.8 0.0 4.3e-09 36.0 0.0 2.1 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|449066219|ref|YP_007433301.1| - 3.6e-05 23.6 0.4 0.0009 19.0 0.4 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|449066219|ref|YP_007433301.1| - 0.00018 20.6 0.0 0.00025 20.1 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.10 gi|449066219|ref|YP_007433301.1| - 0.00047 19.1 0.1 0.0006 18.7 0.1 1.2 1 0 0 1 1 1 1 XFP N-terminal domain Transket_pyr PF02779.24 gi|449066220|ref|YP_007433302.1| - 3.5e-36 124.6 0.0 5.7e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|449066220|ref|YP_007433302.1| - 1.1e-30 106.0 0.0 1.5e-29 102.4 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|449066220|ref|YP_007433302.1| - 0.0005 20.3 0.1 0.0014 18.9 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Peptidase_M8 PF01457.16 gi|449066220|ref|YP_007433302.1| - 0.17 10.5 0.0 0.25 10.0 0.0 1.1 1 0 0 1 1 1 0 Leishmanolysin PDH PF02153.17 gi|449066221|ref|YP_007433303.1| - 7.2e-20 71.1 0.0 1.5e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.21 gi|449066221|ref|YP_007433303.1| - 8.6e-15 54.8 0.1 2.4e-14 53.4 0.1 1.8 1 0 0 1 1 1 1 Chorismate mutase type II F420_oxidored PF03807.17 gi|449066221|ref|YP_007433303.1| - 6.7e-10 39.4 0.0 1.5e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|449066221|ref|YP_007433303.1| - 2.2e-06 27.8 0.0 6.2e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|449066221|ref|YP_007433303.1| - 0.00013 21.5 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|449066221|ref|YP_007433303.1| - 0.00022 21.2 0.0 0.0012 18.8 0.0 2.1 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|449066221|ref|YP_007433303.1| - 0.00097 18.5 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|449066221|ref|YP_007433303.1| - 0.029 14.6 0.0 0.076 13.2 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|449066221|ref|YP_007433303.1| - 0.03 14.6 0.0 0.15 12.3 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|449066221|ref|YP_007433303.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|449066221|ref|YP_007433303.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|449066221|ref|YP_007433303.1| - 0.14 13.0 0.0 0.33 11.8 0.0 1.8 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold DAHP_synth_1 PF00793.20 gi|449066222|ref|YP_007433304.1| - 8.5e-72 241.3 0.0 1.1e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|449066222|ref|YP_007433304.1| - 6e-08 32.4 0.0 0.0063 16.0 0.0 2.8 2 1 0 3 3 3 2 NeuB family DHQ_synthase PF01761.20 gi|449066223|ref|YP_007433305.1| - 7.1e-91 304.0 0.0 8.6e-91 303.7 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|449066223|ref|YP_007433305.1| - 5.1e-06 26.4 0.0 1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|449066223|ref|YP_007433305.1| - 7.8e-06 24.9 0.0 0.00019 20.3 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Shikimate_dh_N PF08501.11 gi|449066224|ref|YP_007433306.1| - 2.3e-24 85.4 0.0 4.4e-24 84.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|449066224|ref|YP_007433306.1| - 3.2e-06 27.3 0.0 5.3e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|449066224|ref|YP_007433306.1| - 0.00038 20.2 0.0 0.00058 19.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|449066224|ref|YP_007433306.1| - 0.0012 19.2 0.0 0.0039 17.4 0.0 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|449066224|ref|YP_007433306.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|449066224|ref|YP_007433306.1| - 0.0021 17.4 0.0 0.0031 16.8 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|449066224|ref|YP_007433306.1| - 0.0024 18.4 0.2 0.0091 16.6 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|449066224|ref|YP_007433306.1| - 0.03 14.8 0.0 0.056 13.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 gi|449066224|ref|YP_007433306.1| - 0.032 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|449066224|ref|YP_007433306.1| - 0.19 11.1 0.0 0.33 10.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Chorismate_synt PF01264.21 gi|449066225|ref|YP_007433307.1| - 1.5e-125 418.2 0.0 1.8e-125 418.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.26 gi|449066226|ref|YP_007433308.1| - 1.1e-08 35.1 0.0 2.2e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|449066226|ref|YP_007433308.1| - 0.00088 19.6 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal EPSP_synthase PF00275.20 gi|449066227|ref|YP_007433309.1| - 1e-64 218.8 0.0 1.2e-64 218.6 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DHquinase_I PF01487.15 gi|449066228|ref|YP_007433310.1| - 1.4e-16 61.5 0.0 1.8e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Rieske PF00355.26 gi|449066229|ref|YP_007433311.1| - 6.6e-17 61.2 0.0 8.4e-17 60.9 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|449066229|ref|YP_007433311.1| - 1.1e-08 34.9 0.0 1.4e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain OKR_DC_1_N PF03709.15 gi|449066230|ref|YP_007433312.1| - 0.011 16.0 0.2 0.016 15.5 0.2 1.3 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Helicase_C_2 PF13307.6 gi|449066231|ref|YP_007433313.1| - 4.7e-25 88.7 0.1 1.2e-24 87.4 0.0 1.7 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|449066231|ref|YP_007433313.1| - 1.3e-15 57.5 0.6 6.6e-15 55.2 0.6 2.1 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|449066231|ref|YP_007433313.1| - 2.9e-08 33.9 0.4 1.6e-06 28.2 0.3 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|449066231|ref|YP_007433313.1| - 3e-05 23.8 0.0 0.064 13.0 0.0 3.5 4 0 0 4 4 4 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|449066231|ref|YP_007433313.1| - 0.032 14.5 0.7 3.8 7.8 0.3 2.9 2 1 1 3 3 3 0 AAA domain PhoH PF02562.16 gi|449066231|ref|YP_007433313.1| - 0.033 13.7 0.0 0.42 10.0 0.0 2.6 3 0 0 3 3 3 0 PhoH-like protein AAA_25 PF13481.6 gi|449066231|ref|YP_007433313.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Iron_permease PF04120.12 gi|449066231|ref|YP_007433313.1| - 2.4 7.9 5.5 1.7 8.4 1.5 2.3 1 1 1 2 2 2 0 Low affinity iron permease Thioredoxin_3 PF13192.6 gi|449066232|ref|YP_007433314.1| - 1.9e-09 37.4 0.0 4.2e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|449066232|ref|YP_007433314.1| - 0.0061 16.7 0.3 0.018 15.2 0.0 2.0 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|449066232|ref|YP_007433314.1| - 0.0088 16.2 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin TetR_C_26 PF17934.1 gi|449066232|ref|YP_007433314.1| - 0.013 15.9 1.0 0.036 14.4 0.0 2.2 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain DUF3242 PF11586.8 gi|449066232|ref|YP_007433314.1| - 1 9.1 5.8 2.1 8.1 0.1 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF3242) YhfH PF14149.6 gi|449066232|ref|YP_007433314.1| - 1.8 8.6 3.5 0.48 10.5 0.2 1.8 2 0 0 2 2 2 0 YhfH-like protein TusA PF01206.17 gi|449066233|ref|YP_007433315.1| - 1.5e-05 24.7 0.0 1.7e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Sulfurtransferase TusA Sod_Fe_C PF02777.18 gi|449066234|ref|YP_007433316.1| - 3.5e-33 113.8 0.4 5.1e-33 113.3 0.4 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|449066234|ref|YP_007433316.1| - 2.4e-29 101.6 0.1 2.4e-29 101.6 0.1 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain NTP_transferase PF00483.23 gi|449066235|ref|YP_007433317.1| - 1.6e-35 122.9 0.0 2.2e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|449066235|ref|YP_007433317.1| - 2.9e-10 40.7 0.0 4e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|449066235|ref|YP_007433317.1| - 4.1e-06 26.3 11.2 0.006 16.3 0.6 3.4 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|449066235|ref|YP_007433317.1| - 0.0044 16.8 0.0 0.0094 15.7 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|449066235|ref|YP_007433317.1| - 0.0054 15.7 0.0 0.0095 14.9 0.0 1.4 1 0 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|449066235|ref|YP_007433317.1| - 0.12 10.5 0.2 0.17 10.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) FecR PF04773.13 gi|449066236|ref|YP_007433318.1| - 0.04 14.5 0.2 0.54 10.9 0.0 2.2 2 0 0 2 2 2 0 FecR protein MetallophosN PF16371.5 gi|449066236|ref|YP_007433318.1| - 0.17 12.2 1.8 0.3 11.4 0.7 1.9 2 0 0 2 2 2 0 N terminal of Calcineurin-like phosphoesterase Thioredox_DsbH PF03190.15 gi|449066237|ref|YP_007433319.1| - 1.6e-62 210.3 0.0 2.6e-62 209.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|449066237|ref|YP_007433319.1| - 3.4e-15 56.0 0.1 6.6e-15 55.1 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|449066237|ref|YP_007433319.1| - 3.9e-05 23.6 0.2 8.3e-05 22.5 0.2 1.5 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|449066237|ref|YP_007433319.1| - 5.5e-05 23.6 0.0 0.00087 19.7 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin-like domain adh_short_C2 PF13561.6 gi|449066238|ref|YP_007433320.1| - 4e-27 95.3 0.0 5.7e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449066238|ref|YP_007433320.1| - 1.6e-21 76.7 0.2 2e-21 76.4 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449066238|ref|YP_007433320.1| - 0.00018 21.5 0.2 0.0003 20.8 0.2 1.3 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 gi|449066238|ref|YP_007433320.1| - 0.023 14.7 0.3 0.12 12.4 0.3 2.3 1 1 0 1 1 1 0 Zinc-binding dehydrogenase NucS PF01939.16 gi|449066239|ref|YP_007433321.1| - 2.5e-58 197.2 0.0 3e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS Cas_Cas4 PF01930.17 gi|449066239|ref|YP_007433321.1| - 0.0006 20.0 0.0 0.0015 18.7 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF83 UPF0102 PF02021.17 gi|449066239|ref|YP_007433321.1| - 0.069 13.4 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 DUF4263 PF14082.6 gi|449066239|ref|YP_007433321.1| - 0.11 12.8 0.0 0.27 11.5 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4263) Glycos_transf_2 PF00535.26 gi|449066240|ref|YP_007433322.1| - 3.8e-20 72.4 0.0 6.3e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|449066240|ref|YP_007433322.1| - 3.1e-13 49.6 0.0 5.1e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|449066240|ref|YP_007433322.1| - 1.1e-12 48.3 0.0 4.8e-12 46.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|449066240|ref|YP_007433322.1| - 0.025 14.0 0.0 0.035 13.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF1201 PF06716.11 gi|449066240|ref|YP_007433322.1| - 0.19 11.7 6.4 0.62 10.1 6.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1201) DUF3040 PF11239.8 gi|449066241|ref|YP_007433323.1| - 0.37 11.1 4.2 2.4 8.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) FixS PF03597.15 gi|449066241|ref|YP_007433323.1| - 5 6.9 16.8 0.62 9.8 1.5 2.2 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type LETM1 PF07766.13 gi|449066242|ref|YP_007433324.1| - 0.025 13.9 1.1 0.03 13.7 1.1 1.0 1 0 0 1 1 1 0 LETM1-like protein Presenilin PF01080.17 gi|449066242|ref|YP_007433324.1| - 0.71 8.6 5.9 0.86 8.3 5.9 1.1 1 0 0 1 1 1 0 Presenilin Sec62 PF03839.16 gi|449066242|ref|YP_007433324.1| - 0.72 9.3 3.7 0.92 9.0 3.7 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 CLN3 PF02487.17 gi|449066242|ref|YP_007433324.1| - 7.3 5.5 5.6 9.6 5.1 5.6 1.1 1 0 0 1 1 1 0 CLN3 protein AAA_31 PF13614.6 gi|449066243|ref|YP_007433325.1| - 5.3e-28 98.1 0.8 3.2e-26 92.3 0.8 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|449066243|ref|YP_007433325.1| - 8.4e-14 51.7 0.0 1.2e-13 51.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|449066243|ref|YP_007433325.1| - 5.2e-12 45.8 0.8 1.5e-11 44.2 0.8 1.7 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|449066243|ref|YP_007433325.1| - 1.7e-10 40.7 0.0 2.4e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|449066243|ref|YP_007433325.1| - 7.4e-07 28.6 0.1 9.5e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|449066243|ref|YP_007433325.1| - 0.00013 21.5 0.0 0.35 10.3 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ RuvB_N PF05496.12 gi|449066243|ref|YP_007433325.1| - 0.015 15.0 0.3 0.067 12.9 0.0 2.1 2 1 1 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain Fer4_NifH PF00142.18 gi|449066243|ref|YP_007433325.1| - 0.031 13.7 0.1 0.067 12.6 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|449066243|ref|YP_007433325.1| - 0.058 13.1 0.0 0.098 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain Latrotoxin_C PF15658.6 gi|449066243|ref|YP_007433325.1| - 0.095 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Latrotoxin C-terminal domain VirC1 PF07015.11 gi|449066243|ref|YP_007433325.1| - 0.14 11.5 0.1 0.25 10.6 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein CCG PF02754.16 gi|449066244|ref|YP_007433326.1| - 1.9e-13 50.4 0.2 3e-05 24.2 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|449066244|ref|YP_007433326.1| - 1e-11 45.1 5.3 2.3e-11 44.0 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449066244|ref|YP_007433326.1| - 2.3e-10 40.8 5.1 6.3e-10 39.5 5.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066244|ref|YP_007433326.1| - 4.4e-10 40.0 6.9 1e-09 38.8 6.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449066244|ref|YP_007433326.1| - 5.7e-07 29.1 11.0 0.0013 18.4 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|449066244|ref|YP_007433326.1| - 6.6e-07 29.4 6.2 2.1e-06 27.8 6.2 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449066244|ref|YP_007433326.1| - 1.5e-06 28.2 9.5 3e-05 24.0 10.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449066244|ref|YP_007433326.1| - 0.0001 22.2 8.5 0.0034 17.4 1.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449066244|ref|YP_007433326.1| - 0.00023 21.4 12.1 0.059 13.9 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|449066244|ref|YP_007433326.1| - 0.0011 18.9 13.8 0.012 15.6 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|449066244|ref|YP_007433326.1| - 0.0025 18.7 10.2 0.068 14.1 10.6 2.5 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|449066244|ref|YP_007433326.1| - 0.037 15.0 16.9 0.72 10.9 5.0 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|449066244|ref|YP_007433326.1| - 0.079 13.8 7.4 3.1 8.7 0.6 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|449066244|ref|YP_007433326.1| - 0.08 13.1 12.2 2.4 8.3 12.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|449066244|ref|YP_007433326.1| - 0.21 11.8 7.4 0.87 9.8 1.0 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|449066244|ref|YP_007433326.1| - 2.8 8.6 6.0 23 5.6 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I FAD-oxidase_C PF02913.19 gi|449066245|ref|YP_007433327.1| - 4.1e-52 177.3 0.0 5.8e-52 176.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|449066245|ref|YP_007433327.1| - 4.1e-29 101.1 0.2 6e-29 100.5 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_4 PF01565.23 gi|449066246|ref|YP_007433328.1| - 6.6e-17 61.6 0.0 1e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain TPP_enzyme_C PF02775.21 gi|449066247|ref|YP_007433329.1| - 1.3e-32 112.7 0.4 6.5e-32 110.4 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|449066247|ref|YP_007433329.1| - 1.9e-23 82.4 0.7 3.9e-23 81.4 0.7 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|449066248|ref|YP_007433330.1| - 5.8e-62 209.4 0.4 3.9e-61 206.7 0.0 2.0 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|449066248|ref|YP_007433330.1| - 1.6e-35 122.8 1.5 3.3e-35 121.7 0.8 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|449066248|ref|YP_007433330.1| - 1.9e-05 24.9 0.1 0.00012 22.3 0.0 2.6 2 1 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|449066248|ref|YP_007433330.1| - 0.00016 21.4 1.1 0.0081 15.8 0.6 2.8 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Nup35_RRM_2 PF14605.6 gi|449066248|ref|YP_007433330.1| - 0.13 12.3 0.0 1.5 8.9 0.0 2.7 3 0 0 3 3 3 0 Nup53/35/40-type RNA recognition motif DUF2164 PF09932.9 gi|449066248|ref|YP_007433330.1| - 0.14 12.3 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2164) Asp23 PF03780.13 gi|449066248|ref|YP_007433330.1| - 1.1 9.7 6.9 0.3 11.5 3.0 2.1 2 0 0 2 2 2 0 Asp23 family, cell envelope-related function SepF PF04472.12 gi|449066249|ref|YP_007433331.1| - 0.035 14.4 0.0 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 Cell division protein SepF CN_hydrolase PF00795.22 gi|449066250|ref|YP_007433332.1| - 2.5e-15 56.5 0.0 4.5e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase CBS PF00571.28 gi|449066251|ref|YP_007433333.1| - 4.6e-33 113.5 4.1 2e-10 41.0 0.0 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|449066251|ref|YP_007433333.1| - 1.8e-05 25.5 2.5 5.9e-05 23.8 2.5 1.9 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein PBP5_C PF07943.13 gi|449066251|ref|YP_007433333.1| - 0.16 12.2 1.2 0.5 10.6 0.0 2.4 3 1 1 4 4 4 0 Penicillin-binding protein 5, C-terminal domain Hist_deacetyl PF00850.19 gi|449066252|ref|YP_007433334.1| - 1.5e-73 247.9 0.0 2e-73 247.6 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain ATP-grasp PF02222.22 gi|449066253|ref|YP_007433335.1| - 6e-43 146.4 0.1 1.2e-42 145.3 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|449066253|ref|YP_007433335.1| - 6.1e-11 42.2 0.1 1.7e-10 40.8 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|449066253|ref|YP_007433335.1| - 3.5e-10 39.8 0.1 7.3e-10 38.7 0.1 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|449066253|ref|YP_007433335.1| - 3.7e-06 27.1 0.4 2e-05 24.7 0.4 2.1 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|449066253|ref|YP_007433335.1| - 7.1e-06 25.9 0.1 4.6e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LAL_C2 PF18603.1 gi|449066253|ref|YP_007433335.1| - 0.00071 19.7 0.1 0.0018 18.4 0.1 1.8 1 1 0 1 1 1 1 L-amino acid ligase C-terminal domain 2 ATPgrasp_ST PF14397.6 gi|449066253|ref|YP_007433335.1| - 0.0015 17.8 0.0 0.0098 15.2 0.1 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp PurK_C PF17769.1 gi|449066253|ref|YP_007433335.1| - 0.0017 18.0 0.0 0.0035 17.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_5 PF13549.6 gi|449066253|ref|YP_007433335.1| - 0.014 14.8 0.3 0.052 13.0 0.1 2.1 2 1 0 2 2 2 0 ATP-grasp domain TT1725 PF18324.1 gi|449066253|ref|YP_007433335.1| - 0.017 15.2 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein TT1725 Pyr_redox PF00070.27 gi|449066253|ref|YP_007433335.1| - 0.022 15.3 1.1 5.6 7.6 0.0 3.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase LAP2alpha PF11560.8 gi|449066253|ref|YP_007433335.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Lamina-associated polypeptide 2 alpha ATPgrasp_N PF18130.1 gi|449066253|ref|YP_007433335.1| - 0.14 12.7 0.1 1.1 9.8 0.1 2.5 2 0 0 2 2 2 0 ATP-grasp N-terminal domain TPD PF14811.6 gi|449066254|ref|YP_007433336.1| - 0.017 15.0 0.5 1.7 8.5 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function TPD sequence-motif DAO PF01266.24 gi|449066258|ref|YP_007433340.1| - 7.8e-12 45.4 0.0 2.7e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|449066258|ref|YP_007433340.1| - 0.021 15.0 0.1 0.092 13.0 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|449066258|ref|YP_007433340.1| - 0.035 14.0 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|449066258|ref|YP_007433340.1| - 0.081 13.5 0.0 0.21 12.2 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|449066258|ref|YP_007433340.1| - 0.13 12.5 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain MoCF_biosynth PF00994.24 gi|449066260|ref|YP_007433342.1| - 2.2e-32 111.7 0.1 2.5e-32 111.5 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain B12-binding PF02310.19 gi|449066260|ref|YP_007433342.1| - 0.052 13.6 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain DUF1286 PF06939.11 gi|449066261|ref|YP_007433343.1| - 9.2e-43 145.1 5.6 1.3e-42 144.6 5.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|449066261|ref|YP_007433343.1| - 3.7e-05 23.1 1.2 5.8e-05 22.5 1.2 1.4 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase OppC_N PF12911.7 gi|449066261|ref|YP_007433343.1| - 0.12 12.4 0.2 0.12 12.4 0.2 2.8 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C ATP-synt_I PF03899.15 gi|449066261|ref|YP_007433343.1| - 1.4 9.3 7.6 1.4 9.3 2.8 2.7 2 1 0 2 2 2 0 ATP synthase I chain PaREP1 PF05942.11 gi|449066262|ref|YP_007433344.1| - 2.9e-25 88.4 1.8 3.3e-25 88.3 1.8 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family IF2_N PF04760.15 gi|449066262|ref|YP_007433344.1| - 0.1 12.4 1.3 0.23 11.3 0.1 2.1 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region PaREP1 PF05942.11 gi|449066263|ref|YP_007433345.1| - 9.4e-26 90.0 2.4 1.1e-25 89.8 2.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DHDPS PF00701.22 gi|449066265|ref|YP_007433347.1| - 6.2e-41 140.0 0.0 7.1e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NuDC PF16273.5 gi|449066265|ref|YP_007433347.1| - 0.095 13.2 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Nuclear distribution C domain PfkB PF00294.24 gi|449066266|ref|YP_007433348.1| - 9.6e-41 140.0 0.0 1.1e-40 139.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Aldedh PF00171.22 gi|449066267|ref|YP_007433349.1| - 5.1e-111 371.4 0.0 6.1e-111 371.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|449066267|ref|YP_007433349.1| - 7.9e-08 31.8 0.0 1.2e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Rieske PF00355.26 gi|449066268|ref|YP_007433350.1| - 1.5e-09 37.7 0.0 1.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|449066268|ref|YP_007433350.1| - 0.087 12.8 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain MS_channel PF00924.18 gi|449066271|ref|YP_007433353.1| - 1e-26 93.8 3.1 1e-26 93.8 3.1 1.8 2 0 0 2 2 2 1 Mechanosensitive ion channel PHO4 PF01384.20 gi|449066271|ref|YP_007433353.1| - 1.3 8.0 8.4 3.6 6.5 8.6 1.3 1 1 0 1 1 1 0 Phosphate transporter family Linocin_M18 PF04454.12 gi|449066272|ref|YP_007433354.1| - 1.1e-16 60.9 0.0 1.7e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|449066272|ref|YP_007433354.1| - 0.0014 19.0 0.7 0.0014 19.0 0.7 1.6 2 0 0 2 2 2 1 Rubrerythrin Ferritin PF00210.24 gi|449066272|ref|YP_007433354.1| - 0.0032 17.4 0.7 0.0075 16.2 0.7 1.6 1 0 0 1 1 1 1 Ferritin-like domain Lys_export PF03956.13 gi|449066274|ref|YP_007433356.1| - 1.9e-45 154.7 17.7 1.9e-45 154.7 17.7 2.0 2 0 0 2 2 2 1 Lysine exporter LysO Sbt_1 PF05982.12 gi|449066274|ref|YP_007433356.1| - 0.0014 18.0 4.7 0.0014 18.0 4.7 2.6 2 1 1 3 3 3 2 Na+-dependent bicarbonate transporter superfamily DUF3270 PF11674.8 gi|449066274|ref|YP_007433356.1| - 7 6.9 8.5 0.2 11.9 0.4 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3270) MFS_1 PF07690.16 gi|449066275|ref|YP_007433357.1| - 6.3e-43 147.0 79.7 2e-38 132.2 42.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2031 PF09592.10 gi|449066275|ref|YP_007433357.1| - 0.033 13.7 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) DUF4167 PF13763.6 gi|449066276|ref|YP_007433358.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) US10 PF17617.2 gi|449066276|ref|YP_007433358.1| - 0.15 12.2 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Viral unique short region 10 PmbA_TldD PF01523.16 gi|449066277|ref|YP_007433359.1| - 9.7e-15 55.1 0.0 1.5e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase adh_short_C2 PF13561.6 gi|449066278|ref|YP_007433360.1| - 1.5e-62 211.2 0.3 2e-62 210.8 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449066278|ref|YP_007433360.1| - 1.2e-52 178.3 1.6 1.4e-52 178.0 1.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449066278|ref|YP_007433360.1| - 4.6e-13 49.5 0.1 6.8e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|449066278|ref|YP_007433360.1| - 6.2e-06 25.8 0.1 9.6e-06 25.2 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|449066278|ref|YP_007433360.1| - 0.00098 18.3 0.6 0.0011 18.1 0.6 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|449066278|ref|YP_007433360.1| - 0.001 18.3 0.0 0.0013 17.9 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|449066278|ref|YP_007433360.1| - 0.005 16.4 1.4 0.0074 15.9 0.8 1.6 2 0 0 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.6 gi|449066278|ref|YP_007433360.1| - 0.0052 16.7 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 gi|449066278|ref|YP_007433360.1| - 0.0064 15.8 0.2 0.21 10.9 0.0 2.4 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|449066278|ref|YP_007433360.1| - 0.017 14.5 0.2 0.036 13.4 0.2 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|449066278|ref|YP_007433360.1| - 0.05 13.9 0.1 0.13 12.6 0.1 1.7 2 0 0 2 2 2 0 TrkA-N domain OTCace PF00185.24 gi|449066278|ref|YP_007433360.1| - 0.051 13.7 0.1 0.11 12.6 0.1 1.5 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HAD_2 PF13419.6 gi|449066279|ref|YP_007433361.1| - 6.8e-13 49.1 0.0 9.9e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449066279|ref|YP_007433361.1| - 1.3e-09 38.7 0.0 1.9e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase LisH PF08513.11 gi|449066279|ref|YP_007433361.1| - 0.00035 20.4 1.9 0.023 14.6 0.3 2.6 2 0 0 2 2 2 1 LisH Hydrolase_6 PF13344.6 gi|449066279|ref|YP_007433361.1| - 0.026 14.6 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|449066279|ref|YP_007433361.1| - 0.046 13.8 0.0 0.088 12.9 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like LisH_2 PF16045.5 gi|449066279|ref|YP_007433361.1| - 0.27 10.3 1.8 4.5 6.4 0.2 2.4 2 0 0 2 2 2 0 LisH Radical_SAM PF04055.21 gi|449066280|ref|YP_007433362.1| - 4e-15 56.6 0.0 1.2e-13 51.8 0.0 2.7 3 0 0 3 3 3 1 Radical SAM superfamily Yip1 PF04893.17 gi|449066281|ref|YP_007433363.1| - 0.14 11.8 26.5 0.22 11.2 26.5 1.3 1 0 0 1 1 1 0 Yip1 domain TctB PF07331.11 gi|449066281|ref|YP_007433363.1| - 0.57 10.5 19.3 0.91 9.8 19.3 1.4 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF1129 PF06570.11 gi|449066281|ref|YP_007433363.1| - 2.5 7.5 16.4 7 6.1 14.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Cation_efflux PF01545.21 gi|449066282|ref|YP_007433364.1| - 5.2e-17 62.2 23.6 6.4e-17 61.9 23.6 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|449066282|ref|YP_007433364.1| - 0.0015 18.6 0.9 0.014 15.5 0.5 2.2 1 1 1 2 2 2 1 Dimerisation domain of Zinc Transporter Vma12 PF11712.8 gi|449066282|ref|YP_007433364.1| - 4.4 7.4 6.0 4.6 7.3 2.2 2.2 1 1 1 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Citrate_synt PF00285.21 gi|449066283|ref|YP_007433365.1| - 2.4e-92 309.8 0.0 2.6e-92 309.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain DUF4325 PF14213.6 gi|449066283|ref|YP_007433365.1| - 0.05 13.3 0.1 0.9 9.3 0.0 2.7 3 0 0 3 3 3 0 STAS-like domain of unknown function (DUF4325) TraI_2_C PF07515.11 gi|449066283|ref|YP_007433365.1| - 0.074 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative conjugal transfer nickase/helicase TraI C-term CBS PF00571.28 gi|449066284|ref|YP_007433366.1| - 0.011 16.2 0.0 0.014 15.8 0.0 1.2 1 0 0 1 1 1 0 CBS domain PEP_mutase PF13714.6 gi|449066285|ref|YP_007433367.1| - 1.4e-55 188.3 0.1 1.6e-55 188.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|449066285|ref|YP_007433367.1| - 9.6e-14 50.7 0.2 1.4e-13 50.3 0.2 1.2 1 0 0 1 1 1 1 Isocitrate lyase family ComA PF02679.15 gi|449066285|ref|YP_007433367.1| - 0.009 15.5 0.6 0.018 14.5 0.1 1.8 2 0 0 2 2 2 1 (2R)-phospho-3-sulfolactate synthase (ComA) MmgE_PrpD PF03972.14 gi|449066286|ref|YP_007433368.1| - 5.9e-94 315.1 0.0 7.6e-94 314.7 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family UBA_6 PF18039.1 gi|449066286|ref|YP_007433368.1| - 0.025 14.5 0.0 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 UBA-like domain IF2_N PF04760.15 gi|449066286|ref|YP_007433368.1| - 0.053 13.4 2.6 0.078 12.8 0.4 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Ldh_1_N PF00056.23 gi|449066287|ref|YP_007433369.1| - 1.7e-33 115.7 0.4 3.1e-33 114.8 0.4 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|449066287|ref|YP_007433369.1| - 8.6e-07 29.0 0.1 1.3e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain F420_oxidored PF03807.17 gi|449066287|ref|YP_007433369.1| - 0.0011 19.5 0.1 0.0046 17.5 0.0 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|449066287|ref|YP_007433369.1| - 0.0016 18.4 0.3 0.04 13.9 0.0 2.7 2 1 1 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|449066287|ref|YP_007433369.1| - 0.0023 18.1 0.0 0.0095 16.1 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|449066287|ref|YP_007433369.1| - 0.0023 17.8 0.0 0.005 16.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RuvA_C PF07499.13 gi|449066287|ref|YP_007433369.1| - 0.046 14.2 1.4 0.6 10.6 0.1 3.0 3 0 0 3 3 3 0 RuvA, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|449066288|ref|YP_007433370.1| - 1.2e-31 109.4 0.0 1.9e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|449066288|ref|YP_007433370.1| - 6.6e-10 38.8 0.0 8.2e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|449066288|ref|YP_007433370.1| - 0.00057 20.0 0.1 0.00093 19.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EVE PF01878.18 gi|449066289|ref|YP_007433371.1| - 2.7e-18 66.4 0.0 3e-18 66.2 0.0 1.0 1 0 0 1 1 1 1 EVE domain Aminotran_5 PF00266.19 gi|449066290|ref|YP_007433372.1| - 2.7e-39 135.2 0.0 3.4e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V B12-binding PF02310.19 gi|449066290|ref|YP_007433372.1| - 0.03 14.3 0.0 0.088 12.9 0.0 1.8 1 0 0 1 1 1 0 B12 binding domain Nitroreductase PF00881.24 gi|449066291|ref|YP_007433373.1| - 1.2e-29 103.5 0.0 1.9e-29 102.9 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|449066291|ref|YP_007433373.1| - 1e-08 35.0 1.0 0.054 13.1 0.0 3.4 2 1 1 3 3 3 3 Putative TM nitroreductase DUF1104 PF06518.11 gi|449066291|ref|YP_007433373.1| - 0.052 13.9 0.1 0.089 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1104) Beta_lactamase3 PF17030.5 gi|449066291|ref|YP_007433373.1| - 0.12 11.5 1.1 0.13 11.5 0.0 1.5 2 0 0 2 2 2 0 Putative beta-lactamase-like family Aconitase_C PF00694.19 gi|449066293|ref|YP_007433375.1| - 1.5e-21 77.1 0.0 2.2e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|449066293|ref|YP_007433375.1| - 0.0011 18.7 1.8 0.065 12.8 1.8 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus IlvN PF07991.12 gi|449066293|ref|YP_007433375.1| - 0.0036 16.9 0.1 0.0054 16.3 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Aconitase PF00330.20 gi|449066294|ref|YP_007433376.1| - 3.8e-80 270.1 0.3 6.4e-78 262.8 0.3 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|449066294|ref|YP_007433376.1| - 3.9e-05 22.5 0.0 5.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) TatC PF00902.18 gi|449066295|ref|YP_007433377.1| - 5.1e-45 153.8 19.6 6.4e-45 153.5 19.6 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) GAS PF13851.6 gi|449066296|ref|YP_007433378.1| - 0.0018 17.6 7.9 0.0025 17.2 7.9 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding PRKG1_interact PF15898.5 gi|449066296|ref|YP_007433378.1| - 0.0091 16.9 4.7 0.012 16.5 4.7 1.2 1 0 0 1 1 1 1 cGMP-dependent protein kinase interacting domain CdvA PF18822.1 gi|449066296|ref|YP_007433378.1| - 0.016 15.0 4.3 1.2 9.0 0.4 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain SLATT_6 PF18169.1 gi|449066296|ref|YP_007433378.1| - 0.02 14.5 2.8 0.056 13.0 1.0 1.9 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 ArAE_1_C PF11728.8 gi|449066296|ref|YP_007433378.1| - 0.021 14.8 5.7 0.07 13.1 5.3 1.8 1 1 1 2 2 2 0 Putative aromatic acid exporter C-terminal domain bZIP_1 PF00170.21 gi|449066296|ref|YP_007433378.1| - 0.026 14.6 7.5 1.5 9.0 0.4 2.2 2 0 0 2 2 2 0 bZIP transcription factor PhoU_div PF01865.16 gi|449066296|ref|YP_007433378.1| - 0.029 13.7 0.7 0.04 13.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF47 STAT_alpha PF01017.20 gi|449066296|ref|YP_007433378.1| - 0.035 14.0 1.1 0.61 10.0 0.1 2.0 2 0 0 2 2 2 0 STAT protein, all-alpha domain Bac_RepA_C PF18008.1 gi|449066296|ref|YP_007433378.1| - 0.038 14.3 0.6 0.038 14.3 0.6 1.8 1 1 1 2 2 2 0 Replication initiator protein A C-terminal domain Lipoprotein_3 PF00938.17 gi|449066296|ref|YP_007433378.1| - 0.042 14.0 2.3 2.7 8.3 0.5 2.1 1 1 1 2 2 2 0 Lipoprotein Dynactin_p22 PF07426.11 gi|449066296|ref|YP_007433378.1| - 0.052 13.4 5.7 1.3 8.8 0.9 2.1 2 0 0 2 2 2 0 Dynactin subunit p22 PspA_IM30 PF04012.12 gi|449066296|ref|YP_007433378.1| - 0.052 13.1 1.4 0.79 9.3 0.1 2.0 2 0 0 2 2 2 0 PspA/IM30 family Sugarporin_N PF11471.8 gi|449066296|ref|YP_007433378.1| - 0.07 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension CdiI_2 PF18593.1 gi|449066296|ref|YP_007433378.1| - 0.075 13.7 1.7 0.47 11.1 0.2 2.0 1 1 1 2 2 2 0 CdiI immunity protein ACR_tran PF00873.19 gi|449066296|ref|YP_007433378.1| - 0.076 10.7 0.2 0.092 10.4 0.2 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family DUF948 PF06103.11 gi|449066296|ref|YP_007433378.1| - 0.11 12.7 2.2 3.1 8.1 2.0 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) BRE1 PF08647.11 gi|449066296|ref|YP_007433378.1| - 0.11 12.5 5.5 0.53 10.4 0.7 2.1 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF4140 PF13600.6 gi|449066296|ref|YP_007433378.1| - 0.12 12.9 2.6 1.8 9.0 2.6 2.1 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) SAB PF04382.13 gi|449066296|ref|YP_007433378.1| - 0.12 12.4 0.4 0.12 12.4 0.4 2.1 2 1 0 2 2 2 0 SAB domain Snapin_Pallidin PF14712.6 gi|449066296|ref|YP_007433378.1| - 0.12 12.8 5.2 1.5 9.3 0.4 2.2 1 1 0 2 2 2 0 Snapin/Pallidin HSBP1 PF06825.12 gi|449066296|ref|YP_007433378.1| - 0.13 12.1 2.7 0.17 11.8 0.8 2.0 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Fib_alpha PF08702.10 gi|449066296|ref|YP_007433378.1| - 0.13 12.4 6.2 0.2 11.8 6.2 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|449066296|ref|YP_007433378.1| - 0.14 11.5 3.2 0.32 10.3 3.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) AI-2E_transport PF01594.16 gi|449066296|ref|YP_007433378.1| - 0.15 11.2 0.3 0.25 10.5 0.1 1.4 1 1 0 1 1 1 0 AI-2E family transporter FlaC_arch PF05377.11 gi|449066296|ref|YP_007433378.1| - 0.15 12.5 8.7 1 9.8 0.6 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GTP-bdg_M PF16360.5 gi|449066296|ref|YP_007433378.1| - 0.15 12.6 0.6 0.15 12.6 0.6 2.2 2 0 0 2 2 2 0 GTP-binding GTPase Middle Region DivIC PF04977.15 gi|449066296|ref|YP_007433378.1| - 0.16 11.8 9.9 0.74 9.6 1.6 2.3 1 1 1 2 2 2 0 Septum formation initiator DUF1149 PF06619.11 gi|449066296|ref|YP_007433378.1| - 0.17 12.2 3.2 0.54 10.6 1.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1149) Prefoldin_2 PF01920.20 gi|449066296|ref|YP_007433378.1| - 0.2 11.7 7.5 0.39 10.7 7.5 1.4 1 1 0 1 1 1 0 Prefoldin subunit ZapB PF06005.12 gi|449066296|ref|YP_007433378.1| - 0.2 12.1 7.1 2.8 8.4 0.6 2.2 2 0 0 2 2 2 0 Cell division protein ZapB Mst1_SARAH PF11629.8 gi|449066296|ref|YP_007433378.1| - 0.35 11.0 5.0 9.4 6.4 0.2 2.4 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 Med21 PF11221.8 gi|449066296|ref|YP_007433378.1| - 0.53 10.5 5.3 4.6 7.5 0.8 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex V_ATPase_I PF01496.19 gi|449066296|ref|YP_007433378.1| - 0.63 7.9 4.4 0.75 7.6 4.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.8 gi|449066296|ref|YP_007433378.1| - 0.67 10.0 10.0 0.65 10.0 2.0 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Rad50_zn_hook PF04423.14 gi|449066296|ref|YP_007433378.1| - 0.76 9.7 4.8 0.86 9.5 0.5 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif FAM76 PF16046.5 gi|449066296|ref|YP_007433378.1| - 1.2 8.4 6.3 4.2 6.6 0.8 2.0 1 1 1 2 2 2 0 FAM76 protein Occludin_ELL PF07303.13 gi|449066296|ref|YP_007433378.1| - 1.2 9.8 6.7 36 5.1 6.9 2.2 1 1 0 1 1 1 0 Occludin homology domain Pox_A_type_inc PF04508.12 gi|449066296|ref|YP_007433378.1| - 1.3 9.0 13.5 0.23 11.4 1.9 2.8 3 0 0 3 3 2 0 Viral A-type inclusion protein repeat Prefoldin PF02996.17 gi|449066296|ref|YP_007433378.1| - 1.3 9.0 7.9 4.1 7.3 0.9 2.1 2 0 0 2 2 2 0 Prefoldin subunit WD40_alt PF14077.6 gi|449066296|ref|YP_007433378.1| - 1.6 8.6 6.6 0.26 11.2 1.3 2.2 2 1 1 3 3 2 0 Alternative WD40 repeat motif Spc24 PF08286.11 gi|449066296|ref|YP_007433378.1| - 3.4 7.9 9.5 4.6 7.5 1.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 XhlA PF10779.9 gi|449066296|ref|YP_007433378.1| - 3.9 7.7 6.9 1.3 9.3 1.0 2.4 2 0 0 2 2 2 0 Haemolysin XhlA EMC3_TMCO1 PF01956.16 gi|449066296|ref|YP_007433378.1| - 4.5 7.0 7.0 12 5.6 1.0 2.0 1 1 1 2 2 2 0 Integral membrane protein EMC3/TMCO1-like PKcGMP_CC PF16808.5 gi|449066296|ref|YP_007433378.1| - 5.6 6.9 11.4 1 9.3 3.1 2.6 2 1 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase MttA_Hcf106 PF02416.16 gi|449066297|ref|YP_007433379.1| - 3.4e-11 42.3 6.3 1.9e-10 39.9 6.3 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4446 PF14584.6 gi|449066297|ref|YP_007433379.1| - 0.0025 17.8 1.2 0.0031 17.5 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4446) FAM184 PF15665.5 gi|449066297|ref|YP_007433379.1| - 0.004 17.0 7.0 0.0048 16.7 7.0 1.0 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B DUF4834 PF16118.5 gi|449066297|ref|YP_007433379.1| - 0.004 18.1 0.4 0.0053 17.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4834) DUF3573 PF12097.8 gi|449066297|ref|YP_007433379.1| - 0.03 13.2 0.9 0.03 13.2 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) DUF4140 PF13600.6 gi|449066297|ref|YP_007433379.1| - 0.038 14.4 2.9 0.049 14.1 2.9 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) HNOBA PF07701.14 gi|449066297|ref|YP_007433379.1| - 0.04 13.3 2.7 0.041 13.3 2.7 1.1 1 0 0 1 1 1 0 Heme NO binding associated DUF5320 PF17253.2 gi|449066297|ref|YP_007433379.1| - 0.072 14.2 2.6 0.084 14.0 2.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5320) CHD5 PF04420.14 gi|449066297|ref|YP_007433379.1| - 0.09 12.6 1.2 0.13 12.1 1.2 1.2 1 0 0 1 1 1 0 CHD5-like protein ZapB PF06005.12 gi|449066297|ref|YP_007433379.1| - 1.4 9.4 15.1 0.51 10.8 10.4 1.9 1 1 1 2 2 2 0 Cell division protein ZapB DUF4337 PF14235.6 gi|449066297|ref|YP_007433379.1| - 1.8 8.6 7.7 2.5 8.2 7.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Ribosomal_L29 PF00831.23 gi|449066297|ref|YP_007433379.1| - 3.2 7.8 13.7 1 9.4 5.8 2.1 1 1 1 2 2 2 0 Ribosomal L29 protein ABC_tran PF00005.27 gi|449066298|ref|YP_007433380.1| - 1.1e-28 100.4 0.0 1.6e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449066298|ref|YP_007433380.1| - 4.7e-06 26.6 2.4 0.028 14.2 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|449066298|ref|YP_007433380.1| - 0.0012 19.3 0.3 0.0031 17.9 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|449066298|ref|YP_007433380.1| - 0.0015 18.4 0.1 0.0029 17.6 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|449066298|ref|YP_007433380.1| - 0.008 16.1 0.2 0.02 14.8 0.1 1.9 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|449066298|ref|YP_007433380.1| - 0.01 16.1 0.2 0.051 13.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|449066298|ref|YP_007433380.1| - 0.017 14.9 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|449066298|ref|YP_007433380.1| - 0.027 13.9 0.1 4.6 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|449066298|ref|YP_007433380.1| - 0.031 14.3 0.1 0.099 12.7 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|449066298|ref|YP_007433380.1| - 0.052 14.1 0.0 0.08 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|449066298|ref|YP_007433380.1| - 0.057 12.2 0.0 6.6 5.4 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|449066298|ref|YP_007433380.1| - 0.076 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|449066298|ref|YP_007433380.1| - 0.12 12.3 0.3 0.51 10.2 0.1 1.9 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|449066298|ref|YP_007433380.1| - 0.12 11.5 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|449066298|ref|YP_007433380.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|449066299|ref|YP_007433381.1| - 1.6e-22 80.2 55.5 3.9e-14 52.8 17.9 3.2 2 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component CPSase_L_D2 PF02786.17 gi|449066300|ref|YP_007433382.1| - 2.4e-60 203.6 0.0 3.8e-60 203.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|449066300|ref|YP_007433382.1| - 2.4e-46 156.8 0.3 4.4e-46 156.0 0.3 1.4 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|449066300|ref|YP_007433382.1| - 8.8e-36 122.3 0.0 1.6e-35 121.5 0.0 1.4 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|449066300|ref|YP_007433382.1| - 6.4e-06 25.8 0.0 1.4e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|449066300|ref|YP_007433382.1| - 0.00043 19.9 0.1 0.0015 18.1 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|449066300|ref|YP_007433382.1| - 0.0022 18.0 0.0 0.006 16.6 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain Oxidored_nitro PF00148.19 gi|449066300|ref|YP_007433382.1| - 0.049 12.4 0.0 0.079 11.7 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ATP-grasp_5 PF13549.6 gi|449066300|ref|YP_007433382.1| - 0.097 12.1 0.0 0.36 10.2 0.0 1.9 2 0 0 2 2 2 0 ATP-grasp domain Biotin_lipoyl PF00364.22 gi|449066301|ref|YP_007433383.1| - 1.9e-18 66.0 6.3 4.1e-18 65.0 2.6 2.5 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|449066301|ref|YP_007433383.1| - 7.5e-16 57.7 8.7 1.8e-08 34.1 0.2 2.8 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|449066301|ref|YP_007433383.1| - 8.5e-08 32.9 3.1 0.001 19.7 0.1 3.1 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|449066301|ref|YP_007433383.1| - 2.7e-07 30.1 1.0 0.0054 16.0 0.1 3.0 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|449066301|ref|YP_007433383.1| - 0.00013 21.7 1.3 0.13 12.0 0.0 3.6 1 1 3 4 4 4 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|449066301|ref|YP_007433383.1| - 0.0011 18.8 1.2 0.0052 16.7 1.2 2.0 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain PYNP_C PF07831.13 gi|449066301|ref|YP_007433383.1| - 0.0012 18.4 0.4 0.23 11.1 0.0 2.5 1 1 1 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.11 gi|449066301|ref|YP_007433383.1| - 0.0022 17.5 0.4 0.0045 16.4 0.4 1.5 1 1 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 gi|449066301|ref|YP_007433383.1| - 0.0076 16.1 2.0 0.018 15.0 0.4 2.3 2 0 0 2 2 2 1 Glycine cleavage H-protein QRPTase_N PF02749.16 gi|449066301|ref|YP_007433383.1| - 0.011 15.7 0.2 0.85 9.7 0.0 3.1 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain YqfD PF06898.11 gi|449066301|ref|YP_007433383.1| - 0.029 13.2 3.2 0.57 9.0 0.5 2.4 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD DUF2118 PF09891.9 gi|449066301|ref|YP_007433383.1| - 0.04 13.9 1.0 0.09 12.7 0.9 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.22 gi|449066301|ref|YP_007433383.1| - 0.054 13.7 1.5 7.9 6.8 0.1 2.9 1 1 0 1 1 1 0 Peptidase family M23 Pox_vIL-18BP PF05566.12 gi|449066301|ref|YP_007433383.1| - 0.11 12.7 0.1 1.3 9.2 0.0 2.2 1 1 1 2 2 2 0 Orthopoxvirus interleukin 18 binding protein PS_Dcarbxylase PF02666.15 gi|449066301|ref|YP_007433383.1| - 0.13 11.8 0.2 0.25 10.8 0.2 1.7 1 1 0 1 1 1 0 Phosphatidylserine decarboxylase DnaJ_C PF01556.18 gi|449066301|ref|YP_007433383.1| - 0.13 12.3 1.5 0.44 10.6 0.3 2.0 2 0 0 2 2 2 0 DnaJ C terminal domain Carboxyl_trans PF01039.22 gi|449066302|ref|YP_007433384.1| - 2.7e-180 600.3 1.7 3e-180 600.1 1.7 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|449066302|ref|YP_007433384.1| - 0.00057 19.5 0.4 0.0022 17.5 0.0 2.0 2 1 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DEAD PF00270.29 gi|449066304|ref|YP_007433386.1| - 1.9e-23 83.1 0.0 7.5e-22 77.9 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|449066304|ref|YP_007433386.1| - 2.3e-12 47.2 0.0 1.2e-11 45.0 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|449066304|ref|YP_007433386.1| - 2.2e-09 37.6 0.2 1.5e-07 31.7 0.4 3.4 3 1 0 3 3 3 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|449066304|ref|YP_007433386.1| - 7e-05 23.4 0.3 0.0004 20.9 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|449066304|ref|YP_007433386.1| - 0.0065 16.3 0.0 0.023 14.5 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.23 gi|449066304|ref|YP_007433386.1| - 0.013 14.2 0.0 0.1 11.3 0.0 2.1 2 0 0 2 2 2 0 SNF2 family N-terminal domain Cdd1 PF11731.8 gi|449066304|ref|YP_007433386.1| - 0.051 13.8 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Pathogenicity locus ATPase PF06745.13 gi|449066304|ref|YP_007433386.1| - 0.062 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 KaiC HHH PF00633.23 gi|449066304|ref|YP_007433386.1| - 0.15 12.0 0.0 0.55 10.2 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif RHH_1 PF01402.21 gi|449066305|ref|YP_007433387.1| - 1e-09 38.0 0.1 1.5e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|449066305|ref|YP_007433387.1| - 0.01 16.0 0.2 0.015 15.5 0.2 1.4 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|449066305|ref|YP_007433387.1| - 0.05 13.5 0.2 0.1 12.5 0.2 1.6 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PHO4 PF01384.20 gi|449066306|ref|YP_007433388.1| - 2.8e-24 85.8 40.7 1.4e-22 80.2 38.1 2.9 1 1 0 1 1 1 1 Phosphate transporter family MazG-like PF12643.7 gi|449066306|ref|YP_007433388.1| - 0.076 13.3 0.5 29 5.0 0.0 3.2 3 0 0 3 3 3 0 MazG-like family PhoU_div PF01865.16 gi|449066307|ref|YP_007433389.1| - 2.9e-09 36.6 10.9 5.6e-09 35.6 10.9 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF47 TruB_C_2 PF16198.5 gi|449066307|ref|YP_007433389.1| - 0.014 15.6 2.4 0.037 14.2 0.3 2.7 2 1 1 3 3 3 0 tRNA pseudouridylate synthase B C-terminal domain FANCI_S1 PF14675.6 gi|449066307|ref|YP_007433389.1| - 0.015 14.9 4.8 0.13 11.8 4.8 2.0 1 1 0 1 1 1 0 FANCI solenoid 1 hnRNP_Q_AcD PF18360.1 gi|449066307|ref|YP_007433389.1| - 0.31 11.0 2.6 24 5.0 0.1 3.5 4 0 0 4 4 4 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain DUF763 PF05559.11 gi|449066308|ref|YP_007433390.1| - 5.6e-125 416.6 0.0 6.6e-125 416.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) CLAG PF03805.13 gi|449066308|ref|YP_007433390.1| - 0.38 8.3 2.0 0.51 7.8 2.0 1.1 1 0 0 1 1 1 0 Cytoadherence-linked asexual protein Metallophos_2 PF12850.7 gi|449066309|ref|YP_007433391.1| - 4.2e-10 40.1 0.0 1.5e-09 38.3 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|449066309|ref|YP_007433391.1| - 2.9e-09 37.8 0.2 3.5e-09 37.5 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase OrfB_Zn_ribbon PF07282.11 gi|449066310|ref|YP_007433392.1| - 1.2e-19 69.9 0.0 2.4e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvC_1 PF18516.1 gi|449066310|ref|YP_007433392.1| - 0.0012 18.0 0.1 3.1 6.9 0.0 3.0 3 0 0 3 3 3 2 RuvC nuclease domain OrfB_IS605 PF01385.19 gi|449066310|ref|YP_007433392.1| - 0.0085 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Probable transposase DZR PF12773.7 gi|449066310|ref|YP_007433392.1| - 0.025 14.6 0.8 0.044 13.8 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|449066310|ref|YP_007433392.1| - 0.036 13.8 2.0 5.6 6.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|449066310|ref|YP_007433392.1| - 0.071 12.5 2.4 3.2 7.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|449066310|ref|YP_007433392.1| - 0.082 12.6 4.4 0.6 9.9 4.9 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|449066310|ref|YP_007433392.1| - 1.3 9.1 3.9 21 5.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 GATase_4 PF13230.6 gi|449066311|ref|YP_007433393.1| - 7.7e-08 31.6 0.0 1e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Lactamase_B_2 PF12706.7 gi|449066312|ref|YP_007433394.1| - 8.2e-16 58.1 0.0 1.2e-15 57.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|449066312|ref|YP_007433394.1| - 2.5e-11 44.0 0.1 1.1e-10 41.9 0.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|449066312|ref|YP_007433394.1| - 0.00073 19.5 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PfkB PF00294.24 gi|449066313|ref|YP_007433395.1| - 4.7e-52 177.2 0.0 6.9e-52 176.6 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|449066313|ref|YP_007433395.1| - 4.3e-08 32.9 0.0 6.1e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|449066313|ref|YP_007433395.1| - 0.041 13.4 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|449066314|ref|YP_007433396.1| - 6.3e-82 274.6 0.4 1e-81 273.9 0.4 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|449066314|ref|YP_007433396.1| - 2.7e-14 53.2 0.1 2.7e-14 53.2 0.1 1.5 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|449066314|ref|YP_007433396.1| - 2.5e-08 33.7 0.1 4.6e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase PDDEXK_1 PF12705.7 gi|449066315|ref|YP_007433397.1| - 1.2e-13 51.6 1.6 4e-10 40.0 0.8 2.5 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|449066315|ref|YP_007433397.1| - 4.3e-09 36.7 0.0 5.7e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|449066315|ref|YP_007433397.1| - 8e-08 32.7 0.1 1.6e-07 31.7 0.1 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Chordopox_G2 PF05796.12 gi|449066315|ref|YP_007433397.1| - 0.09 12.2 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Chordopoxvirus protein G2 AHJR-like PF18743.1 gi|449066315|ref|YP_007433397.1| - 0.13 11.9 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 REase_AHJR-like Glyco_tranf_2_3 PF13641.6 gi|449066316|ref|YP_007433398.1| - 1.9e-33 116.3 0.0 2.5e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|449066316|ref|YP_007433398.1| - 7.6e-27 94.2 0.1 1.1e-26 93.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|449066316|ref|YP_007433398.1| - 7.8e-24 84.7 0.4 1.2e-23 84.0 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|449066316|ref|YP_007433398.1| - 7.6e-13 48.3 0.0 1.9e-12 47.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|449066316|ref|YP_007433398.1| - 2e-06 27.5 0.4 2.8e-05 23.8 0.4 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|449066316|ref|YP_007433398.1| - 7.7e-06 26.3 0.0 1.6e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 GNT-I PF03071.15 gi|449066316|ref|YP_007433398.1| - 0.0013 17.6 0.1 0.0019 17.0 0.1 1.1 1 0 0 1 1 1 1 GNT-I family DNA_PPF PF02916.15 gi|449066316|ref|YP_007433398.1| - 0.24 11.8 0.1 0.24 11.8 0.1 2.0 2 0 0 2 2 2 0 DNA polymerase processivity factor Lactamase_B PF00753.27 gi|449066318|ref|YP_007433400.1| - 8.1e-08 32.5 0.6 3.6e-06 27.1 0.5 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|449066318|ref|YP_007433400.1| - 1.1e-06 28.7 0.0 1.6e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|449066318|ref|YP_007433400.1| - 0.00014 21.4 0.0 0.00026 20.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DHH PF01368.20 gi|449066318|ref|YP_007433400.1| - 0.065 13.5 1.3 0.33 11.2 1.3 2.1 1 1 0 1 1 1 0 DHH family VIT1 PF01988.19 gi|449066319|ref|YP_007433401.1| - 2e-47 161.9 0.9 2.3e-47 161.7 0.9 1.0 1 0 0 1 1 1 1 VIT family DUF4781 PF16013.5 gi|449066319|ref|YP_007433401.1| - 0.043 12.6 0.0 0.29 9.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4781) DUF2207 PF09972.9 gi|449066319|ref|YP_007433401.1| - 0.37 9.5 3.5 0.23 10.2 2.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) AAA_assoc_C PF09821.9 gi|449066320|ref|YP_007433402.1| - 7.3e-28 97.5 0.8 8.3e-28 97.3 0.2 1.4 2 0 0 2 2 2 1 C-terminal AAA-associated domain Glyco_hydro_80 PF13647.6 gi|449066320|ref|YP_007433402.1| - 0.005 16.4 0.0 0.0068 15.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 80 of chitosanase A QueC PF06508.13 gi|449066321|ref|YP_007433403.1| - 6.6e-60 202.2 0.0 9.6e-60 201.7 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|449066321|ref|YP_007433403.1| - 1.6e-15 57.1 0.0 4.5e-15 55.6 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|449066321|ref|YP_007433403.1| - 4.7e-10 39.8 0.0 1e-09 38.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|449066321|ref|YP_007433403.1| - 2.5e-08 33.8 0.1 1.2e-07 31.5 0.1 2.1 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|449066321|ref|YP_007433403.1| - 9.5e-07 27.9 0.0 3.3e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|449066321|ref|YP_007433403.1| - 0.0022 17.8 0.0 0.0036 17.1 0.0 1.3 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.21 gi|449066321|ref|YP_007433403.1| - 0.013 15.1 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Glyco_transf_4 PF13439.6 gi|449066321|ref|YP_007433403.1| - 0.055 13.5 0.3 0.21 11.6 0.1 1.9 2 0 0 2 2 2 0 Glycosyltransferase Family 4 YjeF_N PF03853.15 gi|449066321|ref|YP_007433403.1| - 0.057 13.3 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus TpcC PF12642.7 gi|449066321|ref|YP_007433403.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Conjugative transposon protein TcpC TetR_C_25 PF17933.1 gi|449066321|ref|YP_007433403.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DEAD PF00270.29 gi|449066322|ref|YP_007433404.1| - 1.2e-23 83.8 0.0 1e-22 80.7 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|449066322|ref|YP_007433404.1| - 4.7e-21 75.2 0.0 4.2e-18 65.7 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|449066322|ref|YP_007433404.1| - 2e-11 44.5 0.1 8.6e-11 42.5 0.1 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|449066322|ref|YP_007433404.1| - 6.9e-07 29.4 0.0 1.9e-06 28.0 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|449066322|ref|YP_007433404.1| - 3.8e-05 23.1 0.0 6.8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_19 PF13245.6 gi|449066322|ref|YP_007433404.1| - 0.19 12.0 0.0 0.41 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain TauE PF01925.19 gi|449066323|ref|YP_007433405.1| - 1.2e-44 152.7 25.2 1.5e-44 152.4 25.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3482 PF11981.8 gi|449066323|ref|YP_007433405.1| - 0.42 10.0 0.0 0.42 10.0 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF3482) DUF1634 PF07843.11 gi|449066324|ref|YP_007433406.1| - 9.8e-27 93.0 8.6 1.1e-26 92.8 8.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Mem_trans PF03547.18 gi|449066324|ref|YP_007433406.1| - 0.015 13.7 0.4 0.015 13.7 0.4 1.7 1 1 1 2 2 2 0 Membrane transport protein Saf_2TM PF18303.1 gi|449066324|ref|YP_007433406.1| - 0.086 12.4 0.0 0.086 12.4 0.0 2.1 2 1 0 2 2 2 0 SAVED-fused 2TM effector domain Tetraspanin PF00335.20 gi|449066324|ref|YP_007433406.1| - 6.3 6.4 10.2 31 4.2 10.2 1.8 1 1 0 1 1 1 0 Tetraspanin family SdpI PF13630.6 gi|449066324|ref|YP_007433406.1| - 8.2 6.6 12.7 4.8e+02 1.0 12.7 2.5 1 1 0 1 1 1 0 SdpI/YhfL protein family Fig1 PF12351.8 gi|449066326|ref|YP_007433408.1| - 0.064 13.2 3.1 0.086 12.8 3.1 1.3 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 SecE PF00584.20 gi|449066326|ref|YP_007433408.1| - 1.1 9.2 7.1 7.5 6.6 2.2 2.4 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex Pox_A14 PF05767.12 gi|449066326|ref|YP_007433408.1| - 1.2 9.3 8.8 0.27 11.4 5.6 1.7 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 DUF2207 PF09972.9 gi|449066326|ref|YP_007433408.1| - 2.6 6.7 6.7 3.6 6.2 6.7 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SNARE_assoc PF09335.11 gi|449066327|ref|YP_007433409.1| - 6.6e-17 62.1 5.6 6.6e-17 62.1 5.6 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF1981 PF09324.10 gi|449066328|ref|YP_007433410.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1981) CBS PF00571.28 gi|449066329|ref|YP_007433411.1| - 1.4e-27 95.9 6.1 2.8e-13 50.1 0.7 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|449066329|ref|YP_007433411.1| - 0.034 14.4 0.5 0.31 11.4 0.1 2.3 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain GTP_cyclohydro2 PF00925.20 gi|449066329|ref|YP_007433411.1| - 0.15 11.6 0.0 8.7 5.9 0.0 2.0 1 1 1 2 2 2 0 GTP cyclohydrolase II ATPase_2 PF01637.18 gi|449066330|ref|YP_007433412.1| - 3.5e-11 43.5 0.3 6.6e-11 42.6 0.3 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|449066330|ref|YP_007433412.1| - 1.2e-10 41.5 0.1 4.9e-10 39.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|449066330|ref|YP_007433412.1| - 2.7e-07 30.9 0.0 6.8e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|449066330|ref|YP_007433412.1| - 4e-06 27.3 0.0 7.9e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|449066330|ref|YP_007433412.1| - 0.012 15.9 0.2 0.097 13.0 0.2 2.2 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|449066330|ref|YP_007433412.1| - 0.017 14.5 0.5 0.34 10.3 0.5 2.2 1 1 0 1 1 1 0 Bacterial TniB protein PhoH PF02562.16 gi|449066330|ref|YP_007433412.1| - 0.073 12.5 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein RuvA_C PF07499.13 gi|449066330|ref|YP_007433412.1| - 0.14 12.6 0.0 0.34 11.4 0.0 1.7 1 0 0 1 1 1 0 RuvA, C-terminal domain AAA_16 PF13191.6 gi|449066330|ref|YP_007433412.1| - 0.15 12.4 0.0 0.46 10.9 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain ETF PF01012.21 gi|449066331|ref|YP_007433413.1| - 6.1e-34 117.5 0.2 8.3e-34 117.1 0.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain POTRA PF07244.15 gi|449066331|ref|YP_007433413.1| - 0.074 13.6 2.3 3.5 8.3 0.3 3.7 2 2 0 2 2 2 0 Surface antigen variable number repeat Nucleoporin_FG2 PF15967.5 gi|449066331|ref|YP_007433413.1| - 0.15 10.5 0.1 0.24 9.9 0.1 1.2 1 0 0 1 1 1 0 Nucleoporin FG repeated region DUF3104 PF11302.8 gi|449066331|ref|YP_007433413.1| - 0.15 11.8 0.0 0.39 10.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3104) ETF_alpha PF00766.19 gi|449066332|ref|YP_007433414.1| - 1.3e-32 111.6 0.3 1.8e-31 108.0 0.1 2.4 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|449066332|ref|YP_007433414.1| - 1.1e-12 48.2 0.1 1.7e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Usp PF00582.26 gi|449066332|ref|YP_007433414.1| - 0.0037 17.8 0.2 0.073 13.6 0.0 2.6 2 0 0 2 2 2 1 Universal stress protein family Oxidored_nitro PF00148.19 gi|449066332|ref|YP_007433414.1| - 0.015 14.1 0.0 0.024 13.4 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase DUF2244 PF10003.9 gi|449066332|ref|YP_007433414.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DAO PF01266.24 gi|449066333|ref|YP_007433415.1| - 9.6e-15 55.0 1.3 9.2e-07 28.8 1.0 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|449066333|ref|YP_007433415.1| - 1.3e-13 51.1 0.0 2.1e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|449066333|ref|YP_007433415.1| - 9.1e-12 44.8 0.6 1.5e-11 44.1 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|449066333|ref|YP_007433415.1| - 1.4e-09 37.2 0.4 3.8e-09 35.7 0.1 1.8 2 1 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|449066333|ref|YP_007433415.1| - 5.8e-08 32.3 0.4 9.4e-06 25.1 0.5 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|449066333|ref|YP_007433415.1| - 7e-08 32.1 0.0 1.1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|449066333|ref|YP_007433415.1| - 4.3e-07 30.1 2.5 8.4e-06 25.9 1.6 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|449066333|ref|YP_007433415.1| - 1.6e-06 27.2 1.5 0.00024 20.1 0.0 2.9 2 1 1 3 3 3 1 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|449066333|ref|YP_007433415.1| - 3.9e-06 26.4 2.3 0.0049 16.2 1.8 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|449066333|ref|YP_007433415.1| - 7.5e-06 25.4 0.8 1.8e-05 24.1 0.8 1.6 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|449066333|ref|YP_007433415.1| - 2.6e-05 23.5 1.0 5.4e-05 22.5 1.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|449066333|ref|YP_007433415.1| - 3.8e-05 22.9 1.2 0.00039 19.6 1.2 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|449066333|ref|YP_007433415.1| - 0.0028 18.2 3.2 0.021 15.4 1.4 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|449066333|ref|YP_007433415.1| - 0.0072 15.6 0.8 0.017 14.4 0.3 1.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_10 PF13237.6 gi|449066334|ref|YP_007433416.1| - 8.8e-07 29.0 6.7 1.1e-06 28.6 6.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449066334|ref|YP_007433416.1| - 1.8e-06 28.0 4.5 2.5e-06 27.5 4.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066334|ref|YP_007433416.1| - 2e-06 28.3 5.4 0.015 15.9 2.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|449066334|ref|YP_007433416.1| - 5.7e-06 26.4 0.8 6.4e-06 26.2 0.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449066334|ref|YP_007433416.1| - 5.7e-06 26.1 9.2 0.00018 21.4 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|449066334|ref|YP_007433416.1| - 0.00018 21.4 10.8 0.0066 16.5 2.3 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|449066334|ref|YP_007433416.1| - 0.00019 21.5 4.6 0.00083 19.5 4.6 1.8 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_20 PF14691.6 gi|449066334|ref|YP_007433416.1| - 0.00052 19.8 5.8 0.0061 16.3 1.8 2.1 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|449066334|ref|YP_007433416.1| - 0.0055 17.6 3.0 2.5 9.1 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|449066334|ref|YP_007433416.1| - 0.014 15.5 8.8 0.94 9.7 3.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|449066334|ref|YP_007433416.1| - 0.014 15.8 2.3 1.8 9.0 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449066334|ref|YP_007433416.1| - 0.07 13.7 11.3 0.31 11.7 2.2 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|449066334|ref|YP_007433416.1| - 0.1 12.5 15.4 0.39 10.6 2.6 4.0 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|449066334|ref|YP_007433416.1| - 0.64 11.1 12.1 3.7 8.7 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Phosphorylase PF00343.20 gi|449066335|ref|YP_007433417.1| - 1.1e-12 47.2 0.1 1.2e-11 43.7 0.0 2.1 1 1 1 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|449066335|ref|YP_007433417.1| - 2.7e-09 36.8 0.0 6.7e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 MFS_1 PF07690.16 gi|449066336|ref|YP_007433418.1| - 9.5e-27 93.8 41.9 8.6e-21 74.2 23.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|449066336|ref|YP_007433418.1| - 2.5e-12 46.4 27.5 1.3e-11 44.1 27.5 1.9 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|449066336|ref|YP_007433418.1| - 4.3e-05 22.6 29.2 0.00025 20.1 16.7 2.4 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|449066336|ref|YP_007433418.1| - 0.01 14.3 8.3 0.23 9.8 2.6 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector TMEM72 PF16054.5 gi|449066336|ref|YP_007433418.1| - 1.8 8.2 8.0 0.24 11.1 1.8 2.5 3 0 0 3 3 3 0 Transmembrane protein family 72 DUF3463 PF11946.8 gi|449066337|ref|YP_007433419.1| - 8e-33 113.1 2.8 1.3e-32 112.4 2.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3463) Radical_SAM PF04055.21 gi|449066337|ref|YP_007433419.1| - 4.9e-16 59.6 0.0 1.9e-15 57.7 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|449066337|ref|YP_007433419.1| - 1.5e-08 35.0 0.1 5.9e-07 29.8 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|449066337|ref|YP_007433419.1| - 0.0012 19.0 1.1 0.012 15.7 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S single cluster domain MraZ PF02381.18 gi|449066337|ref|YP_007433419.1| - 0.078 13.0 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Deltameth_res PF16020.5 gi|449066338|ref|YP_007433420.1| - 0.13 12.2 0.3 3.1 7.7 0.1 2.2 2 0 0 2 2 2 0 Deltamethrin resistance ATPase_gene1 PF09527.10 gi|449066338|ref|YP_007433420.1| - 3 8.1 10.0 0.99 9.6 3.6 2.9 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter DUF1694 PF07997.11 gi|449066339|ref|YP_007433421.1| - 0.062 13.4 0.2 0.28 11.3 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1694) ALO PF04030.14 gi|449066339|ref|YP_007433421.1| - 0.12 12.1 0.1 14 5.4 0.0 2.1 2 0 0 2 2 2 0 D-arabinono-1,4-lactone oxidase FAD-oxidase_C PF02913.19 gi|449066340|ref|YP_007433422.1| - 6.8e-45 153.7 0.0 1.1e-44 153.0 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|449066340|ref|YP_007433422.1| - 8.2e-44 148.7 0.0 1.7e-43 147.7 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Phage_Arf PF17585.2 gi|449066340|ref|YP_007433422.1| - 0.021 14.8 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Accessory recombination function protein DUF4872 PF16169.5 gi|449066340|ref|YP_007433422.1| - 0.058 13.1 0.0 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4872) CTP_transf_like PF01467.26 gi|449066341|ref|YP_007433423.1| - 8.6e-14 51.9 0.0 1.2e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|449066341|ref|YP_007433423.1| - 0.029 13.6 0.0 2.1 7.5 0.0 2.2 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase DUF981 PF06168.11 gi|449066342|ref|YP_007433424.1| - 1.8e-54 184.5 19.8 2e-54 184.4 19.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Tetraspanin PF00335.20 gi|449066342|ref|YP_007433424.1| - 0.027 14.2 0.7 0.027 14.2 0.7 2.5 1 1 0 2 2 2 0 Tetraspanin family TssN PF17555.2 gi|449066342|ref|YP_007433424.1| - 0.19 11.1 15.8 0.19 11.1 9.3 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssN DUF3188 PF11384.8 gi|449066342|ref|YP_007433424.1| - 0.37 10.5 0.0 0.37 10.5 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF3188) HAD_2 PF13419.6 gi|449066343|ref|YP_007433425.1| - 9.9e-12 45.3 0.2 2.4e-11 44.1 0.2 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|449066343|ref|YP_007433425.1| - 0.0088 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like PSII PF00421.19 gi|449066343|ref|YP_007433425.1| - 0.03 13.0 0.1 0.04 12.6 0.1 1.1 1 0 0 1 1 1 0 Photosystem II protein Hydrolase PF00702.26 gi|449066343|ref|YP_007433425.1| - 0.042 14.1 0.0 1.3 9.3 0.0 2.1 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase SF3A3 PF16837.5 gi|449066343|ref|YP_007433425.1| - 0.069 13.7 0.4 3.9 8.1 0.0 2.5 1 1 1 2 2 2 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 MIase PF02426.16 gi|449066344|ref|YP_007433426.1| - 9.7e-18 64.1 0.0 1.2e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Muconolactone delta-isomerase GYD PF08734.11 gi|449066344|ref|YP_007433426.1| - 0.0045 16.9 0.0 0.0046 16.9 0.0 1.2 1 0 0 1 1 1 1 GYD domain SAM_Exu PF18609.1 gi|449066344|ref|YP_007433426.1| - 0.096 12.8 0.3 0.16 12.0 0.1 1.6 1 1 0 1 1 1 0 Exuperantia SAM-like domain AsnC_trans_reg PF01037.21 gi|449066344|ref|YP_007433426.1| - 0.12 12.4 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Smim3 PF17307.2 gi|449066345|ref|YP_007433427.1| - 5.6 6.5 14.2 0.16 11.5 4.2 2.9 2 1 1 3 3 3 0 Small integral membrane protein 3 SBP56 PF05694.11 gi|449066346|ref|YP_007433428.1| - 2.2e-205 682.8 0.0 2.5e-205 682.6 0.0 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Rad54_N PF08658.10 gi|449066346|ref|YP_007433428.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Rad54 N terminal Lactonase PF10282.9 gi|449066346|ref|YP_007433428.1| - 0.21 10.8 0.0 2 7.6 0.0 2.3 2 1 1 3 3 3 0 Lactonase, 7-bladed beta-propeller AMP-binding PF00501.28 gi|449066347|ref|YP_007433429.1| - 2.7e-90 303.0 0.0 3.4e-90 302.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449066347|ref|YP_007433429.1| - 2e-28 99.2 4.5 5e-28 97.9 1.3 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|449066347|ref|YP_007433429.1| - 3.4e-20 71.7 2.1 8e-20 70.5 2.1 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus BPL_LplA_LipB PF03099.19 gi|449066348|ref|YP_007433430.1| - 0.0017 18.2 0.1 0.0026 17.7 0.1 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Biotin_lipoyl PF00364.22 gi|449066349|ref|YP_007433431.1| - 1.6e-12 47.1 1.1 2.3e-12 46.6 1.1 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|449066349|ref|YP_007433431.1| - 3.2e-08 33.3 4.2 0.0006 19.6 1.7 2.1 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.19 gi|449066349|ref|YP_007433431.1| - 0.0033 17.3 0.2 0.0038 17.1 0.2 1.2 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_D23 PF16576.5 gi|449066349|ref|YP_007433431.1| - 0.0076 15.5 0.3 0.19 10.9 0.2 2.0 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|449066349|ref|YP_007433431.1| - 0.0077 16.0 0.2 3.1 7.6 0.1 2.0 1 1 1 2 2 2 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|449066349|ref|YP_007433431.1| - 0.013 15.5 0.3 0.021 14.8 0.2 1.4 1 1 0 1 1 1 0 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|449066349|ref|YP_007433431.1| - 0.017 15.8 1.5 3.5 8.4 0.1 2.2 2 0 0 2 2 2 0 HlyD family secretion protein Radical_SAM PF04055.21 gi|449066350|ref|YP_007433432.1| - 3.7e-16 59.9 0.1 7.4e-16 59.0 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily DUF3198 PF11433.8 gi|449066350|ref|YP_007433432.1| - 0.0019 18.0 0.4 0.009 15.9 0.1 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF3198) Myb_DNA-bind_7 PF15963.5 gi|449066350|ref|YP_007433432.1| - 0.0098 15.8 0.0 0.044 13.7 0.0 2.0 2 0 0 2 2 2 1 Myb DNA-binding like Phage_int_SAM_6 PF18644.1 gi|449066350|ref|YP_007433432.1| - 0.11 12.5 0.2 0.29 11.2 0.1 1.8 2 0 0 2 2 2 0 Phage integrase SAM-like domain LIAS_N PF16881.5 gi|449066350|ref|YP_007433432.1| - 0.11 12.9 0.1 0.3 11.5 0.1 1.7 1 0 0 1 1 1 0 N-terminal domain of lipoyl synthase of Radical_SAM family BPL_LplA_LipB PF03099.19 gi|449066351|ref|YP_007433433.1| - 4.6e-13 49.2 0.0 6.7e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF5325 PF17259.2 gi|449066352|ref|YP_007433434.1| - 0.024 14.5 0.9 0.032 14.1 0.9 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5325) MFS_1_like PF12832.7 gi|449066352|ref|YP_007433434.1| - 0.035 13.0 0.0 0.035 13.0 0.0 1.0 1 0 0 1 1 1 0 MFS_1 like family DUF4083 PF13314.6 gi|449066352|ref|YP_007433434.1| - 0.064 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) HpcH_HpaI PF03328.14 gi|449066353|ref|YP_007433435.1| - 2.3e-32 112.0 0.0 2e-30 105.6 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|449066353|ref|YP_007433435.1| - 2.3e-17 63.2 0.1 2.1e-09 37.0 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold RexA PF15969.5 gi|449066353|ref|YP_007433435.1| - 0.018 14.6 0.1 0.067 12.7 0.0 1.8 2 0 0 2 2 2 0 Intracellular sensor of Lambda phage, Abi component BH4 PF02180.17 gi|449066353|ref|YP_007433435.1| - 0.072 12.9 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 Bcl-2 homology region 4 PhoU PF01895.19 gi|449066353|ref|YP_007433435.1| - 0.085 13.3 2.1 7.6 7.1 0.2 2.7 2 1 0 2 2 2 0 PhoU domain 4HBT PF03061.22 gi|449066354|ref|YP_007433436.1| - 1.4e-15 57.4 0.0 1.7e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|449066354|ref|YP_007433436.1| - 1.1e-05 25.9 0.0 1.3e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|449066354|ref|YP_007433436.1| - 0.016 15.3 0.0 0.021 15.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) KH_7 PF17214.3 gi|449066355|ref|YP_007433437.1| - 0.016 15.1 0.4 0.033 14.1 0.1 1.6 2 0 0 2 2 2 0 KH domain ETF PF01012.21 gi|449066356|ref|YP_007433438.1| - 1.9e-89 298.4 0.2 7.5e-46 156.3 0.6 2.1 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|449066356|ref|YP_007433438.1| - 1.1e-32 111.9 0.1 3.1e-32 110.5 0.1 1.8 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain GatB_Yqey PF02637.18 gi|449066356|ref|YP_007433438.1| - 0.029 14.3 0.2 0.19 11.6 0.2 2.1 1 1 0 1 1 1 0 GatB domain DAO PF01266.24 gi|449066357|ref|YP_007433439.1| - 4.3e-14 52.9 1.0 1.4e-06 28.1 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|449066357|ref|YP_007433439.1| - 1.2e-10 40.7 5.1 2e-08 33.3 1.2 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|449066357|ref|YP_007433439.1| - 9.6e-10 38.4 1.0 1.3e-09 37.9 1.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|449066357|ref|YP_007433439.1| - 4.6e-09 35.9 4.5 1e-07 31.5 4.5 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|449066357|ref|YP_007433439.1| - 9.6e-09 34.8 1.7 1.9e-08 33.8 1.7 1.5 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|449066357|ref|YP_007433439.1| - 2.2e-07 30.3 3.2 6.5e-07 28.8 3.2 1.7 1 1 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|449066357|ref|YP_007433439.1| - 1.2e-06 28.0 3.0 5.1e-06 26.0 3.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|449066357|ref|YP_007433439.1| - 2.4e-06 27.7 0.1 4.6e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|449066357|ref|YP_007433439.1| - 2e-05 24.0 1.1 0.00042 19.7 1.5 2.3 2 1 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|449066357|ref|YP_007433439.1| - 6.4e-05 22.2 1.6 0.00017 20.8 1.6 1.6 1 1 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.17 gi|449066357|ref|YP_007433439.1| - 8.1e-05 22.0 0.1 0.00015 21.1 0.1 1.5 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|449066357|ref|YP_007433439.1| - 0.0002 20.7 0.1 0.00068 19.0 0.1 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|449066357|ref|YP_007433439.1| - 0.00037 21.0 1.2 0.28 11.8 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|449066357|ref|YP_007433439.1| - 0.059 13.4 1.8 0.94 9.4 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding ETF_QO PF05187.13 gi|449066358|ref|YP_007433440.1| - 9.8e-13 48.1 1.4 1.2e-12 47.9 1.4 1.0 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_9 PF13187.6 gi|449066358|ref|YP_007433440.1| - 3.2e-07 30.4 9.7 6e-07 29.5 9.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066358|ref|YP_007433440.1| - 1.6e-06 28.6 23.9 0.00022 21.7 13.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449066358|ref|YP_007433440.1| - 1.7e-06 27.6 18.3 3e-06 26.8 4.2 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|449066358|ref|YP_007433440.1| - 3.2e-06 26.9 12.4 0.00012 21.9 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|449066358|ref|YP_007433440.1| - 1.4e-05 25.1 12.3 4.5e-05 23.5 12.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449066358|ref|YP_007433440.1| - 2.2e-05 24.6 11.3 6.5e-05 23.1 2.0 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|449066358|ref|YP_007433440.1| - 0.00016 22.0 4.6 0.0041 17.5 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449066358|ref|YP_007433440.1| - 0.00022 21.1 19.3 0.0046 17.0 4.2 2.8 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449066358|ref|YP_007433440.1| - 0.0051 16.9 11.9 0.013 15.6 11.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|449066358|ref|YP_007433440.1| - 0.0058 17.5 12.1 0.25 12.4 3.7 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|449066358|ref|YP_007433440.1| - 0.012 16.5 0.9 0.012 16.5 0.9 3.0 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|449066358|ref|YP_007433440.1| - 0.031 14.8 2.1 0.031 14.8 2.1 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF723 PF05265.13 gi|449066358|ref|YP_007433440.1| - 5.7 7.0 7.3 1.3 9.0 3.5 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF723) FdhD-NarQ PF02634.15 gi|449066359|ref|YP_007433441.1| - 5e-74 248.9 0.0 5.8e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF1125 PF06563.11 gi|449066359|ref|YP_007433441.1| - 0.005 16.7 0.3 2 8.4 0.0 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF1125) FcoT PF10862.8 gi|449066359|ref|YP_007433441.1| - 0.075 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 FcoT-like thioesterase domain DUF1641 PF07849.11 gi|449066360|ref|YP_007433442.1| - 2.3e-13 49.7 0.2 3.8e-13 49.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Thioredoxin_14 PF18402.1 gi|449066360|ref|YP_007433442.1| - 0.023 14.7 0.1 0.028 14.4 0.2 1.2 1 1 0 1 1 1 0 Thioredoxin-like domain Radical_SAM PF04055.21 gi|449066360|ref|YP_007433442.1| - 0.085 13.2 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily Cdc6_C PF09079.11 gi|449066360|ref|YP_007433442.1| - 0.1 12.6 0.0 4.1 7.5 0.0 2.2 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain Molybdopterin PF00384.22 gi|449066361|ref|YP_007433443.1| - 1.6e-87 294.2 0.0 2.1e-87 293.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|449066361|ref|YP_007433443.1| - 6.7e-20 71.2 0.0 1.3e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|449066361|ref|YP_007433443.1| - 7.4e-19 67.5 0.3 7.4e-19 67.5 0.3 2.4 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|449066361|ref|YP_007433443.1| - 1.5e-12 47.4 0.1 3.8e-12 46.1 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|449066361|ref|YP_007433443.1| - 4e-11 42.3 17.7 4.4e-06 26.3 3.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|449066361|ref|YP_007433443.1| - 7.5e-10 38.2 0.9 7.5e-10 38.2 0.9 2.1 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_6 PF12837.7 gi|449066361|ref|YP_007433443.1| - 4.9e-09 35.9 13.0 0.00027 20.9 3.3 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449066361|ref|YP_007433443.1| - 1.3e-08 34.8 6.3 1.3e-08 34.8 6.3 2.4 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066361|ref|YP_007433443.1| - 2.9e-05 24.6 12.9 2.9e-05 24.6 12.9 3.8 1 1 4 5 5 5 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449066361|ref|YP_007433443.1| - 4.2e-05 23.6 17.2 0.012 15.7 0.2 3.1 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449066361|ref|YP_007433443.1| - 0.00011 22.3 23.2 0.00011 22.3 12.3 3.7 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer2 PF00111.27 gi|449066361|ref|YP_007433443.1| - 0.00014 21.7 0.2 0.00014 21.7 0.2 2.6 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain TPP_enzyme_M PF00205.22 gi|449066361|ref|YP_007433443.1| - 0.0003 20.5 0.3 0.71 9.6 0.0 3.2 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, central domain Fer4_16 PF13484.6 gi|449066361|ref|YP_007433443.1| - 0.0044 17.9 18.7 0.029 15.3 5.6 4.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|449066361|ref|YP_007433443.1| - 0.0057 17.1 10.9 0.0057 17.1 10.9 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449066361|ref|YP_007433443.1| - 0.0062 16.6 15.4 0.0084 16.2 5.8 3.3 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|449066361|ref|YP_007433443.1| - 0.0067 17.0 6.7 0.59 10.7 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|449066361|ref|YP_007433443.1| - 0.16 12.7 7.3 0.7 10.7 1.6 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|449066361|ref|YP_007433443.1| - 0.16 12.2 13.4 0.066 13.4 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449066361|ref|YP_007433443.1| - 0.45 11.1 19.6 0.18 12.4 11.5 3.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449066361|ref|YP_007433443.1| - 0.93 10.2 21.6 0.061 13.9 3.7 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|449066361|ref|YP_007433443.1| - 4 8.6 31.1 0.067 14.2 7.8 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain 2_5_RNA_ligase2 PF13563.6 gi|449066362|ref|YP_007433444.1| - 9.7e-11 41.8 0.0 1.5e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily FtsK_alpha PF17854.1 gi|449066362|ref|YP_007433444.1| - 0.096 12.8 0.1 0.41 10.8 0.0 2.0 2 0 0 2 2 2 0 FtsK alpha domain DUF2067 PF09840.9 gi|449066363|ref|YP_007433445.1| - 0.013 15.1 0.7 0.028 14.0 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) YkyA PF10368.9 gi|449066363|ref|YP_007433445.1| - 0.077 12.7 0.2 0.099 12.3 0.2 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein CBS PF00571.28 gi|449066363|ref|YP_007433445.1| - 0.077 13.5 1.5 1.6 9.2 1.6 2.3 1 1 1 2 2 2 0 CBS domain LPD14 PF18827.1 gi|449066363|ref|YP_007433445.1| - 0.23 11.7 3.0 7 6.9 0.3 2.0 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 14 PIN PF01850.21 gi|449066364|ref|YP_007433446.1| - 1e-15 58.3 1.3 1.1e-15 58.1 1.3 1.0 1 0 0 1 1 1 1 PIN domain TauE PF01925.19 gi|449066365|ref|YP_007433447.1| - 1.1e-50 172.6 37.6 1.2e-50 172.4 37.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CCG PF02754.16 gi|449066366|ref|YP_007433448.1| - 2.8e-29 101.2 0.1 2e-16 60.0 0.0 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|449066367|ref|YP_007433449.1| - 1e-08 35.5 6.3 1.8e-08 34.7 6.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449066367|ref|YP_007433449.1| - 1.3e-08 34.9 10.0 1e-07 32.0 11.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449066367|ref|YP_007433449.1| - 1e-06 29.2 6.7 2.2e-06 28.1 6.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066367|ref|YP_007433449.1| - 1.4e-06 28.7 6.2 2.3e-06 28.1 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449066367|ref|YP_007433449.1| - 2.4e-05 25.2 3.0 0.0024 18.7 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|449066367|ref|YP_007433449.1| - 0.0016 18.5 10.5 0.0064 16.6 10.7 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|449066367|ref|YP_007433449.1| - 0.01 16.7 3.8 0.7 10.8 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449066367|ref|YP_007433449.1| - 0.04 14.4 13.9 0.46 11.1 3.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449066367|ref|YP_007433449.1| - 0.046 13.9 9.1 0.26 11.5 9.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|449066367|ref|YP_007433449.1| - 0.048 13.4 1.1 0.048 13.4 1.1 2.2 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|449066367|ref|YP_007433449.1| - 0.17 12.0 13.2 0.13 12.5 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|449066367|ref|YP_007433449.1| - 0.49 10.3 13.6 0.74 9.7 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|449066367|ref|YP_007433449.1| - 4.4 7.5 8.4 0.76 10.0 0.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|449066369|ref|YP_007433451.1| - 1.7e-17 63.6 0.0 2.3e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|449066369|ref|YP_007433451.1| - 8.1e-09 35.2 0.3 1.7e-08 34.1 0.3 1.5 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|449066369|ref|YP_007433451.1| - 3.7e-08 32.9 0.0 0.00066 18.9 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|449066369|ref|YP_007433451.1| - 1.6e-07 30.8 0.2 6.1e-06 25.6 0.2 2.1 1 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|449066369|ref|YP_007433451.1| - 4.7e-07 29.5 0.0 9.3e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|449066369|ref|YP_007433451.1| - 5.5e-07 28.6 0.2 0.0011 17.7 0.1 2.1 1 1 1 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|449066369|ref|YP_007433451.1| - 8.7e-07 29.1 0.1 1.8e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|449066369|ref|YP_007433451.1| - 6.2e-06 25.6 0.0 9.3e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|449066369|ref|YP_007433451.1| - 9.1e-06 26.1 0.8 0.00066 20.2 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449066369|ref|YP_007433451.1| - 3.2e-05 23.3 0.7 0.00097 18.5 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|449066369|ref|YP_007433451.1| - 0.00011 21.7 0.1 0.0059 16.0 0.0 2.4 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|449066369|ref|YP_007433451.1| - 0.00012 21.8 0.7 0.00064 19.4 0.1 2.2 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|449066369|ref|YP_007433451.1| - 0.00054 20.0 0.0 0.14 12.1 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|449066369|ref|YP_007433451.1| - 0.0028 16.8 0.0 0.0039 16.3 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|449066369|ref|YP_007433451.1| - 0.025 13.9 0.1 0.052 12.8 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|449066369|ref|YP_007433451.1| - 0.042 13.2 0.2 0.069 12.5 0.2 1.3 1 0 0 1 1 1 0 ThiF family NAD_binding_7 PF13241.6 gi|449066369|ref|YP_007433451.1| - 0.08 13.4 0.1 0.18 12.3 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|449066369|ref|YP_007433451.1| - 0.1 11.8 0.1 1 8.5 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) CCG PF02754.16 gi|449066370|ref|YP_007433452.1| - 1.8e-08 34.5 0.0 9e-07 29.0 0.0 2.8 2 2 0 2 2 2 1 Cysteine-rich domain TusA PF01206.17 gi|449066371|ref|YP_007433453.1| - 7.7e-13 48.1 0.0 8.5e-13 47.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.14 gi|449066372|ref|YP_007433454.1| - 1.4e-12 47.5 0.0 1.8e-11 43.9 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DrsE PF02635.15 gi|449066373|ref|YP_007433455.1| - 2.2e-10 40.9 0.0 2.8e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|449066373|ref|YP_007433455.1| - 6.8e-07 29.3 0.6 2.3e-06 27.6 0.6 1.7 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DUF1641 PF07849.11 gi|449066374|ref|YP_007433456.1| - 1.1e-15 57.2 2.5 7e-14 51.4 0.1 3.5 3 1 1 4 4 4 2 Protein of unknown function (DUF1641) Syntaxin_2 PF14523.6 gi|449066374|ref|YP_007433456.1| - 0.00085 19.7 5.1 0.45 10.9 0.2 3.5 1 1 2 3 3 3 1 Syntaxin-like protein ARTD15_N PF18084.1 gi|449066374|ref|YP_007433456.1| - 0.041 14.1 2.0 0.72 10.1 0.1 3.1 2 1 1 3 3 3 0 ARTD15 N-terminal domain UbiD PF01977.16 gi|449066374|ref|YP_007433456.1| - 0.099 11.5 0.0 1.8 7.3 0.0 2.1 1 1 1 2 2 2 0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Birna_VP3 PF01767.16 gi|449066374|ref|YP_007433456.1| - 0.1 12.7 0.3 1 9.4 0.1 2.4 1 1 0 2 2 2 0 Birnavirus VP3 protein DUF773 PF05600.12 gi|449066374|ref|YP_007433456.1| - 0.19 10.4 4.3 3.6 6.2 1.0 2.2 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 DUF4527 PF15030.6 gi|449066374|ref|YP_007433456.1| - 0.24 10.8 1.7 2.5 7.5 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF4527) DUF3886 PF13025.6 gi|449066374|ref|YP_007433456.1| - 0.51 10.6 9.7 1.4 9.2 0.5 4.1 5 0 0 5 5 5 0 Protein of unknown function (DUF3886) DUF4795 PF16043.5 gi|449066374|ref|YP_007433456.1| - 2.3 7.8 9.4 2 8.0 1.5 2.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) Fer4_8 PF13183.6 gi|449066375|ref|YP_007433457.1| - 4.2e-08 33.5 14.2 2.3e-06 27.9 7.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449066375|ref|YP_007433457.1| - 9.8e-08 32.4 7.0 2.2e-07 31.3 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449066375|ref|YP_007433457.1| - 1.3e-06 28.4 6.2 2.6e-06 27.4 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449066375|ref|YP_007433457.1| - 2.1e-06 27.8 8.5 2.5e-05 24.3 9.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066375|ref|YP_007433457.1| - 2.4e-05 24.8 8.8 5.8e-05 23.6 9.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449066375|ref|YP_007433457.1| - 0.00053 20.9 8.4 0.0018 19.1 8.4 2.0 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|449066375|ref|YP_007433457.1| - 0.0021 18.1 13.4 0.025 14.7 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449066375|ref|YP_007433457.1| - 0.0026 18.1 10.7 0.0044 17.4 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain SHOCT PF09851.9 gi|449066375|ref|YP_007433457.1| - 0.047 13.4 2.6 0.061 13.1 1.2 2.0 1 1 1 2 2 2 0 Short C-terminal domain Fer4_20 PF14691.6 gi|449066375|ref|YP_007433457.1| - 0.056 13.2 6.4 0.077 12.8 0.3 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|449066375|ref|YP_007433457.1| - 0.14 12.3 10.4 1.6 8.9 10.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449066375|ref|YP_007433457.1| - 0.17 12.0 12.9 1.1 9.5 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|449066375|ref|YP_007433457.1| - 0.37 10.7 16.9 0.17 11.8 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|449066375|ref|YP_007433457.1| - 2 8.7 5.5 14 5.9 0.5 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|449066375|ref|YP_007433457.1| - 5.3 7.9 12.2 3.7 8.5 1.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain TusA PF01206.17 gi|449066376|ref|YP_007433458.1| - 2.9e-25 87.9 0.0 3.2e-25 87.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|449066376|ref|YP_007433458.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|449066377|ref|YP_007433459.1| - 1.9e-27 96.0 0.5 3.7e-26 91.8 0.5 1.9 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|449066377|ref|YP_007433459.1| - 5.2e-10 39.7 0.0 1.4e-09 38.3 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.10 gi|449066377|ref|YP_007433459.1| - 0.13 12.1 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Anti-repressor SinI DrsE PF02635.15 gi|449066378|ref|YP_007433460.1| - 4.9e-21 75.3 0.0 5.6e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|449066378|ref|YP_007433460.1| - 1.9e-14 53.8 0.6 3.9e-06 26.8 0.2 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family Pyr_redox_2 PF07992.14 gi|449066379|ref|YP_007433461.1| - 4e-44 151.0 2.0 5.4e-44 150.6 2.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449066379|ref|YP_007433461.1| - 9.3e-20 71.0 3.7 2e-15 57.1 0.1 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|449066379|ref|YP_007433461.1| - 2.9e-17 62.9 0.0 5.3e-16 58.8 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|449066379|ref|YP_007433461.1| - 1.7e-16 60.4 0.4 4.5e-16 59.0 0.4 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|449066379|ref|YP_007433461.1| - 1.5e-09 37.4 6.2 9.1e-05 21.7 0.2 3.5 3 1 1 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|449066379|ref|YP_007433461.1| - 2.5e-09 37.0 0.3 6.2e-07 29.1 0.0 2.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase DAO PF01266.24 gi|449066379|ref|YP_007433461.1| - 2.7e-09 37.1 8.5 0.011 15.4 0.0 3.2 2 1 1 3 3 3 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|449066379|ref|YP_007433461.1| - 3.8e-09 35.7 4.0 0.0033 16.2 0.4 4.2 3 1 1 4 4 4 3 HI0933-like protein Trp_halogenase PF04820.14 gi|449066379|ref|YP_007433461.1| - 7.2e-08 31.7 0.1 6e-05 22.1 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|449066379|ref|YP_007433461.1| - 2.7e-07 30.1 1.1 0.00045 19.5 0.0 2.8 3 0 0 3 3 3 2 Thi4 family FAD_binding_3 PF01494.19 gi|449066379|ref|YP_007433461.1| - 3.1e-07 30.0 0.7 0.00012 21.4 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|449066379|ref|YP_007433461.1| - 7.5e-07 28.6 5.5 0.00014 21.1 1.6 2.9 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|449066379|ref|YP_007433461.1| - 1.7e-06 28.1 2.1 0.0021 18.3 0.3 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|449066379|ref|YP_007433461.1| - 7.3e-05 22.2 2.9 0.035 13.4 0.2 2.6 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|449066379|ref|YP_007433461.1| - 0.00057 19.0 0.7 0.072 12.1 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein GDI PF00996.18 gi|449066379|ref|YP_007433461.1| - 0.0085 14.7 0.1 0.013 14.1 0.1 1.2 1 0 0 1 1 1 1 GDP dissociation inhibitor 3HCDH_N PF02737.18 gi|449066379|ref|YP_007433461.1| - 0.017 15.0 0.5 4.1 7.2 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|449066379|ref|YP_007433461.1| - 0.032 14.6 0.9 3.3 8.2 0.0 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|449066379|ref|YP_007433461.1| - 0.17 12.1 3.6 1.6 9.0 0.0 3.0 3 0 0 3 3 3 0 TrkA-N domain ApbA PF02558.16 gi|449066379|ref|YP_007433461.1| - 0.34 10.5 4.9 21 4.8 0.0 3.5 4 0 0 4 4 4 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|449066379|ref|YP_007433461.1| - 2.3 8.2 3.5 48 3.9 0.1 3.7 3 2 1 4 4 4 0 FAD-NAD(P)-binding Thioredoxin_3 PF13192.6 gi|449066381|ref|YP_007433463.1| - 9.1e-11 41.7 0.3 1.7e-10 40.8 0.1 1.6 2 0 0 2 2 2 1 Thioredoxin domain DUF836 PF05768.14 gi|449066381|ref|YP_007433463.1| - 0.0012 19.2 0.1 0.0022 18.3 0.1 1.5 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin PF00085.20 gi|449066381|ref|YP_007433463.1| - 0.0032 17.4 0.1 0.023 14.7 0.0 2.1 2 1 0 2 2 2 1 Thioredoxin Glutaredoxin PF00462.24 gi|449066381|ref|YP_007433463.1| - 0.032 14.4 0.5 0.075 13.3 0.5 1.6 1 0 0 1 1 1 0 Glutaredoxin Csd3_N PF18059.1 gi|449066381|ref|YP_007433463.1| - 0.037 14.5 0.8 0.25 11.9 0.0 2.2 1 1 1 2 2 2 0 Csd3 N-terminal Thioredoxin_9 PF14595.6 gi|449066381|ref|YP_007433463.1| - 0.088 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin PIN_5 PF08745.11 gi|449066382|ref|YP_007433464.1| - 0.0007 19.1 0.6 0.0014 18.1 0.3 1.5 1 1 0 2 2 2 1 PINc domain ribonuclease Peptidase_M23 PF01551.22 gi|449066383|ref|YP_007433465.1| - 1.3e-05 25.3 0.0 2.2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M23 Radical_SAM PF04055.21 gi|449066384|ref|YP_007433466.1| - 1.4e-12 48.3 0.4 5e-12 46.5 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|449066384|ref|YP_007433466.1| - 0.0055 17.0 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TarH PF02203.15 gi|449066384|ref|YP_007433466.1| - 0.083 12.8 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Tar ligand binding domain homologue YukD PF08817.10 gi|449066384|ref|YP_007433466.1| - 0.12 13.1 0.0 0.36 11.6 0.0 1.8 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein YukD Radical_SAM PF04055.21 gi|449066385|ref|YP_007433467.1| - 4.5e-12 46.7 0.1 1.4e-11 45.1 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily zf-ZPR1 PF03367.13 gi|449066385|ref|YP_007433467.1| - 0.024 14.5 0.2 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Fer4_12 PF13353.6 gi|449066385|ref|YP_007433467.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Amidohydro_2 PF04909.14 gi|449066385|ref|YP_007433467.1| - 0.2 11.4 0.0 0.33 10.7 0.0 1.3 1 1 0 1 1 1 0 Amidohydrolase BPL_LplA_LipB PF03099.19 gi|449066386|ref|YP_007433468.1| - 4.5e-06 26.6 0.0 1.5e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|449066386|ref|YP_007433468.1| - 3.9e-05 23.6 1.0 8.4e-05 22.5 0.1 2.0 2 1 0 2 2 2 1 Bacterial lipoate protein ligase C-terminus Picorna_P3A PF06363.11 gi|449066386|ref|YP_007433468.1| - 0.1 12.5 0.0 3.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Picornaviridae P3A protein AGOG PF09171.10 gi|449066387|ref|YP_007433469.1| - 0.013 14.9 0.8 0.014 14.8 0.8 1.1 1 0 0 1 1 1 0 N-glycosylase/DNA lyase PqqD PF05402.12 gi|449066387|ref|YP_007433469.1| - 0.064 13.6 0.1 0.11 12.8 0.1 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) SapB_1 PF05184.15 gi|449066387|ref|YP_007433469.1| - 0.18 11.8 1.1 0.24 11.4 0.3 1.7 2 0 0 2 2 2 0 Saposin-like type B, region 1 HAD_2 PF13419.6 gi|449066388|ref|YP_007433470.1| - 0.00039 20.6 0.0 0.00051 20.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF553 PF04473.12 gi|449066388|ref|YP_007433470.1| - 0.088 12.3 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Transglutaminase-like domain GCV_H PF01597.19 gi|449066389|ref|YP_007433471.1| - 1.4e-28 99.3 0.3 1.5e-28 99.1 0.3 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|449066389|ref|YP_007433471.1| - 0.028 14.3 0.1 0.09 12.6 0.0 1.9 1 1 1 2 2 2 0 Biotin-requiring enzyme DPBB_1 PF03330.18 gi|449066389|ref|YP_007433471.1| - 0.035 14.4 0.0 0.24 11.7 0.0 2.3 1 1 0 1 1 1 0 Lytic transglycolase GCV_H PF01597.19 gi|449066390|ref|YP_007433472.1| - 3.1e-42 143.3 1.2 3.7e-42 143.1 1.2 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|449066390|ref|YP_007433472.1| - 3.3e-05 23.6 1.7 9.6e-05 22.1 0.7 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|449066390|ref|YP_007433472.1| - 0.0057 16.6 1.2 0.0089 16.0 0.2 1.8 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|449066390|ref|YP_007433472.1| - 0.015 14.6 0.4 0.067 12.4 0.0 2.2 2 1 1 3 3 3 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion Nup54_C PF18437.1 gi|449066390|ref|YP_007433472.1| - 0.17 11.8 3.4 0.33 10.9 3.4 1.4 1 0 0 1 1 1 0 Nup54 C-terminal interacting domain Lip_prot_lig_C PF10437.9 gi|449066391|ref|YP_007433473.1| - 9.3e-05 22.3 0.9 0.00021 21.2 0.3 1.9 2 0 0 2 2 2 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|449066391|ref|YP_007433473.1| - 0.016 15.1 0.1 0.028 14.3 0.1 1.4 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family DUF3490 PF11995.8 gi|449066392|ref|YP_007433474.1| - 0.016 15.0 0.1 0.021 14.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3490) PhetRS_B1 PF18262.1 gi|449066392|ref|YP_007433474.1| - 0.08 13.2 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain OsmC PF02566.19 gi|449066393|ref|YP_007433475.1| - 3.7e-20 72.3 0.0 5.6e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF2080 PF09853.9 gi|449066393|ref|YP_007433475.1| - 0.046 13.5 0.0 3.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Putative transposon-encoded protein (DUF2080) E3_binding PF02817.17 gi|449066393|ref|YP_007433475.1| - 0.17 12.3 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 e3 binding domain SF3A3 PF16837.5 gi|449066394|ref|YP_007433476.1| - 0.081 13.5 0.1 0.26 11.8 0.0 1.8 2 1 0 2 2 2 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 HTH_24 PF13412.6 gi|449066395|ref|YP_007433477.1| - 4.3e-20 71.0 1.3 1.1e-11 44.1 0.2 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|449066395|ref|YP_007433477.1| - 6.9e-15 54.6 0.4 7.5e-08 32.1 0.1 2.7 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|449066395|ref|YP_007433477.1| - 6.9e-06 25.9 0.2 0.00026 20.9 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.11 gi|449066395|ref|YP_007433477.1| - 4.6e-05 23.4 0.0 0.12 12.4 0.0 2.9 3 0 0 3 3 3 2 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|449066395|ref|YP_007433477.1| - 0.00062 19.7 0.1 0.01 15.8 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|449066395|ref|YP_007433477.1| - 0.00087 19.1 0.1 0.072 13.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|449066395|ref|YP_007433477.1| - 0.0025 17.7 0.1 1 9.3 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|449066395|ref|YP_007433477.1| - 0.0049 16.9 0.0 1.2 9.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|449066395|ref|YP_007433477.1| - 0.0051 16.7 0.0 0.55 10.2 0.0 2.2 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|449066395|ref|YP_007433477.1| - 0.013 15.8 0.0 0.097 13.0 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_28 PF13518.6 gi|449066395|ref|YP_007433477.1| - 0.015 15.4 0.0 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|449066395|ref|YP_007433477.1| - 0.02 14.7 0.0 9.5 6.2 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.12 gi|449066395|ref|YP_007433477.1| - 0.072 12.9 0.1 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain HTH_9 PF08221.11 gi|449066395|ref|YP_007433477.1| - 0.22 11.7 0.2 6 7.1 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF1059 PF06348.11 gi|449066396|ref|YP_007433478.1| - 9.5e-24 83.4 0.4 1.1e-23 83.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DUF1059 PF06348.11 gi|449066397|ref|YP_007433479.1| - 2.6e-50 168.4 0.1 1.4e-25 89.2 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF1059) YlbE PF14003.6 gi|449066397|ref|YP_007433479.1| - 0.069 13.6 0.5 9.2 6.8 0.0 2.1 2 0 0 2 2 2 0 YlbE-like protein DUF3216 PF11505.8 gi|449066397|ref|YP_007433479.1| - 0.084 13.1 0.1 8.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3216) Helicase_C_3 PF13625.6 gi|449066397|ref|YP_007433479.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.6 1 1 1 2 2 2 0 Helicase conserved C-terminal domain LRRNT PF01462.18 gi|449066397|ref|YP_007433479.1| - 0.13 11.9 0.1 7.7 6.3 0.1 2.6 2 0 0 2 2 2 0 Leucine rich repeat N-terminal domain zf-GRF PF06839.12 gi|449066397|ref|YP_007433479.1| - 0.24 11.5 3.0 0.37 10.9 0.1 2.1 2 0 0 2 2 2 0 GRF zinc finger DUF3953 PF13129.6 gi|449066398|ref|YP_007433480.1| - 0.00053 19.7 0.3 0.00053 19.7 0.3 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF3953) DUF929 PF06053.11 gi|449066399|ref|YP_007433481.1| - 2e-58 197.7 14.3 3.1e-58 197.0 14.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Thioredoxin_2 PF13098.6 gi|449066399|ref|YP_007433481.1| - 0.049 14.1 0.0 0.28 11.6 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|449066399|ref|YP_007433481.1| - 0.092 12.9 0.0 0.27 11.5 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin-like DUF677 PF05055.12 gi|449066400|ref|YP_007433482.1| - 1.5 7.7 7.6 2.1 7.2 7.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) SprA-related PF12118.8 gi|449066400|ref|YP_007433482.1| - 2.8 7.0 8.8 4.5 6.3 8.8 1.3 1 0 0 1 1 1 0 SprA-related family Wzz PF02706.15 gi|449066400|ref|YP_007433482.1| - 6.9 7.1 10.3 6.3 7.2 7.7 2.2 1 1 1 2 2 2 0 Chain length determinant protein Amidase PF01425.21 gi|449066401|ref|YP_007433483.1| - 1.9e-101 340.2 0.0 2.6e-101 339.8 0.0 1.2 1 0 0 1 1 1 1 Amidase 7kD_DNA_binding PF02294.18 gi|449066402|ref|YP_007433484.1| - 5.1e-41 138.5 4.0 5.8e-41 138.3 4.0 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain Molybdopterin PF00384.22 gi|449066403|ref|YP_007433485.1| - 1.5e-07 30.8 0.0 0.00017 20.7 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|449066403|ref|YP_007433485.1| - 0.003 17.5 0.0 0.013 15.5 0.0 2.1 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain HTH_50 PF18024.1 gi|449066403|ref|YP_007433485.1| - 0.11 12.2 0.4 1.7 8.3 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain LuxC PF05893.14 gi|449066403|ref|YP_007433485.1| - 0.11 11.5 0.0 0.52 9.3 0.0 1.9 2 0 0 2 2 2 0 Acyl-CoA reductase (LuxC) Na_H_Exchanger PF00999.21 gi|449066404|ref|YP_007433486.1| - 1.3e-44 152.6 56.5 1.5e-44 152.4 56.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Cytochrome-c551 PF10643.9 gi|449066404|ref|YP_007433486.1| - 6.6 6.3 10.3 0.99 8.9 5.4 2.2 2 1 0 2 2 2 0 Photosystem P840 reaction-centre cytochrome c-551 PRP38 PF03371.15 gi|449066405|ref|YP_007433487.1| - 0.29 11.0 3.1 15 5.4 0.0 2.4 2 0 0 2 2 2 0 PRP38 family CoA_trans PF01144.23 gi|449066406|ref|YP_007433488.1| - 3e-23 82.3 0.0 3.9e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase CspB_prodomain PF18425.1 gi|449066406|ref|YP_007433488.1| - 0.024 14.6 0.3 0.062 13.3 0.1 1.7 1 1 0 1 1 1 0 Csp protease B prodomain 40S_S4_C PF16121.5 gi|449066406|ref|YP_007433488.1| - 0.15 11.7 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 40S ribosomal protein S4 C-terminus CoA_trans PF01144.23 gi|449066407|ref|YP_007433489.1| - 1.7e-29 102.8 0.0 2e-29 102.6 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase Hydantoinase_B PF02538.14 gi|449066408|ref|YP_007433490.1| - 1.1e-170 568.5 0.0 1.3e-170 568.3 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|449066409|ref|YP_007433491.1| - 4.6e-98 328.1 0.2 7e-96 320.9 0.1 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|449066409|ref|YP_007433491.1| - 7e-50 169.2 0.0 1.2e-49 168.4 0.0 1.4 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|449066409|ref|YP_007433491.1| - 0.0003 19.5 0.1 0.45 9.0 0.0 2.2 2 0 0 2 2 2 2 MutL protein ROK PF00480.20 gi|449066409|ref|YP_007433491.1| - 0.002 17.7 0.8 0.0037 16.8 0.1 1.8 3 0 0 3 3 3 1 ROK family BcrAD_BadFG PF01869.20 gi|449066409|ref|YP_007433491.1| - 0.046 13.2 0.0 0.16 11.4 0.0 1.9 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|449066409|ref|YP_007433491.1| - 0.22 11.1 0.1 0.64 9.5 0.0 1.7 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain Methyltransf_31 PF13847.6 gi|449066410|ref|YP_007433492.1| - 8.2e-14 51.7 0.0 1.3e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449066410|ref|YP_007433492.1| - 6.1e-12 46.1 0.0 1.2e-11 45.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|449066410|ref|YP_007433492.1| - 6e-11 43.0 0.0 9.3e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|449066410|ref|YP_007433492.1| - 2.3e-09 37.8 0.0 3.6e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|449066410|ref|YP_007433492.1| - 6.1e-08 32.4 0.0 7.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|449066410|ref|YP_007433492.1| - 1.6e-06 27.6 0.0 2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|449066410|ref|YP_007433492.1| - 3.1e-06 27.1 0.0 4.1e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|449066410|ref|YP_007433492.1| - 1.6e-05 24.5 0.0 2.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|449066410|ref|YP_007433492.1| - 0.00022 21.2 0.0 0.00029 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|449066410|ref|YP_007433492.1| - 0.0016 18.1 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|449066410|ref|YP_007433492.1| - 0.0026 17.6 0.0 0.0048 16.7 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.18 gi|449066410|ref|YP_007433492.1| - 0.0089 15.5 0.1 0.071 12.6 0.2 2.0 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain DOT1 PF08123.13 gi|449066410|ref|YP_007433492.1| - 0.02 14.4 0.1 0.062 12.8 0.0 1.7 1 1 1 2 2 2 0 Histone methylation protein DOT1 Methyltransf_4 PF02390.17 gi|449066410|ref|YP_007433492.1| - 0.045 13.2 0.0 0.083 12.4 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase NAS PF03059.16 gi|449066410|ref|YP_007433492.1| - 0.052 12.9 0.0 0.064 12.6 0.0 1.1 1 0 0 1 1 1 0 Nicotianamine synthase protein AdoMet_MTase PF07757.13 gi|449066410|ref|YP_007433492.1| - 0.077 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase MFS_1 PF07690.16 gi|449066411|ref|YP_007433493.1| - 1.5e-25 89.9 61.1 5.6e-21 74.9 28.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily SafA PF17073.5 gi|449066411|ref|YP_007433493.1| - 2.6 8.0 5.3 36 4.4 2.5 3.1 2 0 0 2 2 2 0 Two-component-system connector protein Peptidase_M1 PF01433.20 gi|449066412|ref|YP_007433494.1| - 1.1e-83 280.2 2.1 1.6e-83 279.6 2.1 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|449066412|ref|YP_007433494.1| - 4e-35 121.7 0.1 8.3e-35 120.7 0.1 1.6 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|449066412|ref|YP_007433494.1| - 3.9e-31 108.8 0.6 5.8e-31 108.2 0.6 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Aminopep PF10023.9 gi|449066412|ref|YP_007433494.1| - 0.053 12.9 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 Putative aminopeptidase DUF2807 PF10988.8 gi|449066412|ref|YP_007433494.1| - 0.18 11.6 0.1 0.36 10.6 0.1 1.5 1 0 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain tRNA-synt_1 PF00133.22 gi|449066413|ref|YP_007433495.1| - 2.2e-55 188.1 0.0 3.9e-54 183.9 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|449066413|ref|YP_007433495.1| - 1.5e-27 96.4 0.2 4.2e-14 52.1 0.0 3.5 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|449066413|ref|YP_007433495.1| - 7.5e-21 74.7 0.5 1.9e-20 73.4 0.5 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|449066413|ref|YP_007433495.1| - 2.2e-13 50.2 0.0 5e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|449066413|ref|YP_007433495.1| - 2.7e-13 49.9 1.2 3e-05 23.5 0.1 3.2 3 2 1 4 4 4 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|449066413|ref|YP_007433495.1| - 0.035 13.0 0.0 0.82 8.5 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) sCache_like PF16736.5 gi|449066413|ref|YP_007433495.1| - 0.042 13.9 0.4 0.1 12.7 0.4 1.6 1 0 0 1 1 1 0 Single Cache-like Radical_SAM PF04055.21 gi|449066414|ref|YP_007433496.1| - 3.9e-09 37.1 0.1 1.2e-08 35.5 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|449066414|ref|YP_007433496.1| - 4.2e-07 30.3 0.2 1.1e-06 29.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|449066414|ref|YP_007433496.1| - 0.00029 21.0 0.0 0.00081 19.5 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_M20 PF01546.28 gi|449066415|ref|YP_007433497.1| - 9.2e-36 123.5 0.0 1.2e-35 123.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|449066415|ref|YP_007433497.1| - 1.1e-16 60.7 0.0 2.2e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain PriX PF18689.1 gi|449066417|ref|YP_007433499.1| - 9.6e-41 138.1 2.1 1.5e-40 137.5 2.1 1.3 1 0 0 1 1 1 1 Primase X ATP_bind_3 PF01171.20 gi|449066418|ref|YP_007433500.1| - 2.8e-14 53.3 0.0 7.2e-14 51.9 0.0 1.6 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|449066418|ref|YP_007433500.1| - 0.00024 21.2 0.0 0.00047 20.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|449066418|ref|YP_007433500.1| - 0.0005 19.7 0.0 0.00082 19.0 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|449066418|ref|YP_007433500.1| - 0.00052 18.9 0.0 0.0011 17.8 0.0 1.5 1 1 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|449066418|ref|YP_007433500.1| - 0.0023 17.5 4.1 0.0074 15.8 1.4 2.7 2 0 0 2 2 2 1 RecR protein Usp PF00582.26 gi|449066418|ref|YP_007433500.1| - 0.0024 18.4 0.0 0.058 13.9 0.0 2.9 1 1 0 1 1 1 1 Universal stress protein family NAD_synthase PF02540.17 gi|449066418|ref|YP_007433500.1| - 0.0046 16.1 0.0 0.007 15.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|449066418|ref|YP_007433500.1| - 0.054 13.0 0.0 0.32 10.5 0.0 2.1 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC zinc_ribbon_15 PF17032.5 gi|449066418|ref|YP_007433500.1| - 0.061 14.1 2.8 0.14 13.0 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon family DUF2862 PF11061.8 gi|449066418|ref|YP_007433500.1| - 0.091 12.6 0.0 0.32 10.9 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) DZR PF12773.7 gi|449066418|ref|YP_007433500.1| - 4.8 7.3 7.9 0.49 10.5 1.2 2.4 3 0 0 3 3 3 0 Double zinc ribbon SfsA PF03749.13 gi|449066420|ref|YP_007433502.1| - 7.9e-39 132.7 0.0 1.2e-38 132.1 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|449066420|ref|YP_007433502.1| - 2.4e-16 59.6 0.1 4.7e-16 58.7 0.1 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain SIR2 PF02146.17 gi|449066421|ref|YP_007433503.1| - 3e-52 177.1 0.0 3.7e-52 176.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|449066421|ref|YP_007433503.1| - 0.037 13.7 0.0 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF3311 PF11755.8 gi|449066422|ref|YP_007433504.1| - 0.0024 17.8 2.5 0.0026 17.6 2.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF3687 PF12459.8 gi|449066422|ref|YP_007433504.1| - 0.031 13.8 2.2 0.031 13.8 2.2 2.4 2 2 1 3 3 3 0 D-Ala-teichoic acid biosynthesis protein SSF PF00474.17 gi|449066423|ref|YP_007433505.1| - 9.1e-14 51.1 31.9 9.1e-14 51.1 31.9 1.5 2 0 0 2 2 2 1 Sodium:solute symporter family Vma12 PF11712.8 gi|449066423|ref|YP_007433505.1| - 0.088 12.9 1.2 6.1 6.9 0.0 3.3 4 0 0 4 4 4 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF2203 PF09969.9 gi|449066424|ref|YP_007433506.1| - 4e-31 108.3 0.2 2.1e-30 105.9 0.2 1.8 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2203) DOCK_N PF16172.5 gi|449066424|ref|YP_007433506.1| - 0.12 11.2 0.1 0.14 11.1 0.1 1.0 1 0 0 1 1 1 0 DOCK N-terminus NAD_binding_2 PF03446.15 gi|449066425|ref|YP_007433507.1| - 6.9e-36 123.8 0.1 1.1e-35 123.2 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|449066425|ref|YP_007433507.1| - 2.4e-26 92.4 0.0 4.5e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|449066425|ref|YP_007433507.1| - 6.7e-07 29.8 0.0 2.6e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|449066425|ref|YP_007433507.1| - 4.4e-05 23.6 0.0 8.8e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|449066425|ref|YP_007433507.1| - 0.00048 19.5 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|449066425|ref|YP_007433507.1| - 0.0031 17.9 0.1 0.012 16.0 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GFO_IDH_MocA PF01408.22 gi|449066425|ref|YP_007433507.1| - 0.0077 17.1 0.0 0.018 15.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|449066425|ref|YP_007433507.1| - 0.038 13.6 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NfI_DNAbd_pre-N PF10524.9 gi|449066425|ref|YP_007433507.1| - 0.062 13.2 0.0 0.42 10.5 0.0 2.1 2 0 0 2 2 2 0 Nuclear factor I protein pre-N-terminus SchA_CurD PF04486.12 gi|449066425|ref|YP_007433507.1| - 0.13 12.4 0.0 0.39 10.8 0.0 1.7 1 1 0 1 1 1 0 SchA/CurD like domain Rdx PF10262.9 gi|449066427|ref|YP_007433509.1| - 2e-18 66.3 0.0 2.3e-18 66.2 0.0 1.0 1 0 0 1 1 1 1 Rdx family ABC2_membrane PF01061.24 gi|449066428|ref|YP_007433510.1| - 3.2e-14 52.9 14.7 3.2e-14 52.9 14.7 2.4 3 0 0 3 3 3 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|449066428|ref|YP_007433510.1| - 2.5e-08 33.5 31.6 4.6e-07 29.3 31.6 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|449066429|ref|YP_007433511.1| - 3.5e-32 111.8 0.0 5.6e-32 111.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449066429|ref|YP_007433511.1| - 1.7e-12 47.8 0.1 2.3e-07 30.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|449066429|ref|YP_007433511.1| - 2.9e-05 24.0 0.0 0.037 13.7 0.2 2.2 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|449066429|ref|YP_007433511.1| - 0.00013 21.5 0.3 0.18 11.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Thymidylate_kin PF02223.17 gi|449066429|ref|YP_007433511.1| - 0.00052 19.7 0.0 0.016 14.9 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase Rad17 PF03215.15 gi|449066429|ref|YP_007433511.1| - 0.0023 17.9 1.0 0.0046 16.9 0.3 2.1 2 1 0 2 2 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|449066429|ref|YP_007433511.1| - 0.0035 17.0 0.1 0.0084 15.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|449066429|ref|YP_007433511.1| - 0.0044 17.2 0.0 0.059 13.6 0.0 2.5 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|449066429|ref|YP_007433511.1| - 0.0057 17.2 7.0 0.1 13.1 6.9 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|449066429|ref|YP_007433511.1| - 0.0077 16.5 0.3 0.058 13.7 0.3 2.3 1 1 1 2 2 2 1 AAA domain SRP54 PF00448.22 gi|449066429|ref|YP_007433511.1| - 0.0092 15.6 0.2 0.017 14.8 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|449066429|ref|YP_007433511.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|449066429|ref|YP_007433511.1| - 0.016 15.5 0.0 0.024 15.0 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|449066429|ref|YP_007433511.1| - 0.051 12.2 0.2 0.45 9.1 0.1 2.1 2 1 0 2 2 2 0 AAA domain Ldh_1_C PF02866.18 gi|449066429|ref|YP_007433511.1| - 0.055 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain AAA_24 PF13479.6 gi|449066429|ref|YP_007433511.1| - 0.062 13.0 0.1 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|449066429|ref|YP_007433511.1| - 0.09 12.7 0.6 2.9 7.7 0.1 2.7 3 0 0 3 3 3 0 RsgA GTPase AAA PF00004.29 gi|449066429|ref|YP_007433511.1| - 0.094 13.1 2.5 0.95 9.9 2.3 2.6 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|449066429|ref|YP_007433511.1| - 0.11 12.2 0.1 1.9 8.2 0.1 2.2 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|449066429|ref|YP_007433511.1| - 0.12 12.7 0.0 0.17 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|449066429|ref|YP_007433511.1| - 0.13 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|449066429|ref|YP_007433511.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.7 gi|449066429|ref|YP_007433511.1| - 0.18 10.7 1.5 0.86 8.5 0.1 2.3 2 1 1 3 3 3 0 AAA-like domain ATP_bind_1 PF03029.17 gi|449066429|ref|YP_007433511.1| - 0.22 11.3 1.1 0.39 10.5 0.2 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF87 PF01935.17 gi|449066429|ref|YP_007433511.1| - 0.64 10.1 3.9 0.36 10.9 0.5 2.1 2 1 1 3 3 3 0 Helicase HerA, central domain AIRS PF00586.24 gi|449066430|ref|YP_007433512.1| - 1.6e-10 41.5 0.0 3.2e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|449066430|ref|YP_007433512.1| - 1.1e-09 38.6 0.0 1.8e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain NTP_transf_3 PF12804.7 gi|449066431|ref|YP_007433513.1| - 1.3e-09 38.6 0.0 4.3e-09 36.9 0.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|449066431|ref|YP_007433513.1| - 0.05 13.5 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 Cytidylyltransferase NTP_transferase PF00483.23 gi|449066431|ref|YP_007433513.1| - 0.057 13.0 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase CofC PF01983.16 gi|449066431|ref|YP_007433513.1| - 0.11 11.6 0.1 0.21 10.8 0.0 1.5 1 1 0 1 1 1 0 Guanylyl transferase CofC like DUF1614 PF07758.11 gi|449066432|ref|YP_007433514.1| - 8.3e-48 162.6 14.0 1.4e-47 161.9 14.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Pkr1 PF08636.10 gi|449066432|ref|YP_007433514.1| - 1.8 8.8 19.6 0.49 10.6 3.0 3.4 2 1 0 2 2 2 0 ER protein Pkr1 Syndecan PF01034.20 gi|449066432|ref|YP_007433514.1| - 6.8 6.7 6.4 1.1 9.2 0.1 2.9 3 0 0 3 3 3 0 Syndecan domain DUF4959 PF16323.5 gi|449066433|ref|YP_007433515.1| - 0.23 11.8 0.0 0.32 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4959) TP_methylase PF00590.20 gi|449066434|ref|YP_007433516.1| - 1.7e-45 155.6 0.7 2.2e-45 155.2 0.7 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|449066435|ref|YP_007433517.1| - 7e-35 120.9 0.0 7.9e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|449066436|ref|YP_007433518.1| - 1.6e-09 37.8 0.0 2.1e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|449066436|ref|YP_007433518.1| - 4.7e-09 36.3 0.6 1.2e-08 34.9 0.1 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.17 gi|449066436|ref|YP_007433518.1| - 2.2e-07 30.3 0.1 3e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase Cons_hypoth95 PF03602.15 gi|449066436|ref|YP_007433518.1| - 4e-07 29.8 0.0 5.1e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|449066436|ref|YP_007433518.1| - 1.7e-06 27.7 0.3 2.2e-06 27.3 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|449066436|ref|YP_007433518.1| - 6e-06 26.9 0.0 9.5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|449066436|ref|YP_007433518.1| - 8.3e-06 26.8 0.0 1.2e-05 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449066436|ref|YP_007433518.1| - 9.4e-06 25.1 0.0 1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|449066436|ref|YP_007433518.1| - 1.7e-05 24.4 0.0 4e-05 23.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain GidB PF02527.15 gi|449066436|ref|YP_007433518.1| - 2.6e-05 23.6 0.2 3.3e-05 23.3 0.2 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G GCD14 PF08704.10 gi|449066436|ref|YP_007433518.1| - 8.4e-05 22.4 0.0 0.00011 22.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.16 gi|449066436|ref|YP_007433518.1| - 0.0002 21.2 0.0 0.00023 21.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|449066436|ref|YP_007433518.1| - 0.00034 20.1 0.1 0.00093 18.7 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|449066436|ref|YP_007433518.1| - 0.0017 18.9 0.0 0.0029 18.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|449066436|ref|YP_007433518.1| - 0.0024 17.2 0.0 0.0039 16.5 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|449066436|ref|YP_007433518.1| - 0.0063 16.5 0.1 0.012 15.6 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|449066436|ref|YP_007433518.1| - 0.0074 16.1 0.0 0.0078 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|449066436|ref|YP_007433518.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Fibrillarin PF01269.17 gi|449066436|ref|YP_007433518.1| - 0.019 14.1 0.1 0.031 13.4 0.0 1.4 1 1 0 1 1 1 0 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|449066436|ref|YP_007433518.1| - 0.019 14.6 0.0 0.055 13.1 0.0 1.7 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|449066436|ref|YP_007433518.1| - 0.02 13.9 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DOT1 PF08123.13 gi|449066436|ref|YP_007433518.1| - 0.031 13.8 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_12 PF08242.12 gi|449066436|ref|YP_007433518.1| - 0.046 14.5 0.0 0.073 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|449066436|ref|YP_007433518.1| - 0.056 13.2 0.1 0.11 12.2 0.0 1.5 2 0 0 2 2 2 0 Lysine methyltransferase Methyltransf_5 PF01795.19 gi|449066436|ref|YP_007433518.1| - 0.064 12.8 0.0 0.1 12.1 0.0 1.3 1 1 0 1 1 1 0 MraW methylase family TRM PF02005.16 gi|449066436|ref|YP_007433518.1| - 0.15 11.2 0.1 0.24 10.5 0.0 1.3 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase CbiD PF01888.17 gi|449066437|ref|YP_007433519.1| - 2e-73 246.8 3.3 2e-73 246.8 3.3 1.4 2 0 0 2 2 2 1 CbiD Ribosomal_L12_N PF16320.5 gi|449066438|ref|YP_007433520.1| - 0.046 13.4 0.2 0.064 13.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L7/L12 dimerisation domain TP_methylase PF00590.20 gi|449066439|ref|YP_007433521.1| - 2.3e-38 132.3 0.1 2.9e-38 132.0 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RPT PF13446.6 gi|449066439|ref|YP_007433521.1| - 0.13 12.3 0.3 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 A repeated domain in UCH-protein CbiC PF02570.15 gi|449066440|ref|YP_007433522.1| - 1.8e-54 184.4 0.4 2.4e-54 184.0 0.4 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.17 gi|449066440|ref|YP_007433522.1| - 3.8e-17 62.5 0.0 1.5e-16 60.7 0.0 2.0 1 1 1 2 2 2 1 CbiX SinI PF08671.10 gi|449066440|ref|YP_007433522.1| - 0.044 13.6 0.1 34 4.3 0.0 3.6 3 0 0 3 3 3 0 Anti-repressor SinI HTH_10 PF04967.12 gi|449066440|ref|YP_007433522.1| - 0.22 11.3 0.5 1.6 8.6 0.1 2.4 3 0 0 3 3 3 0 HTH DNA binding domain TP_methylase PF00590.20 gi|449066441|ref|YP_007433523.1| - 2e-27 96.5 0.0 2.3e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Phage_mat-A PF03863.13 gi|449066441|ref|YP_007433523.1| - 0.071 12.0 0.0 0.091 11.7 0.0 1.3 1 0 0 1 1 1 0 Phage maturation protein CbiG_N PF11760.8 gi|449066442|ref|YP_007433524.1| - 2.3e-29 101.2 0.0 5.3e-29 100.1 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|449066442|ref|YP_007433524.1| - 9.1e-15 55.2 0.7 1.5e-14 54.6 0.1 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus Asparaginase_2 PF01112.18 gi|449066443|ref|YP_007433525.1| - 7.5e-70 235.4 8.8 5.1e-39 134.1 2.1 2.0 1 1 1 2 2 2 2 Asparaginase Flagellin_IN PF07196.13 gi|449066443|ref|YP_007433525.1| - 0.23 11.7 2.7 12 6.2 0.3 3.6 4 0 0 4 4 4 0 Flagellin hook IN motif AKAP28 PF14469.6 gi|449066446|ref|YP_007433528.1| - 0.014 15.1 0.1 0.027 14.2 0.1 1.4 1 0 0 1 1 1 0 28 kDa A-kinase anchor CHU_C PF13585.6 gi|449066446|ref|YP_007433528.1| - 0.02 14.9 1.9 1.5 8.9 0.1 2.4 2 0 0 2 2 2 0 C-terminal domain of CHU protein family Rrp44_CSD1 PF17216.3 gi|449066448|ref|YP_007433530.1| - 0.042 13.6 0.2 0.07 12.8 0.2 1.3 1 0 0 1 1 1 0 Rrp44-like cold shock domain ADH_N PF08240.12 gi|449066450|ref|YP_007433532.1| - 1.4e-26 92.5 1.6 2.2e-26 91.8 0.3 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449066450|ref|YP_007433532.1| - 8e-22 77.6 0.0 1.3e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|449066450|ref|YP_007433532.1| - 1.4e-14 54.1 0.7 2.1e-14 53.5 0.7 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|449066450|ref|YP_007433532.1| - 0.0044 18.1 0.0 0.0078 17.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DUF4147 PF13660.6 gi|449066450|ref|YP_007433532.1| - 0.006 16.2 0.5 0.12 11.9 0.0 2.3 1 1 0 2 2 2 1 Domain of unknown function (DUF4147) Shikimate_DH PF01488.20 gi|449066450|ref|YP_007433532.1| - 0.049 13.7 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Fer4_17 PF13534.6 gi|449066450|ref|YP_007433532.1| - 0.057 14.0 1.5 0.093 13.3 0.3 1.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain CobD_Cbib PF03186.13 gi|449066451|ref|YP_007433533.1| - 1.6e-27 96.4 0.0 2.4e-27 95.8 0.0 1.3 1 1 0 1 1 1 1 CobD/Cbib protein TM_helix PF05552.12 gi|449066451|ref|YP_007433533.1| - 2.1 8.4 6.6 0.27 11.3 0.5 2.3 2 0 0 2 2 2 0 Conserved TM helix CobS PF02654.15 gi|449066453|ref|YP_007433535.1| - 2.7e-29 102.8 11.7 3.1e-29 102.6 11.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase GATase_3 PF07685.14 gi|449066454|ref|YP_007433536.1| - 7.4e-32 110.5 0.0 1.1e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|449066454|ref|YP_007433536.1| - 3.2e-12 46.6 0.0 6e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|449066454|ref|YP_007433536.1| - 4.1e-11 43.1 0.0 4.8e-08 33.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|449066454|ref|YP_007433536.1| - 0.0051 16.7 0.0 0.008 16.0 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|449066454|ref|YP_007433536.1| - 0.026 14.3 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449066454|ref|YP_007433536.1| - 0.24 11.1 0.0 0.6 9.8 0.0 1.7 1 0 0 1 1 1 0 Peptidase C26 NqrM PF04400.13 gi|449066454|ref|YP_007433536.1| - 0.27 11.0 0.5 0.56 10.0 0.5 1.4 1 0 0 1 1 1 0 (Na+)-NQR maturation NqrM GMP_synt_C PF00958.22 gi|449066455|ref|YP_007433537.1| - 1.6e-21 76.2 1.7 6e-18 64.7 0.2 2.8 1 1 1 2 2 2 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|449066455|ref|YP_007433537.1| - 5.8e-13 48.5 0.2 2.4e-12 46.5 0.2 1.9 1 1 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|449066455|ref|YP_007433537.1| - 7.6e-08 32.3 0.0 1.2e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|449066455|ref|YP_007433537.1| - 8.5e-07 28.7 0.0 4.7e-05 23.0 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC DUF1152 PF06626.12 gi|449066455|ref|YP_007433537.1| - 0.00065 19.0 0.3 0.0075 15.5 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1152) Arginosuc_synth PF00764.19 gi|449066455|ref|YP_007433537.1| - 0.012 14.9 0.7 0.015 14.6 0.1 1.5 2 0 0 2 2 2 0 Arginosuccinate synthase ThiI PF02568.14 gi|449066455|ref|YP_007433537.1| - 0.028 14.0 0.2 0.086 12.4 0.0 2.0 2 1 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|449066455|ref|YP_007433537.1| - 0.039 12.7 0.0 0.87 8.3 0.0 2.2 2 0 0 2 2 2 0 tRNA methyl transferase Latarcin PF10279.9 gi|449066455|ref|YP_007433537.1| - 0.22 11.9 2.0 3.8 8.0 0.2 3.1 3 0 0 3 3 3 0 Latarcin precursor Tautomerase PF01361.21 gi|449066455|ref|YP_007433537.1| - 0.76 9.7 2.9 18 5.4 0.0 3.3 3 0 0 3 3 3 0 Tautomerase enzyme Peptidase_M48 PF01435.18 gi|449066456|ref|YP_007433538.1| - 4.3e-25 88.6 0.0 1.4e-24 87.0 0.0 1.7 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|449066456|ref|YP_007433538.1| - 0.014 14.6 1.8 0.034 13.3 0.2 2.1 2 1 0 2 2 2 0 BlaR1 peptidase M56 CBS PF00571.28 gi|449066457|ref|YP_007433539.1| - 1.9e-31 108.3 4.6 8.1e-16 58.2 0.5 2.1 2 0 0 2 2 2 2 CBS domain RHH_4 PF13467.6 gi|449066458|ref|YP_007433540.1| - 0.00058 19.7 0.0 0.00071 19.4 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|449066458|ref|YP_007433540.1| - 0.13 12.3 0.1 0.7 9.9 0.0 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF1689 PF07954.11 gi|449066459|ref|YP_007433541.1| - 0.13 12.7 0.1 0.54 10.7 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1689) DeoC PF01791.9 gi|449066460|ref|YP_007433542.1| - 1.9e-33 116.0 0.0 2.3e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Enterotoxin_a PF01375.17 gi|449066460|ref|YP_007433542.1| - 0.017 14.8 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Heat-labile enterotoxin alpha chain PMT_2 PF13231.6 gi|449066461|ref|YP_007433543.1| - 2e-08 34.6 12.7 2e-08 34.6 12.7 3.0 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase NTP_transferase PF00483.23 gi|449066462|ref|YP_007433544.1| - 6.2e-28 98.0 0.0 7.2e-28 97.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|449066462|ref|YP_007433544.1| - 1.6e-09 38.4 0.0 1.9e-09 38.1 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain TPP_enzyme_N PF02776.18 gi|449066462|ref|YP_007433544.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Glycos_transf_2 PF00535.26 gi|449066462|ref|YP_007433544.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.21 gi|449066463|ref|YP_007433545.1| - 3.6e-22 79.0 0.0 5.9e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|449066463|ref|YP_007433545.1| - 1.1e-19 71.1 0.0 3.1e-19 69.5 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase UDPG_MGDP_dh_N PF03721.14 gi|449066463|ref|YP_007433545.1| - 0.0013 18.3 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Polysacc_synt_2 PF02719.15 gi|449066463|ref|YP_007433545.1| - 0.0014 17.8 0.0 0.0028 16.9 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|449066463|ref|YP_007433545.1| - 0.0066 15.6 0.0 0.015 14.4 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain Glyco_transf_4 PF13439.6 gi|449066463|ref|YP_007433545.1| - 0.12 12.4 0.0 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 BcrAD_BadFG PF01869.20 gi|449066464|ref|YP_007433546.1| - 9.8e-42 143.3 1.5 1.2e-41 143.0 1.5 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|449066464|ref|YP_007433546.1| - 0.0025 17.4 0.4 0.66 9.4 0.1 2.2 2 0 0 2 2 2 2 ROK family G_glu_transpept PF01019.21 gi|449066465|ref|YP_007433547.1| - 1.8e-74 251.3 0.0 2.6e-74 250.8 0.0 1.3 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase MazG PF03819.17 gi|449066467|ref|YP_007433549.1| - 8.3e-14 51.5 0.5 1.1e-13 51.1 0.5 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|449066467|ref|YP_007433549.1| - 5.6e-07 29.7 1.0 6.6e-07 29.5 0.1 1.5 2 0 0 2 2 2 1 MazG-like family PRA-PH PF01503.17 gi|449066467|ref|YP_007433549.1| - 2.4e-05 24.7 1.5 3.7e-05 24.1 1.5 1.4 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase UpxZ PF06603.11 gi|449066467|ref|YP_007433549.1| - 0.068 13.5 0.1 0.076 13.3 0.1 1.1 1 0 0 1 1 1 0 UpxZ family of transcription anti-terminator antagonists Helicase_RecD PF05127.14 gi|449066468|ref|YP_007433550.1| - 1.3e-48 165.2 0.0 2e-48 164.6 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|449066468|ref|YP_007433550.1| - 7.4e-35 120.4 0.0 8e-26 90.8 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|449066468|ref|YP_007433550.1| - 2.6e-26 91.4 0.1 6.1e-26 90.2 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|449066468|ref|YP_007433550.1| - 0.00063 19.5 0.0 0.002 17.9 0.0 1.8 1 1 1 2 2 2 1 AAA domain Acetyltransf_1 PF00583.25 gi|449066468|ref|YP_007433550.1| - 0.0018 18.5 0.0 0.0043 17.3 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|449066468|ref|YP_007433550.1| - 0.0035 17.7 0.0 0.016 15.7 0.0 2.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|449066468|ref|YP_007433550.1| - 0.05 13.6 0.0 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain YfhO PF09586.10 gi|449066469|ref|YP_007433551.1| - 1.1 7.4 9.7 1.5 7.0 9.7 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO YfdX PF10938.8 gi|449066470|ref|YP_007433552.1| - 0.00093 19.1 0.1 0.0031 17.5 0.1 1.8 1 1 1 2 2 2 1 YfdX protein Mad3_BUB1_I PF08311.12 gi|449066470|ref|YP_007433552.1| - 0.02 14.9 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Mad3/BUB1 homology region 1 UPF0253 PF06786.12 gi|449066470|ref|YP_007433552.1| - 0.022 15.0 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0253) Exonuc_VII_S PF02609.16 gi|449066470|ref|YP_007433552.1| - 0.047 13.8 0.6 0.41 10.7 0.0 2.5 2 1 0 2 2 2 0 Exonuclease VII small subunit AA_permease_2 PF13520.6 gi|449066471|ref|YP_007433553.1| - 1.5e-14 53.7 46.5 4.6e-14 52.1 46.6 1.6 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|449066471|ref|YP_007433553.1| - 4.2e-12 45.4 41.5 7.4e-12 44.6 39.5 2.1 1 1 0 1 1 1 1 Amino acid permease DUF2583 PF10762.9 gi|449066471|ref|YP_007433553.1| - 4.9 7.6 16.0 0.38 11.2 0.9 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF2583) PHO4 PF01384.20 gi|449066472|ref|YP_007433554.1| - 0.0083 15.2 1.7 0.0089 15.1 1.7 1.0 1 0 0 1 1 1 1 Phosphate transporter family DUF4750 PF15938.5 gi|449066472|ref|YP_007433554.1| - 0.22 11.2 3.3 2 8.1 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4750) PCMT PF01135.19 gi|449066473|ref|YP_007433555.1| - 3e-43 148.0 0.0 3.8e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|449066473|ref|YP_007433555.1| - 2.8e-07 29.9 0.0 4.6e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|449066473|ref|YP_007433555.1| - 7e-06 25.7 0.0 9.4e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|449066473|ref|YP_007433555.1| - 1.6e-05 24.7 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449066473|ref|YP_007433555.1| - 2.1e-05 25.2 0.0 3.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|449066473|ref|YP_007433555.1| - 0.0001 21.9 0.1 0.00016 21.3 0.1 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 MTS PF05175.14 gi|449066473|ref|YP_007433555.1| - 0.00012 21.6 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.10 gi|449066473|ref|YP_007433555.1| - 0.00028 20.6 0.0 0.00041 20.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_23 PF13489.6 gi|449066473|ref|YP_007433555.1| - 0.00069 19.5 0.0 0.00096 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|449066473|ref|YP_007433555.1| - 0.0011 18.2 0.1 0.0016 17.6 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.7 gi|449066473|ref|YP_007433555.1| - 0.0013 18.7 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|449066473|ref|YP_007433555.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.12 gi|449066473|ref|YP_007433555.1| - 0.0033 18.0 0.0 0.0074 16.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|449066473|ref|YP_007433555.1| - 0.0054 16.1 0.0 0.014 14.7 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|449066473|ref|YP_007433555.1| - 0.056 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|449066473|ref|YP_007433555.1| - 0.16 11.4 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase DUF87 PF01935.17 gi|449066474|ref|YP_007433556.1| - 6.4e-17 62.4 3.3 1.9e-16 60.8 1.0 2.4 1 1 1 2 2 2 1 Helicase HerA, central domain DUF1474 PF07342.11 gi|449066474|ref|YP_007433556.1| - 0.074 13.6 0.2 2.4 8.7 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1474) NurA PF09376.10 gi|449066475|ref|YP_007433557.1| - 2.8e-09 37.0 0.1 0.00015 21.5 0.0 2.1 1 1 1 2 2 2 2 NurA domain ThiP_synth PF10120.9 gi|449066476|ref|YP_007433558.1| - 1.2e-45 155.1 0.1 1.8e-45 154.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase INTS5_N PF14837.6 gi|449066476|ref|YP_007433558.1| - 0.024 14.2 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 Integrator complex subunit 5 N-terminus MA3 PF02847.17 gi|449066476|ref|YP_007433558.1| - 0.033 14.2 0.9 0.075 13.0 0.1 2.0 2 0 0 2 2 2 0 MA3 domain Peptidase_M50 PF02163.22 gi|449066479|ref|YP_007433561.1| - 4.2e-07 29.5 6.9 0.00019 20.8 2.5 3.0 2 1 1 3 3 3 3 Peptidase family M50 DUF4492 PF14899.6 gi|449066479|ref|YP_007433561.1| - 0.07 13.1 1.4 0.18 11.8 1.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4492) Rhomboid PF01694.22 gi|449066480|ref|YP_007433562.1| - 1.6e-20 73.6 4.2 1.6e-20 73.6 4.2 1.7 2 0 0 2 2 2 1 Rhomboid family DUF4203 PF13886.6 gi|449066480|ref|YP_007433562.1| - 0.021 14.5 9.3 0.15 11.7 1.7 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4203) PTS_EIIC_2 PF13303.6 gi|449066480|ref|YP_007433562.1| - 0.038 13.0 0.3 0.038 13.0 0.3 2.3 2 2 0 2 2 2 0 Phosphotransferase system, EIIC AAA_18 PF13238.6 gi|449066482|ref|YP_007433564.1| - 5.7e-22 78.7 0.1 1e-21 77.9 0.0 1.4 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|449066482|ref|YP_007433564.1| - 5.2e-07 30.2 0.1 1.9e-06 28.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|449066482|ref|YP_007433564.1| - 1.9e-06 27.9 0.0 3.4e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|449066482|ref|YP_007433564.1| - 2.4e-06 28.0 0.0 8.2e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|449066482|ref|YP_007433564.1| - 7.3e-06 26.2 0.0 0.00013 22.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|449066482|ref|YP_007433564.1| - 0.00011 22.4 0.0 0.00019 21.6 0.0 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.6 gi|449066482|ref|YP_007433564.1| - 0.00067 19.9 0.5 0.0017 18.6 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|449066482|ref|YP_007433564.1| - 0.00082 19.7 0.1 0.001 19.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|449066482|ref|YP_007433564.1| - 0.00087 18.8 0.1 0.0023 17.4 0.0 1.8 2 1 0 2 2 2 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|449066482|ref|YP_007433564.1| - 0.00095 18.5 0.1 0.0022 17.3 0.1 1.8 1 1 0 1 1 1 1 Zeta toxin Cytidylate_kin PF02224.18 gi|449066482|ref|YP_007433564.1| - 0.0012 18.6 0.0 0.0058 16.4 0.0 1.9 2 0 0 2 2 2 1 Cytidylate kinase AAA_16 PF13191.6 gi|449066482|ref|YP_007433564.1| - 0.0029 18.0 0.1 0.0045 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|449066482|ref|YP_007433564.1| - 0.0029 17.3 0.0 0.0044 16.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|449066482|ref|YP_007433564.1| - 0.0063 15.6 0.0 0.0097 15.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PRK PF00485.18 gi|449066482|ref|YP_007433564.1| - 0.007 16.1 0.0 0.025 14.3 0.0 1.9 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family Cytidylate_kin2 PF13189.6 gi|449066482|ref|YP_007433564.1| - 0.012 15.8 0.1 0.034 14.3 0.0 1.9 2 1 0 2 2 2 0 Cytidylate kinase-like family RNA_helicase PF00910.22 gi|449066482|ref|YP_007433564.1| - 0.013 15.9 0.0 0.034 14.5 0.0 1.8 1 1 0 1 1 1 0 RNA helicase DUF2075 PF09848.9 gi|449066482|ref|YP_007433564.1| - 0.014 14.7 0.0 0.016 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Hydin_ADK PF17213.3 gi|449066482|ref|YP_007433564.1| - 0.014 15.7 0.0 0.024 14.9 0.0 1.4 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain NTPase_1 PF03266.15 gi|449066482|ref|YP_007433564.1| - 0.019 14.9 2.3 0.038 13.9 0.2 2.2 1 1 1 2 2 2 0 NTPase AAA_3 PF07726.11 gi|449066482|ref|YP_007433564.1| - 0.019 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|449066482|ref|YP_007433564.1| - 0.02 14.8 0.2 0.13 12.1 0.1 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|449066482|ref|YP_007433564.1| - 0.021 14.6 0.4 0.033 13.9 0.4 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|449066482|ref|YP_007433564.1| - 0.021 14.8 0.7 0.04 14.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|449066482|ref|YP_007433564.1| - 0.026 14.3 0.0 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|449066482|ref|YP_007433564.1| - 0.032 13.9 0.2 0.071 12.8 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|449066482|ref|YP_007433564.1| - 0.034 14.5 0.1 0.091 13.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain CPT PF07931.12 gi|449066482|ref|YP_007433564.1| - 0.045 13.6 0.0 0.052 13.4 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein dNK PF01712.19 gi|449066482|ref|YP_007433564.1| - 0.05 13.4 1.5 0.15 11.9 0.2 2.2 1 1 1 2 2 2 0 Deoxynucleoside kinase DnaB_C PF03796.15 gi|449066482|ref|YP_007433564.1| - 0.064 12.6 0.2 0.62 9.3 0.1 2.1 1 1 0 2 2 2 0 DnaB-like helicase C terminal domain ADK PF00406.22 gi|449066482|ref|YP_007433564.1| - 0.08 13.0 0.1 0.24 11.5 0.0 2.0 1 1 0 2 2 2 0 Adenylate kinase Thymidylate_kin PF02223.17 gi|449066482|ref|YP_007433564.1| - 0.084 12.6 0.4 0.39 10.4 0.1 2.0 1 1 1 2 2 2 0 Thymidylate kinase NACHT PF05729.12 gi|449066482|ref|YP_007433564.1| - 0.097 12.6 0.1 0.21 11.5 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|449066482|ref|YP_007433564.1| - 0.1 12.1 0.1 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|449066482|ref|YP_007433564.1| - 0.13 11.9 0.3 0.46 10.2 0.1 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF4375 PF14300.6 gi|449066482|ref|YP_007433564.1| - 0.15 12.3 1.5 0.49 10.7 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) Mg_chelatase PF01078.21 gi|449066482|ref|YP_007433564.1| - 0.18 11.2 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|449066482|ref|YP_007433564.1| - 0.22 11.5 0.7 0.5 10.4 0.2 1.9 1 1 1 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|449066482|ref|YP_007433564.1| - 0.26 10.8 0.3 0.43 10.1 0.3 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|449066482|ref|YP_007433564.1| - 0.94 9.5 3.7 2.1 8.4 3.7 2.1 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|449066483|ref|YP_007433565.1| - 1.5e-97 325.9 0.1 1.8e-97 325.7 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|449066483|ref|YP_007433565.1| - 5.5e-13 49.1 0.0 2.9e-12 46.8 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|449066483|ref|YP_007433565.1| - 1.5e-10 41.0 0.1 3.6e-05 23.4 0.1 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|449066483|ref|YP_007433565.1| - 1.8e-09 37.8 0.4 5.9e-07 29.6 0.1 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|449066483|ref|YP_007433565.1| - 4.1e-06 26.2 0.3 5.3e-05 22.6 0.3 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|449066483|ref|YP_007433565.1| - 4.2e-05 23.0 0.0 5.9e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|449066483|ref|YP_007433565.1| - 0.00036 20.2 0.0 0.00061 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|449066483|ref|YP_007433565.1| - 0.00037 19.6 0.1 0.00064 18.8 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|449066483|ref|YP_007433565.1| - 0.0032 17.3 1.0 0.72 9.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF4898 PF16239.5 gi|449066483|ref|YP_007433565.1| - 0.012 15.6 1.4 0.017 15.1 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4898) IstB_IS21 PF01695.17 gi|449066483|ref|YP_007433565.1| - 0.19 11.4 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF4364 PF14277.6 gi|449066484|ref|YP_007433566.1| - 0.00083 19.1 0.1 0.0009 19.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Mnd1 PF03962.15 gi|449066484|ref|YP_007433566.1| - 0.011 16.1 0.3 0.51 10.7 0.2 2.1 1 1 0 1 1 1 0 Mnd1 HTH domain DUF1717 PF05414.11 gi|449066484|ref|YP_007433566.1| - 0.019 15.4 0.2 0.021 15.3 0.2 1.1 1 0 0 1 1 1 0 Viral domain of unknown function (DUF1717) Type2_restr_D3 PF16902.5 gi|449066484|ref|YP_007433566.1| - 0.062 13.2 0.2 0.072 13.0 0.2 1.2 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain Arg_repressor PF01316.21 gi|449066484|ref|YP_007433566.1| - 0.2 11.4 1.9 0.27 11.0 1.4 1.5 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain TrmB PF01978.19 gi|449066485|ref|YP_007433567.1| - 1.4e-12 47.3 0.1 2e-12 46.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449066485|ref|YP_007433567.1| - 2.6e-07 30.4 0.0 4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|449066485|ref|YP_007433567.1| - 9.1e-07 28.6 0.6 2.2e-05 24.2 0.3 2.6 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|449066485|ref|YP_007433567.1| - 2.1e-06 27.5 0.8 2.7e-06 27.2 0.8 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|449066485|ref|YP_007433567.1| - 0.00028 20.8 0.1 0.00041 20.2 0.1 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|449066485|ref|YP_007433567.1| - 0.00035 20.7 0.2 0.0013 18.9 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|449066485|ref|YP_007433567.1| - 0.00061 20.1 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|449066485|ref|YP_007433567.1| - 0.00081 19.8 0.1 0.0019 18.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|449066485|ref|YP_007433567.1| - 0.0021 18.2 0.1 0.0034 17.5 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|449066485|ref|YP_007433567.1| - 0.0022 17.9 0.0 0.0044 17.0 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|449066485|ref|YP_007433567.1| - 0.0038 17.3 0.2 0.0056 16.8 0.2 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|449066485|ref|YP_007433567.1| - 0.0042 16.6 0.3 0.0092 15.5 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|449066485|ref|YP_007433567.1| - 0.0085 16.1 0.0 0.018 15.1 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|449066485|ref|YP_007433567.1| - 0.017 14.9 0.0 0.15 11.9 0.0 2.1 1 1 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.6 gi|449066485|ref|YP_007433567.1| - 0.029 14.1 0.2 0.045 13.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) tRNA-synt_His PF13393.6 gi|449066485|ref|YP_007433567.1| - 0.031 13.6 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Histidyl-tRNA synthetase DUF2680 PF10925.8 gi|449066485|ref|YP_007433567.1| - 0.099 12.7 0.1 0.28 11.2 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) 5-FTHF_cyc-lig PF01812.20 gi|449066486|ref|YP_007433568.1| - 2.7e-34 118.6 0.0 3.5e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family YcaO PF02624.16 gi|449066486|ref|YP_007433568.1| - 0.18 11.0 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding LysE PF01810.18 gi|449066487|ref|YP_007433569.1| - 1e-11 44.7 16.2 1.5e-11 44.1 16.2 1.2 1 0 0 1 1 1 1 LysE type translocator RALF PF05498.11 gi|449066487|ref|YP_007433569.1| - 0.19 12.7 0.1 0.43 11.6 0.0 1.6 2 0 0 2 2 2 0 Rapid ALkalinization Factor (RALF) DUF1129 PF06570.11 gi|449066487|ref|YP_007433569.1| - 3.9 6.9 9.5 0.061 12.8 1.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) HTH_38 PF13936.6 gi|449066488|ref|YP_007433570.1| - 6.2e-19 67.5 6.9 1e-09 38.0 0.1 3.5 2 1 2 4 4 4 3 Helix-turn-helix domain HTH_7 PF02796.15 gi|449066488|ref|YP_007433570.1| - 2.1e-14 53.3 8.8 0.00096 19.2 0.1 3.2 3 0 0 3 3 3 3 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|449066488|ref|YP_007433570.1| - 2.9e-13 49.2 1.2 0.0005 19.8 0.0 3.2 3 0 0 3 3 3 3 Homeodomain-like domain GerE PF00196.19 gi|449066488|ref|YP_007433570.1| - 2.1e-09 36.8 1.8 0.0022 17.5 0.0 3.4 3 0 0 3 3 3 3 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|449066488|ref|YP_007433570.1| - 7.6e-09 35.1 1.5 0.0072 16.0 0.0 3.2 3 0 0 3 3 3 3 Sigma-70, region 4 GcrA PF07750.11 gi|449066488|ref|YP_007433570.1| - 1.5e-08 35.2 0.5 0.001 19.5 0.0 2.2 1 1 1 2 2 2 2 GcrA cell cycle regulator HTH_29 PF13551.6 gi|449066488|ref|YP_007433570.1| - 4.5e-08 33.0 0.1 0.038 14.0 0.0 3.3 3 0 0 3 3 3 2 Winged helix-turn helix HTH_28 PF13518.6 gi|449066488|ref|YP_007433570.1| - 1.3e-07 31.6 0.1 0.03 14.4 0.0 2.6 3 0 0 3 3 2 2 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|449066488|ref|YP_007433570.1| - 6.2e-07 28.7 0.0 0.00043 19.6 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|449066488|ref|YP_007433570.1| - 3.6e-06 26.4 0.7 0.23 11.1 0.0 3.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding CENP-B_N PF04218.13 gi|449066488|ref|YP_007433570.1| - 6.9e-06 25.6 1.9 0.0039 16.8 0.1 2.5 2 0 0 2 2 2 2 CENP-B N-terminal DNA-binding domain Sigma70_r4 PF04545.16 gi|449066488|ref|YP_007433570.1| - 2.5e-05 23.7 0.8 0.035 13.6 0.0 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Terminase_5 PF06056.12 gi|449066488|ref|YP_007433570.1| - 2.5e-05 24.1 0.1 0.61 10.0 0.0 3.2 3 0 0 3 3 3 2 Putative ATPase subunit of terminase (gpP-like) HTH_50 PF18024.1 gi|449066488|ref|YP_007433570.1| - 4.2e-05 23.1 2.5 0.068 12.8 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain TnsD PF15978.5 gi|449066488|ref|YP_007433570.1| - 4.3e-05 22.7 3.8 0.0034 16.4 0.8 2.2 1 1 1 2 2 2 2 Tn7-like transposition protein D HTH_10 PF04967.12 gi|449066488|ref|YP_007433570.1| - 0.00015 21.5 1.3 0.26 11.1 0.0 3.4 3 0 0 3 3 3 1 HTH DNA binding domain Phage_antitermQ PF06530.12 gi|449066488|ref|YP_007433570.1| - 0.00035 20.4 3.3 0.44 10.5 0.1 2.9 1 1 2 3 3 3 2 Phage antitermination protein Q HTH_40 PF14493.6 gi|449066488|ref|YP_007433570.1| - 0.00061 20.2 1.4 0.26 11.8 0.3 2.9 1 1 1 2 2 2 1 Helix-turn-helix domain Recombinase PF07508.13 gi|449066488|ref|YP_007433570.1| - 0.00063 20.1 1.2 1.7 9.1 0.0 3.0 3 0 0 3 3 3 2 Recombinase HTH_Tnp_IS1 PF12759.7 gi|449066488|ref|YP_007433570.1| - 0.0011 18.5 0.1 1 9.0 0.0 2.5 2 0 0 2 2 2 1 InsA C-terminal domain HTH_3 PF01381.22 gi|449066488|ref|YP_007433570.1| - 0.0026 17.8 3.4 0.61 10.2 0.4 3.3 2 1 1 3 3 3 1 Helix-turn-helix TrmB PF01978.19 gi|449066488|ref|YP_007433570.1| - 0.0028 17.5 0.7 1.2 9.0 0.0 2.8 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF3791 PF12668.7 gi|449066488|ref|YP_007433570.1| - 0.0035 17.3 1.4 5.4 7.1 0.1 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF3791) HTH_Tnp_1 PF01527.20 gi|449066488|ref|YP_007433570.1| - 0.0076 16.5 0.1 0.33 11.3 0.0 2.6 3 0 0 3 3 2 1 Transposase HTH_35 PF13693.6 gi|449066488|ref|YP_007433570.1| - 0.0088 16.1 0.3 2.9 8.0 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding PAX PF00292.18 gi|449066488|ref|YP_007433570.1| - 0.0091 15.9 0.2 0.056 13.4 0.1 2.2 1 1 2 3 3 3 1 'Paired box' domain DUF2089 PF09862.9 gi|449066488|ref|YP_007433570.1| - 0.0093 16.0 2.1 0.021 14.9 0.7 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF2089) Mga PF05043.13 gi|449066488|ref|YP_007433570.1| - 0.011 16.3 2.8 1 10.0 0.0 2.9 1 1 1 3 3 3 0 Mga helix-turn-helix domain DUF433 PF04255.14 gi|449066488|ref|YP_007433570.1| - 0.012 15.4 0.1 3.1 7.7 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF433) HTH_5 PF01022.20 gi|449066488|ref|YP_007433570.1| - 0.014 15.2 0.4 15 5.6 0.0 3.6 3 1 0 3 3 3 0 Bacterial regulatory protein, arsR family Death PF00531.22 gi|449066488|ref|YP_007433570.1| - 0.015 15.4 0.1 2.1 8.6 0.0 2.7 2 1 0 2 2 2 0 Death domain WYL_3 PF18488.1 gi|449066488|ref|YP_007433570.1| - 0.017 15.4 0.3 1.7 9.1 0.0 2.9 3 0 0 3 3 3 0 WYL domain HU-CCDC81_bac_2 PF18175.1 gi|449066488|ref|YP_007433570.1| - 0.023 14.6 0.5 0.99 9.3 0.1 2.5 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 2 MRP-L20 PF12824.7 gi|449066488|ref|YP_007433570.1| - 0.032 14.4 1.8 1.5 9.0 0.1 2.2 1 1 1 2 2 2 0 Mitochondrial ribosomal protein subunit L20 ANT PF03374.14 gi|449066488|ref|YP_007433570.1| - 0.036 14.4 0.6 3.4 8.0 0.0 2.9 2 1 1 3 3 3 0 Phage antirepressor protein KilAC domain DUF3102 PF11300.8 gi|449066488|ref|YP_007433570.1| - 0.042 14.1 0.9 0.057 13.7 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3102) HTH_AsnC-type PF13404.6 gi|449066488|ref|YP_007433570.1| - 0.044 13.6 0.0 1.5 8.7 0.0 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain KorB PF08535.10 gi|449066488|ref|YP_007433570.1| - 0.054 13.5 0.5 6.7 6.8 0.0 3.2 2 1 1 3 3 3 0 KorB domain RWP-RK PF02042.15 gi|449066488|ref|YP_007433570.1| - 0.062 13.3 0.6 2.3 8.3 0.0 2.6 2 0 0 2 2 2 0 RWP-RK domain Homeodomain PF00046.29 gi|449066488|ref|YP_007433570.1| - 0.062 13.1 0.3 11 6.0 0.0 3.6 3 2 0 3 3 3 0 Homeodomain Sigma70_ECF PF07638.11 gi|449066488|ref|YP_007433570.1| - 0.068 13.0 0.4 1.4 8.8 0.2 2.4 1 1 1 2 2 2 0 ECF sigma factor PIN_12 PF16289.5 gi|449066488|ref|YP_007433570.1| - 0.081 13.4 5.8 0.11 13.0 5.8 1.2 1 0 0 1 1 1 0 PIN domain Phage_terminase PF10668.9 gi|449066488|ref|YP_007433570.1| - 0.086 12.9 0.7 2.8 8.0 0.0 2.9 2 2 1 3 3 3 0 Phage terminase small subunit MarR_2 PF12802.7 gi|449066488|ref|YP_007433570.1| - 0.11 12.4 0.1 27 4.7 0.0 2.9 3 1 0 3 3 3 0 MarR family HTH_36 PF13730.6 gi|449066488|ref|YP_007433570.1| - 0.11 12.5 3.5 39 4.3 0.1 3.5 3 1 0 3 3 3 0 Helix-turn-helix domain NPA PF16469.5 gi|449066488|ref|YP_007433570.1| - 0.17 12.5 1.7 1.2 9.7 1.7 2.1 1 1 0 1 1 1 0 Nematode polyprotein allergen ABA-1 NUMOD1 PF07453.13 gi|449066488|ref|YP_007433570.1| - 3 8.2 11.1 2.2 8.6 0.1 3.6 4 0 0 4 4 3 0 NUMOD1 domain tRNA-synt_1b PF00579.25 gi|449066489|ref|YP_007433571.1| - 1.6e-25 90.0 0.0 2.5e-25 89.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Snf7 PF03357.21 gi|449066490|ref|YP_007433572.1| - 0.0011 18.5 1.1 0.0017 18.0 1.1 1.3 1 0 0 1 1 1 1 Snf7 LOH1CR12 PF10158.9 gi|449066490|ref|YP_007433572.1| - 0.0017 18.4 0.8 0.0039 17.2 0.6 1.7 1 1 0 1 1 1 1 Tumour suppressor protein BLOC1S3 PF15753.5 gi|449066490|ref|YP_007433572.1| - 0.047 13.8 0.1 0.083 13.0 0.1 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 tRNA-synt_2c PF01411.19 gi|449066491|ref|YP_007433573.1| - 7.6e-15 54.4 0.2 1.1e-14 53.9 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|449066491|ref|YP_007433573.1| - 2.3e-13 50.0 0.8 4.3e-13 49.1 0.8 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain GtrA PF04138.14 gi|449066492|ref|YP_007433574.1| - 5.9e-20 71.7 10.8 8.6e-20 71.1 10.8 1.2 1 0 0 1 1 1 1 GtrA-like protein Aminotran_1_2 PF00155.21 gi|449066493|ref|YP_007433575.1| - 8.6e-11 41.6 0.0 1.9e-09 37.2 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II HTH_10 PF04967.12 gi|449066494|ref|YP_007433576.1| - 1.6e-20 72.6 0.1 2.8e-20 71.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|449066494|ref|YP_007433576.1| - 6.4e-06 25.6 0.3 0.0016 18.0 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Mga PF05043.13 gi|449066494|ref|YP_007433576.1| - 0.041 14.5 0.8 0.29 11.8 0.8 2.2 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_3 PF01381.22 gi|449066494|ref|YP_007433576.1| - 0.055 13.5 0.3 0.15 12.2 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix ENT PF03735.14 gi|449066494|ref|YP_007433576.1| - 0.14 12.2 4.7 0.13 12.3 1.1 2.6 3 1 0 3 3 3 0 ENT domain HTH_11 PF08279.12 gi|449066494|ref|YP_007433576.1| - 0.2 11.6 1.7 1 9.3 0.7 2.6 1 1 1 2 2 2 0 HTH domain Fer4 PF00037.27 gi|449066495|ref|YP_007433577.1| - 4.6e-14 51.5 13.6 4.3e-07 29.5 6.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|449066495|ref|YP_007433577.1| - 3.5e-11 43.5 27.6 2.9e-07 30.9 9.8 1.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449066495|ref|YP_007433577.1| - 7.6e-09 35.6 6.2 1.1e-08 35.1 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449066495|ref|YP_007433577.1| - 4.5e-08 33.1 7.4 9.1e-08 32.1 7.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|449066495|ref|YP_007433577.1| - 9.1e-08 32.1 6.3 1.3e-07 31.6 6.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449066495|ref|YP_007433577.1| - 9.6e-08 31.8 13.3 0.00025 21.0 5.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|449066495|ref|YP_007433577.1| - 2.4e-05 24.8 9.6 0.031 14.8 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|449066495|ref|YP_007433577.1| - 3.7e-05 24.6 8.6 0.0077 17.1 3.0 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|449066495|ref|YP_007433577.1| - 5.4e-05 23.0 11.0 0.03 14.4 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|449066495|ref|YP_007433577.1| - 7.3e-05 23.1 7.6 0.0013 19.2 8.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449066495|ref|YP_007433577.1| - 9e-05 22.9 1.1 0.35 11.5 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|449066495|ref|YP_007433577.1| - 0.00022 21.9 13.7 0.012 16.5 6.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449066495|ref|YP_007433577.1| - 0.00029 21.1 8.2 0.045 14.3 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|449066495|ref|YP_007433577.1| - 0.0011 19.1 0.9 0.0012 18.9 0.9 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|449066495|ref|YP_007433577.1| - 0.0041 17.3 9.3 0.014 15.6 2.8 2.1 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|449066495|ref|YP_007433577.1| - 0.033 14.9 11.8 0.4 11.4 0.3 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF2761 PF10959.8 gi|449066495|ref|YP_007433577.1| - 0.056 13.4 0.0 0.072 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Fer4_22 PF17179.4 gi|449066495|ref|YP_007433577.1| - 2.5 9.0 8.3 9 7.2 2.4 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain DFP PF04127.15 gi|449066496|ref|YP_007433578.1| - 5.8e-59 199.1 0.2 2.3e-57 193.9 0.1 2.4 2 1 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|449066496|ref|YP_007433578.1| - 5.5e-40 136.7 0.4 1e-39 135.8 0.4 1.5 1 0 0 1 1 1 1 Flavoprotein ATP-synt_F PF01990.17 gi|449066496|ref|YP_007433578.1| - 0.015 15.6 0.6 1.1 9.6 0.0 3.3 3 2 1 4 4 4 0 ATP synthase (F/14-kDa) subunit FlpD PF02662.16 gi|449066496|ref|YP_007433578.1| - 0.17 11.8 0.0 1 9.4 0.0 2.2 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Acetyltransf_1 PF00583.25 gi|449066497|ref|YP_007433579.1| - 5e-15 55.8 0.0 6.3e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|449066497|ref|YP_007433579.1| - 6.3e-10 39.4 0.1 9.7e-10 38.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|449066497|ref|YP_007433579.1| - 1.9e-08 34.3 0.0 4.7e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|449066497|ref|YP_007433579.1| - 2.9e-06 27.2 0.0 4.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|449066497|ref|YP_007433579.1| - 0.00089 19.3 0.0 0.0039 17.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|449066497|ref|YP_007433579.1| - 0.0044 16.7 0.0 0.01 15.5 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|449066497|ref|YP_007433579.1| - 0.012 15.1 0.4 0.021 14.3 0.4 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_4 PF13420.7 gi|449066497|ref|YP_007433579.1| - 0.027 14.6 1.3 0.52 10.4 1.3 2.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Metallophos_2 PF12850.7 gi|449066498|ref|YP_007433580.1| - 1.8e-05 25.0 0.0 2.3e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|449066498|ref|YP_007433580.1| - 5.7e-05 22.6 0.1 0.0049 16.2 0.0 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Thr_dehydrat_C PF00585.18 gi|449066498|ref|YP_007433580.1| - 0.052 13.3 0.7 0.66 9.8 0.0 2.6 1 1 2 3 3 3 0 C-terminal regulatory domain of Threonine dehydratase CitG PF01874.16 gi|449066499|ref|YP_007433581.1| - 2.8e-36 125.6 0.0 3.2e-36 125.4 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Lipoprotein_3 PF00938.17 gi|449066499|ref|YP_007433581.1| - 0.13 12.5 0.1 0.34 11.1 0.1 1.8 1 1 0 1 1 1 0 Lipoprotein NTP_transf_2 PF01909.23 gi|449066500|ref|YP_007433582.1| - 2.1e-08 34.4 0.2 4.6e-08 33.2 0.2 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|449066500|ref|YP_007433582.1| - 0.014 15.4 0.1 0.036 14.1 0.1 1.8 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase DUF2540 PF10802.8 gi|449066500|ref|YP_007433582.1| - 0.062 13.4 0.1 0.17 12.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) DUF1464 PF07318.12 gi|449066501|ref|YP_007433583.1| - 5.4e-114 380.7 0.0 6.5e-114 380.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) PIN PF01850.21 gi|449066504|ref|YP_007433586.1| - 5.4e-11 43.1 3.3 2.9e-10 40.7 3.3 1.8 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|449066504|ref|YP_007433586.1| - 0.018 14.8 0.1 0.03 14.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Band_7 PF01145.25 gi|449066504|ref|YP_007433586.1| - 0.044 13.8 0.3 0.053 13.5 0.3 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family Ribosomal_L18A PF01775.17 gi|449066504|ref|YP_007433586.1| - 0.044 13.9 0.2 0.099 12.7 0.2 1.6 1 1 0 1 1 1 0 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Spore_YhcN_YlaJ PF09580.10 gi|449066504|ref|YP_007433586.1| - 0.47 10.5 2.1 1.1 9.3 0.1 2.1 3 0 0 3 3 3 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) VAPB_antitox PF02697.14 gi|449066505|ref|YP_007433587.1| - 9.1e-24 84.0 2.8 1e-23 83.9 2.8 1.0 1 0 0 1 1 1 1 Putative antitoxin DUF3387 PF11867.8 gi|449066505|ref|YP_007433587.1| - 0.01 15.3 0.6 0.011 15.1 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3387) VWA_N PF08399.11 gi|449066505|ref|YP_007433587.1| - 0.016 15.7 0.0 0.031 14.8 0.0 1.4 1 1 0 1 1 1 0 VWA N-terminal DUF5532 PF17673.1 gi|449066505|ref|YP_007433587.1| - 0.025 14.6 0.2 0.027 14.5 0.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5532) SKA1 PF07160.12 gi|449066505|ref|YP_007433587.1| - 0.028 14.3 0.2 0.029 14.2 0.2 1.1 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 DegV PF02645.16 gi|449066505|ref|YP_007433587.1| - 0.028 13.7 0.1 0.03 13.7 0.1 1.0 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 MatP_C PF17414.2 gi|449066505|ref|YP_007433587.1| - 0.031 14.5 0.2 0.11 12.7 0.0 1.8 1 1 1 2 2 2 0 MatP C-terminal ribbon-helix-helix domain DUF87 PF01935.17 gi|449066506|ref|YP_007433588.1| - 0.00012 22.3 0.6 0.00035 20.7 0.1 2.1 3 0 0 3 3 3 1 Helicase HerA, central domain NurA PF09376.10 gi|449066507|ref|YP_007433589.1| - 0.00052 19.8 1.5 0.00052 19.8 1.5 1.9 1 1 1 2 2 2 1 NurA domain PAPS_reduct PF01507.19 gi|449066508|ref|YP_007433590.1| - 1.5e-16 61.0 0.0 3.1e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|449066508|ref|YP_007433590.1| - 0.0084 15.9 0.0 0.3 10.8 0.0 2.4 3 0 0 3 3 3 1 PP-loop family QueC PF06508.13 gi|449066508|ref|YP_007433590.1| - 0.026 14.0 0.0 0.11 12.0 0.0 2.0 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|449066508|ref|YP_007433590.1| - 0.12 11.4 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 NAD synthase VirArc_Nuclease PF12187.8 gi|449066509|ref|YP_007433591.1| - 2.9e-107 356.4 8.0 3.4e-107 356.2 8.0 1.0 1 0 0 1 1 1 1 Viral/Archaeal nuclease Myotub-related PF06602.14 gi|449066509|ref|YP_007433591.1| - 0.019 13.9 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain Minor_capsid_3 PF12691.7 gi|449066510|ref|YP_007433592.1| - 0.073 13.4 0.4 0.1 13.0 0.2 1.3 1 1 0 1 1 1 0 Minor capsid protein from bacteriophage RD3 PF14473.6 gi|449066510|ref|YP_007433592.1| - 0.075 12.9 2.4 0.11 12.4 1.7 1.5 1 1 0 1 1 1 0 RD3 protein YebO PF13974.6 gi|449066510|ref|YP_007433592.1| - 1.7 8.7 7.4 0.21 11.7 3.7 1.3 2 0 0 2 2 2 0 YebO-like protein RHH_1 PF01402.21 gi|449066511|ref|YP_007433593.1| - 6.8e-08 32.2 0.5 8.3e-08 31.9 0.5 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|449066511|ref|YP_007433593.1| - 0.00019 21.3 0.3 0.00022 21.1 0.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain SWIM PF04434.17 gi|449066512|ref|YP_007433594.1| - 0.004 16.8 1.0 0.006 16.2 1.0 1.2 1 0 0 1 1 1 1 SWIM zinc finger HTH_27 PF13463.6 gi|449066515|ref|YP_007433597.1| - 0.00086 19.8 0.0 0.0013 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|449066515|ref|YP_007433597.1| - 0.001 18.9 0.1 0.0014 18.4 0.1 1.2 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|449066515|ref|YP_007433597.1| - 0.0032 17.4 0.3 0.0038 17.2 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|449066515|ref|YP_007433597.1| - 0.0054 16.5 0.0 0.0064 16.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|449066515|ref|YP_007433597.1| - 0.036 13.9 0.2 0.071 13.0 0.2 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|449066515|ref|YP_007433597.1| - 0.1 12.4 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|449066516|ref|YP_007433598.1| - 0.0023 17.9 1.5 0.0032 17.4 1.5 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|449066516|ref|YP_007433598.1| - 0.0039 17.0 0.4 0.0046 16.7 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|449066516|ref|YP_007433598.1| - 0.029 14.2 0.7 0.16 11.8 0.1 1.9 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) PadR PF03551.14 gi|449066516|ref|YP_007433598.1| - 0.041 13.9 0.5 0.064 13.2 0.5 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|449066516|ref|YP_007433598.1| - 0.041 14.4 0.0 0.052 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF5493 PF17597.2 gi|449066516|ref|YP_007433598.1| - 0.056 13.7 0.0 0.074 13.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5493) NodZ PF05830.11 gi|449066516|ref|YP_007433598.1| - 0.089 11.6 0.0 0.092 11.6 0.0 1.0 1 0 0 1 1 1 0 Nodulation protein Z (NodZ) PadR PF03551.14 gi|449066517|ref|YP_007433599.1| - 0.0019 18.1 2.5 0.011 15.6 0.1 2.5 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family SieB PF14163.6 gi|449066517|ref|YP_007433599.1| - 0.01 15.3 0.9 0.026 14.0 0.9 2.0 1 1 0 1 1 1 0 Super-infection exclusion protein B Spore_III_AB PF09548.10 gi|449066517|ref|YP_007433599.1| - 0.033 14.3 1.0 0.042 14.0 1.0 1.2 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) HxlR PF01638.17 gi|449066517|ref|YP_007433599.1| - 0.056 13.3 2.0 1 9.2 0.2 2.3 1 1 0 2 2 2 0 HxlR-like helix-turn-helix DUF1495 PF07381.11 gi|449066517|ref|YP_007433599.1| - 0.092 12.6 0.6 0.57 10.0 0.2 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) PsbP PF01789.16 gi|449066517|ref|YP_007433599.1| - 0.19 11.8 2.3 1.7 8.8 0.1 2.0 1 1 1 2 2 2 0 PsbP DUF3116 PF11313.8 gi|449066517|ref|YP_007433599.1| - 0.66 9.9 5.0 11 6.0 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3116) HTH_34 PF13601.6 gi|449066518|ref|YP_007433600.1| - 0.00027 21.1 0.1 0.00033 20.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|449066518|ref|YP_007433600.1| - 0.0007 19.5 0.0 0.001 19.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|449066518|ref|YP_007433600.1| - 0.00092 19.7 0.0 0.0013 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|449066518|ref|YP_007433600.1| - 0.0073 16.2 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 MarR family CM_2 PF01817.21 gi|449066518|ref|YP_007433600.1| - 0.0081 16.5 0.0 0.026 14.9 0.0 1.9 1 1 0 1 1 1 1 Chorismate mutase type II HTH_IclR PF09339.10 gi|449066518|ref|YP_007433600.1| - 0.01 15.6 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|449066518|ref|YP_007433600.1| - 0.013 15.4 0.1 0.021 14.7 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|449066518|ref|YP_007433600.1| - 0.16 11.4 0.2 0.57 9.6 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|449066519|ref|YP_007433601.1| - 4.4e-08 32.9 0.1 6.9e-08 32.3 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|449066519|ref|YP_007433601.1| - 2.9e-05 23.8 0.3 3.5e-05 23.6 0.3 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|449066519|ref|YP_007433601.1| - 0.0002 20.9 0.1 0.00027 20.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|449066519|ref|YP_007433601.1| - 0.0012 18.7 0.6 0.0024 17.7 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|449066519|ref|YP_007433601.1| - 0.0028 17.5 0.1 0.0049 16.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|449066519|ref|YP_007433601.1| - 0.0036 17.8 0.1 0.0093 16.4 0.1 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|449066519|ref|YP_007433601.1| - 0.0037 17.4 0.1 0.0046 17.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|449066519|ref|YP_007433601.1| - 0.006 16.5 0.2 0.0099 15.8 0.2 1.3 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 gi|449066519|ref|YP_007433601.1| - 0.025 14.6 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator PadR PF03551.14 gi|449066519|ref|YP_007433601.1| - 0.033 14.1 0.0 0.048 13.6 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|449066519|ref|YP_007433601.1| - 0.046 13.6 0.1 0.16 11.8 0.1 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) GntR PF00392.21 gi|449066519|ref|YP_007433601.1| - 0.067 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sun2_CC2 PF18580.1 gi|449066519|ref|YP_007433601.1| - 0.079 13.2 0.3 0.079 13.2 0.3 2.0 3 0 0 3 3 3 0 SUN2 coiled coil domain 2 MotA_activ PF09114.10 gi|449066519|ref|YP_007433601.1| - 0.087 13.0 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_9 PF08221.11 gi|449066519|ref|YP_007433601.1| - 0.16 12.1 1.1 0.21 11.7 0.3 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MazE_antitoxin PF04014.18 gi|449066521|ref|YP_007433603.1| - 0.0041 17.0 0.1 0.006 16.5 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin AUX_IAA PF02309.16 gi|449066521|ref|YP_007433603.1| - 0.14 12.0 0.1 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 AUX/IAA family MGDG_synth PF06925.11 gi|449066522|ref|YP_007433604.1| - 0.062 13.4 0.2 0.087 12.9 0.2 1.3 1 1 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase DUF3416 PF11896.8 gi|449066522|ref|YP_007433604.1| - 0.11 12.8 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) OrfB_IS605 PF01385.19 gi|449066523|ref|YP_007433605.1| - 1.4e-29 102.7 0.0 2.9e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|449066523|ref|YP_007433605.1| - 9.6e-21 73.5 0.1 2.8e-20 72.0 0.1 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain SPT16 PF08644.11 gi|449066523|ref|YP_007433605.1| - 0.05 13.8 0.9 7.9 6.6 0.0 2.5 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) Terminase_2 PF03592.16 gi|449066523|ref|YP_007433605.1| - 0.053 14.0 0.0 0.39 11.2 0.0 2.2 2 0 0 2 2 2 0 Terminase small subunit RuvX PF03652.15 gi|449066523|ref|YP_007433605.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction resolvase DUF3562 PF12085.8 gi|449066523|ref|YP_007433605.1| - 0.13 11.9 0.4 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) MarR PF01047.22 gi|449066524|ref|YP_007433606.1| - 6.9e-07 29.1 0.0 1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|449066524|ref|YP_007433606.1| - 0.00023 21.0 0.3 0.00038 20.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|449066524|ref|YP_007433606.1| - 0.00045 20.0 0.1 0.00058 19.7 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449066524|ref|YP_007433606.1| - 0.0012 18.7 0.1 0.0014 18.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449066524|ref|YP_007433606.1| - 0.029 13.9 0.1 0.06 12.9 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|449066524|ref|YP_007433606.1| - 0.057 13.4 0.1 0.073 13.0 0.1 1.2 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|449066524|ref|YP_007433606.1| - 0.07 13.0 0.3 0.1 12.4 0.3 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|449066524|ref|YP_007433606.1| - 0.079 13.1 0.0 0.096 12.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|449066524|ref|YP_007433606.1| - 0.088 13.3 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|449066524|ref|YP_007433606.1| - 0.11 12.5 0.1 0.23 11.5 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|449066525|ref|YP_007433607.1| - 2.1e-07 30.7 0.2 2.7e-07 30.4 0.2 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449066525|ref|YP_007433607.1| - 1.1e-06 28.5 0.1 1.4e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449066525|ref|YP_007433607.1| - 1.1e-06 28.0 0.2 1.6e-06 27.6 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|449066525|ref|YP_007433607.1| - 1e-05 25.5 0.2 1.6e-05 24.9 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|449066525|ref|YP_007433607.1| - 8.5e-05 23.0 0.1 0.00016 22.1 0.1 1.5 1 1 1 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|449066525|ref|YP_007433607.1| - 0.00077 19.3 0.1 0.0034 17.2 0.1 1.8 1 1 1 2 2 2 1 HxlR-like helix-turn-helix DUF1495 PF07381.11 gi|449066525|ref|YP_007433607.1| - 0.0008 19.2 0.1 0.019 14.8 0.1 2.1 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_IclR PF09339.10 gi|449066525|ref|YP_007433607.1| - 0.0018 18.0 0.1 0.0026 17.5 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|449066525|ref|YP_007433607.1| - 0.0022 18.0 0.0 0.0037 17.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.22 gi|449066525|ref|YP_007433607.1| - 0.0043 16.9 0.1 0.0057 16.5 0.1 1.2 1 0 0 1 1 1 1 MarR family SMC_ScpB PF04079.16 gi|449066525|ref|YP_007433607.1| - 0.0055 16.3 0.2 0.0061 16.2 0.2 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Penicillinase_R PF03965.16 gi|449066525|ref|YP_007433607.1| - 0.0097 16.2 0.0 0.012 16.0 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor TFIIE_alpha PF02002.17 gi|449066525|ref|YP_007433607.1| - 0.015 15.1 0.2 0.022 14.6 0.2 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.11 gi|449066525|ref|YP_007433607.1| - 0.02 15.6 0.0 0.028 15.1 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal DprA_WH PF17782.1 gi|449066525|ref|YP_007433607.1| - 0.024 14.7 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain B-block_TFIIIC PF04182.12 gi|449066525|ref|YP_007433607.1| - 0.027 14.6 0.0 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC PadR PF03551.14 gi|449066525|ref|YP_007433607.1| - 0.092 12.7 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|449066525|ref|YP_007433607.1| - 0.099 12.8 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_47 PF16221.5 gi|449066525|ref|YP_007433607.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|449066525|ref|YP_007433607.1| - 0.18 11.8 1.9 1.1 9.3 0.8 2.5 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain Sdh_cyt PF01127.22 gi|449066526|ref|YP_007433608.1| - 0.15 12.1 3.2 0.19 11.8 3.2 1.1 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF1722 PF08349.11 gi|449066531|ref|YP_007433613.1| - 0.048 14.0 1.0 0.14 12.4 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1722) phiKZ_IP PF12699.7 gi|449066531|ref|YP_007433613.1| - 0.055 12.6 0.3 0.83 8.7 0.1 2.2 2 0 0 2 2 2 0 phiKZ-like phage internal head proteins PIN_12 PF16289.5 gi|449066532|ref|YP_007433614.1| - 2.2e-06 28.3 2.9 2.2e-06 28.3 2.9 2.7 1 1 2 3 3 3 1 PIN domain PIN PF01850.21 gi|449066532|ref|YP_007433614.1| - 0.0066 16.9 1.1 0.016 15.7 0.1 2.2 2 1 0 2 2 2 1 PIN domain Nod1 PF17114.5 gi|449066532|ref|YP_007433614.1| - 0.072 13.2 2.5 0.12 12.5 0.1 2.5 2 1 1 3 3 3 0 Gef2-related medial cortical node protein Nod1 CdiI_2 PF18593.1 gi|449066532|ref|YP_007433614.1| - 0.16 12.6 2.5 0.19 12.4 0.2 2.2 3 0 0 3 3 3 0 CdiI immunity protein DUF883 PF05957.13 gi|449066532|ref|YP_007433614.1| - 0.16 12.6 0.2 5.3 7.7 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) PIN_8 PF18476.1 gi|449066532|ref|YP_007433614.1| - 0.24 11.2 6.0 0.056 13.3 1.6 2.1 2 1 0 2 2 2 0 PIN like domain Nitrate_red_del PF02613.15 gi|449066534|ref|YP_007433616.1| - 0.026 14.5 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Nitrate reductase delta subunit DUF4028 PF13220.6 gi|449066534|ref|YP_007433616.1| - 0.082 12.7 0.8 0.22 11.3 0.0 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF4028) SWIRM PF04433.17 gi|449066534|ref|YP_007433616.1| - 0.084 13.2 1.5 0.94 9.9 0.2 2.5 1 1 1 2 2 2 0 SWIRM domain DUF2408 PF10303.9 gi|449066535|ref|YP_007433617.1| - 0.0018 18.8 5.7 0.22 12.1 0.0 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF2408) HrcA_DNA-bdg PF03444.15 gi|449066535|ref|YP_007433617.1| - 0.0034 17.0 3.4 0.033 13.8 0.2 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Globin PF00042.22 gi|449066535|ref|YP_007433617.1| - 0.048 14.2 0.6 6.2 7.4 0.0 2.5 2 0 0 2 2 2 0 Globin CLTH PF10607.9 gi|449066535|ref|YP_007433617.1| - 0.11 12.4 6.6 0.064 13.1 2.3 2.2 1 1 0 2 2 2 0 CTLH/CRA C-terminal to LisH motif domain Sas10_Utp3 PF04000.15 gi|449066535|ref|YP_007433617.1| - 0.29 11.8 0.1 0.29 11.8 0.1 3.0 3 1 0 3 3 3 0 Sas10/Utp3/C1D family DUF643 PF04867.12 gi|449066535|ref|YP_007433617.1| - 0.92 10.1 7.1 11 6.7 0.3 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF643) Snapin_Pallidin PF14712.6 gi|449066535|ref|YP_007433617.1| - 1.5 9.2 8.2 0.23 11.9 0.8 2.8 3 0 0 3 3 3 0 Snapin/Pallidin Trm5_N PF18093.1 gi|449066537|ref|YP_007433619.1| - 0.11 12.4 2.2 1.4 8.9 0.1 2.2 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain Snapin_Pallidin PF14712.6 gi|449066538|ref|YP_007433620.1| - 0.012 16.0 0.5 0.012 16.0 0.5 3.1 3 1 1 4 4 4 0 Snapin/Pallidin Dpoe2NT PF12213.8 gi|449066538|ref|YP_007433620.1| - 0.18 12.1 2.3 4.4 7.7 0.1 3.1 3 0 0 3 3 3 0 DNA polymerases epsilon N terminal GST_C_3 PF14497.6 gi|449066538|ref|YP_007433620.1| - 0.21 11.8 1.7 0.48 10.7 0.2 2.6 2 1 1 3 3 3 0 Glutathione S-transferase, C-terminal domain DUF1495 PF07381.11 gi|449066539|ref|YP_007433621.1| - 0.017 14.9 0.3 7.2 6.5 0.1 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) DUF4065 PF13274.6 gi|449066539|ref|YP_007433621.1| - 0.054 14.4 0.0 0.11 13.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) PNPase PF03726.14 gi|449066539|ref|YP_007433621.1| - 2.1 8.9 5.7 23 5.6 0.2 2.9 2 1 1 3 3 3 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain HTH_OrfB_IS605 PF12323.8 gi|449066541|ref|YP_007433623.1| - 0.012 15.0 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain OrfB_IS605 PF01385.19 gi|449066542|ref|YP_007433624.1| - 1.4e-29 102.8 0.3 2.1e-28 99.0 0.1 2.2 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|449066542|ref|YP_007433624.1| - 2.4e-06 27.4 0.0 4.7e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TBCA PF02970.16 gi|449066542|ref|YP_007433624.1| - 0.0021 18.3 0.4 0.0048 17.2 0.4 1.5 1 0 0 1 1 1 1 Tubulin binding cofactor A Peptidase_M48 PF01435.18 gi|449066544|ref|YP_007433626.1| - 0.16 11.7 0.2 0.87 9.3 0.1 2.0 1 1 1 2 2 2 0 Peptidase family M48 DUF309 PF03745.14 gi|449066545|ref|YP_007433627.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF309) DUF1122 PF06557.11 gi|449066549|ref|YP_007433631.1| - 0.42 10.0 3.3 6.3 6.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1122) DUF1241 PF06840.11 gi|449066552|ref|YP_007433634.1| - 0.074 12.7 1.3 4.2 7.0 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1241) SNAP PF14938.6 gi|449066552|ref|YP_007433634.1| - 0.088 12.2 0.1 0.088 12.2 0.1 1.6 2 0 0 2 2 2 0 Soluble NSF attachment protein, SNAP Phage_integr_3 PF16795.5 gi|449066553|ref|YP_007433635.1| - 6.5e-48 162.7 0.3 3.3e-47 160.4 0.1 1.9 2 0 0 2 2 2 1 Archaeal phage integrase Phage_integrase PF00589.22 gi|449066553|ref|YP_007433635.1| - 0.005 16.6 0.0 1.3 8.8 0.0 2.6 3 0 0 3 3 3 2 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|449066553|ref|YP_007433635.1| - 0.13 12.7 0.9 3.3 8.3 0.0 3.1 3 1 1 4 4 4 0 Phage integrase, N-terminal SAM-like domain ATPase_2 PF01637.18 gi|449066555|ref|YP_007433637.1| - 4.6e-24 85.6 2.7 4.6e-24 85.6 2.7 3.1 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|449066555|ref|YP_007433637.1| - 4.2e-20 72.0 3.3 6.5e-20 71.4 1.1 2.4 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|449066555|ref|YP_007433637.1| - 4.7e-10 39.6 0.9 1e-09 38.5 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|449066555|ref|YP_007433637.1| - 2.8e-05 24.6 0.1 0.0055 17.1 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain HTH_5 PF01022.20 gi|449066555|ref|YP_007433637.1| - 5.9e-05 22.8 0.0 0.00017 21.4 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|449066555|ref|YP_007433637.1| - 8.6e-05 22.0 0.1 0.00059 19.3 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|449066555|ref|YP_007433637.1| - 0.00017 21.4 0.0 0.00038 20.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|449066555|ref|YP_007433637.1| - 0.00018 21.4 0.8 0.0021 18.0 0.0 3.0 3 1 0 3 3 3 1 Winged helix-turn-helix AAA_22 PF13401.6 gi|449066555|ref|YP_007433637.1| - 0.00049 20.4 0.1 0.0014 18.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|449066555|ref|YP_007433637.1| - 0.00064 19.2 0.2 0.0069 15.8 0.0 2.5 3 0 0 3 3 3 1 Bacterial TniB protein TrmB PF01978.19 gi|449066555|ref|YP_007433637.1| - 0.00076 19.3 0.2 0.0021 17.9 0.2 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449066555|ref|YP_007433637.1| - 0.0051 16.7 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family Sulfolobus_pRN PF05584.11 gi|449066555|ref|YP_007433637.1| - 0.017 15.2 0.7 0.037 14.1 0.1 1.9 2 0 0 2 2 1 0 Sulfolobus plasmid regulatory protein AAA PF00004.29 gi|449066555|ref|YP_007433637.1| - 0.022 15.2 0.0 0.066 13.6 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Roc PF08477.13 gi|449066555|ref|YP_007433637.1| - 0.091 13.0 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase HTH_IclR PF09339.10 gi|449066555|ref|YP_007433637.1| - 0.2 11.5 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|449066557|ref|YP_007433639.1| - 2.2e-10 40.6 0.1 2.7e-10 40.3 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|449066557|ref|YP_007433639.1| - 5.2e-06 26.2 0.2 0.00035 20.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|449066557|ref|YP_007433639.1| - 0.00055 19.8 0.1 0.00078 19.4 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|449066557|ref|YP_007433639.1| - 0.0053 16.8 0.0 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Nitroreductase PF00881.24 gi|449066559|ref|YP_007433641.1| - 2.5e-21 76.5 0.0 4e-21 75.8 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|449066559|ref|YP_007433641.1| - 0.0053 16.4 0.3 0.29 10.7 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase YcaO PF02624.16 gi|449066560|ref|YP_007433642.1| - 2.1e-42 145.5 0.0 2.5e-42 145.3 0.0 1.0 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding IF-2B PF01008.17 gi|449066561|ref|YP_007433643.1| - 0.013 14.7 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Initiation factor 2 subunit family DKNYY PF13644.6 gi|449066561|ref|YP_007433643.1| - 0.021 15.6 2.5 0.027 15.2 2.5 1.3 1 0 0 1 1 1 0 DKNYY family ABC_tran PF00005.27 gi|449066565|ref|YP_007433647.1| - 6.9e-18 65.5 0.0 9.8e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449066565|ref|YP_007433647.1| - 2.7e-13 50.4 0.6 2e-06 27.9 0.8 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449066565|ref|YP_007433647.1| - 9.3e-10 38.3 0.1 0.00013 21.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|449066565|ref|YP_007433647.1| - 4.6e-06 27.3 1.3 5.8e-06 26.9 1.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|449066565|ref|YP_007433647.1| - 1.8e-05 23.6 0.2 0.00072 18.3 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|449066565|ref|YP_007433647.1| - 0.00021 21.7 0.0 0.00032 21.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|449066565|ref|YP_007433647.1| - 0.00024 20.8 0.3 0.00041 20.0 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|449066565|ref|YP_007433647.1| - 0.00052 19.8 0.3 0.0051 16.6 0.3 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|449066565|ref|YP_007433647.1| - 0.0015 18.9 0.1 0.0027 18.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|449066565|ref|YP_007433647.1| - 0.0042 17.3 0.0 0.062 13.5 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|449066565|ref|YP_007433647.1| - 0.015 15.2 0.2 0.028 14.3 0.2 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|449066565|ref|YP_007433647.1| - 0.015 15.0 0.0 0.016 15.0 0.0 1.3 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|449066565|ref|YP_007433647.1| - 0.018 15.0 0.9 0.028 14.3 0.9 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|449066565|ref|YP_007433647.1| - 0.022 14.1 0.0 0.042 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_27 PF13514.6 gi|449066565|ref|YP_007433647.1| - 0.027 14.0 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|449066565|ref|YP_007433647.1| - 0.028 14.0 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|449066565|ref|YP_007433647.1| - 0.032 14.2 0.1 0.062 13.3 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|449066565|ref|YP_007433647.1| - 0.033 13.9 0.1 7.5 6.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|449066565|ref|YP_007433647.1| - 0.035 14.7 0.0 0.06 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|449066565|ref|YP_007433647.1| - 0.047 13.1 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF3584 PF12128.8 gi|449066565|ref|YP_007433647.1| - 0.049 11.1 0.3 0.065 10.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF815 PF05673.13 gi|449066565|ref|YP_007433647.1| - 0.05 12.8 0.2 0.17 11.0 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|449066565|ref|YP_007433647.1| - 0.058 13.4 0.1 0.12 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|449066565|ref|YP_007433647.1| - 0.08 12.9 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|449066565|ref|YP_007433647.1| - 0.099 12.9 0.2 0.14 12.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|449066565|ref|YP_007433647.1| - 0.099 11.7 0.7 0.17 10.9 0.7 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|449066565|ref|YP_007433647.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|449066565|ref|YP_007433647.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|449066565|ref|YP_007433647.1| - 0.13 12.4 0.1 1.4 9.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|449066565|ref|YP_007433647.1| - 0.26 11.5 0.4 0.44 10.8 0.2 1.5 2 0 0 2 2 1 0 AAA domain MFS_1 PF07690.16 gi|449066566|ref|YP_007433648.1| - 3e-05 23.1 21.7 4.1e-05 22.7 21.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily LacY_symp PF01306.19 gi|449066568|ref|YP_007433650.1| - 0.0043 15.9 1.1 0.0044 15.9 1.1 1.0 1 0 0 1 1 1 1 LacY proton/sugar symporter MFS_1 PF07690.16 gi|449066568|ref|YP_007433650.1| - 0.0081 15.1 3.7 0.0084 15.1 3.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily SSV1_ORF_D-335 PF07935.11 gi|449066570|ref|YP_007433652.1| - 1.5e-32 111.7 4.0 1.7e-32 111.5 4.0 1.1 1 0 0 1 1 1 1 ORF D-335-like protein ERGIC_N PF13850.6 gi|449066571|ref|YP_007433653.1| - 0.05 14.0 1.1 0.14 12.5 1.1 2.0 1 1 0 1 1 1 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) IF-2B PF01008.17 gi|449066572|ref|YP_007433654.1| - 1e-74 251.3 0.1 1.2e-74 251.1 0.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Ribosomal_L22 PF00237.19 gi|449066572|ref|YP_007433654.1| - 1.7 8.9 3.5 10 6.4 0.0 2.4 2 1 0 2 2 2 0 Ribosomal protein L22p/L17e SSV1_ORF_D-335 PF07935.11 gi|449066573|ref|YP_007433655.1| - 5.2e-09 36.3 1.3 5.4e-09 36.2 1.3 1.0 1 0 0 1 1 1 1 ORF D-335-like protein DHHA1 PF02272.19 gi|449066574|ref|YP_007433656.1| - 4e-10 40.2 0.0 2.6e-09 37.6 0.0 2.2 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|449066574|ref|YP_007433656.1| - 0.0055 16.9 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 DHH family CoA_binding_2 PF13380.6 gi|449066574|ref|YP_007433656.1| - 0.14 12.6 0.0 0.8 10.2 0.0 2.2 1 1 0 1 1 1 0 CoA binding domain Isochorismatase PF00857.20 gi|449066575|ref|YP_007433657.1| - 1.4e-38 132.8 0.0 1.7e-38 132.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Endonuclease_5 PF04493.14 gi|449066576|ref|YP_007433658.1| - 4.2e-34 118.0 0.1 6.2e-34 117.4 0.1 1.2 1 0 0 1 1 1 1 Endonuclease V DUF5607 PF18355.1 gi|449066576|ref|YP_007433658.1| - 0.031 14.7 1.0 0.064 13.7 1.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5607) DSPc PF00782.20 gi|449066577|ref|YP_007433659.1| - 9.5e-10 38.4 0.0 1.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|449066577|ref|YP_007433659.1| - 1.5e-09 37.8 0.0 1.7e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|449066577|ref|YP_007433659.1| - 8.1e-05 22.8 0.0 0.00014 22.0 0.0 1.4 1 1 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.12 gi|449066577|ref|YP_007433659.1| - 0.00027 20.6 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|449066577|ref|YP_007433659.1| - 0.0079 16.2 0.0 0.02 14.8 0.0 1.5 1 1 1 2 2 2 1 Tyrosine phosphatase family ATPase PF06745.13 gi|449066578|ref|YP_007433660.1| - 2.4e-57 194.0 0.1 2.8e-57 193.7 0.1 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|449066578|ref|YP_007433660.1| - 1.5e-09 37.7 0.0 2.2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|449066578|ref|YP_007433660.1| - 4.3e-08 32.7 0.0 6.6e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|449066578|ref|YP_007433660.1| - 3.9e-07 29.8 0.1 7.9e-07 28.8 0.0 1.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|449066578|ref|YP_007433660.1| - 1.2e-06 27.4 0.1 2.7e-06 26.3 0.1 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|449066578|ref|YP_007433660.1| - 3.6e-05 23.2 0.0 0.00011 21.7 0.0 2.0 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|449066578|ref|YP_007433660.1| - 6.9e-05 22.6 0.2 0.00021 21.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain MEDS PF14417.6 gi|449066578|ref|YP_007433660.1| - 0.00027 20.8 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.17 gi|449066578|ref|YP_007433660.1| - 0.00088 19.0 0.0 0.0018 18.0 0.0 1.6 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|449066578|ref|YP_007433660.1| - 0.0022 18.0 0.0 0.037 14.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|449066578|ref|YP_007433660.1| - 0.0037 17.6 0.0 0.0074 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_35 PF14516.6 gi|449066578|ref|YP_007433660.1| - 0.0082 15.0 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain Rsbr_N PF08678.10 gi|449066578|ref|YP_007433660.1| - 0.023 14.7 0.2 4.6 7.3 0.0 2.8 2 0 0 2 2 2 0 Rsbr N terminal PAXNEB PF05625.11 gi|449066578|ref|YP_007433660.1| - 0.033 13.3 0.0 0.078 12.1 0.0 1.6 1 0 0 1 1 1 0 PAXNEB protein NTPase_1 PF03266.15 gi|449066578|ref|YP_007433660.1| - 0.07 13.0 0.2 0.21 11.5 0.1 2.0 1 1 0 2 2 2 0 NTPase AAA PF00004.29 gi|449066578|ref|YP_007433660.1| - 0.095 13.1 0.1 0.26 11.7 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|449066578|ref|YP_007433660.1| - 0.097 12.6 0.5 0.31 10.9 0.5 2.1 1 1 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|449066578|ref|YP_007433660.1| - 0.11 12.8 0.3 0.28 11.5 0.3 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|449066578|ref|YP_007433660.1| - 0.11 12.9 0.0 0.51 10.8 0.0 2.0 2 1 0 2 2 2 0 RNA helicase Sigma54_activat PF00158.26 gi|449066578|ref|YP_007433660.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain QRPTase_C PF01729.19 gi|449066579|ref|YP_007433661.1| - 1.8e-64 216.6 0.4 2.3e-64 216.3 0.4 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|449066579|ref|YP_007433661.1| - 3.7e-19 68.5 0.0 2e-18 66.3 0.0 2.1 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain CCDC73 PF15818.5 gi|449066579|ref|YP_007433661.1| - 0.011 13.6 0.1 0.015 13.2 0.1 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 73 family TMP-TENI PF02581.17 gi|449066579|ref|YP_007433661.1| - 0.016 14.5 0.1 0.28 10.5 0.1 2.3 1 1 0 1 1 1 0 Thiamine monophosphate synthase NanE PF04131.14 gi|449066579|ref|YP_007433661.1| - 0.018 14.2 0.6 0.05 12.8 0.6 1.6 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase Methyltransf_30 PF05430.11 gi|449066579|ref|YP_007433661.1| - 0.025 14.5 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase YbfN PF13982.6 gi|449066579|ref|YP_007433661.1| - 0.2 12.0 0.0 0.35 11.2 0.0 1.3 1 0 0 1 1 1 0 YbfN-like lipoprotein GATase PF00117.28 gi|449066580|ref|YP_007433662.1| - 2e-35 122.3 0.0 2.5e-35 122.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449066580|ref|YP_007433662.1| - 7.8e-10 38.9 0.2 5.1e-09 36.2 0.1 2.2 2 1 0 2 2 2 1 Peptidase C26 SNO PF01174.19 gi|449066580|ref|YP_007433662.1| - 8e-06 25.8 0.1 0.035 13.9 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family HTS PF04204.16 gi|449066580|ref|YP_007433662.1| - 0.13 11.2 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Homoserine O-succinyltransferase FAD_binding_2 PF00890.24 gi|449066581|ref|YP_007433663.1| - 1.9e-74 251.3 0.0 2.5e-74 250.8 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|449066581|ref|YP_007433663.1| - 1.5e-08 34.2 0.4 0.00032 20.0 0.3 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|449066581|ref|YP_007433663.1| - 1.9e-06 27.7 0.5 0.00014 21.6 0.5 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|449066581|ref|YP_007433663.1| - 6.4e-06 26.2 0.1 0.00086 19.3 0.0 2.2 1 1 1 2 2 2 1 Fumarate reductase flavoprotein C-term GIDA PF01134.22 gi|449066581|ref|YP_007433663.1| - 0.00011 21.4 0.3 0.12 11.4 0.2 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|449066581|ref|YP_007433663.1| - 0.0014 17.5 0.5 0.029 13.1 0.2 2.7 2 1 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|449066581|ref|YP_007433663.1| - 0.0047 17.1 0.7 0.012 15.8 0.7 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|449066581|ref|YP_007433663.1| - 0.045 13.4 0.2 0.1 12.2 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|449066581|ref|YP_007433663.1| - 0.099 11.9 0.9 0.18 11.1 0.9 1.4 1 0 0 1 1 1 0 FAD binding domain DUF481 PF04338.12 gi|449066581|ref|YP_007433663.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF481 NUDIX PF00293.28 gi|449066582|ref|YP_007433664.1| - 2.9e-14 53.2 0.0 3.8e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|449066582|ref|YP_007433664.1| - 0.0048 16.9 0.0 0.007 16.3 0.0 1.5 1 1 0 1 1 1 1 NUDIX domain TIP49 PF06068.13 gi|449066583|ref|YP_007433665.1| - 1.3e-138 462.0 3.8 1.9e-138 461.5 3.8 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|449066583|ref|YP_007433665.1| - 4.1e-23 81.3 2.2 2e-22 79.1 0.6 2.7 3 0 0 3 3 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|449066583|ref|YP_007433665.1| - 4.8e-11 43.2 3.1 1.8e-08 34.9 0.1 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|449066583|ref|YP_007433665.1| - 1.7e-08 34.4 0.6 5e-07 29.6 0.1 2.8 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|449066583|ref|YP_007433665.1| - 5.1e-08 33.3 0.4 0.0088 16.3 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|449066583|ref|YP_007433665.1| - 3e-06 27.7 0.5 3.6e-05 24.2 0.5 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|449066583|ref|YP_007433665.1| - 1.3e-05 24.8 0.4 0.00054 19.5 0.1 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|449066583|ref|YP_007433665.1| - 8.6e-05 22.6 0.2 0.0033 17.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|449066583|ref|YP_007433665.1| - 0.00016 21.1 0.4 0.0012 18.3 0.1 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DnaB_C PF03796.15 gi|449066583|ref|YP_007433665.1| - 0.00068 19.1 0.2 0.0018 17.7 0.0 1.8 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|449066583|ref|YP_007433665.1| - 0.00073 19.3 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|449066583|ref|YP_007433665.1| - 0.00079 19.6 0.0 0.0017 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta2 PF13177.6 gi|449066583|ref|YP_007433665.1| - 0.00092 19.0 0.0 0.23 11.2 0.0 3.1 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_2 PF07724.14 gi|449066583|ref|YP_007433665.1| - 0.0012 19.0 0.2 0.0042 17.2 0.0 2.0 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.6 gi|449066583|ref|YP_007433665.1| - 0.0016 18.1 0.2 0.013 15.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|449066583|ref|YP_007433665.1| - 0.0024 17.6 0.1 0.021 14.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|449066583|ref|YP_007433665.1| - 0.0028 18.2 0.3 0.0091 16.5 0.0 2.2 3 1 0 3 3 1 1 AAA domain AAA_17 PF13207.6 gi|449066583|ref|YP_007433665.1| - 0.0055 17.1 0.4 0.028 14.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|449066583|ref|YP_007433665.1| - 0.0074 16.7 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 RNA helicase Rad17 PF03215.15 gi|449066583|ref|YP_007433665.1| - 0.013 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain PhoH PF02562.16 gi|449066583|ref|YP_007433665.1| - 0.014 14.9 0.2 0.03 13.8 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|449066583|ref|YP_007433665.1| - 0.015 15.3 0.5 0.52 10.3 0.1 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|449066583|ref|YP_007433665.1| - 0.017 15.6 0.0 0.044 14.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.6 gi|449066583|ref|YP_007433665.1| - 0.022 15.1 3.8 1.1 9.6 3.8 2.5 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|449066583|ref|YP_007433665.1| - 0.022 15.0 0.4 0.07 13.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|449066583|ref|YP_007433665.1| - 0.04 13.8 0.0 0.083 12.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.9 gi|449066583|ref|YP_007433665.1| - 0.04 13.2 0.0 0.068 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|449066583|ref|YP_007433665.1| - 0.047 12.8 0.0 0.077 12.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.6 gi|449066583|ref|YP_007433665.1| - 0.059 13.1 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|449066583|ref|YP_007433665.1| - 0.1 12.6 0.1 0.26 11.3 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|449066583|ref|YP_007433665.1| - 0.16 11.6 0.7 0.88 9.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain PfkB PF00294.24 gi|449066584|ref|YP_007433666.1| - 1.1e-33 116.9 0.0 2.2e-18 66.6 0.0 2.1 1 1 1 2 2 2 2 pfkB family carbohydrate kinase Diphtheria_T PF02764.14 gi|449066584|ref|YP_007433666.1| - 0.1 12.6 0.2 1.4 8.9 0.0 2.5 2 1 0 2 2 2 0 Diphtheria toxin, T domain IMS PF00817.20 gi|449066585|ref|YP_007433667.1| - 4.3e-44 150.1 0.3 8.1e-44 149.2 0.2 1.5 2 0 0 2 2 2 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|449066585|ref|YP_007433667.1| - 2.2e-09 37.1 0.0 6.6e-09 35.6 0.0 1.9 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|449066585|ref|YP_007433667.1| - 1.5e-05 25.5 0.2 4.8e-05 23.9 0.2 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF1805 PF08827.11 gi|449066585|ref|YP_007433667.1| - 0.002 18.5 0.2 0.17 12.3 0.2 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1805) Cdd1 PF11731.8 gi|449066585|ref|YP_007433667.1| - 0.0025 18.0 0.0 0.0052 17.0 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus BAF PF02961.14 gi|449066585|ref|YP_007433667.1| - 0.0028 18.0 0.0 0.015 15.7 0.0 2.1 2 0 0 2 2 2 1 Barrier to autointegration factor IMS_C PF11799.8 gi|449066585|ref|YP_007433667.1| - 0.021 15.5 0.6 0.35 11.6 0.6 2.4 1 1 0 1 1 1 0 impB/mucB/samB family C-terminal domain DNA_pol_lambd_f PF10391.9 gi|449066585|ref|YP_007433667.1| - 0.092 12.6 0.0 0.24 11.2 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda SRI PF08236.11 gi|449066585|ref|YP_007433667.1| - 0.11 12.7 1.9 1 9.6 0.2 2.5 2 0 0 2 2 2 0 SRI (Set2 Rpb1 interacting) domain DUF4217 PF13959.6 gi|449066586|ref|YP_007433668.1| - 0.01 16.0 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4217) DUF5099 PF17025.5 gi|449066586|ref|YP_007433668.1| - 0.056 13.8 1.6 0.081 13.3 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5099) RTC PF01137.21 gi|449066587|ref|YP_007433669.1| - 4.6e-77 258.2 0.1 5.4e-77 257.9 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|449066587|ref|YP_007433669.1| - 1.4e-20 73.7 0.1 2.3e-20 73.0 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain ADH_N PF08240.12 gi|449066588|ref|YP_007433670.1| - 2.7e-26 91.6 0.7 4.6e-26 90.8 0.7 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449066588|ref|YP_007433670.1| - 2.9e-16 59.6 0.0 8.3e-16 58.2 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449066588|ref|YP_007433670.1| - 1.5e-11 45.4 0.0 2.4e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|449066588|ref|YP_007433670.1| - 0.003 16.9 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|449066588|ref|YP_007433670.1| - 0.0056 17.1 0.0 0.0087 16.5 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Glu_dehyd_C PF16912.5 gi|449066588|ref|YP_007433670.1| - 0.0076 15.8 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ApbA PF02558.16 gi|449066588|ref|YP_007433670.1| - 0.03 14.0 0.0 0.058 13.0 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|449066588|ref|YP_007433670.1| - 0.067 13.5 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gln-synt_C PF00120.24 gi|449066589|ref|YP_007433671.1| - 4.1e-71 239.8 0.0 1.3e-70 238.1 0.0 1.7 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|449066589|ref|YP_007433671.1| - 0.00011 22.0 0.0 0.00019 21.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|449066589|ref|YP_007433671.1| - 0.015 15.0 0.0 0.91 9.3 0.0 3.1 3 1 0 3 3 3 0 Glutamine synthetase, beta-Grasp domain RNA12 PF10443.9 gi|449066589|ref|YP_007433671.1| - 0.19 10.4 0.1 0.29 9.8 0.1 1.1 1 0 0 1 1 1 0 RNA12 protein Met_10 PF02475.16 gi|449066590|ref|YP_007433672.1| - 9.1e-46 156.1 0.0 1.3e-45 155.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Fibrillarin PF01269.17 gi|449066590|ref|YP_007433672.1| - 0.0085 15.2 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin PrmA PF06325.13 gi|449066590|ref|YP_007433672.1| - 0.028 13.8 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF4112 PF13430.6 gi|449066590|ref|YP_007433672.1| - 0.14 12.5 0.1 0.27 11.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) Chal_sti_synt_N PF00195.19 gi|449066591|ref|YP_007433673.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Chalcone and stilbene synthases, N-terminal domain Peptidase_M54 PF07998.11 gi|449066592|ref|YP_007433674.1| - 1e-36 126.8 0.9 1.4e-36 126.4 0.9 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|449066592|ref|YP_007433674.1| - 0.00011 22.0 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M43 PF05572.13 gi|449066592|ref|YP_007433674.1| - 0.00032 20.6 0.8 0.00071 19.5 0.2 1.8 2 0 0 2 2 2 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.6 gi|449066592|ref|YP_007433674.1| - 0.00065 20.2 0.0 0.0008 19.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|449066592|ref|YP_007433674.1| - 0.0043 17.2 0.1 0.0043 17.2 0.1 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|449066592|ref|YP_007433674.1| - 0.0074 16.0 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|449066592|ref|YP_007433674.1| - 0.0086 14.7 0.1 0.012 14.3 0.1 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M66 PF10462.9 gi|449066592|ref|YP_007433674.1| - 0.021 13.8 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin PF01421.19 gi|449066592|ref|YP_007433674.1| - 0.024 14.6 1.5 0.09 12.7 0.1 2.0 2 0 0 2 2 2 0 Reprolysin (M12B) family zinc metalloprotease Peptidase_M57 PF12388.8 gi|449066592|ref|YP_007433674.1| - 0.063 12.9 0.1 0.096 12.3 0.1 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase DUF4953 PF16313.5 gi|449066592|ref|YP_007433674.1| - 0.084 12.1 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Archease PF01951.16 gi|449066593|ref|YP_007433675.1| - 8.5e-43 145.9 0.4 9.4e-43 145.8 0.4 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Insulin_TMD PF17870.1 gi|449066595|ref|YP_007433677.1| - 0.13 12.3 6.6 0.2 11.8 4.1 2.7 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment SLATT_fungal PF18142.1 gi|449066595|ref|YP_007433677.1| - 0.22 11.5 1.7 0.46 10.5 1.7 1.5 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain BTP PF05232.12 gi|449066596|ref|YP_007433678.1| - 2.5 8.2 6.7 4.7 7.3 2.1 2.1 2 0 0 2 2 2 0 Chlorhexidine efflux transporter Cytidylate_kin2 PF13189.6 gi|449066597|ref|YP_007433679.1| - 6.9e-21 75.2 0.4 1e-19 71.3 0.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|449066597|ref|YP_007433679.1| - 1.5e-18 67.6 0.1 1.9e-18 67.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|449066597|ref|YP_007433679.1| - 2.2e-15 56.9 0.1 4.2e-09 36.5 0.1 2.0 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|449066597|ref|YP_007433679.1| - 7.1e-11 42.7 0.0 1.3e-10 41.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|449066597|ref|YP_007433679.1| - 5.4e-06 26.4 0.3 0.065 13.1 0.0 2.2 1 1 0 2 2 2 2 Deoxynucleoside kinase SKI PF01202.22 gi|449066597|ref|YP_007433679.1| - 1.9e-05 24.8 0.5 4.3e-05 23.7 0.5 1.6 1 1 0 1 1 1 1 Shikimate kinase AAA_15 PF13175.6 gi|449066597|ref|YP_007433679.1| - 0.00013 21.8 0.3 0.00014 21.7 0.3 1.1 1 0 0 1 1 1 1 AAA ATPase domain ADK PF00406.22 gi|449066597|ref|YP_007433679.1| - 0.00024 21.2 0.0 0.0011 19.1 0.0 2.0 2 0 0 2 2 2 1 Adenylate kinase AAA_33 PF13671.6 gi|449066597|ref|YP_007433679.1| - 0.0003 20.9 0.0 0.062 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|449066597|ref|YP_007433679.1| - 0.00083 19.8 0.1 0.0015 19.0 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|449066597|ref|YP_007433679.1| - 0.0015 18.3 0.5 0.25 11.1 0.0 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family CoaE PF01121.20 gi|449066597|ref|YP_007433679.1| - 0.0018 18.0 0.0 0.4 10.3 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase Rad17 PF03215.15 gi|449066597|ref|YP_007433679.1| - 0.0023 17.9 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain Thymidylate_kin PF02223.17 gi|449066597|ref|YP_007433679.1| - 0.0062 16.2 0.2 1.1 8.9 0.1 2.4 1 1 0 2 2 2 1 Thymidylate kinase RNA_helicase PF00910.22 gi|449066597|ref|YP_007433679.1| - 0.0065 16.8 0.1 0.012 16.0 0.1 1.5 1 1 0 1 1 1 1 RNA helicase RuvB_N PF05496.12 gi|449066597|ref|YP_007433679.1| - 0.0069 16.1 0.2 0.019 14.7 0.1 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|449066597|ref|YP_007433679.1| - 0.0095 16.2 0.0 0.02 15.1 0.0 1.6 2 0 0 2 2 1 1 AAA domain KTI12 PF08433.10 gi|449066597|ref|YP_007433679.1| - 0.015 14.8 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|449066597|ref|YP_007433679.1| - 0.018 15.0 0.0 0.046 13.6 0.0 1.7 1 1 0 1 1 1 0 NTPase AAA_22 PF13401.6 gi|449066597|ref|YP_007433679.1| - 0.018 15.3 0.0 0.037 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|449066597|ref|YP_007433679.1| - 0.02 14.2 0.0 0.049 12.9 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 gi|449066597|ref|YP_007433679.1| - 0.021 14.8 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|449066597|ref|YP_007433679.1| - 0.031 14.7 0.1 0.076 13.4 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|449066597|ref|YP_007433679.1| - 0.039 14.5 0.5 0.057 13.9 0.4 1.4 1 1 0 1 1 1 0 ABC transporter UPF0160 PF03690.13 gi|449066597|ref|YP_007433679.1| - 0.067 12.8 0.1 0.073 12.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0160) AAA_24 PF13479.6 gi|449066597|ref|YP_007433679.1| - 0.068 12.9 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|449066597|ref|YP_007433679.1| - 0.07 13.0 0.0 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase Mg_chelatase PF01078.21 gi|449066597|ref|YP_007433679.1| - 0.076 12.4 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Ribosomal_L34e PF01199.18 gi|449066598|ref|YP_007433680.1| - 2.3e-19 69.5 2.4 2.7e-19 69.3 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e Zn_ribbon_SprT PF17283.2 gi|449066598|ref|YP_007433680.1| - 0.00079 19.3 2.9 0.047 13.6 0.2 2.4 2 1 0 2 2 2 2 SprT-like zinc ribbon domain zf-FLZ PF04570.14 gi|449066598|ref|YP_007433680.1| - 0.012 15.0 0.3 0.012 15.0 0.3 1.8 2 0 0 2 2 2 0 zinc-finger of the FCS-type, C2-C2 zf-P11 PF03854.14 gi|449066598|ref|YP_007433680.1| - 0.013 15.1 1.8 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 P-11 zinc finger Gin PF10764.9 gi|449066598|ref|YP_007433680.1| - 0.015 15.3 1.0 0.065 13.2 1.0 2.0 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin zinc_ribbon_12 PF11331.8 gi|449066598|ref|YP_007433680.1| - 0.14 12.0 2.2 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Probable zinc-ribbon domain Synaptobrevin PF00957.21 gi|449066599|ref|YP_007433681.1| - 0.00013 21.7 0.1 0.00013 21.7 0.1 2.3 3 0 0 3 3 3 1 Synaptobrevin SPC12 PF06645.13 gi|449066599|ref|YP_007433681.1| - 0.0039 17.3 1.5 0.0039 17.3 1.5 2.8 3 0 0 3 3 3 2 Microsomal signal peptidase 12 kDa subunit (SPC12) AAA_17 PF13207.6 gi|449066600|ref|YP_007433682.1| - 2.2e-34 118.8 0.0 2.8e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|449066600|ref|YP_007433682.1| - 4.2e-07 30.6 0.0 5.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|449066600|ref|YP_007433682.1| - 1e-05 25.3 0.2 0.089 12.5 0.0 2.9 2 1 0 3 3 3 2 Thymidylate kinase NTPase_1 PF03266.15 gi|449066600|ref|YP_007433682.1| - 0.00022 21.2 0.3 0.00042 20.3 0.3 1.4 1 0 0 1 1 1 1 NTPase SRP54 PF00448.22 gi|449066600|ref|YP_007433682.1| - 0.00022 20.9 0.1 0.00032 20.4 0.1 1.3 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|449066600|ref|YP_007433682.1| - 0.00043 20.1 0.2 0.0017 18.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449066600|ref|YP_007433682.1| - 0.00053 20.3 0.0 0.00072 19.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|449066600|ref|YP_007433682.1| - 0.00086 18.4 0.1 0.0014 17.7 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|449066600|ref|YP_007433682.1| - 0.0024 18.3 0.0 0.0028 18.1 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain ATP_bind_1 PF03029.17 gi|449066600|ref|YP_007433682.1| - 0.0027 17.5 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|449066600|ref|YP_007433682.1| - 0.0038 16.7 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|449066600|ref|YP_007433682.1| - 0.011 16.0 0.0 0.025 14.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|449066600|ref|YP_007433682.1| - 0.013 15.5 0.1 0.034 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|449066600|ref|YP_007433682.1| - 0.051 13.5 0.1 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|449066600|ref|YP_007433682.1| - 0.072 13.2 0.1 0.2 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|449066600|ref|YP_007433682.1| - 0.077 12.2 0.1 0.098 11.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|449066600|ref|YP_007433682.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SecY PF00344.20 gi|449066601|ref|YP_007433683.1| - 1.2e-56 192.2 31.1 1.7e-56 191.8 31.1 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|449066601|ref|YP_007433683.1| - 8e-09 35.2 2.4 8e-09 35.2 2.4 2.9 3 0 0 3 3 3 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|449066602|ref|YP_007433684.1| - 6.2e-16 59.2 6.1 1.5e-15 58.0 6.1 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RSRP PF17069.5 gi|449066602|ref|YP_007433684.1| - 0.035 13.7 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Arginine/Serine-Rich protein 1 Ribosomal_L30 PF00327.20 gi|449066603|ref|YP_007433685.1| - 3.4e-11 42.8 0.0 7.3e-11 41.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e DUF4368 PF14287.6 gi|449066603|ref|YP_007433685.1| - 0.0077 16.5 0.1 0.022 15.0 0.0 1.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4368) DUF1421 PF07223.11 gi|449066603|ref|YP_007433685.1| - 0.013 15.3 0.3 0.12 12.2 0.1 2.4 3 0 0 3 3 3 0 UBA-like domain (DUF1421) Ribosomal_S5 PF00333.20 gi|449066604|ref|YP_007433686.1| - 4.3e-20 71.4 0.2 8.2e-20 70.6 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|449066604|ref|YP_007433686.1| - 9.5e-19 66.6 0.1 3.4e-18 64.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Hs1pro-1_N PF07231.12 gi|449066604|ref|YP_007433686.1| - 0.012 15.4 0.0 0.03 14.1 0.0 1.6 2 0 0 2 2 2 0 Hs1pro-1 N-terminus Ribosomal_L5e PF17144.4 gi|449066605|ref|YP_007433687.1| - 4.9e-24 85.2 5.1 8e-18 65.0 1.8 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|449066605|ref|YP_007433687.1| - 3.8e-10 40.6 0.0 5.7e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.20 gi|449066606|ref|YP_007433688.1| - 1.5e-48 164.6 10.3 1.6e-48 164.4 10.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|449066607|ref|YP_007433689.1| - 1e-35 122.4 0.0 1.2e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|449066608|ref|YP_007433690.1| - 2.8e-29 101.6 7.8 3e-14 53.4 0.6 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 TubC_N PF18563.1 gi|449066608|ref|YP_007433690.1| - 0.12 12.4 0.7 1.5 8.8 0.0 2.6 2 1 1 3 3 3 0 TubC N-terminal docking domain CooT PF10133.9 gi|449066608|ref|YP_007433690.1| - 0.26 11.6 2.4 8 6.8 0.3 2.9 2 2 1 3 3 3 0 CO dehydrogenase accessory protein CooT Ribosomal_S8 PF00410.19 gi|449066609|ref|YP_007433691.1| - 6.1e-23 81.1 0.1 1e-22 80.4 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|449066610|ref|YP_007433692.1| - 3.1e-10 39.6 3.9 3.4e-10 39.5 3.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-HYPF PF07503.12 gi|449066610|ref|YP_007433692.1| - 0.00019 21.1 0.5 0.027 14.2 0.0 2.1 2 0 0 2 2 2 2 HypF finger Zn_Tnp_IS1595 PF12760.7 gi|449066610|ref|YP_007433692.1| - 0.0087 16.0 1.8 0.012 15.6 1.8 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-P11 PF03854.14 gi|449066610|ref|YP_007433692.1| - 0.042 13.5 1.0 0.058 13.1 1.0 1.2 1 0 0 1 1 1 0 P-11 zinc finger Ribosomal_L5_C PF00673.21 gi|449066611|ref|YP_007433693.1| - 3.3e-24 84.9 0.0 6.9e-24 83.8 0.0 1.6 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|449066611|ref|YP_007433693.1| - 2.7e-19 69.2 0.1 5.9e-19 68.2 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|449066612|ref|YP_007433694.1| - 3.3e-19 68.5 0.9 7.9e-19 67.4 0.2 2.0 2 0 0 2 2 2 1 Ribosomal family S4e S4 PF01479.25 gi|449066612|ref|YP_007433694.1| - 6.7e-13 48.1 0.2 1.4e-12 47.1 0.2 1.6 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.12 gi|449066612|ref|YP_007433694.1| - 2.3e-05 24.4 0.2 4.3e-05 23.5 0.2 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4_2 PF13275.6 gi|449066612|ref|YP_007433694.1| - 0.0021 17.8 0.0 0.0045 16.8 0.0 1.5 1 0 0 1 1 1 1 S4 domain Rad60-SLD PF11976.8 gi|449066612|ref|YP_007433694.1| - 0.0035 17.1 0.2 0.016 15.1 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-2 like Rad60 SUMO-like KOW PF00467.29 gi|449066612|ref|YP_007433694.1| - 0.05 13.6 0.0 0.16 12.0 0.0 1.9 1 0 0 1 1 1 0 KOW motif DUF5474 PF17568.2 gi|449066612|ref|YP_007433694.1| - 0.12 12.4 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5474) Ribosomal_L26 PF16906.5 gi|449066613|ref|YP_007433695.1| - 3.3e-30 104.4 0.5 4.8e-30 103.9 0.5 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|449066613|ref|YP_007433695.1| - 3.6e-07 29.9 2.3 6.9e-07 29.0 2.3 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|449066614|ref|YP_007433696.1| - 1.9e-36 124.8 0.1 2.2e-36 124.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|449066614|ref|YP_007433696.1| - 0.039 14.2 0.0 0.066 13.5 0.0 1.3 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.20 gi|449066615|ref|YP_007433697.1| - 1.2e-19 70.2 0.0 1.5e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|449066615|ref|YP_007433697.1| - 0.04 14.3 0.0 0.078 13.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|449066616|ref|YP_007433698.1| - 8.4e-15 54.5 0.0 9e-15 54.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|449066617|ref|YP_007433699.1| - 1.7e-18 66.3 6.6 2.1e-18 66.0 6.6 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF29 PF01724.16 gi|449066617|ref|YP_007433699.1| - 0.0011 19.2 1.3 0.0013 19.0 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF29 Ribosomal_S3_C PF00189.20 gi|449066618|ref|YP_007433700.1| - 1.8e-22 79.6 1.8 1.8e-22 79.6 1.8 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|449066618|ref|YP_007433700.1| - 2.8e-15 55.9 1.7 4.1e-15 55.4 0.0 2.1 3 0 0 3 3 3 1 KH domain KH_1 PF00013.29 gi|449066618|ref|YP_007433700.1| - 0.0056 16.5 1.2 0.04 13.7 0.2 2.5 2 0 0 2 2 2 1 KH domain Ribosomal_L22 PF00237.19 gi|449066619|ref|YP_007433701.1| - 1.6e-27 95.8 0.4 2.2e-27 95.3 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Cytokin-bind PF09265.10 gi|449066619|ref|YP_007433701.1| - 0.046 13.1 0.1 0.082 12.3 0.0 1.4 2 0 0 2 2 2 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Ribosomal_S19 PF00203.21 gi|449066620|ref|YP_007433702.1| - 1.5e-32 111.3 0.9 1.9e-32 111.0 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 DDR PF08841.10 gi|449066620|ref|YP_007433702.1| - 0.046 12.7 0.1 0.057 12.4 0.1 1.0 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Myb_DNA-bind_7 PF15963.5 gi|449066620|ref|YP_007433702.1| - 0.078 12.9 0.8 0.12 12.3 0.8 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Ribosomal_L2_C PF03947.18 gi|449066621|ref|YP_007433703.1| - 1.9e-41 141.2 2.4 3.4e-41 140.4 2.4 1.4 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|449066621|ref|YP_007433703.1| - 6.2e-13 48.5 0.0 2.2e-12 46.8 0.0 2.0 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|449066622|ref|YP_007433704.1| - 4.2e-13 49.5 11.1 3.1e-12 46.7 11.1 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 ASL_C PF08328.11 gi|449066622|ref|YP_007433704.1| - 0.0031 17.6 0.7 0.0036 17.4 0.7 1.1 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal TusA PF01206.17 gi|449066622|ref|YP_007433704.1| - 0.026 14.4 0.9 0.034 14.0 0.8 1.4 1 1 0 1 1 1 0 Sulfurtransferase TusA Ubiquitin_4 PF18036.1 gi|449066622|ref|YP_007433704.1| - 0.033 14.2 0.6 0.039 14.0 0.6 1.3 1 0 0 1 1 1 0 Ubiquitin-like domain Ribosomal_L4 PF00573.22 gi|449066623|ref|YP_007433705.1| - 2.8e-36 125.0 0.1 3.4e-36 124.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF2149 PF09919.9 gi|449066623|ref|YP_007433705.1| - 0.023 15.0 0.1 0.046 14.0 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) DUF3913 PF13052.6 gi|449066623|ref|YP_007433705.1| - 0.14 12.4 0.2 0.33 11.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3913) Ribosomal_L3 PF00297.22 gi|449066624|ref|YP_007433706.1| - 1.5e-73 247.9 0.0 1.8e-73 247.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 XhlA PF10779.9 gi|449066624|ref|YP_007433706.1| - 0.084 13.1 0.2 0.18 12.0 0.2 1.5 1 0 0 1 1 1 0 Haemolysin XhlA Methyltrn_RNA_3 PF02598.17 gi|449066625|ref|YP_007433707.1| - 3.6e-23 82.5 0.1 6.5e-16 58.7 0.1 2.3 1 1 1 2 2 2 2 Putative RNA methyltransferase tRNA-synt_1 PF00133.22 gi|449066626|ref|YP_007433708.1| - 2.5e-183 610.6 1.3 3.5e-183 610.1 1.3 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|449066626|ref|YP_007433708.1| - 3.9e-28 98.3 2.5 9.1e-28 97.1 2.5 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|449066626|ref|YP_007433708.1| - 2.2e-18 66.2 9.7 1.7e-06 27.1 0.0 5.1 3 2 1 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|449066626|ref|YP_007433708.1| - 0.00014 21.4 0.0 0.0017 17.9 0.0 2.6 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|449066626|ref|YP_007433708.1| - 0.00024 20.1 0.0 0.00067 18.7 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (K) NID PF07292.13 gi|449066626|ref|YP_007433708.1| - 0.0009 19.8 0.6 0.0029 18.2 0.6 1.9 1 0 0 1 1 1 1 Nmi/IFP 35 domain (NID) PDZ_4 PF17816.1 gi|449066626|ref|YP_007433708.1| - 0.005 17.2 1.7 0.061 13.7 0.1 3.1 2 1 1 3 3 3 1 PDZ domain Rpr2 PF04032.16 gi|449066626|ref|YP_007433708.1| - 0.014 15.6 1.2 0.076 13.3 0.1 2.6 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Iso_dh PF00180.20 gi|449066627|ref|YP_007433709.1| - 2.2e-91 306.6 0.5 2.6e-91 306.4 0.5 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|449066627|ref|YP_007433709.1| - 0.015 14.7 0.1 0.038 13.4 0.0 1.6 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthetic protein PdxA DUF447 PF04289.12 gi|449066628|ref|YP_007433710.1| - 2.9e-42 144.4 0.0 3.6e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) HAD_2 PF13419.6 gi|449066629|ref|YP_007433711.1| - 1.8e-24 86.8 0.1 5.9e-24 85.1 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449066629|ref|YP_007433711.1| - 2.9e-12 47.3 0.0 1.1e-11 45.5 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|449066629|ref|YP_007433711.1| - 8.5e-10 38.6 0.0 1.5e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|449066629|ref|YP_007433711.1| - 0.00028 21.3 0.0 0.00054 20.4 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Exo_endo_phos PF03372.23 gi|449066629|ref|YP_007433711.1| - 0.028 13.9 0.0 0.032 13.8 0.0 1.1 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family Hydrolase_6 PF13344.6 gi|449066629|ref|YP_007433711.1| - 0.032 14.3 0.0 0.24 11.5 0.0 2.3 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase DUF4159 PF13709.6 gi|449066629|ref|YP_007433711.1| - 0.077 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) GTP_EFTU PF00009.27 gi|449066630|ref|YP_007433712.1| - 1.5e-62 210.6 0.1 2.4e-62 209.9 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|449066630|ref|YP_007433712.1| - 4.9e-29 100.6 0.1 4.6e-28 97.4 0.0 2.6 2 1 1 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|449066630|ref|YP_007433712.1| - 2.9e-21 75.3 0.1 7.6e-21 74.0 0.1 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|449066630|ref|YP_007433712.1| - 3.3e-21 75.1 0.0 1e-20 73.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|449066630|ref|YP_007433712.1| - 1.1e-11 44.9 0.0 5e-11 42.8 0.0 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|449066630|ref|YP_007433712.1| - 0.00019 21.5 0.2 0.00048 20.2 0.2 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|449066630|ref|YP_007433712.1| - 0.04 13.7 0.0 0.085 12.7 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain CdiA_C PF18451.1 gi|449066630|ref|YP_007433712.1| - 0.083 13.1 3.3 0.2 11.9 3.3 1.7 1 0 0 1 1 1 0 Contact-dependent growth inhibition CdiA C-terminal domain ERCC4 PF02732.15 gi|449066631|ref|YP_007433713.1| - 2.8e-23 82.8 0.3 5.3e-23 81.9 0.3 1.5 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|449066631|ref|YP_007433713.1| - 9.8e-07 28.8 0.0 3.1e-06 27.2 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|449066631|ref|YP_007433713.1| - 1.4e-06 28.8 0.1 1e-05 26.1 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|449066631|ref|YP_007433713.1| - 0.00013 22.5 0.4 0.00031 21.3 0.1 1.7 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold z-alpha PF02295.17 gi|449066631|ref|YP_007433713.1| - 0.049 13.7 1.1 40 4.4 0.0 3.9 3 1 1 4 4 4 0 Adenosine deaminase z-alpha domain DUF5039 PF16442.5 gi|449066631|ref|YP_007433713.1| - 0.29 10.7 5.5 1.7 8.2 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF5039) Prefoldin_2 PF01920.20 gi|449066632|ref|YP_007433714.1| - 2.4e-23 82.1 17.7 2.7e-23 81.9 17.7 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF424 PF04242.13 gi|449066632|ref|YP_007433714.1| - 0.0088 16.3 0.2 0.022 15.0 0.2 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF424) DUF87 PF01935.17 gi|449066632|ref|YP_007433714.1| - 0.18 11.9 3.9 0.23 11.6 3.9 1.0 1 0 0 1 1 1 0 Helicase HerA, central domain DUF3837 PF12939.7 gi|449066632|ref|YP_007433714.1| - 0.22 11.9 4.7 2.3 8.7 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3837) RseA_C PF03873.13 gi|449066632|ref|YP_007433714.1| - 0.27 11.5 5.6 0.22 11.8 1.4 2.2 2 0 0 2 2 2 0 Anti sigma-E protein RseA, C-terminal domain TPR_MLP1_2 PF07926.12 gi|449066632|ref|YP_007433714.1| - 0.35 10.9 12.6 0.85 9.7 3.9 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|449066632|ref|YP_007433714.1| - 0.43 11.2 9.6 0.11 13.1 2.6 2.2 2 0 0 2 2 2 0 SlyX CDC37_C PF08564.10 gi|449066632|ref|YP_007433714.1| - 0.7 10.1 8.0 2.5 8.3 3.2 2.5 1 1 1 2 2 2 0 Cdc37 C terminal domain Prefoldin PF02996.17 gi|449066632|ref|YP_007433714.1| - 0.91 9.5 12.9 1.9e+02 2.0 12.9 2.4 1 1 0 1 1 1 0 Prefoldin subunit APG6_N PF17675.1 gi|449066632|ref|YP_007433714.1| - 1.1 9.8 12.2 0.57 10.7 1.5 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region U1snRNP70_N PF12220.8 gi|449066632|ref|YP_007433714.1| - 1.5 9.5 6.5 2.7 8.7 6.5 1.5 1 1 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal CENP-F_leu_zip PF10473.9 gi|449066632|ref|YP_007433714.1| - 3.6 7.6 17.9 0.59 10.2 2.9 2.3 1 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DASH_Dad4 PF08650.10 gi|449066633|ref|YP_007433715.1| - 0.058 13.4 0.2 0.12 12.4 0.1 1.5 1 1 1 2 2 2 0 DASH complex subunit Dad4 Brix PF04427.18 gi|449066634|ref|YP_007433716.1| - 0.026 14.6 0.0 0.048 13.8 0.0 1.5 1 1 1 2 2 2 0 Brix domain Ribosomal_L37ae PF01780.19 gi|449066635|ref|YP_007433717.1| - 7.8e-24 83.6 7.2 8.2e-24 83.5 7.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|449066635|ref|YP_007433717.1| - 0.00062 19.7 6.2 0.00062 19.7 4.9 1.6 1 1 1 2 2 2 1 Transposase zinc-ribbon domain Rep_fac-A_C PF08646.10 gi|449066635|ref|YP_007433717.1| - 0.0064 16.2 1.4 0.0075 16.0 1.4 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain DnaJ_CXXCXGXG PF00684.19 gi|449066635|ref|YP_007433717.1| - 0.0097 16.3 0.8 0.013 15.9 0.8 1.2 1 0 0 1 1 1 1 DnaJ central domain TF_Zn_Ribbon PF08271.12 gi|449066635|ref|YP_007433717.1| - 0.024 14.1 0.1 0.036 13.6 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|449066635|ref|YP_007433717.1| - 0.032 13.6 0.5 0.052 12.9 0.5 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-RRPl_C4 PF17026.5 gi|449066635|ref|YP_007433717.1| - 0.034 14.2 0.3 0.048 13.8 0.3 1.2 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type OrfB_Zn_ribbon PF07282.11 gi|449066635|ref|YP_007433717.1| - 0.061 13.2 1.3 0.077 12.9 1.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF4379 PF14311.6 gi|449066635|ref|YP_007433717.1| - 0.07 13.5 7.6 1.8 9.0 0.7 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|449066635|ref|YP_007433717.1| - 0.26 11.1 2.4 2.3 8.0 2.8 2.0 1 1 1 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.21 gi|449066636|ref|YP_007433718.1| - 3.1e-31 108.6 0.0 4.9e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|449066636|ref|YP_007433718.1| - 2.6e-09 37.0 0.1 1.2e-08 34.8 0.0 2.1 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 DUF1189 PF06691.11 gi|449066636|ref|YP_007433718.1| - 0.024 14.2 0.9 0.031 13.9 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) Fimbrial_K88 PF02432.15 gi|449066636|ref|YP_007433718.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Fimbrial, major and minor subunit RNase_PH PF01138.21 gi|449066637|ref|YP_007433719.1| - 7.9e-37 126.7 0.0 1.2e-36 126.1 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|449066637|ref|YP_007433719.1| - 4.2e-13 49.1 0.0 8e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|449066638|ref|YP_007433720.1| - 3.7e-06 27.2 0.1 7.8e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|449066638|ref|YP_007433720.1| - 0.00016 21.4 0.6 0.00037 20.3 0.6 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|449066638|ref|YP_007433720.1| - 0.0015 18.9 0.0 0.0031 17.8 0.0 1.6 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 gi|449066638|ref|YP_007433720.1| - 0.027 14.3 0.1 0.059 13.2 0.1 1.6 1 0 0 1 1 1 0 KH domain SBDS PF01172.18 gi|449066639|ref|YP_007433721.1| - 9e-23 80.2 0.1 1.7e-22 79.3 0.1 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|449066639|ref|YP_007433721.1| - 1.5e-21 76.6 0.4 2.3e-21 76.0 0.4 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|449066639|ref|YP_007433721.1| - 0.07 13.2 0.0 0.29 11.2 0.0 1.9 2 0 0 2 2 2 0 Elongation factor G C-terminus Proteasome PF00227.26 gi|449066640|ref|YP_007433722.1| - 2.1e-59 200.2 0.0 3.2e-59 199.6 0.0 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|449066640|ref|YP_007433722.1| - 3.9e-13 48.8 1.5 8.6e-13 47.7 0.5 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|449066641|ref|YP_007433723.1| - 3.5e-10 40.0 0.0 5.3e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.16 gi|449066642|ref|YP_007433724.1| - 0.0017 17.8 0.8 0.055 12.9 0.8 2.1 1 1 0 1 1 1 1 RNase P subunit p30 Como_SCP PF02248.16 gi|449066642|ref|YP_007433724.1| - 0.037 13.6 0.1 0.052 13.1 0.1 1.3 1 0 0 1 1 1 0 Small coat protein RNA_binding PF01877.17 gi|449066643|ref|YP_007433725.1| - 1.6e-28 99.3 1.6 2.1e-28 99.0 1.6 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|449066644|ref|YP_007433726.1| - 1.3e-73 246.8 8.8 1.3e-73 246.8 8.8 1.5 1 1 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.10 gi|449066645|ref|YP_007433727.1| - 7.9e-36 123.0 1.6 1.2e-35 122.4 0.4 1.9 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|449066645|ref|YP_007433727.1| - 2.3e-21 76.0 1.6 2.1e-20 72.9 0.0 2.9 3 1 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|449066645|ref|YP_007433727.1| - 5.8e-12 45.5 0.1 1.3e-11 44.4 0.1 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|449066645|ref|YP_007433727.1| - 1.5e-07 31.1 0.1 0.00015 21.4 0.1 3.1 3 0 0 3 3 3 2 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|449066645|ref|YP_007433727.1| - 0.011 16.0 0.1 0.33 11.2 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) MMR_HSR1_Xtn PF16897.5 gi|449066645|ref|YP_007433727.1| - 0.011 15.7 0.4 0.079 13.0 0.3 2.4 1 1 1 2 2 2 0 C-terminal region of MMR_HSR1 domain NTP_transferase PF00483.23 gi|449066646|ref|YP_007433728.1| - 1.8e-37 129.2 0.0 2.4e-37 128.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|449066646|ref|YP_007433728.1| - 1.5e-26 91.1 12.1 8.1e-08 31.7 0.0 4.7 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|449066646|ref|YP_007433728.1| - 4.2e-14 53.2 0.0 5.7e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|449066646|ref|YP_007433728.1| - 5.5e-07 29.2 10.5 0.0063 16.2 1.1 4.1 4 1 1 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|449066646|ref|YP_007433728.1| - 7.1e-07 29.2 0.0 1.4e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|449066646|ref|YP_007433728.1| - 0.03 14.2 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DUF4954 PF16314.5 gi|449066646|ref|YP_007433728.1| - 0.075 11.2 1.6 0.31 9.1 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) Ribosomal_S3Ae PF01015.18 gi|449066647|ref|YP_007433729.1| - 6.8e-67 225.0 1.5 7.7e-67 224.8 1.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF3234 PF11572.8 gi|449066647|ref|YP_007433729.1| - 0.052 13.7 0.0 3.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3234) SpoU_methylase PF00588.19 gi|449066648|ref|YP_007433730.1| - 6.5e-29 100.9 0.0 9.3e-29 100.4 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|449066648|ref|YP_007433730.1| - 0.00062 19.7 0.0 0.021 14.7 0.0 2.3 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase MTS PF05175.14 gi|449066649|ref|YP_007433731.1| - 1.9e-12 47.1 0.0 2.9e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|449066649|ref|YP_007433731.1| - 2.2e-12 47.0 0.1 2.9e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|449066649|ref|YP_007433731.1| - 1e-05 26.1 0.0 1.5e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|449066649|ref|YP_007433731.1| - 1.1e-05 25.3 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|449066649|ref|YP_007433731.1| - 9.9e-05 22.0 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|449066649|ref|YP_007433731.1| - 0.0013 18.6 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF3419 PF11899.8 gi|449066649|ref|YP_007433731.1| - 0.0019 17.4 0.0 0.0028 16.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3419) PCMT PF01135.19 gi|449066649|ref|YP_007433731.1| - 0.0021 17.9 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|449066649|ref|YP_007433731.1| - 0.0032 17.3 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|449066649|ref|YP_007433731.1| - 0.0066 15.8 0.0 0.0088 15.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase N6_Mtase PF02384.16 gi|449066649|ref|YP_007433731.1| - 0.0067 15.7 0.0 0.041 13.1 0.0 1.9 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_18 PF12847.7 gi|449066649|ref|YP_007433731.1| - 0.007 16.3 0.0 0.026 14.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|449066649|ref|YP_007433731.1| - 0.009 16.6 0.0 0.015 16.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|449066649|ref|YP_007433731.1| - 0.015 15.4 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|449066649|ref|YP_007433731.1| - 0.025 13.7 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|449066649|ref|YP_007433731.1| - 0.027 14.4 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|449066649|ref|YP_007433731.1| - 0.061 12.9 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|449066649|ref|YP_007433731.1| - 0.062 14.1 0.0 0.098 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|449066649|ref|YP_007433731.1| - 0.1 12.3 0.0 0.3 10.7 0.0 1.7 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_3 PF01596.17 gi|449066649|ref|YP_007433731.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase DOT1 PF08123.13 gi|449066649|ref|YP_007433731.1| - 0.12 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 RrnaAD PF00398.20 gi|449066650|ref|YP_007433732.1| - 2e-20 73.0 0.8 7.1e-20 71.2 0.8 1.7 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase DUF655 PF04919.12 gi|449066651|ref|YP_007433733.1| - 1.8e-58 197.4 3.4 2.2e-58 197.2 3.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|449066651|ref|YP_007433733.1| - 0.051 13.8 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|449066652|ref|YP_007433734.1| - 4.9e-07 30.1 1.4 5.7e-07 29.9 1.4 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF1160 PF06648.11 gi|449066652|ref|YP_007433734.1| - 0.0066 16.4 1.3 0.031 14.3 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1160) HTH_40 PF14493.6 gi|449066652|ref|YP_007433734.1| - 0.013 15.9 2.0 0.21 12.1 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MICSWaP PF17018.5 gi|449066652|ref|YP_007433734.1| - 0.023 14.3 1.2 0.028 14.0 1.2 1.1 1 0 0 1 1 1 0 Spore wall protein RIH_assoc PF08454.11 gi|449066652|ref|YP_007433734.1| - 0.026 14.4 0.1 0.09 12.6 0.1 1.8 1 1 0 1 1 1 0 RyR and IP3R Homology associated DUF2209 PF09974.9 gi|449066652|ref|YP_007433734.1| - 0.091 13.1 1.3 0.26 11.6 0.6 1.9 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2209) HTH_36 PF13730.6 gi|449066652|ref|YP_007433734.1| - 0.092 12.7 1.5 2.2 8.3 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain Arch_fla_DE PF04659.13 gi|449066652|ref|YP_007433734.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Archaeal flagella protein HTH_15 PF12324.8 gi|449066652|ref|YP_007433734.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Ribosomal_L21e PF01157.18 gi|449066653|ref|YP_007433735.1| - 2.6e-35 120.3 2.4 2.9e-35 120.2 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e SSV1_ORF_D-335 PF07935.11 gi|449066654|ref|YP_007433736.1| - 2.6e-21 75.7 0.9 3.1e-21 75.4 0.9 1.1 1 0 0 1 1 1 1 ORF D-335-like protein DUF5603 PF18231.1 gi|449066655|ref|YP_007433737.1| - 8.5 6.7 7.8 1.9 8.9 0.1 3.2 4 1 0 4 4 4 0 Domain of unknown function (DUF5603) CppA_N PF14506.6 gi|449066656|ref|YP_007433738.1| - 0.12 12.4 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 CppA N-terminal Replicase PF03090.17 gi|449066657|ref|YP_007433739.1| - 0.001 18.9 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Replicase family EntA_Immun PF08951.10 gi|449066657|ref|YP_007433739.1| - 0.033 14.6 0.3 0.59 10.5 0.0 2.4 2 0 0 2 2 2 0 Enterocin A Immunity RepB_primase PF16793.5 gi|449066657|ref|YP_007433739.1| - 0.041 14.0 0.0 0.053 13.7 0.0 1.1 1 0 0 1 1 1 0 RepB DNA-primase from phage plasmid DOPA_dioxygen PF08883.11 gi|449066657|ref|YP_007433739.1| - 0.07 13.3 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 Dopa 4,5-dioxygenase family Sec3_C PF09763.9 gi|449066657|ref|YP_007433739.1| - 0.17 10.2 0.5 4.9 5.4 0.3 2.0 2 0 0 2 2 2 0 Exocyst complex component Sec3 LmjF365940-deam PF14421.6 gi|449066658|ref|YP_007433740.1| - 0.0068 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 A distinct subfamily of CDD/CDA-like deaminases Resolvase PF00239.21 gi|449066660|ref|YP_007433742.1| - 2.4e-39 134.8 0.1 3e-39 134.4 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain STAR_dimer PF16544.5 gi|449066661|ref|YP_007433743.1| - 0.0038 16.8 0.3 0.0063 16.1 0.3 1.4 1 0 0 1 1 1 1 Homodimerisation region of STAR domain protein HTH_23 PF13384.6 gi|449066661|ref|YP_007433743.1| - 0.0086 15.8 0.0 0.054 13.3 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Mga PF05043.13 gi|449066661|ref|YP_007433743.1| - 0.012 16.2 0.1 0.69 10.5 0.0 2.1 2 0 0 2 2 2 0 Mga helix-turn-helix domain Sigma70_r4 PF04545.16 gi|449066661|ref|YP_007433743.1| - 0.013 15.0 0.0 0.029 13.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|449066661|ref|YP_007433743.1| - 0.021 14.9 0.4 0.16 12.0 0.0 2.4 2 1 1 3 3 3 0 HTH domain HTH_7 PF02796.15 gi|449066661|ref|YP_007433743.1| - 0.032 14.3 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|449066661|ref|YP_007433743.1| - 0.062 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|449066661|ref|YP_007433743.1| - 0.07 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|449066661|ref|YP_007433743.1| - 0.071 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix DUF2089 PF09862.9 gi|449066661|ref|YP_007433743.1| - 0.074 13.1 0.1 0.95 9.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) HTH_8 PF02954.19 gi|449066661|ref|YP_007433743.1| - 0.087 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_38 PF13936.6 gi|449066661|ref|YP_007433743.1| - 0.1 12.3 0.0 0.47 10.3 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4455 PF14643.6 gi|449066662|ref|YP_007433744.1| - 0.06 12.0 0.2 0.067 11.8 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) Phage_integrase PF00589.22 gi|449066663|ref|YP_007433745.1| - 2.3e-13 50.3 0.0 1.9e-12 47.3 0.0 2.4 2 1 0 2 2 2 1 Phage integrase family Phage_integr_3 PF16795.5 gi|449066663|ref|YP_007433745.1| - 1.4e-06 28.3 2.1 0.00069 19.6 0.1 2.7 2 0 0 2 2 2 2 Archaeal phage integrase Docking PF08990.11 gi|449066663|ref|YP_007433745.1| - 0.067 12.8 1.2 0.32 10.7 0.1 2.5 2 0 0 2 2 2 0 Erythronolide synthase docking Radical_SAM PF04055.21 gi|449066663|ref|YP_007433745.1| - 0.095 13.1 2.1 5.5 7.4 2.1 2.9 1 1 0 1 1 1 0 Radical SAM superfamily DUF3921 PF13060.6 gi|449066663|ref|YP_007433745.1| - 0.13 12.3 0.0 0.4 10.7 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) TetR_C_8 PF14278.6 gi|449066663|ref|YP_007433745.1| - 0.18 11.9 1.3 0.61 10.2 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator C-terminal region Beta-Casp PF10996.8 gi|449066664|ref|YP_007433746.1| - 1.9e-23 82.8 0.0 4e-23 81.8 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|449066664|ref|YP_007433746.1| - 2.3e-20 72.3 9.6 9.7e-18 63.9 1.1 3.2 2 1 1 3 3 3 2 KH domain RMMBL PF07521.12 gi|449066664|ref|YP_007433746.1| - 9.8e-17 60.7 0.1 2.2e-15 56.3 0.0 2.5 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|449066664|ref|YP_007433746.1| - 7.6e-14 52.2 0.5 9.5e-13 48.6 0.5 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|449066664|ref|YP_007433746.1| - 2.2e-13 50.1 0.0 7.8e-13 48.3 0.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|449066664|ref|YP_007433746.1| - 4.9e-11 42.5 0.2 9.5e-11 41.6 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|449066664|ref|YP_007433746.1| - 3.3e-05 23.8 0.3 0.00019 21.4 0.0 2.3 2 1 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|449066664|ref|YP_007433746.1| - 0.0034 17.2 8.9 0.039 13.8 1.8 2.9 1 1 1 2 2 2 1 KH domain A-2_8-polyST PF07388.11 gi|449066664|ref|YP_007433746.1| - 0.013 14.2 0.8 0.036 12.7 1.2 1.5 2 0 0 2 2 2 0 Alpha-2,8-polysialyltransferase (POLYST) KH_1 PF00013.29 gi|449066664|ref|YP_007433746.1| - 0.5 10.2 3.5 0.55 10.1 0.1 2.7 2 0 0 2 2 2 0 KH domain Fe-ADH_2 PF13685.6 gi|449066665|ref|YP_007433747.1| - 1.7e-62 211.4 0.0 2.1e-62 211.1 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|449066665|ref|YP_007433747.1| - 2.3e-25 89.2 0.1 7e-23 81.0 0.1 2.0 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|449066665|ref|YP_007433747.1| - 1e-10 41.2 0.1 1.2e-09 37.7 0.1 2.2 1 1 0 1 1 1 1 3-dehydroquinate synthase FKBP_C PF00254.28 gi|449066666|ref|YP_007433748.1| - 2.6e-15 56.5 0.7 8.8e-15 54.8 0.7 2.0 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|449066666|ref|YP_007433748.1| - 1.6e-07 31.3 1.4 3.9e-07 30.1 1.4 1.7 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_N_2 PF18023.1 gi|449066666|ref|YP_007433748.1| - 0.078 13.1 0.7 2 8.5 0.1 2.3 2 0 0 2 2 2 0 BDBT FKBP like N-terminal Ribosomal_L37e PF01907.19 gi|449066667|ref|YP_007433749.1| - 4.3e-25 87.6 9.7 4.7e-25 87.5 9.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e Ephrin_rec_like PF07699.13 gi|449066667|ref|YP_007433749.1| - 0.0037 17.0 0.9 0.0045 16.7 0.9 1.3 1 0 0 1 1 1 1 Putative ephrin-receptor like HypA PF01155.19 gi|449066667|ref|YP_007433749.1| - 0.011 15.7 0.3 0.012 15.7 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|449066667|ref|YP_007433749.1| - 0.029 14.4 1.8 0.035 14.1 1.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon Spermine_synth PF01564.17 gi|449066668|ref|YP_007433750.1| - 5.8e-44 149.7 0.0 8.3e-44 149.2 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|449066668|ref|YP_007433750.1| - 3e-10 39.8 0.0 6e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|449066668|ref|YP_007433750.1| - 1.9e-05 25.3 0.0 4.1e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|449066668|ref|YP_007433750.1| - 0.00035 20.5 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|449066668|ref|YP_007433750.1| - 0.00055 19.5 0.0 0.00084 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|449066668|ref|YP_007433750.1| - 0.0016 18.2 0.0 0.0025 17.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|449066668|ref|YP_007433750.1| - 0.0043 17.8 0.0 0.0077 17.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|449066668|ref|YP_007433750.1| - 0.012 14.9 0.0 0.027 13.7 0.0 1.5 1 1 0 1 1 1 0 O-methyltransferase domain Methyltransf_11 PF08241.12 gi|449066668|ref|YP_007433750.1| - 0.014 16.0 0.0 0.028 15.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|449066668|ref|YP_007433750.1| - 0.16 11.6 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 AdoHcyase PF05221.17 gi|449066669|ref|YP_007433751.1| - 3.7e-76 256.2 0.0 1.1e-44 152.9 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|449066669|ref|YP_007433751.1| - 1.2e-54 184.7 1.1 2.4e-54 183.8 1.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|449066669|ref|YP_007433751.1| - 3.4e-08 33.1 0.2 7.3e-08 32.0 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|449066669|ref|YP_007433751.1| - 1.1e-05 25.1 0.1 2.1e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain THF_DHG_CYH_C PF02882.19 gi|449066669|ref|YP_007433751.1| - 0.00041 19.7 0.3 0.0031 16.8 0.3 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.18 gi|449066669|ref|YP_007433751.1| - 0.001 19.3 0.0 0.0025 18.0 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|449066669|ref|YP_007433751.1| - 0.016 15.1 0.3 0.036 14.0 0.3 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|449066669|ref|YP_007433751.1| - 0.032 14.8 0.2 0.15 12.7 0.2 2.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|449066669|ref|YP_007433751.1| - 0.048 14.2 0.1 0.12 13.0 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|449066669|ref|YP_007433751.1| - 0.054 12.8 1.6 0.79 9.0 1.6 2.3 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|449066669|ref|YP_007433751.1| - 0.15 12.5 0.1 0.34 11.4 0.1 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding MS_channel PF00924.18 gi|449066670|ref|YP_007433752.1| - 6.2e-17 61.8 9.9 6.2e-17 61.8 9.9 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel FtsK_4TM PF13491.6 gi|449066670|ref|YP_007433752.1| - 0.4 10.4 11.0 0.065 12.9 5.7 2.0 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE DUF2122 PF09895.9 gi|449066671|ref|YP_007433753.1| - 5.4e-33 113.6 0.1 7.1e-33 113.2 0.1 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) TIR_3 PF18567.1 gi|449066671|ref|YP_007433753.1| - 0.018 15.0 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Toll/interleukin-1 receptor domain Fe-S_biosyn PF01521.20 gi|449066671|ref|YP_007433753.1| - 0.083 13.1 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Iron-sulphur cluster biosynthesis DNA_methylase PF00145.17 gi|449066672|ref|YP_007433754.1| - 1.3e-51 176.0 0.0 1.5e-37 129.7 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|449066672|ref|YP_007433754.1| - 0.013 15.1 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TFIIE_alpha PF02002.17 gi|449066673|ref|YP_007433755.1| - 3.4e-20 71.9 6.0 3.4e-20 71.9 6.0 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|449066673|ref|YP_007433755.1| - 0.0004 20.7 0.0 0.00062 20.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|449066673|ref|YP_007433755.1| - 0.0019 18.4 0.1 0.0035 17.5 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r3 PF04539.16 gi|449066673|ref|YP_007433755.1| - 0.0024 17.9 3.5 0.0025 17.9 0.0 2.4 3 0 0 3 3 3 1 Sigma-70 region 3 HTH_9 PF08221.11 gi|449066673|ref|YP_007433755.1| - 0.011 15.9 0.0 0.031 14.4 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.7 gi|449066673|ref|YP_007433755.1| - 0.014 15.5 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|449066673|ref|YP_007433755.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|449066673|ref|YP_007433755.1| - 0.02 14.8 0.3 0.069 13.1 0.1 2.0 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.19 gi|449066673|ref|YP_007433755.1| - 0.032 14.1 1.2 0.04 13.8 0.2 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|449066673|ref|YP_007433755.1| - 0.035 14.1 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain CemA PF03040.14 gi|449066673|ref|YP_007433755.1| - 0.047 13.6 1.4 2.1 8.2 0.0 2.1 2 0 0 2 2 2 0 CemA family DUF2316 PF10078.9 gi|449066673|ref|YP_007433755.1| - 0.048 13.9 0.1 0.21 11.8 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) HrcA_DNA-bdg PF03444.15 gi|449066673|ref|YP_007433755.1| - 0.093 12.4 0.2 0.68 9.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Trm56 PF01994.16 gi|449066674|ref|YP_007433756.1| - 7.8e-48 161.3 0.1 8.8e-48 161.1 0.1 1.0 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 MMR_HSR1 PF01926.23 gi|449066675|ref|YP_007433757.1| - 2.1e-19 69.7 0.7 4.3e-19 68.7 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|449066675|ref|YP_007433757.1| - 4.6e-17 62.4 1.8 7.8e-17 61.7 1.8 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|449066675|ref|YP_007433757.1| - 1.9e-10 41.3 0.4 4e-10 40.2 0.4 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|449066675|ref|YP_007433757.1| - 3e-10 39.8 0.4 8.6e-10 38.4 0.4 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|449066675|ref|YP_007433757.1| - 5e-07 29.4 0.6 0.00028 20.5 0.6 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|449066675|ref|YP_007433757.1| - 2e-06 27.4 0.3 4.7e-06 26.1 0.1 1.7 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|449066675|ref|YP_007433757.1| - 2.2e-06 27.7 3.0 0.035 14.0 0.1 2.8 3 0 0 3 3 3 2 RsgA GTPase ABC_tran PF00005.27 gi|449066675|ref|YP_007433757.1| - 0.00095 19.7 0.4 0.0024 18.4 0.2 1.8 1 1 1 2 2 2 1 ABC transporter MMR_HSR1_Xtn PF16897.5 gi|449066675|ref|YP_007433757.1| - 0.0017 18.3 0.3 0.0069 16.4 0.3 2.1 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 gi|449066675|ref|YP_007433757.1| - 0.002 17.6 3.0 0.013 14.9 2.6 2.4 1 1 0 1 1 1 1 ADP-ribosylation factor family Spore_IV_A PF09547.10 gi|449066675|ref|YP_007433757.1| - 0.004 16.1 1.4 0.1 11.5 0.1 2.5 2 1 1 3 3 3 1 Stage IV sporulation protein A (spore_IV_A) Dynamin_N PF00350.23 gi|449066675|ref|YP_007433757.1| - 0.0089 16.1 0.2 0.2 11.7 0.1 2.6 1 1 1 2 2 2 1 Dynamin family AAA_23 PF13476.6 gi|449066675|ref|YP_007433757.1| - 0.011 16.2 4.5 0.011 16.2 4.5 2.2 1 1 1 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|449066675|ref|YP_007433757.1| - 0.024 14.4 1.8 0.38 10.5 0.2 2.3 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|449066675|ref|YP_007433757.1| - 0.044 13.5 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TniB PF05621.11 gi|449066675|ref|YP_007433757.1| - 0.051 13.0 0.9 0.55 9.6 0.1 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_21 PF13304.6 gi|449066675|ref|YP_007433757.1| - 0.053 13.3 1.1 0.072 12.9 0.2 1.7 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system cobW PF02492.19 gi|449066675|ref|YP_007433757.1| - 0.08 12.5 4.6 1.1 8.8 0.3 2.7 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTP_transf_2 PF01909.23 gi|449066675|ref|YP_007433757.1| - 0.11 12.9 3.5 1 9.7 1.6 2.9 2 1 0 2 2 2 0 Nucleotidyltransferase domain PduV-EutP PF10662.9 gi|449066675|ref|YP_007433757.1| - 0.27 11.0 2.2 2 8.1 0.4 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation HTH_3 PF01381.22 gi|449066676|ref|YP_007433758.1| - 2.4e-11 43.5 2.9 4.4e-11 42.7 2.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|449066676|ref|YP_007433758.1| - 2.9e-08 33.9 0.0 4.5e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|449066676|ref|YP_007433758.1| - 2.1e-07 30.7 1.3 1.1e-05 25.2 0.8 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|449066676|ref|YP_007433758.1| - 6.6e-07 29.3 1.6 6.6e-07 29.3 1.6 2.8 2 1 1 3 3 3 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|449066676|ref|YP_007433758.1| - 0.00073 19.6 3.8 0.0028 17.8 3.7 1.8 1 1 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_37 PF13744.6 gi|449066676|ref|YP_007433758.1| - 0.0066 16.4 1.0 0.013 15.4 1.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.6 gi|449066676|ref|YP_007433758.1| - 0.015 15.2 5.0 0.042 13.8 5.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) DZR PF12773.7 gi|449066676|ref|YP_007433758.1| - 0.016 15.2 0.2 0.031 14.3 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|449066676|ref|YP_007433758.1| - 0.031 14.0 2.5 0.97 9.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HTH_6 PF01418.17 gi|449066676|ref|YP_007433758.1| - 0.054 13.5 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_23 PF13384.6 gi|449066676|ref|YP_007433758.1| - 0.062 13.1 0.3 0.19 11.6 0.3 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|449066676|ref|YP_007433758.1| - 0.1 12.0 0.0 0.42 10.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Pou PF00157.17 gi|449066676|ref|YP_007433758.1| - 0.11 12.5 0.7 0.64 10.0 0.8 2.2 2 1 0 2 2 2 0 Pou domain - N-terminal to homeobox domain IF-2B PF01008.17 gi|449066676|ref|YP_007433758.1| - 0.12 11.5 1.6 0.16 11.1 1.6 1.1 1 0 0 1 1 1 0 Initiation factor 2 subunit family Relaxase PF03432.14 gi|449066676|ref|YP_007433758.1| - 0.17 11.5 3.9 0.23 11.1 3.9 1.1 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain GRDP-like PF07173.12 gi|449066676|ref|YP_007433758.1| - 0.17 12.5 2.1 0.24 12.0 2.1 1.1 1 0 0 1 1 1 0 Glycine-rich domain-containing protein-like HTH_26 PF13443.6 gi|449066676|ref|YP_007433758.1| - 0.19 12.2 0.8 0.51 10.8 0.3 2.0 2 1 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain PIN_2 PF10130.9 gi|449066676|ref|YP_007433758.1| - 0.91 9.8 4.0 4.3 7.6 0.7 2.0 1 1 1 2 2 2 0 PIN domain RecR PF02132.15 gi|449066676|ref|YP_007433758.1| - 6.5 6.4 6.5 5.5 6.7 0.1 3.1 3 0 0 3 3 3 0 RecR protein AAA PF00004.29 gi|449066677|ref|YP_007433759.1| - 4.2e-43 146.9 0.1 1.4e-42 145.2 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|449066677|ref|YP_007433759.1| - 7.8e-15 54.4 0.1 2e-14 53.1 0.1 1.8 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|449066677|ref|YP_007433759.1| - 7.5e-10 38.6 0.2 1.8e-09 37.4 0.2 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|449066677|ref|YP_007433759.1| - 5.8e-07 29.8 0.0 1.5e-06 28.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|449066677|ref|YP_007433759.1| - 1.5e-06 28.7 0.1 0.00024 21.5 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|449066677|ref|YP_007433759.1| - 1.4e-05 25.1 0.2 7e-05 22.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|449066677|ref|YP_007433759.1| - 2.2e-05 24.3 0.0 5.6e-05 22.9 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Prot_ATP_OB_N PF17758.1 gi|449066677|ref|YP_007433759.1| - 2.4e-05 23.9 0.1 6.8e-05 22.4 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|449066677|ref|YP_007433759.1| - 4.3e-05 23.8 0.3 0.0033 17.7 0.0 2.8 1 1 2 3 3 2 1 AAA domain DUF815 PF05673.13 gi|449066677|ref|YP_007433759.1| - 0.00023 20.4 0.0 0.00042 19.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|449066677|ref|YP_007433759.1| - 0.0005 20.4 0.0 0.001 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|449066677|ref|YP_007433759.1| - 0.0011 18.4 0.6 0.0038 16.7 0.2 2.0 2 1 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|449066677|ref|YP_007433759.1| - 0.0017 18.5 0.0 0.0057 16.8 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|449066677|ref|YP_007433759.1| - 0.0018 18.8 0.0 0.006 17.1 0.0 2.1 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|449066677|ref|YP_007433759.1| - 0.0018 18.0 0.0 0.0049 16.6 0.0 1.8 2 0 0 2 2 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|449066677|ref|YP_007433759.1| - 0.0021 17.3 0.0 0.0046 16.2 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|449066677|ref|YP_007433759.1| - 0.003 17.3 0.0 0.01 15.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 gi|449066677|ref|YP_007433759.1| - 0.0044 17.1 0.1 0.017 15.2 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|449066677|ref|YP_007433759.1| - 0.0068 15.9 0.0 0.016 14.7 0.0 1.7 1 1 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|449066677|ref|YP_007433759.1| - 0.0093 15.7 0.0 0.043 13.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|449066677|ref|YP_007433759.1| - 0.01 15.1 0.1 0.028 13.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.22 gi|449066677|ref|YP_007433759.1| - 0.015 15.7 0.0 0.035 14.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATPase PF06745.13 gi|449066677|ref|YP_007433759.1| - 0.02 14.2 0.3 0.042 13.2 0.0 1.7 2 0 0 2 2 1 0 KaiC NACHT PF05729.12 gi|449066677|ref|YP_007433759.1| - 0.024 14.5 0.1 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|449066677|ref|YP_007433759.1| - 0.03 13.8 0.0 0.087 12.3 0.0 1.8 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|449066677|ref|YP_007433759.1| - 0.037 13.6 0.3 0.11 12.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|449066677|ref|YP_007433759.1| - 0.043 13.8 0.0 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ThylakoidFormat PF11264.8 gi|449066677|ref|YP_007433759.1| - 0.049 13.3 0.7 0.15 11.7 0.3 1.9 2 0 0 2 2 2 0 Thylakoid formation protein Guanylate_kin PF00625.21 gi|449066677|ref|YP_007433759.1| - 0.05 13.3 0.2 1.8 8.2 0.0 2.9 2 1 0 3 3 3 0 Guanylate kinase Parvo_NS1 PF01057.17 gi|449066677|ref|YP_007433759.1| - 0.051 12.7 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DivIC PF04977.15 gi|449066677|ref|YP_007433759.1| - 0.051 13.3 1.0 0.19 11.5 0.3 2.2 2 0 0 2 2 2 0 Septum formation initiator cobW PF02492.19 gi|449066677|ref|YP_007433759.1| - 0.061 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|449066677|ref|YP_007433759.1| - 0.066 13.1 4.4 0.091 12.7 0.1 3.1 3 1 0 3 3 3 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|449066677|ref|YP_007433759.1| - 0.07 13.6 0.0 0.32 11.5 0.0 2.1 2 0 0 2 2 2 0 ABC transporter Prefoldin_2 PF01920.20 gi|449066677|ref|YP_007433759.1| - 0.079 12.9 1.3 0.25 11.3 1.3 1.8 1 0 0 1 1 1 0 Prefoldin subunit Tropomyosin_1 PF12718.7 gi|449066677|ref|YP_007433759.1| - 0.081 13.1 3.2 0.18 11.9 3.2 1.5 1 0 0 1 1 1 0 Tropomyosin like AAA_30 PF13604.6 gi|449066677|ref|YP_007433759.1| - 0.084 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|449066677|ref|YP_007433759.1| - 0.087 12.0 0.0 0.42 9.7 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain CCDC106 PF15794.5 gi|449066677|ref|YP_007433759.1| - 0.091 12.5 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 AFG1_ATPase PF03969.16 gi|449066677|ref|YP_007433759.1| - 0.1 11.5 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 AFG1-like ATPase CPT PF07931.12 gi|449066677|ref|YP_007433759.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_17 PF13207.6 gi|449066677|ref|YP_007433759.1| - 0.18 12.2 0.8 0.53 10.7 0.0 2.3 2 1 0 2 2 1 0 AAA domain AAA_11 PF13086.6 gi|449066677|ref|YP_007433759.1| - 0.19 11.5 0.9 0.57 9.9 0.0 2.2 3 0 0 3 3 2 0 AAA domain YvrJ PF12841.7 gi|449066677|ref|YP_007433759.1| - 0.19 11.3 1.9 0.72 9.4 1.1 2.4 2 0 0 2 2 2 0 YvrJ protein family bZIP_1 PF00170.21 gi|449066677|ref|YP_007433759.1| - 0.34 11.0 4.1 0.5 10.5 1.8 2.4 2 0 0 2 2 2 0 bZIP transcription factor AAA_23 PF13476.6 gi|449066677|ref|YP_007433759.1| - 7.6 7.0 9.3 3.5 8.1 0.4 3.0 2 1 0 2 2 2 0 AAA domain PUA PF01472.20 gi|449066678|ref|YP_007433760.1| - 1.9e-20 72.6 0.7 3e-20 72.0 0.7 1.3 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|449066678|ref|YP_007433760.1| - 3.2e-14 52.8 0.0 6.2e-14 51.9 0.0 1.5 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase UPF0113 PF03657.13 gi|449066678|ref|YP_007433760.1| - 0.00012 22.3 0.4 0.00025 21.3 0.2 1.6 2 0 0 2 2 2 1 UPF0113 PUA domain PAC2 PF09754.9 gi|449066679|ref|YP_007433761.1| - 8.8e-35 120.6 0.0 1e-34 120.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.18 gi|449066680|ref|YP_007433762.1| - 8.4e-66 222.5 0.0 1.1e-65 222.1 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Lsm_C PF14894.6 gi|449066681|ref|YP_007433763.1| - 4.2e-30 103.3 0.3 7.7e-30 102.5 0.3 1.4 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|449066681|ref|YP_007433763.1| - 0.00021 20.9 1.4 0.0013 18.4 1.0 2.3 2 1 0 2 2 2 1 LSM domain SM-ATX PF14438.6 gi|449066681|ref|YP_007433763.1| - 0.0017 18.4 0.2 0.0043 17.2 0.2 1.8 1 1 0 1 1 1 1 Ataxin 2 SM domain DUF4579 PF15158.6 gi|449066681|ref|YP_007433763.1| - 0.073 12.8 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4579) Phage_sheath_1N PF17481.2 gi|449066681|ref|YP_007433763.1| - 0.22 12.0 2.5 1.5 9.4 2.5 2.1 1 1 0 1 1 1 0 Phage tail sheath protein beta-sandwich domain LSM14 PF12701.7 gi|449066681|ref|YP_007433763.1| - 0.23 11.6 1.8 1.5 9.0 1.8 2.6 1 1 0 1 1 1 0 Scd6-like Sm domain RNA_pol_RpbG PF16992.5 gi|449066682|ref|YP_007433764.1| - 2.3e-49 166.4 3.9 2.6e-49 166.2 3.9 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RusA PF05866.11 gi|449066682|ref|YP_007433764.1| - 0.069 13.7 0.1 0.097 13.2 0.1 1.2 1 0 0 1 1 1 0 Endodeoxyribonuclease RusA Proteasome PF00227.26 gi|449066683|ref|YP_007433765.1| - 2.2e-50 170.8 0.2 2.6e-50 170.6 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit tRNA-synt_His PF13393.6 gi|449066684|ref|YP_007433766.1| - 2.2e-64 217.7 0.0 2.8e-64 217.4 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|449066684|ref|YP_007433766.1| - 5e-14 52.7 0.0 2.6e-13 50.3 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|449066684|ref|YP_007433766.1| - 1.1e-10 41.5 0.6 2.8e-10 40.2 0.6 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|449066684|ref|YP_007433766.1| - 5.8e-10 39.1 0.1 5.5e-08 32.6 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|449066684|ref|YP_007433766.1| - 3.5e-05 23.3 0.0 6.1e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA_int_endo PF01974.17 gi|449066685|ref|YP_007433767.1| - 6.6e-07 29.3 0.1 2.2e-06 27.6 0.1 1.8 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain sCache_like PF16736.5 gi|449066685|ref|YP_007433767.1| - 0.018 15.1 0.3 0.025 14.7 0.3 1.2 1 0 0 1 1 1 0 Single Cache-like Sen15 PF09631.10 gi|449066685|ref|YP_007433767.1| - 0.032 14.5 0.1 0.037 14.3 0.1 1.1 1 0 0 1 1 1 0 Sen15 protein TF_Zn_Ribbon PF08271.12 gi|449066686|ref|YP_007433768.1| - 3.4e-11 42.5 3.5 6.9e-11 41.5 3.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|449066686|ref|YP_007433768.1| - 0.023 14.4 1.1 0.044 13.5 0.8 1.6 2 0 0 2 2 2 0 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.6 gi|449066686|ref|YP_007433768.1| - 0.23 11.5 1.2 0.51 10.4 1.2 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1492 PF07374.11 gi|449066686|ref|YP_007433768.1| - 0.32 11.2 5.4 0.12 12.6 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1492) zf-ribbon_3 PF13248.6 gi|449066686|ref|YP_007433768.1| - 2 8.0 5.6 6.9 6.2 1.2 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Cpn60_TCP1 PF00118.24 gi|449066687|ref|YP_007433769.1| - 1.4e-175 584.6 16.6 1.7e-175 584.4 16.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BRCT_2 PF16589.5 gi|449066687|ref|YP_007433769.1| - 0.12 12.8 0.1 6.7 7.2 0.0 2.7 2 0 0 2 2 2 0 BRCT domain, a BRCA1 C-terminus domain DUF87 PF01935.17 gi|449066688|ref|YP_007433770.1| - 1.5e-36 126.6 1.1 1.5e-36 126.6 1.1 2.2 3 0 0 3 3 3 1 Helicase HerA, central domain DUF853 PF05872.12 gi|449066688|ref|YP_007433770.1| - 5.2e-08 31.9 0.0 0.00088 18.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|449066688|ref|YP_007433770.1| - 8.8e-08 31.4 0.1 3.8e-05 22.8 0.0 2.6 3 0 0 3 3 3 2 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|449066688|ref|YP_007433770.1| - 2.9e-07 29.6 0.6 0.00096 18.1 0.0 2.7 3 0 0 3 3 3 2 Type IV secretory system Conjugative DNA transfer Zot PF05707.12 gi|449066688|ref|YP_007433770.1| - 9.9e-06 25.3 0.0 4.5e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_10 PF12846.7 gi|449066688|ref|YP_007433770.1| - 5.5e-05 22.3 0.9 0.24 10.3 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain TraG-D_C PF12696.7 gi|449066688|ref|YP_007433770.1| - 0.0011 19.0 0.4 0.0041 17.1 0.1 2.0 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG AAA PF00004.29 gi|449066688|ref|YP_007433770.1| - 0.0016 18.9 0.7 2.4 8.6 0.2 3.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|449066688|ref|YP_007433770.1| - 0.0028 17.9 1.7 1.9 8.7 0.1 2.8 3 1 0 3 3 2 2 AAA domain DDE_1 PF03184.19 gi|449066688|ref|YP_007433770.1| - 0.021 14.5 0.5 0.043 13.5 0.5 1.5 1 0 0 1 1 1 0 DDE superfamily endonuclease AAA_16 PF13191.6 gi|449066688|ref|YP_007433770.1| - 0.039 14.4 0.6 2 8.8 0.4 3.1 3 1 0 3 3 2 0 AAA ATPase domain CbiA PF01656.23 gi|449066688|ref|YP_007433770.1| - 0.1 12.7 0.4 0.72 9.9 0.0 2.4 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain RuvB_N PF05496.12 gi|449066688|ref|YP_007433770.1| - 0.1 12.3 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain IPT PF01745.16 gi|449066688|ref|YP_007433770.1| - 0.11 11.9 0.0 0.32 10.3 0.0 1.7 1 0 0 1 1 1 0 Isopentenyl transferase Zeta_toxin PF06414.12 gi|449066688|ref|YP_007433770.1| - 0.14 11.4 0.0 0.31 10.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ResIII PF04851.15 gi|449066688|ref|YP_007433770.1| - 0.23 11.4 6.2 0.31 11.0 0.9 3.0 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Urm1 PF09138.11 gi|449066690|ref|YP_007433772.1| - 5.4e-06 26.7 0.3 6.2e-06 26.5 0.3 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.20 gi|449066690|ref|YP_007433772.1| - 8.8e-06 26.3 0.0 9.5e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 ThiS family DNA_pol3_beta PF00712.19 gi|449066690|ref|YP_007433772.1| - 0.054 13.6 0.0 0.058 13.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain Ribosomal_S17e PF00833.18 gi|449066691|ref|YP_007433773.1| - 1.1e-14 54.3 0.9 1.3e-14 54.2 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF3536 PF12055.8 gi|449066691|ref|YP_007433773.1| - 0.034 13.4 0.9 0.039 13.3 0.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3536) DUF2797 PF10977.8 gi|449066691|ref|YP_007433773.1| - 0.053 13.4 1.5 0.056 13.3 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) MinE PF03776.14 gi|449066691|ref|YP_007433773.1| - 0.081 12.9 1.4 0.22 11.6 0.5 1.9 1 1 1 2 2 2 0 Septum formation topological specificity factor MinE GP24_25 PF17388.2 gi|449066691|ref|YP_007433773.1| - 0.2 11.6 4.0 0.11 12.5 1.9 1.6 1 1 1 2 2 2 0 Tail assembly gene products 24 & 25 YtxH PF12732.7 gi|449066691|ref|YP_007433773.1| - 0.82 10.2 7.9 11 6.6 7.9 2.0 1 1 0 1 1 1 0 YtxH-like protein FBPase_3 PF01950.16 gi|449066692|ref|YP_007433774.1| - 2.5e-179 596.1 0.0 2.8e-179 595.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.27 gi|449066693|ref|YP_007433775.1| - 1.7e-37 129.0 0.0 4.7e-19 69.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|449066693|ref|YP_007433775.1| - 1.4e-16 61.2 9.7 0.0039 17.0 0.1 4.3 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|449066693|ref|YP_007433775.1| - 2e-12 46.7 2.3 4.7e-12 45.5 2.3 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|449066693|ref|YP_007433775.1| - 1.2e-10 41.2 6.4 0.002 17.6 2.9 4.2 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|449066693|ref|YP_007433775.1| - 3.9e-07 29.6 6.4 3.9e-07 29.6 6.4 2.6 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|449066693|ref|YP_007433775.1| - 8.4e-06 25.8 8.3 0.00024 21.1 1.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain MMR_HSR1 PF01926.23 gi|449066693|ref|YP_007433775.1| - 1e-05 25.6 0.5 0.24 11.5 0.0 3.1 2 1 0 2 2 2 2 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|449066693|ref|YP_007433775.1| - 1.9e-05 24.7 0.8 0.2 11.7 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|449066693|ref|YP_007433775.1| - 5.4e-05 23.8 2.5 0.13 12.7 0.3 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|449066693|ref|YP_007433775.1| - 8e-05 23.2 0.1 0.85 10.2 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|449066693|ref|YP_007433775.1| - 0.0001 22.7 0.0 0.019 15.4 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain Fer4_6 PF12837.7 gi|449066693|ref|YP_007433775.1| - 0.00044 20.2 12.9 0.0015 18.5 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.15 gi|449066693|ref|YP_007433775.1| - 0.00055 19.9 0.0 0.79 9.6 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain RNA_helicase PF00910.22 gi|449066693|ref|YP_007433775.1| - 0.00058 20.2 0.0 0.21 12.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase Fer4_2 PF12797.7 gi|449066693|ref|YP_007433775.1| - 0.00067 19.6 1.2 0.00067 19.6 1.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449066693|ref|YP_007433775.1| - 0.00077 19.6 8.3 0.0014 18.7 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066693|ref|YP_007433775.1| - 0.00089 19.8 0.7 0.00089 19.8 0.7 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|449066693|ref|YP_007433775.1| - 0.0011 18.8 10.3 0.45 10.2 0.1 3.9 3 1 0 4 4 4 2 AAA ATPase domain AAA_33 PF13671.6 gi|449066693|ref|YP_007433775.1| - 0.0013 18.9 0.0 0.57 10.3 0.0 2.9 2 1 0 2 2 2 1 AAA domain Fer4_9 PF13187.6 gi|449066693|ref|YP_007433775.1| - 0.0015 18.6 6.8 0.0028 17.8 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|449066693|ref|YP_007433775.1| - 0.0019 18.0 0.0 0.098 12.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain Fer4_16 PF13484.6 gi|449066693|ref|YP_007433775.1| - 0.0038 18.1 4.0 0.0086 17.0 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_29 PF13555.6 gi|449066693|ref|YP_007433775.1| - 0.0039 16.9 2.0 1.8 8.4 0.5 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.12 gi|449066693|ref|YP_007433775.1| - 0.0064 16.4 0.1 0.025 14.5 0.0 2.0 3 0 0 3 3 2 1 NACHT domain AAA_30 PF13604.6 gi|449066693|ref|YP_007433775.1| - 0.0094 15.7 0.0 0.11 12.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449066693|ref|YP_007433775.1| - 0.0095 16.2 0.3 0.17 12.2 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|449066693|ref|YP_007433775.1| - 0.011 16.1 0.0 0.37 11.2 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|449066693|ref|YP_007433775.1| - 0.013 15.7 0.0 5.7 7.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|449066693|ref|YP_007433775.1| - 0.019 14.7 0.0 3.7 7.3 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop PRK PF00485.18 gi|449066693|ref|YP_007433775.1| - 0.024 14.4 0.0 0.87 9.3 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|449066693|ref|YP_007433775.1| - 0.051 12.7 0.3 0.33 10.1 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|449066693|ref|YP_007433775.1| - 0.058 12.4 0.1 0.7 8.9 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.14 gi|449066693|ref|YP_007433775.1| - 0.059 13.3 0.6 0.82 9.6 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.6 gi|449066693|ref|YP_007433775.1| - 0.065 11.9 0.8 12 4.4 0.0 3.0 3 0 0 3 3 3 0 AAA domain Fer4_8 PF13183.6 gi|449066693|ref|YP_007433775.1| - 0.15 12.5 0.1 0.15 12.5 0.1 1.8 2 0 0 2 2 1 0 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|449066693|ref|YP_007433775.1| - 0.25 11.2 3.7 2.1 8.3 0.0 3.0 2 1 1 3 3 3 0 RsgA GTPase Fer4_4 PF12800.7 gi|449066693|ref|YP_007433775.1| - 0.27 11.8 10.9 0.16 12.6 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|449066693|ref|YP_007433775.1| - 1.3 9.6 6.4 0.27 11.8 1.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain ATPase_2 PF01637.18 gi|449066693|ref|YP_007433775.1| - 2.4 8.0 6.7 0.94 9.3 0.3 2.9 2 2 0 2 2 2 0 ATPase domain predominantly from Archaea Fer4_3 PF12798.7 gi|449066693|ref|YP_007433775.1| - 6 8.1 11.4 0.5 11.4 2.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain MFS_1 PF07690.16 gi|449066695|ref|YP_007433777.1| - 4.5e-26 91.6 72.0 5.7e-21 74.8 44.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449066695|ref|YP_007433777.1| - 6.4e-21 74.7 37.3 3.9e-16 59.0 12.0 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter Ribosomal_S10 PF00338.22 gi|449066699|ref|YP_007433781.1| - 8.1e-28 96.5 0.1 9.1e-28 96.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|449066700|ref|YP_007433782.1| - 6e-54 182.5 0.1 8e-54 182.1 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|449066700|ref|YP_007433782.1| - 4.6e-36 123.5 0.1 1.1e-35 122.3 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|449066700|ref|YP_007433782.1| - 1.2e-17 64.0 5.5 2.1e-16 60.1 3.5 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|449066700|ref|YP_007433782.1| - 4.2e-06 26.8 0.1 2.9e-05 24.1 0.0 2.4 1 1 1 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|449066700|ref|YP_007433782.1| - 0.00031 20.6 3.2 0.00031 20.6 3.2 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|449066700|ref|YP_007433782.1| - 0.0014 18.1 0.1 0.8 9.1 0.0 2.3 1 1 1 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|449066700|ref|YP_007433782.1| - 0.004 16.5 0.1 0.018 14.4 0.1 1.9 1 1 0 1 1 1 1 Septin Gtr1_RagA PF04670.12 gi|449066700|ref|YP_007433782.1| - 0.017 14.5 0.1 0.027 13.8 0.1 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region cobW PF02492.19 gi|449066700|ref|YP_007433782.1| - 0.057 13.0 0.3 0.39 10.3 0.1 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SepF PF04472.12 gi|449066700|ref|YP_007433782.1| - 0.063 13.6 1.7 5.1 7.5 0.1 3.2 4 0 0 4 4 4 0 Cell division protein SepF Dynamin_N PF00350.23 gi|449066700|ref|YP_007433782.1| - 0.08 13.0 0.0 2.3 8.3 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ribosomal_S7 PF00177.21 gi|449066701|ref|YP_007433783.1| - 3.6e-44 150.0 1.1 4.5e-44 149.7 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DNase-RNase PF02577.14 gi|449066702|ref|YP_007433784.1| - 1.1e-05 25.1 0.3 1.6e-05 24.6 0.3 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.25 gi|449066703|ref|YP_007433785.1| - 5.8e-48 161.2 0.2 7.2e-48 160.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|449066704|ref|YP_007433786.1| - 8.6e-20 70.4 5.0 9.6e-14 51.0 0.5 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|449066704|ref|YP_007433786.1| - 4.3e-12 45.9 3.7 3.5e-11 43.0 0.8 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|449066704|ref|YP_007433786.1| - 7.4e-12 45.0 1.5 3e-06 27.0 0.2 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|449066704|ref|YP_007433786.1| - 0.015 15.1 4.5 0.28 11.1 0.4 2.7 1 1 0 2 2 2 0 KH domain HTH_ParB PF17762.1 gi|449066704|ref|YP_007433786.1| - 0.039 13.8 0.0 0.098 12.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain found in ParB protein Ribosomal_L7Ae PF01248.26 gi|449066705|ref|YP_007433787.1| - 5e-20 71.0 0.0 5.6e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Sigma70_r1_1 PF03979.14 gi|449066705|ref|YP_007433787.1| - 0.078 13.0 0.1 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 RNA_pol_Rpb1_5 PF04998.17 gi|449066706|ref|YP_007433788.1| - 6.6e-57 193.0 5.6 1.2e-56 192.1 5.6 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 SWM_repeat PF13753.6 gi|449066706|ref|YP_007433788.1| - 0.12 12.5 0.1 0.76 10.0 0.0 2.3 2 0 0 2 2 2 0 Putative flagellar system-associated repeat DUF3052 PF11253.8 gi|449066706|ref|YP_007433788.1| - 0.32 10.9 3.1 0.2 11.5 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3052) RNA_pol_Rpb1_1 PF04997.12 gi|449066707|ref|YP_007433789.1| - 2.5e-100 335.8 0.0 3.4e-100 335.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|449066707|ref|YP_007433789.1| - 1.9e-74 249.4 0.0 3.2e-74 248.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|449066707|ref|YP_007433789.1| - 5.4e-33 114.2 0.0 9e-33 113.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|449066707|ref|YP_007433789.1| - 4.1e-29 100.7 0.0 8.3e-29 99.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|449066707|ref|YP_007433789.1| - 6.5e-25 88.1 0.0 1.4e-24 86.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-ribbon_3 PF13248.6 gi|449066707|ref|YP_007433789.1| - 0.076 12.5 7.7 7.5 6.1 0.3 3.6 3 0 0 3 3 3 0 zinc-ribbon domain HTH_17 PF12728.7 gi|449066707|ref|YP_007433789.1| - 0.16 12.2 2.0 2.6 8.3 0.1 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain Rad50_zn_hook PF04423.14 gi|449066707|ref|YP_007433789.1| - 0.39 10.6 2.0 8.5 6.3 0.1 3.1 2 0 0 2 2 2 0 Rad50 zinc hook motif CpXC PF14353.6 gi|449066707|ref|YP_007433789.1| - 0.58 10.2 1.8 1 9.4 0.0 2.3 2 1 0 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|449066707|ref|YP_007433789.1| - 3.2 7.8 6.7 9.1 6.4 0.0 3.2 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|449066707|ref|YP_007433789.1| - 5 7.0 8.3 8.2 6.3 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|449066707|ref|YP_007433789.1| - 5.1 7.1 8.6 0.47 10.4 0.1 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS RNA_pol_Rpb2_6 PF00562.28 gi|449066708|ref|YP_007433790.1| - 5.6e-127 424.0 0.2 8e-127 423.5 0.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|449066708|ref|YP_007433790.1| - 1.1e-57 194.8 0.0 1.6e-57 194.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|449066708|ref|YP_007433790.1| - 3.8e-44 150.6 0.0 6.8e-44 149.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|449066708|ref|YP_007433790.1| - 1.8e-29 101.9 0.0 4.5e-29 100.7 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|449066708|ref|YP_007433790.1| - 5.8e-25 87.3 0.0 1.3e-24 86.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|449066708|ref|YP_007433790.1| - 4.7e-22 78.0 0.2 1.3e-21 76.7 0.2 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|449066708|ref|YP_007433790.1| - 5.8e-10 39.6 0.0 1.5e-09 38.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.19 gi|449066709|ref|YP_007433791.1| - 1e-31 108.6 0.1 1.2e-31 108.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain GTP_EFTU_D4 PF14578.6 gi|449066710|ref|YP_007433792.1| - 5.8e-37 125.5 5.4 2.1e-36 123.7 5.4 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|449066710|ref|YP_007433792.1| - 7e-34 117.1 0.1 1.9e-33 115.7 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|449066710|ref|YP_007433792.1| - 1.5e-14 54.0 2.0 4.2e-14 52.5 2.0 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|449066710|ref|YP_007433792.1| - 6.8e-11 42.4 1.3 5.9e-10 39.4 0.0 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|449066710|ref|YP_007433792.1| - 2e-07 31.1 0.4 1.2e-06 28.5 0.1 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|449066710|ref|YP_007433792.1| - 0.00013 22.2 0.0 0.00033 20.9 0.0 1.7 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|449066710|ref|YP_007433792.1| - 0.0015 18.2 0.2 0.012 15.2 0.1 2.7 2 1 0 2 2 2 1 Ras family Arf PF00025.21 gi|449066710|ref|YP_007433792.1| - 0.0021 17.5 0.8 1.6 8.2 0.1 3.0 2 1 0 2 2 2 2 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|449066710|ref|YP_007433792.1| - 0.0072 16.4 0.9 0.073 13.1 0.0 2.8 3 1 0 3 3 3 1 Dynamin family ATP_bind_1 PF03029.17 gi|449066710|ref|YP_007433792.1| - 0.0095 15.7 0.0 0.042 13.6 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein JLPA PF16668.5 gi|449066710|ref|YP_007433792.1| - 0.024 13.7 1.3 0.072 12.1 0.1 2.1 2 0 0 2 2 2 0 Adhesin from Campylobacter PduV-EutP PF10662.9 gi|449066710|ref|YP_007433792.1| - 0.059 13.1 0.5 2 8.1 0.0 3.5 4 1 1 5 5 5 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|449066710|ref|YP_007433792.1| - 0.22 11.4 5.3 2.6 7.9 0.0 3.5 3 1 1 4 4 4 0 RsgA GTPase AAA_23 PF13476.6 gi|449066710|ref|YP_007433792.1| - 3.7 8.0 6.1 0.58 10.6 0.1 2.5 2 2 0 2 2 2 0 AAA domain NDK PF00334.19 gi|449066711|ref|YP_007433793.1| - 1.4e-57 193.5 0.1 1.7e-57 193.2 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|449066712|ref|YP_007433794.1| - 1.2e-22 79.9 0.4 1.3e-22 79.7 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|449066712|ref|YP_007433794.1| - 6.7e-07 29.1 1.7 1.1e-06 28.5 1.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|449066712|ref|YP_007433794.1| - 0.00022 20.7 0.7 0.00042 19.7 0.7 1.4 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|449066712|ref|YP_007433794.1| - 0.0014 18.7 0.0 0.0027 17.8 0.0 1.5 1 1 1 2 2 2 1 YHS domain zf-MYND PF01753.18 gi|449066712|ref|YP_007433794.1| - 0.003 17.6 0.0 0.0051 16.9 0.0 1.3 1 1 0 1 1 1 1 MYND finger HZS_alpha PF18582.1 gi|449066712|ref|YP_007433794.1| - 0.017 15.6 0.0 0.017 15.5 0.0 1.1 1 0 0 1 1 1 0 Hydrazine synthase alpha subunit middle domain DUF3268 PF11672.8 gi|449066712|ref|YP_007433794.1| - 0.039 14.3 0.0 0.043 14.2 0.0 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain VATC PF18716.1 gi|449066712|ref|YP_007433794.1| - 0.048 13.5 3.3 0.27 11.1 3.3 2.0 1 1 0 1 1 1 0 Vms1-associating treble clef domain DUF2175 PF09943.9 gi|449066712|ref|YP_007433794.1| - 0.1 12.9 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) Ribosomal_S28e PF01200.18 gi|449066713|ref|YP_007433795.1| - 1.4e-31 108.2 2.3 1.7e-31 108.0 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.29 gi|449066713|ref|YP_007433795.1| - 0.24 11.4 2.4 0.64 10.1 0.1 2.3 2 1 0 2 2 2 0 KOW motif UPRTase PF14681.6 gi|449066714|ref|YP_007433796.1| - 2.3e-53 180.8 0.0 2.6e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|449066714|ref|YP_007433796.1| - 2e-11 43.6 0.1 2.8e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|449066714|ref|YP_007433796.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase GatB_N PF02934.15 gi|449066715|ref|YP_007433797.1| - 1e-96 323.6 0.0 1.4e-96 323.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|449066715|ref|YP_007433797.1| - 9.9e-41 139.1 7.5 9.9e-41 139.1 7.5 2.1 2 0 0 2 2 2 1 GatB domain Med7 PF05983.11 gi|449066715|ref|YP_007433797.1| - 0.0026 17.9 1.0 0.0052 16.9 1.0 1.4 1 0 0 1 1 1 1 MED7 protein Pribosyltran PF00156.27 gi|449066716|ref|YP_007433798.1| - 2.4e-16 59.7 0.1 4.1e-16 58.9 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|449066716|ref|YP_007433798.1| - 0.053 13.0 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_Tnp_4 PF13613.6 gi|449066716|ref|YP_007433798.1| - 0.091 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Radical_SAM PF04055.21 gi|449066718|ref|YP_007433800.1| - 1.9e-20 73.9 0.1 1.9e-20 73.9 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|449066718|ref|YP_007433800.1| - 5.9e-06 26.4 1.3 1.4e-05 25.2 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|449066718|ref|YP_007433800.1| - 6.8e-06 26.4 0.7 1.3e-05 25.5 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain Peptidase_S13 PF02113.15 gi|449066718|ref|YP_007433800.1| - 0.051 12.3 0.0 0.22 10.2 0.0 1.9 3 0 0 3 3 3 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family HMGL-like PF00682.19 gi|449066718|ref|YP_007433800.1| - 0.1 12.1 0.0 0.24 10.9 0.0 1.5 2 0 0 2 2 2 0 HMGL-like AIRS PF00586.24 gi|449066719|ref|YP_007433801.1| - 1.6e-12 47.9 0.0 2.8e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|449066719|ref|YP_007433801.1| - 0.00019 21.6 0.0 0.00029 21.0 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Lyase_1 PF00206.20 gi|449066720|ref|YP_007433802.1| - 4.2e-48 164.3 0.1 6.1e-48 163.8 0.1 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|449066720|ref|YP_007433802.1| - 1.3e-13 51.2 0.0 3.5e-13 49.9 0.0 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|449066720|ref|YP_007433802.1| - 7e-06 26.1 2.3 7.3e-06 26.1 0.7 1.9 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal DUF1297 PF06973.12 gi|449066721|ref|YP_007433803.1| - 9.7e-73 243.7 0.0 1.4e-72 243.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|449066721|ref|YP_007433803.1| - 9.9e-39 132.1 0.0 1.4e-38 131.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GARS_A PF01071.19 gi|449066721|ref|YP_007433803.1| - 0.063 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF1297 PF06973.12 gi|449066722|ref|YP_007433804.1| - 8.2e-82 273.3 0.0 1.1e-81 272.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|449066722|ref|YP_007433804.1| - 4.4e-46 155.8 0.0 6.4e-46 155.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF4756 PF15948.5 gi|449066722|ref|YP_007433804.1| - 0.038 13.8 0.0 0.098 12.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4756) Adenylsucc_synt PF00709.21 gi|449066723|ref|YP_007433805.1| - 4.5e-69 233.4 0.5 1.3e-35 123.1 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pyr_redox_2 PF07992.14 gi|449066724|ref|YP_007433806.1| - 2e-15 56.8 0.1 6.4e-05 22.3 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|449066724|ref|YP_007433806.1| - 1.5e-09 37.1 0.0 8.4e-05 21.4 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|449066724|ref|YP_007433806.1| - 2e-09 37.2 0.4 0.00092 18.6 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|449066724|ref|YP_007433806.1| - 5.7e-09 35.5 1.0 6.7e-05 22.1 0.0 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.24 gi|449066724|ref|YP_007433806.1| - 8.3e-06 25.6 0.1 0.0019 17.9 0.0 2.6 3 1 0 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|449066724|ref|YP_007433806.1| - 0.00015 21.0 0.0 0.00046 19.3 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|449066724|ref|YP_007433806.1| - 0.00015 22.3 0.1 1.5 9.4 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|449066724|ref|YP_007433806.1| - 0.00023 20.5 0.2 0.0016 17.8 0.0 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|449066724|ref|YP_007433806.1| - 0.00045 19.4 0.9 0.0013 17.9 0.0 2.1 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|449066724|ref|YP_007433806.1| - 0.00045 20.4 0.0 0.0019 18.4 0.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|449066724|ref|YP_007433806.1| - 0.0025 17.8 0.0 0.066 13.2 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|449066724|ref|YP_007433806.1| - 0.01 15.1 0.1 0.029 13.6 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.14 gi|449066724|ref|YP_007433806.1| - 0.061 12.2 0.0 0.16 10.8 0.0 1.6 2 0 0 2 2 2 0 Tryptophan halogenase GDC-P PF02347.16 gi|449066724|ref|YP_007433806.1| - 0.12 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein AsnC_trans_reg2 PF17805.1 gi|449066725|ref|YP_007433807.1| - 1e-28 99.3 4.9 4.4e-15 55.6 0.1 2.9 4 0 0 4 4 4 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|449066725|ref|YP_007433807.1| - 1.1e-06 28.4 0.0 3.9e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|449066725|ref|YP_007433807.1| - 1.8e-05 24.2 0.3 0.042 13.4 0.1 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding DUF2805 PF10985.8 gi|449066725|ref|YP_007433807.1| - 0.00012 22.4 0.3 0.025 15.0 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2805) Sigma70_r4 PF04545.16 gi|449066725|ref|YP_007433807.1| - 0.0036 16.8 0.0 0.12 11.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|449066725|ref|YP_007433807.1| - 0.0082 16.1 0.1 4.4 7.3 0.0 2.6 2 0 0 2 2 2 2 HTH domain MarR PF01047.22 gi|449066725|ref|YP_007433807.1| - 0.028 14.3 0.1 2.9 7.9 0.0 2.7 2 0 0 2 2 2 0 MarR family Peptidase_C71 PF12386.8 gi|449066725|ref|YP_007433807.1| - 0.047 13.3 0.2 0.12 12.0 0.2 1.7 1 0 0 1 1 1 0 Pseudomurein endo-isopeptidase Pei Aldo_ket_red PF00248.21 gi|449066725|ref|YP_007433807.1| - 0.056 12.6 0.1 0.91 8.6 0.0 2.2 2 0 0 2 2 2 0 Aldo/keto reductase family RelE PF06296.12 gi|449066725|ref|YP_007433807.1| - 0.063 13.4 0.3 0.25 11.4 0.1 2.1 3 0 0 3 3 3 0 RelE toxin of RelE / RelB toxin-antitoxin system HTH_27 PF13463.6 gi|449066725|ref|YP_007433807.1| - 0.067 13.7 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|449066725|ref|YP_007433807.1| - 0.15 12.1 0.2 8.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain PDT PF00800.18 gi|449066726|ref|YP_007433808.1| - 1.5e-17 64.0 0.2 2e-17 63.6 0.2 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|449066726|ref|YP_007433808.1| - 1.5e-05 24.6 0.0 4.9e-05 23.0 0.0 1.9 3 0 0 3 3 3 1 ACT domain PALP PF00291.25 gi|449066727|ref|YP_007433809.1| - 3.4e-77 259.7 0.6 4.1e-77 259.5 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|449066727|ref|YP_007433809.1| - 0.00067 19.4 1.1 0.0023 17.7 0.1 2.3 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|449066727|ref|YP_007433809.1| - 0.02 14.9 0.0 0.052 13.5 0.0 1.7 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.6 gi|449066727|ref|YP_007433809.1| - 0.062 13.9 0.0 0.19 12.4 0.0 1.8 1 0 0 1 1 1 0 ACT domain HIT PF01230.23 gi|449066728|ref|YP_007433810.1| - 2.5e-15 57.0 0.0 3.2e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|449066728|ref|YP_007433810.1| - 1.9e-07 31.0 0.2 3.5e-07 30.1 0.2 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|449066728|ref|YP_007433810.1| - 1.4e-05 25.6 0.0 2.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding COMM_domain PF07258.14 gi|449066728|ref|YP_007433810.1| - 0.025 14.7 0.0 0.051 13.7 0.0 1.4 1 0 0 1 1 1 0 COMM domain Rad51 PF08423.11 gi|449066729|ref|YP_007433811.1| - 6.6e-90 300.8 0.1 7.9e-90 300.6 0.1 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|449066729|ref|YP_007433811.1| - 3.7e-15 56.1 0.4 5.6e-15 55.5 0.4 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|449066729|ref|YP_007433811.1| - 8.7e-12 45.5 0.3 4e-11 43.4 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|449066729|ref|YP_007433811.1| - 4.6e-09 36.0 1.0 1.1e-08 34.7 1.0 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|449066729|ref|YP_007433811.1| - 4.8e-08 32.8 0.0 8e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|449066729|ref|YP_007433811.1| - 0.0035 17.1 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|449066729|ref|YP_007433811.1| - 0.011 16.3 0.0 0.021 15.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Cdd1 PF11731.8 gi|449066729|ref|YP_007433811.1| - 0.026 14.7 0.0 0.056 13.7 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus Bac_DnaA PF00308.18 gi|449066729|ref|YP_007433811.1| - 0.034 14.0 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_22 PF13401.6 gi|449066729|ref|YP_007433811.1| - 0.042 14.1 0.2 0.14 12.5 0.2 1.9 1 1 0 1 1 1 0 AAA domain HHH_2 PF12826.7 gi|449066729|ref|YP_007433811.1| - 0.074 13.2 0.1 0.22 11.7 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif MarR_2 PF12802.7 gi|449066729|ref|YP_007433811.1| - 0.11 12.4 1.3 4 7.4 0.1 2.9 3 0 0 3 3 3 0 MarR family DUF3173 PF11372.8 gi|449066729|ref|YP_007433811.1| - 0.12 12.2 0.0 0.42 10.5 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3173) BDV_P24 PF06595.11 gi|449066729|ref|YP_007433811.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Borna disease virus P24 protein UPF0113 PF03657.13 gi|449066730|ref|YP_007433812.1| - 1.8e-06 28.1 0.5 4.3e-06 26.9 0.5 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain Recep_L_domain PF01030.24 gi|449066730|ref|YP_007433812.1| - 0.05 13.7 1.1 0.7 10.0 0.1 2.1 2 0 0 2 2 2 0 Receptor L domain Methyltr_RsmB-F PF01189.17 gi|449066731|ref|YP_007433813.1| - 2.5e-53 180.7 0.0 3.6e-53 180.2 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|449066731|ref|YP_007433813.1| - 1.2e-13 51.3 0.0 2.6e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF PCMT PF01135.19 gi|449066731|ref|YP_007433813.1| - 0.0016 18.2 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|449066731|ref|YP_007433813.1| - 0.0024 18.0 0.0 0.0037 17.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|449066731|ref|YP_007433813.1| - 0.0032 16.9 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Fibrillarin PF01269.17 gi|449066731|ref|YP_007433813.1| - 0.0065 15.6 0.0 0.0091 15.1 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.20 gi|449066731|ref|YP_007433813.1| - 0.055 12.5 0.0 0.087 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|449066731|ref|YP_007433813.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CYTH PF01928.21 gi|449066732|ref|YP_007433814.1| - 3.5e-31 108.5 4.1 4.3e-31 108.2 4.1 1.0 1 0 0 1 1 1 1 CYTH domain Raptor_N PF14538.6 gi|449066732|ref|YP_007433814.1| - 0.0096 15.9 0.6 0.065 13.2 0.1 2.0 2 0 0 2 2 2 1 Raptor N-terminal CASPase like domain KIP1 PF07765.12 gi|449066732|ref|YP_007433814.1| - 0.055 13.6 1.3 1.2 9.3 0.1 2.8 3 1 0 3 3 3 0 KIP1-like protein SAM_adeno_trans PF01887.16 gi|449066733|ref|YP_007433815.1| - 5.6e-73 245.2 0.2 6.3e-73 245.1 0.2 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|449066734|ref|YP_007433816.1| - 1.1e-06 29.0 0.1 3.2e-06 27.4 0.1 1.7 1 1 0 1 1 1 1 Cytidylyltransferase-like DUF99 PF01949.16 gi|449066735|ref|YP_007433817.1| - 4.2e-17 62.1 0.0 8.1e-17 61.2 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF99 Cdc6_C PF09079.11 gi|449066736|ref|YP_007433818.1| - 1.8e-21 75.9 0.5 6.3e-21 74.1 0.1 2.2 3 0 0 3 3 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|449066736|ref|YP_007433818.1| - 4.4e-13 50.0 1.0 1.5e-10 41.7 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|449066736|ref|YP_007433818.1| - 6e-13 49.2 0.1 2.3e-12 47.3 0.0 1.9 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|449066736|ref|YP_007433818.1| - 2.6e-09 37.6 0.1 6.4e-09 36.3 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|449066736|ref|YP_007433818.1| - 3.1e-07 30.0 0.0 4.8e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|449066736|ref|YP_007433818.1| - 3e-06 27.3 0.8 2.4e-05 24.4 0.1 2.2 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|449066736|ref|YP_007433818.1| - 0.00038 19.4 0.2 0.013 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|449066736|ref|YP_007433818.1| - 0.0028 18.0 0.2 0.0089 16.3 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain Sigma54_activat PF00158.26 gi|449066736|ref|YP_007433818.1| - 0.0031 17.2 0.0 0.0073 16.0 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain NB-ARC PF00931.22 gi|449066736|ref|YP_007433818.1| - 0.0039 16.4 0.0 0.0061 15.8 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain ResIII PF04851.15 gi|449066736|ref|YP_007433818.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|449066736|ref|YP_007433818.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|449066736|ref|YP_007433818.1| - 0.013 14.7 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) KAP_NTPase PF07693.14 gi|449066736|ref|YP_007433818.1| - 0.015 14.5 0.1 0.19 10.9 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain FtsK_SpoIIIE PF01580.18 gi|449066736|ref|YP_007433818.1| - 0.025 14.0 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|449066736|ref|YP_007433818.1| - 0.028 14.2 0.6 6.3 6.5 0.0 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase Bac_DnaA PF00308.18 gi|449066736|ref|YP_007433818.1| - 0.03 14.1 0.9 0.28 11.0 0.9 2.1 1 1 0 1 1 1 0 Bacterial dnaA protein NACHT PF05729.12 gi|449066736|ref|YP_007433818.1| - 0.05 13.5 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain PIF1 PF05970.14 gi|449066736|ref|YP_007433818.1| - 0.054 12.7 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase Torsin PF06309.11 gi|449066736|ref|YP_007433818.1| - 0.064 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Torsin TsaE PF02367.17 gi|449066736|ref|YP_007433818.1| - 0.077 13.0 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE E2F_TDP PF02319.20 gi|449066736|ref|YP_007433818.1| - 0.082 13.0 2.6 0.93 9.6 0.1 2.9 3 0 0 3 3 2 0 E2F/DP family winged-helix DNA-binding domain AAA_lid_10 PF17872.1 gi|449066736|ref|YP_007433818.1| - 0.15 12.2 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA lid domain Sigma54_activ_2 PF14532.6 gi|449066736|ref|YP_007433818.1| - 0.17 12.0 0.0 0.28 11.3 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain PSP1 PF04468.12 gi|449066738|ref|YP_007433820.1| - 0.032 14.5 0.3 0.039 14.2 0.3 1.0 1 0 0 1 1 1 0 PSP1 C-terminal conserved region Fucose_iso_N2 PF07882.12 gi|449066738|ref|YP_007433820.1| - 0.21 11.2 0.9 6.3 6.3 0.1 1.9 1 1 1 2 2 2 0 L-fucose isomerase, second N-terminal domain MFS_1 PF07690.16 gi|449066740|ref|YP_007433822.1| - 6.6e-26 91.1 48.8 2.2e-15 56.4 25.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily SWIM PF04434.17 gi|449066742|ref|YP_007433824.1| - 0.00091 18.8 0.6 0.0018 17.9 0.6 1.5 1 0 0 1 1 1 1 SWIM zinc finger Elf1 PF05129.13 gi|449066744|ref|YP_007433826.1| - 4.2e-18 65.1 0.1 5.4e-18 64.8 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|449066744|ref|YP_007433826.1| - 0.0067 16.8 0.5 0.0093 16.3 0.5 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|449066744|ref|YP_007433826.1| - 0.035 13.5 1.0 0.37 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|449066744|ref|YP_007433826.1| - 0.099 12.9 1.7 0.39 11.0 1.7 1.9 1 1 0 1 1 1 0 Ribosomal L32p protein family zinc_ribbon_4 PF13717.6 gi|449066744|ref|YP_007433826.1| - 0.91 9.5 5.2 9 6.3 5.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.17 gi|449066745|ref|YP_007433827.1| - 8e-51 172.7 1.0 9.4e-51 172.4 1.0 1.0 1 0 0 1 1 1 1 PcrB family IMPDH PF00478.25 gi|449066745|ref|YP_007433827.1| - 3e-06 26.5 1.0 0.00032 19.8 0.5 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|449066745|ref|YP_007433827.1| - 0.00029 20.4 0.3 0.00052 19.5 0.3 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NAD_binding_7 PF13241.6 gi|449066745|ref|YP_007433827.1| - 0.004 17.6 3.1 0.0053 17.2 0.5 2.2 3 0 0 3 3 3 1 Putative NAD(P)-binding DHO_dh PF01180.21 gi|449066745|ref|YP_007433827.1| - 0.006 15.8 1.0 0.0087 15.3 1.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|449066745|ref|YP_007433827.1| - 0.012 14.8 0.6 0.069 12.3 0.3 2.0 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Shikimate_DH PF01488.20 gi|449066745|ref|YP_007433827.1| - 0.025 14.6 1.0 0.065 13.3 1.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase BON PF04972.17 gi|449066745|ref|YP_007433827.1| - 0.49 10.7 5.6 12 6.3 0.1 2.5 1 1 1 2 2 2 0 BON domain Sec61_beta PF03911.16 gi|449066746|ref|YP_007433828.1| - 4.5e-15 55.4 3.0 5.1e-15 55.2 3.0 1.1 1 0 0 1 1 1 1 Sec61beta family Ribo_biogen_C PF04034.13 gi|449066748|ref|YP_007433830.1| - 5.4e-36 123.1 0.0 6.5e-36 122.9 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|449066748|ref|YP_007433830.1| - 1e-12 47.6 0.3 1.5e-12 47.1 0.3 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AsnC_trans_reg PF01037.21 gi|449066749|ref|YP_007433831.1| - 2.2e-14 53.2 0.5 2.4e-14 53.0 0.5 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|449066749|ref|YP_007433831.1| - 0.0087 16.1 0.6 0.011 15.8 0.6 1.2 1 0 0 1 1 1 1 NapD protein DUF1743 PF08489.11 gi|449066750|ref|YP_007433832.1| - 3.5e-32 110.9 0.0 6.2e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.11 gi|449066750|ref|YP_007433832.1| - 0.0012 18.7 0.7 0.0029 17.5 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|449066750|ref|YP_007433832.1| - 0.0043 17.1 0.5 1.1 9.4 0.2 2.4 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|449066750|ref|YP_007433832.1| - 0.054 13.5 4.3 0.12 12.3 4.3 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|449066750|ref|YP_007433832.1| - 0.07 13.0 4.9 0.79 9.6 3.5 2.8 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L37ae PF01780.19 gi|449066750|ref|YP_007433832.1| - 0.071 13.2 0.6 0.16 12.0 0.6 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family C1_1 PF00130.22 gi|449066750|ref|YP_007433832.1| - 0.1 12.5 1.1 0.22 11.4 1.1 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2396 PF09654.10 gi|449066750|ref|YP_007433832.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2396) Thioredoxin_15 PF18403.1 gi|449066750|ref|YP_007433832.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain PhnA_Zn_Ribbon PF08274.12 gi|449066750|ref|YP_007433832.1| - 0.16 12.0 1.1 0.46 10.5 1.1 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.6 gi|449066750|ref|YP_007433832.1| - 0.17 12.3 6.1 1.1 9.9 1.0 2.7 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.26 gi|449066750|ref|YP_007433832.1| - 2.2 8.9 5.5 8.6 7.0 1.0 2.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|449066750|ref|YP_007433832.1| - 6.5 6.8 6.8 38 4.3 2.7 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Yip1 PF04893.17 gi|449066751|ref|YP_007433833.1| - 0.0042 16.8 28.6 0.014 15.1 4.1 2.9 2 1 1 3 3 3 2 Yip1 domain Oxidored_q4 PF00507.19 gi|449066751|ref|YP_007433833.1| - 0.0087 16.2 1.1 0.0087 16.2 1.1 2.8 2 1 1 3 3 3 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 UPF0182 PF03699.13 gi|449066751|ref|YP_007433833.1| - 0.076 11.1 10.0 0.088 10.9 10.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Bac_export_2 PF01312.19 gi|449066751|ref|YP_007433833.1| - 2.4 7.3 6.1 3.1 6.9 6.1 1.3 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family ABC_tran PF00005.27 gi|449066752|ref|YP_007433834.1| - 7e-24 84.9 0.0 1.4e-23 83.9 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449066752|ref|YP_007433834.1| - 5.3e-10 39.6 0.3 9.5e-05 22.3 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|449066752|ref|YP_007433834.1| - 1.5e-07 31.5 0.2 0.013 15.2 0.1 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|449066752|ref|YP_007433834.1| - 7.8e-06 26.5 1.1 9.9e-06 26.2 1.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|449066752|ref|YP_007433834.1| - 2.2e-05 24.0 0.1 0.022 14.2 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|449066752|ref|YP_007433834.1| - 8.6e-05 22.8 0.0 0.00014 22.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|449066752|ref|YP_007433834.1| - 0.00029 20.5 0.0 0.0005 19.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|449066752|ref|YP_007433834.1| - 0.008 16.1 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_27 PF13514.6 gi|449066752|ref|YP_007433834.1| - 0.019 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|449066752|ref|YP_007433834.1| - 0.02 15.6 0.0 0.064 14.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|449066752|ref|YP_007433834.1| - 0.091 13.1 0.1 0.16 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|449066752|ref|YP_007433834.1| - 0.097 12.6 0.9 5.8 6.8 0.0 3.0 2 1 1 3 3 3 0 NTPase AAA_30 PF13604.6 gi|449066752|ref|YP_007433834.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|449066752|ref|YP_007433834.1| - 0.13 10.9 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|449066752|ref|YP_007433834.1| - 0.14 12.2 0.3 1.9 8.5 0.2 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF3584 PF12128.8 gi|449066752|ref|YP_007433834.1| - 0.14 9.6 0.1 0.21 9.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4491 PF14898.6 gi|449066753|ref|YP_007433835.1| - 0.32 11.5 6.4 0.47 10.9 6.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4491) ABC2_membrane PF01061.24 gi|449066755|ref|YP_007433837.1| - 2.2e-10 40.3 29.3 2.2e-10 40.3 29.3 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|449066755|ref|YP_007433837.1| - 1.2e-05 24.6 39.0 1.2e-05 24.6 39.0 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|449066756|ref|YP_007433838.1| - 7.4e-26 91.3 0.0 1.1e-25 90.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449066756|ref|YP_007433838.1| - 3.4e-14 53.4 3.6 2.1e-07 31.0 0.6 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449066756|ref|YP_007433838.1| - 6.7e-08 32.2 1.6 0.0062 16.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|449066756|ref|YP_007433838.1| - 2.8e-05 24.0 0.2 7.8e-05 22.5 0.1 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|449066756|ref|YP_007433838.1| - 6.3e-05 23.6 0.1 0.00013 22.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|449066756|ref|YP_007433838.1| - 9.9e-05 22.0 0.2 0.00022 20.9 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|449066756|ref|YP_007433838.1| - 0.0048 17.2 0.0 0.0088 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|449066756|ref|YP_007433838.1| - 0.0093 15.6 0.1 0.21 11.2 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|449066756|ref|YP_007433838.1| - 0.0099 15.8 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|449066756|ref|YP_007433838.1| - 0.016 15.1 0.1 0.14 12.0 0.0 2.4 2 1 1 3 3 3 0 NACHT domain MMR_HSR1 PF01926.23 gi|449066756|ref|YP_007433838.1| - 0.017 15.2 0.8 0.046 13.8 0.2 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|449066756|ref|YP_007433838.1| - 0.027 14.9 0.0 0.048 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_13 PF13166.6 gi|449066756|ref|YP_007433838.1| - 0.029 13.1 0.0 0.036 12.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|449066756|ref|YP_007433838.1| - 0.029 14.9 0.1 0.12 12.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|449066756|ref|YP_007433838.1| - 0.045 13.5 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|449066756|ref|YP_007433838.1| - 0.072 12.4 0.1 2.8 7.1 0.0 2.1 2 0 0 2 2 2 0 Septin HTH_45 PF14947.6 gi|449066758|ref|YP_007433840.1| - 0.00034 20.5 0.2 0.00063 19.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|449066758|ref|YP_007433840.1| - 0.0012 18.6 0.9 0.0014 18.4 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|449066758|ref|YP_007433840.1| - 0.0085 15.6 0.0 0.021 14.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|449066758|ref|YP_007433840.1| - 0.014 15.6 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain LRR_6 PF13516.6 gi|449066758|ref|YP_007433840.1| - 0.12 12.5 0.1 1.8 8.8 0.0 2.5 2 0 0 2 2 2 0 Leucine Rich repeat DUF4898 PF16239.5 gi|449066759|ref|YP_007433841.1| - 0.046 13.7 0.1 0.058 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4898) NAD_binding_8 PF13450.6 gi|449066761|ref|YP_007433843.1| - 0.0032 17.7 0.0 0.011 16.0 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DUF4959 PF16323.5 gi|449066762|ref|YP_007433844.1| - 0.13 12.5 0.5 25 5.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4959) zf-C2H2_4 PF13894.6 gi|449066763|ref|YP_007433845.1| - 0.87 10.6 3.1 15 6.7 0.0 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger SIS PF01380.22 gi|449066764|ref|YP_007433846.1| - 3.1e-16 59.4 0.1 6.3e-16 58.4 0.1 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|449066764|ref|YP_007433846.1| - 9.9e-06 25.6 0.9 0.0023 17.9 0.3 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|449066764|ref|YP_007433846.1| - 0.0012 18.7 0.7 0.51 10.2 0.1 2.3 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase AAA_10 PF12846.7 gi|449066765|ref|YP_007433847.1| - 1.9e-11 43.5 1.1 8.7e-08 31.5 0.1 2.5 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.12 gi|449066765|ref|YP_007433847.1| - 8e-07 28.0 0.0 0.0031 16.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|449066765|ref|YP_007433847.1| - 6.7e-05 23.1 2.0 6.7e-05 23.1 2.0 2.6 2 1 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|449066765|ref|YP_007433847.1| - 0.0021 17.5 0.0 0.02 14.2 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family T4SS-DNA_transf PF02534.14 gi|449066765|ref|YP_007433847.1| - 0.011 14.5 0.1 0.033 13.0 0.0 1.7 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer IstB_IS21 PF01695.17 gi|449066765|ref|YP_007433847.1| - 0.037 13.8 0.0 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|449066765|ref|YP_007433847.1| - 0.044 14.0 0.1 2.4 8.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|449066765|ref|YP_007433847.1| - 0.088 11.7 0.1 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF4795 PF16043.5 gi|449066766|ref|YP_007433848.1| - 0.27 10.8 0.2 0.27 10.8 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Semialdhyde_dh PF01118.24 gi|449066767|ref|YP_007433849.1| - 4.2e-34 117.6 0.0 1.4e-33 115.9 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|449066767|ref|YP_007433849.1| - 8.2e-08 32.5 0.0 1.1e-07 32.1 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|449066767|ref|YP_007433849.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|449066767|ref|YP_007433849.1| - 0.14 12.8 0.0 0.38 11.4 0.0 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|449066767|ref|YP_007433849.1| - 0.2 11.9 0.0 0.33 11.2 0.0 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain AA_kinase PF00696.28 gi|449066768|ref|YP_007433850.1| - 2.9e-30 105.6 2.1 3.3e-30 105.4 2.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family ATLF PF07737.11 gi|449066768|ref|YP_007433850.1| - 0.22 10.8 1.2 1.7 7.9 0.2 2.3 2 1 0 2 2 2 0 Anthrax toxin lethal factor, N- and C-terminal domain HTH_24 PF13412.6 gi|449066769|ref|YP_007433851.1| - 2.6e-13 49.3 1.1 2.1e-12 46.4 0.3 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|449066769|ref|YP_007433851.1| - 4.5e-13 49.0 0.0 6.9e-13 48.4 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|449066769|ref|YP_007433851.1| - 5.3e-13 48.6 0.0 1.8e-12 46.9 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|449066769|ref|YP_007433851.1| - 6.2e-06 26.1 1.9 1.1e-05 25.3 0.2 2.2 3 0 0 3 3 3 1 HTH domain MarR_2 PF12802.7 gi|449066769|ref|YP_007433851.1| - 0.00037 20.3 0.0 0.00061 19.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|449066769|ref|YP_007433851.1| - 0.0015 18.4 0.1 0.0059 16.5 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.11 gi|449066769|ref|YP_007433851.1| - 0.0033 17.4 0.1 0.0086 16.1 0.0 1.7 1 1 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain NapD PF03927.13 gi|449066769|ref|YP_007433851.1| - 0.0048 16.9 0.2 0.0082 16.2 0.2 1.4 1 0 0 1 1 1 1 NapD protein HTH_20 PF12840.7 gi|449066769|ref|YP_007433851.1| - 0.0053 16.8 0.0 0.008 16.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|449066769|ref|YP_007433851.1| - 0.006 16.7 0.1 0.012 15.8 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_DeoR PF08220.12 gi|449066769|ref|YP_007433851.1| - 0.0066 16.2 0.2 0.012 15.3 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|449066769|ref|YP_007433851.1| - 0.0072 16.2 0.1 0.014 15.2 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|449066769|ref|YP_007433851.1| - 0.0087 15.8 0.1 0.017 14.9 0.0 1.4 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|449066769|ref|YP_007433851.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rio2_N PF09202.11 gi|449066769|ref|YP_007433851.1| - 0.012 15.8 0.0 0.2 11.9 0.1 2.2 2 0 0 2 2 2 0 Rio2, N-terminal HTH_27 PF13463.6 gi|449066769|ref|YP_007433851.1| - 0.016 15.7 0.1 0.025 15.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|449066769|ref|YP_007433851.1| - 0.016 15.3 0.1 0.031 14.4 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF4423 PF14394.6 gi|449066769|ref|YP_007433851.1| - 0.027 14.2 0.3 0.043 13.5 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|449066769|ref|YP_007433851.1| - 0.042 14.1 0.0 0.09 13.0 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.10 gi|449066769|ref|YP_007433851.1| - 0.049 13.7 0.1 0.079 13.1 0.1 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator PAX PF00292.18 gi|449066769|ref|YP_007433851.1| - 0.057 13.3 0.6 0.95 9.4 0.6 2.1 1 1 0 1 1 1 0 'Paired box' domain DMAP1_like PF17024.5 gi|449066769|ref|YP_007433851.1| - 0.069 13.3 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Putative DMAP1-like Rrf2 PF02082.20 gi|449066769|ref|YP_007433851.1| - 0.08 13.3 0.1 0.18 12.2 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.13 gi|449066769|ref|YP_007433851.1| - 0.087 13.4 0.0 0.15 12.7 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_36 PF13730.6 gi|449066769|ref|YP_007433851.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|449066769|ref|YP_007433851.1| - 0.11 12.2 0.2 0.39 10.4 0.2 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|449066769|ref|YP_007433851.1| - 0.13 12.1 0.0 0.87 9.5 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Desulfoferrod_N PF06397.12 gi|449066770|ref|YP_007433852.1| - 0.013 15.1 0.7 0.073 12.7 0.1 2.2 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Lar_restr_allev PF14354.6 gi|449066770|ref|YP_007433852.1| - 0.023 15.0 0.0 0.026 14.9 0.0 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|449066770|ref|YP_007433852.1| - 0.039 13.4 0.5 0.34 10.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|449066770|ref|YP_007433852.1| - 0.063 13.2 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|449066770|ref|YP_007433852.1| - 0.082 12.7 0.8 2.5 7.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|449066770|ref|YP_007433852.1| - 0.16 11.5 2.0 0.31 10.6 2.0 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding RimK PF08443.11 gi|449066771|ref|YP_007433853.1| - 1.1e-33 116.4 0.0 2.2e-33 115.5 0.0 1.4 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|449066771|ref|YP_007433853.1| - 8.7e-12 44.8 0.0 1.2e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|449066771|ref|YP_007433853.1| - 2.4e-05 23.7 0.1 0.0012 18.2 0.0 2.3 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|449066771|ref|YP_007433853.1| - 5e-05 22.9 0.0 8.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|449066771|ref|YP_007433853.1| - 0.00022 21.3 0.0 0.00033 20.7 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|449066771|ref|YP_007433853.1| - 0.00071 19.1 0.0 0.0016 17.9 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|449066771|ref|YP_007433853.1| - 0.0032 17.1 0.0 0.0064 16.1 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|449066771|ref|YP_007433853.1| - 0.028 13.9 0.2 1.5 8.3 0.1 2.4 1 1 1 2 2 2 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|449066771|ref|YP_007433853.1| - 0.036 13.6 0.0 0.33 10.5 0.0 2.1 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus ATP-grasp_2 PF08442.10 gi|449066771|ref|YP_007433853.1| - 0.043 13.4 0.0 0.077 12.6 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain Fungal_lectin PF07938.12 gi|449066771|ref|YP_007433853.1| - 0.08 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Fungal fucose-specific lectin Aminotran_3 PF00202.21 gi|449066772|ref|YP_007433854.1| - 6.4e-112 374.2 0.0 8.5e-112 373.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|449066772|ref|YP_007433854.1| - 0.00039 19.7 0.0 0.001 18.4 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II PC_rep PF01851.22 gi|449066772|ref|YP_007433854.1| - 0.15 12.6 0.0 0.43 11.1 0.0 1.8 1 0 0 1 1 1 0 Proteasome/cyclosome repeat Peptidase_M20 PF01546.28 gi|449066773|ref|YP_007433855.1| - 5.4e-26 91.6 0.0 6.4e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|449066773|ref|YP_007433855.1| - 0.00012 22.0 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF4897 PF16238.5 gi|449066773|ref|YP_007433855.1| - 0.055 13.3 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) Prenyltransf PF01255.19 gi|449066774|ref|YP_007433856.1| - 3.6e-67 226.2 0.0 4.2e-67 226.0 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Fzo_mitofusin PF04799.13 gi|449066774|ref|YP_007433856.1| - 0.051 13.1 0.2 0.086 12.4 0.2 1.3 1 0 0 1 1 1 0 fzo-like conserved region Ribosomal_S8e PF01201.22 gi|449066775|ref|YP_007433857.1| - 3.2e-34 118.0 0.3 3.6e-34 117.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|449066776|ref|YP_007433858.1| - 3.1e-05 24.8 0.1 4.1e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 SRP19 protein XRN1_D2_D3 PF18334.1 gi|449066776|ref|YP_007433858.1| - 0.0034 17.6 0.0 0.0049 17.1 0.0 1.2 1 0 0 1 1 1 1 Exoribonuclease Xrn1 D2/D3 domain LMBR1 PF04791.16 gi|449066777|ref|YP_007433859.1| - 3.6 6.4 10.4 4.4 6.1 10.4 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Epimerase PF01370.21 gi|449066778|ref|YP_007433860.1| - 8.1e-43 146.6 0.1 1.1e-42 146.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|449066778|ref|YP_007433860.1| - 5.4e-41 141.1 0.6 4.8e-40 138.0 0.6 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|449066778|ref|YP_007433860.1| - 5e-15 55.3 0.0 6.1e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|449066778|ref|YP_007433860.1| - 3.4e-13 49.2 0.6 4.6e-13 48.8 0.6 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|449066778|ref|YP_007433860.1| - 7.9e-10 38.3 0.1 6.2e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|449066778|ref|YP_007433860.1| - 8.6e-08 31.7 1.5 2.5e-06 26.8 1.5 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|449066778|ref|YP_007433860.1| - 0.00077 19.4 0.1 0.03 14.2 0.1 2.2 2 0 0 2 2 2 1 KR domain NmrA PF05368.13 gi|449066778|ref|YP_007433860.1| - 0.015 14.8 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.6 gi|449066778|ref|YP_007433860.1| - 0.058 13.3 0.0 0.28 11.1 0.0 1.9 1 1 0 1 1 1 0 NAD(P)H-binding TPP_enzyme_M PF00205.22 gi|449066779|ref|YP_007433861.1| - 2.1e-40 137.6 0.1 5.7e-40 136.2 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.18 gi|449066779|ref|YP_007433861.1| - 7.9e-25 87.4 0.0 1.3e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PNTB PF02233.16 gi|449066779|ref|YP_007433861.1| - 0.003 16.5 0.0 0.0052 15.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit Imm30 PF15565.6 gi|449066779|ref|YP_007433861.1| - 0.045 13.8 0.1 2.5 8.2 0.1 2.7 2 0 0 2 2 2 0 Immunity protein 30 DUF2204 PF09970.9 gi|449066780|ref|YP_007433862.1| - 3e-55 186.7 4.5 3.3e-55 186.5 4.5 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) Ribosomal_L40e PF01020.17 gi|449066781|ref|YP_007433863.1| - 9.3e-09 35.0 4.6 1.1e-08 34.8 4.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DUF35_N PF12172.8 gi|449066781|ref|YP_007433863.1| - 0.0011 18.7 0.4 0.0016 18.3 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|449066781|ref|YP_007433863.1| - 0.0044 17.0 0.3 0.0047 16.9 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|449066781|ref|YP_007433863.1| - 0.012 15.3 0.8 0.019 14.7 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.18 gi|449066781|ref|YP_007433863.1| - 0.065 12.6 2.3 0.091 12.1 2.3 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.6 gi|449066781|ref|YP_007433863.1| - 0.068 12.6 1.0 0.098 12.1 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|449066781|ref|YP_007433863.1| - 0.18 12.0 2.5 1.1 9.4 2.7 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|449066781|ref|YP_007433863.1| - 0.24 11.2 3.3 0.98 9.2 3.3 1.8 1 1 0 1 1 1 0 Rubredoxin metal binding domain KH_5 PF13184.6 gi|449066782|ref|YP_007433864.1| - 0.0017 18.4 0.1 0.0035 17.4 0.1 1.5 1 0 0 1 1 1 1 NusA-like KH domain ECSIT_C PF14784.6 gi|449066782|ref|YP_007433864.1| - 0.061 13.7 0.0 0.58 10.5 0.0 2.1 2 0 0 2 2 2 0 C-terminal domain of the ECSIT protein tRNA-synt_2 PF00152.20 gi|449066783|ref|YP_007433865.1| - 9.7e-92 307.4 0.0 1.2e-91 307.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|449066783|ref|YP_007433865.1| - 6e-15 55.0 0.2 1.5e-14 53.7 0.2 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PUB PF09409.10 gi|449066783|ref|YP_007433865.1| - 0.3 11.1 1.3 0.95 9.4 0.6 2.2 2 1 0 2 2 2 0 PUB domain TruD PF01142.18 gi|449066784|ref|YP_007433866.1| - 1.7e-60 205.0 0.3 5.4e-51 173.7 0.0 2.0 1 1 0 2 2 2 2 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.16 gi|449066785|ref|YP_007433867.1| - 5.1e-44 149.3 0.2 5.7e-44 149.2 0.2 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.20 gi|449066785|ref|YP_007433867.1| - 0.0049 16.8 0.3 0.02 14.8 0.0 1.8 1 1 1 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases FA_synthesis PF02504.15 gi|449066785|ref|YP_007433867.1| - 0.076 12.1 0.1 0.092 11.8 0.1 1.1 1 0 0 1 1 1 0 Fatty acid synthesis protein DUF1610 PF07754.11 gi|449066786|ref|YP_007433868.1| - 1.9e-14 53.3 6.6 1.4e-11 44.1 2.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|449066786|ref|YP_007433868.1| - 2.2e-06 27.6 19.8 0.00019 21.4 11.4 2.4 1 1 1 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|449066786|ref|YP_007433868.1| - 3.9e-05 23.5 8.4 0.0002 21.2 2.0 2.2 1 1 1 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|449066786|ref|YP_007433868.1| - 0.00012 21.4 16.5 0.55 9.7 5.2 3.9 3 1 0 3 3 3 3 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|449066786|ref|YP_007433868.1| - 0.00076 19.3 8.9 1.7 8.7 0.0 3.4 3 1 0 3 3 3 2 Nudix N-terminal zf-UDP PF14569.6 gi|449066786|ref|YP_007433868.1| - 0.00081 19.5 7.0 0.00091 19.3 7.0 1.1 1 0 0 1 1 1 1 Zinc-binding RING-finger A2L_zn_ribbon PF08792.10 gi|449066786|ref|YP_007433868.1| - 0.0019 17.8 15.5 0.013 15.2 3.8 2.9 2 2 0 2 2 2 1 A2L zinc ribbon domain ADK_lid PF05191.14 gi|449066786|ref|YP_007433868.1| - 0.0031 17.4 7.6 0.038 14.0 3.0 2.5 2 1 0 2 2 2 1 Adenylate kinase, active site lid HypA PF01155.19 gi|449066786|ref|YP_007433868.1| - 0.0034 17.4 7.8 0.0058 16.6 0.4 2.0 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|449066786|ref|YP_007433868.1| - 0.0056 16.5 11.3 0.94 9.4 0.0 3.3 2 1 1 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|449066786|ref|YP_007433868.1| - 0.0067 16.5 2.1 0.0067 16.5 2.1 2.5 1 1 0 2 2 2 1 Zinc ribbon domain zf-CHY PF05495.12 gi|449066786|ref|YP_007433868.1| - 0.0083 16.6 9.2 0.16 12.4 0.3 2.0 1 1 1 2 2 2 2 CHY zinc finger zf-MYND PF01753.18 gi|449066786|ref|YP_007433868.1| - 0.0092 16.1 2.2 0.0092 16.1 2.2 2.1 1 1 1 2 2 2 1 MYND finger HscB_4_cys PF18256.1 gi|449066786|ref|YP_007433868.1| - 0.012 15.5 1.8 0.012 15.5 1.8 2.7 3 0 0 3 3 2 0 Co-chaperone HscB tetracysteine metal binding motif DUF1272 PF06906.11 gi|449066786|ref|YP_007433868.1| - 0.013 15.5 8.3 0.44 10.7 0.6 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1272) zf-ACC PF17848.1 gi|449066786|ref|YP_007433868.1| - 0.014 15.4 14.0 1.6 8.9 0.4 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|449066786|ref|YP_007433868.1| - 0.015 14.9 9.8 3.7 7.2 0.4 3.5 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger Prok-RING_1 PF14446.6 gi|449066786|ref|YP_007433868.1| - 0.017 15.1 4.6 0.017 15.1 4.6 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.11 gi|449066786|ref|YP_007433868.1| - 0.019 15.1 3.2 0.019 15.1 3.2 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC5 PF06221.13 gi|449066786|ref|YP_007433868.1| - 0.021 14.8 2.6 0.021 14.8 2.6 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type tRNA-synt_1f PF01921.18 gi|449066786|ref|YP_007433868.1| - 0.022 13.7 0.1 0.025 13.5 0.1 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (K) Dynactin_p62 PF05502.13 gi|449066786|ref|YP_007433868.1| - 0.025 13.4 6.4 0.03 13.1 6.4 1.2 1 0 0 1 1 1 0 Dynactin p62 family Rpr2 PF04032.16 gi|449066786|ref|YP_007433868.1| - 0.026 14.8 8.7 0.65 10.3 2.6 3.0 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Auto_anti-p27 PF06677.12 gi|449066786|ref|YP_007433868.1| - 0.027 14.6 1.7 0.027 14.6 1.7 2.6 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|449066786|ref|YP_007433868.1| - 0.029 13.9 15.1 0.18 11.3 0.3 3.3 2 1 1 3 3 3 0 TFIIB zinc-binding zf-piccolo PF05715.13 gi|449066786|ref|YP_007433868.1| - 0.031 14.4 10.8 0.47 10.6 0.7 2.3 1 1 1 2 2 2 0 Piccolo Zn-finger C1_2 PF03107.16 gi|449066786|ref|YP_007433868.1| - 0.034 14.5 12.0 0.26 11.6 2.6 2.2 1 1 1 2 2 2 0 C1 domain PolC_DP2 PF03833.13 gi|449066786|ref|YP_007433868.1| - 0.056 11.3 2.0 0.06 11.2 2.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 PhnA_Zn_Ribbon PF08274.12 gi|449066786|ref|YP_007433868.1| - 0.076 13.0 9.1 1.2 9.2 1.2 3.2 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|449066786|ref|YP_007433868.1| - 0.08 12.7 22.3 0.58 9.9 6.8 3.9 2 2 1 3 3 3 0 zinc-ribbon domain zf-RING_9 PF13901.6 gi|449066786|ref|YP_007433868.1| - 0.08 12.9 6.2 0.093 12.7 6.2 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon zinc_ribbon_10 PF10058.9 gi|449066786|ref|YP_007433868.1| - 0.095 12.4 16.1 0.41 10.4 3.2 3.6 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein FUR PF01475.19 gi|449066786|ref|YP_007433868.1| - 0.2 11.8 0.8 1.8 8.8 0.0 2.2 2 1 1 3 3 2 0 Ferric uptake regulator family PHD PF00628.29 gi|449066786|ref|YP_007433868.1| - 0.2 11.5 10.8 1.3 8.9 1.5 2.5 1 1 1 2 2 2 0 PHD-finger zf_C2H2_10 PF18414.1 gi|449066786|ref|YP_007433868.1| - 0.21 11.2 7.2 1.4 8.5 0.5 2.7 3 0 0 3 3 2 0 C2H2 type zinc-finger zinc_ribbon_9 PF14369.6 gi|449066786|ref|YP_007433868.1| - 0.28 11.5 14.2 0.51 10.6 1.8 3.3 2 2 1 3 3 3 0 zinc-ribbon DUF2321 PF10083.9 gi|449066786|ref|YP_007433868.1| - 0.3 10.7 6.3 1.3 8.7 6.5 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc_ribbon_4 PF13717.6 gi|449066786|ref|YP_007433868.1| - 0.35 10.8 10.1 4.3 7.3 0.0 3.7 3 1 0 4 4 4 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|449066786|ref|YP_007433868.1| - 0.38 10.5 11.1 0.22 11.2 2.6 2.9 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-RING_7 PF02591.15 gi|449066786|ref|YP_007433868.1| - 0.39 11.0 0.2 0.39 11.0 0.2 3.7 3 1 0 3 3 2 0 C4-type zinc ribbon domain NinF PF05810.12 gi|449066786|ref|YP_007433868.1| - 0.41 10.6 6.7 0.28 11.1 0.5 2.5 1 1 1 2 2 2 0 NinF protein CpXC PF14353.6 gi|449066786|ref|YP_007433868.1| - 0.52 10.4 8.7 13 5.9 0.4 3.1 1 1 2 3 3 3 0 CpXC protein Chordopox_RPO7 PF05864.12 gi|449066786|ref|YP_007433868.1| - 0.6 10.4 4.5 1.2 9.4 0.0 2.9 2 1 1 3 3 3 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Elf1 PF05129.13 gi|449066786|ref|YP_007433868.1| - 0.71 10.0 8.2 8 6.6 0.0 2.6 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like IBR PF01485.21 gi|449066786|ref|YP_007433868.1| - 0.89 9.8 10.1 21 5.4 10.1 2.2 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain RNA_POL_M_15KD PF02150.16 gi|449066786|ref|YP_007433868.1| - 0.96 9.4 10.6 0.37 10.7 0.8 2.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_15 PF17032.5 gi|449066786|ref|YP_007433868.1| - 0.99 10.2 12.1 83 4.0 12.4 2.3 1 1 0 1 1 1 0 zinc-ribbon family Rubredoxin_2 PF18073.1 gi|449066786|ref|YP_007433868.1| - 1 9.1 0.1 1 9.1 0.1 3.5 4 0 0 4 4 3 0 Rubredoxin metal binding domain Acetone_carb_G PF08882.11 gi|449066786|ref|YP_007433868.1| - 1 9.5 6.5 1.9 8.7 1.0 2.5 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-C3H2C3 PF17122.5 gi|449066786|ref|YP_007433868.1| - 1 9.4 9.8 0.56 10.3 0.9 2.4 2 0 0 2 2 2 0 Zinc-finger Zn_ribbon_17 PF17120.5 gi|449066786|ref|YP_007433868.1| - 1.1 9.0 12.7 13 5.5 4.5 3.0 1 1 2 3 3 3 0 Zinc-ribbon, C4HC2 type Sgf11 PF08209.11 gi|449066786|ref|YP_007433868.1| - 1.2 8.7 12.8 1.4 8.5 0.1 3.9 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) DpnI PF06044.12 gi|449066786|ref|YP_007433868.1| - 1.6 8.3 6.8 0.57 9.8 4.4 1.3 1 1 0 1 1 1 0 Dam-replacing family Rubredoxin PF00301.20 gi|449066786|ref|YP_007433868.1| - 1.7 8.7 9.9 6.7 6.8 1.0 3.2 2 1 1 3 3 3 0 Rubredoxin zf-LITAF-like PF10601.9 gi|449066786|ref|YP_007433868.1| - 1.8 8.9 13.6 2.2 8.6 2.3 3.5 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_5 PF14634.6 gi|449066786|ref|YP_007433868.1| - 1.8 8.6 11.1 19 5.3 11.1 2.3 1 1 0 1 1 1 0 zinc-RING finger domain DUF1258 PF06869.12 gi|449066786|ref|YP_007433868.1| - 2 7.8 6.6 2.6 7.5 3.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1258) zf-tcix PF14952.6 gi|449066786|ref|YP_007433868.1| - 2.1 8.1 13.1 4.4 7.0 2.1 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-AN1 PF01428.16 gi|449066786|ref|YP_007433868.1| - 2.9 8.1 12.1 34 4.7 0.1 3.0 1 1 2 3 3 3 0 AN1-like Zinc finger zf-TFIIB PF13453.6 gi|449066786|ref|YP_007433868.1| - 2.9 7.3 14.6 1.1e+02 2.3 14.7 2.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.19 gi|449066786|ref|YP_007433868.1| - 4.8 7.0 14.8 3.1 7.6 0.5 3.4 1 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-Mss51 PF13824.6 gi|449066786|ref|YP_007433868.1| - 5.2 7.3 12.8 9.7 6.4 1.9 2.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.26 gi|449066786|ref|YP_007433868.1| - 6.7 7.4 15.7 16 6.1 0.6 3.9 3 1 0 3 3 3 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|449066786|ref|YP_007433868.1| - 8.9 6.9 19.6 2.8 8.5 1.0 4.0 2 2 1 3 3 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|449066786|ref|YP_007433868.1| - 9 6.4 21.2 12 5.9 0.5 3.8 2 1 1 3 3 3 0 Transposase zinc-ribbon domain EF1_GNE PF00736.19 gi|449066787|ref|YP_007433869.1| - 7.7e-19 67.7 0.1 8.5e-19 67.5 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AAA PF00004.29 gi|449066788|ref|YP_007433870.1| - 2.3e-100 332.2 0.0 5.1e-49 166.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|449066788|ref|YP_007433870.1| - 1.4e-33 114.4 3.6 4.7e-17 61.5 0.0 3.0 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|449066788|ref|YP_007433870.1| - 1.4e-32 111.7 1.8 4.7e-32 110.0 0.9 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|449066788|ref|YP_007433870.1| - 1.2e-16 60.8 0.0 4.4e-08 33.0 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|449066788|ref|YP_007433870.1| - 6.9e-16 57.8 2.2 6.9e-16 57.8 2.2 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|449066788|ref|YP_007433870.1| - 7.7e-15 55.7 0.3 6.9e-06 26.5 0.0 4.7 3 2 1 4 4 4 2 AAA ATPase domain AAA_2 PF07724.14 gi|449066788|ref|YP_007433870.1| - 1.3e-14 54.7 0.1 8.9e-07 29.2 0.0 3.0 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|449066788|ref|YP_007433870.1| - 4.5e-12 46.4 1.1 0.0047 17.2 0.0 4.7 2 2 1 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|449066788|ref|YP_007433870.1| - 1.8e-11 44.2 1.3 0.00041 20.4 0.1 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|449066788|ref|YP_007433870.1| - 1.7e-10 40.7 0.0 0.00011 21.5 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|449066788|ref|YP_007433870.1| - 1.7e-10 41.2 0.0 0.0011 19.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|449066788|ref|YP_007433870.1| - 8.8e-10 38.7 0.0 0.0018 18.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|449066788|ref|YP_007433870.1| - 1.4e-08 34.6 0.0 0.0044 16.8 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|449066788|ref|YP_007433870.1| - 2.7e-08 34.4 0.0 0.0085 16.6 0.0 3.0 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|449066788|ref|YP_007433870.1| - 7.8e-08 32.2 2.2 0.00016 21.6 0.1 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain Mg_chelatase PF01078.21 gi|449066788|ref|YP_007433870.1| - 2.8e-07 30.2 0.6 0.0078 15.6 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|449066788|ref|YP_007433870.1| - 4.9e-07 29.7 0.0 0.032 13.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|449066788|ref|YP_007433870.1| - 8.1e-07 29.4 0.3 0.039 14.2 0.0 3.4 3 1 0 3 3 3 2 AAA domain ATPase_2 PF01637.18 gi|449066788|ref|YP_007433870.1| - 1.4e-06 28.4 0.6 0.029 14.3 0.1 4.2 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|449066788|ref|YP_007433870.1| - 1.5e-06 28.6 0.0 0.04 14.3 0.0 2.9 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|449066788|ref|YP_007433870.1| - 3.3e-06 26.9 0.1 0.37 10.5 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.27 gi|449066788|ref|YP_007433870.1| - 6.5e-06 26.7 0.0 0.15 12.6 0.0 2.7 2 1 0 2 2 2 2 ABC transporter AAA_3 PF07726.11 gi|449066788|ref|YP_007433870.1| - 9.2e-06 25.5 0.0 0.11 12.4 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|449066788|ref|YP_007433870.1| - 9.4e-06 25.0 0.2 0.086 12.1 0.0 3.3 3 0 0 3 3 3 2 Zeta toxin TsaE PF02367.17 gi|449066788|ref|YP_007433870.1| - 1.8e-05 24.7 0.0 0.24 11.4 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|449066788|ref|YP_007433870.1| - 1.9e-05 23.9 0.0 0.24 10.5 0.0 3.6 3 1 0 3 3 3 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|449066788|ref|YP_007433870.1| - 3.4e-05 23.4 0.0 0.36 10.3 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|449066788|ref|YP_007433870.1| - 6.7e-05 22.9 0.9 0.63 9.9 0.1 3.5 3 1 1 4 4 4 2 NACHT domain AAA_25 PF13481.6 gi|449066788|ref|YP_007433870.1| - 0.00013 21.7 5.9 0.13 11.9 0.3 4.0 2 2 1 3 3 3 2 AAA domain NB-ARC PF00931.22 gi|449066788|ref|YP_007433870.1| - 0.00016 21.0 0.0 0.27 10.4 0.0 3.3 4 0 0 4 4 4 1 NB-ARC domain ATPase PF06745.13 gi|449066788|ref|YP_007433870.1| - 0.00022 20.6 0.9 3.6 6.9 0.0 4.2 4 0 0 4 4 4 0 KaiC Bac_DnaA PF00308.18 gi|449066788|ref|YP_007433870.1| - 0.00024 21.0 0.0 0.053 13.4 0.0 3.0 2 2 0 2 2 2 1 Bacterial dnaA protein Parvo_NS1 PF01057.17 gi|449066788|ref|YP_007433870.1| - 0.00057 19.1 0.1 0.99 8.4 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|449066788|ref|YP_007433870.1| - 0.00057 20.3 0.1 1.4 9.4 0.0 3.1 3 0 0 3 3 2 1 AAA domain AFG1_ATPase PF03969.16 gi|449066788|ref|YP_007433870.1| - 0.00089 18.2 0.0 1.3 7.8 0.0 2.7 2 1 0 2 2 2 2 AFG1-like ATPase PhoH PF02562.16 gi|449066788|ref|YP_007433870.1| - 0.0011 18.5 0.1 0.31 10.5 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_19 PF13245.6 gi|449066788|ref|YP_007433870.1| - 0.0025 18.2 0.2 2.7 8.3 0.0 3.1 2 1 1 3 3 3 1 AAA domain Guanylate_kin PF00625.21 gi|449066788|ref|YP_007433870.1| - 0.0036 17.0 0.2 16 5.2 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase TniB PF05621.11 gi|449066788|ref|YP_007433870.1| - 0.0066 15.9 0.0 3.4 7.1 0.0 3.1 4 0 0 4 4 2 0 Bacterial TniB protein AAA_30 PF13604.6 gi|449066788|ref|YP_007433870.1| - 0.0096 15.7 0.1 2.5 7.8 0.0 2.8 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|449066788|ref|YP_007433870.1| - 0.011 15.7 3.0 4 7.3 0.0 4.1 3 1 1 4 4 3 0 NTPase Viral_helicase1 PF01443.18 gi|449066788|ref|YP_007433870.1| - 0.019 14.7 0.0 0.86 9.3 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|449066788|ref|YP_007433870.1| - 0.02 14.8 0.0 6.4 6.7 0.0 2.9 2 1 0 2 2 2 0 Rad17 P-loop domain PduV-EutP PF10662.9 gi|449066788|ref|YP_007433870.1| - 0.029 14.1 0.0 11 5.8 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_11 PF13086.6 gi|449066788|ref|YP_007433870.1| - 0.035 13.9 0.0 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain IPT PF01745.16 gi|449066788|ref|YP_007433870.1| - 0.039 13.3 0.2 1.5 8.2 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Sigma54_activ_2 PF14532.6 gi|449066788|ref|YP_007433870.1| - 0.041 14.0 0.0 9.3 6.4 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.25 gi|449066788|ref|YP_007433870.1| - 0.042 13.5 0.0 1.9 8.1 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|449066788|ref|YP_007433870.1| - 0.05 13.3 0.0 7.9 6.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF2075 PF09848.9 gi|449066788|ref|YP_007433870.1| - 0.051 12.8 0.0 9.8 5.3 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Roc PF08477.13 gi|449066788|ref|YP_007433870.1| - 0.096 12.9 0.0 14 5.9 0.0 2.9 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Cytidylate_kin PF02224.18 gi|449066788|ref|YP_007433870.1| - 0.12 12.1 0.2 6.5 6.4 0.0 2.8 3 0 0 3 3 2 0 Cytidylate kinase ResIII PF04851.15 gi|449066788|ref|YP_007433870.1| - 0.15 12.1 0.0 12 5.9 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit UFD1 PF03152.14 gi|449066788|ref|YP_007433870.1| - 0.16 11.5 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 SAS-6_N PF16531.5 gi|449066789|ref|YP_007433871.1| - 0.057 14.0 0.0 0.07 13.7 0.0 1.2 1 0 0 1 1 1 0 Centriolar protein SAS N-terminal EAP30 PF04157.16 gi|449066789|ref|YP_007433871.1| - 0.12 11.7 0.1 0.12 11.6 0.1 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family XPG_I PF00867.18 gi|449066790|ref|YP_007433872.1| - 2.8e-27 94.9 0.1 9.2e-27 93.2 0.0 1.9 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|449066790|ref|YP_007433872.1| - 2.2e-18 66.6 0.0 5.2e-18 65.4 0.0 1.7 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|449066790|ref|YP_007433872.1| - 9.1e-07 29.4 0.5 9.1e-07 29.4 0.5 2.4 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|449066790|ref|YP_007433872.1| - 0.03 14.9 0.1 0.13 12.9 0.1 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF3231 PF11553.8 gi|449066790|ref|YP_007433872.1| - 0.049 13.3 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) 5_3_exonuc_N PF02739.16 gi|449066790|ref|YP_007433872.1| - 0.069 13.1 0.0 0.24 11.3 0.0 1.8 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain SMBP PF16785.5 gi|449066790|ref|YP_007433872.1| - 0.086 13.1 1.4 0.82 9.9 0.1 2.3 2 0 0 2 2 2 0 Small metal-binding protein PEP-utilisers_N PF05524.13 gi|449066790|ref|YP_007433872.1| - 0.52 10.5 3.5 3.9 7.7 0.2 2.6 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal COG5 PF10392.9 gi|449066790|ref|YP_007433872.1| - 0.97 9.6 5.6 0.18 12.0 1.0 2.1 3 0 0 3 3 3 0 Golgi transport complex subunit 5 NAD_binding_7 PF13241.6 gi|449066791|ref|YP_007433873.1| - 1.9e-25 89.3 0.0 2.6e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|449066791|ref|YP_007433873.1| - 1.1e-05 25.7 0.0 1.8e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain Ribosomal_S9 PF00380.19 gi|449066791|ref|YP_007433873.1| - 0.022 15.3 0.0 0.04 14.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S9/S16 AlaDh_PNT_C PF01262.21 gi|449066791|ref|YP_007433873.1| - 0.036 13.3 0.0 0.084 12.2 0.0 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.22 gi|449066791|ref|YP_007433873.1| - 0.11 13.3 0.0 0.17 12.7 0.0 1.2 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold GlutR_N PF05201.15 gi|449066792|ref|YP_007433874.1| - 1.4e-32 112.5 0.1 2.9e-32 111.4 0.1 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|449066792|ref|YP_007433874.1| - 1.3e-15 57.7 1.4 3.1e-15 56.5 0.1 2.2 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|449066792|ref|YP_007433874.1| - 2.2e-15 56.9 1.2 4e-15 56.0 1.2 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|449066792|ref|YP_007433874.1| - 1.5e-07 31.9 0.0 5e-07 30.2 0.0 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.21 gi|449066792|ref|YP_007433874.1| - 6.7e-05 22.4 0.1 0.00012 21.5 0.1 1.3 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|449066792|ref|YP_007433874.1| - 0.00087 19.6 0.0 0.0025 18.0 0.0 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|449066792|ref|YP_007433874.1| - 0.0014 18.8 0.0 0.0031 17.7 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|449066792|ref|YP_007433874.1| - 0.0016 19.3 0.0 0.0036 18.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Ldh_1_N PF00056.23 gi|449066792|ref|YP_007433874.1| - 0.002 18.3 0.0 0.0037 17.4 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|449066792|ref|YP_007433874.1| - 0.0041 16.5 0.0 0.0075 15.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|449066792|ref|YP_007433874.1| - 0.0049 17.1 0.0 0.014 15.7 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|449066792|ref|YP_007433874.1| - 0.0053 16.4 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|449066792|ref|YP_007433874.1| - 0.011 16.1 0.0 0.04 14.4 0.0 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|449066792|ref|YP_007433874.1| - 0.017 15.1 0.0 0.048 13.6 0.0 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PglD_N PF17836.1 gi|449066792|ref|YP_007433874.1| - 0.026 15.1 0.1 0.23 12.1 0.0 2.6 2 0 0 2 2 2 0 PglD N-terminal domain DapB_N PF01113.20 gi|449066792|ref|YP_007433874.1| - 0.074 13.2 0.0 0.22 11.6 0.0 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus IlvN PF07991.12 gi|449066792|ref|YP_007433874.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALAD PF00490.21 gi|449066793|ref|YP_007433875.1| - 7.1e-140 465.7 0.9 8e-140 465.5 0.9 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase ComA PF02679.15 gi|449066793|ref|YP_007433875.1| - 0.035 13.6 0.0 2.5 7.5 0.0 2.4 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Aminotran_3 PF00202.21 gi|449066794|ref|YP_007433876.1| - 2e-69 234.2 0.1 2.3e-69 234.0 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|449066794|ref|YP_007433876.1| - 3.1e-06 26.6 0.0 4.1e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Porphobil_deam PF01379.20 gi|449066795|ref|YP_007433877.1| - 2e-59 200.5 0.2 2.6e-59 200.2 0.2 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|449066795|ref|YP_007433877.1| - 1e-08 35.4 0.0 2.7e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain HEM4 PF02602.15 gi|449066796|ref|YP_007433878.1| - 1.5e-16 60.5 0.0 1.9e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Phosphodiest PF01663.22 gi|449066798|ref|YP_007433880.1| - 1.7e-33 116.7 0.1 4.1e-32 112.2 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|449066798|ref|YP_007433880.1| - 0.002 17.6 0.0 0.021 14.2 0.0 2.5 3 0 0 3 3 3 1 Sulfatase PglZ PF08665.12 gi|449066798|ref|YP_007433880.1| - 0.0047 17.0 0.0 0.029 14.5 0.0 2.1 2 0 0 2 2 2 1 PglZ domain Peptidase_M23 PF01551.22 gi|449066798|ref|YP_007433880.1| - 0.069 13.4 0.0 0.23 11.7 0.0 1.8 2 0 0 2 2 2 0 Peptidase family M23 Fer2_BFD PF04324.15 gi|449066799|ref|YP_007433881.1| - 7.9e-08 32.5 0.5 1.7e-07 31.5 0.5 1.6 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|449066799|ref|YP_007433881.1| - 2.3e-07 30.3 0.2 9.1e-07 28.4 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SO_alpha_A3 PF17806.1 gi|449066799|ref|YP_007433881.1| - 5.3e-05 23.5 0.0 0.00011 22.5 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Pyr_redox_3 PF13738.6 gi|449066799|ref|YP_007433881.1| - 0.013 14.7 2.0 0.16 11.2 0.0 3.1 2 2 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ID PF18543.1 gi|449066799|ref|YP_007433881.1| - 0.11 12.5 0.2 4.5 7.4 0.0 2.8 2 0 0 2 2 2 0 Intracellular delivery domain DAO PF01266.24 gi|449066800|ref|YP_007433882.1| - 3.2e-40 138.8 0.0 3.6e-40 138.6 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|449066800|ref|YP_007433882.1| - 2.5e-06 26.8 0.4 8.3e-05 21.8 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|449066800|ref|YP_007433882.1| - 8.6e-05 21.9 0.1 0.00017 20.9 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|449066800|ref|YP_007433882.1| - 0.00023 20.5 0.0 0.39 9.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|449066800|ref|YP_007433882.1| - 0.00046 20.4 0.0 0.0015 18.8 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|449066800|ref|YP_007433882.1| - 0.0011 18.3 0.2 0.002 17.4 0.2 1.4 1 0 0 1 1 1 1 Thi4 family Amino_oxidase PF01593.24 gi|449066800|ref|YP_007433882.1| - 0.0043 16.4 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|449066800|ref|YP_007433882.1| - 0.0065 16.5 0.0 0.094 12.7 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|449066800|ref|YP_007433882.1| - 0.007 15.7 0.1 0.011 15.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|449066800|ref|YP_007433882.1| - 0.0076 15.4 0.0 0.36 9.8 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|449066800|ref|YP_007433882.1| - 0.059 12.4 0.0 0.15 11.1 0.0 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|449066800|ref|YP_007433882.1| - 0.075 13.6 0.0 0.38 11.4 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|449066800|ref|YP_007433882.1| - 0.13 12.3 0.3 0.28 11.2 0.1 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase DUF3732 PF12532.8 gi|449066800|ref|YP_007433882.1| - 0.16 11.5 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3732) ApbA PF02558.16 gi|449066800|ref|YP_007433882.1| - 0.17 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lactamase_B_2 PF12706.7 gi|449066801|ref|YP_007433883.1| - 1.6e-05 24.6 0.0 3.2e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Methyltransf_24 PF13578.6 gi|449066801|ref|YP_007433883.1| - 0.13 13.3 0.1 0.79 10.8 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Uteroglobin PF01099.17 gi|449066801|ref|YP_007433883.1| - 0.17 12.2 0.0 23 5.4 0.0 2.7 3 0 0 3 3 3 0 Uteroglobin family DNA_ligase_A_M PF01068.21 gi|449066802|ref|YP_007433884.1| - 5.1e-64 215.7 0.6 1.1e-63 214.6 0.6 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|449066802|ref|YP_007433884.1| - 4.2e-39 134.6 1.6 8.3e-39 133.7 1.6 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|449066802|ref|YP_007433884.1| - 9.3e-27 93.5 0.0 2.1e-26 92.4 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|449066802|ref|YP_007433884.1| - 1e-07 32.4 1.2 1.7e-07 31.7 1.2 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|449066802|ref|YP_007433884.1| - 0.034 14.2 0.2 2.4 8.3 0.0 3.0 3 0 0 3 3 3 0 DNA ligase OB-like domain TBPIP PF07106.13 gi|449066802|ref|YP_007433884.1| - 0.095 12.7 0.9 3 7.9 0.1 3.1 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain dUTPase PF00692.19 gi|449066803|ref|YP_007433885.1| - 2.2e-27 95.3 0.0 2.8e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|449066803|ref|YP_007433885.1| - 1.9e-08 33.5 0.0 7.3e-08 31.6 0.0 2.0 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) RHH_1 PF01402.21 gi|449066804|ref|YP_007433886.1| - 0.021 14.8 0.2 0.021 14.8 0.2 2.6 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN_6 PF17146.4 gi|449066804|ref|YP_007433886.1| - 0.044 14.3 2.8 0.094 13.2 2.1 2.0 1 1 0 1 1 1 0 PIN domain of ribonuclease Nudix_hydro PF18290.1 gi|449066804|ref|YP_007433886.1| - 0.047 13.7 0.2 0.33 11.0 0.2 2.4 2 1 1 3 3 3 0 Nudix hydrolase domain Uds1 PF15456.6 gi|449066804|ref|YP_007433886.1| - 0.053 13.7 12.7 0.28 11.4 12.7 2.1 1 1 0 1 1 1 0 Up-regulated During Septation YabA PF06156.13 gi|449066804|ref|YP_007433886.1| - 0.2 12.3 9.5 0.16 12.7 3.4 2.4 2 0 0 2 2 2 0 Initiation control protein YabA Muted PF14942.6 gi|449066804|ref|YP_007433886.1| - 0.25 11.7 15.2 0.039 14.3 7.0 2.3 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Matrilin_ccoil PF10393.9 gi|449066804|ref|YP_007433886.1| - 0.43 10.5 4.7 0.27 11.1 1.1 2.6 2 1 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF4634 PF15465.6 gi|449066804|ref|YP_007433886.1| - 0.57 10.5 2.6 0.71 10.2 1.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4634) Vfa1 PF08432.10 gi|449066804|ref|YP_007433886.1| - 0.7 10.2 13.3 1.3 9.3 13.3 1.5 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF4407 PF14362.6 gi|449066804|ref|YP_007433886.1| - 0.72 9.2 7.7 0.92 8.8 7.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Ndc1_Nup PF09531.10 gi|449066804|ref|YP_007433886.1| - 0.86 8.2 3.8 1.1 7.8 3.8 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup PspB PF06667.12 gi|449066804|ref|YP_007433886.1| - 0.94 9.6 3.8 3.9 7.6 0.2 3.1 3 0 0 3 3 3 0 Phage shock protein B Ferritin-like PF12902.7 gi|449066804|ref|YP_007433886.1| - 1.1 9.1 7.2 0.37 10.6 3.6 1.9 1 1 1 2 2 2 0 Ferritin-like EST1 PF10374.9 gi|449066804|ref|YP_007433886.1| - 1.3 9.7 5.8 4.3 8.0 0.1 2.2 2 0 0 2 2 2 0 Telomerase activating protein Est1 TSC22 PF01166.18 gi|449066804|ref|YP_007433886.1| - 2 8.8 8.6 0.14 12.5 1.3 2.8 3 1 0 3 3 3 0 TSC-22/dip/bun family p25-alpha PF05517.12 gi|449066804|ref|YP_007433886.1| - 2.7 8.1 9.9 0.34 11.1 2.7 2.3 1 1 1 2 2 2 0 p25-alpha Sas10_Utp3 PF04000.15 gi|449066804|ref|YP_007433886.1| - 3.1 8.5 7.6 1.7 9.3 3.0 2.4 2 0 0 2 2 2 0 Sas10/Utp3/C1D family Rtf2 PF04641.12 gi|449066804|ref|YP_007433886.1| - 4.3 6.6 17.2 1.5 8.1 8.9 2.2 1 1 1 2 2 2 0 Rtf2 RING-finger Fib_alpha PF08702.10 gi|449066804|ref|YP_007433886.1| - 9.7 6.4 12.5 2.3 8.4 6.2 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Thioredoxin_3 PF13192.6 gi|449066805|ref|YP_007433887.1| - 1.2e-27 95.7 1.3 8.2e-15 54.6 1.1 2.3 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|449066805|ref|YP_007433887.1| - 6.3e-05 22.9 0.7 0.0063 16.5 0.3 2.3 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|449066805|ref|YP_007433887.1| - 0.00011 22.6 6.4 0.029 14.8 0.3 3.5 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|449066805|ref|YP_007433887.1| - 0.00048 20.3 5.3 0.059 13.6 1.6 3.2 2 2 0 2 2 2 2 Glutaredoxin Thioredoxin_7 PF13899.6 gi|449066805|ref|YP_007433887.1| - 0.011 15.9 0.4 0.25 11.6 0.1 2.5 2 0 0 2 2 2 0 Thioredoxin-like Thioredoxin_8 PF13905.6 gi|449066805|ref|YP_007433887.1| - 0.011 16.0 0.1 9.8 6.6 0.0 3.0 2 1 0 2 2 2 0 Thioredoxin-like OST3_OST6 PF04756.13 gi|449066805|ref|YP_007433887.1| - 0.021 14.2 0.2 0.2 11.0 0.1 1.9 1 1 0 2 2 2 0 OST3 / OST6 family, transporter family DUF2533 PF10752.9 gi|449066805|ref|YP_007433887.1| - 0.041 14.3 0.0 0.14 12.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2533) DSBA PF01323.20 gi|449066805|ref|YP_007433887.1| - 0.19 11.5 1.1 2.7 7.7 0.0 2.7 2 2 0 3 3 3 0 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|449066805|ref|YP_007433887.1| - 0.33 11.1 8.0 3.3 7.8 0.0 3.6 2 2 2 4 4 4 0 Thioredoxin AMMECR1 PF01871.17 gi|449066806|ref|YP_007433888.1| - 4.2e-48 163.1 0.0 4.9e-48 162.9 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 zf-NOSIP PF15906.5 gi|449066806|ref|YP_007433888.1| - 0.097 12.8 0.0 0.36 11.0 0.0 1.9 2 0 0 2 2 2 0 Zinc-finger of nitric oxide synthase-interacting protein Mut7-C PF01927.16 gi|449066807|ref|YP_007433889.1| - 8e-35 120.1 7.2 3.9e-32 111.4 7.2 2.0 1 1 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|449066807|ref|YP_007433889.1| - 7.6e-05 22.4 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) IBR PF01485.21 gi|449066807|ref|YP_007433889.1| - 0.0023 18.1 1.9 0.0045 17.2 1.9 1.4 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|449066807|ref|YP_007433889.1| - 0.009 15.9 0.7 0.021 14.7 0.4 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.10 gi|449066807|ref|YP_007433889.1| - 0.3 10.8 6.6 0.25 11.1 5.7 1.4 1 1 0 1 1 1 0 Replication factor-A C terminal domain PHD_2 PF13831.6 gi|449066807|ref|YP_007433889.1| - 1.5 8.5 8.1 0.22 11.1 3.6 2.0 2 0 0 2 2 2 0 PHD-finger zf-ACC PF17848.1 gi|449066807|ref|YP_007433889.1| - 2.6 8.2 8.6 11 6.2 0.3 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain COPI_assoc PF08507.10 gi|449066808|ref|YP_007433890.1| - 0.27 11.3 10.1 0.42 10.7 10.1 1.3 1 1 0 1 1 1 0 COPI associated protein DUF5379 PF17350.2 gi|449066808|ref|YP_007433890.1| - 0.38 11.0 7.9 1.3 9.4 7.9 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5379) FbpA PF05833.11 gi|449066809|ref|YP_007433891.1| - 2.7e-30 105.6 21.8 5.2e-30 104.6 21.8 1.4 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|449066809|ref|YP_007433891.1| - 3.8e-25 88.7 0.4 1.2e-24 87.0 0.0 2.0 2 0 0 2 2 2 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|449066809|ref|YP_007433891.1| - 9.4e-05 22.6 0.0 0.00037 20.7 0.0 2.0 1 0 0 1 1 1 1 NFACT protein RNA binding domain Phage_ABA_S PF18066.1 gi|449066809|ref|YP_007433891.1| - 0.0032 18.1 1.2 0.015 16.0 0.1 2.3 1 1 1 2 2 2 1 Phage ABA sandwich domain DNA_primase_S PF01896.19 gi|449066809|ref|YP_007433891.1| - 0.038 14.0 0.1 0.081 13.0 0.1 1.6 1 0 0 1 1 1 0 DNA primase small subunit P22_AR_C PF10548.9 gi|449066809|ref|YP_007433891.1| - 0.051 13.7 0.9 0.15 12.3 0.1 2.2 3 0 0 3 3 2 0 P22AR C-terminal domain HetR_C PF18460.1 gi|449066809|ref|YP_007433891.1| - 0.18 11.8 4.5 0.3 11.0 0.2 3.1 3 0 0 3 3 3 0 Heterocyst differentiation regulator C-terminal Hood domain Apolipoprotein PF01442.18 gi|449066809|ref|YP_007433891.1| - 0.47 10.3 6.5 2.7 7.8 0.9 2.3 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain MIP-T3_C PF17749.1 gi|449066809|ref|YP_007433891.1| - 0.47 10.4 11.5 0.33 10.9 0.5 2.6 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Occludin_ELL PF07303.13 gi|449066809|ref|YP_007433891.1| - 0.58 10.9 12.2 0.17 12.6 3.0 2.9 2 0 0 2 2 2 0 Occludin homology domain PspA_IM30 PF04012.12 gi|449066809|ref|YP_007433891.1| - 0.79 9.3 13.4 0.41 10.2 2.7 2.4 2 0 0 2 2 2 0 PspA/IM30 family Goodbye PF17109.5 gi|449066809|ref|YP_007433891.1| - 1.2 9.6 5.3 1.4 9.4 2.0 2.6 3 0 0 3 3 3 0 fungal STAND N-terminal Goodbye domain Ax_dynein_light PF10211.9 gi|449066809|ref|YP_007433891.1| - 2.1 8.3 17.8 0.17 11.8 6.8 2.8 3 0 0 3 3 2 0 Axonemal dynein light chain TSC22 PF01166.18 gi|449066809|ref|YP_007433891.1| - 3 8.2 10.9 53 4.2 1.0 3.9 3 0 0 3 3 3 0 TSC-22/dip/bun family DUF4795 PF16043.5 gi|449066809|ref|YP_007433891.1| - 3.3 7.3 13.0 40 3.7 11.7 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4795) UPF0449 PF15136.6 gi|449066809|ref|YP_007433891.1| - 3.8 8.0 11.9 5.3 7.6 1.9 2.6 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 YtxH PF12732.7 gi|449066809|ref|YP_007433891.1| - 4.5 7.9 9.4 8.8 6.9 1.6 3.1 2 1 0 2 2 2 0 YtxH-like protein DUF1664 PF07889.12 gi|449066809|ref|YP_007433891.1| - 6.9 6.7 10.1 3.2 7.8 4.8 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) RIO1 PF01163.22 gi|449066810|ref|YP_007433892.1| - 7e-35 120.3 0.1 9.7e-35 119.9 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|449066810|ref|YP_007433892.1| - 5.6e-05 23.3 0.1 0.00011 22.3 0.1 1.6 1 0 0 1 1 1 1 Rio2, N-terminal HTH_5 PF01022.20 gi|449066810|ref|YP_007433892.1| - 0.0019 18.1 0.8 0.0051 16.7 0.5 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Pkinase_fungal PF17667.1 gi|449066810|ref|YP_007433892.1| - 0.0025 16.6 0.0 0.0031 16.4 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Pkinase PF00069.25 gi|449066810|ref|YP_007433892.1| - 0.0034 16.8 0.2 0.0085 15.5 0.2 1.7 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|449066810|ref|YP_007433892.1| - 0.013 15.4 0.0 0.026 14.5 0.0 1.4 1 1 0 1 1 1 0 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|449066810|ref|YP_007433892.1| - 0.015 14.9 0.3 0.42 10.2 0.3 2.1 1 1 1 2 2 2 0 Choline/ethanolamine kinase UPF0137 PF03677.13 gi|449066810|ref|YP_007433892.1| - 0.018 14.8 0.7 0.037 13.8 0.1 1.8 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0137) HTH_Mga PF08280.11 gi|449066810|ref|YP_007433892.1| - 0.022 14.8 1.5 0.087 12.9 0.5 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF460 PF04312.13 gi|449066811|ref|YP_007433893.1| - 9.2e-51 171.3 0.4 1.9e-50 170.3 0.4 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) V-SNARE PF05008.15 gi|449066811|ref|YP_007433893.1| - 0.16 12.4 11.9 3.8 8.0 0.1 4.7 4 0 0 4 4 4 0 Vesicle transport v-SNARE protein N-terminus Nab2 PF11517.8 gi|449066811|ref|YP_007433893.1| - 0.16 12.3 3.9 0.13 12.6 1.4 2.2 2 0 0 2 2 2 0 Nuclear abundant poly(A) RNA-bind protein 2 (Nab2) SlyX PF04102.12 gi|449066811|ref|YP_007433893.1| - 0.17 12.5 8.0 0.82 10.3 1.9 2.7 2 0 0 2 2 2 0 SlyX YabA PF06156.13 gi|449066811|ref|YP_007433893.1| - 0.2 12.3 10.7 5.2 7.8 6.1 3.2 2 1 0 2 2 2 0 Initiation control protein YabA TPR_MLP1_2 PF07926.12 gi|449066811|ref|YP_007433893.1| - 1.2 9.3 10.5 0.28 11.2 5.1 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4258 PF14076.6 gi|449066811|ref|YP_007433893.1| - 1.2 9.6 5.8 2.2 8.7 0.0 3.4 4 1 0 4 4 4 0 Domain of unknown function (DUF4258) BRE1 PF08647.11 gi|449066811|ref|YP_007433893.1| - 2.7 8.1 17.0 0.67 10.1 12.7 2.3 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF5601 PF18151.1 gi|449066811|ref|YP_007433893.1| - 2.8 8.3 6.1 1.3 9.4 1.2 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF5601) Spc29 PF17082.5 gi|449066811|ref|YP_007433893.1| - 4.4 7.1 12.0 0.72 9.6 5.5 2.2 1 1 1 2 2 2 0 Spindle Pole Component 29 AdoMet_Synthase PF01941.19 gi|449066812|ref|YP_007433894.1| - 4.9e-168 559.0 4.6 5.5e-168 558.8 4.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.22 gi|449066813|ref|YP_007433895.1| - 3.4e-22 77.9 0.2 4e-22 77.7 0.2 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|449066813|ref|YP_007433895.1| - 0.096 12.8 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain HTH_5 PF01022.20 gi|449066814|ref|YP_007433896.1| - 8.9e-13 47.9 0.1 1.6e-12 47.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|449066814|ref|YP_007433896.1| - 3.7e-09 36.5 0.0 5.2e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|449066814|ref|YP_007433896.1| - 1.5e-07 31.2 0.0 2.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|449066814|ref|YP_007433896.1| - 1.6e-07 31.2 0.1 2.6e-07 30.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|449066814|ref|YP_007433896.1| - 3.5e-06 27.1 0.1 5.3e-06 26.5 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|449066814|ref|YP_007433896.1| - 4e-06 26.3 0.0 6.5e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|449066814|ref|YP_007433896.1| - 2.2e-05 24.2 0.1 3.9e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|449066814|ref|YP_007433896.1| - 3.6e-05 23.7 0.1 8.9e-05 22.4 0.1 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|449066814|ref|YP_007433896.1| - 0.0034 17.3 0.1 0.0052 16.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain DprA_WH PF17782.1 gi|449066814|ref|YP_007433896.1| - 0.0041 17.2 0.0 0.0058 16.7 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain DUF742 PF05331.11 gi|449066814|ref|YP_007433896.1| - 0.0054 16.5 0.0 0.0063 16.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF742) Fe_dep_repress PF01325.19 gi|449066814|ref|YP_007433896.1| - 0.0074 16.5 0.2 0.012 15.7 0.0 1.5 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|449066814|ref|YP_007433896.1| - 0.0081 16.6 0.0 0.013 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|449066814|ref|YP_007433896.1| - 0.0086 15.9 0.0 0.013 15.3 0.0 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|449066814|ref|YP_007433896.1| - 0.036 14.2 0.3 0.047 13.8 0.3 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|449066814|ref|YP_007433896.1| - 0.038 14.4 0.2 0.05 13.9 0.2 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR PF03551.14 gi|449066814|ref|YP_007433896.1| - 0.044 13.7 0.0 0.091 12.7 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|449066814|ref|YP_007433896.1| - 0.052 13.3 0.2 0.095 12.4 0.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) TFIIE_alpha PF02002.17 gi|449066814|ref|YP_007433896.1| - 0.055 13.3 0.3 0.1 12.4 0.3 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.21 gi|449066814|ref|YP_007433896.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4315 PF14193.6 gi|449066814|ref|YP_007433896.1| - 0.1 12.6 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) Cdc6_C PF09079.11 gi|449066814|ref|YP_007433896.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.6 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_1 PF00126.27 gi|449066814|ref|YP_007433896.1| - 0.17 11.8 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family CTP_synth_N PF06418.14 gi|449066815|ref|YP_007433897.1| - 6.3e-119 396.1 2.8 8.8e-119 395.7 2.8 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|449066815|ref|YP_007433897.1| - 6.5e-54 182.6 0.0 1.2e-53 181.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449066815|ref|YP_007433897.1| - 3.9e-09 36.6 0.0 9.5e-09 35.3 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|449066815|ref|YP_007433897.1| - 1.7e-05 24.9 0.0 3.7e-05 23.8 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|449066815|ref|YP_007433897.1| - 0.063 12.4 1.6 1.2 8.2 0.3 2.4 1 1 1 2 2 2 0 Anion-transporting ATPase MeaB PF03308.16 gi|449066815|ref|YP_007433897.1| - 0.14 11.2 0.2 0.25 10.3 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB OMPdecase PF00215.24 gi|449066816|ref|YP_007433898.1| - 1.2e-17 64.2 4.6 3.1e-17 63.0 4.6 1.6 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|449066816|ref|YP_007433898.1| - 0.0023 17.7 1.5 0.005 16.6 1.0 1.9 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF1128 PF06569.11 gi|449066817|ref|YP_007433899.1| - 0.34 10.9 3.6 4 7.5 0.0 3.1 4 1 1 5 5 5 0 Protein of unknown function (DUF1128) Spo12 PF05032.12 gi|449066817|ref|YP_007433899.1| - 1 9.4 3.1 1.3 9.0 0.0 2.7 3 0 0 3 3 3 0 Spo12 family DUF2153 PF09921.9 gi|449066818|ref|YP_007433900.1| - 3.6e-54 181.8 6.6 4.4e-54 181.6 6.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF4248 PF14053.6 gi|449066818|ref|YP_007433900.1| - 0.064 13.3 2.2 0.96 9.5 0.1 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4248) FAD_SOX PF18371.1 gi|449066818|ref|YP_007433900.1| - 0.074 13.4 3.2 1.6 9.1 0.5 2.1 1 1 1 2 2 2 0 Flavin adenine dinucleotide (FAD)-dependent sulfhydryl oxidase bMG1 PF17970.1 gi|449066818|ref|YP_007433900.1| - 0.086 12.9 0.1 0.13 12.4 0.1 1.4 1 1 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG1 domain OSCP PF00213.18 gi|449066818|ref|YP_007433900.1| - 0.089 12.9 0.2 0.21 11.7 0.0 1.7 1 1 1 2 2 2 0 ATP synthase delta (OSCP) subunit Trm112p PF03966.16 gi|449066819|ref|YP_007433901.1| - 7.1e-17 61.8 2.9 1.2e-16 61.0 2.9 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-UDP PF14569.6 gi|449066819|ref|YP_007433901.1| - 0.017 15.2 1.0 0.017 15.2 1.0 2.1 1 1 1 2 2 2 0 Zinc-binding RING-finger zf-RING_7 PF02591.15 gi|449066819|ref|YP_007433901.1| - 0.4 10.9 3.4 1.1 9.5 0.0 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain Prok-RING_4 PF14447.6 gi|449066819|ref|YP_007433901.1| - 0.42 10.5 6.2 6.7 6.7 1.5 2.6 2 1 0 2 2 2 0 Prokaryotic RING finger family 4 Sgf11 PF08209.11 gi|449066819|ref|YP_007433901.1| - 1.8 8.2 4.7 1.9 8.1 0.1 2.5 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.6 gi|449066819|ref|YP_007433901.1| - 2.5 7.7 8.8 5 6.7 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain PADR1 PF08063.12 gi|449066819|ref|YP_007433901.1| - 2.5 8.0 7.4 4.6 7.1 0.1 3.0 2 1 1 3 3 3 0 PADR1 (NUC008) domain Cys_rich_KTR PF14205.6 gi|449066819|ref|YP_007433901.1| - 2.5 8.0 7.4 3.3 7.6 1.8 2.9 2 1 1 3 3 3 0 Cysteine-rich KTR PGM_PMM_I PF02878.16 gi|449066820|ref|YP_007433902.1| - 2.5e-42 143.9 0.0 4.9e-42 142.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|449066820|ref|YP_007433902.1| - 1.6e-22 80.0 0.0 3.7e-22 78.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|449066820|ref|YP_007433902.1| - 9.1e-19 67.7 0.0 1.6e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|449066820|ref|YP_007433902.1| - 7.4e-10 38.9 0.0 2.2e-09 37.4 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Glycos_transf_1 PF00534.20 gi|449066821|ref|YP_007433903.1| - 1.2e-27 96.5 0.3 1.9e-27 95.9 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|449066821|ref|YP_007433903.1| - 1.8e-21 76.9 0.1 8e-21 74.8 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|449066821|ref|YP_007433903.1| - 2.5e-15 57.1 0.1 5.7e-15 55.9 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|449066821|ref|YP_007433903.1| - 2e-13 51.1 0.0 1.1e-11 45.4 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|449066821|ref|YP_007433903.1| - 0.00055 20.3 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 SH3_18 PF18354.1 gi|449066821|ref|YP_007433903.1| - 0.11 12.5 0.9 22 5.1 0.4 2.9 3 1 0 3 3 3 0 CarS bacterial SH3 domain MTS PF05175.14 gi|449066822|ref|YP_007433904.1| - 9.8e-33 113.1 0.0 1.1e-32 112.9 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|449066822|ref|YP_007433904.1| - 3.5e-09 36.8 0.0 5.7e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|449066822|ref|YP_007433904.1| - 1.4e-08 34.6 0.0 2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|449066822|ref|YP_007433904.1| - 1.9e-07 30.8 0.0 2.2e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.15 gi|449066822|ref|YP_007433904.1| - 4.6e-07 29.3 0.0 6.3e-07 28.9 0.0 1.3 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.6 gi|449066822|ref|YP_007433904.1| - 5.2e-07 30.3 0.0 7.4e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|449066822|ref|YP_007433904.1| - 1.3e-06 28.1 0.1 1.4e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|449066822|ref|YP_007433904.1| - 3.3e-05 23.6 0.0 3.8e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|449066822|ref|YP_007433904.1| - 7.6e-05 22.5 0.1 8.6e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|449066822|ref|YP_007433904.1| - 0.00047 19.9 0.0 0.00074 19.3 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|449066822|ref|YP_007433904.1| - 0.00088 20.0 0.0 0.0012 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|449066822|ref|YP_007433904.1| - 0.00088 18.6 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain rRNA_methylase PF06962.12 gi|449066822|ref|YP_007433904.1| - 0.00097 19.1 0.1 1.3 9.0 0.0 2.1 2 0 0 2 2 2 2 Putative rRNA methylase Methyltransf_4 PF02390.17 gi|449066822|ref|YP_007433904.1| - 0.002 17.6 0.0 0.0033 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase TrmK PF04816.12 gi|449066822|ref|YP_007433904.1| - 0.0023 17.5 0.0 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_11 PF08241.12 gi|449066822|ref|YP_007433904.1| - 0.0067 17.0 0.0 0.011 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|449066822|ref|YP_007433904.1| - 0.013 15.2 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TehB PF03848.14 gi|449066822|ref|YP_007433904.1| - 0.025 14.0 0.3 0.045 13.2 0.1 1.5 2 0 0 2 2 2 0 Tellurite resistance protein TehB CMAS PF02353.20 gi|449066822|ref|YP_007433904.1| - 0.043 13.1 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|449066822|ref|YP_007433904.1| - 0.044 13.6 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|449066822|ref|YP_007433904.1| - 0.22 11.5 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TruB_C_2 PF16198.5 gi|449066823|ref|YP_007433905.1| - 1.1e-20 73.5 0.1 2.1e-20 72.6 0.1 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|449066823|ref|YP_007433905.1| - 2.6e-15 56.2 0.1 6.3e-15 54.9 0.1 1.7 2 0 0 2 2 2 1 PUA domain TruB_N PF01509.18 gi|449066823|ref|YP_007433905.1| - 1.5e-08 35.1 0.1 8.5e-07 29.4 0.1 2.7 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) UPF0113 PF03657.13 gi|449066823|ref|YP_007433905.1| - 7.4e-05 22.9 1.0 0.0079 16.4 0.1 2.5 2 0 0 2 2 2 2 UPF0113 PUA domain DKCLD PF08068.12 gi|449066824|ref|YP_007433906.1| - 8.6e-13 48.1 0.0 1.2e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB_N PF01509.18 gi|449066824|ref|YP_007433906.1| - 0.081 13.3 0.1 0.17 12.2 0.0 1.5 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) KOW PF00467.29 gi|449066825|ref|YP_007433907.1| - 0.00066 19.5 0.4 0.00066 19.5 0.4 1.9 2 1 0 2 2 2 1 KOW motif Ribosomal_L14e PF01929.17 gi|449066825|ref|YP_007433907.1| - 0.0037 17.7 0.1 0.0053 17.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 XisI PF08869.11 gi|449066825|ref|YP_007433907.1| - 0.0083 16.5 0.1 0.01 16.2 0.1 1.1 1 0 0 1 1 1 1 XisI protein DEAD PF00270.29 gi|449066826|ref|YP_007433908.1| - 8.7e-31 107.0 0.0 2.2e-30 105.7 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|449066826|ref|YP_007433908.1| - 5.5e-23 81.4 0.1 1.1e-19 70.8 0.1 3.0 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|449066826|ref|YP_007433908.1| - 6.7e-17 61.9 0.0 1.3e-16 61.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|449066826|ref|YP_007433908.1| - 2.4e-06 27.6 0.0 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|449066826|ref|YP_007433908.1| - 2.7e-05 24.5 0.0 0.0003 21.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain PrpR_N PF06506.11 gi|449066826|ref|YP_007433908.1| - 0.0054 16.3 0.0 0.019 14.5 0.0 2.0 1 0 0 1 1 1 1 Propionate catabolism activator AAA_22 PF13401.6 gi|449066826|ref|YP_007433908.1| - 0.011 15.9 0.4 0.097 12.9 0.4 2.5 1 1 0 1 1 1 0 AAA domain zinc_ribbon_10 PF10058.9 gi|449066826|ref|YP_007433908.1| - 0.25 11.1 1.5 0.58 9.9 1.5 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF87 PF01935.17 gi|449066827|ref|YP_007433909.1| - 1.8e-07 31.5 1.3 2.9e-06 27.5 0.9 2.3 1 1 1 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|449066827|ref|YP_007433909.1| - 1.1e-06 27.8 0.6 0.00015 20.8 0.6 2.4 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.6 gi|449066827|ref|YP_007433909.1| - 0.00016 22.0 0.0 0.86 9.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|449066827|ref|YP_007433909.1| - 0.00024 21.7 0.0 0.00093 19.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|449066827|ref|YP_007433909.1| - 0.0083 16.6 0.1 0.016 15.7 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|449066827|ref|YP_007433909.1| - 0.0097 15.6 0.4 0.019 14.7 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|449066827|ref|YP_007433909.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|449066827|ref|YP_007433909.1| - 0.019 13.9 0.0 1.6 7.5 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF3439 PF11921.8 gi|449066827|ref|YP_007433909.1| - 0.036 14.0 0.1 0.093 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3439) AAA PF00004.29 gi|449066827|ref|YP_007433909.1| - 0.091 13.2 0.1 0.34 11.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Cytochrome-c551 PF10643.9 gi|449066827|ref|YP_007433909.1| - 0.15 11.6 6.5 0.31 10.6 6.5 1.5 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 AAA_16 PF13191.6 gi|449066827|ref|YP_007433909.1| - 0.22 11.9 0.0 0.42 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RNA_pol_Rpo13 PF12136.8 gi|449066828|ref|YP_007433910.1| - 3.7e-18 65.1 3.9 3.7e-18 65.1 3.9 2.7 3 0 0 3 3 3 1 RNA polymerase Rpo13 subunit HTH domain PCNA_C PF02747.15 gi|449066829|ref|YP_007433911.1| - 1.7e-08 34.7 1.2 0.00021 21.5 0.0 3.2 1 1 1 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|449066829|ref|YP_007433911.1| - 1.6e-05 24.6 1.3 3.4e-05 23.5 0.3 2.0 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|449066829|ref|YP_007433911.1| - 0.0027 17.2 1.8 0.0073 15.8 0.6 2.0 1 1 0 2 2 2 1 Rad9 Svf1 PF08622.10 gi|449066829|ref|YP_007433911.1| - 0.11 12.5 0.7 0.16 12.0 0.1 1.6 2 1 0 2 2 2 0 Svf1-like N-terminal lipocalin domain DUF1235 PF06822.12 gi|449066829|ref|YP_007433911.1| - 0.3 10.4 7.6 1.2 8.4 7.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1235) Amidohydro_1 PF01979.20 gi|449066830|ref|YP_007433912.1| - 1.9e-17 63.6 0.0 6.6e-15 55.3 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family TEBP_beta PF07404.11 gi|449066830|ref|YP_007433912.1| - 0.049 13.0 0.1 0.39 10.0 0.0 1.9 2 0 0 2 2 2 0 Telomere-binding protein beta subunit (TEBP beta) GCH_III PF05165.12 gi|449066831|ref|YP_007433913.1| - 2.4e-23 82.7 0.1 1.1e-20 74.0 0.1 2.0 1 1 0 1 1 1 1 GTP cyclohydrolase III DMRL_synthase PF00885.19 gi|449066832|ref|YP_007433914.1| - 2.7e-35 121.2 1.1 3.3e-35 121.0 1.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.6 gi|449066832|ref|YP_007433914.1| - 0.012 15.0 1.3 0.82 8.9 0.3 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily ADSL_C PF10397.9 gi|449066832|ref|YP_007433914.1| - 0.016 15.7 0.0 0.041 14.4 0.0 1.6 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus TM_PBP2_N PF16296.5 gi|449066832|ref|YP_007433914.1| - 0.086 13.0 0.1 0.78 9.9 0.0 2.2 2 1 0 2 2 2 0 N-terminal of TM subunit in PBP-dependent ABC transporters DMRL_synthase PF00885.19 gi|449066833|ref|YP_007433915.1| - 1.6e-10 40.9 0.1 1.9e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DHBP_synthase PF00926.19 gi|449066834|ref|YP_007433916.1| - 5.6e-44 150.0 0.0 6.7e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF2208 PF09973.9 gi|449066836|ref|YP_007433918.1| - 4e-66 223.0 23.9 4.5e-66 222.8 23.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Rer1 PF03248.13 gi|449066836|ref|YP_007433918.1| - 0.0012 18.6 14.8 0.0035 17.1 4.1 2.3 2 0 0 2 2 2 2 Rer1 family PDR_CDR PF06422.12 gi|449066836|ref|YP_007433918.1| - 0.086 12.7 5.0 0.078 12.9 0.9 2.2 2 0 0 2 2 2 0 CDR ABC transporter DPM3 PF08285.11 gi|449066836|ref|YP_007433918.1| - 2.1 8.6 7.8 1.5 9.1 3.0 2.4 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) GATase_3 PF07685.14 gi|449066837|ref|YP_007433919.1| - 1.2e-38 132.7 0.0 1.9e-38 132.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|449066837|ref|YP_007433919.1| - 2.2e-13 50.5 0.0 2.1e-08 34.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|449066837|ref|YP_007433919.1| - 2.2e-10 40.7 0.1 8.8e-10 38.7 0.0 1.9 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain PCNA_N PF00705.18 gi|449066838|ref|YP_007433920.1| - 7e-15 54.9 0.2 2e-14 53.4 0.1 1.8 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|449066838|ref|YP_007433920.1| - 4.1e-12 46.4 0.6 3.9e-10 40.0 0.1 2.2 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|449066838|ref|YP_007433920.1| - 3.3e-10 39.5 0.9 1.2e-05 24.5 0.0 2.1 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|449066838|ref|YP_007433920.1| - 1.2e-07 31.4 0.4 1.7e-07 31.0 0.4 1.2 1 0 0 1 1 1 1 Rad9 PhoU_div PF01865.16 gi|449066838|ref|YP_007433920.1| - 1.6 8.0 8.5 0.4 10.0 3.3 2.1 2 1 0 2 2 2 0 Protein of unknown function DUF47 Meth_synt_1 PF08267.12 gi|449066839|ref|YP_007433921.1| - 2.4e-20 73.3 2.3 2.4e-20 73.3 2.3 1.7 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|449066839|ref|YP_007433921.1| - 0.00044 19.6 0.0 0.002 17.4 0.0 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DUF2150 PF09920.9 gi|449066839|ref|YP_007433921.1| - 0.014 15.4 0.4 0.049 13.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) Lipase_GDSL PF00657.22 gi|449066839|ref|YP_007433921.1| - 0.11 12.5 1.4 2.6 8.0 0.1 2.4 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase Meth_synt_2 PF01717.18 gi|449066840|ref|YP_007433922.1| - 3.6e-64 217.1 0.0 4.6e-64 216.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|449066840|ref|YP_007433922.1| - 8.1e-14 51.8 1.6 1.2e-12 48.0 1.5 2.0 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain DUF4830 PF16112.5 gi|449066840|ref|YP_007433922.1| - 0.079 13.4 0.2 0.23 11.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4830) Ribosomal_S13_N PF08069.12 gi|449066841|ref|YP_007433923.1| - 8.3e-23 80.2 0.1 2.7e-22 78.6 0.0 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|449066841|ref|YP_007433923.1| - 6.6e-14 51.9 0.1 9.4e-14 51.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF2408 PF10303.9 gi|449066841|ref|YP_007433923.1| - 0.044 14.3 0.0 0.074 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) CbiX PF01903.17 gi|449066842|ref|YP_007433924.1| - 1.1e-27 96.5 0.1 1.2e-27 96.3 0.1 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|449066842|ref|YP_007433924.1| - 3.8e-05 23.1 0.0 4.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.19 gi|449066842|ref|YP_007433924.1| - 0.036 13.1 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Ferrochelatase Ribosomal_S6e PF01092.19 gi|449066843|ref|YP_007433925.1| - 1.1e-23 83.6 0.8 3e-22 78.9 0.0 2.4 2 0 0 2 2 2 2 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|449066844|ref|YP_007433926.1| - 1.5e-29 103.0 0.1 7.9e-29 100.6 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|449066844|ref|YP_007433926.1| - 1.5e-25 89.3 1.3 3.6e-25 88.0 1.3 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|449066844|ref|YP_007433926.1| - 2.5e-09 37.4 0.4 2.3e-08 34.3 0.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|449066844|ref|YP_007433926.1| - 1e-05 25.5 0.0 4.3e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|449066844|ref|YP_007433926.1| - 0.00011 22.2 0.1 0.0054 16.7 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|449066844|ref|YP_007433926.1| - 0.0055 16.5 0.2 0.6 9.8 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation PIN_9 PF18477.1 gi|449066845|ref|YP_007433927.1| - 3.1e-12 46.8 0.1 3.7e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|449066845|ref|YP_007433927.1| - 8.9e-07 29.3 0.3 5e-05 23.6 0.3 2.0 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|449066845|ref|YP_007433927.1| - 2.6e-06 28.0 0.6 7.8e-06 26.4 0.6 1.7 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|449066845|ref|YP_007433927.1| - 0.081 12.7 0.2 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) S1 PF00575.23 gi|449066846|ref|YP_007433928.1| - 1.7e-17 63.5 0.7 1.7e-17 63.5 0.7 1.6 2 0 0 2 2 2 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.17 gi|449066846|ref|YP_007433928.1| - 7.3e-16 58.3 0.1 1.4e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 RNA_pol_Rbc25 PF08292.12 gi|449066846|ref|YP_007433928.1| - 0.072 13.3 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|449066847|ref|YP_007433929.1| - 4.3e-13 49.2 0.1 5.2e-13 48.9 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DUF35_N PF12172.8 gi|449066847|ref|YP_007433929.1| - 0.0031 17.4 2.1 0.0042 16.9 2.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|449066847|ref|YP_007433929.1| - 0.0059 16.6 1.4 0.0079 16.2 1.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|449066847|ref|YP_007433929.1| - 0.012 16.3 1.1 0.015 16.0 1.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family UPF0547 PF10571.9 gi|449066847|ref|YP_007433929.1| - 0.022 14.8 3.0 0.038 14.1 3.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C4H2 PF10146.9 gi|449066847|ref|YP_007433929.1| - 0.052 13.8 1.5 0.063 13.6 1.5 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein RecR PF02132.15 gi|449066847|ref|YP_007433929.1| - 0.11 12.1 1.6 0.15 11.7 1.6 1.2 1 0 0 1 1 1 0 RecR protein DUF359 PF04019.12 gi|449066848|ref|YP_007433930.1| - 4e-34 117.0 0.1 5e-34 116.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Holin_BlyA PF05102.12 gi|449066848|ref|YP_007433930.1| - 0.93 9.5 6.0 0.71 9.9 0.2 2.7 2 1 0 2 2 2 0 holin, BlyA family PhosphMutase PF10143.9 gi|449066849|ref|YP_007433931.1| - 8.2e-54 182.0 0.0 1.6e-53 181.0 0.0 1.5 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|449066849|ref|YP_007433931.1| - 2.2e-33 115.7 0.1 2.5e-33 115.5 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF4410 PF14366.6 gi|449066849|ref|YP_007433931.1| - 0.019 14.9 0.2 0.045 13.6 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4410) Phosphodiest PF01663.22 gi|449066849|ref|YP_007433931.1| - 0.073 12.6 0.0 0.13 11.8 0.0 1.6 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase AAA PF00004.29 gi|449066850|ref|YP_007433932.1| - 2.6e-100 332.1 0.0 1.7e-50 170.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|449066850|ref|YP_007433932.1| - 1.1e-29 102.0 0.8 3.4e-14 52.4 0.1 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|449066850|ref|YP_007433932.1| - 1.6e-24 85.9 2.0 4.2e-24 84.5 2.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|449066850|ref|YP_007433932.1| - 2.3e-18 65.7 0.2 1.7e-16 59.8 0.1 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|449066850|ref|YP_007433932.1| - 2.7e-16 60.1 0.0 1.8e-08 34.7 0.0 3.0 3 0 0 3 3 3 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|449066850|ref|YP_007433932.1| - 6.2e-16 58.5 0.0 1.7e-07 31.1 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|449066850|ref|YP_007433932.1| - 2.8e-14 53.9 0.1 2.1e-06 28.2 0.0 3.7 2 1 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|449066850|ref|YP_007433932.1| - 3.9e-12 46.4 0.3 5.4e-05 23.2 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|449066850|ref|YP_007433932.1| - 7.8e-12 45.1 0.3 7.2e-05 22.2 0.0 2.8 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|449066850|ref|YP_007433932.1| - 2.5e-11 44.0 0.8 0.0015 18.8 0.1 4.2 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|449066850|ref|YP_007433932.1| - 3.2e-11 43.6 0.0 0.00012 22.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|449066850|ref|YP_007433932.1| - 4.6e-11 42.9 0.0 0.00034 20.6 0.0 3.5 3 0 0 3 3 3 2 AAA domain Vps4_C PF09336.10 gi|449066850|ref|YP_007433932.1| - 2e-10 40.5 3.7 2.1e-05 24.5 0.0 3.6 4 0 0 4 4 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|449066850|ref|YP_007433932.1| - 2.8e-09 37.6 0.2 0.0015 19.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|449066850|ref|YP_007433932.1| - 4.7e-09 36.2 0.0 0.0019 18.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|449066850|ref|YP_007433932.1| - 3.2e-08 34.0 0.0 0.0046 17.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|449066850|ref|YP_007433932.1| - 1.1e-07 31.5 1.0 0.0083 15.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|449066850|ref|YP_007433932.1| - 1.8e-07 31.0 0.9 0.4 10.2 0.7 4.2 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|449066850|ref|YP_007433932.1| - 3.7e-07 30.1 0.0 0.02 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|449066850|ref|YP_007433932.1| - 4.8e-07 30.1 0.0 0.013 15.9 0.0 2.8 2 0 0 2 2 2 2 RNA helicase TsaE PF02367.17 gi|449066850|ref|YP_007433932.1| - 1.7e-06 28.0 0.3 0.05 13.6 0.0 3.0 2 2 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|449066850|ref|YP_007433932.1| - 1e-05 25.3 0.1 0.31 10.7 0.0 3.7 2 2 0 2 2 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|449066850|ref|YP_007433932.1| - 1.6e-05 24.3 0.1 0.16 11.2 0.1 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_3 PF07726.11 gi|449066850|ref|YP_007433932.1| - 2.2e-05 24.3 0.0 0.21 11.4 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|449066850|ref|YP_007433932.1| - 2.8e-05 23.4 0.2 0.069 12.2 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|449066850|ref|YP_007433932.1| - 3.7e-05 23.7 1.3 0.63 9.9 0.1 3.6 4 0 0 4 4 4 2 NACHT domain AAA_7 PF12775.7 gi|449066850|ref|YP_007433932.1| - 5.1e-05 22.9 0.0 0.43 10.1 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|449066850|ref|YP_007433932.1| - 7.7e-05 22.0 0.0 0.14 11.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|449066850|ref|YP_007433932.1| - 0.00013 22.4 0.0 1.1 9.8 0.0 3.0 3 0 0 3 3 2 2 ABC transporter DUF2075 PF09848.9 gi|449066850|ref|YP_007433932.1| - 0.00016 21.0 0.0 0.025 13.8 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|449066850|ref|YP_007433932.1| - 0.00017 21.5 0.0 0.049 13.5 0.0 3.0 2 1 0 2 2 2 1 Bacterial dnaA protein ATPase PF06745.13 gi|449066850|ref|YP_007433932.1| - 0.00017 21.0 5.8 0.46 9.8 0.0 4.5 4 1 0 4 4 4 2 KaiC PhoH PF02562.16 gi|449066850|ref|YP_007433932.1| - 0.0002 20.9 0.8 0.51 9.8 0.2 2.5 2 0 0 2 2 2 2 PhoH-like protein Rad17 PF03215.15 gi|449066850|ref|YP_007433932.1| - 0.00047 20.1 0.0 0.7 9.8 0.0 3.2 2 1 1 3 3 3 1 Rad17 P-loop domain AFG1_ATPase PF03969.16 gi|449066850|ref|YP_007433932.1| - 0.00098 18.1 0.0 0.32 9.8 0.0 2.7 3 0 0 3 3 3 1 AFG1-like ATPase SKI PF01202.22 gi|449066850|ref|YP_007433932.1| - 0.001 19.2 0.0 0.31 11.2 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.6 gi|449066850|ref|YP_007433932.1| - 0.0011 18.8 0.8 1.1 9.0 0.0 2.7 3 0 0 3 3 2 1 AAA domain ATPase_2 PF01637.18 gi|449066850|ref|YP_007433932.1| - 0.0013 18.7 1.6 0.76 9.6 0.0 3.7 3 2 1 4 4 3 1 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|449066850|ref|YP_007433932.1| - 0.0013 19.2 0.0 2.9 8.3 0.0 3.0 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.6 gi|449066850|ref|YP_007433932.1| - 0.0017 18.7 0.8 2.3 8.5 0.0 3.0 2 1 1 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|449066850|ref|YP_007433932.1| - 0.0025 17.5 0.6 3.3 7.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain IPT PF01745.16 gi|449066850|ref|YP_007433932.1| - 0.0031 16.9 0.3 1.5 8.2 0.1 2.5 2 0 0 2 2 2 1 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|449066850|ref|YP_007433932.1| - 0.0037 17.0 0.1 2.4 7.8 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase Viral_helicase1 PF01443.18 gi|449066850|ref|YP_007433932.1| - 0.0044 16.8 0.0 0.86 9.3 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.6 gi|449066850|ref|YP_007433932.1| - 0.0049 17.0 0.0 4 7.6 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 gi|449066850|ref|YP_007433932.1| - 0.0054 16.2 0.0 1.7 8.0 0.0 3.1 4 0 0 4 4 2 1 Bacterial TniB protein AAA_6 PF12774.7 gi|449066850|ref|YP_007433932.1| - 0.013 14.5 0.0 0.59 9.0 0.0 2.5 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region T2SSE PF00437.20 gi|449066850|ref|YP_007433932.1| - 0.013 14.6 0.0 2.2 7.3 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|449066850|ref|YP_007433932.1| - 0.014 15.1 0.2 7.3 6.3 0.0 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation UFD1 PF03152.14 gi|449066850|ref|YP_007433932.1| - 0.021 14.3 0.0 0.049 13.1 0.0 1.7 1 1 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 NB-ARC PF00931.22 gi|449066850|ref|YP_007433932.1| - 0.027 13.7 0.0 7.9 5.6 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain ResIII PF04851.15 gi|449066850|ref|YP_007433932.1| - 0.043 13.8 0.1 12 5.8 0.0 2.8 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|449066850|ref|YP_007433932.1| - 0.045 13.5 0.0 14 5.5 0.1 2.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.21 gi|449066850|ref|YP_007433932.1| - 0.062 13.0 4.4 16 5.2 0.0 4.7 3 2 2 5 5 5 0 Guanylate kinase Hydin_ADK PF17213.3 gi|449066850|ref|YP_007433932.1| - 0.14 12.4 0.8 7.7 6.7 0.0 2.8 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain NTPase_1 PF03266.15 gi|449066850|ref|YP_007433932.1| - 0.61 10.0 9.6 18 5.2 0.0 4.7 5 1 1 6 6 4 0 NTPase AAA_23 PF13476.6 gi|449066850|ref|YP_007433932.1| - 0.93 9.9 2.9 46 4.4 0.0 3.5 4 0 0 4 4 3 0 AAA domain Topoisom_bac PF01131.20 gi|449066851|ref|YP_007433933.1| - 6.6e-72 242.8 0.9 4.2e-71 240.1 0.9 2.3 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|449066851|ref|YP_007433933.1| - 1.3e-26 92.8 0.3 8.8e-26 90.1 0.0 2.6 2 1 0 2 2 2 1 Toprim domain DEAD PF00270.29 gi|449066851|ref|YP_007433933.1| - 4.1e-14 52.7 0.0 7.4e-13 48.6 0.0 2.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|449066851|ref|YP_007433933.1| - 1e-06 29.1 0.1 0.41 11.0 0.0 5.1 5 0 0 5 5 5 2 Helicase conserved C-terminal domain zf_Rg PF17915.1 gi|449066851|ref|YP_007433933.1| - 6.3e-06 25.5 0.5 6.3e-06 25.5 0.5 1.9 2 0 0 2 2 2 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|449066851|ref|YP_007433933.1| - 1.6e-05 25.0 2.0 0.0019 18.2 2.0 2.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sgf11 PF08209.11 gi|449066851|ref|YP_007433933.1| - 0.0085 15.6 0.1 0.021 14.4 0.1 1.7 1 0 0 1 1 1 1 Sgf11 (transcriptional regulation protein) AAA_11 PF13086.6 gi|449066851|ref|YP_007433933.1| - 0.033 14.0 0.0 0.086 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Toprim_4 PF13662.6 gi|449066851|ref|YP_007433933.1| - 0.099 13.1 0.2 0.98 9.9 0.0 2.7 3 0 0 3 3 3 0 Toprim domain AAA_24 PF13479.6 gi|449066851|ref|YP_007433933.1| - 0.099 12.3 0.0 0.28 10.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.10 gi|449066851|ref|YP_007433933.1| - 2.7 8.2 3.8 31 4.8 0.3 2.5 2 0 0 2 2 2 0 Zinc ribbon domain CN_hydrolase PF00795.22 gi|449066852|ref|YP_007433934.1| - 9.7e-17 61.2 0.0 1.2e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase TMP-TENI PF02581.17 gi|449066852|ref|YP_007433934.1| - 0.062 12.6 0.1 0.18 11.1 0.1 1.7 2 0 0 2 2 2 0 Thiamine monophosphate synthase AP_endonuc_2 PF01261.24 gi|449066852|ref|YP_007433934.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Ribosomal_S25 PF03297.15 gi|449066853|ref|YP_007433935.1| - 1.4e-19 70.1 11.4 1.7e-19 69.9 11.4 1.0 1 0 0 1 1 1 1 S25 ribosomal protein HTH_Crp_2 PF13545.6 gi|449066853|ref|YP_007433935.1| - 0.00013 21.8 1.1 0.0062 16.5 0.2 2.2 1 1 1 2 2 2 2 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|449066853|ref|YP_007433935.1| - 0.00099 18.6 0.6 0.36 10.4 0.2 2.5 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|449066853|ref|YP_007433935.1| - 0.0012 18.7 1.8 0.0042 17.0 0.3 2.4 2 1 1 3 3 3 1 MarR family EAP30 PF04157.16 gi|449066853|ref|YP_007433935.1| - 0.003 16.9 0.4 0.0046 16.3 0.4 1.3 1 1 0 1 1 1 1 EAP30/Vps36 family TrmB PF01978.19 gi|449066853|ref|YP_007433935.1| - 0.0043 16.9 3.0 0.01 15.7 0.5 2.3 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|449066853|ref|YP_007433935.1| - 0.0072 16.6 1.6 0.99 9.8 0.1 2.2 1 1 1 2 2 2 2 Transcriptional regulator HTH_11 PF08279.12 gi|449066853|ref|YP_007433935.1| - 0.008 16.1 0.8 0.008 16.1 0.8 2.0 3 0 0 3 3 3 1 HTH domain IF2_N PF04760.15 gi|449066853|ref|YP_007433935.1| - 0.011 15.6 2.5 0.66 9.8 0.2 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Fe_dep_repress PF01325.19 gi|449066853|ref|YP_007433935.1| - 0.016 15.4 0.4 0.016 15.4 0.4 2.4 2 1 1 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|449066853|ref|YP_007433935.1| - 0.17 11.8 0.1 0.72 9.8 0.0 2.0 2 1 1 3 3 3 0 MarR family TrmB PF01978.19 gi|449066854|ref|YP_007433936.1| - 3e-19 68.7 0.1 9.5e-19 67.1 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449066854|ref|YP_007433936.1| - 1.4e-06 27.7 0.5 4.3e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|449066854|ref|YP_007433936.1| - 0.00054 19.8 0.1 0.0016 18.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|449066854|ref|YP_007433936.1| - 0.00062 20.2 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|449066854|ref|YP_007433936.1| - 0.0038 17.0 0.1 0.01 15.7 0.1 1.7 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.16 gi|449066854|ref|YP_007433936.1| - 0.0045 17.3 0.1 0.0098 16.2 0.1 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_28 PF13518.6 gi|449066854|ref|YP_007433936.1| - 0.0047 17.0 0.0 0.019 15.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain PadR PF03551.14 gi|449066854|ref|YP_007433936.1| - 0.0072 16.3 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|449066854|ref|YP_007433936.1| - 0.0072 16.5 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|449066854|ref|YP_007433936.1| - 0.0092 15.9 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|449066854|ref|YP_007433936.1| - 0.0097 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|449066854|ref|YP_007433936.1| - 0.042 14.2 0.0 0.13 12.7 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator SMC_ScpB PF04079.16 gi|449066854|ref|YP_007433936.1| - 0.085 12.5 0.0 0.31 10.6 0.0 1.9 3 0 0 3 3 3 0 Segregation and condensation complex subunit ScpB HTH_IclR PF09339.10 gi|449066854|ref|YP_007433936.1| - 0.091 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TnsD PF15978.5 gi|449066854|ref|YP_007433936.1| - 0.15 11.0 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_29 PF13551.6 gi|449066854|ref|YP_007433936.1| - 0.16 12.0 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix RHH_1 PF01402.21 gi|449066855|ref|YP_007433937.1| - 2.5e-09 36.7 0.0 3.1e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|449066855|ref|YP_007433937.1| - 4.5e-05 23.8 0.0 4.9e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_8 PF17723.1 gi|449066855|ref|YP_007433937.1| - 0.0016 18.6 0.0 0.0018 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|449066855|ref|YP_007433937.1| - 0.0018 18.1 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB HicB_lk_antitox PF15919.5 gi|449066855|ref|YP_007433937.1| - 0.084 13.0 0.0 0.094 12.8 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system GCD14 PF08704.10 gi|449066856|ref|YP_007433938.1| - 9.7e-30 104.0 0.0 1.3e-29 103.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|449066856|ref|YP_007433938.1| - 1.4e-10 41.2 0.0 1.9e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|449066856|ref|YP_007433938.1| - 1.6e-08 34.6 0.0 2.1e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|449066856|ref|YP_007433938.1| - 4.9e-07 30.4 0.0 8.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|449066856|ref|YP_007433938.1| - 3.4e-05 24.4 0.0 6.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449066856|ref|YP_007433938.1| - 7.2e-05 22.2 0.0 0.00013 21.3 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14_N PF14801.6 gi|449066856|ref|YP_007433938.1| - 0.00013 21.7 0.0 0.00023 20.9 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term PrmA PF06325.13 gi|449066856|ref|YP_007433938.1| - 0.00017 21.1 0.0 0.00023 20.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|449066856|ref|YP_007433938.1| - 0.0006 20.8 0.0 0.001 20.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|449066856|ref|YP_007433938.1| - 0.0007 19.2 0.0 0.0041 16.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|449066856|ref|YP_007433938.1| - 0.00074 19.5 0.0 0.00093 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|449066856|ref|YP_007433938.1| - 0.00084 19.3 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|449066856|ref|YP_007433938.1| - 0.0081 15.4 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.6 gi|449066856|ref|YP_007433938.1| - 0.011 15.6 0.0 0.2 11.5 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|449066856|ref|YP_007433938.1| - 0.036 13.7 0.1 0.13 11.9 0.1 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 RrnaAD PF00398.20 gi|449066856|ref|YP_007433938.1| - 0.055 12.5 0.0 0.076 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltr_RsmB-F PF01189.17 gi|449066856|ref|YP_007433938.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Exonuc_X-T_C PF08411.10 gi|449066856|ref|YP_007433938.1| - 0.15 11.1 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Exonuclease C-terminal V-ATPase_G_2 PF16999.5 gi|449066857|ref|YP_007433939.1| - 0.0018 18.6 3.5 0.0025 18.2 3.5 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ArenaCapSnatch PF17296.2 gi|449066857|ref|YP_007433939.1| - 0.012 15.1 0.7 0.53 9.7 0.1 2.2 1 1 1 2 2 2 0 Arenavirus cap snatching domain DUF826 PF05696.11 gi|449066857|ref|YP_007433939.1| - 0.033 14.2 6.7 0.073 13.2 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF826) DIT1_PvcA PF05141.12 gi|449066857|ref|YP_007433939.1| - 0.081 12.4 1.5 0.093 12.2 1.5 1.0 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein vATP-synt_AC39 PF01992.16 gi|449066858|ref|YP_007433940.1| - 6.9e-25 88.3 5.9 7.9e-25 88.1 5.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ER PF01133.17 gi|449066858|ref|YP_007433940.1| - 0.047 13.7 0.7 0.17 11.9 0.1 2.3 2 1 1 3 3 3 0 Enhancer of rudimentary Ten1_2 PF15490.6 gi|449066858|ref|YP_007433940.1| - 0.067 12.9 0.1 13 5.5 0.0 2.6 1 1 1 2 2 2 0 Telomere-capping, CST complex subunit Rep_N PF08724.10 gi|449066858|ref|YP_007433940.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Rep protein catalytic domain like Aldo_ket_red PF00248.21 gi|449066860|ref|YP_007433942.1| - 1.3e-47 162.4 0.0 1.8e-47 162.0 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family Ham1p_like PF01725.16 gi|449066861|ref|YP_007433943.1| - 4.9e-50 170.0 0.0 5.6e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.22 gi|449066862|ref|YP_007433944.1| - 2.1e-11 43.8 0.0 3.1e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|449066862|ref|YP_007433944.1| - 9.2e-10 38.3 0.4 1.1e-09 38.0 0.4 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|449066862|ref|YP_007433944.1| - 5.3e-09 35.7 0.1 9.3e-09 34.9 0.1 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|449066862|ref|YP_007433944.1| - 1.2e-08 35.2 0.0 0.00015 21.8 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|449066862|ref|YP_007433944.1| - 3.9e-06 26.3 0.1 6.4e-06 25.6 0.1 1.4 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|449066862|ref|YP_007433944.1| - 4.1e-05 23.3 0.8 4.9e-05 23.1 0.8 1.5 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_fungal PF17667.1 gi|449066862|ref|YP_007433944.1| - 0.005 15.7 0.3 0.0056 15.5 0.3 1.2 1 0 0 1 1 1 1 Fungal protein kinase Choline_kinase PF01633.20 gi|449066862|ref|YP_007433944.1| - 0.023 14.3 0.1 0.05 13.2 0.1 1.6 1 1 0 1 1 1 0 Choline/ethanolamine kinase EcKinase PF02958.20 gi|449066862|ref|YP_007433944.1| - 0.034 13.5 0.1 0.058 12.7 0.1 1.4 1 0 0 1 1 1 0 Ecdysteroid kinase DUF4135 PF13575.6 gi|449066862|ref|YP_007433944.1| - 0.16 11.3 0.6 5.5 6.2 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4135) Peptidase_M22 PF00814.25 gi|449066863|ref|YP_007433945.1| - 9.7e-78 261.6 0.2 1.2e-77 261.3 0.2 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|449066864|ref|YP_007433946.1| - 1.3e-14 54.1 1.7 1.6e-14 53.8 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|449066864|ref|YP_007433946.1| - 0.00035 20.5 2.1 0.00049 20.0 2.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|449066864|ref|YP_007433946.1| - 0.0011 18.9 0.6 0.0012 18.7 0.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|449066864|ref|YP_007433946.1| - 0.0013 18.6 0.2 0.0029 17.4 0.2 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn_ribbon_SprT PF17283.2 gi|449066864|ref|YP_007433946.1| - 0.0052 16.7 0.5 0.0078 16.1 0.5 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain GFA PF04828.14 gi|449066864|ref|YP_007433946.1| - 0.0085 16.4 1.0 0.52 10.7 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Lar_restr_allev PF14354.6 gi|449066864|ref|YP_007433946.1| - 0.015 15.7 1.1 0.028 14.8 1.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar TackOD1 PF18551.1 gi|449066864|ref|YP_007433946.1| - 0.023 14.4 0.3 0.023 14.4 0.3 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Nudix_N_2 PF14803.6 gi|449066864|ref|YP_007433946.1| - 0.025 14.5 2.0 0.073 13.0 2.0 1.7 1 1 0 1 1 1 0 Nudix N-terminal FAM72 PF14976.6 gi|449066864|ref|YP_007433946.1| - 0.052 13.7 0.4 0.071 13.3 0.4 1.3 1 1 0 1 1 1 0 FAM72 protein Zn-ribbon_8 PF09723.10 gi|449066864|ref|YP_007433946.1| - 0.053 13.7 3.2 0.13 12.4 0.1 2.1 1 1 0 2 2 2 0 Zinc ribbon domain NRDD PF13597.6 gi|449066864|ref|YP_007433946.1| - 0.062 12.1 0.8 0.06 12.1 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf_UBZ PF18439.1 gi|449066864|ref|YP_007433946.1| - 0.069 12.8 2.3 0.3 10.7 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_13 PF09855.9 gi|449066864|ref|YP_007433946.1| - 0.078 13.2 1.6 0.87 9.8 0.1 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-tcix PF14952.6 gi|449066864|ref|YP_007433946.1| - 0.19 11.4 4.5 0.22 11.2 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ribbon_3 PF13248.6 gi|449066864|ref|YP_007433946.1| - 0.28 10.6 6.3 0.35 10.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|449066864|ref|YP_007433946.1| - 0.29 11.2 5.5 2 8.6 5.4 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf_C2H2_10 PF18414.1 gi|449066864|ref|YP_007433946.1| - 0.36 10.4 2.1 7.6 6.2 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger YhfH PF14149.6 gi|449066864|ref|YP_007433946.1| - 0.7 9.9 7.8 7.6 6.6 7.5 2.1 1 1 1 2 2 2 0 YhfH-like protein zinc_ribbon_5 PF13719.6 gi|449066864|ref|YP_007433946.1| - 0.71 9.7 4.5 2.3 8.0 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|449066864|ref|YP_007433946.1| - 0.72 9.6 0.1 0.72 9.6 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|449066864|ref|YP_007433946.1| - 2.1 7.9 6.4 0.23 11.0 1.0 1.9 1 1 1 2 2 2 0 Mu-like prophage protein Com Ribosomal_S24e PF01282.19 gi|449066865|ref|YP_007433947.1| - 1.9e-17 63.0 0.1 2.5e-17 62.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Thi4 PF01946.17 gi|449066866|ref|YP_007433948.1| - 1.7e-81 272.9 4.0 2e-81 272.7 4.0 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|449066866|ref|YP_007433948.1| - 8.2e-15 55.2 5.5 9.1e-09 35.3 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|449066866|ref|YP_007433948.1| - 5.2e-10 39.4 0.6 2.2e-09 37.4 0.6 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|449066866|ref|YP_007433948.1| - 6e-10 39.1 3.2 7.8e-10 38.7 3.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|449066866|ref|YP_007433948.1| - 1.2e-09 37.7 6.6 1.6e-07 30.8 1.0 2.6 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|449066866|ref|YP_007433948.1| - 1.3e-09 37.7 0.4 1.6e-09 37.4 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|449066866|ref|YP_007433948.1| - 4.9e-07 29.3 0.0 7.6e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|449066866|ref|YP_007433948.1| - 4.3e-06 25.7 0.1 5.9e-06 25.2 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|449066866|ref|YP_007433948.1| - 1.3e-05 24.5 0.7 2.4e-05 23.6 0.7 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|449066866|ref|YP_007433948.1| - 0.00013 21.4 0.0 0.00028 20.2 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449066866|ref|YP_007433948.1| - 0.00031 21.2 0.4 0.0013 19.2 0.4 2.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|449066866|ref|YP_007433948.1| - 0.0029 17.0 0.1 0.0061 15.9 0.1 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|449066866|ref|YP_007433948.1| - 0.0039 16.3 0.7 0.01 14.9 0.7 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|449066866|ref|YP_007433948.1| - 0.018 14.2 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|449066866|ref|YP_007433948.1| - 0.1 12.6 1.6 0.15 12.0 0.2 2.0 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|449066866|ref|YP_007433948.1| - 0.11 11.3 4.9 0.19 10.6 0.7 2.4 2 1 1 3 3 3 0 Tryptophan halogenase GMC_oxred_N PF00732.19 gi|449066866|ref|YP_007433948.1| - 0.15 11.4 0.1 0.32 10.3 0.0 1.5 2 0 0 2 2 2 0 GMC oxidoreductase Arc_trans_TRASH PF08394.10 gi|449066867|ref|YP_007433949.1| - 0.00017 21.8 4.8 0.00026 21.2 4.8 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain SH3_6 PF12913.7 gi|449066867|ref|YP_007433949.1| - 0.02 14.4 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 SH3 domain (SH3b1 type) zf-FCS PF06467.14 gi|449066867|ref|YP_007433949.1| - 0.031 14.2 9.9 0.076 13.0 9.9 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|449066867|ref|YP_007433949.1| - 0.08 13.1 0.7 0.13 12.4 0.7 1.5 1 1 0 1 1 1 0 YHS domain DUF3388 PF11868.8 gi|449066867|ref|YP_007433949.1| - 0.086 12.2 0.0 0.09 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3388) zf-SNAP50_C PF12251.8 gi|449066867|ref|YP_007433949.1| - 0.21 11.2 3.6 0.24 11.1 3.6 1.2 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal Flavoprotein PF02441.19 gi|449066868|ref|YP_007433950.1| - 1.5e-24 86.6 0.0 1.9e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein tRNA_int_endo PF01974.17 gi|449066870|ref|YP_007433952.1| - 3.8e-27 94.2 0.0 7.3e-27 93.3 0.0 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|449066870|ref|YP_007433952.1| - 3.4e-21 74.7 0.2 1.4e-20 72.7 0.2 1.9 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain PhoU_div PF01865.16 gi|449066871|ref|YP_007433953.1| - 3.3e-08 33.1 7.8 2.4e-07 30.3 2.0 2.1 1 1 0 2 2 2 2 Protein of unknown function DUF47 PhoU PF01895.19 gi|449066871|ref|YP_007433953.1| - 7.9e-06 26.3 10.5 0.00036 20.9 3.1 2.9 2 1 1 3 3 3 2 PhoU domain Vta1 PF04652.16 gi|449066871|ref|YP_007433953.1| - 0.0014 18.6 2.7 0.0017 18.4 0.5 1.9 1 1 1 2 2 2 1 Vta1 like Tropomyosin PF00261.20 gi|449066871|ref|YP_007433953.1| - 0.0025 17.3 2.0 0.012 15.0 0.7 2.0 1 1 1 2 2 2 1 Tropomyosin RmuC PF02646.16 gi|449066871|ref|YP_007433953.1| - 0.014 14.6 2.3 0.064 12.4 0.2 2.3 1 1 2 3 3 3 0 RmuC family DUF948 PF06103.11 gi|449066871|ref|YP_007433953.1| - 0.015 15.6 0.9 2.9 8.2 0.2 2.4 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HrpJ PF07201.11 gi|449066871|ref|YP_007433953.1| - 0.022 15.1 0.7 0.047 14.0 0.2 1.8 2 0 0 2 2 2 0 HrpJ-like domain PriC PF07445.12 gi|449066871|ref|YP_007433953.1| - 0.026 14.5 1.4 0.095 12.6 0.1 2.1 1 1 0 2 2 2 0 Primosomal replication protein priC DUF1664 PF07889.12 gi|449066871|ref|YP_007433953.1| - 0.051 13.6 0.3 0.27 11.3 0.0 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) T4_tail_cap PF11091.8 gi|449066871|ref|YP_007433953.1| - 0.081 11.8 2.6 0.17 10.8 0.3 1.9 1 1 0 2 2 2 0 Tail-tube assembly protein DASH_Dad2 PF08654.10 gi|449066871|ref|YP_007433953.1| - 0.12 12.8 1.4 9 6.8 0.3 3.3 1 1 1 2 2 2 0 DASH complex subunit Dad2 Interferon PF00143.19 gi|449066871|ref|YP_007433953.1| - 0.19 11.9 1.9 0.41 10.8 0.6 1.8 2 0 0 2 2 2 0 Interferon alpha/beta domain Laminin_II PF06009.12 gi|449066871|ref|YP_007433953.1| - 0.54 10.3 7.2 2 8.4 0.1 2.8 2 1 1 3 3 3 0 Laminin Domain II Fib_alpha PF08702.10 gi|449066871|ref|YP_007433953.1| - 0.85 9.8 7.2 1.6 8.9 3.4 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family EcoEI_R_C PF08463.10 gi|449066872|ref|YP_007433954.1| - 0.033 14.3 2.1 0.062 13.4 1.5 1.7 1 1 0 1 1 1 0 EcoEI R protein C-terminal Fmp27_WPPW PF10359.9 gi|449066872|ref|YP_007433954.1| - 0.072 11.9 0.3 0.089 11.6 0.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Molydop_binding PF01568.21 gi|449066873|ref|YP_007433955.1| - 0.00022 21.2 0.2 0.15 12.1 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain HGTP_anticodon PF03129.20 gi|449066874|ref|YP_007433956.1| - 7.3e-18 64.5 0.0 1.7e-17 63.3 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|449066874|ref|YP_007433956.1| - 2.8e-07 30.7 0.6 1.8e-06 28.1 0.6 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) YokU PF14122.6 gi|449066874|ref|YP_007433956.1| - 0.058 13.4 2.2 0.41 10.6 0.0 2.8 2 0 0 2 2 2 0 YokU-like protein, putative antitoxin Rad50_zn_hook PF04423.14 gi|449066874|ref|YP_007433956.1| - 0.31 10.9 2.1 1.3 9.0 0.1 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif Arginase PF00491.21 gi|449066875|ref|YP_007433957.1| - 1.3e-70 238.1 0.0 1.6e-70 237.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.13 gi|449066876|ref|YP_007433958.1| - 1.9e-06 27.5 4.7 3.9e-06 26.4 4.7 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|449066876|ref|YP_007433958.1| - 0.0093 16.1 0.3 0.013 15.6 0.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain DUF2072 PF09845.9 gi|449066876|ref|YP_007433958.1| - 0.0095 16.2 0.2 0.0095 16.2 0.2 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein HypA PF01155.19 gi|449066876|ref|YP_007433958.1| - 0.013 15.5 0.1 0.013 15.5 0.1 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|449066876|ref|YP_007433958.1| - 0.029 13.8 2.6 0.11 12.0 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|449066876|ref|YP_007433958.1| - 0.03 14.3 0.4 0.068 13.2 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|449066876|ref|YP_007433958.1| - 0.042 13.8 4.4 0.051 13.5 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|449066876|ref|YP_007433958.1| - 0.048 13.4 4.5 0.38 10.5 4.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|449066876|ref|YP_007433958.1| - 0.058 13.2 5.5 0.7 9.7 0.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|449066876|ref|YP_007433958.1| - 0.1 13.1 1.9 8.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.11 gi|449066876|ref|YP_007433958.1| - 0.14 12.1 1.7 6.7 6.7 0.0 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-BED PF02892.15 gi|449066876|ref|YP_007433958.1| - 0.14 12.2 2.1 3.3 7.8 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger SUI1 PF01253.22 gi|449066877|ref|YP_007433959.1| - 9.9e-23 80.5 0.9 1.3e-22 80.1 0.9 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|449066877|ref|YP_007433959.1| - 0.00036 20.8 1.0 0.00047 20.4 1.0 1.3 1 0 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) TFIIB PF00382.19 gi|449066878|ref|YP_007433960.1| - 2.5e-35 120.3 5.4 2.9e-17 62.5 0.7 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|449066878|ref|YP_007433960.1| - 2.9e-11 42.7 0.4 5.6e-11 41.8 0.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.6 gi|449066878|ref|YP_007433960.1| - 1e-05 25.2 0.1 3.1e-05 23.7 0.1 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|449066878|ref|YP_007433960.1| - 0.0001 21.7 3.2 0.0006 19.3 0.2 3.3 4 0 0 4 4 4 1 Sigma-70, region 4 Cyclin_C PF02984.19 gi|449066878|ref|YP_007433960.1| - 0.00062 19.8 0.1 0.4 10.8 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|449066878|ref|YP_007433960.1| - 0.0013 18.0 0.1 0.063 12.7 0.0 3.2 3 1 1 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 DUF3562 PF12085.8 gi|449066878|ref|YP_007433960.1| - 0.0028 17.2 0.6 0.7 9.5 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3562) Sigma70_r4_2 PF08281.12 gi|449066878|ref|YP_007433960.1| - 0.0028 17.3 0.1 0.013 15.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|449066878|ref|YP_007433960.1| - 0.0028 17.2 0.1 0.011 15.2 0.1 2.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|449066878|ref|YP_007433960.1| - 0.0056 16.6 0.2 0.012 15.6 0.2 1.6 1 0 0 1 1 1 1 HTH domain RB_B PF01857.20 gi|449066878|ref|YP_007433960.1| - 0.018 15.1 0.1 0.046 13.7 0.0 1.7 2 0 0 2 2 2 0 Retinoblastoma-associated protein B domain HTH_23 PF13384.6 gi|449066878|ref|YP_007433960.1| - 0.036 13.9 0.1 0.036 13.9 0.1 3.3 4 0 0 4 4 4 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|449066878|ref|YP_007433960.1| - 0.041 13.8 0.2 0.86 9.6 0.0 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Cyclin_N PF00134.23 gi|449066878|ref|YP_007433960.1| - 0.1 12.3 0.4 2.3 7.9 0.2 2.2 2 0 0 2 2 2 0 Cyclin, N-terminal domain DUF131 PF01998.17 gi|449066879|ref|YP_007433961.1| - 3.1e-12 45.9 10.9 3.4e-12 45.8 9.3 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 Pox_A14 PF05767.12 gi|449066879|ref|YP_007433961.1| - 0.28 11.3 1.8 5.2 7.3 0.1 2.1 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 DUF202 PF02656.15 gi|449066879|ref|YP_007433961.1| - 1.1 9.8 5.9 4.6 7.8 5.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2207 PF09972.9 gi|449066879|ref|YP_007433961.1| - 3.3 6.4 5.8 4.5 5.9 5.8 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SSV1_ORF_D-335 PF07935.11 gi|449066880|ref|YP_007433962.1| - 1.2e-09 38.4 4.0 1.7e-09 37.8 4.0 1.4 1 1 0 1 1 1 1 ORF D-335-like protein Glycos_transf_1 PF00534.20 gi|449066881|ref|YP_007433963.1| - 3.1e-18 65.9 0.2 6.9e-18 64.8 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449066881|ref|YP_007433963.1| - 2.7e-08 34.3 0.1 6e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|449066882|ref|YP_007433964.1| - 1.3e-11 44.6 0.0 1.8e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|449066882|ref|YP_007433964.1| - 0.038 13.5 0.0 0.1 12.0 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|449066882|ref|YP_007433964.1| - 0.061 13.8 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Peptidase_M48 PF01435.18 gi|449066883|ref|YP_007433965.1| - 4e-29 101.8 0.0 7.7e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 LPG_synthase_TM PF03706.13 gi|449066883|ref|YP_007433965.1| - 0.062 12.8 14.7 0.021 14.3 2.1 2.1 2 0 0 2 2 2 0 Lysylphosphatidylglycerol synthase TM region Peptidase_M56 PF05569.11 gi|449066883|ref|YP_007433965.1| - 0.11 11.6 1.8 0.12 11.6 0.4 1.8 2 1 0 2 2 2 0 BlaR1 peptidase M56 DUF3899 PF13038.6 gi|449066883|ref|YP_007433965.1| - 0.2 12.1 0.3 0.2 12.1 0.3 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF3899) E1-E2_ATPase PF00122.20 gi|449066884|ref|YP_007433966.1| - 2.4e-53 180.4 1.3 6.4e-53 179.0 1.3 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|449066884|ref|YP_007433966.1| - 7e-32 111.4 0.7 1.5e-31 110.3 0.7 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|449066884|ref|YP_007433966.1| - 5.1e-15 55.7 9.9 3e-13 50.0 2.8 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|449066884|ref|YP_007433966.1| - 3.1e-06 27.1 5.7 0.022 14.5 0.1 3.2 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase NLPC_P60 PF00877.19 gi|449066884|ref|YP_007433966.1| - 0.017 15.1 0.0 0.6 10.2 0.0 2.5 2 0 0 2 2 2 0 NlpC/P60 family Hydrolase_6 PF13344.6 gi|449066884|ref|YP_007433966.1| - 0.023 14.8 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|449066884|ref|YP_007433966.1| - 0.024 15.0 0.0 1 9.7 0.0 2.9 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|449066884|ref|YP_007433966.1| - 0.047 13.8 2.0 0.82 9.7 0.1 3.3 3 2 0 3 3 3 0 Haloacid dehalogenase-like hydrolase DAHP_snth_FXD PF18152.1 gi|449066884|ref|YP_007433966.1| - 0.21 11.4 6.8 2.1 8.2 1.5 4.1 4 1 1 5 5 5 0 DAHP synthase ferredoxin-like domain ACT_4 PF13291.6 gi|449066884|ref|YP_007433966.1| - 0.41 11.3 0.1 0.41 11.3 0.1 3.1 3 0 0 3 3 3 0 ACT domain YHS PF04945.13 gi|449066885|ref|YP_007433967.1| - 6.6e-20 70.9 3.4 7.2e-20 70.8 3.4 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|449066885|ref|YP_007433967.1| - 9.2e-05 22.7 1.7 0.00013 22.2 1.7 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|449066885|ref|YP_007433967.1| - 0.002 18.1 1.2 0.0028 17.6 1.2 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|449066885|ref|YP_007433967.1| - 0.021 14.4 0.1 0.022 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF2116 PF09889.9 gi|449066885|ref|YP_007433967.1| - 0.11 12.5 1.5 0.51 10.4 1.5 1.9 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.10 gi|449066886|ref|YP_007433968.1| - 6.3e-20 71.2 8.8 1.2e-19 70.3 8.8 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_11 PF08279.12 gi|449066886|ref|YP_007433968.1| - 8.9e-08 32.0 0.7 2.3e-07 30.6 0.7 1.7 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|449066886|ref|YP_007433968.1| - 1.3e-06 28.1 0.2 2.4e-06 27.2 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|449066886|ref|YP_007433968.1| - 5.4e-06 25.9 0.7 5.4e-06 25.9 0.7 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|449066886|ref|YP_007433968.1| - 8.5e-05 22.4 0.0 0.00013 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|449066886|ref|YP_007433968.1| - 8.9e-05 22.3 0.2 0.00014 21.7 0.2 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449066886|ref|YP_007433968.1| - 0.00017 21.4 0.2 0.00037 20.3 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.17 gi|449066886|ref|YP_007433968.1| - 0.0022 18.0 0.5 0.0047 16.9 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_29 PF13551.6 gi|449066886|ref|YP_007433968.1| - 0.0049 16.9 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|449066886|ref|YP_007433968.1| - 0.0084 15.9 0.1 0.017 14.9 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|449066886|ref|YP_007433968.1| - 0.0099 15.7 0.1 0.023 14.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|449066886|ref|YP_007433968.1| - 0.01 16.2 0.1 0.022 15.1 0.1 1.7 1 0 0 1 1 1 0 Penicillinase repressor HTH_36 PF13730.6 gi|449066886|ref|YP_007433968.1| - 0.015 15.2 0.6 0.034 14.1 0.6 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|449066886|ref|YP_007433968.1| - 0.023 15.3 0.7 0.057 14.0 0.2 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_20 PF12840.7 gi|449066886|ref|YP_007433968.1| - 0.03 14.4 1.8 0.032 14.3 0.0 1.9 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|449066886|ref|YP_007433968.1| - 0.04 14.4 0.1 0.064 13.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|449066886|ref|YP_007433968.1| - 0.043 13.6 0.6 0.11 12.3 0.2 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain APG17 PF04108.12 gi|449066886|ref|YP_007433968.1| - 0.049 12.7 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 HTH_7 PF02796.15 gi|449066886|ref|YP_007433968.1| - 0.049 13.7 0.1 0.14 12.3 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_22 PF13309.6 gi|449066886|ref|YP_007433968.1| - 0.055 13.6 0.2 0.13 12.4 0.2 1.7 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.19 gi|449066886|ref|YP_007433968.1| - 0.057 13.6 0.4 0.13 12.5 0.4 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|449066886|ref|YP_007433968.1| - 0.15 11.7 0.0 0.33 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2023 PF09633.10 gi|449066886|ref|YP_007433968.1| - 0.16 12.1 1.0 3.1 8.0 0.0 2.5 2 1 0 3 3 3 0 Protein of unknown function (DUF2023) HTH_10 PF04967.12 gi|449066886|ref|YP_007433968.1| - 0.28 11.0 2.5 0.69 9.8 0.7 2.4 3 0 0 3 3 3 0 HTH DNA binding domain DUF5405 PF17399.2 gi|449066887|ref|YP_007433969.1| - 0.0015 18.8 0.0 0.0017 18.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5405) AAA PF00004.29 gi|449066888|ref|YP_007433970.1| - 1.1e-76 255.6 0.0 2.9e-37 128.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|449066888|ref|YP_007433970.1| - 4.6e-16 59.0 0.0 7.5e-09 35.5 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|449066888|ref|YP_007433970.1| - 3.5e-14 53.3 3.5 0.0067 16.7 0.0 5.0 4 2 0 6 6 4 3 AAA domain AAA_5 PF07728.14 gi|449066888|ref|YP_007433970.1| - 1.3e-13 51.2 0.3 6.1e-05 23.0 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|449066888|ref|YP_007433970.1| - 1.1e-12 48.6 0.0 6.3e-05 23.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|449066888|ref|YP_007433970.1| - 5.7e-12 45.8 0.0 6.7e-06 26.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|449066888|ref|YP_007433970.1| - 5.8e-12 46.0 0.0 4.4e-05 23.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|449066888|ref|YP_007433970.1| - 8.6e-12 44.9 0.3 0.0001 21.6 0.1 2.6 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_16 PF13191.6 gi|449066888|ref|YP_007433970.1| - 1.4e-11 45.1 0.4 4.9e-05 23.8 0.0 3.7 2 2 1 3 3 3 2 AAA ATPase domain DUF815 PF05673.13 gi|449066888|ref|YP_007433970.1| - 1.4e-11 44.1 0.0 3.3e-05 23.2 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_lid_3 PF17862.1 gi|449066888|ref|YP_007433970.1| - 7.3e-10 38.5 0.0 0.00092 19.0 0.0 3.1 3 0 0 3 3 2 2 AAA+ lid domain IstB_IS21 PF01695.17 gi|449066888|ref|YP_007433970.1| - 3.5e-09 36.7 0.0 0.0018 18.0 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_2 PF07724.14 gi|449066888|ref|YP_007433970.1| - 4.1e-09 36.8 0.0 4.3e-05 23.7 0.0 2.9 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.22 gi|449066888|ref|YP_007433970.1| - 8.8e-09 35.7 0.0 0.0032 17.8 0.0 3.2 3 0 0 3 3 2 2 RNA helicase AAA_28 PF13521.6 gi|449066888|ref|YP_007433970.1| - 2.1e-08 34.6 0.0 0.0078 16.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|449066888|ref|YP_007433970.1| - 2.3e-08 34.0 0.0 0.0029 17.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|449066888|ref|YP_007433970.1| - 3.1e-08 33.4 0.1 0.007 15.9 0.1 3.1 2 1 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|449066888|ref|YP_007433970.1| - 6e-08 32.2 0.0 0.002 17.4 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin Cytidylate_kin PF02224.18 gi|449066888|ref|YP_007433970.1| - 1.3e-07 31.6 0.1 0.018 14.8 0.0 2.4 2 0 0 2 2 2 2 Cytidylate kinase Vps4_C PF09336.10 gi|449066888|ref|YP_007433970.1| - 3.2e-07 30.2 0.1 0.0067 16.4 0.0 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain TsaE PF02367.17 gi|449066888|ref|YP_007433970.1| - 5.4e-07 29.7 0.0 0.023 14.7 0.0 2.3 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|449066888|ref|YP_007433970.1| - 9.6e-07 28.4 0.0 0.036 13.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|449066888|ref|YP_007433970.1| - 1.1e-06 27.9 0.1 0.039 13.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|449066888|ref|YP_007433970.1| - 2.8e-06 27.9 0.0 0.1 13.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Sigma54_activ_2 PF14532.6 gi|449066888|ref|YP_007433970.1| - 5.2e-06 26.6 0.0 0.11 12.6 0.0 3.5 2 1 0 2 2 2 2 Sigma-54 interaction domain SKI PF01202.22 gi|449066888|ref|YP_007433970.1| - 7.8e-06 26.1 0.0 0.19 11.8 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase TniB PF05621.11 gi|449066888|ref|YP_007433970.1| - 9.3e-06 25.2 2.4 0.057 12.8 0.0 4.1 4 0 0 4 4 4 1 Bacterial TniB protein AAA_19 PF13245.6 gi|449066888|ref|YP_007433970.1| - 1.4e-05 25.4 0.2 0.67 10.3 0.0 3.5 2 1 0 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|449066888|ref|YP_007433970.1| - 1.9e-05 24.5 0.0 0.2 11.5 0.0 2.9 2 1 1 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|449066888|ref|YP_007433970.1| - 2.3e-05 24.8 0.0 0.12 12.8 0.0 2.9 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|449066888|ref|YP_007433970.1| - 3.3e-05 23.9 0.0 0.43 10.5 0.0 3.3 3 1 0 3 3 3 2 Rad17 P-loop domain CPT PF07931.12 gi|449066888|ref|YP_007433970.1| - 3.9e-05 23.6 0.0 0.11 12.3 0.0 2.3 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|449066888|ref|YP_007433970.1| - 5.2e-05 23.0 0.1 0.52 10.0 0.1 2.9 2 1 0 2 2 2 2 AAA domain Bac_DnaA PF00308.18 gi|449066888|ref|YP_007433970.1| - 5.5e-05 23.1 0.0 0.068 13.0 0.0 3.2 2 1 0 2 2 2 1 Bacterial dnaA protein AAA_11 PF13086.6 gi|449066888|ref|YP_007433970.1| - 5.7e-05 23.0 0.0 0.21 11.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain KTI12 PF08433.10 gi|449066888|ref|YP_007433970.1| - 5.9e-05 22.6 0.0 0.3 10.5 0.0 2.7 2 0 0 2 2 2 2 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|449066888|ref|YP_007433970.1| - 6.3e-05 23.0 1.4 0.64 9.9 0.0 4.0 4 1 1 5 5 4 2 NTPase ATPase_2 PF01637.18 gi|449066888|ref|YP_007433970.1| - 8.1e-05 22.6 0.5 0.55 10.1 0.1 3.5 2 2 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|449066888|ref|YP_007433970.1| - 0.00014 21.5 2.0 1.2 8.7 0.1 3.7 4 0 0 4 4 3 2 AAA domain Sigma54_activat PF00158.26 gi|449066888|ref|YP_007433970.1| - 0.00016 21.5 0.0 1.2 8.8 0.0 3.1 4 0 0 4 4 2 2 Sigma-54 interaction domain AAA_6 PF12774.7 gi|449066888|ref|YP_007433970.1| - 0.00016 20.8 0.0 0.22 10.4 0.0 2.2 2 0 0 2 2 2 2 Hydrolytic ATP binding site of dynein motor region ATPase PF06745.13 gi|449066888|ref|YP_007433970.1| - 0.00018 21.0 3.0 2.6 7.3 0.1 4.3 2 2 2 4 4 4 0 KaiC NACHT PF05729.12 gi|449066888|ref|YP_007433970.1| - 0.00023 21.1 0.6 0.95 9.4 0.0 3.2 3 1 1 4 4 3 2 NACHT domain PhoH PF02562.16 gi|449066888|ref|YP_007433970.1| - 0.00028 20.4 0.1 0.47 9.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein RsgA_GTPase PF03193.16 gi|449066888|ref|YP_007433970.1| - 0.00054 19.9 0.0 1.5 8.7 0.0 2.8 2 0 0 2 2 2 1 RsgA GTPase NB-ARC PF00931.22 gi|449066888|ref|YP_007433970.1| - 0.00091 18.5 0.0 2 7.5 0.0 3.3 4 0 0 4 4 3 1 NB-ARC domain IPT PF01745.16 gi|449066888|ref|YP_007433970.1| - 0.0011 18.4 0.0 0.33 10.3 0.0 2.4 2 0 0 2 2 2 1 Isopentenyl transferase PduV-EutP PF10662.9 gi|449066888|ref|YP_007433970.1| - 0.0015 18.3 0.0 2 8.1 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ResIII PF04851.15 gi|449066888|ref|YP_007433970.1| - 0.002 18.1 0.0 3.5 7.6 0.0 2.8 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit MMR_HSR1 PF01926.23 gi|449066888|ref|YP_007433970.1| - 0.0021 18.2 0.0 3.1 7.9 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Guanylate_kin PF00625.21 gi|449066888|ref|YP_007433970.1| - 0.003 17.3 0.0 2.8 7.6 0.0 2.8 2 0 0 2 2 2 0 Guanylate kinase Hydin_ADK PF17213.3 gi|449066888|ref|YP_007433970.1| - 0.0035 17.7 0.1 2 8.6 0.0 2.4 2 0 0 2 2 2 1 Hydin Adenylate kinase-like domain AAA_23 PF13476.6 gi|449066888|ref|YP_007433970.1| - 0.0043 17.6 0.6 5 7.6 0.1 2.9 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|449066888|ref|YP_007433970.1| - 0.0046 16.2 0.0 1 8.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.14 gi|449066888|ref|YP_007433970.1| - 0.0047 16.2 0.7 2.7 7.1 0.0 3.4 2 2 2 4 4 4 0 KAP family P-loop domain 6PF2K PF01591.18 gi|449066888|ref|YP_007433970.1| - 0.005 16.2 0.0 0.16 11.2 0.0 2.4 2 0 0 2 2 2 1 6-phosphofructo-2-kinase APS_kinase PF01583.20 gi|449066888|ref|YP_007433970.1| - 0.006 16.5 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 1 Adenylylsulphate kinase Adeno_IVa2 PF02456.15 gi|449066888|ref|YP_007433970.1| - 0.0061 15.4 0.1 2.2 7.0 0.0 2.3 2 0 0 2 2 2 1 Adenovirus IVa2 protein Cytidylate_kin2 PF13189.6 gi|449066888|ref|YP_007433970.1| - 0.0089 16.2 0.0 1.6 8.8 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family T2SSE PF00437.20 gi|449066888|ref|YP_007433970.1| - 0.0091 15.1 0.0 2.1 7.3 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein PPV_E1_C PF00519.17 gi|449066888|ref|YP_007433970.1| - 0.011 14.6 0.0 3.4 6.4 0.0 2.3 2 0 0 2 2 2 0 Papillomavirus helicase Roc PF08477.13 gi|449066888|ref|YP_007433970.1| - 0.014 15.7 0.0 6.4 7.0 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ADK PF00406.22 gi|449066888|ref|YP_007433970.1| - 0.015 15.4 0.0 11 6.1 0.0 3.2 3 0 0 3 3 3 0 Adenylate kinase SRP54 PF00448.22 gi|449066888|ref|YP_007433970.1| - 0.015 14.9 0.1 5.6 6.5 0.0 2.7 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|449066888|ref|YP_007433970.1| - 0.016 14.9 0.1 4.1 7.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain dNK PF01712.19 gi|449066888|ref|YP_007433970.1| - 0.018 14.9 0.1 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 Deoxynucleoside kinase Torsin PF06309.11 gi|449066888|ref|YP_007433970.1| - 0.026 14.6 0.0 4.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Torsin MCM PF00493.23 gi|449066888|ref|YP_007433970.1| - 0.029 13.5 0.1 4.5 6.3 0.0 3.0 3 0 0 3 3 3 0 MCM P-loop domain SRPRB PF09439.10 gi|449066888|ref|YP_007433970.1| - 0.087 12.3 0.0 17 4.8 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Viral_helicase1 PF01443.18 gi|449066888|ref|YP_007433970.1| - 0.11 12.3 0.0 17 5.1 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CLP1_P PF16575.5 gi|449066888|ref|YP_007433970.1| - 0.12 12.1 0.0 19 5.0 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_21 PF13304.6 gi|449066888|ref|YP_007433970.1| - 0.13 12.1 5.0 4.9 6.9 0.5 3.1 2 2 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Gtr1_RagA PF04670.12 gi|449066888|ref|YP_007433970.1| - 0.14 11.5 0.2 19 4.5 0.0 2.9 3 0 0 3 3 2 0 Gtr1/RagA G protein conserved region ATP-synt_ab PF00006.25 gi|449066888|ref|YP_007433970.1| - 0.15 11.7 0.0 12 5.5 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2540 PF10802.8 gi|449066888|ref|YP_007433970.1| - 0.29 11.2 3.6 12 6.0 0.5 3.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2540) SPW PF03779.14 gi|449066889|ref|YP_007433971.1| - 0.0032 17.0 1.6 0.0032 17.0 1.6 2.7 3 0 0 3 3 3 1 SPW repeat ABC_tran PF00005.27 gi|449066891|ref|YP_007433973.1| - 3.8e-30 105.2 0.1 1.6e-14 54.6 0.0 3.3 2 1 1 3 3 3 3 ABC transporter AAA_21 PF13304.6 gi|449066891|ref|YP_007433973.1| - 3.5e-15 56.6 8.3 0.0007 19.5 0.0 4.3 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|449066891|ref|YP_007433973.1| - 5.5e-08 33.2 0.0 0.0046 17.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|449066891|ref|YP_007433973.1| - 1.5e-07 30.9 0.1 0.005 16.0 0.1 2.5 2 0 0 2 2 2 2 NB-ARC domain SRP54 PF00448.22 gi|449066891|ref|YP_007433973.1| - 2.7e-06 27.2 0.7 0.0081 15.8 0.2 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|449066891|ref|YP_007433973.1| - 4.7e-06 26.3 0.2 0.019 14.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|449066891|ref|YP_007433973.1| - 5.3e-06 26.3 0.2 0.069 12.9 0.0 2.8 3 0 0 3 3 2 2 AAA domain SMC_N PF02463.19 gi|449066891|ref|YP_007433973.1| - 1e-05 25.1 4.8 0.096 12.1 0.1 3.8 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|449066891|ref|YP_007433973.1| - 1.6e-05 25.1 0.0 0.065 13.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|449066891|ref|YP_007433973.1| - 2e-05 25.0 2.2 0.026 15.0 0.1 3.1 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|449066891|ref|YP_007433973.1| - 5e-05 23.3 1.8 0.098 12.6 0.0 2.6 2 1 0 2 2 2 2 NACHT domain AAA_7 PF12775.7 gi|449066891|ref|YP_007433973.1| - 6.1e-05 22.6 0.0 0.32 10.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_14 PF13173.6 gi|449066891|ref|YP_007433973.1| - 6.3e-05 23.0 2.9 0.054 13.5 0.1 3.3 2 2 0 2 2 2 2 AAA domain MobB PF03205.14 gi|449066891|ref|YP_007433973.1| - 7e-05 22.7 3.3 0.21 11.5 0.2 2.7 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|449066891|ref|YP_007433973.1| - 8.7e-05 22.5 0.6 0.053 13.4 0.0 2.5 2 1 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|449066891|ref|YP_007433973.1| - 0.00011 22.6 0.0 0.53 10.6 0.0 2.5 3 0 0 3 3 2 2 AAA ATPase domain Roc PF08477.13 gi|449066891|ref|YP_007433973.1| - 0.00012 22.2 0.0 0.17 12.1 0.0 2.5 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|449066891|ref|YP_007433973.1| - 0.00013 21.9 4.4 0.26 11.2 0.3 3.6 2 1 1 3 3 3 2 NTPase Zeta_toxin PF06414.12 gi|449066891|ref|YP_007433973.1| - 0.00025 20.4 0.0 0.069 12.4 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_30 PF13604.6 gi|449066891|ref|YP_007433973.1| - 0.00025 20.8 0.1 0.56 9.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|449066891|ref|YP_007433973.1| - 0.00025 20.9 17.3 0.006 16.3 0.3 3.2 1 1 2 3 3 3 1 AAA ATPase domain TsaE PF02367.17 gi|449066891|ref|YP_007433973.1| - 0.00026 21.0 0.1 0.95 9.5 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|449066891|ref|YP_007433973.1| - 0.00029 21.4 10.3 0.24 11.9 6.3 2.9 1 1 1 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|449066891|ref|YP_007433973.1| - 0.00031 20.7 2.2 0.26 11.2 0.0 2.7 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea cobW PF02492.19 gi|449066891|ref|YP_007433973.1| - 0.0004 20.0 0.5 0.066 12.8 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|449066891|ref|YP_007433973.1| - 0.00041 20.4 2.7 0.23 11.6 0.0 2.7 2 1 0 2 2 2 2 50S ribosome-binding GTPase Pox_A32 PF04665.12 gi|449066891|ref|YP_007433973.1| - 0.00045 19.8 0.2 0.58 9.6 0.0 2.5 2 1 0 2 2 2 2 Poxvirus A32 protein AAA_19 PF13245.6 gi|449066891|ref|YP_007433973.1| - 0.00078 19.8 0.4 2.5 8.4 0.0 3.3 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|449066891|ref|YP_007433973.1| - 0.0013 19.1 0.0 0.75 10.2 0.0 2.8 2 0 0 2 2 2 1 RNA helicase Viral_helicase1 PF01443.18 gi|449066891|ref|YP_007433973.1| - 0.0025 17.6 0.0 1.1 9.0 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|449066891|ref|YP_007433973.1| - 0.0027 18.2 3.6 1.2 9.7 0.1 2.7 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|449066891|ref|YP_007433973.1| - 0.0033 17.4 0.1 1.9 8.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|449066891|ref|YP_007433973.1| - 0.0041 16.9 1.0 2.5 7.8 0.0 2.8 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|449066891|ref|YP_007433973.1| - 0.0095 15.1 0.0 0.75 8.9 0.0 2.3 2 0 0 2 2 2 1 G-protein alpha subunit AAA_17 PF13207.6 gi|449066891|ref|YP_007433973.1| - 0.016 15.6 1.3 1.6 9.1 0.0 2.9 3 1 0 3 3 2 0 AAA domain AAA_25 PF13481.6 gi|449066891|ref|YP_007433973.1| - 0.026 14.1 0.0 3.7 7.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|449066891|ref|YP_007433973.1| - 0.033 14.4 0.0 2.8 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|449066891|ref|YP_007433973.1| - 0.048 13.2 0.0 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.9 gi|449066891|ref|YP_007433973.1| - 0.051 12.5 0.2 2 7.2 0.0 2.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain VirE PF05272.11 gi|449066891|ref|YP_007433973.1| - 0.064 13.0 0.0 3.4 7.3 0.0 2.4 2 0 0 2 2 2 0 Virulence-associated protein E Septin PF00735.18 gi|449066891|ref|YP_007433973.1| - 0.078 12.2 2.8 5.3 6.2 0.2 2.8 3 1 0 3 3 3 0 Septin PhoH PF02562.16 gi|449066891|ref|YP_007433973.1| - 0.086 12.3 0.1 1.3 8.5 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein IstB_IS21 PF01695.17 gi|449066891|ref|YP_007433973.1| - 0.088 12.5 0.1 7.3 6.3 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|449066891|ref|YP_007433973.1| - 0.19 12.0 0.0 1.1 9.6 0.0 2.2 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF4752 PF15944.5 gi|449066892|ref|YP_007433974.1| - 0.061 13.4 2.1 0.2 11.8 0.1 2.8 2 2 1 3 3 3 0 Domain of unknown function (DUF4752) DUF5486 PF17588.2 gi|449066892|ref|YP_007433974.1| - 0.1 12.5 0.2 0.23 11.4 0.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5486) HTH_45 PF14947.6 gi|449066893|ref|YP_007433975.1| - 2.6e-28 97.8 5.4 3.1e-28 97.6 5.4 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|449066893|ref|YP_007433975.1| - 0.00018 21.3 0.4 0.0002 21.2 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Topoisom_bac PF01131.20 gi|449066893|ref|YP_007433975.1| - 0.015 14.3 0.3 0.019 14.0 0.3 1.1 1 0 0 1 1 1 0 DNA topoisomerase DUF2119 PF09892.9 gi|449066893|ref|YP_007433975.1| - 0.018 14.4 0.3 0.022 14.1 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) DUF505 PF04458.12 gi|449066893|ref|YP_007433975.1| - 0.019 13.4 1.8 0.021 13.2 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Ammonium_transp PF00909.21 gi|449066894|ref|YP_007433976.1| - 2.4e-94 316.3 25.0 2.8e-94 316.1 25.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Metallophos PF00149.28 gi|449066895|ref|YP_007433977.1| - 6.3e-26 92.1 1.1 8.9e-26 91.7 1.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|449066895|ref|YP_007433977.1| - 5.2e-06 26.8 0.0 7.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MR_MLE_C PF13378.6 gi|449066896|ref|YP_007433978.1| - 1.2e-54 185.2 0.0 1.8e-54 184.6 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|449066896|ref|YP_007433978.1| - 5.1e-15 55.7 0.0 9.7e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Sugar_tr PF00083.24 gi|449066897|ref|YP_007433979.1| - 1.2e-54 185.9 23.7 1.6e-54 185.5 23.7 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449066897|ref|YP_007433979.1| - 2.1e-30 105.8 37.0 1.7e-25 89.7 32.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sterol-sensing PF12349.8 gi|449066897|ref|YP_007433979.1| - 0.28 11.0 5.9 1.6 8.5 0.0 2.7 2 0 0 2 2 2 0 Sterol-sensing domain of SREBP cleavage-activation BT1 PF03092.16 gi|449066897|ref|YP_007433979.1| - 0.6 8.3 10.1 0.15 10.3 4.2 2.3 2 1 0 2 2 2 0 BT1 family Usp PF00582.26 gi|449066898|ref|YP_007433980.1| - 3.4e-26 92.4 0.3 4.8e-26 92.0 0.3 1.2 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.20 gi|449066899|ref|YP_007433981.1| - 1.1e-55 189.4 0.1 1.3e-55 189.2 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|449066899|ref|YP_007433981.1| - 2.1e-15 57.2 0.0 2.9e-10 40.2 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|449066899|ref|YP_007433981.1| - 0.008 15.5 0.0 0.014 14.7 0.0 1.4 1 1 0 1 1 1 1 Adenosine/AMP deaminase SNCAIP_SNCA_bd PF16700.5 gi|449066899|ref|YP_007433981.1| - 0.062 13.0 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Synphilin-1 alpha-Synuclein-binding domain UPF0147 PF03685.13 gi|449066900|ref|YP_007433982.1| - 4.6e-37 125.9 2.2 5.1e-37 125.8 2.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|449066900|ref|YP_007433982.1| - 0.012 15.9 0.1 0.22 11.8 0.0 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) HEAT_2 PF13646.6 gi|449066900|ref|YP_007433982.1| - 0.036 14.4 0.2 0.098 13.1 0.2 1.7 1 1 0 1 1 1 0 HEAT repeats Auto_anti-p27 PF06677.12 gi|449066901|ref|YP_007433983.1| - 1.8e-14 53.6 0.2 2.6e-14 53.1 0.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF592 PF04574.13 gi|449066901|ref|YP_007433983.1| - 0.021 14.6 1.0 0.028 14.2 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF592) DNA_ligase_ZBD PF03119.16 gi|449066901|ref|YP_007433983.1| - 0.13 12.3 0.5 0.26 11.3 0.5 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Thymidylate_kin PF02223.17 gi|449066902|ref|YP_007433984.1| - 5.6e-41 140.3 0.1 6.5e-41 140.0 0.1 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|449066902|ref|YP_007433984.1| - 2.2e-06 27.7 4.3 7.5e-05 22.7 0.7 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase AAA_18 PF13238.6 gi|449066902|ref|YP_007433984.1| - 4.2e-05 24.1 0.0 0.00012 22.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|449066902|ref|YP_007433984.1| - 0.0026 18.0 0.0 0.0043 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|449066902|ref|YP_007433984.1| - 0.0033 17.5 0.2 0.4 10.8 0.1 2.1 2 0 0 2 2 2 1 Shikimate kinase Gtr1_RagA PF04670.12 gi|449066902|ref|YP_007433984.1| - 0.019 14.3 1.7 0.41 10.0 0.1 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_33 PF13671.6 gi|449066902|ref|YP_007433984.1| - 0.045 13.9 0.0 0.49 10.5 0.0 2.5 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|449066902|ref|YP_007433984.1| - 0.049 12.8 0.1 0.089 12.0 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.6 gi|449066902|ref|YP_007433984.1| - 0.05 14.0 0.2 4.6 7.7 0.0 2.6 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|449066902|ref|YP_007433984.1| - 0.19 12.3 0.7 0.56 10.7 0.6 2.0 1 1 0 1 1 1 0 ABC transporter CLP1_P PF16575.5 gi|449066903|ref|YP_007433985.1| - 1.3e-24 87.1 0.0 1.8e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MMR_HSR1 PF01926.23 gi|449066903|ref|YP_007433985.1| - 0.11 12.5 0.2 0.25 11.4 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|449066905|ref|YP_007433987.1| - 3.5e-07 30.1 0.1 4.9e-07 29.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|449066905|ref|YP_007433987.1| - 0.00011 21.6 0.5 0.0066 15.8 0.1 2.0 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.6 gi|449066905|ref|YP_007433987.1| - 0.0018 17.9 0.0 0.14 11.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|449066905|ref|YP_007433987.1| - 0.0055 16.2 0.0 0.0075 15.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|449066905|ref|YP_007433987.1| - 0.0073 16.7 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|449066905|ref|YP_007433987.1| - 0.0082 16.6 0.1 0.011 16.2 0.1 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|449066905|ref|YP_007433987.1| - 0.017 15.7 0.1 0.024 15.1 0.1 1.3 1 1 0 1 1 1 0 ABC transporter DUF2075 PF09848.9 gi|449066905|ref|YP_007433987.1| - 0.017 14.4 0.1 0.023 13.9 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|449066905|ref|YP_007433987.1| - 0.024 13.9 0.7 0.15 11.3 0.7 2.2 1 1 0 1 1 1 0 Rad51 RNA_helicase PF00910.22 gi|449066905|ref|YP_007433987.1| - 0.027 14.9 0.1 0.051 14.0 0.1 1.6 1 1 0 1 1 1 0 RNA helicase MOZART2 PF12926.7 gi|449066905|ref|YP_007433987.1| - 0.029 14.0 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated Delta_lysin PF05372.11 gi|449066905|ref|YP_007433987.1| - 0.034 13.4 0.8 0.1 11.9 0.8 1.8 1 0 0 1 1 1 0 Delta lysin family NYD-SP12_N PF15015.6 gi|449066905|ref|YP_007433987.1| - 0.084 11.2 0.1 0.096 11.0 0.1 1.0 1 0 0 1 1 1 0 Spermatogenesis-associated, N-terminal AAA_18 PF13238.6 gi|449066905|ref|YP_007433987.1| - 0.085 13.4 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|449066905|ref|YP_007433987.1| - 0.085 13.1 1.2 0.63 10.3 1.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|449066905|ref|YP_007433987.1| - 0.12 12.2 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|449066905|ref|YP_007433987.1| - 0.2 11.4 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain CarS-like PF01864.17 gi|449066906|ref|YP_007433988.1| - 5.4e-41 140.5 9.0 2.9e-40 138.1 9.0 1.8 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|449066906|ref|YP_007433988.1| - 0.0034 17.2 2.4 0.0034 17.2 2.4 2.0 2 0 0 2 2 2 1 Cytidylyltransferase family DUF347 PF03988.12 gi|449066906|ref|YP_007433988.1| - 0.03 14.5 0.1 0.03 14.5 0.1 2.8 3 1 0 3 3 3 0 Repeat of Unknown Function (DUF347) Acyl_transf_3 PF01757.22 gi|449066907|ref|YP_007433989.1| - 0.013 14.6 8.2 0.015 14.4 8.2 1.1 1 0 0 1 1 1 0 Acyltransferase family MHC2-interact PF09307.10 gi|449066907|ref|YP_007433989.1| - 0.096 12.7 0.3 0.18 11.8 0.3 1.4 1 0 0 1 1 1 0 CLIP, MHC2 interacting DUF3112 PF11309.8 gi|449066907|ref|YP_007433989.1| - 0.15 11.5 15.2 0.2 11.1 3.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3112) MARVEL PF01284.23 gi|449066907|ref|YP_007433989.1| - 1 9.4 11.2 1.3 9.1 11.2 1.1 1 0 0 1 1 1 0 Membrane-associating domain S_4TM PF18159.1 gi|449066907|ref|YP_007433989.1| - 7.7 5.7 8.6 0.97 8.7 1.2 2.0 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain DUF997 PF06196.12 gi|449066907|ref|YP_007433989.1| - 8.9 6.4 12.9 0.53 10.3 5.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF997) FumaraseC_C PF10415.9 gi|449066908|ref|YP_007433990.1| - 0.059 13.8 0.1 0.086 13.3 0.1 1.2 1 0 0 1 1 1 0 Fumarase C C-terminus MCM PF00493.23 gi|449066909|ref|YP_007433991.1| - 2.5e-97 324.4 0.0 4.5e-97 323.5 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|449066909|ref|YP_007433991.1| - 1.8e-33 115.1 0.0 3.1e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|449066909|ref|YP_007433991.1| - 3.8e-28 97.8 0.4 8.3e-28 96.6 0.4 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|449066909|ref|YP_007433991.1| - 7.6e-18 65.0 1.0 2e-17 63.7 1.0 1.7 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|449066909|ref|YP_007433991.1| - 5.5e-08 32.9 0.0 1.4e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|449066909|ref|YP_007433991.1| - 1.1e-06 28.2 0.1 0.00011 21.7 0.1 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|449066909|ref|YP_007433991.1| - 1.7e-05 24.7 0.0 3.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|449066909|ref|YP_007433991.1| - 2.5e-05 24.0 0.1 0.00037 20.3 0.1 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF4325 PF14213.6 gi|449066909|ref|YP_007433991.1| - 0.0012 18.5 0.3 0.006 16.3 0.1 2.4 2 0 0 2 2 2 1 STAS-like domain of unknown function (DUF4325) EAP30 PF04157.16 gi|449066909|ref|YP_007433991.1| - 0.0071 15.7 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 EAP30/Vps36 family DUF3987 PF13148.6 gi|449066909|ref|YP_007433991.1| - 0.025 13.6 0.0 3.3 6.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) ANT PF03374.14 gi|449066909|ref|YP_007433991.1| - 0.062 13.6 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain Fe_dep_repress PF01325.19 gi|449066909|ref|YP_007433991.1| - 0.15 12.3 0.1 0.44 10.8 0.1 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HEPN PF05168.14 gi|449066909|ref|YP_007433991.1| - 0.65 10.1 3.2 2.1 8.5 0.1 2.8 3 0 0 3 3 2 0 HEPN domain Sld5 PF05916.11 gi|449066910|ref|YP_007433992.1| - 1.1e-10 41.9 0.9 1.5e-10 41.5 0.9 1.2 1 0 0 1 1 1 1 GINS complex protein DUF5622 PF18533.1 gi|449066910|ref|YP_007433992.1| - 0.051 13.7 0.5 0.11 12.7 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5622) THUMP PF02926.17 gi|449066911|ref|YP_007433993.1| - 4.2e-10 39.9 0.8 5.4e-10 39.5 0.8 1.2 1 0 0 1 1 1 1 THUMP domain Cdc6_C PF09079.11 gi|449066912|ref|YP_007433994.1| - 1.3e-16 60.4 0.0 4.4e-16 58.6 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|449066912|ref|YP_007433994.1| - 4.1e-15 56.3 0.1 9.4e-15 55.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|449066912|ref|YP_007433994.1| - 0.00013 21.4 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|449066912|ref|YP_007433994.1| - 0.0045 17.4 0.7 0.094 13.1 0.2 2.8 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|449066912|ref|YP_007433994.1| - 0.0056 15.9 0.0 0.011 15.0 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.12 gi|449066912|ref|YP_007433994.1| - 0.043 13.7 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|449066912|ref|YP_007433994.1| - 0.072 12.6 0.0 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AIG1 PF04548.16 gi|449066912|ref|YP_007433994.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 AIG1 family DUF2075 PF09848.9 gi|449066912|ref|YP_007433994.1| - 0.18 11.0 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TrmB PF01978.19 gi|449066913|ref|YP_007433995.1| - 0.00042 20.1 0.3 0.0005 19.9 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|449066913|ref|YP_007433995.1| - 0.0011 19.2 0.1 0.0014 18.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.6 gi|449066913|ref|YP_007433995.1| - 0.015 15.3 0.2 0.019 14.9 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Urocanase_N PF17391.2 gi|449066913|ref|YP_007433995.1| - 0.015 15.0 0.0 0.017 14.8 0.0 1.0 1 0 0 1 1 1 0 Urocanase N-terminal domain FtsK_gamma PF09397.10 gi|449066913|ref|YP_007433995.1| - 0.046 13.5 0.1 0.066 13.0 0.1 1.3 1 0 0 1 1 1 0 Ftsk gamma domain MarR PF01047.22 gi|449066913|ref|YP_007433995.1| - 0.046 13.7 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 MarR family MoaC PF01967.21 gi|449066914|ref|YP_007433996.1| - 4e-49 166.2 2.6 4.5e-49 166.0 2.6 1.0 1 0 0 1 1 1 1 MoaC family AAA PF00004.29 gi|449066915|ref|YP_007433997.1| - 2.5e-18 66.8 0.5 9.4e-17 61.7 0.0 3.0 2 2 1 4 4 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|449066915|ref|YP_007433997.1| - 6.5e-11 42.2 0.0 1.4e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|449066915|ref|YP_007433997.1| - 5.2e-08 33.0 0.0 2.1e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|449066915|ref|YP_007433997.1| - 1.2e-07 31.8 0.3 5.9e-06 26.3 0.0 2.7 2 1 0 2 2 2 1 Rad17 P-loop domain DUF815 PF05673.13 gi|449066915|ref|YP_007433997.1| - 4.9e-07 29.2 0.1 1.9e-06 27.3 0.0 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|449066915|ref|YP_007433997.1| - 8e-07 29.2 0.0 7.6e-06 26.0 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|449066915|ref|YP_007433997.1| - 8.5e-07 29.5 0.0 3.3e-06 27.6 0.0 2.2 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|449066915|ref|YP_007433997.1| - 3.5e-06 27.3 0.1 7.9e-05 23.0 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|449066915|ref|YP_007433997.1| - 5.3e-06 26.7 0.1 2.1e-05 24.7 0.0 2.1 2 0 0 2 2 1 1 AAA C-terminal domain AAA_18 PF13238.6 gi|449066915|ref|YP_007433997.1| - 9.7e-06 26.2 0.4 7.3e-05 23.3 0.0 2.7 4 0 0 4 4 1 1 AAA domain AAA_17 PF13207.6 gi|449066915|ref|YP_007433997.1| - 5.2e-05 23.7 0.0 0.00076 19.9 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_2 PF07724.14 gi|449066915|ref|YP_007433997.1| - 0.00017 21.8 0.0 0.0013 18.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|449066915|ref|YP_007433997.1| - 0.00021 21.1 0.0 0.00076 19.3 0.0 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|449066915|ref|YP_007433997.1| - 0.00032 20.3 0.0 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|449066915|ref|YP_007433997.1| - 0.00045 20.4 0.0 0.0017 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|449066915|ref|YP_007433997.1| - 0.00071 19.9 0.0 0.0028 18.0 0.0 2.1 2 0 0 2 2 1 1 RNA helicase NACHT PF05729.12 gi|449066915|ref|YP_007433997.1| - 0.00085 19.3 0.2 0.029 14.3 0.0 3.1 3 1 1 4 4 3 1 NACHT domain AAA_24 PF13479.6 gi|449066915|ref|YP_007433997.1| - 0.00086 19.1 0.0 0.0026 17.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|449066915|ref|YP_007433997.1| - 0.0013 19.0 0.0 0.0076 16.5 0.0 2.3 3 0 0 3 3 2 1 AAA domain NB-ARC PF00931.22 gi|449066915|ref|YP_007433997.1| - 0.0015 17.8 0.0 0.0039 16.4 0.0 1.7 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|449066915|ref|YP_007433997.1| - 0.0018 18.2 3.4 0.0023 17.9 0.1 2.9 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|449066915|ref|YP_007433997.1| - 0.0018 18.8 0.1 0.035 14.6 0.0 2.9 3 0 0 3 3 3 1 ABC transporter AFG1_ATPase PF03969.16 gi|449066915|ref|YP_007433997.1| - 0.0056 15.6 0.1 5.3 5.8 0.0 3.1 3 0 0 3 3 3 0 AFG1-like ATPase Parvo_NS1 PF01057.17 gi|449066915|ref|YP_007433997.1| - 0.0074 15.4 0.0 0.084 11.9 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|449066915|ref|YP_007433997.1| - 0.0078 16.2 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|449066915|ref|YP_007433997.1| - 0.0087 16.0 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase TniB PF05621.11 gi|449066915|ref|YP_007433997.1| - 0.011 15.1 0.0 0.67 9.3 0.0 3.2 2 1 1 3 3 3 0 Bacterial TniB protein ATPase PF06745.13 gi|449066915|ref|YP_007433997.1| - 0.011 15.0 0.1 0.33 10.3 0.0 2.9 4 0 0 4 4 3 0 KaiC RFC1 PF08519.12 gi|449066915|ref|YP_007433997.1| - 0.015 15.4 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Replication factor RFC1 C terminal domain DNA_pol3_delta PF06144.13 gi|449066915|ref|YP_007433997.1| - 0.017 14.9 0.2 0.38 10.5 0.0 2.8 3 0 0 3 3 3 0 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 gi|449066915|ref|YP_007433997.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|449066915|ref|YP_007433997.1| - 0.021 14.8 0.0 0.32 10.9 0.0 2.6 2 1 0 2 2 2 0 NTPase DNA_pol3_delta2 PF13177.6 gi|449066915|ref|YP_007433997.1| - 0.033 14.0 0.0 1 9.1 0.0 2.7 2 1 1 3 3 3 0 DNA polymerase III, delta subunit TIP49 PF06068.13 gi|449066915|ref|YP_007433997.1| - 0.039 13.2 0.0 0.07 12.3 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain Sigma54_activat PF00158.26 gi|449066915|ref|YP_007433997.1| - 0.046 13.4 0.0 0.14 11.9 0.0 1.8 1 1 1 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|449066915|ref|YP_007433997.1| - 0.053 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_3 PF07726.11 gi|449066915|ref|YP_007433997.1| - 0.071 13.0 0.0 0.23 11.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|449066915|ref|YP_007433997.1| - 0.08 13.1 0.0 0.31 11.1 0.0 2.0 1 1 1 2 2 2 0 Sigma-54 interaction domain MMR_HSR1 PF01926.23 gi|449066915|ref|YP_007433997.1| - 0.13 12.3 0.0 0.4 10.8 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|449066915|ref|YP_007433997.1| - 0.16 12.3 0.1 1.2 9.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|449066915|ref|YP_007433997.1| - 0.18 11.6 0.6 0.87 9.3 0.0 2.2 3 0 0 3 3 3 0 AAA domain Hydin_ADK PF17213.3 gi|449066915|ref|YP_007433997.1| - 0.28 11.4 0.8 0.69 10.2 0.0 1.9 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain AAA_23 PF13476.6 gi|449066915|ref|YP_007433997.1| - 0.39 11.2 0.0 0.39 11.2 0.0 2.9 2 2 1 3 3 2 0 AAA domain DUF5341 PF17276.2 gi|449066915|ref|YP_007433997.1| - 1.3 9.2 3.4 0.9 9.7 0.1 2.3 2 2 0 2 2 2 0 Family of unknown function (DUF5341) Rep_fac_C PF08542.11 gi|449066916|ref|YP_007433998.1| - 2.9e-23 82.1 1.3 1.1e-22 80.2 0.1 2.5 3 1 0 3 3 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|449066916|ref|YP_007433998.1| - 1.4e-16 61.2 0.0 3.2e-16 59.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|449066916|ref|YP_007433998.1| - 4.6e-14 52.5 0.1 1.4e-09 37.9 0.2 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|449066916|ref|YP_007433998.1| - 1.9e-07 31.0 0.0 6.4e-07 29.2 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|449066916|ref|YP_007433998.1| - 5.1e-07 29.8 0.0 1.2e-06 28.5 0.0 1.8 2 0 0 2 2 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|449066916|ref|YP_007433998.1| - 1.1e-06 28.8 0.3 4.4e-05 23.5 0.0 2.4 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|449066916|ref|YP_007433998.1| - 1.1e-05 25.6 0.0 0.0001 22.4 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|449066916|ref|YP_007433998.1| - 1.1e-05 25.8 0.3 0.094 13.0 0.0 3.0 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|449066916|ref|YP_007433998.1| - 1.1e-05 25.9 0.0 0.019 15.3 0.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain AAA_3 PF07726.11 gi|449066916|ref|YP_007433998.1| - 1.5e-05 24.9 0.0 2.7e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|449066916|ref|YP_007433998.1| - 3.5e-05 24.4 0.0 0.0002 21.9 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|449066916|ref|YP_007433998.1| - 4.5e-05 23.3 0.0 0.0002 21.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|449066916|ref|YP_007433998.1| - 6.4e-05 22.3 0.0 0.00049 19.4 0.0 2.2 1 1 0 1 1 1 1 TIP49 P-loop domain DNA_pol3_delta PF06144.13 gi|449066916|ref|YP_007433998.1| - 0.0001 22.1 0.1 0.00031 20.5 0.1 1.8 1 0 0 1 1 1 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|449066916|ref|YP_007433998.1| - 0.00029 20.6 0.0 0.00051 19.8 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_assoc_2 PF16193.5 gi|449066916|ref|YP_007433998.1| - 0.00062 20.1 0.0 0.0018 18.6 0.0 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_11 PF13086.6 gi|449066916|ref|YP_007433998.1| - 0.00079 19.3 0.0 0.0015 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|449066916|ref|YP_007433998.1| - 0.00089 19.0 0.0 0.0075 16.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|449066916|ref|YP_007433998.1| - 0.0009 19.2 0.2 0.0018 18.2 0.1 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|449066916|ref|YP_007433998.1| - 0.00092 18.7 0.1 0.064 12.7 0.0 2.3 1 1 1 2 2 2 1 Bacterial TniB protein AAA_7 PF12775.7 gi|449066916|ref|YP_007433998.1| - 0.0018 17.9 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|449066916|ref|YP_007433998.1| - 0.0019 18.2 0.0 0.009 16.0 0.0 2.2 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|449066916|ref|YP_007433998.1| - 0.0019 17.6 0.0 0.12 11.8 0.0 2.4 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.18 gi|449066916|ref|YP_007433998.1| - 0.0033 16.8 0.0 0.039 13.3 0.0 2.6 3 1 1 4 4 4 1 FtsK/SpoIIIE family PhoH PF02562.16 gi|449066916|ref|YP_007433998.1| - 0.0046 16.4 0.0 0.35 10.3 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein DUF815 PF05673.13 gi|449066916|ref|YP_007433998.1| - 0.0049 16.1 0.0 0.0079 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|449066916|ref|YP_007433998.1| - 0.0076 16.6 0.2 0.19 12.1 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|449066916|ref|YP_007433998.1| - 0.0096 16.1 0.2 0.025 14.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|449066916|ref|YP_007433998.1| - 0.0096 15.2 0.1 0.08 12.2 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|449066916|ref|YP_007433998.1| - 0.0097 15.0 0.0 0.019 14.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|449066916|ref|YP_007433998.1| - 0.011 15.3 0.7 0.044 13.4 0.3 2.2 2 2 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|449066916|ref|YP_007433998.1| - 0.014 15.1 0.0 0.38 10.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Phage_T4_Ndd PF06591.11 gi|449066916|ref|YP_007433998.1| - 0.017 14.9 0.1 0.053 13.3 0.0 1.8 1 1 1 2 2 2 0 T4-like phage nuclear disruption protein (Ndd) Viral_helicase1 PF01443.18 gi|449066916|ref|YP_007433998.1| - 0.02 14.6 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.10 gi|449066916|ref|YP_007433998.1| - 0.027 13.9 0.0 0.079 12.4 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|449066916|ref|YP_007433998.1| - 0.031 14.5 0.0 0.082 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|449066916|ref|YP_007433998.1| - 0.04 14.3 0.0 0.18 12.2 0.0 2.2 2 1 0 2 2 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|449066916|ref|YP_007433998.1| - 0.051 13.7 0.1 0.4 10.8 0.1 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain DEAD PF00270.29 gi|449066916|ref|YP_007433998.1| - 0.073 12.8 0.7 14 5.4 0.0 2.7 2 1 1 3 3 2 0 DEAD/DEAH box helicase NTPase_1 PF03266.15 gi|449066916|ref|YP_007433998.1| - 0.092 12.6 0.6 0.73 9.7 0.0 2.5 2 1 1 3 3 2 0 NTPase PBP PF01161.20 gi|449066917|ref|YP_007433999.1| - 4.1e-34 117.7 0.0 4.8e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DNAPolymera_Pol PF11590.8 gi|449066917|ref|YP_007433999.1| - 0.2 11.6 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase catalytic subunit Pol Proteasome PF00227.26 gi|449066918|ref|YP_007434000.1| - 6.9e-52 175.7 0.3 7.8e-52 175.5 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit TGF_beta_GS PF08515.12 gi|449066918|ref|YP_007434000.1| - 0.42 10.2 2.7 0.7 9.4 0.2 2.3 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif Amidase PF01425.21 gi|449066919|ref|YP_007434001.1| - 1.7e-85 287.7 0.5 1.7e-83 281.1 0.5 2.0 1 1 0 1 1 1 1 Amidase ADH_N PF08240.12 gi|449066920|ref|YP_007434002.1| - 2.3e-27 95.0 0.1 4.4e-27 94.1 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449066920|ref|YP_007434002.1| - 6.1e-21 74.8 0.1 9.1e-21 74.2 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449066920|ref|YP_007434002.1| - 7.7e-10 39.9 0.0 1.4e-09 39.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase LDcluster4 PF18306.1 gi|449066920|ref|YP_007434002.1| - 4.5e-05 23.1 0.8 7.5e-05 22.4 0.8 1.3 1 0 0 1 1 1 1 SLOG cluster4 family AlaDh_PNT_C PF01262.21 gi|449066920|ref|YP_007434002.1| - 0.0075 15.6 1.5 0.013 14.8 1.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Eno-Rase_NADH_b PF12242.8 gi|449066920|ref|YP_007434002.1| - 0.013 15.2 0.8 0.025 14.3 0.8 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E1-N PF14463.6 gi|449066920|ref|YP_007434002.1| - 0.021 14.6 0.1 0.047 13.5 0.1 1.5 1 0 0 1 1 1 0 E1 N-terminal domain Biotin_carb_N PF00289.22 gi|449066920|ref|YP_007434002.1| - 0.13 12.8 0.0 0.34 11.5 0.0 1.7 1 0 0 1 1 1 0 Biotin carboxylase, N-terminal domain Rep_fac_C PF08542.11 gi|449066922|ref|YP_007434004.1| - 0.065 13.6 0.5 0.17 12.3 0.5 1.7 1 1 0 1 1 1 0 Replication factor C C-terminal domain TP_methylase PF00590.20 gi|449066923|ref|YP_007434005.1| - 1.8e-47 162.1 0.2 2.2e-47 161.8 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases YHS PF04945.13 gi|449066924|ref|YP_007434006.1| - 2.3e-20 72.4 2.9 2.5e-20 72.3 2.9 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|449066924|ref|YP_007434006.1| - 2.1e-05 24.8 2.1 2.7e-05 24.4 2.1 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|449066924|ref|YP_007434006.1| - 0.00025 20.9 1.1 0.0003 20.6 1.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|449066924|ref|YP_007434006.1| - 0.00048 19.7 0.1 0.00053 19.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF2116 PF09889.9 gi|449066924|ref|YP_007434006.1| - 0.069 13.2 0.2 0.31 11.1 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NosL PF05573.12 gi|449066924|ref|YP_007434006.1| - 0.093 13.1 0.2 0.096 13.0 0.2 1.1 1 0 0 1 1 1 0 NosL FAD_binding_5 PF00941.21 gi|449066925|ref|YP_007434007.1| - 4.6e-48 163.2 0.0 6.8e-48 162.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|449066925|ref|YP_007434007.1| - 7.6e-28 96.7 0.3 1.1e-27 96.1 0.3 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 gi|449066926|ref|YP_007434008.1| - 1.9e-34 117.5 0.7 1.2e-33 115.0 0.0 2.1 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|449066926|ref|YP_007434008.1| - 3.6e-07 30.1 1.0 3.6e-07 30.1 1.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|449066926|ref|YP_007434008.1| - 0.00024 21.1 0.8 0.00049 20.1 0.8 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NTP_transf_3 PF12804.7 gi|449066927|ref|YP_007434009.1| - 1.2e-33 116.8 0.0 1.5e-33 116.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|449066927|ref|YP_007434009.1| - 2.6e-07 30.6 0.0 4.3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|449066927|ref|YP_007434009.1| - 0.00076 18.7 0.1 0.0011 18.3 0.1 1.3 1 1 0 1 1 1 1 Guanylyl transferase CofC like CTP_transf_3 PF02348.19 gi|449066927|ref|YP_007434009.1| - 0.0078 16.2 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.23 gi|449066927|ref|YP_007434009.1| - 0.086 12.4 0.0 0.16 11.5 0.0 1.5 1 1 0 1 1 1 0 Nucleotidyl transferase COXG PF06240.13 gi|449066928|ref|YP_007434010.1| - 1.5e-40 138.2 0.1 1.6e-40 138.1 0.1 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|449066928|ref|YP_007434010.1| - 8.6e-05 22.8 0.0 0.00013 22.1 0.0 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF4923 PF16270.5 gi|449066928|ref|YP_007434010.1| - 0.031 14.1 0.0 13 5.5 0.0 2.8 1 1 2 3 3 3 0 Lipocalin-like domain (DUF4923) Polyketide_cyc2 PF10604.9 gi|449066928|ref|YP_007434010.1| - 0.13 12.5 0.0 0.15 12.3 0.0 1.3 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport GTP_EFTU PF00009.27 gi|449066929|ref|YP_007434011.1| - 1.3e-22 80.3 0.0 2.4e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|449066929|ref|YP_007434011.1| - 4.6e-06 26.9 0.1 1.3e-05 25.5 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|449066929|ref|YP_007434011.1| - 1.4e-05 25.1 0.0 6.7e-05 22.9 0.0 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|449066929|ref|YP_007434011.1| - 8.4e-05 22.3 0.7 3.3 7.4 0.0 3.4 2 1 1 3 3 3 3 Ethanolamine utilisation - propanediol utilisation GTP_EFTU_D2 PF03144.25 gi|449066929|ref|YP_007434011.1| - 0.0022 18.3 2.5 0.0043 17.4 1.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|449066929|ref|YP_007434011.1| - 0.0024 17.8 0.8 0.31 10.9 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase AlbA_2 PF04326.14 gi|449066929|ref|YP_007434011.1| - 0.047 14.0 4.6 0.36 11.2 0.1 3.2 3 1 1 4 4 4 0 Putative DNA-binding domain zf-ZPR1 PF03367.13 gi|449066930|ref|YP_007434012.1| - 1.5e-26 93.2 0.0 4.1e-26 91.7 0.0 1.6 1 1 0 1 1 1 1 ZPR1 zinc-finger domain ArsA_HSP20 PF17886.1 gi|449066931|ref|YP_007434013.1| - 3.1e-11 42.6 0.0 4.7e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|449066931|ref|YP_007434013.1| - 2.8e-10 40.2 1.6 8.9e-09 35.4 1.6 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1_CS PF18201.1 gi|449066931|ref|YP_007434013.1| - 0.046 14.1 0.0 0.067 13.6 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain DUF3788 PF12663.7 gi|449066931|ref|YP_007434013.1| - 0.047 13.7 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3788) DAHP_snth_FXD PF18152.1 gi|449066931|ref|YP_007434013.1| - 0.13 12.1 1.9 0.16 11.9 0.3 2.1 2 1 0 2 2 2 0 DAHP synthase ferredoxin-like domain Glyoxalase_4 PF13669.6 gi|449066932|ref|YP_007434014.1| - 2.6e-21 75.9 0.0 3.1e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|449066932|ref|YP_007434014.1| - 2.3e-10 40.9 0.0 2.7e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|449066932|ref|YP_007434014.1| - 2.1e-09 37.6 0.0 4.7e-09 36.5 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_5 PF14696.6 gi|449066932|ref|YP_007434014.1| - 0.064 13.4 0.0 0.11 12.7 0.0 1.4 1 1 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal MM_CoA_mutase PF01642.22 gi|449066933|ref|YP_007434015.1| - 7.5e-212 704.4 0.0 8.5e-212 704.2 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|449066933|ref|YP_007434015.1| - 0.032 12.7 0.1 0.044 12.3 0.1 1.2 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) Pribosyltran PF00156.27 gi|449066934|ref|YP_007434016.1| - 2.7e-23 82.3 0.1 3.7e-23 81.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Phosphodiest PF01663.22 gi|449066935|ref|YP_007434017.1| - 2.7e-17 63.4 5.0 9.9e-17 61.5 4.7 1.8 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|449066935|ref|YP_007434017.1| - 1.1e-07 32.1 1.2 1.9e-07 31.4 0.1 2.0 2 1 0 2 2 2 1 PglZ domain Metalloenzyme PF01676.18 gi|449066935|ref|YP_007434017.1| - 5.6e-05 22.6 0.5 8.3e-05 22.1 0.1 1.5 2 0 0 2 2 2 1 Metalloenzyme superfamily Amino_oxidase PF01593.24 gi|449066937|ref|YP_007434019.1| - 1.1e-15 57.8 0.0 4.3e-15 56.0 0.0 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|449066937|ref|YP_007434019.1| - 1.7e-15 57.5 0.0 1.4e-14 54.4 0.0 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|449066937|ref|YP_007434019.1| - 1.5e-13 50.7 0.3 5.4e-13 49.0 0.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|449066937|ref|YP_007434019.1| - 1.8e-10 40.5 0.1 7.2e-06 25.4 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449066937|ref|YP_007434019.1| - 9.6e-10 38.9 1.5 0.0001 22.8 0.3 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|449066937|ref|YP_007434019.1| - 7.1e-08 31.9 1.7 0.00079 18.6 0.9 2.6 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|449066937|ref|YP_007434019.1| - 1.2e-07 31.2 1.0 1.4e-06 27.7 0.3 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|449066937|ref|YP_007434019.1| - 5e-06 25.5 0.4 0.00054 18.8 0.2 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|449066937|ref|YP_007434019.1| - 6.5e-06 25.8 0.2 2.6e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|449066937|ref|YP_007434019.1| - 5.5e-05 22.6 0.1 0.00011 21.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|449066937|ref|YP_007434019.1| - 8.6e-05 21.8 2.2 0.0035 16.5 0.6 2.5 2 0 0 2 2 2 1 Glucose inhibited division protein A GDI PF00996.18 gi|449066937|ref|YP_007434019.1| - 0.00048 18.8 0.2 0.58 8.6 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor Trp_halogenase PF04820.14 gi|449066937|ref|YP_007434019.1| - 0.0044 15.9 1.1 0.047 12.5 0.3 2.2 2 0 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|449066937|ref|YP_007434019.1| - 0.0059 15.7 0.3 0.1 11.6 0.1 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein XdhC_C PF13478.6 gi|449066937|ref|YP_007434019.1| - 0.073 13.6 0.0 2.7 8.5 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_9 PF13454.6 gi|449066937|ref|YP_007434019.1| - 0.09 12.8 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|449066937|ref|YP_007434019.1| - 0.092 12.0 0.7 0.51 9.5 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase YjeF_N PF03853.15 gi|449066937|ref|YP_007434019.1| - 0.13 12.1 0.1 7.8 6.3 0.1 3.0 2 1 0 2 2 2 0 YjeF-related protein N-terminus 2-Hacid_dh_C PF02826.19 gi|449066937|ref|YP_007434019.1| - 0.18 11.1 1.1 8.3 5.7 0.3 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAA PF00004.29 gi|449066938|ref|YP_007434020.1| - 4e-84 279.7 0.0 8.7e-41 139.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|449066938|ref|YP_007434020.1| - 9.9e-27 92.5 5.1 1.6e-14 53.4 0.8 2.9 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|449066938|ref|YP_007434020.1| - 1.1e-16 61.4 0.0 7.2e-09 36.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|449066938|ref|YP_007434020.1| - 8.6e-14 51.7 0.0 1.4e-06 28.3 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_5 PF07728.14 gi|449066938|ref|YP_007434020.1| - 1.4e-12 47.8 0.5 2.9e-05 24.1 0.6 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|449066938|ref|YP_007434020.1| - 3.9e-12 46.9 0.1 0.00047 20.6 0.1 4.4 3 2 0 4 4 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|449066938|ref|YP_007434020.1| - 1.3e-11 44.5 0.0 2e-05 24.4 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|449066938|ref|YP_007434020.1| - 5.2e-11 43.0 3.1 0.00062 20.1 0.0 5.0 3 2 1 4 4 3 2 AAA domain AAA_18 PF13238.6 gi|449066938|ref|YP_007434020.1| - 2e-10 41.3 0.0 0.0003 21.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|449066938|ref|YP_007434020.1| - 1.2e-09 37.9 0.0 3.2e-05 23.3 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|449066938|ref|YP_007434020.1| - 2e-09 37.7 0.0 0.00031 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|449066938|ref|YP_007434020.1| - 2.8e-09 36.8 0.1 1.8e-05 24.7 0.0 3.2 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.22 gi|449066938|ref|YP_007434020.1| - 7.2e-09 36.0 0.0 0.004 17.5 0.0 3.2 2 1 0 2 2 2 2 RNA helicase Rad17 PF03215.15 gi|449066938|ref|YP_007434020.1| - 1.8e-08 34.5 0.2 0.013 15.5 0.0 3.2 2 2 0 2 2 2 2 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|449066938|ref|YP_007434020.1| - 6.1e-08 32.6 0.0 0.011 15.5 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_17 PF13207.6 gi|449066938|ref|YP_007434020.1| - 1.1e-07 32.4 0.2 0.017 15.5 0.0 3.4 3 0 0 3 3 2 2 AAA domain AAA_3 PF07726.11 gi|449066938|ref|YP_007434020.1| - 1.4e-07 31.4 0.1 0.0018 18.1 0.2 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|449066938|ref|YP_007434020.1| - 5.6e-07 30.0 0.0 0.05 13.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|449066938|ref|YP_007434020.1| - 8.4e-07 29.0 0.0 0.011 15.7 0.1 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|449066938|ref|YP_007434020.1| - 2.9e-06 27.3 0.7 0.17 11.8 0.1 3.5 2 1 1 3 3 3 2 NACHT domain Mg_chelatase PF01078.21 gi|449066938|ref|YP_007434020.1| - 4.5e-06 26.2 3.5 0.0093 15.4 0.5 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|449066938|ref|YP_007434020.1| - 6.6e-06 25.8 0.0 0.1 12.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|449066938|ref|YP_007434020.1| - 8.1e-06 25.5 1.3 0.097 12.2 0.6 3.3 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|449066938|ref|YP_007434020.1| - 1.5e-05 24.8 0.8 0.061 13.0 0.1 3.2 3 1 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.18 gi|449066938|ref|YP_007434020.1| - 7.6e-05 22.6 0.0 0.17 11.6 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|449066938|ref|YP_007434020.1| - 0.00011 22.8 0.1 0.39 11.2 0.0 2.9 2 1 0 2 2 2 1 ABC transporter ResIII PF04851.15 gi|449066938|ref|YP_007434020.1| - 0.00013 22.0 0.1 0.97 9.4 0.0 3.2 2 2 1 3 3 3 1 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 gi|449066938|ref|YP_007434020.1| - 0.00014 21.6 0.1 0.99 9.1 0.0 3.3 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_30 PF13604.6 gi|449066938|ref|YP_007434020.1| - 0.00021 21.1 0.3 0.96 9.1 0.1 3.1 3 1 0 3 3 2 2 AAA domain AFG1_ATPase PF03969.16 gi|449066938|ref|YP_007434020.1| - 0.00023 20.2 0.0 0.48 9.2 0.0 2.5 2 0 0 2 2 2 2 AFG1-like ATPase DUF815 PF05673.13 gi|449066938|ref|YP_007434020.1| - 0.0004 19.6 0.0 0.67 9.1 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|449066938|ref|YP_007434020.1| - 0.00044 19.7 0.3 1.7 7.9 0.0 3.1 2 1 0 2 2 2 2 KaiC ATPase_2 PF01637.18 gi|449066938|ref|YP_007434020.1| - 0.001 19.1 2.6 0.077 12.9 0.0 3.5 3 2 0 3 3 2 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|449066938|ref|YP_007434020.1| - 0.0016 17.8 0.1 0.27 10.5 0.0 2.8 2 0 0 2 2 2 1 Zeta toxin Bac_DnaA PF00308.18 gi|449066938|ref|YP_007434020.1| - 0.0019 18.0 0.0 2.3 8.0 0.0 3.0 3 0 0 3 3 3 1 Bacterial dnaA protein Guanylate_kin PF00625.21 gi|449066938|ref|YP_007434020.1| - 0.0021 17.7 0.2 2.4 7.8 0.1 3.6 3 1 1 4 4 3 1 Guanylate kinase Sigma54_activ_2 PF14532.6 gi|449066938|ref|YP_007434020.1| - 0.0022 18.1 0.0 3.4 7.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|449066938|ref|YP_007434020.1| - 0.0025 17.6 0.0 3.4 7.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|449066938|ref|YP_007434020.1| - 0.0027 17.1 0.3 1.5 8.2 0.1 3.5 3 0 0 3 3 3 1 Bacterial TniB protein AAA_6 PF12774.7 gi|449066938|ref|YP_007434020.1| - 0.0032 16.5 0.0 0.91 8.4 0.1 2.6 2 1 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region NB-ARC PF00931.22 gi|449066938|ref|YP_007434020.1| - 0.0032 16.7 0.1 1.5 8.0 0.1 2.7 2 0 0 2 2 2 1 NB-ARC domain dNK PF01712.19 gi|449066938|ref|YP_007434020.1| - 0.0082 16.0 0.9 2.8 7.7 0.1 3.5 3 1 1 4 4 3 0 Deoxynucleoside kinase Glutaredoxin PF00462.24 gi|449066938|ref|YP_007434020.1| - 0.0099 16.1 0.0 0.047 13.9 0.0 2.2 2 0 0 2 2 1 1 Glutaredoxin SKI PF01202.22 gi|449066938|ref|YP_007434020.1| - 0.011 15.9 0.5 2 8.5 0.4 2.9 2 1 0 2 2 2 0 Shikimate kinase ATP-synt_ab PF00006.25 gi|449066938|ref|YP_007434020.1| - 0.011 15.4 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain KTI12 PF08433.10 gi|449066938|ref|YP_007434020.1| - 0.012 15.1 0.2 3.3 7.1 0.0 3.8 4 0 0 4 4 4 0 Chromatin associated protein KTI12 MFS_Mycoplasma PF07672.13 gi|449066938|ref|YP_007434020.1| - 0.014 14.7 0.8 0.022 14.0 0.8 1.2 1 0 0 1 1 1 0 Mycoplasma MFS transporter Cytidylate_kin PF02224.18 gi|449066938|ref|YP_007434020.1| - 0.015 15.0 0.0 1 9.0 0.0 2.9 2 0 0 2 2 2 0 Cytidylate kinase MMR_HSR1 PF01926.23 gi|449066938|ref|YP_007434020.1| - 0.019 15.0 0.1 5.2 7.2 0.0 3.5 3 1 0 3 3 3 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|449066938|ref|YP_007434020.1| - 0.019 14.9 0.2 2.1 8.2 0.1 2.9 2 1 1 3 3 2 0 NTPase Hydin_ADK PF17213.3 gi|449066938|ref|YP_007434020.1| - 0.022 15.1 0.1 1.3 9.3 0.1 2.9 3 0 0 3 3 2 0 Hydin Adenylate kinase-like domain Parvo_NS1 PF01057.17 gi|449066938|ref|YP_007434020.1| - 0.023 13.8 0.0 4.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|449066938|ref|YP_007434020.1| - 0.026 14.9 1.5 6.6 7.1 0.0 3.0 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|449066938|ref|YP_007434020.1| - 0.033 13.9 0.1 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|449066938|ref|YP_007434020.1| - 0.039 13.4 0.1 4.8 6.6 0.0 3.3 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit Adeno_IVa2 PF02456.15 gi|449066938|ref|YP_007434020.1| - 0.045 12.6 0.3 0.87 8.3 0.0 2.7 3 0 0 3 3 3 0 Adenovirus IVa2 protein Cytidylate_kin2 PF13189.6 gi|449066938|ref|YP_007434020.1| - 0.052 13.7 0.0 19 5.4 0.0 2.9 2 0 0 2 2 2 0 Cytidylate kinase-like family CPT PF07931.12 gi|449066938|ref|YP_007434020.1| - 0.063 13.1 0.0 4.4 7.1 0.1 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.9 gi|449066938|ref|YP_007434020.1| - 0.066 12.4 0.0 8.8 5.4 0.0 2.4 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.6 gi|449066938|ref|YP_007434020.1| - 0.075 12.8 0.0 19 5.1 0.0 2.6 3 0 0 3 3 2 0 P-loop containing region of AAA domain Zwilch PF09817.9 gi|449066938|ref|YP_007434020.1| - 0.083 11.3 0.4 0.15 10.4 0.4 1.3 1 0 0 1 1 1 0 RZZ complex, subunit zwilch PPV_E1_C PF00519.17 gi|449066938|ref|YP_007434020.1| - 0.088 11.6 0.2 6.8 5.4 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase DUF3139 PF11337.8 gi|449066938|ref|YP_007434020.1| - 0.11 13.2 3.0 0.32 11.7 3.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) SRP54 PF00448.22 gi|449066938|ref|YP_007434020.1| - 0.53 9.9 2.4 37 3.9 0.0 3.6 3 1 0 3 3 3 0 SRP54-type protein, GTPase domain Inositol_P PF00459.25 gi|449066939|ref|YP_007434021.1| - 3.5e-21 75.9 0.0 4.7e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|449066939|ref|YP_007434021.1| - 4.4e-05 23.0 0.2 7.1e-05 22.4 0.2 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Pyr_redox_2 PF07992.14 gi|449066940|ref|YP_007434022.1| - 4.1e-51 174.0 1.2 4.9e-51 173.7 1.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449066940|ref|YP_007434022.1| - 6.9e-26 91.2 4.8 1.1e-25 90.5 0.7 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449066940|ref|YP_007434022.1| - 5.6e-15 55.7 3.6 8.1e-15 55.2 0.6 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|449066940|ref|YP_007434022.1| - 3.9e-06 25.8 0.1 0.015 14.0 0.0 3.4 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|449066940|ref|YP_007434022.1| - 6.6e-05 22.2 10.6 0.054 12.6 1.2 4.4 2 2 3 5 5 5 2 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|449066940|ref|YP_007434022.1| - 0.00024 20.4 0.1 0.55 9.3 0.0 3.2 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|449066940|ref|YP_007434022.1| - 0.00033 19.9 2.2 0.69 8.9 0.0 3.1 2 1 1 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|449066940|ref|YP_007434022.1| - 0.00071 19.0 2.4 0.038 13.4 0.0 2.7 3 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|449066940|ref|YP_007434022.1| - 0.0034 17.8 0.7 0.031 14.7 0.2 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.17 gi|449066940|ref|YP_007434022.1| - 0.0091 15.3 0.7 0.96 8.6 0.0 2.6 3 0 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.6 gi|449066940|ref|YP_007434022.1| - 0.16 11.9 0.1 3 7.8 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding DUF4346 PF14251.6 gi|449066941|ref|YP_007434023.1| - 1.7e-06 28.0 0.4 1.5e-05 25.0 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Baculo_p26 PF04766.12 gi|449066941|ref|YP_007434023.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus p26 protein PTPS PF01242.19 gi|449066943|ref|YP_007434025.1| - 1.1e-21 77.1 0.0 1.4e-21 76.7 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF4826 PF16108.5 gi|449066943|ref|YP_007434025.1| - 0.074 13.3 0.0 0.095 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4826) Ribosomal_S30AE PF02482.19 gi|449066944|ref|YP_007434026.1| - 0.012 16.4 0.2 0.026 15.3 0.2 1.6 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein FlgN PF05130.12 gi|449066944|ref|YP_007434026.1| - 0.093 13.2 1.7 0.36 11.3 1.7 1.9 1 1 0 1 1 1 0 FlgN protein HEPN PF05168.14 gi|449066946|ref|YP_007434028.1| - 0.01 15.9 1.2 0.022 14.9 1.2 1.5 1 1 0 1 1 1 0 HEPN domain MAF_flag10 PF01973.18 gi|449066948|ref|YP_007434030.1| - 5.6e-24 84.7 0.1 8.7e-24 84.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|449066948|ref|YP_007434030.1| - 0.012 15.7 0.1 0.027 14.5 0.1 1.5 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain HMGL-like PF00682.19 gi|449066949|ref|YP_007434031.1| - 3.1e-91 305.6 0.2 4.5e-91 305.1 0.2 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|449066949|ref|YP_007434031.1| - 0.13 11.7 0.1 1.4 8.3 0.1 2.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel EF-hand_14 PF17959.1 gi|449066949|ref|YP_007434031.1| - 0.15 12.4 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain Lactamase_B_3 PF13483.6 gi|449066950|ref|YP_007434032.1| - 2.4e-34 118.6 0.1 3e-34 118.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|449066950|ref|YP_007434032.1| - 1.2e-13 51.0 2.3 7.3e-10 38.7 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain RHH_1 PF01402.21 gi|449066951|ref|YP_007434033.1| - 1.3e-10 40.9 0.5 1.7e-10 40.4 0.5 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|449066951|ref|YP_007434033.1| - 3.1e-07 30.3 1.1 4.5e-07 29.7 0.5 1.5 1 1 1 2 2 2 1 Ribbon-helix-helix domain RHH_5 PF07878.11 gi|449066952|ref|YP_007434034.1| - 5.5e-05 23.0 0.0 9.6e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 CopG_antitoxin PF12441.8 gi|449066952|ref|YP_007434034.1| - 0.0043 17.6 0.8 0.0093 16.5 0.0 1.8 2 0 0 2 2 2 1 CopG antitoxin of type II toxin-antitoxin system SAM_Exu PF18609.1 gi|449066952|ref|YP_007434034.1| - 0.39 10.8 3.1 0.72 10.0 3.1 1.5 1 0 0 1 1 1 0 Exuperantia SAM-like domain AsnC_trans_reg PF01037.21 gi|449066953|ref|YP_007434035.1| - 4e-10 39.5 0.2 4.6e-10 39.3 0.2 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain DUF3829 PF12889.7 gi|449066953|ref|YP_007434035.1| - 0.041 13.4 0.0 0.049 13.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) DapH_N PF08503.10 gi|449066953|ref|YP_007434035.1| - 0.044 14.0 0.1 0.055 13.7 0.1 1.1 1 0 0 1 1 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal ABC2_membrane_3 PF12698.7 gi|449066954|ref|YP_007434036.1| - 2.4e-22 79.5 43.2 2.9e-22 79.2 43.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|449066954|ref|YP_007434036.1| - 1.3e-05 25.3 11.0 1.3e-05 25.3 11.0 3.4 2 1 1 3 3 3 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|449066954|ref|YP_007434036.1| - 2.1e-05 24.0 39.7 0.00011 21.7 39.7 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2754 PF10953.8 gi|449066954|ref|YP_007434036.1| - 0.025 14.8 7.5 1.3 9.3 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2754) ABC2_membrane_5 PF13346.6 gi|449066954|ref|YP_007434036.1| - 1.7 8.2 36.7 2.1 7.8 30.7 3.1 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|449066955|ref|YP_007434037.1| - 1.1e-25 90.8 0.0 1.6e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449066955|ref|YP_007434037.1| - 5.9e-12 46.0 1.4 9.7e-06 25.6 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|449066955|ref|YP_007434037.1| - 0.00015 22.4 1.5 0.00026 21.6 1.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|449066955|ref|YP_007434037.1| - 0.00016 21.5 0.0 0.00018 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|449066955|ref|YP_007434037.1| - 0.00079 19.2 0.0 0.00099 18.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|449066955|ref|YP_007434037.1| - 0.0053 16.2 0.3 0.26 10.7 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|449066955|ref|YP_007434037.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|449066955|ref|YP_007434037.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|449066955|ref|YP_007434037.1| - 0.031 14.6 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|449066955|ref|YP_007434037.1| - 0.038 13.9 0.0 0.077 12.9 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|449066955|ref|YP_007434037.1| - 0.074 12.7 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|449066955|ref|YP_007434037.1| - 0.078 13.4 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|449066955|ref|YP_007434037.1| - 0.081 12.0 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|449066955|ref|YP_007434037.1| - 0.14 12.4 0.1 0.26 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain UPF0176_N PF17773.1 gi|449066956|ref|YP_007434038.1| - 0.011 16.1 0.2 0.04 14.3 0.1 2.0 2 0 0 2 2 2 0 UPF0176 acylphosphatase like domain Bromodomain PF00439.25 gi|449066956|ref|YP_007434038.1| - 0.027 14.5 0.8 0.61 10.2 0.7 2.4 2 0 0 2 2 2 0 Bromodomain Syntaxin-5_N PF11416.8 gi|449066956|ref|YP_007434038.1| - 0.031 13.5 0.2 0.12 11.6 0.0 2.0 2 0 0 2 2 2 0 Syntaxin-5 N-terminal, Sly1p-binding domain SRI PF08236.11 gi|449066956|ref|YP_007434038.1| - 0.04 14.1 0.1 0.094 12.9 0.1 1.6 1 0 0 1 1 1 0 SRI (Set2 Rpb1 interacting) domain Pantoate_transf PF02548.15 gi|449066957|ref|YP_007434039.1| - 2.9e-94 315.3 0.2 3.2e-94 315.1 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PDZ_1 PF12812.7 gi|449066957|ref|YP_007434039.1| - 0.17 11.9 0.0 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 PDZ-like domain PPS_PS PF02006.16 gi|449066958|ref|YP_007434040.1| - 6.9e-78 260.2 4.4 9.3e-78 259.8 4.4 1.2 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Arabinose_Isome PF02610.15 gi|449066958|ref|YP_007434040.1| - 0.024 13.8 0.6 0.059 12.6 0.1 1.8 2 0 0 2 2 2 0 L-arabinose isomerase TPP_enzyme_M PF00205.22 gi|449066958|ref|YP_007434040.1| - 0.028 14.2 0.5 0.54 10.0 0.1 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain GHMP_kinases_N PF00288.26 gi|449066959|ref|YP_007434041.1| - 5e-05 23.4 0.3 8.5e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain RVT_1 PF00078.27 gi|449066960|ref|YP_007434042.1| - 0.051 13.1 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) MoaE PF02391.17 gi|449066961|ref|YP_007434043.1| - 2.3e-18 66.5 0.2 3.7e-18 65.9 0.2 1.3 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|449066961|ref|YP_007434043.1| - 2e-12 47.6 0.3 2.1e-11 44.3 0.1 2.5 2 0 0 2 2 2 1 ThiS family Elongin_A PF06881.11 gi|449066961|ref|YP_007434043.1| - 0.0042 17.6 0.2 1.1 9.8 0.3 2.4 2 0 0 2 2 2 2 RNA polymerase II transcription factor SIII (Elongin) subunit A PIN_5 PF08745.11 gi|449066961|ref|YP_007434043.1| - 0.046 13.1 0.1 0.079 12.4 0.1 1.3 1 0 0 1 1 1 0 PINc domain ribonuclease Phos_pyr_kin PF08543.12 gi|449066962|ref|YP_007434044.1| - 1.5e-67 227.5 0.0 1.9e-67 227.2 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|449066962|ref|YP_007434044.1| - 2.9e-44 150.6 0.0 4.6e-44 149.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|449066962|ref|YP_007434044.1| - 1.2e-06 28.0 0.0 1.7e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|449066962|ref|YP_007434044.1| - 0.0056 16.2 0.0 0.0097 15.4 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase HD_3 PF13023.6 gi|449066963|ref|YP_007434045.1| - 3.2e-14 53.2 0.0 1.2e-13 51.3 0.0 1.8 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|449066963|ref|YP_007434045.1| - 3.3e-13 49.8 0.1 6.5e-13 48.8 0.1 1.5 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|449066963|ref|YP_007434045.1| - 4.6e-06 26.9 0.0 1.3e-05 25.4 0.0 1.8 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|449066963|ref|YP_007434045.1| - 0.00034 20.2 0.0 0.00048 19.6 0.0 1.2 1 0 0 1 1 1 1 HDOD domain zf-ZPR1 PF03367.13 gi|449066963|ref|YP_007434045.1| - 0.016 15.1 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 ZPR1 zinc-finger domain Pyrophosphatase PF00719.19 gi|449066964|ref|YP_007434046.1| - 4.6e-58 195.5 0.2 5.2e-58 195.4 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Glyco_trans_2_3 PF13632.6 gi|449066965|ref|YP_007434047.1| - 2.5e-24 86.3 0.1 4.4e-24 85.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|449066965|ref|YP_007434047.1| - 7.3e-22 78.4 0.0 9.9e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|449066965|ref|YP_007434047.1| - 7.8e-21 74.6 0.1 1.1e-20 74.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|449066965|ref|YP_007434047.1| - 1.5e-11 44.1 0.0 3.4e-10 39.7 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|449066965|ref|YP_007434047.1| - 1.6e-07 31.1 1.1 4.3e-07 29.7 1.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.14 gi|449066965|ref|YP_007434047.1| - 0.0027 16.3 1.4 0.0053 15.3 1.4 1.4 1 0 0 1 1 1 1 Cellulose synthase FIST_C PF10442.9 gi|449066965|ref|YP_007434047.1| - 0.077 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 FIST C domain Ribosomal_L6e PF01159.19 gi|449066965|ref|YP_007434047.1| - 0.083 13.4 4.0 4.1 8.0 0.0 3.2 3 0 0 3 3 3 0 Ribosomal protein L6e TGS PF02824.21 gi|449066966|ref|YP_007434048.1| - 4.2e-18 65.1 0.0 8.6e-18 64.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|449066966|ref|YP_007434048.1| - 1.4e-07 31.5 0.1 3.3e-07 30.3 0.1 1.7 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain YchF-GTPase_C PF06071.13 gi|449066966|ref|YP_007434048.1| - 0.011 15.9 0.1 1.9 8.7 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) RNase_HII PF01351.18 gi|449066967|ref|YP_007434049.1| - 5.3e-45 153.7 0.1 6e-45 153.5 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII NMD3 PF04981.13 gi|449066968|ref|YP_007434050.1| - 3.2e-43 147.9 2.0 3.6e-43 147.8 2.0 1.0 1 0 0 1 1 1 1 NMD3 family PG_binding_3 PF09374.10 gi|449066968|ref|YP_007434050.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Predicted Peptidoglycan domain DZR PF12773.7 gi|449066968|ref|YP_007434050.1| - 0.13 12.3 0.6 2.4 8.2 0.4 2.5 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|449066968|ref|YP_007434050.1| - 5.4 6.9 6.2 20 5.1 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF424 PF04242.13 gi|449066969|ref|YP_007434051.1| - 2.2e-24 85.6 1.0 2.5e-24 85.3 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) eIF-5_eIF-2B PF01873.17 gi|449066970|ref|YP_007434052.1| - 4e-31 107.3 0.3 4.9e-31 107.0 0.3 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 RNA_POL_M_15KD PF02150.16 gi|449066970|ref|YP_007434052.1| - 0.014 15.3 0.1 0.47 10.4 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit SUI1 PF01253.22 gi|449066970|ref|YP_007434052.1| - 0.016 15.7 0.0 0.029 14.9 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor SUI1 zinc_ribbon_6 PF14599.6 gi|449066970|ref|YP_007434052.1| - 0.026 14.5 0.4 0.35 10.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-ribbon Rubredoxin_2 PF18073.1 gi|449066970|ref|YP_007434052.1| - 0.05 13.3 0.2 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_S27e PF01667.17 gi|449066970|ref|YP_007434052.1| - 0.092 12.5 0.6 0.17 11.6 0.6 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Radical_SAM PF04055.21 gi|449066971|ref|YP_007434053.1| - 7.1e-26 91.6 0.3 3.8e-25 89.2 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|449066971|ref|YP_007434053.1| - 3.2e-15 55.9 0.2 5.9e-15 55.1 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|449066971|ref|YP_007434053.1| - 6.1e-06 26.1 0.1 1.3e-05 25.1 0.1 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|449066971|ref|YP_007434053.1| - 0.0074 16.4 0.1 0.11 12.7 0.0 2.5 2 0 0 2 2 2 1 TRAM domain CDC37_C PF08564.10 gi|449066971|ref|YP_007434053.1| - 0.18 11.9 2.8 1.1 9.4 0.2 2.9 3 1 0 3 3 3 0 Cdc37 C terminal domain Thiolase_N PF00108.23 gi|449066972|ref|YP_007434054.1| - 6.8e-87 291.1 0.6 8.4e-87 290.8 0.6 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449066972|ref|YP_007434054.1| - 5.4e-35 119.7 0.0 1.2e-34 118.6 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|449066972|ref|YP_007434054.1| - 2.2e-05 24.2 1.7 4.4e-05 23.2 1.6 1.6 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain eIF-1a PF01176.19 gi|449066973|ref|YP_007434055.1| - 3.8e-23 81.1 0.3 5.2e-23 80.6 0.3 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|449066974|ref|YP_007434056.1| - 3.9e-63 212.5 0.2 5.4e-63 212.0 0.2 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|449066974|ref|YP_007434056.1| - 0.0041 17.1 0.0 0.018 14.9 0.0 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|449066974|ref|YP_007434056.1| - 0.0065 15.8 0.0 0.052 12.9 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|449066974|ref|YP_007434056.1| - 0.024 13.4 0.2 0.033 13.0 0.2 1.2 1 0 0 1 1 1 0 Fungal protein kinase KH_1 PF00013.29 gi|449066975|ref|YP_007434057.1| - 0.00016 21.5 6.6 0.00055 19.7 1.6 2.4 2 0 0 2 2 2 2 KH domain DUF3883 PF13020.6 gi|449066976|ref|YP_007434058.1| - 0.0036 17.3 0.1 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) DUF1152 PF06626.12 gi|449066977|ref|YP_007434059.1| - 2e-115 385.0 0.1 2.3e-115 384.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) HHH_8 PF14716.6 gi|449066977|ref|YP_007434059.1| - 0.12 12.8 0.4 0.31 11.4 0.4 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain Cys_Met_Meta_PP PF01053.20 gi|449066980|ref|YP_007434062.1| - 3.6e-121 404.3 0.1 4.3e-121 404.1 0.1 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|449066980|ref|YP_007434062.1| - 2.9e-10 39.9 0.1 2.5e-09 36.8 0.1 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|449066980|ref|YP_007434062.1| - 8.7e-08 31.5 0.3 4.4e-07 29.2 0.3 2.0 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|449066980|ref|YP_007434062.1| - 0.007 15.7 0.0 0.1 11.9 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|449066980|ref|YP_007434062.1| - 0.018 13.5 0.2 1.1 7.7 0.2 2.1 1 1 0 1 1 1 0 Methionine gamma-lyase SelA PF03841.13 gi|449066980|ref|YP_007434062.1| - 0.029 13.4 0.2 0.3 10.0 0.2 2.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase SepSecS PF05889.13 gi|449066980|ref|YP_007434062.1| - 0.093 11.4 0.3 0.13 10.9 0.3 1.5 1 1 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS SRP54 PF00448.22 gi|449066980|ref|YP_007434062.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain GHMP_kinases_N PF00288.26 gi|449066981|ref|YP_007434063.1| - 6.7e-13 48.7 3.4 1.8e-12 47.3 3.4 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|449066981|ref|YP_007434063.1| - 2.8e-08 34.0 0.1 9.6e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal MoeA_N PF03453.17 gi|449066982|ref|YP_007434064.1| - 2.3e-35 121.7 0.0 5.4e-35 120.5 0.0 1.7 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|449066982|ref|YP_007434064.1| - 5.9e-26 90.8 0.1 1e-25 90.1 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|449066982|ref|YP_007434064.1| - 6.1e-14 52.0 0.0 1.8e-13 50.4 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) PqqD PF05402.12 gi|449066983|ref|YP_007434065.1| - 5.2e-13 49.1 0.1 6.2e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4777 PF16007.5 gi|449066983|ref|YP_007434065.1| - 0.04 14.2 0.1 0.11 12.7 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) tRNA_anti-codon PF01336.25 gi|449066984|ref|YP_007434066.1| - 1.4e-06 28.2 0.2 2.1e-06 27.6 0.2 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|449066984|ref|YP_007434066.1| - 0.0081 16.1 0.5 0.01 15.8 0.5 1.2 1 0 0 1 1 1 1 Replication protein A OB domain AAA_5 PF07728.14 gi|449066985|ref|YP_007434067.1| - 2.4e-27 95.6 0.1 8.8e-27 93.8 0.0 2.0 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|449066985|ref|YP_007434067.1| - 6.4e-07 29.2 0.4 2.2e-06 27.4 0.1 2.1 2 0 0 2 2 2 1 AAA lid domain AAA PF00004.29 gi|449066985|ref|YP_007434067.1| - 1.4e-05 25.5 0.2 0.00034 21.0 0.0 2.7 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|449066985|ref|YP_007434067.1| - 2.9e-05 24.5 0.8 7.3e-05 23.2 0.1 2.0 2 2 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|449066985|ref|YP_007434067.1| - 3.7e-05 23.2 0.1 0.00036 20.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|449066985|ref|YP_007434067.1| - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|449066985|ref|YP_007434067.1| - 0.0024 17.0 0.0 0.0083 15.3 0.0 1.8 2 0 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|449066985|ref|YP_007434067.1| - 0.0048 16.6 0.0 0.017 14.9 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|449066985|ref|YP_007434067.1| - 0.0058 16.9 0.3 0.057 13.7 0.0 2.7 2 2 0 2 2 2 1 AAA domain PMC2NT PF08066.12 gi|449066985|ref|YP_007434067.1| - 0.0085 16.8 0.2 0.03 15.0 0.2 2.0 1 0 0 1 1 1 1 PMC2NT (NUC016) domain AAA_7 PF12775.7 gi|449066985|ref|YP_007434067.1| - 0.036 13.6 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region EF-hand_14 PF17959.1 gi|449066985|ref|YP_007434067.1| - 0.039 14.3 0.2 8.3 6.8 0.0 2.6 2 0 0 2 2 2 0 EF-hand domain IstB_IS21 PF01695.17 gi|449066985|ref|YP_007434067.1| - 0.059 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|449066985|ref|YP_007434067.1| - 0.095 12.4 0.1 0.62 9.8 0.1 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain VWA PF00092.28 gi|449066986|ref|YP_007434068.1| - 6.1e-09 36.4 0.1 2e-07 31.4 0.0 2.6 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|449066986|ref|YP_007434068.1| - 8.3e-07 29.1 0.0 2e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|449066986|ref|YP_007434068.1| - 1.4e-05 25.7 0.0 0.00048 20.7 0.0 2.7 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|449066986|ref|YP_007434068.1| - 1.4e-05 24.6 0.0 3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein UvrA_DNA-bind PF17755.1 gi|449066986|ref|YP_007434068.1| - 0.00011 22.5 0.3 0.00065 20.0 0.1 2.2 1 1 1 2 2 2 1 UvrA DNA-binding domain SDH_alpha PF03313.15 gi|449066986|ref|YP_007434068.1| - 0.088 12.5 0.8 0.13 11.9 0.8 1.3 1 0 0 1 1 1 0 Serine dehydratase alpha chain DUF29 PF01724.16 gi|449066986|ref|YP_007434068.1| - 1.2 9.4 4.0 2.5 8.3 3.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF29 DUF5095 PF17016.5 gi|449066986|ref|YP_007434068.1| - 2.5 7.7 9.3 3.6 7.2 0.2 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF5095) CCG PF02754.16 gi|449066988|ref|YP_007434070.1| - 2.7e-33 114.0 0.4 5e-16 58.7 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|449066989|ref|YP_007434071.1| - 3e-32 110.9 0.1 5.3e-32 110.1 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|449066989|ref|YP_007434071.1| - 3.4e-11 43.4 2.2 3.4e-11 43.4 2.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449066989|ref|YP_007434071.1| - 3e-08 34.1 4.2 3e-08 34.1 4.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449066989|ref|YP_007434071.1| - 1.8e-06 28.0 12.0 2.2e-05 24.5 9.5 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449066989|ref|YP_007434071.1| - 2.4e-05 24.4 19.7 5.8e-05 23.1 10.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449066989|ref|YP_007434071.1| - 7e-05 22.7 16.3 0.0011 18.9 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|449066989|ref|YP_007434071.1| - 0.0001 22.5 2.6 0.13 12.4 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449066989|ref|YP_007434071.1| - 0.00053 20.5 18.0 0.0022 18.5 10.1 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449066989|ref|YP_007434071.1| - 0.001 18.8 20.6 0.0065 16.2 3.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|449066989|ref|YP_007434071.1| - 0.0011 19.9 8.7 0.0011 19.9 8.7 3.0 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|449066989|ref|YP_007434071.1| - 0.002 18.2 11.8 0.058 13.5 0.5 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|449066989|ref|YP_007434071.1| - 0.0039 17.9 3.7 1.4 9.7 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|449066989|ref|YP_007434071.1| - 0.0041 17.6 7.2 0.2 12.3 1.9 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|449066989|ref|YP_007434071.1| - 0.027 14.2 5.9 0.46 10.3 0.3 2.8 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|449066989|ref|YP_007434071.1| - 0.048 13.7 0.8 0.048 13.7 0.8 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|449066989|ref|YP_007434071.1| - 0.079 13.8 3.6 1.5 9.7 0.0 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer2 PF00111.27 gi|449066989|ref|YP_007434071.1| - 0.11 12.5 0.5 0.11 12.5 0.5 2.3 2 1 1 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Fer4_4 PF12800.7 gi|449066989|ref|YP_007434071.1| - 0.13 12.8 1.0 0.13 12.8 1.0 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|449066990|ref|YP_007434072.1| - 4.3e-110 368.7 0.3 5.2e-110 368.4 0.3 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|449066990|ref|YP_007434072.1| - 1.3e-43 148.0 0.2 2e-43 147.4 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|449066990|ref|YP_007434072.1| - 1.8e-05 24.5 1.5 0.00021 21.0 1.4 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|449066990|ref|YP_007434072.1| - 6.8e-05 22.3 0.1 0.00012 21.5 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|449066990|ref|YP_007434072.1| - 0.00028 21.1 1.0 0.0011 19.2 1.0 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|449066990|ref|YP_007434072.1| - 0.00034 19.4 1.6 0.00071 18.4 0.9 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|449066990|ref|YP_007434072.1| - 0.0014 17.9 1.3 0.0044 16.3 0.3 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|449066990|ref|YP_007434072.1| - 0.0092 15.1 2.6 0.025 13.7 2.4 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|449066990|ref|YP_007434072.1| - 0.015 14.6 1.0 0.065 12.5 0.2 2.4 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.12 gi|449066990|ref|YP_007434072.1| - 0.032 13.3 0.1 0.06 12.4 0.1 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein TMP-TENI PF02581.17 gi|449066990|ref|YP_007434072.1| - 0.078 12.3 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase Pyr_redox_3 PF13738.6 gi|449066990|ref|YP_007434072.1| - 0.099 11.9 1.3 0.12 11.6 0.2 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase_6 PF13344.6 gi|449066991|ref|YP_007434073.1| - 7.5e-23 80.6 0.0 1.5e-22 79.6 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|449066991|ref|YP_007434073.1| - 2.1e-18 66.2 0.0 5.3e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|449066991|ref|YP_007434073.1| - 9.1e-06 26.1 0.0 4.3e-05 23.9 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|449066991|ref|YP_007434073.1| - 4.7e-05 23.6 0.3 0.00018 21.6 0.0 2.1 1 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase UPF0180 PF03698.13 gi|449066991|ref|YP_007434073.1| - 0.13 12.5 0.3 1.8 8.8 0.0 2.6 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0180) DUF2070 PF09843.9 gi|449066993|ref|YP_007434075.1| - 3.1e-102 342.7 2.5 3.6e-102 342.5 2.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DAO PF01266.24 gi|449066994|ref|YP_007434076.1| - 1.9e-13 50.7 0.0 4e-07 29.9 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|449066994|ref|YP_007434076.1| - 9.3e-12 44.7 0.1 3.3e-06 26.5 0.1 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|449066994|ref|YP_007434076.1| - 1.1e-07 31.5 0.0 6.2e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|449066994|ref|YP_007434076.1| - 1.5e-07 31.0 0.1 3.7e-06 26.4 0.0 2.6 2 1 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|449066994|ref|YP_007434076.1| - 2.7e-07 30.0 0.0 6.5e-07 28.8 0.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|449066994|ref|YP_007434076.1| - 3.9e-07 30.2 0.0 3.8e-06 27.0 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|449066994|ref|YP_007434076.1| - 1.2e-06 28.0 0.0 2.3e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|449066994|ref|YP_007434076.1| - 0.00012 21.4 0.0 0.001 18.3 0.0 2.1 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|449066994|ref|YP_007434076.1| - 0.00012 21.1 0.0 0.02 13.7 0.0 2.3 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|449066994|ref|YP_007434076.1| - 0.00057 20.4 0.0 0.0024 18.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|449066994|ref|YP_007434076.1| - 0.0026 16.5 0.0 0.0044 15.8 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|449066994|ref|YP_007434076.1| - 0.0035 16.4 0.0 0.0064 15.6 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|449066994|ref|YP_007434076.1| - 0.088 12.0 0.0 0.94 8.7 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|449066994|ref|YP_007434076.1| - 0.15 11.3 0.0 0.28 10.4 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Poty_coat PF00767.18 gi|449066995|ref|YP_007434077.1| - 0.13 11.8 0.2 0.36 10.3 0.0 1.8 2 0 0 2 2 2 0 Potyvirus coat protein Metallophos_2 PF12850.7 gi|449066997|ref|YP_007434079.1| - 7e-06 26.3 0.0 8.3e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CCB1 PF12046.8 gi|449066997|ref|YP_007434079.1| - 0.0042 16.5 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 Cofactor assembly of complex C subunit B Neur_chan_memb PF02932.16 gi|449066998|ref|YP_007434080.1| - 0.074 13.1 0.8 0.074 13.1 0.8 1.6 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region DUF1275 PF06912.11 gi|449066998|ref|YP_007434080.1| - 4.8 7.1 15.1 0.5 10.3 2.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1275) Pyr_redox_2 PF07992.14 gi|449066999|ref|YP_007434081.1| - 2.9e-05 23.4 0.0 7.1e-05 22.2 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|449066999|ref|YP_007434081.1| - 7.7e-05 22.9 0.1 0.00021 21.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|449066999|ref|YP_007434081.1| - 0.00023 20.9 0.1 0.024 14.2 0.1 2.1 1 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|449066999|ref|YP_007434081.1| - 0.0042 16.2 0.0 0.0089 15.1 0.0 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|449066999|ref|YP_007434081.1| - 0.0076 15.5 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|449066999|ref|YP_007434081.1| - 0.0093 15.2 0.4 0.37 10.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|449066999|ref|YP_007434081.1| - 0.021 13.5 0.0 0.037 12.7 0.0 1.4 1 0 0 1 1 1 0 HI0933-like protein Lycopene_cycl PF05834.12 gi|449066999|ref|YP_007434081.1| - 0.022 13.8 0.0 0.053 12.6 0.0 1.8 2 1 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|449066999|ref|YP_007434081.1| - 0.15 11.2 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Thi4 family HTH_AsnC-type PF13404.6 gi|449067000|ref|YP_007434082.1| - 2.5e-18 65.6 0.3 4.8e-18 64.7 0.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|449067000|ref|YP_007434082.1| - 1.8e-17 62.7 0.6 3.5e-17 61.7 0.6 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|449067000|ref|YP_007434082.1| - 1.1e-15 57.3 0.1 1.6e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|449067000|ref|YP_007434082.1| - 1.4e-06 28.1 0.3 3.6e-06 26.8 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_5 PF01022.20 gi|449067000|ref|YP_007434082.1| - 6.1e-05 22.8 0.1 0.00014 21.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|449067000|ref|YP_007434082.1| - 0.00037 20.3 0.3 0.0018 18.2 0.2 2.1 2 1 1 3 3 2 1 MarR family Sigma70_r4 PF04545.16 gi|449067000|ref|YP_007434082.1| - 0.00038 19.9 0.6 0.0041 16.6 0.1 2.7 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_Mga PF08280.11 gi|449067000|ref|YP_007434082.1| - 0.00046 20.2 0.0 0.00091 19.2 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.7 gi|449067000|ref|YP_007434082.1| - 0.0014 18.5 0.0 0.0039 17.1 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|449067000|ref|YP_007434082.1| - 0.0015 18.6 0.0 0.0035 17.4 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain NapD PF03927.13 gi|449067000|ref|YP_007434082.1| - 0.0017 18.4 0.0 0.003 17.6 0.0 1.4 1 0 0 1 1 1 1 NapD protein HTH_23 PF13384.6 gi|449067000|ref|YP_007434082.1| - 0.0026 17.5 0.0 0.0096 15.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_27 PF13463.6 gi|449067000|ref|YP_007434082.1| - 0.0028 18.1 0.0 0.0061 17.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|449067000|ref|YP_007434082.1| - 0.0031 17.9 0.7 0.022 15.2 0.3 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|449067000|ref|YP_007434082.1| - 0.0036 17.2 0.2 0.033 14.2 0.0 2.4 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|449067000|ref|YP_007434082.1| - 0.0055 16.8 0.0 0.014 15.6 0.0 1.7 2 1 0 2 2 1 1 AsnC-like ligand binding domain HTH_IclR PF09339.10 gi|449067000|ref|YP_007434082.1| - 0.0082 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|449067000|ref|YP_007434082.1| - 0.0088 15.9 0.0 0.018 14.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 gi|449067000|ref|YP_007434082.1| - 0.011 15.3 0.7 0.032 13.8 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|449067000|ref|YP_007434082.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|449067000|ref|YP_007434082.1| - 0.015 15.0 0.2 0.056 13.1 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|449067000|ref|YP_007434082.1| - 0.016 15.0 0.1 0.11 12.3 0.0 2.3 2 1 0 2 2 2 0 HTH DNA binding domain HTH_34 PF13601.6 gi|449067000|ref|YP_007434082.1| - 0.019 15.1 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain ACT_4 PF13291.6 gi|449067000|ref|YP_007434082.1| - 0.021 15.4 0.0 0.3 11.7 0.0 2.5 3 0 0 3 3 2 0 ACT domain Fe_dep_repress PF01325.19 gi|449067000|ref|YP_007434082.1| - 0.027 14.7 0.1 0.076 13.2 0.0 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|449067000|ref|YP_007434082.1| - 0.034 13.9 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain NTPase_1 PF03266.15 gi|449067000|ref|YP_007434082.1| - 0.038 13.9 0.3 0.096 12.6 0.3 1.9 1 1 0 1 1 1 0 NTPase DUF4423 PF14394.6 gi|449067000|ref|YP_007434082.1| - 0.039 13.7 1.4 3.5 7.3 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4423) RuvB_C PF05491.13 gi|449067000|ref|YP_007434082.1| - 0.04 13.8 0.1 0.1 12.5 0.1 1.7 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Mga PF05043.13 gi|449067000|ref|YP_007434082.1| - 0.045 14.3 0.0 0.089 13.4 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_29 PF13551.6 gi|449067000|ref|YP_007434082.1| - 0.047 13.7 0.0 0.083 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|449067000|ref|YP_007434082.1| - 0.053 13.9 0.2 0.44 10.9 0.0 2.3 3 0 0 3 3 2 0 Transcriptional regulator HTH_38 PF13936.6 gi|449067000|ref|YP_007434082.1| - 0.086 12.6 0.1 0.21 11.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|449067000|ref|YP_007434082.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_1 PF00126.27 gi|449067000|ref|YP_007434082.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RimK PF08443.11 gi|449067001|ref|YP_007434083.1| - 6.5e-31 107.4 0.0 7.6e-31 107.2 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|449067001|ref|YP_007434083.1| - 2.6e-11 43.2 0.1 9.6e-11 41.4 0.2 1.6 1 1 1 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|449067001|ref|YP_007434083.1| - 1.3e-08 35.0 0.1 1.9e-08 34.5 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|449067001|ref|YP_007434083.1| - 3.4e-07 29.8 0.0 0.0032 16.7 0.0 2.3 2 0 0 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|449067001|ref|YP_007434083.1| - 2.1e-05 23.9 0.0 0.072 12.3 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Synapsin_C PF02750.14 gi|449067001|ref|YP_007434083.1| - 0.00093 18.8 0.0 0.001 18.6 0.0 1.1 1 0 0 1 1 1 1 Synapsin, ATP binding domain Ins134_P3_kin PF05770.11 gi|449067001|ref|YP_007434083.1| - 0.0019 17.7 0.0 0.36 10.3 0.0 2.1 1 1 1 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain polyprenyl_synt PF00348.17 gi|449067002|ref|YP_007434084.1| - 6.4e-34 117.2 0.3 9.7e-34 116.6 0.3 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase DUF4335 PF14233.6 gi|449067002|ref|YP_007434084.1| - 0.081 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4335) ARA70 PF12489.8 gi|449067003|ref|YP_007434085.1| - 0.37 11.0 2.8 10 6.3 2.7 2.3 1 1 0 1 1 1 0 Nuclear coactivator PNP_UDP_1 PF01048.20 gi|449067004|ref|YP_007434086.1| - 6.9e-47 159.7 0.0 7.8e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pribosyltran PF00156.27 gi|449067005|ref|YP_007434087.1| - 7.5e-17 61.3 0.0 1.1e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|449067005|ref|YP_007434087.1| - 0.0006 19.3 0.0 0.0008 18.9 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase KH_5 PF13184.6 gi|449067005|ref|YP_007434087.1| - 0.1 12.7 1.2 3.7 7.7 0.0 2.9 3 0 0 3 3 3 0 NusA-like KH domain SNF5 PF04855.12 gi|449067005|ref|YP_007434087.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.3 1 1 0 1 1 1 0 SNF5 / SMARCB1 / INI1 eRF1_2 PF03464.15 gi|449067006|ref|YP_007434088.1| - 4.1e-44 150.1 0.0 7.3e-44 149.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|449067006|ref|YP_007434088.1| - 6.2e-21 75.0 3.5 3.1e-20 72.7 1.1 2.8 2 2 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|449067006|ref|YP_007434088.1| - 1.6e-13 51.1 0.0 3.6e-13 49.9 0.0 1.6 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|449067006|ref|YP_007434088.1| - 1.9e-12 47.6 0.0 3e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|449067006|ref|YP_007434088.1| - 0.049 13.6 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 eRF1 domain 1 SSV1_ORF_D-335 PF07935.11 gi|449067007|ref|YP_007434089.1| - 2.7e-25 88.5 3.1 3.2e-25 88.2 3.1 1.1 1 0 0 1 1 1 1 ORF D-335-like protein BH4 PF02180.17 gi|449067007|ref|YP_007434089.1| - 3.9 7.4 7.6 6.7 6.6 0.9 2.5 2 0 0 2 2 2 0 Bcl-2 homology region 4 DUF3188 PF11384.8 gi|449067009|ref|YP_007434091.1| - 6.5 6.5 6.3 18 5.1 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) DUF1077 PF06417.12 gi|449067010|ref|YP_007434092.1| - 2.3 8.2 6.2 0.32 11.0 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1077) PadR PF03551.14 gi|449067012|ref|YP_007434094.1| - 3.9e-11 42.8 0.1 1.1e-10 41.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF2120 PF09893.9 gi|449067012|ref|YP_007434094.1| - 0.00078 19.6 1.0 0.001 19.2 1.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) RTP PF02334.16 gi|449067012|ref|YP_007434094.1| - 0.0016 19.1 0.0 0.0031 18.1 0.0 1.7 1 1 0 1 1 1 1 Replication terminator protein HTH_45 PF14947.6 gi|449067012|ref|YP_007434094.1| - 0.0019 18.1 0.9 0.0082 16.1 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix BLACT_WH PF17778.1 gi|449067012|ref|YP_007434094.1| - 0.0057 16.6 0.0 0.041 13.9 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain DUF4364 PF14277.6 gi|449067012|ref|YP_007434094.1| - 0.043 13.6 0.7 0.048 13.4 0.1 1.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_IclR PF09339.10 gi|449067012|ref|YP_007434094.1| - 0.14 12.0 0.1 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain ABC_tran PF00005.27 gi|449067013|ref|YP_007434095.1| - 4.2e-16 59.7 0.0 7.2e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|449067013|ref|YP_007434095.1| - 6e-13 49.3 0.4 1.3e-12 48.2 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|449067013|ref|YP_007434095.1| - 3.5e-08 33.6 0.0 4.9e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC2_membrane PF01061.24 gi|449067014|ref|YP_007434096.1| - 7.7e-35 120.2 21.3 7.7e-35 120.2 21.3 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|449067014|ref|YP_007434096.1| - 1e-18 67.6 25.7 1e-18 67.6 25.7 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|449067014|ref|YP_007434096.1| - 3.3e-08 33.2 18.2 4.4e-08 32.8 18.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|449067014|ref|YP_007434096.1| - 0.00011 22.2 12.8 0.00011 22.2 12.8 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein EMP70 PF02990.16 gi|449067014|ref|YP_007434096.1| - 0.0068 15.1 0.3 0.0068 15.1 0.3 2.2 1 1 1 2 2 2 1 Endomembrane protein 70 Ald_Xan_dh_C2 PF02738.18 gi|449067015|ref|YP_007434097.1| - 9.2e-142 473.3 0.0 1.2e-141 472.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449067015|ref|YP_007434097.1| - 7.8e-18 64.8 0.0 9.8e-09 35.6 0.0 2.6 1 1 1 2 2 2 2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF1947 PF09183.10 gi|449067016|ref|YP_007434098.1| - 3.8e-24 84.8 1.1 6.2e-24 84.1 1.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|449067016|ref|YP_007434098.1| - 5.9e-14 51.8 0.4 9e-14 51.2 0.4 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|449067016|ref|YP_007434098.1| - 0.00093 19.4 0.3 0.0014 18.9 0.3 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|449067016|ref|YP_007434098.1| - 0.13 13.0 4.3 0.65 10.7 1.8 2.5 2 1 0 2 2 2 0 Pre-PUA-like domain Glycos_transf_2 PF00535.26 gi|449067017|ref|YP_007434099.1| - 1.6e-22 80.1 0.1 3.3e-22 79.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|449067017|ref|YP_007434099.1| - 0.013 15.0 0.1 0.02 14.4 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|449067017|ref|YP_007434099.1| - 0.042 14.4 0.0 0.072 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 HTH_24 PF13412.6 gi|449067018|ref|YP_007434100.1| - 5.7e-06 25.8 0.2 1.1e-05 24.9 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|449067018|ref|YP_007434100.1| - 0.00011 22.1 0.4 0.00035 20.4 0.1 2.0 2 1 1 3 3 3 1 HTH domain Prefoldin_2 PF01920.20 gi|449067018|ref|YP_007434100.1| - 0.0017 18.3 3.3 0.0029 17.5 3.3 1.3 1 0 0 1 1 1 1 Prefoldin subunit HTH_IclR PF09339.10 gi|449067018|ref|YP_007434100.1| - 0.0021 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|449067018|ref|YP_007434100.1| - 0.0022 17.9 0.1 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 MarR family Med9 PF07544.13 gi|449067018|ref|YP_007434100.1| - 0.0027 17.7 1.0 0.0099 16.0 1.0 1.9 1 1 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 Csm1_N PF18504.1 gi|449067018|ref|YP_007434100.1| - 0.0038 17.5 2.1 0.009 16.3 2.1 1.7 1 1 0 1 1 1 1 Csm1 N-terminal domain NRBF2 PF08961.10 gi|449067018|ref|YP_007434100.1| - 0.013 15.2 1.3 0.02 14.5 1.3 1.3 1 1 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator DivIC PF04977.15 gi|449067018|ref|YP_007434100.1| - 0.017 14.9 2.1 0.025 14.4 0.4 1.9 1 1 1 2 2 2 0 Septum formation initiator HTH_DeoR PF08220.12 gi|449067018|ref|YP_007434100.1| - 0.019 14.7 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|449067018|ref|YP_007434100.1| - 0.021 14.6 0.0 0.048 13.4 0.0 1.6 1 1 0 1 1 1 0 LexA DNA binding domain TPR_MLP1_2 PF07926.12 gi|449067018|ref|YP_007434100.1| - 0.021 14.9 1.4 0.059 13.4 1.0 1.7 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein MarR_2 PF12802.7 gi|449067018|ref|YP_007434100.1| - 0.034 14.0 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Phage_terminase PF10668.9 gi|449067018|ref|YP_007434100.1| - 0.041 13.9 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit FeoC PF09012.10 gi|449067018|ref|YP_007434100.1| - 0.047 13.8 0.0 0.09 12.9 0.0 1.5 1 1 0 1 1 1 0 FeoC like transcriptional regulator Myc-LZ PF02344.15 gi|449067018|ref|YP_007434100.1| - 0.056 13.5 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Myc leucine zipper domain Bap31_Bap29_C PF18035.1 gi|449067018|ref|YP_007434100.1| - 0.057 13.4 1.3 0.16 12.0 1.3 1.8 1 1 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain HTH_5 PF01022.20 gi|449067018|ref|YP_007434100.1| - 0.061 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|449067018|ref|YP_007434100.1| - 0.061 13.3 0.6 0.088 12.8 0.1 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|449067018|ref|YP_007434100.1| - 0.072 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF5595 PF18077.1 gi|449067018|ref|YP_007434100.1| - 0.073 13.2 1.8 0.13 12.3 1.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5595) SlyX PF04102.12 gi|449067018|ref|YP_007434100.1| - 0.074 13.7 0.0 0.16 12.6 0.0 1.5 1 0 0 1 1 1 0 SlyX Rrf2 PF02082.20 gi|449067018|ref|YP_007434100.1| - 0.095 13.1 0.0 0.17 12.2 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator Syntaxin-6_N PF09177.11 gi|449067018|ref|YP_007434100.1| - 0.097 13.2 0.8 0.15 12.7 0.7 1.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal FAM76 PF16046.5 gi|449067018|ref|YP_007434100.1| - 0.12 11.7 0.6 0.12 11.7 0.6 1.0 1 0 0 1 1 1 0 FAM76 protein Cep57_CLD_2 PF14197.6 gi|449067018|ref|YP_007434100.1| - 0.36 11.0 3.4 0.99 9.5 3.4 1.8 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 OCD_Mu_crystall PF02423.15 gi|449067019|ref|YP_007434101.1| - 2e-47 161.7 0.1 2.2e-46 158.3 0.1 1.9 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|449067019|ref|YP_007434101.1| - 2.1e-05 24.6 0.0 4.5e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|449067019|ref|YP_007434101.1| - 0.0059 16.2 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|449067019|ref|YP_007434101.1| - 0.0073 16.5 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|449067019|ref|YP_007434101.1| - 0.021 15.6 0.0 0.072 13.9 0.0 1.9 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NmrA PF05368.13 gi|449067019|ref|YP_007434101.1| - 0.025 14.1 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family F420_oxidored PF03807.17 gi|449067019|ref|YP_007434101.1| - 0.04 14.5 0.2 0.28 11.8 0.1 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Aminotran_1_2 PF00155.21 gi|449067020|ref|YP_007434102.1| - 2.5e-28 99.3 0.0 2.8e-28 99.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|449067020|ref|YP_007434102.1| - 8.1e-10 38.0 0.0 1.4e-09 37.3 0.0 1.3 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Peptidase_M24 PF00557.24 gi|449067021|ref|YP_007434103.1| - 4.7e-59 199.6 0.1 7.5e-59 198.9 0.1 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|449067021|ref|YP_007434103.1| - 4e-16 59.9 0.0 8.1e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Hist_deacetyl PF00850.19 gi|449067022|ref|YP_007434104.1| - 3.2e-58 197.6 0.0 4.8e-58 197.1 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain PmbA_TldD PF01523.16 gi|449067023|ref|YP_007434105.1| - 6e-40 137.8 0.3 7.7e-40 137.5 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|449067024|ref|YP_007434106.1| - 4.6e-32 112.0 1.9 6.5e-32 111.5 1.9 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Sm_multidrug_ex PF06695.11 gi|449067025|ref|YP_007434107.1| - 1e-17 64.9 6.0 1.2e-17 64.6 6.0 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Herpes_UL73 PF03554.13 gi|449067025|ref|YP_007434107.1| - 0.03 14.3 0.4 0.058 13.4 0.2 1.6 1 1 0 1 1 1 0 UL73 viral envelope glycoprotein Ald_Xan_dh_C2 PF02738.18 gi|449067026|ref|YP_007434108.1| - 1.4e-106 357.2 0.0 1.2e-104 350.7 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449067026|ref|YP_007434108.1| - 5.7e-11 42.8 0.0 1.7e-10 41.3 0.0 1.9 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XdhC_C PF13478.6 gi|449067027|ref|YP_007434109.1| - 2.9e-23 82.7 0.1 4.1e-23 82.2 0.1 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|449067027|ref|YP_007434109.1| - 0.0025 18.3 0.3 1.9 9.1 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|449067027|ref|YP_007434109.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SapB_1 PF05184.15 gi|449067028|ref|YP_007434110.1| - 0.016 15.2 1.4 0.016 15.2 1.4 2.0 2 0 0 2 2 2 0 Saposin-like type B, region 1 PALP PF00291.25 gi|449067029|ref|YP_007434111.1| - 2.4e-57 194.6 0.0 2.8e-57 194.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|449067029|ref|YP_007434111.1| - 0.0053 16.8 2.2 0.2 11.7 0.8 2.4 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DFP PF04127.15 gi|449067029|ref|YP_007434111.1| - 0.084 12.7 0.2 0.17 11.7 0.2 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Zn-ribbon_8 PF09723.10 gi|449067029|ref|YP_007434111.1| - 0.26 11.4 5.0 0.92 9.7 4.6 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|449067029|ref|YP_007434111.1| - 0.79 9.2 4.2 2.4 7.7 4.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|449067029|ref|YP_007434111.1| - 0.79 9.7 7.0 4.1 7.4 0.7 2.8 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|449067029|ref|YP_007434111.1| - 4 7.3 6.3 12 5.8 6.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Trypsin_2 PF13365.6 gi|449067030|ref|YP_007434112.1| - 8.4e-25 88.4 1.7 1.2e-24 87.9 1.7 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|449067030|ref|YP_007434112.1| - 4.8e-14 52.4 0.1 1.1e-13 51.3 0.1 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|449067030|ref|YP_007434112.1| - 6.5e-11 41.9 0.2 1.2e-10 41.0 0.2 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|449067030|ref|YP_007434112.1| - 2.1e-10 40.8 0.0 3.7e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Trypsin PDZ PF00595.24 gi|449067030|ref|YP_007434112.1| - 1.2e-06 28.8 0.1 3e-06 27.5 0.1 1.7 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 gi|449067030|ref|YP_007434112.1| - 0.00026 20.9 0.0 0.00059 19.8 0.0 1.6 1 0 0 1 1 1 1 Tricorn protease PDZ domain GRASP55_65 PF04495.14 gi|449067030|ref|YP_007434112.1| - 0.0026 18.1 0.0 0.0053 17.1 0.0 1.5 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_S46 PF10459.9 gi|449067030|ref|YP_007434112.1| - 0.036 12.7 0.5 0.058 12.0 0.5 1.2 1 0 0 1 1 1 0 Peptidase S46 Peptidase_S7 PF00949.21 gi|449067030|ref|YP_007434112.1| - 0.036 13.9 2.8 0.19 11.5 0.4 2.3 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S32 PF05579.13 gi|449067030|ref|YP_007434112.1| - 0.054 12.7 0.1 0.7 9.0 0.0 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S29 PF02907.15 gi|449067030|ref|YP_007434112.1| - 0.1 12.3 0.2 0.29 10.9 0.1 1.8 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease PAP2 PF01569.21 gi|449067031|ref|YP_007434113.1| - 1.3e-21 76.8 3.2 1.3e-21 76.8 3.2 2.1 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|449067031|ref|YP_007434113.1| - 2.8e-09 36.9 10.2 2.8e-09 36.9 10.2 2.7 1 1 1 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|449067031|ref|YP_007434113.1| - 0.018 15.5 2.5 0.018 15.5 2.5 2.9 3 1 0 3 3 3 0 PAP2 superfamily C-terminal DUF2542 PF10808.8 gi|449067032|ref|YP_007434114.1| - 0.51 10.9 3.4 1.5 9.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2542) DUF4064 PF13273.6 gi|449067032|ref|YP_007434114.1| - 1.4 9.3 11.7 23 5.3 11.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF2207 PF09972.9 gi|449067032|ref|YP_007434114.1| - 3.4 6.3 5.2 6.3 5.4 5.2 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4870 PF09685.10 gi|449067032|ref|YP_007434114.1| - 5.8 7.1 15.0 0.21 11.7 6.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4870) ABC_tran PF00005.27 gi|449067033|ref|YP_007434115.1| - 2.9e-25 89.4 0.0 5.9e-25 88.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|449067033|ref|YP_007434115.1| - 3.9e-10 40.0 0.0 1.4e-05 25.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system GDP_Man_Dehyd PF16363.5 gi|449067033|ref|YP_007434115.1| - 0.065 12.6 0.0 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase Glyco_hydro_30C PF17189.4 gi|449067033|ref|YP_007434115.1| - 0.1 12.8 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 30 beta sandwich domain Aminotran_3 PF00202.21 gi|449067034|ref|YP_007434116.1| - 4.5e-102 341.7 0.0 5.4e-102 341.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|449067034|ref|YP_007434116.1| - 0.053 12.7 0.0 3.7 6.6 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class I and II Methyltransf_11 PF08241.12 gi|449067036|ref|YP_007434118.1| - 4.1e-19 69.0 0.1 5.8e-19 68.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067036|ref|YP_007434118.1| - 7e-15 55.5 0.1 1.1e-14 54.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|449067036|ref|YP_007434118.1| - 9.5e-14 51.4 0.1 1.2e-13 51.2 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|449067036|ref|YP_007434118.1| - 4.2e-12 46.2 0.0 5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|449067036|ref|YP_007434118.1| - 1.1e-10 42.1 0.1 1.6e-10 41.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|449067036|ref|YP_007434118.1| - 1.9e-07 30.8 0.0 2.1e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|449067036|ref|YP_007434118.1| - 6.3e-07 29.0 0.0 7.6e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|449067036|ref|YP_007434118.1| - 0.00015 21.3 0.0 0.00019 20.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|449067036|ref|YP_007434118.1| - 0.00033 20.6 0.4 0.00053 19.9 0.4 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 gi|449067036|ref|YP_007434118.1| - 0.00055 19.6 0.1 0.00069 19.3 0.1 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|449067036|ref|YP_007434118.1| - 0.0012 18.1 0.0 0.0016 17.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain MetW PF07021.12 gi|449067036|ref|YP_007434118.1| - 0.01 15.5 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CheR PF01739.18 gi|449067036|ref|YP_007434118.1| - 0.038 13.5 0.2 1.5 8.3 0.0 2.1 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_18 PF12847.7 gi|449067036|ref|YP_007434118.1| - 0.088 12.7 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Plk4_PB1 PF18190.1 gi|449067036|ref|YP_007434118.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Polo-like Kinase 4 Polo Box 1 RrnaAD PF00398.20 gi|449067036|ref|YP_007434118.1| - 0.14 11.2 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Polyketide_cyc PF03364.20 gi|449067037|ref|YP_007434119.1| - 0.026 14.7 0.0 0.047 13.9 0.0 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport HIT PF01230.23 gi|449067038|ref|YP_007434120.1| - 1.2e-22 80.5 0.0 1.4e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|449067038|ref|YP_007434120.1| - 2e-10 41.1 0.1 5.9e-10 39.6 0.0 1.6 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding FemAB PF02388.16 gi|449067038|ref|YP_007434120.1| - 0.014 14.3 0.0 0.018 13.9 0.0 1.1 1 0 0 1 1 1 0 FemAB family CwfJ_C_1 PF04677.15 gi|449067038|ref|YP_007434120.1| - 0.015 15.2 0.1 0.025 14.4 0.0 1.4 2 0 0 2 2 2 0 Protein similar to CwfJ C-terminus 1 TniB PF05621.11 gi|449067038|ref|YP_007434120.1| - 0.037 13.4 0.1 0.05 13.0 0.1 1.1 1 0 0 1 1 1 0 Bacterial TniB protein Acyl-CoA_dh_1 PF00441.24 gi|449067039|ref|YP_007434121.1| - 5.5e-36 124.0 0.2 8.5e-36 123.4 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|449067039|ref|YP_007434121.1| - 4.6e-28 98.1 0.0 1.2e-27 96.8 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449067039|ref|YP_007434121.1| - 4.3e-21 74.9 0.1 8.9e-21 73.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|449067039|ref|YP_007434121.1| - 3.3e-16 59.8 0.0 5.8e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain CBM39 PF15886.5 gi|449067039|ref|YP_007434121.1| - 0.014 15.3 0.0 0.028 14.3 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain (family 32) ABC_tran PF00005.27 gi|449067040|ref|YP_007434122.1| - 1.1e-30 106.9 0.0 8.7e-30 104.0 0.0 2.2 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|449067040|ref|YP_007434122.1| - 1.5e-16 60.6 0.0 2.8e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|449067040|ref|YP_007434122.1| - 4.9e-08 33.1 0.6 0.00031 20.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|449067040|ref|YP_007434122.1| - 1.1e-06 29.0 0.0 0.0058 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|449067040|ref|YP_007434122.1| - 1.2e-06 28.2 0.1 9.1e-06 25.3 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|449067040|ref|YP_007434122.1| - 7.5e-06 25.5 0.1 0.0006 19.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial TniB protein AAA_33 PF13671.6 gi|449067040|ref|YP_007434122.1| - 0.00038 20.6 0.0 0.0018 18.4 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|449067040|ref|YP_007434122.1| - 0.00052 19.6 0.1 0.8 9.2 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|449067040|ref|YP_007434122.1| - 0.0018 18.0 1.2 0.0064 16.2 0.0 2.0 2 1 0 3 3 3 1 AAA ATPase domain AAA_13 PF13166.6 gi|449067040|ref|YP_007434122.1| - 0.0062 15.3 0.1 0.57 8.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|449067040|ref|YP_007434122.1| - 0.0075 16.8 0.1 0.028 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|449067040|ref|YP_007434122.1| - 0.0084 15.8 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|449067040|ref|YP_007434122.1| - 0.0087 16.5 0.2 0.022 15.2 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|449067040|ref|YP_007434122.1| - 0.011 14.9 0.3 0.1 11.8 0.2 2.2 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.17 gi|449067040|ref|YP_007434122.1| - 0.018 14.8 0.1 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|449067040|ref|YP_007434122.1| - 0.026 14.4 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|449067040|ref|YP_007434122.1| - 0.043 14.0 0.0 0.18 12.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|449067040|ref|YP_007434122.1| - 0.047 13.6 0.3 0.31 10.9 0.1 2.1 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|449067040|ref|YP_007434122.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|449067040|ref|YP_007434122.1| - 0.066 12.9 0.1 0.24 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|449067040|ref|YP_007434122.1| - 0.11 12.2 0.2 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|449067040|ref|YP_007434122.1| - 0.2 11.4 0.9 18 5.0 0.0 2.9 2 1 1 3 3 3 0 DEAD/DEAH box helicase AAA PF00004.29 gi|449067040|ref|YP_007434122.1| - 0.2 12.1 0.9 4.3 7.8 0.9 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_IclR PF09339.10 gi|449067040|ref|YP_007434122.1| - 0.27 11.1 0.9 9.8 6.1 0.0 2.6 3 0 0 3 3 2 0 IclR helix-turn-helix domain ABC_tran PF00005.27 gi|449067041|ref|YP_007434123.1| - 1.2e-24 87.4 0.1 3.9e-23 82.5 0.1 2.4 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|449067041|ref|YP_007434123.1| - 1.6e-19 70.2 0.0 2.9e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|449067041|ref|YP_007434123.1| - 3.2e-09 37.0 0.9 7.6e-08 32.5 0.9 2.3 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449067041|ref|YP_007434123.1| - 2.4e-06 27.2 0.0 5.2e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|449067041|ref|YP_007434123.1| - 0.00067 19.3 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|449067041|ref|YP_007434123.1| - 0.0034 17.0 0.2 0.39 10.2 0.2 2.6 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|449067041|ref|YP_007434123.1| - 0.0064 16.8 0.1 1.3 9.3 0.0 2.8 2 1 1 3 3 3 1 AAA domain OSCP PF00213.18 gi|449067041|ref|YP_007434123.1| - 0.016 15.4 0.3 0.05 13.7 0.3 1.9 1 1 0 1 1 1 0 ATP synthase delta (OSCP) subunit PRK PF00485.18 gi|449067041|ref|YP_007434123.1| - 0.022 14.5 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.17 gi|449067041|ref|YP_007434123.1| - 0.026 14.2 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase PF06745.13 gi|449067041|ref|YP_007434123.1| - 0.038 13.3 0.7 3.1 7.1 0.1 2.6 2 0 0 2 2 2 0 KaiC Mg_chelatase PF01078.21 gi|449067041|ref|YP_007434123.1| - 0.054 12.9 0.0 0.51 9.7 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|449067041|ref|YP_007434123.1| - 0.084 12.6 0.1 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|449067041|ref|YP_007434123.1| - 0.12 12.7 0.3 0.3 11.4 0.3 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|449067041|ref|YP_007434123.1| - 0.15 12.1 0.1 0.81 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|449067041|ref|YP_007434123.1| - 0.21 10.3 1.7 0.72 8.6 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|449067041|ref|YP_007434123.1| - 0.29 11.6 1.1 5.3 7.5 0.0 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|449067041|ref|YP_007434123.1| - 0.7 9.9 2.3 2.3 8.3 2.2 2.2 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain BPD_transp_1 PF00528.22 gi|449067042|ref|YP_007434124.1| - 6.4e-30 104.3 14.2 6.4e-30 104.3 14.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|449067042|ref|YP_007434124.1| - 5.4e-07 29.5 0.2 5.4e-07 29.5 0.2 3.3 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C LRR_12 PF18837.1 gi|449067042|ref|YP_007434124.1| - 0.31 10.7 2.4 0.89 9.3 0.9 2.5 3 0 0 3 3 3 0 Leucine-rich repeat BPD_transp_1 PF00528.22 gi|449067043|ref|YP_007434125.1| - 6.6e-41 140.1 16.6 6.6e-41 140.1 16.6 2.7 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|449067044|ref|YP_007434126.1| - 1.7e-54 185.2 10.4 1.7e-54 185.2 10.4 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.20 gi|449067044|ref|YP_007434126.1| - 7.2e-09 35.4 6.7 3.9e-05 23.4 0.9 3.4 2 0 0 2 2 2 2 PKD domain COX4_pro PF03626.14 gi|449067044|ref|YP_007434126.1| - 0.026 14.9 0.9 0.065 13.7 0.9 1.6 1 0 0 1 1 1 0 Prokaryotic Cytochrome C oxidase subunit IV U-box PF04564.15 gi|449067044|ref|YP_007434126.1| - 0.043 14.0 0.0 0.31 11.2 0.0 2.2 2 0 0 2 2 2 0 U-box domain CD34_antigen PF06365.12 gi|449067044|ref|YP_007434126.1| - 0.12 12.0 0.3 0.2 11.2 0.3 1.3 1 0 0 1 1 1 0 CD34/Podocalyxin family DUF515 PF04415.12 gi|449067044|ref|YP_007434126.1| - 2.6 6.3 5.7 1.3 7.4 2.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF515) Pilin_N PF07790.11 gi|449067044|ref|YP_007434126.1| - 3.8 8.5 5.8 3.1 8.8 3.6 2.1 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal SKA2 PF16740.5 gi|449067045|ref|YP_007434127.1| - 0.042 13.6 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 Neur PF00064.18 gi|449067046|ref|YP_007434128.1| - 0.06 12.1 0.0 0.06 12.1 0.0 1.1 1 0 0 1 1 1 0 Neuraminidase Acyltransf_C PF16076.5 gi|449067046|ref|YP_007434128.1| - 0.086 12.9 0.2 0.19 11.8 0.0 1.6 2 1 0 2 2 2 0 Acyltransferase C-terminus EF-hand_5 PF13202.6 gi|449067046|ref|YP_007434128.1| - 0.24 11.0 2.0 35 4.1 0.3 3.2 3 0 0 3 3 3 0 EF hand Pkinase PF00069.25 gi|449067047|ref|YP_007434129.1| - 1.8e-34 119.3 0.0 2.6e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|449067047|ref|YP_007434129.1| - 4.3e-17 62.2 0.0 1e-16 61.0 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|449067047|ref|YP_007434129.1| - 0.00088 18.7 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family FTA2 PF13095.6 gi|449067047|ref|YP_007434129.1| - 0.0074 15.9 0.1 0.031 13.9 0.0 1.9 2 0 0 2 2 2 1 Kinetochore Sim4 complex subunit FTA2 GTP_EFTU_D2 PF03144.25 gi|449067047|ref|YP_007434129.1| - 0.0075 16.6 0.1 0.99 9.8 0.0 3.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 Kinase-like PF14531.6 gi|449067047|ref|YP_007434129.1| - 0.022 14.1 0.0 0.097 12.0 0.0 1.8 1 1 0 1 1 1 0 Kinase-like Methyltr_RsmB-F PF01189.17 gi|449067048|ref|YP_007434130.1| - 6.4e-34 117.4 0.0 1e-33 116.7 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|449067048|ref|YP_007434130.1| - 1.6e-09 37.7 0.0 4.9e-09 36.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|449067048|ref|YP_007434130.1| - 3.5e-08 33.4 0.0 5.6e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|449067048|ref|YP_007434130.1| - 2.4e-07 31.4 0.1 1.2e-05 26.0 0.0 2.9 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|449067048|ref|YP_007434130.1| - 6.8e-05 22.4 0.5 0.00086 18.8 0.1 2.1 2 0 0 2 2 2 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|449067048|ref|YP_007434130.1| - 0.0004 19.8 0.1 0.00091 18.6 0.1 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|449067048|ref|YP_007434130.1| - 0.00046 20.8 0.0 0.0094 16.6 0.0 2.7 3 0 0 3 3 3 1 Methyltransferase domain FtsJ PF01728.19 gi|449067048|ref|YP_007434130.1| - 0.014 15.5 0.0 0.073 13.2 0.0 2.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|449067048|ref|YP_007434130.1| - 0.019 14.8 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|449067048|ref|YP_007434130.1| - 0.034 13.4 0.0 0.063 12.6 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|449067048|ref|YP_007434130.1| - 0.11 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin MTS PF05175.14 gi|449067048|ref|YP_007434130.1| - 0.11 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltr_RsmF_N PF17125.5 gi|449067048|ref|YP_007434130.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF Radical_SAM_C PF16199.5 gi|449067049|ref|YP_007434131.1| - 8.9e-28 96.2 0.3 1.6e-27 95.3 0.3 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|449067049|ref|YP_007434131.1| - 6.6e-22 78.7 0.0 1.2e-21 77.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|449067049|ref|YP_007434131.1| - 2.7e-08 34.1 0.1 5.6e-08 33.0 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|449067049|ref|YP_007434131.1| - 0.0047 16.9 0.0 0.057 13.4 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Sugar_tr PF00083.24 gi|449067050|ref|YP_007434132.1| - 5.2e-50 170.6 28.2 7.6e-50 170.1 28.2 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067050|ref|YP_007434132.1| - 3.4e-24 85.4 33.2 3.4e-24 85.4 33.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily RHH_1 PF01402.21 gi|449067051|ref|YP_007434133.1| - 0.041 13.8 1.1 0.065 13.2 0.6 1.6 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family AvrM_N PF18247.1 gi|449067052|ref|YP_007434134.1| - 0.044 13.7 2.3 0.049 13.6 0.2 2.1 2 1 0 2 2 2 0 Flax-rust effector AvrM N-terminal domain MJ1316 PF04457.12 gi|449067054|ref|YP_007434136.1| - 9e-13 48.8 0.8 1.1e-12 48.6 0.8 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Thermopsin PF05317.11 gi|449067055|ref|YP_007434137.1| - 7e-72 242.0 18.5 7e-72 242.0 18.5 2.5 2 1 1 3 3 3 1 Thermopsin AAA_31 PF13614.6 gi|449067056|ref|YP_007434138.1| - 3.1e-12 46.8 0.1 1.3e-11 44.7 0.0 2.1 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|449067056|ref|YP_007434138.1| - 7.4e-12 45.4 0.0 1.9e-11 44.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|449067056|ref|YP_007434138.1| - 1.9e-06 27.5 3.2 2.8e-06 27.0 1.3 2.2 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|449067056|ref|YP_007434138.1| - 3.2e-05 23.3 1.2 4.9e-05 22.7 0.4 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|449067056|ref|YP_007434138.1| - 0.00012 21.7 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|449067056|ref|YP_007434138.1| - 0.0016 17.9 0.5 0.0056 16.2 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|449067056|ref|YP_007434138.1| - 0.0042 16.4 0.6 0.0099 15.2 0.1 1.8 2 0 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 gi|449067056|ref|YP_007434138.1| - 0.087 12.1 0.1 0.19 11.0 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_25 PF13481.6 gi|449067056|ref|YP_007434138.1| - 0.11 12.1 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|449067056|ref|YP_007434138.1| - 0.16 11.6 0.4 0.86 9.2 0.2 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Glyco_trans_2_3 PF13632.6 gi|449067057|ref|YP_007434139.1| - 8.1e-26 91.1 0.0 8.1e-26 91.1 0.0 2.6 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|449067057|ref|YP_007434139.1| - 2.1e-25 90.0 0.0 2.7e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|449067057|ref|YP_007434139.1| - 9.2e-17 61.4 0.1 1.3e-16 60.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|449067057|ref|YP_007434139.1| - 4e-14 52.5 0.0 5.6e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|449067057|ref|YP_007434139.1| - 2.9e-05 22.8 17.5 0.0037 15.8 12.5 2.8 1 1 1 2 2 2 2 Cellulose synthase GYD PF08734.11 gi|449067058|ref|YP_007434140.1| - 2.4e-25 88.3 0.1 2.8e-25 88.1 0.1 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.21 gi|449067058|ref|YP_007434140.1| - 1.1e-05 25.3 0.1 1.9e-05 24.5 0.1 1.4 1 1 0 1 1 1 1 Lrp/AsnC ligand binding domain AMP-binding PF00501.28 gi|449067060|ref|YP_007434142.1| - 4.4e-88 295.7 0.0 5.4e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067060|ref|YP_007434142.1| - 4.7e-21 75.5 0.0 1.1e-20 74.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain YdjM PF04307.14 gi|449067061|ref|YP_007434143.1| - 1.6e-11 43.8 5.0 3.1e-10 39.7 4.5 2.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|449067061|ref|YP_007434143.1| - 0.019 14.7 0.0 0.019 14.7 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) Pyridoxal_deC PF00282.19 gi|449067063|ref|YP_007434145.1| - 1.1e-18 67.1 0.0 1.9e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|449067063|ref|YP_007434145.1| - 2.2e-10 40.1 0.0 7.2e-10 38.4 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|449067063|ref|YP_007434145.1| - 2.8e-08 33.3 0.0 1.5e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|449067063|ref|YP_007434145.1| - 3.1e-05 23.4 0.0 4.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|449067063|ref|YP_007434145.1| - 0.0014 17.2 0.0 0.0021 16.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|449067063|ref|YP_007434145.1| - 0.055 12.7 0.0 0.18 11.0 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase FGGY_N PF00370.21 gi|449067064|ref|YP_007434146.1| - 5.6e-38 130.9 0.0 9.5e-38 130.1 0.0 1.4 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|449067064|ref|YP_007434146.1| - 1.4e-24 86.9 0.0 2.2e-24 86.3 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain MreB_Mbl PF06723.13 gi|449067064|ref|YP_007434146.1| - 0.0035 16.2 0.2 0.033 13.0 0.1 2.1 2 0 0 2 2 2 1 MreB/Mbl protein Hydantoinase_A PF01968.18 gi|449067064|ref|YP_007434146.1| - 0.051 12.8 0.0 0.42 9.8 0.0 2.2 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase Raco_middle PF17651.1 gi|449067064|ref|YP_007434146.1| - 0.19 11.4 0.0 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 RACo middle region MFS_1 PF07690.16 gi|449067065|ref|YP_007434147.1| - 7.1e-32 110.7 39.2 9.6e-32 110.3 39.2 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067065|ref|YP_007434147.1| - 3.8e-08 32.6 26.9 5.5e-05 22.2 7.0 2.9 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|449067065|ref|YP_007434147.1| - 0.0084 14.6 8.7 0.39 9.0 8.7 2.3 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|449067065|ref|YP_007434147.1| - 0.092 11.6 25.0 5.6 5.7 24.3 3.1 1 1 0 1 1 1 0 MFS_1 like family DUF973 PF06157.11 gi|449067066|ref|YP_007434148.1| - 6.6e-68 229.0 40.3 1.1e-66 225.0 40.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF4134 PF13572.6 gi|449067066|ref|YP_007434148.1| - 0.12 12.6 7.3 0.15 12.4 5.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4134) Holin_SPP1 PF04688.13 gi|449067066|ref|YP_007434148.1| - 0.28 11.4 4.1 0.75 10.0 1.2 2.6 2 0 0 2 2 2 0 SPP1 phage holin DUF996 PF06195.13 gi|449067066|ref|YP_007434148.1| - 0.29 11.4 20.7 2.3 8.5 13.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF996) Yip1 PF04893.17 gi|449067066|ref|YP_007434148.1| - 0.34 10.6 11.4 0.65 9.7 11.4 1.5 1 1 0 1 1 1 0 Yip1 domain DUF3566 PF12089.8 gi|449067066|ref|YP_007434148.1| - 1.9 8.9 13.0 0.96 9.8 2.4 3.1 3 0 0 3 3 3 0 Transmembrane domain of unknown function (DUF3566) TMEM154 PF15102.6 gi|449067066|ref|YP_007434148.1| - 3.1 7.7 4.7 2.2 8.2 2.6 1.9 1 1 1 2 2 2 0 TMEM154 protein family DUF2304 PF10066.9 gi|449067066|ref|YP_007434148.1| - 8 6.7 12.4 5 7.4 0.5 2.8 3 1 0 3 3 3 0 Uncharacterized conserved protein (DUF2304) Cas_NE0113 PF09623.10 gi|449067070|ref|YP_007434152.1| - 9.8e-10 38.5 0.0 1.2e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.10 gi|449067070|ref|YP_007434152.1| - 0.0014 17.5 0.0 0.0019 17.1 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) LDcluster4 PF18306.1 gi|449067070|ref|YP_007434152.1| - 0.0039 16.8 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 SLOG cluster4 family ACT PF01842.25 gi|449067070|ref|YP_007434152.1| - 0.015 15.1 0.0 0.18 11.6 0.0 2.4 2 1 0 2 2 2 0 ACT domain Abhydrolase_6 PF12697.7 gi|449067071|ref|YP_007434153.1| - 2.8e-19 70.6 0.0 3.4e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|449067071|ref|YP_007434153.1| - 8.7e-19 68.2 1.9 9e-10 38.6 0.0 3.0 2 1 1 3 3 3 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|449067071|ref|YP_007434153.1| - 1.2e-09 37.8 0.0 2e-09 37.1 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 LIDHydrolase PF10230.9 gi|449067071|ref|YP_007434153.1| - 0.00061 19.4 0.2 0.0013 18.3 0.2 1.5 1 1 0 1 1 1 1 Lipid-droplet associated hydrolase Abhydrolase_4 PF08386.10 gi|449067071|ref|YP_007434153.1| - 0.001 19.2 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Ndr PF03096.14 gi|449067071|ref|YP_007434153.1| - 0.002 16.9 0.0 0.0026 16.5 0.0 1.2 1 0 0 1 1 1 1 Ndr family DLH PF01738.18 gi|449067071|ref|YP_007434153.1| - 0.013 15.0 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family ABC2_membrane PF01061.24 gi|449067072|ref|YP_007434154.1| - 1.6e-06 27.7 27.2 1.6e-06 27.7 27.2 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|449067072|ref|YP_007434154.1| - 0.0017 17.5 34.1 0.0023 17.1 34.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|449067073|ref|YP_007434155.1| - 1.7e-14 54.5 0.1 2.8e-14 53.8 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067073|ref|YP_007434155.1| - 4.4e-12 46.4 0.1 2.1e-05 24.5 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|449067073|ref|YP_007434155.1| - 2.1e-07 31.6 0.1 2.1e-07 31.6 0.1 1.9 2 1 1 3 3 3 1 AAA domain SMC_N PF02463.19 gi|449067073|ref|YP_007434155.1| - 7.3e-06 25.6 0.5 0.00092 18.7 0.1 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|449067073|ref|YP_007434155.1| - 4.2e-05 23.2 0.0 8.1e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|449067073|ref|YP_007434155.1| - 5.7e-05 23.0 2.2 0.00017 21.4 0.1 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|449067073|ref|YP_007434155.1| - 0.004 17.6 0.1 0.0072 16.7 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|449067073|ref|YP_007434155.1| - 0.0046 17.1 0.0 0.047 13.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF3584 PF12128.8 gi|449067073|ref|YP_007434155.1| - 0.019 12.5 0.4 0.025 12.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_18 PF13238.6 gi|449067073|ref|YP_007434155.1| - 0.02 15.5 0.6 0.045 14.3 0.6 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|449067073|ref|YP_007434155.1| - 0.026 14.2 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|449067073|ref|YP_007434155.1| - 0.031 14.7 0.0 0.039 14.3 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|449067073|ref|YP_007434155.1| - 0.035 14.0 0.5 0.1 12.5 0.5 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|449067073|ref|YP_007434155.1| - 0.042 14.2 0.2 0.089 13.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|449067073|ref|YP_007434155.1| - 0.049 12.8 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit cobW PF02492.19 gi|449067073|ref|YP_007434155.1| - 0.067 12.8 0.2 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|449067073|ref|YP_007434155.1| - 0.14 11.9 0.2 0.16 11.7 0.2 1.4 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|449067073|ref|YP_007434155.1| - 0.14 11.2 0.1 0.26 10.3 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_27 PF13514.6 gi|449067073|ref|YP_007434155.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|449067073|ref|YP_007434155.1| - 0.18 12.1 0.0 1.6 9.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit HTH_34 PF13601.6 gi|449067075|ref|YP_007434157.1| - 3.9e-14 52.6 0.1 5.1e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|449067075|ref|YP_007434157.1| - 5.4e-08 32.6 0.2 1.6e-07 31.1 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|449067075|ref|YP_007434157.1| - 1.4e-07 31.5 0.0 2e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|449067075|ref|YP_007434157.1| - 2.5e-05 24.0 0.1 3.6e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.17 gi|449067075|ref|YP_007434157.1| - 9.6e-05 22.2 0.2 0.00011 22.0 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|449067075|ref|YP_007434157.1| - 0.00053 19.8 0.0 0.0014 18.5 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|449067075|ref|YP_007434157.1| - 0.00054 20.1 0.0 0.00073 19.7 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|449067075|ref|YP_007434157.1| - 0.0009 19.1 0.2 0.0015 18.4 0.2 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|449067075|ref|YP_007434157.1| - 0.0014 18.5 0.0 0.0019 18.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|449067075|ref|YP_007434157.1| - 0.0023 17.4 0.1 0.007 15.9 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.10 gi|449067075|ref|YP_007434157.1| - 0.0091 15.9 0.0 0.021 14.8 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|449067075|ref|YP_007434157.1| - 0.0094 15.8 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|449067075|ref|YP_007434157.1| - 0.088 13.2 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF2513 PF10711.9 gi|449067075|ref|YP_007434157.1| - 0.088 13.1 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_27 PF13463.6 gi|449067075|ref|YP_007434157.1| - 0.098 13.2 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Acyl-CoA_dh_N PF02771.16 gi|449067076|ref|YP_007434158.1| - 2.6e-25 89.3 0.0 4.5e-25 88.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449067076|ref|YP_007434158.1| - 1.4e-20 73.3 0.0 2.2e-20 72.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|449067076|ref|YP_007434158.1| - 3.1e-13 50.2 0.1 7.8e-07 29.4 0.0 2.4 1 1 1 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.6 gi|449067076|ref|YP_007434158.1| - 0.0061 17.1 0.0 0.013 16.1 0.0 1.6 1 1 0 1 1 1 1 Acyl-coenzyme A oxidase N-terminal MaoC_dehydratas PF01575.19 gi|449067077|ref|YP_007434159.1| - 8.2e-16 57.7 0.0 1.1e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|449067077|ref|YP_007434159.1| - 2.5e-09 37.3 0.0 3.2e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase S1 PF00575.23 gi|449067077|ref|YP_007434159.1| - 0.013 15.8 0.1 0.025 14.9 0.1 1.5 1 0 0 1 1 1 0 S1 RNA binding domain Acyl-CoA_dh_1 PF00441.24 gi|449067078|ref|YP_007434160.1| - 2.1e-08 34.5 0.0 2e-06 28.1 0.0 2.2 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain Amidohydro_3 PF07969.11 gi|449067079|ref|YP_007434161.1| - 2.3e-29 103.2 0.0 1.6e-25 90.5 0.0 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|449067079|ref|YP_007434161.1| - 3.2e-13 49.7 0.0 5.8e-13 48.9 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family UPF0547 PF10571.9 gi|449067080|ref|YP_007434162.1| - 5.1e-06 26.5 1.5 7.6e-06 25.9 1.5 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|449067080|ref|YP_007434162.1| - 9.9e-06 24.8 2.3 1.5e-05 24.2 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|449067080|ref|YP_007434162.1| - 1.1e-05 25.0 4.1 1.5e-05 24.5 4.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|449067080|ref|YP_007434162.1| - 0.00024 21.1 1.3 0.00038 20.4 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|449067080|ref|YP_007434162.1| - 0.038 14.7 2.7 0.059 14.1 2.7 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf_UBZ PF18439.1 gi|449067080|ref|YP_007434162.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger DUF4064 PF13273.6 gi|449067081|ref|YP_007434163.1| - 4.8 7.5 19.9 65 3.9 19.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DrsE PF02635.15 gi|449067082|ref|YP_007434164.1| - 1.1e-05 25.8 0.0 1.6e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family OST3_OST6 PF04756.13 gi|449067083|ref|YP_007434165.1| - 0.28 10.5 3.2 0.36 10.2 3.2 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family COX15-CtaA PF02628.15 gi|449067083|ref|YP_007434165.1| - 0.31 10.0 13.3 0.25 10.4 9.5 1.9 1 1 1 2 2 2 0 Cytochrome oxidase assembly protein DUF2537 PF10801.8 gi|449067083|ref|YP_007434165.1| - 0.4 10.9 9.9 0.16 12.2 2.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2537) Protocadherin PF08374.11 gi|449067083|ref|YP_007434165.1| - 0.86 9.5 1.8 1 9.3 1.8 1.2 1 0 0 1 1 1 0 Protocadherin DUF2070 PF09843.9 gi|449067083|ref|YP_007434165.1| - 5.1 5.3 10.5 5.7 5.1 10.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) 3HCDH_N PF02737.18 gi|449067085|ref|YP_007434167.1| - 3.7e-64 215.9 0.3 5e-64 215.5 0.3 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|449067085|ref|YP_007434167.1| - 6.2e-46 155.0 0.7 8.8e-22 77.5 0.2 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|449067085|ref|YP_007434167.1| - 0.00049 20.3 0.1 0.00097 19.3 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|449067085|ref|YP_007434167.1| - 0.0064 17.1 0.1 0.018 15.6 0.1 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|449067087|ref|YP_007434169.1| - 4.9e-24 85.0 0.0 7.6e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|449067087|ref|YP_007434169.1| - 1.1e-18 67.1 0.1 1.7e-18 66.5 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449067087|ref|YP_007434169.1| - 9.5e-06 25.6 0.0 1.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|449067087|ref|YP_007434169.1| - 0.011 15.2 0.0 0.029 13.7 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|449067087|ref|YP_007434169.1| - 0.04 14.0 0.2 0.17 11.9 0.0 2.1 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|449067087|ref|YP_007434169.1| - 0.055 12.7 0.0 0.091 12.0 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ATPase_2 PF01637.18 gi|449067088|ref|YP_007434170.1| - 2.9e-18 66.6 0.4 2.9e-18 66.6 0.4 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|449067088|ref|YP_007434170.1| - 8.7e-12 45.2 0.4 4.3e-09 36.5 0.1 3.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449067088|ref|YP_007434170.1| - 4e-05 23.9 0.0 0.00011 22.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|449067088|ref|YP_007434170.1| - 7.9e-05 23.1 0.1 0.0002 21.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|449067088|ref|YP_007434170.1| - 0.00084 19.8 0.1 0.012 16.1 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF3388 PF11868.8 gi|449067088|ref|YP_007434170.1| - 0.017 14.5 0.0 6.2 6.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3388) AMP-binding PF00501.28 gi|449067089|ref|YP_007434171.1| - 3e-76 256.7 0.0 3.7e-76 256.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067089|ref|YP_007434171.1| - 9.6e-17 61.7 0.0 2.4e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Hormone_3 PF00159.18 gi|449067089|ref|YP_007434171.1| - 0.077 13.1 0.0 0.24 11.5 0.0 1.8 1 0 0 1 1 1 0 Pancreatic hormone peptide MaoC_dehydratas PF01575.19 gi|449067090|ref|YP_007434172.1| - 2e-15 56.4 0.0 2.9e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|449067090|ref|YP_007434172.1| - 0.0034 17.5 0.0 0.0046 17.1 0.0 1.5 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase CoA_transf_3 PF02515.17 gi|449067091|ref|YP_007434173.1| - 1.9e-90 303.7 0.0 2.3e-90 303.4 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Sulfolobus_pRN PF05584.11 gi|449067091|ref|YP_007434173.1| - 0.11 12.5 0.2 0.24 11.4 0.2 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Fe-ADH PF00465.19 gi|449067092|ref|YP_007434174.1| - 2.3e-45 155.0 0.0 3.4e-45 154.4 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|449067092|ref|YP_007434174.1| - 2e-08 34.3 0.0 2.6e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fer4 PF00037.27 gi|449067093|ref|YP_007434175.1| - 0.00038 20.1 5.0 0.00056 19.6 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449067093|ref|YP_007434175.1| - 0.0014 18.7 3.5 0.0022 18.1 3.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|449067093|ref|YP_007434175.1| - 0.0035 17.9 2.2 0.0057 17.2 2.2 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|449067093|ref|YP_007434175.1| - 0.0042 17.2 2.4 0.0051 16.9 2.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449067093|ref|YP_007434175.1| - 0.0065 17.0 0.3 0.01 16.4 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449067093|ref|YP_007434175.1| - 0.015 15.5 2.8 0.025 14.7 2.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Tox-REase-5 PF15648.6 gi|449067093|ref|YP_007434175.1| - 0.03 14.8 0.2 0.051 14.1 0.2 1.5 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 5 Fer4_2 PF12797.7 gi|449067093|ref|YP_007434175.1| - 0.058 13.5 3.2 0.11 12.7 3.2 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449067093|ref|YP_007434175.1| - 0.49 11.0 5.1 1 10.0 5.1 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain DEAD PF00270.29 gi|449067095|ref|YP_007434177.1| - 1.4e-44 152.0 0.0 4.5e-44 150.3 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|449067095|ref|YP_007434177.1| - 3.7e-32 111.0 0.2 7.3e-31 106.8 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|449067095|ref|YP_007434177.1| - 2.1e-10 40.9 0.0 4.3e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|449067095|ref|YP_007434177.1| - 0.0087 16.4 0.1 0.21 11.9 0.0 2.9 1 1 1 2 2 2 1 AAA domain CMS1 PF14617.6 gi|449067095|ref|YP_007434177.1| - 0.012 14.9 0.0 0.027 13.8 0.0 1.6 1 0 0 1 1 1 0 U3-containing 90S pre-ribosomal complex subunit AAA_22 PF13401.6 gi|449067095|ref|YP_007434177.1| - 0.017 15.4 3.8 0.46 10.8 3.8 2.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|449067095|ref|YP_007434177.1| - 0.03 14.1 0.0 0.087 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain Flavi_DEAD PF07652.14 gi|449067095|ref|YP_007434177.1| - 0.035 14.1 0.0 0.16 11.9 0.0 2.1 1 1 0 1 1 1 0 Flavivirus DEAD domain T4SS-DNA_transf PF02534.14 gi|449067095|ref|YP_007434177.1| - 0.05 12.4 0.0 0.12 11.2 0.0 1.6 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer DUF202 PF02656.15 gi|449067096|ref|YP_007434178.1| - 8.5e-22 77.4 5.9 1.4e-21 76.7 1.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF202) SdpI PF13630.6 gi|449067096|ref|YP_007434178.1| - 0.0088 16.2 4.7 0.014 15.5 0.6 2.1 2 0 0 2 2 2 1 SdpI/YhfL protein family CopD PF05425.13 gi|449067096|ref|YP_007434178.1| - 0.014 15.8 1.7 0.031 14.7 1.7 1.6 1 1 1 2 2 2 0 Copper resistance protein D SfLAP PF11139.8 gi|449067096|ref|YP_007434178.1| - 0.019 14.4 2.6 0.043 13.3 2.6 1.6 1 1 0 1 1 1 0 Sap, sulfolipid-1-addressing protein GRIM-19 PF06212.12 gi|449067096|ref|YP_007434178.1| - 0.22 11.5 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 GRIM-19 protein Tetraspanin PF00335.20 gi|449067096|ref|YP_007434178.1| - 0.47 10.1 4.3 0.19 11.4 0.4 1.8 1 1 0 1 1 1 0 Tetraspanin family EamA PF00892.20 gi|449067097|ref|YP_007434179.1| - 8.2e-24 84.3 44.0 5.6e-18 65.4 15.4 2.3 2 0 0 2 2 2 2 EamA-like transporter family SIS PF01380.22 gi|449067099|ref|YP_007434181.1| - 1.2e-13 51.1 0.1 1.1e-07 31.7 0.1 2.8 2 1 0 2 2 2 2 SIS domain DUF5412 PF17428.2 gi|449067100|ref|YP_007434182.1| - 0.054 13.4 0.2 0.058 13.3 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5412) UvdE PF03851.14 gi|449067101|ref|YP_007434183.1| - 4e-63 213.2 0.2 4.7e-63 213.0 0.2 1.1 1 0 0 1 1 1 1 UV-endonuclease UvdE Aldedh PF00171.22 gi|449067102|ref|YP_007434184.1| - 8e-154 512.6 0.0 9.3e-154 512.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|449067102|ref|YP_007434184.1| - 0.044 13.2 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) PEPCK_GTP PF00821.18 gi|449067103|ref|YP_007434185.1| - 7.2e-107 357.3 0.0 8.8e-107 357.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|449067103|ref|YP_007434185.1| - 6.6e-59 199.1 0.0 9.1e-59 198.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain FolB PF02152.18 gi|449067104|ref|YP_007434186.1| - 4.2e-30 104.5 1.0 5.9e-30 104.1 0.3 1.6 2 0 0 2 2 2 1 Dihydroneopterin aldolase HPPK PF01288.20 gi|449067104|ref|YP_007434186.1| - 1.7e-28 99.4 0.0 2.6e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Prefoldin PF02996.17 gi|449067104|ref|YP_007434186.1| - 0.042 13.7 0.1 0.24 11.3 0.0 2.1 2 0 0 2 2 2 0 Prefoldin subunit IF2_assoc PF08364.11 gi|449067104|ref|YP_007434186.1| - 1.5 9.1 9.2 0.23 11.7 5.0 1.8 2 0 0 2 2 2 0 Bacterial translation initiation factor IF-2 associated region adh_short_C2 PF13561.6 gi|449067105|ref|YP_007434187.1| - 1.6e-27 96.6 0.0 1.8e-27 96.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449067105|ref|YP_007434187.1| - 3.4e-21 75.6 0.0 4.5e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449067105|ref|YP_007434187.1| - 0.091 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 KR domain HpaB_N PF11794.8 gi|449067106|ref|YP_007434188.1| - 6.3e-84 281.9 0.4 8.3e-84 281.5 0.4 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|449067106|ref|YP_007434188.1| - 1.7e-51 174.2 0.0 2.3e-51 173.8 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|449067106|ref|YP_007434188.1| - 0.0005 20.2 0.0 0.0012 19.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain adh_short_C2 PF13561.6 gi|449067107|ref|YP_007434189.1| - 7.2e-52 176.3 0.9 8.8e-52 176.0 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449067107|ref|YP_007434189.1| - 1.1e-50 171.8 2.1 1.5e-50 171.4 2.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449067107|ref|YP_007434189.1| - 4.8e-09 36.4 0.5 6.4e-09 36.0 0.5 1.1 1 0 0 1 1 1 1 KR domain YjeF_N PF03853.15 gi|449067107|ref|YP_007434189.1| - 0.026 14.4 0.2 0.054 13.4 0.2 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus 2-Hacid_dh_C PF02826.19 gi|449067107|ref|YP_007434189.1| - 0.051 12.9 0.2 0.083 12.3 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Wax2_C PF12076.8 gi|449067107|ref|YP_007434189.1| - 0.094 12.4 0.2 0.31 10.7 0.1 1.8 2 0 0 2 2 2 0 WAX2 C-terminal domain Epimerase PF01370.21 gi|449067107|ref|YP_007434189.1| - 0.16 11.4 0.6 0.28 10.6 0.6 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_7 PF13241.6 gi|449067107|ref|YP_007434189.1| - 0.33 11.4 2.1 0.44 11.0 1.5 1.7 2 1 0 2 2 2 0 Putative NAD(P)-binding Abhydrolase_3 PF07859.13 gi|449067108|ref|YP_007434190.1| - 2.9e-62 210.3 0.0 3.5e-62 210.0 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|449067108|ref|YP_007434190.1| - 2.3e-07 30.1 0.0 7e-07 28.5 0.0 1.7 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|449067108|ref|YP_007434190.1| - 0.0021 17.6 0.0 0.0036 16.8 0.0 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|449067109|ref|YP_007434191.1| - 4.5e-08 32.7 0.0 6.5e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|449067109|ref|YP_007434191.1| - 1.2e-05 26.1 0.0 1.6e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|449067109|ref|YP_007434191.1| - 0.0031 17.2 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold 2C_adapt PF08793.10 gi|449067109|ref|YP_007434191.1| - 0.43 10.8 3.6 5.2 7.3 0.9 3.3 2 1 1 3 3 3 0 2-cysteine adaptor domain TetR_N PF00440.23 gi|449067110|ref|YP_007434192.1| - 4.3e-15 55.2 0.1 6.8e-15 54.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Luteo_PO PF04662.13 gi|449067110|ref|YP_007434192.1| - 0.047 13.4 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Luteovirus P0 protein Acyl-CoA_dh_N PF02771.16 gi|449067111|ref|YP_007434193.1| - 1.4e-23 83.7 0.1 2.4e-23 82.9 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449067111|ref|YP_007434193.1| - 5e-20 71.5 0.0 1.1e-19 70.4 0.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|449067111|ref|YP_007434193.1| - 6.1e-16 59.0 0.4 4.8e-14 52.8 0.4 2.2 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.6 gi|449067111|ref|YP_007434193.1| - 0.12 12.9 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal ECH_1 PF00378.20 gi|449067112|ref|YP_007434194.1| - 3.4e-69 232.9 0.0 5.1e-69 232.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|449067112|ref|YP_007434194.1| - 6.6e-65 218.4 0.2 1.2e-64 217.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|449067112|ref|YP_007434194.1| - 1.3e-43 147.5 0.1 2e-23 82.8 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|449067112|ref|YP_007434194.1| - 3.2e-40 138.6 0.2 5.5e-37 128.0 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|449067112|ref|YP_007434194.1| - 0.00053 20.2 0.0 0.0013 19.0 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase SeleniumBinding PF11524.8 gi|449067112|ref|YP_007434194.1| - 0.0043 17.4 0.1 0.028 14.8 0.0 2.4 2 0 0 2 2 2 1 Selenium binding protein Pyr_redox_2 PF07992.14 gi|449067112|ref|YP_007434194.1| - 0.0084 15.4 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|449067112|ref|YP_007434194.1| - 0.013 14.8 0.1 0.024 14.0 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|449067112|ref|YP_007434194.1| - 0.014 15.9 0.0 0.078 13.6 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent adh_short_C2 PF13561.6 gi|449067112|ref|YP_007434194.1| - 0.03 13.9 0.1 0.055 13.0 0.1 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase 2-Hacid_dh_C PF02826.19 gi|449067112|ref|YP_007434194.1| - 0.079 12.3 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|449067112|ref|YP_007434194.1| - 0.12 12.9 0.1 0.51 10.9 0.1 2.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lactamase_B PF00753.27 gi|449067113|ref|YP_007434195.1| - 1.7e-25 90.2 1.7 1e-24 87.6 1.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|449067113|ref|YP_007434195.1| - 0.0061 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|449067113|ref|YP_007434195.1| - 0.0098 15.4 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 gi|449067114|ref|YP_007434196.1| - 5e-74 249.4 0.0 6.2e-74 249.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067114|ref|YP_007434196.1| - 6.1e-21 75.2 0.0 1.7e-20 73.7 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Ribonuc_red_sm PF00268.21 gi|449067115|ref|YP_007434197.1| - 5.9e-19 68.6 0.0 7.4e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Rubrerythrin PF02915.17 gi|449067115|ref|YP_007434197.1| - 6.6e-06 26.6 0.1 0.044 14.2 0.0 2.4 2 0 0 2 2 2 2 Rubrerythrin DUF455 PF04305.14 gi|449067115|ref|YP_007434197.1| - 0.00092 18.8 0.0 0.82 9.2 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF455) Ald_deCOase PF11266.8 gi|449067115|ref|YP_007434197.1| - 0.016 14.9 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Long-chain fatty aldehyde decarbonylase FA_desaturase_2 PF03405.14 gi|449067115|ref|YP_007434197.1| - 0.026 13.4 0.1 0.066 12.1 0.0 1.6 2 0 0 2 2 2 0 Fatty acid desaturase Haem_oxygenas_2 PF14518.6 gi|449067115|ref|YP_007434197.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Iron-containing redox enzyme Acyl-CoA_dh_1 PF00441.24 gi|449067116|ref|YP_007434198.1| - 2.9e-12 47.0 0.0 6.3e-12 46.0 0.0 1.5 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|449067116|ref|YP_007434198.1| - 0.21 11.8 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Thiolase_N PF00108.23 gi|449067117|ref|YP_007434199.1| - 1.7e-66 224.3 0.0 2.2e-66 223.9 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449067117|ref|YP_007434199.1| - 2.7e-45 153.0 0.6 7.2e-45 151.6 0.4 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|449067117|ref|YP_007434199.1| - 2.2e-06 27.4 0.4 2.6e-05 23.9 0.1 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|449067117|ref|YP_007434199.1| - 0.011 14.5 0.0 0.02 13.6 0.0 1.4 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) ADH_N PF08240.12 gi|449067118|ref|YP_007434200.1| - 1.5e-27 95.6 0.1 1.4e-26 92.5 0.0 2.3 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449067118|ref|YP_007434200.1| - 2.3e-20 72.9 0.7 3.8e-20 72.2 0.7 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449067118|ref|YP_007434200.1| - 9.9e-10 39.6 0.2 1.9e-09 38.7 0.0 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|449067118|ref|YP_007434200.1| - 0.0092 15.3 2.1 0.015 14.6 2.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain LDcluster4 PF18306.1 gi|449067118|ref|YP_007434200.1| - 0.01 15.4 1.0 0.017 14.7 1.0 1.3 1 0 0 1 1 1 0 SLOG cluster4 family SIS_2 PF13580.6 gi|449067118|ref|YP_007434200.1| - 0.018 15.0 0.4 0.033 14.2 0.4 1.5 1 0 0 1 1 1 0 SIS domain Epimerase PF01370.21 gi|449067118|ref|YP_007434200.1| - 0.078 12.4 0.3 0.11 11.9 0.3 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ACP_syn_III_C PF08541.10 gi|449067118|ref|YP_007434200.1| - 0.081 13.1 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal adh_short PF00106.25 gi|449067118|ref|YP_007434200.1| - 0.11 11.9 2.8 0.23 10.9 2.7 1.7 1 1 0 1 1 1 0 short chain dehydrogenase CMAS PF02353.20 gi|449067118|ref|YP_007434200.1| - 0.12 11.7 0.2 0.17 11.1 0.2 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Abhydrolase_3 PF07859.13 gi|449067119|ref|YP_007434201.1| - 5.1e-67 225.8 0.0 6.2e-67 225.5 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|449067119|ref|YP_007434201.1| - 3.6e-09 36.0 0.5 1.2e-08 34.4 0.4 1.6 1 1 0 1 1 1 1 Carboxylesterase family Say1_Mug180 PF10340.9 gi|449067119|ref|YP_007434201.1| - 3e-06 26.4 0.0 4e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Steryl acetyl hydrolase Chlorophyllase2 PF12740.7 gi|449067119|ref|YP_007434201.1| - 1.8e-05 23.8 0.0 2.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.11 gi|449067119|ref|YP_007434201.1| - 0.0063 15.6 0.0 0.0086 15.1 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase FGGY_N PF00370.21 gi|449067120|ref|YP_007434202.1| - 1.1e-80 270.7 0.0 1.7e-80 270.2 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|449067120|ref|YP_007434202.1| - 1.5e-57 194.5 0.0 2.7e-57 193.7 0.0 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|449067120|ref|YP_007434202.1| - 0.00048 19.7 0.5 0.19 11.2 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.25 gi|449067120|ref|YP_007434202.1| - 0.23 11.1 0.1 14 5.2 0.0 2.4 2 1 0 2 2 2 0 Glycoprotease family DAO PF01266.24 gi|449067121|ref|YP_007434203.1| - 4.7e-50 171.1 0.0 5.5e-50 170.9 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|449067121|ref|YP_007434203.1| - 1.3e-06 27.8 0.2 9e-05 21.7 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|449067121|ref|YP_007434203.1| - 1.8e-05 24.2 0.3 7.4e-05 22.2 0.5 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|449067121|ref|YP_007434203.1| - 3.3e-05 24.0 1.0 7.9e-05 22.8 0.5 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|449067121|ref|YP_007434203.1| - 9.6e-05 21.7 0.3 0.00026 20.3 0.1 1.6 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|449067121|ref|YP_007434203.1| - 0.0001 21.2 1.5 0.00013 20.9 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|449067121|ref|YP_007434203.1| - 0.00071 20.1 2.2 0.0085 16.6 0.5 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|449067121|ref|YP_007434203.1| - 0.0057 16.0 1.4 0.033 13.6 1.4 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|449067121|ref|YP_007434203.1| - 0.015 14.6 0.8 0.028 13.7 0.2 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|449067121|ref|YP_007434203.1| - 0.02 14.5 0.1 0.038 13.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|449067121|ref|YP_007434203.1| - 0.056 13.9 0.1 1.7 9.2 0.1 2.7 2 1 0 2 2 2 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|449067121|ref|YP_007434203.1| - 0.07 12.2 0.2 0.1 11.6 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.22 gi|449067121|ref|YP_007434203.1| - 0.088 11.9 1.4 0.15 11.2 0.6 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A Thi4 PF01946.17 gi|449067121|ref|YP_007434203.1| - 0.1 11.8 0.1 0.25 10.6 0.1 1.6 1 0 0 1 1 1 0 Thi4 family Trp_halogenase PF04820.14 gi|449067121|ref|YP_007434203.1| - 0.33 9.7 0.5 0.56 9.0 0.5 1.3 1 0 0 1 1 1 0 Tryptophan halogenase COXG PF06240.13 gi|449067122|ref|YP_007434204.1| - 1.9e-34 118.4 0.3 2.1e-34 118.3 0.3 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF3211 PF11485.8 gi|449067122|ref|YP_007434204.1| - 0.0075 16.5 0.3 0.011 16.0 0.3 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3211) Tox-PL-2 PF15643.6 gi|449067122|ref|YP_007434204.1| - 0.058 13.5 0.1 0.082 13.0 0.1 1.3 1 0 0 1 1 1 0 Papain fold toxin 2 DUF35_N PF12172.8 gi|449067123|ref|YP_007434205.1| - 3e-14 52.5 0.1 5.3e-14 51.8 0.1 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|449067123|ref|YP_007434205.1| - 6.4e-13 48.5 0.2 1e-12 47.9 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Auto_anti-p27 PF06677.12 gi|449067123|ref|YP_007434205.1| - 0.037 14.2 2.4 0.091 12.9 2.4 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|449067123|ref|YP_007434205.1| - 0.038 14.0 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CxC5 PF18718.1 gi|449067123|ref|YP_007434205.1| - 0.057 13.5 0.5 0.61 10.2 0.1 2.1 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Hepsin-SRCR PF09272.10 gi|449067123|ref|YP_007434205.1| - 0.076 13.5 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Hepsin, SRCR domain TackOD1 PF18551.1 gi|449067123|ref|YP_007434205.1| - 0.081 12.6 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Thiolase_N PF00108.23 gi|449067124|ref|YP_007434206.1| - 2.6e-30 105.7 0.0 4.7e-30 104.8 0.0 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449067124|ref|YP_007434206.1| - 2.8e-08 33.4 0.1 2.7e-06 27.1 0.1 2.6 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|449067124|ref|YP_007434206.1| - 1.6e-07 31.2 7.1 4.8e-07 29.6 1.0 2.8 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|449067124|ref|YP_007434206.1| - 9e-06 25.5 0.2 0.00034 20.4 0.1 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF2048 PF09752.9 gi|449067124|ref|YP_007434206.1| - 0.026 13.6 0.0 0.052 12.6 0.0 1.4 1 0 0 1 1 1 0 Abhydrolase domain containing 18 FAE1_CUT1_RppA PF08392.12 gi|449067124|ref|YP_007434206.1| - 0.035 13.4 0.0 0.064 12.5 0.0 1.4 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein AMP-binding PF00501.28 gi|449067125|ref|YP_007434207.1| - 5.9e-91 305.2 0.0 6.8e-91 305.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067125|ref|YP_007434207.1| - 1.3e-18 67.8 0.0 2.1e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|449067126|ref|YP_007434208.1| - 3.2e-41 141.0 4.5 5.9e-41 140.2 4.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|449067126|ref|YP_007434208.1| - 2.5e-33 115.1 1.9 4.1e-33 114.4 0.3 2.2 2 1 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449067126|ref|YP_007434208.1| - 4.1e-27 94.2 0.0 9e-27 93.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|449067126|ref|YP_007434208.1| - 1e-18 67.9 2.1 2.2e-18 66.8 2.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain CBM39 PF15886.5 gi|449067126|ref|YP_007434208.1| - 0.032 14.1 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain (family 32) CcdA PF07362.12 gi|449067127|ref|YP_007434209.1| - 0.0076 16.7 0.3 0.019 15.4 0.2 1.7 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA DUF2540 PF10802.8 gi|449067127|ref|YP_007434209.1| - 0.016 15.3 0.7 0.023 14.8 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) RHH_1 PF01402.21 gi|449067127|ref|YP_007434209.1| - 0.066 13.2 1.0 0.13 12.2 0.6 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|449067127|ref|YP_007434209.1| - 0.15 12.1 4.1 0.11 12.5 1.8 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix domain AhpC-TSA PF00578.21 gi|449067128|ref|YP_007434210.1| - 1.4e-36 125.2 0.1 1.6e-36 124.9 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|449067128|ref|YP_007434210.1| - 2.1e-25 89.2 0.0 2.5e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|449067128|ref|YP_007434210.1| - 0.047 13.8 0.0 2.1 8.5 0.0 2.3 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.14 gi|449067128|ref|YP_007434210.1| - 0.11 12.5 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 SCO1/SenC AMP-binding PF00501.28 gi|449067129|ref|YP_007434211.1| - 5.7e-70 236.0 0.0 7.1e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067129|ref|YP_007434211.1| - 2.7e-22 79.5 0.0 5.5e-22 78.5 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AA_permease_2 PF13520.6 gi|449067130|ref|YP_007434212.1| - 2.5e-40 138.6 54.9 2.5e-40 138.6 54.9 3.0 1 1 2 3 3 3 2 Amino acid permease AA_permease PF00324.21 gi|449067130|ref|YP_007434212.1| - 2.1e-27 95.9 60.5 2.1e-27 95.9 60.5 2.3 1 1 1 2 2 2 1 Amino acid permease DUF87 PF01935.17 gi|449067131|ref|YP_007434213.1| - 1.7e-28 100.2 0.2 4.4e-28 98.9 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|449067131|ref|YP_007434213.1| - 1.1e-09 37.7 0.4 0.00021 20.4 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|449067131|ref|YP_007434213.1| - 1.7e-08 34.9 0.9 1.7e-05 25.2 0.2 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|449067131|ref|YP_007434213.1| - 1.6e-07 30.6 0.0 3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|449067131|ref|YP_007434213.1| - 1.3e-06 27.3 0.2 0.0019 16.9 0.0 2.4 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|449067131|ref|YP_007434213.1| - 5.7e-06 26.7 0.1 0.09 13.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|449067131|ref|YP_007434213.1| - 6.6e-05 22.4 0.0 0.00016 21.1 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family NACHT PF05729.12 gi|449067131|ref|YP_007434213.1| - 0.00055 19.9 0.5 0.097 12.6 0.1 2.4 2 0 0 2 2 2 1 NACHT domain DEAD PF00270.29 gi|449067131|ref|YP_007434213.1| - 0.00097 18.9 0.0 0.037 13.8 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_21 PF13304.6 gi|449067131|ref|YP_007434213.1| - 0.0011 18.8 0.1 0.095 12.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Zot PF05707.12 gi|449067131|ref|YP_007434213.1| - 0.0014 18.3 0.4 0.0022 17.7 0.0 1.5 2 0 0 2 2 1 1 Zonular occludens toxin (Zot) ResIII PF04851.15 gi|449067131|ref|YP_007434213.1| - 0.0014 18.6 0.1 0.31 11.0 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|449067131|ref|YP_007434213.1| - 0.002 18.7 0.0 0.0042 17.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 gi|449067131|ref|YP_007434213.1| - 0.0023 17.5 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|449067131|ref|YP_007434213.1| - 0.0024 17.9 2.1 0.58 10.2 0.1 3.0 2 1 1 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|449067131|ref|YP_007434213.1| - 0.0027 17.5 4.8 0.011 15.5 4.8 1.9 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|449067131|ref|YP_007434213.1| - 0.0039 16.3 0.2 0.0093 15.0 0.2 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein G-alpha PF00503.20 gi|449067131|ref|YP_007434213.1| - 0.0041 16.3 0.1 0.007 15.6 0.1 1.3 1 0 0 1 1 1 1 G-protein alpha subunit AAA_19 PF13245.6 gi|449067131|ref|YP_007434213.1| - 0.0043 17.4 0.0 0.18 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|449067131|ref|YP_007434213.1| - 0.011 15.2 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|449067131|ref|YP_007434213.1| - 0.015 15.0 0.0 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|449067131|ref|YP_007434213.1| - 0.017 14.8 0.1 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|449067131|ref|YP_007434213.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|449067131|ref|YP_007434213.1| - 0.019 14.7 0.0 0.048 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Septin PF00735.18 gi|449067131|ref|YP_007434213.1| - 0.032 13.5 0.1 0.055 12.7 0.1 1.3 1 0 0 1 1 1 0 Septin cobW PF02492.19 gi|449067131|ref|YP_007434213.1| - 0.034 13.7 0.1 0.068 12.8 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.12 gi|449067131|ref|YP_007434213.1| - 0.035 13.6 2.2 0.047 13.1 0.1 2.2 2 1 0 2 2 2 0 Poxvirus A32 protein Gtr1_RagA PF04670.12 gi|449067131|ref|YP_007434213.1| - 0.036 13.4 0.1 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region DUF2075 PF09848.9 gi|449067131|ref|YP_007434213.1| - 0.05 12.8 0.1 4.7 6.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.6 gi|449067131|ref|YP_007434213.1| - 0.051 14.1 0.4 0.094 13.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_16 PF13191.6 gi|449067131|ref|YP_007434213.1| - 0.054 13.9 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|449067131|ref|YP_007434213.1| - 0.062 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TniB PF05621.11 gi|449067131|ref|YP_007434213.1| - 0.083 12.3 0.4 8 5.8 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein PFO_beta_C PF12367.8 gi|449067131|ref|YP_007434213.1| - 0.15 12.2 0.1 0.46 10.6 0.1 1.8 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Roc PF08477.13 gi|449067131|ref|YP_007434213.1| - 0.17 12.1 0.2 0.33 11.2 0.2 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase NurA PF09376.10 gi|449067132|ref|YP_007434214.1| - 2.1e-10 40.7 0.2 2.7e-10 40.3 0.2 1.2 1 0 0 1 1 1 1 NurA domain SspH PF08141.12 gi|449067132|ref|YP_007434214.1| - 0.065 13.4 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Small acid-soluble spore protein H family Phosphoesterase PF04185.14 gi|449067134|ref|YP_007434216.1| - 1.7e-71 241.3 5.0 3.1e-71 240.4 5.0 1.4 1 1 0 1 1 1 1 Phosphoesterase family Metallophos PF00149.28 gi|449067135|ref|YP_007434217.1| - 9.8e-10 39.3 0.3 2.2e-09 38.1 0.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|449067135|ref|YP_007434217.1| - 2.3e-09 37.7 0.0 4.1e-09 36.9 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|449067135|ref|YP_007434217.1| - 2.9e-05 23.5 0.1 6.2e-05 22.4 0.1 1.5 2 0 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily WIYLD PF10440.9 gi|449067135|ref|YP_007434217.1| - 0.13 12.1 0.1 1.7 8.5 0.0 2.5 3 0 0 3 3 3 0 Ubiquitin-binding WIYLD domain ATPase_2 PF01637.18 gi|449067136|ref|YP_007434218.1| - 3.6e-16 59.8 0.0 5.9e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|449067136|ref|YP_007434218.1| - 6.4e-08 32.7 0.5 2.7e-06 27.4 0.0 2.8 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|449067136|ref|YP_007434218.1| - 2.5e-06 27.8 0.1 5.9e-06 26.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|449067136|ref|YP_007434218.1| - 5.1e-06 27.0 0.1 1.8e-05 25.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|449067136|ref|YP_007434218.1| - 0.0099 16.2 0.0 0.036 14.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|449067136|ref|YP_007434218.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 NTPase DUF815 PF05673.13 gi|449067136|ref|YP_007434218.1| - 0.043 13.0 0.1 0.088 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF4423 PF14394.6 gi|449067136|ref|YP_007434218.1| - 0.058 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AAA_7 PF12775.7 gi|449067136|ref|YP_007434218.1| - 0.059 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|449067136|ref|YP_007434218.1| - 0.11 12.9 0.0 0.25 11.8 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|449067136|ref|YP_007434218.1| - 0.15 11.3 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|449067136|ref|YP_007434218.1| - 0.15 11.1 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ECH_1 PF00378.20 gi|449067137|ref|YP_007434219.1| - 8.8e-69 231.6 0.0 1.3e-68 231.0 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|449067137|ref|YP_007434219.1| - 3.6e-63 212.7 0.3 6.6e-63 211.8 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|449067137|ref|YP_007434219.1| - 4.6e-45 152.2 0.1 4.6e-23 81.6 0.0 2.7 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|449067137|ref|YP_007434219.1| - 2.8e-41 142.1 0.1 9.6e-37 127.2 0.0 2.4 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|449067137|ref|YP_007434219.1| - 0.0034 17.6 0.0 0.0095 16.1 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|449067137|ref|YP_007434219.1| - 0.0042 16.3 0.0 0.0075 15.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|449067137|ref|YP_007434219.1| - 0.0084 16.1 0.1 0.038 14.0 0.0 2.2 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|449067137|ref|YP_007434219.1| - 0.03 14.9 0.0 0.19 12.3 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|449067137|ref|YP_007434219.1| - 0.039 14.4 0.0 0.17 12.3 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding adh_short PF00106.25 gi|449067137|ref|YP_007434219.1| - 0.066 12.7 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Pyr_redox PF00070.27 gi|449067137|ref|YP_007434219.1| - 0.09 13.3 0.2 0.37 11.4 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|449067137|ref|YP_007434219.1| - 0.12 11.7 0.0 1.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FlaC_arch PF05377.11 gi|449067137|ref|YP_007434219.1| - 0.12 12.7 0.1 0.39 11.2 0.1 1.9 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ThiF PF00899.21 gi|449067137|ref|YP_007434219.1| - 0.19 11.1 0.0 0.34 10.2 0.0 1.4 1 0 0 1 1 1 0 ThiF family Sugar_tr PF00083.24 gi|449067138|ref|YP_007434220.1| - 4.3e-42 144.5 24.5 5.2e-42 144.2 24.5 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067138|ref|YP_007434220.1| - 3.5e-29 101.8 46.9 2.3e-25 89.3 25.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|449067138|ref|YP_007434220.1| - 9.6e-07 28.4 7.9 9.6e-07 28.4 7.9 2.2 2 0 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB TPP_enzyme_N PF02776.18 gi|449067139|ref|YP_007434221.1| - 1.8e-44 151.4 0.0 7.6e-44 149.3 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|449067139|ref|YP_007434221.1| - 1e-38 132.2 0.0 1.9e-38 131.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|449067139|ref|YP_007434221.1| - 9.2e-25 87.2 0.0 1e-23 83.9 0.0 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO_dh PF02552.16 gi|449067139|ref|YP_007434221.1| - 0.032 14.0 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit CENP-B_N PF04218.13 gi|449067139|ref|YP_007434221.1| - 0.062 12.9 0.7 0.14 11.8 0.7 1.6 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain VKOR PF07884.14 gi|449067140|ref|YP_007434222.1| - 1.3e-26 93.2 16.8 1.5e-26 93.0 16.8 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family DUF4229 PF14012.6 gi|449067140|ref|YP_007434222.1| - 1.2 9.3 7.4 0.34 11.0 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) HRG PF16954.5 gi|449067140|ref|YP_007434222.1| - 1.4 9.3 8.5 0.58 10.6 2.9 2.9 2 1 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene OppC_N PF12911.7 gi|449067140|ref|YP_007434222.1| - 8.5 6.4 8.2 14 5.8 3.7 2.4 2 1 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Radical_SAM PF04055.21 gi|449067144|ref|YP_007434226.1| - 3.2e-10 40.6 0.0 4.2e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|449067144|ref|YP_007434226.1| - 0.013 15.6 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1848 PF08902.11 gi|449067144|ref|YP_007434226.1| - 0.13 11.9 5.2 9.9 5.8 5.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Nre_N PF04894.12 gi|449067145|ref|YP_007434227.1| - 4e-95 318.7 0.0 5.1e-95 318.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|449067145|ref|YP_007434227.1| - 2.4e-37 127.2 0.2 5.3e-37 126.1 0.1 1.6 2 0 0 2 2 2 1 Archaeal Nre, C-terminal LigB PF02900.18 gi|449067146|ref|YP_007434228.1| - 3.8e-17 62.2 0.0 4e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ald_Xan_dh_C2 PF02738.18 gi|449067147|ref|YP_007434229.1| - 2.1e-05 23.2 0.0 2.1e-05 23.2 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Pro-kuma_activ PF09286.11 gi|449067148|ref|YP_007434230.1| - 2.4e-11 44.1 0.1 2e-10 41.1 0.0 2.3 2 0 0 2 2 2 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|449067148|ref|YP_007434230.1| - 6e-07 29.0 0.1 1.8e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 Subtilase family MG2 PF01835.19 gi|449067148|ref|YP_007434230.1| - 8.2e-05 23.0 0.3 1.5 9.3 0.0 4.2 5 1 0 5 5 5 2 MG2 domain FlgD_ig PF13860.6 gi|449067148|ref|YP_007434230.1| - 0.087 12.7 5.5 1.8 8.5 0.0 4.6 5 0 0 5 5 5 0 FlgD Ig-like domain Stevor PF17410.2 gi|449067148|ref|YP_007434230.1| - 2.7 7.5 4.8 4.7 6.7 4.8 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame PNGaseA PF12222.8 gi|449067149|ref|YP_007434231.1| - 2e-33 115.9 3.4 9.8e-32 110.4 3.4 2.1 1 1 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A AMP-binding PF00501.28 gi|449067150|ref|YP_007434232.1| - 1.5e-70 237.9 0.0 2e-70 237.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067150|ref|YP_007434232.1| - 1.3e-27 96.5 0.4 2.3e-27 95.7 0.4 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain tRNA_edit PF04073.15 gi|449067151|ref|YP_007434233.1| - 2.4e-28 98.7 0.0 2.8e-28 98.5 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain YscO PF07321.12 gi|449067152|ref|YP_007434234.1| - 0.0065 16.4 0.6 0.0074 16.3 0.6 1.1 1 0 0 1 1 1 1 Type III secretion protein YscO Cas_St_Csn2 PF16813.5 gi|449067152|ref|YP_007434234.1| - 0.0068 15.6 0.6 0.0068 15.6 0.6 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Csn2 subfamily St COMM_domain PF07258.14 gi|449067152|ref|YP_007434234.1| - 0.012 15.7 0.6 0.32 11.1 0.3 2.2 2 0 0 2 2 2 0 COMM domain DUF948 PF06103.11 gi|449067152|ref|YP_007434234.1| - 0.017 15.4 0.0 0.019 15.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) YtxH PF12732.7 gi|449067152|ref|YP_007434234.1| - 0.025 15.1 0.4 0.038 14.5 0.4 1.5 1 1 0 1 1 1 0 YtxH-like protein DegS PF05384.11 gi|449067152|ref|YP_007434234.1| - 0.028 13.9 2.0 0.036 13.6 1.3 1.6 1 1 0 1 1 1 0 Sensor protein DegS Glu-tRNAGln PF02686.15 gi|449067152|ref|YP_007434234.1| - 0.039 14.2 2.0 0.052 13.9 2.0 1.2 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit HisKA PF00512.25 gi|449067152|ref|YP_007434234.1| - 0.056 13.5 1.1 0.056 13.5 1.1 1.7 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain YojJ PF10372.9 gi|449067152|ref|YP_007434234.1| - 0.061 13.4 1.6 0.12 12.4 1.6 1.8 1 1 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus RRF PF01765.19 gi|449067152|ref|YP_007434234.1| - 0.064 13.2 1.6 0.068 13.1 1.6 1.1 1 0 0 1 1 1 0 Ribosome recycling factor Baculo_PEP_C PF04513.12 gi|449067152|ref|YP_007434234.1| - 0.1 12.6 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3391 PF11871.8 gi|449067152|ref|YP_007434234.1| - 0.11 13.0 0.0 0.13 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) CorA PF01544.18 gi|449067152|ref|YP_007434234.1| - 0.12 11.7 3.7 0.65 9.2 0.9 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Golgin_A5 PF09787.9 gi|449067152|ref|YP_007434234.1| - 0.13 11.7 1.0 0.15 11.5 1.0 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 FlaC_arch PF05377.11 gi|449067152|ref|YP_007434234.1| - 0.17 12.3 2.2 0.37 11.2 1.0 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|449067152|ref|YP_007434234.1| - 0.2 11.7 0.9 0.24 11.4 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) TraF_2 PF13729.6 gi|449067152|ref|YP_007434234.1| - 0.77 9.1 5.1 0.85 8.9 5.1 1.0 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein TnpW PF14202.6 gi|449067152|ref|YP_007434234.1| - 2 8.3 4.5 7.6 6.4 0.7 2.4 1 1 1 2 2 2 0 Transposon-encoded protein TnpW Epimerase PF01370.21 gi|449067153|ref|YP_007434235.1| - 2e-09 37.3 0.0 7.3e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|449067153|ref|YP_007434235.1| - 1.1e-07 31.9 0.0 1.4e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|449067153|ref|YP_007434235.1| - 2.7e-06 26.7 0.0 1.2e-05 24.6 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|449067153|ref|YP_007434235.1| - 1.6e-05 24.0 0.1 9.4e-05 21.5 0.1 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|449067153|ref|YP_007434235.1| - 6.3e-05 22.6 0.0 7.9e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|449067153|ref|YP_007434235.1| - 0.00078 18.9 0.0 0.00091 18.7 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|449067153|ref|YP_007434235.1| - 0.01 15.3 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.20 gi|449067153|ref|YP_007434235.1| - 0.017 15.3 0.1 0.029 14.5 0.0 1.5 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus GATase PF00117.28 gi|449067154|ref|YP_007434236.1| - 1.5e-18 67.3 0.0 2.1e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449067154|ref|YP_007434236.1| - 1.8e-06 27.9 0.1 8.2e-06 25.7 0.0 2.0 2 0 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|449067154|ref|YP_007434236.1| - 0.0014 18.5 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|449067154|ref|YP_007434236.1| - 0.038 13.6 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain HTS PF04204.16 gi|449067154|ref|YP_007434236.1| - 0.083 11.8 0.0 0.14 11.1 0.0 1.3 1 1 0 1 1 1 0 Homoserine O-succinyltransferase ADC PF06314.11 gi|449067155|ref|YP_007434237.1| - 5.4e-57 193.1 0.0 6.8e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) SecA_SW PF07516.13 gi|449067157|ref|YP_007434239.1| - 0.056 13.5 0.0 7.3 6.6 0.0 2.8 2 1 1 3 3 3 0 SecA Wing and Scaffold domain L27 PF02828.16 gi|449067157|ref|YP_007434239.1| - 0.11 12.3 0.0 0.32 10.8 0.0 1.8 1 0 0 1 1 1 0 L27 domain Methyltransf_24 PF13578.6 gi|449067160|ref|YP_007434242.1| - 2.3e-11 44.7 0.0 3.1e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|449067160|ref|YP_007434242.1| - 1.5e-05 24.3 0.0 1.7e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase CmcI PF04989.12 gi|449067160|ref|YP_007434242.1| - 3.3e-05 23.7 0.0 4.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Cephalosporin hydroxylase TylF PF05711.11 gi|449067160|ref|YP_007434242.1| - 0.0085 15.4 0.0 0.02 14.2 0.0 1.6 2 0 0 2 2 2 1 Macrocin-O-methyltransferase (TylF) Peptidase_U32_C PF16325.5 gi|449067160|ref|YP_007434242.1| - 0.084 13.2 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Peptidase family U32 C-terminal domain Glyco_hydro_31 PF01055.26 gi|449067162|ref|YP_007434244.1| - 1.9e-128 429.4 2.4 2.5e-128 429.0 2.4 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|449067162|ref|YP_007434244.1| - 1.1e-21 76.9 0.2 2.9e-21 75.6 0.2 1.8 1 0 0 1 1 1 1 Galactose mutarotase-like GHL15 PF14885.6 gi|449067162|ref|YP_007434244.1| - 0.033 14.2 0.1 0.062 13.2 0.1 1.4 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 Retrotrans_gag PF03732.17 gi|449067162|ref|YP_007434244.1| - 0.081 13.2 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 Retrotransposon gag protein Regulator_TrmB PF11495.8 gi|449067163|ref|YP_007434245.1| - 2.2e-67 226.7 1.6 2.7e-67 226.4 1.6 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|449067163|ref|YP_007434245.1| - 1.7e-12 47.0 0.1 4.1e-12 45.8 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|449067163|ref|YP_007434245.1| - 0.026 14.5 0.0 0.057 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family Glyco_hydro_57 PF03065.15 gi|449067164|ref|YP_007434246.1| - 1.5e-41 142.7 1.1 3.7e-34 118.4 0.0 2.5 1 1 1 2 2 2 2 Glycosyl hydrolase family 57 DUF2057 PF09829.9 gi|449067164|ref|YP_007434246.1| - 0.12 12.5 0.5 0.37 10.9 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2057) CBM53 PF16760.5 gi|449067164|ref|YP_007434246.1| - 3.3 8.4 17.4 2.7 8.6 0.2 3.2 3 0 0 3 3 3 0 Starch/carbohydrate-binding module (family 53) BPD_transp_1 PF00528.22 gi|449067165|ref|YP_007434247.1| - 1.3e-14 54.4 22.6 1.3e-14 54.4 22.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|449067166|ref|YP_007434248.1| - 5e-16 59.0 23.6 5e-16 59.0 23.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|449067166|ref|YP_007434248.1| - 0.03 14.4 2.8 0.067 13.3 2.8 1.5 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters DUF4083 PF13314.6 gi|449067167|ref|YP_007434249.1| - 0.014 15.3 2.0 0.026 14.5 2.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) SP_C-Propep PF08999.10 gi|449067167|ref|YP_007434249.1| - 0.042 13.6 0.7 0.079 12.7 0.7 1.4 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide Zn_peptidase PF04228.13 gi|449067167|ref|YP_007434249.1| - 0.043 13.3 0.1 0.076 12.5 0.1 1.3 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase DUF4834 PF16118.5 gi|449067167|ref|YP_007434249.1| - 0.099 13.6 0.0 0.24 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) DUF2116 PF09889.9 gi|449067167|ref|YP_007434249.1| - 0.11 12.5 0.5 0.19 11.7 0.5 1.4 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) SpoIIIAH PF12685.7 gi|449067167|ref|YP_007434249.1| - 0.71 9.7 4.8 0.072 12.9 0.4 1.5 2 0 0 2 2 2 0 SpoIIIAH-like protein ABC_tran PF00005.27 gi|449067168|ref|YP_007434250.1| - 2.6e-33 115.4 0.0 5.4e-33 114.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|449067168|ref|YP_007434250.1| - 1.1e-13 51.8 0.1 1.1e-12 48.6 0.1 2.6 2 0 0 2 2 2 1 MalK OB fold domain CysA_C_terminal PF17850.1 gi|449067168|ref|YP_007434250.1| - 1.1e-07 32.3 0.0 4.1e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|449067168|ref|YP_007434250.1| - 1.3e-07 31.8 0.0 0.012 15.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|449067168|ref|YP_007434250.1| - 1.6e-07 31.4 0.0 3.8e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|449067168|ref|YP_007434250.1| - 9.5e-06 25.2 1.0 0.00022 20.7 1.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|449067168|ref|YP_007434250.1| - 0.00055 19.9 0.1 0.0018 18.3 0.0 1.9 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|449067168|ref|YP_007434250.1| - 0.00092 19.2 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|449067168|ref|YP_007434250.1| - 0.0021 18.0 0.4 0.012 15.5 0.1 2.2 2 1 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|449067168|ref|YP_007434250.1| - 0.0082 16.7 3.7 0.014 15.9 0.1 2.4 3 0 0 3 3 2 1 AAA domain ABC_ATPase PF09818.9 gi|449067168|ref|YP_007434250.1| - 0.0083 15.0 0.5 4.8 5.9 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class NTPase_1 PF03266.15 gi|449067168|ref|YP_007434250.1| - 0.0094 15.9 0.0 4 7.3 0.0 2.5 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.6 gi|449067168|ref|YP_007434250.1| - 0.012 15.7 0.1 0.094 12.7 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA_16 PF13191.6 gi|449067168|ref|YP_007434250.1| - 0.019 15.3 0.1 0.035 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|449067168|ref|YP_007434250.1| - 0.02 14.6 0.1 0.045 13.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|449067168|ref|YP_007434250.1| - 0.06 12.9 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|449067168|ref|YP_007434250.1| - 0.063 13.2 0.2 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|449067168|ref|YP_007434250.1| - 0.074 12.8 0.1 0.39 10.4 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|449067168|ref|YP_007434250.1| - 0.077 13.3 0.2 0.22 11.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|449067168|ref|YP_007434250.1| - 0.098 11.7 0.0 0.19 10.7 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DLIC PF05783.11 gi|449067168|ref|YP_007434250.1| - 0.14 11.0 0.1 0.22 10.3 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 gi|449067168|ref|YP_007434250.1| - 0.17 12.1 0.0 0.45 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain CBS PF00571.28 gi|449067169|ref|YP_007434251.1| - 3.2e-28 98.0 4.7 1.6e-13 50.9 0.3 2.1 2 0 0 2 2 2 2 CBS domain HAMP_N3 PF18575.1 gi|449067169|ref|YP_007434251.1| - 0.022 14.3 0.1 0.044 13.4 0.1 1.5 1 0 0 1 1 1 0 HAMP N-terminal domain 3 YopE PF03545.13 gi|449067169|ref|YP_007434251.1| - 0.042 14.0 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 Yersinia virulence determinant (YopE) DisA_N PF02457.16 gi|449067169|ref|YP_007434251.1| - 0.11 12.1 0.1 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Sigma70_r3 PF04539.16 gi|449067170|ref|YP_007434252.1| - 0.004 17.2 0.0 0.0072 16.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70 region 3 Pyr_redox_2 PF07992.14 gi|449067171|ref|YP_007434253.1| - 5.5e-39 134.2 2.2 6.3e-39 133.9 2.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449067171|ref|YP_007434253.1| - 2.4e-19 69.7 2.4 9.7e-16 57.9 0.4 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449067171|ref|YP_007434253.1| - 4.3e-08 33.6 5.4 3.4e-06 27.5 0.2 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|449067171|ref|YP_007434253.1| - 5.8e-08 32.7 1.8 8.3e-05 22.3 0.4 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|449067171|ref|YP_007434253.1| - 1.2e-07 31.2 2.7 7.5e-06 25.3 0.3 3.0 2 1 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|449067171|ref|YP_007434253.1| - 2.6e-05 23.8 0.2 0.00011 21.6 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|449067171|ref|YP_007434253.1| - 4.5e-05 22.8 0.4 0.013 14.8 0.1 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.6 gi|449067171|ref|YP_007434253.1| - 5.6e-05 23.3 0.1 0.00011 22.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|449067171|ref|YP_007434253.1| - 6.5e-05 22.2 0.1 6.5e-05 22.2 0.1 3.4 2 2 2 4 4 4 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|449067171|ref|YP_007434253.1| - 0.001 17.9 0.9 0.026 13.2 0.0 2.6 3 0 0 3 3 3 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|449067171|ref|YP_007434253.1| - 0.0029 16.7 0.3 0.18 10.8 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|449067171|ref|YP_007434253.1| - 0.061 12.6 0.0 0.092 12.0 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain FMO-like PF00743.19 gi|449067171|ref|YP_007434253.1| - 0.075 11.4 0.1 0.68 8.3 0.0 2.2 2 1 1 3 3 3 0 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|449067171|ref|YP_007434253.1| - 0.097 12.0 0.4 0.46 9.7 0.0 2.2 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain FLgD_tudor PF13861.6 gi|449067171|ref|YP_007434253.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 FlgD Tudor-like domain PMSR PF01625.21 gi|449067172|ref|YP_007434254.1| - 3.7e-65 218.8 0.6 4.4e-65 218.5 0.6 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase HTH_45 PF14947.6 gi|449067173|ref|YP_007434255.1| - 3.6e-10 39.7 8.0 1.2e-06 28.4 0.3 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_24 PF13412.6 gi|449067173|ref|YP_007434255.1| - 5.9e-09 35.4 5.6 0.00015 21.2 0.6 3.1 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|449067173|ref|YP_007434255.1| - 1.7e-07 31.0 0.3 3.7e-06 26.7 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|449067173|ref|YP_007434255.1| - 1.8e-06 27.8 0.1 6e-06 26.1 0.1 1.9 2 0 0 2 2 1 1 MarR family MarR_2 PF12802.7 gi|449067173|ref|YP_007434255.1| - 4.4e-06 26.5 0.0 0.001 18.9 0.0 2.4 2 0 0 2 2 2 1 MarR family DUF4364 PF14277.6 gi|449067173|ref|YP_007434255.1| - 1.7e-05 24.7 5.3 0.00036 20.3 0.1 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|449067173|ref|YP_007434255.1| - 1.9e-05 25.0 0.3 9e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|449067173|ref|YP_007434255.1| - 2.9e-05 24.0 0.0 0.047 13.8 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.12 gi|449067173|ref|YP_007434255.1| - 4.8e-05 23.2 4.3 0.014 15.3 0.3 2.9 3 0 0 3 3 2 2 HTH domain Rrf2 PF02082.20 gi|449067173|ref|YP_007434255.1| - 0.0002 21.6 0.6 0.01 16.2 0.0 2.5 2 0 0 2 2 2 1 Transcriptional regulator HxlR PF01638.17 gi|449067173|ref|YP_007434255.1| - 0.0003 20.6 1.8 0.021 14.7 0.1 2.5 2 1 0 2 2 2 1 HxlR-like helix-turn-helix HTH_23 PF13384.6 gi|449067173|ref|YP_007434255.1| - 0.0019 17.9 0.0 0.027 14.3 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_10 PF04967.12 gi|449067173|ref|YP_007434255.1| - 0.0041 16.9 0.7 0.023 14.5 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Mga PF08280.11 gi|449067173|ref|YP_007434255.1| - 0.0043 17.1 6.3 0.019 15.0 0.8 2.9 3 0 0 3 3 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 gi|449067173|ref|YP_007434255.1| - 0.0065 16.2 0.9 1.6 8.5 0.1 2.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|449067173|ref|YP_007434255.1| - 0.011 15.6 0.1 0.094 12.7 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|449067173|ref|YP_007434255.1| - 0.021 14.5 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Replic_Relax PF13814.6 gi|449067173|ref|YP_007434255.1| - 0.025 14.6 0.0 2 8.4 0.0 2.2 2 0 0 2 2 2 0 Replication-relaxation PadR PF03551.14 gi|449067173|ref|YP_007434255.1| - 0.03 14.3 0.5 0.82 9.7 0.1 2.6 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family RuvB_C PF05491.13 gi|449067173|ref|YP_007434255.1| - 0.048 13.5 4.2 3.2 7.7 0.4 2.6 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_psq PF05225.16 gi|449067173|ref|YP_007434255.1| - 0.05 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MerR_1 PF13411.6 gi|449067173|ref|YP_007434255.1| - 0.064 13.4 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_29 PF13551.6 gi|449067173|ref|YP_007434255.1| - 0.065 13.3 0.0 4 7.5 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix Peptidase_C23 PF05379.11 gi|449067173|ref|YP_007434255.1| - 0.08 13.1 0.1 0.27 11.4 0.1 1.9 1 1 0 1 1 1 0 Carlavirus endopeptidase TFIIE_alpha PF02002.17 gi|449067173|ref|YP_007434255.1| - 0.084 12.7 3.0 8.4 6.3 0.9 2.6 2 1 0 2 2 2 0 TFIIE alpha subunit HTH_17 PF12728.7 gi|449067173|ref|YP_007434255.1| - 0.095 12.9 0.2 0.5 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 gi|449067173|ref|YP_007434255.1| - 0.1 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Fe_dep_repress PF01325.19 gi|449067173|ref|YP_007434255.1| - 0.11 12.7 0.7 0.58 10.4 0.0 2.5 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|449067173|ref|YP_007434255.1| - 0.11 12.8 0.8 0.19 12.1 0.1 1.6 2 0 0 2 2 1 0 Penicillinase repressor HTH_28 PF13518.6 gi|449067173|ref|YP_007434255.1| - 0.12 12.6 0.0 0.39 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|449067173|ref|YP_007434255.1| - 0.64 10.3 7.1 0.57 10.5 0.2 3.4 3 1 0 3 3 3 0 NUMOD1 domain T2SSF PF00482.23 gi|449067174|ref|YP_007434256.1| - 1.8e-13 50.5 2.4 9.6e-09 35.3 0.1 3.0 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Auxin_canalis PF05703.11 gi|449067174|ref|YP_007434256.1| - 0.048 13.6 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Auxin canalisation Orf78 PF06024.12 gi|449067174|ref|YP_007434256.1| - 9.4 6.6 9.0 4.8 7.5 1.5 2.8 2 0 0 2 2 2 0 Orf78 (ac78) T2SSE PF00437.20 gi|449067175|ref|YP_007434257.1| - 5.9e-47 160.0 0.0 8.4e-47 159.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|449067175|ref|YP_007434257.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|449067175|ref|YP_007434257.1| - 0.032 14.8 0.0 0.096 13.2 0.0 1.8 2 0 0 2 2 2 0 ABC transporter FtsK_SpoIIIE PF01580.18 gi|449067175|ref|YP_007434257.1| - 0.047 13.0 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|449067175|ref|YP_007434257.1| - 0.067 13.7 0.4 0.067 13.7 0.4 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|449067175|ref|YP_007434257.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|449067175|ref|YP_007434257.1| - 0.13 12.5 0.0 0.36 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF3300 PF11737.8 gi|449067175|ref|YP_007434257.1| - 0.15 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3300) ATPase PF06745.13 gi|449067176|ref|YP_007434258.1| - 2.5e-21 76.1 0.9 3e-21 75.8 0.9 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|449067176|ref|YP_007434258.1| - 1.2e-07 31.3 1.9 0.0068 15.6 0.6 2.0 1 1 1 2 2 2 2 PAXNEB protein DUF835 PF05763.12 gi|449067176|ref|YP_007434258.1| - 0.00029 20.6 3.3 0.00035 20.3 2.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF835) RecA PF00154.21 gi|449067176|ref|YP_007434258.1| - 0.0021 17.6 0.8 0.11 11.9 0.1 2.4 3 0 0 3 3 3 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|449067176|ref|YP_007434258.1| - 0.0054 16.5 1.2 0.041 13.6 0.2 2.2 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|449067176|ref|YP_007434258.1| - 0.0056 16.3 0.0 0.012 15.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|449067176|ref|YP_007434258.1| - 0.0064 15.8 0.1 0.016 14.5 0.1 1.7 1 1 0 1 1 1 1 Rad51 Elong_Iki1 PF10483.9 gi|449067176|ref|YP_007434258.1| - 0.0079 15.7 0.2 0.0092 15.5 0.2 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 AAA_10 PF12846.7 gi|449067176|ref|YP_007434258.1| - 0.031 13.2 0.1 0.04 12.8 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_7 PF12775.7 gi|449067176|ref|YP_007434258.1| - 0.047 13.2 0.0 1.8 8.0 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region TniB PF05621.11 gi|449067176|ref|YP_007434258.1| - 0.074 12.5 0.3 3.5 7.0 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|449067176|ref|YP_007434258.1| - 0.098 12.6 2.0 0.3 11.0 2.0 1.9 1 1 0 1 1 1 0 NTPase NOGCT PF08155.11 gi|449067176|ref|YP_007434258.1| - 0.11 12.5 1.4 0.68 10.0 0.1 2.2 2 0 0 2 2 2 0 NOGCT (NUC087) domain Sigma54_activat PF00158.26 gi|449067176|ref|YP_007434258.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2075 PF09848.9 gi|449067176|ref|YP_007434258.1| - 0.17 11.1 0.2 0.26 10.5 0.2 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|449067176|ref|YP_007434258.1| - 0.19 12.1 0.0 0.34 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF2393 PF09624.10 gi|449067177|ref|YP_007434259.1| - 0.00018 21.6 1.9 0.00025 21.1 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) CARDB PF07705.11 gi|449067177|ref|YP_007434259.1| - 0.021 15.1 0.7 0.038 14.2 0.7 1.4 1 1 0 1 1 1 0 CARDB FtsH_ext PF06480.15 gi|449067177|ref|YP_007434259.1| - 0.043 14.2 3.9 0.079 13.3 3.9 1.3 1 0 0 1 1 1 0 FtsH Extracellular Arch_flagellin PF01917.16 gi|449067178|ref|YP_007434260.1| - 1.9e-12 47.7 7.8 2.2e-12 47.4 7.8 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Pilin_N PF07790.11 gi|449067178|ref|YP_007434260.1| - 0.0041 18.0 9.9 0.01 16.7 9.9 1.7 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF1262 PF06880.11 gi|449067178|ref|YP_007434260.1| - 0.28 11.6 1.9 0.46 10.9 1.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1262) Not3 PF04065.15 gi|449067179|ref|YP_007434261.1| - 0.0037 16.7 6.6 0.012 15.0 6.6 1.8 1 1 0 1 1 1 1 Not1 N-terminal domain, CCR4-Not complex component DUF4834 PF16118.5 gi|449067179|ref|YP_007434261.1| - 0.0098 16.8 0.3 0.022 15.7 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4834) Hemagglutinin PF00509.18 gi|449067179|ref|YP_007434261.1| - 0.011 14.2 2.6 0.015 13.7 2.6 1.2 1 0 0 1 1 1 0 Haemagglutinin CdvA PF18822.1 gi|449067179|ref|YP_007434261.1| - 0.016 15.0 4.4 0.016 15.0 4.4 1.8 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Baculo_PEP_C PF04513.12 gi|449067179|ref|YP_007434261.1| - 0.021 14.9 5.0 0.14 12.2 1.7 2.5 2 1 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Gp-FAR-1 PF05823.12 gi|449067179|ref|YP_007434261.1| - 0.038 14.3 2.9 2.7 8.3 0.0 2.3 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Vitellogenin_N PF01347.22 gi|449067179|ref|YP_007434261.1| - 0.04 12.3 7.4 0.14 10.6 7.4 1.7 1 1 0 1 1 1 0 Lipoprotein amino terminal region Phage_XkdX PF09693.10 gi|449067179|ref|YP_007434261.1| - 0.073 13.1 0.1 0.26 11.3 0.1 1.9 1 1 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) TAF6_C PF07571.13 gi|449067179|ref|YP_007434261.1| - 0.11 12.9 0.3 1.9 8.9 0.1 2.3 2 0 0 2 2 2 0 TAF6 C-terminal HEAT repeat domain DUF1418 PF07214.12 gi|449067179|ref|YP_007434261.1| - 0.14 12.0 0.1 0.33 10.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1418) HSBP1 PF06825.12 gi|449067179|ref|YP_007434261.1| - 0.14 12.0 1.2 0.33 10.8 1.2 1.6 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Fib_alpha PF08702.10 gi|449067179|ref|YP_007434261.1| - 1.1 9.4 12.4 0.065 13.4 4.1 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DASH_Dad1 PF08649.10 gi|449067179|ref|YP_007434261.1| - 2.4 8.4 5.3 2 8.7 1.5 2.6 3 0 0 3 3 3 0 DASH complex subunit Dad1 Arch_flagellin PF01917.16 gi|449067180|ref|YP_007434262.1| - 9.6e-21 74.7 7.0 5.1e-20 72.3 7.0 2.1 1 1 0 1 1 1 1 Archaebacterial flagellin HTH_24 PF13412.6 gi|449067182|ref|YP_007434264.1| - 1e-08 34.6 0.6 0.00015 21.2 0.6 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|449067182|ref|YP_007434264.1| - 4.2e-08 33.0 0.0 8.7e-06 25.5 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449067182|ref|YP_007434264.1| - 5.3e-08 32.6 0.0 0.0021 17.9 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|449067182|ref|YP_007434264.1| - 1.6e-07 31.1 0.5 2.7e-06 27.2 0.2 2.4 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|449067182|ref|YP_007434264.1| - 3.4e-07 30.2 3.7 7.1e-06 25.9 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|449067182|ref|YP_007434264.1| - 4.7e-07 29.7 1.5 0.012 15.6 0.3 2.5 2 0 0 2 2 2 2 HTH domain HTH_20 PF12840.7 gi|449067182|ref|YP_007434264.1| - 7.2e-06 26.0 0.0 0.045 13.8 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.6 gi|449067182|ref|YP_007434264.1| - 4.2e-05 24.0 0.0 8.4e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|449067182|ref|YP_007434264.1| - 8.1e-05 22.3 0.0 0.00091 19.0 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|449067182|ref|YP_007434264.1| - 0.00011 22.1 0.0 0.0064 16.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|449067182|ref|YP_007434264.1| - 0.00013 21.9 0.0 0.16 12.0 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|449067182|ref|YP_007434264.1| - 0.00047 19.9 0.0 0.00091 19.0 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 gi|449067182|ref|YP_007434264.1| - 0.0017 18.1 0.0 0.0033 17.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family GntR PF00392.21 gi|449067182|ref|YP_007434264.1| - 0.002 17.7 0.0 0.33 10.6 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_psq PF05225.16 gi|449067182|ref|YP_007434264.1| - 0.0036 17.0 0.0 0.007 16.1 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain NUMOD1 PF07453.13 gi|449067182|ref|YP_007434264.1| - 0.0056 16.9 0.7 0.12 12.7 0.0 2.6 2 0 0 2 2 2 1 NUMOD1 domain HTH_7 PF02796.15 gi|449067182|ref|YP_007434264.1| - 0.0059 16.7 0.1 0.18 11.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Mga PF08280.11 gi|449067182|ref|YP_007434264.1| - 0.0082 16.1 1.3 0.43 10.6 0.1 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 gi|449067182|ref|YP_007434264.1| - 0.01 15.9 0.0 0.032 14.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|449067182|ref|YP_007434264.1| - 0.011 15.6 0.1 0.5 10.3 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_17 PF12728.7 gi|449067182|ref|YP_007434264.1| - 0.021 15.0 0.6 0.08 13.1 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain RWP-RK PF02042.15 gi|449067182|ref|YP_007434264.1| - 0.022 14.7 0.1 0.22 11.5 0.1 2.3 1 1 0 1 1 1 0 RWP-RK domain Sigma70_r4_2 PF08281.12 gi|449067182|ref|YP_007434264.1| - 0.023 14.4 0.3 0.18 11.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 MerR_1 PF13411.6 gi|449067182|ref|YP_007434264.1| - 0.028 14.5 0.0 0.073 13.2 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_10 PF04967.12 gi|449067182|ref|YP_007434264.1| - 0.033 14.0 0.3 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain UPF0122 PF04297.14 gi|449067182|ref|YP_007434264.1| - 0.033 14.4 0.2 0.71 10.1 0.1 2.4 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Rrf2 PF02082.20 gi|449067182|ref|YP_007434264.1| - 0.052 13.9 0.3 0.2 12.0 0.1 1.9 2 0 0 2 2 2 0 Transcriptional regulator SelB-wing_3 PF09107.11 gi|449067182|ref|YP_007434264.1| - 0.053 13.2 0.9 4.9 6.9 0.1 2.7 3 0 0 3 3 2 0 Elongation factor SelB, winged helix HTH_3 PF01381.22 gi|449067182|ref|YP_007434264.1| - 0.056 13.5 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix Penicillinase_R PF03965.16 gi|449067182|ref|YP_007434264.1| - 0.071 13.5 1.0 0.15 12.4 0.2 1.8 2 0 0 2 2 2 0 Penicillinase repressor HTH_DeoR PF08220.12 gi|449067182|ref|YP_007434264.1| - 0.086 12.6 0.2 7.2 6.4 0.0 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 gi|449067182|ref|YP_007434264.1| - 0.09 12.7 0.0 1.3 9.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family SMC_ScpB PF04079.16 gi|449067182|ref|YP_007434264.1| - 0.091 12.4 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB MerR PF00376.23 gi|449067182|ref|YP_007434264.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein Linker_histone PF00538.19 gi|449067182|ref|YP_007434264.1| - 0.14 12.6 0.4 16 6.0 0.1 2.4 2 0 0 2 2 2 0 linker histone H1 and H5 family Pkinase PF00069.25 gi|449067183|ref|YP_007434265.1| - 7.4e-35 120.6 0.0 1e-34 120.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|449067183|ref|YP_007434265.1| - 1.9e-14 53.6 0.0 5.6e-14 52.1 0.0 1.8 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|449067183|ref|YP_007434265.1| - 0.019 14.3 0.0 0.055 12.8 0.0 1.6 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-like PF14531.6 gi|449067183|ref|YP_007434265.1| - 0.026 13.8 0.1 0.35 10.1 0.1 2.1 1 1 0 1 1 1 0 Kinase-like GTF2I PF02946.14 gi|449067183|ref|YP_007434265.1| - 0.036 14.1 0.0 0.11 12.5 0.0 1.8 1 0 0 1 1 1 0 GTF2I-like repeat FTA2 PF13095.6 gi|449067183|ref|YP_007434265.1| - 0.042 13.5 0.1 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Kinetochore Sim4 complex subunit FTA2 MFS_1 PF07690.16 gi|449067184|ref|YP_007434266.1| - 7.3e-60 202.8 66.0 4e-48 164.2 48.8 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067184|ref|YP_007434266.1| - 8.7e-13 47.9 32.9 4.3e-11 42.3 13.1 3.1 2 1 0 2 2 2 2 Sugar (and other) transporter NDUF_B12 PF08122.12 gi|449067184|ref|YP_007434266.1| - 0.09 12.8 1.0 7.6 6.7 0.0 2.9 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family OATP PF03137.20 gi|449067184|ref|YP_007434266.1| - 1.5 7.0 25.7 0.022 13.0 3.7 4.0 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family NPCBM_assoc PF10633.9 gi|449067185|ref|YP_007434267.1| - 1e-16 60.9 21.7 0.0046 17.2 0.1 9.5 9 1 1 10 10 10 5 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|449067185|ref|YP_007434267.1| - 9.2e-05 22.7 41.5 0.065 13.5 2.5 8.1 6 2 2 9 9 9 4 CARDB DUF11 PF01345.18 gi|449067185|ref|YP_007434267.1| - 0.0032 17.7 2.0 0.0032 17.7 2.0 8.1 6 4 1 8 8 8 1 Domain of unknown function DUF11 DUF5044 PF16447.5 gi|449067185|ref|YP_007434267.1| - 0.0078 16.1 2.5 1.3 8.8 0.0 4.7 4 2 2 6 6 6 1 Domain of unknown function (DUF5044) Gryzun PF07919.12 gi|449067185|ref|YP_007434267.1| - 0.028 13.2 0.0 0.18 10.6 0.0 2.3 4 0 0 4 4 4 0 Gryzun, putative trafficking through Golgi RIFIN PF02009.16 gi|449067185|ref|YP_007434267.1| - 5.5 6.8 5.8 8.7 6.1 5.8 1.3 1 0 0 1 1 1 0 Rifin AMP-binding PF00501.28 gi|449067186|ref|YP_007434268.1| - 3.3e-83 279.6 0.0 4.4e-83 279.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067186|ref|YP_007434268.1| - 1.1e-21 77.6 0.2 2.2e-21 76.6 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|449067186|ref|YP_007434268.1| - 3.7e-18 65.2 1.6 7.3e-18 64.2 1.6 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus MFS_1 PF07690.16 gi|449067187|ref|YP_007434269.1| - 0.032 13.2 55.6 0.012 14.6 17.2 3.5 1 1 1 2 2 2 0 Major Facilitator Superfamily MarR PF01047.22 gi|449067188|ref|YP_007434270.1| - 1.9e-07 30.9 0.2 3.4e-07 30.1 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|449067188|ref|YP_007434270.1| - 2.8e-06 27.4 0.2 3.4e-06 27.1 0.2 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|449067188|ref|YP_007434270.1| - 8.6e-06 26.2 0.2 1.3e-05 25.6 0.1 1.4 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|449067188|ref|YP_007434270.1| - 1e-05 25.0 2.7 1.8e-05 24.2 2.7 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|449067188|ref|YP_007434270.1| - 2.6e-05 24.0 0.3 4.9e-05 23.1 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|449067188|ref|YP_007434270.1| - 3.9e-05 23.5 0.2 7.3e-05 22.7 0.1 1.6 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|449067188|ref|YP_007434270.1| - 5.6e-05 23.0 0.0 7.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449067188|ref|YP_007434270.1| - 0.00061 19.6 0.4 0.0011 18.8 0.1 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Crp PF00325.20 gi|449067188|ref|YP_007434270.1| - 0.0025 17.4 0.6 0.01 15.5 0.6 2.0 1 1 0 1 1 1 1 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|449067188|ref|YP_007434270.1| - 0.011 16.1 0.1 0.016 15.5 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|449067188|ref|YP_007434270.1| - 0.022 14.5 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 LexA DNA binding domain GntR PF00392.21 gi|449067188|ref|YP_007434270.1| - 0.026 14.2 0.3 0.044 13.4 0.2 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|449067188|ref|YP_007434270.1| - 0.028 14.4 0.5 0.052 13.5 0.5 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|449067188|ref|YP_007434270.1| - 0.03 14.3 0.6 0.047 13.6 0.6 1.4 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 gi|449067188|ref|YP_007434270.1| - 0.038 13.7 0.3 0.097 12.4 0.2 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|449067188|ref|YP_007434270.1| - 0.11 12.6 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RNA_pol_Rpb2_6 PF00562.28 gi|449067188|ref|YP_007434270.1| - 0.11 11.5 0.0 0.11 11.5 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 6 HTH_36 PF13730.6 gi|449067188|ref|YP_007434270.1| - 0.11 12.5 0.2 0.16 11.9 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|449067188|ref|YP_007434270.1| - 0.16 11.8 0.6 0.23 11.3 0.6 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain IU_nuc_hydro PF01156.19 gi|449067189|ref|YP_007434271.1| - 2.9e-74 250.4 0.0 3.2e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase FAD_binding_4 PF01565.23 gi|449067190|ref|YP_007434272.1| - 1.3e-37 128.6 0.0 2e-37 128.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|449067190|ref|YP_007434272.1| - 6.3e-25 88.2 0.0 8.8e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_5 PF00941.21 gi|449067190|ref|YP_007434272.1| - 0.05 13.3 0.1 0.14 11.9 0.1 1.6 1 1 0 1 1 1 0 FAD binding domain in molybdopterin dehydrogenase FAD_binding_4 PF01565.23 gi|449067191|ref|YP_007434273.1| - 3.2e-07 30.2 0.0 6e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain AIRC PF00731.20 gi|449067192|ref|YP_007434274.1| - 1.1e-67 226.2 0.6 1.2e-67 226.1 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|449067192|ref|YP_007434274.1| - 0.00075 19.3 0.0 0.00091 19.0 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|449067192|ref|YP_007434274.1| - 0.0053 15.6 0.2 0.0088 14.9 0.1 1.3 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Glutaredoxin PF00462.24 gi|449067192|ref|YP_007434274.1| - 0.012 15.8 0.1 0.039 14.2 0.0 1.8 2 0 0 2 2 2 0 Glutaredoxin DAGK_cat PF00781.24 gi|449067192|ref|YP_007434274.1| - 0.013 15.1 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain DUF4419 PF14388.6 gi|449067192|ref|YP_007434274.1| - 0.05 13.0 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4419) Radical_SAM PF04055.21 gi|449067192|ref|YP_007434274.1| - 0.2 12.0 0.0 5.3 7.4 0.0 2.2 1 1 1 2 2 2 0 Radical SAM superfamily ATP-grasp PF02222.22 gi|449067193|ref|YP_007434275.1| - 1.6e-48 164.5 0.0 2.4e-48 164.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|449067193|ref|YP_007434275.1| - 8.3e-15 54.2 0.1 1.6e-14 53.3 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|449067193|ref|YP_007434275.1| - 0.0021 18.2 0.0 0.0039 17.3 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain Fungal_KA1 PF16797.5 gi|449067193|ref|YP_007434275.1| - 0.038 13.7 0.0 0.077 12.7 0.0 1.4 1 0 0 1 1 1 0 Fungal kinase associated-1 domain HTH_1 PF00126.27 gi|449067194|ref|YP_007434276.1| - 2.2e-05 24.3 0.0 5.2e-05 23.1 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2089 PF09862.9 gi|449067194|ref|YP_007434276.1| - 0.098 12.7 0.1 0.15 12.1 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) Nsp1_C PF05064.13 gi|449067194|ref|YP_007434276.1| - 0.11 12.3 0.9 0.11 12.3 0.9 1.5 2 0 0 2 2 2 0 Nsp1-like C-terminal region SpmSyn_N PF17950.1 gi|449067194|ref|YP_007434276.1| - 0.11 12.6 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase N -terminal Pkinase PF00069.25 gi|449067195|ref|YP_007434277.1| - 2.8e-27 95.8 1.1 5.7e-27 94.7 0.0 2.0 3 0 0 3 3 3 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|449067195|ref|YP_007434277.1| - 2e-10 40.4 0.0 4.5e-10 39.3 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase TPR_19 PF14559.6 gi|449067195|ref|YP_007434277.1| - 1e-09 38.8 0.3 1e-05 26.0 0.1 2.9 2 1 1 3 3 3 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|449067195|ref|YP_007434277.1| - 3.6e-08 33.5 6.5 8.7e-07 29.1 0.8 2.5 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|449067195|ref|YP_007434277.1| - 3.1e-07 30.6 1.8 0.21 11.9 0.0 3.9 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|449067195|ref|YP_007434277.1| - 5.9e-07 29.1 7.8 0.017 15.2 0.0 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|449067195|ref|YP_007434277.1| - 2.1e-06 27.3 7.9 0.052 13.4 0.1 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|449067195|ref|YP_007434277.1| - 6e-06 26.7 0.0 1.2 10.1 0.0 3.6 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|449067195|ref|YP_007434277.1| - 2.3e-05 24.9 0.0 3.3 8.5 0.0 3.3 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|449067195|ref|YP_007434277.1| - 2.8e-05 24.0 3.0 0.065 13.5 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|449067195|ref|YP_007434277.1| - 0.00037 20.9 1.3 11 6.9 0.0 4.9 4 0 0 4 4 4 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|449067195|ref|YP_007434277.1| - 0.0072 16.0 0.0 0.76 9.4 0.0 2.7 2 1 1 3 3 3 1 Bacterial type III secretion protein (HrpB1_HrpK) DUF1955 PF09205.10 gi|449067195|ref|YP_007434277.1| - 0.016 15.0 1.5 0.062 13.0 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1955) GP3_package PF16677.5 gi|449067195|ref|YP_007434277.1| - 0.016 15.3 1.5 0.065 13.4 0.4 2.3 2 0 0 2 2 2 0 DNA-packaging protein gp3 TPR_7 PF13176.6 gi|449067195|ref|YP_007434277.1| - 0.031 14.3 2.7 12 6.2 0.0 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|449067195|ref|YP_007434277.1| - 0.044 13.7 4.6 0.39 10.7 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.20 gi|449067195|ref|YP_007434277.1| - 0.046 14.0 3.9 47 4.5 0.0 5.0 5 0 0 5 5 5 0 PPR repeat Coatomer_E PF04733.14 gi|449067195|ref|YP_007434277.1| - 0.048 13.1 0.2 0.19 11.1 0.0 1.9 2 0 0 2 2 2 0 Coatomer epsilon subunit APH PF01636.23 gi|449067195|ref|YP_007434277.1| - 0.13 12.2 0.0 15 5.4 0.0 2.3 2 0 0 2 2 2 0 Phosphotransferase enzyme family Wzy_C_2 PF11846.8 gi|449067195|ref|YP_007434277.1| - 0.16 11.9 0.0 2.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal TPR_11 PF13414.6 gi|449067195|ref|YP_007434277.1| - 0.27 10.9 5.5 0.54 10.0 0.7 3.5 4 0 0 4 4 4 0 TPR repeat Ribonuc_L-PSP PF01042.21 gi|449067197|ref|YP_007434279.1| - 3.6e-42 143.2 0.0 3.9e-42 143.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP CBS PF00571.28 gi|449067198|ref|YP_007434280.1| - 4.2e-44 148.8 15.3 1.8e-14 53.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain GDE_C PF06202.14 gi|449067199|ref|YP_007434281.1| - 6.6e-114 380.8 0.0 9.6e-114 380.3 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|449067199|ref|YP_007434281.1| - 6.5e-52 176.1 0.7 9.4e-52 175.6 0.7 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Bac_rhamnosid6H PF17389.2 gi|449067199|ref|YP_007434281.1| - 0.00025 20.4 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF5507 PF17612.2 gi|449067199|ref|YP_007434281.1| - 0.13 11.9 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5507) Glyco_hydro_15 PF00723.21 gi|449067200|ref|YP_007434282.1| - 5.7e-18 64.9 0.6 4.8e-14 52.0 1.2 3.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 NTP_transferase PF00483.23 gi|449067201|ref|YP_007434283.1| - 2.7e-41 141.8 0.0 3.4e-41 141.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|449067201|ref|YP_007434283.1| - 4.3e-06 26.2 8.1 0.06 13.1 0.2 4.7 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|449067201|ref|YP_007434283.1| - 5e-05 21.6 3.1 0.0002 19.7 3.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4954) NTP_transf_3 PF12804.7 gi|449067201|ref|YP_007434283.1| - 5.9e-05 23.5 0.0 0.00012 22.5 0.0 1.6 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|449067201|ref|YP_007434283.1| - 0.13 11.2 0.7 7 5.5 0.2 2.8 2 1 1 3 3 3 0 L-fucokinase Hexapep_2 PF14602.6 gi|449067201|ref|YP_007434283.1| - 0.64 9.8 4.1 8.6 6.2 0.1 3.0 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase Glyco_hydro_57 PF03065.15 gi|449067202|ref|YP_007434284.1| - 2.9e-72 243.6 4.2 5e-72 242.8 4.2 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_transf_5 PF08323.11 gi|449067203|ref|YP_007434285.1| - 3.9e-31 108.6 0.1 6.5e-31 107.9 0.1 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|449067203|ref|YP_007434285.1| - 3.7e-28 98.2 0.0 7e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067203|ref|YP_007434285.1| - 3.3e-22 79.4 0.0 7.6e-22 78.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|449067203|ref|YP_007434285.1| - 5.4e-09 36.3 4.3 1.6e-07 31.5 3.7 2.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|449067203|ref|YP_007434285.1| - 1.9e-05 25.2 0.5 0.0003 21.3 0.5 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|449067203|ref|YP_007434285.1| - 0.0031 17.9 0.0 0.023 15.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|449067203|ref|YP_007434285.1| - 0.079 13.0 0.1 4.3 7.4 0.0 2.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like Oxidored_molyb PF00174.19 gi|449067204|ref|YP_007434286.1| - 1.1e-37 129.3 0.0 1.3e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cpn60_TCP1 PF00118.24 gi|449067205|ref|YP_007434287.1| - 2.2e-159 531.2 21.7 2.6e-159 531.0 21.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family WIYLD PF10440.9 gi|449067206|ref|YP_007434288.1| - 0.061 13.1 0.0 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain SinI PF08671.10 gi|449067206|ref|YP_007434288.1| - 0.091 12.6 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Anti-repressor SinI Methyltransf_11 PF08241.12 gi|449067207|ref|YP_007434289.1| - 9.6e-05 23.0 0.0 0.0041 17.8 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449067207|ref|YP_007434289.1| - 0.044 13.1 0.0 0.069 12.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|449067207|ref|YP_007434289.1| - 0.074 13.8 0.0 0.67 10.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain DNA_gyraseA_C PF03989.13 gi|449067207|ref|YP_007434289.1| - 0.12 11.9 0.2 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller CBS PF00571.28 gi|449067208|ref|YP_007434290.1| - 1.7e-18 66.8 0.1 3.7e-09 36.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain AP_endonuc_2 PF01261.24 gi|449067208|ref|YP_007434290.1| - 0.021 14.3 0.0 0.024 14.1 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DSBA PF01323.20 gi|449067209|ref|YP_007434291.1| - 6e-22 78.4 1.0 3.4e-21 75.9 1.0 1.9 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 gi|449067209|ref|YP_007434291.1| - 5.5e-21 75.1 0.3 7.3e-21 74.7 0.3 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|449067209|ref|YP_007434291.1| - 4.3e-08 33.5 1.6 1.1e-05 25.7 1.6 2.2 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|449067209|ref|YP_007434291.1| - 0.00012 22.0 0.1 0.0039 17.2 0.0 2.4 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|449067209|ref|YP_007434291.1| - 0.00061 20.2 1.7 0.021 15.3 1.7 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain ArnB_C PF18677.1 gi|449067210|ref|YP_007434292.1| - 5.1e-24 84.2 3.7 5.1e-24 84.2 3.7 1.8 2 0 0 2 2 2 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|449067210|ref|YP_007434292.1| - 7.3e-15 55.7 0.1 1.6e-14 54.5 0.1 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|449067210|ref|YP_007434292.1| - 5.7e-09 36.1 0.0 1.7e-08 34.6 0.0 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|449067210|ref|YP_007434292.1| - 2.1e-07 31.5 0.0 5.8e-07 30.1 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain FHA PF00498.26 gi|449067211|ref|YP_007434293.1| - 1.4e-16 60.6 0.1 2.9e-16 59.6 0.1 1.6 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|449067211|ref|YP_007434293.1| - 1.9e-09 37.7 0.0 3.3e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zinc_ribbon_2 PF13240.6 gi|449067211|ref|YP_007434293.1| - 1.8e-06 27.5 3.2 3e-06 26.8 3.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|449067211|ref|YP_007434293.1| - 0.0014 17.9 1.6 0.0022 17.3 1.6 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|449067211|ref|YP_007434293.1| - 0.0021 18.0 1.5 0.0036 17.3 1.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|449067211|ref|YP_007434293.1| - 0.029 13.8 1.1 0.049 13.1 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|449067211|ref|YP_007434293.1| - 0.16 11.7 3.7 2.2 8.1 3.7 2.4 1 1 0 1 1 1 0 A2L zinc ribbon domain TFIIA PF03153.13 gi|449067211|ref|YP_007434293.1| - 1.4 8.8 12.1 1.8 8.5 12.1 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit ArnB_C PF18677.1 gi|449067212|ref|YP_007434294.1| - 2.2e-27 95.0 10.6 2.2e-27 95.0 10.6 1.8 2 0 0 2 2 2 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|449067212|ref|YP_007434294.1| - 1.6e-17 64.3 0.1 5.9e-17 62.5 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|449067212|ref|YP_007434294.1| - 4.2e-13 49.9 0.2 4.4e-12 46.6 0.0 2.4 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|449067212|ref|YP_007434294.1| - 5e-09 36.3 0.0 1.2e-08 35.1 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|449067212|ref|YP_007434294.1| - 3e-05 23.5 0.0 7.9e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein MazE_antitoxin PF04014.18 gi|449067213|ref|YP_007434295.1| - 5.2e-08 32.6 0.9 5.9e-08 32.5 0.9 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|449067213|ref|YP_007434295.1| - 0.0058 17.1 0.3 0.0072 16.8 0.3 1.0 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin eIF-1a PF01176.19 gi|449067213|ref|YP_007434295.1| - 0.0062 16.3 1.5 0.0084 15.9 1.5 1.3 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF402 PF04167.13 gi|449067214|ref|YP_007434296.1| - 3e-14 52.9 2.2 8.4e-14 51.5 1.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|449067214|ref|YP_007434296.1| - 0.014 14.9 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease E/G family ATPase PF06745.13 gi|449067214|ref|YP_007434296.1| - 0.015 14.7 0.1 0.92 8.8 0.0 2.2 2 0 0 2 2 2 0 KaiC Aconitase PF00330.20 gi|449067215|ref|YP_007434297.1| - 5.5e-163 543.2 0.0 7.4e-163 542.8 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|449067215|ref|YP_007434297.1| - 6.8e-36 123.5 0.0 1.6e-35 122.3 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain Cas_DxTHG PF09455.10 gi|449067216|ref|YP_007434298.1| - 8e-26 91.5 7.3 1.2e-25 90.9 7.3 1.3 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF2258 PF10015.9 gi|449067217|ref|YP_007434299.1| - 3.1e-25 88.1 3.3 3.1e-25 88.1 3.3 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) TMF_DNA_bd PF12329.8 gi|449067217|ref|YP_007434299.1| - 0.013 15.5 8.8 0.013 15.5 8.8 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DASH_Duo1 PF08651.10 gi|449067217|ref|YP_007434299.1| - 0.014 15.1 1.1 0.038 13.7 1.0 1.8 2 0 0 2 2 2 0 DASH complex subunit Duo1 LPP PF04728.13 gi|449067217|ref|YP_007434299.1| - 0.028 14.8 1.9 0.059 13.8 0.5 2.1 2 0 0 2 2 2 0 Lipoprotein leucine-zipper AAA_23 PF13476.6 gi|449067217|ref|YP_007434299.1| - 0.042 14.3 6.1 0.055 14.0 6.1 1.2 1 0 0 1 1 1 0 AAA domain DUF4140 PF13600.6 gi|449067217|ref|YP_007434299.1| - 0.059 13.8 0.7 0.15 12.5 0.7 1.7 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) NPV_P10 PF05531.12 gi|449067217|ref|YP_007434299.1| - 0.1 13.0 1.1 0.1 13.0 1.1 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DASH_Hsk3 PF08227.11 gi|449067217|ref|YP_007434299.1| - 0.15 12.5 0.4 0.29 11.5 0.4 1.5 1 0 0 1 1 1 0 DASH complex subunit Hsk3 like DASH_Dad4 PF08650.10 gi|449067217|ref|YP_007434299.1| - 0.2 11.6 3.9 0.81 9.7 0.9 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad4 HDV_ag PF01517.18 gi|449067217|ref|YP_007434299.1| - 0.68 9.7 2.5 2.5 7.9 1.7 2.0 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen MetOD2 PF18548.1 gi|449067217|ref|YP_007434299.1| - 3.1 7.9 10.1 2 8.6 3.1 2.5 1 1 1 2 2 2 0 Metanogen output domain 2 DHHA1 PF02272.19 gi|449067217|ref|YP_007434299.1| - 5.1 7.5 10.0 0.74 10.2 2.8 2.5 2 1 0 2 2 2 0 DHHA1 domain Pox_A_type_inc PF04508.12 gi|449067217|ref|YP_007434299.1| - 7.7 6.5 8.2 1.1 9.3 0.8 3.1 2 1 1 3 3 3 0 Viral A-type inclusion protein repeat DUF1275 PF06912.11 gi|449067218|ref|YP_007434300.1| - 0.1 12.5 7.3 0.17 11.8 7.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1275) MtrC PF04211.13 gi|449067218|ref|YP_007434300.1| - 0.17 10.9 15.4 0.51 9.3 14.9 1.8 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C PrgI PF12666.7 gi|449067218|ref|YP_007434300.1| - 0.53 11.0 7.7 0.43 11.3 6.8 1.4 1 1 0 1 1 1 0 PrgI family protein FUN14 PF04930.15 gi|449067218|ref|YP_007434300.1| - 0.79 10.2 11.1 15 6.1 11.1 2.1 1 1 0 1 1 1 0 FUN14 family CBP_BcsG PF11658.8 gi|449067218|ref|YP_007434300.1| - 0.81 8.0 2.4 0.92 7.8 2.4 1.1 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG SPC12 PF06645.13 gi|449067218|ref|YP_007434300.1| - 0.89 9.7 12.3 0.82 9.8 7.9 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF3487 PF11990.8 gi|449067218|ref|YP_007434300.1| - 4.2 7.3 12.3 1 9.3 9.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF4389 PF14333.6 gi|449067218|ref|YP_007434300.1| - 4.2 7.4 11.5 2.5 8.1 7.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4389) Clostridium_P47 PF06597.11 gi|449067218|ref|YP_007434300.1| - 6.6 5.3 8.5 8.1 5.0 8.5 1.0 1 0 0 1 1 1 0 Clostridium P-47 protein Fig1 PF12351.8 gi|449067218|ref|YP_007434300.1| - 9.6 6.1 10.5 1.6 8.6 6.3 1.7 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 FtsX PF02687.21 gi|449067218|ref|YP_007434300.1| - 10 6.7 17.1 1.2e+03 0.1 17.1 2.3 1 1 0 1 1 1 0 FtsX-like permease family Ribosomal_60s PF00428.19 gi|449067219|ref|YP_007434301.1| - 0.8 10.3 12.6 4.1 8.1 0.1 2.3 2 0 0 2 2 2 0 60s Acidic ribosomal protein TrmB PF01978.19 gi|449067220|ref|YP_007434302.1| - 2.2e-10 40.3 0.4 3.3e-10 39.7 0.4 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|449067220|ref|YP_007434302.1| - 2.6e-09 36.9 1.6 3.1e-09 36.6 1.6 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|449067220|ref|YP_007434302.1| - 6.6e-08 32.3 0.0 1.4e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|449067220|ref|YP_007434302.1| - 3.3e-06 26.6 0.3 5.8e-06 25.8 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|449067220|ref|YP_007434302.1| - 5.9e-06 26.1 0.3 1.2e-05 25.1 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|449067220|ref|YP_007434302.1| - 5.1e-05 23.1 1.4 0.00011 22.0 0.3 1.9 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|449067220|ref|YP_007434302.1| - 0.00011 22.1 0.1 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|449067220|ref|YP_007434302.1| - 0.00017 21.3 0.1 0.00034 20.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|449067220|ref|YP_007434302.1| - 0.0002 21.0 0.7 0.00051 19.7 0.2 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|449067220|ref|YP_007434302.1| - 0.00023 21.0 0.0 0.00038 20.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|449067220|ref|YP_007434302.1| - 0.00029 20.4 1.1 0.0022 17.6 0.0 2.2 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|449067220|ref|YP_007434302.1| - 0.00052 20.2 0.1 0.0012 18.9 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|449067220|ref|YP_007434302.1| - 0.00076 19.9 0.1 0.0012 19.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain CvfB_WH PF17783.1 gi|449067220|ref|YP_007434302.1| - 0.0036 17.1 0.1 0.0074 16.1 0.1 1.6 1 0 0 1 1 1 1 CvfB-like winged helix domain TBPIP PF07106.13 gi|449067220|ref|YP_007434302.1| - 0.0068 16.3 0.2 0.015 15.2 0.2 1.5 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain Rrf2 PF02082.20 gi|449067220|ref|YP_007434302.1| - 0.007 16.7 0.1 0.012 15.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Mga PF08280.11 gi|449067220|ref|YP_007434302.1| - 0.0076 16.3 0.1 0.016 15.2 0.1 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_6 PF01418.17 gi|449067220|ref|YP_007434302.1| - 0.0096 15.9 0.4 0.017 15.1 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family Penicillinase_R PF03965.16 gi|449067220|ref|YP_007434302.1| - 0.019 15.3 0.1 0.035 14.5 0.0 1.6 2 0 0 2 2 1 0 Penicillinase repressor HTH_36 PF13730.6 gi|449067220|ref|YP_007434302.1| - 0.019 14.9 0.4 0.068 13.1 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|449067220|ref|YP_007434302.1| - 0.021 14.5 1.1 0.027 14.2 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) GerE PF00196.19 gi|449067220|ref|YP_007434302.1| - 0.022 14.3 0.0 0.043 13.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FeoC PF09012.10 gi|449067220|ref|YP_007434302.1| - 0.025 14.6 0.1 0.048 13.7 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator RuvB_C PF05491.13 gi|449067220|ref|YP_007434302.1| - 0.031 14.1 0.2 0.072 13.0 0.1 1.6 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain RTP PF02334.16 gi|449067220|ref|YP_007434302.1| - 0.035 14.7 0.8 0.045 14.4 0.8 1.3 1 0 0 1 1 1 0 Replication terminator protein HTH_IclR PF09339.10 gi|449067220|ref|YP_007434302.1| - 0.036 13.9 0.0 0.068 13.0 0.0 1.5 2 0 0 2 2 1 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|449067220|ref|YP_007434302.1| - 0.036 14.2 0.3 0.071 13.3 0.1 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain Pigment_DH PF06324.11 gi|449067220|ref|YP_007434302.1| - 0.04 14.0 0.1 0.085 13.0 0.1 1.6 1 0 0 1 1 1 0 Pigment-dispersing hormone (PDH) HTH_10 PF04967.12 gi|449067220|ref|YP_007434302.1| - 0.083 12.7 0.1 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Nas2_N PF18265.1 gi|449067220|ref|YP_007434302.1| - 0.1 12.5 0.6 3.7 7.5 0.0 2.5 2 1 0 2 2 2 0 Nas2 N_terminal domain HDV_ag PF01517.18 gi|449067220|ref|YP_007434302.1| - 0.17 11.6 1.5 0.22 11.3 0.9 1.5 1 1 0 1 1 1 0 Hepatitis delta virus delta antigen Put_DNA-bind_N PF06971.13 gi|449067220|ref|YP_007434302.1| - 0.41 10.7 2.5 1 9.4 0.5 2.2 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus Peripla_BP_2 PF01497.18 gi|449067221|ref|YP_007434303.1| - 2e-19 70.1 0.4 3.2e-19 69.5 0.4 1.3 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|449067222|ref|YP_007434304.1| - 1.7e-66 224.3 39.1 2.2e-66 224.0 39.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|449067222|ref|YP_007434304.1| - 2.2e-06 27.3 26.7 3.7e-06 26.6 26.7 1.4 1 1 0 1 1 1 1 ABC 3 transport family DUF3180 PF11377.8 gi|449067222|ref|YP_007434304.1| - 9.9 6.3 11.7 14 5.8 0.0 4.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3180) ABC_tran PF00005.27 gi|449067223|ref|YP_007434305.1| - 1.4e-17 64.5 0.2 1.5e-16 61.2 0.2 2.1 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|449067223|ref|YP_007434305.1| - 3.2e-13 49.6 2.7 1.2e-06 28.2 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|449067223|ref|YP_007434305.1| - 2e-12 47.6 2.1 4e-05 23.6 0.6 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|449067223|ref|YP_007434305.1| - 2.9e-08 34.5 0.7 2.9e-08 34.5 0.7 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|449067223|ref|YP_007434305.1| - 3.4e-08 33.6 3.2 0.00015 21.6 0.2 2.2 1 1 1 2 2 2 2 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|449067223|ref|YP_007434305.1| - 1.7e-05 23.8 0.1 2.1e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Adenovirus IVa2 protein AAA_29 PF13555.6 gi|449067223|ref|YP_007434305.1| - 2.7e-05 23.8 0.0 5.5e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.19 gi|449067223|ref|YP_007434305.1| - 8.8e-05 22.2 1.3 0.00026 20.6 1.3 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|449067223|ref|YP_007434305.1| - 0.00037 20.5 0.9 0.0005 20.0 0.9 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|449067223|ref|YP_007434305.1| - 0.00098 19.4 0.0 0.0015 18.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|449067223|ref|YP_007434305.1| - 0.001 18.2 0.1 0.0017 17.5 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|449067223|ref|YP_007434305.1| - 0.0012 19.2 0.1 0.0036 17.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|449067223|ref|YP_007434305.1| - 0.0037 16.7 1.5 0.0053 16.2 0.5 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|449067223|ref|YP_007434305.1| - 0.0053 17.1 0.6 0.012 15.9 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|449067223|ref|YP_007434305.1| - 0.0059 16.6 1.7 0.05 13.6 1.7 2.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|449067223|ref|YP_007434305.1| - 0.0071 16.9 2.4 0.75 10.3 2.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|449067223|ref|YP_007434305.1| - 0.0071 16.1 0.1 0.012 15.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|449067223|ref|YP_007434305.1| - 0.008 16.1 0.2 0.017 15.0 0.2 1.5 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|449067223|ref|YP_007434305.1| - 0.01 15.8 0.6 0.021 14.8 0.2 1.7 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|449067223|ref|YP_007434305.1| - 0.013 14.3 0.4 0.021 13.6 0.1 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|449067223|ref|YP_007434305.1| - 0.018 15.0 0.7 0.081 12.8 0.1 2.0 1 1 0 2 2 2 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|449067223|ref|YP_007434305.1| - 0.019 15.2 0.0 0.044 13.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|449067223|ref|YP_007434305.1| - 0.019 15.4 0.1 0.036 14.5 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|449067223|ref|YP_007434305.1| - 0.022 14.7 2.9 0.47 10.4 0.2 2.3 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|449067223|ref|YP_007434305.1| - 0.032 13.9 0.2 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|449067223|ref|YP_007434305.1| - 0.037 13.6 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|449067223|ref|YP_007434305.1| - 0.07 13.4 0.1 0.53 10.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.20 gi|449067223|ref|YP_007434305.1| - 0.072 12.2 0.0 0.073 12.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF3584 PF12128.8 gi|449067223|ref|YP_007434305.1| - 0.076 10.5 0.3 0.1 10.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TrwB_AAD_bind PF10412.9 gi|449067223|ref|YP_007434305.1| - 0.096 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_11 PF13086.6 gi|449067223|ref|YP_007434305.1| - 0.1 12.4 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|449067223|ref|YP_007434305.1| - 0.13 12.4 0.3 0.24 11.5 0.3 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|449067223|ref|YP_007434305.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|449067223|ref|YP_007434305.1| - 0.14 12.5 0.5 0.39 11.1 0.1 2.0 2 1 0 2 2 2 0 RNA helicase MobB PF03205.14 gi|449067223|ref|YP_007434305.1| - 0.17 11.8 0.7 0.48 10.3 0.2 1.9 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|449067223|ref|YP_007434305.1| - 0.2 11.3 2.4 0.78 9.3 0.4 2.5 1 1 2 3 3 3 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|449067223|ref|YP_007434305.1| - 0.21 11.3 0.7 8.1 6.1 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein TrmB PF01978.19 gi|449067224|ref|YP_007434306.1| - 6.3e-11 42.0 1.1 1e-10 41.4 1.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449067224|ref|YP_007434306.1| - 1.1e-08 34.8 0.0 2e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|449067224|ref|YP_007434306.1| - 8e-08 31.9 0.2 7.6e-07 28.8 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|449067224|ref|YP_007434306.1| - 3.6e-07 30.0 0.1 7.1e-07 29.1 0.1 1.5 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|449067224|ref|YP_007434306.1| - 4.2e-07 29.8 2.8 5.3e-07 29.5 2.8 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.21 gi|449067224|ref|YP_007434306.1| - 1.3e-06 28.0 0.7 2.2e-06 27.2 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|449067224|ref|YP_007434306.1| - 1.9e-05 25.1 0.0 4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|449067224|ref|YP_007434306.1| - 2.1e-05 24.6 0.5 0.00018 21.6 0.5 2.3 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|449067224|ref|YP_007434306.1| - 3.9e-05 23.9 0.2 7.1e-05 23.1 0.2 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|449067224|ref|YP_007434306.1| - 4.2e-05 23.3 0.1 8.1e-05 22.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|449067224|ref|YP_007434306.1| - 4.5e-05 22.9 0.3 7.6e-05 22.2 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|449067224|ref|YP_007434306.1| - 0.00011 22.0 0.9 0.00027 20.8 0.3 1.9 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.6 gi|449067224|ref|YP_007434306.1| - 0.0002 21.5 0.3 0.00038 20.6 0.2 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|449067224|ref|YP_007434306.1| - 0.0007 20.2 0.3 0.001 19.7 0.3 1.5 1 1 0 1 1 1 1 Replication terminator protein HTH_Crp_2 PF13545.6 gi|449067224|ref|YP_007434306.1| - 0.001 19.0 0.1 0.0021 18.0 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Cullin_Nedd8 PF10557.9 gi|449067224|ref|YP_007434306.1| - 0.0013 18.7 2.6 0.029 14.4 0.1 2.9 3 0 0 3 3 3 1 Cullin protein neddylation domain UPF0122 PF04297.14 gi|449067224|ref|YP_007434306.1| - 0.0016 18.7 3.4 0.017 15.4 3.4 2.1 1 1 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HxlR PF01638.17 gi|449067224|ref|YP_007434306.1| - 0.0023 17.8 0.2 0.0038 17.0 0.2 1.5 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|449067224|ref|YP_007434306.1| - 0.0026 17.8 0.1 0.0057 16.7 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain FeoC PF09012.10 gi|449067224|ref|YP_007434306.1| - 0.0095 16.0 0.1 0.071 13.2 0.0 2.1 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_36 PF13730.6 gi|449067224|ref|YP_007434306.1| - 0.011 15.7 0.6 0.045 13.7 0.1 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|449067224|ref|YP_007434306.1| - 0.016 14.7 0.3 0.053 13.1 0.1 2.1 2 1 1 3 3 3 0 Sigma-70, region 4 HTH_41 PF14502.6 gi|449067224|ref|YP_007434306.1| - 0.022 14.5 0.7 0.08 12.6 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|449067224|ref|YP_007434306.1| - 0.023 14.4 1.1 0.035 13.8 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) PadR PF03551.14 gi|449067224|ref|YP_007434306.1| - 0.041 13.9 0.1 0.085 12.8 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Cdc6_C PF09079.11 gi|449067224|ref|YP_007434306.1| - 0.041 13.9 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain B-block_TFIIIC PF04182.12 gi|449067224|ref|YP_007434306.1| - 0.046 13.9 0.0 0.077 13.2 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HemN_C PF06969.16 gi|449067224|ref|YP_007434306.1| - 0.06 13.4 0.3 0.69 10.0 0.0 2.2 2 0 0 2 2 2 0 HemN C-terminal domain Penicillinase_R PF03965.16 gi|449067224|ref|YP_007434306.1| - 0.062 13.7 0.1 0.11 12.8 0.1 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_38 PF13936.6 gi|449067224|ref|YP_007434306.1| - 0.065 13.0 0.1 0.32 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Mga PF05043.13 gi|449067224|ref|YP_007434306.1| - 0.07 13.7 1.2 0.07 13.7 1.2 2.0 2 1 0 2 2 2 0 Mga helix-turn-helix domain Homeodomain PF00046.29 gi|449067224|ref|YP_007434306.1| - 0.072 12.9 0.6 0.83 9.6 0.1 2.3 2 0 0 2 2 2 0 Homeodomain MRP-L20 PF12824.7 gi|449067224|ref|YP_007434306.1| - 0.083 13.0 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 HTH_9 PF08221.11 gi|449067224|ref|YP_007434306.1| - 0.085 13.0 0.1 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF3920 PF13058.6 gi|449067224|ref|YP_007434306.1| - 0.089 13.0 0.9 0.16 12.2 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3920) LexA_DNA_bind PF01726.16 gi|449067224|ref|YP_007434306.1| - 0.092 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 LexA DNA binding domain TBPIP PF07106.13 gi|449067224|ref|YP_007434306.1| - 0.093 12.7 1.4 0.67 9.9 0.1 2.6 3 0 0 3 3 3 0 TBPIP/Hop2 winged helix domain HTH_47 PF16221.5 gi|449067224|ref|YP_007434306.1| - 0.099 12.2 0.0 0.18 11.4 0.0 1.5 1 1 0 1 1 1 0 winged helix-turn-helix TetR_N PF00440.23 gi|449067224|ref|YP_007434306.1| - 0.1 12.4 0.0 8.5 6.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family LSM PF01423.22 gi|449067225|ref|YP_007434307.1| - 5e-24 83.8 0.9 5.5e-24 83.6 0.9 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|449067225|ref|YP_007434307.1| - 0.00041 20.4 0.2 0.00048 20.2 0.2 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Fur_reg_FbpB PF13040.6 gi|449067225|ref|YP_007434307.1| - 0.15 11.6 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Fur-regulated basic protein B DUF469 PF04320.14 gi|449067227|ref|YP_007434309.1| - 0.061 14.2 0.2 0.45 11.4 0.1 2.0 2 0 0 2 2 2 0 Protein with unknown function (DUF469) FAD_binding_7 PF03441.14 gi|449067228|ref|YP_007434310.1| - 6.5e-66 221.7 2.1 1.1e-65 220.9 2.1 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|449067228|ref|YP_007434310.1| - 8.2e-27 94.2 0.0 8.2e-26 91.0 0.0 2.1 2 0 0 2 2 2 1 DNA photolyase AAA_22 PF13401.6 gi|449067229|ref|YP_007434311.1| - 0.0003 21.1 0.2 0.0011 19.3 0.0 2.0 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|449067229|ref|YP_007434311.1| - 0.0031 17.2 0.0 0.0068 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|449067229|ref|YP_007434311.1| - 0.0038 17.6 0.0 0.0092 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|449067229|ref|YP_007434311.1| - 0.0093 16.3 0.1 0.071 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|449067229|ref|YP_007434311.1| - 0.012 16.2 0.5 0.12 12.9 0.1 2.3 2 0 0 2 2 2 0 ABC transporter NTPase_1 PF03266.15 gi|449067229|ref|YP_007434311.1| - 0.012 15.5 0.7 0.034 14.1 0.1 2.0 2 0 0 2 2 2 0 NTPase MCM PF00493.23 gi|449067229|ref|YP_007434311.1| - 0.016 14.4 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 MCM P-loop domain NB-ARC PF00931.22 gi|449067229|ref|YP_007434311.1| - 0.022 13.9 0.0 0.051 12.7 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|449067229|ref|YP_007434311.1| - 0.041 13.8 0.1 0.18 11.7 0.0 2.0 2 0 0 2 2 2 0 NACHT domain DUF4222 PF13973.6 gi|449067229|ref|YP_007434311.1| - 0.057 13.0 0.1 0.15 11.7 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4222) AAA_7 PF12775.7 gi|449067229|ref|YP_007434311.1| - 0.064 12.8 0.3 0.2 11.1 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|449067229|ref|YP_007434311.1| - 0.11 12.5 0.1 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|449067229|ref|YP_007434311.1| - 0.12 12.9 0.2 0.54 10.7 0.0 2.2 2 1 1 3 3 3 0 AAA domain BORCS8 PF10167.9 gi|449067229|ref|YP_007434311.1| - 0.12 12.3 0.4 0.27 11.2 0.4 1.5 1 0 0 1 1 1 0 BLOC-1-related complex sub-unit 8 MRFAP1 PF15155.6 gi|449067229|ref|YP_007434311.1| - 0.15 12.6 0.2 19 5.8 0.0 2.5 1 1 1 2 2 2 0 MORF4 family-associated protein1 Img2 PF05046.14 gi|449067229|ref|YP_007434311.1| - 1.5 9.1 5.9 5.8 7.3 0.1 3.3 3 1 1 4 4 4 0 Mitochondrial large subunit ribosomal protein (Img2) MarR PF01047.22 gi|449067230|ref|YP_007434312.1| - 0.0079 16.1 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|449067230|ref|YP_007434312.1| - 0.03 14.7 0.0 0.048 14.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TehB PF03848.14 gi|449067230|ref|YP_007434312.1| - 0.037 13.4 0.2 0.074 12.5 0.2 1.5 1 1 0 1 1 1 0 Tellurite resistance protein TehB HTH_15 PF12324.8 gi|449067230|ref|YP_007434312.1| - 0.048 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase MarR_2 PF12802.7 gi|449067230|ref|YP_007434312.1| - 0.1 12.5 0.0 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 MarR family z-alpha PF02295.17 gi|449067230|ref|YP_007434312.1| - 0.16 12.0 0.9 0.37 10.9 0.1 1.9 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain TENA_THI-4 PF03070.16 gi|449067231|ref|YP_007434313.1| - 1.2e-38 133.1 1.0 1.3e-38 132.9 1.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family PTB PF08416.13 gi|449067231|ref|YP_007434313.1| - 0.015 15.5 0.1 0.91 9.7 0.0 2.1 2 0 0 2 2 2 0 Phosphotyrosine-binding domain GT87 PF09594.10 gi|449067232|ref|YP_007434314.1| - 0.0021 17.8 6.6 0.0021 17.8 6.6 3.3 3 0 0 3 3 3 1 Glycosyltransferase family 87 adh_short_C2 PF13561.6 gi|449067233|ref|YP_007434315.1| - 1.8e-62 210.9 0.7 2.1e-62 210.8 0.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449067233|ref|YP_007434315.1| - 2.3e-54 183.8 1.0 2.9e-54 183.5 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449067233|ref|YP_007434315.1| - 2.3e-10 40.7 0.2 3.7e-10 40.0 0.2 1.4 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|449067233|ref|YP_007434315.1| - 0.036 13.2 0.1 0.051 12.7 0.1 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein 3HCDH_N PF02737.18 gi|449067233|ref|YP_007434315.1| - 0.049 13.5 0.2 0.075 12.9 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltr_RsmB-F PF01189.17 gi|449067233|ref|YP_007434315.1| - 0.065 12.9 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Epimerase PF01370.21 gi|449067233|ref|YP_007434315.1| - 0.11 12.0 0.4 0.55 9.6 0.4 2.1 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF488 PF04343.13 gi|449067234|ref|YP_007434316.1| - 1.5e-33 116.0 0.0 1.8e-33 115.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Daxx PF03344.15 gi|449067234|ref|YP_007434316.1| - 0.065 13.3 0.1 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 Daxx N-terminal Rassf1C-interacting domain PELOTA_1 PF15608.6 gi|449067234|ref|YP_007434316.1| - 0.091 12.7 0.0 0.23 11.4 0.0 1.7 1 1 0 1 1 1 0 PELOTA RNA binding domain Cupin_2 PF07883.11 gi|449067235|ref|YP_007434317.1| - 2.5e-19 68.7 0.2 4.2e-19 68.0 0.2 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|449067235|ref|YP_007434317.1| - 3.1e-08 33.7 0.1 3.5e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|449067235|ref|YP_007434317.1| - 1.3e-07 31.4 0.1 3.8e-07 29.9 0.1 1.7 1 1 0 1 1 1 1 Auxin binding protein AraC_binding PF02311.19 gi|449067235|ref|YP_007434317.1| - 1.2e-06 28.4 0.0 1.5e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain DMSP_lyase PF16867.5 gi|449067235|ref|YP_007434317.1| - 2.4e-05 24.0 0.0 3.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|449067235|ref|YP_007434317.1| - 0.0011 18.6 0.1 0.0046 16.6 0.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|449067235|ref|YP_007434317.1| - 0.0024 18.0 0.0 0.0032 17.6 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_1 PF00190.22 gi|449067235|ref|YP_007434317.1| - 0.0073 15.9 0.0 0.012 15.2 0.0 1.4 1 1 0 1 1 1 1 Cupin JmjC PF02373.22 gi|449067235|ref|YP_007434317.1| - 0.024 15.0 0.1 0.042 14.3 0.1 1.4 1 1 0 1 1 1 0 JmjC domain, hydroxylase Cupin_7 PF12973.7 gi|449067235|ref|YP_007434317.1| - 0.039 13.9 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 ChrR Cupin-like domain EutQ PF06249.12 gi|449067235|ref|YP_007434317.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.6 1 1 1 2 2 2 0 Ethanolamine utilisation protein EutQ VAPB_antitox PF02697.14 gi|449067236|ref|YP_007434318.1| - 0.0097 16.7 6.8 0.043 14.6 6.8 2.0 1 1 0 1 1 1 1 Putative antitoxin Tail_P2_I PF09684.10 gi|449067236|ref|YP_007434318.1| - 0.016 15.1 0.0 0.03 14.2 0.0 1.4 1 1 0 1 1 1 0 Phage tail protein (Tail_P2_I) Fib_alpha PF08702.10 gi|449067236|ref|YP_007434318.1| - 0.031 14.5 0.4 0.034 14.3 0.4 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family SAPIS-gp6 PF16722.5 gi|449067236|ref|YP_007434318.1| - 0.04 14.3 1.8 0.042 14.3 0.3 1.8 1 1 1 2 2 2 0 Pathogenicity island protein gp6 in Staphylococcus LAGLIDADG_3 PF14528.6 gi|449067236|ref|YP_007434318.1| - 0.083 13.2 0.1 0.11 12.8 0.1 1.4 1 1 0 1 1 1 0 LAGLIDADG-like domain PIN PF01850.21 gi|449067237|ref|YP_007434319.1| - 2e-12 47.7 0.1 2.5e-12 47.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|449067237|ref|YP_007434319.1| - 3.5e-05 24.5 0.0 4.3e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 PIN domain Fur_reg_FbpA PF13076.6 gi|449067237|ref|YP_007434319.1| - 0.24 11.1 1.6 20 5.0 0.1 2.7 2 0 0 2 2 2 0 Fur-regulated basic protein A Chaperone_III PF07824.12 gi|449067239|ref|YP_007434321.1| - 0.21 11.8 0.0 0.25 11.6 0.0 1.1 1 0 0 1 1 1 0 Type III secretion chaperone domain UPF0126 PF03458.13 gi|449067240|ref|YP_007434322.1| - 1.4e-44 149.9 15.9 2.1e-23 82.0 5.8 2.2 2 0 0 2 2 2 2 UPF0126 domain NnrS PF05940.12 gi|449067240|ref|YP_007434322.1| - 0.037 13.4 5.3 0.055 12.8 5.3 1.3 1 0 0 1 1 1 0 NnrS protein TPR_2 PF07719.17 gi|449067241|ref|YP_007434323.1| - 7e-23 78.9 20.5 1.3e-05 24.9 0.2 8.0 7 1 1 8 8 8 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|449067241|ref|YP_007434323.1| - 1.5e-20 71.6 16.9 5.5e-06 26.2 0.4 5.7 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|449067241|ref|YP_007434323.1| - 3.3e-20 71.0 24.9 1.1e-06 28.1 0.3 7.3 8 1 0 8 8 8 4 Tetratricopeptide repeat TPR_16 PF13432.6 gi|449067241|ref|YP_007434323.1| - 1.3e-17 64.1 0.8 0.00012 22.7 0.0 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|449067241|ref|YP_007434323.1| - 1.1e-16 60.0 5.1 0.00012 22.2 0.2 5.6 4 2 1 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|449067241|ref|YP_007434323.1| - 7.1e-16 57.6 22.6 1.8e-10 40.3 0.7 6.4 4 2 2 6 6 6 4 TPR repeat TPR_19 PF14559.6 gi|449067241|ref|YP_007434323.1| - 9.3e-13 48.5 11.2 8.3e-05 23.0 0.2 5.1 4 1 2 6 6 5 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|449067241|ref|YP_007434323.1| - 6.5e-10 38.3 2.5 0.099 12.7 0.2 5.5 4 1 1 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|449067241|ref|YP_007434323.1| - 6.5e-10 39.0 0.1 0.079 13.1 0.0 5.8 3 3 2 6 6 6 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|449067241|ref|YP_007434323.1| - 1.3e-09 38.2 9.0 0.038 14.3 0.0 5.6 4 3 2 6 6 6 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|449067241|ref|YP_007434323.1| - 2.9e-08 33.9 4.6 1.3 10.1 0.3 5.8 4 2 2 6 6 6 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|449067241|ref|YP_007434323.1| - 3.5e-07 29.5 5.8 0.0072 15.3 0.3 3.4 1 1 1 3 3 3 3 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|449067241|ref|YP_007434323.1| - 3.6e-07 30.3 5.1 0.36 11.1 1.3 3.5 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_21 PF09976.9 gi|449067241|ref|YP_007434323.1| - 7.4e-06 25.8 1.0 0.24 11.1 0.0 3.5 2 1 1 3 3 3 3 Tetratricopeptide repeat-like domain FAT PF02259.23 gi|449067241|ref|YP_007434323.1| - 1.1e-05 24.9 0.6 0.0042 16.4 0.6 2.8 1 1 0 1 1 1 1 FAT domain TPR_10 PF13374.6 gi|449067241|ref|YP_007434323.1| - 5.5e-05 22.9 9.0 0.33 10.9 0.1 5.0 4 1 1 5 5 5 2 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|449067241|ref|YP_007434323.1| - 0.00027 20.4 0.5 0.00027 20.4 0.5 1.9 2 1 0 2 2 2 1 Coatomer epsilon subunit TPR_6 PF13174.6 gi|449067241|ref|YP_007434323.1| - 0.0004 20.8 15.3 4.2 8.2 0.2 6.3 7 1 1 8 8 6 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|449067241|ref|YP_007434323.1| - 0.00059 19.8 2.4 0.00059 19.8 2.4 2.7 1 1 1 2 2 2 1 Putative TPR-like repeat Wzy_C_2 PF11846.8 gi|449067241|ref|YP_007434323.1| - 0.0013 18.7 0.1 0.77 9.6 0.0 2.2 2 0 0 2 2 2 2 Virulence factor membrane-bound polymerase, C-terminal TPR_MalT PF17874.1 gi|449067241|ref|YP_007434323.1| - 0.0015 18.0 0.1 4.1 6.7 0.0 3.5 3 1 1 4 4 4 2 MalT-like TPR region MIT PF04212.18 gi|449067241|ref|YP_007434323.1| - 0.015 15.3 8.8 0.11 12.6 2.0 4.1 2 2 0 2 2 2 0 MIT (microtubule interacting and transport) domain TPR_20 PF14561.6 gi|449067241|ref|YP_007434323.1| - 0.016 15.5 1.7 7.1 7.0 0.2 4.1 3 1 2 5 5 5 0 Tetratricopeptide repeat DUF3856 PF12968.7 gi|449067241|ref|YP_007434323.1| - 0.018 15.1 2.8 27 4.8 0.0 3.8 1 1 3 4 4 4 0 Domain of Unknown Function (DUF3856) DUF4810 PF16068.5 gi|449067241|ref|YP_007434323.1| - 0.022 15.3 1.9 1.2 9.8 0.0 3.8 2 2 3 5 5 5 0 Domain of unknown function (DUF4810) Clathrin PF00637.20 gi|449067241|ref|YP_007434323.1| - 0.022 14.6 8.9 0.02 14.8 4.3 2.5 2 1 0 2 2 2 0 Region in Clathrin and VPS HrpB1_HrpK PF09613.10 gi|449067241|ref|YP_007434323.1| - 0.024 14.3 0.0 8.2 6.1 0.0 3.5 2 2 2 4 4 4 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF928 PF06051.12 gi|449067241|ref|YP_007434323.1| - 0.11 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF928) PTS_IIA PF02255.16 gi|449067241|ref|YP_007434323.1| - 0.41 10.7 2.2 28 4.8 0.1 3.2 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit HTH_Bact PF18768.1 gi|449067241|ref|YP_007434323.1| - 3.8 7.2 8.1 11 5.7 0.1 4.2 4 1 0 4 4 3 0 Helix-turn-helix bacterial domain NAD_binding_8 PF13450.6 gi|449067242|ref|YP_007434324.1| - 3.2e-09 36.9 0.3 7.8e-09 35.6 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|449067242|ref|YP_007434324.1| - 4.3e-09 36.2 0.0 5.7e-05 22.6 0.0 2.6 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase DAO PF01266.24 gi|449067242|ref|YP_007434324.1| - 1.1e-08 35.1 0.2 9.1e-08 32.1 0.2 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|449067242|ref|YP_007434324.1| - 6.9e-08 32.9 4.4 0.0013 19.2 0.4 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|449067242|ref|YP_007434324.1| - 2.5e-07 30.2 4.4 9e-05 21.8 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.18 gi|449067242|ref|YP_007434324.1| - 1.2e-06 27.4 1.0 0.0011 17.5 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor HI0933_like PF03486.14 gi|449067242|ref|YP_007434324.1| - 2.1e-06 26.7 1.6 0.0022 16.8 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|449067242|ref|YP_007434324.1| - 2.9e-05 23.3 1.7 0.025 13.7 0.7 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|449067242|ref|YP_007434324.1| - 0.00026 20.5 3.5 0.0015 18.0 0.5 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|449067242|ref|YP_007434324.1| - 0.00031 20.1 0.8 0.00048 19.5 0.8 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|449067242|ref|YP_007434324.1| - 0.002 17.4 3.4 0.043 13.1 0.3 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|449067242|ref|YP_007434324.1| - 0.0024 17.0 1.8 0.11 11.6 0.4 2.4 2 0 0 2 2 2 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|449067242|ref|YP_007434324.1| - 0.021 14.4 0.1 0.038 13.5 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|449067242|ref|YP_007434324.1| - 0.07 13.6 0.2 0.24 11.8 0.0 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|449067242|ref|YP_007434324.1| - 0.1 11.4 5.1 0.12 11.2 0.3 2.2 2 0 0 2 2 2 0 Tryptophan halogenase CUE PF02845.16 gi|449067242|ref|YP_007434324.1| - 0.13 12.0 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 CUE domain 3HCDH_N PF02737.18 gi|449067242|ref|YP_007434324.1| - 0.13 12.1 2.9 5.9 6.7 0.3 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|449067242|ref|YP_007434324.1| - 0.28 10.2 1.2 0.27 10.2 0.3 1.4 2 0 0 2 2 2 0 Lycopene cyclase protein 4HBT PF03061.22 gi|449067243|ref|YP_007434325.1| - 2.4e-15 56.7 0.1 3.3e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|449067243|ref|YP_007434325.1| - 0.025 14.8 0.0 0.029 14.6 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF4442 PF14539.6 gi|449067243|ref|YP_007434325.1| - 0.072 13.2 0.0 0.092 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) TrmB PF01978.19 gi|449067244|ref|YP_007434326.1| - 6.1e-11 42.0 0.1 8.1e-11 41.7 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|449067244|ref|YP_007434326.1| - 1.9e-07 30.9 0.9 2.8e-07 30.3 0.9 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|449067244|ref|YP_007434326.1| - 4.7e-07 29.7 0.3 7.9e-07 28.9 0.3 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|449067244|ref|YP_007434326.1| - 5.3e-07 30.0 0.1 7.7e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|449067244|ref|YP_007434326.1| - 7.3e-06 25.8 0.8 8.8e-06 25.5 0.8 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|449067244|ref|YP_007434326.1| - 2.3e-05 24.1 0.1 3.4e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family SMC_ScpB PF04079.16 gi|449067244|ref|YP_007434326.1| - 2.8e-05 23.8 0.1 3.5e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB MarR_2 PF12802.7 gi|449067244|ref|YP_007434326.1| - 5.2e-05 23.0 0.0 6.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|449067244|ref|YP_007434326.1| - 6.6e-05 22.8 0.0 9.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|449067244|ref|YP_007434326.1| - 0.0001 22.5 0.3 0.00018 21.6 0.2 1.4 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|449067244|ref|YP_007434326.1| - 0.0001 21.9 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|449067244|ref|YP_007434326.1| - 0.00054 19.7 0.1 0.00058 19.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|449067244|ref|YP_007434326.1| - 0.00068 19.1 0.2 0.0013 18.3 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|449067244|ref|YP_007434326.1| - 0.0007 19.5 0.1 0.0011 18.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Phage_rep_O PF04492.13 gi|449067244|ref|YP_007434326.1| - 0.00078 20.0 0.1 0.0016 19.0 0.1 1.5 1 0 0 1 1 1 1 Bacteriophage replication protein O HTH_DeoR PF08220.12 gi|449067244|ref|YP_007434326.1| - 0.00094 18.9 0.2 0.0016 18.1 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|449067244|ref|YP_007434326.1| - 0.0052 17.1 0.0 0.0077 16.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Tfb2 PF03849.14 gi|449067244|ref|YP_007434326.1| - 0.0054 15.8 0.0 0.006 15.6 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Tfb2 HrcA_DNA-bdg PF03444.15 gi|449067244|ref|YP_007434326.1| - 0.011 15.3 0.2 0.018 14.6 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 gi|449067244|ref|YP_007434326.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|449067244|ref|YP_007434326.1| - 0.015 15.4 0.1 0.02 15.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DDRGK PF09756.9 gi|449067244|ref|YP_007434326.1| - 0.027 14.1 0.1 0.039 13.5 0.1 1.2 1 0 0 1 1 1 0 DDRGK domain RuvB_C PF05491.13 gi|449067244|ref|YP_007434326.1| - 0.029 14.2 0.5 0.05 13.5 0.5 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain RP-C PF03428.13 gi|449067244|ref|YP_007434326.1| - 0.032 13.9 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|449067244|ref|YP_007434326.1| - 0.045 13.7 0.1 0.064 13.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|449067244|ref|YP_007434326.1| - 0.047 13.8 0.1 0.082 13.1 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|449067244|ref|YP_007434326.1| - 0.054 13.7 0.1 0.073 13.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|449067244|ref|YP_007434326.1| - 0.062 13.7 0.4 0.084 13.2 0.4 1.4 1 1 0 1 1 1 0 Penicillinase repressor HTH_10 PF04967.12 gi|449067244|ref|YP_007434326.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain FeoC PF09012.10 gi|449067244|ref|YP_007434326.1| - 0.067 13.3 0.1 0.1 12.7 0.1 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator L27 PF02828.16 gi|449067245|ref|YP_007434327.1| - 0.038 13.7 0.8 1.6 8.5 0.1 2.5 2 0 0 2 2 2 0 L27 domain Fis1_TPR_C PF14853.6 gi|449067245|ref|YP_007434327.1| - 0.11 12.6 0.8 0.47 10.6 0.3 2.4 2 2 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat AAA_23 PF13476.6 gi|449067245|ref|YP_007434327.1| - 0.13 12.7 3.3 0.23 12.0 3.3 1.4 1 1 0 1 1 1 0 AAA domain NAD_synthase PF02540.17 gi|449067245|ref|YP_007434327.1| - 0.63 9.1 4.0 0.18 10.9 0.6 1.7 2 0 0 2 2 2 0 NAD synthase GHMP_kinases_N PF00288.26 gi|449067246|ref|YP_007434328.1| - 4.9e-15 55.5 0.1 1.4e-14 54.0 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|449067246|ref|YP_007434328.1| - 0.0005 20.4 0.1 0.0016 18.8 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal PCRF PF03462.18 gi|449067246|ref|YP_007434328.1| - 0.079 12.8 0.5 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 PCRF domain MDD_C PF18376.1 gi|449067247|ref|YP_007434329.1| - 2.9e-33 115.2 0.1 1.6e-31 109.5 0.0 2.2 1 1 1 2 2 2 2 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|449067247|ref|YP_007434329.1| - 8.3e-08 32.4 1.4 1.8e-07 31.3 1.4 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain MethyltransfD12 PF02086.15 gi|449067247|ref|YP_007434329.1| - 0.051 13.2 0.2 0.2 11.3 0.1 1.9 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase HD PF01966.22 gi|449067248|ref|YP_007434330.1| - 1.9e-14 54.0 0.1 4.8e-14 52.6 0.0 1.8 2 0 0 2 2 2 1 HD domain HDOD PF08668.12 gi|449067248|ref|YP_007434330.1| - 0.0023 17.4 0.0 0.0042 16.6 0.0 1.5 1 0 0 1 1 1 1 HDOD domain PDEase_I PF00233.19 gi|449067248|ref|YP_007434330.1| - 0.074 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase PNP_UDP_1 PF01048.20 gi|449067249|ref|YP_007434331.1| - 9.4e-38 129.8 0.0 1.2e-37 129.4 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Glycos_transf_1 PF00534.20 gi|449067251|ref|YP_007434333.1| - 2.6e-37 128.0 0.2 4.9e-37 127.1 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067251|ref|YP_007434333.1| - 4.8e-24 85.3 0.1 7.6e-24 84.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|449067251|ref|YP_007434333.1| - 1.3e-05 25.5 0.0 2.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|449067251|ref|YP_007434333.1| - 6.8e-05 21.7 0.8 0.014 14.1 0.1 2.2 1 1 1 2 2 2 2 Glycosyltransferase family 20 RRM_2 PF04059.12 gi|449067251|ref|YP_007434333.1| - 0.0082 16.3 0.2 0.14 12.3 0.1 2.7 3 0 0 3 3 3 1 RNA recognition motif 2 Glyco_hydro_15 PF00723.21 gi|449067252|ref|YP_007434334.1| - 9.2e-45 153.2 0.0 6.9e-44 150.4 0.1 1.9 1 1 1 2 2 2 1 Glycosyl hydrolases family 15 Glyco_hydro_125 PF06824.11 gi|449067252|ref|YP_007434334.1| - 0.0041 16.1 0.1 0.054 12.4 0.0 2.5 1 1 1 2 2 2 1 Metal-independent alpha-mannosidase (GH125) TPR_19 PF14559.6 gi|449067252|ref|YP_007434334.1| - 0.018 15.5 0.0 0.15 12.5 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Serpin PF00079.20 gi|449067252|ref|YP_007434334.1| - 0.19 11.0 0.0 0.34 10.2 0.0 1.4 1 0 0 1 1 1 0 Serpin (serine protease inhibitor) GWT1 PF06423.12 gi|449067253|ref|YP_007434335.1| - 9.8 6.3 8.8 2.5 8.2 4.3 1.9 1 1 1 2 2 2 0 GWT1 Macro PF01661.21 gi|449067254|ref|YP_007434336.1| - 3.6e-36 123.8 0.0 4.5e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 Macro domain Lactamase_B PF00753.27 gi|449067255|ref|YP_007434337.1| - 7.3e-07 29.4 1.5 2.2e-06 27.8 1.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|449067255|ref|YP_007434337.1| - 0.01 15.4 0.1 0.022 14.3 0.1 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain FMN_red PF03358.15 gi|449067257|ref|YP_007434339.1| - 7e-39 133.0 0.0 9.5e-39 132.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|449067257|ref|YP_007434339.1| - 1.7e-07 31.1 0.0 2.3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF1987 PF09345.10 gi|449067257|ref|YP_007434339.1| - 0.006 16.2 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1987) MFS_1 PF07690.16 gi|449067258|ref|YP_007434340.1| - 1.9e-35 122.4 51.5 1.1e-20 73.9 29.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily 4HBT PF03061.22 gi|449067259|ref|YP_007434341.1| - 2.6e-06 27.7 0.0 3.9e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|449067259|ref|YP_007434341.1| - 1.7e-05 25.3 0.0 2e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|449067259|ref|YP_007434341.1| - 0.065 12.5 0.1 0.081 12.2 0.1 1.2 1 0 0 1 1 1 0 Acyl-ACP thioesterase NTP_transferase PF00483.23 gi|449067261|ref|YP_007434343.1| - 3.1e-33 115.4 0.0 3.6e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|449067261|ref|YP_007434343.1| - 1.4e-09 38.5 0.0 1.9e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|449067261|ref|YP_007434343.1| - 0.0025 17.6 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DNA_binding_1 PF01035.20 gi|449067262|ref|YP_007434344.1| - 7e-25 87.0 0.0 8.8e-25 86.6 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.12 gi|449067262|ref|YP_007434344.1| - 0.0061 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Methyltransf_1N PF02870.15 gi|449067262|ref|YP_007434344.1| - 0.033 15.0 0.0 0.12 13.2 0.0 2.0 1 1 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain tRNA-synt_2b PF00587.25 gi|449067263|ref|YP_007434345.1| - 1.6e-41 142.3 0.0 4.3e-41 140.8 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|449067263|ref|YP_007434345.1| - 9.3e-18 64.2 2.7 1.1e-17 63.9 1.3 1.9 2 0 0 2 2 2 1 Anticodon binding domain Glyco_tran_28_C PF04101.16 gi|449067264|ref|YP_007434346.1| - 1.8e-10 41.0 0.0 3.4e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Ntox50 PF15542.6 gi|449067264|ref|YP_007434346.1| - 0.023 15.5 0.6 0.098 13.5 0.1 2.2 2 0 0 2 2 2 0 Bacterial toxin 50 HhH-GPD PF00730.25 gi|449067265|ref|YP_007434347.1| - 1e-11 45.2 0.0 1.4e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF4332 PF14229.6 gi|449067265|ref|YP_007434347.1| - 2.5e-05 24.5 0.2 0.00013 22.2 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH_5 PF14520.6 gi|449067265|ref|YP_007434347.1| - 0.0023 18.5 1.7 0.87 10.2 0.4 2.8 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|449067265|ref|YP_007434347.1| - 0.0049 16.7 0.3 0.021 14.7 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|449067265|ref|YP_007434347.1| - 0.14 12.5 1.1 0.24 11.8 1.1 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III ATP-grasp_2 PF08442.10 gi|449067266|ref|YP_007434348.1| - 6.3e-28 97.7 3.7 5.9e-27 94.6 1.0 3.1 2 2 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|449067266|ref|YP_007434348.1| - 1.3e-15 57.6 0.3 2.4e-15 56.6 0.3 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|449067266|ref|YP_007434348.1| - 1.7e-06 27.7 0.0 0.034 13.6 0.1 3.6 2 1 0 3 3 3 2 ATP-grasp domain NAD_binding_10 PF13460.6 gi|449067266|ref|YP_007434348.1| - 0.03 14.2 0.1 0.7 9.8 0.0 2.2 2 0 0 2 2 2 0 NAD(P)H-binding CoA_binding PF02629.19 gi|449067267|ref|YP_007434349.1| - 1e-23 83.8 2.1 1e-23 83.8 2.1 2.4 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|449067267|ref|YP_007434349.1| - 1.3e-12 47.8 1.3 2.3e-12 47.0 1.3 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|449067267|ref|YP_007434349.1| - 3.8e-08 33.2 0.1 6.6e-08 32.5 0.0 1.5 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|449067267|ref|YP_007434349.1| - 1.3e-07 32.1 0.0 3e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|449067267|ref|YP_007434349.1| - 0.022 15.6 0.1 0.061 14.2 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold PDZ_6 PF17820.1 gi|449067267|ref|YP_007434349.1| - 0.023 14.5 0.1 0.7 9.8 0.0 2.4 2 0 0 2 2 2 0 PDZ domain DUF4369 PF14289.6 gi|449067268|ref|YP_007434350.1| - 0.83 10.2 6.4 0.84 10.2 0.9 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4369) Pro_CA PF00484.19 gi|449067269|ref|YP_007434351.1| - 0.00017 21.9 0.0 0.00031 21.1 0.0 1.5 1 0 0 1 1 1 1 Carbonic anhydrase DUF2104 PF09877.9 gi|449067270|ref|YP_007434352.1| - 8 6.8 13.0 2.7 8.3 0.4 3.4 2 2 1 3 3 3 0 Predicted membrane protein (DUF2104) DUF5392 PF17370.2 gi|449067271|ref|YP_007434353.1| - 0.16 12.0 1.8 3.5 7.7 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5392) SSDP PF04503.13 gi|449067272|ref|YP_007434354.1| - 2.5 8.3 4.7 1.4 9.2 1.7 1.8 2 0 0 2 2 2 0 Single-stranded DNA binding protein, SSDP STT3 PF02516.14 gi|449067273|ref|YP_007434355.1| - 2e-17 63.3 40.2 2e-17 63.3 40.2 1.8 3 0 0 3 3 3 1 Oligosaccharyl transferase STT3 subunit Nop10p PF04135.12 gi|449067274|ref|YP_007434356.1| - 5.7e-23 80.7 2.6 6.2e-23 80.6 2.6 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Elf1 PF05129.13 gi|449067274|ref|YP_007434356.1| - 0.018 15.0 0.0 0.026 14.6 0.0 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like RecR PF02132.15 gi|449067274|ref|YP_007434356.1| - 0.037 13.6 0.4 0.054 13.1 0.4 1.3 1 0 0 1 1 1 0 RecR protein Secapin PF17521.2 gi|449067274|ref|YP_007434356.1| - 0.53 10.1 3.5 0.45 10.3 1.3 1.9 1 1 1 2 2 2 0 Honey bee peptides EIF_2_alpha PF07541.12 gi|449067275|ref|YP_007434357.1| - 1.9e-21 76.3 0.2 1.9e-21 76.3 0.2 2.1 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|449067275|ref|YP_007434357.1| - 4.4e-11 43.0 0.1 4.4e-11 43.0 0.1 2.4 2 0 0 2 2 2 1 S1 RNA binding domain N6_N4_Mtase PF01555.18 gi|449067275|ref|YP_007434357.1| - 0.031 14.0 2.0 0.042 13.6 2.0 1.2 1 0 0 1 1 1 0 DNA methylase DUF848 PF05852.11 gi|449067275|ref|YP_007434357.1| - 0.59 10.2 6.9 0.32 11.1 0.1 2.3 1 1 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Ribosomal_S27e PF01667.17 gi|449067276|ref|YP_007434358.1| - 2.3e-19 68.8 1.7 2.6e-19 68.7 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 DNA_RNApol_7kD PF03604.13 gi|449067276|ref|YP_007434358.1| - 0.0051 16.5 2.1 0.014 15.0 2.1 1.8 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|449067276|ref|YP_007434358.1| - 0.01 15.9 0.1 0.011 15.8 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF951 PF06107.11 gi|449067276|ref|YP_007434358.1| - 0.011 15.6 1.7 0.33 10.9 0.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF3797 PF12677.7 gi|449067276|ref|YP_007434358.1| - 0.015 15.2 1.8 2.9 7.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.12 gi|449067276|ref|YP_007434358.1| - 0.047 13.2 0.4 0.064 12.8 0.4 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding RNA_pol_N PF01194.17 gi|449067276|ref|YP_007434358.1| - 0.25 11.7 0.7 0.25 11.7 0.7 1.8 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit Ribosomal_L44 PF00935.19 gi|449067277|ref|YP_007434359.1| - 6.5e-28 97.0 9.2 6.5e-28 97.0 9.2 1.5 1 1 1 2 2 2 1 Ribosomal protein L44 RNA_POL_M_15KD PF02150.16 gi|449067277|ref|YP_007434359.1| - 0.075 12.9 0.8 3.6 7.5 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L33 PF00471.20 gi|449067277|ref|YP_007434359.1| - 0.076 13.5 1.6 0.076 13.5 1.6 2.9 2 1 1 3 3 3 0 Ribosomal protein L33 Cys_rich_KTR PF14205.6 gi|449067277|ref|YP_007434359.1| - 0.17 11.7 4.9 0.63 9.9 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR zinc_ribbon_4 PF13717.6 gi|449067277|ref|YP_007434359.1| - 0.19 11.7 4.6 3.4 7.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain CxC5 PF18718.1 gi|449067277|ref|YP_007434359.1| - 0.33 11.1 6.8 0.44 10.6 1.0 2.1 1 1 0 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases 3-HAO PF06052.12 gi|449067278|ref|YP_007434360.1| - 0.057 13.1 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase DNA_primase_S PF01896.19 gi|449067279|ref|YP_007434361.1| - 2.2e-10 40.9 0.7 1.1e-05 25.5 0.9 2.6 2 1 0 2 2 2 2 DNA primase small subunit PCNA_N PF00705.18 gi|449067280|ref|YP_007434362.1| - 5.9e-10 38.9 0.1 1.2e-09 37.9 0.1 1.5 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|449067280|ref|YP_007434362.1| - 0.001 19.2 0.0 0.021 15.0 0.0 2.8 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|449067280|ref|YP_007434362.1| - 0.0042 16.6 0.0 0.0047 16.4 0.0 1.2 1 0 0 1 1 1 1 Rad9 ATP_bind_1 PF03029.17 gi|449067281|ref|YP_007434363.1| - 2e-57 194.8 0.1 2.3e-57 194.6 0.1 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|449067281|ref|YP_007434363.1| - 2.3e-06 27.5 0.0 0.0075 16.1 0.0 3.1 3 0 0 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_18 PF13238.6 gi|449067281|ref|YP_007434363.1| - 0.00014 22.4 0.0 0.00022 21.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|449067281|ref|YP_007434363.1| - 0.00033 20.4 0.0 0.016 14.9 0.0 2.7 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation DUF87 PF01935.17 gi|449067281|ref|YP_007434363.1| - 0.00052 20.2 0.0 0.0014 18.8 0.0 1.6 1 1 0 1 1 1 1 Helicase HerA, central domain SRP54 PF00448.22 gi|449067281|ref|YP_007434363.1| - 0.0013 18.4 0.0 0.024 14.3 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain cobW PF02492.19 gi|449067281|ref|YP_007434363.1| - 0.0014 18.2 0.0 0.1 12.2 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|449067281|ref|YP_007434363.1| - 0.0014 18.9 0.0 0.0073 16.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|449067281|ref|YP_007434363.1| - 0.0015 18.9 0.1 0.32 11.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|449067281|ref|YP_007434363.1| - 0.0019 17.9 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|449067281|ref|YP_007434363.1| - 0.0021 18.0 0.0 0.85 9.5 0.0 3.2 3 1 0 3 3 3 1 RsgA GTPase AAA_16 PF13191.6 gi|449067281|ref|YP_007434363.1| - 0.0023 18.3 0.0 0.0043 17.5 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|449067281|ref|YP_007434363.1| - 0.005 16.8 0.1 0.51 10.2 0.0 2.4 2 0 0 2 2 2 1 NTPase NACHT PF05729.12 gi|449067281|ref|YP_007434363.1| - 0.0056 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|449067281|ref|YP_007434363.1| - 0.0061 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain MMR_HSR1 PF01926.23 gi|449067281|ref|YP_007434363.1| - 0.0062 16.6 0.1 0.06 13.4 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase CbiA PF01656.23 gi|449067281|ref|YP_007434363.1| - 0.0062 16.6 0.0 0.0078 16.3 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain T2SSE PF00437.20 gi|449067281|ref|YP_007434363.1| - 0.0064 15.6 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|449067281|ref|YP_007434363.1| - 0.007 16.1 0.0 0.05 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain Septin PF00735.18 gi|449067281|ref|YP_007434363.1| - 0.0094 15.3 0.0 0.24 10.6 0.0 2.4 2 1 0 2 2 2 1 Septin PhoH PF02562.16 gi|449067281|ref|YP_007434363.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|449067281|ref|YP_007434363.1| - 0.012 15.3 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|449067281|ref|YP_007434363.1| - 0.014 15.4 0.1 1.7 8.7 0.0 2.3 2 0 0 2 2 2 0 Dynamin family AAA_28 PF13521.6 gi|449067281|ref|YP_007434363.1| - 0.015 15.5 0.0 0.023 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|449067281|ref|YP_007434363.1| - 0.017 14.3 0.0 0.024 13.8 0.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase ABC_tran PF00005.27 gi|449067281|ref|YP_007434363.1| - 0.017 15.6 0.0 0.027 15.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter KTI12 PF08433.10 gi|449067281|ref|YP_007434363.1| - 0.02 14.3 0.0 0.093 12.2 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 FeoB_N PF02421.18 gi|449067281|ref|YP_007434363.1| - 0.021 14.4 0.0 0.73 9.3 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B MeaB PF03308.16 gi|449067281|ref|YP_007434363.1| - 0.027 13.5 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB G-alpha PF00503.20 gi|449067281|ref|YP_007434363.1| - 0.033 13.3 0.0 0.074 12.2 0.0 1.5 1 0 0 1 1 1 0 G-protein alpha subunit Viral_helicase1 PF01443.18 gi|449067281|ref|YP_007434363.1| - 0.034 13.9 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|449067281|ref|YP_007434363.1| - 0.04 13.1 0.0 0.065 12.5 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain MMR_HSR1_Xtn PF16897.5 gi|449067281|ref|YP_007434363.1| - 0.044 13.8 0.1 9.4 6.3 0.0 2.9 2 1 1 3 3 3 0 C-terminal region of MMR_HSR1 domain AAA_14 PF13173.6 gi|449067281|ref|YP_007434363.1| - 0.049 13.7 0.2 0.19 11.8 0.0 2.2 1 1 1 2 2 2 0 AAA domain MobB PF03205.14 gi|449067281|ref|YP_007434363.1| - 0.053 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PIF1 PF05970.14 gi|449067281|ref|YP_007434363.1| - 0.084 12.0 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 PIF1-like helicase Zeta_toxin PF06414.12 gi|449067281|ref|YP_007434363.1| - 0.092 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|449067281|ref|YP_007434363.1| - 0.1 12.6 0.1 0.45 10.5 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|449067281|ref|YP_007434363.1| - 0.1 13.0 0.0 0.36 11.2 0.0 2.0 2 0 0 2 2 1 0 RNA helicase Arf PF00025.21 gi|449067281|ref|YP_007434363.1| - 0.11 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|449067281|ref|YP_007434363.1| - 0.12 11.9 0.0 15 5.0 0.0 2.9 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain APS_kinase PF01583.20 gi|449067281|ref|YP_007434363.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_13 PF13166.6 gi|449067281|ref|YP_007434363.1| - 0.14 10.8 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|449067281|ref|YP_007434363.1| - 0.15 11.5 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CPT PF07931.12 gi|449067281|ref|YP_007434363.1| - 0.15 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_7 PF12775.7 gi|449067281|ref|YP_007434363.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_32 PF13654.6 gi|449067281|ref|YP_007434363.1| - 0.16 10.7 0.0 0.29 9.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|449067281|ref|YP_007434363.1| - 0.2 10.5 0.0 0.4 9.5 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 gi|449067281|ref|YP_007434363.1| - 0.24 11.5 0.0 0.41 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Pribosyltran_N PF13793.6 gi|449067282|ref|YP_007434364.1| - 3.9e-28 97.7 0.0 1.9e-27 95.5 0.0 2.0 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|449067282|ref|YP_007434364.1| - 2.7e-17 62.7 0.2 6.5e-17 61.5 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|449067282|ref|YP_007434364.1| - 6.4e-13 49.1 4.2 6.6e-13 49.1 2.2 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|449067282|ref|YP_007434364.1| - 0.0002 20.9 0.2 0.00051 19.5 0.1 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|449067282|ref|YP_007434364.1| - 0.0064 16.0 0.1 0.014 14.9 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase UPF0020 PF01170.18 gi|449067283|ref|YP_007434365.1| - 5.3e-22 78.5 0.0 2.6e-21 76.2 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|449067283|ref|YP_007434365.1| - 1.1e-11 44.9 0.1 5.9e-10 39.3 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.6 gi|449067283|ref|YP_007434365.1| - 1.8e-05 24.6 0.0 4.5e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067283|ref|YP_007434365.1| - 2.2e-05 25.1 0.0 6.6e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|449067283|ref|YP_007434365.1| - 8.9e-05 22.2 0.0 0.00018 21.2 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|449067283|ref|YP_007434365.1| - 0.0029 17.2 0.0 0.019 14.5 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase small domain N6-adenineMlase PF10237.9 gi|449067283|ref|YP_007434365.1| - 0.0058 16.4 0.0 0.0093 15.8 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase MethyltransfD12 PF02086.15 gi|449067283|ref|YP_007434365.1| - 0.0064 16.2 0.9 0.053 13.2 0.0 2.4 2 1 1 3 3 3 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_15 PF09445.10 gi|449067283|ref|YP_007434365.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.7 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|449067283|ref|YP_007434365.1| - 0.015 14.6 0.0 0.039 13.2 0.0 1.7 1 0 0 1 1 1 0 N-6 DNA Methylase PrmA PF06325.13 gi|449067283|ref|YP_007434365.1| - 0.028 13.8 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|449067283|ref|YP_007434365.1| - 0.032 14.9 0.0 0.092 13.4 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.11 gi|449067283|ref|YP_007434365.1| - 0.052 14.0 0.0 0.33 11.5 0.0 2.3 3 0 0 3 3 3 0 Eco57I restriction-modification methylase Lactamase_B_2 PF12706.7 gi|449067284|ref|YP_007434366.1| - 1.4e-17 63.8 0.0 4.3e-10 39.4 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|449067284|ref|YP_007434366.1| - 1.2e-05 25.4 0.1 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|449067284|ref|YP_007434366.1| - 0.01 15.5 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 0 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|449067284|ref|YP_007434366.1| - 0.06 13.2 0.0 0.35 10.7 0.0 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain RNA_binding PF01877.17 gi|449067285|ref|YP_007434367.1| - 3e-18 66.2 0.7 3.8e-18 65.9 0.7 1.1 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.6 gi|449067286|ref|YP_007434368.1| - 1.5e-10 41.8 0.2 3.4e-10 40.6 0.2 1.6 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|449067286|ref|YP_007434368.1| - 2.3e-09 37.8 0.2 3.3e-09 37.3 0.2 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|449067286|ref|YP_007434368.1| - 0.00016 21.8 0.2 0.00018 21.7 0.2 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|449067286|ref|YP_007434368.1| - 0.00031 20.9 0.0 0.00047 20.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|449067286|ref|YP_007434368.1| - 0.0014 18.4 0.2 0.075 12.7 0.1 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase P-mevalo_kinase PF04275.14 gi|449067286|ref|YP_007434368.1| - 0.026 14.5 0.1 3.1 7.8 0.0 2.3 1 1 1 2 2 2 0 Phosphomevalonate kinase LigT_PEase PF02834.16 gi|449067287|ref|YP_007434369.1| - 3.1e-28 97.8 0.0 1e-13 51.3 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|449067287|ref|YP_007434369.1| - 2.6e-15 56.6 0.0 3.5e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|449067287|ref|YP_007434369.1| - 8.2e-10 38.9 0.0 1.5e-09 38.1 0.0 1.4 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.12 gi|449067287|ref|YP_007434369.1| - 0.1 12.0 0.0 0.25 10.7 0.0 1.6 1 1 0 1 1 1 0 Coronavirus NS2A protein tRNA_NucTransf2 PF09249.11 gi|449067288|ref|YP_007434370.1| - 3.2e-42 143.4 0.0 8e-42 142.1 0.0 1.7 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|449067288|ref|YP_007434370.1| - 5.8e-16 58.6 0.2 1.5e-15 57.3 0.2 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|449067288|ref|YP_007434370.1| - 0.0003 21.0 0.0 0.00069 19.8 0.0 1.6 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DNA_pol_B_palm PF14792.6 gi|449067288|ref|YP_007434370.1| - 0.012 15.8 0.0 0.033 14.4 0.0 1.7 1 0 0 1 1 1 0 DNA polymerase beta palm Polbeta PF18765.1 gi|449067288|ref|YP_007434370.1| - 0.079 13.1 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase RIO1 PF01163.22 gi|449067289|ref|YP_007434371.1| - 0.0003 20.5 0.0 0.00042 19.9 0.0 1.3 1 0 0 1 1 1 1 RIO1 family zinc_ribbon_2 PF13240.6 gi|449067290|ref|YP_007434372.1| - 0.00075 19.1 3.6 0.14 12.0 0.5 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ACC PF17848.1 gi|449067290|ref|YP_007434372.1| - 0.0051 16.9 1.8 0.58 10.3 0.1 2.3 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|449067290|ref|YP_007434372.1| - 0.0076 16.3 1.2 0.66 10.1 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 DUF2688 PF10892.8 gi|449067290|ref|YP_007434372.1| - 0.0083 15.6 0.2 0.52 9.8 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2688) Rubredoxin_2 PF18073.1 gi|449067290|ref|YP_007434372.1| - 0.012 15.4 8.1 0.15 11.8 1.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Nudix_N_2 PF14803.6 gi|449067290|ref|YP_007434372.1| - 0.012 15.5 4.6 1 9.3 1.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal GFA PF04828.14 gi|449067290|ref|YP_007434372.1| - 0.012 15.9 0.2 0.52 10.7 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.19 gi|449067290|ref|YP_007434372.1| - 0.013 15.5 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|449067290|ref|YP_007434372.1| - 0.014 15.4 0.7 0.088 12.8 0.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|449067290|ref|YP_007434372.1| - 0.019 15.3 0.6 5.4 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF35_N PF12172.8 gi|449067290|ref|YP_007434372.1| - 0.027 14.3 1.0 1 9.3 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|449067290|ref|YP_007434372.1| - 0.028 13.8 5.7 0.54 9.7 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|449067290|ref|YP_007434372.1| - 0.058 13.0 1.3 0.88 9.2 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|449067290|ref|YP_007434372.1| - 0.075 13.2 4.3 1.8 8.7 4.3 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DUF2757 PF10955.8 gi|449067290|ref|YP_007434372.1| - 0.077 13.3 0.4 0.26 11.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) OrfB_Zn_ribbon PF07282.11 gi|449067290|ref|YP_007434372.1| - 0.085 12.8 0.3 7.5 6.6 0.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf_C2H2_13 PF18508.1 gi|449067290|ref|YP_007434372.1| - 0.15 11.7 3.8 0.44 10.2 0.4 2.2 2 0 0 2 2 2 0 Zinc finger domain zf-C2H2 PF00096.26 gi|449067290|ref|YP_007434372.1| - 0.3 11.6 3.8 11 6.7 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type TF_Zn_Ribbon PF08271.12 gi|449067290|ref|YP_007434372.1| - 0.41 10.2 5.9 3 7.4 0.2 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|449067290|ref|YP_007434372.1| - 0.42 10.5 4.3 3 7.8 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) ADK_lid PF05191.14 gi|449067290|ref|YP_007434372.1| - 0.47 10.5 4.3 2.9 8.0 4.3 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid Ogr_Delta PF04606.12 gi|449067290|ref|YP_007434372.1| - 0.54 10.3 3.5 6.7 6.8 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-HIT PF04438.16 gi|449067290|ref|YP_007434372.1| - 0.54 10.2 7.3 4.8 7.1 0.8 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-FPG_IleRS PF06827.14 gi|449067290|ref|YP_007434372.1| - 0.84 9.6 6.2 0.6 10.0 1.3 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.7 gi|449067290|ref|YP_007434372.1| - 2.3 8.3 5.8 11 6.1 1.1 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain Kelch_1 PF01344.25 gi|449067291|ref|YP_007434373.1| - 3.4e-24 84.2 30.4 3.7e-06 26.4 0.4 6.3 6 0 0 6 6 5 5 Kelch motif Kelch_6 PF13964.6 gi|449067291|ref|YP_007434373.1| - 1.6e-20 72.6 25.8 5.1e-06 26.6 0.3 6.2 3 1 3 6 6 6 5 Kelch motif fn3 PF00041.21 gi|449067291|ref|YP_007434373.1| - 8.3e-17 61.3 16.2 1.4e-09 38.1 0.9 4.0 2 1 1 3 3 3 2 Fibronectin type III domain Kelch_2 PF07646.15 gi|449067291|ref|YP_007434373.1| - 2.4e-15 55.8 16.2 0.008 16.1 0.1 6.7 6 0 0 6 6 6 6 Kelch motif Kelch_5 PF13854.6 gi|449067291|ref|YP_007434373.1| - 3.4e-14 52.4 25.5 0.00015 21.7 0.3 6.0 5 0 0 5 5 5 5 Kelch motif Kelch_4 PF13418.6 gi|449067291|ref|YP_007434373.1| - 7e-12 45.2 21.0 0.012 15.7 0.0 6.0 6 0 0 6 6 6 4 Galactose oxidase, central domain Kelch_3 PF13415.6 gi|449067291|ref|YP_007434373.1| - 4.5e-11 42.7 17.3 0.014 15.7 0.6 5.8 5 0 0 5 5 5 4 Galactose oxidase, central domain DUF5410 PF17422.2 gi|449067291|ref|YP_007434373.1| - 0.22 10.7 1.9 0.31 10.3 1.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5410) DUF2369 PF10179.9 gi|449067291|ref|YP_007434373.1| - 0.3 11.5 1.8 10 6.6 0.3 2.7 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2369) DUF5104 PF17117.5 gi|449067291|ref|YP_007434373.1| - 0.97 9.9 7.3 7.5 7.0 1.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF5104) Pur_ac_phosph_N PF16656.5 gi|449067291|ref|YP_007434373.1| - 3.4 8.3 17.5 8.9 7.0 9.0 4.0 2 1 0 2 2 2 0 Purple acid Phosphatase, N-terminal domain adh_short PF00106.25 gi|449067292|ref|YP_007434374.1| - 6.9e-37 126.8 0.0 1.1e-36 126.2 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|449067292|ref|YP_007434374.1| - 9.9e-31 107.1 0.0 1.3e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|449067292|ref|YP_007434374.1| - 0.17 11.8 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 KR domain TatD_DNase PF01026.21 gi|449067293|ref|YP_007434375.1| - 2.3e-37 128.8 0.1 6.2e-37 127.4 0.1 1.6 1 1 0 1 1 1 1 TatD related DNase SSPI PF14098.6 gi|449067293|ref|YP_007434375.1| - 0.14 12.3 0.4 12 6.2 0.3 2.6 2 0 0 2 2 2 0 Small, acid-soluble spore protein I SPESP1 PF15754.5 gi|449067294|ref|YP_007434376.1| - 0.0084 15.3 1.0 0.012 14.9 1.0 1.2 1 0 0 1 1 1 1 Sperm equatorial segment protein 1 DUF3908 PF13048.6 gi|449067294|ref|YP_007434376.1| - 0.012 15.9 0.2 0.014 15.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3908) Pox_C7_F8A PF03287.14 gi|449067294|ref|YP_007434376.1| - 0.096 12.7 4.0 0.32 11.0 2.8 2.0 1 1 1 2 2 2 0 Poxvirus C7/F8A protein ABC_tran PF00005.27 gi|449067295|ref|YP_007434377.1| - 4.3e-28 98.5 0.0 5.8e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067295|ref|YP_007434377.1| - 6.4e-14 52.5 0.9 3.7e-06 27.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449067295|ref|YP_007434377.1| - 7e-06 25.6 0.2 0.0046 16.4 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|449067295|ref|YP_007434377.1| - 6.8e-05 22.7 0.1 0.32 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|449067295|ref|YP_007434377.1| - 0.0022 18.3 0.2 0.01 16.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|449067295|ref|YP_007434377.1| - 0.0048 16.6 0.0 0.02 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|449067295|ref|YP_007434377.1| - 0.011 16.2 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|449067295|ref|YP_007434377.1| - 0.016 14.9 0.1 0.03 14.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|449067295|ref|YP_007434377.1| - 0.037 14.0 0.2 0.18 11.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|449067295|ref|YP_007434377.1| - 0.039 13.9 0.0 0.068 13.1 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|449067295|ref|YP_007434377.1| - 0.044 13.4 0.0 0.15 11.7 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|449067295|ref|YP_007434377.1| - 0.072 13.5 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|449067295|ref|YP_007434377.1| - 0.075 13.1 0.1 0.34 11.0 0.0 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain AAA PF00004.29 gi|449067295|ref|YP_007434377.1| - 0.1 13.1 0.6 0.27 11.7 0.2 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sid-5 PF17204.3 gi|449067296|ref|YP_007434378.1| - 6.2 7.1 14.5 0.45 10.7 0.2 4.6 4 0 0 4 4 4 0 Sid-5 family LDcluster4 PF18306.1 gi|449067297|ref|YP_007434379.1| - 1e-18 67.4 0.0 1.3e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|449067297|ref|YP_007434379.1| - 5.9e-06 26.4 0.0 0.00025 21.1 0.0 2.1 1 1 0 2 2 2 1 Possible lysine decarboxylase LSDAT_prok PF18171.1 gi|449067297|ref|YP_007434379.1| - 7.7e-05 22.0 0.0 0.00042 19.6 0.0 1.9 2 0 0 2 2 2 1 SLOG in TRPM, prokaryote LD_cluster2 PF18163.1 gi|449067297|ref|YP_007434379.1| - 0.011 15.3 0.0 0.6 9.6 0.0 2.3 2 0 0 2 2 2 0 SLOG cluster2 Nuc_deoxyrib_tr PF05014.15 gi|449067297|ref|YP_007434379.1| - 0.022 14.8 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Rib_5-P_isom_A PF06026.14 gi|449067302|ref|YP_007434384.1| - 3.1e-43 147.4 0.9 3.8e-43 147.1 0.9 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Sugar-bind PF04198.13 gi|449067302|ref|YP_007434384.1| - 0.0037 16.4 0.0 0.0054 15.9 0.0 1.2 1 0 0 1 1 1 1 Putative sugar-binding domain HMGL-like PF00682.19 gi|449067304|ref|YP_007434386.1| - 7e-72 242.2 2.9 9.4e-72 241.7 2.9 1.2 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.21 gi|449067304|ref|YP_007434386.1| - 8.4e-15 54.5 1.0 2.6e-13 49.7 0.4 3.1 3 0 0 3 3 3 1 Lrp/AsnC ligand binding domain ACT_4 PF13291.6 gi|449067304|ref|YP_007434386.1| - 0.00015 22.3 3.3 0.015 15.9 0.2 4.2 4 0 0 4 4 4 1 ACT domain AP_endonuc_2 PF01261.24 gi|449067304|ref|YP_007434386.1| - 0.0018 17.8 0.3 0.0058 16.1 0.3 1.9 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NapD PF03927.13 gi|449067304|ref|YP_007434386.1| - 0.002 18.1 0.5 0.015 15.3 0.5 2.5 2 0 0 2 2 2 1 NapD protein CinA_KH PF18146.1 gi|449067304|ref|YP_007434386.1| - 0.0052 16.9 0.3 0.028 14.6 0.1 2.4 2 0 0 2 2 2 1 Damage-inducible protein CinA KH domain FtsX_ECD PF18075.1 gi|449067304|ref|YP_007434386.1| - 0.034 14.8 2.1 30 5.3 0.0 3.8 3 1 0 3 3 3 0 FtsX extracellular domain OmpA_membrane PF01389.17 gi|449067304|ref|YP_007434386.1| - 0.04 13.6 0.0 0.095 12.4 0.0 1.6 1 0 0 1 1 1 0 OmpA-like transmembrane domain Glyco_hydro_97 PF10566.9 gi|449067304|ref|YP_007434386.1| - 0.058 12.7 0.1 0.092 12.0 0.1 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 ExbD PF02472.16 gi|449067304|ref|YP_007434386.1| - 0.15 12.3 0.3 0.44 10.7 0.1 1.9 2 0 0 2 2 2 0 Biopolymer transport protein ExbD/TolR SurA_N_2 PF13623.6 gi|449067304|ref|YP_007434386.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 SurA N-terminal domain Ca_bind_SSO6904 PF18249.1 gi|449067305|ref|YP_007434387.1| - 1.1e-41 141.1 5.9 1.2e-41 141.0 5.9 1.0 1 0 0 1 1 1 1 Calcium binding protein SSO6904 IL31 PF15209.6 gi|449067305|ref|YP_007434387.1| - 0.0074 16.1 0.2 0.0078 16.0 0.2 1.2 1 0 0 1 1 1 1 Interleukin 31 DUF2513 PF10711.9 gi|449067305|ref|YP_007434387.1| - 0.013 15.8 0.2 0.015 15.6 0.2 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) AA_kinase PF00696.28 gi|449067306|ref|YP_007434388.1| - 1.1e-27 97.2 0.3 3.5e-27 95.6 0.3 1.7 1 1 0 1 1 1 1 Amino acid kinase family Cren7 PF11520.8 gi|449067307|ref|YP_007434389.1| - 4.7e-30 103.3 2.3 5e-30 103.2 2.3 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 adh_short_C2 PF13561.6 gi|449067308|ref|YP_007434390.1| - 3.3e-37 128.3 0.0 5e-37 127.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449067308|ref|YP_007434390.1| - 6e-36 123.7 0.0 7.1e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449067308|ref|YP_007434390.1| - 1.3e-05 25.2 0.0 2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.20 gi|449067308|ref|YP_007434390.1| - 0.015 15.4 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase THUMP PF02926.17 gi|449067309|ref|YP_007434391.1| - 2.3e-07 31.0 0.6 4.7e-07 30.0 0.1 1.8 2 0 0 2 2 2 1 THUMP domain SRP54 PF00448.22 gi|449067310|ref|YP_007434392.1| - 1.2e-69 233.9 0.0 1.9e-69 233.3 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|449067310|ref|YP_007434392.1| - 1.3e-29 102.7 1.0 8e-29 100.2 0.5 2.4 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|449067310|ref|YP_007434392.1| - 4.4e-15 55.7 0.5 4.4e-15 55.7 0.5 2.6 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|449067310|ref|YP_007434392.1| - 1.3e-05 25.3 0.0 0.00011 22.3 0.0 2.5 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|449067310|ref|YP_007434392.1| - 0.0001 21.9 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|449067310|ref|YP_007434392.1| - 0.00017 21.2 0.1 0.00085 19.0 0.1 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|449067310|ref|YP_007434392.1| - 0.0017 18.1 0.2 0.0067 16.2 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449067310|ref|YP_007434392.1| - 0.0021 18.3 0.0 0.007 16.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain PFOR_II PF17147.4 gi|449067310|ref|YP_007434392.1| - 0.0032 17.7 0.1 1.7 9.0 0.0 3.4 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II AAA_31 PF13614.6 gi|449067310|ref|YP_007434392.1| - 0.0034 17.3 0.2 0.013 15.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|449067310|ref|YP_007434392.1| - 0.0047 17.4 0.9 0.022 15.2 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|449067310|ref|YP_007434392.1| - 0.005 17.0 0.0 0.013 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|449067310|ref|YP_007434392.1| - 0.007 15.4 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|449067310|ref|YP_007434392.1| - 0.0075 16.2 0.3 0.02 14.8 0.3 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B G-alpha PF00503.20 gi|449067310|ref|YP_007434392.1| - 0.0084 15.3 0.0 0.025 13.7 0.0 1.5 1 1 0 1 1 1 1 G-protein alpha subunit Zeta_toxin PF06414.12 gi|449067310|ref|YP_007434392.1| - 0.0093 15.3 0.0 0.019 14.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.6 gi|449067310|ref|YP_007434392.1| - 0.0098 16.4 0.5 0.032 14.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain TrbI_Ftype PF09677.10 gi|449067310|ref|YP_007434392.1| - 0.022 15.1 0.1 0.053 13.8 0.1 1.6 1 0 0 1 1 1 0 Type-F conjugative transfer system protein (TrbI_Ftype) ResIII PF04851.15 gi|449067310|ref|YP_007434392.1| - 0.03 14.3 1.9 0.1 12.6 0.2 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit ATP_bind_1 PF03029.17 gi|449067310|ref|YP_007434392.1| - 0.034 13.9 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|449067310|ref|YP_007434392.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|449067310|ref|YP_007434392.1| - 0.15 12.4 0.0 0.41 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain eIF-5a PF01287.20 gi|449067311|ref|YP_007434393.1| - 8.5e-09 35.4 0.1 1.5e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|449067311|ref|YP_007434393.1| - 6.9e-07 29.2 0.0 2.8e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|449067311|ref|YP_007434393.1| - 0.031 14.3 0.1 0.069 13.2 0.1 1.6 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain TP6A_N PF04406.14 gi|449067312|ref|YP_007434394.1| - 1.1e-20 73.4 0.1 1.8e-20 72.7 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase GTP_EFTU_D4 PF14578.6 gi|449067312|ref|YP_007434394.1| - 0.074 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 4 DUF2399 PF09664.10 gi|449067312|ref|YP_007434394.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|449067313|ref|YP_007434395.1| - 2.5e-65 219.1 0.5 5.4e-65 218.1 0.5 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.6 gi|449067313|ref|YP_007434395.1| - 8.7e-11 41.8 0.0 1.9e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|449067313|ref|YP_007434395.1| - 9.5e-10 39.0 0.0 1.6e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|449067313|ref|YP_007434395.1| - 2.5e-05 23.3 0.0 2.5e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|449067313|ref|YP_007434395.1| - 0.00056 20.3 0.0 0.00056 20.3 0.0 2.2 3 0 0 3 3 3 1 Ribosomal protein S13/S18 OTCace_N PF02729.21 gi|449067313|ref|YP_007434395.1| - 1.6 8.7 3.3 44 4.1 0.0 2.9 2 1 1 3 3 3 0 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DS PF01916.17 gi|449067314|ref|YP_007434396.1| - 7.3e-101 337.2 0.0 8.9e-101 336.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Kindlin_2_N PF18124.1 gi|449067314|ref|YP_007434396.1| - 0.054 13.7 0.1 0.81 9.9 0.0 2.3 2 0 0 2 2 2 0 Kindlin-2 N-terminal domain RtcB PF01139.17 gi|449067315|ref|YP_007434397.1| - 6.9e-162 539.3 0.3 7.9e-162 539.1 0.3 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB YHS PF04945.13 gi|449067316|ref|YP_007434398.1| - 0.0044 17.1 0.5 0.0093 16.0 0.1 1.8 2 0 0 2 2 2 1 YHS domain YonK PF09642.10 gi|449067316|ref|YP_007434398.1| - 0.015 15.4 3.2 0.089 13.0 2.3 2.0 2 0 0 2 2 2 0 YonK protein DEAD PF00270.29 gi|449067317|ref|YP_007434399.1| - 7.2e-30 104.0 0.0 4.1e-29 101.6 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|449067317|ref|YP_007434399.1| - 5.2e-16 59.0 0.1 1.3e-14 54.5 0.0 3.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|449067317|ref|YP_007434399.1| - 2.2e-08 34.3 0.1 2.2e-07 31.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|449067317|ref|YP_007434399.1| - 3.9e-08 33.3 0.0 0.00011 22.0 0.0 2.5 1 1 1 2 2 2 2 DEAD/H associated SNF2_N PF00176.23 gi|449067317|ref|YP_007434399.1| - 0.0025 16.6 0.0 0.0041 15.9 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain HTH_5 PF01022.20 gi|449067317|ref|YP_007434399.1| - 0.0042 16.9 0.2 0.017 15.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|449067317|ref|YP_007434399.1| - 0.02 14.5 0.1 0.084 12.5 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding AAA_19 PF13245.6 gi|449067317|ref|YP_007434399.1| - 0.058 13.7 0.0 0.28 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fe_dep_repress PF01325.19 gi|449067317|ref|YP_007434399.1| - 0.097 12.9 0.1 8.5 6.7 0.1 2.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|449067317|ref|YP_007434399.1| - 0.11 12.3 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Glyco_transf_4 PF13439.6 gi|449067317|ref|YP_007434399.1| - 0.11 12.4 0.0 5.2 7.0 0.0 2.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 HTH_28 PF13518.6 gi|449067317|ref|YP_007434399.1| - 0.15 12.2 0.0 0.54 10.4 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain Alba PF01918.21 gi|449067318|ref|YP_007434400.1| - 6.6e-14 51.5 0.5 8.6e-14 51.1 0.5 1.2 1 0 0 1 1 1 1 Alba DUF5077 PF16871.5 gi|449067318|ref|YP_007434400.1| - 0.066 13.1 0.1 0.066 13.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5077) Topoisom_bac PF01131.20 gi|449067319|ref|YP_007434401.1| - 8.9e-72 242.3 0.3 1.8e-71 241.4 0.3 1.5 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|449067319|ref|YP_007434401.1| - 2e-23 82.6 0.1 7.6e-23 80.7 0.1 2.1 1 0 0 1 1 1 1 Toprim domain zf_Rg PF17915.1 gi|449067319|ref|YP_007434401.1| - 1.8e-11 43.3 0.9 1.8e-11 43.3 0.9 2.0 2 0 0 2 2 2 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|449067319|ref|YP_007434401.1| - 6.4e-09 35.8 0.2 5.1e-08 32.9 0.2 2.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|449067319|ref|YP_007434401.1| - 9.3e-05 22.5 0.0 0.00032 20.7 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit zinc_ribbon_2 PF13240.6 gi|449067319|ref|YP_007434401.1| - 9.3e-05 22.0 0.9 9.3e-05 22.0 0.9 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Toprim_4 PF13662.6 gi|449067319|ref|YP_007434401.1| - 0.00095 19.6 0.0 0.0035 17.8 0.0 2.0 1 0 0 1 1 1 1 Toprim domain zf-ribbon_3 PF13248.6 gi|449067319|ref|YP_007434401.1| - 0.0015 17.8 1.6 0.0015 17.8 1.6 2.3 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|449067319|ref|YP_007434401.1| - 0.0041 17.1 0.5 0.072 13.1 0.1 2.4 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|449067319|ref|YP_007434401.1| - 0.0042 17.1 0.1 0.0042 17.1 0.1 2.1 2 0 0 2 2 2 1 Double zinc ribbon zf-C2HC5 PF06221.13 gi|449067319|ref|YP_007434401.1| - 0.0055 16.7 0.8 0.013 15.4 0.8 1.6 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type Helicase_C PF00271.31 gi|449067319|ref|YP_007434401.1| - 0.012 16.0 0.2 1.2 9.5 0.0 4.1 4 1 1 5 5 5 0 Helicase conserved C-terminal domain zinc_ribbon_15 PF17032.5 gi|449067319|ref|YP_007434401.1| - 0.024 15.4 0.8 0.062 14.1 0.2 2.0 2 0 0 2 2 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|449067319|ref|YP_007434401.1| - 0.15 12.1 2.0 1.9 8.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|449067319|ref|YP_007434401.1| - 0.19 11.8 4.3 0.48 10.6 0.7 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_S25 PF03297.15 gi|449067319|ref|YP_007434401.1| - 0.26 11.5 1.8 19 5.5 0.0 3.4 3 0 0 3 3 2 0 S25 ribosomal protein zf-C3HC4_3 PF13920.6 gi|449067319|ref|YP_007434401.1| - 0.29 11.0 3.6 0.32 10.9 0.6 2.3 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) BNR_6 PF15899.5 gi|449067319|ref|YP_007434401.1| - 0.31 11.2 1.2 0.53 10.5 0.0 2.1 2 0 0 2 2 1 0 BNR-Asp box repeat Alba PF01918.21 gi|449067320|ref|YP_007434402.1| - 1.1e-22 79.6 0.6 1.4e-22 79.2 0.6 1.2 1 0 0 1 1 1 1 Alba DUF3954 PF13128.6 gi|449067320|ref|YP_007434402.1| - 0.092 12.6 0.6 0.26 11.1 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) ResIII PF04851.15 gi|449067324|ref|YP_007434406.1| - 1.6e-24 86.8 3.6 1.8e-24 86.6 0.1 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|449067324|ref|YP_007434406.1| - 6.6e-24 84.5 0.4 1.4e-23 83.4 0.1 1.6 1 1 1 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|449067324|ref|YP_007434406.1| - 2.2e-18 66.6 1.2 3.9e-18 65.8 0.2 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|449067324|ref|YP_007434406.1| - 1.1e-09 38.4 0.5 1.1e-08 35.1 0.0 2.5 2 1 1 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|449067324|ref|YP_007434406.1| - 0.00015 20.7 0.3 0.00092 18.0 0.3 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_RecD PF05127.14 gi|449067324|ref|YP_007434406.1| - 0.0013 18.6 0.0 0.0028 17.5 0.0 1.6 1 0 0 1 1 1 1 Helicase AAA_22 PF13401.6 gi|449067324|ref|YP_007434406.1| - 0.0014 19.0 0.4 0.0095 16.2 0.1 2.5 3 1 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|449067324|ref|YP_007434406.1| - 0.0017 17.6 0.0 0.0038 16.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.17 gi|449067324|ref|YP_007434406.1| - 0.02 14.7 0.1 3.5 7.3 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|449067324|ref|YP_007434406.1| - 0.079 12.7 0.1 0.44 10.2 0.0 2.3 3 1 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|449067324|ref|YP_007434406.1| - 0.17 11.6 1.3 3.8 7.2 0.0 2.8 2 1 1 3 3 3 0 AAA domain Lig_C PF18330.1 gi|449067324|ref|YP_007434406.1| - 1.4 8.9 6.2 5.7 7.0 0.4 3.1 3 1 0 3 3 3 0 Ligase Pab1020 C-terminal region CutA1 PF03091.15 gi|449067326|ref|YP_007434408.1| - 3e-35 120.0 0.3 3.4e-35 119.9 0.3 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein HisK_N PF09385.10 gi|449067326|ref|YP_007434408.1| - 0.016 15.2 0.8 0.035 14.1 0.8 1.6 1 1 0 1 1 1 0 Histidine kinase N terminal Glu-tRNAGln PF02686.15 gi|449067327|ref|YP_007434409.1| - 2.2e-18 66.3 0.2 3e-18 65.9 0.2 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit AF0941-like PF14591.6 gi|449067327|ref|YP_007434409.1| - 0.00078 20.0 1.0 0.00089 19.8 1.0 1.1 1 0 0 1 1 1 1 AF0941-like Amidase PF01425.21 gi|449067328|ref|YP_007434410.1| - 1.7e-142 475.6 0.0 1.9e-142 475.4 0.0 1.0 1 0 0 1 1 1 1 Amidase DASH_Duo1 PF08651.10 gi|449067328|ref|YP_007434410.1| - 0.14 11.9 0.2 1.5 8.7 0.1 2.6 1 1 1 2 2 2 0 DASH complex subunit Duo1 Wyosine_form PF08608.12 gi|449067329|ref|YP_007434411.1| - 4.5e-22 78.2 0.0 1e-21 77.0 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|449067329|ref|YP_007434411.1| - 2.2e-21 77.0 0.0 4.1e-21 76.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CTP-dep_RFKase PF01982.16 gi|449067330|ref|YP_007434412.1| - 5.5e-40 136.2 0.0 6.5e-40 136.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|449067330|ref|YP_007434412.1| - 0.07 13.1 0.1 0.07 13.1 0.1 1.8 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF357 PF04010.13 gi|449067331|ref|YP_007434413.1| - 4.7e-17 61.8 0.7 9.3e-17 60.9 0.3 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|449067331|ref|YP_007434413.1| - 2.3e-14 53.8 0.2 5.2e-14 52.6 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like Lambda_Kil PF06301.11 gi|449067331|ref|YP_007434413.1| - 0.026 14.1 0.0 0.076 12.6 0.0 1.7 2 0 0 2 2 2 0 Bacteriophage lambda Kil protein DUF4085 PF13315.6 gi|449067331|ref|YP_007434413.1| - 0.052 13.2 0.3 0.36 10.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4085) Urm1 PF09138.11 gi|449067331|ref|YP_007434413.1| - 0.071 13.5 1.0 0.15 12.4 0.2 1.9 2 1 0 2 2 2 0 Urm1 (Ubiquitin related modifier) FAD_syn PF06574.12 gi|449067331|ref|YP_007434413.1| - 0.13 12.1 0.1 0.71 9.7 0.1 2.2 1 1 0 1 1 1 0 FAD synthetase Intron_maturas2 PF01348.21 gi|449067331|ref|YP_007434413.1| - 0.15 12.0 1.9 0.17 11.8 0.1 1.9 2 0 0 2 2 2 0 Type II intron maturase TP_methylase PF00590.20 gi|449067332|ref|YP_007434414.1| - 2.8e-23 83.0 0.0 3.3e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1894 PF08979.11 gi|449067332|ref|YP_007434414.1| - 0.064 13.6 0.1 3 8.3 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1894) Metallophos PF00149.28 gi|449067333|ref|YP_007434415.1| - 4.1e-07 30.7 0.6 1.5e-06 28.8 0.5 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|449067333|ref|YP_007434415.1| - 1.6e-06 28.4 0.0 2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_L4 PF00573.22 gi|449067333|ref|YP_007434415.1| - 0.05 13.3 0.9 0.075 12.7 0.9 1.3 1 0 0 1 1 1 0 Ribosomal protein L4/L1 family DpaA_N PF16924.5 gi|449067333|ref|YP_007434415.1| - 0.07 13.2 0.5 4.9 7.3 0.1 2.7 1 1 2 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain TBP PF00352.21 gi|449067334|ref|YP_007434416.1| - 2e-55 184.7 0.2 2.1e-29 101.3 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|449067334|ref|YP_007434416.1| - 9e-07 28.9 0.0 0.024 14.8 0.0 2.6 1 1 2 3 3 3 2 Domain of unknown function (DUF3378) NMT1_3 PF16868.5 gi|449067334|ref|YP_007434416.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 0 NMT1-like family DRTGG PF07085.12 gi|449067334|ref|YP_007434416.1| - 0.037 13.8 0.1 1.9 8.3 0.0 2.2 1 1 1 2 2 2 0 DRTGG domain DUF5622 PF18533.1 gi|449067335|ref|YP_007434417.1| - 9.3e-27 93.0 4.8 1.1e-26 92.8 4.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) DUF373 PF04123.13 gi|449067336|ref|YP_007434418.1| - 1.1e-86 291.3 24.4 1.4e-86 291.0 24.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) NPCC PF08058.11 gi|449067336|ref|YP_007434418.1| - 4.2 7.4 5.6 3.4 7.7 0.6 2.3 2 0 0 2 2 2 0 Nuclear pore complex component DUF724 PF05266.14 gi|449067337|ref|YP_007434419.1| - 0.003 17.4 15.4 0.003 17.4 15.4 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF724) TPR_MLP1_2 PF07926.12 gi|449067337|ref|YP_007434419.1| - 0.0054 16.8 9.0 0.0054 16.8 9.0 5.0 1 1 4 5 5 5 2 TPR/MLP1/MLP2-like protein ATG16 PF08614.11 gi|449067337|ref|YP_007434419.1| - 0.0056 16.9 52.7 0.0059 16.8 21.5 3.2 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|449067337|ref|YP_007434419.1| - 0.0085 15.0 66.3 0.038 12.9 21.2 3.1 1 1 2 3 3 3 2 Spc7 kinetochore protein Trimer_CC PF08954.11 gi|449067337|ref|YP_007434419.1| - 0.012 15.1 1.3 0.012 15.1 1.3 4.5 4 2 0 4 4 4 0 Trimerisation motif Baculo_PEP_C PF04513.12 gi|449067337|ref|YP_007434419.1| - 0.02 15.0 22.0 0.63 10.1 2.7 3.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FUSC PF04632.12 gi|449067337|ref|YP_007434419.1| - 0.029 12.9 4.2 0.47 8.9 0.5 2.0 1 1 0 2 2 2 0 Fusaric acid resistance protein family DUF948 PF06103.11 gi|449067337|ref|YP_007434419.1| - 0.031 14.5 17.2 0.3 11.4 3.1 3.7 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 gi|449067337|ref|YP_007434419.1| - 0.036 13.1 51.5 0.017 14.1 17.5 2.8 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 SlyX PF04102.12 gi|449067337|ref|YP_007434419.1| - 0.041 14.5 2.6 0.041 14.5 2.6 5.4 3 3 1 4 4 2 0 SlyX CENP-F_leu_zip PF10473.9 gi|449067337|ref|YP_007434419.1| - 0.063 13.3 65.3 0.021 14.8 27.9 3.6 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LPP PF04728.13 gi|449067337|ref|YP_007434419.1| - 0.079 13.4 0.1 0.079 13.4 0.1 5.2 4 2 1 6 6 5 0 Lipoprotein leucine-zipper Fez1 PF06818.15 gi|449067337|ref|YP_007434419.1| - 0.15 12.5 55.5 0.44 11.0 27.1 2.7 1 1 1 2 2 2 0 Fez1 HsbA PF12296.8 gi|449067337|ref|YP_007434419.1| - 0.17 12.3 10.5 0.13 12.7 3.4 3.3 1 1 1 3 3 3 0 Hydrophobic surface binding protein A COG5 PF10392.9 gi|449067337|ref|YP_007434419.1| - 0.31 11.2 30.1 0.081 13.1 9.3 3.4 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Tup_N PF08581.10 gi|449067337|ref|YP_007434419.1| - 0.48 10.8 46.9 0.08 13.3 5.7 5.0 1 1 2 4 4 4 0 Tup N-terminal DASH_Dam1 PF08653.10 gi|449067337|ref|YP_007434419.1| - 0.77 9.6 6.6 15 5.5 0.2 3.8 2 2 1 4 4 4 0 DASH complex subunit Dam1 NPV_P10 PF05531.12 gi|449067337|ref|YP_007434419.1| - 1.2 9.7 30.4 0.44 11.0 5.5 5.0 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|449067337|ref|YP_007434419.1| - 1.3 9.0 41.4 0.34 10.9 7.0 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|449067337|ref|YP_007434419.1| - 1.6 7.8 63.7 1 8.4 20.4 3.5 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 MCPsignal PF00015.21 gi|449067337|ref|YP_007434419.1| - 1.7 8.4 22.3 0.2 11.5 1.5 3.1 1 1 3 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain MtrB PF05440.12 gi|449067337|ref|YP_007434419.1| - 2.4 8.6 4.1 2.1 8.8 0.1 2.9 3 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF3584 PF12128.8 gi|449067337|ref|YP_007434419.1| - 3.2 5.1 50.1 0.56 7.6 13.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|449067337|ref|YP_007434419.1| - 3.5 7.9 65.0 0.81 9.9 7.9 5.2 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain RVT_3 PF13456.6 gi|449067337|ref|YP_007434419.1| - 4.4 7.1 9.4 0.59 10.0 1.2 3.0 2 1 1 3 3 3 0 Reverse transcriptase-like FlgN PF05130.12 gi|449067337|ref|YP_007434419.1| - 4.6 7.7 48.5 0.28 11.7 10.8 4.4 1 1 4 5 5 5 0 FlgN protein TMPIT PF07851.13 gi|449067337|ref|YP_007434419.1| - 7.9 5.6 41.9 0.12 11.6 12.7 3.0 1 1 1 2 2 2 0 TMPIT-like protein DUF812 PF05667.11 gi|449067337|ref|YP_007434419.1| - 8.3 5.2 62.3 8.7 5.1 10.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF812) ERM PF00769.19 gi|449067337|ref|YP_007434419.1| - 9.4 6.0 55.4 0.36 10.6 28.0 2.9 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DASH_Dad1 PF08649.10 gi|449067337|ref|YP_007434419.1| - 9.4 6.5 13.8 3.9 7.7 0.4 4.7 3 1 2 5 5 5 0 DASH complex subunit Dad1 Gar1 PF04410.14 gi|449067338|ref|YP_007434420.1| - 0.0043 16.8 0.0 0.0049 16.7 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|449067339|ref|YP_007434421.1| - 7.8e-23 80.3 0.3 4.7e-14 52.2 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|449067339|ref|YP_007434421.1| - 1.8e-14 53.0 0.5 2.9e-14 52.3 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|449067339|ref|YP_007434421.1| - 0.0002 21.0 1.7 0.00046 19.8 1.7 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|449067339|ref|YP_007434421.1| - 0.0018 17.8 1.1 0.0034 16.9 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 Ribosomal_S27e PF01667.17 gi|449067339|ref|YP_007434421.1| - 0.0052 16.5 0.2 0.0097 15.6 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 Sigma70_r4_2 PF08281.12 gi|449067339|ref|YP_007434421.1| - 0.015 15.0 0.2 0.046 13.4 0.2 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 MA3 PF02847.17 gi|449067339|ref|YP_007434421.1| - 0.018 15.0 0.2 0.12 12.3 0.2 2.2 1 1 1 2 2 2 0 MA3 domain GerE PF00196.19 gi|449067339|ref|YP_007434421.1| - 0.042 13.4 2.6 0.058 12.9 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|449067339|ref|YP_007434421.1| - 0.071 13.1 0.2 0.21 11.5 0.2 1.9 1 0 0 1 1 1 0 HTH domain DUF2089 PF09862.9 gi|449067339|ref|YP_007434421.1| - 0.088 12.8 0.9 0.23 11.5 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_23 PF13384.6 gi|449067339|ref|YP_007434421.1| - 0.096 12.5 0.0 0.29 11.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Terminase_5 PF06056.12 gi|449067339|ref|YP_007434421.1| - 0.56 10.1 2.3 5 7.1 0.0 2.9 3 0 0 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) TRM PF02005.16 gi|449067341|ref|YP_007434423.1| - 1.3e-85 287.8 0.6 1.5e-85 287.7 0.6 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|449067341|ref|YP_007434423.1| - 0.0057 16.4 0.0 0.0083 15.9 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|449067341|ref|YP_007434423.1| - 0.006 16.1 0.2 0.016 14.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain OrfB_Zn_ribbon PF07282.11 gi|449067341|ref|YP_007434423.1| - 0.01 15.7 0.6 0.022 14.7 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Methyltransf_16 PF10294.9 gi|449067341|ref|YP_007434423.1| - 0.015 15.0 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase DNA_methylase PF00145.17 gi|449067341|ref|YP_007434423.1| - 0.054 12.8 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase C1_1 PF00130.22 gi|449067341|ref|YP_007434423.1| - 0.091 12.7 1.7 0.19 11.7 1.7 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PrmA PF06325.13 gi|449067341|ref|YP_007434423.1| - 0.096 12.1 0.3 0.14 11.5 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HypA PF01155.19 gi|449067341|ref|YP_007434423.1| - 0.096 12.7 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_Rg PF17915.1 gi|449067341|ref|YP_007434423.1| - 0.26 10.7 2.4 0.28 10.6 0.7 1.9 2 0 0 2 2 2 0 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|449067341|ref|YP_007434423.1| - 0.77 9.9 4.7 1.8 8.7 4.7 1.6 1 0 0 1 1 1 0 Zinc ribbon domain HTH_3 PF01381.22 gi|449067342|ref|YP_007434424.1| - 3.9e-10 39.6 0.1 9.4e-10 38.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|449067342|ref|YP_007434424.1| - 6.1e-07 29.4 0.4 1.7e-06 27.9 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|449067342|ref|YP_007434424.1| - 8.7e-05 22.9 0.0 0.00022 21.6 0.0 1.7 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|449067342|ref|YP_007434424.1| - 0.00064 20.0 0.0 0.001 19.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Takusan PF04822.13 gi|449067342|ref|YP_007434424.1| - 0.0026 17.6 0.6 0.011 15.6 0.6 2.1 1 0 0 1 1 1 1 Takusan HTH_11 PF08279.12 gi|449067342|ref|YP_007434424.1| - 0.015 15.3 0.0 0.059 13.3 0.0 2.1 1 0 0 1 1 1 0 HTH domain RTP1_C1 PF10363.9 gi|449067342|ref|YP_007434424.1| - 0.019 15.1 0.9 0.038 14.2 0.4 1.7 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 HTH_25 PF13413.6 gi|449067342|ref|YP_007434424.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain UvrB PF12344.8 gi|449067342|ref|YP_007434424.1| - 0.069 13.0 0.3 0.36 10.7 0.0 2.3 2 0 0 2 2 2 0 Ultra-violet resistance protein B DUF61 PF01886.16 gi|449067343|ref|YP_007434425.1| - 2.1e-25 89.2 0.2 2.5e-25 89.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Fibrillarin PF01269.17 gi|449067344|ref|YP_007434426.1| - 6.3e-101 336.2 0.2 7.3e-101 336.0 0.2 1.0 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|449067344|ref|YP_007434426.1| - 0.025 14.2 0.0 0.084 12.5 0.0 1.8 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|449067344|ref|YP_007434426.1| - 0.044 13.5 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF1961 PF09224.11 gi|449067344|ref|YP_007434426.1| - 0.11 11.9 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1961) Ntox33 PF15533.6 gi|449067344|ref|YP_007434426.1| - 0.11 13.0 0.1 1.2 9.7 0.0 2.3 1 1 1 2 2 2 0 Bacterial toxin 33 Nop PF01798.18 gi|449067345|ref|YP_007434427.1| - 3.9e-75 252.3 0.0 9.6e-75 251.0 0.0 1.6 2 0 0 2 2 2 1 snoRNA binding domain, fibrillarin Mt_ATP-synt_B PF05405.14 gi|449067345|ref|YP_007434427.1| - 0.1 12.2 1.3 0.17 11.5 0.3 1.8 2 0 0 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Peptidase_S49_N PF08496.10 gi|449067345|ref|YP_007434427.1| - 0.54 10.3 6.0 0.91 9.6 6.0 1.4 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Ribosomal_S30 PF04758.14 gi|449067346|ref|YP_007434428.1| - 2.5e-14 53.2 4.4 3e-14 52.9 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Sas10 PF09368.10 gi|449067346|ref|YP_007434428.1| - 0.035 14.6 5.9 0.061 13.8 5.4 1.6 1 1 1 2 2 2 0 Sas10 C-terminal domain Asparaginase PF00710.20 gi|449067347|ref|YP_007434429.1| - 1.3e-59 201.0 0.0 1.7e-59 200.6 0.0 1.2 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|449067347|ref|YP_007434429.1| - 9e-34 116.1 0.0 4.1e-32 110.8 0.0 2.3 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|449067347|ref|YP_007434429.1| - 5.8e-20 70.3 7.0 1.2e-19 69.4 7.0 1.5 1 0 0 1 1 1 1 GatD N-terminal domain DUF2187 PF09953.9 gi|449067347|ref|YP_007434429.1| - 0.026 14.5 0.2 0.078 13.0 0.2 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) GatB_N PF02934.15 gi|449067348|ref|YP_007434430.1| - 5.5e-72 242.4 0.1 7.2e-72 242.0 0.1 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|449067348|ref|YP_007434430.1| - 6.2e-21 74.8 5.6 6.2e-21 74.8 5.6 2.3 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|449067348|ref|YP_007434430.1| - 4.7e-11 42.8 2.5 9.5e-11 41.8 0.1 2.6 3 0 0 3 3 3 1 GAD domain YqeY PF09424.10 gi|449067348|ref|YP_007434430.1| - 0.005 16.9 0.7 0.012 15.6 0.7 1.7 1 0 0 1 1 1 1 Yqey-like protein ATP-cone PF03477.16 gi|449067348|ref|YP_007434430.1| - 4.4 7.9 7.2 0.62 10.7 0.8 2.9 3 1 0 3 3 3 0 ATP cone domain DUF483 PF04467.12 gi|449067350|ref|YP_007434432.1| - 0.00042 20.3 0.2 0.0006 19.8 0.1 1.4 1 1 1 2 2 2 1 Protein of unknown function (DUF483) UPF0175 PF03683.13 gi|449067350|ref|YP_007434432.1| - 0.007 16.1 0.0 0.021 14.5 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) HTH_3 PF01381.22 gi|449067350|ref|YP_007434432.1| - 0.016 15.2 0.5 0.026 14.6 0.5 1.3 1 0 0 1 1 1 0 Helix-turn-helix YukD PF08817.10 gi|449067350|ref|YP_007434432.1| - 0.033 14.9 0.0 0.14 12.9 0.0 1.8 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein YukD Cro PF09048.10 gi|449067350|ref|YP_007434432.1| - 0.035 14.1 0.0 0.088 12.9 0.0 1.7 1 1 0 1 1 1 0 Cro HTH_23 PF13384.6 gi|449067350|ref|YP_007434432.1| - 0.08 12.8 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Ribonuc_red_lgC PF02867.15 gi|449067351|ref|YP_007434433.1| - 9.9e-183 608.4 0.0 1.5e-182 607.9 0.0 1.3 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|449067351|ref|YP_007434433.1| - 1.8e-28 98.4 0.2 4.2e-28 97.2 0.2 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|449067351|ref|YP_007434433.1| - 3.5e-06 27.5 0.3 1.4e-05 25.6 0.1 2.2 2 0 0 2 2 2 1 ATP cone domain PGK PF00162.19 gi|449067353|ref|YP_007434435.1| - 1.2e-101 340.4 0.2 1.4e-101 340.2 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|449067354|ref|YP_007434436.1| - 2.4e-17 63.0 0.2 3.5e-17 62.4 0.2 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|449067354|ref|YP_007434436.1| - 2.5e-12 47.0 0.2 5.9e-12 45.8 0.1 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|449067354|ref|YP_007434436.1| - 2.4e-07 31.0 0.7 2.5e-05 24.6 0.1 3.0 3 0 0 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|449067354|ref|YP_007434436.1| - 0.0013 18.2 0.1 0.046 13.1 0.1 2.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|449067354|ref|YP_007434436.1| - 0.013 16.0 0.0 0.035 14.5 0.0 1.8 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|449067354|ref|YP_007434436.1| - 0.017 15.9 0.0 0.042 14.7 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|449067354|ref|YP_007434436.1| - 0.028 14.0 0.2 0.31 10.6 0.1 2.5 2 1 1 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain PglD_N PF17836.1 gi|449067354|ref|YP_007434436.1| - 0.035 14.7 0.4 0.16 12.6 0.1 2.2 2 0 0 2 2 2 0 PglD N-terminal domain NAD_binding_3 PF03447.16 gi|449067354|ref|YP_007434436.1| - 0.16 12.6 0.0 0.64 10.7 0.0 2.1 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Usp PF00582.26 gi|449067355|ref|YP_007434437.1| - 2.7e-21 76.6 0.3 1.1e-18 68.0 0.3 2.0 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|449067355|ref|YP_007434437.1| - 0.009 15.9 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Peptidase_C71 PF12386.8 gi|449067355|ref|YP_007434437.1| - 0.031 13.9 0.0 0.038 13.6 0.0 1.2 1 0 0 1 1 1 0 Pseudomurein endo-isopeptidase Pei EF-G-binding_N PF07299.11 gi|449067355|ref|YP_007434437.1| - 0.1 13.1 0.2 0.17 12.5 0.2 1.3 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal SHMT PF00464.19 gi|449067356|ref|YP_007434438.1| - 8.8e-65 218.8 0.0 1.2e-64 218.4 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|449067356|ref|YP_007434438.1| - 8e-09 35.1 0.0 3.7e-08 32.9 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|449067356|ref|YP_007434438.1| - 2.7e-08 33.4 0.0 4.3e-08 32.8 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|449067356|ref|YP_007434438.1| - 0.00081 18.5 0.0 0.0014 17.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|449067356|ref|YP_007434438.1| - 0.0014 17.7 0.0 0.0036 16.4 0.0 1.8 2 0 0 2 2 2 1 L-seryl-tRNA selenium transferase DegT_DnrJ_EryC1 PF01041.17 gi|449067356|ref|YP_007434438.1| - 0.026 13.8 0.0 0.064 12.6 0.0 1.7 2 1 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|449067356|ref|YP_007434438.1| - 0.028 13.0 0.0 0.038 12.5 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme XTBD PF11952.8 gi|449067356|ref|YP_007434438.1| - 0.046 13.5 1.1 1.7 8.5 0.0 2.9 3 0 0 3 3 3 0 XRN-Two Binding Domain, XTBD CheD PF03975.13 gi|449067356|ref|YP_007434438.1| - 0.11 12.6 0.3 0.54 10.4 0.0 2.2 2 1 0 2 2 2 0 CheD chemotactic sensory transduction MRPL52 PF18699.1 gi|449067356|ref|YP_007434438.1| - 0.31 11.3 3.4 3.4 7.9 0.6 2.8 3 0 0 3 3 3 0 Mitoribosomal protein mL52 DUF919 PF06034.11 gi|449067356|ref|YP_007434438.1| - 1.9 8.4 6.4 5 7.0 0.3 3.2 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HMG-CoA_red PF00368.18 gi|449067357|ref|YP_007434439.1| - 5.6e-127 423.7 1.0 6.5e-127 423.5 1.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase SAC3 PF12209.8 gi|449067357|ref|YP_007434439.1| - 0.17 12.1 0.1 0.5 10.6 0.1 1.8 1 0 0 1 1 1 0 Leucine permease transcriptional regulator helical domain OB_aCoA_assoc PF01796.17 gi|449067358|ref|YP_007434440.1| - 4.8e-17 61.7 0.1 7e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|449067358|ref|YP_007434440.1| - 3.4e-05 23.6 0.0 5.1e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|449067358|ref|YP_007434440.1| - 0.011 15.5 0.2 0.014 15.0 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF2039 PF10217.9 gi|449067358|ref|YP_007434440.1| - 0.018 15.4 0.3 0.028 14.7 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Desulfoferrod_N PF06397.12 gi|449067358|ref|YP_007434440.1| - 0.039 13.6 3.8 2.5 7.8 0.1 2.4 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|449067358|ref|YP_007434440.1| - 0.04 14.0 1.4 0.12 12.6 1.4 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|449067358|ref|YP_007434440.1| - 0.088 12.5 1.2 0.85 9.4 0.1 2.6 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RecR PF02132.15 gi|449067358|ref|YP_007434440.1| - 0.14 11.7 2.4 0.48 10.0 2.5 1.8 1 1 1 2 2 2 0 RecR protein zinc_ribbon_2 PF13240.6 gi|449067358|ref|YP_007434440.1| - 2.2 8.1 6.1 5 7.0 6.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Thiolase_N PF00108.23 gi|449067359|ref|YP_007434441.1| - 1e-05 25.0 0.0 1.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|449067359|ref|YP_007434441.1| - 0.0001 22.1 0.0 0.0055 16.5 0.0 2.4 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.10 gi|449067360|ref|YP_007434442.1| - 2.6e-11 43.5 0.0 2.6e-10 40.3 0.0 2.6 4 0 0 4 4 4 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_N PF01154.17 gi|449067360|ref|YP_007434442.1| - 1.1e-05 25.4 0.1 1.6e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|449067360|ref|YP_007434442.1| - 0.00015 21.5 0.3 0.00036 20.3 0.2 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|449067360|ref|YP_007434442.1| - 0.00047 19.9 0.1 0.034 13.8 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|449067360|ref|YP_007434442.1| - 0.11 11.8 0.4 0.16 11.3 0.4 1.1 1 0 0 1 1 1 0 Thiolase, N-terminal domain AdoMet_dc PF02675.15 gi|449067361|ref|YP_007434443.1| - 4.4e-31 107.3 0.0 4.9e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PapC_N PF13954.6 gi|449067362|ref|YP_007434444.1| - 0.0011 19.0 0.1 0.0022 18.0 0.1 1.5 1 0 0 1 1 1 1 PapC N-terminal domain AAA_11 PF13086.6 gi|449067363|ref|YP_007434445.1| - 0.029 14.2 3.2 0.034 13.9 3.2 1.2 1 0 0 1 1 1 0 AAA domain HhH-GPD PF00730.25 gi|449067364|ref|YP_007434446.1| - 0.0026 18.2 0.0 0.006 17.0 0.0 1.6 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein 2-Hacid_dh_C PF02826.19 gi|449067365|ref|YP_007434447.1| - 5.2e-53 179.0 0.2 1e-52 178.1 0.1 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|449067365|ref|YP_007434447.1| - 3.7e-34 117.3 0.7 4.1e-34 117.1 0.7 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|449067365|ref|YP_007434447.1| - 1.4e-07 31.7 0.8 1.4e-07 31.7 0.8 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|449067365|ref|YP_007434447.1| - 3.9e-06 27.1 0.7 1.1e-05 25.6 0.2 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|449067365|ref|YP_007434447.1| - 0.00031 20.1 1.1 0.00031 20.1 1.1 1.9 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|449067365|ref|YP_007434447.1| - 0.002 18.0 0.2 0.0054 16.6 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|449067365|ref|YP_007434447.1| - 0.0026 17.4 0.1 0.006 16.2 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Peripla_BP_2 PF01497.18 gi|449067365|ref|YP_007434447.1| - 0.0099 15.5 0.0 1.1 8.7 0.0 3.0 2 1 1 3 3 3 1 Periplasmic binding protein PrpR_N PF06506.11 gi|449067365|ref|YP_007434447.1| - 0.023 14.3 1.0 0.55 9.8 0.0 2.9 2 1 1 3 3 3 0 Propionate catabolism activator Shikimate_DH PF01488.20 gi|449067365|ref|YP_007434447.1| - 0.06 13.4 1.0 0.32 11.1 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.9 gi|449067365|ref|YP_007434447.1| - 0.1 12.4 0.3 0.26 11.1 0.0 1.8 2 0 0 2 2 2 0 Rossmann-like domain TSP_C PF05735.12 gi|449067365|ref|YP_007434447.1| - 0.12 12.3 0.4 2.9 7.8 0.0 2.1 2 0 0 2 2 2 0 Thrombospondin C-terminal region PTS_IIB PF02302.17 gi|449067365|ref|YP_007434447.1| - 0.13 13.0 6.8 0.67 10.7 0.8 3.4 3 1 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit UDPG_MGDP_dh_N PF03721.14 gi|449067365|ref|YP_007434447.1| - 0.14 11.7 3.4 0.23 11.0 0.5 2.6 2 2 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Aminotran_5 PF00266.19 gi|449067366|ref|YP_007434448.1| - 1.6e-27 96.4 0.0 2e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|449067366|ref|YP_007434448.1| - 5.2e-07 29.2 0.0 7.8e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|449067366|ref|YP_007434448.1| - 9.2e-06 24.4 0.0 1.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|449067366|ref|YP_007434448.1| - 0.00041 19.7 0.0 0.00055 19.3 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase DUF684 PF05075.14 gi|449067366|ref|YP_007434448.1| - 0.017 14.2 0.1 0.038 13.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF684) MCPVI PF02993.14 gi|449067366|ref|YP_007434448.1| - 0.019 14.8 0.0 0.91 9.3 0.0 2.2 1 1 1 2 2 2 0 Minor capsid protein VI Fer2_BFD PF04324.15 gi|449067366|ref|YP_007434448.1| - 0.039 14.3 0.0 21 5.6 0.1 3.0 4 0 0 4 4 4 0 BFD-like [2Fe-2S] binding domain DUF521 PF04412.13 gi|449067366|ref|YP_007434448.1| - 0.2 10.4 0.0 0.28 9.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) RNA_pol_Rpb6 PF01192.22 gi|449067367|ref|YP_007434449.1| - 1.2e-14 53.9 0.1 1.7e-14 53.5 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Pox_RNA_Pol_19 PF05320.12 gi|449067367|ref|YP_007434449.1| - 0.00071 19.6 0.5 0.00071 19.6 0.5 1.0 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit DDE_Tnp_1_4 PF13701.6 gi|449067367|ref|YP_007434449.1| - 0.0099 14.2 0.0 0.011 14.1 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain group 1 Topoisom_bac PF01131.20 gi|449067368|ref|YP_007434450.1| - 1.3e-106 357.1 0.2 1.8e-106 356.6 0.2 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|449067368|ref|YP_007434450.1| - 6.6e-17 61.6 2.3 9.5e-17 61.1 0.0 2.5 3 1 0 3 3 3 1 Toprim domain Tmemb_cc2 PF10267.9 gi|449067368|ref|YP_007434450.1| - 0.13 11.4 2.8 0.21 10.7 2.8 1.3 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein AAA PF00004.29 gi|449067369|ref|YP_007434451.1| - 1.5e-41 141.9 0.1 1.7e-40 138.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|449067369|ref|YP_007434451.1| - 5.8e-11 42.0 0.1 1.7e-10 40.6 0.1 1.8 1 0 0 1 1 1 1 AAA+ lid domain MIT PF04212.18 gi|449067369|ref|YP_007434451.1| - 1.8e-10 40.7 5.6 5e-10 39.3 5.6 1.8 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain RuvB_N PF05496.12 gi|449067369|ref|YP_007434451.1| - 3.6e-07 30.1 0.0 4.7e-06 26.4 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|449067369|ref|YP_007434451.1| - 3.8e-07 30.4 0.0 9.3e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|449067369|ref|YP_007434451.1| - 6e-07 30.0 0.0 0.00085 19.7 0.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain Vps4_C PF09336.10 gi|449067369|ref|YP_007434451.1| - 6e-07 29.4 1.1 2.6e-06 27.3 0.2 2.5 2 1 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|449067369|ref|YP_007434451.1| - 6.9e-07 29.4 0.1 4.9e-06 26.6 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449067369|ref|YP_007434451.1| - 6e-06 26.6 0.0 0.00075 19.8 0.0 3.0 2 1 0 2 2 1 1 AAA domain AAA_5 PF07728.14 gi|449067369|ref|YP_007434451.1| - 8.4e-05 22.6 0.2 0.0027 17.7 0.1 3.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|449067369|ref|YP_007434451.1| - 0.00017 21.4 0.0 0.0011 18.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|449067369|ref|YP_007434451.1| - 0.00071 19.2 0.0 0.076 12.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|449067369|ref|YP_007434451.1| - 0.00071 18.9 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain Viral_helicase1 PF01443.18 gi|449067369|ref|YP_007434451.1| - 0.00072 19.4 0.0 0.0028 17.4 0.0 1.8 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 gi|449067369|ref|YP_007434451.1| - 0.00083 19.3 9.2 0.26 11.2 0.1 3.8 3 2 1 4 4 4 2 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|449067369|ref|YP_007434451.1| - 0.0015 18.9 0.2 0.014 15.8 0.0 2.7 2 2 1 3 3 2 1 RNA helicase AAA_18 PF13238.6 gi|449067369|ref|YP_007434451.1| - 0.0031 18.1 0.1 0.021 15.4 0.0 2.6 1 1 1 2 2 1 1 AAA domain TPR_11 PF13414.6 gi|449067369|ref|YP_007434451.1| - 0.0039 16.8 0.2 0.01 15.5 0.2 1.7 1 0 0 1 1 1 1 TPR repeat ResIII PF04851.15 gi|449067369|ref|YP_007434451.1| - 0.0053 16.8 0.0 0.054 13.5 0.0 2.3 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|449067369|ref|YP_007434451.1| - 0.0065 16.0 0.0 0.037 13.5 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|449067369|ref|YP_007434451.1| - 0.0065 15.9 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|449067369|ref|YP_007434451.1| - 0.0072 16.0 0.0 0.11 12.2 0.0 2.4 1 1 0 1 1 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|449067369|ref|YP_007434451.1| - 0.0083 15.6 0.2 3.1 7.2 0.0 3.4 3 1 1 4 4 4 1 Bacterial TniB protein Fe_hyd_SSU PF02256.17 gi|449067369|ref|YP_007434451.1| - 0.02 15.0 0.1 0.056 13.5 0.1 1.8 1 0 0 1 1 1 0 Iron hydrogenase small subunit Zeta_toxin PF06414.12 gi|449067369|ref|YP_007434451.1| - 0.025 13.9 0.0 0.092 12.0 0.0 2.0 2 0 0 2 2 1 0 Zeta toxin Parvo_NS1 PF01057.17 gi|449067369|ref|YP_007434451.1| - 0.028 13.5 0.0 0.07 12.2 0.0 1.6 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|449067369|ref|YP_007434451.1| - 0.031 14.2 0.0 0.37 10.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Casc1_N PF15927.5 gi|449067369|ref|YP_007434451.1| - 0.037 13.7 0.4 0.11 12.2 0.1 1.9 2 0 0 2 2 2 0 Cancer susceptibility candidate 1 N-terminus IstB_IS21 PF01695.17 gi|449067369|ref|YP_007434451.1| - 0.038 13.7 0.0 0.084 12.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2075 PF09848.9 gi|449067369|ref|YP_007434451.1| - 0.039 13.2 0.0 0.083 12.1 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|449067369|ref|YP_007434451.1| - 0.047 13.6 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Use1 PF09753.9 gi|449067369|ref|YP_007434451.1| - 0.047 13.4 1.9 0.6 9.8 0.1 2.8 2 1 1 3 3 3 0 Membrane fusion protein Use1 Bac_DnaA PF00308.18 gi|449067369|ref|YP_007434451.1| - 0.051 13.4 0.7 0.087 12.6 0.0 1.8 2 0 0 2 2 1 0 Bacterial dnaA protein SKI PF01202.22 gi|449067369|ref|YP_007434451.1| - 0.059 13.5 0.1 0.17 12.0 0.0 1.8 2 0 0 2 2 1 0 Shikimate kinase NB-ARC PF00931.22 gi|449067369|ref|YP_007434451.1| - 0.06 12.5 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.6 gi|449067369|ref|YP_007434451.1| - 0.061 13.7 0.1 0.34 11.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|449067369|ref|YP_007434451.1| - 0.07 13.6 0.0 0.48 10.9 0.0 2.1 2 1 0 2 2 2 0 ABC transporter DUF1912 PF08930.10 gi|449067369|ref|YP_007434451.1| - 0.072 13.2 2.7 0.9 9.7 0.3 3.1 3 0 0 3 3 2 0 Domain of unknown function (DUF1912) AAA_33 PF13671.6 gi|449067369|ref|YP_007434451.1| - 0.073 13.2 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|449067369|ref|YP_007434451.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TPR_8 PF13181.6 gi|449067369|ref|YP_007434451.1| - 0.14 12.4 0.5 0.98 9.8 0.3 2.6 2 1 0 2 2 1 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|449067369|ref|YP_007434451.1| - 0.15 12.0 0.5 0.47 10.4 0.2 2.0 2 0 0 2 2 1 0 Tetratricopeptide repeat T3SchapCesA PF11439.8 gi|449067369|ref|YP_007434451.1| - 0.24 11.6 2.9 17 5.7 0.1 2.6 2 1 0 2 2 2 0 Type III secretion system filament chaperone CesA Gp-FAR-1 PF05823.12 gi|449067369|ref|YP_007434451.1| - 0.25 11.7 6.3 0.53 10.6 0.4 3.5 4 0 0 4 4 4 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) ATPase PF06745.13 gi|449067369|ref|YP_007434451.1| - 1.9 7.8 5.3 1.5 8.1 0.0 3.0 3 1 1 4 4 4 0 KaiC Snf7 PF03357.21 gi|449067370|ref|YP_007434452.1| - 2.7e-05 23.8 4.8 4.8e-05 23.0 4.6 1.6 1 1 0 1 1 1 1 Snf7 MarR_2 PF12802.7 gi|449067370|ref|YP_007434452.1| - 0.00071 19.4 0.0 0.0018 18.1 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449067370|ref|YP_007434452.1| - 0.0011 18.8 0.1 0.0093 15.8 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF3231 PF11553.8 gi|449067370|ref|YP_007434452.1| - 0.0012 18.5 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3231) MarR PF01047.22 gi|449067370|ref|YP_007434452.1| - 0.0014 18.5 0.0 0.0037 17.2 0.0 1.7 1 0 0 1 1 1 1 MarR family RPA_C PF08784.11 gi|449067370|ref|YP_007434452.1| - 0.0016 19.1 0.0 0.0033 18.1 0.0 1.6 1 1 0 1 1 1 1 Replication protein A C terminal HTH_36 PF13730.6 gi|449067370|ref|YP_007434452.1| - 0.0019 18.1 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|449067370|ref|YP_007434452.1| - 0.0025 18.3 0.2 0.86 10.1 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.21 gi|449067370|ref|YP_007434452.1| - 0.017 14.7 0.0 0.074 12.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Phage_GP20 PF06810.11 gi|449067370|ref|YP_007434452.1| - 0.04 13.7 0.2 0.04 13.7 0.2 2.3 3 0 0 3 3 3 0 Phage minor structural protein GP20 HTH_11 PF08279.12 gi|449067370|ref|YP_007434452.1| - 0.042 13.8 0.2 0.18 11.8 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_47 PF16221.5 gi|449067370|ref|YP_007434452.1| - 0.053 13.1 0.1 0.24 11.0 0.0 2.1 2 0 0 2 2 2 0 winged helix-turn-helix HTH_29 PF13551.6 gi|449067370|ref|YP_007434452.1| - 0.063 13.3 0.0 0.23 11.5 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|449067370|ref|YP_007434452.1| - 0.065 13.6 0.0 0.45 10.9 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator DUF2250 PF10007.9 gi|449067370|ref|YP_007434452.1| - 0.1 12.8 0.6 0.38 10.9 0.0 2.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4795 PF16043.5 gi|449067370|ref|YP_007434452.1| - 0.15 11.6 3.6 0.082 12.5 0.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Acetyltransf_11 PF13720.6 gi|449067370|ref|YP_007434452.1| - 0.38 11.2 3.1 0.76 10.3 0.0 2.7 3 0 0 3 3 3 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CdvA PF18822.1 gi|449067371|ref|YP_007434453.1| - 4.2e-39 133.2 9.4 5.7e-39 132.7 9.4 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Syntaxin-6_N PF09177.11 gi|449067371|ref|YP_007434453.1| - 0.054 14.1 2.6 0.17 12.4 1.2 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal NPV_P10 PF05531.12 gi|449067371|ref|YP_007434453.1| - 0.12 12.8 1.1 10 6.6 0.1 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein YojJ PF10372.9 gi|449067371|ref|YP_007434453.1| - 0.16 12.1 0.9 11 6.2 0.1 3.0 3 1 1 4 4 4 0 Bacterial membrane-spanning protein N-terminus PRC PF05239.16 gi|449067371|ref|YP_007434453.1| - 0.34 11.0 4.1 0.62 10.2 4.1 1.4 1 0 0 1 1 1 0 PRC-barrel domain BLOC1_2 PF10046.9 gi|449067371|ref|YP_007434453.1| - 0.75 10.1 5.0 18 5.7 0.1 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF883 PF05957.13 gi|449067371|ref|YP_007434453.1| - 1.1 9.9 3.4 0.7 10.5 1.6 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) ZapB PF06005.12 gi|449067371|ref|YP_007434453.1| - 9.8 6.7 8.9 9.3 6.8 3.1 2.6 2 1 0 2 2 2 0 Cell division protein ZapB Oxidored_q5_N PF01059.17 gi|449067372|ref|YP_007434454.1| - 0.0011 19.1 2.6 0.0012 18.9 2.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Phlebovirus_G2 PF07245.11 gi|449067372|ref|YP_007434454.1| - 0.0037 15.8 1.2 0.0037 15.8 1.2 1.4 1 1 1 2 2 2 1 Phlebovirus glycoprotein G2 YrhC PF14143.6 gi|449067372|ref|YP_007434454.1| - 0.046 13.8 1.0 0.046 13.8 1.0 1.9 2 0 0 2 2 2 0 YrhC-like protein Phlebovirus_G1 PF07243.11 gi|449067372|ref|YP_007434454.1| - 0.6 8.4 2.4 0.66 8.3 2.4 1.1 1 0 0 1 1 1 0 Phlebovirus glycoprotein G1 Fig1 PF12351.8 gi|449067372|ref|YP_007434454.1| - 0.69 9.8 5.9 0.76 9.7 5.9 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF2929 PF11151.8 gi|449067372|ref|YP_007434454.1| - 2.2 8.6 11.8 2.3 8.5 0.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) Tetraspanin PF00335.20 gi|449067372|ref|YP_007434454.1| - 9.1 5.9 7.7 11 5.7 7.7 1.1 1 0 0 1 1 1 0 Tetraspanin family Enolase_C PF00113.22 gi|449067373|ref|YP_007434455.1| - 6.2e-94 314.6 0.1 8.3e-94 314.1 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|449067373|ref|YP_007434455.1| - 1.6e-34 118.9 0.2 2.8e-34 118.1 0.2 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|449067373|ref|YP_007434455.1| - 1e-06 28.5 0.0 1.8e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF2070 PF09843.9 gi|449067374|ref|YP_007434456.1| - 6.8 4.9 10.6 7.6 4.7 10.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Zn-ribbon_8 PF09723.10 gi|449067375|ref|YP_007434457.1| - 6.4e-05 23.0 0.8 0.41 10.8 0.0 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|449067375|ref|YP_007434457.1| - 0.0019 18.1 0.3 0.0038 17.2 0.3 1.5 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|449067375|ref|YP_007434457.1| - 0.0044 17.0 0.1 0.009 16.0 0.1 1.5 1 1 0 1 1 1 1 Double zinc ribbon CpXC PF14353.6 gi|449067375|ref|YP_007434457.1| - 0.0059 16.6 0.1 0.0088 16.1 0.1 1.2 1 0 0 1 1 1 1 CpXC protein DUF4379 PF14311.6 gi|449067375|ref|YP_007434457.1| - 0.0081 16.5 2.0 0.032 14.6 0.2 2.1 2 0 0 2 2 2 1 Probable Zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|449067375|ref|YP_007434457.1| - 0.009 15.9 0.4 4.1 7.4 0.1 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|449067375|ref|YP_007434457.1| - 0.029 13.8 5.2 0.15 11.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|449067375|ref|YP_007434457.1| - 0.041 13.7 4.8 0.19 11.6 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.11 gi|449067375|ref|YP_007434457.1| - 0.044 13.5 0.4 7 6.4 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.6 gi|449067375|ref|YP_007434457.1| - 0.047 14.4 0.8 1.9 9.2 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|449067375|ref|YP_007434457.1| - 0.054 13.2 7.5 0.31 10.8 0.9 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|449067375|ref|YP_007434457.1| - 0.063 13.1 1.0 0.48 10.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|449067375|ref|YP_007434457.1| - 0.093 12.8 0.1 8.2 6.5 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain Nudix_N_2 PF14803.6 gi|449067375|ref|YP_007434457.1| - 0.1 12.5 1.1 9.1 6.3 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|449067375|ref|YP_007434457.1| - 0.16 11.7 1.8 1.9 8.2 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|449067375|ref|YP_007434457.1| - 0.18 11.9 4.5 3 8.0 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.12 gi|449067375|ref|YP_007434457.1| - 0.21 11.6 2.4 4.1 7.5 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-IS66 PF13005.7 gi|449067375|ref|YP_007434457.1| - 0.28 11.6 4.1 0.34 11.3 1.5 2.4 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|449067375|ref|YP_007434457.1| - 0.3 11.0 6.1 1.8 8.6 0.2 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|449067375|ref|YP_007434457.1| - 0.64 9.8 5.1 3.6 7.4 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-3CxxC_2 PF17180.4 gi|449067375|ref|YP_007434457.1| - 0.86 10.4 5.0 0.92 10.3 2.3 2.3 2 1 0 2 2 2 0 Zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|449067375|ref|YP_007434457.1| - 1.8 8.2 6.4 5.5 6.6 0.6 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding Peptidase_S24 PF00717.23 gi|449067376|ref|YP_007434458.1| - 0.00038 20.3 0.3 0.00055 19.8 0.3 1.2 1 0 0 1 1 1 1 Peptidase S24-like GDC-P PF02347.16 gi|449067377|ref|YP_007434459.1| - 4.1e-12 45.7 0.0 1.1e-11 44.2 0.0 1.6 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|449067377|ref|YP_007434459.1| - 4.3e-07 29.2 0.1 7e-07 28.5 0.1 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|449067377|ref|YP_007434459.1| - 0.025 13.8 0.1 0.038 13.3 0.1 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase GDC-P PF02347.16 gi|449067378|ref|YP_007434460.1| - 4.6e-111 371.7 0.0 6.1e-111 371.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein GCV_T PF01571.21 gi|449067379|ref|YP_007434461.1| - 2.8e-63 213.7 0.0 3.3e-63 213.5 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|449067379|ref|YP_007434461.1| - 6.1e-18 64.5 0.0 1.1e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GCV_H PF01597.19 gi|449067380|ref|YP_007434462.1| - 1.3e-42 144.5 0.5 1.5e-42 144.3 0.5 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|449067380|ref|YP_007434462.1| - 0.00082 19.2 0.3 0.0018 18.1 0.1 1.6 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|449067380|ref|YP_007434462.1| - 0.0022 17.9 0.6 0.005 16.8 0.2 1.8 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain PAC2 PF09754.9 gi|449067381|ref|YP_007434463.1| - 1.5e-36 126.4 0.0 1.8e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PIH1_CS PF18201.1 gi|449067382|ref|YP_007434464.1| - 0.03 14.7 0.0 0.054 13.9 0.0 1.6 1 1 1 2 2 2 0 PIH1 CS-like domain Orthopox_B11R PF07033.11 gi|449067382|ref|YP_007434464.1| - 0.076 12.8 2.6 0.16 11.7 2.6 1.5 1 0 0 1 1 1 0 Orthopoxvirus B11R protein DUF1801 PF08818.11 gi|449067382|ref|YP_007434464.1| - 0.11 13.1 0.3 0.22 12.0 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DU1801) DUF883 PF05957.13 gi|449067382|ref|YP_007434464.1| - 0.12 13.0 0.3 0.19 12.3 0.2 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) MazE_antitoxin PF04014.18 gi|449067383|ref|YP_007434465.1| - 1.1e-08 34.8 0.2 3.7e-08 33.1 0.2 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin RIF5_SNase_1 PF18187.1 gi|449067383|ref|YP_007434465.1| - 0.0021 17.9 0.0 0.17 11.6 0.0 2.3 2 0 0 2 2 2 2 TbRIF5 SNase domain 1 ABC_tran PF00005.27 gi|449067384|ref|YP_007434466.1| - 4.6e-23 82.2 0.2 6.3e-23 81.8 0.2 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067384|ref|YP_007434466.1| - 1.7e-07 31.4 0.5 0.012 15.4 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449067384|ref|YP_007434466.1| - 5e-07 29.4 0.8 1.9e-06 27.5 0.8 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|449067384|ref|YP_007434466.1| - 0.0029 17.4 0.1 0.0039 16.9 0.1 1.2 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|449067384|ref|YP_007434466.1| - 0.011 15.7 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|449067384|ref|YP_007434466.1| - 0.012 15.3 0.2 0.029 14.1 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|449067384|ref|YP_007434466.1| - 0.017 13.8 0.1 0.036 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|449067384|ref|YP_007434466.1| - 0.017 15.5 0.2 0.043 14.2 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|449067384|ref|YP_007434466.1| - 0.039 14.5 0.3 0.053 14.0 0.3 1.6 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|449067384|ref|YP_007434466.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.6 gi|449067384|ref|YP_007434466.1| - 0.071 12.7 0.0 0.1 12.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|449067384|ref|YP_007434466.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.17 gi|449067385|ref|YP_007434467.1| - 4.1e-63 213.0 0.0 5.2e-63 212.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF4295 PF14128.6 gi|449067385|ref|YP_007434467.1| - 0.068 13.0 0.0 0.25 11.2 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4295) UPF0051 PF01458.17 gi|449067386|ref|YP_007434468.1| - 4e-34 118.2 0.5 5.5e-34 117.8 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) RHH_1 PF01402.21 gi|449067387|ref|YP_007434469.1| - 2.3e-10 40.0 0.7 2.5e-10 39.9 0.7 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|449067387|ref|YP_007434469.1| - 3.7e-05 23.6 1.1 7e-05 22.7 1.1 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|449067387|ref|YP_007434469.1| - 0.0089 15.9 1.3 0.026 14.4 1.3 1.7 1 1 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB ADH_N PF08240.12 gi|449067388|ref|YP_007434470.1| - 1.3e-27 95.8 0.9 2.1e-27 95.2 0.2 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449067388|ref|YP_007434470.1| - 3.1e-22 79.0 0.2 6.5e-22 77.9 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449067388|ref|YP_007434470.1| - 5.5e-08 33.9 0.0 1.4e-07 32.6 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase YjeF_N PF03853.15 gi|449067388|ref|YP_007434470.1| - 0.0071 16.2 0.1 0.01 15.7 0.1 1.2 1 0 0 1 1 1 1 YjeF-related protein N-terminus SIS_2 PF13580.6 gi|449067388|ref|YP_007434470.1| - 0.018 15.1 0.1 0.14 12.2 0.1 2.4 3 0 0 3 3 3 0 SIS domain ELFV_dehydrog PF00208.21 gi|449067388|ref|YP_007434470.1| - 0.059 13.1 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.20 gi|449067388|ref|YP_007434470.1| - 0.068 13.3 0.7 0.96 9.6 0.7 2.4 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Rhodanese PF00581.20 gi|449067388|ref|YP_007434470.1| - 0.1 13.1 0.0 5.4 7.6 0.0 2.6 3 0 0 3 3 3 0 Rhodanese-like domain tRNA-synt_1d PF00750.19 gi|449067389|ref|YP_007434471.1| - 5e-37 127.6 2.1 5.5e-35 120.9 2.1 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|449067389|ref|YP_007434471.1| - 5.5e-25 87.9 0.1 1.5e-24 86.4 0.0 1.8 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1e PF01406.19 gi|449067389|ref|YP_007434471.1| - 0.0004 19.8 0.3 0.37 10.1 0.1 2.8 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|449067389|ref|YP_007434471.1| - 0.0049 15.7 0.3 0.1 11.3 0.1 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|449067389|ref|YP_007434471.1| - 0.0068 14.7 0.4 0.022 13.0 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Cytochrom_B562 PF07361.11 gi|449067389|ref|YP_007434471.1| - 0.076 13.7 0.5 0.33 11.6 0.1 2.2 2 0 0 2 2 2 0 Cytochrome b562 DUF4423 PF14394.6 gi|449067392|ref|YP_007434474.1| - 0.015 15.0 0.3 0.019 14.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TBPIP PF07106.13 gi|449067392|ref|YP_007434474.1| - 0.016 15.1 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain DpnI_C PF17726.1 gi|449067392|ref|YP_007434474.1| - 0.02 15.0 0.0 0.1 12.8 0.0 1.8 1 1 1 2 2 2 0 Dam-replacing HTH domain HTH_9 PF08221.11 gi|449067392|ref|YP_007434474.1| - 0.035 14.2 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Cpn60_TCP1 PF00118.24 gi|449067394|ref|YP_007434476.1| - 2.5e-173 577.2 17.7 2.9e-173 577.0 17.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Alba PF01918.21 gi|449067394|ref|YP_007434476.1| - 0.011 15.6 0.1 2.2 8.2 0.0 3.3 3 0 0 3 3 3 0 Alba DZR PF12773.7 gi|449067395|ref|YP_007434477.1| - 0.00023 21.1 8.1 0.0013 18.7 1.1 2.5 2 1 0 2 2 2 2 Double zinc ribbon Cript PF10235.9 gi|449067395|ref|YP_007434477.1| - 0.0019 18.7 8.2 0.061 13.9 0.6 3.4 3 0 0 3 3 3 2 Microtubule-associated protein CRIPT zinc_ribbon_2 PF13240.6 gi|449067395|ref|YP_007434477.1| - 0.0036 17.0 4.8 0.0036 17.0 4.8 3.2 3 0 0 3 3 3 1 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|449067395|ref|YP_007434477.1| - 0.012 15.4 4.5 4.3 7.3 0.1 3.5 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS91 PF14319.6 gi|449067395|ref|YP_007434477.1| - 0.049 13.7 3.8 0.13 12.3 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-binding domain DUF2318 PF10080.9 gi|449067395|ref|YP_007434477.1| - 0.39 10.9 7.0 0.4 10.8 1.0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) zf-FCS PF06467.14 gi|449067395|ref|YP_007434477.1| - 0.8 9.7 5.4 32 4.6 3.3 3.2 2 1 1 3 3 3 0 MYM-type Zinc finger with FCS sequence motif zinc_ribbon_15 PF17032.5 gi|449067395|ref|YP_007434477.1| - 0.83 10.4 14.8 0.21 12.4 6.8 2.9 2 2 0 2 2 2 0 zinc-ribbon family zf-C2HC5 PF06221.13 gi|449067395|ref|YP_007434477.1| - 3.4 7.7 6.7 4.4 7.4 0.4 2.5 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type OrfB_Zn_ribbon PF07282.11 gi|449067395|ref|YP_007434477.1| - 8.7 6.3 9.1 2.3 8.2 0.7 2.6 2 1 1 3 3 3 0 Putative transposase DNA-binding domain DUF2009 PF09418.10 gi|449067396|ref|YP_007434478.1| - 0.61 9.1 3.1 1.2 8.1 0.0 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2009) HTH_45 PF14947.6 gi|449067398|ref|YP_007434480.1| - 3.2e-05 23.8 0.4 0.00017 21.5 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|449067398|ref|YP_007434480.1| - 0.00093 19.5 0.0 0.025 14.9 0.0 2.7 2 1 1 3 3 3 1 Transcriptional regulator TrmB PF01978.19 gi|449067398|ref|YP_007434480.1| - 0.0056 16.5 0.1 0.024 14.5 0.0 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449067398|ref|YP_007434480.1| - 0.0083 16.0 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|449067398|ref|YP_007434480.1| - 0.012 15.5 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|449067398|ref|YP_007434480.1| - 0.014 15.3 0.8 4.7 7.2 0.0 2.7 3 0 0 3 3 3 0 MarR family HTH_23 PF13384.6 gi|449067398|ref|YP_007434480.1| - 0.05 13.4 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain AbiEi_4 PF13338.6 gi|449067398|ref|YP_007434480.1| - 0.073 13.2 0.1 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin PPO1_KFDV PF12143.8 gi|449067398|ref|YP_007434480.1| - 0.079 13.1 1.2 0.15 12.1 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF_B2219) NAD_kinase PF01513.21 gi|449067399|ref|YP_007434481.1| - 2.1e-52 178.1 0.0 2.3e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|449067399|ref|YP_007434481.1| - 0.00043 19.9 0.0 0.0026 17.3 0.0 2.1 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Arb2 PF09757.9 gi|449067399|ref|YP_007434481.1| - 0.085 12.0 0.1 0.19 10.8 0.0 1.6 2 0 0 2 2 2 0 Arb2 domain HTH_12 PF08461.10 gi|449067400|ref|YP_007434482.1| - 0.00089 19.2 0.3 0.0018 18.2 0.3 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|449067400|ref|YP_007434482.1| - 0.037 14.0 0.0 0.11 12.5 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix Ribosomal_S19e PF01090.19 gi|449067400|ref|YP_007434482.1| - 0.045 13.4 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e MarR PF01047.22 gi|449067400|ref|YP_007434482.1| - 0.049 13.6 0.2 0.096 12.6 0.2 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|449067400|ref|YP_007434482.1| - 0.052 13.8 0.0 0.094 12.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Replic_Relax PF13814.6 gi|449067400|ref|YP_007434482.1| - 0.088 12.9 0.1 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_11 PF08279.12 gi|449067400|ref|YP_007434482.1| - 0.13 12.2 1.0 0.59 10.1 0.1 2.4 2 0 0 2 2 2 0 HTH domain OTCace PF00185.24 gi|449067401|ref|YP_007434483.1| - 1.2e-56 191.2 0.1 1.8e-56 190.6 0.1 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|449067401|ref|YP_007434483.1| - 9.3e-45 152.3 0.1 2.4e-44 151.0 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Nre_N PF04894.12 gi|449067402|ref|YP_007434484.1| - 1e-94 317.4 0.0 1.5e-94 316.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|449067402|ref|YP_007434484.1| - 2.9e-33 114.1 0.0 5.8e-33 113.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal PHP_C PF13263.6 gi|449067403|ref|YP_007434485.1| - 9.3e-14 50.9 0.0 1.6e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|449067403|ref|YP_007434485.1| - 6.1e-06 26.6 0.0 5.4e-05 23.6 0.0 2.1 2 0 0 2 2 2 1 PHP domain Semialdhyde_dh PF01118.24 gi|449067404|ref|YP_007434486.1| - 4.1e-33 114.4 0.0 7e-33 113.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|449067404|ref|YP_007434486.1| - 3.3e-26 92.5 0.1 4.8e-26 92.0 0.1 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Ldh_1_N PF00056.23 gi|449067404|ref|YP_007434486.1| - 0.012 15.7 0.1 0.025 14.7 0.1 1.6 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 gi|449067404|ref|YP_007434486.1| - 0.016 14.8 0.2 0.034 13.8 0.1 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|449067404|ref|YP_007434486.1| - 0.03 14.4 0.0 0.054 13.6 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|449067404|ref|YP_007434486.1| - 0.031 15.0 0.1 0.19 12.5 0.0 2.3 3 0 0 3 3 3 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase AA_kinase PF00696.28 gi|449067405|ref|YP_007434487.1| - 4.4e-39 134.5 1.7 5.1e-39 134.3 0.2 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|449067405|ref|YP_007434487.1| - 0.00022 20.9 0.6 0.001 18.8 0.2 2.4 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|449067405|ref|YP_007434487.1| - 0.046 13.5 4.7 2 8.3 0.4 3.4 3 1 1 4 4 4 0 ACT domain PALP PF00291.25 gi|449067406|ref|YP_007434488.1| - 8.4e-73 245.3 0.1 1e-72 245.1 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Zn-ribbon_8 PF09723.10 gi|449067406|ref|YP_007434488.1| - 0.0059 16.7 0.1 0.0096 16.0 0.1 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|449067406|ref|YP_007434488.1| - 0.02 14.8 0.5 0.033 14.1 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_7 PF02591.15 gi|449067406|ref|YP_007434488.1| - 0.034 14.3 0.1 0.09 13.0 0.1 1.8 1 0 0 1 1 1 0 C4-type zinc ribbon domain HypA PF01155.19 gi|449067406|ref|YP_007434488.1| - 0.041 13.9 0.1 0.07 13.2 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|449067406|ref|YP_007434488.1| - 0.26 11.0 1.5 0.56 9.9 1.5 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UbiD PF01977.16 gi|449067407|ref|YP_007434489.1| - 2.3e-128 428.5 0.0 2.7e-128 428.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Snf7 PF03357.21 gi|449067409|ref|YP_007434491.1| - 0.00025 20.7 2.6 0.00037 20.1 2.6 1.5 1 1 0 1 1 1 1 Snf7 LOH1CR12 PF10158.9 gi|449067409|ref|YP_007434491.1| - 0.02 14.9 0.3 0.039 14.0 0.3 1.5 1 0 0 1 1 1 0 Tumour suppressor protein BLOC1S3 PF15753.5 gi|449067409|ref|YP_007434491.1| - 0.12 12.5 3.2 0.8 9.8 3.2 2.2 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 PPDK_N PF01326.19 gi|449067410|ref|YP_007434492.1| - 6.3e-114 380.6 1.6 9.9e-114 380.0 1.6 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|449067410|ref|YP_007434492.1| - 2.3e-82 276.4 0.0 4.3e-82 275.5 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|449067410|ref|YP_007434492.1| - 1.4e-29 101.6 0.3 4.9e-29 99.8 0.3 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain UPF0147 PF03685.13 gi|449067410|ref|YP_007434492.1| - 0.031 14.3 0.5 0.13 12.3 0.5 2.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) PEP-utilisers_N PF05524.13 gi|449067410|ref|YP_007434492.1| - 0.067 13.4 0.9 2.1 8.5 0.0 3.1 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Inos-1-P_synth PF01658.17 gi|449067411|ref|YP_007434493.1| - 1.4e-29 102.5 0.1 3.3e-29 101.3 0.0 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|449067411|ref|YP_007434493.1| - 0.0085 15.5 0.0 0.075 12.4 0.0 2.3 2 1 0 2 2 2 1 Myo-inositol-1-phosphate synthase Acylphosphatase PF00708.18 gi|449067412|ref|YP_007434494.1| - 5.8e-27 93.9 0.0 6.8e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase PALP PF00291.25 gi|449067413|ref|YP_007434495.1| - 3.8e-41 141.4 0.0 4.9e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|449067414|ref|YP_007434496.1| - 2.7e-34 118.2 0.4 3.3e-34 117.9 0.4 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|449067414|ref|YP_007434496.1| - 1.6e-05 24.5 0.3 3e-05 23.6 0.3 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|449067414|ref|YP_007434496.1| - 0.008 15.7 0.2 0.016 14.7 0.2 1.5 1 0 0 1 1 1 1 PcrB family TMP-TENI PF02581.17 gi|449067414|ref|YP_007434496.1| - 0.012 14.9 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase NMO PF03060.15 gi|449067414|ref|YP_007434496.1| - 0.015 14.7 0.1 0.052 12.9 0.1 1.8 1 1 1 2 2 2 0 Nitronate monooxygenase FMN_dh PF01070.18 gi|449067414|ref|YP_007434496.1| - 0.017 14.1 0.1 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|449067414|ref|YP_007434496.1| - 0.054 12.9 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family ThiG PF05690.14 gi|449067414|ref|YP_007434496.1| - 0.11 11.8 0.3 0.14 11.5 0.0 1.4 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|449067414|ref|YP_007434496.1| - 0.15 11.2 0.2 0.31 10.2 0.2 1.5 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Glycos_transf_3 PF00591.21 gi|449067415|ref|YP_007434497.1| - 3.6e-74 249.5 0.0 4.9e-74 249.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|449067415|ref|YP_007434497.1| - 2.9e-17 62.3 0.2 5.9e-17 61.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|449067416|ref|YP_007434498.1| - 9.7e-28 97.3 0.0 1.1e-27 97.1 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.18 gi|449067417|ref|YP_007434499.1| - 8.4e-93 310.6 0.0 1e-92 310.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|449067417|ref|YP_007434499.1| - 4.9e-23 81.9 0.0 2.4e-22 79.7 0.0 2.1 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|449067418|ref|YP_007434500.1| - 5.4e-46 156.8 0.0 5.9e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449067418|ref|YP_007434500.1| - 1.3e-11 44.7 0.0 2.1e-11 44.0 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|449067418|ref|YP_007434500.1| - 0.049 13.5 0.0 0.065 13.1 0.0 1.5 1 1 0 1 1 1 0 SNO glutamine amidotransferase family IGPS PF00218.21 gi|449067419|ref|YP_007434501.1| - 6.2e-75 251.6 0.5 7e-75 251.5 0.5 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|449067419|ref|YP_007434501.1| - 0.00013 21.5 0.4 0.0059 16.1 0.0 2.2 1 1 1 2 2 2 2 Histidine biosynthesis protein FMN_dh PF01070.18 gi|449067419|ref|YP_007434501.1| - 0.001 18.2 0.0 1 8.3 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase QRPTase_C PF01729.19 gi|449067419|ref|YP_007434501.1| - 0.065 13.0 0.1 0.56 10.0 0.0 2.0 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Aminotran_1_2 PF00155.21 gi|449067420|ref|YP_007434502.1| - 4.6e-77 259.7 0.0 5.2e-77 259.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|449067420|ref|YP_007434502.1| - 2.4e-09 37.0 0.0 5.9e-09 35.7 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|449067420|ref|YP_007434502.1| - 2e-07 30.3 0.0 5.4e-07 28.9 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|449067420|ref|YP_007434502.1| - 1.2e-05 24.1 0.0 2.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|449067420|ref|YP_007434502.1| - 0.00084 18.7 0.0 0.0014 17.9 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|449067420|ref|YP_007434502.1| - 0.074 11.8 0.0 0.18 10.5 0.0 1.6 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain tRNA-synt_1 PF00133.22 gi|449067421|ref|YP_007434503.1| - 6.4e-126 421.0 0.1 1.2e-124 416.8 0.1 2.3 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|449067421|ref|YP_007434503.1| - 2.4e-31 108.8 1.8 4.7e-31 107.8 1.8 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|449067421|ref|YP_007434503.1| - 2.7e-21 75.8 0.1 1.2e-09 37.4 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|449067421|ref|YP_007434503.1| - 6.9e-06 25.7 0.0 0.00027 20.5 0.0 2.8 1 1 2 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|449067421|ref|YP_007434503.1| - 0.014 14.7 0.0 0.85 8.9 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.10 gi|449067421|ref|YP_007434503.1| - 0.14 12.3 0.8 6.3 7.0 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|449067421|ref|YP_007434503.1| - 0.17 11.3 0.1 7.1 6.1 0.0 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|449067421|ref|YP_007434503.1| - 0.41 10.1 1.8 1.5 8.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|449067421|ref|YP_007434503.1| - 0.67 10.4 2.4 25 5.4 0.1 2.8 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NAD_binding_8 PF13450.6 gi|449067422|ref|YP_007434504.1| - 0.0011 19.1 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|449067422|ref|YP_007434504.1| - 0.061 12.2 0.0 0.33 9.7 0.0 1.9 2 0 0 2 2 2 0 Tryptophan halogenase TMEM131_like PF12371.8 gi|449067423|ref|YP_007434505.1| - 0.12 12.7 0.1 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 Transmembrane protein 131-like DUF2675 PF11247.8 gi|449067424|ref|YP_007434506.1| - 0.028 14.6 0.0 0.034 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2675) TraT PF05818.12 gi|449067424|ref|YP_007434506.1| - 0.064 12.9 0.1 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein Arm-DNA-bind_2 PF12167.8 gi|449067424|ref|YP_007434506.1| - 0.085 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Arm DNA-binding domain Methyltransf_21 PF05050.12 gi|449067425|ref|YP_007434507.1| - 0.036 14.1 1.1 0.036 14.1 1.1 1.1 1 0 0 1 1 1 0 Methyltransferase FkbM domain Prok-RING_1 PF14446.6 gi|449067426|ref|YP_007434508.1| - 2.6e-05 24.0 2.4 0.0035 17.2 0.4 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|449067426|ref|YP_007434508.1| - 0.00078 19.4 6.6 0.13 12.3 6.6 2.2 1 1 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|449067426|ref|YP_007434508.1| - 0.0015 18.4 9.2 1.9 8.4 9.4 2.3 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.10 gi|449067426|ref|YP_007434508.1| - 0.003 17.6 5.2 0.0045 17.1 3.3 1.9 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|449067426|ref|YP_007434508.1| - 0.0052 17.0 4.0 0.43 10.9 0.7 2.3 2 0 0 2 2 2 1 zinc-ribbon zf-ribbon_3 PF13248.6 gi|449067426|ref|YP_007434508.1| - 0.012 15.0 10.1 0.025 14.0 0.3 3.1 2 1 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|449067426|ref|YP_007434508.1| - 0.016 15.2 5.6 0.063 13.3 0.8 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|449067426|ref|YP_007434508.1| - 0.022 14.6 7.7 2.1 8.3 0.3 3.1 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-H2C2_2 PF13465.6 gi|449067426|ref|YP_007434508.1| - 0.023 15.1 7.3 0.15 12.5 0.4 3.1 3 0 0 3 3 3 0 Zinc-finger double domain DUF1272 PF06906.11 gi|449067426|ref|YP_007434508.1| - 0.029 14.5 7.3 0.13 12.3 7.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) DNA_ligase_ZBD PF03119.16 gi|449067426|ref|YP_007434508.1| - 0.032 14.2 1.6 0.74 9.9 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2HC5 PF06221.13 gi|449067426|ref|YP_007434508.1| - 0.039 14.0 5.7 0.049 13.6 0.1 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type DUF4379 PF14311.6 gi|449067426|ref|YP_007434508.1| - 0.047 14.1 3.0 0.047 14.1 3.0 1.6 1 1 0 1 1 1 0 Probable Zinc-ribbon domain Rep_fac-A_C PF08646.10 gi|449067426|ref|YP_007434508.1| - 0.049 13.4 2.3 0.063 13.0 2.3 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-tcix PF14952.6 gi|449067426|ref|YP_007434508.1| - 0.051 13.2 0.3 0.051 13.2 0.3 2.4 2 1 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Nop10p PF04135.12 gi|449067426|ref|YP_007434508.1| - 0.063 13.3 5.0 0.94 9.6 5.0 2.2 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zinc_ribbon_2 PF13240.6 gi|449067426|ref|YP_007434508.1| - 0.065 13.0 0.8 0.065 13.0 0.8 3.4 4 0 0 4 4 3 0 zinc-ribbon domain C1_2 PF03107.16 gi|449067426|ref|YP_007434508.1| - 0.12 12.7 8.4 0.065 13.6 3.7 2.2 1 1 1 2 2 2 0 C1 domain Cys_rich_CPXG PF14255.6 gi|449067426|ref|YP_007434508.1| - 0.19 11.7 5.8 1.6 8.7 0.1 3.0 3 0 0 3 3 3 0 Cysteine-rich CPXCG Sgf11 PF08209.11 gi|449067426|ref|YP_007434508.1| - 0.28 10.8 8.0 2.8 7.6 0.5 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) UPF0547 PF10571.9 gi|449067426|ref|YP_007434508.1| - 0.33 11.1 0.2 0.33 11.1 0.2 2.9 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-AN1 PF01428.16 gi|449067426|ref|YP_007434508.1| - 0.36 11.0 9.5 0.68 10.1 3.7 2.4 1 1 1 2 2 2 0 AN1-like Zinc finger zf-BED PF02892.15 gi|449067426|ref|YP_007434508.1| - 0.4 10.8 12.3 7.6 6.7 0.2 3.1 1 1 1 2 2 2 0 BED zinc finger zf-RING_4 PF14570.6 gi|449067426|ref|YP_007434508.1| - 0.42 10.4 9.3 0.52 10.1 3.4 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Mu-like_Com PF10122.9 gi|449067426|ref|YP_007434508.1| - 0.56 9.7 9.9 0.26 10.7 0.8 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-Di19 PF05605.12 gi|449067426|ref|YP_007434508.1| - 0.62 10.4 9.7 2.9 8.3 0.2 3.1 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|449067426|ref|YP_007434508.1| - 0.71 9.4 9.4 2.7 7.6 0.4 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-C2H2 PF00096.26 gi|449067426|ref|YP_007434508.1| - 0.75 10.4 11.7 5.6 7.6 2.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.11 gi|449067426|ref|YP_007434508.1| - 0.91 9.5 6.4 2 8.4 1.4 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|449067426|ref|YP_007434508.1| - 1.1 8.7 6.6 4.2 6.8 0.1 2.4 2 1 1 3 3 3 0 Transcription factor zinc-finger zf-C2H2_4 PF13894.6 gi|449067426|ref|YP_007434508.1| - 1.3 10.1 13.0 7.6 7.7 0.1 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger ADK_lid PF05191.14 gi|449067426|ref|YP_007434508.1| - 1.5 8.9 8.3 0.57 10.2 4.4 2.2 2 1 0 2 2 2 0 Adenylate kinase, active site lid TFIIS_C PF01096.18 gi|449067426|ref|YP_007434508.1| - 1.7 8.6 8.4 1 9.3 0.5 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-B_box PF00643.24 gi|449067426|ref|YP_007434508.1| - 1.7 8.8 10.5 6.5 7.0 6.2 2.8 2 1 0 2 2 2 0 B-box zinc finger CpXC PF14353.6 gi|449067426|ref|YP_007434508.1| - 2 8.5 7.5 4.8 7.2 0.8 2.7 1 1 2 3 3 3 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|449067426|ref|YP_007434508.1| - 2.3 8.2 11.6 2.9 7.9 7.5 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|449067426|ref|YP_007434508.1| - 2.6 8.5 9.9 3.1 8.3 0.1 2.9 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-RING_5 PF14634.6 gi|449067426|ref|YP_007434508.1| - 3.4 7.7 11.3 1 9.4 0.4 2.8 1 1 2 3 3 3 0 zinc-RING finger domain zf-C2HC_2 PF13913.6 gi|449067426|ref|YP_007434508.1| - 6.1 6.9 17.1 6.5 6.8 0.6 3.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type NRDD PF13597.6 gi|449067426|ref|YP_007434508.1| - 8.4 5.0 8.1 8.3 5.1 3.0 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Alpha-amylase PF00128.24 gi|449067427|ref|YP_007434509.1| - 5.6e-25 88.6 9.6 4.1e-22 79.2 1.7 3.2 1 1 0 2 2 2 2 Alpha amylase, catalytic domain DUF1953 PF09196.10 gi|449067427|ref|YP_007434509.1| - 6.6e-14 51.5 0.7 1.9e-13 50.0 0.7 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1953) GIY-YIG PF01541.24 gi|449067427|ref|YP_007434509.1| - 0.0011 19.1 1.8 0.0057 16.9 1.8 2.2 1 0 0 1 1 1 1 GIY-YIG catalytic domain CBM_48 PF02922.18 gi|449067428|ref|YP_007434510.1| - 1.7e-20 73.1 0.3 5.5e-19 68.3 0.0 3.0 3 0 0 3 3 3 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 gi|449067428|ref|YP_007434510.1| - 2.6e-16 60.1 1.1 1.2e-08 35.0 0.2 3.4 1 1 1 2 2 2 2 Alpha amylase, catalytic domain GlgX_C PF18390.1 gi|449067428|ref|YP_007434510.1| - 0.0032 17.2 0.1 0.1 12.4 0.1 2.4 1 1 0 1 1 1 1 Glycogen debranching enzyme C-terminal domain Pur_ac_phosph_N PF16656.5 gi|449067428|ref|YP_007434510.1| - 0.058 14.0 0.0 0.19 12.3 0.0 1.8 1 0 0 1 1 1 0 Purple acid Phosphatase, N-terminal domain HscB_4_cys PF18256.1 gi|449067428|ref|YP_007434510.1| - 0.3 10.9 0.6 1 9.2 0.0 2.1 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Alpha-amylase PF00128.24 gi|449067429|ref|YP_007434511.1| - 9.2e-33 114.2 2.0 1.9e-22 80.3 0.1 3.3 3 0 0 3 3 3 3 Alpha amylase, catalytic domain Alpha-amyl_C PF09071.10 gi|449067429|ref|YP_007434511.1| - 5.1e-32 109.5 1.6 1.4e-31 108.1 1.6 1.8 1 0 0 1 1 1 1 Alpha-amylase, C terminal CBM_48 PF02922.18 gi|449067429|ref|YP_007434511.1| - 0.0003 21.1 0.0 0.00086 19.6 0.0 1.8 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Phage_integr_3 PF16795.5 gi|449067430|ref|YP_007434512.1| - 3.6e-46 157.0 0.3 5.4e-46 156.4 0.3 1.3 1 0 0 1 1 1 1 Archaeal phage integrase UPF0029 PF01205.19 gi|449067430|ref|YP_007434512.1| - 0.15 12.4 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein family UPF0029 DUF3726 PF12525.8 gi|449067431|ref|YP_007434513.1| - 0.018 15.1 0.2 0.053 13.6 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3726) DDE_Tnp_IS66 PF03050.14 gi|449067433|ref|YP_007434515.1| - 0.0033 17.0 0.0 0.0043 16.6 0.0 1.1 1 0 0 1 1 1 1 Transposase IS66 family DDE_Tnp_IS240 PF13610.6 gi|449067433|ref|YP_007434515.1| - 0.18 12.0 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 DDE domain SF1-HH PF16275.5 gi|449067435|ref|YP_007434517.1| - 0.084 13.2 0.0 0.084 13.2 0.0 1.1 1 0 0 1 1 1 0 Splicing factor 1 helix-hairpin domain AAA_14 PF13173.6 gi|449067436|ref|YP_007434518.1| - 3.4e-29 101.5 0.1 8.7e-29 100.2 0.1 1.8 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|449067436|ref|YP_007434518.1| - 1.5e-15 57.4 0.5 3.4e-15 56.3 0.3 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|449067436|ref|YP_007434518.1| - 9.9e-05 22.4 0.2 0.00037 20.5 0.1 1.9 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|449067436|ref|YP_007434518.1| - 0.00013 22.4 0.0 0.00022 21.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|449067436|ref|YP_007434518.1| - 0.011 16.1 0.0 0.025 15.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|449067436|ref|YP_007434518.1| - 0.013 15.9 0.2 0.38 11.1 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|449067436|ref|YP_007434518.1| - 0.028 14.7 0.0 0.065 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|449067436|ref|YP_007434518.1| - 0.029 14.7 0.0 0.092 13.1 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_18 PF13238.6 gi|449067436|ref|YP_007434518.1| - 0.06 13.9 0.2 0.33 11.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain MazE_antitoxin PF04014.18 gi|449067437|ref|YP_007434519.1| - 2.3e-05 24.2 0.9 4.4e-05 23.3 0.4 1.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin CLZ PF16526.5 gi|449067437|ref|YP_007434519.1| - 0.0015 18.8 1.2 0.0024 18.2 1.2 1.3 1 0 0 1 1 1 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels GrpE PF01025.19 gi|449067437|ref|YP_007434519.1| - 0.002 17.8 0.9 0.0028 17.3 0.9 1.2 1 0 0 1 1 1 1 GrpE MraZ PF02381.18 gi|449067437|ref|YP_007434519.1| - 0.0033 17.4 0.1 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like bZIP_1 PF00170.21 gi|449067437|ref|YP_007434519.1| - 0.013 15.5 0.9 0.013 15.5 0.9 1.6 2 0 0 2 2 2 0 bZIP transcription factor Nbl1_Borealin_N PF10444.9 gi|449067437|ref|YP_007434519.1| - 0.024 14.3 0.7 0.055 13.1 0.3 1.8 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal Corona_NS3b PF03053.14 gi|449067437|ref|YP_007434519.1| - 0.032 14.0 0.0 0.038 13.8 0.0 1.1 1 0 0 1 1 1 0 ORF3b coronavirus protein Paralemmin PF03285.15 gi|449067437|ref|YP_007434519.1| - 0.097 12.2 1.2 0.13 11.9 1.2 1.2 1 0 0 1 1 1 0 Paralemmin SOGA PF11365.8 gi|449067439|ref|YP_007434521.1| - 0.01 17.0 3.9 0.015 16.4 3.2 1.6 1 1 0 1 1 1 0 Protein SOGA PL48 PF15903.5 gi|449067439|ref|YP_007434521.1| - 0.045 12.7 1.1 0.046 12.7 1.1 1.2 1 0 0 1 1 1 0 Filopodia upregulated, FAM65 PilJ PF13675.6 gi|449067439|ref|YP_007434521.1| - 0.071 13.1 0.1 0.089 12.8 0.1 1.1 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term TSC22 PF01166.18 gi|449067439|ref|YP_007434521.1| - 0.083 13.2 9.5 0.092 13.1 1.1 3.0 1 1 1 2 2 2 0 TSC-22/dip/bun family CaM_binding PF07839.11 gi|449067439|ref|YP_007434521.1| - 0.11 13.2 3.1 0.19 12.4 3.1 1.4 1 1 0 1 1 1 0 Plant calmodulin-binding domain HR1 PF02185.16 gi|449067439|ref|YP_007434521.1| - 0.34 11.1 8.3 2.4 8.3 7.8 2.2 1 1 0 1 1 1 0 Hr1 repeat DUF1635 PF07795.11 gi|449067439|ref|YP_007434521.1| - 0.53 10.1 7.7 0.36 10.7 5.9 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1635) DUF5616 PF18481.1 gi|449067440|ref|YP_007434522.1| - 3e-23 82.7 0.3 4.8e-23 82.0 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|449067440|ref|YP_007434522.1| - 1.5e-22 79.1 1.8 2.5e-22 78.3 1.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) tRNA-synt_2c PF01411.19 gi|449067441|ref|YP_007434523.1| - 8e-117 391.0 0.0 1.1e-116 390.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|449067441|ref|YP_007434523.1| - 2.6e-11 43.4 0.9 6.8e-11 42.1 0.9 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|449067441|ref|YP_007434523.1| - 2.9e-05 24.5 1.5 9.2e-05 22.9 1.5 1.8 1 0 0 1 1 1 1 DHHA1 domain Apolipoprotein PF01442.18 gi|449067441|ref|YP_007434523.1| - 0.1 12.5 1.4 0.86 9.4 0.2 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Fib_alpha PF08702.10 gi|449067441|ref|YP_007434523.1| - 2 8.6 10.9 0.54 10.4 5.6 2.5 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Ribosomal_60s PF00428.19 gi|449067442|ref|YP_007434524.1| - 8.1e-21 74.4 11.1 9.4e-21 74.2 11.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|449067442|ref|YP_007434524.1| - 0.0056 16.7 2.6 1.7 8.7 0.8 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain EF-hand_14 PF17959.1 gi|449067442|ref|YP_007434524.1| - 0.006 16.9 0.3 0.01 16.1 0.0 1.5 2 0 0 2 2 2 1 EF-hand domain PhetRS_B1 PF18262.1 gi|449067442|ref|YP_007434524.1| - 0.14 12.4 0.3 0.25 11.6 0.3 1.6 1 1 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain Ribosomal_L10 PF00466.20 gi|449067443|ref|YP_007434525.1| - 2.8e-27 94.8 0.7 7.3e-27 93.4 0.7 1.7 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|449067443|ref|YP_007434525.1| - 7.1e-18 64.4 0.2 2.1e-17 62.9 0.2 1.9 2 0 0 2 2 2 1 Insertion domain in 60S ribosomal protein L10P DUF3484 PF11983.8 gi|449067443|ref|YP_007434525.1| - 0.085 14.0 0.2 0.22 12.7 0.2 1.7 1 0 0 1 1 1 0 Membrane-attachment and polymerisation-promoting switch Ribosomal_60s PF00428.19 gi|449067443|ref|YP_007434525.1| - 3.5 8.3 13.3 14 6.4 13.3 2.2 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|449067444|ref|YP_007434526.1| - 9.7e-36 123.4 1.3 1.2e-35 123.2 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11_N PF03946.14 gi|449067445|ref|YP_007434527.1| - 1.1e-21 76.4 0.7 1.1e-21 76.4 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|449067445|ref|YP_007434527.1| - 7.3e-19 68.0 0.6 1.5e-18 67.0 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Flagellin_IN PF07196.13 gi|449067445|ref|YP_007434527.1| - 0.077 13.2 1.3 8 6.7 0.0 2.8 3 0 0 3 3 3 0 Flagellin hook IN motif FlaG PF03646.15 gi|449067445|ref|YP_007434527.1| - 0.52 10.5 4.0 15 5.8 0.2 2.5 1 1 1 2 2 2 0 FlaG protein Spt5-NGN PF03439.13 gi|449067446|ref|YP_007434528.1| - 6.4e-22 77.2 0.7 9.7e-21 73.5 0.1 2.0 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|449067446|ref|YP_007434528.1| - 1.5e-07 31.1 0.1 3.2e-07 30.1 0.1 1.7 1 0 0 1 1 1 1 KOW motif ATP-synt_ab_Xtn PF16886.5 gi|449067446|ref|YP_007434528.1| - 0.098 12.5 1.4 1.1 9.2 0.2 2.0 1 1 1 2 2 2 0 ATPsynthase alpha/beta subunit N-term extension NusG PF02357.19 gi|449067446|ref|YP_007434528.1| - 0.37 11.3 3.4 4.2 8.0 0.2 2.9 2 1 0 2 2 2 0 Transcription termination factor nusG M11L PF11099.8 gi|449067447|ref|YP_007434529.1| - 0.0026 18.0 0.3 0.0032 17.7 0.3 1.0 1 0 0 1 1 1 1 Apoptosis regulator M11L like SecE PF00584.20 gi|449067447|ref|YP_007434529.1| - 0.026 14.4 0.1 0.032 14.1 0.1 1.2 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Lambda_CIII PF02061.16 gi|449067447|ref|YP_007434529.1| - 0.036 14.1 0.4 0.058 13.5 0.4 1.3 1 0 0 1 1 1 0 Lambda Phage CIII SRP54 PF00448.22 gi|449067448|ref|YP_007434530.1| - 8.3e-75 250.7 0.0 9.4e-75 250.6 0.0 1.0 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|449067448|ref|YP_007434530.1| - 2.9e-06 27.1 0.0 3.5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|449067448|ref|YP_007434530.1| - 6.9e-06 25.8 0.1 8.9e-06 25.4 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|449067448|ref|YP_007434530.1| - 7.3e-06 26.0 1.6 0.0017 18.3 1.6 2.2 1 1 0 1 1 1 1 NTPase AAA_17 PF13207.6 gi|449067448|ref|YP_007434530.1| - 7.7e-06 26.4 0.0 1.3e-05 25.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|449067448|ref|YP_007434530.1| - 0.00019 20.8 0.0 0.00024 20.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|449067448|ref|YP_007434530.1| - 0.00035 21.0 0.0 0.00058 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|449067448|ref|YP_007434530.1| - 0.00036 20.8 0.1 0.00071 19.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|449067448|ref|YP_007434530.1| - 0.00047 20.6 0.2 0.0009 19.7 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|449067448|ref|YP_007434530.1| - 0.0012 19.2 0.0 0.0013 19.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|449067448|ref|YP_007434530.1| - 0.0018 18.5 0.0 0.0024 18.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|449067448|ref|YP_007434530.1| - 0.0022 18.1 0.3 0.0057 16.7 0.3 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|449067448|ref|YP_007434530.1| - 0.0076 15.5 0.0 0.016 14.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.6 gi|449067448|ref|YP_007434530.1| - 0.0077 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|449067448|ref|YP_007434530.1| - 0.008 15.7 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|449067448|ref|YP_007434530.1| - 0.01 15.8 0.1 0.013 15.5 0.1 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Thymidylate_kin PF02223.17 gi|449067448|ref|YP_007434530.1| - 0.012 15.4 0.0 0.066 12.9 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase CbiA PF01656.23 gi|449067448|ref|YP_007434530.1| - 0.012 15.7 0.7 0.064 13.3 0.7 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|449067448|ref|YP_007434530.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|449067448|ref|YP_007434530.1| - 0.019 14.9 0.3 0.035 14.0 0.2 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.10 gi|449067448|ref|YP_007434530.1| - 0.029 13.8 0.0 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 GTP_EFTU PF00009.27 gi|449067448|ref|YP_007434530.1| - 0.044 13.3 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain NACHT PF05729.12 gi|449067448|ref|YP_007434530.1| - 0.053 13.4 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|449067448|ref|YP_007434530.1| - 0.059 13.1 1.1 0.2 11.4 1.1 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|449067448|ref|YP_007434530.1| - 0.063 12.5 0.2 0.094 11.9 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain Arf PF00025.21 gi|449067448|ref|YP_007434530.1| - 0.063 12.7 0.1 0.13 11.7 0.1 1.5 1 1 0 1 1 1 0 ADP-ribosylation factor family PPK2 PF03976.14 gi|449067448|ref|YP_007434530.1| - 0.073 12.6 0.0 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Viral_helicase1 PF01443.18 gi|449067448|ref|YP_007434530.1| - 0.075 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KdpD PF02702.17 gi|449067448|ref|YP_007434530.1| - 0.081 12.4 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain MeaB PF03308.16 gi|449067448|ref|YP_007434530.1| - 0.089 11.8 0.2 0.58 9.1 0.1 2.2 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|449067448|ref|YP_007434530.1| - 0.1 11.7 0.1 0.15 11.1 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|449067448|ref|YP_007434530.1| - 0.15 12.0 0.2 0.54 10.2 0.0 2.0 2 1 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|449067448|ref|YP_007434530.1| - 0.21 12.1 0.3 0.39 11.3 0.3 1.6 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|449067448|ref|YP_007434530.1| - 0.27 10.4 1.6 1.2 8.3 0.4 2.1 1 1 0 2 2 2 0 Anion-transporting ATPase Prefoldin PF02996.17 gi|449067449|ref|YP_007434531.1| - 1.3e-26 92.9 4.2 1.3e-26 92.9 4.2 1.3 2 0 0 2 2 2 1 Prefoldin subunit BppU_IgG PF18667.1 gi|449067449|ref|YP_007434531.1| - 0.004 17.3 0.0 0.0061 16.7 0.0 1.3 1 0 0 1 1 1 1 Baseplate upper protein immunoglobulin like domain FAP206 PF12018.8 gi|449067449|ref|YP_007434531.1| - 0.019 14.5 1.9 0.11 12.0 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF948 PF06103.11 gi|449067449|ref|YP_007434531.1| - 0.04 14.2 0.4 2.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HHH_6 PF14579.6 gi|449067449|ref|YP_007434531.1| - 0.045 14.0 0.1 0.12 12.7 0.1 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif DUF4795 PF16043.5 gi|449067449|ref|YP_007434531.1| - 0.056 13.0 3.1 0.071 12.7 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) NPV_P10 PF05531.12 gi|449067449|ref|YP_007434531.1| - 0.059 13.8 2.5 1.7 9.2 0.2 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF5320 PF17253.2 gi|449067449|ref|YP_007434531.1| - 0.07 14.2 2.7 6.9 7.8 0.9 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5320) SURF6 PF04935.12 gi|449067449|ref|YP_007434531.1| - 0.1 12.4 1.5 0.18 11.6 1.5 1.7 1 1 0 1 1 1 0 Surfeit locus protein 6 Sec23_helical PF04815.15 gi|449067449|ref|YP_007434531.1| - 0.19 11.6 0.6 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 helical domain DUF148 PF02520.17 gi|449067449|ref|YP_007434531.1| - 0.22 11.6 6.7 1.4 9.0 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF148 Muted PF14942.6 gi|449067449|ref|YP_007434531.1| - 0.24 11.7 3.5 9.2 6.6 0.1 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF2205 PF10224.9 gi|449067449|ref|YP_007434531.1| - 0.38 10.8 4.4 0.16 12.0 0.6 2.2 2 0 0 2 2 2 0 Short coiled-coil protein CorA PF01544.18 gi|449067449|ref|YP_007434531.1| - 0.44 9.8 5.5 0.62 9.3 0.8 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein KID PF02524.14 gi|449067449|ref|YP_007434531.1| - 1.2 9.5 4.2 16 6.1 0.0 3.3 3 0 0 3 3 3 0 KID repeat Ribosomal_L18A PF01775.17 gi|449067450|ref|YP_007434532.1| - 9e-12 45.2 0.7 1.8e-11 44.2 0.7 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Ribosomal_S4 PF00163.19 gi|449067450|ref|YP_007434532.1| - 0.031 15.2 0.2 0.036 15.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S4/S9 N-terminal domain eIF-6 PF01912.18 gi|449067451|ref|YP_007434533.1| - 1.3e-62 210.7 9.3 1.6e-62 210.4 9.3 1.2 1 0 0 1 1 1 1 eIF-6 family PNK3P PF08645.11 gi|449067451|ref|YP_007434533.1| - 0.53 10.0 2.0 0.44 10.2 0.3 1.7 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase Ribosomal_L31e PF01198.19 gi|449067452|ref|YP_007434534.1| - 5e-07 29.9 2.8 1e-06 28.8 2.8 1.5 1 0 0 1 1 1 1 Ribosomal protein L31e RPN2_C PF18004.1 gi|449067452|ref|YP_007434534.1| - 0.01 15.8 9.3 0.011 15.7 9.3 1.1 1 0 0 1 1 1 0 26S proteasome regulatory subunit RPN2 C-terminal domain DUF305 PF03713.13 gi|449067452|ref|YP_007434534.1| - 0.013 15.6 1.3 0.016 15.4 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF305) ACCA PF03255.14 gi|449067452|ref|YP_007434534.1| - 0.026 14.4 4.0 0.032 14.1 4.0 1.2 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ST7 PF04184.12 gi|449067452|ref|YP_007434534.1| - 0.039 12.4 3.8 0.042 12.3 3.8 1.1 1 0 0 1 1 1 0 ST7 protein NtA PF03146.15 gi|449067452|ref|YP_007434534.1| - 0.15 11.9 1.9 0.26 11.2 1.9 1.5 1 1 0 1 1 1 0 Agrin NtA domain Peptidase_S49_N PF08496.10 gi|449067452|ref|YP_007434534.1| - 1.3 9.1 7.1 1.7 8.7 7.1 1.3 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Presenilin PF01080.17 gi|449067452|ref|YP_007434534.1| - 3.4 6.3 5.5 3.4 6.3 5.5 1.1 1 0 0 1 1 1 0 Presenilin Ribosomal_L39 PF00832.20 gi|449067453|ref|YP_007434535.1| - 1.2e-19 69.7 7.6 1.4e-19 69.4 7.6 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.20 gi|449067454|ref|YP_007434536.1| - 1.5e-26 92.9 12.9 1.6e-26 92.8 12.9 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain 4HB_MCP_1 PF12729.7 gi|449067454|ref|YP_007434536.1| - 0.0071 15.9 4.4 0.0077 15.8 4.4 1.0 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction DUF4355 PF14265.6 gi|449067454|ref|YP_007434536.1| - 0.56 10.5 8.5 0.42 10.9 2.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4355) Ribosomal_S19e PF01090.19 gi|449067455|ref|YP_007434537.1| - 2.5e-48 163.2 0.0 2.9e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|449067455|ref|YP_007434537.1| - 0.0068 16.3 0.7 0.013 15.3 0.1 1.8 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_12 PF08461.10 gi|449067455|ref|YP_007434537.1| - 0.012 15.6 0.0 0.038 13.9 0.0 1.8 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain DUF2250 PF10007.9 gi|449067455|ref|YP_007434537.1| - 0.057 13.5 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|449067455|ref|YP_007434537.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain TrmB PF01978.19 gi|449067455|ref|YP_007434537.1| - 0.092 12.6 0.0 0.2 11.6 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|449067455|ref|YP_007434537.1| - 0.14 12.5 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator QRPTase_C PF01729.19 gi|449067456|ref|YP_007434538.1| - 5.8e-22 78.2 0.0 7.9e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|449067456|ref|YP_007434538.1| - 9.9e-06 25.9 0.0 7.5e-05 23.1 0.0 2.2 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|449067456|ref|YP_007434538.1| - 0.00017 21.6 0.0 0.00032 20.7 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|449067456|ref|YP_007434538.1| - 0.17 12.3 0.0 0.77 10.2 0.0 1.9 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MazE_antitoxin PF04014.18 gi|449067457|ref|YP_007434539.1| - 4.6e-08 32.8 0.1 2.9e-07 30.3 0.0 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PhoU PF01895.19 gi|449067457|ref|YP_007434539.1| - 0.0006 20.2 2.7 0.0006 20.2 2.7 3.0 3 1 0 3 3 3 1 PhoU domain Tsi6 PF18660.1 gi|449067457|ref|YP_007434539.1| - 0.022 14.8 1.2 1.1 9.3 0.2 2.6 2 1 0 2 2 2 0 Tsi6 DUF1542 PF07564.11 gi|449067457|ref|YP_007434539.1| - 0.072 13.2 1.3 0.21 11.7 1.3 1.8 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) Cytochrom_B562 PF07361.11 gi|449067457|ref|YP_007434539.1| - 0.075 13.7 0.5 0.24 12.1 0.1 2.0 2 0 0 2 2 2 0 Cytochrome b562 AbiJ_NTD4 PF18863.1 gi|449067457|ref|YP_007434539.1| - 0.18 12.3 4.4 6.8 7.1 4.3 3.0 1 1 0 1 1 1 0 AbiJ N-terminal domain 4 Exonuc_VII_L PF02601.15 gi|449067457|ref|YP_007434539.1| - 0.47 10.0 5.9 3.9 7.0 5.8 1.9 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF711 PF05167.12 gi|449067458|ref|YP_007434540.1| - 5.5e-32 111.2 0.0 1.2e-31 110.0 0.0 1.5 2 0 0 2 2 2 1 Uncharacterised ACR (DUF711) DrsE_2 PF13686.6 gi|449067459|ref|YP_007434541.1| - 1.9e-15 57.1 0.2 2.3e-09 37.3 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|449067459|ref|YP_007434541.1| - 1.8e-09 38.0 0.0 2.1e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|449067460|ref|YP_007434542.1| - 3.4e-10 39.6 0.0 4.1e-10 39.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA FAS_I_H PF18314.1 gi|449067460|ref|YP_007434542.1| - 0.032 13.9 0.0 0.04 13.6 0.0 1.1 1 0 0 1 1 1 0 Fatty acid synthase type I helical domain CAP_N PF01213.19 gi|449067460|ref|YP_007434542.1| - 0.15 11.5 0.8 0.17 11.3 0.8 1.0 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal PALP PF00291.25 gi|449067461|ref|YP_007434543.1| - 2.4e-50 171.6 0.1 7e-50 170.1 0.1 1.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pkinase PF00069.25 gi|449067463|ref|YP_007434545.1| - 0.004 16.5 0.1 0.0075 15.7 0.1 1.7 1 1 0 1 1 1 1 Protein kinase domain TF_Zn_Ribbon PF08271.12 gi|449067464|ref|YP_007434546.1| - 0.032 13.7 0.0 0.049 13.1 0.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|449067464|ref|YP_007434546.1| - 0.035 14.0 0.2 0.055 13.4 0.2 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|449067464|ref|YP_007434546.1| - 0.051 13.7 0.1 0.067 13.3 0.1 1.2 1 0 0 1 1 1 0 Zinc ribbon domain Mob_synth_C PF06463.13 gi|449067465|ref|YP_007434547.1| - 6.2e-25 87.6 0.1 1e-24 86.9 0.1 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 gi|449067465|ref|YP_007434547.1| - 6.5e-25 88.4 0.1 1.9e-24 87.0 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|449067465|ref|YP_007434547.1| - 1.3e-07 31.9 0.1 5.5e-07 29.9 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|449067465|ref|YP_007434547.1| - 7.5e-05 22.9 0.0 0.00016 21.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_M24 PF00557.24 gi|449067466|ref|YP_007434548.1| - 1.2e-63 214.6 0.9 1.5e-63 214.3 0.9 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|449067466|ref|YP_007434548.1| - 9.6e-18 65.1 0.0 1.7e-17 64.3 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain GTP_cyclohydroI PF01227.22 gi|449067467|ref|YP_007434549.1| - 1.4e-63 213.5 0.1 2e-63 213.0 0.1 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase I DUF3199 PF11436.8 gi|449067467|ref|YP_007434549.1| - 0.092 12.8 0.1 0.6 10.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3199) KIP1 PF07765.12 gi|449067467|ref|YP_007434549.1| - 0.15 12.2 0.7 0.44 10.7 0.3 2.0 2 0 0 2 2 2 0 KIP1-like protein MarR PF01047.22 gi|449067468|ref|YP_007434550.1| - 6.8e-10 38.7 0.1 1.8e-08 34.1 0.2 2.8 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 gi|449067468|ref|YP_007434550.1| - 3.3e-08 32.9 1.6 9e-08 31.6 0.7 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|449067468|ref|YP_007434550.1| - 1e-06 28.5 0.0 2.3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|449067468|ref|YP_007434550.1| - 8.5e-06 25.5 0.5 1.5e-05 24.8 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|449067468|ref|YP_007434550.1| - 4.7e-05 23.3 0.2 0.00013 21.9 0.2 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|449067468|ref|YP_007434550.1| - 5.5e-05 23.0 0.2 0.0012 18.7 0.2 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|449067468|ref|YP_007434550.1| - 0.0009 19.4 0.2 0.024 14.8 0.2 2.3 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC Cdc6_C PF09079.11 gi|449067468|ref|YP_007434550.1| - 0.0025 17.8 0.1 0.0049 16.8 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain HTH_IclR PF09339.10 gi|449067468|ref|YP_007434550.1| - 0.0032 17.2 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|449067468|ref|YP_007434550.1| - 0.004 17.0 0.6 0.0094 15.8 0.6 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|449067468|ref|YP_007434550.1| - 0.0073 16.2 0.5 0.027 14.4 0.1 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_9 PF08221.11 gi|449067468|ref|YP_007434550.1| - 0.018 15.1 0.1 0.035 14.2 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_46 PF15977.5 gi|449067468|ref|YP_007434550.1| - 0.021 14.8 0.7 0.054 13.5 0.5 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA binding HTH_27 PF13463.6 gi|449067468|ref|YP_007434550.1| - 0.061 13.8 0.1 0.13 12.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|449067468|ref|YP_007434550.1| - 0.063 13.4 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 DprA winged helix domain HTH_54 PF18607.1 gi|449067468|ref|YP_007434550.1| - 0.074 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 ParA helix turn helix domain Phage_rep_O PF04492.13 gi|449067468|ref|YP_007434550.1| - 0.079 13.5 0.0 0.24 12.0 0.0 1.8 1 0 0 1 1 1 0 Bacteriophage replication protein O Rrf2 PF02082.20 gi|449067468|ref|YP_007434550.1| - 0.16 12.4 0.1 0.86 10.0 0.2 2.0 2 0 0 2 2 2 0 Transcriptional regulator Gln-synt_C PF00120.24 gi|449067469|ref|YP_007434551.1| - 6.1e-135 449.7 0.0 7.7e-135 449.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|449067469|ref|YP_007434551.1| - 3.9e-25 87.4 0.0 8.8e-25 86.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ABC_tran PF00005.27 gi|449067470|ref|YP_007434552.1| - 2.2e-21 76.8 0.0 3e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067470|ref|YP_007434552.1| - 5.3e-09 36.3 2.2 5.6e-05 23.1 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|449067470|ref|YP_007434552.1| - 5.8e-05 23.4 0.1 0.00014 22.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|449067470|ref|YP_007434552.1| - 0.00011 22.0 0.1 0.00013 21.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|449067470|ref|YP_007434552.1| - 0.00028 20.7 9.8 0.0014 18.4 9.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|449067470|ref|YP_007434552.1| - 0.00065 20.2 9.1 0.012 16.1 9.0 2.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|449067470|ref|YP_007434552.1| - 0.00074 18.9 0.0 0.0015 17.8 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin NB-ARC PF00931.22 gi|449067470|ref|YP_007434552.1| - 0.00075 18.8 1.6 0.001 18.3 0.1 1.8 2 1 0 2 2 2 1 NB-ARC domain AAA_13 PF13166.6 gi|449067470|ref|YP_007434552.1| - 0.00099 17.9 0.2 0.0015 17.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|449067470|ref|YP_007434552.1| - 0.0026 17.7 3.2 0.012 15.5 3.2 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|449067470|ref|YP_007434552.1| - 0.003 17.5 0.1 0.0052 16.7 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_18 PF13238.6 gi|449067470|ref|YP_007434552.1| - 0.0041 17.7 0.7 0.01 16.4 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|449067470|ref|YP_007434552.1| - 0.0051 16.5 0.1 0.0095 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2075 PF09848.9 gi|449067470|ref|YP_007434552.1| - 0.0065 15.7 0.0 0.0085 15.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PIF1 PF05970.14 gi|449067470|ref|YP_007434552.1| - 0.0073 15.5 0.3 0.013 14.6 0.1 1.5 2 0 0 2 2 2 1 PIF1-like helicase AAA_16 PF13191.6 gi|449067470|ref|YP_007434552.1| - 0.0077 16.6 0.0 0.0099 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|449067470|ref|YP_007434552.1| - 0.0081 16.6 0.2 0.025 15.0 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|449067470|ref|YP_007434552.1| - 0.017 15.3 0.0 0.035 14.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|449067470|ref|YP_007434552.1| - 0.019 15.0 4.8 3.5 7.7 4.8 2.3 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|449067470|ref|YP_007434552.1| - 0.021 13.9 0.0 0.036 13.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein TsaE PF02367.17 gi|449067470|ref|YP_007434552.1| - 0.027 14.5 0.1 0.061 13.3 0.0 1.5 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|449067470|ref|YP_007434552.1| - 0.034 13.9 0.0 0.079 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|449067470|ref|YP_007434552.1| - 0.042 13.8 0.2 0.073 13.0 0.1 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 gi|449067470|ref|YP_007434552.1| - 0.043 13.3 0.2 0.086 12.3 0.2 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|449067470|ref|YP_007434552.1| - 0.06 13.6 0.0 3.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.9 gi|449067470|ref|YP_007434552.1| - 0.068 12.9 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Stk19 PF10494.9 gi|449067470|ref|YP_007434552.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 MobB PF03205.14 gi|449067470|ref|YP_007434552.1| - 0.16 11.9 0.4 0.49 10.3 0.0 2.0 2 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Thioredoxin PF00085.20 gi|449067471|ref|YP_007434553.1| - 1.7e-22 79.4 0.0 2.5e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|449067471|ref|YP_007434553.1| - 2.2e-06 28.1 0.6 1.6e-05 25.3 0.6 2.4 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|449067471|ref|YP_007434553.1| - 0.00094 18.6 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|449067471|ref|YP_007434553.1| - 0.0044 17.3 0.3 0.097 13.0 0.0 2.6 1 1 2 3 3 3 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|449067471|ref|YP_007434553.1| - 0.012 15.7 0.1 0.031 14.3 0.0 1.7 1 1 1 2 2 2 0 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|449067471|ref|YP_007434553.1| - 0.053 13.7 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|449067471|ref|YP_007434553.1| - 0.063 13.1 0.1 0.093 12.5 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin GHMP_kinases_C PF08544.13 gi|449067472|ref|YP_007434554.1| - 0.019 15.3 0.0 0.034 14.5 0.0 1.3 1 0 0 1 1 1 0 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|449067472|ref|YP_007434554.1| - 0.044 14.0 0.1 0.075 13.3 0.1 1.4 1 0 0 1 1 1 0 GHMP kinases N terminal domain SAM_LFY PF01698.16 gi|449067472|ref|YP_007434554.1| - 0.044 13.7 0.1 0.36 10.8 0.1 2.2 1 1 1 2 2 2 0 Floricaula / Leafy protein SAM domain ANF_receptor PF01094.28 gi|449067472|ref|YP_007434554.1| - 0.16 11.0 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Receptor family ligand binding region Methyltr_RsmB-F PF01189.17 gi|449067473|ref|YP_007434555.1| - 2.4e-36 125.3 0.0 4e-34 118.0 0.0 2.2 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|449067473|ref|YP_007434555.1| - 8e-07 29.0 0.0 1.4e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.20 gi|449067473|ref|YP_007434555.1| - 0.00018 21.4 0.6 0.00041 20.3 0.6 1.6 1 0 0 1 1 1 1 PUA domain FliMN_C PF01052.20 gi|449067473|ref|YP_007434555.1| - 0.11 12.5 0.1 1.8 8.6 0.1 2.4 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term FlgI PF02119.16 gi|449067473|ref|YP_007434555.1| - 0.12 11.3 1.2 0.98 8.3 1.2 2.0 1 1 0 1 1 1 0 Flagellar P-ring protein Hexapep PF00132.24 gi|449067474|ref|YP_007434556.1| - 7.2e-19 66.7 15.3 2.8e-08 33.1 2.4 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|449067474|ref|YP_007434556.1| - 1e-06 28.4 9.2 4e-05 23.3 3.2 3.7 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Radical_SAM PF04055.21 gi|449067475|ref|YP_007434557.1| - 7.1e-14 52.5 0.1 4.7e-13 49.9 0.1 2.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|449067475|ref|YP_007434557.1| - 4.9e-10 39.8 0.0 1.7e-09 38.1 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|449067475|ref|YP_007434557.1| - 1.2e-08 35.1 0.0 4.8e-08 33.2 0.0 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Phage_integrase PF00589.22 gi|449067476|ref|YP_007434558.1| - 6.1e-38 130.3 2.5 1.4e-37 129.2 0.8 2.0 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|449067476|ref|YP_007434558.1| - 1.1e-13 51.4 0.5 4.1e-08 33.6 0.0 2.6 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|449067476|ref|YP_007434558.1| - 3.2e-08 33.8 0.9 0.0039 17.5 0.0 2.8 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|449067476|ref|YP_007434558.1| - 0.00045 20.2 1.3 0.0041 17.0 1.3 2.3 1 1 0 1 1 1 1 Archaeal phage integrase PMSI1 PF15322.6 gi|449067476|ref|YP_007434558.1| - 0.081 12.4 0.1 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 Protein missing in infertile sperm 1, putative Pyr_redox_2 PF07992.14 gi|449067477|ref|YP_007434559.1| - 5.7e-06 25.8 0.0 0.0024 17.1 0.0 3.3 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449067477|ref|YP_007434559.1| - 0.012 14.9 0.0 0.098 11.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449067477|ref|YP_007434559.1| - 0.016 15.8 0.0 8.9 6.9 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase VitK2_biosynth PF02621.14 gi|449067478|ref|YP_007434560.1| - 0.00016 21.3 0.0 0.86 9.1 0.0 2.9 1 1 2 3 3 3 2 Menaquinone biosynthesis T2SSE PF00437.20 gi|449067480|ref|YP_007434562.1| - 1.8e-42 145.3 0.0 4.6e-42 144.0 0.0 1.6 1 1 1 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|449067480|ref|YP_007434562.1| - 2.4e-05 24.9 0.0 6.3e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|449067480|ref|YP_007434562.1| - 0.00018 21.2 0.0 0.00045 19.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|449067480|ref|YP_007434562.1| - 0.00023 21.7 0.1 0.00023 21.7 0.1 2.9 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|449067480|ref|YP_007434562.1| - 0.00026 21.3 0.0 0.0006 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|449067480|ref|YP_007434562.1| - 0.00037 20.9 0.0 0.00087 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|449067480|ref|YP_007434562.1| - 0.00086 18.9 0.1 0.0019 17.8 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|449067480|ref|YP_007434562.1| - 0.0071 16.4 0.1 0.03 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.20 gi|449067480|ref|YP_007434562.1| - 0.0079 15.4 1.1 0.073 12.2 0.1 2.1 2 0 0 2 2 2 1 G-protein alpha subunit ATPase_2 PF01637.18 gi|449067480|ref|YP_007434562.1| - 0.0095 15.9 0.0 0.0095 15.9 0.0 3.0 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|449067480|ref|YP_007434562.1| - 0.013 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_21 PF13304.6 gi|449067480|ref|YP_007434562.1| - 0.014 15.2 0.1 0.014 15.2 0.1 2.3 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|449067480|ref|YP_007434562.1| - 0.015 15.4 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|449067480|ref|YP_007434562.1| - 0.015 15.8 0.0 0.035 14.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|449067480|ref|YP_007434562.1| - 0.016 14.7 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein FtsK_SpoIIIE PF01580.18 gi|449067480|ref|YP_007434562.1| - 0.016 14.6 0.0 0.035 13.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRPRB PF09439.10 gi|449067480|ref|YP_007434562.1| - 0.02 14.3 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|449067480|ref|YP_007434562.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase RNA12 PF10443.9 gi|449067480|ref|YP_007434562.1| - 0.024 13.4 0.0 0.045 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein AAA_28 PF13521.6 gi|449067480|ref|YP_007434562.1| - 0.024 14.9 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|449067480|ref|YP_007434562.1| - 0.034 14.1 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|449067480|ref|YP_007434562.1| - 0.039 13.9 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Adeno_IVa2 PF02456.15 gi|449067480|ref|YP_007434562.1| - 0.04 12.7 0.0 0.071 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA PF00004.29 gi|449067480|ref|YP_007434562.1| - 0.056 13.9 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|449067480|ref|YP_007434562.1| - 0.096 12.1 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SpoVIF PF14069.6 gi|449067480|ref|YP_007434562.1| - 0.099 12.4 1.4 0.67 9.8 0.2 2.5 2 0 0 2 2 2 0 Stage VI sporulation protein F PduV-EutP PF10662.9 gi|449067480|ref|YP_007434562.1| - 0.1 12.4 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.6 gi|449067480|ref|YP_007434562.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|449067480|ref|YP_007434562.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.6 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Roc PF08477.13 gi|449067480|ref|YP_007434562.1| - 0.13 12.5 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Viral_helicase1 PF01443.18 gi|449067480|ref|YP_007434562.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TrwB_AAD_bind PF10412.9 gi|449067480|ref|YP_007434562.1| - 0.16 10.9 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.14 gi|449067480|ref|YP_007434562.1| - 0.16 11.9 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Pilin_N PF07790.11 gi|449067482|ref|YP_007434564.1| - 0.00013 22.8 1.8 0.00024 22.0 1.8 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal CBM_4_9 PF02018.17 gi|449067482|ref|YP_007434564.1| - 0.029 14.7 0.2 0.13 12.5 0.2 2.0 1 1 0 1 1 1 0 Carbohydrate binding domain fn3_3 PF14686.6 gi|449067482|ref|YP_007434564.1| - 0.071 12.9 0.6 12 5.8 0.0 2.4 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II PL48 PF15903.5 gi|449067482|ref|YP_007434564.1| - 0.25 10.3 0.0 0.3 10.0 0.0 1.1 1 0 0 1 1 1 0 Filopodia upregulated, FAM65 WD40_3 PF15911.5 gi|449067483|ref|YP_007434565.1| - 0.023 14.7 0.1 0.058 13.4 0.1 1.8 1 0 0 1 1 1 0 WD domain, G-beta repeat HhH-GPD PF00730.25 gi|449067484|ref|YP_007434566.1| - 1.6e-16 60.7 0.0 2.8e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|449067484|ref|YP_007434566.1| - 0.0012 19.1 5.0 0.0022 18.3 5.0 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|449067484|ref|YP_007434566.1| - 0.004 17.7 0.8 0.033 14.8 0.4 2.3 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|449067484|ref|YP_007434566.1| - 0.0052 16.6 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif vATP-synt_AC39 PF01992.16 gi|449067484|ref|YP_007434566.1| - 0.043 13.3 0.2 0.051 13.1 0.2 1.2 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit HHH_8 PF14716.6 gi|449067484|ref|YP_007434566.1| - 0.11 12.8 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain ParBc PF02195.18 gi|449067485|ref|YP_007434567.1| - 1e-07 32.2 0.0 1.8e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|449067485|ref|YP_007434567.1| - 1.4e-06 27.4 0.5 0.0044 15.9 0.2 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1015) B5 PF03484.15 gi|449067485|ref|YP_007434567.1| - 0.07 13.4 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 tRNA synthetase B5 domain Glycos_transf_2 PF00535.26 gi|449067486|ref|YP_007434568.1| - 3.8e-21 75.6 0.0 5.5e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|449067486|ref|YP_007434568.1| - 1.7e-17 64.0 0.2 1.7e-17 64.0 0.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|449067486|ref|YP_007434568.1| - 2.1e-11 43.9 0.1 2.9e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|449067486|ref|YP_007434568.1| - 3.8e-11 43.3 0.0 6.3e-11 42.6 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|449067486|ref|YP_007434568.1| - 1.5e-08 34.3 0.0 3.3e-08 33.2 0.0 1.6 1 1 1 2 2 2 1 Glycosyl transferase family 21 Osmo_MPGsynth PF09488.10 gi|449067486|ref|YP_007434568.1| - 0.045 12.4 0.1 0.064 12.0 0.1 1.1 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) HKR_ArcB_TM PF18415.1 gi|449067486|ref|YP_007434568.1| - 7.2 7.5 10.2 14 6.6 0.5 3.0 3 0 0 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain DEAD_assoc PF08494.11 gi|449067487|ref|YP_007434569.1| - 2.1e-55 187.5 0.0 3.6e-55 186.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|449067487|ref|YP_007434569.1| - 1.9e-28 99.4 0.0 6.2e-27 94.5 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|449067487|ref|YP_007434569.1| - 1e-16 61.3 0.1 3.3e-16 59.6 0.1 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|449067487|ref|YP_007434569.1| - 4.5e-08 33.3 0.0 1.6e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Transketolase_C PF02780.20 gi|449067487|ref|YP_007434569.1| - 0.0038 17.1 0.0 0.012 15.5 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain AAA_19 PF13245.6 gi|449067487|ref|YP_007434569.1| - 0.012 15.9 0.0 5.3 7.4 0.0 2.8 2 1 0 2 2 2 0 AAA domain LapD_MoxY_N PF16448.5 gi|449067487|ref|YP_007434569.1| - 0.15 11.9 0.0 0.4 10.6 0.0 1.6 1 0 0 1 1 1 0 LapD/MoxY periplasmic domain MGS PF02142.22 gi|449067487|ref|YP_007434569.1| - 0.23 11.7 1.0 3.1 8.0 0.1 3.1 3 0 0 3 3 3 0 MGS-like domain F-112 PF09645.10 gi|449067488|ref|YP_007434570.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 F-112 protein HrcA_DNA-bdg PF03444.15 gi|449067489|ref|YP_007434571.1| - 7.6e-36 121.6 0.3 1.6e-35 120.6 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|449067489|ref|YP_007434571.1| - 6e-25 87.5 1.0 4.2e-13 49.5 0.9 2.6 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|449067489|ref|YP_007434571.1| - 7.9e-09 35.8 0.4 3.4e-08 33.7 0.0 2.3 2 1 0 2 2 2 1 Transcriptional regulator eIF-1a PF01176.19 gi|449067489|ref|YP_007434571.1| - 2.6e-05 23.9 0.3 0.00057 19.7 0.2 2.5 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 HTH_11 PF08279.12 gi|449067489|ref|YP_007434571.1| - 3.4e-05 23.7 1.1 6.5e-05 22.8 0.1 2.0 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|449067489|ref|YP_007434571.1| - 0.022 14.7 0.3 0.059 13.3 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449067489|ref|YP_007434571.1| - 0.039 13.5 0.7 0.12 11.9 0.7 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|449067489|ref|YP_007434571.1| - 0.044 13.4 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|449067489|ref|YP_007434571.1| - 0.049 13.4 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|449067489|ref|YP_007434571.1| - 0.077 12.7 0.3 0.72 9.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|449067489|ref|YP_007434571.1| - 0.13 12.1 0.2 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|449067489|ref|YP_007434571.1| - 0.14 12.1 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2192 PF09958.9 gi|449067490|ref|YP_007434572.1| - 6.4e-79 264.7 6.4 7.1e-79 264.5 6.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Laminin_II PF06009.12 gi|449067491|ref|YP_007434573.1| - 0.0012 18.9 0.7 0.0015 18.5 0.7 1.2 1 0 0 1 1 1 1 Laminin Domain II T3SS_needle_F PF09392.10 gi|449067491|ref|YP_007434573.1| - 0.0071 16.5 0.0 3 8.1 0.0 2.1 2 0 0 2 2 2 2 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF FlaC_arch PF05377.11 gi|449067491|ref|YP_007434573.1| - 0.02 15.2 2.4 0.043 14.2 2.4 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF3896 PF13035.6 gi|449067491|ref|YP_007434573.1| - 0.029 14.5 0.2 0.075 13.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3896) Mt_ATP-synt_D PF05873.12 gi|449067491|ref|YP_007434573.1| - 0.057 13.3 0.2 0.082 12.8 0.2 1.2 1 0 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) DUF2532 PF10811.8 gi|449067491|ref|YP_007434573.1| - 0.062 13.3 0.2 0.084 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2532) DBD_Tnp_Mut PF03108.15 gi|449067491|ref|YP_007434573.1| - 0.068 13.2 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 MuDR family transposase DUF16 PF01519.16 gi|449067491|ref|YP_007434573.1| - 0.071 13.6 0.2 0.11 12.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF16 XhlA PF10779.9 gi|449067491|ref|YP_007434573.1| - 0.073 13.3 2.3 0.12 12.6 2.3 1.3 1 0 0 1 1 1 0 Haemolysin XhlA bZIP_1 PF00170.21 gi|449067491|ref|YP_007434573.1| - 0.12 12.5 2.6 0.26 11.4 2.6 1.6 1 1 0 1 1 1 0 bZIP transcription factor Macscav_rec PF03523.13 gi|449067491|ref|YP_007434573.1| - 0.13 12.1 0.3 0.24 11.3 0.3 1.4 1 0 0 1 1 1 0 Macrophage scavenger receptor DivIC PF04977.15 gi|449067491|ref|YP_007434573.1| - 0.56 10.0 3.0 2.5 7.9 3.0 1.9 1 1 0 1 1 1 0 Septum formation initiator HTH_3 PF01381.22 gi|449067492|ref|YP_007434574.1| - 4.4e-08 33.0 0.5 9.8e-08 31.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_11 PF08279.12 gi|449067492|ref|YP_007434574.1| - 0.00037 20.4 0.9 0.00092 19.1 0.1 2.1 2 0 0 2 2 2 1 HTH domain YdaS_antitoxin PF15943.5 gi|449067492|ref|YP_007434574.1| - 0.0017 18.2 0.0 0.0044 16.8 0.0 1.8 1 1 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 gi|449067492|ref|YP_007434574.1| - 0.0017 18.0 0.1 0.003 17.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|449067492|ref|YP_007434574.1| - 0.0022 17.4 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 JIP_LZII PF16471.5 gi|449067492|ref|YP_007434574.1| - 0.0051 16.9 2.1 0.0051 16.9 2.1 1.7 2 0 0 2 2 2 1 JNK-interacting protein leucine zipper II HTH_26 PF13443.6 gi|449067492|ref|YP_007434574.1| - 0.0055 17.1 0.1 0.04 14.4 0.0 2.1 2 1 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Trp_repressor PF01371.19 gi|449067492|ref|YP_007434574.1| - 0.0062 16.6 0.0 0.015 15.4 0.0 1.7 1 1 1 2 2 2 1 Trp repressor protein HTH_AsnC-type PF13404.6 gi|449067492|ref|YP_007434574.1| - 0.0066 16.3 4.2 0.63 9.9 1.2 3.3 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|449067492|ref|YP_007434574.1| - 0.0092 16.2 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_31 PF13560.6 gi|449067492|ref|YP_007434574.1| - 0.011 16.1 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|449067492|ref|YP_007434574.1| - 0.012 15.5 1.0 0.075 12.9 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|449067492|ref|YP_007434574.1| - 0.013 15.4 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|449067492|ref|YP_007434574.1| - 0.019 14.5 0.1 0.019 14.5 0.1 3.7 3 1 1 4 4 4 0 Winged helix-turn-helix DNA-binding KORA PF16509.5 gi|449067492|ref|YP_007434574.1| - 0.021 15.1 0.1 0.045 14.0 0.0 1.7 1 1 1 2 2 2 0 TrfB plasmid transcriptional repressor ParB PF08775.10 gi|449067492|ref|YP_007434574.1| - 0.031 14.8 3.4 0.07 13.6 2.9 1.8 1 1 0 1 1 1 0 ParB family HTH_23 PF13384.6 gi|449067492|ref|YP_007434574.1| - 0.031 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain ENT PF03735.14 gi|449067492|ref|YP_007434574.1| - 0.037 14.1 0.5 0.14 12.2 0.5 2.1 1 1 0 1 1 1 0 ENT domain LacI PF00356.21 gi|449067492|ref|YP_007434574.1| - 0.041 13.7 0.2 3.6 7.5 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family HTH_28 PF13518.6 gi|449067492|ref|YP_007434574.1| - 0.046 13.9 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FAD_binding_1 PF00667.20 gi|449067492|ref|YP_007434574.1| - 0.094 12.3 0.1 0.099 12.2 0.1 1.1 1 0 0 1 1 1 0 FAD binding domain Peptidase_Prp PF04327.12 gi|449067492|ref|YP_007434574.1| - 0.11 12.8 0.2 0.16 12.3 0.2 1.4 1 1 0 1 1 1 0 Cysteine protease Prp Aminotran_1_2 PF00155.21 gi|449067494|ref|YP_007434576.1| - 5.1e-41 141.0 0.0 5.8e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|449067494|ref|YP_007434576.1| - 1e-09 37.7 0.0 1.4e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|449067494|ref|YP_007434576.1| - 0.0015 18.0 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|449067494|ref|YP_007434576.1| - 0.016 13.8 0.0 0.028 13.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|449067494|ref|YP_007434576.1| - 0.037 13.3 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Mst1_SARAH PF11629.8 gi|449067494|ref|YP_007434576.1| - 0.1 12.7 0.8 0.33 11.1 0.8 1.8 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 MoCF_biosynth PF00994.24 gi|449067495|ref|YP_007434577.1| - 1.1e-27 96.4 0.0 1.8e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF4261 PF14080.6 gi|449067495|ref|YP_007434577.1| - 0.014 15.4 1.0 0.057 13.5 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4261) VirArc_Nuclease PF12187.8 gi|449067495|ref|YP_007434577.1| - 0.094 12.3 0.4 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 Viral/Archaeal nuclease CotJB PF12652.7 gi|449067495|ref|YP_007434577.1| - 0.1 12.9 0.5 26 5.1 0.0 3.1 2 1 1 3 3 3 0 CotJB protein Hydrolase_4 PF12146.8 gi|449067496|ref|YP_007434578.1| - 8.7e-11 41.5 0.0 1.2e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|449067496|ref|YP_007434578.1| - 2.3e-10 40.5 0.0 0.0003 20.5 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|449067496|ref|YP_007434578.1| - 6e-08 33.6 0.0 7.1e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|449067496|ref|YP_007434578.1| - 0.0023 17.7 0.0 0.33 10.7 0.0 2.1 2 0 0 2 2 2 2 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|449067496|ref|YP_007434578.1| - 0.094 12.3 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.13 gi|449067496|ref|YP_007434578.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Ndr PF03096.14 gi|449067496|ref|YP_007434578.1| - 0.12 11.1 0.0 0.16 10.6 0.0 1.3 1 1 0 1 1 1 0 Ndr family DUF1749 PF08538.10 gi|449067496|ref|YP_007434578.1| - 0.16 11.1 0.0 2.4 7.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) Ser_hydrolase PF06821.13 gi|449067496|ref|YP_007434578.1| - 0.28 11.0 0.0 1.3 8.8 0.0 1.8 2 0 0 2 2 2 0 Serine hydrolase tRNA_synthFbeta PF17759.1 gi|449067497|ref|YP_007434579.1| - 5.8e-33 114.1 0.0 1.3e-32 113.0 0.0 1.5 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|449067497|ref|YP_007434579.1| - 3.2e-19 69.0 0.4 2.1e-16 60.0 0.1 2.8 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|449067497|ref|YP_007434579.1| - 2.4e-14 53.4 0.2 7.7e-14 51.7 0.1 1.9 2 0 0 2 2 2 1 B3/4 domain PhetRS_B1 PF18262.1 gi|449067497|ref|YP_007434579.1| - 0.0035 17.5 0.3 11 6.3 0.0 3.9 2 2 1 3 3 3 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|449067498|ref|YP_007434580.1| - 1.5e-80 270.3 0.0 2e-80 269.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) TrmB PF01978.19 gi|449067498|ref|YP_007434580.1| - 9.8e-08 31.8 2.8 1.3e-06 28.1 0.6 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB tRNA_synthFbeta PF17759.1 gi|449067498|ref|YP_007434580.1| - 1.9e-07 30.8 0.0 6.4e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_34 PF13601.6 gi|449067498|ref|YP_007434580.1| - 4.3e-06 26.8 0.1 1.5e-05 25.1 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|449067498|ref|YP_007434580.1| - 6.4e-06 25.6 0.2 2.1e-05 24.0 0.2 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding tRNA-synt_2 PF00152.20 gi|449067498|ref|YP_007434580.1| - 0.00051 19.2 0.1 0.22 10.6 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_IclR PF09339.10 gi|449067498|ref|YP_007434580.1| - 0.00055 19.7 0.0 0.0014 18.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|449067498|ref|YP_007434580.1| - 0.00056 19.8 0.3 0.0073 16.2 0.1 2.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|449067498|ref|YP_007434580.1| - 0.0048 17.4 0.1 0.063 13.8 0.0 2.9 3 1 1 4 4 4 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|449067498|ref|YP_007434580.1| - 0.0069 16.7 0.4 0.81 10.1 0.0 2.9 3 0 0 3 3 3 1 Penicillinase repressor MarR_2 PF12802.7 gi|449067498|ref|YP_007434580.1| - 0.0078 16.1 2.2 0.024 14.5 0.0 2.9 3 0 0 3 3 3 1 MarR family DUF2250 PF10007.9 gi|449067498|ref|YP_007434580.1| - 0.014 15.5 0.9 0.014 15.5 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Lactamase_B_2 PF12706.7 gi|449067499|ref|YP_007434581.1| - 2.8e-19 69.4 0.0 3.4e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|449067499|ref|YP_007434581.1| - 2.7e-17 63.2 0.0 4.1e-17 62.6 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|449067499|ref|YP_007434581.1| - 6.3e-07 29.6 0.2 1.5e-06 28.4 0.2 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily BDV_P24 PF06595.11 gi|449067499|ref|YP_007434581.1| - 0.057 13.3 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Borna disease virus P24 protein Peptidase_M24 PF00557.24 gi|449067500|ref|YP_007434582.1| - 5.7e-43 147.0 0.0 6.7e-43 146.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 EntA_Immun PF08951.10 gi|449067500|ref|YP_007434582.1| - 0.075 13.4 0.0 22 5.5 0.0 2.4 2 0 0 2 2 2 0 Enterocin A Immunity DUF1512 PF07431.12 gi|449067501|ref|YP_007434583.1| - 1.2e-144 481.7 11.9 1.4e-144 481.5 11.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) HD PF01966.22 gi|449067503|ref|YP_007434585.1| - 4.5e-10 39.8 0.4 2.4e-09 37.4 0.2 2.1 2 0 0 2 2 2 1 HD domain Hydrolase_3 PF08282.12 gi|449067504|ref|YP_007434586.1| - 5.1e-27 95.2 0.4 9.1e-15 55.1 0.1 2.0 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|449067504|ref|YP_007434586.1| - 1.4e-08 35.4 3.3 0.0065 16.9 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449067504|ref|YP_007434586.1| - 8.1e-07 29.5 2.0 0.029 14.7 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|449067504|ref|YP_007434586.1| - 8.9e-07 29.2 0.1 0.0028 17.7 0.0 2.6 2 1 1 3 3 3 2 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|449067504|ref|YP_007434586.1| - 5.3e-06 26.1 0.0 0.0009 18.8 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.6 gi|449067504|ref|YP_007434586.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|449067504|ref|YP_007434586.1| - 0.027 14.6 0.1 0.074 13.2 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase tRNA-synt_1c PF00749.21 gi|449067505|ref|YP_007434587.1| - 2.3e-81 273.1 0.1 1.5e-80 270.5 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|449067505|ref|YP_007434587.1| - 8e-23 81.2 0.0 1.5e-22 80.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Ribosomal_L7Ae PF01248.26 gi|449067506|ref|YP_007434588.1| - 1.7e-33 114.2 1.9 2.1e-33 113.9 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|449067506|ref|YP_007434588.1| - 1.9e-06 27.6 0.1 3e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|449067506|ref|YP_007434588.1| - 0.00051 20.1 0.1 0.00058 19.9 0.1 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 DbpA PF03880.15 gi|449067506|ref|YP_007434588.1| - 0.042 13.8 1.7 0.26 11.3 0.2 2.7 2 1 1 3 3 3 0 DbpA RNA binding domain Sugar_tr PF00083.24 gi|449067507|ref|YP_007434589.1| - 4.4e-47 161.0 21.7 5.5e-47 160.6 21.7 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067507|ref|YP_007434589.1| - 5e-31 107.9 43.9 1.7e-22 79.8 15.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|449067507|ref|YP_007434589.1| - 1.7e-06 26.8 1.8 1.7e-06 26.8 1.8 3.3 3 1 0 3 3 3 1 MFS/sugar transport protein TRI12 PF06609.13 gi|449067507|ref|YP_007434589.1| - 0.00074 18.1 12.4 0.016 13.7 3.4 2.1 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_4 PF06779.14 gi|449067507|ref|YP_007434589.1| - 0.0025 17.2 13.8 0.0037 16.6 3.4 3.4 3 1 1 4 4 4 2 Uncharacterised MFS-type transporter YbfB Aim19 PF10315.9 gi|449067507|ref|YP_007434589.1| - 0.18 12.1 4.5 0.3 11.4 2.1 2.3 2 0 0 2 2 2 0 Altered inheritance of mitochondria protein 19 Phage_holin_3_7 PF05449.11 gi|449067507|ref|YP_007434589.1| - 0.69 10.0 5.6 0.59 10.2 0.2 2.6 2 0 0 2 2 2 0 Putative 3TM holin, Phage_holin_3 HTH_45 PF14947.6 gi|449067508|ref|YP_007434590.1| - 0.00067 19.6 0.3 0.013 15.5 0.1 2.8 2 0 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|449067508|ref|YP_007434590.1| - 0.0013 18.6 0.0 0.0037 17.1 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|449067508|ref|YP_007434590.1| - 0.021 15.3 0.0 0.078 13.5 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma_reg_N PF13800.6 gi|449067508|ref|YP_007434590.1| - 0.053 13.8 0.0 0.2 12.0 0.0 1.9 1 0 0 1 1 1 0 Sigma factor regulator N-terminal TFIIE_alpha PF02002.17 gi|449067508|ref|YP_007434590.1| - 0.077 12.9 0.7 0.47 10.4 0.1 2.6 2 0 0 2 2 2 0 TFIIE alpha subunit AIG1 PF04548.16 gi|449067508|ref|YP_007434590.1| - 0.085 12.2 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 AIG1 family MGDG_synth PF06925.11 gi|449067509|ref|YP_007434591.1| - 0.048 13.8 0.4 0.057 13.5 0.4 1.1 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase Sigma70_r4 PF04545.16 gi|449067510|ref|YP_007434592.1| - 1.3e-05 24.6 0.0 2.7e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|449067510|ref|YP_007434592.1| - 6.5e-05 22.9 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|449067510|ref|YP_007434592.1| - 0.0041 17.4 0.0 0.0059 16.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|449067510|ref|YP_007434592.1| - 0.0066 16.4 0.3 0.018 15.0 0.2 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|449067510|ref|YP_007434592.1| - 0.01 15.5 0.1 0.082 12.6 0.1 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|449067510|ref|YP_007434592.1| - 0.014 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|449067510|ref|YP_007434592.1| - 0.021 14.6 0.0 0.052 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.21 gi|449067510|ref|YP_007434592.1| - 0.022 14.5 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_50 PF18024.1 gi|449067510|ref|YP_007434592.1| - 0.025 14.2 0.2 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Snf7 PF03357.21 gi|449067510|ref|YP_007434592.1| - 0.031 13.9 0.5 0.051 13.2 0.1 1.5 1 1 0 1 1 1 0 Snf7 HTH_26 PF13443.6 gi|449067510|ref|YP_007434592.1| - 0.035 14.5 0.1 0.064 13.7 0.1 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PARP_reg PF02877.14 gi|449067510|ref|YP_007434592.1| - 0.05 13.7 0.2 0.062 13.4 0.2 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain DUF3666 PF12408.8 gi|449067510|ref|YP_007434592.1| - 0.12 11.6 0.1 0.27 10.5 0.1 1.6 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase TAP42 PF04177.12 gi|449067511|ref|YP_007434593.1| - 0.13 11.4 0.1 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 TAP42-like family VWA_3_C PF18571.1 gi|449067512|ref|YP_007434594.1| - 0.071 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 von Willebrand factor type A C-terminal domain REC104 PF17378.2 gi|449067513|ref|YP_007434595.1| - 0.0047 16.8 0.1 0.0051 16.6 0.1 1.0 1 0 0 1 1 1 1 Meiotic recombination protein REC104 RHH_3 PF12651.7 gi|449067513|ref|YP_007434595.1| - 0.045 13.7 0.1 0.5 10.4 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix domain Thermopsin PF05317.11 gi|449067514|ref|YP_007434596.1| - 9.8e-73 244.8 12.2 9.8e-73 244.8 12.2 2.6 2 1 0 2 2 2 1 Thermopsin TAP_C PF03943.13 gi|449067514|ref|YP_007434596.1| - 0.082 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 TAP C-terminal domain Chordopox_E11 PF06138.12 gi|449067514|ref|YP_007434596.1| - 0.11 12.9 0.0 8.4 6.7 0.0 2.8 2 0 0 2 2 2 0 Chordopoxvirus E11 protein DUF11 PF01345.18 gi|449067514|ref|YP_007434596.1| - 0.41 11.0 0.1 0.41 11.0 0.1 3.1 2 1 0 2 2 2 0 Domain of unknown function DUF11 ABC_tran PF00005.27 gi|449067516|ref|YP_007434598.1| - 1.3e-33 116.4 0.0 2.3e-33 115.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067516|ref|YP_007434598.1| - 2.5e-12 47.2 2.6 6.4e-06 26.2 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449067516|ref|YP_007434598.1| - 0.00024 20.6 0.1 0.062 12.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|449067516|ref|YP_007434598.1| - 0.0008 19.2 0.6 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|449067516|ref|YP_007434598.1| - 0.0019 18.6 0.1 0.0066 16.9 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|449067516|ref|YP_007434598.1| - 0.0094 15.6 0.2 0.023 14.3 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|449067516|ref|YP_007434598.1| - 0.01 15.8 0.1 0.019 14.9 0.1 1.8 1 1 0 1 1 1 0 NTPase AAA_18 PF13238.6 gi|449067516|ref|YP_007434598.1| - 0.014 16.0 0.1 0.037 14.6 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|449067516|ref|YP_007434598.1| - 0.031 14.5 0.1 0.063 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|449067516|ref|YP_007434598.1| - 0.033 11.7 0.0 0.045 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_23 PF13476.6 gi|449067516|ref|YP_007434598.1| - 0.035 14.6 1.8 0.07 13.6 1.8 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|449067516|ref|YP_007434598.1| - 0.041 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|449067516|ref|YP_007434598.1| - 0.053 13.9 0.0 0.063 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|449067516|ref|YP_007434598.1| - 0.084 12.6 0.1 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|449067516|ref|YP_007434598.1| - 0.09 13.0 0.1 0.18 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|449067516|ref|YP_007434598.1| - 0.1 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|449067516|ref|YP_007434598.1| - 0.13 12.0 0.1 0.33 10.7 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|449067516|ref|YP_007434598.1| - 0.15 12.1 1.2 0.82 9.7 0.2 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DNA_pol_B PF00136.21 gi|449067517|ref|YP_007434599.1| - 4.7e-55 187.1 6.5 7.6e-55 186.4 6.5 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|449067517|ref|YP_007434599.1| - 7.5e-31 107.5 0.9 7.5e-31 107.5 0.9 2.1 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|449067517|ref|YP_007434599.1| - 2.8e-06 27.4 0.9 3.9e-05 23.7 0.1 3.2 3 1 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|449067517|ref|YP_007434599.1| - 1.5e-05 24.8 0.0 3.3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF2286 PF10051.9 gi|449067518|ref|YP_007434600.1| - 3.9e-52 175.7 3.6 4.7e-52 175.4 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) PDDEXK_10 PF07788.11 gi|449067518|ref|YP_007434600.1| - 0.028 14.4 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DOT1 PF08123.13 gi|449067519|ref|YP_007434601.1| - 3e-08 33.4 0.1 3.8e-07 29.9 0.1 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_31 PF13847.6 gi|449067519|ref|YP_007434601.1| - 6.6e-06 26.0 0.1 1.2e-05 25.2 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067519|ref|YP_007434601.1| - 8.6e-06 26.4 0.0 1.5e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|449067519|ref|YP_007434601.1| - 1.7e-05 24.8 0.1 1.9e-05 24.6 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|449067519|ref|YP_007434601.1| - 4.4e-05 23.0 0.0 5.5e-05 22.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|449067519|ref|YP_007434601.1| - 0.00012 21.7 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|449067519|ref|YP_007434601.1| - 0.00018 21.0 0.1 0.00027 20.5 0.0 1.3 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|449067519|ref|YP_007434601.1| - 0.00086 18.9 0.0 0.00089 18.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.20 gi|449067519|ref|YP_007434601.1| - 0.0013 18.1 0.0 0.0017 17.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|449067519|ref|YP_007434601.1| - 0.0042 16.5 0.0 0.0054 16.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.12 gi|449067519|ref|YP_007434601.1| - 0.005 17.6 0.1 0.012 16.3 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|449067519|ref|YP_007434601.1| - 0.0058 15.9 0.0 0.0074 15.6 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|449067519|ref|YP_007434601.1| - 0.0063 17.1 0.0 0.012 16.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|449067519|ref|YP_007434601.1| - 0.02 14.9 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain TrmK PF04816.12 gi|449067519|ref|YP_007434601.1| - 0.043 13.4 0.1 0.22 11.0 0.0 1.8 1 1 1 2 2 2 0 tRNA (adenine(22)-N(1))-methyltransferase RrnaAD PF00398.20 gi|449067519|ref|YP_007434601.1| - 0.048 12.7 0.1 0.054 12.6 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|449067519|ref|YP_007434601.1| - 0.086 12.4 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Cons_hypoth95 PF03602.15 gi|449067519|ref|YP_007434601.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CDP-OH_P_transf PF01066.21 gi|449067521|ref|YP_007434603.1| - 1.4e-10 41.7 1.7 1.4e-10 41.7 1.7 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Orf78 PF06024.12 gi|449067521|ref|YP_007434603.1| - 4.3 7.7 9.3 0.48 10.7 2.7 2.2 2 0 0 2 2 2 0 Orf78 (ac78) DNA_primase_lrg PF04104.14 gi|449067522|ref|YP_007434604.1| - 1.2e-05 24.9 3.1 0.0012 18.3 0.2 3.1 1 1 1 2 2 2 2 Eukaryotic and archaeal DNA primase, large subunit DUF1456 PF07308.13 gi|449067522|ref|YP_007434604.1| - 0.0047 17.2 1.1 2.7 8.4 0.1 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF1456) SporV_AA PF12164.8 gi|449067522|ref|YP_007434604.1| - 0.32 11.4 4.4 4.4 7.7 0.3 2.9 3 0 0 3 3 3 0 Stage V sporulation protein AA tRNA-synt_1g PF09334.11 gi|449067523|ref|YP_007434605.1| - 1.3e-151 504.9 0.1 1.6e-151 504.6 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|449067523|ref|YP_007434605.1| - 5.5e-11 41.4 0.6 2.9e-05 22.5 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|449067523|ref|YP_007434605.1| - 0.00017 21.6 0.0 0.00034 20.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.7 gi|449067523|ref|YP_007434605.1| - 0.27 11.3 3.7 0.54 10.3 3.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|449067523|ref|YP_007434605.1| - 2.7 7.9 5.1 10 6.0 0.3 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|449067523|ref|YP_007434605.1| - 5.5 6.6 9.2 12 5.4 0.7 2.8 2 1 0 2 2 2 0 zinc-ribbon domain V_ATPase_I PF01496.19 gi|449067524|ref|YP_007434606.1| - 1.6e-30 105.8 12.9 6e-22 77.4 0.0 3.9 4 0 0 4 4 4 3 V-type ATPase 116kDa subunit family DUF3450 PF11932.8 gi|449067524|ref|YP_007434606.1| - 0.04 13.2 0.2 0.069 12.4 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|449067524|ref|YP_007434606.1| - 0.12 12.8 3.4 0.3 11.6 2.0 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF4200 PF13863.6 gi|449067524|ref|YP_007434606.1| - 0.16 12.4 8.2 0.087 13.2 3.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) ATP-synt_F PF01990.17 gi|449067525|ref|YP_007434607.1| - 1.4e-13 51.0 0.4 1.5e-13 50.9 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit MMR_HSR1 PF01926.23 gi|449067525|ref|YP_007434607.1| - 0.013 15.5 0.2 0.016 15.3 0.2 1.1 1 0 0 1 1 1 0 50S ribosome-binding GTPase DRTGG PF07085.12 gi|449067525|ref|YP_007434607.1| - 0.026 14.3 0.1 0.037 13.8 0.1 1.3 1 1 0 1 1 1 0 DRTGG domain vATP-synt_E PF01991.18 gi|449067526|ref|YP_007434608.1| - 4.3e-07 29.5 14.5 2e-06 27.4 14.5 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|449067526|ref|YP_007434608.1| - 0.0073 16.7 4.9 0.013 15.9 4.9 1.4 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit Exotox-A_cataly PF09009.10 gi|449067526|ref|YP_007434608.1| - 0.089 12.5 0.7 0.52 10.1 0.1 2.3 1 1 3 4 4 4 0 Exotoxin A catalytic ETC_C1_NDUFA5 PF04716.14 gi|449067526|ref|YP_007434608.1| - 0.24 11.2 0.0 0.24 11.2 0.0 2.4 3 0 0 3 3 3 0 ETC complex I subunit conserved region SPOUT_MTase PF02590.17 gi|449067526|ref|YP_007434608.1| - 0.53 10.3 4.4 0.57 10.2 3.0 1.9 1 1 1 2 2 2 0 Predicted SPOUT methyltransferase UBN_AB PF14075.6 gi|449067526|ref|YP_007434608.1| - 0.63 9.7 7.7 1.4 8.6 7.7 1.7 1 1 0 1 1 1 0 Ubinuclein conserved middle domain DUF445 PF04286.12 gi|449067526|ref|YP_007434608.1| - 1.5 8.5 10.9 4.2 7.1 10.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF445) ATP-synt_ab PF00006.25 gi|449067527|ref|YP_007434609.1| - 4e-86 288.1 0.0 5.5e-86 287.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|449067527|ref|YP_007434609.1| - 9e-46 154.7 0.1 1.6e-45 153.8 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|449067527|ref|YP_007434609.1| - 1.7e-12 47.7 1.8 1.7e-12 47.7 1.8 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|449067527|ref|YP_007434609.1| - 0.0046 17.2 0.1 0.018 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain Biotin_lipoyl PF00364.22 gi|449067527|ref|YP_007434609.1| - 0.086 12.7 0.1 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 Biotin-requiring enzyme ATP-synt_ab PF00006.25 gi|449067528|ref|YP_007434610.1| - 4.2e-63 212.8 0.0 5.8e-63 212.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|449067528|ref|YP_007434610.1| - 1.2e-11 44.9 0.6 2.3e-11 44.0 0.6 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|449067528|ref|YP_007434610.1| - 0.045 13.9 0.1 0.12 12.6 0.1 1.7 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_D PF01813.17 gi|449067529|ref|YP_007434611.1| - 1.6e-41 142.4 3.5 1.8e-41 142.2 3.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DUF4763 PF15960.5 gi|449067529|ref|YP_007434611.1| - 0.055 12.8 0.2 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) ATP-synt_E_2 PF08112.11 gi|449067530|ref|YP_007434612.1| - 9.9e-16 57.8 8.5 1.1e-15 57.7 8.5 1.0 1 0 0 1 1 1 1 ATP synthase epsilon subunit VASP_tetra PF08776.11 gi|449067530|ref|YP_007434612.1| - 0.00098 18.7 3.1 0.03 13.9 0.2 2.3 2 1 0 2 2 2 2 VASP tetramerisation domain DUF3144 PF11342.8 gi|449067530|ref|YP_007434612.1| - 0.021 15.1 0.3 0.026 14.8 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3144) RapH_N PF18801.1 gi|449067530|ref|YP_007434612.1| - 0.023 14.8 1.0 0.03 14.4 0.6 1.4 1 1 0 1 1 1 0 response regulator aspartate phosphatase H, N terminal KaiA PF07688.12 gi|449067530|ref|YP_007434612.1| - 0.046 13.9 0.7 0.046 13.9 0.7 1.1 1 0 0 1 1 1 0 KaiA C-terminal domain ATP-synt_C PF00137.21 gi|449067531|ref|YP_007434613.1| - 2.4e-14 53.4 20.3 2.4e-14 53.4 20.3 1.8 2 1 0 2 2 2 1 ATP synthase subunit C tRNA-synt_2b PF00587.25 gi|449067532|ref|YP_007434614.1| - 1.1e-25 90.7 0.1 1.7e-25 90.1 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|449067532|ref|YP_007434614.1| - 1e-18 67.2 0.5 2.4e-18 66.0 0.5 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|449067532|ref|YP_007434614.1| - 1.1e-15 57.5 0.5 1.1e-15 57.5 0.5 2.1 3 0 0 3 3 3 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.10 gi|449067532|ref|YP_007434614.1| - 0.033 14.3 0.0 0.12 12.5 0.0 2.0 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2 PF00152.20 gi|449067532|ref|YP_007434614.1| - 0.18 10.8 0.6 0.86 8.6 0.1 2.2 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) Ribosomal_S26e PF01283.19 gi|449067533|ref|YP_007434615.1| - 3.5e-22 78.9 2.5 4e-22 78.7 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e Auto_anti-p27 PF06677.12 gi|449067533|ref|YP_007434615.1| - 0.0073 16.4 5.5 0.16 12.2 0.9 2.3 2 0 0 2 2 2 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf_UBZ PF18439.1 gi|449067533|ref|YP_007434615.1| - 0.043 13.4 0.1 0.087 12.4 0.1 1.5 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger DUF2116 PF09889.9 gi|449067533|ref|YP_007434615.1| - 0.072 13.1 0.6 0.072 13.1 0.6 2.1 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.7 gi|449067533|ref|YP_007434615.1| - 0.21 11.6 4.2 0.8 9.8 4.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.17 gi|449067533|ref|YP_007434615.1| - 0.36 10.8 5.9 0.37 10.8 0.5 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger SOR_SNZ PF01680.17 gi|449067534|ref|YP_007434616.1| - 5e-100 333.5 2.1 6.5e-100 333.1 2.1 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|449067534|ref|YP_007434616.1| - 7.1e-06 25.5 3.8 3.6e-05 23.2 0.0 2.4 3 0 0 3 3 3 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|449067534|ref|YP_007434616.1| - 0.0042 16.3 0.0 0.26 10.4 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|449067534|ref|YP_007434616.1| - 0.0047 16.3 2.3 0.024 14.1 0.0 2.3 2 1 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.17 gi|449067534|ref|YP_007434616.1| - 0.0079 15.3 0.2 1.2 8.1 0.0 2.4 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|449067534|ref|YP_007434616.1| - 0.0099 15.1 0.1 0.16 11.1 0.0 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase OMPdecase PF00215.24 gi|449067534|ref|YP_007434616.1| - 0.013 15.1 0.1 2.9 7.4 0.0 2.5 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TetR_C_27 PF17935.1 gi|449067534|ref|YP_007434616.1| - 0.033 14.2 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain His_biosynth PF00977.21 gi|449067534|ref|YP_007434616.1| - 0.059 12.8 0.6 2.6 7.5 0.1 2.8 2 1 1 3 3 3 0 Histidine biosynthesis protein Peptidase_S66C PF17676.1 gi|449067534|ref|YP_007434616.1| - 0.11 13.1 0.0 0.3 11.6 0.0 1.7 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain SNO PF01174.19 gi|449067535|ref|YP_007434617.1| - 5.4e-48 163.3 0.1 6.1e-48 163.2 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|449067535|ref|YP_007434617.1| - 5.8e-12 45.6 0.2 1.4e-10 41.1 0.2 2.7 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|449067535|ref|YP_007434617.1| - 9.2e-06 25.4 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|449067535|ref|YP_007434617.1| - 1.1e-05 25.3 0.4 0.0001 22.1 0.4 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|449067535|ref|YP_007434617.1| - 0.016 15.0 0.2 0.027 14.3 0.2 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family T2SSE PF00437.20 gi|449067536|ref|YP_007434618.1| - 3.3e-11 42.7 0.0 6.2e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|449067536|ref|YP_007434618.1| - 1.6e-05 25.3 0.0 0.0022 18.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|449067536|ref|YP_007434618.1| - 0.0013 18.5 0.1 0.016 15.0 0.0 2.6 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|449067536|ref|YP_007434618.1| - 0.002 18.4 0.2 0.089 13.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|449067536|ref|YP_007434618.1| - 0.0026 18.3 0.6 0.015 15.9 0.0 2.6 3 1 0 3 3 2 1 AAA domain AAA_25 PF13481.6 gi|449067536|ref|YP_007434618.1| - 0.0036 16.9 0.0 0.0086 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|449067536|ref|YP_007434618.1| - 0.0042 16.4 0.0 0.012 14.9 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_5 PF07728.14 gi|449067536|ref|YP_007434618.1| - 0.0043 17.0 0.1 0.021 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|449067536|ref|YP_007434618.1| - 0.0047 16.7 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 gi|449067536|ref|YP_007434618.1| - 0.0053 16.9 0.0 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|449067536|ref|YP_007434618.1| - 0.0061 17.0 0.0 0.024 15.1 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Lon_C PF05362.13 gi|449067536|ref|YP_007434618.1| - 0.012 15.1 0.1 0.034 13.7 0.0 1.8 1 1 0 1 1 1 0 Lon protease (S16) C-terminal proteolytic domain NACHT PF05729.12 gi|449067536|ref|YP_007434618.1| - 0.013 15.4 0.3 0.054 13.4 0.0 2.1 2 0 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|449067536|ref|YP_007434618.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF4279 PF14106.6 gi|449067536|ref|YP_007434618.1| - 0.024 14.8 0.0 0.27 11.5 0.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4279) AAA_33 PF13671.6 gi|449067536|ref|YP_007434618.1| - 0.039 14.1 0.0 0.11 12.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 gi|449067536|ref|YP_007434618.1| - 0.04 13.8 0.1 0.21 11.5 0.0 2.3 2 0 0 2 2 2 0 NTPase Sigma54_activat PF00158.26 gi|449067536|ref|YP_007434618.1| - 0.046 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_28 PF13521.6 gi|449067536|ref|YP_007434618.1| - 0.048 13.9 0.0 0.14 12.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|449067536|ref|YP_007434618.1| - 0.049 12.9 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|449067536|ref|YP_007434618.1| - 0.055 13.2 0.7 0.13 12.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|449067536|ref|YP_007434618.1| - 0.082 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|449067536|ref|YP_007434618.1| - 0.095 13.0 0.2 0.36 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|449067536|ref|YP_007434618.1| - 0.11 12.3 0.2 0.26 11.0 0.1 1.7 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.21 gi|449067536|ref|YP_007434618.1| - 0.13 11.6 0.0 0.37 10.1 0.0 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PNK3P PF08645.11 gi|449067536|ref|YP_007434618.1| - 0.13 11.9 0.7 13 5.5 0.0 2.8 2 1 0 2 2 2 0 Polynucleotide kinase 3 phosphatase AAA_30 PF13604.6 gi|449067536|ref|YP_007434618.1| - 0.14 11.8 0.0 0.81 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|449067536|ref|YP_007434618.1| - 0.14 12.5 0.0 0.43 11.0 0.0 1.9 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|449067536|ref|YP_007434618.1| - 0.15 11.4 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Hjc PF01870.18 gi|449067537|ref|YP_007434619.1| - 4e-28 97.2 0.1 5.3e-28 96.9 0.1 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|449067537|ref|YP_007434619.1| - 0.00012 21.7 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 REase_AHJR-like IlvN PF07991.12 gi|449067538|ref|YP_007434620.1| - 9.4e-71 236.7 0.0 1.5e-70 236.0 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|449067538|ref|YP_007434620.1| - 1.5e-54 184.2 1.4 8.6e-54 181.7 2.7 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|449067538|ref|YP_007434620.1| - 2.4e-06 28.0 0.0 1.1e-05 25.9 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|449067538|ref|YP_007434620.1| - 3e-06 26.7 0.0 5.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|449067538|ref|YP_007434620.1| - 2.9e-05 24.3 0.0 0.00012 22.3 0.0 2.0 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|449067538|ref|YP_007434620.1| - 5e-05 23.4 0.0 0.00025 21.1 0.0 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|449067538|ref|YP_007434620.1| - 0.026 14.5 0.0 4.6 7.2 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Oxidored_nitro PF00148.19 gi|449067538|ref|YP_007434620.1| - 0.044 12.5 0.0 0.35 9.6 0.0 2.3 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.16 gi|449067538|ref|YP_007434620.1| - 0.12 12.0 0.1 0.25 11.0 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT_5 PF13710.6 gi|449067539|ref|YP_007434621.1| - 3.3e-06 26.9 0.0 5.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 gi|449067540|ref|YP_007434622.1| - 7.9e-55 185.1 0.0 3.3e-53 179.8 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449067540|ref|YP_007434622.1| - 4.3e-47 159.7 0.0 3.6e-45 153.5 0.0 2.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|449067540|ref|YP_007434622.1| - 4.5e-38 130.1 0.0 1e-37 129.0 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|449067540|ref|YP_007434622.1| - 0.00023 21.0 0.0 0.00046 20.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Acid_PPase PF12689.7 gi|449067541|ref|YP_007434623.1| - 5.9e-12 45.8 0.1 9e-12 45.2 0.1 1.3 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.6 gi|449067541|ref|YP_007434623.1| - 1.8e-08 34.7 0.1 1.8e-08 34.7 0.1 2.0 2 1 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|449067541|ref|YP_007434623.1| - 7.2e-06 26.4 0.0 0.0041 17.4 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|449067541|ref|YP_007434623.1| - 0.0026 17.3 0.3 0.085 12.3 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2608) PRD PF00874.20 gi|449067541|ref|YP_007434623.1| - 0.34 11.2 4.4 1.9 8.9 0.4 2.8 3 0 0 3 3 3 0 PRD domain MMR_HSR1 PF01926.23 gi|449067542|ref|YP_007434624.1| - 1.4e-15 57.4 0.4 5e-12 45.9 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|449067542|ref|YP_007434624.1| - 2.4e-12 47.1 0.0 4.1e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|449067542|ref|YP_007434624.1| - 3.2e-09 36.5 0.2 0.00015 21.3 0.2 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|449067542|ref|YP_007434624.1| - 3.1e-05 24.1 0.5 0.023 14.8 0.0 2.7 2 1 0 2 2 2 2 Dynamin family Roc PF08477.13 gi|449067542|ref|YP_007434624.1| - 0.00046 20.4 0.0 0.041 14.1 0.0 2.4 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|449067542|ref|YP_007434624.1| - 0.006 16.6 0.8 0.01 15.8 0.2 1.7 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain 6PF2K PF01591.18 gi|449067542|ref|YP_007434624.1| - 0.014 14.7 1.3 12 5.1 0.0 3.3 2 1 0 3 3 3 0 6-phosphofructo-2-kinase PduV-EutP PF10662.9 gi|449067542|ref|YP_007434624.1| - 0.016 14.9 0.1 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|449067542|ref|YP_007434624.1| - 0.02 14.4 0.3 0.55 9.7 0.0 2.2 1 1 1 2 2 2 0 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|449067542|ref|YP_007434624.1| - 0.036 13.6 0.1 0.3 10.6 0.0 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_18 PF13238.6 gi|449067542|ref|YP_007434624.1| - 0.05 14.1 0.1 0.24 11.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|449067542|ref|YP_007434624.1| - 0.23 11.1 0.4 0.55 9.8 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CARDB PF07705.11 gi|449067543|ref|YP_007434625.1| - 0.014 15.6 0.3 0.34 11.2 0.1 2.4 2 0 0 2 2 2 0 CARDB Phlebovirus_NSM PF07246.11 gi|449067543|ref|YP_007434625.1| - 0.078 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M PilZ PF07238.14 gi|449067543|ref|YP_007434625.1| - 0.11 12.9 0.1 0.36 11.1 0.0 2.0 2 0 0 2 2 2 0 PilZ domain UbiA PF01040.18 gi|449067544|ref|YP_007434626.1| - 2.9e-43 148.0 14.7 3.4e-43 147.8 14.7 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Pyr_redox_2 PF07992.14 gi|449067546|ref|YP_007434628.1| - 0.017 14.3 0.1 0.025 13.8 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|449067546|ref|YP_007434628.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein AdoMet_dc PF02675.15 gi|449067547|ref|YP_007434629.1| - 7.1e-33 113.0 0.1 7.9e-33 112.9 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF211 PF02680.14 gi|449067548|ref|YP_007434630.1| - 2.1e-36 123.9 5.2 2.4e-36 123.8 5.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 ATP_bind_3 PF01171.20 gi|449067549|ref|YP_007434631.1| - 4.9e-08 32.9 0.0 7.3e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|449067549|ref|YP_007434631.1| - 0.0047 16.1 0.0 0.0061 15.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase DUF2024 PF09630.10 gi|449067549|ref|YP_007434631.1| - 0.02 14.7 0.0 0.76 9.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2024) Cob_adeno_trans PF01923.18 gi|449067550|ref|YP_007434632.1| - 3.9e-48 163.7 0.0 4.5e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase MIEAP PF16026.5 gi|449067550|ref|YP_007434632.1| - 0.036 14.3 0.1 0.1 12.8 0.1 1.6 1 1 0 1 1 1 0 Mitochondria-eating protein Spectrin PF00435.21 gi|449067550|ref|YP_007434632.1| - 0.043 14.3 0.4 0.52 10.8 0.1 2.3 2 0 0 2 2 2 0 Spectrin repeat HAUS-augmin3 PF14932.6 gi|449067550|ref|YP_007434632.1| - 0.075 12.6 0.6 0.12 12.0 0.1 1.5 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 tRNA-synt_1 PF00133.22 gi|449067551|ref|YP_007434633.1| - 4.8e-52 177.0 0.0 2.4e-51 174.7 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|449067551|ref|YP_007434633.1| - 3.1e-20 72.7 0.3 6.7e-20 71.6 0.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|449067551|ref|YP_007434633.1| - 3.2e-12 46.3 0.1 7.2e-12 45.2 0.1 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|449067551|ref|YP_007434633.1| - 8.7e-12 44.5 0.1 4.8e-10 38.7 0.1 3.0 2 1 1 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|449067551|ref|YP_007434633.1| - 9.5e-09 35.0 0.0 2.3e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|449067551|ref|YP_007434633.1| - 0.024 13.6 0.0 0.06 12.3 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class I (K) DUF4116 PF13475.6 gi|449067551|ref|YP_007434633.1| - 0.054 13.2 0.0 0.28 11.0 0.0 2.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) SBDS_C PF09377.10 gi|449067551|ref|YP_007434633.1| - 0.16 11.9 0.5 3 7.9 0.0 3.2 4 1 0 4 4 4 0 SBDS protein C-terminal domain DUF2303 PF10065.9 gi|449067552|ref|YP_007434634.1| - 0.018 14.2 0.0 0.056 12.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2303) Penicillinase_R PF03965.16 gi|449067552|ref|YP_007434634.1| - 0.03 14.7 0.2 0.06 13.7 0.1 1.6 2 0 0 2 2 2 0 Penicillinase repressor DUF3723 PF12520.8 gi|449067552|ref|YP_007434634.1| - 0.032 12.9 0.1 0.041 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3723) HrcA_DNA-bdg PF03444.15 gi|449067552|ref|YP_007434634.1| - 0.054 13.2 1.6 0.082 12.6 0.4 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF4777 PF16007.5 gi|449067552|ref|YP_007434634.1| - 0.068 13.4 0.5 0.33 11.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) Phage_min_cap2 PF06152.11 gi|449067552|ref|YP_007434634.1| - 0.17 10.8 2.2 0.14 11.0 0.4 1.7 2 0 0 2 2 2 0 Phage minor capsid protein 2 Aminotran_1_2 PF00155.21 gi|449067553|ref|YP_007434635.1| - 3.3e-42 145.0 0.0 3.9e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Tax PF02959.16 gi|449067553|ref|YP_007434635.1| - 0.011 15.3 0.1 0.018 14.5 0.1 1.3 1 0 0 1 1 1 0 HTLV Tax HisG PF01634.18 gi|449067554|ref|YP_007434636.1| - 6.9e-48 162.6 0.1 1e-47 162.0 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|449067554|ref|YP_007434636.1| - 5.7e-19 68.0 2.6 9.9e-19 67.3 0.3 2.4 3 0 0 3 3 3 1 HisG, C-terminal domain DUF2100 PF09873.9 gi|449067554|ref|YP_007434636.1| - 0.069 13.0 1.4 0.096 12.5 1.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2100) His_biosynth PF00977.21 gi|449067555|ref|YP_007434637.1| - 4.4e-41 140.8 2.0 4.9e-41 140.7 2.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|449067555|ref|YP_007434637.1| - 0.00046 19.7 0.9 0.011 15.3 0.1 2.1 2 0 0 2 2 2 2 PcrB family IGPD PF00475.18 gi|449067556|ref|YP_007434638.1| - 1.5e-49 168.0 0.2 2.1e-49 167.5 0.2 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|449067557|ref|YP_007434639.1| - 6.7e-83 277.6 5.8 7.6e-83 277.5 5.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|449067557|ref|YP_007434639.1| - 7.1e-07 28.9 2.8 0.0043 16.5 0.2 2.2 1 1 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|449067557|ref|YP_007434639.1| - 8.3e-05 22.0 2.2 0.00049 19.5 0.3 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|449067557|ref|YP_007434639.1| - 0.00024 20.5 0.4 0.18 11.1 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|449067557|ref|YP_007434639.1| - 0.00071 19.0 1.0 0.0091 15.4 0.2 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Dus PF01207.17 gi|449067557|ref|YP_007434639.1| - 0.001 18.3 0.3 0.18 10.8 0.1 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|449067557|ref|YP_007434639.1| - 0.066 12.4 2.3 0.8 8.9 0.2 2.2 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Histidinol_dh PF00815.20 gi|449067558|ref|YP_007434640.1| - 2.4e-124 415.5 0.1 1.7e-123 412.7 0.1 1.8 1 1 0 1 1 1 1 Histidinol dehydrogenase PRA-PH PF01503.17 gi|449067559|ref|YP_007434641.1| - 1.5e-13 51.0 0.2 1.7e-13 50.8 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Chordopox_L2 PF05803.12 gi|449067559|ref|YP_007434641.1| - 0.08 12.8 0.1 0.24 11.3 0.1 1.8 1 1 1 2 2 2 0 Chordopoxvirus L2 protein GATase PF00117.28 gi|449067560|ref|YP_007434642.1| - 2.9e-20 72.9 0.0 3.6e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|449067560|ref|YP_007434642.1| - 0.022 14.4 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|449067560|ref|YP_007434642.1| - 0.25 11.0 0.5 0.81 9.4 0.5 1.7 1 1 0 1 1 1 0 Peptidase C26 PRA-CH PF01502.18 gi|449067561|ref|YP_007434643.1| - 1.2e-30 105.1 0.2 1.9e-30 104.5 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase FeS_assembly_P PF01883.19 gi|449067562|ref|YP_007434644.1| - 7.9e-20 70.8 0.3 1e-19 70.4 0.3 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein YqhG PF11079.8 gi|449067562|ref|YP_007434644.1| - 0.061 12.3 0.0 0.13 11.2 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein YqhG of unknown function NifU PF01106.17 gi|449067562|ref|YP_007434644.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 NifU-like domain HTH_34 PF13601.6 gi|449067562|ref|YP_007434644.1| - 0.17 12.1 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain tRNA-synt_2b PF00587.25 gi|449067563|ref|YP_007434645.1| - 9.9e-39 133.1 0.0 2e-38 132.1 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|449067563|ref|YP_007434645.1| - 1.5e-24 86.3 12.0 2.9e-24 85.4 12.0 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|449067563|ref|YP_007434645.1| - 0.03 12.9 1.5 0.051 12.2 1.5 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Nup88 PF10168.9 gi|449067563|ref|YP_007434645.1| - 3.2 5.4 7.6 4.5 5.0 7.6 1.1 1 0 0 1 1 1 0 Nuclear pore component APG6_N PF17675.1 gi|449067563|ref|YP_007434645.1| - 6.3 7.3 12.6 24 5.5 12.6 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region YkyA PF10368.9 gi|449067563|ref|YP_007434645.1| - 6.7 6.3 15.4 0.22 11.2 9.0 1.7 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein Radical_SAM PF04055.21 gi|449067564|ref|YP_007434646.1| - 1.1e-16 61.7 0.0 5.8e-16 59.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|449067564|ref|YP_007434646.1| - 0.13 12.3 0.0 3.5 7.7 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain AsnC_trans_reg PF01037.21 gi|449067567|ref|YP_007434649.1| - 3.9e-19 68.4 0.3 5.8e-19 67.8 0.3 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|449067567|ref|YP_007434649.1| - 1.5e-13 50.0 3.1 8.7e-13 47.6 0.6 2.4 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|449067567|ref|YP_007434649.1| - 9.9e-11 41.3 0.9 4.4e-10 39.2 1.5 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|449067567|ref|YP_007434649.1| - 3.7e-06 26.8 0.0 6.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|449067567|ref|YP_007434649.1| - 0.0008 19.0 0.1 0.0012 18.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|449067567|ref|YP_007434649.1| - 0.0015 18.7 0.1 0.0029 17.8 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|449067567|ref|YP_007434649.1| - 0.0017 18.2 0.1 0.0029 17.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|449067567|ref|YP_007434649.1| - 0.0021 17.8 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|449067567|ref|YP_007434649.1| - 0.0042 16.9 0.1 0.0083 16.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_50 PF18024.1 gi|449067567|ref|YP_007434649.1| - 0.0053 16.3 0.1 0.022 14.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|449067567|ref|YP_007434649.1| - 0.0059 16.4 0.3 0.01 15.6 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family MarR PF01047.22 gi|449067567|ref|YP_007434649.1| - 0.0064 16.4 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|449067567|ref|YP_007434649.1| - 0.0072 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|449067567|ref|YP_007434649.1| - 0.0078 15.9 0.1 0.02 14.6 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|449067567|ref|YP_007434649.1| - 0.0099 16.2 0.1 0.02 15.3 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|449067567|ref|YP_007434649.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PCI PF01399.27 gi|449067567|ref|YP_007434649.1| - 0.012 16.1 0.2 0.037 14.5 0.1 1.8 2 0 0 2 2 2 0 PCI domain HTH_Mga PF08280.11 gi|449067567|ref|YP_007434649.1| - 0.015 15.3 0.1 0.03 14.3 0.1 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_IclR PF09339.10 gi|449067567|ref|YP_007434649.1| - 0.016 15.0 0.1 0.024 14.4 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|449067567|ref|YP_007434649.1| - 0.017 14.9 0.1 0.034 13.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|449067567|ref|YP_007434649.1| - 0.035 14.2 0.0 0.059 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|449067567|ref|YP_007434649.1| - 0.045 13.8 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_30 PF13556.6 gi|449067567|ref|YP_007434649.1| - 0.046 13.5 0.1 0.076 12.8 0.1 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|449067567|ref|YP_007434649.1| - 0.063 13.3 0.1 0.099 12.6 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mga PF05043.13 gi|449067567|ref|YP_007434649.1| - 0.065 13.8 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|449067567|ref|YP_007434649.1| - 0.083 12.7 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_7 PF02796.15 gi|449067567|ref|YP_007434649.1| - 0.11 12.5 0.0 0.38 10.9 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase HTH_9 PF08221.11 gi|449067567|ref|YP_007434649.1| - 0.13 12.3 0.2 0.29 11.2 0.1 1.6 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarC PF01914.17 gi|449067568|ref|YP_007434650.1| - 2e-30 105.7 14.4 2.6e-30 105.4 14.4 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Phage_holin_3_1 PF05106.12 gi|449067568|ref|YP_007434650.1| - 0.22 12.0 0.1 0.22 12.0 0.1 1.9 2 0 0 2 2 2 0 Phage holin family (Lysis protein S) DUF4233 PF14017.6 gi|449067568|ref|YP_007434650.1| - 0.77 10.1 9.6 0.074 13.4 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) DUF3087 PF11286.8 gi|449067568|ref|YP_007434650.1| - 3.4 7.1 5.5 3.7 7.0 0.6 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3087) Spc7 PF08317.11 gi|449067569|ref|YP_007434651.1| - 0.00055 18.9 2.3 0.0006 18.8 2.3 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Cast PF10174.9 gi|449067569|ref|YP_007434651.1| - 0.00075 17.9 4.5 0.00084 17.7 4.5 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Occludin_ELL PF07303.13 gi|449067569|ref|YP_007434651.1| - 0.011 16.4 1.5 0.019 15.7 1.2 1.5 1 1 0 1 1 1 0 Occludin homology domain Bacillus_HBL PF05791.11 gi|449067569|ref|YP_007434651.1| - 0.04 13.7 0.8 0.058 13.2 0.7 1.3 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) YfiO PF13525.6 gi|449067569|ref|YP_007434651.1| - 0.089 12.5 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 Outer membrane lipoprotein PP_M1 PF03012.14 gi|449067569|ref|YP_007434651.1| - 0.09 12.3 1.7 0.11 12.0 1.7 1.1 1 0 0 1 1 1 0 Phosphoprotein DHO_dh PF01180.21 gi|449067571|ref|YP_007434653.1| - 3.1e-45 154.7 0.5 3.9e-45 154.3 0.5 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|449067571|ref|YP_007434653.1| - 0.15 11.0 0.1 0.27 10.2 0.1 1.4 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Amidohydro_1 PF01979.20 gi|449067572|ref|YP_007434654.1| - 3.7e-14 52.8 0.0 4.2e-08 32.9 0.0 2.1 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|449067572|ref|YP_007434654.1| - 0.00014 21.5 0.0 0.0018 17.8 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase family DHODB_Fe-S_bind PF10418.9 gi|449067573|ref|YP_007434655.1| - 0.0063 16.3 3.9 0.013 15.3 3.9 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B PyrI PF01948.18 gi|449067574|ref|YP_007434656.1| - 1.9e-33 114.6 4.0 5.8e-33 113.0 4.6 1.5 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|449067574|ref|YP_007434656.1| - 9.5e-16 57.4 3.0 1.7e-15 56.6 3.0 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain TF_Zn_Ribbon PF08271.12 gi|449067574|ref|YP_007434656.1| - 0.74 9.4 4.0 2.4 7.7 4.0 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding OTCace_N PF02729.21 gi|449067575|ref|YP_007434657.1| - 3.3e-41 140.8 0.0 6.4e-41 139.8 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|449067575|ref|YP_007434657.1| - 5.6e-25 88.3 0.0 9.7e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pribosyltran PF00156.27 gi|449067576|ref|YP_007434658.1| - 3.5e-22 78.6 0.8 5.2e-22 78.1 0.8 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|449067576|ref|YP_007434658.1| - 0.00032 20.2 0.0 0.00043 19.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|449067576|ref|YP_007434658.1| - 0.031 13.8 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase OMPdecase PF00215.24 gi|449067577|ref|YP_007434659.1| - 5.7e-20 71.9 0.0 7.7e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Josephin PF02099.17 gi|449067578|ref|YP_007434660.1| - 0.091 12.9 0.4 0.13 12.3 0.4 1.5 1 1 0 1 1 1 0 Josephin Prok-JAB PF14464.6 gi|449067578|ref|YP_007434660.1| - 0.14 11.9 0.1 0.27 11.0 0.1 1.5 1 1 0 1 1 1 0 Prokaryotic homologs of the JAB domain PhoU PF01895.19 gi|449067579|ref|YP_007434661.1| - 2.4e-19 69.6 6.7 2.2e-16 60.1 0.4 2.7 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|449067579|ref|YP_007434661.1| - 1.6e-10 40.7 0.1 5.5e-10 38.9 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF192 PF02643.15 gi|449067579|ref|YP_007434661.1| - 0.011 15.8 0.0 0.055 13.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized ACR, COG1430 DUF600 PF04634.12 gi|449067579|ref|YP_007434661.1| - 0.083 12.9 0.4 0.16 12.1 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF600 DUF2106 PF09879.9 gi|449067580|ref|YP_007434662.1| - 0.0024 17.4 0.1 0.004 16.7 0.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) TYW3 PF02676.14 gi|449067582|ref|YP_007434664.1| - 1.3e-30 106.3 0.0 2.5e-30 105.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase TYW3 Fer4_14 PF13394.6 gi|449067583|ref|YP_007434665.1| - 7.1e-14 52.0 0.1 1.2e-13 51.2 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|449067583|ref|YP_007434665.1| - 1.4e-12 48.3 0.0 2.8e-12 47.3 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|449067583|ref|YP_007434665.1| - 1.1e-09 38.6 0.0 1.7e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SIR2 PF02146.17 gi|449067583|ref|YP_007434665.1| - 0.071 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Sir2 family NTP_transf_5 PF14907.6 gi|449067583|ref|YP_007434665.1| - 0.11 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised nucleotidyltransferase Staufen_C PF16482.5 gi|449067583|ref|YP_007434665.1| - 0.21 11.7 0.1 0.57 10.4 0.0 1.7 2 0 0 2 2 2 0 Staufen C-terminal domain NOG1_N PF17835.1 gi|449067584|ref|YP_007434666.1| - 9.2e-31 107.0 1.2 9.2e-31 107.0 1.2 1.6 2 0 0 2 2 2 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|449067584|ref|YP_007434666.1| - 4.8e-18 65.3 0.1 1.1e-17 64.1 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|449067584|ref|YP_007434666.1| - 2.6e-17 62.3 0.4 1.3e-16 60.1 0.1 2.2 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|449067584|ref|YP_007434666.1| - 7e-15 54.9 0.5 1e-14 54.4 0.5 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|449067584|ref|YP_007434666.1| - 3.6e-06 27.2 1.4 0.00012 22.2 0.1 2.5 1 1 1 2 2 2 1 Dynamin family PduV-EutP PF10662.9 gi|449067584|ref|YP_007434666.1| - 9.6e-06 25.4 0.3 2.5e-05 24.1 0.3 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|449067584|ref|YP_007434666.1| - 4.9e-05 23.3 1.7 0.045 13.7 0.2 2.6 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|449067584|ref|YP_007434666.1| - 6e-05 22.7 0.1 0.0052 16.3 0.1 2.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|449067584|ref|YP_007434666.1| - 0.00069 19.6 0.3 0.0019 18.2 0.3 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain DnaB_C PF03796.15 gi|449067584|ref|YP_007434666.1| - 0.0028 17.1 0.1 0.023 14.0 0.1 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AIG1 PF04548.16 gi|449067584|ref|YP_007434666.1| - 0.0054 16.1 0.1 0.0091 15.3 0.1 1.5 1 0 0 1 1 1 1 AIG1 family AAA_18 PF13238.6 gi|449067584|ref|YP_007434666.1| - 0.02 15.5 0.0 0.056 14.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|449067584|ref|YP_007434666.1| - 0.024 14.5 0.3 0.4 10.6 0.0 2.5 2 0 0 2 2 2 0 NTPase Ras PF00071.22 gi|449067584|ref|YP_007434666.1| - 0.025 14.2 0.1 0.08 12.5 0.1 1.8 1 1 0 1 1 1 0 Ras family ATP_bind_1 PF03029.17 gi|449067584|ref|YP_007434666.1| - 0.03 14.1 0.1 6.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|449067584|ref|YP_007434666.1| - 0.037 14.4 0.0 0.15 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Roc PF08477.13 gi|449067584|ref|YP_007434666.1| - 0.14 12.3 0.1 1.7 8.9 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase RecG_N PF17190.4 gi|449067584|ref|YP_007434666.1| - 2.2 9.0 9.0 5.1 7.9 0.1 3.8 3 1 1 4 4 4 0 RecG N-terminal helical domain tRNA_bind PF01588.20 gi|449067585|ref|YP_007434667.1| - 1.4e-29 102.1 0.2 1.6e-29 101.9 0.2 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain SAICAR_synt PF01259.18 gi|449067586|ref|YP_007434668.1| - 3.9e-56 190.5 0.6 4.7e-56 190.2 0.6 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 gi|449067587|ref|YP_007434669.1| - 6.2e-20 71.2 0.4 6.9e-20 71.0 0.4 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.6 gi|449067588|ref|YP_007434670.1| - 6.9e-43 146.6 0.0 8.4e-43 146.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|449067588|ref|YP_007434670.1| - 1.8e-09 37.6 0.0 2.8e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|449067588|ref|YP_007434670.1| - 1.4e-08 34.6 0.1 3.1e-08 33.5 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|449067588|ref|YP_007434670.1| - 2e-06 27.7 0.0 3.5e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I AIRS_C PF02769.22 gi|449067589|ref|YP_007434671.1| - 2.9e-39 134.7 0.6 5.1e-28 98.2 0.4 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|449067589|ref|YP_007434671.1| - 4.7e-38 129.7 0.1 2e-18 66.8 0.1 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|449067589|ref|YP_007434671.1| - 3.4e-09 37.1 0.3 6.9e-09 36.1 0.3 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_7 PF13537.6 gi|449067590|ref|YP_007434672.1| - 1.2e-10 41.3 0.0 1e-09 38.4 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|449067590|ref|YP_007434672.1| - 4.3e-10 39.9 0.0 1e-09 38.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|449067590|ref|YP_007434672.1| - 1.4e-09 37.6 0.2 2.8e-09 36.7 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|449067590|ref|YP_007434672.1| - 0.14 11.6 0.1 0.25 10.8 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Pribosyltran PF00156.27 gi|449067591|ref|YP_007434673.1| - 5.5e-08 32.5 0.4 2.2e-07 30.5 0.4 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_7 PF13537.6 gi|449067591|ref|YP_007434673.1| - 0.0041 17.0 0.0 0.01 15.7 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain PRTase_2 PF15609.6 gi|449067591|ref|YP_007434673.1| - 0.024 14.1 0.0 0.051 13.1 0.0 1.4 2 0 0 2 2 2 0 Phosphoribosyl transferase DUF3660 PF12398.8 gi|449067591|ref|YP_007434673.1| - 0.18 11.9 1.2 8.4 6.5 0.0 2.9 3 0 0 3 3 3 0 Receptor serine/threonine kinase GARS_A PF01071.19 gi|449067592|ref|YP_007434674.1| - 1.8e-38 132.3 0.0 3.2e-38 131.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|449067592|ref|YP_007434674.1| - 2.7e-20 73.0 0.1 5.5e-20 72.0 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|449067592|ref|YP_007434674.1| - 2e-06 28.0 0.0 5.7e-06 26.5 0.0 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain CPSase_L_D2 PF02786.17 gi|449067592|ref|YP_007434674.1| - 0.00011 21.7 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|449067592|ref|YP_007434674.1| - 0.0003 20.1 0.0 0.00083 18.7 0.0 1.6 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|449067592|ref|YP_007434674.1| - 0.00046 19.8 0.0 0.0029 17.2 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|449067592|ref|YP_007434674.1| - 0.14 11.7 0.2 0.42 10.1 0.2 1.8 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus AIRS_C PF02769.22 gi|449067593|ref|YP_007434675.1| - 5e-26 91.7 0.0 7.8e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|449067593|ref|YP_007434675.1| - 1.8e-17 63.8 1.4 3.1e-17 63.0 1.4 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain OrsD PF12013.8 gi|449067594|ref|YP_007434676.1| - 0.0032 17.9 0.1 0.0059 17.1 0.1 1.4 1 0 0 1 1 1 1 Orsellinic acid/F9775 biosynthesis cluster protein D TCTP PF00838.17 gi|449067594|ref|YP_007434676.1| - 0.0071 16.7 1.2 0.37 11.1 1.0 2.1 1 1 1 2 2 2 1 Translationally controlled tumour protein zf_UBZ PF18439.1 gi|449067594|ref|YP_007434676.1| - 0.049 13.2 0.2 0.081 12.5 0.2 1.4 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger PapB PF03333.13 gi|449067594|ref|YP_007434676.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein DUF4120 PF13496.6 gi|449067594|ref|YP_007434676.1| - 0.097 13.0 0.1 0.2 12.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4120) RHH_1 PF01402.21 gi|449067595|ref|YP_007434677.1| - 0.00042 20.1 0.0 0.00052 19.9 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|449067595|ref|YP_007434677.1| - 0.026 14.6 0.0 0.034 14.3 0.0 1.2 1 1 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Arginosuc_synth PF00764.19 gi|449067596|ref|YP_007434678.1| - 1.1e-139 466.1 0.1 1.2e-139 465.9 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|449067596|ref|YP_007434678.1| - 0.00023 20.7 0.2 0.00048 19.7 0.2 1.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Phage_30_8 PF06019.11 gi|449067596|ref|YP_007434678.1| - 0.014 15.4 0.3 0.58 10.1 0.1 2.4 2 0 0 2 2 2 0 Phage GP30.8 protein PAPS_reduct PF01507.19 gi|449067596|ref|YP_007434678.1| - 0.029 14.4 0.0 0.083 12.9 0.0 1.8 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Lyase_1 PF00206.20 gi|449067597|ref|YP_007434679.1| - 3.8e-40 138.2 0.0 8.1e-40 137.1 0.0 1.6 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|449067597|ref|YP_007434679.1| - 0.0024 18.6 0.0 0.0073 17.0 0.0 1.8 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal CPSase_sm_chain PF00988.22 gi|449067598|ref|YP_007434680.1| - 2.6e-46 156.6 0.0 4e-46 156.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|449067598|ref|YP_007434680.1| - 6.7e-40 136.9 0.0 1e-39 136.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449067598|ref|YP_007434680.1| - 1.9e-06 27.8 1.1 0.001 18.9 0.1 2.2 1 1 1 2 2 2 2 Peptidase C26 CPSase_L_D2 PF02786.17 gi|449067599|ref|YP_007434681.1| - 1.3e-97 325.4 0.0 6.8e-66 221.8 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|449067599|ref|YP_007434681.1| - 3.1e-34 117.9 0.2 1.1e-33 116.2 0.2 2.0 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|449067599|ref|YP_007434681.1| - 2.5e-20 72.7 0.0 2e-09 37.2 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|449067599|ref|YP_007434681.1| - 1.2e-14 54.3 0.1 1.2e-07 31.5 0.1 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|449067599|ref|YP_007434681.1| - 5e-13 48.9 0.0 2.3e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|449067599|ref|YP_007434681.1| - 1.2e-08 35.1 0.2 0.00039 20.5 0.1 3.2 2 1 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|449067599|ref|YP_007434681.1| - 3.4e-06 26.7 0.1 0.0083 15.6 0.0 3.1 2 1 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|449067599|ref|YP_007434681.1| - 9.7e-05 22.0 0.0 0.0046 16.6 0.0 2.9 3 0 0 3 3 3 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|449067599|ref|YP_007434681.1| - 0.0002 21.2 0.1 0.01 15.6 0.1 2.8 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_2 PF08442.10 gi|449067599|ref|YP_007434681.1| - 0.0079 15.8 0.0 0.26 10.8 0.0 3.2 4 0 0 4 4 4 1 ATP-grasp domain Epimerase PF01370.21 gi|449067599|ref|YP_007434681.1| - 0.06 12.8 0.0 3.3 7.1 0.0 2.4 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family RimK PF08443.11 gi|449067600|ref|YP_007434682.1| - 6.8e-26 91.0 0.0 1.1e-25 90.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|449067600|ref|YP_007434682.1| - 8.6e-08 31.8 0.0 1.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|449067600|ref|YP_007434682.1| - 9e-07 29.1 0.0 1.8e-06 28.1 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|449067600|ref|YP_007434682.1| - 0.015 14.6 0.0 0.14 11.4 0.0 2.1 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|449067600|ref|YP_007434682.1| - 0.025 14.1 0.1 0.084 12.4 0.1 1.9 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus Translin PF01997.16 gi|449067601|ref|YP_007434683.1| - 1.7e-09 38.0 2.2 2.8e-07 30.7 2.2 2.1 1 1 0 1 1 1 1 Translin family Coat_F PF07875.12 gi|449067601|ref|YP_007434683.1| - 0.0087 16.3 1.0 1.6 9.1 0.3 2.4 2 0 0 2 2 2 2 Coat F domain TPR_2 PF07719.17 gi|449067601|ref|YP_007434683.1| - 1.2 9.5 5.8 5.2 7.4 0.4 3.1 2 1 0 2 2 2 0 Tetratricopeptide repeat 3HCDH_N PF02737.18 gi|449067602|ref|YP_007434684.1| - 1.6e-49 168.2 0.0 2.6e-49 167.5 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|449067602|ref|YP_007434684.1| - 2e-17 63.6 0.1 4.3e-17 62.5 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ApbA PF02558.16 gi|449067602|ref|YP_007434684.1| - 0.18 11.5 0.0 0.39 10.4 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Cupin_2 PF07883.11 gi|449067603|ref|YP_007434685.1| - 1.6e-15 56.5 0.1 2.4e-15 56.0 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|449067603|ref|YP_007434685.1| - 3e-10 39.9 0.0 5.1e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|449067603|ref|YP_007434685.1| - 1.8e-07 31.1 0.0 3.5e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|449067603|ref|YP_007434685.1| - 1.5e-05 25.1 0.0 2.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like ARD PF03079.14 gi|449067603|ref|YP_007434685.1| - 0.00011 22.5 1.1 0.00052 20.2 0.0 2.1 2 1 0 2 2 2 1 ARD/ARD' family Asp_Arg_Hydrox PF05118.15 gi|449067603|ref|YP_007434685.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase EutQ PF06249.12 gi|449067603|ref|YP_007434685.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Auxin_BP PF02041.16 gi|449067603|ref|YP_007434685.1| - 0.026 14.2 0.0 0.064 12.9 0.0 1.6 1 1 0 1 1 1 0 Auxin binding protein Prefoldin_2 PF01920.20 gi|449067603|ref|YP_007434685.1| - 0.031 14.2 0.4 5.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Prefoldin subunit DMSP_lyase PF16867.5 gi|449067603|ref|YP_007434685.1| - 0.13 11.9 0.1 0.24 11.0 0.1 1.4 2 0 0 2 2 2 0 Dimethlysulfonioproprionate lyase AraC_N PF06719.13 gi|449067603|ref|YP_007434685.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus DUF326 PF03860.16 gi|449067604|ref|YP_007434686.1| - 0.28 11.2 7.1 2.8 8.0 0.1 2.7 2 1 0 2 2 2 0 Domain of Unknown Function (DUF326) Fusion_gly PF00523.18 gi|449067604|ref|YP_007434686.1| - 0.97 7.6 5.7 1.1 7.5 5.7 1.0 1 0 0 1 1 1 0 Fusion glycoprotein F0 DUF2142 PF09913.9 gi|449067605|ref|YP_007434687.1| - 0.0036 16.2 6.2 0.0041 16.0 6.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2142) 7TM-7TMR_HD PF07698.11 gi|449067605|ref|YP_007434687.1| - 0.028 14.2 16.7 0.028 14.2 6.2 2.1 2 0 0 2 2 2 0 7TM receptor with intracellular HD hydrolase VIT1 PF01988.19 gi|449067605|ref|YP_007434687.1| - 0.13 12.1 16.2 0.28 11.0 4.0 2.1 1 1 1 2 2 2 0 VIT family NDUF_B12 PF08122.12 gi|449067605|ref|YP_007434687.1| - 0.2 11.7 1.3 17 5.5 0.1 2.9 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF2070 PF09843.9 gi|449067605|ref|YP_007434687.1| - 0.27 9.5 10.5 0.32 9.2 10.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) EI24 PF07264.11 gi|449067605|ref|YP_007434687.1| - 0.76 10.0 8.8 15 5.8 8.8 2.1 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) GSHPx PF00255.19 gi|449067606|ref|YP_007434688.1| - 0.013 15.1 0.1 0.027 14.0 0.1 1.5 1 0 0 1 1 1 0 Glutathione peroxidase BiPBP_C PF06832.12 gi|449067606|ref|YP_007434688.1| - 0.07 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family DUF4293 PF14126.6 gi|449067606|ref|YP_007434688.1| - 0.071 13.4 0.6 0.088 13.1 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) Adenosine_kin PF04008.14 gi|449067607|ref|YP_007434689.1| - 4.4e-78 260.4 0.1 5e-78 260.2 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DUF309 PF03745.14 gi|449067608|ref|YP_007434690.1| - 1.2e-13 50.5 0.0 1.5e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Radical_SAM PF04055.21 gi|449067610|ref|YP_007434692.1| - 6.5e-19 68.9 0.3 3.5e-18 66.5 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|449067610|ref|YP_007434692.1| - 0.004 16.5 6.7 0.12 11.8 0.1 2.9 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|449067610|ref|YP_007434692.1| - 0.0072 16.3 5.4 0.017 15.1 0.1 3.0 3 0 0 3 3 3 1 Double zinc ribbon Fer4_12 PF13353.6 gi|449067610|ref|YP_007434692.1| - 0.046 14.0 0.1 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.12 gi|449067610|ref|YP_007434692.1| - 0.47 10.0 6.0 0.87 9.1 1.4 3.1 3 1 0 3 3 3 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|449067610|ref|YP_007434692.1| - 0.58 9.9 0.0 0.58 9.9 0.0 3.9 5 0 0 5 5 5 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.26 gi|449067610|ref|YP_007434692.1| - 1.1 9.8 6.3 15 6.3 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 gi|449067610|ref|YP_007434692.1| - 1.3 8.8 11.4 0.69 9.7 0.4 3.1 3 0 0 3 3 3 0 zinc-ribbon domain PriA_CRR PF18319.1 gi|449067610|ref|YP_007434692.1| - 1.8 8.6 5.9 0.47 10.5 0.3 2.6 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain ECH_1 PF00378.20 gi|449067611|ref|YP_007434693.1| - 6.6e-72 241.8 0.0 8e-72 241.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|449067611|ref|YP_007434693.1| - 1.4e-41 143.1 0.0 2.1e-39 136.0 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|449067611|ref|YP_007434693.1| - 0.03 13.3 0.0 0.21 10.6 0.0 1.9 1 1 1 2 2 2 0 Serine dehydrogenase proteinase DUF2198 PF09964.9 gi|449067612|ref|YP_007434694.1| - 0.096 12.8 2.5 0.18 11.9 2.5 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) SPC12 PF06645.13 gi|449067612|ref|YP_007434694.1| - 2.7 8.2 5.8 2.2 8.4 1.0 2.2 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) UbiA PF01040.18 gi|449067613|ref|YP_007434695.1| - 6.8e-48 163.2 21.0 9.2e-48 162.7 21.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Homoserine_dh PF00742.19 gi|449067614|ref|YP_007434696.1| - 9.8e-48 162.3 0.0 1.2e-47 162.0 0.0 1.1 1 0 0 1 1 1 1 Homoserine dehydrogenase B3_4 PF03483.17 gi|449067615|ref|YP_007434697.1| - 2.8e-29 102.0 0.0 4.2e-29 101.4 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PmbA_TldD PF01523.16 gi|449067616|ref|YP_007434698.1| - 9.1e-43 147.1 0.2 1.4e-42 146.5 0.2 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Tup_N PF08581.10 gi|449067616|ref|YP_007434698.1| - 0.052 13.9 1.3 0.12 12.7 1.3 1.6 1 0 0 1 1 1 0 Tup N-terminal PmbA_TldD PF01523.16 gi|449067617|ref|YP_007434699.1| - 1.3e-36 126.9 0.1 2.1e-36 126.2 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3658 PF12395.8 gi|449067617|ref|YP_007434699.1| - 0.077 12.9 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function LMP PF04778.12 gi|449067617|ref|YP_007434699.1| - 0.24 11.3 4.2 5.5 6.9 4.3 2.8 2 1 0 2 2 2 0 LMP repeated region Usp PF00582.26 gi|449067618|ref|YP_007434700.1| - 1.8e-37 129.0 0.2 2e-37 128.8 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family BPL_LplA_LipB PF03099.19 gi|449067619|ref|YP_007434701.1| - 1.5e-13 50.8 0.1 3.1e-13 49.8 0.0 1.5 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family Mad3_BUB1_I_2 PF17014.5 gi|449067619|ref|YP_007434701.1| - 0.041 14.0 0.1 0.075 13.2 0.1 1.4 1 0 0 1 1 1 0 Putative Mad3/BUB1 like region 1 protein Sua5_yciO_yrdC PF01300.18 gi|449067620|ref|YP_007434702.1| - 2.5e-56 190.0 0.0 3.9e-56 189.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|449067620|ref|YP_007434702.1| - 3.7e-24 85.8 0.0 5.3e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Fe-S_assembly PF04384.13 gi|449067620|ref|YP_007434702.1| - 0.15 12.7 0.2 0.94 10.1 0.0 2.3 2 1 1 3 3 3 0 Iron-sulphur cluster assembly Oxidored_q6 PF01058.22 gi|449067621|ref|YP_007434703.1| - 4.3e-21 75.1 0.0 5.7e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Peptidase_M20 PF01546.28 gi|449067622|ref|YP_007434704.1| - 4.2e-38 131.1 0.0 5.6e-38 130.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|449067622|ref|YP_007434704.1| - 2.1e-18 66.2 0.0 3.9e-18 65.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|449067622|ref|YP_007434704.1| - 2.3e-09 37.2 0.0 1.9e-07 31.0 0.0 2.1 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M42 PF05343.14 gi|449067622|ref|YP_007434704.1| - 0.0029 16.7 0.0 0.28 10.2 0.0 2.8 2 1 1 3 3 3 1 M42 glutamyl aminopeptidase VIT1 PF01988.19 gi|449067623|ref|YP_007434705.1| - 1.3e-39 136.3 4.9 1.3e-39 136.3 4.9 1.9 3 0 0 3 3 3 1 VIT family Rubrerythrin PF02915.17 gi|449067623|ref|YP_007434705.1| - 2.6e-09 37.6 7.2 5.9e-09 36.5 7.2 1.5 1 0 0 1 1 1 1 Rubrerythrin DUF2299 PF10061.9 gi|449067623|ref|YP_007434705.1| - 0.12 12.1 0.1 0.36 10.6 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2299) DUF5409 PF17421.2 gi|449067623|ref|YP_007434705.1| - 0.19 12.5 3.3 2.2 9.1 1.2 2.6 2 1 0 2 2 2 0 Family of unknown function (DUF5409) DRY_EERY PF09750.9 gi|449067623|ref|YP_007434705.1| - 0.6 10.4 4.6 1.4 9.2 0.5 2.3 2 0 0 2 2 2 0 Alternative splicing regulator tRNA-synt_1d PF00750.19 gi|449067623|ref|YP_007434705.1| - 1.7 7.5 4.7 1.7 7.5 1.6 2.1 2 1 0 2 2 2 0 tRNA synthetases class I (R) CytB6-F_Fe-S PF08802.10 gi|449067623|ref|YP_007434705.1| - 2.9 8.0 5.5 8.9 6.4 0.7 2.7 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit MFS_1 PF07690.16 gi|449067624|ref|YP_007434706.1| - 1.5e-56 191.8 46.3 1.5e-56 191.8 46.3 2.0 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|449067624|ref|YP_007434706.1| - 7.3e-07 27.9 16.7 1e-06 27.5 11.3 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector PK PF00224.21 gi|449067625|ref|YP_007434707.1| - 2.9e-81 273.1 2.2 4.6e-81 272.4 2.2 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|449067625|ref|YP_007434707.1| - 2.8e-21 75.9 0.0 9.2e-21 74.3 0.0 1.9 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|449067625|ref|YP_007434707.1| - 0.1 11.7 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family DUF2299 PF10061.9 gi|449067626|ref|YP_007434708.1| - 1.2e-48 164.4 0.0 1.4e-48 164.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF2070 PF09843.9 gi|449067627|ref|YP_007434709.1| - 1.3 7.2 18.0 1.6 6.9 18.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2981 PF11200.8 gi|449067627|ref|YP_007434709.1| - 9.9 5.8 8.1 11 5.6 8.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2981) Methyltransf_11 PF08241.12 gi|449067628|ref|YP_007434710.1| - 1.9e-15 57.3 0.0 3.4e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067628|ref|YP_007434710.1| - 9.4e-12 45.5 0.0 1.4e-11 45.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|449067628|ref|YP_007434710.1| - 1.7e-08 34.4 0.0 2.3e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|449067628|ref|YP_007434710.1| - 2.3e-07 30.9 0.0 3.6e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.12 gi|449067628|ref|YP_007434710.1| - 5.6e-07 30.2 0.0 9.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|449067628|ref|YP_007434710.1| - 1.3e-05 25.1 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449067628|ref|YP_007434710.1| - 0.00011 21.6 0.0 0.0006 19.2 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|449067628|ref|YP_007434710.1| - 0.0022 17.0 0.0 0.0034 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|449067628|ref|YP_007434710.1| - 0.0084 15.7 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|449067628|ref|YP_007434710.1| - 0.02 14.2 0.0 0.048 12.9 0.0 1.6 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_7 PF03492.15 gi|449067628|ref|YP_007434710.1| - 0.12 11.6 0.1 0.25 10.5 0.0 1.5 2 0 0 2 2 2 0 SAM dependent carboxyl methyltransferase ThiS PF02597.20 gi|449067629|ref|YP_007434711.1| - 1.3e-06 28.9 0.2 1.5e-06 28.7 0.2 1.1 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|449067629|ref|YP_007434711.1| - 0.0065 16.5 0.0 0.0085 16.1 0.0 1.3 1 0 0 1 1 1 1 ThiS-like ubiquitin CRISPR_Cas2 PF09827.9 gi|449067629|ref|YP_007434711.1| - 0.013 15.6 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 0 CRISPR associated protein Cas2 TOBE_3 PF12857.7 gi|449067629|ref|YP_007434711.1| - 0.021 14.7 0.4 0.061 13.2 0.2 1.7 2 0 0 2 2 2 0 TOBE-like domain YukD PF08817.10 gi|449067629|ref|YP_007434711.1| - 0.028 15.1 0.5 0.057 14.1 0.4 1.6 1 1 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukD DUF3247 PF11607.8 gi|449067629|ref|YP_007434711.1| - 0.11 12.8 0.1 0.13 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3247) DAO PF01266.24 gi|449067631|ref|YP_007434713.1| - 9.8e-39 133.9 0.0 1.2e-38 133.6 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|449067631|ref|YP_007434713.1| - 1.3e-07 31.7 0.1 3.1e-07 30.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|449067631|ref|YP_007434713.1| - 5.8e-05 22.5 0.0 7.2e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|449067631|ref|YP_007434713.1| - 0.00018 21.2 0.3 0.00034 20.3 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|449067631|ref|YP_007434713.1| - 0.00024 20.5 0.0 0.001 18.4 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449067631|ref|YP_007434713.1| - 0.00032 21.2 3.0 0.0051 17.3 0.2 3.3 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|449067631|ref|YP_007434713.1| - 0.0011 18.9 0.1 0.0017 18.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PMBR PF09373.10 gi|449067631|ref|YP_007434713.1| - 0.0021 18.1 1.7 0.0064 16.6 0.1 2.6 2 0 0 2 2 2 1 Pseudomurein-binding repeat Trp_halogenase PF04820.14 gi|449067631|ref|YP_007434713.1| - 0.035 12.9 0.4 0.051 12.4 0.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Thi4 PF01946.17 gi|449067631|ref|YP_007434713.1| - 0.064 12.5 0.3 0.11 11.7 0.3 1.4 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.6 gi|449067631|ref|YP_007434713.1| - 0.072 13.1 0.3 0.27 11.2 0.3 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|449067631|ref|YP_007434713.1| - 0.083 11.9 0.1 0.13 11.3 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|449067631|ref|YP_007434713.1| - 0.098 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|449067631|ref|YP_007434713.1| - 0.16 12.2 0.1 0.34 11.2 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain HI0933_like PF03486.14 gi|449067631|ref|YP_007434713.1| - 0.17 10.5 0.4 0.27 9.9 0.4 1.3 1 0 0 1 1 1 0 HI0933-like protein GIDA PF01134.22 gi|449067631|ref|YP_007434713.1| - 0.19 10.8 0.1 0.35 9.9 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A DUF1955 PF09205.10 gi|449067632|ref|YP_007434714.1| - 6.4e-72 240.5 7.8 7.4e-72 240.3 7.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1955) RexA PF15969.5 gi|449067632|ref|YP_007434714.1| - 0.021 14.4 1.6 0.024 14.2 1.6 1.1 1 0 0 1 1 1 0 Intracellular sensor of Lambda phage, Abi component DUF790 PF05626.11 gi|449067633|ref|YP_007434715.1| - 4e-113 378.1 4.9 4.7e-113 377.8 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.15 gi|449067634|ref|YP_007434716.1| - 6e-26 91.5 0.0 4.8e-25 88.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|449067634|ref|YP_007434716.1| - 3.3e-17 62.8 0.2 1.4e-16 60.8 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|449067634|ref|YP_007434716.1| - 2e-16 59.9 0.4 4.2e-16 58.9 0.4 1.5 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|449067634|ref|YP_007434716.1| - 9.1e-11 41.5 0.1 2.2e-10 40.3 0.1 1.7 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|449067634|ref|YP_007434716.1| - 3.1e-08 33.6 0.0 1.2e-07 31.6 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|449067634|ref|YP_007434716.1| - 2.4e-07 29.8 0.1 1.5e-06 27.2 0.0 2.2 1 1 2 3 3 3 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|449067634|ref|YP_007434716.1| - 0.0026 18.0 0.8 0.87 9.9 0.0 3.1 2 1 0 3 3 3 1 AAA domain SWI2_SNF2 PF18766.1 gi|449067634|ref|YP_007434716.1| - 0.0033 17.1 0.3 0.1 12.3 0.0 2.8 2 1 0 2 2 2 1 SWI2/SNF2 ATPase ORC2 PF04084.14 gi|449067634|ref|YP_007434716.1| - 0.019 13.9 0.2 0.64 8.9 0.0 2.3 2 0 0 2 2 2 0 Origin recognition complex subunit 2 Helicase_C_2 PF13307.6 gi|449067634|ref|YP_007434716.1| - 0.14 12.4 2.0 1 9.5 0.0 3.0 2 2 2 4 4 4 0 Helicase C-terminal domain HTH_24 PF13412.6 gi|449067635|ref|YP_007434717.1| - 1.5e-26 91.7 6.4 7.1e-16 57.5 0.3 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|449067635|ref|YP_007434717.1| - 5e-18 64.7 0.0 1.5e-10 40.8 0.0 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|449067635|ref|YP_007434717.1| - 1.1e-07 31.6 0.7 0.014 15.3 0.0 2.8 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449067635|ref|YP_007434717.1| - 1.5e-06 28.0 0.0 0.035 14.0 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|449067635|ref|YP_007434717.1| - 3e-06 27.0 0.1 0.016 15.1 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_Mga PF08280.11 gi|449067635|ref|YP_007434717.1| - 8.1e-05 22.6 0.3 0.018 15.0 0.0 2.7 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|449067635|ref|YP_007434717.1| - 0.00016 21.6 0.0 0.077 13.0 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|449067635|ref|YP_007434717.1| - 0.00021 21.1 0.0 0.59 10.0 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_9 PF08221.11 gi|449067635|ref|YP_007434717.1| - 0.00033 20.7 0.3 0.86 9.7 0.1 2.3 2 0 0 2 2 2 2 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|449067635|ref|YP_007434717.1| - 0.00039 20.7 0.2 0.35 11.2 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_20 PF12840.7 gi|449067635|ref|YP_007434717.1| - 0.00058 19.9 0.0 0.57 10.3 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain Mga PF05043.13 gi|449067635|ref|YP_007434717.1| - 0.0013 19.3 0.1 1.8 9.2 0.1 2.5 2 0 0 2 2 2 2 Mga helix-turn-helix domain HTH_11 PF08279.12 gi|449067635|ref|YP_007434717.1| - 0.0016 18.3 1.1 0.56 10.2 0.2 2.4 2 0 0 2 2 2 1 HTH domain TFIIE_alpha PF02002.17 gi|449067635|ref|YP_007434717.1| - 0.0018 18.1 1.2 0.15 11.9 0.1 2.5 2 0 0 2 2 2 1 TFIIE alpha subunit Phage_rep_O PF04492.13 gi|449067635|ref|YP_007434717.1| - 0.0052 17.3 0.1 3 8.5 0.0 2.4 2 0 0 2 2 2 1 Bacteriophage replication protein O B-block_TFIIIC PF04182.12 gi|449067635|ref|YP_007434717.1| - 0.012 15.8 0.3 0.45 10.7 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.16 gi|449067635|ref|YP_007434717.1| - 0.016 15.0 0.1 0.83 9.5 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain HTH_45 PF14947.6 gi|449067635|ref|YP_007434717.1| - 0.07 13.1 1.5 2.7 8.0 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_23 PF13384.6 gi|449067635|ref|YP_007434717.1| - 0.078 12.8 0.0 6.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|449067635|ref|YP_007434717.1| - 0.11 12.2 0.0 2.5 7.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 UPF0175 PF03683.13 gi|449067635|ref|YP_007434717.1| - 0.12 12.0 0.0 0.38 10.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_28 PF13518.6 gi|449067635|ref|YP_007434717.1| - 0.17 12.1 0.0 4.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain PCI PF01399.27 gi|449067635|ref|YP_007434717.1| - 0.21 12.1 1.2 8.2 7.0 0.1 2.5 2 0 0 2 2 2 0 PCI domain NPCC PF08058.11 gi|449067636|ref|YP_007434718.1| - 1.3 9.1 5.3 1.2 9.2 3.8 1.7 1 1 0 1 1 1 0 Nuclear pore complex component ECF-ribofla_trS PF07155.12 gi|449067637|ref|YP_007434719.1| - 0.017 15.1 3.6 0.021 14.8 1.2 2.0 1 1 1 2 2 2 0 ECF-type riboflavin transporter, S component Peptidase_M32 PF02074.15 gi|449067638|ref|YP_007434720.1| - 1.8e-152 508.6 0.0 2.1e-152 508.3 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase 4HB_MCP_1 PF12729.7 gi|449067638|ref|YP_007434720.1| - 1.1 8.7 3.3 0.91 9.0 0.4 2.3 2 1 0 3 3 3 0 Four helix bundle sensory module for signal transduction MMPL PF03176.15 gi|449067639|ref|YP_007434721.1| - 5.2e-68 229.4 17.9 1.2e-34 119.8 6.6 2.4 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|449067639|ref|YP_007434721.1| - 0.0026 17.6 4.0 0.0026 17.6 4.0 3.0 2 0 0 2 2 2 1 Sterol-sensing domain of SREBP cleavage-activation Lectin_N PF03954.14 gi|449067639|ref|YP_007434721.1| - 0.12 12.1 0.9 0.47 10.2 0.9 2.1 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain EPOP PF15223.6 gi|449067639|ref|YP_007434721.1| - 0.56 9.5 2.0 0.74 9.1 1.0 1.6 2 0 0 2 2 2 0 Elongin BC and Polycomb repressive complex 2-associated protein Methyltransf_11 PF08241.12 gi|449067640|ref|YP_007434722.1| - 1e-11 45.3 0.0 1.8e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067640|ref|YP_007434722.1| - 8e-06 26.5 0.0 1.4e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|449067640|ref|YP_007434722.1| - 0.00015 21.7 0.0 0.00017 21.5 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_23 PF13489.6 gi|449067640|ref|YP_007434722.1| - 0.015 15.1 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449067640|ref|YP_007434722.1| - 0.025 13.9 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family ABC1 PF03109.16 gi|449067641|ref|YP_007434723.1| - 1.7e-24 86.2 0.0 3.7e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 ABC1 family RIO1 PF01163.22 gi|449067641|ref|YP_007434723.1| - 2.7e-06 27.1 0.2 1.1e-05 25.1 0.0 2.0 2 0 0 2 2 2 1 RIO1 family Pkinase PF00069.25 gi|449067641|ref|YP_007434723.1| - 2.5e-05 23.8 0.4 0.00035 20.0 0.4 2.3 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|449067641|ref|YP_007434723.1| - 0.2 11.6 0.1 0.7 9.8 0.1 1.8 1 1 0 2 2 2 0 Phosphotransferase enzyme family HSP20 PF00011.21 gi|449067642|ref|YP_007434724.1| - 5.7e-09 36.0 0.0 6.9e-09 35.8 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|449067642|ref|YP_007434724.1| - 5.3e-08 32.3 0.0 7.9e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CCG PF02754.16 gi|449067643|ref|YP_007434725.1| - 1.3e-10 41.3 0.0 4.6e-08 33.2 0.1 2.6 3 0 0 3 3 3 2 Cysteine-rich domain LUD_dom PF02589.15 gi|449067644|ref|YP_007434726.1| - 1.5e-53 181.3 0.8 2.9e-53 180.4 0.8 1.4 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|449067644|ref|YP_007434726.1| - 6.5e-11 42.5 3.0 1.1e-10 41.8 3.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449067644|ref|YP_007434726.1| - 3.8e-08 33.3 2.0 0.005 16.9 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449067644|ref|YP_007434726.1| - 1.2e-06 29.0 5.4 2.1e-06 28.2 5.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449067644|ref|YP_007434726.1| - 7.1e-06 26.5 5.7 2.3e-05 24.8 5.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449067644|ref|YP_007434726.1| - 0.00042 20.0 8.6 0.0019 18.0 1.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.6 gi|449067644|ref|YP_007434726.1| - 0.00067 19.4 1.9 0.11 12.2 0.1 2.5 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.6 gi|449067644|ref|YP_007434726.1| - 0.0012 19.0 5.8 0.066 13.4 7.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|449067644|ref|YP_007434726.1| - 0.0019 18.3 4.0 0.0073 16.4 4.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449067644|ref|YP_007434726.1| - 0.0089 16.1 10.1 0.021 14.9 2.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|449067644|ref|YP_007434726.1| - 0.012 15.7 6.1 0.062 13.4 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|449067644|ref|YP_007434726.1| - 0.016 16.0 4.1 0.36 11.7 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449067644|ref|YP_007434726.1| - 0.017 16.0 8.0 0.11 13.5 8.0 2.2 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|449067644|ref|YP_007434726.1| - 0.03 14.5 1.6 1 9.6 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449067644|ref|YP_007434726.1| - 0.034 14.7 1.4 0.034 14.7 1.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4448 PF14610.6 gi|449067645|ref|YP_007434727.1| - 0.0012 18.6 0.8 0.0044 16.8 0.6 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF4448) TMEM154 PF15102.6 gi|449067645|ref|YP_007434727.1| - 0.011 15.6 3.4 0.011 15.6 3.4 2.5 2 0 0 2 2 2 0 TMEM154 protein family DUF1180 PF06679.12 gi|449067645|ref|YP_007434727.1| - 0.014 15.8 4.4 0.03 14.7 4.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Plasmodium_Vir PF05795.11 gi|449067645|ref|YP_007434727.1| - 0.036 13.5 3.4 0.076 12.4 3.4 1.5 1 0 0 1 1 1 0 Plasmodium vivax Vir protein DUF4064 PF13273.6 gi|449067645|ref|YP_007434727.1| - 0.27 11.5 5.4 0.35 11.2 0.1 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) DUF3149 PF11346.8 gi|449067645|ref|YP_007434727.1| - 0.85 9.3 4.8 2.3 7.9 4.8 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) MFS_1 PF07690.16 gi|449067646|ref|YP_007434728.1| - 1.4e-36 126.2 50.9 9.2e-28 97.2 19.8 3.2 1 1 2 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067646|ref|YP_007434728.1| - 7.4e-09 35.0 36.6 2.4e-05 23.4 15.0 3.8 3 1 1 4 4 4 3 Sugar (and other) transporter MFS_3 PF05977.13 gi|449067646|ref|YP_007434728.1| - 0.0003 19.3 3.7 0.0003 19.3 3.7 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|449067646|ref|YP_007434728.1| - 5.1 5.3 9.0 4.9 5.3 2.5 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MarR PF01047.22 gi|449067647|ref|YP_007434729.1| - 4.9e-14 52.0 0.3 1.1e-13 50.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|449067647|ref|YP_007434729.1| - 5.6e-14 52.4 0.2 9.6e-14 51.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|449067647|ref|YP_007434729.1| - 2.9e-09 36.7 0.0 4.5e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|449067647|ref|YP_007434729.1| - 1.2e-08 34.7 1.2 1.9e-08 34.1 1.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|449067647|ref|YP_007434729.1| - 1e-07 31.7 0.7 2e-07 30.8 0.1 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|449067647|ref|YP_007434729.1| - 3.3e-07 30.4 0.3 5.1e-07 29.8 0.3 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|449067647|ref|YP_007434729.1| - 1.9e-05 24.8 1.1 3.7e-05 23.8 1.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|449067647|ref|YP_007434729.1| - 0.00012 21.8 0.6 0.00019 21.2 0.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|449067647|ref|YP_007434729.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|449067647|ref|YP_007434729.1| - 0.0011 18.9 1.9 0.0025 17.7 1.9 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4362 PF14275.6 gi|449067647|ref|YP_007434729.1| - 0.0021 18.3 1.1 0.0038 17.5 1.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4362) HxlR PF01638.17 gi|449067647|ref|YP_007434729.1| - 0.0023 17.8 0.5 0.004 17.0 0.5 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Ead_Ea22 PF13935.6 gi|449067647|ref|YP_007434729.1| - 0.0067 17.1 0.3 0.12 13.1 0.0 2.1 1 1 1 2 2 2 1 Ead/Ea22-like protein DUF3877 PF12993.7 gi|449067647|ref|YP_007434729.1| - 0.0077 16.1 1.7 0.0095 15.8 1.7 1.1 1 0 0 1 1 1 1 Domain of unknown function, E. rectale Gene description (DUF3877) Rrf2 PF02082.20 gi|449067647|ref|YP_007434729.1| - 0.011 16.1 0.1 0.026 14.8 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|449067647|ref|YP_007434729.1| - 0.012 15.4 0.0 0.03 14.1 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain PadR PF03551.14 gi|449067647|ref|YP_007434729.1| - 0.012 15.5 0.1 0.026 14.5 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|449067647|ref|YP_007434729.1| - 0.023 14.8 1.6 0.039 14.0 1.0 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) GFRP PF06399.13 gi|449067647|ref|YP_007434729.1| - 0.024 14.5 0.3 0.05 13.5 0.2 1.6 1 1 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) Ribosomal_S19e PF01090.19 gi|449067647|ref|YP_007434729.1| - 0.034 13.9 0.3 0.043 13.5 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e DUF5033 PF16436.5 gi|449067647|ref|YP_007434729.1| - 0.043 13.8 0.5 0.05 13.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5033) HTH_24 PF13412.6 gi|449067647|ref|YP_007434729.1| - 0.047 13.3 0.0 0.15 11.6 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|449067647|ref|YP_007434729.1| - 0.084 13.0 0.2 0.11 12.7 0.2 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|449067647|ref|YP_007434729.1| - 0.095 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RTP PF02334.16 gi|449067647|ref|YP_007434729.1| - 0.099 13.3 2.2 0.14 12.8 1.7 1.5 1 1 1 2 2 2 0 Replication terminator protein Myco_arth_vir_N PF09610.10 gi|449067648|ref|YP_007434730.1| - 8.2 6.6 7.3 2.8 8.1 0.7 3.1 3 0 0 3 3 3 0 Mycoplasma virulence signal region (Myco_arth_vir_N) dUTPase PF00692.19 gi|449067649|ref|YP_007434731.1| - 1.2e-07 31.4 0.0 2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 dUTPase SGL PF08450.12 gi|449067651|ref|YP_007434733.1| - 9.8e-76 254.6 0.0 1.1e-75 254.4 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Reg_prop PF07494.11 gi|449067651|ref|YP_007434733.1| - 0.00034 20.5 0.2 1.5 9.3 0.0 4.0 3 0 0 3 3 3 2 Two component regulator propeller Str_synth PF03088.16 gi|449067651|ref|YP_007434733.1| - 0.008 16.3 0.0 0.024 14.8 0.0 1.8 1 0 0 1 1 1 1 Strictosidine synthase Arylesterase PF01731.20 gi|449067651|ref|YP_007434733.1| - 0.14 12.3 0.0 0.36 11.0 0.0 1.7 1 0 0 1 1 1 0 Arylesterase Peptidase_M48 PF01435.18 gi|449067652|ref|YP_007434734.1| - 4.8e-21 75.4 0.0 1.4e-20 73.9 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|449067652|ref|YP_007434734.1| - 1e-07 31.5 4.3 1e-07 31.5 4.3 1.4 1 1 0 1 1 1 1 BlaR1 peptidase M56 ISK_Channel PF02060.15 gi|449067652|ref|YP_007434734.1| - 0.3 10.8 2.4 2.6 7.8 0.4 2.3 2 0 0 2 2 2 0 Slow voltage-gated potassium channel DUF5313 PF17240.2 gi|449067652|ref|YP_007434734.1| - 0.62 10.5 2.9 1.4 9.3 2.9 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5313) Pex24p PF06398.11 gi|449067652|ref|YP_007434734.1| - 1.2 8.1 7.9 2.5 7.0 7.6 1.6 2 1 0 2 2 2 0 Integral peroxisomal membrane peroxin Peptidase_S9 PF00326.21 gi|449067656|ref|YP_007434738.1| - 2.3e-49 167.7 0.1 3.3e-49 167.3 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|449067656|ref|YP_007434738.1| - 2.8e-09 37.0 0.9 1.2e-06 28.4 0.5 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|449067656|ref|YP_007434738.1| - 3.5e-08 33.4 0.2 4.6e-05 23.1 0.2 2.4 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|449067656|ref|YP_007434738.1| - 3.7e-07 29.7 0.1 0.0063 15.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|449067656|ref|YP_007434738.1| - 8.4e-06 25.5 0.0 2e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family DPPIV_N PF00930.21 gi|449067656|ref|YP_007434738.1| - 0.0012 17.7 0.0 0.033 13.0 0.0 2.4 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_6 PF12697.7 gi|449067656|ref|YP_007434738.1| - 0.0065 17.1 0.0 0.0091 16.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|449067656|ref|YP_007434738.1| - 0.017 14.8 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 gi|449067656|ref|YP_007434738.1| - 0.084 12.7 0.1 0.27 11.0 0.0 1.8 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Op_neuropeptide PF08035.11 gi|449067656|ref|YP_007434738.1| - 0.41 10.5 1.7 3 7.8 0.3 2.4 2 0 0 2 2 2 0 Opioids neuropeptide TraI_2_C PF07515.11 gi|449067657|ref|YP_007434739.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative conjugal transfer nickase/helicase TraI C-term UPF0730 PF15827.5 gi|449067660|ref|YP_007434742.1| - 0.83 9.4 4.8 23 4.8 0.0 2.8 2 0 0 2 2 2 0 UPF0730 unknown protein family ITI_HC_C PF06668.12 gi|449067663|ref|YP_007434745.1| - 0.015 15.0 1.1 0.027 14.1 1.1 1.4 1 0 0 1 1 1 0 Inter-alpha-trypsin inhibitor heavy chain C-terminus Phage_min_cap2 PF06152.11 gi|449067663|ref|YP_007434745.1| - 0.64 8.9 2.8 0.95 8.3 2.8 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 DUF998 PF06197.13 gi|449067665|ref|YP_007434747.1| - 6e-20 71.6 15.2 7e-20 71.4 15.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Melittin PF01372.17 gi|449067665|ref|YP_007434747.1| - 0.2 11.6 3.0 5.7 7.1 0.9 3.0 1 1 1 2 2 2 0 Melittin VIT1 PF01988.19 gi|449067665|ref|YP_007434747.1| - 2.7 7.8 7.3 3.5 7.4 7.3 1.2 1 0 0 1 1 1 0 VIT family ADH_N PF08240.12 gi|449067667|ref|YP_007434749.1| - 3.4e-25 88.0 1.8 4.7e-25 87.6 0.2 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449067667|ref|YP_007434749.1| - 3.9e-25 88.3 4.1 4.4e-25 88.2 0.2 2.6 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449067667|ref|YP_007434749.1| - 4.5e-08 34.2 0.0 8.3e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|449067667|ref|YP_007434749.1| - 0.0077 16.0 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SIS_2 PF13580.6 gi|449067667|ref|YP_007434749.1| - 0.013 15.5 0.1 0.077 13.0 0.1 2.1 3 0 0 3 3 3 0 SIS domain NmrA PF05368.13 gi|449067667|ref|YP_007434749.1| - 0.017 14.7 0.1 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family PALP PF00291.25 gi|449067667|ref|YP_007434749.1| - 0.018 14.4 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|449067667|ref|YP_007434749.1| - 0.073 12.4 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.15 gi|449067667|ref|YP_007434749.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Arteri_nsp7a PF16749.5 gi|449067667|ref|YP_007434749.1| - 0.13 12.4 0.1 2.6 8.2 0.0 2.3 2 0 0 2 2 2 0 Arterivirus nonstructural protein 7 alpha Peptidase_M19 PF01244.21 gi|449067668|ref|YP_007434750.1| - 3.7e-74 249.7 0.0 4.3e-74 249.5 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) RMMBL PF07521.12 gi|449067668|ref|YP_007434750.1| - 0.00033 20.5 0.1 0.0007 19.5 0.1 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain HMA PF00403.26 gi|449067669|ref|YP_007434751.1| - 2.1e-13 50.5 0.0 2.8e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain EcoRI PF02963.16 gi|449067669|ref|YP_007434751.1| - 0.14 11.2 0.9 0.75 8.8 0.1 1.9 1 1 1 2 2 2 0 Restriction endonuclease EcoRI Na_Ca_ex PF01699.24 gi|449067670|ref|YP_007434752.1| - 6.1e-29 100.9 34.0 4e-16 59.3 13.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Pkinase PF00069.25 gi|449067671|ref|YP_007434753.1| - 1.9e-39 135.7 0.1 2.6e-39 135.2 0.1 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|449067671|ref|YP_007434753.1| - 6.5e-20 71.5 0.0 4.8e-19 68.7 0.0 2.3 1 1 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|449067671|ref|YP_007434753.1| - 4.4e-06 26.2 0.0 6.3e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 Kinase-like Kdo PF06293.14 gi|449067671|ref|YP_007434753.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF1759 PF03564.15 gi|449067672|ref|YP_007434754.1| - 0.014 15.3 0.6 0.018 15.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1759) LXG PF04740.12 gi|449067672|ref|YP_007434754.1| - 0.016 14.9 1.4 0.017 14.8 1.4 1.1 1 0 0 1 1 1 0 LXG domain of WXG superfamily DUF4411 PF14367.6 gi|449067672|ref|YP_007434754.1| - 0.018 15.0 0.7 0.023 14.6 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) Terminase_2 PF03592.16 gi|449067672|ref|YP_007434754.1| - 0.08 13.4 2.7 0.11 12.9 2.7 1.3 1 1 0 1 1 1 0 Terminase small subunit DUF3782 PF12644.7 gi|449067673|ref|YP_007434755.1| - 0.0012 19.0 0.1 0.0022 18.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) MFS_1 PF07690.16 gi|449067674|ref|YP_007434756.1| - 3e-29 102.1 47.8 1.2e-20 73.8 19.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC_tran PF00005.27 gi|449067676|ref|YP_007434758.1| - 1.6e-31 109.7 0.0 2.7e-31 108.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067676|ref|YP_007434758.1| - 3.8e-15 56.5 0.3 1.5e-10 41.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|449067676|ref|YP_007434758.1| - 2.1e-07 31.0 0.0 0.0016 18.3 0.0 2.3 1 1 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|449067676|ref|YP_007434758.1| - 5.7e-05 23.6 0.0 0.00015 22.2 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|449067676|ref|YP_007434758.1| - 5.8e-05 22.6 0.1 0.24 10.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|449067676|ref|YP_007434758.1| - 0.00028 20.9 0.2 0.00083 19.3 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|449067676|ref|YP_007434758.1| - 0.00092 19.5 0.4 0.0048 17.2 0.3 2.2 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|449067676|ref|YP_007434758.1| - 0.0012 19.3 0.2 0.0093 16.5 0.1 2.4 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|449067676|ref|YP_007434758.1| - 0.0013 18.5 0.2 0.075 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|449067676|ref|YP_007434758.1| - 0.0015 18.5 0.1 0.0068 16.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|449067676|ref|YP_007434758.1| - 0.0017 18.1 0.1 1.6 8.5 0.0 2.9 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA PF00004.29 gi|449067676|ref|YP_007434758.1| - 0.0017 18.7 0.1 0.005 17.3 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|449067676|ref|YP_007434758.1| - 0.0021 18.2 0.0 0.0048 17.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|449067676|ref|YP_007434758.1| - 0.0023 17.9 0.0 0.0067 16.4 0.0 1.7 2 0 0 2 2 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF4162 PF13732.6 gi|449067676|ref|YP_007434758.1| - 0.0031 18.2 0.0 0.011 16.4 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|449067676|ref|YP_007434758.1| - 0.0031 17.2 0.0 0.0076 16.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|449067676|ref|YP_007434758.1| - 0.0039 17.7 1.5 0.0085 16.6 1.5 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|449067676|ref|YP_007434758.1| - 0.011 15.0 0.1 0.054 12.7 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|449067676|ref|YP_007434758.1| - 0.021 14.8 0.1 0.052 13.5 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|449067676|ref|YP_007434758.1| - 0.022 14.5 0.0 0.035 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|449067676|ref|YP_007434758.1| - 0.024 14.2 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|449067676|ref|YP_007434758.1| - 0.027 14.7 0.0 0.13 12.5 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|449067676|ref|YP_007434758.1| - 0.028 14.3 0.6 0.36 10.7 0.1 2.5 3 0 0 3 3 3 0 NTPase AAA_7 PF12775.7 gi|449067676|ref|YP_007434758.1| - 0.032 13.7 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|449067676|ref|YP_007434758.1| - 0.044 13.7 1.0 0.16 11.9 0.0 2.2 2 1 1 3 3 2 0 ATPase domain predominantly from Archaea MobB PF03205.14 gi|449067676|ref|YP_007434758.1| - 0.067 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_27 PF13514.6 gi|449067676|ref|YP_007434758.1| - 0.069 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|449067676|ref|YP_007434758.1| - 0.071 13.1 0.2 0.13 12.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) DLIC PF05783.11 gi|449067676|ref|YP_007434758.1| - 0.073 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_28 PF13521.6 gi|449067676|ref|YP_007434758.1| - 0.077 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|449067676|ref|YP_007434758.1| - 0.097 12.3 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.16 gi|449067676|ref|YP_007434758.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 gi|449067676|ref|YP_007434758.1| - 0.17 12.3 0.0 0.42 11.0 0.0 1.7 2 0 0 2 2 1 0 RNA helicase SRP54 PF00448.22 gi|449067676|ref|YP_007434758.1| - 0.19 11.3 0.1 0.31 10.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Aldedh PF00171.22 gi|449067677|ref|YP_007434759.1| - 1e-165 551.8 0.0 1.1e-165 551.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Xan_ur_permease PF00860.20 gi|449067678|ref|YP_007434760.1| - 9.3e-20 70.7 51.8 2.5e-18 66.0 51.8 2.1 1 1 0 1 1 1 1 Permease family UPF0114 PF03350.16 gi|449067678|ref|YP_007434760.1| - 0.038 14.2 0.6 0.038 14.2 0.6 3.5 3 1 0 3 3 3 0 Uncharacterized protein family, UPF0114 DUF5453 PF17534.2 gi|449067678|ref|YP_007434760.1| - 0.16 11.9 4.0 1.4 8.8 0.1 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5453) Pyr_redox_2 PF07992.14 gi|449067679|ref|YP_007434761.1| - 5e-45 154.0 0.3 7.7e-45 153.4 0.3 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449067679|ref|YP_007434761.1| - 3e-18 66.1 3.9 1.3e-16 61.0 0.3 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449067679|ref|YP_007434761.1| - 8.9e-06 25.2 0.0 2.1e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|449067679|ref|YP_007434761.1| - 2.3e-05 23.8 0.6 0.07 12.4 0.1 2.5 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.19 gi|449067679|ref|YP_007434761.1| - 0.00088 18.1 0.0 0.0013 17.5 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NAD_binding_8 PF13450.6 gi|449067679|ref|YP_007434761.1| - 0.0034 17.6 0.0 1.8 8.8 0.0 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|449067679|ref|YP_007434761.1| - 0.026 14.1 7.3 0.48 9.9 0.0 3.4 2 2 2 4 4 4 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|449067679|ref|YP_007434761.1| - 0.11 11.2 3.9 5.8 5.5 0.1 3.8 2 2 2 4 4 4 0 HI0933-like protein NTP_transferase PF00483.23 gi|449067680|ref|YP_007434762.1| - 4.2e-53 180.5 0.0 5.2e-53 180.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|449067680|ref|YP_007434762.1| - 8e-07 29.6 0.0 1.1e-06 29.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|449067680|ref|YP_007434762.1| - 1.3e-06 27.7 0.1 1.7e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 L-fucokinase Hexapep PF00132.24 gi|449067680|ref|YP_007434762.1| - 9.4e-06 25.2 10.5 2.7e-05 23.7 0.3 5.3 5 1 1 6 6 6 2 Bacterial transferase hexapeptide (six repeats) GDP_Man_Dehyd PF16363.5 gi|449067681|ref|YP_007434763.1| - 5.1e-62 210.2 0.0 6.9e-62 209.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|449067681|ref|YP_007434763.1| - 3.1e-55 187.3 0.0 3.7e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|449067681|ref|YP_007434763.1| - 7.9e-19 67.8 0.0 9.6e-19 67.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|449067681|ref|YP_007434763.1| - 1.2e-15 57.3 0.0 1.6e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|449067681|ref|YP_007434763.1| - 1.9e-14 53.5 0.4 2.3e-13 50.0 0.4 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|449067681|ref|YP_007434763.1| - 4.1e-10 39.3 1.8 4.3e-09 35.9 0.2 2.7 2 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|449067681|ref|YP_007434763.1| - 4e-05 23.6 0.0 5.6e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|449067681|ref|YP_007434763.1| - 0.024 14.1 0.7 0.33 10.4 0.7 2.5 1 1 0 1 1 1 0 short chain dehydrogenase RmlD_sub_bind PF04321.17 gi|449067682|ref|YP_007434764.1| - 9.5e-60 202.1 0.0 1.1e-59 202.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|449067682|ref|YP_007434764.1| - 5.1e-12 45.8 0.0 7.6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|449067682|ref|YP_007434764.1| - 2.5e-07 30.4 0.1 2.5e-07 30.4 0.1 1.6 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|449067682|ref|YP_007434764.1| - 9e-07 28.3 1.7 3.5e-06 26.4 0.3 2.7 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein dTDP_sugar_isom PF00908.17 gi|449067683|ref|YP_007434765.1| - 9.2e-56 188.1 0.0 1e-55 188.0 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_1 PF00190.22 gi|449067683|ref|YP_007434765.1| - 6.5e-05 22.6 0.0 8.5e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_4 PF08007.12 gi|449067683|ref|YP_007434765.1| - 0.095 12.1 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Cupin superfamily protein SBP_bac_11 PF13531.6 gi|449067684|ref|YP_007434766.1| - 3.6e-26 92.3 0.2 5.1e-26 91.8 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|449067684|ref|YP_007434766.1| - 1.1e-10 41.9 6.9 1.8e-10 41.3 6.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Pilin_N PF07790.11 gi|449067684|ref|YP_007434766.1| - 0.0061 17.5 1.6 0.014 16.3 1.6 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF2371 PF10177.9 gi|449067684|ref|YP_007434766.1| - 0.011 15.9 0.3 0.022 14.9 0.3 1.5 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF3446 PF11928.8 gi|449067684|ref|YP_007434766.1| - 0.021 15.1 7.7 0.021 15.1 7.7 2.2 2 1 0 2 2 2 0 Early growth response N-terminal domain DUF4307 PF14155.6 gi|449067684|ref|YP_007434766.1| - 0.071 12.9 0.2 0.17 11.7 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF2749 PF10907.8 gi|449067684|ref|YP_007434766.1| - 0.32 11.2 2.9 0.66 10.2 2.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) NVEALA PF14055.6 gi|449067684|ref|YP_007434766.1| - 0.47 10.5 2.5 9.2 6.3 0.3 2.5 2 0 0 2 2 2 0 NVEALA protein Prog_receptor PF02161.15 gi|449067684|ref|YP_007434766.1| - 0.88 8.2 5.7 0.25 10.0 2.6 1.5 2 0 0 2 2 2 0 Progesterone receptor Pyr_redox_2 PF07992.14 gi|449067685|ref|YP_007434767.1| - 2.9e-55 187.6 0.2 4e-55 187.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|449067685|ref|YP_007434767.1| - 3.8e-30 104.4 0.1 8.8e-30 103.2 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|449067685|ref|YP_007434767.1| - 5.1e-17 62.1 0.3 8.3e-17 61.4 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449067685|ref|YP_007434767.1| - 1.8e-10 41.2 1.8 2.3e-10 40.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|449067685|ref|YP_007434767.1| - 1.1e-07 31.3 9.7 0.00026 20.2 2.1 4.4 4 1 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|449067685|ref|YP_007434767.1| - 0.00022 20.1 1.4 0.4 9.3 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|449067685|ref|YP_007434767.1| - 0.0018 17.4 2.3 0.29 10.1 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain K_oxygenase PF13434.6 gi|449067685|ref|YP_007434767.1| - 0.041 13.0 0.4 0.68 9.0 0.0 2.5 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) YHS PF04945.13 gi|449067686|ref|YP_007434768.1| - 1.3e-05 25.2 2.0 1.8e-05 24.7 2.0 1.2 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|449067686|ref|YP_007434768.1| - 4.2e-05 23.8 4.5 5.7e-05 23.4 4.5 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|449067686|ref|YP_007434768.1| - 7.3e-05 22.6 4.2 9.6e-05 22.2 4.2 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.8 gi|449067686|ref|YP_007434768.1| - 0.00047 20.8 4.9 0.00055 20.6 4.9 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Ta0938 PF11494.8 gi|449067686|ref|YP_007434768.1| - 0.01 16.1 0.9 0.011 16.0 0.9 1.1 1 0 0 1 1 1 0 Ta0938 zinc_ribbon_15 PF17032.5 gi|449067686|ref|YP_007434768.1| - 0.02 15.6 4.3 0.025 15.3 4.3 1.2 1 0 0 1 1 1 0 zinc-ribbon family DUF2175 PF09943.9 gi|449067686|ref|YP_007434768.1| - 0.049 13.9 3.0 0.057 13.7 3.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) LIM PF00412.22 gi|449067686|ref|YP_007434768.1| - 0.093 13.0 7.1 2.8 8.3 7.0 2.1 1 1 0 1 1 1 0 LIM domain FeoB_associated PF12669.7 gi|449067686|ref|YP_007434768.1| - 0.14 12.6 3.7 1.3 9.4 0.5 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein HypA PF01155.19 gi|449067686|ref|YP_007434768.1| - 0.18 11.9 5.0 1.7 8.7 5.0 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|449067686|ref|YP_007434768.1| - 0.32 11.0 7.8 4.4 7.3 7.8 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|449067686|ref|YP_007434768.1| - 0.61 10.2 8.5 3.1 8.0 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain HTH_5 PF01022.20 gi|449067687|ref|YP_007434769.1| - 8.4e-16 57.6 0.8 1.4e-15 56.9 0.8 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|449067687|ref|YP_007434769.1| - 3.8e-10 39.7 0.0 5.5e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|449067687|ref|YP_007434769.1| - 2.1e-06 27.5 0.0 3.7e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|449067687|ref|YP_007434769.1| - 1.4e-05 25.2 0.1 2.4e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|449067687|ref|YP_007434769.1| - 4e-05 23.1 0.1 8.5e-05 22.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|449067687|ref|YP_007434769.1| - 0.00061 20.1 0.0 0.0009 19.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|449067687|ref|YP_007434769.1| - 0.0008 19.2 1.1 0.002 18.0 1.1 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|449067687|ref|YP_007434769.1| - 0.0014 18.4 0.1 0.0022 17.9 0.1 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|449067687|ref|YP_007434769.1| - 0.003 17.0 0.0 0.056 13.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|449067687|ref|YP_007434769.1| - 0.0048 16.8 0.0 0.0088 16.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain DUF2551 PF10826.8 gi|449067687|ref|YP_007434769.1| - 0.0059 16.8 0.3 0.014 15.6 0.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2551) HTH_38 PF13936.6 gi|449067687|ref|YP_007434769.1| - 0.0097 15.6 0.1 0.02 14.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|449067687|ref|YP_007434769.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.6 gi|449067687|ref|YP_007434769.1| - 0.029 14.8 0.1 0.044 14.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.8 gi|449067687|ref|YP_007434769.1| - 0.045 13.6 0.4 0.1 12.5 0.4 1.6 1 0 0 1 1 1 0 Tc3 transposase Phage_RpbA PF10789.9 gi|449067687|ref|YP_007434769.1| - 0.066 13.3 0.1 0.1 12.7 0.1 1.3 1 0 0 1 1 1 0 Phage RNA polymerase binding, RpbA HTH_9 PF08221.11 gi|449067687|ref|YP_007434769.1| - 0.11 12.7 0.6 0.2 11.8 0.6 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.10 gi|449067687|ref|YP_007434769.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|449067687|ref|YP_007434769.1| - 0.13 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Voltage_CLC PF00654.20 gi|449067688|ref|YP_007434770.1| - 1.6e-94 317.1 36.3 7.6e-94 314.9 29.2 2.1 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|449067688|ref|YP_007434770.1| - 4.2e-17 62.3 0.7 4e-08 33.6 0.2 2.5 2 0 0 2 2 2 2 CBS domain DUF2589 PF11655.8 gi|449067688|ref|YP_007434770.1| - 0.0072 16.7 0.0 0.012 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2589) Acyl-CoA_dh_1 PF00441.24 gi|449067690|ref|YP_007434772.1| - 4.2e-31 108.2 0.0 5.8e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449067690|ref|YP_007434772.1| - 2e-17 63.2 0.0 3.3e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|449067690|ref|YP_007434772.1| - 1.8e-10 41.2 0.0 2.8e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|449067690|ref|YP_007434772.1| - 6.2e-07 30.1 0.0 1.1e-06 29.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Thermopsin PF05317.11 gi|449067691|ref|YP_007434773.1| - 5.7e-89 298.0 25.5 6.9e-89 297.8 25.5 1.1 1 0 0 1 1 1 1 Thermopsin ILVD_EDD PF00920.21 gi|449067692|ref|YP_007434774.1| - 8e-207 687.9 1.6 9e-207 687.8 1.6 1.0 1 0 0 1 1 1 1 Dehydratase family DHC_N1 PF08385.12 gi|449067693|ref|YP_007434775.1| - 0.045 12.4 0.2 0.049 12.3 0.2 1.0 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 Nif11 PF07862.11 gi|449067693|ref|YP_007434775.1| - 0.088 13.1 0.2 0.13 12.6 0.2 1.3 1 0 0 1 1 1 0 Nif11 domain OppC_N PF12911.7 gi|449067695|ref|YP_007434777.1| - 0.18 11.8 5.4 0.29 11.2 5.4 1.4 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DLH PF01738.18 gi|449067696|ref|YP_007434778.1| - 1.3e-68 230.9 0.0 3.6e-68 229.4 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|449067696|ref|YP_007434778.1| - 8.4e-07 28.5 0.0 0.018 14.3 0.0 2.9 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|449067696|ref|YP_007434778.1| - 0.0024 17.7 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|449067696|ref|YP_007434778.1| - 0.045 13.5 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|449067696|ref|YP_007434778.1| - 0.097 12.1 0.0 3 7.2 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Chlorophyllase PF07224.11 gi|449067696|ref|YP_007434778.1| - 0.14 11.1 0.0 0.39 9.7 0.0 1.6 2 0 0 2 2 2 0 Chlorophyllase BAAT_C PF08840.11 gi|449067696|ref|YP_007434778.1| - 0.17 11.8 0.1 15 5.4 0.0 2.3 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF72 PF01904.18 gi|449067698|ref|YP_007434780.1| - 1.3e-37 130.0 0.2 1.6e-37 129.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 RVT_3 PF13456.6 gi|449067699|ref|YP_007434781.1| - 3.1e-17 62.5 0.0 3.5e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|449067699|ref|YP_007434781.1| - 1.4e-05 25.3 0.0 2.5e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 RNase H DUF1465 PF07323.12 gi|449067699|ref|YP_007434781.1| - 0.06 13.2 0.0 0.081 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) Flavin_Reduct PF01613.18 gi|449067700|ref|YP_007434782.1| - 1.1e-16 61.2 0.0 1.3e-16 61.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain mCpol PF18182.1 gi|449067701|ref|YP_007434783.1| - 0.067 13.5 0.1 0.089 13.1 0.1 1.1 1 0 0 1 1 1 0 minimal CRISPR polymerase domain Peptidase_M61 PF05299.12 gi|449067702|ref|YP_007434784.1| - 2.8e-32 111.6 0.1 4.7e-32 110.9 0.1 1.4 1 0 0 1 1 1 1 M61 glycyl aminopeptidase Peptidase_M61_N PF17899.1 gi|449067702|ref|YP_007434784.1| - 2e-13 50.7 0.7 5.6e-12 46.1 0.2 2.7 2 1 0 2 2 2 1 Peptidase M61 N-terminal domain PDZ_6 PF17820.1 gi|449067702|ref|YP_007434784.1| - 4.2e-06 26.5 0.0 9e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|449067702|ref|YP_007434784.1| - 0.0016 18.7 0.4 0.047 14.0 0.4 2.6 1 1 0 1 1 1 1 PDZ domain Peptidase_M9 PF01752.17 gi|449067702|ref|YP_007434784.1| - 0.0025 17.1 0.1 0.0049 16.2 0.1 1.4 1 0 0 1 1 1 1 Collagenase PDZ PF00595.24 gi|449067702|ref|YP_007434784.1| - 0.029 14.7 0.2 0.083 13.2 0.0 1.8 2 0 0 2 2 2 0 PDZ domain Nup35_RRM PF05172.13 gi|449067702|ref|YP_007434784.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif Sugar_tr PF00083.24 gi|449067703|ref|YP_007434785.1| - 2.8e-42 145.2 25.1 3.4e-42 144.9 25.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067703|ref|YP_007434785.1| - 1e-34 120.0 50.3 1.4e-27 96.5 35.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PPR_1 PF12854.7 gi|449067703|ref|YP_007434785.1| - 0.059 13.1 0.2 0.15 11.8 0.2 1.6 1 0 0 1 1 1 0 PPR repeat PPR PF01535.20 gi|449067703|ref|YP_007434785.1| - 0.15 12.4 0.1 0.39 11.1 0.1 1.7 1 0 0 1 1 1 0 PPR repeat CoA_transf_3 PF02515.17 gi|449067704|ref|YP_007434786.1| - 1.1e-53 182.8 0.0 2.2e-53 181.7 0.0 1.5 1 1 0 1 1 1 1 CoA-transferase family III DUF1028 PF06267.12 gi|449067705|ref|YP_007434787.1| - 3.1e-70 235.9 0.0 3.9e-70 235.6 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.11 gi|449067705|ref|YP_007434787.1| - 1.5e-13 50.8 0.1 3.6e-13 49.6 0.1 1.7 1 0 0 1 1 1 1 Putative peptidoglycan binding domain Gp45_2 PF17470.2 gi|449067705|ref|YP_007434787.1| - 0.12 12.4 0.1 2.7 8.0 0.0 2.5 2 0 0 2 2 2 0 Phage gene product 45.2 Thiolase_N PF00108.23 gi|449067706|ref|YP_007434788.1| - 7.2e-27 94.4 0.0 2e-26 92.9 0.0 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449067706|ref|YP_007434788.1| - 1.7e-06 27.7 0.1 4.9e-06 26.2 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|449067706|ref|YP_007434788.1| - 2.2e-05 24.2 0.1 0.00073 19.4 0.2 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ribosomal_L28e PF01778.17 gi|449067706|ref|YP_007434788.1| - 0.14 12.9 0.3 5.1 7.9 0.0 2.5 3 0 0 3 3 3 0 Ribosomal L28e protein family HypA PF01155.19 gi|449067707|ref|YP_007434789.1| - 3.5e-05 23.8 0.5 5e-05 23.3 0.5 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|449067707|ref|YP_007434789.1| - 0.0016 18.4 1.8 0.076 13.0 0.1 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DUF35_N PF12172.8 gi|449067707|ref|YP_007434789.1| - 0.0052 16.6 1.4 0.0094 15.8 1.4 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) NRDD PF13597.6 gi|449067707|ref|YP_007434789.1| - 0.0083 15.0 0.8 0.009 14.8 0.8 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin_2 PF18073.1 gi|449067707|ref|YP_007434789.1| - 0.02 14.6 5.2 0.046 13.4 5.2 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 gi|449067707|ref|YP_007434789.1| - 0.023 14.6 2.1 0.055 13.4 2.1 1.7 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zf-LITAF-like PF10601.9 gi|449067707|ref|YP_007434789.1| - 0.023 14.9 1.5 0.053 13.8 0.0 2.2 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|449067707|ref|YP_007434789.1| - 0.028 14.0 1.7 2.3 7.8 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|449067707|ref|YP_007434789.1| - 0.028 14.5 5.1 0.078 13.1 5.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|449067707|ref|YP_007434789.1| - 0.037 14.1 2.3 0.037 14.1 2.3 1.8 2 0 0 2 2 2 0 Double zinc ribbon Ribosomal_L37e PF01907.19 gi|449067707|ref|YP_007434789.1| - 0.037 14.2 2.2 0.059 13.5 2.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e TFIIS_C PF01096.18 gi|449067707|ref|YP_007434789.1| - 0.056 13.3 6.0 1.9 8.4 0.1 2.6 3 0 0 3 3 2 0 Transcription factor S-II (TFIIS) FdhE PF04216.12 gi|449067707|ref|YP_007434789.1| - 0.092 12.6 0.4 0.11 12.4 0.4 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_4 PF13717.6 gi|449067707|ref|YP_007434789.1| - 0.094 12.7 7.5 0.93 9.5 4.5 2.6 2 1 0 2 2 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|449067707|ref|YP_007434789.1| - 0.098 12.5 1.4 0.098 12.5 1.4 1.8 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2072 PF09845.9 gi|449067707|ref|YP_007434789.1| - 0.11 12.7 0.7 0.11 12.7 0.7 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-ribbon_3 PF13248.6 gi|449067707|ref|YP_007434789.1| - 0.17 11.3 4.2 0.34 10.4 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|449067707|ref|YP_007434789.1| - 0.18 12.5 2.3 0.23 12.1 2.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|449067707|ref|YP_007434789.1| - 0.22 11.7 4.1 5.2 7.3 0.1 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DNA_RNApol_7kD PF03604.13 gi|449067707|ref|YP_007434789.1| - 0.23 11.2 5.1 0.59 9.9 5.1 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|449067707|ref|YP_007434789.1| - 0.23 11.1 4.1 1.1 8.9 0.2 2.5 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|449067707|ref|YP_007434789.1| - 0.24 11.9 2.7 3.2 8.3 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain A2L_zn_ribbon PF08792.10 gi|449067707|ref|YP_007434789.1| - 0.24 11.2 6.7 2.5 7.9 0.2 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|449067707|ref|YP_007434789.1| - 0.26 11.4 4.2 2.6 8.2 0.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.6 gi|449067707|ref|YP_007434789.1| - 0.68 10.1 3.2 9.6 6.4 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RRN7 PF11781.8 gi|449067707|ref|YP_007434789.1| - 2 8.2 7.6 2.5 7.9 0.3 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|449067707|ref|YP_007434789.1| - 4.4 7.2 9.7 1.1 9.1 0.6 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|449067707|ref|YP_007434789.1| - 5.3 8.2 6.3 18 6.5 0.9 2.5 1 1 1 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|449067707|ref|YP_007434789.1| - 6 7.5 9.6 0.85 10.2 1.1 2.6 3 0 0 3 3 2 0 Zinc finger, C2H2 type DUF4352 PF11611.8 gi|449067708|ref|YP_007434790.1| - 9.8e-05 22.6 2.8 0.00015 22.0 0.5 2.3 2 1 1 3 3 3 1 Domain of unknown function (DUF4352) Sugar_tr PF00083.24 gi|449067709|ref|YP_007434791.1| - 4.6e-21 75.2 47.7 9e-18 64.4 47.7 2.1 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067709|ref|YP_007434791.1| - 5e-16 58.6 58.2 5e-16 58.6 58.2 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF3094 PF11293.8 gi|449067709|ref|YP_007434791.1| - 0.063 13.0 1.2 0.55 10.0 1.2 2.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) Amino_oxidase PF01593.24 gi|449067710|ref|YP_007434792.1| - 6.1e-06 25.8 0.0 3.6e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase SQS_PSY PF00494.19 gi|449067712|ref|YP_007434794.1| - 1.6e-48 165.5 0.1 1.8e-48 165.3 0.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase BetaGal_dom3 PF13363.6 gi|449067715|ref|YP_007434797.1| - 0.0046 16.5 2.7 0.31 10.6 0.0 3.8 3 1 0 3 3 3 1 Beta-galactosidase, domain 3 DUF1533 PF07550.11 gi|449067715|ref|YP_007434797.1| - 0.043 13.7 0.5 0.47 10.4 0.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1533) HCV_NS4a PF01006.20 gi|449067715|ref|YP_007434797.1| - 0.075 12.8 8.3 0.37 10.6 1.8 3.5 4 0 0 4 4 4 0 Hepatitis C virus non-structural protein NS4a Aldedh PF00171.22 gi|449067716|ref|YP_007434798.1| - 1.3e-149 498.7 0.0 1.4e-149 498.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LPD23 PF18838.1 gi|449067716|ref|YP_007434798.1| - 0.17 11.7 0.0 0.38 10.6 0.0 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 23 Amidohydro_2 PF04909.14 gi|449067717|ref|YP_007434799.1| - 3.5e-47 161.6 0.1 4.1e-47 161.3 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase SprT-like PF10263.9 gi|449067718|ref|YP_007434800.1| - 0.084 12.7 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Hjc PF01870.18 gi|449067719|ref|YP_007434801.1| - 1.2e-28 98.9 0.1 1.9e-28 98.3 0.1 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|449067719|ref|YP_007434801.1| - 0.045 13.3 0.0 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 REase_AHJR-like Ald_Xan_dh_C2 PF02738.18 gi|449067720|ref|YP_007434802.1| - 4.8e-96 322.4 0.0 1.4e-95 320.8 0.0 1.6 2 0 0 2 2 2 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449067720|ref|YP_007434802.1| - 1.3e-22 80.2 0.0 4.1e-22 78.6 0.0 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TPP_enzyme_N PF02776.18 gi|449067721|ref|YP_007434803.1| - 3.3e-34 118.0 0.0 5.4e-34 117.3 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449067721|ref|YP_007434803.1| - 3.4e-14 52.9 0.0 6.8e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|449067721|ref|YP_007434803.1| - 5.7e-12 45.5 0.0 1.1e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF3311 PF11755.8 gi|449067722|ref|YP_007434804.1| - 5.8e-10 39.0 9.3 6.9e-10 38.7 9.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DctQ PF04290.12 gi|449067722|ref|YP_007434804.1| - 0.018 14.9 7.6 0.021 14.7 7.6 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF485 PF04341.12 gi|449067722|ref|YP_007434804.1| - 0.053 13.5 10.0 0.06 13.3 10.0 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF485 DUF997 PF06196.12 gi|449067722|ref|YP_007434804.1| - 2.6 8.1 9.5 3.5 7.7 9.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF997) SSF PF00474.17 gi|449067723|ref|YP_007434805.1| - 9.5e-17 60.9 33.6 9.5e-17 60.9 33.6 1.7 2 0 0 2 2 2 1 Sodium:solute symporter family TM140 PF14985.6 gi|449067723|ref|YP_007434805.1| - 8.1 6.0 13.5 0.074 12.6 1.3 3.1 2 1 0 2 2 2 0 TM140 protein family SoxE PF06525.11 gi|449067725|ref|YP_007434807.1| - 5.7e-77 256.3 9.2 1.1e-76 255.4 9.2 1.4 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain Arch_flagellin PF01917.16 gi|449067725|ref|YP_007434807.1| - 0.14 12.3 3.8 0.11 12.7 2.0 1.7 2 0 0 2 2 2 0 Archaebacterial flagellin DUF3446 PF11928.8 gi|449067725|ref|YP_007434807.1| - 6.7 7.1 26.3 1.7 9.0 9.3 2.7 3 0 0 3 3 3 0 Early growth response N-terminal domain Band_7 PF01145.25 gi|449067727|ref|YP_007434809.1| - 4e-20 72.6 1.7 6.5e-20 71.9 1.7 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|449067727|ref|YP_007434809.1| - 1.2e-13 51.2 0.4 4.3e-13 49.5 0.4 1.7 1 1 0 1 1 1 1 SPFH domain-Band 7 family TolA_bind_tri PF16331.5 gi|449067728|ref|YP_007434810.1| - 0.056 13.5 0.4 0.89 9.7 0.0 2.4 1 1 1 2 2 2 0 TolA binding protein trimerisation PLU-1 PF08429.11 gi|449067728|ref|YP_007434810.1| - 0.13 11.4 0.3 0.21 10.8 0.3 1.4 1 1 0 1 1 1 0 PLU-1-like protein MgtE_N PF03448.17 gi|449067729|ref|YP_007434811.1| - 0.0054 17.3 0.5 0.0084 16.7 0.5 1.4 1 1 0 1 1 1 1 MgtE intracellular N domain Tam41_Mmp37 PF09139.11 gi|449067729|ref|YP_007434811.1| - 0.016 14.7 0.1 0.017 14.6 0.1 1.0 1 0 0 1 1 1 0 Phosphatidate cytidylyltransferase, mitochondrial PRANC PF09372.10 gi|449067729|ref|YP_007434811.1| - 0.039 14.3 1.0 0.061 13.6 0.4 1.6 1 1 0 1 1 1 0 PRANC domain Hemerythrin PF01814.23 gi|449067730|ref|YP_007434812.1| - 0.072 13.7 0.0 0.32 11.6 0.0 2.0 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Gemini_mov PF01708.16 gi|449067732|ref|YP_007434814.1| - 0.0052 16.5 1.1 0.0073 16.0 1.1 1.1 1 0 0 1 1 1 1 Geminivirus putative movement protein LAB_N PF07578.11 gi|449067732|ref|YP_007434814.1| - 0.039 14.0 1.4 0.056 13.5 1.3 1.4 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain SLAC1 PF03595.17 gi|449067734|ref|YP_007434816.1| - 2.3e-37 129.0 35.2 3.3e-37 128.5 35.2 1.2 1 0 0 1 1 1 1 Voltage-dependent anion channel UDG PF03167.19 gi|449067735|ref|YP_007434817.1| - 1.5e-30 106.2 0.0 1.7e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Planc_extracel PF07595.12 gi|449067735|ref|YP_007434817.1| - 0.034 13.9 0.4 0.065 13.0 0.4 1.5 1 0 0 1 1 1 0 Planctomycete extracellular Peptidase_M20 PF01546.28 gi|449067736|ref|YP_007434818.1| - 8.1e-36 123.7 0.0 1.3e-35 123.0 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|449067736|ref|YP_007434818.1| - 1.6e-19 69.8 0.0 3.1e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Coagulase PF08764.10 gi|449067736|ref|YP_007434818.1| - 0.0028 17.9 0.2 0.005 17.1 0.2 1.3 1 0 0 1 1 1 1 Staphylococcus aureus coagulase DUF35_N PF12172.8 gi|449067737|ref|YP_007434819.1| - 4.1e-09 36.1 0.2 5.6e-09 35.7 0.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|449067737|ref|YP_007434819.1| - 0.00014 21.7 0.1 0.00051 20.0 0.1 1.9 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated FdhE PF04216.12 gi|449067737|ref|YP_007434819.1| - 0.0065 16.4 0.1 0.0082 16.1 0.1 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation zinc_ribbon_5 PF13719.6 gi|449067737|ref|YP_007434819.1| - 0.02 14.6 1.2 0.46 10.3 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|449067737|ref|YP_007434819.1| - 0.025 15.3 0.1 0.028 15.1 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|449067737|ref|YP_007434819.1| - 0.029 14.4 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF5374 PF17344.2 gi|449067737|ref|YP_007434819.1| - 0.036 14.0 0.4 0.22 11.5 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5374) TackOD1 PF18551.1 gi|449067737|ref|YP_007434819.1| - 0.051 13.3 0.4 0.07 12.8 0.4 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Thiolase_C PF02803.18 gi|449067738|ref|YP_007434820.1| - 9.1e-05 22.1 0.1 0.0016 18.1 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|449067738|ref|YP_007434820.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|449067738|ref|YP_007434820.1| - 0.11 12.4 0.0 0.39 10.6 0.0 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SBP_bac_5 PF00496.22 gi|449067739|ref|YP_007434821.1| - 7.4e-24 84.4 16.5 5.9e-15 55.1 3.9 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DAP10 PF07213.11 gi|449067739|ref|YP_007434821.1| - 0.19 11.7 0.9 0.39 10.7 0.9 1.5 1 0 0 1 1 1 0 DAP10 membrane protein Protocadherin PF08374.11 gi|449067739|ref|YP_007434821.1| - 0.88 9.5 2.5 8 6.4 1.1 2.1 2 0 0 2 2 2 0 Protocadherin DUF4982 PF16355.5 gi|449067740|ref|YP_007434822.1| - 0.044 13.7 0.0 13 5.8 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4982) BPD_transp_1 PF00528.22 gi|449067741|ref|YP_007434823.1| - 7.2e-31 107.4 20.2 7.2e-31 107.4 20.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|449067742|ref|YP_007434824.1| - 2.5e-19 69.7 16.6 2.5e-19 69.7 16.6 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|449067742|ref|YP_007434824.1| - 0.00025 20.9 1.2 0.00025 20.9 1.2 3.6 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|449067743|ref|YP_007434825.1| - 6.2e-25 88.3 0.0 9e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|449067743|ref|YP_007434825.1| - 1.8e-23 82.8 0.1 3.4e-23 82.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|449067743|ref|YP_007434825.1| - 5.8e-05 22.6 1.2 0.0017 17.9 1.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|449067743|ref|YP_007434825.1| - 9.9e-05 22.8 0.0 0.00019 21.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain PRK PF00485.18 gi|449067743|ref|YP_007434825.1| - 0.0002 21.1 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|449067743|ref|YP_007434825.1| - 0.0003 21.1 0.2 0.0023 18.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|449067743|ref|YP_007434825.1| - 0.0028 17.6 0.0 0.0067 16.4 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|449067743|ref|YP_007434825.1| - 0.0032 17.5 0.0 0.0059 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|449067743|ref|YP_007434825.1| - 0.013 15.4 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|449067743|ref|YP_007434825.1| - 0.02 14.9 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|449067743|ref|YP_007434825.1| - 0.024 14.4 0.0 0.051 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|449067743|ref|YP_007434825.1| - 0.024 15.0 0.1 0.071 13.5 0.0 1.9 2 1 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|449067743|ref|YP_007434825.1| - 0.024 13.8 0.4 0.036 13.2 0.4 1.5 1 1 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|449067743|ref|YP_007434825.1| - 0.037 13.0 0.0 0.066 12.2 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|449067743|ref|YP_007434825.1| - 0.068 13.1 1.1 0.2 11.6 0.2 2.1 2 0 0 2 2 2 0 NTPase Septin PF00735.18 gi|449067743|ref|YP_007434825.1| - 0.095 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Septin DUF87 PF01935.17 gi|449067743|ref|YP_007434825.1| - 0.12 12.5 0.2 0.64 10.1 0.1 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain NACHT PF05729.12 gi|449067743|ref|YP_007434825.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|449067744|ref|YP_007434826.1| - 2.8e-29 102.4 0.0 6.6e-29 101.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|449067744|ref|YP_007434826.1| - 3.2e-17 62.8 0.1 5.4e-17 62.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|449067744|ref|YP_007434826.1| - 2.4e-06 27.6 0.5 0.033 14.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449067744|ref|YP_007434826.1| - 0.0016 18.0 0.1 0.0027 17.2 0.1 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|449067744|ref|YP_007434826.1| - 0.0025 18.1 0.4 0.0077 16.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|449067744|ref|YP_007434826.1| - 0.003 18.0 0.1 0.0051 17.2 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|449067744|ref|YP_007434826.1| - 0.005 16.5 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|449067744|ref|YP_007434826.1| - 0.0056 15.9 0.1 0.013 14.7 0.1 1.6 2 0 0 2 2 2 1 NB-ARC domain PRK PF00485.18 gi|449067744|ref|YP_007434826.1| - 0.021 14.6 0.0 0.033 13.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RsgA_GTPase PF03193.16 gi|449067744|ref|YP_007434826.1| - 0.14 12.1 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|449067744|ref|YP_007434826.1| - 0.15 11.6 0.1 0.3 10.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TrwB_AAD_bind PF10412.9 gi|449067744|ref|YP_007434826.1| - 0.19 10.6 0.0 0.25 10.2 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain UbiA PF01040.18 gi|449067745|ref|YP_007434827.1| - 0.016 14.5 2.3 1.6 8.0 0.1 2.0 2 0 0 2 2 2 0 UbiA prenyltransferase family MMPL PF03176.15 gi|449067745|ref|YP_007434827.1| - 1.1 8.1 2.9 0.63 8.9 0.1 1.7 2 0 0 2 2 2 0 MMPL family FAA_hydrolase PF01557.18 gi|449067746|ref|YP_007434828.1| - 5.7e-71 238.7 0.0 7e-71 238.4 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Methyltransf_31 PF13847.6 gi|449067747|ref|YP_007434829.1| - 5.3e-17 62.0 0.0 5.9e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|449067747|ref|YP_007434829.1| - 6.2e-17 62.0 0.0 8.1e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067747|ref|YP_007434829.1| - 3.3e-15 56.5 0.0 4.4e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449067747|ref|YP_007434829.1| - 7.8e-10 38.5 0.0 1.1e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|449067747|ref|YP_007434829.1| - 3.1e-09 36.9 0.0 3.8e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|449067747|ref|YP_007434829.1| - 8.3e-09 36.1 0.0 1.1e-08 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|449067747|ref|YP_007434829.1| - 1.3e-06 28.3 0.0 1.8e-06 27.9 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|449067747|ref|YP_007434829.1| - 2.8e-05 23.7 0.0 3.8e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|449067747|ref|YP_007434829.1| - 3.2e-05 23.6 0.0 5e-05 22.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|449067747|ref|YP_007434829.1| - 4e-05 23.3 0.0 0.00056 19.6 0.0 1.9 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F TehB PF03848.14 gi|449067747|ref|YP_007434829.1| - 8.1e-05 22.1 0.0 0.00011 21.7 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB FtsJ PF01728.19 gi|449067747|ref|YP_007434829.1| - 0.00039 20.6 0.0 0.00066 19.8 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|449067747|ref|YP_007434829.1| - 0.0007 19.6 0.0 0.00096 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|449067747|ref|YP_007434829.1| - 0.00077 19.1 0.0 0.001 18.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GCD14 PF08704.10 gi|449067747|ref|YP_007434829.1| - 0.00098 18.9 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Met_10 PF02475.16 gi|449067747|ref|YP_007434829.1| - 0.0041 16.9 0.0 0.0048 16.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|449067747|ref|YP_007434829.1| - 0.01 15.7 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|449067747|ref|YP_007434829.1| - 0.019 13.5 0.0 0.023 13.3 0.0 1.0 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|449067747|ref|YP_007434829.1| - 0.034 14.0 0.0 0.19 11.6 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_4 PF02390.17 gi|449067747|ref|YP_007434829.1| - 0.036 13.5 0.0 0.43 10.0 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase CMAS PF02353.20 gi|449067747|ref|YP_007434829.1| - 0.05 12.9 0.0 0.057 12.7 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.18 gi|449067747|ref|YP_007434829.1| - 0.092 12.4 0.0 0.22 11.2 0.0 1.5 2 0 0 2 2 2 0 DNA methylase UPF0020 PF01170.18 gi|449067747|ref|YP_007434829.1| - 0.25 11.0 0.0 1.2 8.8 0.0 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Phosphoesterase PF04185.14 gi|449067748|ref|YP_007434830.1| - 7.3e-73 245.8 0.3 9.7e-73 245.4 0.3 1.2 1 0 0 1 1 1 1 Phosphoesterase family PaaA_PaaC PF05138.12 gi|449067749|ref|YP_007434831.1| - 5.7e-21 74.8 0.0 7.1e-21 74.5 0.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|449067749|ref|YP_007434831.1| - 0.042 13.5 0.0 0.083 12.6 0.0 1.5 1 1 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like MOEP19 PF16005.5 gi|449067749|ref|YP_007434831.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 KH-like RNA-binding domain PaaA_PaaC PF05138.12 gi|449067750|ref|YP_007434832.1| - 4.1e-29 101.5 0.0 5.1e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein DS PF01916.17 gi|449067750|ref|YP_007434832.1| - 0.24 10.6 0.0 0.42 9.8 0.0 1.3 1 0 0 1 1 1 0 Deoxyhypusine synthase ECH_1 PF00378.20 gi|449067751|ref|YP_007434833.1| - 1.7e-55 188.1 0.0 1.9e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|449067751|ref|YP_007434833.1| - 1.9e-30 106.5 0.0 1.1e-28 100.7 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase AAA_14 PF13173.6 gi|449067752|ref|YP_007434834.1| - 2.2e-22 79.5 0.2 1.2e-21 77.1 0.0 2.3 2 1 1 3 3 3 1 AAA domain DUF4143 PF13635.6 gi|449067752|ref|YP_007434834.1| - 4.2e-08 33.4 0.1 6.3e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_24 PF13479.6 gi|449067752|ref|YP_007434834.1| - 0.004 16.9 0.0 0.02 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|449067752|ref|YP_007434834.1| - 0.13 12.7 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|449067752|ref|YP_007434834.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|449067752|ref|YP_007434834.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AMP-binding PF00501.28 gi|449067753|ref|YP_007434835.1| - 2.7e-84 283.2 0.0 3.3e-84 282.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067753|ref|YP_007434835.1| - 4.7e-23 81.9 1.5 9.2e-23 81.0 1.5 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PaaX_C PF08223.11 gi|449067754|ref|YP_007434836.1| - 1.9e-32 111.5 0.1 3.3e-32 110.7 0.1 1.4 1 0 0 1 1 1 1 PaaX-like protein C-terminal domain PaaX PF07848.12 gi|449067754|ref|YP_007434836.1| - 3.8e-16 59.1 0.1 6.2e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 PaaX-like protein LexA_DNA_bind PF01726.16 gi|449067754|ref|YP_007434836.1| - 0.0068 16.2 0.0 0.028 14.2 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain DUF4313 PF14190.6 gi|449067754|ref|YP_007434836.1| - 0.027 14.5 0.1 0.083 12.9 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4313) CRISPR_Cas2 PF09827.9 gi|449067754|ref|YP_007434836.1| - 0.05 13.8 1.2 0.22 11.7 0.0 2.8 5 0 0 5 5 5 0 CRISPR associated protein Cas2 LZ3wCH PF18517.1 gi|449067754|ref|YP_007434836.1| - 0.089 12.9 0.4 0.24 11.5 0.4 1.7 1 0 0 1 1 1 0 Leucine zipper with capping helix domain GntR PF00392.21 gi|449067754|ref|YP_007434836.1| - 0.13 11.9 0.0 0.7 9.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family LptF_LptG PF03739.14 gi|449067755|ref|YP_007434837.1| - 0.0046 15.9 8.4 0.0046 15.9 8.4 1.5 1 1 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG Caveolin PF01146.17 gi|449067755|ref|YP_007434837.1| - 3.3 7.7 9.2 11 6.0 8.7 2.1 1 1 0 1 1 1 0 Caveolin Penicil_amidase PF01804.18 gi|449067756|ref|YP_007434838.1| - 5.5e-152 508.1 0.0 6.8e-152 507.8 0.0 1.0 1 0 0 1 1 1 1 Penicillin amidase DUF2553 PF10830.8 gi|449067756|ref|YP_007434838.1| - 0.12 13.2 0.1 0.27 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2553) Acyl-CoA_dh_1 PF00441.24 gi|449067757|ref|YP_007434839.1| - 3.1e-39 134.6 0.0 5.1e-39 133.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449067757|ref|YP_007434839.1| - 1.9e-13 50.4 0.0 3.5e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|449067757|ref|YP_007434839.1| - 3e-08 34.0 0.0 5.4e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 gi|449067757|ref|YP_007434839.1| - 3.7e-06 27.0 0.0 1e-05 25.6 0.0 1.7 2 0 0 2 2 2 1 Adaptive response protein AidB N-terminal domain AMP-binding PF00501.28 gi|449067758|ref|YP_007434840.1| - 2.1e-82 277.0 0.0 2.6e-82 276.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067758|ref|YP_007434840.1| - 1e-17 64.8 0.0 1.8e-17 64.1 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Peptidase_C15 PF01470.17 gi|449067759|ref|YP_007434841.1| - 1.9e-51 175.1 0.0 2.1e-51 175.0 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Amidohydro_1 PF01979.20 gi|449067760|ref|YP_007434842.1| - 1.2e-44 153.1 0.0 1.4e-44 152.9 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|449067760|ref|YP_007434842.1| - 1.3e-12 48.0 0.0 1.7e-08 34.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Sugar_tr PF00083.24 gi|449067761|ref|YP_007434843.1| - 5.2e-39 134.4 25.4 7e-39 133.9 25.4 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067761|ref|YP_007434843.1| - 3e-29 102.0 92.9 1.8e-25 89.6 53.2 3.5 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|449067761|ref|YP_007434843.1| - 0.0015 16.9 14.9 0.024 12.9 3.0 3.0 1 1 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family DUF485 PF04341.12 gi|449067761|ref|YP_007434843.1| - 0.01 15.7 0.0 0.01 15.7 0.0 4.0 3 1 1 4 4 4 0 Protein of unknown function, DUF485 Bac_export_2 PF01312.19 gi|449067761|ref|YP_007434843.1| - 0.24 10.6 1.4 0.56 9.3 0.7 2.0 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family ABC2_membrane_2 PF12679.7 gi|449067762|ref|YP_007434844.1| - 2.1e-18 66.6 32.5 1.5e-17 63.9 32.5 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.6 gi|449067762|ref|YP_007434844.1| - 3.7e-07 30.3 3.6 3.7e-07 30.3 3.6 2.6 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain ABC2_membrane_5 PF13346.6 gi|449067762|ref|YP_007434844.1| - 3.7e-05 23.4 24.7 3.7e-05 23.4 24.7 3.4 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|449067762|ref|YP_007434844.1| - 0.00013 22.0 15.7 0.00013 22.0 15.7 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein CarbopepD_reg_2 PF13715.6 gi|449067762|ref|YP_007434844.1| - 0.13 12.3 8.5 1.1 9.3 1.7 3.0 3 0 0 3 3 3 0 CarboxypepD_reg-like domain ABC2_membrane_3 PF12698.7 gi|449067762|ref|YP_007434844.1| - 0.89 8.6 45.0 4.1 6.4 44.9 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein B12-binding PF02310.19 gi|449067763|ref|YP_007434845.1| - 2.9e-20 72.5 0.1 1.9e-19 69.9 0.0 2.3 3 0 0 3 3 3 1 B12 binding domain Radical_SAM PF04055.21 gi|449067763|ref|YP_007434845.1| - 1.6e-15 57.8 0.0 4e-15 56.6 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|449067763|ref|YP_007434845.1| - 0.088 12.9 0.1 0.25 11.5 0.1 1.8 1 0 0 1 1 1 0 4Fe-4S single cluster domain PGG PF13962.6 gi|449067764|ref|YP_007434846.1| - 0.0016 18.3 2.3 0.0016 18.3 2.3 1.8 2 0 0 2 2 2 1 Domain of unknown function 7TM-7TMR_HD PF07698.11 gi|449067764|ref|YP_007434846.1| - 0.028 14.2 8.4 0.035 13.8 8.4 1.2 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF2633 PF11119.8 gi|449067764|ref|YP_007434846.1| - 0.034 14.1 0.0 0.072 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2633) DUF2678 PF10856.8 gi|449067764|ref|YP_007434846.1| - 1.2 9.1 9.3 0.15 12.0 3.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) MHYT PF03707.16 gi|449067764|ref|YP_007434846.1| - 1.5 9.0 7.3 1.1 9.5 1.1 2.6 1 1 2 3 3 3 0 Bacterial signalling protein N terminal repeat HTH_5 PF01022.20 gi|449067765|ref|YP_007434847.1| - 6.3e-11 42.0 0.8 7.5e-11 41.7 0.2 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|449067765|ref|YP_007434847.1| - 0.0011 18.9 0.6 0.002 18.0 0.4 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|449067765|ref|YP_007434847.1| - 0.0022 17.9 0.2 0.0051 16.7 0.0 1.7 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|449067765|ref|YP_007434847.1| - 0.0023 17.8 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449067765|ref|YP_007434847.1| - 0.0052 16.3 1.7 0.0056 16.2 0.1 1.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|449067765|ref|YP_007434847.1| - 0.0065 16.0 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_40 PF14493.6 gi|449067765|ref|YP_007434847.1| - 0.0069 16.8 0.3 0.0098 16.3 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|449067765|ref|YP_007434847.1| - 0.0098 15.9 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|449067765|ref|YP_007434847.1| - 0.048 13.8 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|449067765|ref|YP_007434847.1| - 0.059 12.3 0.1 0.064 12.2 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_9 PF08221.11 gi|449067765|ref|YP_007434847.1| - 0.061 13.4 0.5 0.19 11.8 0.1 1.9 1 1 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MSV199 PF10553.9 gi|449067765|ref|YP_007434847.1| - 0.09 13.0 2.0 0.12 12.6 2.0 1.2 1 0 0 1 1 1 0 MSV199 domain PIN PF01850.21 gi|449067768|ref|YP_007434850.1| - 5.6e-09 36.5 0.3 6.4e-09 36.4 0.3 1.0 1 0 0 1 1 1 1 PIN domain RHH_1 PF01402.21 gi|449067769|ref|YP_007434851.1| - 0.27 11.2 0.3 0.27 11.2 0.3 2.6 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family adh_short_C2 PF13561.6 gi|449067770|ref|YP_007434852.1| - 1.6e-65 220.9 0.0 2e-65 220.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449067770|ref|YP_007434852.1| - 1.1e-53 181.6 0.0 1.4e-53 181.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449067770|ref|YP_007434852.1| - 1.1e-08 35.2 0.0 2.4e-08 34.1 0.0 1.5 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.10 gi|449067770|ref|YP_007434852.1| - 5.2e-08 32.6 0.0 6.2e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|449067770|ref|YP_007434852.1| - 0.0018 17.8 0.1 0.0046 16.4 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|449067770|ref|YP_007434852.1| - 0.026 13.9 0.5 0.037 13.4 0.1 1.6 2 1 0 2 2 2 0 GDP-mannose 4,6 dehydratase 3HCDH_N PF02737.18 gi|449067770|ref|YP_007434852.1| - 0.055 13.3 0.1 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA_31 PF13614.6 gi|449067770|ref|YP_007434852.1| - 0.13 12.2 0.0 3.1 7.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain HTH_45 PF14947.6 gi|449067771|ref|YP_007434853.1| - 2.2e-17 62.8 3.2 2.5e-17 62.6 3.2 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|449067771|ref|YP_007434853.1| - 0.00051 19.8 0.7 0.00058 19.6 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) PI-TkoII_IV PF18714.1 gi|449067771|ref|YP_007434853.1| - 0.0079 15.7 0.2 0.011 15.2 0.1 1.4 1 1 0 1 1 1 1 DNA polymerase II intein Domain IV HTH_27 PF13463.6 gi|449067771|ref|YP_007434853.1| - 0.023 15.2 0.1 0.034 14.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4393 PF14337.6 gi|449067771|ref|YP_007434853.1| - 0.056 13.3 0.4 0.06 13.2 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) Ribosomal_S19e PF01090.19 gi|449067771|ref|YP_007434853.1| - 0.059 13.1 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e AAA_assoc_C PF09821.9 gi|449067771|ref|YP_007434853.1| - 0.073 13.6 0.0 0.23 12.0 0.0 1.7 1 1 1 2 2 2 0 C-terminal AAA-associated domain DIM PF08194.12 gi|449067772|ref|YP_007434854.1| - 0.29 11.4 4.7 1.6 9.0 0.1 2.6 2 0 0 2 2 2 0 DIM protein Peptidase_S24 PF00717.23 gi|449067773|ref|YP_007434855.1| - 4.3e-05 23.4 0.4 0.0001 22.2 0.4 1.6 1 0 0 1 1 1 1 Peptidase S24-like DUF5305 PF17231.2 gi|449067775|ref|YP_007434857.1| - 0.0086 15.5 13.0 0.0066 15.9 5.8 2.8 2 1 0 2 2 2 1 Family of unknown function (DUF5305) DUF2026 PF09641.10 gi|449067775|ref|YP_007434857.1| - 0.03 14.0 0.3 0.063 12.9 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) DRE2_N PF16803.5 gi|449067775|ref|YP_007434857.1| - 0.07 13.4 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Fe-S cluster assembly protein DRE2 N-terminus HTH_45 PF14947.6 gi|449067776|ref|YP_007434858.1| - 9.2e-17 60.8 0.4 1.3e-16 60.3 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|449067776|ref|YP_007434858.1| - 0.025 14.7 0.3 0.046 13.9 0.0 1.7 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|449067776|ref|YP_007434858.1| - 0.027 14.0 0.1 0.071 12.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HalX PF08663.10 gi|449067776|ref|YP_007434858.1| - 0.046 14.0 0.1 0.061 13.6 0.1 1.2 1 0 0 1 1 1 0 HalX domain DUF2721 PF11026.8 gi|449067777|ref|YP_007434859.1| - 0.01 15.7 0.2 0.017 15.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF2207 PF09972.9 gi|449067777|ref|YP_007434859.1| - 0.029 13.2 3.5 0.034 12.9 3.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Myb_DNA-bind_5 PF13873.6 gi|449067777|ref|YP_007434859.1| - 0.052 13.6 1.5 0.47 10.6 1.5 2.2 1 1 0 1 1 1 0 Myb/SANT-like DNA-binding domain Peptidase_M61 PF05299.12 gi|449067777|ref|YP_007434859.1| - 0.064 13.7 0.0 0.089 13.2 0.0 1.2 1 0 0 1 1 1 0 M61 glycyl aminopeptidase IclR PF01614.18 gi|449067777|ref|YP_007434859.1| - 0.14 12.0 0.1 0.21 11.4 0.1 1.3 1 0 0 1 1 1 0 Bacterial transcriptional regulator zf-CRD PF17979.1 gi|449067777|ref|YP_007434859.1| - 0.17 12.0 0.2 0.21 11.7 0.2 1.2 1 0 0 1 1 1 0 Cysteine rich domain with multizinc binding regions LysE PF01810.18 gi|449067778|ref|YP_007434860.1| - 0.0091 15.5 7.9 0.062 12.8 7.9 2.2 1 1 0 1 1 1 1 LysE type translocator DsbD_2 PF13386.6 gi|449067778|ref|YP_007434860.1| - 0.025 14.5 15.0 0.015 15.3 8.4 2.5 1 1 2 3 3 3 0 Cytochrome C biogenesis protein transmembrane region ABC_tran PF00005.27 gi|449067779|ref|YP_007434861.1| - 1.2e-28 100.3 0.0 2.2e-28 99.5 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|449067779|ref|YP_007434861.1| - 1.7e-15 57.6 2.6 1.4e-08 34.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|449067779|ref|YP_007434861.1| - 2.1e-05 24.5 0.0 3.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|449067779|ref|YP_007434861.1| - 2.5e-05 23.9 0.3 9.5e-05 22.1 0.2 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|449067779|ref|YP_007434861.1| - 0.00013 21.8 0.3 0.0025 17.6 0.3 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|449067779|ref|YP_007434861.1| - 0.00083 19.9 0.1 0.0016 19.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449067779|ref|YP_007434861.1| - 0.00097 19.4 0.4 0.02 15.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|449067779|ref|YP_007434861.1| - 0.0058 16.1 0.1 0.29 10.5 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|449067779|ref|YP_007434861.1| - 0.02 14.8 0.1 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|449067779|ref|YP_007434861.1| - 0.022 14.5 0.0 0.043 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|449067779|ref|YP_007434861.1| - 0.037 14.3 0.2 0.094 12.9 0.1 1.7 2 0 0 2 2 1 0 AAA domain IstB_IS21 PF01695.17 gi|449067779|ref|YP_007434861.1| - 0.052 13.3 0.0 0.51 10.0 0.0 2.3 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|449067779|ref|YP_007434861.1| - 0.056 14.0 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|449067779|ref|YP_007434861.1| - 0.065 13.7 0.1 0.17 12.3 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|449067779|ref|YP_007434861.1| - 0.096 13.1 0.0 0.17 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|449067779|ref|YP_007434861.1| - 0.1 12.6 0.1 0.21 11.6 0.1 1.6 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|449067779|ref|YP_007434861.1| - 0.13 11.9 0.2 0.28 10.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|449067779|ref|YP_007434861.1| - 0.19 11.4 0.1 0.36 10.4 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|449067779|ref|YP_007434861.1| - 0.21 11.0 0.1 0.34 10.3 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC2_membrane PF01061.24 gi|449067780|ref|YP_007434862.1| - 9.1e-15 54.6 26.2 2.1e-14 53.4 26.2 1.6 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|449067780|ref|YP_007434862.1| - 0.00024 20.3 28.2 0.00024 20.3 28.2 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein LapA_dom PF06305.11 gi|449067780|ref|YP_007434862.1| - 0.071 12.9 2.8 1.3 8.9 1.6 2.9 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF3742 PF12553.8 gi|449067780|ref|YP_007434862.1| - 0.78 9.9 4.0 0.57 10.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) Fer4_10 PF13237.6 gi|449067782|ref|YP_007434864.1| - 5.6e-07 29.6 7.4 8.7e-07 29.0 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449067782|ref|YP_007434864.1| - 2.8e-05 24.0 10.1 0.021 14.9 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|449067782|ref|YP_007434864.1| - 4.7e-05 23.9 7.8 4.7e-05 23.9 7.8 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449067782|ref|YP_007434864.1| - 0.0014 18.3 11.9 0.067 13.0 0.5 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|449067782|ref|YP_007434864.1| - 0.0028 17.8 5.8 0.0028 17.8 5.8 1.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|449067782|ref|YP_007434864.1| - 0.028 14.5 1.8 0.028 14.5 1.8 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|449067782|ref|YP_007434864.1| - 0.12 12.1 5.9 0.088 12.6 1.5 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|449067782|ref|YP_007434864.1| - 0.13 12.4 8.0 0.45 10.7 8.0 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449067782|ref|YP_007434864.1| - 0.21 12.6 7.3 2.2 9.3 0.1 2.4 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|449067782|ref|YP_007434864.1| - 0.27 11.4 14.2 0.12 12.5 2.3 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|449067782|ref|YP_007434864.1| - 0.41 11.7 11.8 2.3 9.4 4.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|449067782|ref|YP_007434864.1| - 0.74 10.4 9.4 66 4.2 9.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain AIM24 PF01987.17 gi|449067783|ref|YP_007434865.1| - 2.4e-51 174.4 2.7 2.7e-51 174.2 2.7 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF2173 PF09941.9 gi|449067784|ref|YP_007434866.1| - 1.3e-38 131.5 0.7 1.5e-38 131.4 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) MS_channel PF00924.18 gi|449067785|ref|YP_007434867.1| - 3.5e-24 85.5 3.1 3.5e-24 85.5 3.1 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel Haemagg_act PF05860.13 gi|449067785|ref|YP_007434867.1| - 0.093 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 haemagglutination activity domain DUF2975 PF11188.8 gi|449067785|ref|YP_007434867.1| - 0.82 9.5 12.0 1.6 8.6 1.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) MFS_1 PF07690.16 gi|449067786|ref|YP_007434868.1| - 3e-20 72.5 36.7 8.7e-12 44.6 19.4 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067786|ref|YP_007434868.1| - 3.3e-20 72.4 22.2 4.7e-17 62.0 11.9 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|449067786|ref|YP_007434868.1| - 3.5e-07 29.1 21.1 0.00017 20.3 5.8 2.7 1 1 1 2 2 2 2 MFS/sugar transport protein FGFR3_TM PF18123.1 gi|449067786|ref|YP_007434868.1| - 0.022 14.3 9.2 0.61 9.7 1.2 3.1 2 0 0 2 2 2 0 Fibroblast growth factor receptor 3 transmembrane domain Lactamase_B PF00753.27 gi|449067787|ref|YP_007434869.1| - 3.9e-26 92.3 0.1 4.5e-26 92.1 0.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|449067787|ref|YP_007434869.1| - 0.0015 18.1 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|449067787|ref|YP_007434869.1| - 0.025 14.0 0.0 0.054 12.9 0.0 1.5 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain CbiQ PF02361.16 gi|449067789|ref|YP_007434871.1| - 2.3e-19 69.9 12.8 2.3e-19 69.9 12.8 2.0 3 0 0 3 3 3 1 Cobalt transport protein ABC_tran PF00005.27 gi|449067790|ref|YP_007434872.1| - 4.9e-48 163.1 0.0 9.3e-23 81.3 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|449067790|ref|YP_007434872.1| - 1.8e-17 64.2 0.0 2e-05 24.6 0.0 4.1 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|449067790|ref|YP_007434872.1| - 5.7e-12 46.6 0.0 5.2e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|449067790|ref|YP_007434872.1| - 3.2e-11 43.1 2.6 6.5e-05 22.5 0.3 3.8 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|449067790|ref|YP_007434872.1| - 1.3e-09 37.6 0.6 0.00011 21.8 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|449067790|ref|YP_007434872.1| - 2.7e-07 31.1 0.0 0.00069 20.0 0.0 2.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.6 gi|449067790|ref|YP_007434872.1| - 1.1e-06 28.6 0.0 0.0002 21.2 0.0 3.2 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|449067790|ref|YP_007434872.1| - 1.4e-06 28.6 0.7 0.16 12.2 0.5 3.3 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|449067790|ref|YP_007434872.1| - 1.6e-06 27.9 0.3 0.018 14.7 0.0 2.8 2 1 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|449067790|ref|YP_007434872.1| - 2.8e-06 27.3 1.1 0.065 13.1 0.1 2.7 3 0 0 3 3 2 2 RsgA GTPase NTPase_1 PF03266.15 gi|449067790|ref|YP_007434872.1| - 1e-05 25.5 2.5 0.13 12.1 0.1 3.2 3 0 0 3 3 3 2 NTPase AAA_25 PF13481.6 gi|449067790|ref|YP_007434872.1| - 1.1e-05 25.1 0.1 0.12 11.9 0.0 3.1 3 0 0 3 3 3 2 AAA domain NACHT PF05729.12 gi|449067790|ref|YP_007434872.1| - 4.9e-05 23.3 0.2 0.34 10.8 0.1 2.5 2 0 0 2 2 2 2 NACHT domain IstB_IS21 PF01695.17 gi|449067790|ref|YP_007434872.1| - 7.3e-05 22.6 0.2 0.52 10.0 0.0 3.2 3 0 0 3 3 3 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|449067790|ref|YP_007434872.1| - 0.00011 21.7 0.3 0.011 15.2 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|449067790|ref|YP_007434872.1| - 0.00027 20.8 1.0 0.13 12.1 0.1 3.2 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_7 PF12775.7 gi|449067790|ref|YP_007434872.1| - 0.0003 20.3 2.3 0.29 10.6 0.0 3.2 3 0 0 3 3 3 1 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|449067790|ref|YP_007434872.1| - 0.00068 19.4 0.6 0.43 10.3 0.1 3.4 4 0 0 4 4 3 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|449067790|ref|YP_007434872.1| - 0.00077 20.0 2.2 1 9.9 0.0 3.5 4 0 0 4 4 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|449067790|ref|YP_007434872.1| - 0.00095 18.6 0.1 0.77 9.1 0.1 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|449067790|ref|YP_007434872.1| - 0.0016 18.5 3.5 1 9.4 0.4 3.1 2 1 0 2 2 2 2 50S ribosome-binding GTPase ATPase PF06745.13 gi|449067790|ref|YP_007434872.1| - 0.0021 17.5 0.2 0.24 10.7 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA_24 PF13479.6 gi|449067790|ref|YP_007434872.1| - 0.0026 17.5 3.0 1.5 8.5 0.1 3.0 3 0 0 3 3 2 2 AAA domain T2SSE PF00437.20 gi|449067790|ref|YP_007434872.1| - 0.0034 16.5 1.4 0.68 8.9 0.2 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA PF00004.29 gi|449067790|ref|YP_007434872.1| - 0.0038 17.6 0.5 0.35 11.3 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|449067790|ref|YP_007434872.1| - 0.0041 17.5 0.5 2.7 8.4 0.0 2.7 2 0 0 2 2 2 1 RNA helicase AAA_27 PF13514.6 gi|449067790|ref|YP_007434872.1| - 0.0043 16.7 0.3 0.046 13.3 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|449067790|ref|YP_007434872.1| - 0.0051 17.0 0.2 1.8 8.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|449067790|ref|YP_007434872.1| - 0.006 16.6 0.2 0.66 10.0 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DLIC PF05783.11 gi|449067790|ref|YP_007434872.1| - 0.0064 15.4 0.4 1.1 8.0 0.1 2.2 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) Rad17 PF03215.15 gi|449067790|ref|YP_007434872.1| - 0.0076 16.2 0.3 4.3 7.2 0.0 3.0 3 0 0 3 3 3 0 Rad17 P-loop domain SbcCD_C PF13558.6 gi|449067790|ref|YP_007434872.1| - 0.009 16.2 0.1 0.66 10.2 0.0 3.2 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|449067790|ref|YP_007434872.1| - 0.015 14.5 0.1 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.17 gi|449067790|ref|YP_007434872.1| - 0.016 15.3 1.3 1.6 8.8 0.2 2.9 3 0 0 3 3 2 0 Helicase HerA, central domain Herpes_Helicase PF02689.14 gi|449067790|ref|YP_007434872.1| - 0.029 12.3 0.3 2.8 5.8 0.1 2.1 2 0 0 2 2 2 0 Helicase SRP54 PF00448.22 gi|449067790|ref|YP_007434872.1| - 0.032 13.9 1.1 0.24 11.0 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|449067790|ref|YP_007434872.1| - 0.034 13.9 4.1 4.7 6.9 0.1 3.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein ATP-synt_ab PF00006.25 gi|449067790|ref|YP_007434872.1| - 0.039 13.6 0.0 2.5 7.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PRK PF00485.18 gi|449067790|ref|YP_007434872.1| - 0.043 13.6 1.9 6.3 6.5 0.1 2.6 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.6 gi|449067790|ref|YP_007434872.1| - 0.049 14.0 3.6 18 5.7 0.1 3.7 3 1 1 4 4 4 0 AAA domain ABC_ATPase PF09818.9 gi|449067790|ref|YP_007434872.1| - 0.061 12.1 4.0 1.9 7.2 0.1 3.4 4 0 0 4 4 4 0 Predicted ATPase of the ABC class TniB PF05621.11 gi|449067790|ref|YP_007434872.1| - 0.061 12.7 1.1 14 5.0 0.0 3.3 4 0 0 4 4 4 0 Bacterial TniB protein Zeta_toxin PF06414.12 gi|449067790|ref|YP_007434872.1| - 0.065 12.5 1.6 7.8 5.7 0.0 2.6 3 0 0 3 3 2 0 Zeta toxin DUF815 PF05673.13 gi|449067790|ref|YP_007434872.1| - 0.067 12.3 0.1 1.2 8.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ATP_bind_2 PF03668.15 gi|449067790|ref|YP_007434872.1| - 0.071 12.4 1.9 4.9 6.4 0.1 2.4 2 0 0 2 2 2 0 P-loop ATPase protein family Sigma54_activat PF00158.26 gi|449067790|ref|YP_007434872.1| - 0.072 12.8 0.1 0.77 9.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.14 gi|449067790|ref|YP_007434872.1| - 0.073 13.1 0.5 7.6 6.5 0.1 2.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|449067790|ref|YP_007434872.1| - 0.083 12.1 0.7 7 5.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) APS_kinase PF01583.20 gi|449067790|ref|YP_007434872.1| - 0.11 12.4 0.9 1.8 8.4 0.1 2.5 2 0 0 2 2 2 0 Adenylylsulphate kinase cobW PF02492.19 gi|449067790|ref|YP_007434872.1| - 0.17 11.4 1.9 11 5.6 0.2 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|449067790|ref|YP_007434872.1| - 0.18 12.1 5.4 1.1 9.5 0.2 2.5 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|449067790|ref|YP_007434872.1| - 0.53 8.9 1.5 5 5.7 0.0 2.8 4 0 0 4 4 4 0 AAA domain DEAD PF00270.29 gi|449067790|ref|YP_007434872.1| - 1.4 8.7 3.3 9.3 6.0 0.2 2.9 2 2 0 2 2 2 0 DEAD/DEAH box helicase CbiA PF01656.23 gi|449067790|ref|YP_007434872.1| - 2.7 8.0 5.4 8.4 6.5 0.9 2.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain M PF02370.16 gi|449067792|ref|YP_007434874.1| - 0.0025 18.1 2.1 0.0025 18.1 2.1 2.2 3 0 0 3 3 3 1 M protein repeat PSK_trans_fac PF07704.11 gi|449067792|ref|YP_007434874.1| - 0.0042 17.8 1.0 0.014 16.2 1.0 1.7 1 1 0 1 1 1 1 Rv0623-like transcription factor LEM PF03020.15 gi|449067792|ref|YP_007434874.1| - 0.018 14.6 0.0 0.018 14.6 0.0 2.2 3 0 0 3 3 3 0 LEM domain Vps53_N PF04100.12 gi|449067792|ref|YP_007434874.1| - 0.026 13.5 0.2 0.026 13.5 0.2 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal YpjP PF14005.6 gi|449067792|ref|YP_007434874.1| - 0.04 14.0 0.3 0.045 13.8 0.3 1.1 1 0 0 1 1 1 0 YpjP-like protein Propep_M14 PF02244.16 gi|449067792|ref|YP_007434874.1| - 0.073 13.5 0.1 1.1 9.7 0.2 2.0 2 0 0 2 2 2 0 Carboxypeptidase activation peptide UvrB PF12344.8 gi|449067792|ref|YP_007434874.1| - 0.16 11.8 1.3 0.35 10.8 1.2 1.6 1 1 0 1 1 1 0 Ultra-violet resistance protein B Histone_HNS PF00816.21 gi|449067792|ref|YP_007434874.1| - 0.18 12.7 2.2 9.4 7.1 0.0 2.0 1 1 1 2 2 2 0 H-NS histone family PIN PF01850.21 gi|449067793|ref|YP_007434875.1| - 0.00074 20.0 0.7 0.0012 19.3 0.7 1.4 1 1 0 1 1 1 1 PIN domain CMD PF02627.20 gi|449067794|ref|YP_007434876.1| - 4.3e-24 84.4 0.0 5.3e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Glyco_hydro_15 PF00723.21 gi|449067797|ref|YP_007434879.1| - 2.5e-44 151.8 0.3 1.3e-40 139.6 0.2 2.9 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_19 PF14559.6 gi|449067797|ref|YP_007434879.1| - 0.00078 19.9 0.0 0.0037 17.7 0.0 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|449067797|ref|YP_007434879.1| - 0.0037 17.7 0.1 0.021 15.4 0.1 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|449067797|ref|YP_007434879.1| - 0.0072 16.4 0.7 0.046 13.8 0.1 2.5 3 0 0 3 3 3 1 Tetratricopeptide repeat Glyco_hydro_125 PF06824.11 gi|449067797|ref|YP_007434879.1| - 0.0092 14.9 0.1 2.9 6.7 0.0 2.3 2 0 0 2 2 2 2 Metal-independent alpha-mannosidase (GH125) TPR_8 PF13181.6 gi|449067797|ref|YP_007434879.1| - 0.011 15.8 0.0 0.043 14.0 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|449067797|ref|YP_007434879.1| - 0.042 14.5 0.1 0.11 13.2 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|449067797|ref|YP_007434879.1| - 0.046 13.9 0.0 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_MalT PF17874.1 gi|449067797|ref|YP_007434879.1| - 0.084 12.2 0.0 3.7 6.8 0.0 2.1 2 0 0 2 2 2 0 MalT-like TPR region TPR_10 PF13374.6 gi|449067797|ref|YP_007434879.1| - 0.11 12.4 0.1 0.24 11.4 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|449067797|ref|YP_007434879.1| - 0.12 13.3 0.2 0.35 11.8 0.0 1.8 2 0 0 2 2 1 0 Tetratricopeptide repeat OFeT_1 PF16955.5 gi|449067799|ref|YP_007434881.1| - 9e-106 352.2 21.3 1e-105 352.0 21.3 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter DUF2681 PF10883.8 gi|449067799|ref|YP_007434881.1| - 0.014 15.8 0.4 0.071 13.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) DUF3185 PF11381.8 gi|449067799|ref|YP_007434881.1| - 0.089 12.8 5.3 0.091 12.8 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF4229 PF14012.6 gi|449067799|ref|YP_007434881.1| - 0.12 12.5 0.5 0.12 12.5 0.5 3.4 2 1 1 4 4 4 0 Protein of unknown function (DUF4229) Frizzled PF01534.17 gi|449067799|ref|YP_007434881.1| - 0.47 9.5 4.9 0.21 10.6 0.3 2.0 1 1 0 2 2 2 0 Frizzled/Smoothened family membrane region DUF4079 PF13301.6 gi|449067799|ref|YP_007434881.1| - 1.1 9.4 5.5 2.4 8.3 5.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) MFS_1 PF07690.16 gi|449067800|ref|YP_007434882.1| - 1.1e-21 77.2 53.2 2.2e-12 46.6 26.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily EamA PF00892.20 gi|449067801|ref|YP_007434883.1| - 1.1e-15 58.0 42.2 8e-12 45.5 17.2 2.5 2 1 0 2 2 2 2 EamA-like transporter family Nramp PF01566.18 gi|449067802|ref|YP_007434884.1| - 1.6e-32 112.8 18.1 2.2e-32 112.4 18.1 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein YwiC PF14256.6 gi|449067802|ref|YP_007434884.1| - 9.7 6.5 17.7 0.4 11.0 3.5 3.5 2 1 0 2 2 2 0 YwiC-like protein Ferritin PF00210.24 gi|449067803|ref|YP_007434885.1| - 4.6e-24 85.0 0.4 5.9e-24 84.6 0.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF4439 PF14530.6 gi|449067803|ref|YP_007434885.1| - 0.041 14.6 0.1 1.4 9.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4439) Rubrerythrin PF02915.17 gi|449067803|ref|YP_007434885.1| - 0.049 14.0 0.2 0.093 13.1 0.2 1.5 1 1 0 1 1 1 0 Rubrerythrin Ferritin_2 PF13668.6 gi|449067803|ref|YP_007434885.1| - 0.071 13.3 0.0 0.12 12.6 0.0 1.4 1 1 0 1 1 1 0 Ferritin-like domain COQ7 PF03232.13 gi|449067803|ref|YP_007434885.1| - 0.09 12.5 0.0 0.29 10.9 0.0 1.7 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Rieske PF00355.26 gi|449067804|ref|YP_007434886.1| - 3.6e-13 49.3 0.0 4.2e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|449067804|ref|YP_007434886.1| - 0.01 15.8 0.0 0.013 15.4 0.0 1.3 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain Thioredoxin PF00085.20 gi|449067805|ref|YP_007434887.1| - 8.8e-24 83.5 0.0 1.2e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|449067805|ref|YP_007434887.1| - 1.9e-07 31.5 0.1 1.6e-05 25.3 0.1 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|449067805|ref|YP_007434887.1| - 9.1e-05 22.7 0.0 0.0012 19.2 0.0 2.3 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.10 gi|449067805|ref|YP_007434887.1| - 0.00011 21.9 0.0 0.00019 21.1 0.0 1.5 1 1 0 1 1 1 1 Redoxin Thioredoxin_9 PF14595.6 gi|449067805|ref|YP_007434887.1| - 0.0015 18.3 0.0 0.0022 17.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|449067805|ref|YP_007434887.1| - 0.0022 18.0 0.0 0.0055 16.7 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|449067805|ref|YP_007434887.1| - 0.0031 17.4 0.0 0.018 15.0 0.0 1.8 1 1 1 2 2 2 1 AhpC/TSA family OST3_OST6 PF04756.13 gi|449067805|ref|YP_007434887.1| - 0.026 13.9 0.0 0.038 13.3 0.0 1.3 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family TraF PF13728.6 gi|449067805|ref|YP_007434887.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 F plasmid transfer operon protein Endonuc_Holl PF10107.9 gi|449067806|ref|YP_007434888.1| - 4.4e-62 208.7 6.4 6e-62 208.2 6.4 1.1 1 0 0 1 1 1 1 Endonuclease related to archaeal Holliday junction resolvase PIN_8 PF18476.1 gi|449067806|ref|YP_007434888.1| - 0.0056 16.6 2.7 0.0056 16.6 2.7 1.9 2 0 0 2 2 2 1 PIN like domain eIF3_p135 PF12807.7 gi|449067806|ref|YP_007434888.1| - 0.021 14.9 2.1 0.038 14.0 2.1 1.5 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit 135 O-antigen_lig PF13425.6 gi|449067806|ref|YP_007434888.1| - 0.026 13.4 2.7 0.042 12.6 2.7 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Death PF00531.22 gi|449067806|ref|YP_007434888.1| - 0.033 14.3 2.7 2.8 8.2 1.2 2.3 1 1 1 2 2 2 0 Death domain DUF929 PF06053.11 gi|449067806|ref|YP_007434888.1| - 0.055 12.8 0.8 0.16 11.2 1.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF929) OATP PF03137.20 gi|449067806|ref|YP_007434888.1| - 0.063 11.6 0.3 0.079 11.2 0.3 1.1 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family HTH_48 PF17906.1 gi|449067806|ref|YP_007434888.1| - 0.11 12.6 0.2 0.31 11.2 0.0 1.8 2 0 0 2 2 1 0 HTH domain in Mos1 transposase HK97-gp10_like PF04883.12 gi|449067806|ref|YP_007434888.1| - 0.12 13.4 0.7 0.12 13.4 0.7 2.0 2 1 1 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component EphA2_TM PF14575.6 gi|449067806|ref|YP_007434888.1| - 0.12 13.3 0.2 0.21 12.5 0.2 1.4 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain UCH PF00443.29 gi|449067806|ref|YP_007434888.1| - 0.44 10.0 1.8 0.56 9.7 1.8 1.1 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase Phage_Gp23 PF10669.9 gi|449067806|ref|YP_007434888.1| - 3.4 8.0 12.0 0.2 12.0 6.5 1.7 2 0 0 2 2 2 0 Protein gp23 (Bacteriophage A118) DUF4382 PF14321.6 gi|449067807|ref|YP_007434889.1| - 1.6e-11 44.6 0.0 2e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) Glycos_transf_1 PF00534.20 gi|449067809|ref|YP_007434891.1| - 4e-23 81.8 0.0 7.1e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067809|ref|YP_007434891.1| - 1.2e-08 35.4 0.0 1.8e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|449067809|ref|YP_007434891.1| - 0.00012 22.4 0.0 0.00019 21.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 IL11 PF07400.11 gi|449067809|ref|YP_007434891.1| - 0.19 11.4 0.0 0.41 10.3 0.0 1.5 1 0 0 1 1 1 0 Interleukin 11 AA_permease PF00324.21 gi|449067810|ref|YP_007434892.1| - 4.3e-17 61.9 50.4 1.1e-16 60.5 50.4 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|449067810|ref|YP_007434892.1| - 3.7e-15 55.7 54.7 4.8e-15 55.3 54.7 1.1 1 0 0 1 1 1 1 Amino acid permease PspB PF06667.12 gi|449067810|ref|YP_007434892.1| - 0.26 11.4 1.9 11 6.2 0.0 3.1 2 0 0 2 2 2 0 Phage shock protein B DUF2250 PF10007.9 gi|449067811|ref|YP_007434893.1| - 2.3e-05 24.4 0.4 7.1e-05 22.8 0.4 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF2513 PF10711.9 gi|449067811|ref|YP_007434893.1| - 0.022 15.1 0.0 0.038 14.3 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) Hydrolase_4 PF12146.8 gi|449067812|ref|YP_007434894.1| - 5.4e-15 55.3 0.0 1.6e-11 43.9 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|449067812|ref|YP_007434894.1| - 3.3e-13 49.9 0.1 3.2e-11 43.4 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|449067812|ref|YP_007434894.1| - 5.2e-09 37.0 0.0 4.5e-08 34.0 0.0 1.8 1 1 1 2 2 2 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|449067812|ref|YP_007434894.1| - 0.021 13.5 0.0 0.035 12.8 0.0 1.4 1 1 0 1 1 1 0 Ndr family FSH1 PF03959.13 gi|449067812|ref|YP_007434894.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DUF2250 PF10007.9 gi|449067813|ref|YP_007434895.1| - 7.3e-69 228.0 15.7 6.8e-37 125.5 3.5 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|449067813|ref|YP_007434895.1| - 1.5e-05 24.8 1.0 0.0018 18.0 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) DUF3116 PF11313.8 gi|449067813|ref|YP_007434895.1| - 0.00033 20.5 1.3 0.93 9.4 0.1 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF3116) Phage_rep_org_N PF09681.10 gi|449067813|ref|YP_007434895.1| - 0.0016 18.4 0.6 0.61 10.0 0.1 2.2 1 1 1 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.19 gi|449067813|ref|YP_007434895.1| - 0.0017 18.2 0.8 0.049 13.5 0.0 3.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|449067813|ref|YP_007434895.1| - 0.033 14.3 0.4 0.092 12.9 0.1 1.9 2 0 0 2 2 2 0 Ferric uptake regulator family DUF501 PF04417.12 gi|449067813|ref|YP_007434895.1| - 0.038 13.8 2.3 6.4 6.6 0.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF501) Cdc6_C PF09079.11 gi|449067813|ref|YP_007434895.1| - 0.095 12.7 1.3 0.38 10.8 0.0 2.7 2 2 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_27 PF13463.6 gi|449067813|ref|YP_007434895.1| - 0.13 12.7 8.5 0.54 10.8 0.2 3.7 4 0 0 4 4 4 0 Winged helix DNA-binding domain CxxCxxCC PF03692.15 gi|449067815|ref|YP_007434897.1| - 6.9e-07 29.9 0.4 1.2e-06 29.1 0.4 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Sigma70_r3 PF04539.16 gi|449067815|ref|YP_007434897.1| - 0.021 14.9 0.1 0.043 13.9 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 DrsE PF02635.15 gi|449067817|ref|YP_007434899.1| - 0.0022 18.3 0.0 0.0031 17.9 0.0 1.2 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF4141 PF13605.6 gi|449067817|ref|YP_007434899.1| - 0.18 11.1 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4141) MFS_1 PF07690.16 gi|449067818|ref|YP_007434900.1| - 1.7e-28 99.6 56.6 1.7e-16 60.1 27.4 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067818|ref|YP_007434900.1| - 2e-27 96.2 39.2 7.7e-19 67.9 13.8 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|449067818|ref|YP_007434900.1| - 1.5e-10 40.2 14.0 1.5e-10 40.2 14.0 2.5 2 1 0 2 2 2 2 MFS/sugar transport protein TNFR_16_TM PF18422.1 gi|449067818|ref|YP_007434900.1| - 0.024 14.6 0.4 0.024 14.6 0.4 2.5 3 0 0 3 3 3 0 Tumor necrosis factor receptor member 16 trans-membrane domain PsbI PF02532.14 gi|449067818|ref|YP_007434900.1| - 0.64 10.0 4.4 1.3 9.0 0.1 3.1 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) OATP PF03137.20 gi|449067818|ref|YP_007434900.1| - 0.9 7.7 11.0 1.5 7.0 5.5 2.5 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Amidohydro_1 PF01979.20 gi|449067819|ref|YP_007434901.1| - 1.6e-53 182.2 0.1 2.1e-53 181.9 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|449067819|ref|YP_007434901.1| - 1.1e-20 74.6 0.2 1e-12 48.3 0.0 2.1 1 1 0 2 2 2 2 Amidohydrolase family AP_endonuc_2 PF01261.24 gi|449067819|ref|YP_007434901.1| - 0.014 14.9 0.0 0.059 12.8 0.0 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Urocanase_C PF17392.2 gi|449067819|ref|YP_007434901.1| - 0.15 11.5 0.6 0.49 9.8 0.2 2.0 3 0 0 3 3 3 0 Urocanase C-terminal domain Aminotran_1_2 PF00155.21 gi|449067820|ref|YP_007434902.1| - 6e-54 183.6 0.0 7.4e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|449067820|ref|YP_007434902.1| - 6.7e-13 48.3 0.0 1.1e-12 47.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|449067820|ref|YP_007434902.1| - 3.5e-08 32.4 0.0 3.7e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|449067820|ref|YP_007434902.1| - 1.3e-06 27.6 0.1 1.7e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Allinase DegT_DnrJ_EryC1 PF01041.17 gi|449067820|ref|YP_007434902.1| - 0.00016 21.1 0.0 0.00026 20.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|449067820|ref|YP_007434902.1| - 0.00071 18.9 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|449067820|ref|YP_007434902.1| - 0.17 10.6 0.1 0.33 9.6 0.1 1.6 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Ald_Xan_dh_C2 PF02738.18 gi|449067821|ref|YP_007434903.1| - 6.2e-118 394.6 0.0 1.5e-90 304.2 0.0 2.1 1 1 1 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449067821|ref|YP_007434903.1| - 2e-15 57.1 0.2 8.3e-15 55.1 0.0 2.0 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CitMHS PF03600.16 gi|449067822|ref|YP_007434904.1| - 4.1e-38 131.3 12.8 4.1e-38 131.3 12.8 2.0 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|449067822|ref|YP_007434904.1| - 1.1e-13 51.1 33.4 4.1e-10 39.3 11.4 2.5 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|449067822|ref|YP_007434904.1| - 3.5e-11 42.8 0.7 3.2e-07 30.1 0.0 2.7 2 0 0 2 2 2 2 TrkA-C domain DsbD_2 PF13386.6 gi|449067823|ref|YP_007434905.1| - 0.02 14.8 8.3 0.029 14.3 8.3 1.4 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Na_H_Exchanger PF00999.21 gi|449067824|ref|YP_007434906.1| - 1.9e-31 109.2 46.7 2.3e-31 108.9 46.7 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|449067824|ref|YP_007434906.1| - 4.4e-14 52.7 3.1 1.3e-07 31.9 0.6 2.7 2 0 0 2 2 2 2 CBS domain Tfb5 PF06331.12 gi|449067824|ref|YP_007434906.1| - 0.011 15.7 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 Transcription factor TFIIH complex subunit Tfb5 HGTP_anticodon PF03129.20 gi|449067824|ref|YP_007434906.1| - 0.17 12.0 1.2 12 6.1 0.1 2.3 1 1 1 2 2 2 0 Anticodon binding domain DUF5518 PF17647.1 gi|449067824|ref|YP_007434906.1| - 0.31 11.2 33.4 0.54 10.4 3.4 4.2 3 1 1 4 4 4 0 Family of unknown function (DUF5518) PDDEXK_10 PF07788.11 gi|449067825|ref|YP_007434907.1| - 1.5e-30 104.9 5.3 1.5e-30 104.9 5.3 2.2 2 1 1 3 3 3 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|449067825|ref|YP_007434907.1| - 9.4e-22 77.0 8.5 1.7e-19 69.8 8.1 3.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) MIF4G_like_2 PF09090.11 gi|449067825|ref|YP_007434907.1| - 0.053 13.0 3.9 0.073 12.5 3.9 1.2 1 0 0 1 1 1 0 MIF4G like DUF4143 PF13635.6 gi|449067825|ref|YP_007434907.1| - 0.089 12.9 3.6 0.33 11.1 0.1 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4143) SEEK1 PF15357.6 gi|449067825|ref|YP_007434907.1| - 0.14 12.3 3.3 0.57 10.3 3.3 1.9 1 1 0 1 1 1 0 Psoriasis susceptibility 1 candidate 1 DUF1779 PF08680.10 gi|449067825|ref|YP_007434907.1| - 0.37 10.9 6.2 1.6 8.9 4.2 2.1 1 1 1 2 2 2 0 TATA-box binding Ribonucleas_3_3 PF14622.6 gi|449067825|ref|YP_007434907.1| - 1.3 9.2 6.3 22 5.2 5.8 2.6 2 1 0 2 2 2 0 Ribonuclease-III-like Toxin_36 PF10550.9 gi|449067825|ref|YP_007434907.1| - 2.9 9.4 14.9 5.6e+02 2.4 0.2 7.1 2 1 5 7 7 7 0 Conantokin-G mollusc-toxin SelB-wing_1 PF09105.10 gi|449067825|ref|YP_007434907.1| - 5.3 7.1 6.2 7.9 6.5 1.2 2.6 2 1 1 3 3 3 0 Elongation factor SelB, winged helix Cyclase PF04199.13 gi|449067826|ref|YP_007434908.1| - 2.3e-05 24.7 0.1 3.4e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 Putative cyclase Cyclase PF04199.13 gi|449067827|ref|YP_007434909.1| - 9.9e-05 22.6 0.0 0.00012 22.4 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase Thermopsin PF05317.11 gi|449067829|ref|YP_007434911.1| - 9e-78 261.3 25.8 9e-78 261.3 25.8 6.1 3 2 2 6 6 6 1 Thermopsin KSHV_K1 PF11049.8 gi|449067829|ref|YP_007434911.1| - 0.085 12.8 3.9 3.1 7.8 0.1 4.1 3 0 0 3 3 3 0 Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus GATase_6 PF13522.6 gi|449067830|ref|YP_007434912.1| - 6e-08 33.0 0.0 1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|449067830|ref|YP_007434912.1| - 0.00015 20.8 0.0 0.00023 20.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II MFS_1 PF07690.16 gi|449067831|ref|YP_007434913.1| - 1.4e-22 80.1 47.7 1.4e-22 80.1 47.7 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067831|ref|YP_007434913.1| - 9.6e-20 70.9 38.4 4.1e-15 55.6 15.1 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter Glyco_hydro_1 PF00232.18 gi|449067832|ref|YP_007434914.1| - 1.8e-62 211.2 4.0 2e-54 184.7 1.4 2.8 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|449067832|ref|YP_007434914.1| - 7.5e-05 22.3 0.3 0.00016 21.2 0.3 1.5 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) DUF1648 PF07853.11 gi|449067833|ref|YP_007434915.1| - 0.00044 19.8 2.8 0.00087 18.9 0.4 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1648) GntR PF00392.21 gi|449067834|ref|YP_007434916.1| - 8.1e-18 63.8 0.0 1.2e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.6 gi|449067834|ref|YP_007434916.1| - 3.1e-05 23.6 0.0 0.00042 20.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|449067834|ref|YP_007434916.1| - 3.3e-05 23.8 0.0 6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|449067834|ref|YP_007434916.1| - 0.0032 17.3 0.4 0.012 15.5 0.2 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|449067834|ref|YP_007434916.1| - 0.04 13.6 0.0 0.083 12.6 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|449067834|ref|YP_007434916.1| - 0.058 13.4 0.0 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain ClpB_D2-small PF10431.9 gi|449067834|ref|YP_007434916.1| - 0.077 13.1 0.3 1.7 8.8 0.0 2.6 3 0 0 3 3 3 0 C-terminal, D2-small domain, of ClpB protein MarR PF01047.22 gi|449067834|ref|YP_007434916.1| - 0.081 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family RPA_C PF08784.11 gi|449067834|ref|YP_007434916.1| - 0.12 13.0 0.1 0.27 11.9 0.0 1.6 2 0 0 2 2 2 0 Replication protein A C terminal SdpI PF13630.6 gi|449067835|ref|YP_007434917.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family Glyco_hydro_12 PF01670.16 gi|449067836|ref|YP_007434918.1| - 1e-17 64.9 2.3 1.9e-17 64.0 2.3 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 MG2 PF01835.19 gi|449067837|ref|YP_007434919.1| - 0.008 16.6 3.5 1.1 9.8 0.0 4.1 4 0 0 4 4 4 1 MG2 domain DUF2140 PF09911.9 gi|449067837|ref|YP_007434919.1| - 0.011 15.4 5.4 0.014 15.0 0.1 2.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2140) MGC-24 PF05283.11 gi|449067837|ref|YP_007434919.1| - 0.018 15.5 3.7 0.018 15.5 3.7 2.0 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin TMEM154 PF15102.6 gi|449067837|ref|YP_007434919.1| - 0.033 14.1 4.3 0.11 12.4 4.3 1.9 1 0 0 1 1 1 0 TMEM154 protein family DUF4448 PF14610.6 gi|449067837|ref|YP_007434919.1| - 0.045 13.5 1.4 0.094 12.5 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) SBF PF01758.16 gi|449067837|ref|YP_007434919.1| - 0.63 9.7 5.5 0.11 12.1 0.2 2.3 2 0 0 2 2 2 0 Sodium Bile acid symporter family DUF3823_C PF18003.1 gi|449067837|ref|YP_007434919.1| - 1.7 9.4 9.4 0.94 10.2 4.4 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3823_C) DUF5383 PF17355.2 gi|449067837|ref|YP_007434919.1| - 2 8.8 8.8 0.036 14.4 1.7 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5383) Glycophorin_A PF01102.18 gi|449067837|ref|YP_007434919.1| - 7.4 6.9 7.2 1.5 9.0 2.5 2.2 2 0 0 2 2 2 0 Glycophorin A DUF973 PF06157.11 gi|449067839|ref|YP_007434921.1| - 4.4e-86 288.7 43.6 7e-86 288.1 43.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|449067839|ref|YP_007434921.1| - 0.26 11.6 42.0 0.051 13.9 12.2 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF996) DUF973 PF06157.11 gi|449067841|ref|YP_007434923.1| - 2.2e-97 325.9 56.4 4.3e-97 324.9 56.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Aldedh PF00171.22 gi|449067842|ref|YP_007434924.1| - 2.4e-164 547.3 0.1 2.7e-164 547.1 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family EB_dh PF09459.10 gi|449067843|ref|YP_007434925.1| - 8.7e-30 104.5 0.0 1.5e-29 103.7 0.0 1.4 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Rieske PF00355.26 gi|449067845|ref|YP_007434927.1| - 1.7e-08 34.3 0.1 1.7e-07 31.1 0.1 2.1 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.6 gi|449067846|ref|YP_007434928.1| - 5.9e-55 185.8 6.4 5.9e-55 185.8 6.4 3.6 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|449067846|ref|YP_007434928.1| - 5.3e-23 81.8 15.6 5.3e-23 81.8 15.6 2.6 2 0 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|449067846|ref|YP_007434928.1| - 2.5e-05 24.5 1.6 2.5e-05 24.5 1.6 3.7 5 0 0 5 5 5 1 Cytochrome b(C-terminal)/b6/petD DUF4079 PF13301.6 gi|449067846|ref|YP_007434928.1| - 0.025 14.7 1.7 0.025 14.7 1.7 3.2 4 1 0 4 4 4 0 Protein of unknown function (DUF4079) ABM PF03992.16 gi|449067847|ref|YP_007434929.1| - 2.8e-14 53.0 0.0 3.2e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.11 gi|449067847|ref|YP_007434929.1| - 0.00014 20.9 0.7 0.022 13.6 0.1 2.1 1 1 1 2 2 2 2 Sulphur oxygenase reductase DDE_Tnp_1_6 PF13751.6 gi|449067848|ref|YP_007434930.1| - 0.01 16.0 0.1 0.014 15.6 0.1 1.2 1 0 0 1 1 1 0 Transposase DDE domain Cas6_N PF17952.1 gi|449067849|ref|YP_007434931.1| - 2e-35 121.5 0.2 3.1e-35 120.9 0.2 1.3 1 0 0 1 1 1 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|449067849|ref|YP_007434931.1| - 9.5e-18 64.6 0.0 1.6e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Ets PF00178.22 gi|449067849|ref|YP_007434931.1| - 0.035 14.6 0.0 0.066 13.7 0.0 1.5 1 0 0 1 1 1 0 Ets-domain Glycos_transf_2 PF00535.26 gi|449067850|ref|YP_007434932.1| - 5e-15 55.7 0.2 6.5e-15 55.3 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|449067850|ref|YP_007434932.1| - 2.6e-06 27.5 0.0 6e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Galactosyl_T PF01762.21 gi|449067850|ref|YP_007434932.1| - 0.17 11.7 0.9 0.28 11.0 0.9 1.3 1 0 0 1 1 1 0 Galactosyltransferase HRG PF16954.5 gi|449067852|ref|YP_007434934.1| - 0.21 12.0 4.1 9 6.8 0.2 2.4 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene DUF16 PF01519.16 gi|449067853|ref|YP_007434935.1| - 8.2e-06 26.3 11.9 0.0044 17.5 3.0 2.7 1 1 1 2 2 2 2 Protein of unknown function DUF16 HBM PF16591.5 gi|449067853|ref|YP_007434935.1| - 1.5e-05 24.6 5.0 9.2e-05 22.0 5.0 2.0 1 1 0 1 1 1 1 Helical bimodular sensor domain Fib_alpha PF08702.10 gi|449067853|ref|YP_007434935.1| - 3.3e-05 24.1 9.1 0.0055 16.9 1.5 2.4 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF3782 PF12644.7 gi|449067853|ref|YP_007434935.1| - 3.5e-05 23.9 4.6 0.00035 20.6 0.2 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) Bacillus_HBL PF05791.11 gi|449067853|ref|YP_007434935.1| - 5.9e-05 23.0 6.7 0.00018 21.4 2.9 2.2 1 1 1 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) TMF_DNA_bd PF12329.8 gi|449067853|ref|YP_007434935.1| - 7.7e-05 22.6 16.4 0.0073 16.3 3.3 3.0 2 1 1 3 3 2 2 TATA element modulatory factor 1 DNA binding DUF948 PF06103.11 gi|449067853|ref|YP_007434935.1| - 0.00015 21.9 6.6 0.00053 20.2 1.4 2.3 1 1 2 3 3 3 3 Bacterial protein of unknown function (DUF948) SlyX PF04102.12 gi|449067853|ref|YP_007434935.1| - 0.00021 21.9 7.0 0.065 13.9 1.1 2.6 1 1 1 2 2 2 2 SlyX DUF1664 PF07889.12 gi|449067853|ref|YP_007434935.1| - 0.00043 20.3 8.7 0.006 16.6 5.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) ALMT PF11744.8 gi|449067853|ref|YP_007434935.1| - 0.0005 19.0 1.7 0.00067 18.6 1.7 1.3 1 0 0 1 1 1 1 Aluminium activated malate transporter Spc7 PF08317.11 gi|449067853|ref|YP_007434935.1| - 0.00052 19.0 9.0 0.00074 18.5 9.0 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein EzrA PF06160.12 gi|449067853|ref|YP_007434935.1| - 0.00092 17.5 5.3 0.0013 17.0 5.3 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA NPV_P10 PF05531.12 gi|449067853|ref|YP_007434935.1| - 0.001 19.5 4.4 0.16 12.5 0.8 2.9 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein HMMR_N PF15905.5 gi|449067853|ref|YP_007434935.1| - 0.002 17.7 8.7 0.0031 17.0 8.7 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF3584 PF12128.8 gi|449067853|ref|YP_007434935.1| - 0.0021 15.7 5.0 0.0025 15.4 5.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) FliJ PF02050.16 gi|449067853|ref|YP_007434935.1| - 0.0024 18.1 9.5 0.19 12.0 1.4 2.4 1 1 1 2 2 2 1 Flagellar FliJ protein Atg14 PF10186.9 gi|449067853|ref|YP_007434935.1| - 0.0025 17.0 7.5 0.0034 16.5 7.5 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|449067853|ref|YP_007434935.1| - 0.0026 17.4 2.4 0.0033 17.0 2.4 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit Lebercilin PF15619.6 gi|449067853|ref|YP_007434935.1| - 0.003 17.2 8.8 0.0054 16.4 8.5 1.5 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF2383 PF09537.10 gi|449067853|ref|YP_007434935.1| - 0.0033 17.8 6.7 1.9 8.9 0.3 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF2383) ATG16 PF08614.11 gi|449067853|ref|YP_007434935.1| - 0.0038 17.5 9.2 0.021 15.0 8.0 2.0 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) AAA_13 PF13166.6 gi|449067853|ref|YP_007434935.1| - 0.0042 15.8 8.8 0.0087 14.8 8.8 1.4 1 1 0 1 1 1 1 AAA domain CC2-LZ PF16516.5 gi|449067853|ref|YP_007434935.1| - 0.0044 17.4 7.3 0.097 13.0 0.8 2.5 1 1 1 2 2 2 1 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator FH2 PF02181.23 gi|449067853|ref|YP_007434935.1| - 0.0051 16.0 4.9 0.0091 15.2 4.9 1.3 1 0 0 1 1 1 1 Formin Homology 2 Domain ALIX_LYPXL_bnd PF13949.6 gi|449067853|ref|YP_007434935.1| - 0.0051 16.1 7.1 0.007 15.7 7.1 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prominin PF05478.11 gi|449067853|ref|YP_007434935.1| - 0.0058 14.7 2.9 0.0076 14.3 2.9 1.2 1 0 0 1 1 1 1 Prominin ISG65-75 PF11727.8 gi|449067853|ref|YP_007434935.1| - 0.006 15.9 4.7 0.0088 15.3 4.7 1.3 1 0 0 1 1 1 1 Invariant surface glycoprotein V_ATPase_I PF01496.19 gi|449067853|ref|YP_007434935.1| - 0.0065 14.5 2.0 0.0067 14.4 2.0 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Spc29 PF17082.5 gi|449067853|ref|YP_007434935.1| - 0.0074 16.2 7.0 0.56 10.0 1.3 2.3 1 1 1 2 2 2 1 Spindle Pole Component 29 DASH_Duo1 PF08651.10 gi|449067853|ref|YP_007434935.1| - 0.0075 16.0 6.9 0.42 10.4 0.3 2.7 2 1 0 3 3 2 1 DASH complex subunit Duo1 CorA PF01544.18 gi|449067853|ref|YP_007434935.1| - 0.0087 15.4 2.6 0.016 14.5 2.6 1.4 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein PhageMin_Tail PF10145.9 gi|449067853|ref|YP_007434935.1| - 0.0087 15.9 4.2 0.46 10.3 0.3 2.8 1 1 0 2 2 2 1 Phage-related minor tail protein DUF812 PF05667.11 gi|449067853|ref|YP_007434935.1| - 0.0089 15.0 9.9 0.014 14.4 9.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF812) TPR_MLP1_2 PF07926.12 gi|449067853|ref|YP_007434935.1| - 0.011 15.8 8.2 0.011 15.8 8.2 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|449067853|ref|YP_007434935.1| - 0.011 16.0 8.6 0.4 11.0 4.7 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.21 gi|449067853|ref|YP_007434935.1| - 0.012 15.4 7.7 0.12 12.2 7.3 2.1 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Vps53_N PF04100.12 gi|449067853|ref|YP_007434935.1| - 0.014 14.4 4.7 0.024 13.6 4.7 1.6 1 0 0 1 1 1 0 Vps53-like, N-terminal DUF713 PF05218.14 gi|449067853|ref|YP_007434935.1| - 0.014 15.1 2.4 0.021 14.5 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF713) Phasin_2 PF09361.10 gi|449067853|ref|YP_007434935.1| - 0.014 15.6 3.3 1.2 9.5 1.1 2.5 1 1 1 2 2 2 0 Phasin protein DUF1759 PF03564.15 gi|449067853|ref|YP_007434935.1| - 0.015 15.2 2.1 0.081 12.9 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) FmiP_Thoc5 PF09766.9 gi|449067853|ref|YP_007434935.1| - 0.017 14.4 8.6 0.19 11.0 1.7 2.1 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 UPF0242 PF06785.11 gi|449067853|ref|YP_007434935.1| - 0.017 15.2 10.0 0.037 14.1 10.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CCDC85 PF10226.9 gi|449067853|ref|YP_007434935.1| - 0.018 14.7 5.6 0.023 14.4 2.2 2.2 1 1 1 2 2 2 0 CCDC85 family GAS PF13851.6 gi|449067853|ref|YP_007434935.1| - 0.024 14.0 9.2 0.073 12.4 9.2 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding LXG PF04740.12 gi|449067853|ref|YP_007434935.1| - 0.024 14.3 6.6 0.11 12.1 6.6 1.9 1 1 0 1 1 1 0 LXG domain of WXG superfamily Mer2 PF09074.10 gi|449067853|ref|YP_007434935.1| - 0.031 14.1 6.9 0.049 13.4 6.9 1.3 1 0 0 1 1 1 0 Mer2 DUF4618 PF15397.6 gi|449067853|ref|YP_007434935.1| - 0.036 13.5 9.6 0.061 12.7 9.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) APG17 PF04108.12 gi|449067853|ref|YP_007434935.1| - 0.04 13.0 6.5 0.098 11.7 6.5 1.6 1 1 0 1 1 1 0 Autophagy protein Apg17 Helo_like_N PF17111.5 gi|449067853|ref|YP_007434935.1| - 0.04 13.3 3.0 0.25 10.7 2.7 2.0 1 1 0 1 1 1 0 Fungal N-terminal domain of STAND proteins FUSC-like PF12805.7 gi|449067853|ref|YP_007434935.1| - 0.041 13.0 1.3 0.06 12.4 1.3 1.3 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS FlaC_arch PF05377.11 gi|449067853|ref|YP_007434935.1| - 0.044 14.2 5.3 3 8.3 0.8 3.1 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF2959 PF11172.8 gi|449067853|ref|YP_007434935.1| - 0.046 13.9 4.1 1.2 9.3 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) PhaP_Bmeg PF09602.10 gi|449067853|ref|YP_007434935.1| - 0.048 13.6 8.7 0.41 10.6 2.7 2.3 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) ADIP PF11559.8 gi|449067853|ref|YP_007434935.1| - 0.048 13.7 9.6 0.28 11.3 8.8 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding IFT57 PF10498.9 gi|449067853|ref|YP_007434935.1| - 0.048 12.6 6.3 0.083 11.8 6.3 1.4 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Pinin_SDK_N PF04697.13 gi|449067853|ref|YP_007434935.1| - 0.053 14.2 0.7 1 10.0 0.1 2.5 2 0 0 2 2 2 0 pinin/SDK conserved region Csm1_N PF18504.1 gi|449067853|ref|YP_007434935.1| - 0.055 13.8 11.4 2 8.8 2.9 3.0 1 1 0 2 2 2 0 Csm1 N-terminal domain TEX13 PF15186.6 gi|449067853|ref|YP_007434935.1| - 0.055 13.1 6.2 0.57 9.8 3.7 2.3 1 1 1 2 2 2 0 Testis-expressed sequence 13 protein family DUF4795 PF16043.5 gi|449067853|ref|YP_007434935.1| - 0.06 13.0 9.5 1 8.9 1.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Senescence PF06911.12 gi|449067853|ref|YP_007434935.1| - 0.06 13.7 0.3 0.09 13.1 0.3 1.4 1 0 0 1 1 1 0 Senescence-associated protein MitMem_reg PF13012.6 gi|449067853|ref|YP_007434935.1| - 0.064 13.7 5.9 7.6 7.0 5.7 3.0 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function Fusion_gly PF00523.18 gi|449067853|ref|YP_007434935.1| - 0.065 11.5 3.3 2.5 6.3 0.5 2.1 1 1 0 2 2 2 0 Fusion glycoprotein F0 Vps51 PF08700.11 gi|449067853|ref|YP_007434935.1| - 0.067 13.3 4.2 3 8.0 2.8 2.5 1 1 1 2 2 2 0 Vps51/Vps67 PspA_IM30 PF04012.12 gi|449067853|ref|YP_007434935.1| - 0.079 12.5 9.4 0.13 11.8 9.4 1.3 1 0 0 1 1 1 0 PspA/IM30 family Rab5-bind PF09311.11 gi|449067853|ref|YP_007434935.1| - 0.085 12.2 10.8 0.46 9.8 2.6 2.2 1 1 1 2 2 2 0 Rabaptin-like protein BAG6 PF12057.8 gi|449067853|ref|YP_007434935.1| - 0.089 12.5 0.3 0.17 11.6 0.2 1.6 1 1 0 1 1 1 0 BCL2-associated athanogene 6 TMP_2 PF06791.13 gi|449067853|ref|YP_007434935.1| - 0.091 12.4 2.5 0.16 11.6 1.9 1.6 1 1 0 1 1 1 0 Prophage tail length tape measure protein Fez1 PF06818.15 gi|449067853|ref|YP_007434935.1| - 0.092 13.2 6.8 0.15 12.5 6.8 1.4 1 0 0 1 1 1 0 Fez1 Syntaxin-6_N PF09177.11 gi|449067853|ref|YP_007434935.1| - 0.099 13.2 4.8 3.2 8.4 4.8 2.7 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Retrotrans_gag PF03732.17 gi|449067853|ref|YP_007434935.1| - 0.11 12.8 0.6 1.6 9.1 0.0 2.4 1 1 1 2 2 2 0 Retrotransposon gag protein Peptidase_S46 PF10459.9 gi|449067853|ref|YP_007434935.1| - 0.11 11.1 2.5 0.14 10.8 2.5 1.1 1 0 0 1 1 1 0 Peptidase S46 FlgN PF05130.12 gi|449067853|ref|YP_007434935.1| - 0.11 13.0 10.5 0.051 14.1 7.2 1.9 1 1 0 1 1 1 0 FlgN protein Glypican PF01153.19 gi|449067853|ref|YP_007434935.1| - 0.11 11.3 1.2 0.16 10.8 1.2 1.1 1 0 0 1 1 1 0 Glypican TMPIT PF07851.13 gi|449067853|ref|YP_007434935.1| - 0.12 11.6 7.3 0.24 10.6 7.0 1.7 1 1 1 2 2 2 0 TMPIT-like protein ATG_C PF09333.11 gi|449067853|ref|YP_007434935.1| - 0.12 12.7 2.0 5.1 7.5 0.1 2.8 1 1 1 2 2 2 0 Autophagy-related protein C terminal domain RPW8 PF05659.11 gi|449067853|ref|YP_007434935.1| - 0.12 12.0 5.1 0.54 9.9 1.4 2.3 1 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 CmlA_N PF18456.1 gi|449067853|ref|YP_007434935.1| - 0.12 11.6 0.7 0.2 10.9 0.7 1.5 1 0 0 1 1 1 0 Diiron non-heme beta-hydroxylase N-terminal domain Prefoldin PF02996.17 gi|449067853|ref|YP_007434935.1| - 0.13 12.2 9.1 0.24 11.3 1.4 2.9 1 1 3 4 4 4 0 Prefoldin subunit SMBP PF16785.5 gi|449067853|ref|YP_007434935.1| - 0.15 12.3 7.1 1.6 8.9 6.2 2.3 1 1 1 2 2 2 0 Small metal-binding protein COG5 PF10392.9 gi|449067853|ref|YP_007434935.1| - 0.15 12.2 7.2 1.8 8.7 1.3 2.8 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Fmp27_WPPW PF10359.9 gi|449067853|ref|YP_007434935.1| - 0.16 10.8 4.2 0.28 10.0 4.2 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain NEMO PF11577.8 gi|449067853|ref|YP_007434935.1| - 0.21 11.6 3.5 1.8 8.6 1.1 3.5 1 1 1 2 2 2 0 NF-kappa-B essential modulator NEMO Cauli_AT PF03233.13 gi|449067853|ref|YP_007434935.1| - 0.22 11.5 8.7 0.41 10.6 4.0 2.4 1 1 1 2 2 2 0 Aphid transmission protein CREPT PF16566.5 gi|449067853|ref|YP_007434935.1| - 0.22 11.7 5.7 0.79 9.9 5.7 1.8 1 1 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour JAKMIP_CC3 PF16034.5 gi|449067853|ref|YP_007434935.1| - 0.27 11.2 12.8 0.27 11.2 3.7 2.2 1 1 1 2 2 2 0 JAKMIP CC3 domain Corona_S2 PF01601.16 gi|449067853|ref|YP_007434935.1| - 0.29 9.6 2.3 0.76 8.2 2.2 1.7 1 1 0 1 1 1 0 Coronavirus S2 glycoprotein Sec34 PF04136.15 gi|449067853|ref|YP_007434935.1| - 0.32 10.9 5.5 0.99 9.3 3.1 2.5 1 1 2 3 3 3 0 Sec34-like family YkyA PF10368.9 gi|449067853|ref|YP_007434935.1| - 0.34 10.6 10.5 1 9.0 10.3 2.0 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Tweety PF04906.13 gi|449067853|ref|YP_007434935.1| - 0.34 9.5 2.2 0.47 9.0 2.2 1.2 1 0 0 1 1 1 0 Tweety DUF4407 PF14362.6 gi|449067853|ref|YP_007434935.1| - 0.34 10.2 6.2 0.64 9.3 6.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Spectrin PF00435.21 gi|449067853|ref|YP_007434935.1| - 0.37 11.3 9.0 4.4 7.8 2.3 2.3 1 1 1 2 2 2 0 Spectrin repeat BRE1 PF08647.11 gi|449067853|ref|YP_007434935.1| - 0.41 10.8 8.4 5.8 7.1 1.2 2.5 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase DUF2312 PF10073.9 gi|449067853|ref|YP_007434935.1| - 0.41 10.3 6.2 9.2 6.0 0.6 3.3 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Tektin PF03148.14 gi|449067853|ref|YP_007434935.1| - 0.42 9.3 8.2 1 8.0 8.2 1.5 1 1 0 1 1 1 0 Tektin family ZapD PF07072.11 gi|449067853|ref|YP_007434935.1| - 0.52 10.0 5.3 0.64 9.7 2.6 2.0 1 1 1 2 2 2 0 Cell division protein Occludin_ELL PF07303.13 gi|449067853|ref|YP_007434935.1| - 0.61 10.8 3.9 2.5 8.9 0.3 2.8 1 1 2 3 3 2 0 Occludin homology domain COG2 PF06148.11 gi|449067853|ref|YP_007434935.1| - 0.75 9.9 6.9 3.2 7.9 3.0 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Sec8_exocyst PF04048.14 gi|449067853|ref|YP_007434935.1| - 0.78 9.6 6.7 2.8 7.8 0.5 2.3 2 1 1 3 3 2 0 Sec8 exocyst complex component specific domain HemX PF04375.14 gi|449067853|ref|YP_007434935.1| - 0.86 8.8 10.5 3.3 6.9 10.5 1.8 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase TMF_TATA_bd PF12325.8 gi|449067853|ref|YP_007434935.1| - 0.92 9.7 10.4 3.9 7.7 10.1 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding GP41 PF00517.17 gi|449067853|ref|YP_007434935.1| - 0.94 9.3 4.5 2.4 8.0 0.4 2.3 1 1 1 2 2 2 0 Retroviral envelope protein DUF641 PF04859.12 gi|449067853|ref|YP_007434935.1| - 0.96 9.8 9.0 8.5 6.7 0.6 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Laminin_II PF06009.12 gi|449067853|ref|YP_007434935.1| - 1.3 9.1 9.4 4.7 7.2 8.1 2.3 1 1 1 2 2 2 0 Laminin Domain II Med4 PF10018.9 gi|449067853|ref|YP_007434935.1| - 1.3 8.7 7.6 3.5 7.3 2.7 2.3 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 XhlA PF10779.9 gi|449067853|ref|YP_007434935.1| - 1.4 9.2 7.1 1.9 8.7 0.6 2.8 1 1 2 3 3 3 0 Haemolysin XhlA DUF2570 PF10828.8 gi|449067853|ref|YP_007434935.1| - 1.4 8.7 10.2 1.9 8.4 7.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) Seryl_tRNA_N PF02403.22 gi|449067853|ref|YP_007434935.1| - 1.5 9.1 11.4 9.9 6.4 11.5 2.3 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain LPP PF04728.13 gi|449067853|ref|YP_007434935.1| - 1.9 8.9 6.8 7.2 7.1 1.1 3.4 2 2 2 4 4 3 0 Lipoprotein leucine-zipper zf-C4H2 PF10146.9 gi|449067853|ref|YP_007434935.1| - 2 8.7 9.6 1.4 9.2 5.8 1.8 1 1 1 2 2 2 0 Zinc finger-containing protein Rx_N PF18052.1 gi|449067853|ref|YP_007434935.1| - 2 8.7 5.8 16 5.9 2.5 2.7 1 1 1 2 2 2 0 Rx N-terminal domain DUF4298 PF14131.6 gi|449067853|ref|YP_007434935.1| - 2.2 8.3 6.9 3.8 7.6 0.5 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4298) DUF5595 PF18077.1 gi|449067853|ref|YP_007434935.1| - 2.2 8.4 6.6 1.3 9.2 0.7 3.1 2 1 2 4 4 3 0 Domain of unknown function (DUF5595) Tropomyosin_1 PF12718.7 gi|449067853|ref|YP_007434935.1| - 2.3 8.4 11.0 9.4 6.4 2.7 2.3 1 1 1 2 2 2 0 Tropomyosin like DUF2203 PF09969.9 gi|449067853|ref|YP_007434935.1| - 2.6 8.8 7.8 14 6.4 6.5 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) YabA PF06156.13 gi|449067853|ref|YP_007434935.1| - 5 7.8 6.7 13 6.5 1.1 2.7 1 1 1 2 2 2 0 Initiation control protein YabA Med9 PF07544.13 gi|449067853|ref|YP_007434935.1| - 5.1 7.3 10.5 11 6.2 3.7 2.8 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Exo_endo_phos PF03372.23 gi|449067855|ref|YP_007434937.1| - 0.068 12.7 0.0 0.078 12.5 0.0 1.1 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family Pkinase PF00069.25 gi|449067857|ref|YP_007434939.1| - 9.7e-31 107.1 0.0 2.2e-30 105.9 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|449067857|ref|YP_007434939.1| - 6.3e-14 51.9 0.0 4.7e-13 49.0 0.0 2.3 1 1 0 1 1 1 1 Protein tyrosine kinase Exonuc_VII_S PF02609.16 gi|449067857|ref|YP_007434939.1| - 0.00071 19.6 0.0 0.0031 17.5 0.0 2.1 2 0 0 2 2 2 1 Exonuclease VII small subunit Kdo PF06293.14 gi|449067857|ref|YP_007434939.1| - 0.12 11.7 0.0 0.31 10.4 0.0 1.6 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family RcpC PF16976.5 gi|449067858|ref|YP_007434940.1| - 0.0064 16.5 0.2 0.016 15.3 0.2 1.7 1 1 0 1 1 1 1 Flp pilus assembly protein RcpC/CpaB DUF1132 PF06575.12 gi|449067860|ref|YP_007434942.1| - 0.13 12.7 0.0 0.15 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1132) DEAD PF00270.29 gi|449067861|ref|YP_007434943.1| - 2.1e-06 27.7 0.0 9.2e-05 22.3 0.0 2.5 2 1 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|449067861|ref|YP_007434943.1| - 0.00021 21.3 0.0 0.0011 19.0 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|449067861|ref|YP_007434943.1| - 0.0087 16.4 0.0 0.029 14.7 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Phage_ASH PF10554.9 gi|449067861|ref|YP_007434943.1| - 0.027 14.8 0.0 0.056 13.8 0.0 1.6 1 0 0 1 1 1 0 Ash protein family DUF1357 PF07094.11 gi|449067861|ref|YP_007434943.1| - 0.03 14.4 0.1 0.055 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1357) T2SSE PF00437.20 gi|449067861|ref|YP_007434943.1| - 0.083 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NPV_P10 PF05531.12 gi|449067862|ref|YP_007434944.1| - 0.2 12.1 0.1 0.35 11.4 0.1 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Csc2 PF18320.1 gi|449067863|ref|YP_007434945.1| - 7.4e-17 61.3 0.0 9.6e-17 60.9 0.0 1.2 1 0 0 1 1 1 1 Csc2 Crispr MetOD2 PF18548.1 gi|449067864|ref|YP_007434946.1| - 1.5 9.0 4.1 4.9 7.3 0.1 3.8 3 1 0 3 3 3 0 Metanogen output domain 2 Syntaxin-6_N PF09177.11 gi|449067865|ref|YP_007434947.1| - 0.014 15.9 0.3 0.035 14.6 0.1 1.8 2 0 0 2 2 2 0 Syntaxin 6, N-terminal HTH_38 PF13936.6 gi|449067865|ref|YP_007434947.1| - 0.017 14.9 0.1 0.031 14.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DASH_Dad2 PF08654.10 gi|449067865|ref|YP_007434947.1| - 0.052 14.0 0.7 0.15 12.5 0.7 1.7 1 0 0 1 1 1 0 DASH complex subunit Dad2 HTH_5 PF01022.20 gi|449067865|ref|YP_007434947.1| - 0.076 12.9 0.4 0.16 11.9 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_1 PF00126.27 gi|449067865|ref|YP_007434947.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family CRISPR_Cas6 PF10040.9 gi|449067866|ref|YP_007434948.1| - 4.5e-12 46.4 0.1 1.4e-11 44.9 0.1 1.8 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|449067866|ref|YP_007434948.1| - 0.00029 21.1 2.6 0.0027 18.0 0.7 2.7 2 1 0 2 2 2 1 Cas6 N-terminal domain CRISPR_Cas2 PF09827.9 gi|449067867|ref|YP_007434949.1| - 5.2e-15 55.4 0.2 6.9e-15 55.0 0.2 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PDDEXK_1 PF12705.7 gi|449067868|ref|YP_007434950.1| - 0.0076 16.2 0.3 0.016 15.1 0.1 1.5 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 gi|449067869|ref|YP_007434951.1| - 3.1e-41 141.4 0.0 3.8e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CcdA PF07362.12 gi|449067871|ref|YP_007434953.1| - 9.8e-05 22.7 4.5 0.00035 21.0 4.0 1.8 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA PPDK_N PF01326.19 gi|449067871|ref|YP_007434953.1| - 0.023 14.0 0.6 0.024 13.9 0.6 1.0 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Mrr_N PF14338.6 gi|449067871|ref|YP_007434953.1| - 0.025 14.7 0.9 0.034 14.3 0.5 1.5 1 1 1 2 2 2 0 Mrr N-terminal domain PSK_trans_fac PF07704.11 gi|449067871|ref|YP_007434953.1| - 0.039 14.7 5.8 0.047 14.4 5.8 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor YtxH PF12732.7 gi|449067871|ref|YP_007434953.1| - 0.048 14.2 1.3 0.057 13.9 1.3 1.1 1 0 0 1 1 1 0 YtxH-like protein NAD_binding_4 PF07993.12 gi|449067871|ref|YP_007434953.1| - 0.053 12.7 0.8 0.061 12.5 0.8 1.0 1 0 0 1 1 1 0 Male sterility protein DUF4449 PF14613.6 gi|449067871|ref|YP_007434953.1| - 0.31 11.1 3.8 0.27 11.3 2.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4449) PIN PF01850.21 gi|449067872|ref|YP_007434954.1| - 9.3e-05 22.9 0.1 0.00012 22.6 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF1177 PF06675.11 gi|449067873|ref|YP_007434955.1| - 7.6e-105 349.6 0.0 9e-105 349.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1177) Oscp1 PF10188.9 gi|449067873|ref|YP_007434955.1| - 0.16 12.1 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Organic solute transport protein 1 FAD_binding_4 PF01565.23 gi|449067874|ref|YP_007434956.1| - 9e-27 93.5 0.0 1.6e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|449067874|ref|YP_007434956.1| - 5e-07 29.6 0.1 3.5e-06 26.8 0.1 2.1 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain HlyE PF06109.13 gi|449067874|ref|YP_007434956.1| - 0.037 13.3 0.2 0.053 12.8 0.2 1.1 1 0 0 1 1 1 0 Haemolysin E (HlyE) AAA_15 PF13175.6 gi|449067877|ref|YP_007434959.1| - 8.8e-17 61.9 8.5 1.7e-08 34.6 0.8 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|449067877|ref|YP_007434959.1| - 5.1e-12 46.2 2.3 2.4e-08 34.2 0.2 2.3 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|449067877|ref|YP_007434959.1| - 0.0011 19.5 0.4 0.0011 19.5 0.4 1.8 2 1 0 2 2 2 1 AAA domain Eryth_link_C PF16915.5 gi|449067877|ref|YP_007434959.1| - 0.034 14.1 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Annelid erythrocruorin linker subunit C-terminus DUF327 PF03885.13 gi|449067878|ref|YP_007434960.1| - 0.04 13.9 3.5 0.048 13.6 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF327) DUF3216 PF11505.8 gi|449067878|ref|YP_007434960.1| - 0.041 14.1 0.5 0.098 12.9 0.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3216) DUF2461 PF09365.10 gi|449067878|ref|YP_007434960.1| - 0.066 13.2 0.2 0.079 12.9 0.2 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) AAA_14 PF13173.6 gi|449067879|ref|YP_007434961.1| - 1.4e-12 47.8 0.0 2.1e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain NUMOD1 PF07453.13 gi|449067879|ref|YP_007434961.1| - 0.005 17.0 0.1 0.011 16.0 0.1 1.6 1 0 0 1 1 1 1 NUMOD1 domain HTH_24 PF13412.6 gi|449067879|ref|YP_007434961.1| - 0.0092 15.5 0.0 0.025 14.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|449067879|ref|YP_007434961.1| - 0.034 13.9 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.12 gi|449067879|ref|YP_007434961.1| - 0.047 13.6 0.0 0.093 12.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF2089 PF09862.9 gi|449067879|ref|YP_007434961.1| - 0.048 13.7 0.0 0.68 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) HTH_Mga PF08280.11 gi|449067879|ref|YP_007434961.1| - 0.094 12.8 0.0 0.31 11.1 0.0 1.9 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 gi|449067879|ref|YP_007434961.1| - 0.11 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_17 PF12728.7 gi|449067879|ref|YP_007434961.1| - 0.14 12.3 0.0 2.4 8.4 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.21 gi|449067879|ref|YP_007434961.1| - 0.16 11.6 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Hemopexin PF00045.19 gi|449067880|ref|YP_007434962.1| - 0.0057 16.6 1.3 0.077 13.0 0.7 2.1 2 0 0 2 2 2 2 Hemopexin NTP_transf_2 PF01909.23 gi|449067881|ref|YP_007434963.1| - 0.0016 18.7 0.0 0.0022 18.3 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|449067881|ref|YP_007434963.1| - 0.057 13.5 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase RAMPs PF03787.15 gi|449067883|ref|YP_007434965.1| - 7.3e-23 81.7 0.3 1.2e-22 81.0 0.3 1.4 1 0 0 1 1 1 1 RAMP superfamily Asp_protease_2 PF13650.6 gi|449067884|ref|YP_007434966.1| - 0.078 13.6 0.0 0.18 12.5 0.0 1.6 1 1 1 2 2 2 0 Aspartyl protease RAMPs PF03787.15 gi|449067885|ref|YP_007434967.1| - 2.4e-10 40.8 0.4 4.7e-10 39.9 0.4 1.4 1 1 0 1 1 1 1 RAMP superfamily eIF-5_eIF-2B PF01873.17 gi|449067885|ref|YP_007434967.1| - 0.072 13.0 0.1 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 Domain found in IF2B/IF5 Tachystatin_B PF11478.8 gi|449067886|ref|YP_007434968.1| - 0.1 12.5 0.4 0.2 11.6 0.4 1.4 1 0 0 1 1 1 0 Antimicrobial chitin binding protein tachystatin B DUF5314 PF17241.2 gi|449067887|ref|YP_007434969.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5314) DUF1492 PF07374.11 gi|449067888|ref|YP_007434970.1| - 5.3 7.3 6.9 2.1 8.6 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1492) Ubie_methyltran PF01209.18 gi|449067889|ref|YP_007434971.1| - 1.5e-22 80.1 0.6 2.2e-22 79.6 0.6 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|449067889|ref|YP_007434971.1| - 1.9e-15 57.3 0.1 3e-15 56.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|449067889|ref|YP_007434971.1| - 1.5e-13 51.3 0.1 3.3e-13 50.1 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|449067889|ref|YP_007434971.1| - 1.3e-07 31.4 0.0 2.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|449067889|ref|YP_007434971.1| - 1.5e-07 32.1 0.0 2.8e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|449067889|ref|YP_007434971.1| - 1.9e-07 31.0 0.1 1.3e-06 28.3 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|449067889|ref|YP_007434971.1| - 2.5e-06 27.4 0.0 3.4e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_7 PF03492.15 gi|449067889|ref|YP_007434971.1| - 0.0017 17.6 0.0 0.0029 16.9 0.0 1.5 1 0 0 1 1 1 1 SAM dependent carboxyl methyltransferase MTS PF05175.14 gi|449067889|ref|YP_007434971.1| - 0.0052 16.3 0.0 0.0096 15.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|449067889|ref|YP_007434971.1| - 0.025 14.3 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|449067889|ref|YP_007434971.1| - 0.051 13.6 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TRM13 PF05206.14 gi|449067889|ref|YP_007434971.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase TRM13 Myelin_PLP PF01275.19 gi|449067890|ref|YP_007434972.1| - 0.004 17.0 0.4 0.28 11.0 0.0 2.1 2 0 0 2 2 2 2 Myelin proteolipid protein (PLP or lipophilin) TrmO PF01980.16 gi|449067891|ref|YP_007434973.1| - 5.6e-32 110.5 0.0 6.6e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-methyltransferase O MFS_1 PF07690.16 gi|449067892|ref|YP_007434974.1| - 9.3e-17 61.0 61.1 9.3e-17 61.0 61.1 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067892|ref|YP_007434974.1| - 7.9e-12 44.8 18.2 7.9e-12 44.8 18.2 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter DUF5010_C PF18099.1 gi|449067894|ref|YP_007434976.1| - 0.037 14.1 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 DUF5010 C-terminal domain Glycos_transf_1 PF00534.20 gi|449067896|ref|YP_007434978.1| - 5.7e-37 126.9 0.1 1.7e-35 122.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067896|ref|YP_007434978.1| - 7.9e-25 87.8 0.0 1.5e-24 87.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|449067896|ref|YP_007434978.1| - 6e-20 71.9 1.1 1.1e-19 71.1 1.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|449067896|ref|YP_007434978.1| - 8.3e-06 26.1 0.0 3.8e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|449067896|ref|YP_007434978.1| - 4.7e-05 23.9 0.0 0.00046 20.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_5 PF16994.5 gi|449067896|ref|YP_007434978.1| - 0.045 13.4 0.4 0.091 12.4 0.4 1.6 1 0 0 1 1 1 0 Glycosyl-transferase family 4 Glycos_transf_2 PF00535.26 gi|449067898|ref|YP_007434980.1| - 4.6e-20 72.1 0.1 6.5e-20 71.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|449067898|ref|YP_007434980.1| - 5e-07 29.5 0.0 7.7e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|449067898|ref|YP_007434980.1| - 0.0008 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|449067898|ref|YP_007434980.1| - 0.012 16.1 0.0 0.023 15.2 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|449067900|ref|YP_007434982.1| - 9.9e-06 25.5 0.2 1.5e-05 24.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4325 PF14213.6 gi|449067900|ref|YP_007434982.1| - 0.046 13.4 0.2 0.24 11.1 0.1 2.3 2 0 0 2 2 2 0 STAS-like domain of unknown function (DUF4325) Glycos_transf_1 PF00534.20 gi|449067903|ref|YP_007434985.1| - 2.8e-14 53.0 0.1 7.4e-14 51.6 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067903|ref|YP_007434985.1| - 7.1e-11 42.7 0.0 1.5e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|449067903|ref|YP_007434985.1| - 0.0015 18.6 0.0 0.0039 17.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|449067903|ref|YP_007434985.1| - 0.017 15.1 0.0 0.058 13.4 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|449067904|ref|YP_007434986.1| - 5e-13 49.2 0.2 8.9e-13 48.4 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|449067904|ref|YP_007434986.1| - 2.6e-09 37.3 0.0 4.2e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|449067905|ref|YP_007434987.1| - 1.9e-21 76.3 0.0 4e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067905|ref|YP_007434987.1| - 1.2e-13 51.6 0.0 1.9e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|449067907|ref|YP_007434989.1| - 4.2e-10 39.9 0.3 3.9e-05 23.7 0.3 2.2 1 1 1 2 2 2 2 Methyltransferase FkbM domain Met_10 PF02475.16 gi|449067907|ref|YP_007434989.1| - 1.7e-06 28.0 0.1 3e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|449067907|ref|YP_007434989.1| - 3.4e-05 23.4 0.1 5e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|449067907|ref|YP_007434989.1| - 0.022 14.6 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|449067907|ref|YP_007434989.1| - 0.047 13.3 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F HMA PF00403.26 gi|449067907|ref|YP_007434989.1| - 0.11 13.0 4.8 0.15 12.6 0.2 3.2 3 2 1 4 4 4 0 Heavy-metal-associated domain Cons_hypoth95 PF03602.15 gi|449067907|ref|YP_007434989.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|449067907|ref|YP_007434989.1| - 0.12 13.1 0.0 0.27 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|449067907|ref|YP_007434989.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF2079 PF09852.9 gi|449067908|ref|YP_007434990.1| - 2.4e-100 336.6 39.6 3e-100 336.3 39.6 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) DUF3671 PF12420.8 gi|449067908|ref|YP_007434990.1| - 3.2 7.9 10.5 1.3 9.1 4.7 3.2 1 1 1 2 2 2 0 Protein of unknown function Wzz PF02706.15 gi|449067908|ref|YP_007434990.1| - 4.4 7.7 8.1 1.2 9.5 0.2 3.4 4 0 0 4 4 4 0 Chain length determinant protein DUF2079 PF09852.9 gi|449067909|ref|YP_007434991.1| - 2e-102 343.4 41.5 2.5e-102 343.1 41.5 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) Glycos_transf_1 PF00534.20 gi|449067912|ref|YP_007434994.1| - 2.5e-20 72.7 0.3 4.7e-20 71.8 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067912|ref|YP_007434994.1| - 2e-15 57.4 0.0 3.8e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|449067912|ref|YP_007434994.1| - 2.9e-11 43.6 0.0 6.3e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|449067912|ref|YP_007434994.1| - 6.4e-05 23.0 0.0 0.00057 19.9 0.0 2.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Clathrin-link PF09268.10 gi|449067912|ref|YP_007434994.1| - 0.028 13.8 0.8 0.54 9.7 0.2 2.8 3 0 0 3 3 3 0 Clathrin, heavy-chain linker Glyco_trans_4_4 PF13579.6 gi|449067912|ref|YP_007434994.1| - 0.083 13.3 0.0 0.17 12.3 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|449067913|ref|YP_007434995.1| - 5e-18 65.2 1.2 8.4e-18 64.5 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067913|ref|YP_007434995.1| - 2.1e-11 44.4 0.0 3.6e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|449067914|ref|YP_007434996.1| - 1e-17 64.2 0.0 2.1e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|449067914|ref|YP_007434996.1| - 1.9e-07 31.6 0.0 4.1e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphodiest PF01663.22 gi|449067919|ref|YP_007435001.1| - 0.00018 21.2 0.1 0.00019 21.1 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|449067919|ref|YP_007435001.1| - 0.00026 20.5 0.0 0.00026 20.5 0.0 1.0 1 0 0 1 1 1 1 Sulfatase PAPS_reduct PF01507.19 gi|449067920|ref|YP_007435002.1| - 2.8e-21 76.3 0.0 4.9e-21 75.5 0.0 1.4 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Thioredoxin_6 PF13848.6 gi|449067921|ref|YP_007435003.1| - 0.00044 20.2 1.0 0.69 9.8 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin-like domain E3_UbLigase_EDD PF11547.8 gi|449067921|ref|YP_007435003.1| - 0.00088 18.9 0.5 1.3 8.8 0.1 2.4 2 0 0 2 2 2 2 E3 ubiquitin ligase EDD RexA PF15969.5 gi|449067921|ref|YP_007435003.1| - 0.0024 17.5 0.6 1.6 8.2 0.0 2.2 1 1 0 2 2 2 2 Intracellular sensor of Lambda phage, Abi component EF-G-binding_N PF07299.11 gi|449067921|ref|YP_007435003.1| - 0.13 12.8 0.7 0.94 10.0 0.1 2.1 1 1 1 2 2 2 0 Elongation factor G-binding protein, N-terminal HEPN PF05168.14 gi|449067922|ref|YP_007435004.1| - 3.4e-09 36.9 0.2 3.9e-09 36.7 0.2 1.0 1 0 0 1 1 1 1 HEPN domain AAA_14 PF13173.6 gi|449067924|ref|YP_007435006.1| - 1e-29 103.2 1.2 1.6e-29 102.6 0.2 1.9 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|449067924|ref|YP_007435006.1| - 1.1e-08 35.2 0.3 3.6e-08 33.6 0.3 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) T2SSE PF00437.20 gi|449067924|ref|YP_007435006.1| - 0.021 13.9 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Mrr_cat PF04471.12 gi|449067924|ref|YP_007435006.1| - 0.034 14.2 0.0 0.071 13.1 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease ATPase_2 PF01637.18 gi|449067924|ref|YP_007435006.1| - 0.051 13.5 4.7 0.44 10.4 0.1 3.4 1 1 3 4 4 4 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|449067924|ref|YP_007435006.1| - 0.087 13.1 0.3 0.2 11.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain KHA PF11834.8 gi|449067924|ref|YP_007435006.1| - 0.089 12.9 0.0 0.78 9.9 0.0 2.4 2 0 0 2 2 2 0 KHA, dimerisation domain of potassium ion channel RTP1_C1 PF10363.9 gi|449067924|ref|YP_007435006.1| - 0.16 12.2 0.1 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 VAPB_antitox PF02697.14 gi|449067928|ref|YP_007435010.1| - 4e-07 30.7 0.9 4.4e-07 30.6 0.9 1.0 1 0 0 1 1 1 1 Putative antitoxin DUF4282 PF14110.6 gi|449067929|ref|YP_007435011.1| - 0.081 13.7 0.3 0.11 13.2 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Phi-29_GP4 PF05464.11 gi|449067931|ref|YP_007435013.1| - 0.069 13.4 0.0 0.07 13.4 0.0 1.1 1 0 0 1 1 1 0 Phi-29-like late genes activator (early protein GP4) Pyr_redox_2 PF07992.14 gi|449067932|ref|YP_007435014.1| - 2.2e-39 135.4 0.7 2.7e-39 135.1 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449067932|ref|YP_007435014.1| - 3e-13 50.1 4.2 2.7e-12 47.1 1.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449067932|ref|YP_007435014.1| - 1.5e-05 24.4 0.2 2e-05 24.0 0.1 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|449067932|ref|YP_007435014.1| - 0.00026 20.7 0.9 0.15 11.6 0.2 3.3 3 1 1 4 4 4 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|449067932|ref|YP_007435014.1| - 0.0011 18.1 0.0 0.0024 17.1 0.0 1.5 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) HycI PF01750.18 gi|449067932|ref|YP_007435014.1| - 0.018 14.8 0.2 6.7 6.5 0.1 2.5 2 0 0 2 2 2 0 Hydrogenase maturation protease NAD_binding_9 PF13454.6 gi|449067932|ref|YP_007435014.1| - 0.11 12.5 0.2 15 5.6 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|449067932|ref|YP_007435014.1| - 0.22 10.2 2.6 2.8 6.6 0.4 3.1 3 1 0 3 3 3 0 HI0933-like protein TPP_enzyme_N PF02776.18 gi|449067933|ref|YP_007435015.1| - 6.6e-48 162.6 0.1 1.4e-45 154.9 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449067933|ref|YP_007435015.1| - 1.7e-40 138.3 1.5 4.7e-40 136.9 0.1 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|449067933|ref|YP_007435015.1| - 3.7e-29 101.2 0.0 5.9e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|449067933|ref|YP_007435015.1| - 0.0021 17.8 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Methyltrn_RNA_4 PF09936.9 gi|449067933|ref|YP_007435015.1| - 0.078 12.8 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase VAPB_antitox PF02697.14 gi|449067934|ref|YP_007435016.1| - 0.0059 17.4 0.4 0.02 15.6 0.4 2.0 1 1 0 1 1 1 1 Putative antitoxin DUF2225 PF09986.9 gi|449067934|ref|YP_007435016.1| - 0.12 12.1 0.1 0.14 11.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) PIN PF01850.21 gi|449067935|ref|YP_007435017.1| - 2.6e-10 40.9 0.0 3.1e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain Aldedh PF00171.22 gi|449067936|ref|YP_007435018.1| - 2.6e-162 540.5 0.0 3e-162 540.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|449067936|ref|YP_007435018.1| - 0.011 14.8 0.0 0.064 12.3 0.0 2.1 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) FAA_hydrolase PF01557.18 gi|449067937|ref|YP_007435019.1| - 6.5e-26 91.4 0.0 3.5e-25 89.0 0.0 1.9 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Abhydrolase_1 PF00561.20 gi|449067938|ref|YP_007435020.1| - 0.00096 18.9 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|449067938|ref|YP_007435020.1| - 0.06 12.6 0.0 0.088 12.1 0.0 1.4 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|449067938|ref|YP_007435020.1| - 0.13 12.3 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein DUF3726 PF12525.8 gi|449067938|ref|YP_007435020.1| - 0.18 11.9 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3726) OrfB_Zn_ribbon PF07282.11 gi|449067939|ref|YP_007435021.1| - 3.4e-18 65.3 0.0 5.7e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF3427 PF11907.8 gi|449067939|ref|YP_007435021.1| - 0.069 12.4 1.2 0.6 9.3 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3427) DUF3945 PF13101.6 gi|449067939|ref|YP_007435021.1| - 0.13 12.0 0.1 25 4.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) Abhydrolase_1 PF00561.20 gi|449067940|ref|YP_007435022.1| - 1.6e-18 67.3 0.0 1.8e-18 67.1 0.0 1.0 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|449067940|ref|YP_007435022.1| - 3.9e-14 52.5 0.0 4.5e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|449067940|ref|YP_007435022.1| - 2.8e-12 47.7 0.0 3.2e-12 47.5 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|449067940|ref|YP_007435022.1| - 0.00023 21.4 0.0 0.00028 21.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase domain Esterase PF00756.20 gi|449067940|ref|YP_007435022.1| - 0.00094 18.9 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Lipase_3 PF01764.25 gi|449067940|ref|YP_007435022.1| - 0.0013 18.6 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Lipase (class 3) Peptidase_S9 PF00326.21 gi|449067940|ref|YP_007435022.1| - 0.0027 17.2 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family PGAP1 PF07819.13 gi|449067940|ref|YP_007435022.1| - 0.0044 16.8 0.1 0.0079 15.9 0.1 1.5 1 1 0 1 1 1 1 PGAP1-like protein DUF1057 PF06342.12 gi|449067940|ref|YP_007435022.1| - 0.0047 16.0 0.1 0.0077 15.3 0.1 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) Abhydrolase_2 PF02230.16 gi|449067940|ref|YP_007435022.1| - 0.005 16.7 0.0 0.0078 16.0 0.0 1.3 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.13 gi|449067940|ref|YP_007435022.1| - 0.0065 16.3 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF915 PF06028.11 gi|449067940|ref|YP_007435022.1| - 0.014 14.7 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) DLH PF01738.18 gi|449067940|ref|YP_007435022.1| - 0.035 13.7 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family PAF-AH_p_II PF03403.13 gi|449067940|ref|YP_007435022.1| - 0.037 12.6 0.0 0.11 11.0 0.0 1.7 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II RXLR_WY PF18634.1 gi|449067940|ref|YP_007435022.1| - 0.043 13.7 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 RXLR phytopathogen effector protein WY-domain LIDHydrolase PF10230.9 gi|449067940|ref|YP_007435022.1| - 0.049 13.2 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase Peptidase_S15 PF02129.18 gi|449067940|ref|YP_007435022.1| - 0.067 12.8 0.0 0.081 12.5 0.0 1.3 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) DUF1749 PF08538.10 gi|449067940|ref|YP_007435022.1| - 0.11 11.6 0.1 0.16 11.0 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1749) DUF676 PF05057.14 gi|449067940|ref|YP_007435022.1| - 0.11 12.0 0.0 0.12 11.8 0.0 1.2 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Chlorophyllase PF07224.11 gi|449067940|ref|YP_007435022.1| - 0.16 10.9 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase BAAT_C PF08840.11 gi|449067940|ref|YP_007435022.1| - 0.18 11.7 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2974 PF11187.8 gi|449067940|ref|YP_007435022.1| - 0.2 11.2 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) DUF1043 PF06295.12 gi|449067941|ref|YP_007435023.1| - 4.9e-06 26.6 11.9 2.6e-05 24.2 11.9 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1043) HemX PF04375.14 gi|449067941|ref|YP_007435023.1| - 0.00024 20.5 7.5 0.0003 20.2 7.5 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase MctB PF11382.8 gi|449067941|ref|YP_007435023.1| - 0.00048 19.9 6.0 0.00072 19.4 0.4 2.1 1 1 1 2 2 2 1 Copper transport outer membrane protein, MctB FapA PF03961.13 gi|449067941|ref|YP_007435023.1| - 0.0021 16.7 0.2 0.0027 16.4 0.2 1.1 1 0 0 1 1 1 1 Flagellar Assembly Protein A Halogen_Hydrol PF10112.9 gi|449067941|ref|YP_007435023.1| - 0.0026 17.8 0.0 0.0038 17.3 0.0 1.2 1 0 0 1 1 1 1 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4407 PF14362.6 gi|449067941|ref|YP_007435023.1| - 0.0026 17.1 6.1 0.0044 16.4 6.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) DUF812 PF05667.11 gi|449067941|ref|YP_007435023.1| - 0.0029 16.6 5.7 0.0035 16.3 5.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF812) OmpH PF03938.14 gi|449067941|ref|YP_007435023.1| - 0.003 17.9 16.0 0.0042 17.4 16.0 1.2 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) DUF1980 PF09323.10 gi|449067941|ref|YP_007435023.1| - 0.0066 16.4 1.6 0.0066 16.4 1.6 1.5 2 0 0 2 2 1 1 Domain of unknown function (DUF1980) Phage_GP20 PF06810.11 gi|449067941|ref|YP_007435023.1| - 0.0076 16.1 4.2 0.01 15.6 4.2 1.1 1 0 0 1 1 1 1 Phage minor structural protein GP20 HAUS6_N PF14661.6 gi|449067941|ref|YP_007435023.1| - 0.0081 15.8 0.6 0.0095 15.5 0.6 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 6 N-terminus Exonuc_VII_L PF02601.15 gi|449067941|ref|YP_007435023.1| - 0.014 15.0 2.6 0.016 14.8 2.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Sec34 PF04136.15 gi|449067941|ref|YP_007435023.1| - 0.027 14.4 9.0 0.039 13.8 9.0 1.2 1 0 0 1 1 1 0 Sec34-like family GAS PF13851.6 gi|449067941|ref|YP_007435023.1| - 0.027 13.8 9.9 0.04 13.3 9.9 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding PAD_porph PF04371.15 gi|449067941|ref|YP_007435023.1| - 0.035 13.4 0.7 0.071 12.4 0.2 1.6 1 1 1 2 2 2 0 Porphyromonas-type peptidyl-arginine deiminase Tropomyosin_1 PF12718.7 gi|449067941|ref|YP_007435023.1| - 0.043 14.0 4.7 0.06 13.5 4.7 1.1 1 0 0 1 1 1 0 Tropomyosin like Uso1_p115_C PF04871.13 gi|449067941|ref|YP_007435023.1| - 0.053 13.9 7.4 0.076 13.4 7.4 1.1 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Jnk-SapK_ap_N PF09744.9 gi|449067941|ref|YP_007435023.1| - 0.067 13.4 8.5 0.093 13.0 8.5 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 CENP-F_leu_zip PF10473.9 gi|449067941|ref|YP_007435023.1| - 0.088 12.8 4.5 0.12 12.4 4.5 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SurA_N_3 PF13624.6 gi|449067941|ref|YP_007435023.1| - 0.09 12.6 11.3 0.23 11.2 11.3 1.6 1 1 0 1 1 1 0 SurA N-terminal domain Cep57_CLD PF14073.6 gi|449067941|ref|YP_007435023.1| - 0.1 12.6 8.7 0.15 12.1 8.7 1.2 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 DUF745 PF05335.13 gi|449067941|ref|YP_007435023.1| - 0.13 11.9 8.6 0.18 11.5 8.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF3450 PF11932.8 gi|449067941|ref|YP_007435023.1| - 0.14 11.4 12.7 0.21 10.8 12.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) ADIP PF11559.8 gi|449067941|ref|YP_007435023.1| - 0.14 12.2 9.9 0.21 11.6 9.9 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4763 PF15960.5 gi|449067941|ref|YP_007435023.1| - 0.17 11.2 10.3 0.27 10.5 10.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) FlxA PF14282.6 gi|449067941|ref|YP_007435023.1| - 0.17 11.9 20.0 0.3 11.1 20.0 1.4 1 0 0 1 1 1 0 FlxA-like protein GrpE PF01025.19 gi|449067941|ref|YP_007435023.1| - 0.2 11.3 4.5 0.3 10.7 4.5 1.2 1 0 0 1 1 1 0 GrpE XPG_I_2 PF12813.7 gi|449067941|ref|YP_007435023.1| - 0.23 10.9 3.8 0.29 10.6 3.8 1.1 1 0 0 1 1 1 0 XPG domain containing LapA_dom PF06305.11 gi|449067941|ref|YP_007435023.1| - 0.24 11.3 3.0 1.1 9.1 3.0 2.1 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain FPP PF05911.11 gi|449067941|ref|YP_007435023.1| - 0.39 8.9 5.8 0.48 8.6 5.8 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil DUF5320 PF17253.2 gi|449067941|ref|YP_007435023.1| - 0.42 11.7 7.7 1.9 9.6 0.5 2.4 1 1 1 2 2 2 0 Family of unknown function (DUF5320) IFT57 PF10498.9 gi|449067941|ref|YP_007435023.1| - 0.47 9.4 14.9 0.64 8.9 14.9 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF2959 PF11172.8 gi|449067941|ref|YP_007435023.1| - 1.4 9.0 9.9 6.2 6.9 1.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Spc24 PF08286.11 gi|449067941|ref|YP_007435023.1| - 1.6 9.0 10.1 2.8 8.2 10.1 1.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF4834 PF16118.5 gi|449067941|ref|YP_007435023.1| - 2.1 9.4 8.8 9.5 7.3 8.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) M PF02370.16 gi|449067941|ref|YP_007435023.1| - 3.4 8.5 14.0 11 6.9 3.2 2.5 2 0 0 2 2 2 0 M protein repeat DivIVA PF05103.13 gi|449067941|ref|YP_007435023.1| - 3.9 7.6 13.2 3.1 7.9 5.5 2.1 1 1 1 2 2 2 0 DivIVA protein MapZ_EC1 PF18041.1 gi|449067941|ref|YP_007435023.1| - 4 7.7 17.2 7.1 6.9 4.6 2.3 1 1 1 2 2 2 0 MapZ extracellular domain 1 DUF2681 PF10883.8 gi|449067941|ref|YP_007435023.1| - 4.2 7.8 16.1 2.6 8.5 3.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2681) Prefoldin_2 PF01920.20 gi|449067941|ref|YP_007435023.1| - 5.2 7.1 22.4 2.1 8.3 7.1 2.1 1 1 1 2 2 2 0 Prefoldin subunit YlqD PF11068.8 gi|449067941|ref|YP_007435023.1| - 5.9 7.3 15.0 8.9 6.7 15.0 1.2 1 0 0 1 1 1 0 YlqD protein Cep57_MT_bd PF06657.13 gi|449067941|ref|YP_007435023.1| - 6.2 7.3 12.0 16 6.0 3.5 2.2 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Sugar_tr PF00083.24 gi|449067942|ref|YP_007435024.1| - 1e-83 281.7 25.8 1.7e-83 281.0 25.8 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067942|ref|YP_007435024.1| - 2.3e-22 79.4 35.4 2.3e-22 79.4 35.4 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily NADH-u_ox-rdase PF10785.9 gi|449067942|ref|YP_007435024.1| - 1.7 9.4 4.2 2.9 8.6 0.0 3.3 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Gpr1_Fun34_YaaH PF01184.19 gi|449067943|ref|YP_007435025.1| - 5.9e-43 146.9 28.4 8.3e-43 146.4 28.4 1.2 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family PIN PF01850.21 gi|449067944|ref|YP_007435026.1| - 3.3e-07 30.8 0.4 4.4e-07 30.4 0.4 1.2 1 0 0 1 1 1 1 PIN domain NTS PF15447.6 gi|449067945|ref|YP_007435027.1| - 0.36 11.4 2.8 1.1 9.8 0.1 2.3 2 0 0 2 2 2 0 N-terminal segments of PfEMP1 DUF4790 PF16037.5 gi|449067946|ref|YP_007435028.1| - 0.026 15.0 0.8 0.032 14.7 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4790) Sugar_tr PF00083.24 gi|449067948|ref|YP_007435030.1| - 4.6e-15 55.4 11.8 4.6e-15 55.4 11.8 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|449067948|ref|YP_007435030.1| - 4.5e-14 52.1 42.5 4.5e-14 52.1 42.5 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily Methylase_S PF01420.19 gi|449067948|ref|YP_007435030.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Type I restriction modification DNA specificity domain PaREP1 PF05942.11 gi|449067949|ref|YP_007435031.1| - 2.8e-25 88.5 0.0 4.3e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF29 PF01724.16 gi|449067949|ref|YP_007435031.1| - 0.001 19.3 0.1 0.0023 18.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF29 ARL2_Bind_BART PF11527.8 gi|449067949|ref|YP_007435031.1| - 0.071 13.2 0.5 0.21 11.7 0.3 1.8 2 0 0 2 2 2 0 The ARF-like 2 binding protein BART Microcin PF03526.13 gi|449067950|ref|YP_007435032.1| - 0.1 12.4 0.9 0.25 11.2 0.9 1.6 1 0 0 1 1 1 0 Colicin E1 (microcin) immunity protein RHH_1 PF01402.21 gi|449067951|ref|YP_007435033.1| - 0.011 15.6 0.3 0.094 12.7 0.0 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF5388 PF17363.2 gi|449067951|ref|YP_007435033.1| - 0.014 15.6 0.1 0.031 14.5 0.1 1.6 1 1 1 2 2 2 0 Family of unknown function (DUF5388) TerB_N PF13208.6 gi|449067951|ref|YP_007435033.1| - 0.054 13.2 0.1 0.065 12.9 0.1 1.1 1 0 0 1 1 1 0 TerB N-terminal domain ATG16 PF08614.11 gi|449067951|ref|YP_007435033.1| - 0.057 13.6 0.9 0.069 13.4 0.9 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) PIN PF01850.21 gi|449067952|ref|YP_007435034.1| - 2.4e-18 66.8 1.8 2.8e-18 66.6 1.8 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|449067952|ref|YP_007435034.1| - 0.00015 22.3 0.9 0.00017 22.1 0.9 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|449067952|ref|YP_007435034.1| - 0.0024 18.6 0.3 0.003 18.3 0.3 1.2 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|449067953|ref|YP_007435035.1| - 2.1e-18 67.0 1.5 2.4e-18 66.8 1.5 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|449067953|ref|YP_007435035.1| - 0.00031 21.0 0.1 0.0041 17.4 0.1 2.0 1 1 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|449067953|ref|YP_007435035.1| - 0.0049 17.1 0.5 0.011 16.1 0.5 1.8 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|449067953|ref|YP_007435035.1| - 0.065 13.7 0.6 0.11 13.0 0.6 1.5 1 1 0 1 1 1 0 PIN domain DUF5615 PF18480.1 gi|449067953|ref|YP_007435035.1| - 0.096 12.4 0.0 2.2 8.1 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF5615) MazE_antitoxin PF04014.18 gi|449067954|ref|YP_007435036.1| - 8.7e-15 54.3 0.3 1.2e-14 53.8 0.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|449067954|ref|YP_007435036.1| - 1.6e-06 28.4 0.1 1.8e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF3006 PF11213.8 gi|449067954|ref|YP_007435036.1| - 0.017 15.4 0.0 0.024 14.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) MarR PF01047.22 gi|449067955|ref|YP_007435037.1| - 2.1e-10 40.4 0.4 9.3e-10 38.3 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|449067955|ref|YP_007435037.1| - 9.5e-10 38.2 0.1 2e-09 37.2 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|449067955|ref|YP_007435037.1| - 5e-09 36.5 0.1 1.2e-08 35.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|449067955|ref|YP_007435037.1| - 7.1e-06 25.5 0.1 4.1e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|449067955|ref|YP_007435037.1| - 0.00013 22.1 0.0 0.00027 21.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|449067955|ref|YP_007435037.1| - 0.00014 22.0 0.0 0.00031 20.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|449067955|ref|YP_007435037.1| - 0.00029 20.4 1.1 0.0026 17.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|449067955|ref|YP_007435037.1| - 0.0025 17.8 0.1 0.011 15.8 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain PaaX PF07848.12 gi|449067955|ref|YP_007435037.1| - 0.0032 17.7 0.1 0.0055 16.9 0.1 1.4 1 0 0 1 1 1 1 PaaX-like protein DUF3116 PF11313.8 gi|449067955|ref|YP_007435037.1| - 0.0065 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) TrmB PF01978.19 gi|449067955|ref|YP_007435037.1| - 0.0071 16.2 0.7 0.026 14.4 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|449067955|ref|YP_007435037.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix B-block_TFIIIC PF04182.12 gi|449067955|ref|YP_007435037.1| - 0.099 12.8 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_54 PF18607.1 gi|449067955|ref|YP_007435037.1| - 0.11 12.5 0.0 0.36 10.9 0.0 1.7 1 1 1 2 2 2 0 ParA helix turn helix domain MFS_1 PF07690.16 gi|449067956|ref|YP_007435038.1| - 8.3e-42 143.4 52.3 8.3e-42 143.4 52.3 3.4 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449067956|ref|YP_007435038.1| - 3.7e-08 32.7 25.3 1.1e-07 31.1 11.1 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter PUCC PF03209.15 gi|449067956|ref|YP_007435038.1| - 0.00017 20.7 2.4 0.00017 20.7 2.4 2.5 2 0 0 2 2 2 1 PUCC protein MFS_3 PF05977.13 gi|449067956|ref|YP_007435038.1| - 0.0048 15.4 3.6 0.0048 15.4 3.6 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector Spo7 PF03907.13 gi|449067957|ref|YP_007435039.1| - 0.076 12.5 0.8 0.13 11.8 0.8 1.3 1 0 0 1 1 1 0 Spo7-like protein ABC_tran PF00005.27 gi|449067960|ref|YP_007435042.1| - 3e-21 76.4 0.0 6e-21 75.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449067960|ref|YP_007435042.1| - 1.5e-12 48.0 0.0 2.6e-05 24.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449067960|ref|YP_007435042.1| - 9e-10 38.3 0.1 0.00039 19.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|449067960|ref|YP_007435042.1| - 3.7e-05 23.6 0.0 0.0036 17.1 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|449067960|ref|YP_007435042.1| - 0.00013 22.6 0.1 0.00031 21.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|449067960|ref|YP_007435042.1| - 0.00015 21.4 0.0 0.00038 20.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|449067960|ref|YP_007435042.1| - 0.00074 19.9 0.0 0.0013 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|449067960|ref|YP_007435042.1| - 0.0024 17.8 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|449067960|ref|YP_007435042.1| - 0.0029 17.3 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|449067960|ref|YP_007435042.1| - 0.0057 16.6 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 NTPase SRP54 PF00448.22 gi|449067960|ref|YP_007435042.1| - 0.0085 15.7 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|449067960|ref|YP_007435042.1| - 0.016 15.6 0.0 5.8 7.3 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|449067960|ref|YP_007435042.1| - 0.022 13.6 0.2 0.53 9.0 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ATP_bind_1 PF03029.17 gi|449067960|ref|YP_007435042.1| - 0.058 13.2 0.2 6.1 6.5 0.1 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|449067960|ref|YP_007435042.1| - 0.066 13.4 0.1 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|449067960|ref|YP_007435042.1| - 0.089 13.0 0.1 1.2 9.4 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|449067960|ref|YP_007435042.1| - 0.15 11.6 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rieske PF00355.26 gi|449067962|ref|YP_007435044.1| - 5.3e-14 51.9 0.1 5.8e-14 51.8 0.1 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|449067962|ref|YP_007435044.1| - 1.7e-09 37.6 0.0 2e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain adh_short_C2 PF13561.6 gi|449067964|ref|YP_007435046.1| - 1.3e-62 211.4 0.0 1.5e-62 211.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449067964|ref|YP_007435046.1| - 7.6e-54 182.1 0.2 8.8e-54 181.9 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449067964|ref|YP_007435046.1| - 4.8e-14 52.7 0.1 6.5e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 KR domain YdjC PF04794.12 gi|449067964|ref|YP_007435046.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 YdjC-like protein AMP-binding PF00501.28 gi|449067965|ref|YP_007435047.1| - 4.2e-85 285.9 0.0 5.5e-85 285.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449067965|ref|YP_007435047.1| - 1e-20 74.5 0.8 1.9e-20 73.6 0.8 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GH3 PF03321.13 gi|449067965|ref|YP_007435047.1| - 2.8e-05 23.2 0.2 6.7e-05 21.9 0.1 1.6 2 0 0 2 2 2 1 GH3 auxin-responsive promoter MR_MLE_C PF13378.6 gi|449067966|ref|YP_007435048.1| - 4.6e-60 202.9 0.0 6.1e-60 202.5 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|449067966|ref|YP_007435048.1| - 2.3e-16 60.1 0.0 4e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Thiolase_C PF02803.18 gi|449067967|ref|YP_007435049.1| - 7e-05 22.5 0.2 0.00025 20.7 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain DUF35_N PF12172.8 gi|449067968|ref|YP_007435050.1| - 8.6e-11 41.5 2.1 1.2e-10 41.1 2.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|449067968|ref|YP_007435050.1| - 1.2e-05 25.2 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated HypA PF01155.19 gi|449067968|ref|YP_007435050.1| - 0.00047 20.2 0.1 0.00061 19.8 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|449067968|ref|YP_007435050.1| - 0.001 18.8 0.2 0.0011 18.6 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc_ribbon_13 PF09855.9 gi|449067968|ref|YP_007435050.1| - 0.0022 18.1 2.1 0.11 12.6 0.0 2.5 2 1 0 2 2 2 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_15 PF17032.5 gi|449067968|ref|YP_007435050.1| - 0.015 16.0 1.9 0.024 15.4 1.9 1.3 1 0 0 1 1 1 0 zinc-ribbon family FdhE PF04216.12 gi|449067968|ref|YP_007435050.1| - 0.017 15.1 0.9 0.021 14.7 0.9 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-TFIIB PF13453.6 gi|449067968|ref|YP_007435050.1| - 0.021 14.1 0.3 0.47 9.8 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.6 gi|449067968|ref|YP_007435050.1| - 0.022 14.7 2.3 0.19 11.7 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|449067968|ref|YP_007435050.1| - 0.079 12.8 2.8 2.9 7.8 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2387 PF09526.10 gi|449067968|ref|YP_007435050.1| - 0.32 11.2 2.2 0.94 9.7 0.0 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.12 gi|449067968|ref|YP_007435050.1| - 0.42 10.2 3.1 3.4 7.3 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|449067968|ref|YP_007435050.1| - 1.1 9.1 5.8 12 5.7 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain MazE_antitoxin PF04014.18 gi|449067969|ref|YP_007435051.1| - 9.6e-15 54.1 0.4 1.5e-14 53.5 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|449067969|ref|YP_007435051.1| - 1.3e-05 25.5 0.2 1.5e-05 25.3 0.2 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PQQ_2 PF13360.6 gi|449067969|ref|YP_007435051.1| - 0.066 12.8 0.0 0.072 12.7 0.0 1.0 1 0 0 1 1 1 0 PQQ-like domain AA_permease PF00324.21 gi|449067971|ref|YP_007435053.1| - 4.4e-24 84.9 56.5 6.5e-24 84.4 56.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|449067971|ref|YP_007435053.1| - 5.1e-14 51.9 59.8 7e-14 51.5 59.7 1.3 1 1 0 1 1 1 1 Amino acid permease MMPL PF03176.15 gi|449067972|ref|YP_007435054.1| - 5.4e-65 219.5 10.7 8.8e-33 113.6 1.1 2.4 2 0 0 2 2 2 2 MMPL family F1F0-ATPsyn_F PF10791.9 gi|449067972|ref|YP_007435054.1| - 0.039 14.4 0.0 0.27 11.7 0.0 2.5 1 1 0 1 1 1 0 Mitochondrial F1-F0 ATP synthase subunit F of fungi DUF3054 PF11255.8 gi|449067972|ref|YP_007435054.1| - 3.1 8.4 16.3 0.049 14.2 2.3 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3054) N6_N4_Mtase PF01555.18 gi|449067975|ref|YP_007435057.1| - 4.6e-42 144.3 0.1 6.1e-42 143.9 0.1 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|449067975|ref|YP_007435057.1| - 0.00039 20.2 0.0 0.017 14.8 0.0 2.3 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 SUV3_C PF12513.8 gi|449067975|ref|YP_007435057.1| - 0.0042 17.0 0.9 0.027 14.4 0.2 2.4 2 0 0 2 2 2 1 Mitochondrial degradasome RNA helicase subunit C terminal Pyr_redox PF00070.27 gi|449067976|ref|YP_007435058.1| - 0.032 14.8 0.3 13 6.4 0.2 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF2677 PF10838.8 gi|449067976|ref|YP_007435058.1| - 0.057 13.4 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2677) DUF2524 PF10732.9 gi|449067976|ref|YP_007435058.1| - 0.18 12.1 3.1 0.7 10.2 2.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) HEPN PF05168.14 gi|449067979|ref|YP_007435061.1| - 1.1e-28 99.8 0.8 1.4e-28 99.4 0.8 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|449067980|ref|YP_007435062.1| - 1e-07 32.2 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|449067980|ref|YP_007435062.1| - 4.7e-07 29.8 0.0 6.7e-07 29.3 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Kelch_1 PF01344.25 gi|449067980|ref|YP_007435062.1| - 0.076 12.6 0.2 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 Kelch motif Adenyl_cycl_N PF12633.7 gi|449067980|ref|YP_007435062.1| - 0.08 12.8 0.0 0.086 12.7 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain HTH_20 PF12840.7 gi|449067981|ref|YP_007435063.1| - 3.2e-10 39.9 0.0 9.5e-10 38.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|449067981|ref|YP_007435063.1| - 2.2e-06 27.5 0.2 1.7e-05 24.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF4097 PF13349.6 gi|449067981|ref|YP_007435063.1| - 0.00048 19.6 4.3 0.00064 19.1 4.3 1.4 1 0 0 1 1 1 1 Putative adhesin HTH_24 PF13412.6 gi|449067981|ref|YP_007435063.1| - 0.003 17.1 0.2 0.012 15.1 0.2 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|449067981|ref|YP_007435063.1| - 0.012 15.6 0.2 0.031 14.2 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix PPC PF04151.15 gi|449067981|ref|YP_007435063.1| - 0.032 15.3 2.5 6.5 7.9 0.0 3.6 1 1 1 2 2 2 0 Bacterial pre-peptidase C-terminal domain Mrr_N PF14338.6 gi|449067981|ref|YP_007435063.1| - 0.15 12.2 0.2 2.6 8.2 0.0 2.4 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_27 PF13463.6 gi|449067981|ref|YP_007435063.1| - 0.16 12.5 0.0 0.37 11.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PIN PF01850.21 gi|449067983|ref|YP_007435065.1| - 6.5e-11 42.8 1.4 1.1e-10 42.1 1.4 1.3 1 1 0 1 1 1 1 PIN domain DUF973 PF06157.11 gi|449067984|ref|YP_007435066.1| - 0.0074 15.4 2.5 0.0074 15.4 2.5 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF973) DUF2835 PF11197.8 gi|449067984|ref|YP_007435066.1| - 0.081 12.8 0.2 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2835) DUF956 PF06115.11 gi|449067984|ref|YP_007435066.1| - 0.15 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF956) DUF2226 PF09987.9 gi|449067986|ref|YP_007435068.1| - 0.012 14.9 0.1 0.014 14.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) BESS PF02944.20 gi|449067986|ref|YP_007435068.1| - 0.17 11.8 0.1 0.29 11.0 0.1 1.4 1 0 0 1 1 1 0 BESS motif MazE_antitoxin PF04014.18 gi|449067987|ref|YP_007435069.1| - 4e-06 26.6 0.7 7.8e-06 25.7 0.7 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|449067987|ref|YP_007435069.1| - 0.006 16.5 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like PIN PF01850.21 gi|449067988|ref|YP_007435070.1| - 5.7e-14 52.7 0.1 6.9e-14 52.4 0.1 1.0 1 0 0 1 1 1 1 PIN domain Cas_DxTHG PF09455.10 gi|449067990|ref|YP_007435072.1| - 3.7e-10 39.9 6.3 8.1e-10 38.8 6.3 1.5 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Minor_capsid_3 PF12691.7 gi|449067990|ref|YP_007435072.1| - 0.026 14.9 0.4 10 6.5 0.0 2.6 1 1 1 2 2 2 0 Minor capsid protein from bacteriophage Nop14 PF04147.12 gi|449067990|ref|YP_007435072.1| - 0.081 11.1 0.1 0.11 10.7 0.1 1.1 1 0 0 1 1 1 0 Nop14-like family Antimicrobial22 PF16047.5 gi|449067990|ref|YP_007435072.1| - 1.4 8.9 5.5 0.13 12.1 0.8 1.7 2 0 0 2 2 2 0 Frog antimicrobial peptide DUF4282 PF14110.6 gi|449067991|ref|YP_007435073.1| - 0.0042 17.8 2.0 0.0053 17.5 2.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4282) Orf78 PF06024.12 gi|449067991|ref|YP_007435073.1| - 0.03 14.6 0.1 0.03 14.6 0.1 1.0 1 0 0 1 1 1 0 Orf78 (ac78) DUF5383 PF17355.2 gi|449067991|ref|YP_007435073.1| - 0.044 14.2 0.2 0.051 14.0 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5383) Stevor PF17410.2 gi|449067991|ref|YP_007435073.1| - 0.21 11.1 0.3 0.2 11.2 0.3 1.0 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF4083 PF13314.6 gi|449067991|ref|YP_007435073.1| - 9.3 6.3 8.6 3.7 7.5 5.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) ODV-E18 PF10717.9 gi|449067991|ref|YP_007435073.1| - 9.7 6.1 9.1 14 5.6 9.1 1.4 1 1 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 AAA_5 PF07728.14 gi|449067994|ref|YP_007435076.1| - 3.4e-17 62.7 0.0 2e-16 60.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|449067994|ref|YP_007435076.1| - 1.3e-06 28.3 0.0 2.6e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|449067994|ref|YP_007435076.1| - 2.5e-06 28.0 0.0 4.7e-05 23.8 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|449067994|ref|YP_007435076.1| - 8e-05 23.2 0.0 0.00048 20.7 0.0 2.4 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|449067994|ref|YP_007435076.1| - 0.00056 20.3 0.0 0.0014 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|449067994|ref|YP_007435076.1| - 0.00072 19.3 0.0 0.0019 18.0 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|449067994|ref|YP_007435076.1| - 0.00076 19.0 0.0 0.0057 16.2 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|449067994|ref|YP_007435076.1| - 0.0041 17.5 0.0 0.01 16.2 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.6 gi|449067994|ref|YP_007435076.1| - 0.0055 17.0 0.0 0.024 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|449067994|ref|YP_007435076.1| - 0.0064 15.9 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|449067994|ref|YP_007435076.1| - 0.0097 15.8 0.1 0.32 10.8 0.0 2.8 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|449067994|ref|YP_007435076.1| - 0.054 13.8 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|449067994|ref|YP_007435076.1| - 0.068 12.8 0.0 0.088 12.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Arch_fla_DE PF04659.13 gi|449067994|ref|YP_007435076.1| - 0.12 12.3 0.0 0.36 10.7 0.0 1.8 1 0 0 1 1 1 0 Archaeal flagella protein AAA_33 PF13671.6 gi|449067994|ref|YP_007435076.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|449067997|ref|YP_007435079.1| - 1.1e-29 103.1 0.0 2.4e-29 102.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|449067997|ref|YP_007435079.1| - 1.1e-11 45.0 0.3 2.4e-11 43.9 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4143) DUF1947 PF09183.10 gi|449067997|ref|YP_007435079.1| - 0.024 14.9 1.4 3.2 8.1 0.0 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1947) HTH_Tnp_1_2 PF13022.6 gi|449067997|ref|YP_007435079.1| - 0.032 14.4 0.2 0.57 10.3 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix of insertion element transposase Poty_PP PF08440.10 gi|449067997|ref|YP_007435079.1| - 0.1 11.7 0.7 0.19 10.8 0.7 1.4 1 1 0 1 1 1 0 Potyviridae polyprotein HTH_24 PF13412.6 gi|449067998|ref|YP_007435080.1| - 2.4e-06 27.0 0.1 5.1e-06 25.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|449067998|ref|YP_007435080.1| - 4.8e-05 23.1 0.0 8.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2407 PF10302.9 gi|449067998|ref|YP_007435080.1| - 0.00057 20.4 0.4 0.039 14.5 0.1 2.0 1 1 1 2 2 2 1 DUF2407 ubiquitin-like domain HTH_45 PF14947.6 gi|449067998|ref|YP_007435080.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Topoisom_bac PF01131.20 gi|449067998|ref|YP_007435080.1| - 0.0051 15.9 0.1 0.0052 15.8 0.1 1.1 1 0 0 1 1 1 1 DNA topoisomerase MarR_2 PF12802.7 gi|449067998|ref|YP_007435080.1| - 0.0057 16.5 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 MarR family HemN_C PF06969.16 gi|449067998|ref|YP_007435080.1| - 0.0077 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain AbiEi_4 PF13338.6 gi|449067998|ref|YP_007435080.1| - 0.04 14.1 0.1 0.24 11.6 0.1 2.2 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_23 PF13384.6 gi|449067998|ref|YP_007435080.1| - 0.1 12.5 0.2 0.18 11.7 0.2 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF973 PF06157.11 gi|449067999|ref|YP_007435081.1| - 1.1e-14 54.2 19.5 1.5e-11 43.9 2.0 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF5392 PF17370.2 gi|449067999|ref|YP_007435081.1| - 0.5 10.4 3.6 0.23 11.5 1.4 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5392) Phage_holin_3_6 PF07332.11 gi|449067999|ref|YP_007435081.1| - 0.62 10.1 14.7 0.061 13.4 4.5 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1129 PF06570.11 gi|449067999|ref|YP_007435081.1| - 1.1 8.7 6.5 0.43 10.0 2.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) PIN PF01850.21 gi|449068000|ref|YP_007435082.1| - 0.00054 20.5 0.3 0.00062 20.3 0.3 1.1 1 0 0 1 1 1 1 PIN domain Glyco_transf_11 PF01531.16 gi|449068000|ref|YP_007435082.1| - 0.058 12.6 0.5 0.12 11.6 0.2 1.6 1 1 1 2 2 2 0 Glycosyl transferase family 11 ABC_tran PF00005.27 gi|449068003|ref|YP_007435085.1| - 1.5e-22 80.5 0.0 2.3e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|449068003|ref|YP_007435085.1| - 5.7e-09 36.2 1.0 2.9e-05 24.1 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449068003|ref|YP_007435085.1| - 8e-06 25.4 1.1 0.091 12.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|449068003|ref|YP_007435085.1| - 3.4e-05 23.5 0.2 6.2e-05 22.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|449068003|ref|YP_007435085.1| - 0.00016 21.5 0.4 0.00026 20.8 0.4 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|449068003|ref|YP_007435085.1| - 0.00023 21.7 0.0 0.00036 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|449068003|ref|YP_007435085.1| - 0.0017 18.3 0.5 0.0035 17.3 0.2 1.7 2 0 0 2 2 2 1 RsgA GTPase DLIC PF05783.11 gi|449068003|ref|YP_007435085.1| - 0.0021 17.0 0.1 0.0033 16.3 0.1 1.3 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) T2SSE PF00437.20 gi|449068003|ref|YP_007435085.1| - 0.0029 16.7 0.2 0.0057 15.7 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein PIF1 PF05970.14 gi|449068003|ref|YP_007435085.1| - 0.011 15.0 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Mg_chelatase PF01078.21 gi|449068003|ref|YP_007435085.1| - 0.015 14.7 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|449068003|ref|YP_007435085.1| - 0.017 15.5 0.0 0.032 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|449068003|ref|YP_007435085.1| - 0.037 13.4 0.2 0.064 12.6 0.2 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|449068003|ref|YP_007435085.1| - 0.039 13.9 0.0 0.071 13.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.20 gi|449068003|ref|YP_007435085.1| - 0.065 12.4 0.2 0.1 11.7 0.2 1.3 1 1 0 1 1 1 0 G-protein alpha subunit PduV-EutP PF10662.9 gi|449068003|ref|YP_007435085.1| - 0.073 12.8 0.2 0.47 10.2 0.1 2.2 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|449068003|ref|YP_007435085.1| - 0.076 12.9 0.1 0.28 11.1 0.1 2.0 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.6 gi|449068003|ref|YP_007435085.1| - 0.097 12.9 0.2 0.38 11.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|449068003|ref|YP_007435085.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_13 PF13166.6 gi|449068003|ref|YP_007435085.1| - 0.11 11.1 0.2 0.17 10.5 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|449068003|ref|YP_007435085.1| - 0.15 12.4 0.1 0.41 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|449068003|ref|YP_007435085.1| - 0.17 11.4 0.2 0.36 10.4 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RHH_1 PF01402.21 gi|449068006|ref|YP_007435088.1| - 0.0032 17.4 0.1 0.0032 17.4 0.1 2.8 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family Fur_reg_FbpA PF13076.6 gi|449068006|ref|YP_007435088.1| - 0.005 16.5 0.3 0.036 13.8 0.0 2.2 2 0 0 2 2 2 1 Fur-regulated basic protein A RHH_8 PF17723.1 gi|449068006|ref|YP_007435088.1| - 0.0058 16.8 0.2 0.0058 16.8 0.2 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DUF5388 PF17363.2 gi|449068006|ref|YP_007435088.1| - 0.082 13.1 0.1 0.35 11.1 0.1 1.9 1 1 0 1 1 1 0 Family of unknown function (DUF5388) HTH_23 PF13384.6 gi|449068010|ref|YP_007435092.1| - 5.5e-05 22.8 1.6 0.0016 18.2 0.3 2.3 1 1 1 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|449068010|ref|YP_007435092.1| - 0.00039 19.9 0.3 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Mga PF05043.13 gi|449068010|ref|YP_007435092.1| - 0.00043 20.8 0.2 0.04 14.5 0.0 2.2 1 1 1 2 2 2 2 Mga helix-turn-helix domain HTH_11 PF08279.12 gi|449068010|ref|YP_007435092.1| - 0.00058 19.7 0.2 0.0014 18.6 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_19 PF12844.7 gi|449068010|ref|YP_007435092.1| - 0.00066 19.7 0.3 0.0011 19.0 0.3 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|449068010|ref|YP_007435092.1| - 0.00072 19.6 0.0 0.0018 18.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_Tnp_1_2 PF13022.6 gi|449068010|ref|YP_007435092.1| - 0.00079 19.6 0.6 0.0012 19.0 0.4 1.4 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_28 PF13518.6 gi|449068010|ref|YP_007435092.1| - 0.00084 19.4 0.1 0.0016 18.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|449068010|ref|YP_007435092.1| - 0.0015 18.5 0.6 0.63 10.1 0.0 2.5 2 1 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain UPF0122 PF04297.14 gi|449068010|ref|YP_007435092.1| - 0.0016 18.7 0.4 0.0022 18.2 0.4 1.3 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like TetR_N PF00440.23 gi|449068010|ref|YP_007435092.1| - 0.0038 17.0 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MarR PF01047.22 gi|449068010|ref|YP_007435092.1| - 0.0046 16.9 0.1 0.055 13.4 0.0 2.6 3 1 0 3 3 3 1 MarR family HTH_Tnp_1 PF01527.20 gi|449068010|ref|YP_007435092.1| - 0.005 17.1 0.0 0.0086 16.4 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.6 gi|449068010|ref|YP_007435092.1| - 0.0055 16.7 0.0 0.011 15.8 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix HTH_5 PF01022.20 gi|449068010|ref|YP_007435092.1| - 0.0056 16.5 0.0 0.017 15.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Pox_D3 PF04580.13 gi|449068010|ref|YP_007435092.1| - 0.0094 15.6 0.4 0.011 15.4 0.4 1.2 1 0 0 1 1 1 1 Chordopoxvirinae D3 protein P22_Cro PF14549.6 gi|449068010|ref|YP_007435092.1| - 0.014 15.3 0.1 0.03 14.2 0.1 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Phage_AlpA PF05930.12 gi|449068010|ref|YP_007435092.1| - 0.015 15.2 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_40 PF14493.6 gi|449068010|ref|YP_007435092.1| - 0.017 15.6 0.3 0.026 15.0 0.3 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|449068010|ref|YP_007435092.1| - 0.023 14.4 0.1 0.057 13.2 0.1 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_CodY PF08222.11 gi|449068010|ref|YP_007435092.1| - 0.031 13.8 0.2 0.069 12.7 0.1 1.7 1 1 0 1 1 1 0 CodY helix-turn-helix domain HTH_10 PF04967.12 gi|449068010|ref|YP_007435092.1| - 0.047 13.5 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain MerR_1 PF13411.6 gi|449068010|ref|YP_007435092.1| - 0.061 13.4 0.4 0.12 12.5 0.4 1.6 1 1 0 1 1 1 0 MerR HTH family regulatory protein Sigma70_r4_2 PF08281.12 gi|449068010|ref|YP_007435092.1| - 0.072 12.8 0.1 0.18 11.5 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|449068010|ref|YP_007435092.1| - 0.076 13.1 0.5 0.19 11.8 0.4 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase YdaS_antitoxin PF15943.5 gi|449068010|ref|YP_007435092.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_Tnp_Tc3_1 PF11427.8 gi|449068010|ref|YP_007435092.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Tc3 transposase Cas6_N PF17952.1 gi|449068013|ref|YP_007435095.1| - 8.7e-42 142.0 1.2 1.4e-41 141.4 1.2 1.3 1 0 0 1 1 1 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|449068013|ref|YP_007435095.1| - 5.7e-17 62.1 0.1 1.4e-16 60.9 0.1 1.7 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Cas_Cas6 PF01881.16 gi|449068013|ref|YP_007435095.1| - 0.00017 22.2 2.1 0.00044 20.8 0.5 2.1 1 1 1 2 2 2 1 CRISPR associated protein Cas6 DUF223 PF02721.14 gi|449068013|ref|YP_007435095.1| - 0.0063 16.8 0.2 0.014 15.7 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF223 DUF4883 PF16224.5 gi|449068013|ref|YP_007435095.1| - 0.042 14.1 0.9 0.096 12.9 0.1 1.9 2 0 0 2 2 2 0 DOmain of unknown function (DUF4883) DUF2919 PF11143.8 gi|449068014|ref|YP_007435096.1| - 0.0012 19.2 1.6 0.0019 18.6 1.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2919) AA_permease_2 PF13520.6 gi|449068014|ref|YP_007435096.1| - 0.012 14.5 3.2 0.014 14.3 3.2 1.1 1 0 0 1 1 1 0 Amino acid permease CbtA PF09490.10 gi|449068014|ref|YP_007435096.1| - 0.012 15.4 0.8 0.017 14.9 0.8 1.2 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF4234 PF14018.6 gi|449068014|ref|YP_007435096.1| - 0.18 11.9 1.7 0.22 11.7 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4234) COX2_TM PF02790.15 gi|449068014|ref|YP_007435096.1| - 5.2 7.3 7.7 0.44 10.7 1.2 2.3 2 1 1 3 3 3 0 Cytochrome C oxidase subunit II, transmembrane domain CRISPR_Cas2 PF09827.9 gi|449068016|ref|YP_007435098.1| - 2.8e-19 69.1 0.1 3.3e-19 68.8 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|449068017|ref|YP_007435099.1| - 3.8e-63 213.3 0.1 4.6e-63 213.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 B12-binding PF02310.19 gi|449068018|ref|YP_007435100.1| - 0.045 13.8 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain His_Phos_1 PF00300.22 gi|449068019|ref|YP_007435101.1| - 4.4e-14 52.6 0.0 5.1e-12 45.9 0.0 2.0 2 0 0 2 2 2 2 Histidine phosphatase superfamily (branch 1) Ppx-GppA PF02541.16 gi|449068020|ref|YP_007435102.1| - 9e-41 140.2 0.0 1.3e-40 139.6 0.0 1.2 1 0 0 1 1 1 1 Ppx/GppA phosphatase family DDR PF08841.10 gi|449068020|ref|YP_007435102.1| - 0.011 14.8 0.0 0.018 14.0 0.0 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Thymidylate_kin PF02223.17 gi|449068021|ref|YP_007435103.1| - 1e-28 100.3 0.0 3.3e-28 98.6 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|449068021|ref|YP_007435103.1| - 4.7e-05 23.3 0.1 7.7e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|449068021|ref|YP_007435103.1| - 0.004 17.7 0.0 0.011 16.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|449068021|ref|YP_007435103.1| - 0.049 14.1 0.1 0.63 10.5 0.0 2.7 2 1 0 2 2 2 0 AAA domain PRK PF00485.18 gi|449068021|ref|YP_007435103.1| - 0.09 12.5 0.2 6.2 6.5 0.1 2.2 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|449068021|ref|YP_007435103.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.7 1 1 1 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|449068022|ref|YP_007435104.1| - 2.5e-11 43.6 0.0 3e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|449068022|ref|YP_007435104.1| - 0.0013 18.7 0.2 0.081 12.8 0.0 2.2 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|449068022|ref|YP_007435104.1| - 0.0024 18.4 0.0 0.0067 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|449068022|ref|YP_007435104.1| - 0.014 15.8 0.0 0.019 15.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain CPT PF07931.12 gi|449068022|ref|YP_007435104.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein KTI12 PF08433.10 gi|449068022|ref|YP_007435104.1| - 0.018 14.5 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.14 gi|449068022|ref|YP_007435104.1| - 0.024 14.5 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|449068022|ref|YP_007435104.1| - 0.033 14.0 0.0 0.083 12.7 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|449068022|ref|YP_007435104.1| - 0.12 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain CHAD PF05235.14 gi|449068023|ref|YP_007435105.1| - 5.7e-06 26.5 2.0 0.0014 18.6 1.5 2.4 1 1 0 1 1 1 1 CHAD domain DUF3093 PF11292.8 gi|449068024|ref|YP_007435106.1| - 0.05 13.9 0.0 0.061 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) Resolvase PF00239.21 gi|449068025|ref|YP_007435107.1| - 2.7e-24 86.0 0.1 3.7e-24 85.5 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|449068025|ref|YP_007435107.1| - 1.9e-13 50.3 0.2 3.9e-13 49.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|449068025|ref|YP_007435107.1| - 7.4e-06 25.6 0.3 1.8e-05 24.4 0.1 1.8 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.6 gi|449068025|ref|YP_007435107.1| - 5.5e-05 23.2 0.1 0.00011 22.2 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|449068025|ref|YP_007435107.1| - 0.00059 19.6 0.0 0.0015 18.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|449068025|ref|YP_007435107.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|449068025|ref|YP_007435107.1| - 0.066 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Helicase_C PF00271.31 gi|449068025|ref|YP_007435107.1| - 0.078 13.3 0.0 0.3 11.4 0.0 1.8 1 1 1 2 2 2 0 Helicase conserved C-terminal domain Phage_AlpA PF05930.12 gi|449068025|ref|YP_007435107.1| - 0.095 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_Tnp_1 PF01527.20 gi|449068025|ref|YP_007435107.1| - 0.12 12.7 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Transposase OrfB_Zn_ribbon PF07282.11 gi|449068026|ref|YP_007435108.1| - 5.4e-18 64.7 0.0 1e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF3427 PF11907.8 gi|449068026|ref|YP_007435108.1| - 0.06 12.6 0.8 0.65 9.2 0.0 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF3427) ATPase_2 PF01637.18 gi|449068028|ref|YP_007435110.1| - 2.7e-21 76.6 0.3 4.4e-21 75.9 0.3 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|449068028|ref|YP_007435110.1| - 6.1e-09 36.0 0.4 0.00068 19.7 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|449068028|ref|YP_007435110.1| - 1.3e-06 28.7 0.0 2.5e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|449068028|ref|YP_007435110.1| - 4.5e-05 23.9 0.0 7.7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|449068028|ref|YP_007435110.1| - 0.00058 20.3 0.0 0.0071 16.8 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.19 gi|449068028|ref|YP_007435110.1| - 0.0012 18.6 0.0 0.004 17.0 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ER PF01133.17 gi|449068028|ref|YP_007435110.1| - 0.045 13.8 0.0 0.18 11.9 0.0 2.0 1 0 0 1 1 1 0 Enhancer of rudimentary PadR PF03551.14 gi|449068028|ref|YP_007435110.1| - 0.056 13.4 0.1 0.17 11.9 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family TPR_11 PF13414.6 gi|449068029|ref|YP_007435111.1| - 1.6e-71 235.7 50.6 2.9e-11 42.9 0.3 10.4 4 2 6 10 10 10 10 TPR repeat TPR_2 PF07719.17 gi|449068029|ref|YP_007435111.1| - 9.7e-69 222.1 40.0 6.4e-09 35.3 0.5 10.9 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_1 PF00515.28 gi|449068029|ref|YP_007435111.1| - 1.7e-63 208.0 50.8 6.6e-08 32.1 0.6 10.9 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_8 PF13181.6 gi|449068029|ref|YP_007435111.1| - 2.8e-51 167.5 33.6 1.6e-05 24.7 0.0 10.5 11 0 0 11 11 10 10 Tetratricopeptide repeat TPR_17 PF13431.6 gi|449068029|ref|YP_007435111.1| - 2.7e-47 155.8 30.4 1.1e-05 25.4 0.0 11.2 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_16 PF13432.6 gi|449068029|ref|YP_007435111.1| - 1.8e-42 143.7 4.6 2.3e-07 31.3 0.5 6.9 3 2 4 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.6 gi|449068029|ref|YP_007435111.1| - 9.9e-39 128.7 1.4 0.0057 17.4 0.1 10.3 1 1 8 10 10 10 9 Tetratricopeptide repeat TPR_9 PF13371.6 gi|449068029|ref|YP_007435111.1| - 4.2e-34 116.5 0.3 2.2e-06 27.7 0.0 6.4 4 2 1 6 6 6 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|449068029|ref|YP_007435111.1| - 1.4e-28 98.9 15.8 2.8e-07 30.6 0.1 5.2 2 1 3 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|449068029|ref|YP_007435111.1| - 3e-26 91.7 16.5 5.3e-07 30.0 0.1 7.0 3 2 5 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.6 gi|449068029|ref|YP_007435111.1| - 4.8e-16 58.8 19.1 0.00026 21.2 0.1 7.3 3 3 3 6 6 6 5 Tetratricopeptide repeat NARP1 PF12569.8 gi|449068029|ref|YP_007435111.1| - 1e-15 57.7 15.4 0.00016 20.7 0.1 7.0 1 1 6 8 8 8 6 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|449068029|ref|YP_007435111.1| - 2.9e-15 55.8 21.3 0.071 13.8 0.0 9.3 10 0 0 10 10 9 3 Tetratricopeptide repeat TPR_20 PF14561.6 gi|449068029|ref|YP_007435111.1| - 8.2e-13 48.5 2.2 0.032 14.6 0.0 6.1 3 2 4 7 7 7 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|449068029|ref|YP_007435111.1| - 2.2e-10 40.0 17.0 0.34 10.9 0.2 8.9 9 0 0 9 9 9 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|449068029|ref|YP_007435111.1| - 2.7e-10 39.5 11.5 0.048 13.7 0.1 9.2 10 0 0 10 10 10 1 Tetratricopeptide repeat BTAD PF03704.17 gi|449068029|ref|YP_007435111.1| - 8e-10 39.3 3.1 0.034 14.6 0.1 5.7 3 3 4 7 7 7 2 Bacterial transcriptional activator domain ANAPC5 PF12862.7 gi|449068029|ref|YP_007435111.1| - 4.2e-08 33.2 3.2 0.75 9.9 0.2 5.8 3 2 4 7 7 6 2 Anaphase-promoting complex subunit 5 Fis1_TPR_C PF14853.6 gi|449068029|ref|YP_007435111.1| - 2.4e-07 30.7 19.1 0.027 14.5 0.1 7.5 5 2 4 9 9 8 3 Fis1 C-terminal tetratricopeptide repeat Syntaxin-6_N PF09177.11 gi|449068029|ref|YP_007435111.1| - 2.6e-07 31.1 0.5 0.3 11.7 0.1 4.9 2 1 4 6 6 6 2 Syntaxin 6, N-terminal TOM20_plant PF06552.12 gi|449068029|ref|YP_007435111.1| - 1.8e-05 24.6 6.5 0.095 12.4 0.0 5.3 1 1 5 7 7 7 1 Plant specific mitochondrial import receptor subunit TOM20 SHNi-TPR PF10516.9 gi|449068029|ref|YP_007435111.1| - 6.9e-05 22.2 12.0 3.9 7.0 0.0 7.5 9 0 0 9 9 7 1 SHNi-TPR DUF3856 PF12968.7 gi|449068029|ref|YP_007435111.1| - 0.0003 20.9 1.7 36 4.4 0.0 6.3 3 1 0 6 6 6 0 Domain of Unknown Function (DUF3856) EST1_DNA_bind PF10373.9 gi|449068029|ref|YP_007435111.1| - 0.0045 16.5 1.9 8.6 5.7 0.0 4.3 4 0 0 4 4 4 0 Est1 DNA/RNA binding domain YfiO PF13525.6 gi|449068029|ref|YP_007435111.1| - 0.0058 16.4 19.8 3.6 7.3 8.8 4.7 1 1 1 2 2 2 1 Outer membrane lipoprotein MIT PF04212.18 gi|449068029|ref|YP_007435111.1| - 0.014 15.5 19.2 10 6.3 0.1 8.0 6 3 3 9 9 8 0 MIT (microtubule interacting and transport) domain PA28_beta PF02252.18 gi|449068029|ref|YP_007435111.1| - 0.034 13.8 7.5 2 8.1 0.1 4.8 4 1 1 5 5 5 0 Proteasome activator pa28 beta subunit HrpB1_HrpK PF09613.10 gi|449068029|ref|YP_007435111.1| - 0.058 13.0 0.0 12 5.6 0.0 4.0 3 2 3 6 6 5 0 Bacterial type III secretion protein (HrpB1_HrpK) TFIIA_gamma_N PF02268.16 gi|449068029|ref|YP_007435111.1| - 0.065 13.3 2.2 13 5.8 0.0 4.6 5 0 0 5 5 5 0 Transcription initiation factor IIA, gamma subunit, helical domain Wzy_C_2 PF11846.8 gi|449068029|ref|YP_007435111.1| - 0.19 11.6 1.3 1 9.3 0.4 2.6 1 1 1 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal CAS_CSE1 PF03378.15 gi|449068029|ref|YP_007435111.1| - 0.2 10.1 2.1 7.7 4.9 0.0 3.4 2 2 0 3 3 3 0 CAS/CSE protein, C-terminus Gin PF10764.9 gi|449068029|ref|YP_007435111.1| - 0.52 10.3 10.5 3.8 7.5 0.2 5.7 7 0 0 7 7 6 0 Inhibitor of sigma-G Gin Biotin_carb_N PF00289.22 gi|449068029|ref|YP_007435111.1| - 0.53 10.9 2.6 51 4.5 0.0 4.4 3 3 2 5 5 5 0 Biotin carboxylase, N-terminal domain KN17_SH3 PF18131.1 gi|449068029|ref|YP_007435111.1| - 0.57 10.3 10.9 5.1 7.3 0.0 4.9 5 0 0 5 5 4 0 KN17 SH3-like C-terminal domain Streptin-Immun PF11083.8 gi|449068029|ref|YP_007435111.1| - 3.3 8.2 8.8 23 5.5 0.2 3.8 4 1 1 5 5 4 0 Lantibiotic streptin immunity protein Glycos_transf_2 PF00535.26 gi|449068030|ref|YP_007435112.1| - 4.3e-05 23.4 0.1 0.00019 21.3 0.1 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 NicO PF03824.16 gi|449068031|ref|YP_007435113.1| - 2.1e-88 296.3 13.4 2.1e-88 296.3 13.4 1.5 2 0 0 2 2 2 1 High-affinity nickel-transport protein SHR3_chaperone PF08229.11 gi|449068031|ref|YP_007435113.1| - 0.38 9.7 5.1 0.23 10.4 0.8 2.6 2 0 0 2 2 2 0 ER membrane protein SH3 DUF2231 PF09990.9 gi|449068031|ref|YP_007435113.1| - 2.2 8.8 7.0 0.33 11.4 0.8 2.8 2 1 1 3 3 3 0 Predicted membrane protein (DUF2231) CcdA PF07362.12 gi|449068033|ref|YP_007435115.1| - 0.022 15.2 0.4 0.042 14.3 0.4 1.7 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA Eisosome1 PF12757.7 gi|449068033|ref|YP_007435115.1| - 0.033 14.4 0.0 0.036 14.3 0.0 1.1 1 0 0 1 1 1 0 Eisosome protein 1 Mistic PF11458.8 gi|449068033|ref|YP_007435115.1| - 0.047 13.7 0.1 0.075 13.0 0.1 1.3 1 0 0 1 1 1 0 Membrane-integrating protein Mistic PIN PF01850.21 gi|449068034|ref|YP_007435116.1| - 1.9e-14 54.2 3.6 2.2e-14 54.0 3.6 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|449068034|ref|YP_007435116.1| - 0.0081 15.9 0.1 0.015 15.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) COXG PF06240.13 gi|449068035|ref|YP_007435117.1| - 7.5e-30 103.5 0.6 8.4e-30 103.4 0.6 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) ParA PF10609.9 gi|449068035|ref|YP_007435117.1| - 0.0022 17.5 0.1 0.003 17.1 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DAO PF01266.24 gi|449068036|ref|YP_007435118.1| - 1.5e-14 54.4 0.0 2e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase DUF4352 PF11611.8 gi|449068036|ref|YP_007435118.1| - 1.3e-05 25.4 6.3 2.7e-05 24.4 5.4 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4352) SpoIIIAH PF12685.7 gi|449068036|ref|YP_007435118.1| - 0.0096 15.8 2.3 0.019 14.8 2.3 1.5 1 0 0 1 1 1 1 SpoIIIAH-like protein DUF4834 PF16118.5 gi|449068036|ref|YP_007435118.1| - 0.019 15.9 0.3 0.045 14.7 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) MatB PF16449.5 gi|449068036|ref|YP_007435118.1| - 0.12 12.2 4.9 0.21 11.4 3.7 1.9 2 0 0 2 2 2 0 Fimbrillin MatB Shisa PF13908.6 gi|449068036|ref|YP_007435118.1| - 0.31 11.2 2.0 0.48 10.7 2.0 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator YhfC PF10086.9 gi|449068037|ref|YP_007435119.1| - 0.00024 20.6 7.0 0.048 13.0 0.0 2.2 1 1 1 2 2 2 2 YhfC intramembrane metalloprotease CcdA PF07362.12 gi|449068038|ref|YP_007435120.1| - 1.3e-08 35.1 2.8 1.6e-08 34.9 2.8 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA Nup84_Nup100 PF04121.13 gi|449068038|ref|YP_007435120.1| - 0.0025 16.0 1.2 0.0029 15.8 1.2 1.1 1 0 0 1 1 1 1 Nuclear pore protein 84 / 107 Histone_HNS PF00816.21 gi|449068038|ref|YP_007435120.1| - 0.046 14.6 2.9 0.4 11.5 0.4 2.1 1 1 1 2 2 2 0 H-NS histone family RHH_1 PF01402.21 gi|449068038|ref|YP_007435120.1| - 0.055 13.4 0.3 0.055 13.4 0.3 2.5 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|449068038|ref|YP_007435120.1| - 0.073 13.8 5.8 0.092 13.5 5.8 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor PIN PF01850.21 gi|449068039|ref|YP_007435121.1| - 2.9e-05 24.5 0.6 4.1e-05 24.1 0.6 1.2 1 0 0 1 1 1 1 PIN domain p450 PF00067.22 gi|449068040|ref|YP_007435122.1| - 3.9e-23 81.9 0.2 4e-19 68.7 0.2 3.0 2 1 1 3 3 3 3 Cytochrome P450 DUF973 PF06157.11 gi|449068041|ref|YP_007435123.1| - 6.8e-87 291.4 41.4 3.2e-86 289.2 41.4 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|449068041|ref|YP_007435123.1| - 1e-06 29.0 34.9 1.7e-06 28.4 23.9 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF996) Isochorismatase PF00857.20 gi|449068042|ref|YP_007435124.1| - 2.7e-29 102.6 0.0 3.3e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family MFS_1 PF07690.16 gi|449068043|ref|YP_007435125.1| - 3.4e-60 203.9 53.2 1.3e-58 198.6 46.7 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449068043|ref|YP_007435125.1| - 1.7e-08 33.8 15.6 1.7e-08 33.8 15.6 2.7 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|449068043|ref|YP_007435125.1| - 3.7e-05 22.3 9.8 3.7e-05 22.3 9.8 2.2 2 0 0 2 2 2 1 Transmembrane secretion effector Fuseless PF15993.5 gi|449068044|ref|YP_007435126.1| - 0.0019 17.4 1.8 0.002 17.4 1.8 1.0 1 0 0 1 1 1 1 Fuseless Phage_holin_3_6 PF07332.11 gi|449068044|ref|YP_007435126.1| - 0.16 12.0 2.3 0.2 11.7 2.3 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SecE PF00584.20 gi|449068044|ref|YP_007435126.1| - 0.42 10.6 6.6 0.59 10.1 1.7 2.2 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex DUF4220 PF13968.6 gi|449068044|ref|YP_007435126.1| - 0.63 9.4 3.3 0.7 9.2 3.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4220) Cytochrom_B_N_2 PF13631.6 gi|449068045|ref|YP_007435127.1| - 4.5e-56 189.5 3.0 4.5e-56 189.5 3.0 3.6 5 0 0 5 5 5 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|449068045|ref|YP_007435127.1| - 2.2e-23 83.1 10.9 2.2e-23 83.1 10.9 2.2 3 0 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|449068045|ref|YP_007435127.1| - 0.00081 19.6 1.9 0.00081 19.6 1.9 3.8 5 1 0 5 5 5 2 Cytochrome b(C-terminal)/b6/petD COX1 PF00115.20 gi|449068046|ref|YP_007435128.1| - 2e-72 244.5 64.5 2.5e-72 244.1 64.5 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Rieske PF00355.26 gi|449068048|ref|YP_007435130.1| - 2.3e-08 33.8 0.1 9e-08 32.0 0.1 1.9 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2275 PF10039.9 gi|449068048|ref|YP_007435130.1| - 0.17 12.0 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2275) OAD_gamma PF04277.13 gi|449068049|ref|YP_007435131.1| - 0.35 11.5 0.4 0.35 11.5 0.4 2.2 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Phage_holin_3_6 PF07332.11 gi|449068050|ref|YP_007435132.1| - 5.9 7.0 10.4 0.72 9.9 6.0 1.7 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF3930 PF13067.6 gi|449068051|ref|YP_007435133.1| - 0.037 14.3 0.8 0.1 12.8 0.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3930) FliMN_C PF01052.20 gi|449068051|ref|YP_007435133.1| - 0.12 12.4 0.0 0.41 10.7 0.0 1.8 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term TssO PF17561.2 gi|449068051|ref|YP_007435133.1| - 2.9 8.0 5.4 1.3 9.1 0.5 2.3 2 0 0 2 2 2 0 Type VI secretion system, TssO Nramp PF01566.18 gi|449068052|ref|YP_007435134.1| - 4.4e-39 134.5 21.2 5.9e-39 134.1 21.2 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PfaD_N PF18328.1 gi|449068052|ref|YP_007435134.1| - 0.015 15.2 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Fatty acid synthase subunit PfaD N-terminal domain Sugar_tr PF00083.24 gi|449068053|ref|YP_007435135.1| - 6.5e-51 173.6 22.4 8.1e-51 173.3 22.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|449068053|ref|YP_007435135.1| - 1.8e-22 79.7 35.5 1.8e-22 79.7 35.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1129 PF06570.11 gi|449068053|ref|YP_007435135.1| - 1 8.8 5.7 0.24 10.9 0.5 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) SoxE PF06525.11 gi|449068054|ref|YP_007435136.1| - 4.4e-59 198.2 8.7 5e-59 198.0 8.7 1.0 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain NPCBM_assoc PF10633.9 gi|449068054|ref|YP_007435136.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase MFS_1 PF07690.16 gi|449068056|ref|YP_007435138.1| - 2.7e-20 72.6 39.3 1.3e-15 57.2 19.3 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|449068056|ref|YP_007435138.1| - 0.0018 17.2 17.5 0.34 9.7 3.0 3.6 2 2 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|449068056|ref|YP_007435138.1| - 0.0033 15.9 0.5 0.0064 14.9 0.5 1.4 1 0 0 1 1 1 1 Transmembrane secretion effector DUF3325 PF11804.8 gi|449068056|ref|YP_007435138.1| - 0.033 14.3 2.2 0.46 10.6 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3325) DUF2542 PF10808.8 gi|449068056|ref|YP_007435138.1| - 3.5 8.2 6.7 6.1 7.4 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2542) Fer4_10 PF13237.6 gi|449068057|ref|YP_007435139.1| - 3.7e-07 30.1 5.6 6e-07 29.5 5.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449068057|ref|YP_007435139.1| - 0.00021 21.4 5.1 0.00021 21.4 5.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449068057|ref|YP_007435139.1| - 0.0003 21.3 15.1 0.0018 18.8 8.8 2.4 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449068057|ref|YP_007435139.1| - 0.0007 19.6 8.4 0.085 13.0 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|449068057|ref|YP_007435139.1| - 0.0035 18.2 2.3 0.4 11.6 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|449068057|ref|YP_007435139.1| - 0.012 15.7 5.4 0.029 14.5 5.4 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF999 PF06198.11 gi|449068057|ref|YP_007435139.1| - 0.075 13.0 0.5 0.17 11.9 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF999) Fer4 PF00037.27 gi|449068057|ref|YP_007435139.1| - 0.13 12.1 10.5 0.071 13.0 0.9 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|449068057|ref|YP_007435139.1| - 0.17 12.1 2.6 0.34 11.1 2.6 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449068057|ref|YP_007435139.1| - 0.29 11.7 0.2 0.29 11.7 0.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|449068057|ref|YP_007435139.1| - 0.3 10.8 5.3 0.087 12.6 0.9 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|449068057|ref|YP_007435139.1| - 0.59 10.6 8.9 1.7 9.2 0.2 2.7 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449068057|ref|YP_007435139.1| - 1.1 10.0 6.3 8.8 7.1 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|449068057|ref|YP_007435139.1| - 1.2 9.4 14.2 1.2 9.4 2.5 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|449068057|ref|YP_007435139.1| - 1.4 10.0 12.2 5.6 8.1 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain FeoB_associated PF12669.7 gi|449068058|ref|YP_007435140.1| - 4.4 7.8 5.1 12 6.4 5.1 1.7 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Nitrate_red_del PF02613.15 gi|449068059|ref|YP_007435141.1| - 8.5e-17 61.5 0.0 1.1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.6 gi|449068060|ref|YP_007435142.1| - 1.3e-18 66.9 9.0 1.3e-18 66.9 9.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449068060|ref|YP_007435142.1| - 4.7e-12 46.3 17.1 2e-05 25.0 5.3 3.1 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449068060|ref|YP_007435142.1| - 5.6e-08 32.8 21.0 0.0013 18.9 7.2 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449068060|ref|YP_007435142.1| - 2.9e-07 30.5 21.9 4.4e-05 23.5 9.5 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|449068060|ref|YP_007435142.1| - 2.3e-05 24.7 16.9 6.1e-05 23.4 1.0 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449068060|ref|YP_007435142.1| - 7.6e-05 22.4 3.6 7.6e-05 22.4 3.6 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|449068060|ref|YP_007435142.1| - 0.00017 21.5 2.0 0.00017 21.5 2.0 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449068060|ref|YP_007435142.1| - 0.00037 20.8 35.0 0.0064 16.9 3.1 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|449068060|ref|YP_007435142.1| - 0.00046 20.1 28.3 0.00052 20.0 1.2 4.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|449068060|ref|YP_007435142.1| - 0.012 16.1 22.1 0.27 11.8 0.3 3.7 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|449068060|ref|YP_007435142.1| - 0.38 10.9 26.9 0.81 9.9 1.4 3.7 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449068060|ref|YP_007435142.1| - 1.3 10.0 23.2 2.8 9.0 0.3 3.8 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|449068060|ref|YP_007435142.1| - 4.8 8.3 39.2 0.12 13.3 7.9 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|449068061|ref|YP_007435143.1| - 0.00032 19.8 0.0 0.85 8.5 0.0 3.2 4 0 0 4 4 4 2 Molybdopterin oxidoreductase TAT_signal PF10518.9 gi|449068061|ref|YP_007435143.1| - 0.012 15.4 0.2 0.026 14.4 0.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.16 gi|449068061|ref|YP_007435143.1| - 0.19 11.7 0.3 0.39 10.8 0.3 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain TrmB PF01978.19 gi|449068062|ref|YP_007435144.1| - 0.00099 19.0 0.0 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449068062|ref|YP_007435144.1| - 0.0077 16.1 0.0 0.019 14.8 0.0 1.7 2 0 0 2 2 2 1 MarR family HVSL PF09749.9 gi|449068062|ref|YP_007435144.1| - 0.08 12.4 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein HTH_Crp_2 PF13545.6 gi|449068062|ref|YP_007435144.1| - 0.098 12.6 0.0 0.3 11.1 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2999 PF11212.8 gi|449068063|ref|YP_007435145.1| - 0.07 13.4 0.1 2.7 8.3 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2999) TPR_2 PF07719.17 gi|449068064|ref|YP_007435146.1| - 5.9e-19 66.6 13.1 0.017 15.2 0.1 7.1 6 1 1 7 7 7 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|449068064|ref|YP_007435146.1| - 9.5e-18 64.5 0.3 9.6e-10 38.8 0.0 4.0 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|449068064|ref|YP_007435146.1| - 2.3e-17 63.3 0.0 1.1e-06 29.2 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|449068064|ref|YP_007435146.1| - 3.7e-16 59.1 7.5 7.2e-05 22.9 0.2 4.0 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|449068064|ref|YP_007435146.1| - 1.1e-13 50.6 8.8 0.023 14.4 1.0 5.8 4 2 2 6 6 6 4 TPR repeat TPR_8 PF13181.6 gi|449068064|ref|YP_007435146.1| - 1.7e-11 43.3 9.8 0.012 15.8 0.0 6.5 6 1 0 6 6 6 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|449068064|ref|YP_007435146.1| - 4.3e-09 36.4 0.3 0.031 15.1 0.1 5.4 2 1 3 6 6 6 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|449068064|ref|YP_007435146.1| - 4.6e-09 35.7 14.7 0.51 10.3 0.2 6.4 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_9 PF13371.6 gi|449068064|ref|YP_007435146.1| - 5.1e-09 36.2 0.0 5.4e-05 23.3 0.0 3.8 2 1 1 3 3 3 2 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|449068064|ref|YP_007435146.1| - 1e-05 25.5 7.2 0.0018 18.3 3.4 2.9 1 1 2 3 3 3 2 Putative TPR-like repeat TPR_12 PF13424.6 gi|449068064|ref|YP_007435146.1| - 2.1e-05 24.7 8.9 2.1 8.7 0.3 5.8 3 3 1 4 4 4 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|449068064|ref|YP_007435146.1| - 3.5e-05 24.2 6.6 3.4 8.5 0.0 6.4 7 0 0 7 7 7 1 Tetratricopeptide repeat ChAPs PF09295.10 gi|449068064|ref|YP_007435146.1| - 3.9e-05 22.8 0.2 0.0067 15.5 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) NARP1 PF12569.8 gi|449068064|ref|YP_007435146.1| - 6.2e-05 22.1 1.5 0.0023 16.9 0.5 2.3 1 1 1 2 2 2 2 NMDA receptor-regulated protein 1 TPR_20 PF14561.6 gi|449068064|ref|YP_007435146.1| - 0.00011 22.5 0.3 1.8 8.9 0.0 3.9 2 1 3 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|449068064|ref|YP_007435146.1| - 0.00014 22.0 15.1 1.5 9.4 0.0 6.7 7 1 0 7 7 6 1 Tetratricopeptide repeat TPR_15 PF13429.6 gi|449068064|ref|YP_007435146.1| - 0.00014 21.2 0.0 3.4 6.8 0.0 4.2 2 1 2 5 5 5 1 Tetratricopeptide repeat SHNi-TPR PF10516.9 gi|449068064|ref|YP_007435146.1| - 0.00039 19.8 0.3 4 7.0 0.0 4.2 4 0 0 4 4 4 1 SHNi-TPR TPR_MalT PF17874.1 gi|449068064|ref|YP_007435146.1| - 0.0059 16.0 0.1 14 4.9 0.0 3.8 2 1 2 4 4 4 0 MalT-like TPR region YfdX PF10938.8 gi|449068064|ref|YP_007435146.1| - 0.0064 16.4 0.0 8.4 6.3 0.0 3.4 2 1 0 2 2 2 0 YfdX protein DUF3856 PF12968.7 gi|449068064|ref|YP_007435146.1| - 0.014 15.4 0.3 0.43 10.6 0.0 2.7 3 0 0 3 3 2 0 Domain of Unknown Function (DUF3856) DUF4363 PF14276.6 gi|449068064|ref|YP_007435146.1| - 0.038 14.1 3.6 5.8 7.1 0.0 4.0 3 1 0 4 4 4 0 Domain of unknown function (DUF4363) TPR_21 PF09976.9 gi|449068064|ref|YP_007435146.1| - 0.041 13.6 0.1 0.29 10.8 0.1 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat-like domain BTAD PF03704.17 gi|449068064|ref|YP_007435146.1| - 0.072 13.5 0.1 3.1 8.2 0.0 2.7 3 0 0 3 3 3 0 Bacterial transcriptional activator domain Fer4_7 PF12838.7 gi|449068065|ref|YP_007435147.1| - 6.8e-10 39.4 12.1 0.00077 20.0 0.4 3.6 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449068065|ref|YP_007435147.1| - 1.3e-08 34.8 15.3 0.00028 20.9 0.3 3.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449068065|ref|YP_007435147.1| - 2.6e-08 33.3 30.0 6.3e-05 22.6 4.1 4.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|449068065|ref|YP_007435147.1| - 4e-08 33.0 26.6 0.00049 20.0 5.3 4.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449068065|ref|YP_007435147.1| - 1.7e-07 31.2 10.4 1.3e-06 28.4 4.9 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449068065|ref|YP_007435147.1| - 9.9e-06 25.6 4.3 9.9e-06 25.6 4.3 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449068065|ref|YP_007435147.1| - 0.00013 21.8 27.2 0.0019 18.2 3.5 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|449068065|ref|YP_007435147.1| - 0.005 17.3 15.8 0.34 11.4 1.3 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|449068065|ref|YP_007435147.1| - 0.019 15.7 13.6 2.5 8.9 8.8 3.5 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|449068065|ref|YP_007435147.1| - 0.025 15.1 2.7 0.025 15.1 2.7 4.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|449068065|ref|YP_007435147.1| - 0.094 13.3 17.5 1.6 9.3 0.3 4.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain CRAL_TRIO PF00650.20 gi|449068065|ref|YP_007435147.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 CRAL/TRIO domain Fer4_13 PF13370.6 gi|449068065|ref|YP_007435147.1| - 0.17 12.4 11.2 1.7 9.2 0.6 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|449068065|ref|YP_007435147.1| - 0.33 11.9 13.8 0.78 10.7 3.4 3.7 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain DUF678 PF05077.12 gi|449068065|ref|YP_007435147.1| - 3.4 7.8 7.5 29 4.9 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF678) HAD_2 PF13419.6 gi|449068066|ref|YP_007435148.1| - 0.00059 20.0 0.0 0.002 18.3 0.0 1.7 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF2299 PF10061.9 gi|449068067|ref|YP_007435149.1| - 2.1e-34 118.3 1.1 2.8e-34 117.8 1.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) Amidoligase_2 PF12224.8 gi|449068067|ref|YP_007435149.1| - 0.073 12.7 0.0 0.085 12.5 0.0 1.1 1 0 0 1 1 1 0 Putative amidoligase enzyme NrfD PF03916.14 gi|449068068|ref|YP_007435150.1| - 2.1e-12 47.3 30.1 7.6e-12 45.5 25.6 2.2 2 0 0 2 2 2 2 Polysulphide reductase, NrfD DUF1361 PF07099.11 gi|449068068|ref|YP_007435150.1| - 0.01 15.9 0.1 0.01 15.9 0.1 2.9 2 2 1 3 3 3 1 Protein of unknown function (DUF1361) DmsC PF04976.12 gi|449068068|ref|YP_007435150.1| - 0.052 13.0 23.0 0.015 14.8 19.6 1.8 2 1 0 2 2 2 0 DMSO reductase anchor subunit (DmsC) MFS_1 PF07690.16 gi|449068069|ref|YP_007435151.1| - 8.5e-17 61.1 38.9 8.5e-17 61.1 38.9 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449068069|ref|YP_007435151.1| - 9.3e-14 51.1 27.4 1.8e-13 50.2 27.3 1.4 1 1 0 1 1 1 1 Sugar (and other) transporter ISK_Channel PF02060.15 gi|449068069|ref|YP_007435151.1| - 0.2 11.4 0.1 0.2 11.4 0.1 2.3 3 0 0 3 3 3 0 Slow voltage-gated potassium channel MFS_1 PF07690.16 gi|449068070|ref|YP_007435152.1| - 1.4e-42 145.9 69.7 1.5e-27 96.5 19.1 3.4 1 1 2 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449068070|ref|YP_007435152.1| - 1.5e-06 27.4 35.6 1.5e-05 24.1 12.2 3.3 3 0 0 3 3 3 2 Sugar (and other) transporter PUCC PF03209.15 gi|449068070|ref|YP_007435152.1| - 0.00011 21.4 3.2 0.00011 21.4 3.2 2.9 3 1 0 3 3 3 1 PUCC protein MFS_3 PF05977.13 gi|449068070|ref|YP_007435152.1| - 0.00043 18.8 1.7 0.00043 18.8 1.7 2.0 2 0 0 2 2 2 1 Transmembrane secretion effector MarR PF01047.22 gi|449068071|ref|YP_007435153.1| - 1.9e-11 43.7 0.0 3.2e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|449068071|ref|YP_007435153.1| - 1.1e-09 38.6 0.1 1.7e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|449068071|ref|YP_007435153.1| - 1.4e-08 34.5 0.0 2.2e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|449068071|ref|YP_007435153.1| - 0.00068 19.8 0.4 0.0056 16.8 0.0 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|449068071|ref|YP_007435153.1| - 0.0012 18.7 0.1 0.0023 17.7 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|449068071|ref|YP_007435153.1| - 0.0017 18.2 0.1 0.0031 17.3 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.19 gi|449068071|ref|YP_007435153.1| - 0.011 16.0 0.0 0.029 14.6 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|449068071|ref|YP_007435153.1| - 0.017 14.7 0.1 0.11 12.0 0.0 2.4 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding MFS_1 PF07690.16 gi|449068072|ref|YP_007435154.1| - 4.5e-47 160.7 42.5 1.5e-30 106.3 20.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|449068072|ref|YP_007435154.1| - 1.4e-08 33.8 30.5 2.4e-06 26.4 16.7 2.3 2 1 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|449068072|ref|YP_007435154.1| - 1.2e-07 31.0 26.3 0.00014 20.9 13.2 2.1 1 1 1 2 2 2 2 MFS_1 like family Flp_Fap PF04964.14 gi|449068072|ref|YP_007435154.1| - 5.8 6.8 6.9 7.6 6.5 0.0 3.2 3 0 0 3 3 3 0 Flp/Fap pilin component HTH_24 PF13412.6 gi|449068073|ref|YP_007435155.1| - 4.7e-19 67.7 4.0 9.2e-14 50.7 0.4 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|449068073|ref|YP_007435155.1| - 6.6e-12 45.1 0.8 2.4e-08 33.7 0.1 2.2 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|449068073|ref|YP_007435155.1| - 1.9e-06 27.7 0.0 0.0033 17.3 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_Crp_2 PF13545.6 gi|449068073|ref|YP_007435155.1| - 0.00019 21.3 0.0 0.0055 16.7 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|449068073|ref|YP_007435155.1| - 0.00046 20.0 0.0 0.024 14.5 0.0 2.2 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|449068073|ref|YP_007435155.1| - 0.00056 19.7 0.7 0.59 10.0 0.1 3.0 3 0 0 3 3 3 2 TFIIE alpha subunit HTH_5 PF01022.20 gi|449068073|ref|YP_007435155.1| - 0.0009 19.1 0.2 0.61 10.0 0.0 2.6 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|449068073|ref|YP_007435155.1| - 0.0015 18.3 0.1 0.56 10.1 0.0 2.7 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|449068073|ref|YP_007435155.1| - 0.0043 17.1 0.1 0.072 13.1 0.0 2.8 3 0 0 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.6 gi|449068073|ref|YP_007435155.1| - 0.041 14.0 0.0 5.3 7.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|449068073|ref|YP_007435155.1| - 0.064 13.3 0.0 3.9 7.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|449068073|ref|YP_007435155.1| - 0.076 13.2 0.0 4.2 7.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|449068073|ref|YP_007435155.1| - 0.12 12.2 0.1 3.5 7.6 0.0 2.5 3 0 0 3 3 3 0 Homeodomain-like domain HEPPP_synt_1 PF07307.11 gi|449068073|ref|YP_007435155.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 HTH_38 PF13936.6 gi|449068073|ref|YP_007435155.1| - 0.12 12.1 0.1 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|449068073|ref|YP_007435155.1| - 0.14 12.1 0.0 9.9 6.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|449068075|ref|YP_007435157.1| - 2.9e-19 68.6 0.4 8.9e-19 67.0 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|449068075|ref|YP_007435157.1| - 3.2e-05 23.3 0.0 6.6e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Spo0A_C PF08769.11 gi|449068075|ref|YP_007435157.1| - 0.019 15.0 0.4 0.12 12.5 0.0 2.4 3 0 0 3 3 3 0 Sporulation initiation factor Spo0A C terminal DUF2779 PF11074.8 gi|449068075|ref|YP_007435157.1| - 0.042 14.3 0.5 0.12 12.8 0.5 1.9 1 1 0 1 1 1 0 Domain of unknown function(DUF2779) ATP-synt_E_2 PF08112.11 gi|449068075|ref|YP_007435157.1| - 0.23 11.8 3.6 0.18 12.1 1.5 1.9 2 0 0 2 2 2 0 ATP synthase epsilon subunit Bac_RepA_C PF18008.1 gi|449068075|ref|YP_007435157.1| - 2.1 8.8 7.1 35 4.8 0.1 3.5 2 1 2 4 4 4 0 Replication initiator protein A C-terminal domain Ald_Xan_dh_C2 PF02738.18 gi|449068076|ref|YP_007435158.1| - 2.5e-150 501.6 0.0 3.4e-150 501.1 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449068076|ref|YP_007435158.1| - 4.8e-15 55.9 0.3 1.2e-13 51.4 0.3 2.5 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ATP-synt_DE PF00401.20 gi|449068076|ref|YP_007435158.1| - 0.093 13.0 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MFS_1 PF07690.16 gi|449068077|ref|YP_007435159.1| - 7.9e-18 64.5 63.4 5.7e-11 41.9 40.5 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily TolA_bind_tri PF16331.5 gi|449068078|ref|YP_007435160.1| - 7.3e-07 29.2 25.3 0.042 13.9 1.0 4.5 2 1 3 5 5 5 4 TolA binding protein trimerisation MbeD_MobD PF04899.12 gi|449068078|ref|YP_007435160.1| - 1.1e-06 28.6 10.9 0.02 15.0 0.0 5.4 1 1 6 7 7 7 1 MbeD/MobD like TMF_DNA_bd PF12329.8 gi|449068078|ref|YP_007435160.1| - 8.1e-06 25.7 58.7 0.0041 17.1 3.8 5.9 1 1 5 6 6 6 2 TATA element modulatory factor 1 DNA binding TelA PF05816.11 gi|449068078|ref|YP_007435160.1| - 1.6e-05 24.2 35.3 0.0059 15.7 21.0 3.2 1 1 1 2 2 2 2 Toxic anion resistance protein (TelA) TetR_C_24 PF17932.1 gi|449068078|ref|YP_007435160.1| - 0.00022 21.4 24.7 1.2 9.5 0.3 6.5 1 1 6 7 7 7 1 Tetracyclin repressor-like, C-terminal domain Syntaxin_2 PF14523.6 gi|449068078|ref|YP_007435160.1| - 0.00076 19.8 36.6 1.2 9.5 7.7 5.4 1 1 4 5 5 5 1 Syntaxin-like protein Sigma70_r4 PF04545.16 gi|449068078|ref|YP_007435160.1| - 0.0016 17.9 15.3 1.9 8.1 0.4 5.6 2 1 4 6 6 6 1 Sigma-70, region 4 Fib_alpha PF08702.10 gi|449068078|ref|YP_007435160.1| - 0.0039 17.4 36.3 0.5 10.5 17.3 3.0 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|449068078|ref|YP_007435160.1| - 0.0091 14.9 47.0 0.82 8.5 25.3 2.6 1 1 1 2 2 2 2 Spc7 kinetochore protein Mt_ATP-synt_B PF05405.14 gi|449068078|ref|YP_007435160.1| - 0.014 15.0 3.9 0.014 15.0 3.9 3.4 1 1 2 3 3 3 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) BLOC1_2 PF10046.9 gi|449068078|ref|YP_007435160.1| - 0.025 14.9 10.0 0.025 14.9 10.0 4.2 1 1 3 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TACC_C PF05010.14 gi|449068078|ref|YP_007435160.1| - 0.031 14.1 42.0 0.48 10.2 14.9 3.0 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal YaiA PF16362.5 gi|449068078|ref|YP_007435160.1| - 0.032 14.3 5.6 1e+02 3.1 0.1 4.9 1 1 5 6 6 6 0 YaiA protein ARGLU PF15346.6 gi|449068078|ref|YP_007435160.1| - 0.042 13.7 57.4 0.26 11.2 15.1 3.4 1 1 2 3 3 3 0 Arginine and glutamate-rich 1 Seryl_tRNA_N PF02403.22 gi|449068078|ref|YP_007435160.1| - 0.057 13.6 47.6 0.54 10.5 16.0 3.7 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.6 gi|449068078|ref|YP_007435160.1| - 0.08 13.3 54.4 0.93 9.9 14.9 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) KASH_CCD PF14662.6 gi|449068078|ref|YP_007435160.1| - 0.11 12.3 48.1 0.12 12.2 19.5 2.3 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF1759 PF03564.15 gi|449068078|ref|YP_007435160.1| - 0.14 12.1 24.4 0.74 9.7 0.5 4.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1759) DUF2935 PF11155.8 gi|449068078|ref|YP_007435160.1| - 0.17 12.2 22.5 0.9 9.9 4.5 3.6 1 1 1 2 2 1 0 Domain of unknown function (DUF2935) EzrA PF06160.12 gi|449068078|ref|YP_007435160.1| - 0.18 10.0 42.7 1.2 7.3 15.1 3.0 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA TMP_2 PF06791.13 gi|449068078|ref|YP_007435160.1| - 0.21 11.3 17.1 2.4 7.8 6.3 3.3 1 1 3 4 4 4 0 Prophage tail length tape measure protein Vps39_1 PF10366.9 gi|449068078|ref|YP_007435160.1| - 0.25 11.6 13.7 1.3 9.3 1.7 2.9 2 1 1 3 3 2 0 Vacuolar sorting protein 39 domain 1 Filament PF00038.21 gi|449068078|ref|YP_007435160.1| - 0.28 10.7 37.9 0.46 10.0 37.9 1.2 1 0 0 1 1 1 0 Intermediate filament protein DUF948 PF06103.11 gi|449068078|ref|YP_007435160.1| - 0.3 11.3 30.0 0.28 11.5 4.7 5.4 2 1 3 5 5 4 0 Bacterial protein of unknown function (DUF948) ATG16 PF08614.11 gi|449068078|ref|YP_007435160.1| - 0.37 11.0 42.0 2 8.6 9.3 3.4 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) DUF812 PF05667.11 gi|449068078|ref|YP_007435160.1| - 0.44 9.4 47.7 1.7 7.5 47.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) NanE PF04131.14 gi|449068078|ref|YP_007435160.1| - 0.53 9.5 10.8 0.78 8.9 0.9 3.3 1 1 2 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase HAUS-augmin3 PF14932.6 gi|449068078|ref|YP_007435160.1| - 0.53 9.8 36.8 2.4 7.7 15.0 2.7 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 3 CDPS PF16715.5 gi|449068078|ref|YP_007435160.1| - 0.66 9.6 15.8 1.5 8.4 6.7 2.4 1 1 2 3 3 3 0 Cyclodipeptide synthase Y_phosphatase3 PF13350.6 gi|449068078|ref|YP_007435160.1| - 0.7 9.8 11.7 2.5e+02 1.5 11.7 2.9 1 1 0 1 1 1 0 Tyrosine phosphatase family AAA_13 PF13166.6 gi|449068078|ref|YP_007435160.1| - 0.72 8.4 42.4 2 6.9 10.6 2.4 1 1 1 2 2 2 0 AAA domain DUF148 PF02520.17 gi|449068078|ref|YP_007435160.1| - 1.1 9.4 36.6 0.3 11.2 3.3 4.2 1 1 3 4 4 4 0 Domain of unknown function DUF148 CcdA PF07362.12 gi|449068078|ref|YP_007435160.1| - 1.3 9.6 30.5 32 5.0 0.6 6.6 1 1 5 6 6 6 0 Post-segregation antitoxin CcdA Pox_Rap94 PF03294.14 gi|449068078|ref|YP_007435160.1| - 1.3 7.0 27.5 0.21 9.6 11.7 2.3 1 1 1 2 2 2 0 RNA polymerase-associated transcription specificity factor, Rap94 TusA PF01206.17 gi|449068078|ref|YP_007435160.1| - 1.4 8.8 0.0 1.4 8.8 0.0 4.0 2 1 3 5 5 5 0 Sulfurtransferase TusA T2SSF PF00482.23 gi|449068078|ref|YP_007435160.1| - 1.6 8.7 5.2 0.49 10.4 0.7 2.3 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F YccJ PF13993.6 gi|449068078|ref|YP_007435160.1| - 1.7 9.0 19.3 34 4.9 0.5 5.4 1 1 5 6 6 6 0 YccJ-like protein MCPsignal PF00015.21 gi|449068078|ref|YP_007435160.1| - 1.8 8.3 31.9 13 5.6 9.6 3.5 1 1 3 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Fez1 PF06818.15 gi|449068078|ref|YP_007435160.1| - 2 8.8 37.5 12 6.2 30.6 2.4 1 1 1 2 2 2 0 Fez1 SpecificRecomb PF10136.9 gi|449068078|ref|YP_007435160.1| - 2.5 6.3 17.9 6.3 5.0 12.2 2.0 1 1 1 2 2 2 0 Site-specific recombinase Corona_S2 PF01601.16 gi|449068078|ref|YP_007435160.1| - 2.5 6.5 8.0 18 3.7 0.3 2.9 1 1 3 4 4 4 0 Coronavirus S2 glycoprotein DUF4201 PF13870.6 gi|449068078|ref|YP_007435160.1| - 4 7.1 47.6 9.1 6.0 16.4 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) ALMT PF11744.8 gi|449068078|ref|YP_007435160.1| - 4.6 6.0 23.1 7.1 5.3 23.1 1.4 1 0 0 1 1 1 0 Aluminium activated malate transporter HOOK PF05622.12 gi|449068078|ref|YP_007435160.1| - 4.6 5.3 41.7 2e+02 -0.1 41.7 2.2 1 1 0 1 1 1 0 HOOK protein TPR_MLP1_2 PF07926.12 gi|449068078|ref|YP_007435160.1| - 4.9 7.2 45.2 4.3 7.4 16.6 3.5 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein MscS_porin PF12795.7 gi|449068078|ref|YP_007435160.1| - 5 6.6 38.6 3.3 7.2 11.0 3.1 1 1 1 3 3 3 0 Mechanosensitive ion channel porin domain DUF4473 PF14747.6 gi|449068078|ref|YP_007435160.1| - 5.4 7.6 28.0 3.6 8.2 4.1 4.6 1 1 4 5 5 5 0 Domain of unknown function (DUF4473) MCD_N PF17408.2 gi|449068078|ref|YP_007435160.1| - 5.7 7.1 17.6 10 6.4 2.3 3.7 2 1 2 4 4 3 0 Malonyl-CoA decarboxylase N-terminal domain SfsA PF03749.13 gi|449068078|ref|YP_007435160.1| - 6.8 6.6 19.0 78 3.2 1.3 5.9 2 1 4 6 6 6 0 Sugar fermentation stimulation protein RE domain SAPIS-gp6 PF16722.5 gi|449068078|ref|YP_007435160.1| - 7.1 7.1 34.1 40 4.7 0.4 6.8 2 1 5 7 7 7 0 Pathogenicity island protein gp6 in Staphylococcus DUF2584 PF10763.9 gi|449068078|ref|YP_007435160.1| - 7.1 6.9 26.4 6.9 6.9 0.6 5.4 1 1 5 6 6 6 0 Protein of unknown function (DUF2584) Lebercilin PF15619.6 gi|449068078|ref|YP_007435160.1| - 7.8 6.1 47.2 3.8 7.1 20.1 3.4 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease ABC_tran PF00005.27 gi|449068079|ref|YP_007435161.1| - 3.4e-29 102.1 0.0 6.2e-29 101.3 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|449068079|ref|YP_007435161.1| - 1.9e-10 41.1 0.1 7.4e-05 22.7 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449068079|ref|YP_007435161.1| - 1.5e-07 31.1 2.5 1.1e-06 28.3 2.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|449068079|ref|YP_007435161.1| - 5.2e-05 23.2 1.0 0.008 16.1 0.0 2.5 3 0 0 3 3 3 1 RsgA GTPase AAA_29 PF13555.6 gi|449068079|ref|YP_007435161.1| - 0.00012 21.8 0.1 0.00024 20.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|449068079|ref|YP_007435161.1| - 0.00026 19.9 0.4 0.065 12.0 0.0 2.5 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|449068079|ref|YP_007435161.1| - 0.00095 19.7 1.0 0.0032 18.0 1.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|449068079|ref|YP_007435161.1| - 0.0013 18.6 1.6 0.13 12.0 2.6 2.1 1 1 1 2 2 2 1 AAA ATPase domain TsaE PF02367.17 gi|449068079|ref|YP_007435161.1| - 0.031 14.3 0.0 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|449068079|ref|YP_007435161.1| - 0.049 13.4 0.0 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|449068079|ref|YP_007435161.1| - 0.056 12.4 1.1 0.14 11.1 1.1 1.8 1 1 0 1 1 1 0 AAA-like domain AAA_16 PF13191.6 gi|449068079|ref|YP_007435161.1| - 0.088 13.2 0.0 0.11 12.9 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|449068079|ref|YP_007435161.1| - 0.1 12.7 0.2 0.16 12.1 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|449068079|ref|YP_007435161.1| - 0.15 11.6 0.2 0.62 9.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.16 gi|449068080|ref|YP_007435162.1| - 2.9e-30 105.4 35.8 4.1e-30 104.8 35.8 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_4 PF13407.6 gi|449068081|ref|YP_007435163.1| - 3.6e-46 157.8 0.1 6.1e-46 157.1 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 gi|449068081|ref|YP_007435163.1| - 6.5e-05 22.5 0.0 0.0001 21.8 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family ABC_membrane PF00664.23 gi|449068082|ref|YP_007435164.1| - 4.1e-46 157.9 10.2 6e-46 157.3 10.2 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|449068082|ref|YP_007435164.1| - 1.7e-34 119.3 0.0 3.6e-34 118.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.11 gi|449068082|ref|YP_007435164.1| - 5.6e-30 103.8 0.4 2.9e-29 101.5 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1854) SMC_N PF02463.19 gi|449068082|ref|YP_007435164.1| - 7e-06 25.6 0.8 0.0023 17.4 0.0 2.5 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_membrane_3 PF13748.6 gi|449068082|ref|YP_007435164.1| - 1.9e-05 24.0 3.9 1.9e-05 24.0 3.9 2.3 2 0 0 2 2 2 1 ABC transporter transmembrane region AAA_21 PF13304.6 gi|449068082|ref|YP_007435164.1| - 6.6e-05 22.9 0.7 0.35 10.6 0.0 2.8 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|449068082|ref|YP_007435164.1| - 0.0022 18.2 0.5 0.066 13.5 0.2 3.3 2 1 1 3 3 3 1 AAA domain DUF87 PF01935.17 gi|449068082|ref|YP_007435164.1| - 0.0025 18.0 0.1 0.012 15.8 0.1 2.2 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_29 PF13555.6 gi|449068082|ref|YP_007435164.1| - 0.0038 16.9 0.1 0.0097 15.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|449068082|ref|YP_007435164.1| - 0.0053 16.5 3.0 0.018 14.8 2.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|449068082|ref|YP_007435164.1| - 0.0067 16.9 0.5 1 9.8 0.1 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|449068082|ref|YP_007435164.1| - 0.012 14.6 1.2 0.55 9.1 0.1 2.8 3 0 0 3 3 3 0 AAA-like domain RNA_helicase PF00910.22 gi|449068082|ref|YP_007435164.1| - 0.027 14.9 0.3 0.77 10.2 0.0 2.6 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|449068082|ref|YP_007435164.1| - 0.029 14.1 2.4 0.044 13.5 0.9 2.2 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|449068082|ref|YP_007435164.1| - 0.029 14.7 0.0 0.38 11.1 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|449068082|ref|YP_007435164.1| - 0.031 14.8 0.0 0.091 13.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|449068082|ref|YP_007435164.1| - 0.062 13.4 0.1 0.19 11.8 0.1 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|449068082|ref|YP_007435164.1| - 0.064 13.1 0.1 0.39 10.6 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase AAA_5 PF07728.14 gi|449068082|ref|YP_007435164.1| - 0.11 12.5 0.0 0.66 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Roc PF08477.13 gi|449068082|ref|YP_007435164.1| - 0.12 12.6 0.1 0.83 9.9 0.1 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase VirB3 PF05101.13 gi|449068082|ref|YP_007435164.1| - 0.25 11.6 1.6 1.9 8.8 0.9 2.4 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein Amidohydro_2 PF04909.14 gi|449068083|ref|YP_007435165.1| - 1e-35 123.9 0.6 1.9e-35 123.0 0.6 1.4 1 1 0 1 1 1 1 Amidohydrolase Sulfotransfer_3 PF13469.6 gi|449068083|ref|YP_007435165.1| - 0.061 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Sulfotransferase family CARD PF00619.21 gi|449068084|ref|YP_007435166.1| - 0.0011 18.9 0.2 0.0015 18.6 0.2 1.2 1 0 0 1 1 1 1 Caspase recruitment domain HP1451_C PF18472.1 gi|449068084|ref|YP_007435166.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 HP1451 C-terminal domain ADH_N PF08240.12 gi|449068085|ref|YP_007435167.1| - 3.7e-30 104.0 0.7 9.7e-30 102.7 0.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449068085|ref|YP_007435167.1| - 2e-26 92.5 0.2 3.2e-26 91.8 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449068085|ref|YP_007435167.1| - 1.1e-12 49.1 0.0 2.2e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|449068085|ref|YP_007435167.1| - 0.00018 21.1 0.3 0.00028 20.4 0.3 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|449068085|ref|YP_007435167.1| - 0.0016 18.7 0.5 0.0035 17.6 0.5 1.6 1 0 0 1 1 1 1 TrkA-N domain DapB_N PF01113.20 gi|449068085|ref|YP_007435167.1| - 0.039 14.1 0.9 0.073 13.2 0.9 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Methyltransf_25 PF13649.6 gi|449068085|ref|YP_007435167.1| - 0.045 14.5 0.0 0.11 13.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CoA_binding PF02629.19 gi|449068085|ref|YP_007435167.1| - 0.052 14.2 2.6 1.4 9.6 2.4 2.5 2 1 0 2 2 2 0 CoA binding domain Methyltransf_31 PF13847.6 gi|449068085|ref|YP_007435167.1| - 0.08 12.7 0.2 0.18 11.6 0.2 1.4 1 1 0 1 1 1 0 Methyltransferase domain MFS_1 PF07690.16 gi|449068086|ref|YP_007435168.1| - 4e-24 85.2 39.5 6.3e-24 84.6 39.5 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|449068086|ref|YP_007435168.1| - 4.5e-13 48.9 29.7 9.8e-07 28.0 6.3 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter DUF3792 PF12670.7 gi|449068086|ref|YP_007435168.1| - 0.0031 17.7 16.4 0.0031 17.7 16.4 4.7 3 1 2 5 5 5 1 Protein of unknown function (DUF3792) Peptidase_S58 PF03576.14 gi|449068087|ref|YP_007435169.1| - 8e-32 110.9 2.2 1.1e-31 110.5 2.2 1.0 1 0 0 1 1 1 1 Peptidase family S58 MFS_1 PF07690.16 gi|449068088|ref|YP_007435170.1| - 7.8e-22 77.7 68.9 2.3e-19 69.5 38.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily adh_short_C2 PF13561.6 gi|449068089|ref|YP_007435171.1| - 1.9e-68 230.5 0.1 2.2e-68 230.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|449068089|ref|YP_007435171.1| - 2.8e-48 164.0 0.8 3.3e-48 163.7 0.8 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|449068089|ref|YP_007435171.1| - 4.5e-13 49.5 0.1 6.5e-13 49.0 0.1 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|449068089|ref|YP_007435171.1| - 0.00032 20.2 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 gi|449068089|ref|YP_007435171.1| - 0.0004 20.3 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|449068089|ref|YP_007435171.1| - 0.0015 19.2 0.0 0.0027 18.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THF_DHG_CYH_C PF02882.19 gi|449068089|ref|YP_007435171.1| - 0.0032 16.8 0.0 0.013 14.9 0.0 1.8 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 gi|449068089|ref|YP_007435171.1| - 0.023 14.2 0.9 0.29 10.5 0.9 2.2 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Peptidase_M20 PF01546.28 gi|449068090|ref|YP_007435172.1| - 4.4e-37 127.8 0.0 2.3e-36 125.4 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|449068090|ref|YP_007435172.1| - 9.1e-21 73.8 0.0 3.8e-20 71.8 0.0 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|449068090|ref|YP_007435172.1| - 0.035 13.8 0.0 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 Peptidase family M28 Peptidase_M20 PF01546.28 gi|449068091|ref|YP_007435173.1| - 1.2e-32 113.3 0.0 1.5e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|449068091|ref|YP_007435173.1| - 4.2e-07 29.9 0.0 7.7e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 gi|449068091|ref|YP_007435173.1| - 5.8e-06 26.2 0.0 1.2e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|449068091|ref|YP_007435173.1| - 0.0042 16.1 0.1 0.95 8.4 0.1 2.5 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase MFS_1 PF07690.16 gi|449068092|ref|YP_007435174.1| - 8.7e-28 97.3 44.3 8.7e-28 97.3 44.3 1.3 2 0 0 2 2 2 1 Major Facilitator Superfamily Arginase PF00491.21 gi|449068093|ref|YP_007435175.1| - 9.1e-78 261.6 0.0 1.1e-77 261.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF1640 PF07798.11 gi|449068094|ref|YP_007435176.1| - 4.9e-05 23.4 14.1 0.00023 21.3 14.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) FAM184 PF15665.5 gi|449068094|ref|YP_007435176.1| - 0.00047 20.0 9.3 0.00047 20.0 9.3 2.0 2 1 0 2 2 2 1 Family with sequence similarity 184, A and B ApoLp-III PF07464.11 gi|449068094|ref|YP_007435176.1| - 0.00093 19.3 2.3 0.002 18.2 2.3 1.7 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.18 gi|449068094|ref|YP_007435176.1| - 0.0071 16.2 1.3 0.013 15.4 1.3 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Tup_N PF08581.10 gi|449068094|ref|YP_007435176.1| - 0.0074 16.6 13.8 0.026 14.8 10.0 3.2 2 1 0 2 2 1 1 Tup N-terminal Prominin PF05478.11 gi|449068094|ref|YP_007435176.1| - 0.012 13.6 7.5 0.016 13.2 7.5 1.1 1 0 0 1 1 1 0 Prominin TPR_MLP1_2 PF07926.12 gi|449068094|ref|YP_007435176.1| - 0.012 15.7 2.2 0.03 14.4 2.2 1.7 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.12 gi|449068094|ref|YP_007435176.1| - 0.018 15.1 1.4 0.052 13.6 1.2 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus OmpH PF03938.14 gi|449068094|ref|YP_007435176.1| - 0.027 14.8 10.6 0.025 14.9 8.3 2.1 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) Synapsin PF02078.16 gi|449068094|ref|YP_007435176.1| - 0.075 13.3 3.3 1 9.7 0.3 2.9 2 1 2 4 4 4 0 Synapsin, N-terminal domain Lectin_N PF03954.14 gi|449068094|ref|YP_007435176.1| - 0.12 12.1 1.1 0.25 11.1 1.1 1.5 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain MCPsignal PF00015.21 gi|449068094|ref|YP_007435176.1| - 0.13 12.1 0.4 0.31 10.8 0.4 1.6 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF883 PF05957.13 gi|449068094|ref|YP_007435176.1| - 0.13 12.9 0.5 0.77 10.4 0.5 2.2 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) AATF-Che1 PF13339.6 gi|449068094|ref|YP_007435176.1| - 0.16 12.7 5.7 0.2 12.3 4.5 1.7 1 1 0 2 2 1 0 Apoptosis antagonizing transcription factor Myb_DNA-bind_5 PF13873.6 gi|449068094|ref|YP_007435176.1| - 0.28 11.3 4.5 0.58 10.3 0.5 3.1 2 1 2 4 4 4 0 Myb/SANT-like DNA-binding domain DUF1664 PF07889.12 gi|449068094|ref|YP_007435176.1| - 0.3 11.1 13.3 0.13 12.3 4.3 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) AAA_11 PF13086.6 gi|449068094|ref|YP_007435176.1| - 0.32 10.7 5.3 0.56 10.0 5.3 1.4 1 0 0 1 1 1 0 AAA domain HIP1_clath_bdg PF16515.5 gi|449068094|ref|YP_007435176.1| - 0.35 11.5 10.9 0.22 12.1 1.9 2.9 2 1 1 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 FAM76 PF16046.5 gi|449068094|ref|YP_007435176.1| - 0.41 10.0 7.4 0.65 9.3 7.4 1.3 1 0 0 1 1 1 0 FAM76 protein DLP_helical PF18709.1 gi|449068094|ref|YP_007435176.1| - 0.54 9.4 14.0 0.6 9.3 4.1 2.2 1 1 1 2 2 2 0 Dynamin-like helical domain DUF2408 PF10303.9 gi|449068094|ref|YP_007435176.1| - 0.65 10.6 10.3 1.3 9.6 8.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Rootletin PF15035.6 gi|449068094|ref|YP_007435176.1| - 0.94 9.5 12.2 1.5 8.8 11.2 1.9 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TMF_DNA_bd PF12329.8 gi|449068094|ref|YP_007435176.1| - 1 9.4 10.8 9.3 6.3 1.5 3.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Sec2p PF06428.11 gi|449068094|ref|YP_007435176.1| - 1.1 9.3 11.1 1.9 8.5 0.7 3.6 2 1 2 4 4 4 0 GDP/GTP exchange factor Sec2p DUF919 PF06034.11 gi|449068094|ref|YP_007435176.1| - 1.2 9.0 13.6 3.6 7.5 2.1 3.8 1 1 2 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF919) Fzo_mitofusin PF04799.13 gi|449068094|ref|YP_007435176.1| - 1.3 8.6 7.8 5.5 6.5 0.5 2.7 1 1 2 3 3 3 0 fzo-like conserved region MutS_IV PF05190.18 gi|449068094|ref|YP_007435176.1| - 1.3 9.4 11.1 16 5.9 2.4 3.9 1 1 1 3 3 3 0 MutS family domain IV DUF1690 PF07956.11 gi|449068094|ref|YP_007435176.1| - 3.3 8.1 9.4 3 8.2 7.3 2.1 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) Rx_N PF18052.1 gi|449068094|ref|YP_007435176.1| - 3.5 8.0 9.9 12 6.2 0.9 3.3 1 1 1 3 3 3 0 Rx N-terminal domain zf-C4H2 PF10146.9 gi|449068094|ref|YP_007435176.1| - 6.7 7.0 11.5 18 5.6 11.2 2.0 1 1 0 1 1 1 0 Zinc finger-containing protein HTH_24 PF13412.6 gi|449068095|ref|YP_007435177.1| - 8.7e-15 54.0 1.9 1.3e-14 53.4 1.9 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|449068095|ref|YP_007435177.1| - 6.2e-13 48.4 0.2 9.2e-13 47.8 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|449068095|ref|YP_007435177.1| - 5.8e-12 45.4 0.0 1e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_5 PF01022.20 gi|449068095|ref|YP_007435177.1| - 1.5e-05 24.7 0.2 3.3e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|449068095|ref|YP_007435177.1| - 5.1e-05 23.1 0.1 0.00011 22.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|449068095|ref|YP_007435177.1| - 5.6e-05 23.1 0.0 9.5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|449068095|ref|YP_007435177.1| - 0.00023 21.0 0.1 0.00061 19.6 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|449068095|ref|YP_007435177.1| - 0.0014 19.0 0.1 0.0046 17.4 0.1 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|449068095|ref|YP_007435177.1| - 0.0016 18.3 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 MarR family RuvB_C PF05491.13 gi|449068095|ref|YP_007435177.1| - 0.0018 18.1 0.4 0.0051 16.7 0.3 1.8 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain DUF1759 PF03564.15 gi|449068095|ref|YP_007435177.1| - 0.0028 17.6 1.0 0.0047 16.9 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1759) HTH_WhiA PF02650.14 gi|449068095|ref|YP_007435177.1| - 0.003 17.9 2.1 0.0039 17.5 0.7 1.8 2 0 0 2 2 2 1 WhiA C-terminal HTH domain DUF2250 PF10007.9 gi|449068095|ref|YP_007435177.1| - 0.0077 16.3 1.9 0.11 12.6 0.3 2.6 2 1 1 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|449068095|ref|YP_007435177.1| - 0.011 15.6 0.2 0.021 14.7 0.2 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|449068095|ref|YP_007435177.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|449068095|ref|YP_007435177.1| - 0.015 15.2 2.0 0.019 14.9 0.2 2.0 2 0 0 2 2 2 0 HTH domain DDRGK PF09756.9 gi|449068095|ref|YP_007435177.1| - 0.015 14.9 0.3 0.025 14.2 0.3 1.3 1 0 0 1 1 1 0 DDRGK domain DUF3400 PF11880.8 gi|449068095|ref|YP_007435177.1| - 0.054 13.0 0.0 0.8 9.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) HTH_Crp_2 PF13545.6 gi|449068095|ref|YP_007435177.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|449068095|ref|YP_007435177.1| - 0.1 12.8 1.2 0.31 11.3 0.1 2.1 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_30 PF13556.6 gi|449068095|ref|YP_007435177.1| - 0.19 11.6 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Aminotran_3 PF00202.21 gi|449068096|ref|YP_007435178.1| - 8.2e-92 307.9 0.0 1e-91 307.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III EamA PF00892.20 gi|449068097|ref|YP_007435179.1| - 4.2e-33 114.4 31.2 1.8e-19 70.3 13.3 2.5 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|449068097|ref|YP_007435179.1| - 0.0015 17.9 14.7 0.0028 17.1 14.6 1.3 1 1 0 1 1 1 1 Triose-phosphate Transporter family B_solenoid_ydck PF18836.1 gi|449068097|ref|YP_007435179.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 Beta solenoid repeat from YDCK Vpu PF00558.19 gi|449068097|ref|YP_007435179.1| - 0.45 10.3 0.0 0.45 10.3 0.0 2.1 2 1 0 2 2 2 0 Vpu protein Rad50_zn_hook PF04423.14 gi|449068098|ref|YP_007435180.1| - 0.034 14.0 0.8 0.31 10.9 0.0 2.5 2 1 1 3 3 3 0 Rad50 zinc hook motif IF3_N PF05198.16 gi|449068098|ref|YP_007435180.1| - 0.056 13.7 0.1 0.088 13.1 0.1 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain PTE PF02126.18 gi|449068099|ref|YP_007435181.1| - 4.7e-82 275.8 0.0 5.3e-82 275.6 0.0 1.0 1 0 0 1 1 1 1 Phosphotriesterase family Gln-synt_C PF00120.24 gi|449068100|ref|YP_007435182.1| - 8.5e-107 357.1 0.0 1.6e-106 356.2 0.0 1.4 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|449068100|ref|YP_007435182.1| - 2.7e-10 40.0 0.0 4.5e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Amidohydro_2 PF04909.14 gi|449068101|ref|YP_007435183.1| - 2.5e-32 112.9 0.0 3.1e-32 112.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|449068101|ref|YP_007435183.1| - 0.00013 21.5 0.0 0.0022 17.4 0.0 2.1 2 0 0 2 2 2 1 TatD related DNase HpaB_N PF11794.8 gi|449068102|ref|YP_007435184.1| - 7.1e-91 304.6 0.1 9.8e-91 304.2 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|449068102|ref|YP_007435184.1| - 1.8e-64 216.6 0.1 2.4e-64 216.1 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|449068102|ref|YP_007435184.1| - 0.021 15.0 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|449068102|ref|YP_007435184.1| - 0.099 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Pyr_redox_2 PF07992.14 gi|449068103|ref|YP_007435185.1| - 1.6e-30 106.3 0.1 2.3e-30 105.9 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|449068103|ref|YP_007435185.1| - 3.2e-25 89.0 0.2 3.4e-22 79.1 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449068103|ref|YP_007435185.1| - 2.5e-13 50.4 0.1 3.9e-10 40.1 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|449068103|ref|YP_007435185.1| - 9.8e-10 38.1 0.2 1.1e-07 31.3 0.0 2.9 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|449068103|ref|YP_007435185.1| - 5.1e-08 32.0 0.0 0.0017 17.2 0.0 3.5 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|449068103|ref|YP_007435185.1| - 2.3e-05 24.5 0.2 0.0002 21.5 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|449068103|ref|YP_007435185.1| - 2.6e-05 24.0 1.9 0.036 13.6 0.2 3.6 2 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|449068103|ref|YP_007435185.1| - 0.00019 20.9 0.2 0.0011 18.4 0.0 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|449068103|ref|YP_007435185.1| - 0.00036 19.9 1.0 0.031 13.5 0.1 3.4 3 1 0 4 4 4 1 Thi4 family NAD_binding_7 PF13241.6 gi|449068103|ref|YP_007435185.1| - 0.0013 19.1 0.3 0.016 15.7 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FMO-like PF00743.19 gi|449068103|ref|YP_007435185.1| - 0.0024 16.4 0.2 0.011 14.1 0.0 1.9 1 1 1 2 2 2 1 Flavin-binding monooxygenase-like Spermine_synth PF01564.17 gi|449068103|ref|YP_007435185.1| - 0.04 13.3 0.2 0.25 10.8 0.1 2.0 2 0 0 2 2 2 0 Spermine/spermidine synthase domain FAD_binding_2 PF00890.24 gi|449068103|ref|YP_007435185.1| - 0.051 12.7 1.1 7.5 5.5 0.0 3.1 3 1 0 3 3 3 0 FAD binding domain ADH_N PF08240.12 gi|449068104|ref|YP_007435186.1| - 1.6e-29 102.0 1.2 1.6e-29 102.0 1.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449068104|ref|YP_007435186.1| - 1.7e-27 96.0 0.7 2.7e-27 95.3 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|449068104|ref|YP_007435186.1| - 8.9e-10 38.4 0.1 1.5e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|449068104|ref|YP_007435186.1| - 0.00012 23.1 0.0 0.00036 21.6 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|449068104|ref|YP_007435186.1| - 0.029 13.7 3.3 0.16 11.2 1.6 2.2 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|449068104|ref|YP_007435186.1| - 0.052 12.9 0.2 0.098 12.0 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|449068104|ref|YP_007435186.1| - 0.079 13.2 0.2 0.15 12.3 0.2 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain ThiF PF00899.21 gi|449068104|ref|YP_007435186.1| - 0.22 10.8 1.3 0.42 9.9 1.3 1.4 1 0 0 1 1 1 0 ThiF family AMP-binding_C_2 PF14535.6 gi|449068105|ref|YP_007435187.1| - 1.4e-13 50.9 0.0 2.4e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|449068105|ref|YP_007435187.1| - 0.00044 19.0 0.7 0.0013 17.4 0.7 1.6 1 1 0 1 1 1 1 AMP-binding enzyme Glyco_transf_11 PF01531.16 gi|449068105|ref|YP_007435187.1| - 0.084 12.1 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 11 Semialdhyde_dh PF01118.24 gi|449068106|ref|YP_007435188.1| - 1.3e-30 106.4 0.0 3.4e-30 105.0 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|449068106|ref|YP_007435188.1| - 1e-22 81.1 0.0 1.7e-22 80.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Gp_dh_C PF02800.20 gi|449068106|ref|YP_007435188.1| - 0.023 14.3 0.1 0.071 12.7 0.0 1.9 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|449068107|ref|YP_007435189.1| - 1.8e-104 349.7 0.0 2.2e-104 349.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449068107|ref|YP_007435189.1| - 6e-19 68.8 0.2 1.6e-18 67.5 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain FAA_hydrolase PF01557.18 gi|449068108|ref|YP_007435190.1| - 3.7e-57 193.5 0.0 4.6e-57 193.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactamase_B PF00753.27 gi|449068109|ref|YP_007435191.1| - 4.6e-25 88.8 0.7 1.7e-24 87.0 0.7 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily TauE PF01925.19 gi|449068110|ref|YP_007435192.1| - 6.1e-17 62.0 15.8 9.4e-17 61.4 15.8 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE FmdA_AmdA PF03069.15 gi|449068111|ref|YP_007435193.1| - 1.2e-69 234.9 0.0 3.5e-43 147.9 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family Acetyltransf_10 PF13673.7 gi|449068112|ref|YP_007435194.1| - 2.7e-16 59.7 0.0 3.4e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|449068112|ref|YP_007435194.1| - 2.8e-16 59.8 0.0 3.5e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|449068112|ref|YP_007435194.1| - 3.2e-16 59.5 0.0 4.5e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|449068112|ref|YP_007435194.1| - 1.5e-11 44.7 0.0 1.8e-11 44.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|449068112|ref|YP_007435194.1| - 7.7e-10 38.9 0.0 1.5e-09 38.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|449068112|ref|YP_007435194.1| - 2.5e-07 30.6 0.0 5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein AstA PF04958.12 gi|449068112|ref|YP_007435194.1| - 0.00079 18.1 0.0 0.0023 16.6 0.0 1.6 2 0 0 2 2 2 1 Arginine N-succinyltransferase beta subunit Acetyltransf_3 PF13302.7 gi|449068112|ref|YP_007435194.1| - 0.011 16.4 0.0 0.014 16.1 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|449068112|ref|YP_007435194.1| - 0.013 15.0 0.4 0.084 12.3 0.4 2.0 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_16 PF05301.11 gi|449068112|ref|YP_007435194.1| - 0.014 15.2 0.0 0.028 14.2 0.0 1.7 2 1 0 2 2 2 0 GNAT acetyltransferase, Mec-17 PanZ PF12568.8 gi|449068112|ref|YP_007435194.1| - 0.018 14.8 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|449068112|ref|YP_007435194.1| - 0.036 14.2 0.0 0.06 13.5 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase CRM1_repeat_2 PF18784.1 gi|449068112|ref|YP_007435194.1| - 0.096 12.3 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 CRM1 / Exportin repeat 2 malic PF00390.19 gi|449068113|ref|YP_007435195.1| - 2.3e-27 96.0 0.2 1.2e-24 87.1 0.2 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|449068113|ref|YP_007435195.1| - 3.7e-23 82.1 0.4 1.9e-22 79.8 0.4 1.9 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain AdoHcyase_NAD PF00670.21 gi|449068113|ref|YP_007435195.1| - 0.0022 18.1 0.0 0.0046 17.1 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Shikimate_DH PF01488.20 gi|449068113|ref|YP_007435195.1| - 0.0081 16.2 0.1 0.13 12.3 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DUF4031 PF13223.6 gi|449068113|ref|YP_007435195.1| - 0.01 16.1 0.0 0.021 15.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) AlaDh_PNT_C PF01262.21 gi|449068113|ref|YP_007435195.1| - 0.021 14.1 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.19 gi|449068113|ref|YP_007435195.1| - 0.05 12.3 0.0 0.083 11.6 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Peptidase_S9 PF00326.21 gi|449068114|ref|YP_007435196.1| - 3.2e-38 131.3 0.0 6.6e-38 130.3 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|449068114|ref|YP_007435196.1| - 1.5e-08 34.6 1.1 3.4e-06 26.9 0.6 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|449068114|ref|YP_007435196.1| - 1.6e-08 34.5 0.6 0.00022 20.9 1.0 2.5 2 1 0 3 3 3 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|449068114|ref|YP_007435196.1| - 6.5e-08 32.4 0.4 1.4e-06 28.1 0.4 2.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|449068114|ref|YP_007435196.1| - 2.1e-05 23.9 0.5 0.00034 20.0 0.2 2.2 1 1 0 2 2 2 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|449068114|ref|YP_007435196.1| - 2.5e-05 25.0 1.6 0.0016 19.1 0.6 2.2 1 1 0 2 2 2 1 Alpha/beta hydrolase family LIP PF03583.14 gi|449068114|ref|YP_007435196.1| - 0.00024 20.5 0.7 0.0017 17.7 0.2 2.0 1 1 0 2 2 2 1 Secretory lipase BAAT_C PF08840.11 gi|449068114|ref|YP_007435196.1| - 0.025 14.5 0.1 0.96 9.3 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.13 gi|449068114|ref|YP_007435196.1| - 0.056 13.3 0.2 1.5 8.7 0.0 2.7 2 1 0 2 2 2 0 alpha/beta hydrolase fold DUF5050 PF16472.5 gi|449068114|ref|YP_007435196.1| - 0.082 12.1 3.7 0.22 10.8 2.6 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF5050) ResB PF05140.14 gi|449068114|ref|YP_007435196.1| - 0.17 10.6 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 ResB-like family DNA_pol_B PF00136.21 gi|449068116|ref|YP_007435198.1| - 7.2e-15 54.6 1.5 1.6e-12 46.9 1.5 3.1 1 1 0 1 1 1 1 DNA polymerase family B START PF01852.19 gi|449068116|ref|YP_007435198.1| - 0.042 13.2 0.1 0.13 11.6 0.1 1.8 1 0 0 1 1 1 0 START domain YkyA PF10368.9 gi|449068118|ref|YP_007435200.1| - 0.0001 22.1 10.2 0.0001 22.1 10.2 1.6 2 0 0 2 2 1 1 Putative cell-wall binding lipoprotein DUF3782 PF12644.7 gi|449068118|ref|YP_007435200.1| - 0.00023 21.2 10.0 0.0014 18.8 5.3 3.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3782) FlaC_arch PF05377.11 gi|449068118|ref|YP_007435200.1| - 0.00083 19.7 6.3 1.4 9.4 5.0 2.9 1 1 1 2 2 2 2 Flagella accessory protein C (FlaC) NBD94 PF16830.5 gi|449068118|ref|YP_007435200.1| - 0.0022 18.4 14.5 0.0098 16.3 1.8 3.3 1 1 1 2 2 2 1 Nucleotide-Binding Domain 94 of RH FlgN PF05130.12 gi|449068118|ref|YP_007435200.1| - 0.0023 18.5 3.5 0.0045 17.5 3.5 1.5 1 0 0 1 1 1 1 FlgN protein DUF4201 PF13870.6 gi|449068118|ref|YP_007435200.1| - 0.0032 17.2 8.6 0.006 16.3 8.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) UPF0242 PF06785.11 gi|449068118|ref|YP_007435200.1| - 0.0043 17.2 7.6 0.01 16.0 7.6 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus RmuC PF02646.16 gi|449068118|ref|YP_007435200.1| - 0.0081 15.3 6.7 0.11 11.6 0.6 2.1 1 1 1 2 2 2 2 RmuC family APG6_N PF17675.1 gi|449068118|ref|YP_007435200.1| - 0.0096 16.5 8.2 0.022 15.3 8.2 1.6 1 0 0 1 1 1 1 Apg6 coiled-coil region GIT_CC PF16559.5 gi|449068118|ref|YP_007435200.1| - 0.01 15.7 2.2 0.18 11.7 1.4 2.4 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DegS PF05384.11 gi|449068118|ref|YP_007435200.1| - 0.014 14.9 6.8 0.014 14.9 6.8 2.2 1 1 1 2 2 2 0 Sensor protein DegS DUF1664 PF07889.12 gi|449068118|ref|YP_007435200.1| - 0.016 15.2 7.8 0.3 11.1 4.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Arfaptin PF06456.13 gi|449068118|ref|YP_007435200.1| - 0.019 14.6 0.8 0.025 14.2 0.8 1.3 1 0 0 1 1 1 0 Arfaptin-like domain DUF1465 PF07323.12 gi|449068118|ref|YP_007435200.1| - 0.024 14.5 0.6 0.069 13.0 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) TMPIT PF07851.13 gi|449068118|ref|YP_007435200.1| - 0.035 13.4 5.7 0.056 12.7 5.7 1.3 1 0 0 1 1 1 0 TMPIT-like protein MCPsignal PF00015.21 gi|449068118|ref|YP_007435200.1| - 0.039 13.8 7.0 0.066 13.0 3.4 2.2 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain ADIP PF11559.8 gi|449068118|ref|YP_007435200.1| - 0.07 13.2 7.3 0.12 12.5 7.3 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding YabA PF06156.13 gi|449068118|ref|YP_007435200.1| - 0.073 13.7 7.4 0.26 11.9 7.1 2.0 1 1 1 2 2 2 0 Initiation control protein YabA Nup54 PF13874.6 gi|449068118|ref|YP_007435200.1| - 0.099 12.8 5.6 0.33 11.1 4.4 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 CENP-H PF05837.12 gi|449068118|ref|YP_007435200.1| - 0.099 13.1 7.9 0.24 11.8 7.9 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) CCDC-167 PF15188.6 gi|449068118|ref|YP_007435200.1| - 0.11 12.8 14.0 1.9 8.9 8.7 3.1 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 Atg14 PF10186.9 gi|449068118|ref|YP_007435200.1| - 0.12 11.4 5.5 0.18 10.9 5.5 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 S_4TM PF18159.1 gi|449068118|ref|YP_007435200.1| - 0.15 11.3 7.3 0.065 12.5 5.1 1.5 2 0 0 2 2 1 0 SMODS-associating 4TM effector domain Seryl_tRNA_N PF02403.22 gi|449068118|ref|YP_007435200.1| - 0.19 12.0 15.4 0.023 15.0 11.2 1.6 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|449068118|ref|YP_007435200.1| - 0.19 12.0 0.7 0.62 10.4 0.6 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.6 gi|449068118|ref|YP_007435200.1| - 0.2 12.0 12.2 0.46 10.9 12.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Sec34 PF04136.15 gi|449068118|ref|YP_007435200.1| - 0.22 11.4 3.8 0.39 10.6 0.9 1.9 1 1 1 2 2 2 0 Sec34-like family Fib_alpha PF08702.10 gi|449068118|ref|YP_007435200.1| - 0.24 11.6 6.9 0.48 10.6 6.9 1.5 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family eIF3_N PF09440.10 gi|449068118|ref|YP_007435200.1| - 0.3 11.5 3.3 0.77 10.2 3.3 1.7 1 1 0 1 1 1 0 eIF3 subunit 6 N terminal domain Sec20 PF03908.13 gi|449068118|ref|YP_007435200.1| - 0.42 10.6 4.0 1.1 9.2 2.6 2.3 1 1 0 2 2 2 0 Sec20 Flagellar_rod PF05149.12 gi|449068118|ref|YP_007435200.1| - 0.46 9.9 9.7 0.23 10.9 4.5 2.2 1 1 1 2 2 2 0 Paraflagellar rod protein DUF4446 PF14584.6 gi|449068118|ref|YP_007435200.1| - 0.62 10.0 6.7 2.4 8.1 4.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF16 PF01519.16 gi|449068118|ref|YP_007435200.1| - 0.65 10.5 8.4 2.9 8.4 8.4 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 NRN1 PF15056.6 gi|449068118|ref|YP_007435200.1| - 0.88 9.7 5.5 2.2 8.4 1.7 2.4 1 1 1 2 2 2 0 Neuritin protein family DUF2203 PF09969.9 gi|449068118|ref|YP_007435200.1| - 0.93 10.2 6.8 3.7 8.3 6.8 2.2 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) ZapB PF06005.12 gi|449068118|ref|YP_007435200.1| - 0.95 9.9 13.1 1 9.9 10.0 2.3 1 1 1 2 2 2 0 Cell division protein ZapB FadR_C PF07840.12 gi|449068118|ref|YP_007435200.1| - 1.2 9.0 6.3 1.9 8.4 0.2 2.7 1 1 2 3 3 3 0 FadR C-terminal domain OmpH PF03938.14 gi|449068118|ref|YP_007435200.1| - 1.3 9.3 12.2 0.92 9.8 8.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) ACCA PF03255.14 gi|449068118|ref|YP_007435200.1| - 1.4 8.7 8.1 2.5 8.0 3.4 2.4 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Snapin_Pallidin PF14712.6 gi|449068118|ref|YP_007435200.1| - 1.6 9.2 10.8 0.13 12.7 4.7 2.4 3 1 0 3 3 1 0 Snapin/Pallidin LPD11 PF18824.1 gi|449068118|ref|YP_007435200.1| - 1.8 8.7 9.6 3 8.0 2.4 3.4 3 1 1 4 4 2 0 Large polyvalent protein-associated domain 11 COG2 PF06148.11 gi|449068118|ref|YP_007435200.1| - 2 8.5 4.8 4.2 7.5 2.9 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 zf-C4H2 PF10146.9 gi|449068118|ref|YP_007435200.1| - 2.1 8.6 11.9 1.6 9.0 10.8 1.3 1 1 0 1 1 1 0 Zinc finger-containing protein DUF4164 PF13747.6 gi|449068118|ref|YP_007435200.1| - 2.3 8.5 8.7 1.1 9.5 5.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF724 PF05266.14 gi|449068118|ref|YP_007435200.1| - 2.4 7.9 11.0 7.3 6.4 11.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Uso1_p115_C PF04871.13 gi|449068118|ref|YP_007435200.1| - 2.8 8.3 7.0 7.1 7.0 7.0 1.6 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region BRE1 PF08647.11 gi|449068118|ref|YP_007435200.1| - 2.9 8.0 15.2 0.38 10.9 10.1 2.1 2 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase DUF2115 PF09888.9 gi|449068118|ref|YP_007435200.1| - 3.1 8.3 5.7 4.2 7.9 2.5 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) Cluap1 PF10234.9 gi|449068118|ref|YP_007435200.1| - 5.3 6.4 12.9 0.79 9.1 8.5 1.7 2 1 1 3 3 2 0 Clusterin-associated protein-1 Cauli_AT PF03233.13 gi|449068118|ref|YP_007435200.1| - 7.5 6.5 14.6 1.3 9.0 3.4 2.5 2 1 1 3 3 3 0 Aphid transmission protein Carbpep_Y_N PF05388.11 gi|449068118|ref|YP_007435200.1| - 9.3 6.8 9.7 38 4.8 6.0 2.4 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide DUF2079 PF09852.9 gi|449068119|ref|YP_007435201.1| - 3.7e-24 85.4 35.0 5.5e-24 84.8 35.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) DUF2079 PF09852.9 gi|449068120|ref|YP_007435202.1| - 3e-108 362.6 37.7 3e-108 362.6 37.7 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2079) DUF608 PF04685.13 gi|449068120|ref|YP_007435202.1| - 0.015 14.5 0.3 0.024 13.8 0.3 1.2 1 0 0 1 1 1 0 Glycosyl-hydrolase family 116, catalytic region zinc_ribbon_2 PF13240.6 gi|449068121|ref|YP_007435203.1| - 4.3e-06 26.3 5.8 6.7e-06 25.6 5.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|449068121|ref|YP_007435203.1| - 0.00036 19.8 1.1 0.00081 18.7 1.1 1.5 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|449068121|ref|YP_007435203.1| - 0.0004 20.3 2.6 0.00063 19.7 2.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon Gemini_mov PF01708.16 gi|449068121|ref|YP_007435203.1| - 0.0015 18.2 0.3 0.0029 17.3 0.3 1.5 1 0 0 1 1 1 1 Geminivirus putative movement protein DUF3094 PF11293.8 gi|449068121|ref|YP_007435203.1| - 0.017 14.9 0.1 0.03 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) RskA PF10099.9 gi|449068121|ref|YP_007435203.1| - 0.058 13.7 0.0 0.071 13.4 0.0 1.1 1 0 0 1 1 1 0 Anti-sigma-K factor rskA YhfH PF14149.6 gi|449068121|ref|YP_007435203.1| - 0.32 11.0 1.9 24 5.0 0.0 2.6 2 0 0 2 2 2 0 YhfH-like protein zf-ribbon_3 PF13248.6 gi|449068121|ref|YP_007435203.1| - 0.57 9.7 4.5 0.94 9.0 4.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|449068121|ref|YP_007435203.1| - 0.6 10.9 3.9 1.2 9.9 3.9 1.6 1 0 0 1 1 1 0 zinc-ribbon family RNA_POL_M_15KD PF02150.16 gi|449068121|ref|YP_007435203.1| - 3.9 7.4 5.5 56 3.7 5.5 2.2 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.9 gi|449068121|ref|YP_007435203.1| - 4.2 7.5 6.3 49 4.1 6.3 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 RibD_C PF01872.17 gi|449068122|ref|YP_007435204.1| - 2.7e-49 167.7 0.0 3.1e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain GDPD PF03009.17 gi|449068123|ref|YP_007435205.1| - 1e-30 107.4 1.6 1.8e-30 106.6 1.6 1.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|449068123|ref|YP_007435205.1| - 0.0032 17.9 0.1 0.023 15.2 0.1 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family eIF-6 PF01912.18 gi|449068123|ref|YP_007435205.1| - 0.086 12.2 1.0 0.14 11.5 1.0 1.4 1 0 0 1 1 1 0 eIF-6 family DUF488 PF04343.13 gi|449068124|ref|YP_007435206.1| - 7.2e-19 68.6 0.0 1.2e-18 67.9 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function, DUF488 DUF3669 PF12417.8 gi|449068124|ref|YP_007435206.1| - 0.028 14.6 0.6 0.077 13.2 0.6 1.7 2 0 0 2 2 2 0 Zinc finger protein HTH_10 PF04967.12 gi|449068125|ref|YP_007435207.1| - 1.3e-20 72.9 0.2 2.9e-20 71.8 0.2 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|449068125|ref|YP_007435207.1| - 5.1e-06 25.9 0.8 1.2e-05 24.7 0.8 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|449068125|ref|YP_007435207.1| - 0.0001 21.8 0.7 0.00024 20.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|449068125|ref|YP_007435207.1| - 0.023 15.1 0.0 0.073 13.5 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_AsnC-type PF13404.6 gi|449068125|ref|YP_007435207.1| - 0.024 14.5 0.1 0.075 12.9 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|449068125|ref|YP_007435207.1| - 0.037 13.8 0.2 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|449068125|ref|YP_007435207.1| - 0.049 13.8 0.0 0.45 10.7 0.0 2.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|449068125|ref|YP_007435207.1| - 0.054 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family CIDE-N PF02017.15 gi|449068125|ref|YP_007435207.1| - 0.069 13.2 0.2 15 5.7 0.0 2.7 2 0 0 2 2 2 0 CIDE-N domain HTH_Tnp_ISL3 PF13542.6 gi|449068125|ref|YP_007435207.1| - 0.095 12.1 0.2 0.98 8.9 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.12 gi|449068125|ref|YP_007435207.1| - 0.18 11.5 2.2 3.7 7.3 0.1 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_Mga PF08280.11 gi|449068125|ref|YP_007435207.1| - 0.18 11.8 3.2 0.66 10.0 0.1 3.0 3 1 0 3 3 3 0 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.16 gi|449068125|ref|YP_007435207.1| - 0.25 11.1 1.4 2.4 8.0 1.4 2.4 1 1 0 1 1 1 0 LexA DNA binding domain RHH_1 PF01402.21 gi|449068125|ref|YP_007435207.1| - 1.7 8.7 4.9 21 5.2 0.5 3.2 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family Amidase PF01425.21 gi|449068126|ref|YP_007435208.1| - 2.4e-111 372.9 0.0 2.7e-111 372.7 0.0 1.0 1 0 0 1 1 1 1 Amidase LTD PF00932.19 gi|449068127|ref|YP_007435209.1| - 0.0057 17.0 0.4 0.0079 16.5 0.4 1.2 1 0 0 1 1 1 1 Lamin Tail Domain PCNA_C PF02747.15 gi|449068127|ref|YP_007435209.1| - 0.0071 16.5 0.2 0.0098 16.1 0.2 1.2 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DUF973 PF06157.11 gi|449068127|ref|YP_007435209.1| - 0.01 15.0 16.3 0.086 11.9 16.3 1.8 1 1 1 2 2 2 2 Protein of unknown function (DUF973) TRAPPC9-Trs120 PF08626.11 gi|449068127|ref|YP_007435209.1| - 0.023 12.1 0.1 0.029 11.7 0.1 1.0 1 0 0 1 1 1 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit DUF11 PF01345.18 gi|449068127|ref|YP_007435209.1| - 0.024 14.9 1.5 0.037 14.3 1.5 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF11 DUF4330 PF14221.6 gi|449068127|ref|YP_007435209.1| - 0.063 13.5 5.5 0.28 11.4 5.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) Thermopsin PF05317.11 gi|449068128|ref|YP_007435210.1| - 2.8e-61 207.3 17.7 2.8e-61 207.3 17.7 2.6 2 1 0 2 2 2 1 Thermopsin DUF4265 PF14085.6 gi|449068129|ref|YP_007435211.1| - 0.017 15.1 0.0 0.19 11.7 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4265) Pab87_oct PF13969.6 gi|449068129|ref|YP_007435211.1| - 0.12 12.4 0.3 1.2 9.2 0.1 2.5 2 1 1 3 3 3 0 Pab87 octamerisation domain DUF973 PF06157.11 gi|449068130|ref|YP_007435212.1| - 2.5e-19 69.5 21.6 5.9e-19 68.3 21.6 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Bcl-2 PF00452.19 gi|449068132|ref|YP_007435214.1| - 0.32 11.7 1.1 5.2 7.8 0.0 2.1 2 0 0 2 2 2 0 Apoptosis regulator proteins, Bcl-2 family Lactamase_B PF00753.27 gi|449068134|ref|YP_007435216.1| - 1.3e-14 54.7 0.0 1.8e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF4861 PF16153.5 gi|449068134|ref|YP_007435216.1| - 0.014 14.4 0.0 0.021 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4861) DUF3124 PF11322.8 gi|449068135|ref|YP_007435217.1| - 0.17 12.1 1.8 0.46 10.7 0.6 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3124) AA_permease PF00324.21 gi|449068136|ref|YP_007435218.1| - 5.8e-28 97.7 54.7 8e-28 97.3 54.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|449068136|ref|YP_007435218.1| - 2.4e-25 89.3 57.3 4.2e-25 88.4 56.8 1.5 1 1 0 1 1 1 1 Amino acid permease DUF1805 PF08827.11 gi|449068136|ref|YP_007435218.1| - 0.19 12.1 0.2 0.39 11.1 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1805) SLATT_5 PF18160.1 gi|449068136|ref|YP_007435218.1| - 1.1 8.6 9.7 0.13 11.6 2.4 2.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF2583 PF10762.9 gi|449068136|ref|YP_007435218.1| - 2.8 8.4 5.6 5.4 7.5 2.7 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) Cu_amine_oxid PF01179.20 gi|449068137|ref|YP_007435219.1| - 1.9e-148 494.8 0.0 2.3e-148 494.5 0.0 1.1 1 0 0 1 1 1 1 Copper amine oxidase, enzyme domain Cu_amine_oxidN3 PF02728.16 gi|449068137|ref|YP_007435219.1| - 1.8e-15 57.2 0.0 4.7e-15 55.8 0.0 1.7 2 0 0 2 2 2 1 Copper amine oxidase, N3 domain Cu_amine_oxidN2 PF02727.16 gi|449068137|ref|YP_007435219.1| - 8.6e-07 29.1 0.1 1.5e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 Copper amine oxidase, N2 domain HTH_10 PF04967.12 gi|449068138|ref|YP_007435220.1| - 1.2e-21 76.2 0.4 2.6e-21 75.2 0.4 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|449068138|ref|YP_007435220.1| - 8.5e-07 28.4 0.2 2e-06 27.2 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|449068138|ref|YP_007435220.1| - 5.5e-05 22.6 0.2 0.00018 21.0 0.2 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|449068138|ref|YP_007435220.1| - 0.012 15.5 0.0 0.033 14.1 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_Tnp_1_2 PF13022.6 gi|449068138|ref|YP_007435220.1| - 0.028 14.6 0.4 0.078 13.1 0.1 1.9 2 1 1 3 3 3 0 Helix-turn-helix of insertion element transposase UPF0122 PF04297.14 gi|449068138|ref|YP_007435220.1| - 0.03 14.6 2.7 0.17 12.2 0.3 2.5 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like LexA_DNA_bind PF01726.16 gi|449068138|ref|YP_007435220.1| - 0.033 14.0 0.8 0.18 11.6 0.8 2.2 1 1 0 1 1 1 0 LexA DNA binding domain HTH_3 PF01381.22 gi|449068138|ref|YP_007435220.1| - 0.053 13.6 0.1 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_Crp_2 PF13545.6 gi|449068138|ref|YP_007435220.1| - 0.056 13.4 0.4 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_26 PF13443.6 gi|449068138|ref|YP_007435220.1| - 0.066 13.7 0.1 0.19 12.2 0.1 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MafB19-deam PF14437.6 gi|449068138|ref|YP_007435220.1| - 0.071 12.9 0.6 2.4 7.9 0.1 2.7 1 1 2 3 3 3 0 MafB19-like deaminase HTH_35 PF13693.6 gi|449068138|ref|YP_007435220.1| - 0.08 13.0 0.5 0.22 11.6 0.1 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding LRR_2 PF07723.13 gi|449068138|ref|YP_007435220.1| - 0.085 13.6 0.0 0.24 12.1 0.0 1.8 1 0 0 1 1 1 0 Leucine Rich Repeat HTH_23 PF13384.6 gi|449068138|ref|YP_007435220.1| - 0.097 12.5 0.3 0.36 10.7 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain GerE PF00196.19 gi|449068138|ref|YP_007435220.1| - 0.099 12.2 3.1 0.56 9.8 0.8 2.9 2 1 0 2 2 2 0 Bacterial regulatory proteins, luxR family CIDE-N PF02017.15 gi|449068138|ref|YP_007435220.1| - 0.11 12.5 0.4 7.7 6.6 0.2 2.5 2 0 0 2 2 2 0 CIDE-N domain HTH_psq PF05225.16 gi|449068138|ref|YP_007435220.1| - 0.11 12.2 0.0 0.42 10.4 0.0 2.0 2 1 0 2 2 2 0 helix-turn-helix, Psq domain DUF488 PF04343.13 gi|449068139|ref|YP_007435221.1| - 3.1e-27 95.6 0.1 3.8e-27 95.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF1940 PF09155.10 gi|449068139|ref|YP_007435221.1| - 0.11 12.6 0.2 0.12 12.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1940) Aldose_epim PF01263.20 gi|449068140|ref|YP_007435222.1| - 5.8e-36 124.3 0.0 1.4e-35 123.0 0.0 1.6 1 1 0 1 1 1 1 Aldose 1-epimerase RimM PF01782.18 gi|449068140|ref|YP_007435222.1| - 0.15 12.3 0.0 0.49 10.6 0.0 1.8 2 0 0 2 2 2 0 RimM N-terminal domain TrkA_N PF02254.18 gi|449068141|ref|YP_007435223.1| - 1.8e-17 63.7 0.3 2.9e-17 63.0 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|449068141|ref|YP_007435223.1| - 2e-05 24.3 0.4 0.0002 21.1 0.0 2.6 3 0 0 3 3 3 1 TrkA-C domain Ion_trans_2 PF07885.16 gi|449068141|ref|YP_007435223.1| - 0.013 15.4 8.5 0.026 14.5 8.5 1.5 1 0 0 1 1 1 0 Ion channel Amidohydro_2 PF04909.14 gi|449068142|ref|YP_007435224.1| - 1.5e-13 51.2 0.0 2.9e-13 50.3 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase VCBS PF13517.6 gi|449068142|ref|YP_007435224.1| - 0.049 14.2 0.1 0.098 13.3 0.1 1.5 1 0 0 1 1 1 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Ribonuc_red_sm PF00268.21 gi|449068144|ref|YP_007435226.1| - 7.2e-21 74.9 0.2 1.2e-20 74.1 0.2 1.3 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Rubrerythrin PF02915.17 gi|449068144|ref|YP_007435226.1| - 0.00077 19.9 0.2 0.16 12.4 0.2 2.7 2 1 0 2 2 2 2 Rubrerythrin DUF455 PF04305.14 gi|449068144|ref|YP_007435226.1| - 0.0081 15.7 0.0 0.8 9.2 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF455) AA_permease_2 PF13520.6 gi|449068145|ref|YP_007435227.1| - 2e-42 145.5 52.4 2e-42 145.5 52.4 2.2 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|449068145|ref|YP_007435227.1| - 2.3e-28 99.1 53.5 2.3e-28 99.1 53.5 2.2 1 1 0 1 1 1 1 Amino acid permease DUF3487 PF11990.8 gi|449068145|ref|YP_007435227.1| - 0.0018 18.2 0.6 0.0018 18.2 0.6 5.3 5 1 1 6 6 6 1 Protein of unknown function (DUF3487) LHC PF00556.20 gi|449068145|ref|YP_007435227.1| - 1.4 9.2 5.3 3.1 8.1 0.9 3.7 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit Malate_synthase PF01274.22 gi|449068146|ref|YP_007435228.1| - 3.9e-43 147.5 0.0 9e-39 133.1 0.0 2.2 2 0 0 2 2 2 2 Malate synthase DUF4413 PF14372.6 gi|449068146|ref|YP_007435228.1| - 0.13 12.7 1.7 1.8 9.0 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4413) ICL PF00463.21 gi|449068147|ref|YP_007435229.1| - 4.7e-116 388.4 0.3 9e-63 212.5 0.0 2.1 1 1 1 2 2 2 2 Isocitrate lyase family PEP_mutase PF13714.6 gi|449068147|ref|YP_007435229.1| - 2.9e-15 56.4 0.0 5e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase PIN PF01850.21 gi|449068148|ref|YP_007435230.1| - 2.9e-06 27.8 0.0 4.5e-06 27.2 0.0 1.3 1 1 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|449068149|ref|YP_007435231.1| - 2e-12 46.7 0.1 3e-12 46.1 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DNA_ligase_OB PF03120.16 gi|449068149|ref|YP_007435231.1| - 0.12 12.2 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain PaREP1 PF05942.11 gi|449068151|ref|YP_007435233.1| - 7e-24 84.0 0.4 8.3e-24 83.7 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MR_MLE_C PF13378.6 gi|449068152|ref|YP_007435234.1| - 7.5e-55 185.9 0.0 9.5e-55 185.5 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|449068152|ref|YP_007435234.1| - 7.1e-10 39.1 0.0 1.2e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain His_biosynth PF00977.21 gi|449068152|ref|YP_007435234.1| - 0.024 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein Lig_C PF18330.1 gi|449068153|ref|YP_007435235.1| - 0.041 13.9 0.0 0.05 13.6 0.0 1.1 1 0 0 1 1 1 0 Ligase Pab1020 C-terminal region Rhodanese PF00581.20 gi|449068154|ref|YP_007435236.1| - 6.8e-41 139.1 0.2 1.5e-20 73.7 0.0 2.2 2 0 0 2 2 2 2 Rhodanese-like domain TP_methylase PF00590.20 gi|449068156|ref|YP_007435238.1| - 5.9e-43 147.3 0.0 6.8e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NIR_SIR PF01077.22 gi|449068157|ref|YP_007435239.1| - 2.2e-37 128.0 0.0 3.9e-35 120.7 0.0 3.1 2 2 1 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|449068157|ref|YP_007435239.1| - 3.6e-24 84.4 0.9 9.2e-11 41.4 0.0 4.2 4 1 0 4 4 4 2 Nitrite/Sulfite reductase ferredoxin-like half domain PAPS_reduct PF01507.19 gi|449068159|ref|YP_007435241.1| - 6.2e-46 156.6 0.1 7.5e-46 156.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RsfS PF02410.15 gi|449068159|ref|YP_007435241.1| - 0.011 16.1 0.0 0.017 15.6 0.0 1.4 1 1 0 1 1 1 0 Ribosomal silencing factor during starvation Peptidase_S8_N PF16361.5 gi|449068159|ref|YP_007435241.1| - 0.11 13.0 0.1 0.17 12.3 0.1 1.4 1 1 0 1 1 1 0 N-terminal of Subtilase family ATP-sulfurylase PF01747.17 gi|449068160|ref|YP_007435242.1| - 1.4e-78 263.2 0.0 1.9e-78 262.8 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|449068160|ref|YP_007435242.1| - 2.3e-41 141.1 0.1 3.7e-41 140.4 0.1 1.3 1 0 0 1 1 1 1 PUA-like domain TF_Zn_Ribbon PF08271.12 gi|449068160|ref|YP_007435242.1| - 0.00087 18.8 0.4 0.00087 18.8 0.4 1.9 3 0 0 3 3 3 1 TFIIB zinc-binding DUF309 PF03745.14 gi|449068160|ref|YP_007435242.1| - 0.095 12.4 0.5 1.5 8.6 0.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF309) zf-ribbon_3 PF13248.6 gi|449068160|ref|YP_007435242.1| - 0.17 11.3 0.7 0.27 10.7 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon domain ADH_N PF08240.12 gi|449068162|ref|YP_007435244.1| - 5.4e-24 84.2 1.0 9.3e-23 80.2 1.0 2.2 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449068162|ref|YP_007435244.1| - 9.5e-17 61.2 0.0 1.2e-15 57.6 0.0 2.3 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|449068162|ref|YP_007435244.1| - 1.6e-12 48.6 0.1 3.7e-12 47.5 0.0 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|449068162|ref|YP_007435244.1| - 1.7e-06 27.7 0.1 2.6e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Epimerase PF01370.21 gi|449068162|ref|YP_007435244.1| - 0.00066 19.2 0.1 0.0011 18.5 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|449068162|ref|YP_007435244.1| - 0.031 13.4 0.1 0.047 12.8 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|449068162|ref|YP_007435244.1| - 0.053 13.0 0.3 0.17 11.3 0.1 1.8 2 0 0 2 2 2 0 short chain dehydrogenase Citrate_bind PF16114.5 gi|449068162|ref|YP_007435244.1| - 0.057 12.9 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 ATP citrate lyase citrate-binding NADH_4Fe-4S PF10589.9 gi|449068162|ref|YP_007435244.1| - 0.057 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ThiF PF00899.21 gi|449068162|ref|YP_007435244.1| - 0.15 11.4 0.2 0.25 10.6 0.2 1.3 1 0 0 1 1 1 0 ThiF family RmlD_sub_bind PF04321.17 gi|449068162|ref|YP_007435244.1| - 0.19 10.8 0.2 0.96 8.5 0.2 1.9 1 1 0 1 1 1 0 RmlD substrate binding domain Lip_prot_lig_C PF10437.9 gi|449068163|ref|YP_007435245.1| - 0.00014 21.8 0.3 0.00048 20.1 0.1 2.0 2 0 0 2 2 2 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|449068163|ref|YP_007435245.1| - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family AMP-binding PF00501.28 gi|449068164|ref|YP_007435246.1| - 1.8e-68 231.1 0.0 2.1e-68 230.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449068164|ref|YP_007435246.1| - 3.7e-08 34.2 0.1 6.7e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 3HCDH_N PF02737.18 gi|449068165|ref|YP_007435247.1| - 1.5e-64 217.2 1.1 3.1e-64 216.2 1.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|449068165|ref|YP_007435247.1| - 4.2e-52 176.9 0.0 7.6e-52 176.1 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|449068165|ref|YP_007435247.1| - 1e-44 151.1 0.1 2.4e-23 82.5 0.1 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|449068165|ref|YP_007435247.1| - 2.3e-35 122.7 0.6 8.8e-35 120.8 0.1 2.1 2 1 0 2 2 2 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|449068165|ref|YP_007435247.1| - 0.00064 19.9 0.0 0.0017 18.5 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|449068165|ref|YP_007435247.1| - 0.0019 17.5 0.1 0.0035 16.6 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|449068165|ref|YP_007435247.1| - 0.017 14.5 0.1 0.034 13.5 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|449068165|ref|YP_007435247.1| - 0.023 14.2 0.0 0.054 13.1 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|449068165|ref|YP_007435247.1| - 0.028 15.0 0.1 0.09 13.4 0.1 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Methyltransf_11 PF08241.12 gi|449068165|ref|YP_007435247.1| - 0.049 14.3 0.1 0.18 12.5 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain NAD_Gly3P_dh_N PF01210.23 gi|449068165|ref|YP_007435247.1| - 0.094 12.7 0.1 0.33 10.9 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|449068165|ref|YP_007435247.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Pyr_redox PF00070.27 gi|449068165|ref|YP_007435247.1| - 0.12 12.9 0.1 1.2 9.8 0.3 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Dimerisation PF08100.11 gi|449068165|ref|YP_007435247.1| - 0.21 11.6 1.5 0.72 9.9 0.2 2.4 2 0 0 2 2 2 0 Dimerisation domain TrkA_N PF02254.18 gi|449068165|ref|YP_007435247.1| - 2.4 8.5 4.3 7.3 6.9 0.2 3.3 4 0 0 4 4 4 0 TrkA-N domain Thiolase_N PF00108.23 gi|449068166|ref|YP_007435248.1| - 1.2e-25 90.4 0.0 2e-25 89.7 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449068166|ref|YP_007435248.1| - 8.2e-09 35.2 0.1 2.4e-06 27.2 0.0 2.8 2 0 0 2 2 2 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|449068166|ref|YP_007435248.1| - 1e-07 31.9 5.6 5e-07 29.5 0.9 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|449068166|ref|YP_007435248.1| - 4.3e-07 29.7 0.2 2e-05 24.3 0.1 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.12 gi|449068166|ref|YP_007435248.1| - 0.0013 18.1 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 FAE1/Type III polyketide synthase-like protein SpoVAD PF07451.11 gi|449068166|ref|YP_007435248.1| - 0.067 11.9 0.2 0.17 10.6 0.1 1.7 2 1 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) OB_aCoA_assoc PF01796.17 gi|449068167|ref|YP_007435249.1| - 1.6e-13 50.4 0.0 2.5e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|449068167|ref|YP_007435249.1| - 1.8e-11 43.7 0.2 2.7e-11 43.1 0.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Auto_anti-p27 PF06677.12 gi|449068167|ref|YP_007435249.1| - 0.018 15.2 3.5 0.035 14.2 0.8 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) SRAP PF02586.14 gi|449068167|ref|YP_007435249.1| - 0.13 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 SOS response associated peptidase (SRAP) zf-C2H2_3 PF13878.6 gi|449068167|ref|YP_007435249.1| - 0.38 10.6 1.6 0.42 10.5 0.1 1.8 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO AMP-binding PF00501.28 gi|449068168|ref|YP_007435250.1| - 1.6e-85 287.3 0.0 1.9e-85 287.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449068168|ref|YP_007435250.1| - 3.3e-22 79.2 0.0 7.6e-22 78.1 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Ribonuc_red_sm PF00268.21 gi|449068169|ref|YP_007435251.1| - 3.8e-16 59.4 0.0 6e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain DUF455 PF04305.14 gi|449068169|ref|YP_007435251.1| - 0.0058 16.2 0.0 3.5 7.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF455) Cu_amine_oxid PF01179.20 gi|449068169|ref|YP_007435251.1| - 0.065 12.1 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Copper amine oxidase, enzyme domain AurF PF11583.8 gi|449068169|ref|YP_007435251.1| - 0.066 12.5 0.6 2.8 7.1 0.0 2.4 3 0 0 3 3 3 0 P-aminobenzoate N-oxygenase AurF Rubrerythrin PF02915.17 gi|449068169|ref|YP_007435251.1| - 0.11 12.8 1.8 0.72 10.3 0.1 2.8 3 1 0 3 3 3 0 Rubrerythrin Abhydrolase_1 PF00561.20 gi|449068170|ref|YP_007435252.1| - 5e-27 95.2 0.5 3.4e-17 62.9 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|449068170|ref|YP_007435252.1| - 3.4e-15 56.0 0.0 5.3e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|449068170|ref|YP_007435252.1| - 1.1e-12 49.0 0.0 1.6e-12 48.5 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|449068170|ref|YP_007435252.1| - 0.00032 20.2 0.4 0.16 11.5 0.0 2.5 2 1 0 2 2 2 2 Prolyl oligopeptidase family FSH1 PF03959.13 gi|449068170|ref|YP_007435252.1| - 0.0035 17.0 0.0 0.0073 16.0 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_5 PF12695.7 gi|449068170|ref|YP_007435252.1| - 0.015 15.1 0.0 5.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|449068170|ref|YP_007435252.1| - 0.033 13.9 0.1 0.14 11.9 0.0 1.9 1 1 0 2 2 2 0 PGAP1-like protein Abhydrolase_4 PF08386.10 gi|449068170|ref|YP_007435252.1| - 0.065 13.3 0.0 0.099 12.8 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Thioesterase PF00975.20 gi|449068170|ref|YP_007435252.1| - 0.13 12.4 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain TAT_signal PF10518.9 gi|449068170|ref|YP_007435252.1| - 0.16 11.9 1.3 0.27 11.1 1.3 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2048 PF09752.9 gi|449068170|ref|YP_007435252.1| - 0.22 10.6 0.0 0.33 10.0 0.0 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 RIFIN PF02009.16 gi|449068171|ref|YP_007435253.1| - 0.0017 18.3 5.1 0.0023 17.9 5.1 1.2 1 0 0 1 1 1 1 Rifin Pex24p PF06398.11 gi|449068171|ref|YP_007435253.1| - 0.014 14.4 1.5 0.022 13.8 1.5 1.3 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin Stevor PF17410.2 gi|449068171|ref|YP_007435253.1| - 0.03 13.9 2.5 0.047 13.2 2.5 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF1180 PF06679.12 gi|449068171|ref|YP_007435253.1| - 0.38 11.2 7.2 0.62 10.5 7.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) SCP2 PF02036.17 gi|449068173|ref|YP_007435255.1| - 0.0044 17.5 0.0 0.0075 16.7 0.0 1.4 1 0 0 1 1 1 1 SCP-2 sterol transfer family TFCD_C PF12612.8 gi|449068173|ref|YP_007435255.1| - 0.041 13.7 0.0 0.056 13.3 0.0 1.3 1 0 0 1 1 1 0 Tubulin folding cofactor D C terminal Acyl-CoA_dh_1 PF00441.24 gi|449068174|ref|YP_007435256.1| - 6.3e-42 143.3 3.4 9.8e-42 142.7 3.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|449068174|ref|YP_007435256.1| - 1.8e-33 115.6 1.7 2.7e-32 111.8 0.0 2.7 3 1 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449068174|ref|YP_007435256.1| - 3.2e-26 91.4 0.0 6.1e-26 90.5 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|449068174|ref|YP_007435256.1| - 1.3e-19 70.8 2.9 2.6e-19 69.8 2.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain PucR PF07905.11 gi|449068174|ref|YP_007435256.1| - 0.014 15.7 0.1 0.22 11.8 0.0 2.6 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family HpaB_N PF11794.8 gi|449068174|ref|YP_007435256.1| - 0.069 12.8 0.1 0.18 11.4 0.1 1.7 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal 3HCDH_N PF02737.18 gi|449068175|ref|YP_007435257.1| - 5.5e-64 215.4 1.5 8.6e-64 214.7 1.5 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|449068175|ref|YP_007435257.1| - 2.9e-53 180.8 0.0 2e-52 178.0 0.0 2.0 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|449068175|ref|YP_007435257.1| - 1.2e-34 118.7 0.0 9.1e-24 83.9 0.0 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|449068175|ref|YP_007435257.1| - 9.7e-34 117.3 0.0 2.1e-30 106.4 0.0 2.8 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|449068175|ref|YP_007435257.1| - 8e-07 29.2 0.1 1.8e-06 28.0 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|449068175|ref|YP_007435257.1| - 1.1e-05 25.8 0.3 3.9e-05 24.1 0.3 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|449068175|ref|YP_007435257.1| - 2.6e-05 24.5 0.1 5.2e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|449068175|ref|YP_007435257.1| - 0.00024 20.7 1.0 0.0011 18.6 0.4 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|449068175|ref|YP_007435257.1| - 0.0011 19.2 0.2 0.0028 17.9 0.2 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|449068175|ref|YP_007435257.1| - 0.0015 17.8 0.1 0.0025 17.1 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|449068175|ref|YP_007435257.1| - 0.0053 16.1 0.4 0.011 15.1 0.4 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|449068175|ref|YP_007435257.1| - 0.0097 16.5 0.6 0.06 13.9 0.6 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|449068175|ref|YP_007435257.1| - 0.011 16.1 0.1 0.026 15.0 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|449068175|ref|YP_007435257.1| - 0.018 15.3 0.3 0.09 13.0 0.3 2.2 1 0 0 1 1 1 0 TrkA-N domain OTCace PF00185.24 gi|449068175|ref|YP_007435257.1| - 0.057 13.5 0.1 0.15 12.1 0.1 1.7 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Spore_YtfJ PF09579.10 gi|449068175|ref|YP_007435257.1| - 0.82 9.9 2.7 25 5.1 0.1 3.4 3 0 0 3 3 3 0 Sporulation protein YtfJ (Spore_YtfJ) SCP2 PF02036.17 gi|449068176|ref|YP_007435258.1| - 0.039 14.4 0.0 0.065 13.7 0.0 1.5 1 1 0 1 1 1 0 SCP-2 sterol transfer family Ribonuc_red_sm PF00268.21 gi|449068177|ref|YP_007435259.1| - 9.7e-18 64.6 1.6 1.3e-17 64.2 1.6 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain Haem_oxygenas_2 PF14518.6 gi|449068177|ref|YP_007435259.1| - 0.0088 15.8 0.1 0.079 12.7 0.0 2.3 2 1 1 3 3 3 1 Iron-containing redox enzyme Rubrerythrin PF02915.17 gi|449068177|ref|YP_007435259.1| - 0.033 14.6 1.2 0.84 10.0 0.5 2.4 2 0 0 2 2 2 0 Rubrerythrin COXG PF06240.13 gi|449068178|ref|YP_007435260.1| - 2.2e-09 37.2 0.0 2.5e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) ADH_N PF08240.12 gi|449068179|ref|YP_007435261.1| - 2e-30 104.9 0.3 3.8e-30 104.0 0.3 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|449068179|ref|YP_007435261.1| - 2.2e-24 85.9 0.0 4.5e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|449068179|ref|YP_007435261.1| - 7.3e-07 28.9 0.5 1.3e-06 28.1 0.5 1.3 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|449068179|ref|YP_007435261.1| - 7.7e-07 30.2 0.0 1.3e-06 29.5 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|449068179|ref|YP_007435261.1| - 0.0017 17.7 3.9 0.002 17.5 3.1 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|449068179|ref|YP_007435261.1| - 0.0026 17.2 0.2 0.005 16.2 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|449068179|ref|YP_007435261.1| - 0.057 13.7 0.1 0.087 13.1 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PglD_N PF17836.1 gi|449068179|ref|YP_007435261.1| - 0.076 13.7 0.1 0.2 12.3 0.1 1.7 1 0 0 1 1 1 0 PglD N-terminal domain AMP-binding PF00501.28 gi|449068180|ref|YP_007435262.1| - 1.1e-92 310.9 0.0 1.4e-92 310.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449068180|ref|YP_007435262.1| - 6.6e-18 65.5 0.0 1.2e-17 64.6 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain COXG PF06240.13 gi|449068181|ref|YP_007435263.1| - 2.6e-18 66.1 0.2 2.9e-18 66.0 0.2 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF4595 PF15283.6 gi|449068181|ref|YP_007435263.1| - 0.026 14.6 0.4 0.033 14.2 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4595) with porin-like fold P2 PF07194.11 gi|449068181|ref|YP_007435263.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 P2 response regulator binding domain AhpC-TSA PF00578.21 gi|449068182|ref|YP_007435264.1| - 7.9e-34 116.2 0.0 9.7e-34 116.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|449068182|ref|YP_007435264.1| - 8.7e-21 74.2 0.0 9.9e-21 74.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|449068182|ref|YP_007435264.1| - 0.043 13.3 0.0 0.046 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) SCO1-SenC PF02630.14 gi|449068182|ref|YP_007435264.1| - 0.048 13.6 0.0 0.2 11.6 0.0 1.9 1 1 0 1 1 1 0 SCO1/SenC FPV060 PF17614.2 gi|449068182|ref|YP_007435264.1| - 0.084 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Viral CC-type chemokine AhpC-TSA_2 PF13911.6 gi|449068182|ref|YP_007435264.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.3 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme POR PF01558.18 gi|449068183|ref|YP_007435265.1| - 3.9e-35 121.5 0.3 4.6e-35 121.3 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|449068184|ref|YP_007435266.1| - 1e-20 74.1 0.0 2.1e-20 73.0 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|449068184|ref|YP_007435266.1| - 1.4e-13 51.1 0.1 6.7e-13 48.9 0.0 1.9 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.18 gi|449068184|ref|YP_007435266.1| - 4.5e-10 39.4 0.6 7.7e-06 25.6 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|449068184|ref|YP_007435266.1| - 2.4e-09 36.6 15.2 2.6e-07 30.2 5.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|449068184|ref|YP_007435266.1| - 5.4e-09 36.5 4.6 1.3e-05 25.6 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449068184|ref|YP_007435266.1| - 9e-07 28.7 22.7 2.1e-05 24.4 5.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|449068184|ref|YP_007435266.1| - 2e-06 27.9 10.3 4.2e-06 26.8 10.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449068184|ref|YP_007435266.1| - 2.1e-06 27.8 12.0 4.4e-06 26.7 12.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449068184|ref|YP_007435266.1| - 4.4e-06 26.5 18.8 0.00033 20.6 3.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449068184|ref|YP_007435266.1| - 4.6e-05 23.5 12.8 7.9e-05 22.7 12.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449068184|ref|YP_007435266.1| - 0.00022 22.1 7.5 0.0023 18.8 1.2 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Transketolase_C PF02780.20 gi|449068184|ref|YP_007435266.1| - 0.00055 19.8 0.1 0.0027 17.6 0.0 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_4 PF12800.7 gi|449068184|ref|YP_007435266.1| - 0.0011 19.3 12.6 0.0082 16.6 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|449068184|ref|YP_007435266.1| - 0.006 17.4 6.7 0.006 17.4 6.7 2.5 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|449068184|ref|YP_007435266.1| - 0.012 16.1 9.9 0.066 13.8 1.7 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|449068184|ref|YP_007435266.1| - 0.014 15.8 11.2 0.07 13.6 2.7 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Glyco_transf_90 PF05686.12 gi|449068184|ref|YP_007435266.1| - 0.074 12.0 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 90 Fer4_22 PF17179.4 gi|449068184|ref|YP_007435266.1| - 0.11 13.3 5.7 0.3 11.9 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|449068184|ref|YP_007435266.1| - 0.13 12.8 11.4 1.4 9.5 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|449068184|ref|YP_007435266.1| - 0.4 11.4 13.0 1 10.1 2.6 3.0 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|449068184|ref|YP_007435266.1| - 1.4 9.1 8.1 0.28 11.4 2.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF35_N PF12172.8 gi|449068185|ref|YP_007435267.1| - 2.9e-11 43.0 0.0 4.7e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|449068185|ref|YP_007435267.1| - 3.7e-05 23.6 0.0 5.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DZR PF12773.7 gi|449068185|ref|YP_007435267.1| - 0.027 14.5 0.1 0.041 13.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.17 gi|449068185|ref|YP_007435267.1| - 0.041 13.8 2.4 0.93 9.5 0.2 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_6 PF14599.6 gi|449068185|ref|YP_007435267.1| - 0.65 10.1 3.4 21 5.2 0.2 2.7 2 1 1 3 3 3 0 Zinc-ribbon DUF35_N PF12172.8 gi|449068186|ref|YP_007435268.1| - 4e-08 33.0 0.2 7.2e-08 32.2 0.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|449068186|ref|YP_007435268.1| - 0.00014 21.7 0.3 0.00021 21.2 0.3 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated zf-C6H2 PF15801.5 gi|449068186|ref|YP_007435268.1| - 0.24 11.7 0.5 0.24 11.7 0.5 1.6 2 0 0 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding ADK_lid PF05191.14 gi|449068186|ref|YP_007435268.1| - 1.5 8.9 4.3 3.3 7.8 4.3 1.6 1 0 0 1 1 1 0 Adenylate kinase, active site lid Thiolase_N PF00108.23 gi|449068187|ref|YP_007435269.1| - 2.1e-13 50.2 0.3 4.5e-12 45.9 0.3 2.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449068187|ref|YP_007435269.1| - 0.00099 18.8 0.0 0.99 9.1 0.0 2.5 2 0 0 2 2 2 2 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|449068187|ref|YP_007435269.1| - 0.1 12.5 0.1 2.6 7.9 0.0 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Acyl-CoA_dh_1 PF00441.24 gi|449068189|ref|YP_007435271.1| - 1.3e-41 142.3 0.0 2.3e-41 141.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|449068189|ref|YP_007435271.1| - 6.5e-23 80.8 0.0 1.4e-22 79.7 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|449068189|ref|YP_007435271.1| - 6.2e-16 59.1 0.0 1.7e-15 57.7 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|449068189|ref|YP_007435271.1| - 3.4e-13 50.0 0.0 3.8e-12 46.6 0.0 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|449068190|ref|YP_007435272.1| - 4.1e-73 246.4 0.0 4.9e-73 246.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449068190|ref|YP_007435272.1| - 3.2e-14 53.7 0.3 9.3e-14 52.2 0.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|449068190|ref|YP_007435272.1| - 1.4e-13 50.6 0.4 2.9e-13 49.5 0.4 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus HTH_IclR PF09339.10 gi|449068191|ref|YP_007435273.1| - 3.4e-10 39.5 0.0 5.4e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|449068191|ref|YP_007435273.1| - 4.2e-07 29.8 0.9 7.6e-07 28.9 0.2 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|449068191|ref|YP_007435273.1| - 1.1e-06 28.1 0.3 2.4e-06 27.0 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|449068191|ref|YP_007435273.1| - 2.8e-06 27.7 0.2 6e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|449068191|ref|YP_007435273.1| - 8.9e-06 25.5 0.0 2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|449068191|ref|YP_007435273.1| - 2.4e-05 24.3 0.0 3.9e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|449068191|ref|YP_007435273.1| - 0.00046 20.0 0.0 0.00082 19.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|449068191|ref|YP_007435273.1| - 0.0014 18.7 0.0 0.0028 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|449068191|ref|YP_007435273.1| - 0.0033 17.4 0.0 0.0095 15.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|449068191|ref|YP_007435273.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_45 PF14947.6 gi|449068191|ref|YP_007435273.1| - 0.029 14.4 0.5 0.085 12.8 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|449068191|ref|YP_007435273.1| - 0.062 13.4 0.3 0.094 12.8 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) RNA_pol_Rpc34 PF05158.12 gi|449068191|ref|YP_007435273.1| - 0.081 12.3 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Sigma70_r4 PF04545.16 gi|449068191|ref|YP_007435273.1| - 0.093 12.3 0.2 0.2 11.2 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_AlpA PF05930.12 gi|449068191|ref|YP_007435273.1| - 0.12 12.2 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_29 PF13551.6 gi|449068191|ref|YP_007435273.1| - 0.12 12.4 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|449068191|ref|YP_007435273.1| - 0.12 12.2 0.3 0.52 10.2 0.3 2.1 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain AbiEi_4 PF13338.6 gi|449068191|ref|YP_007435273.1| - 0.15 12.2 0.4 0.15 12.2 0.4 1.6 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Big_9 PF17963.1 gi|449068192|ref|YP_007435274.1| - 0.4 11.5 3.1 8.2 7.2 0.7 2.3 1 1 1 2 2 2 0 Bacterial Ig domain Pilin_N PF07790.11 gi|449068193|ref|YP_007435275.1| - 0.0078 17.1 0.8 0.017 16.0 0.4 1.8 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal CD34_antigen PF06365.12 gi|449068193|ref|YP_007435275.1| - 0.02 14.5 0.8 0.031 13.9 0.8 1.3 1 0 0 1 1 1 0 CD34/Podocalyxin family DUF237 PF03072.14 gi|449068193|ref|YP_007435275.1| - 0.051 13.6 0.2 1.7 8.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF237) Zip PF02535.22 gi|449068194|ref|YP_007435276.1| - 0.0014 17.9 6.8 0.0014 17.9 6.8 2.5 2 1 0 3 3 3 2 ZIP Zinc transporter Flavin_Reduct PF01613.18 gi|449068195|ref|YP_007435277.1| - 2.1e-29 102.5 0.0 2.4e-29 102.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain LigB PF02900.18 gi|449068196|ref|YP_007435278.1| - 5.2e-35 120.8 0.0 5.9e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Memo PF01875.17 gi|449068196|ref|YP_007435278.1| - 0.0019 17.4 0.0 0.0048 16.1 0.0 1.7 1 1 0 1 1 1 1 Memo-like protein Ta0938 PF11494.8 gi|449068197|ref|YP_007435279.1| - 1.1e-57 192.7 4.0 1.3e-57 192.6 4.0 1.0 1 0 0 1 1 1 1 Ta0938 YHS PF04945.13 gi|449068197|ref|YP_007435279.1| - 0.74 10.0 3.3 0.47 10.6 0.4 1.9 2 0 0 2 2 2 0 YHS domain TENA_THI-4 PF03070.16 gi|449068198|ref|YP_007435280.1| - 4.7e-48 163.8 0.1 6.4e-48 163.4 0.1 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family zf-C2H2_9 PF16293.5 gi|449068198|ref|YP_007435280.1| - 3.6e-30 103.6 1.2 1.1e-29 102.0 1.1 1.9 2 0 0 2 2 2 1 C2H2 type zinc-finger (1 copy) Haem_oxygenas_2 PF14518.6 gi|449068198|ref|YP_007435280.1| - 2.4e-16 60.0 0.2 4.6e-16 59.1 0.1 1.5 2 0 0 2 2 2 1 Iron-containing redox enzyme Amidohydro_2 PF04909.14 gi|449068199|ref|YP_007435281.1| - 4e-26 92.5 0.0 4.6e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.20 gi|449068199|ref|YP_007435281.1| - 0.022 14.1 0.0 0.059 12.7 0.0 1.6 1 1 0 1 1 1 0 Amidohydrolase family TatD_DNase PF01026.21 gi|449068199|ref|YP_007435281.1| - 0.22 10.9 0.0 1.1 8.6 0.0 1.9 1 1 0 1 1 1 0 TatD related DNase Amidohydro_2 PF04909.14 gi|449068200|ref|YP_007435282.1| - 1.8e-28 100.2 0.1 3.1e-28 99.4 0.0 1.4 2 0 0 2 2 2 1 Amidohydrolase FAD_binding_5 PF00941.21 gi|449068201|ref|YP_007435283.1| - 1.2e-49 168.4 0.0 1.9e-49 167.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase Fer2_2 PF01799.20 gi|449068201|ref|YP_007435283.1| - 1.1e-20 73.4 0.3 2.4e-20 72.3 0.3 1.6 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|449068201|ref|YP_007435283.1| - 1.8e-07 31.0 0.6 4.9e-07 29.6 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain CO_deh_flav_C PF03450.17 gi|449068201|ref|YP_007435283.1| - 2e-07 31.1 0.2 1.2e-06 28.6 0.0 2.3 2 1 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_3 PF13085.6 gi|449068201|ref|YP_007435283.1| - 4.3e-06 26.7 0.2 1.8e-05 24.7 0.3 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|449068202|ref|YP_007435284.1| - 1.6e-125 419.7 0.0 1.9e-125 419.4 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449068202|ref|YP_007435284.1| - 1.2e-11 44.9 0.0 2.3e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer4_11 PF13247.6 gi|449068204|ref|YP_007435286.1| - 3.1e-13 49.7 1.2 4.5e-13 49.2 1.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449068204|ref|YP_007435286.1| - 1.7e-11 43.4 18.4 1.2e-07 31.2 3.0 4.0 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|449068204|ref|YP_007435286.1| - 3.4e-09 36.4 15.9 5.3e-07 29.4 2.1 3.5 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|449068204|ref|YP_007435286.1| - 8.7e-08 32.6 22.4 6e-06 26.8 9.0 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449068204|ref|YP_007435286.1| - 2.6e-07 30.7 16.3 0.00012 22.2 6.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|449068204|ref|YP_007435286.1| - 9.9e-06 25.6 18.6 0.00019 21.5 2.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449068204|ref|YP_007435286.1| - 1.1e-05 25.2 1.5 1.1e-05 25.2 1.5 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|449068204|ref|YP_007435286.1| - 1.9e-05 24.6 8.5 1.9e-05 24.6 8.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449068204|ref|YP_007435286.1| - 4.3e-05 24.3 11.9 0.44 11.5 0.2 3.8 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain DmsC PF04976.12 gi|449068204|ref|YP_007435286.1| - 0.00071 19.1 8.1 0.0054 16.3 7.9 2.1 1 1 0 1 1 1 1 DMSO reductase anchor subunit (DmsC) Fer4_3 PF12798.7 gi|449068204|ref|YP_007435286.1| - 0.0012 19.7 18.1 0.042 14.8 2.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449068204|ref|YP_007435286.1| - 0.0014 18.9 2.9 0.0014 18.9 2.9 2.8 3 1 0 3 3 3 1 4Fe-4S binding domain DUF997 PF06196.12 gi|449068204|ref|YP_007435286.1| - 0.12 12.4 5.8 0.16 12.0 0.1 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF997) Fer4_8 PF13183.6 gi|449068204|ref|YP_007435286.1| - 0.47 10.9 9.8 0.48 10.9 2.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|449068204|ref|YP_007435286.1| - 1 10.0 10.1 0.19 12.3 3.2 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|449068204|ref|YP_007435286.1| - 2.1 9.0 10.7 0.51 10.9 2.7 2.7 1 1 3 4 4 4 0 4Fe-4S dicluster domain POR PF01558.18 gi|449068205|ref|YP_007435287.1| - 5.2e-35 121.1 0.1 8.8e-35 120.4 0.1 1.3 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|449068206|ref|YP_007435288.1| - 1e-15 56.8 14.3 1.2e-08 34.4 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|449068206|ref|YP_007435288.1| - 1.3e-12 47.2 13.2 2.8e-06 27.2 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449068206|ref|YP_007435288.1| - 9.2e-12 44.9 9.2 1.3e-11 44.4 9.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449068206|ref|YP_007435288.1| - 3.9e-10 39.7 21.6 3.3e-07 30.3 11.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|449068206|ref|YP_007435288.1| - 5.6e-10 38.7 12.2 8.3e-05 22.5 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|449068206|ref|YP_007435288.1| - 5.6e-10 39.6 23.1 2.2e-08 34.6 12.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449068206|ref|YP_007435288.1| - 1.1e-08 35.1 10.6 1.4e-08 34.7 10.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449068206|ref|YP_007435288.1| - 4.5e-08 33.9 10.1 0.00055 20.8 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|449068206|ref|YP_007435288.1| - 6e-07 29.5 13.3 0.00072 19.9 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|449068206|ref|YP_007435288.1| - 2.2e-06 28.1 7.9 0.00093 19.7 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|449068206|ref|YP_007435288.1| - 4.7e-05 24.0 10.4 0.077 13.7 0.4 3.0 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|449068206|ref|YP_007435288.1| - 0.00011 22.6 7.2 0.039 14.5 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|449068206|ref|YP_007435288.1| - 0.00017 22.0 13.3 0.069 13.6 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|449068206|ref|YP_007435288.1| - 0.0012 19.6 9.2 0.22 12.4 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|449068206|ref|YP_007435288.1| - 0.0025 18.6 18.7 0.082 13.9 7.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|449068206|ref|YP_007435288.1| - 0.57 10.4 11.1 13 6.0 3.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|449068207|ref|YP_007435289.1| - 3.2e-68 229.9 0.2 4e-68 229.6 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|449068207|ref|YP_007435289.1| - 5.5e-27 94.1 0.1 1.2e-26 92.9 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|449068207|ref|YP_007435289.1| - 0.00013 21.8 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|449068207|ref|YP_007435289.1| - 0.00073 19.2 0.1 0.0019 17.8 0.2 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449068208|ref|YP_007435290.1| - 1.2e-23 83.6 0.2 1.9e-23 82.9 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|449068208|ref|YP_007435290.1| - 0.00025 20.1 0.3 0.00038 19.5 0.3 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|449068208|ref|YP_007435290.1| - 0.00053 19.3 0.3 0.0011 18.2 0.3 1.6 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase CGGC PF08821.11 gi|449068208|ref|YP_007435290.1| - 0.084 13.1 0.1 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 CGGC domain Aldo_ket_red PF00248.21 gi|449068209|ref|YP_007435291.1| - 1.2e-60 205.2 0.1 7.2e-59 199.4 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family TPP_enzyme_N PF02776.18 gi|449068210|ref|YP_007435292.1| - 4.7e-43 146.8 0.0 8.7e-42 142.6 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449068210|ref|YP_007435292.1| - 4.2e-34 117.5 0.4 6.3e-33 113.7 0.1 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|449068210|ref|YP_007435292.1| - 4.9e-22 78.2 0.0 1.2e-21 76.9 0.0 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF1404 PF07185.11 gi|449068211|ref|YP_007435293.1| - 3.3e-65 218.9 21.7 3.7e-65 218.7 21.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) PIG-Y PF15159.6 gi|449068213|ref|YP_007435295.1| - 4.3 8.3 16.9 0.57 11.2 2.5 2.9 2 1 1 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y Phage_holin_8 PF16931.5 gi|449068213|ref|YP_007435295.1| - 9 6.3 12.4 1.4 8.9 3.1 2.4 1 1 1 2 2 2 0 Putative phage holin COX2 PF00116.20 gi|449068214|ref|YP_007435296.1| - 2.6e-13 49.9 0.2 2.4e-12 46.8 0.0 2.1 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|449068214|ref|YP_007435296.1| - 2.5e-06 27.5 0.0 3.4e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain DUF2436 PF10365.9 gi|449068214|ref|YP_007435296.1| - 0.067 12.9 0.2 0.11 12.2 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF2436) Cytochrom_B_N_2 PF13631.6 gi|449068215|ref|YP_007435297.1| - 6.8e-28 97.8 6.2 6.8e-28 97.8 6.2 2.4 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|449068215|ref|YP_007435297.1| - 3.3e-22 79.2 12.2 3.3e-22 79.2 12.2 2.2 2 0 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|449068215|ref|YP_007435297.1| - 0.0013 19.0 1.9 0.0013 19.0 1.9 3.3 3 1 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD Neur_chan_memb PF02932.16 gi|449068215|ref|YP_007435297.1| - 1.3 9.0 4.7 0.55 10.2 1.9 1.8 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region Rieske PF00355.26 gi|449068216|ref|YP_007435298.1| - 8.4e-13 48.1 0.0 1.4e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|449068216|ref|YP_007435298.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SoxE PF06525.11 gi|449068217|ref|YP_007435299.1| - 3.1e-73 244.1 7.2 4.8e-73 243.5 7.2 1.3 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain Cu-oxidase_2 PF07731.14 gi|449068217|ref|YP_007435299.1| - 0.015 15.0 0.1 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 Multicopper oxidase Copper-bind PF00127.20 gi|449068217|ref|YP_007435299.1| - 0.041 14.3 0.0 0.084 13.3 0.0 1.6 1 1 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family DUF2749 PF10907.8 gi|449068217|ref|YP_007435299.1| - 0.065 13.4 4.1 24 5.2 1.2 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF2749) COX1 PF00115.20 gi|449068218|ref|YP_007435300.1| - 2.1e-124 415.7 56.8 2.1e-124 415.7 56.8 2.9 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|449068218|ref|YP_007435300.1| - 2.6e-17 63.5 15.5 2.6e-17 63.5 15.5 2.5 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III DUF1404 PF07185.11 gi|449068219|ref|YP_007435301.1| - 3.3e-54 183.1 24.8 4e-54 182.8 24.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.10 gi|449068219|ref|YP_007435301.1| - 0.0012 18.3 12.7 0.0012 18.3 12.7 2.0 1 1 1 2 2 2 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) RNA_pol_Rpc34 PF05158.12 gi|449068221|ref|YP_007435303.1| - 0.00012 21.6 0.1 0.00013 21.5 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_34 PF13601.6 gi|449068221|ref|YP_007435303.1| - 0.0017 18.5 0.1 0.0021 18.2 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|449068221|ref|YP_007435303.1| - 0.0043 16.9 0.6 0.0049 16.7 0.6 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_micro PF17007.5 gi|449068221|ref|YP_007435303.1| - 0.0066 15.3 0.3 0.0067 15.3 0.3 1.1 1 0 0 1 1 1 1 HTH-like TFIIE_alpha PF02002.17 gi|449068221|ref|YP_007435303.1| - 0.0066 16.3 0.3 0.0075 16.1 0.3 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|449068221|ref|YP_007435303.1| - 0.0077 16.1 1.2 0.017 15.0 1.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|449068221|ref|YP_007435303.1| - 0.055 13.4 0.0 0.062 13.2 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|449068221|ref|YP_007435303.1| - 0.077 12.6 0.2 0.12 12.0 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|449068221|ref|YP_007435303.1| - 0.11 12.4 0.7 0.16 11.9 0.7 1.1 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|449068221|ref|YP_007435303.1| - 0.12 12.9 0.1 0.13 12.8 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_43 PF09904.9 gi|449068221|ref|YP_007435303.1| - 0.12 12.3 0.1 0.15 12.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Rhodanese PF00581.20 gi|449068222|ref|YP_007435304.1| - 4.9e-12 46.3 0.0 8.2e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain Ste5_C PF12194.8 gi|449068223|ref|YP_007435305.1| - 0.06 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein kinase Fus3-binding FAD_binding_5 PF00941.21 gi|449068224|ref|YP_007435306.1| - 4.1e-51 173.1 0.0 6.2e-51 172.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|449068224|ref|YP_007435306.1| - 5e-26 90.9 0.0 9.9e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 gi|449068225|ref|YP_007435307.1| - 1.6e-29 101.7 0.1 1.6e-29 101.7 0.1 1.9 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|449068225|ref|YP_007435307.1| - 4.7e-05 23.3 2.7 0.00012 21.9 0.4 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|449068225|ref|YP_007435307.1| - 0.00036 20.5 2.2 0.00036 20.5 2.2 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Gly_rich_SFCGS PF14272.6 gi|449068225|ref|YP_007435307.1| - 0.1 12.6 0.1 0.78 9.8 0.0 2.0 1 1 1 2 2 2 0 Glycine-rich SFCGS Ald_Xan_dh_C2 PF02738.18 gi|449068226|ref|YP_007435308.1| - 1.2e-154 515.8 0.0 1.5e-154 515.5 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|449068226|ref|YP_007435308.1| - 2.7e-23 82.4 0.0 8.4e-23 80.8 0.0 1.9 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Rubrerythrin PF02915.17 gi|449068227|ref|YP_007435309.1| - 2.9e-26 92.5 3.3 5.1e-26 91.7 3.3 1.4 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|449068227|ref|YP_007435309.1| - 3.7e-11 43.1 1.8 4.4e-05 23.4 0.0 2.1 1 1 1 2 2 2 2 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|449068227|ref|YP_007435309.1| - 0.0077 15.1 0.0 0.1 11.4 0.0 1.9 1 1 1 2 2 2 1 Fatty acid desaturase COQ7 PF03232.13 gi|449068227|ref|YP_007435309.1| - 0.037 13.8 1.0 6.3 6.6 0.1 2.0 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 MOR2-PAG1_C PF14225.6 gi|449068227|ref|YP_007435309.1| - 0.11 12.3 0.0 3.7 7.3 0.0 2.1 2 0 0 2 2 2 0 Cell morphogenesis C-terminal Ferritin_2 PF13668.6 gi|449068227|ref|YP_007435309.1| - 0.25 11.5 2.3 12 6.1 0.3 2.1 1 1 1 2 2 2 0 Ferritin-like domain CCG PF02754.16 gi|449068228|ref|YP_007435310.1| - 8.1e-19 67.6 2.4 8.7e-11 41.9 0.0 3.1 3 1 1 4 4 4 2 Cysteine-rich domain Fer4_7 PF12838.7 gi|449068228|ref|YP_007435310.1| - 3.9e-05 24.2 5.6 0.00013 22.5 5.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|449068228|ref|YP_007435310.1| - 9.8e-05 22.8 7.6 0.00059 20.3 7.6 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|449068228|ref|YP_007435310.1| - 0.00014 21.9 5.1 0.00033 20.7 5.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|449068228|ref|YP_007435310.1| - 0.0015 18.9 13.0 0.017 15.6 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|449068228|ref|YP_007435310.1| - 0.003 18.0 10.9 0.045 14.2 11.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|449068228|ref|YP_007435310.1| - 0.016 15.0 13.3 0.27 11.1 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|449068228|ref|YP_007435310.1| - 0.063 14.2 5.8 3.9 8.5 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|449068228|ref|YP_007435310.1| - 0.14 12.3 10.3 0.13 12.4 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain ATP-synt_ab_C PF00306.27 gi|449068228|ref|YP_007435310.1| - 0.19 12.0 0.3 40 4.5 0.1 2.9 3 0 0 3 3 3 0 ATP synthase alpha/beta chain, C terminal domain Fer4_6 PF12837.7 gi|449068228|ref|YP_007435310.1| - 0.32 11.1 14.4 0.47 10.6 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|449068228|ref|YP_007435310.1| - 0.42 10.8 12.9 1.6 8.9 2.4 2.5 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|449068228|ref|YP_007435310.1| - 1.1 9.5 13.0 23 5.2 2.9 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF3501 PF12007.8 gi|449068229|ref|YP_007435311.1| - 2.6e-44 151.5 0.0 2.9e-44 151.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) COMP PF11598.8 gi|449068229|ref|YP_007435311.1| - 0.13 12.8 0.1 0.3 11.6 0.1 1.6 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein CorA PF01544.18 gi|449068230|ref|YP_007435312.1| - 3.4e-14 52.9 2.6 7.7e-14 51.7 2.6 1.6 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein AnfO_nitrog PF09582.10 gi|449068230|ref|YP_007435312.1| - 0.075 12.4 0.1 0.11 11.9 0.1 1.4 1 1 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) MetOD2 PF18548.1 gi|449068230|ref|YP_007435312.1| - 0.17 12.0 1.2 0.22 11.7 0.3 1.7 2 0 0 2 2 2 0 Metanogen output domain 2 AIRS_C PF02769.22 gi|449068231|ref|YP_007435313.1| - 1.6e-15 57.6 0.0 2.7e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|449068231|ref|YP_007435313.1| - 1.8e-11 44.6 0.0 3.3e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GA-like PF17573.2 gi|449068231|ref|YP_007435313.1| - 0.13 12.2 0.4 0.29 11.1 0.4 1.5 1 0 0 1 1 1 0 GA-like domain Pro-kuma_activ PF09286.11 gi|449068232|ref|YP_007435314.1| - 2.4e-25 89.5 0.2 5.7e-25 88.3 0.2 1.7 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Big_7 PF17957.1 gi|449068232|ref|YP_007435314.1| - 4.9e-09 36.8 2.1 4.9e-09 36.8 2.1 6.8 7 0 0 7 7 7 1 Bacterial Ig domain TcfC PF16967.5 gi|449068232|ref|YP_007435314.1| - 0.00027 20.4 0.3 0.001 18.5 0.3 2.0 1 0 0 1 1 1 1 E-set like domain MG2 PF01835.19 gi|449068232|ref|YP_007435314.1| - 0.0053 17.2 0.3 1.7 9.2 0.0 4.0 4 0 0 4 4 4 1 MG2 domain DJ-1_PfpI PF01965.24 gi|449068233|ref|YP_007435315.1| - 3.1e-52 176.7 0.0 3.4e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|449068233|ref|YP_007435315.1| - 0.0048 16.7 0.0 0.0059 16.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|449068233|ref|YP_007435315.1| - 0.028 14.2 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 ThiJ_like PF17124.5 gi|449068233|ref|YP_007435315.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 ThiJ/PfpI family-like TPP_enzyme_N PF02776.18 gi|449068236|ref|YP_007435318.1| - 1.5e-39 135.3 0.0 2.7e-39 134.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449068236|ref|YP_007435318.1| - 5e-18 65.3 0.3 1.3e-16 60.7 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|449068236|ref|YP_007435318.1| - 9e-05 22.2 0.0 0.0021 17.8 0.0 2.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DXP_synthase_N PF13292.6 gi|449068236|ref|YP_007435318.1| - 0.11 11.7 0.0 1.6 7.9 0.0 2.2 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Sugar_tr PF00083.24 gi|449068237|ref|YP_007435319.1| - 7.5e-32 110.8 31.6 3.5e-24 85.5 11.4 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|449068237|ref|YP_007435319.1| - 9.1e-26 90.6 63.7 1e-19 70.7 30.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily TENA_THI-4 PF03070.16 gi|449068238|ref|YP_007435320.1| - 2.8e-15 56.7 0.2 2.7e-14 53.5 0.2 2.4 1 1 0 1 1 1 1 TENA/THI-4/PQQC family Acetyltransf_1 PF00583.25 gi|449068239|ref|YP_007435321.1| - 1.8e-12 47.5 0.0 2.3e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|449068239|ref|YP_007435321.1| - 6.5e-09 36.6 0.0 9.2e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|449068239|ref|YP_007435321.1| - 8.9e-08 32.1 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|449068239|ref|YP_007435321.1| - 2.4e-07 31.1 0.0 4.8e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|449068239|ref|YP_007435321.1| - 1.9e-06 27.7 0.0 3.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|449068239|ref|YP_007435321.1| - 0.00083 19.4 0.2 0.054 13.6 0.2 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain SinI PF08671.10 gi|449068239|ref|YP_007435321.1| - 0.0075 16.0 0.4 0.013 15.3 0.4 1.4 1 0 0 1 1 1 1 Anti-repressor SinI GNAT_acetyltran PF12746.7 gi|449068239|ref|YP_007435321.1| - 0.03 13.9 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_4 PF13420.7 gi|449068239|ref|YP_007435321.1| - 0.082 13.0 0.1 0.23 11.6 0.1 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|449068239|ref|YP_007435321.1| - 0.12 12.5 0.0 0.33 11.1 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase ECH_1 PF00378.20 gi|449068240|ref|YP_007435322.1| - 1e-48 165.9 0.0 1.1e-48 165.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|449068240|ref|YP_007435322.1| - 2e-26 93.3 0.0 2e-23 83.4 0.0 2.1 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 gi|449068241|ref|YP_007435323.1| - 1.2e-82 277.1 0.2 1.3e-82 276.9 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|449068241|ref|YP_007435323.1| - 9.5e-39 133.8 0.7 4.6e-35 121.7 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|449068241|ref|YP_007435323.1| - 0.00023 21.2 0.2 0.002 18.1 0.1 2.2 2 0 0 2 2 2 1 Peptidase family S49 VapB_antitoxin PF09957.9 gi|449068241|ref|YP_007435323.1| - 0.067 13.1 1.7 1.9 8.4 0.6 3.2 2 1 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB Pyr_redox_2 PF07992.14 gi|449068242|ref|YP_007435324.1| - 1.1e-58 198.8 0.0 1.3e-58 198.6 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449068242|ref|YP_007435324.1| - 2.1e-19 69.8 0.1 9.2e-17 61.4 0.2 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.6 gi|449068242|ref|YP_007435324.1| - 4.3e-13 49.6 0.0 8e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Reductase C-terminal Pyr_redox_3 PF13738.6 gi|449068242|ref|YP_007435324.1| - 7.7e-11 41.8 0.9 2e-10 40.4 0.3 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|449068242|ref|YP_007435324.1| - 0.00032 19.9 0.0 0.16 11.1 0.0 2.3 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|449068242|ref|YP_007435324.1| - 0.00039 19.6 0.4 0.061 12.4 0.0 3.1 2 1 1 3 3 3 1 Lycopene cyclase protein DAO PF01266.24 gi|449068242|ref|YP_007435324.1| - 0.00092 18.9 1.2 1.6 8.3 0.0 3.3 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|449068242|ref|YP_007435324.1| - 0.00094 18.0 0.5 1.3 7.7 0.0 3.0 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|449068242|ref|YP_007435324.1| - 0.0021 18.1 2.2 30 4.6 0.0 4.1 2 2 0 4 4 4 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|449068242|ref|YP_007435324.1| - 0.005 16.1 0.0 1.4 8.1 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|449068242|ref|YP_007435324.1| - 0.0056 16.1 0.0 0.094 12.1 0.0 2.1 2 0 0 2 2 2 1 ThiF family AdoHcyase_NAD PF00670.21 gi|449068242|ref|YP_007435324.1| - 0.0065 16.6 0.1 0.28 11.2 0.0 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_8 PF13450.6 gi|449068242|ref|YP_007435324.1| - 0.011 16.0 0.3 0.5 10.6 0.0 2.9 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|449068242|ref|YP_007435324.1| - 0.024 13.8 2.8 5.8 5.9 0.1 3.8 3 1 1 4 4 4 0 Glucose inhibited division protein A TrkA_N PF02254.18 gi|449068242|ref|YP_007435324.1| - 0.054 13.7 0.1 3.7 7.8 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|449068242|ref|YP_007435324.1| - 0.14 11.5 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thiolase_N PF00108.23 gi|449068243|ref|YP_007435325.1| - 2.5e-21 76.2 0.4 5.1e-20 71.9 0.4 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|449068243|ref|YP_007435325.1| - 8e-10 38.4 0.2 1.2e-08 34.6 0.0 2.6 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|449068243|ref|YP_007435325.1| - 2.7e-06 27.1 4.5 0.00088 18.9 2.6 2.5 1 1 1 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|449068243|ref|YP_007435325.1| - 0.062 13.2 0.7 0.13 12.1 0.7 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|449068243|ref|YP_007435325.1| - 1.2 9.2 7.3 6.3 6.8 0.0 3.7 5 0 0 5 5 5 0 Beta-ketoacyl synthase, C-terminal domain 4HBT PF03061.22 gi|449068244|ref|YP_007435326.1| - 7.9e-11 42.2 0.0 1.3e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|449068244|ref|YP_007435326.1| - 3e-05 24.2 0.0 4.4e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|449068244|ref|YP_007435326.1| - 0.0058 16.9 0.0 0.0071 16.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily INCA1 PF15142.6 gi|449068244|ref|YP_007435326.1| - 0.021 14.9 0.0 0.089 12.8 0.0 2.0 2 1 1 3 3 3 0 INCA1 Acyl-ACP_TE PF01643.17 gi|449068244|ref|YP_007435326.1| - 0.053 12.8 0.0 0.06 12.6 0.0 1.2 1 1 0 1 1 1 0 Acyl-ACP thioesterase AMP-binding_C_2 PF14535.6 gi|449068245|ref|YP_007435327.1| - 1e-15 57.8 0.6 2.6e-15 56.5 0.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|449068245|ref|YP_007435327.1| - 2.4e-13 49.5 0.0 3.3e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.13 gi|449068245|ref|YP_007435327.1| - 1.3e-05 24.3 0.3 0.087 11.7 0.1 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter OB_aCoA_assoc PF01796.17 gi|449068246|ref|YP_007435328.1| - 5.4e-14 51.9 0.1 8.8e-14 51.3 0.1 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|449068246|ref|YP_007435328.1| - 1.8e-12 46.9 0.0 2.9e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TFIIS_C PF01096.18 gi|449068246|ref|YP_007435328.1| - 0.0034 17.2 0.3 0.33 10.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) NOB1_Zn_bind PF08772.11 gi|449068246|ref|YP_007435328.1| - 0.0037 17.4 0.0 0.0055 16.8 0.0 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like TackOD1 PF18551.1 gi|449068246|ref|YP_007435328.1| - 0.039 13.6 0.2 0.052 13.2 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Rubrerythrin PF02915.17 gi|449068247|ref|YP_007435329.1| - 2e-05 25.0 0.2 6.2e-05 23.4 0.1 1.9 2 0 0 2 2 2 1 Rubrerythrin FA_desaturase_2 PF03405.14 gi|449068247|ref|YP_007435329.1| - 0.00067 18.6 0.1 0.4 9.5 0.1 2.2 2 0 0 2 2 2 2 Fatty acid desaturase AurF PF11583.8 gi|449068247|ref|YP_007435329.1| - 0.00069 19.0 1.5 0.001 18.4 0.0 2.0 2 1 0 2 2 2 1 P-aminobenzoate N-oxygenase AurF DUF4932 PF16286.5 gi|449068247|ref|YP_007435329.1| - 0.011 15.0 0.4 0.015 14.6 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4932) HpaB_N PF11794.8 gi|449068248|ref|YP_007435330.1| - 7.6e-84 281.6 0.0 1e-83 281.2 0.0 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|449068248|ref|YP_007435330.1| - 1.9e-52 177.3 0.0 3.1e-52 176.6 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Glyoxalase PF00903.25 gi|449068249|ref|YP_007435331.1| - 2.5e-23 82.7 0.7 6.7e-11 42.5 0.1 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|449068249|ref|YP_007435331.1| - 1.4e-06 28.6 0.0 0.49 10.7 0.0 3.5 2 2 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|449068249|ref|YP_007435331.1| - 0.0014 18.7 0.3 0.079 13.1 0.0 3.1 1 1 2 4 4 4 1 Glyoxalase-like domain Pfk_N PF18468.1 gi|449068249|ref|YP_007435331.1| - 0.035 14.5 0.1 0.096 13.1 0.1 1.8 1 0 0 1 1 1 0 Phosphofructokinase N-terminal domain yeast Glyoxalase_6 PF18029.1 gi|449068249|ref|YP_007435331.1| - 0.14 12.9 0.0 1.5 9.6 0.0 2.2 2 1 0 2 2 2 0 Glyoxalase-like domain HTH_10 PF04967.12 gi|449068250|ref|YP_007435332.1| - 5.1e-20 71.0 0.1 9.8e-20 70.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|449068250|ref|YP_007435332.1| - 0.016 14.8 0.1 1.2 8.7 0.0 3.0 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF1492 PF07374.11 gi|449068250|ref|YP_007435332.1| - 0.021 15.0 0.2 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) Homeodomain PF00046.29 gi|449068250|ref|YP_007435332.1| - 0.035 14.0 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain Pirin PF02678.16 gi|449068251|ref|YP_007435333.1| - 9.4e-36 122.1 0.1 3.6e-35 120.2 0.0 1.9 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.13 gi|449068251|ref|YP_007435333.1| - 6.2e-24 84.4 0.0 1.4e-23 83.2 0.0 1.6 2 0 0 2 2 2 1 Pirin C-terminal cupin domain AMP-binding PF00501.28 gi|449068252|ref|YP_007435334.1| - 1.9e-63 214.6 0.0 2.4e-63 214.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|449068252|ref|YP_007435334.1| - 2e-18 67.1 0.0 4.3e-18 66.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|449068252|ref|YP_007435334.1| - 8.1e-10 38.5 0.8 8.1e-10 38.5 0.8 2.4 2 1 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Pterin_4a PF01329.19 gi|449068253|ref|YP_007435335.1| - 2.8e-30 104.3 0.0 3e-30 104.2 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase DUF1965 PF09248.10 gi|449068253|ref|YP_007435335.1| - 0.1 12.4 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) Oxidored_FMN PF00724.20 gi|449068254|ref|YP_007435336.1| - 1.3e-58 199.0 0.0 1.9e-58 198.4 0.0 1.2 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family NAD_binding_8 PF13450.6 gi|449068254|ref|YP_007435336.1| - 3e-09 37.0 0.0 8e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|449068254|ref|YP_007435336.1| - 9.6e-09 34.9 0.0 1.8e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|449068254|ref|YP_007435336.1| - 2e-08 34.6 0.5 5.2e-07 30.1 0.3 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|449068254|ref|YP_007435336.1| - 3.1e-05 23.7 0.0 0.00045 19.9 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Dus PF01207.17 gi|449068254|ref|YP_007435336.1| - 0.00064 18.9 0.0 0.018 14.1 0.0 2.7 2 1 1 3 3 3 2 Dihydrouridine synthase (Dus) HI0933_like PF03486.14 gi|449068254|ref|YP_007435336.1| - 0.0025 16.6 0.1 0.029 13.1 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|449068254|ref|YP_007435336.1| - 0.0033 16.7 0.2 0.0049 16.2 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|449068254|ref|YP_007435336.1| - 0.0034 17.3 0.0 0.0059 16.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|449068254|ref|YP_007435336.1| - 0.0039 16.5 0.0 0.0064 15.8 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|449068254|ref|YP_007435336.1| - 0.0054 16.0 0.0 0.0098 15.2 0.0 1.3 1 0 0 1 1 1 1 Thi4 family BtpA PF03437.15 gi|449068254|ref|YP_007435336.1| - 0.0054 16.2 0.0 0.048 13.1 0.0 2.2 2 0 0 2 2 2 1 BtpA family GIDA PF01134.22 gi|449068254|ref|YP_007435336.1| - 0.0068 15.5 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|449068254|ref|YP_007435336.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|449068254|ref|YP_007435336.1| - 0.028 13.7 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|449068254|ref|YP_007435336.1| - 0.034 14.1 0.0 0.11 12.5 0.0 1.9 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.7 gi|449068254|ref|YP_007435336.1| - 0.18 11.1 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|449068254|ref|YP_007435336.1| - 0.2 10.7 0.1 0.3 10.1 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Tricorn_PDZ PF14685.6 gi|449068255|ref|YP_007435337.1| - 3.4e-24 84.6 0.0 1e-23 83.1 0.0 1.9 1 0 0 1 1 1 1 Tricorn protease PDZ domain Tricorn_C1 PF14684.6 gi|449068255|ref|YP_007435337.1| - 6.5e-23 80.6 2.6 2e-22 79.0 2.6 1.9 1 0 0 1 1 1 1 Tricorn protease C1 domain Peptidase_S41 PF03572.18 gi|449068255|ref|YP_007435337.1| - 6.7e-22 77.8 0.0 1.4e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 Peptidase family S41 PD40 PF07676.12 gi|449068255|ref|YP_007435337.1| - 1.4e-12 47.1 14.2 2.4e-05 24.1 1.2 5.8 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|449068255|ref|YP_007435337.1| - 0.0001 21.2 0.4 0.17 10.6 0.0 4.2 3 2 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region PDZ_2 PF13180.6 gi|449068255|ref|YP_007435337.1| - 0.0091 16.3 0.0 0.038 14.3 0.0 2.1 1 1 0 1 1 1 1 PDZ domain ABC_tran PF00005.27 gi|449068256|ref|YP_007435338.1| - 4.3e-24 85.6 0.1 9.2e-24 84.5 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|449068256|ref|YP_007435338.1| - 4.3e-13 49.8 0.0 1.6e-08 34.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|449068256|ref|YP_007435338.1| - 0.00035 20.1 0.3 0.24 10.8 0.0 2.2 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|449068256|ref|YP_007435338.1| - 0.0022 18.4 0.2 0.008 16.6 0.0 2.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|449068256|ref|YP_007435338.1| - 0.018 14.8 0.3 0.035 13.9 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|449068256|ref|YP_007435338.1| - 0.022 15.3 0.3 0.027 15.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|449068256|ref|YP_007435338.1| - 0.022 14.5 0.0 1.5 8.5 0.2 2.3 1 1 1 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 gi|449068256|ref|YP_007435338.1| - 0.032 14.2 0.1 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|449068256|ref|YP_007435338.1| - 0.032 13.4 0.5 0.16 11.2 0.0 2.0 2 1 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|449068256|ref|YP_007435338.1| - 0.036 14.5 0.0 0.05 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|449068256|ref|YP_007435338.1| - 0.037 13.9 0.5 0.073 13.0 0.1 1.7 2 0 0 2 2 2 0 RsgA GTPase DUF4959 PF16323.5 gi|449068256|ref|YP_007435338.1| - 0.045 14.1 0.1 0.083 13.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4959) AAA_13 PF13166.6 gi|449068256|ref|YP_007435338.1| - 0.06 12.0 0.1 0.087 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|449068256|ref|YP_007435338.1| - 0.069 13.4 0.0 0.75 10.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|449068256|ref|YP_007435338.1| - 0.095 12.8 1.0 0.37 10.8 0.2 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_22 PF13401.6 gi|449068256|ref|YP_007435338.1| - 0.13 12.6 0.1 0.32 11.3 0.1 1.8 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|449068256|ref|YP_007435338.1| - 0.13 12.2 0.2 0.53 10.2 0.1 2.0 2 0 0 2 2 2 0 NACHT domain NRIP1_repr_3 PF15689.5 gi|449068257|ref|YP_007435339.1| - 0.16 12.3 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 Nuclear receptor-interacting protein 1 repression 3 zf-ribbon_3 PF13248.6 gi|449068258|ref|YP_007435340.1| - 8.4e-05 21.8 1.3 0.28 10.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|449068258|ref|YP_007435340.1| - 0.00011 22.2 2.6 0.0045 17.0 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Elf1 PF05129.13 gi|449068258|ref|YP_007435340.1| - 0.0014 18.6 1.1 0.0016 18.5 1.1 1.0 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.10 gi|449068258|ref|YP_007435340.1| - 0.0042 17.2 0.9 0.0066 16.5 0.9 1.3 1 0 0 1 1 1 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|449068258|ref|YP_007435340.1| - 0.0052 16.6 0.2 0.0078 16.1 0.2 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn-C2H2_12 PF18112.1 gi|449068258|ref|YP_007435340.1| - 0.011 16.2 6.6 0.032 14.7 0.2 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C4_Topoisom PF01396.19 gi|449068258|ref|YP_007435340.1| - 0.017 14.9 3.2 0.11 12.3 0.8 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-H2C2_2 PF13465.6 gi|449068258|ref|YP_007435340.1| - 0.022 15.2 3.7 2.1 8.9 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain IBR PF01485.21 gi|449068258|ref|YP_007435340.1| - 0.022 15.0 1.0 0.027 14.7 1.0 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Nudix_N_2 PF14803.6 gi|449068258|ref|YP_007435340.1| - 0.025 14.5 0.7 0.037 14.0 0.7 1.4 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|449068258|ref|YP_007435340.1| - 0.028 14.4 3.2 0.067 13.1 3.2 1.7 1 1 0 1 1 1 0 zinc-ribbon domain YacG PF03884.14 gi|449068258|ref|YP_007435340.1| - 0.038 13.7 1.7 0.83 9.4 0.3 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG DUF2387 PF09526.10 gi|449068258|ref|YP_007435340.1| - 0.04 14.1 0.3 0.04 14.1 0.3 1.1 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ogr_Delta PF04606.12 gi|449068258|ref|YP_007435340.1| - 0.043 13.8 0.8 0.64 10.1 0.6 2.1 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger DUF2072 PF09845.9 gi|449068258|ref|YP_007435340.1| - 0.046 14.0 0.4 0.055 13.7 0.4 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-C2H2_4 PF13894.6 gi|449068258|ref|YP_007435340.1| - 0.05 14.5 2.2 1.5 9.8 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-TFIIB PF13453.6 gi|449068258|ref|YP_007435340.1| - 0.05 12.9 0.6 0.065 12.6 0.6 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_9 PF14369.6 gi|449068258|ref|YP_007435340.1| - 0.061 13.6 0.7 0.17 12.1 0.7 1.7 1 1 1 2 2 2 0 zinc-ribbon Auto_anti-p27 PF06677.12 gi|449068258|ref|YP_007435340.1| - 0.08 13.1 1.3 5.1 7.3 0.1 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Herpes_glycoH_C PF17488.2 gi|449068258|ref|YP_007435340.1| - 0.083 12.7 0.7 0.11 12.3 0.7 1.3 1 1 0 1 1 1 0 Herpesvirus glycoprotein H C-terminal domain DUF4451 PF14616.6 gi|449068258|ref|YP_007435340.1| - 0.1 12.8 2.0 1.8 8.8 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4451) zf-LITAF-like PF10601.9 gi|449068258|ref|YP_007435340.1| - 0.11 12.8 2.4 21 5.5 0.1 1.9 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zf_UBZ PF18439.1 gi|449068258|ref|YP_007435340.1| - 0.15 11.7 2.5 1.7 8.3 0.4 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|449068258|ref|YP_007435340.1| - 0.21 11.6 3.8 1.9 8.6 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|449068258|ref|YP_007435340.1| - 0.23 11.5 1.7 12 5.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Lar_restr_allev PF14354.6 gi|449068258|ref|YP_007435340.1| - 0.25 11.7 2.7 0.67 10.4 2.7 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf_C2H2_10 PF18414.1 gi|449068258|ref|YP_007435340.1| - 0.41 10.2 6.3 5.8 6.6 1.3 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger ADK_lid PF05191.14 gi|449068258|ref|YP_007435340.1| - 0.57 10.2 4.3 4.7 7.3 0.4 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|449068258|ref|YP_007435340.1| - 0.87 10.2 6.9 1.5 9.4 0.2 2.5 3 0 0 3 3 2 0 Zinc finger, C2H2 type ABC2_membrane_2 PF12679.7 gi|449068259|ref|YP_007435341.1| - 3.8e-16 59.2 28.9 2.2e-15 56.7 28.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|449068259|ref|YP_007435341.1| - 0.00027 21.0 20.4 0.00027 21.0 20.4 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|449068259|ref|YP_007435341.1| - 0.029 13.5 41.9 0.0048 16.0 37.8 1.6 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|449068260|ref|YP_007435342.1| - 2.3e-27 96.2 0.0 7.2e-27 94.6 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|449068260|ref|YP_007435342.1| - 8.1e-07 29.1 0.4 0.015 15.1 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|449068260|ref|YP_007435342.1| - 0.00017 22.3 0.4 0.00053 20.7 0.4 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|449068260|ref|YP_007435342.1| - 0.0068 16.1 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TsaE PF02367.17 gi|449068260|ref|YP_007435342.1| - 0.007 16.4 0.1 0.016 15.2 0.1 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|449068260|ref|YP_007435342.1| - 0.011 16.2 0.0 0.019 15.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|449068260|ref|YP_007435342.1| - 0.011 16.1 0.2 0.07 13.6 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|449068260|ref|YP_007435342.1| - 0.018 14.7 0.1 0.027 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|449068260|ref|YP_007435342.1| - 0.037 14.5 3.3 0.064 13.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|449068260|ref|YP_007435342.1| - 0.042 13.7 3.0 0.51 10.2 0.1 2.8 3 0 0 3 3 3 0 NTPase MeaB PF03308.16 gi|449068260|ref|YP_007435342.1| - 0.074 12.0 0.0 0.16 10.9 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RelA_SpoT PF04607.17 gi|449068260|ref|YP_007435342.1| - 0.11 12.8 0.4 0.29 11.4 0.4 1.8 1 1 0 1 1 1 0 Region found in RelA / SpoT proteins AAA_33 PF13671.6 gi|449068260|ref|YP_007435342.1| - 0.13 12.4 0.0 0.45 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain POR_N PF01855.19 gi|449068261|ref|YP_007435343.1| - 1.7e-58 198.1 0.0 3.1e-58 197.3 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|449068261|ref|YP_007435343.1| - 2e-34 119.2 1.1 5.5e-34 117.8 0.4 2.0 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|449068261|ref|YP_007435343.1| - 5e-11 42.8 0.5 7.2e-10 39.1 0.0 2.9 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|449068261|ref|YP_007435343.1| - 4.6e-08 33.0 0.1 1.4e-07 31.5 0.1 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|449068261|ref|YP_007435343.1| - 0.00034 20.3 0.4 0.0027 17.3 0.5 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|449068262|ref|YP_007435344.1| - 1.9e-31 108.9 0.2 3e-31 108.3 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|449068262|ref|YP_007435344.1| - 9e-25 86.6 0.3 2e-24 85.5 0.3 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal TBPIP PF07106.13 gi|449068263|ref|YP_007435345.1| - 0.0013 18.7 0.4 0.0019 18.1 0.4 1.2 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain TrmB PF01978.19 gi|449068263|ref|YP_007435345.1| - 0.037 13.9 1.2 0.074 13.0 0.2 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB preATP-grasp_3 PF18301.1 gi|449068263|ref|YP_007435345.1| - 0.086 13.1 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 pre ATP-grasp 3 domain DUF2785 PF10978.8 gi|449068263|ref|YP_007435345.1| - 0.12 12.1 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2785) RmlD_sub_bind PF04321.17 gi|449068265|ref|YP_007435347.1| - 3.7e-20 72.2 0.0 4.5e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|449068265|ref|YP_007435347.1| - 5.5e-05 22.7 0.0 7.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Methyltr_RsmB-F PF01189.17 gi|449068267|ref|YP_007435349.1| - 3.7e-31 108.3 0.1 1.3e-30 106.5 0.1 1.9 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|449068267|ref|YP_007435349.1| - 0.00074 19.3 0.2 0.0016 18.2 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|449068267|ref|YP_007435349.1| - 0.099 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain HxlR PF01638.17 gi|449068268|ref|YP_007435350.1| - 3.5e-18 65.2 0.1 4.3e-18 64.9 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|449068268|ref|YP_007435350.1| - 5e-06 26.3 0.0 6.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|449068268|ref|YP_007435350.1| - 0.00076 19.4 0.2 0.0012 18.7 0.2 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix RepL PF05732.11 gi|449068268|ref|YP_007435350.1| - 0.00092 18.7 0.2 0.0014 18.1 0.2 1.4 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_34 PF13601.6 gi|449068268|ref|YP_007435350.1| - 0.0018 18.4 0.0 0.0023 18.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|449068268|ref|YP_007435350.1| - 0.0075 16.2 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|449068268|ref|YP_007435350.1| - 0.024 14.2 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|449068268|ref|YP_007435350.1| - 0.028 14.3 0.0 0.042 13.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|449068268|ref|YP_007435350.1| - 0.037 14.5 0.0 0.051 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|449068268|ref|YP_007435350.1| - 0.068 13.1 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|449068268|ref|YP_007435350.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_43 PF09904.9 gi|449068268|ref|YP_007435350.1| - 0.16 12.0 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix ATP1G1_PLM_MAT8 PF02038.16 gi|449068269|ref|YP_007435351.1| - 0.0046 16.4 2.7 0.15 11.5 0.4 2.4 1 1 1 2 2 2 2 ATP1G1/PLM/MAT8 family PKD PF00801.20 gi|449068269|ref|YP_007435351.1| - 0.052 13.4 2.9 0.98 9.3 0.8 2.3 2 0 0 2 2 2 0 PKD domain DUF3040 PF11239.8 gi|449068269|ref|YP_007435351.1| - 0.067 13.5 1.4 0.12 12.6 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF11 PF01345.18 gi|449068269|ref|YP_007435351.1| - 0.72 10.2 6.2 0.2 12.0 1.7 2.0 1 1 1 2 2 2 0 Domain of unknown function DUF11 BACON PF13004.7 gi|449068269|ref|YP_007435351.1| - 4.1 7.5 9.3 30 4.7 9.3 2.2 1 1 0 1 1 1 0 Putative binding domain, N-terminal DUF3211 PF11485.8 gi|449068270|ref|YP_007435352.1| - 0.022 15.0 3.4 0.054 13.7 0.3 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3211) SpoVIF PF14069.6 gi|449068270|ref|YP_007435352.1| - 0.045 13.5 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Stage VI sporulation protein F T2SSE PF00437.20 gi|449068271|ref|YP_007435353.1| - 3.6e-44 150.9 0.0 6.1e-44 150.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|449068271|ref|YP_007435353.1| - 0.00096 19.7 0.0 0.0021 18.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter PCMT PF01135.19 gi|449068271|ref|YP_007435353.1| - 0.003 17.3 0.1 0.088 12.5 0.0 2.3 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AAA_16 PF13191.6 gi|449068271|ref|YP_007435353.1| - 0.0049 17.3 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|449068271|ref|YP_007435353.1| - 0.0068 15.4 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 gi|449068271|ref|YP_007435353.1| - 0.013 15.3 0.1 0.027 14.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|449068271|ref|YP_007435353.1| - 0.022 15.0 0.0 0.061 13.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|449068271|ref|YP_007435353.1| - 0.023 14.0 0.0 0.047 13.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|449068271|ref|YP_007435353.1| - 0.024 14.7 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|449068271|ref|YP_007435353.1| - 0.026 14.0 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|449068271|ref|YP_007435353.1| - 0.046 13.6 0.1 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 gi|449068271|ref|YP_007435353.1| - 0.061 12.9 0.1 0.098 12.2 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Septin PF00735.18 gi|449068271|ref|YP_007435353.1| - 0.074 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Septin SRP54 PF00448.22 gi|449068271|ref|YP_007435353.1| - 0.079 12.6 0.4 0.15 11.7 0.4 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF87 PF01935.17 gi|449068271|ref|YP_007435353.1| - 0.085 12.9 0.2 0.2 11.7 0.1 1.7 2 0 0 2 2 1 0 Helicase HerA, central domain Dynamin_N PF00350.23 gi|449068271|ref|YP_007435353.1| - 0.1 12.7 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 Dynamin family AAA_23 PF13476.6 gi|449068271|ref|YP_007435353.1| - 0.13 12.7 0.3 0.28 11.6 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|449068271|ref|YP_007435353.1| - 0.13 12.8 0.0 0.37 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|449068271|ref|YP_007435353.1| - 0.21 11.9 0.2 0.55 10.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|449068271|ref|YP_007435353.1| - 0.22 11.8 0.0 0.37 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|449068272|ref|YP_007435354.1| - 3.8e-14 52.7 4.2 1.1e-08 35.1 0.6 4.7 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F Anemone_cytotox PF06369.12 gi|449068272|ref|YP_007435354.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.5 2 0 0 2 2 2 0 Sea anemone cytotoxic protein DUF4407 PF14362.6 gi|449068272|ref|YP_007435354.1| - 4.8 6.4 8.3 0.14 11.5 1.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) DUF4448 PF14610.6 gi|449068272|ref|YP_007435354.1| - 5.7 6.7 4.4 1.8 8.3 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) Glu_synthase PF01645.17 gi|449068274|ref|YP_007435356.1| - 7.4e-96 321.5 2.8 4.3e-92 309.1 1.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|449068274|ref|YP_007435356.1| - 4e-16 59.3 0.1 1.5e-06 27.9 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|449068274|ref|YP_007435356.1| - 2.3e-07 30.2 11.2 1.4e-05 24.3 5.8 3.2 3 0 0 3 3 3 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|449068274|ref|YP_007435356.1| - 0.0011 18.4 3.6 0.0022 17.4 3.6 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|449068274|ref|YP_007435356.1| - 0.036 13.1 9.9 0.015 14.3 6.7 1.8 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|449068274|ref|YP_007435356.1| - 0.041 13.1 0.3 0.087 12.0 0.3 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|449068274|ref|YP_007435356.1| - 0.14 11.3 2.6 0.32 10.2 2.6 1.6 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase GXGXG PF01493.19 gi|449068275|ref|YP_007435357.1| - 8.4e-23 81.0 9.7 1.5e-22 80.1 9.7 1.4 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|449068275|ref|YP_007435357.1| - 2.3e-07 31.1 0.0 4.6e-06 26.9 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|449068275|ref|YP_007435357.1| - 3.5e-06 26.0 0.0 0.00051 18.9 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|449068275|ref|YP_007435357.1| - 0.013 15.4 0.0 0.13 12.2 0.0 2.2 1 1 0 1 1 1 0 Glutamine amidotransferase domain DUF3091 PF11291.8 gi|449068275|ref|YP_007435357.1| - 0.091 12.9 1.5 16 5.8 0.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3091) CbiG_N PF11760.8 gi|449068276|ref|YP_007435358.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal Peripla_BP_2 PF01497.18 gi|449068277|ref|YP_007435359.1| - 1.2e-13 51.2 0.0 1.7e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Haemagg_act PF05860.13 gi|449068278|ref|YP_007435360.1| - 0.013 15.4 2.3 0.023 14.6 2.3 1.4 1 0 0 1 1 1 0 haemagglutination activity domain PilS PF08805.11 gi|449068278|ref|YP_007435360.1| - 0.044 13.6 2.5 0.062 13.1 2.5 1.2 1 0 0 1 1 1 0 PilS N terminal HMGL-like PF00682.19 gi|449068279|ref|YP_007435361.1| - 1.3e-51 175.7 0.1 2.1e-51 175.0 0.1 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|449068279|ref|YP_007435361.1| - 1.9e-22 79.6 0.8 4e-21 75.3 0.1 2.6 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|449068279|ref|YP_007435361.1| - 0.046 13.2 0.0 0.59 9.5 0.0 2.3 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel UbiA PF01040.18 gi|449068280|ref|YP_007435362.1| - 1.8e-38 132.3 20.1 2.2e-38 132.0 20.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2752 PF10825.8 gi|449068280|ref|YP_007435362.1| - 0.23 11.5 0.0 0.23 11.5 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) GGACT PF06094.12 gi|449068281|ref|YP_007435363.1| - 5.6e-29 101.2 7.3 4.6e-22 78.9 1.9 2.1 2 0 0 2 2 2 2 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|449068281|ref|YP_007435363.1| - 1.5e-09 38.1 1.7 0.00014 22.1 0.0 2.2 2 0 0 2 2 2 2 AIG2-like family SF3b10 PF07189.11 gi|449068281|ref|YP_007435363.1| - 0.1 12.7 0.0 0.25 11.5 0.0 1.6 2 0 0 2 2 2 0 Splicing factor 3B subunit 10 (SF3b10) DUF2672 PF10878.8 gi|449068282|ref|YP_007435364.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2672) NfeD PF01957.18 gi|449068283|ref|YP_007435365.1| - 7.5e-16 58.3 3.5 2e-15 56.9 3.5 1.7 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding FUSC-like PF12805.7 gi|449068283|ref|YP_007435365.1| - 0.049 12.7 0.6 0.058 12.5 0.6 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Thermopsin PF05317.11 gi|449068284|ref|YP_007435366.1| - 6.1e-22 78.3 9.7 6.1e-22 78.3 9.7 1.8 2 1 1 3 3 3 1 Thermopsin Band_7 PF01145.25 gi|449068285|ref|YP_007435367.1| - 6.1e-35 120.8 5.3 8.1e-35 120.4 5.3 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|449068285|ref|YP_007435367.1| - 0.016 14.9 0.7 0.057 13.1 0.4 1.9 1 1 0 2 2 2 0 SPFH domain-Band 7 family SpoU_sub_bind PF08032.12 gi|449068285|ref|YP_007435367.1| - 0.095 13.0 0.2 0.69 10.2 0.1 2.2 1 1 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding LptE PF04390.12 gi|449068285|ref|YP_007435367.1| - 0.11 13.3 1.7 0.23 12.2 0.2 2.0 2 0 0 2 2 2 0 Lipopolysaccharide-assembly ATPase_2 PF01637.18 gi|449068286|ref|YP_007435368.1| - 2.4e-20 73.5 2.3 2.4e-20 73.5 2.3 3.1 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|449068286|ref|YP_007435368.1| - 9.7e-15 54.8 1.8 9e-14 51.7 2.3 2.4 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|449068286|ref|YP_007435368.1| - 3.2e-08 33.7 1.7 3.3e-08 33.6 0.2 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|449068286|ref|YP_007435368.1| - 8.3e-05 23.0 0.0 0.00014 22.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|449068286|ref|YP_007435368.1| - 0.006 16.3 0.0 0.039 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|449068286|ref|YP_007435368.1| - 0.025 14.8 0.1 1.2 9.5 0.1 2.7 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|449068286|ref|YP_007435368.1| - 0.12 11.8 0.1 1.2 8.5 0.0 2.2 1 1 1 2 2 2 0 Bacterial TniB protein DUF3474 PF11960.8 gi|449068286|ref|YP_007435368.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3474) ThiI PF02568.14 gi|449068287|ref|YP_007435369.1| - 5.4e-46 156.7 0.0 8.2e-46 156.1 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|449068287|ref|YP_007435369.1| - 1.8e-15 57.3 0.7 1.8e-15 57.3 0.7 1.8 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|449068287|ref|YP_007435369.1| - 2.9e-06 26.9 0.0 0.00093 18.8 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC Inos-1-P_synth PF01658.17 gi|449068288|ref|YP_007435370.1| - 1.3e-20 73.6 0.1 3.6e-20 72.2 0.0 1.8 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|449068288|ref|YP_007435370.1| - 0.00013 21.5 0.1 0.00036 20.0 0.0 1.7 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase GFO_IDH_MocA PF01408.22 gi|449068288|ref|YP_007435370.1| - 0.087 13.7 0.1 0.85 10.5 0.1 2.2 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Proton_antipo_M PF00361.20 gi|449068289|ref|YP_007435371.1| - 2e-42 145.4 32.4 2e-42 145.4 32.4 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|449068290|ref|YP_007435372.1| - 1.5e-74 250.9 84.9 9e-45 153.1 29.4 4.8 5 2 0 5 5 5 3 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|449068290|ref|YP_007435372.1| - 2.3e-08 34.0 19.4 8.7e-06 25.7 3.7 5.0 4 0 0 4 4 4 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|449068291|ref|YP_007435373.1| - 1.6e-10 40.5 8.8 1.9e-10 40.3 8.8 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TspO_MBR PF03073.15 gi|449068291|ref|YP_007435373.1| - 0.00094 19.2 5.1 0.0013 18.8 5.1 1.2 1 0 0 1 1 1 1 TspO/MBR family CoatB PF10389.9 gi|449068291|ref|YP_007435373.1| - 3 7.8 7.4 2 8.3 0.4 2.3 2 0 0 2 2 2 0 Bacteriophage coat protein B Oxidored_q3 PF00499.20 gi|449068292|ref|YP_007435374.1| - 1e-13 51.2 19.4 1e-13 51.2 19.4 1.4 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 7TMR-DISM_7TM PF07695.11 gi|449068292|ref|YP_007435374.1| - 7 6.5 30.0 51 3.7 30.0 2.2 1 1 0 1 1 1 0 7TM diverse intracellular signalling Fer4 PF00037.27 gi|449068293|ref|YP_007435375.1| - 8.7e-15 53.8 13.5 3.8e-09 36.0 3.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|449068293|ref|YP_007435375.1| - 3e-12 46.5 19.5 1.7e-08 34.5 10.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|449068293|ref|YP_007435375.1| - 9.4e-11 41.7 15.8 9.9e-08 32.0 9.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|449068293|ref|YP_007435375.1| - 3.8e-10 40.2 9.2 7e-10 39.3 9.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|449068293|ref|YP_007435375.1| - 1.7e-09 38.5 4.3 0.00039 21.3 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|449068293|ref|YP_007435375.1| - 1.2e-08 35.0 6.9 1.9e-08 34.3 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|449068293|ref|YP_007435375.1| - 2.2e-08 33.8 14.9 0.00034 20.6 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|449068293|ref|YP_007435375.1| - 8e-07 28.8 10.5 0.0041 17.1 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|449068293|ref|YP_007435375.1| - 3.1e-05 24.1 9.4 0.018 15.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|449068293|ref|YP_007435375.1| - 0.00022 22.0 16.5 0.031 15.2 4.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|449068293|ref|YP_007435375.1| - 0.00055 20.4 6.7 0.18 12.4 0.7 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|449068293|ref|YP_007435375.1| - 0.00058 20.3 8.3 0.027 14.9 0.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|449068293|ref|YP_007435375.1| - 0.0033 18.1 5.5 0.44 11.3 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|449068293|ref|YP_007435375.1| - 0.072 13.6 10.2 0.5 11.0 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|449068293|ref|YP_007435375.1| - 0.17 12.1 11.0 0.094 12.9 1.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|449068293|ref|YP_007435375.1| - 1.2 10.0 11.9 6.9 7.6 2.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|449068294|ref|YP_007435376.1| - 3.1e-77 259.8 29.1 3.8e-77 259.5 29.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|449068295|ref|YP_007435377.1| - 1.4e-94 316.2 0.0 2e-94 315.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|449068295|ref|YP_007435377.1| - 0.018 14.0 0.1 0.07 12.0 0.1 1.9 2 0 0 2 2 2 0 Nickel-dependent hydrogenase Complex1_30kDa PF00329.19 gi|449068296|ref|YP_007435378.1| - 5.9e-34 117.3 0.0 7.3e-34 117.0 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q4 PF00507.19 gi|449068297|ref|YP_007435379.1| - 3.1e-07 30.5 3.4 3.3e-07 30.4 2.7 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YqhR PF11085.8 gi|449068297|ref|YP_007435379.1| - 0.0026 17.7 4.5 0.0026 17.7 4.5 1.3 1 1 0 1 1 1 1 Conserved membrane protein YqhR Thy1 PF02511.15 gi|449068298|ref|YP_007435380.1| - 8e-64 214.9 0.2 9.5e-64 214.7 0.2 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DUF2175 PF09943.9 gi|449068299|ref|YP_007435381.1| - 1.4e-34 118.3 2.4 1.6e-34 118.1 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Ca_bind_SSO6904 PF18249.1 gi|449068299|ref|YP_007435381.1| - 2.9e-05 24.3 2.8 0.048 14.0 0.3 2.1 1 1 1 2 2 2 2 Calcium binding protein SSO6904 Vps39_2 PF10367.9 gi|449068299|ref|YP_007435381.1| - 0.0022 18.4 1.1 0.019 15.4 0.0 2.1 2 0 0 2 2 2 1 Vacuolar sorting protein 39 domain 2 DUF1825 PF08855.10 gi|449068299|ref|YP_007435381.1| - 0.0062 16.4 1.2 0.0099 15.8 1.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1825) DUF3231 PF11553.8 gi|449068299|ref|YP_007435381.1| - 0.044 13.4 0.4 0.059 13.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) FliG_N PF14842.6 gi|449068299|ref|YP_007435381.1| - 0.09 13.3 1.1 0.14 12.7 1.0 1.4 1 1 0 1 1 1 0 FliG N-terminal domain GFA PF04828.14 gi|449068299|ref|YP_007435381.1| - 0.11 12.9 0.2 0.19 12.1 0.1 1.5 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme C5-epim_C PF06662.13 gi|449068300|ref|YP_007435382.1| - 0.0013 18.3 0.8 0.095 12.2 0.1 2.6 1 1 0 2 2 2 2 D-glucuronyl C5-epimerase C-terminus Thioredoxin_2 PF13098.6 gi|449068300|ref|YP_007435382.1| - 0.016 15.6 0.7 0.24 11.8 0.1 2.6 2 1 0 2 2 2 0 Thioredoxin-like domain Glyco_hydro_76 PF03663.14 gi|449068300|ref|YP_007435382.1| - 0.14 11.7 0.9 2.1 7.8 0.1 2.1 1 1 0 1 1 1 0 Glycosyl hydrolase family 76 DUF364 PF04016.12 gi|449068301|ref|YP_007435383.1| - 1.3e-29 102.7 0.0 1.8e-29 102.2 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|449068301|ref|YP_007435383.1| - 4.9e-14 52.3 0.0 8.5e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation PadR PF03551.14 gi|449068302|ref|YP_007435384.1| - 4e-17 61.9 0.1 6.5e-17 61.3 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|449068302|ref|YP_007435384.1| - 0.00027 21.5 2.0 0.002 18.7 0.1 2.2 2 1 0 2 2 2 1 Replication terminator protein DUF1495 PF07381.11 gi|449068302|ref|YP_007435384.1| - 0.00073 19.3 0.6 0.0023 17.7 0.2 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain (DUF1495) DUF2207 PF09972.9 gi|449068302|ref|YP_007435384.1| - 0.0045 15.8 0.4 0.005 15.7 0.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) DUF4364 PF14277.6 gi|449068302|ref|YP_007435384.1| - 0.0048 16.7 0.1 0.012 15.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|449068302|ref|YP_007435384.1| - 0.0089 15.9 0.0 0.027 14.4 0.0 2.0 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|449068302|ref|YP_007435384.1| - 0.0096 16.1 0.1 0.024 14.8 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|449068302|ref|YP_007435384.1| - 0.13 12.1 1.3 0.47 10.4 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family ThiP_synth PF10120.9 gi|449068303|ref|YP_007435385.1| - 8.6e-52 175.1 0.0 9.7e-52 174.9 0.0 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase CarboxypepD_reg PF13620.6 gi|449068304|ref|YP_007435386.1| - 7.2e-09 35.8 10.0 7.2e-09 35.8 10.0 3.4 3 1 0 3 3 1 1 Carboxypeptidase regulatory-like domain Baculo_PEP_C PF04513.12 gi|449068304|ref|YP_007435386.1| - 1.3e-07 31.8 25.6 1.3e-07 31.8 25.6 2.0 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus XhlA PF10779.9 gi|449068304|ref|YP_007435386.1| - 1.3e-07 31.7 1.1 0.0056 16.9 0.7 2.5 1 1 1 2 2 2 2 Haemolysin XhlA Big_1 PF02369.16 gi|449068304|ref|YP_007435386.1| - 1.7e-07 31.2 8.6 1.7e-07 31.2 8.6 4.8 5 1 0 5 5 1 1 Bacterial Ig-like domain (group 1) ATG16 PF08614.11 gi|449068304|ref|YP_007435386.1| - 3.1e-06 27.5 4.1 4.9e-06 26.9 4.1 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF1664 PF07889.12 gi|449068304|ref|YP_007435386.1| - 3.4e-06 27.1 3.7 0.014 15.4 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF5082 PF16888.5 gi|449068304|ref|YP_007435386.1| - 8e-06 26.1 14.0 0.009 16.3 4.8 3.0 1 1 2 3 3 3 2 Domain of unknown function (DUF5082) MG2 PF01835.19 gi|449068304|ref|YP_007435386.1| - 8.5e-06 26.1 5.2 0.002 18.5 0.3 3.9 4 0 0 4 4 3 1 MG2 domain Spc7 PF08317.11 gi|449068304|ref|YP_007435386.1| - 8.9e-06 24.8 4.1 1.9e-05 23.7 4.0 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein SlyX PF04102.12 gi|449068304|ref|YP_007435386.1| - 1.2e-05 25.9 0.9 0.01 16.5 0.0 2.5 1 1 2 3 3 3 3 SlyX TMF_DNA_bd PF12329.8 gi|449068304|ref|YP_007435386.1| - 1.8e-05 24.6 10.0 0.015 15.3 3.0 2.3 1 1 1 2 2 2 2 TATA element modulatory factor 1 DNA binding bMG3 PF11974.8 gi|449068304|ref|YP_007435386.1| - 2.4e-05 24.3 1.0 0.00013 21.9 0.5 2.3 2 0 0 2 2 1 1 Bacterial alpha-2-macroglobulin MG3 domain Prefoldin_2 PF01920.20 gi|449068304|ref|YP_007435386.1| - 3.2e-05 23.8 0.8 0.052 13.5 0.5 2.4 1 1 1 2 2 2 1 Prefoldin subunit FlaC_arch PF05377.11 gi|449068304|ref|YP_007435386.1| - 3.3e-05 24.2 6.2 0.0045 17.3 1.2 3.1 1 1 1 2 2 2 1 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|449068304|ref|YP_007435386.1| - 4.4e-05 23.5 5.3 0.00016 21.7 5.5 1.7 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Invasin_D3 PF09134.10 gi|449068304|ref|YP_007435386.1| - 6.1e-05 23.2 11.4 6.1e-05 23.2 11.4 4.1 4 1 0 4 4 2 1 Invasin, domain 3 ADIP PF11559.8 gi|449068304|ref|YP_007435386.1| - 6.8e-05 23.0 10.1 0.00053 20.1 1.1 2.2 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding KASH_CCD PF14662.6 gi|449068304|ref|YP_007435386.1| - 7.1e-05 22.7 5.0 0.00014 21.7 5.0 1.4 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DUF812 PF05667.11 gi|449068304|ref|YP_007435386.1| - 7.4e-05 21.8 0.9 9.9e-05 21.4 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ZapB PF06005.12 gi|449068304|ref|YP_007435386.1| - 0.00011 22.6 5.4 0.13 12.7 3.3 2.3 2 0 0 2 2 2 1 Cell division protein ZapB BLOC1_2 PF10046.9 gi|449068304|ref|YP_007435386.1| - 0.00013 22.2 8.8 0.11 12.8 3.7 2.5 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Nup54 PF13874.6 gi|449068304|ref|YP_007435386.1| - 0.00014 21.9 4.8 0.00024 21.2 4.8 1.3 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 DUF4988 PF16378.5 gi|449068304|ref|YP_007435386.1| - 0.00018 21.3 6.2 0.42 10.3 0.1 3.6 1 1 2 3 3 3 1 Domain of unknown function EzrA PF06160.12 gi|449068304|ref|YP_007435386.1| - 0.00019 19.8 2.5 0.00019 19.8 2.5 1.4 2 0 0 2 2 1 1 Septation ring formation regulator, EzrA EMP24_GP25L PF01105.24 gi|449068304|ref|YP_007435386.1| - 0.00019 21.4 9.1 0.043 13.7 3.0 3.9 1 1 2 3 3 3 1 emp24/gp25L/p24 family/GOLD HOOK PF05622.12 gi|449068304|ref|YP_007435386.1| - 0.00021 19.6 3.6 0.00028 19.2 3.6 1.1 1 0 0 1 1 1 1 HOOK protein NPV_P10 PF05531.12 gi|449068304|ref|YP_007435386.1| - 0.00026 21.4 13.0 0.025 15.1 1.0 2.5 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein Lzipper-MIP1 PF14389.6 gi|449068304|ref|YP_007435386.1| - 0.0003 21.0 3.1 0.068 13.5 0.6 2.5 1 1 1 2 2 2 1 Leucine-zipper of ternary complex factor MIP1 FapA PF03961.13 gi|449068304|ref|YP_007435386.1| - 0.0003 19.5 1.2 0.00047 18.9 1.2 1.2 1 0 0 1 1 1 1 Flagellar Assembly Protein A APG6_N PF17675.1 gi|449068304|ref|YP_007435386.1| - 0.00034 21.1 0.5 0.00099 19.6 0.5 1.7 1 1 0 1 1 1 1 Apg6 coiled-coil region FAM76 PF16046.5 gi|449068304|ref|YP_007435386.1| - 0.00035 20.0 2.6 0.0005 19.5 2.6 1.1 1 0 0 1 1 1 1 FAM76 protein CLZ PF16526.5 gi|449068304|ref|YP_007435386.1| - 0.00035 20.8 2.6 0.12 12.8 0.7 2.6 1 1 1 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels AAA_13 PF13166.6 gi|449068304|ref|YP_007435386.1| - 0.00036 19.3 2.7 0.00051 18.8 2.7 1.1 1 0 0 1 1 1 1 AAA domain Prefoldin PF02996.17 gi|449068304|ref|YP_007435386.1| - 0.00041 20.3 4.9 0.1 12.5 0.8 3.2 1 1 2 3 3 3 2 Prefoldin subunit Snapin_Pallidin PF14712.6 gi|449068304|ref|YP_007435386.1| - 0.00044 20.6 2.4 0.00044 20.6 2.4 2.2 1 1 1 2 2 2 1 Snapin/Pallidin IFT57 PF10498.9 gi|449068304|ref|YP_007435386.1| - 0.00048 19.2 6.1 0.00071 18.7 6.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 CarbopepD_reg_2 PF13715.6 gi|449068304|ref|YP_007435386.1| - 0.00051 20.0 5.1 0.00051 20.0 5.1 3.3 2 1 1 3 3 2 1 CarboxypepD_reg-like domain Golgin_A5 PF09787.9 gi|449068304|ref|YP_007435386.1| - 0.00057 19.4 7.1 0.00084 18.9 7.1 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 Atg14 PF10186.9 gi|449068304|ref|YP_007435386.1| - 0.00058 19.0 6.0 0.0013 17.9 6.0 1.5 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 HAUS-augmin3 PF14932.6 gi|449068304|ref|YP_007435386.1| - 0.0006 19.5 6.8 0.00089 18.9 6.8 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 HMMR_N PF15905.5 gi|449068304|ref|YP_007435386.1| - 0.00067 19.2 4.1 0.0016 18.0 4.1 1.5 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF3450 PF11932.8 gi|449068304|ref|YP_007435386.1| - 0.00077 18.8 8.7 0.0044 16.4 6.6 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) Filament PF00038.21 gi|449068304|ref|YP_007435386.1| - 0.00096 18.8 2.4 0.0016 18.1 2.4 1.3 1 0 0 1 1 1 1 Intermediate filament protein GAS PF13851.6 gi|449068304|ref|YP_007435386.1| - 0.00098 18.5 1.8 0.0017 17.7 1.8 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding UPF0242 PF06785.11 gi|449068304|ref|YP_007435386.1| - 0.0012 19.0 0.7 0.0021 18.2 0.7 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus TolA_bind_tri PF16331.5 gi|449068304|ref|YP_007435386.1| - 0.0012 18.9 6.3 0.031 14.4 1.3 2.7 1 1 1 2 2 2 2 TolA binding protein trimerisation Cast PF10174.9 gi|449068304|ref|YP_007435386.1| - 0.0012 17.2 2.0 0.0016 16.8 2.0 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Gp58 PF07902.11 gi|449068304|ref|YP_007435386.1| - 0.0012 17.2 9.4 0.0025 16.2 9.4 1.5 1 0 0 1 1 1 1 gp58-like protein SpaA PF17802.1 gi|449068304|ref|YP_007435386.1| - 0.0014 18.9 0.5 0.0014 18.9 0.5 2.5 3 1 0 3 3 1 1 Prealbumin-like fold domain Seryl_tRNA_N PF02403.22 gi|449068304|ref|YP_007435386.1| - 0.0016 18.6 2.7 0.0029 17.8 2.7 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.10 gi|449068304|ref|YP_007435386.1| - 0.0017 18.5 11.7 0.032 14.4 7.6 2.3 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family FPP PF05911.11 gi|449068304|ref|YP_007435386.1| - 0.002 16.4 7.8 0.0028 16.0 7.8 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil BRE1 PF08647.11 gi|449068304|ref|YP_007435386.1| - 0.0021 18.1 6.9 0.011 15.7 3.6 2.0 1 1 1 2 2 2 1 BRE1 E3 ubiquitin ligase ABC_tran_CTD PF16326.5 gi|449068304|ref|YP_007435386.1| - 0.0021 18.3 0.0 0.1 12.9 0.0 2.3 1 1 2 3 3 3 1 ABC transporter C-terminal domain TMPIT PF07851.13 gi|449068304|ref|YP_007435386.1| - 0.0023 17.3 1.2 0.0049 16.2 1.2 1.6 1 0 0 1 1 1 1 TMPIT-like protein DUF4795 PF16043.5 gi|449068304|ref|YP_007435386.1| - 0.0026 17.4 6.4 0.15 11.7 2.8 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) DHR10 PF18595.1 gi|449068304|ref|YP_007435386.1| - 0.0027 17.7 1.6 0.0057 16.7 0.8 1.7 1 1 1 2 2 2 2 Designed helical repeat protein 10 domain FliD_C PF07195.12 gi|449068304|ref|YP_007435386.1| - 0.0034 16.8 11.1 0.012 15.1 3.8 2.6 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus TMF_TATA_bd PF12325.8 gi|449068304|ref|YP_007435386.1| - 0.0034 17.6 4.4 0.03 14.5 4.6 2.2 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding Rab5-bind PF09311.11 gi|449068304|ref|YP_007435386.1| - 0.0041 16.5 1.7 0.0063 15.9 1.7 1.2 1 0 0 1 1 1 1 Rabaptin-like protein DUF2730 PF10805.8 gi|449068304|ref|YP_007435386.1| - 0.0044 17.1 5.0 0.058 13.5 0.6 2.9 1 1 2 3 3 2 2 Protein of unknown function (DUF2730) DUF16 PF01519.16 gi|449068304|ref|YP_007435386.1| - 0.0045 17.5 4.6 0.063 13.8 2.8 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF16 DivIC PF04977.15 gi|449068304|ref|YP_007435386.1| - 0.0046 16.7 6.0 1.5 8.6 0.1 3.4 1 1 2 3 3 3 0 Septum formation initiator Spc24 PF08286.11 gi|449068304|ref|YP_007435386.1| - 0.0047 17.2 9.4 2.1 8.6 0.4 3.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Lebercilin PF15619.6 gi|449068304|ref|YP_007435386.1| - 0.0049 16.5 1.7 0.0093 15.7 1.7 1.4 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Uso1_p115_C PF04871.13 gi|449068304|ref|YP_007435386.1| - 0.005 17.2 2.6 0.013 15.9 2.6 1.7 1 1 0 1 1 1 1 Uso1 / p115 like vesicle tethering protein, C terminal region Laminin_II PF06009.12 gi|449068304|ref|YP_007435386.1| - 0.0051 16.8 9.5 0.012 15.6 9.5 1.7 1 1 0 1 1 1 1 Laminin Domain II Exonuc_VII_L PF02601.15 gi|449068304|ref|YP_007435386.1| - 0.0054 16.3 3.6 0.0087 15.7 3.6 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit WEMBL PF05701.11 gi|449068304|ref|YP_007435386.1| - 0.0059 15.4 2.3 0.0081 14.9 2.3 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF724 PF05266.14 gi|449068304|ref|YP_007435386.1| - 0.0061 16.4 2.0 0.009 15.9 2.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF724) Bacillus_HBL PF05791.11 gi|449068304|ref|YP_007435386.1| - 0.0062 16.4 14.0 0.022 14.6 7.9 2.3 1 1 1 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) TRAF_BIRC3_bd PF16673.5 gi|449068304|ref|YP_007435386.1| - 0.0064 16.3 0.2 0.27 11.1 0.0 2.5 1 1 1 2 2 2 1 TNF receptor-associated factor BIRC3 binding domain FliJ PF02050.16 gi|449068304|ref|YP_007435386.1| - 0.0065 16.7 3.5 0.13 12.5 0.1 2.2 1 1 2 3 3 3 2 Flagellar FliJ protein Myosin_tail_1 PF01576.19 gi|449068304|ref|YP_007435386.1| - 0.0067 14.3 1.6 0.0091 13.9 1.6 1.0 1 0 0 1 1 1 1 Myosin tail Tropomyosin_1 PF12718.7 gi|449068304|ref|YP_007435386.1| - 0.0079 16.3 2.5 0.65 10.1 1.6 2.2 1 1 1 2 2 2 1 Tropomyosin like HlyD_2 PF12700.7 gi|449068304|ref|YP_007435386.1| - 0.008 15.0 3.0 0.013 14.3 3.0 1.2 1 0 0 1 1 1 1 HlyD family secretion protein TPR_MLP1_2 PF07926.12 gi|449068304|ref|YP_007435386.1| - 0.0087 16.1 6.7 0.011 15.8 1.2 2.0 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein PspA_IM30 PF04012.12 gi|449068304|ref|YP_007435386.1| - 0.0089 15.6 1.5 0.35 10.4 0.9 2.0 1 1 1 2 2 2 1 PspA/IM30 family DUF4164 PF13747.6 gi|449068304|ref|YP_007435386.1| - 0.013 15.7 0.2 0.023 15.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) V-SNARE PF05008.15 gi|449068304|ref|YP_007435386.1| - 0.014 15.8 0.8 0.029 14.7 0.8 1.6 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus DUF2205 PF10224.9 gi|449068304|ref|YP_007435386.1| - 0.015 15.3 4.1 0.059 13.4 1.0 2.6 1 1 1 2 2 2 0 Short coiled-coil protein DegS PF05384.11 gi|449068304|ref|YP_007435386.1| - 0.015 14.8 0.5 0.026 14.0 0.5 1.4 1 0 0 1 1 1 0 Sensor protein DegS DUF4618 PF15397.6 gi|449068304|ref|YP_007435386.1| - 0.015 14.7 5.1 1.8 7.9 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Tektin PF03148.14 gi|449068304|ref|YP_007435386.1| - 0.017 13.9 4.2 0.17 10.6 2.0 1.9 1 1 0 1 1 1 0 Tektin family Phage_GP20 PF06810.11 gi|449068304|ref|YP_007435386.1| - 0.017 14.9 1.6 0.17 11.7 0.8 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF3584 PF12128.8 gi|449068304|ref|YP_007435386.1| - 0.017 12.6 3.1 0.023 12.2 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HAP1_N PF04849.13 gi|449068304|ref|YP_007435386.1| - 0.019 14.2 2.7 0.031 13.5 2.7 1.3 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Filo_VP35 PF02097.15 gi|449068304|ref|YP_007435386.1| - 0.02 13.9 2.0 0.043 12.9 1.6 1.6 1 1 1 2 2 2 0 Filoviridae VP35 HemX PF04375.14 gi|449068304|ref|YP_007435386.1| - 0.022 14.1 11.5 1.1 8.5 11.5 2.2 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase MscS_porin PF12795.7 gi|449068304|ref|YP_007435386.1| - 0.023 14.3 22.8 0.18 11.3 9.8 2.2 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain RasGAP_C PF03836.15 gi|449068304|ref|YP_007435386.1| - 0.024 14.8 7.0 1 9.5 7.0 2.3 1 1 0 1 1 1 0 RasGAP C-terminus GIT_CC PF16559.5 gi|449068304|ref|YP_007435386.1| - 0.025 14.5 18.1 0.17 11.7 1.4 3.7 1 1 3 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor Dynamitin PF04912.14 gi|449068304|ref|YP_007435386.1| - 0.026 13.9 6.0 0.059 12.7 6.0 1.5 1 0 0 1 1 1 0 Dynamitin DivIVA PF05103.13 gi|449068304|ref|YP_007435386.1| - 0.029 14.5 2.1 0.077 13.1 0.8 2.0 1 1 1 2 2 2 0 DivIVA protein Vps51 PF08700.11 gi|449068304|ref|YP_007435386.1| - 0.031 14.4 9.8 4.1 7.5 3.3 3.5 1 1 2 3 3 3 0 Vps51/Vps67 MG4 PF17789.1 gi|449068304|ref|YP_007435386.1| - 0.032 14.4 1.1 0.032 14.4 1.1 3.6 2 2 2 4 4 2 0 Macroglobulin domain MG4 Helo_like_N PF17111.5 gi|449068304|ref|YP_007435386.1| - 0.033 13.6 6.7 0.17 11.3 2.8 2.2 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins Csm1_N PF18504.1 gi|449068304|ref|YP_007435386.1| - 0.033 14.5 6.1 2.4 8.5 0.2 3.2 1 1 2 3 3 3 0 Csm1 N-terminal domain DUF4472 PF14739.6 gi|449068304|ref|YP_007435386.1| - 0.033 14.9 1.0 0.072 13.8 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4472) GCP_N_terminal PF17681.1 gi|449068304|ref|YP_007435386.1| - 0.033 13.8 3.2 0.051 13.2 3.2 1.3 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal DUF4201 PF13870.6 gi|449068304|ref|YP_007435386.1| - 0.036 13.8 1.1 0.13 12.0 0.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) COG5 PF10392.9 gi|449068304|ref|YP_007435386.1| - 0.037 14.2 13.5 0.15 12.2 13.5 1.9 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Jnk-SapK_ap_N PF09744.9 gi|449068304|ref|YP_007435386.1| - 0.04 14.1 3.7 0.87 9.8 3.7 2.1 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF713 PF05218.14 gi|449068304|ref|YP_007435386.1| - 0.041 13.6 0.6 0.13 12.0 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF713) Med9 PF07544.13 gi|449068304|ref|YP_007435386.1| - 0.041 14.0 2.4 1.2 9.2 0.6 2.2 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 CALCOCO1 PF07888.11 gi|449068304|ref|YP_007435386.1| - 0.045 12.6 1.2 0.063 12.1 1.2 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Glyco_hydro2_C5 PF18565.1 gi|449068304|ref|YP_007435386.1| - 0.05 13.4 0.6 2.2 8.2 0.2 3.1 3 0 0 3 3 2 0 Glycoside hydrolase family 2 C-terminal domain 5 Laminin_I PF06008.14 gi|449068304|ref|YP_007435386.1| - 0.052 13.3 10.4 0.14 11.8 10.4 1.6 1 1 0 1 1 1 0 Laminin Domain I Fmp27_WPPW PF10359.9 gi|449068304|ref|YP_007435386.1| - 0.056 12.3 4.3 0.16 10.8 3.4 1.9 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF4686 PF15742.5 gi|449068304|ref|YP_007435386.1| - 0.056 12.6 6.1 0.081 12.0 6.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) DUF4763 PF15960.5 gi|449068304|ref|YP_007435386.1| - 0.057 12.7 7.3 0.18 11.1 2.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) DUF4200 PF13863.6 gi|449068304|ref|YP_007435386.1| - 0.059 13.8 0.2 1.8 9.0 0.2 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) Ax_dynein_light PF10211.9 gi|449068304|ref|YP_007435386.1| - 0.06 13.3 1.8 0.24 11.3 1.1 1.9 1 1 1 2 2 2 0 Axonemal dynein light chain DUF2968 PF11180.8 gi|449068304|ref|YP_007435386.1| - 0.062 12.9 3.1 0.49 10.0 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) DUF4198 PF10670.9 gi|449068304|ref|YP_007435386.1| - 0.065 13.6 0.2 0.2 12.0 0.1 1.8 1 1 1 2 2 1 0 Domain of unknown function (DUF4198) PI3K_P85_iSH2 PF16454.5 gi|449068304|ref|YP_007435386.1| - 0.066 12.8 3.5 0.27 10.8 1.3 2.0 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Macoilin PF09726.9 gi|449068304|ref|YP_007435386.1| - 0.067 11.7 2.9 0.11 11.1 2.9 1.2 1 0 0 1 1 1 0 Macoilin family KxDL PF10241.9 gi|449068304|ref|YP_007435386.1| - 0.071 13.4 5.2 0.066 13.5 2.7 2.2 1 1 2 3 3 3 0 Uncharacterized conserved protein Fez1 PF06818.15 gi|449068304|ref|YP_007435386.1| - 0.074 13.5 1.0 0.12 12.8 1.0 1.3 1 0 0 1 1 1 0 Fez1 WXG100 PF06013.12 gi|449068304|ref|YP_007435386.1| - 0.078 13.2 5.9 2.1 8.6 0.3 3.3 1 1 3 4 4 4 0 Proteins of 100 residues with WXG Taxilin PF09728.9 gi|449068304|ref|YP_007435386.1| - 0.096 11.9 2.3 0.19 10.9 1.5 1.6 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Herpes_UL6 PF01763.16 gi|449068304|ref|YP_007435386.1| - 0.098 11.2 8.1 0.15 10.5 8.1 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like SF-assemblin PF06705.11 gi|449068304|ref|YP_007435386.1| - 0.1 12.0 5.7 0.21 10.9 5.7 1.4 1 1 0 1 1 1 0 SF-assemblin/beta giardin LPP PF04728.13 gi|449068304|ref|YP_007435386.1| - 0.1 13.0 18.7 5.4 7.5 1.0 4.1 1 1 3 4 4 4 0 Lipoprotein leucine-zipper YabA PF06156.13 gi|449068304|ref|YP_007435386.1| - 0.11 13.1 2.8 1.7 9.4 1.1 2.4 1 1 1 2 2 2 0 Initiation control protein YabA DUF4407 PF14362.6 gi|449068304|ref|YP_007435386.1| - 0.12 11.7 6.4 0.05 12.9 1.4 2.4 1 1 1 2 2 1 0 Domain of unknown function (DUF4407) SOGA PF11365.8 gi|449068304|ref|YP_007435386.1| - 0.12 13.5 1.4 0.25 12.5 1.4 1.5 1 0 0 1 1 1 0 Protein SOGA FmiP_Thoc5 PF09766.9 gi|449068304|ref|YP_007435386.1| - 0.12 11.6 12.6 0.058 12.7 3.7 2.6 2 1 1 3 3 3 0 Fms-interacting protein/Thoc5 Uds1 PF15456.6 gi|449068304|ref|YP_007435386.1| - 0.13 12.5 3.0 0.25 11.5 3.0 1.4 1 0 0 1 1 1 0 Up-regulated During Septation Mod_r PF07200.13 gi|449068304|ref|YP_007435386.1| - 0.13 12.4 8.6 0.22 11.6 8.6 1.4 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein LXG PF04740.12 gi|449068304|ref|YP_007435386.1| - 0.13 11.9 8.6 0.48 10.1 4.1 2.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily MbeD_MobD PF04899.12 gi|449068304|ref|YP_007435386.1| - 0.13 12.4 12.1 1.8 8.7 0.6 3.4 1 1 2 3 3 3 0 MbeD/MobD like SesA PF17107.5 gi|449068304|ref|YP_007435386.1| - 0.13 12.4 1.9 0.26 11.5 1.9 1.4 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases CENP-Q PF13094.6 gi|449068304|ref|YP_007435386.1| - 0.14 12.4 2.5 0.8 9.9 2.5 2.0 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit TACC_C PF05010.14 gi|449068304|ref|YP_007435386.1| - 0.14 12.0 0.6 0.24 11.1 0.6 1.4 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TSC22 PF01166.18 gi|449068304|ref|YP_007435386.1| - 0.16 12.3 3.1 1.3 9.4 1.3 2.7 1 1 2 3 3 3 0 TSC-22/dip/bun family RmuC PF02646.16 gi|449068304|ref|YP_007435386.1| - 0.16 11.1 4.4 1.5 7.9 2.0 2.1 1 1 1 2 2 2 0 RmuC family Cluap1 PF10234.9 gi|449068304|ref|YP_007435386.1| - 0.18 11.2 5.3 1 8.7 2.5 1.9 1 1 1 2 2 2 0 Clusterin-associated protein-1 Apolipoprotein PF01442.18 gi|449068304|ref|YP_007435386.1| - 0.19 11.6 1.3 0.73 9.7 1.3 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain bZIP_1 PF00170.21 gi|449068304|ref|YP_007435386.1| - 0.2 11.8 5.0 3.8 7.7 0.9 2.7 1 1 2 3 3 3 0 bZIP transcription factor DUF4140 PF13600.6 gi|449068304|ref|YP_007435386.1| - 0.21 12.1 5.4 3.1 8.3 0.5 3.8 3 1 1 4 4 2 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.11 gi|449068304|ref|YP_007435386.1| - 0.21 12.1 6.0 1.4 9.5 6.0 2.1 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF948 PF06103.11 gi|449068304|ref|YP_007435386.1| - 0.23 11.7 0.1 0.23 11.7 0.1 3.8 3 1 1 4 4 2 0 Bacterial protein of unknown function (DUF948) MtrB PF05440.12 gi|449068304|ref|YP_007435386.1| - 0.24 11.9 4.4 1.9 8.9 0.2 2.8 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B MAD PF05557.13 gi|449068304|ref|YP_007435386.1| - 0.24 9.7 5.7 0.49 8.7 0.4 1.7 1 1 1 2 2 2 0 Mitotic checkpoint protein Swi5 PF07061.11 gi|449068304|ref|YP_007435386.1| - 0.24 11.5 3.2 13 6.0 1.6 2.9 1 1 1 2 2 2 0 Swi5 Nsp1_C PF05064.13 gi|449068304|ref|YP_007435386.1| - 0.25 11.1 4.1 0.64 9.8 3.2 1.9 1 1 1 2 2 2 0 Nsp1-like C-terminal region JIP_LZII PF16471.5 gi|449068304|ref|YP_007435386.1| - 0.28 11.4 3.1 5.5 7.2 1.5 2.3 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II CENP-H PF05837.12 gi|449068304|ref|YP_007435386.1| - 0.28 11.6 7.3 1.5 9.2 7.2 2.1 1 1 0 1 1 1 0 Centromere protein H (CENP-H) DUF641 PF04859.12 gi|449068304|ref|YP_007435386.1| - 0.3 11.4 2.7 2.7 8.3 1.3 2.1 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) APG17 PF04108.12 gi|449068304|ref|YP_007435386.1| - 0.31 10.1 6.3 0.52 9.4 6.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg17 Fzo_mitofusin PF04799.13 gi|449068304|ref|YP_007435386.1| - 0.31 10.6 7.8 1.5 8.4 7.5 2.3 1 1 0 1 1 1 0 fzo-like conserved region COG2 PF06148.11 gi|449068304|ref|YP_007435386.1| - 0.32 11.1 6.9 5.8 7.0 3.5 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 GCN5L1 PF06320.13 gi|449068304|ref|YP_007435386.1| - 0.32 11.2 3.5 1 9.5 2.4 2.0 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) BST2 PF16716.5 gi|449068304|ref|YP_007435386.1| - 0.32 11.6 7.2 0.52 10.9 3.2 2.3 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Leu_zip PF15294.6 gi|449068304|ref|YP_007435386.1| - 0.35 10.4 4.8 0.5 9.8 4.8 1.1 1 0 0 1 1 1 0 Leucine zipper DASH_Dam1 PF08653.10 gi|449068304|ref|YP_007435386.1| - 0.37 10.6 10.4 2.6 7.9 2.9 3.3 1 1 2 3 3 3 0 DASH complex subunit Dam1 Not3 PF04065.15 gi|449068304|ref|YP_007435386.1| - 0.4 10.1 2.5 0.67 9.3 2.1 1.4 1 1 1 2 2 1 0 Not1 N-terminal domain, CCR4-Not complex component Cnn_1N PF07989.11 gi|449068304|ref|YP_007435386.1| - 0.4 10.9 2.0 1.6 8.9 1.0 1.9 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 CdvA PF18822.1 gi|449068304|ref|YP_007435386.1| - 0.46 10.3 4.1 15 5.4 4.1 2.7 1 1 0 1 1 1 0 CdvA-like coiled-coil domain SKA1 PF07160.12 gi|449068304|ref|YP_007435386.1| - 0.49 10.2 6.6 3.9 7.2 6.6 2.0 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 1 STAT_alpha PF01017.20 gi|449068304|ref|YP_007435386.1| - 0.54 10.1 5.8 1.5 8.7 5.5 1.7 1 1 0 1 1 1 0 STAT protein, all-alpha domain CREPT PF16566.5 gi|449068304|ref|YP_007435386.1| - 0.56 10.4 4.9 1.1 9.5 3.1 1.7 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour BAR_3 PF16746.5 gi|449068304|ref|YP_007435386.1| - 0.6 9.8 4.5 0.99 9.1 4.5 1.3 1 0 0 1 1 1 0 BAR domain of APPL family THOC7 PF05615.13 gi|449068304|ref|YP_007435386.1| - 0.64 10.3 2.8 2.3 8.5 0.9 2.0 1 1 1 2 2 2 0 Tho complex subunit 7 Sec34 PF04136.15 gi|449068304|ref|YP_007435386.1| - 0.65 9.9 11.3 2.1 8.2 7.0 2.2 1 1 1 2 2 2 0 Sec34-like family AIP3 PF03915.13 gi|449068304|ref|YP_007435386.1| - 0.66 9.0 4.5 1 8.4 4.5 1.2 1 0 0 1 1 1 0 Actin interacting protein 3 Sec2p PF06428.11 gi|449068304|ref|YP_007435386.1| - 0.77 9.8 6.0 4.8 7.2 2.3 2.3 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p CorA PF01544.18 gi|449068304|ref|YP_007435386.1| - 0.77 9.0 8.3 0.093 12.0 3.6 1.9 1 1 1 2 2 1 0 CorA-like Mg2+ transporter protein CK2S PF15011.6 gi|449068304|ref|YP_007435386.1| - 0.93 9.4 6.4 20 5.1 2.7 2.4 1 1 2 3 3 3 0 Casein Kinase 2 substrate Prominin PF05478.11 gi|449068304|ref|YP_007435386.1| - 1.2 7.0 11.5 3 5.7 11.4 1.4 1 1 0 1 1 1 0 Prominin H-kinase_dim PF02895.14 gi|449068304|ref|YP_007435386.1| - 1.2 9.5 7.9 3.4 8.1 1.7 2.5 1 1 1 2 2 2 0 Signal transducing histidine kinase, homodimeric domain Wtap PF17098.5 gi|449068304|ref|YP_007435386.1| - 1.3 9.0 6.9 4.7 7.1 4.8 2.0 1 1 1 2 2 2 0 WTAP/Mum2p family MIP-T3_C PF17749.1 gi|449068304|ref|YP_007435386.1| - 1.6 8.6 5.8 8.9 6.3 5.8 1.9 1 1 0 1 1 1 0 Microtubule-binding protein MIP-T3 C-terminal region HIP1_clath_bdg PF16515.5 gi|449068304|ref|YP_007435386.1| - 1.7 9.3 9.2 1.2 9.8 6.6 2.0 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TRPM_tetra PF16519.5 gi|449068304|ref|YP_007435386.1| - 1.9 8.6 4.6 5.4 7.2 1.1 2.4 2 0 0 2 2 2 0 Tetramerisation domain of TRPM Vps52 PF04129.12 gi|449068304|ref|YP_007435386.1| - 2.1 7.0 9.7 1.8 7.2 4.3 1.6 1 1 1 2 2 2 0 Vps52 / Sac2 family TBK1_CCD1 PF18394.1 gi|449068304|ref|YP_007435386.1| - 2.3 7.7 7.7 10 5.6 7.7 1.8 1 1 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 Syntaxin_2 PF14523.6 gi|449068304|ref|YP_007435386.1| - 2.3 8.6 17.0 16 5.9 15.2 2.3 1 1 1 2 2 2 0 Syntaxin-like protein DUF4349 PF14257.6 gi|449068304|ref|YP_007435386.1| - 2.6 7.5 14.7 0.13 11.7 3.8 3.4 2 2 0 2 2 2 0 Domain of unknown function (DUF4349) Cortex-I_coil PF09304.10 gi|449068304|ref|YP_007435386.1| - 2.8 8.2 5.6 2.7 8.2 3.7 1.8 1 1 0 1 1 1 0 Cortexillin I, coiled coil CCDC144C PF14915.6 gi|449068304|ref|YP_007435386.1| - 2.8 7.0 11.5 35 3.4 11.5 2.0 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region DUF4094 PF13334.6 gi|449068304|ref|YP_007435386.1| - 3.2 8.2 9.9 1.1e+02 3.4 7.5 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Vps5 PF09325.10 gi|449068304|ref|YP_007435386.1| - 3.9 7.0 7.5 8.4 5.9 7.1 1.6 1 1 0 1 1 1 0 Vps5 C terminal like Nop14 PF04147.12 gi|449068304|ref|YP_007435386.1| - 4 5.5 6.0 5.1 5.2 6.0 1.1 1 0 0 1 1 1 0 Nop14-like family Cep57_CLD_2 PF14197.6 gi|449068304|ref|YP_007435386.1| - 4.1 7.6 6.9 15 5.8 4.7 2.6 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DASH_Dad2 PF08654.10 gi|449068304|ref|YP_007435386.1| - 4.3 7.8 7.4 39 4.8 3.7 2.8 1 1 1 2 2 2 0 DASH complex subunit Dad2 AATF-Che1 PF13339.6 gi|449068304|ref|YP_007435386.1| - 4.7 7.9 8.2 20 5.9 8.2 1.9 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor End3 PF12761.7 gi|449068304|ref|YP_007435386.1| - 7.4 6.7 7.8 3.6 7.7 3.1 2.1 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 GP41 PF00517.17 gi|449068304|ref|YP_007435386.1| - 9.8 6.0 15.9 58 3.5 10.3 2.8 2 1 0 2 2 1 0 Retroviral envelope protein PaREP1 PF05942.11 gi|449068307|ref|YP_007435389.1| - 4.1e-31 107.3 2.2 4.7e-31 107.1 2.2 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family GT-D PF08759.11 gi|449068307|ref|YP_007435389.1| - 0.036 13.7 0.1 0.048 13.3 0.1 1.5 1 1 0 1 1 1 0 Glycosyltransferase GT-D fold HTH_3 PF01381.22 gi|449068308|ref|YP_007435390.1| - 6e-09 35.8 0.0 1.4e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|449068308|ref|YP_007435390.1| - 8.7e-06 25.7 0.0 1.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|449068308|ref|YP_007435390.1| - 8.1e-05 22.9 0.0 0.00013 22.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GP3_package PF16677.5 gi|449068308|ref|YP_007435390.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 DNA-packaging protein gp3 NAC PF01849.18 gi|449068309|ref|YP_007435391.1| - 2.4e-09 37.0 0.6 2.4e-09 37.0 0.6 2.2 3 0 0 3 3 3 1 NAC domain HOIP-UBA PF16678.5 gi|449068309|ref|YP_007435391.1| - 0.0079 16.2 0.6 0.012 15.6 0.6 1.3 1 0 0 1 1 1 1 HOIP UBA domain pair UBA_4 PF14555.6 gi|449068309|ref|YP_007435391.1| - 0.04 13.8 0.0 0.066 13.0 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Pannexin_like PF12534.8 gi|449068309|ref|YP_007435391.1| - 0.061 12.4 0.6 0.064 12.3 0.6 1.1 1 0 0 1 1 1 0 Pannexin-like TM region of LRRC8 CUE PF02845.16 gi|449068309|ref|YP_007435391.1| - 0.062 13.0 0.0 0.17 11.7 0.0 1.8 1 1 1 2 2 2 0 CUE domain PvlArgDC PF01862.16 gi|449068309|ref|YP_007435391.1| - 0.12 12.1 1.4 0.19 11.5 1.4 1.4 1 1 0 1 1 1 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Beta-Casp PF10996.8 gi|449068310|ref|YP_007435392.1| - 3.9e-16 59.3 0.0 1.3e-15 57.6 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|449068310|ref|YP_007435392.1| - 1.1e-14 54.1 0.1 2e-14 53.2 0.1 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|449068310|ref|YP_007435392.1| - 2.1e-10 40.3 0.0 3e-09 36.6 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|449068310|ref|YP_007435392.1| - 7.6e-09 35.4 0.0 1.6e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|449068310|ref|YP_007435392.1| - 7.6e-06 26.1 0.1 0.00027 21.0 0.1 2.6 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.15 gi|449068310|ref|YP_007435392.1| - 0.0002 20.6 0.0 0.00039 19.6 0.0 1.4 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II Lactamase_B_3 PF13483.6 gi|449068310|ref|YP_007435392.1| - 0.0017 18.3 0.0 0.0032 17.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Beta_lactamase3 PF17030.5 gi|449068310|ref|YP_007435392.1| - 0.035 13.3 0.1 0.081 12.1 0.0 1.6 2 0 0 2 2 2 0 Putative beta-lactamase-like family DUF223 PF02721.14 gi|449068310|ref|YP_007435392.1| - 0.13 12.6 0.1 0.25 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF223 tRNA-Thr_ED PF08915.11 gi|449068311|ref|YP_007435393.1| - 3.4e-49 166.4 0.1 5.5e-49 165.7 0.1 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|449068311|ref|YP_007435393.1| - 1.3e-15 57.3 0.3 3.8e-15 55.8 0.3 1.8 1 0 0 1 1 1 1 Anticodon binding domain SIS PF01380.22 gi|449068312|ref|YP_007435394.1| - 4.3e-48 162.5 1.4 1.1e-25 90.0 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|449068312|ref|YP_007435394.1| - 1.5e-20 73.8 0.0 3.3e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|449068312|ref|YP_007435394.1| - 1.3e-17 63.8 0.0 3.6e-17 62.4 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|449068312|ref|YP_007435394.1| - 2.7e-06 27.5 0.1 0.002 18.1 0.0 3.2 2 1 0 3 3 3 1 SIS domain GATase_4 PF13230.6 gi|449068312|ref|YP_007435394.1| - 0.0017 17.3 0.0 0.0032 16.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GHMP_kinases_C PF08544.13 gi|449068313|ref|YP_007435395.1| - 9.5e-11 41.9 0.2 3e-10 40.3 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|449068313|ref|YP_007435395.1| - 4.9e-09 36.3 1.2 6.6e-09 35.9 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF2666 PF10869.8 gi|449068313|ref|YP_007435395.1| - 0.079 13.2 3.9 1.8 8.8 0.4 3.0 2 2 2 4 4 4 0 Protein of unknown function (DUF2666) NTP_transferase PF00483.23 gi|449068314|ref|YP_007435396.1| - 3.3e-16 59.6 0.4 9.6e-15 54.8 0.4 2.1 1 1 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|449068314|ref|YP_007435396.1| - 2.1e-13 49.4 8.1 1.2e-06 28.0 2.1 4.8 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|449068314|ref|YP_007435396.1| - 1e-12 48.7 0.0 1.7e-12 48.0 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.12 gi|449068314|ref|YP_007435396.1| - 0.0026 16.8 3.5 0.021 13.8 3.3 2.2 1 1 0 1 1 1 1 L-fucokinase Glycos_transf_2 PF00535.26 gi|449068314|ref|YP_007435396.1| - 0.0047 16.7 0.0 0.0071 16.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Hexapep_2 PF14602.6 gi|449068314|ref|YP_007435396.1| - 0.0063 16.3 6.8 4.6 7.1 0.2 3.9 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase CofC PF01983.16 gi|449068314|ref|YP_007435396.1| - 0.039 13.1 2.7 0.071 12.3 0.2 2.1 2 0 0 2 2 2 0 Guanylyl transferase CofC like T6PP_N PF18572.1 gi|449068316|ref|YP_007435398.1| - 0.082 12.7 1.0 0.23 11.3 1.0 1.8 1 1 0 1 1 1 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain Semialdhyde_dh PF01118.24 gi|449068317|ref|YP_007435399.1| - 5e-31 107.6 0.0 5.2e-30 104.4 0.0 2.4 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|449068317|ref|YP_007435399.1| - 1.4e-22 80.7 0.1 2e-22 80.1 0.1 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Gp_dh_C PF02800.20 gi|449068317|ref|YP_007435399.1| - 0.054 13.1 0.1 0.33 10.5 0.1 2.1 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Methyltransf_25 PF13649.6 gi|449068318|ref|YP_007435400.1| - 4.1e-18 65.9 0.0 8.6e-18 64.9 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|449068318|ref|YP_007435400.1| - 6.2e-15 55.6 0.0 3.5e-14 53.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|449068318|ref|YP_007435400.1| - 1.2e-12 47.8 0.0 1.7e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|449068318|ref|YP_007435400.1| - 1.6e-11 44.3 0.0 2.3e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|449068318|ref|YP_007435400.1| - 3.5e-10 40.5 0.0 6.5e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|449068318|ref|YP_007435400.1| - 2.9e-09 36.6 0.0 4.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|449068318|ref|YP_007435400.1| - 1.6e-06 27.7 0.1 2.6e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB CheR PF01739.18 gi|449068318|ref|YP_007435400.1| - 2e-05 24.2 0.3 0.0092 15.5 0.1 2.4 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain MTS PF05175.14 gi|449068318|ref|YP_007435400.1| - 7.7e-05 22.3 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|449068318|ref|YP_007435400.1| - 0.00018 21.2 0.0 0.00032 20.4 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) N6_N4_Mtase PF01555.18 gi|449068318|ref|YP_007435400.1| - 0.00026 20.8 0.0 0.14 11.8 0.0 2.4 2 0 0 2 2 2 2 DNA methylase CMAS PF02353.20 gi|449068318|ref|YP_007435400.1| - 0.00092 18.6 0.0 0.0016 17.8 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|449068318|ref|YP_007435400.1| - 0.0025 17.8 0.0 0.0037 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N2227 PF07942.12 gi|449068318|ref|YP_007435400.1| - 0.0041 16.4 0.0 0.076 12.2 0.0 2.5 1 1 0 2 2 2 1 N2227-like protein Methyltransf_PK PF05891.12 gi|449068318|ref|YP_007435400.1| - 0.0047 16.5 0.1 0.0071 15.9 0.1 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase MethyltransfD12 PF02086.15 gi|449068318|ref|YP_007435400.1| - 0.011 15.4 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase DUF268 PF03269.14 gi|449068318|ref|YP_007435400.1| - 0.027 14.3 0.0 0.7 9.7 0.0 2.3 2 0 0 2 2 2 0 Caenorhabditis protein of unknown function, DUF268 TrkA_N PF02254.18 gi|449068318|ref|YP_007435400.1| - 0.036 14.3 0.1 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 TrkA-N domain Methyltransf_18 PF12847.7 gi|449068318|ref|YP_007435400.1| - 0.066 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain OCD_Mu_crystall PF02423.15 gi|449068319|ref|YP_007435401.1| - 2.2e-42 145.1 0.2 2.7e-42 144.8 0.2 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|449068319|ref|YP_007435401.1| - 6.1e-05 23.1 0.0 0.00011 22.3 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|449068319|ref|YP_007435401.1| - 0.0043 16.4 0.0 0.0079 15.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ssl1 PF04056.14 gi|449068319|ref|YP_007435401.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Ssl1-like Cob_adeno_trans PF01923.18 gi|449068320|ref|YP_007435402.1| - 2e-45 154.9 0.0 2.4e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Mistic PF11458.8 gi|449068320|ref|YP_007435402.1| - 0.23 11.4 1.6 1.2 9.2 0.7 2.4 2 1 0 2 2 2 0 Membrane-integrating protein Mistic Peptidase_S8 PF00082.22 gi|449068321|ref|YP_007435403.1| - 6.6e-06 25.6 0.4 1.3e-05 24.6 0.4 1.4 1 0 0 1 1 1 1 Subtilase family Pro-kuma_activ PF09286.11 gi|449068321|ref|YP_007435403.1| - 0.0016 18.8 0.0 0.0061 16.9 0.0 2.0 2 0 0 2 2 2 1 Pro-kumamolisin, activation domain Alph_Pro_TM PF09608.10 gi|449068321|ref|YP_007435403.1| - 0.068 13.0 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative transmembrane protein (Alph_Pro_TM) Iso_dh PF00180.20 gi|449068322|ref|YP_007435404.1| - 1.1e-104 350.4 0.1 1.3e-104 350.2 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase P22_Tail-4 PF11650.8 gi|449068322|ref|YP_007435404.1| - 0.06 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 P22 tail accessory factor Dodecin PF07311.12 gi|449068322|ref|YP_007435404.1| - 0.4 11.0 0.1 0.4 11.0 0.1 2.2 3 0 0 3 3 3 0 Dodecin # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_acidocaldarius_N8_uid189027/NC_020246.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_acidocaldarius_N8_uid189027/NC_020246.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_acidocaldarius_N8_uid189027/NC_020246.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_acidocaldarius_N8_uid189027/NC_020246.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:28:15 2019 # [ok]