# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- ATP_bind_3 PF01171.20 gi|126464914|ref|YP_001040023.1| - 8.7e-12 45.2 0.0 2.5e-10 40.4 0.0 2.7 2 1 0 2 2 2 1 PP-loop family zn-ribbon_14 PF16503.5 gi|126464914|ref|YP_001040023.1| - 0.0012 18.3 2.0 0.0012 18.3 2.0 2.8 3 1 0 3 3 3 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|126464914|ref|YP_001040023.1| - 0.013 14.4 0.0 0.017 13.9 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase RecR PF02132.15 gi|126464914|ref|YP_001040023.1| - 0.036 13.6 2.0 0.036 13.6 2.0 2.9 3 0 0 3 3 3 0 RecR protein PAPS_reduct PF01507.19 gi|126464914|ref|YP_001040023.1| - 0.12 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family C5HCH PF17982.1 gi|126464914|ref|YP_001040023.1| - 0.89 9.8 0.1 0.89 9.8 0.1 2.5 3 0 0 3 3 3 0 NSD Cys-His rich domain YyzF PF14116.6 gi|126464914|ref|YP_001040023.1| - 2.4 8.3 4.3 18 5.4 0.1 3.1 3 0 0 3 3 3 0 YyzF-like protein Ribosomal_S14 PF00253.21 gi|126464914|ref|YP_001040023.1| - 8.8 6.2 6.5 20 5.0 0.1 3.3 3 0 0 3 3 3 0 Ribosomal protein S14p/S29e CbiM PF01891.16 gi|126464915|ref|YP_001040024.1| - 4.1e-64 216.2 16.3 4.6e-64 216.1 16.3 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 gi|126464916|ref|YP_001040025.1| - 3.5e-06 26.8 0.1 5.6e-06 26.2 0.1 1.5 1 1 0 1 1 1 1 PDGLE domain Yip1 PF04893.17 gi|126464916|ref|YP_001040025.1| - 0.039 13.7 3.0 0.047 13.4 3.0 1.1 1 0 0 1 1 1 0 Yip1 domain PHO4 PF01384.20 gi|126464916|ref|YP_001040025.1| - 3.1 6.7 7.2 35 3.3 7.5 1.9 1 1 0 1 1 1 0 Phosphate transporter family CbiQ PF02361.16 gi|126464917|ref|YP_001040026.1| - 5.5e-06 26.2 10.4 5.5e-06 26.2 10.4 1.7 1 1 1 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|126464918|ref|YP_001040027.1| - 2.7e-28 99.2 0.0 4e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126464918|ref|YP_001040027.1| - 4.3e-12 46.5 0.1 5.9e-06 26.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126464918|ref|YP_001040027.1| - 2.1e-07 30.6 0.2 0.00064 19.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126464918|ref|YP_001040027.1| - 0.00024 21.7 0.4 0.00024 21.7 0.4 2.1 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|126464918|ref|YP_001040027.1| - 0.0014 18.6 0.4 0.0024 17.8 0.3 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|126464918|ref|YP_001040027.1| - 0.0062 16.5 1.1 0.91 9.4 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.6 gi|126464918|ref|YP_001040027.1| - 0.008 16.4 0.0 0.02 15.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126464918|ref|YP_001040027.1| - 0.0086 15.8 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain TK PF00265.18 gi|126464918|ref|YP_001040027.1| - 0.011 15.6 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase AAA_30 PF13604.6 gi|126464918|ref|YP_001040027.1| - 0.02 14.6 0.0 0.078 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|126464918|ref|YP_001040027.1| - 0.033 12.9 0.1 0.094 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|126464918|ref|YP_001040027.1| - 0.039 13.2 0.0 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin NACHT PF05729.12 gi|126464918|ref|YP_001040027.1| - 0.054 13.4 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|126464918|ref|YP_001040027.1| - 0.055 13.7 0.1 0.38 11.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|126464918|ref|YP_001040027.1| - 0.058 13.4 0.7 0.33 11.0 0.7 2.3 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|126464918|ref|YP_001040027.1| - 0.071 13.0 0.0 0.62 10.0 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase ResIII PF04851.15 gi|126464918|ref|YP_001040027.1| - 0.073 13.1 0.3 2.6 8.0 0.0 2.2 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit CobA_CobO_BtuR PF02572.15 gi|126464918|ref|YP_001040027.1| - 0.097 12.9 0.1 0.28 11.4 0.1 1.7 1 1 1 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_18 PF13238.6 gi|126464918|ref|YP_001040027.1| - 0.11 13.1 1.0 3 8.4 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|126464918|ref|YP_001040027.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126464918|ref|YP_001040027.1| - 0.17 12.3 0.0 0.3 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|126464918|ref|YP_001040027.1| - 0.17 11.4 0.5 0.49 10.0 0.1 1.9 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|126464918|ref|YP_001040027.1| - 0.18 10.8 0.0 1.1 8.2 0.0 2.1 2 1 0 2 2 2 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|126464918|ref|YP_001040027.1| - 0.19 11.0 0.0 0.69 9.1 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|126464918|ref|YP_001040027.1| - 0.19 11.5 0.0 0.37 10.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain NikR_C PF08753.11 gi|126464919|ref|YP_001040028.1| - 6.8e-27 93.4 1.6 1.1e-26 92.8 1.6 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|126464919|ref|YP_001040028.1| - 0.00057 19.8 0.1 0.0014 18.6 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|126464919|ref|YP_001040028.1| - 0.025 14.5 0.0 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|126464919|ref|YP_001040028.1| - 0.067 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PfkB PF00294.24 gi|126464920|ref|YP_001040029.1| - 4.5e-53 180.5 0.0 5.3e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|126464920|ref|YP_001040029.1| - 5.6e-07 29.2 0.0 8.6e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ComA PF02679.15 gi|126464920|ref|YP_001040029.1| - 0.08 12.4 0.0 0.17 11.3 0.0 1.4 1 1 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DAO PF01266.24 gi|126464921|ref|YP_001040030.1| - 5.6e-55 187.3 0.0 6.3e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|126464921|ref|YP_001040030.1| - 3.3e-06 26.6 0.4 0.013 14.8 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126464921|ref|YP_001040030.1| - 1.8e-05 25.2 0.6 0.045 14.3 0.2 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|126464921|ref|YP_001040030.1| - 2.4e-05 23.7 0.0 0.12 11.6 0.0 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|126464921|ref|YP_001040030.1| - 0.00043 19.5 0.0 0.067 12.3 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|126464921|ref|YP_001040030.1| - 0.0016 17.8 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Shikimate_DH PF01488.20 gi|126464921|ref|YP_001040030.1| - 0.0016 18.5 0.1 0.0041 17.2 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|126464921|ref|YP_001040030.1| - 0.0017 18.5 0.1 0.0042 17.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|126464921|ref|YP_001040030.1| - 0.0021 18.0 0.4 0.077 13.0 0.1 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|126464921|ref|YP_001040030.1| - 0.012 14.3 0.9 0.7 8.5 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.17 gi|126464921|ref|YP_001040030.1| - 0.023 14.0 0.9 2.1 7.5 0.1 2.2 2 0 0 2 2 2 0 Thi4 family SO_alpha_A3 PF17806.1 gi|126464922|ref|YP_001040031.1| - 5.9e-17 61.8 0.0 6.8e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|126464922|ref|YP_001040031.1| - 1.5e-13 50.9 0.4 1.8e-13 50.6 0.4 1.1 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Fer4 PF00037.27 gi|126464923|ref|YP_001040032.1| - 1.2e-10 40.7 18.3 1.4e-07 31.0 4.0 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126464923|ref|YP_001040032.1| - 1.2e-08 35.4 7.4 2.6e-08 34.3 7.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126464923|ref|YP_001040032.1| - 1.5e-07 31.4 6.3 0.00076 19.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126464923|ref|YP_001040032.1| - 2.2e-07 30.6 15.6 2.6e-05 24.1 2.7 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126464923|ref|YP_001040032.1| - 4.2e-06 26.8 9.2 7.7e-06 26.0 9.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126464923|ref|YP_001040032.1| - 1.3e-05 25.6 0.5 0.0033 17.8 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126464923|ref|YP_001040032.1| - 2.7e-05 24.2 12.2 5e-05 23.3 12.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126464923|ref|YP_001040032.1| - 4.6e-05 23.6 8.9 7.6e-05 22.9 0.9 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126464923|ref|YP_001040032.1| - 0.00019 21.3 16.7 0.0004 20.3 5.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126464923|ref|YP_001040032.1| - 0.00032 21.6 11.9 0.0076 17.2 1.0 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|126464923|ref|YP_001040032.1| - 0.0016 19.1 5.8 0.0034 18.1 0.3 3.0 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|126464923|ref|YP_001040032.1| - 0.012 16.1 10.3 0.027 15.0 1.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126464923|ref|YP_001040032.1| - 0.031 14.8 1.5 0.031 14.8 1.5 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|126464923|ref|YP_001040032.1| - 0.053 14.5 15.8 0.8 10.8 6.6 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126464923|ref|YP_001040032.1| - 2.8 8.1 10.8 8.9 6.5 10.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126464923|ref|YP_001040032.1| - 3.7 8.5 9.5 0.29 12.0 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.14 gi|126464924|ref|YP_001040033.1| - 2.5e-25 89.3 0.4 3.5e-25 88.8 0.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer2_4 PF13510.6 gi|126464924|ref|YP_001040033.1| - 4.5e-21 74.7 0.0 8.4e-21 73.8 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_3 PF13738.6 gi|126464924|ref|YP_001040033.1| - 5.1e-09 35.8 0.5 0.0014 18.0 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|126464924|ref|YP_001040033.1| - 2.4e-08 34.1 4.8 9.8e-05 22.5 0.4 3.0 2 1 1 3 3 3 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|126464924|ref|YP_001040033.1| - 2.5e-08 33.6 5.2 4.8e-06 26.1 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|126464924|ref|YP_001040033.1| - 7.7e-07 29.6 2.7 0.024 15.2 0.0 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|126464924|ref|YP_001040033.1| - 1.1e-06 28.1 6.2 3.1e-05 23.2 1.0 3.5 2 2 2 4 4 4 1 FAD binding domain FAD_oxidored PF12831.7 gi|126464924|ref|YP_001040033.1| - 2e-06 27.5 2.5 3.2e-06 26.8 0.1 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|126464924|ref|YP_001040033.1| - 5.4e-06 25.7 6.8 0.003 16.7 0.0 3.7 4 0 0 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|126464924|ref|YP_001040033.1| - 2.2e-05 23.9 1.1 0.0018 17.5 0.0 2.4 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|126464924|ref|YP_001040033.1| - 2.2e-05 24.2 0.7 0.038 13.6 0.0 2.6 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|126464924|ref|YP_001040033.1| - 7.9e-05 23.0 0.3 0.19 12.2 0.0 2.9 2 1 0 2 2 2 2 Putative NAD(P)-binding HI0933_like PF03486.14 gi|126464924|ref|YP_001040033.1| - 0.00015 20.6 1.8 0.00078 18.3 0.1 2.3 2 0 0 2 2 2 1 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 gi|126464924|ref|YP_001040033.1| - 0.0059 16.2 2.2 1.9 8.0 0.1 2.9 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|126464924|ref|YP_001040033.1| - 0.031 13.9 0.2 0.031 13.9 0.2 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|126464924|ref|YP_001040033.1| - 0.054 12.8 0.0 0.054 12.8 0.0 2.4 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|126464924|ref|YP_001040033.1| - 0.24 11.4 4.0 3.2 7.7 0.2 3.7 4 0 0 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|126464924|ref|YP_001040033.1| - 2.7 7.0 6.2 0.32 10.0 0.7 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|126464924|ref|YP_001040033.1| - 5.6 6.8 5.2 19 5.1 0.0 2.8 3 0 0 3 3 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRS_C PF02769.22 gi|126464925|ref|YP_001040034.1| - 1.5e-23 83.7 0.1 2.1e-23 83.2 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|126464925|ref|YP_001040034.1| - 5.6e-17 62.2 0.1 1.6e-16 60.7 0.1 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Myosin_N PF02736.19 gi|126464925|ref|YP_001040034.1| - 0.13 12.1 1.2 0.46 10.4 0.1 2.5 3 0 0 3 3 3 0 Myosin N-terminal SH3-like domain HupF_HypC PF01455.18 gi|126464926|ref|YP_001040035.1| - 4.8e-19 68.3 0.4 5.5e-19 68.1 0.4 1.0 1 0 0 1 1 1 1 HupF/HypC family Glyco_hydro_38N PF01074.22 gi|126464927|ref|YP_001040036.1| - 3.2e-56 190.8 0.0 5e-56 190.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|126464927|ref|YP_001040036.1| - 7e-44 150.5 0.0 1.8e-43 149.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|126464927|ref|YP_001040036.1| - 2.5e-18 66.0 0.1 5.2e-18 65.0 0.1 1.6 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|126464927|ref|YP_001040036.1| - 8.1e-09 35.5 0.2 2.1e-08 34.2 0.2 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Mst1_SARAH PF11629.8 gi|126464927|ref|YP_001040036.1| - 0.089 12.9 0.1 0.27 11.3 0.1 1.8 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 Sua5_yciO_yrdC PF01300.18 gi|126464928|ref|YP_001040037.1| - 8.8e-43 145.9 0.0 1.3e-42 145.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|126464928|ref|YP_001040037.1| - 9.7e-30 102.0 9.0 7e-16 57.7 3.1 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|126464928|ref|YP_001040037.1| - 1.5e-23 83.4 0.0 2.8e-23 82.6 0.0 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|126464928|ref|YP_001040037.1| - 2e-21 76.2 0.0 3.7e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Gin PF10764.9 gi|126464928|ref|YP_001040037.1| - 0.15 12.0 2.2 3.4 7.7 0.1 2.6 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin Beta_propel PF09826.9 gi|126464929|ref|YP_001040038.1| - 4.4e-113 378.9 11.6 5.3e-113 378.6 11.6 1.1 1 0 0 1 1 1 1 Beta propeller domain HTH_24 PF13412.6 gi|126464930|ref|YP_001040039.1| - 1.3e-10 40.7 0.0 3e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126464930|ref|YP_001040039.1| - 1.5e-10 40.7 0.0 2.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126464930|ref|YP_001040039.1| - 9.1e-08 32.1 0.0 1.5e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|126464930|ref|YP_001040039.1| - 4.9e-07 29.5 0.2 7.7e-07 28.9 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|126464930|ref|YP_001040039.1| - 1.8e-06 27.7 0.0 3.2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|126464930|ref|YP_001040039.1| - 1.2e-05 25.0 0.0 1.9e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|126464930|ref|YP_001040039.1| - 6.3e-05 23.1 0.2 0.00013 22.1 0.2 1.5 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|126464930|ref|YP_001040039.1| - 7.3e-05 22.6 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|126464930|ref|YP_001040039.1| - 0.00015 21.5 0.0 0.00022 20.9 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.12 gi|126464930|ref|YP_001040039.1| - 0.00024 21.0 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|126464930|ref|YP_001040039.1| - 0.00025 20.7 0.0 0.00053 19.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|126464930|ref|YP_001040039.1| - 0.00039 20.9 0.0 0.00062 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|126464930|ref|YP_001040039.1| - 0.00071 19.5 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|126464930|ref|YP_001040039.1| - 0.00094 19.1 0.0 0.0019 18.1 0.0 1.5 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain BLACT_WH PF17778.1 gi|126464930|ref|YP_001040039.1| - 0.0022 18.0 0.0 0.0045 16.9 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain HTH_40 PF14493.6 gi|126464930|ref|YP_001040039.1| - 0.0024 18.3 0.1 0.0055 17.1 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain TMEM135_C_rich PF15982.5 gi|126464930|ref|YP_001040039.1| - 0.003 18.2 0.8 0.0041 17.7 0.8 1.2 1 0 0 1 1 1 1 N-terminal cysteine-rich region of Transmembrane protein 135 HTH_micro PF17007.5 gi|126464930|ref|YP_001040039.1| - 0.0038 16.1 0.2 0.0046 15.8 0.2 1.1 1 0 0 1 1 1 1 HTH-like Sigma70_r4_2 PF08281.12 gi|126464930|ref|YP_001040039.1| - 0.0048 16.5 0.0 0.0094 15.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|126464930|ref|YP_001040039.1| - 0.0064 16.0 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family B-block_TFIIIC PF04182.12 gi|126464930|ref|YP_001040039.1| - 0.0069 16.5 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_10 PF04967.12 gi|126464930|ref|YP_001040039.1| - 0.009 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_29 PF13551.6 gi|126464930|ref|YP_001040039.1| - 0.012 15.7 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|126464930|ref|YP_001040039.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain CtsR PF05848.11 gi|126464930|ref|YP_001040039.1| - 0.019 14.9 0.1 0.055 13.4 0.1 1.8 1 1 0 1 1 1 0 CtsR N-terminal HTH domain Rrf2 PF02082.20 gi|126464930|ref|YP_001040039.1| - 0.028 14.8 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|126464930|ref|YP_001040039.1| - 0.048 13.5 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TetR_N PF00440.23 gi|126464930|ref|YP_001040039.1| - 0.067 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family RepL PF05732.11 gi|126464930|ref|YP_001040039.1| - 0.084 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Terminase_5 PF06056.12 gi|126464930|ref|YP_001040039.1| - 0.088 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|126464930|ref|YP_001040039.1| - 0.17 12.0 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2633 PF11119.8 gi|126464930|ref|YP_001040039.1| - 0.32 10.9 0.1 0.32 10.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2633) Oxidored_q6 PF01058.22 gi|126464931|ref|YP_001040040.1| - 6.1e-32 110.2 0.1 7.5e-32 109.9 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|126464932|ref|YP_001040041.1| - 4.4e-15 56.4 0.0 6.3e-15 55.9 0.0 1.2 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|126464933|ref|YP_001040042.1| - 1.7e-67 227.4 0.2 1.1e-64 218.2 0.2 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|126464933|ref|YP_001040042.1| - 2.5e-12 46.5 4.6 4.9e-10 38.9 0.3 3.7 4 0 0 4 4 4 2 Nickel-dependent hydrogenase CMV_1a_C PF12503.8 gi|126464933|ref|YP_001040042.1| - 0.078 13.0 0.2 0.17 11.9 0.2 1.5 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein C terminal MrpF_PhaF PF04066.13 gi|126464934|ref|YP_001040043.1| - 1.5e-13 50.9 1.8 1.5e-13 50.9 1.8 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|126464935|ref|YP_001040044.1| - 2.2e-15 56.7 11.7 3.3e-15 56.1 11.7 1.3 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|126464936|ref|YP_001040045.1| - 1.5e-12 47.5 7.0 1.5e-12 47.5 7.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Trep_Strep PF09605.10 gi|126464936|ref|YP_001040045.1| - 0.0034 17.4 1.3 0.0034 17.4 1.3 1.8 2 0 0 2 2 2 1 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF5438 PF17506.2 gi|126464936|ref|YP_001040045.1| - 0.057 13.8 1.5 0.073 13.4 1.0 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5438) DUF2070 PF09843.9 gi|126464936|ref|YP_001040045.1| - 0.062 11.6 9.9 0.063 11.6 9.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CreD PF06123.12 gi|126464936|ref|YP_001040045.1| - 0.22 10.3 7.2 0.22 10.2 7.2 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD DUF5325 PF17259.2 gi|126464936|ref|YP_001040045.1| - 1.3 9.0 7.3 0.33 10.8 3.1 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5325) MnhB PF04039.13 gi|126464937|ref|YP_001040046.1| - 6.1e-22 78.2 12.7 6.1e-22 78.2 12.7 2.4 3 0 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter Glycophorin_A PF01102.18 gi|126464937|ref|YP_001040046.1| - 1.2 9.4 4.1 13 6.0 0.1 3.3 3 0 0 3 3 3 0 Glycophorin A Oxidored_q2 PF00420.24 gi|126464938|ref|YP_001040047.1| - 3.4e-21 74.8 2.4 4.8e-21 74.4 2.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MatE PF01554.18 gi|126464938|ref|YP_001040047.1| - 0.081 12.6 6.0 1 9.0 0.6 2.2 2 1 0 2 2 2 0 MatE Curto_V3 PF07436.11 gi|126464938|ref|YP_001040047.1| - 0.21 12.0 1.4 0.41 11.1 0.2 1.9 2 0 0 2 2 2 0 Curtovirus V3 protein DUF5585 PF17823.1 gi|126464938|ref|YP_001040047.1| - 0.27 10.1 0.6 0.33 9.8 0.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5585) DUF5455 PF17537.2 gi|126464938|ref|YP_001040047.1| - 0.56 10.6 6.4 7.1 7.1 0.1 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5455) DUF4538 PF15061.6 gi|126464938|ref|YP_001040047.1| - 0.58 9.9 0.1 0.58 9.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) MNHE PF01899.16 gi|126464939|ref|YP_001040048.1| - 7.5e-44 149.0 0.6 8.6e-44 148.8 0.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit EamA PF00892.20 gi|126464939|ref|YP_001040048.1| - 0.11 12.7 6.7 0.18 11.9 6.7 1.3 1 0 0 1 1 1 0 EamA-like transporter family PRA1 PF03208.19 gi|126464939|ref|YP_001040048.1| - 0.14 11.8 3.9 0.22 11.1 3.9 1.3 1 0 0 1 1 1 0 PRA1 family protein DUF2556 PF10831.8 gi|126464939|ref|YP_001040048.1| - 0.71 9.9 9.2 1.9 8.5 1.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2556) DUF4229 PF14012.6 gi|126464939|ref|YP_001040048.1| - 4.6 7.4 7.7 0.49 10.5 3.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Proton_antipo_M PF00361.20 gi|126464940|ref|YP_001040049.1| - 4.1e-53 180.5 26.1 4.1e-53 180.5 26.1 2.3 3 0 0 3 3 3 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|126464940|ref|YP_001040049.1| - 1.5e-09 37.6 5.8 1.5e-09 37.6 5.8 3.2 3 1 1 4 4 4 1 NADH dehydrogenase I, subunit N related protein DUF2644 PF10841.8 gi|126464940|ref|YP_001040049.1| - 4.4 7.6 9.8 0.85 9.9 0.2 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2644) DUF1294 PF06961.13 gi|126464940|ref|YP_001040049.1| - 5.1 7.4 6.5 0.92 9.8 1.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) DUF4064 PF13273.6 gi|126464941|ref|YP_001040050.1| - 0.0063 16.8 4.7 0.023 14.9 4.7 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF4064) DUF2207 PF09972.9 gi|126464941|ref|YP_001040050.1| - 0.27 10.0 1.0 0.32 9.7 1.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PepSY_TM PF03929.16 gi|126464941|ref|YP_001040050.1| - 1.1 8.9 4.3 0.29 10.8 0.3 1.8 1 1 1 2 2 2 0 PepSY-associated TM region NADHdh PF00146.21 gi|126464942|ref|YP_001040051.1| - 2.2e-50 171.7 18.9 2.6e-50 171.4 18.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Glutaredoxin PF00462.24 gi|126464943|ref|YP_001040052.1| - 0.0065 16.7 0.1 0.014 15.6 0.1 1.5 1 0 0 1 1 1 1 Glutaredoxin zf-LITAF-like PF10601.9 gi|126464943|ref|YP_001040052.1| - 0.83 10.0 7.9 11 6.4 0.0 3.8 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain XdhC_C PF13478.6 gi|126464945|ref|YP_001040054.1| - 6.1e-30 104.3 0.0 9.3e-30 103.7 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|126464945|ref|YP_001040054.1| - 5.5e-18 64.9 0.0 8.9e-18 64.2 0.0 1.3 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.18 gi|126464945|ref|YP_001040054.1| - 0.00012 22.3 0.0 0.00026 21.2 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain PglD_N PF17836.1 gi|126464945|ref|YP_001040054.1| - 0.008 16.8 0.4 0.02 15.6 0.4 1.7 1 0 0 1 1 1 1 PglD N-terminal domain 2-Hacid_dh_C PF02826.19 gi|126464945|ref|YP_001040054.1| - 0.01 15.2 0.5 0.075 12.4 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|126464945|ref|YP_001040054.1| - 0.054 12.8 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|126464945|ref|YP_001040054.1| - 0.08 12.2 0.0 0.14 11.3 0.0 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF3543 PF12063.8 gi|126464945|ref|YP_001040054.1| - 0.18 11.2 0.6 0.41 10.0 0.3 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF3543) THUMP PF02926.17 gi|126464947|ref|YP_001040056.1| - 1.6e-05 25.0 0.7 2.3e-05 24.5 0.7 1.2 1 0 0 1 1 1 1 THUMP domain Nitroreductase PF00881.24 gi|126464949|ref|YP_001040058.1| - 9.9e-29 100.6 0.0 1.1e-28 100.4 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126464949|ref|YP_001040058.1| - 6.4e-06 25.9 0.3 0.0077 15.8 0.1 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase MtN3_slv PF03083.16 gi|126464949|ref|YP_001040058.1| - 0.082 13.0 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange PhoU_div PF01865.16 gi|126464950|ref|YP_001040059.1| - 1.6e-22 79.9 8.6 1.9e-22 79.6 8.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|126464950|ref|YP_001040059.1| - 0.0002 21.8 1.4 0.0002 21.8 1.4 2.3 2 0 0 2 2 2 1 PhoU domain Mod_r PF07200.13 gi|126464950|ref|YP_001040059.1| - 0.0029 17.7 4.3 0.0041 17.2 0.3 2.1 2 0 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein Med7 PF05983.11 gi|126464950|ref|YP_001040059.1| - 0.023 14.8 0.1 0.055 13.5 0.1 1.6 1 0 0 1 1 1 0 MED7 protein PTS_IIA PF02255.16 gi|126464950|ref|YP_001040059.1| - 0.026 14.6 0.4 9.2 6.4 0.1 2.4 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit ApoLp-III PF07464.11 gi|126464950|ref|YP_001040059.1| - 0.043 13.9 1.4 0.61 10.2 0.3 2.8 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) LUC7 PF03194.15 gi|126464950|ref|YP_001040059.1| - 0.084 12.5 1.4 0.1 12.3 0.4 1.6 1 1 1 2 2 2 0 LUC7 N_terminus Cas_DxTHG PF09455.10 gi|126464950|ref|YP_001040059.1| - 0.28 10.7 5.6 1.9 8.0 5.6 1.9 1 1 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family Syntaxin_2 PF14523.6 gi|126464950|ref|YP_001040059.1| - 0.31 11.4 3.1 4.4 7.7 0.1 2.8 2 1 1 3 3 3 0 Syntaxin-like protein DUF3837 PF12939.7 gi|126464950|ref|YP_001040059.1| - 0.32 11.4 2.9 5.7 7.4 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3837) LPP PF04728.13 gi|126464950|ref|YP_001040059.1| - 0.59 10.6 5.5 1.6 9.2 0.5 3.4 2 1 1 3 3 3 0 Lipoprotein leucine-zipper HisKA PF00512.25 gi|126464950|ref|YP_001040059.1| - 1 9.5 4.4 11 6.2 0.6 3.4 3 1 0 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF349 PF03993.12 gi|126464950|ref|YP_001040059.1| - 1.5 9.2 5.3 3.7 7.9 1.5 3.4 2 2 0 2 2 2 0 Domain of Unknown Function (DUF349) APG6_N PF17675.1 gi|126464950|ref|YP_001040059.1| - 3.1 8.3 9.2 13 6.3 6.8 2.7 2 1 0 2 2 2 0 Apg6 coiled-coil region CrgA PF06781.12 gi|126464951|ref|YP_001040060.1| - 0.097 12.7 0.6 0.097 12.7 0.6 2.6 3 0 0 3 3 3 0 Cell division protein CrgA ABC_tran PF00005.27 gi|126464952|ref|YP_001040061.1| - 1.2e-22 80.9 0.1 2.2e-10 41.2 0.0 3.2 2 2 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|126464952|ref|YP_001040061.1| - 7.4e-14 52.3 8.7 9.9e-05 22.3 0.0 4.2 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126464952|ref|YP_001040061.1| - 3e-06 27.9 4.0 0.00027 21.5 0.2 2.8 2 1 1 3 3 3 1 AAA domain SMC_N PF02463.19 gi|126464952|ref|YP_001040061.1| - 8.7e-06 25.3 1.3 0.24 10.8 0.2 3.2 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AFG1_ATPase PF03969.16 gi|126464952|ref|YP_001040061.1| - 7.8e-05 21.7 0.0 0.0033 16.4 0.0 2.4 3 0 0 3 3 3 1 AFG1-like ATPase AAA_29 PF13555.6 gi|126464952|ref|YP_001040061.1| - 0.00029 20.5 0.9 0.069 12.9 0.3 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126464952|ref|YP_001040061.1| - 0.0028 17.4 9.8 0.012 15.4 0.7 3.5 2 1 1 3 3 3 1 AAA ATPase domain NTPase_1 PF03266.15 gi|126464952|ref|YP_001040061.1| - 0.003 17.5 7.0 1.5 8.7 0.1 3.7 3 1 0 3 3 3 2 NTPase AAA_22 PF13401.6 gi|126464952|ref|YP_001040061.1| - 0.0043 17.3 0.0 2.7 8.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|126464952|ref|YP_001040061.1| - 0.013 16.0 3.9 2.4 8.6 1.0 3.5 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|126464952|ref|YP_001040061.1| - 0.026 14.1 1.3 0.69 9.5 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|126464952|ref|YP_001040061.1| - 0.036 13.4 0.5 0.86 8.9 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|126464952|ref|YP_001040061.1| - 0.046 14.0 0.1 0.26 11.5 0.1 2.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 gi|126464952|ref|YP_001040061.1| - 0.047 13.2 0.1 2.4 7.7 0.0 2.6 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|126464952|ref|YP_001040061.1| - 0.05 13.3 0.1 7.5 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|126464952|ref|YP_001040061.1| - 0.059 13.8 0.0 15 5.9 0.0 2.6 2 1 0 2 2 2 0 AAA ATPase domain PRK PF00485.18 gi|126464952|ref|YP_001040061.1| - 0.067 12.9 3.3 1.9 8.2 0.4 3.5 3 1 1 4 4 4 0 Phosphoribulokinase / Uridine kinase family AAA_35 PF14516.6 gi|126464952|ref|YP_001040061.1| - 0.078 11.8 0.0 0.24 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain RsgA_GTPase PF03193.16 gi|126464952|ref|YP_001040061.1| - 0.18 11.7 1.6 13 5.6 0.0 2.8 2 1 1 3 3 3 0 RsgA GTPase Zeta_toxin PF06414.12 gi|126464952|ref|YP_001040061.1| - 0.19 11.0 0.0 22 4.3 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin Roc PF08477.13 gi|126464952|ref|YP_001040061.1| - 0.49 10.6 2.7 21 5.3 0.5 2.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NACHT PF05729.12 gi|126464952|ref|YP_001040061.1| - 1 9.3 5.7 7.4 6.5 0.3 3.0 3 0 0 3 3 3 0 NACHT domain AAA_24 PF13479.6 gi|126464952|ref|YP_001040061.1| - 1.1 9.0 5.6 4.8 6.9 0.0 3.0 3 1 1 4 4 4 0 AAA domain MobB PF03205.14 gi|126464952|ref|YP_001040061.1| - 3 7.7 4.3 25 4.8 0.2 3.2 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B DNA_binding_1 PF01035.20 gi|126464954|ref|YP_001040063.1| - 3.1e-24 84.9 0.0 3.8e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain ADH_zinc_N PF00107.26 gi|126464954|ref|YP_001040063.1| - 0.16 12.0 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Rubrerythrin PF02915.17 gi|126464955|ref|YP_001040064.1| - 3.2e-30 105.3 0.7 3.9e-30 105.0 0.7 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|126464955|ref|YP_001040064.1| - 1.8e-06 27.9 0.1 3.4e-06 27.1 0.1 1.5 1 1 0 1 1 1 1 Ferritin-like domain Arc_PepC_II PF06847.11 gi|126464955|ref|YP_001040064.1| - 0.018 15.5 0.1 0.04 14.4 0.1 1.5 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II ADK_lid PF05191.14 gi|126464955|ref|YP_001040064.1| - 0.091 12.8 1.1 0.15 12.0 1.1 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid Rubredoxin PF00301.20 gi|126464955|ref|YP_001040064.1| - 0.14 12.2 2.6 2.4 8.2 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin zf-RRN7 PF11781.8 gi|126464955|ref|YP_001040064.1| - 0.19 11.4 1.0 14 5.5 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|126464955|ref|YP_001040064.1| - 0.2 11.7 2.1 3.7 7.6 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.16 gi|126464955|ref|YP_001040064.1| - 0.59 10.2 3.8 15 5.7 0.3 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|126464955|ref|YP_001040064.1| - 1 9.5 3.9 3.1 8.0 3.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Zn-C2H2_12 PF18112.1 gi|126464955|ref|YP_001040064.1| - 2.8 8.5 5.9 28 5.3 0.6 2.7 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Lon_C PF05362.13 gi|126464956|ref|YP_001040065.1| - 4.1e-10 39.5 0.1 8.7e-10 38.5 0.1 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain TMEM135_C_rich PF15982.5 gi|126464956|ref|YP_001040065.1| - 0.042 14.5 0.3 0.042 14.5 0.3 3.3 2 1 1 3 3 3 0 N-terminal cysteine-rich region of Transmembrane protein 135 Fe-ADH PF00465.19 gi|126464957|ref|YP_001040066.1| - 4.3e-88 295.6 0.0 4.8e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|126464957|ref|YP_001040066.1| - 1.5e-15 57.6 0.3 1.6e-09 37.8 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Desulfoferrodox PF01880.18 gi|126464958|ref|YP_001040067.1| - 1.5e-31 108.9 0.1 1.8e-31 108.6 0.1 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|126464958|ref|YP_001040067.1| - 1e-09 38.6 0.0 1.5e-09 38.1 0.0 1.3 1 1 0 1 1 1 1 Sulfur oxidation protein SoxY HTH_24 PF13412.6 gi|126464960|ref|YP_001040069.1| - 2.4e-18 65.4 1.6 3.2e-17 61.8 1.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|126464960|ref|YP_001040069.1| - 5e-17 61.5 0.6 8e-17 60.8 0.6 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|126464960|ref|YP_001040069.1| - 3.3e-09 36.6 0.0 6.1e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|126464960|ref|YP_001040069.1| - 2.8e-08 33.6 0.4 2.8e-08 33.6 0.4 2.2 3 0 0 3 3 2 1 HTH domain TrmB PF01978.19 gi|126464960|ref|YP_001040069.1| - 6.1e-06 26.0 0.4 3.2e-05 23.7 0.3 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|126464960|ref|YP_001040069.1| - 7.9e-06 25.8 0.0 2.3e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|126464960|ref|YP_001040069.1| - 9.6e-06 25.4 0.0 7.1e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.6 gi|126464960|ref|YP_001040069.1| - 9.7e-05 22.5 0.2 0.0005 20.2 0.1 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|126464960|ref|YP_001040069.1| - 0.00015 21.5 0.0 0.00023 20.9 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix B-block_TFIIIC PF04182.12 gi|126464960|ref|YP_001040069.1| - 0.00021 21.4 0.6 0.13 12.4 0.1 2.4 1 1 1 2 2 2 2 B-block binding subunit of TFIIIC HTH_20 PF12840.7 gi|126464960|ref|YP_001040069.1| - 0.00051 20.1 0.0 0.0007 19.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|126464960|ref|YP_001040069.1| - 0.00052 20.0 0.0 0.0013 18.8 0.0 1.8 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|126464960|ref|YP_001040069.1| - 0.001 18.9 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|126464960|ref|YP_001040069.1| - 0.0018 18.6 0.1 0.016 15.5 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|126464960|ref|YP_001040069.1| - 0.0018 18.1 0.0 0.007 16.2 0.0 1.9 2 0 0 2 2 2 1 MarR family NapD PF03927.13 gi|126464960|ref|YP_001040069.1| - 0.0021 18.1 0.0 0.004 17.2 0.0 1.4 1 0 0 1 1 1 1 NapD protein Fe_dep_repress PF01325.19 gi|126464960|ref|YP_001040069.1| - 0.0039 17.3 0.0 0.35 11.1 0.0 2.2 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|126464960|ref|YP_001040069.1| - 0.0044 16.9 1.1 0.042 13.7 0.4 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|126464960|ref|YP_001040069.1| - 0.0065 16.9 0.2 0.011 16.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|126464960|ref|YP_001040069.1| - 0.0086 16.0 0.0 0.037 14.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain PRORP PF16953.5 gi|126464960|ref|YP_001040069.1| - 0.013 15.0 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 Protein-only RNase P HTH_10 PF04967.12 gi|126464960|ref|YP_001040069.1| - 0.022 14.5 0.1 0.044 13.6 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|126464960|ref|YP_001040069.1| - 0.031 14.1 0.1 0.073 12.9 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_CodY PF08222.11 gi|126464960|ref|YP_001040069.1| - 0.032 13.8 0.1 0.054 13.1 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain FaeA PF04703.12 gi|126464960|ref|YP_001040069.1| - 0.033 14.6 0.2 0.055 13.8 0.2 1.3 1 0 0 1 1 1 0 FaeA-like protein AsnC_trans_reg2 PF17805.1 gi|126464960|ref|YP_001040069.1| - 0.05 13.8 0.0 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 AsnC-like ligand binding domain Sigma70_r4_2 PF08281.12 gi|126464960|ref|YP_001040069.1| - 0.056 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_50 PF18024.1 gi|126464960|ref|YP_001040069.1| - 0.073 12.7 0.0 0.18 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|126464960|ref|YP_001040069.1| - 0.074 12.6 0.1 2.3 7.8 0.1 2.3 2 0 0 2 2 2 0 winged helix-turn-helix RepL PF05732.11 gi|126464960|ref|YP_001040069.1| - 0.1 12.0 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_9 PF08221.11 gi|126464960|ref|YP_001040069.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phos_pyr_kin PF08543.12 gi|126464961|ref|YP_001040070.1| - 1.5e-91 306.2 1.1 2e-91 305.8 1.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|126464961|ref|YP_001040070.1| - 1.5e-66 223.0 0.9 2.8e-66 222.2 0.9 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|126464961|ref|YP_001040070.1| - 8.6e-11 41.7 0.1 1.7e-10 40.7 0.1 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|126464961|ref|YP_001040070.1| - 4.7e-05 22.9 0.7 8.2e-05 22.1 0.7 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|126464961|ref|YP_001040070.1| - 0.029 13.8 0.4 0.058 12.9 0.4 1.6 1 1 0 1 1 1 0 Carbohydrate kinase ABC_tran PF00005.27 gi|126464962|ref|YP_001040071.1| - 1.6e-45 154.9 0.0 5.5e-23 82.0 0.0 2.6 3 0 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 gi|126464962|ref|YP_001040071.1| - 1.2e-28 100.9 7.2 1.7e-10 41.2 0.0 4.2 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126464962|ref|YP_001040071.1| - 1.8e-13 50.4 0.1 0.0011 18.5 0.0 4.6 3 2 1 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126464962|ref|YP_001040071.1| - 9.2e-09 36.1 3.3 0.00022 21.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|126464962|ref|YP_001040071.1| - 1.8e-08 34.0 1.4 0.0035 17.0 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126464962|ref|YP_001040071.1| - 3.6e-08 33.5 2.6 0.0033 17.2 0.1 3.6 3 1 0 3 3 3 2 AAA ATPase domain T2SSE PF00437.20 gi|126464962|ref|YP_001040071.1| - 8.1e-08 31.7 2.1 0.0066 15.5 0.2 2.7 2 1 0 2 2 2 2 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|126464962|ref|YP_001040071.1| - 2e-07 31.1 3.6 0.017 15.0 0.0 3.3 4 0 0 4 4 3 2 RsgA GTPase AAA_16 PF13191.6 gi|126464962|ref|YP_001040071.1| - 2.8e-07 31.1 1.1 0.03 14.7 0.1 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.6 gi|126464962|ref|YP_001040071.1| - 3.1e-07 30.2 0.2 0.0042 16.7 0.1 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|126464962|ref|YP_001040071.1| - 3.5e-07 30.5 0.0 0.015 15.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|126464962|ref|YP_001040071.1| - 4.1e-07 29.9 1.7 0.08 12.7 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_30 PF13604.6 gi|126464962|ref|YP_001040071.1| - 1.6e-06 28.0 0.6 0.018 14.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|126464962|ref|YP_001040071.1| - 1.6e-06 28.4 4.0 0.0047 17.2 0.1 3.7 3 2 0 3 3 3 2 AAA domain ATPase_2 PF01637.18 gi|126464962|ref|YP_001040071.1| - 3.8e-06 27.0 1.3 0.0049 16.8 0.0 2.9 3 0 0 3 3 2 2 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|126464962|ref|YP_001040071.1| - 9.3e-06 25.7 1.1 0.04 14.0 0.1 3.7 2 2 2 4 4 4 1 AAA domain cobW PF02492.19 gi|126464962|ref|YP_001040071.1| - 1.1e-05 25.1 5.4 0.023 14.3 0.6 3.0 2 1 1 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|126464962|ref|YP_001040071.1| - 1.5e-05 25.0 3.6 0.037 13.9 0.1 2.9 3 1 0 3 3 2 2 NACHT domain Rad17 PF03215.15 gi|126464962|ref|YP_001040071.1| - 3.7e-05 23.7 0.1 0.14 12.1 0.0 2.7 3 0 0 3 3 2 2 Rad17 P-loop domain AAA PF00004.29 gi|126464962|ref|YP_001040071.1| - 4.7e-05 23.8 3.7 0.6 10.5 0.0 4.5 3 1 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|126464962|ref|YP_001040071.1| - 5.7e-05 22.6 0.8 0.11 11.8 0.2 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|126464962|ref|YP_001040071.1| - 7.3e-05 22.7 2.1 0.17 11.8 0.1 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|126464962|ref|YP_001040071.1| - 0.00013 22.5 0.2 0.83 10.2 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|126464962|ref|YP_001040071.1| - 0.00034 21.0 1.8 0.56 10.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|126464962|ref|YP_001040071.1| - 0.00042 19.7 0.7 0.11 11.9 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|126464962|ref|YP_001040071.1| - 0.00054 20.0 1.1 2.4 8.1 0.3 3.3 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) DEAD PF00270.29 gi|126464962|ref|YP_001040071.1| - 0.00055 19.7 0.1 0.45 10.3 0.0 3.6 4 1 0 4 4 4 1 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|126464962|ref|YP_001040071.1| - 0.00073 19.9 0.2 0.54 10.7 0.0 2.7 2 0 0 2 2 2 1 RNA helicase SRPRB PF09439.10 gi|126464962|ref|YP_001040071.1| - 0.00097 18.6 4.2 0.27 10.7 0.3 3.2 4 0 0 4 4 4 2 Signal recognition particle receptor beta subunit TsaE PF02367.17 gi|126464962|ref|YP_001040071.1| - 0.00099 19.1 0.2 2.4 8.2 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|126464962|ref|YP_001040071.1| - 0.0011 18.8 0.1 1.5 8.6 0.0 2.3 2 1 0 2 2 2 2 AAA domain Cytidylate_kin PF02224.18 gi|126464962|ref|YP_001040071.1| - 0.0012 18.7 1.2 1 9.0 0.0 3.2 3 0 0 3 3 3 1 Cytidylate kinase ATP_bind_1 PF03029.17 gi|126464962|ref|YP_001040071.1| - 0.0024 17.7 0.5 0.73 9.6 0.0 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|126464962|ref|YP_001040071.1| - 0.0044 16.3 0.3 0.89 8.8 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin NB-ARC PF00931.22 gi|126464962|ref|YP_001040071.1| - 0.0045 16.2 1.7 0.97 8.6 0.1 2.7 2 1 0 2 2 2 1 NB-ARC domain PIF1 PF05970.14 gi|126464962|ref|YP_001040071.1| - 0.0059 15.8 0.0 2.1 7.4 0.0 2.3 2 0 0 2 2 2 1 PIF1-like helicase PduV-EutP PF10662.9 gi|126464962|ref|YP_001040071.1| - 0.006 16.3 1.1 3.3 7.5 0.4 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|126464962|ref|YP_001040071.1| - 0.0067 16.0 0.1 2 7.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|126464962|ref|YP_001040071.1| - 0.0067 16.7 4.9 0.63 10.3 0.2 2.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|126464962|ref|YP_001040071.1| - 0.0087 15.5 0.2 4.4 6.7 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Septin PF00735.18 gi|126464962|ref|YP_001040071.1| - 0.0093 15.3 2.0 2.1 7.6 0.0 2.4 2 0 0 2 2 2 1 Septin Roc PF08477.13 gi|126464962|ref|YP_001040071.1| - 0.012 15.8 1.7 2.9 8.2 0.1 2.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|126464962|ref|YP_001040071.1| - 0.013 15.6 3.5 0.65 10.1 0.0 2.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|126464962|ref|YP_001040071.1| - 0.014 14.1 2.4 1.6 7.3 0.0 2.6 3 0 0 3 3 2 0 AAA domain IstB_IS21 PF01695.17 gi|126464962|ref|YP_001040071.1| - 0.018 14.7 0.8 3.5 7.3 0.1 2.7 3 0 0 3 3 2 0 IstB-like ATP binding protein RNA12 PF10443.9 gi|126464962|ref|YP_001040071.1| - 0.026 13.2 0.2 2.3 6.9 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein DnaB_C PF03796.15 gi|126464962|ref|YP_001040071.1| - 0.028 13.8 0.1 0.67 9.2 0.0 2.5 3 0 0 3 3 2 0 DnaB-like helicase C terminal domain Adeno_IVa2 PF02456.15 gi|126464962|ref|YP_001040071.1| - 0.03 13.1 0.4 0.42 9.4 0.0 2.2 2 0 0 2 2 2 0 Adenovirus IVa2 protein Pox_A32 PF04665.12 gi|126464962|ref|YP_001040071.1| - 0.031 13.8 4.6 1.9 7.9 0.0 2.7 3 0 0 3 3 2 0 Poxvirus A32 protein AAA_27 PF13514.6 gi|126464962|ref|YP_001040071.1| - 0.032 13.8 0.2 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Guanylate_kin PF00625.21 gi|126464962|ref|YP_001040071.1| - 0.036 13.8 0.2 2 8.0 0.0 2.5 2 0 0 2 2 2 0 Guanylate kinase CbiA PF01656.23 gi|126464962|ref|YP_001040071.1| - 0.037 14.1 2.9 0.25 11.4 0.1 2.8 3 1 0 3 3 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|126464962|ref|YP_001040071.1| - 0.053 13.1 6.0 1.3 8.6 0.4 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PRK PF00485.18 gi|126464962|ref|YP_001040071.1| - 0.054 13.2 0.3 1.2 8.8 0.0 2.5 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family CLP1_P PF16575.5 gi|126464962|ref|YP_001040071.1| - 0.055 13.2 0.2 4.2 7.1 0.0 2.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SbcCD_C PF13558.6 gi|126464962|ref|YP_001040071.1| - 0.062 13.5 0.0 10 6.4 0.0 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|126464962|ref|YP_001040071.1| - 0.11 11.4 0.6 9.1 5.0 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_35 PF14516.6 gi|126464962|ref|YP_001040071.1| - 0.11 11.2 0.0 1.5 7.5 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain DAP3 PF10236.9 gi|126464962|ref|YP_001040071.1| - 0.14 11.3 0.3 6.6 5.8 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ABC_ATPase PF09818.9 gi|126464962|ref|YP_001040071.1| - 0.17 10.7 2.4 0.27 10.0 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ATPase PF06745.13 gi|126464962|ref|YP_001040071.1| - 0.19 11.0 1.2 19 4.5 0.2 2.7 2 0 0 2 2 2 0 KaiC dNK PF01712.19 gi|126464962|ref|YP_001040071.1| - 0.2 11.5 0.8 19 5.0 0.2 2.5 2 0 0 2 2 2 0 Deoxynucleoside kinase DUF3584 PF12128.8 gi|126464962|ref|YP_001040071.1| - 0.21 9.1 0.1 0.53 7.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) TrwB_AAD_bind PF10412.9 gi|126464962|ref|YP_001040071.1| - 0.23 10.4 4.3 2.4 7.0 0.0 3.2 4 0 0 4 4 4 0 Type IV secretion-system coupling protein DNA-binding domain NTPase_1 PF03266.15 gi|126464962|ref|YP_001040071.1| - 0.25 11.3 9.9 1.6 8.7 0.6 3.0 3 0 0 3 3 3 0 NTPase AAA_17 PF13207.6 gi|126464962|ref|YP_001040071.1| - 0.29 11.6 2.1 7 7.1 0.1 2.7 2 0 0 2 2 2 0 AAA domain FeoB_N PF02421.18 gi|126464962|ref|YP_001040071.1| - 0.35 10.4 2.4 12 5.4 0.2 2.7 3 0 0 3 3 2 0 Ferrous iron transport protein B RuvB_N PF05496.12 gi|126464962|ref|YP_001040071.1| - 0.37 10.5 3.5 29 4.4 0.1 3.3 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain Viral_helicase1 PF01443.18 gi|126464962|ref|YP_001040071.1| - 0.56 9.9 2.4 18 5.0 0.1 2.9 4 0 0 4 4 2 0 Viral (Superfamily 1) RNA helicase CbiQ PF02361.16 gi|126464963|ref|YP_001040072.1| - 1.3e-14 54.3 8.9 2.3e-14 53.6 8.9 1.3 1 0 0 1 1 1 1 Cobalt transport protein Thi4 PF01946.17 gi|126464964|ref|YP_001040073.1| - 4.7e-58 196.2 1.9 5.4e-58 196.0 1.9 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|126464964|ref|YP_001040073.1| - 7.7e-10 38.9 4.8 1.1e-05 25.2 3.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|126464964|ref|YP_001040073.1| - 1.8e-09 37.2 1.8 5.6e-06 25.7 1.0 2.4 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|126464964|ref|YP_001040073.1| - 1.3e-08 34.7 0.5 1.9e-08 34.1 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|126464964|ref|YP_001040073.1| - 3.3e-08 33.6 0.9 8e-08 32.4 0.9 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|126464964|ref|YP_001040073.1| - 4.1e-08 32.8 0.1 4.7e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|126464964|ref|YP_001040073.1| - 4e-06 25.8 1.6 1.2e-05 24.3 1.5 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|126464964|ref|YP_001040073.1| - 5.1e-06 26.0 2.5 7e-06 25.5 2.5 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|126464964|ref|YP_001040073.1| - 0.00053 19.3 0.7 0.00088 18.6 0.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|126464964|ref|YP_001040073.1| - 0.001 18.2 1.1 0.0018 17.4 1.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|126464964|ref|YP_001040073.1| - 0.0048 16.2 0.2 0.0075 15.6 0.2 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|126464964|ref|YP_001040073.1| - 0.0097 15.0 0.4 0.016 14.3 0.2 1.4 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|126464964|ref|YP_001040073.1| - 0.016 15.8 1.0 0.055 14.0 1.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|126464964|ref|YP_001040073.1| - 0.13 12.4 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.14 gi|126464964|ref|YP_001040073.1| - 0.29 9.9 1.5 0.98 8.2 1.2 1.9 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|126464964|ref|YP_001040073.1| - 0.53 10.3 2.8 0.57 10.2 0.9 2.1 2 1 1 3 3 3 0 FAD-NAD(P)-binding ABC_cobalt PF09819.9 gi|126464965|ref|YP_001040074.1| - 2.3e-29 102.0 12.8 2.3e-29 102.0 12.8 2.0 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component DUF3147 PF11345.8 gi|126464965|ref|YP_001040074.1| - 0.00041 20.7 1.0 0.00041 20.7 1.0 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF3147) MtrB PF05440.12 gi|126464965|ref|YP_001040074.1| - 0.32 11.4 3.0 2.7 8.5 0.1 2.5 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B TENA_THI-4 PF03070.16 gi|126464966|ref|YP_001040075.1| - 1.2e-46 159.2 0.6 1.3e-46 159.0 0.6 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family VIT1 PF01988.19 gi|126464967|ref|YP_001040076.1| - 4.3e-48 164.0 3.5 4.3e-48 164.0 3.5 1.7 3 0 0 3 3 3 1 VIT family Rubrerythrin PF02915.17 gi|126464967|ref|YP_001040076.1| - 1.1e-12 48.6 2.6 1.9e-12 47.7 2.6 1.4 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|126464967|ref|YP_001040076.1| - 0.016 15.4 0.2 0.7 10.1 0.0 2.3 2 0 0 2 2 2 0 Ferritin-like domain SATase_N PF06426.14 gi|126464967|ref|YP_001040076.1| - 0.029 14.8 0.2 0.58 10.6 0.0 2.4 3 0 0 3 3 3 0 Serine acetyltransferase, N-terminal Ferritin-like PF12902.7 gi|126464967|ref|YP_001040076.1| - 0.091 12.6 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Ferritin-like Baculo_p47 PF05112.12 gi|126464967|ref|YP_001040076.1| - 0.17 11.4 0.0 13 5.3 0.0 2.1 2 0 0 2 2 2 0 Baculovirus P47 protein Lactamase_B PF00753.27 gi|126464968|ref|YP_001040077.1| - 1.4e-05 25.2 0.0 2.2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_red PF03358.15 gi|126464968|ref|YP_001040077.1| - 0.0015 18.3 0.0 0.0032 17.2 0.0 1.5 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Lactamase_B_2 PF12706.7 gi|126464968|ref|YP_001040077.1| - 0.0016 18.0 0.0 0.0028 17.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PGM_PMM_II PF02879.16 gi|126464968|ref|YP_001040077.1| - 0.0061 17.2 0.0 5.2 7.7 0.0 2.6 2 0 0 2 2 2 2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Peripla_BP_6 PF13458.6 gi|126464968|ref|YP_001040077.1| - 0.0083 15.8 0.0 0.17 11.5 0.0 2.1 1 1 1 2 2 2 1 Periplasmic binding protein Flavodoxin_1 PF00258.25 gi|126464968|ref|YP_001040077.1| - 0.012 15.9 0.0 0.035 14.3 0.0 1.8 2 1 0 2 2 2 0 Flavodoxin Spermine_synth PF01564.17 gi|126464968|ref|YP_001040077.1| - 0.015 14.8 0.4 0.063 12.7 0.1 2.1 2 0 0 2 2 2 0 Spermine/spermidine synthase domain Egg_lysin PF01303.17 gi|126464968|ref|YP_001040077.1| - 0.023 14.9 0.1 0.072 13.3 0.1 1.8 1 0 0 1 1 1 0 Egg lysin (Sperm-lysin) UPF0261 PF06792.11 gi|126464968|ref|YP_001040077.1| - 0.14 11.1 0.0 3.8 6.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0261) SapB_2 PF03489.17 gi|126464968|ref|YP_001040077.1| - 0.31 11.2 0.7 1.6 8.9 0.0 2.6 3 0 0 3 3 3 0 Saposin-like type B, region 2 Peptidase_M42 PF05343.14 gi|126464969|ref|YP_001040078.1| - 3.5e-110 367.6 1.5 4.1e-110 367.4 1.5 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|126464969|ref|YP_001040078.1| - 3.5e-10 39.9 0.1 6.2e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|126464969|ref|YP_001040078.1| - 1.8e-07 31.1 0.0 5.8e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|126464969|ref|YP_001040078.1| - 0.007 15.2 0.1 0.081 11.7 0.0 2.3 2 1 1 3 3 3 1 Aminopeptidase I zinc metalloprotease (M18) LdpA_C PF12617.8 gi|126464969|ref|YP_001040078.1| - 0.12 12.0 0.1 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 Iron-Sulfur binding protein C terminal AhpC-TSA PF00578.21 gi|126464970|ref|YP_001040079.1| - 3.8e-35 120.5 0.0 5.8e-35 119.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|126464970|ref|YP_001040079.1| - 9.6e-18 64.3 0.0 1.3e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|126464970|ref|YP_001040079.1| - 8.9e-13 47.9 0.1 1.8e-12 46.9 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|126464970|ref|YP_001040079.1| - 0.15 12.2 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme zinc_ribbon_9 PF14369.6 gi|126464971|ref|YP_001040080.1| - 0.00092 19.4 2.1 0.03 14.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon zinc_ribbon_2 PF13240.6 gi|126464971|ref|YP_001040080.1| - 0.0011 18.6 4.1 0.38 10.5 0.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|126464971|ref|YP_001040080.1| - 0.0012 18.2 4.6 0.18 11.3 0.7 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126464971|ref|YP_001040080.1| - 0.0014 18.5 0.5 1.7 8.7 0.1 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|126464971|ref|YP_001040080.1| - 0.0026 18.1 1.8 2 9.0 0.4 2.5 2 0 0 2 2 2 2 Zinc-finger double domain CpXC PF14353.6 gi|126464971|ref|YP_001040080.1| - 0.0034 17.4 0.8 0.086 12.9 0.8 2.1 1 1 0 1 1 1 1 CpXC protein zf-C2HC_2 PF13913.6 gi|126464971|ref|YP_001040080.1| - 0.0061 16.4 8.6 0.022 14.7 0.5 2.5 3 0 0 3 3 2 1 zinc-finger of a C2HC-type zf-Di19 PF05605.12 gi|126464971|ref|YP_001040080.1| - 0.01 16.1 0.9 0.85 10.0 0.3 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.6 gi|126464971|ref|YP_001040080.1| - 0.017 15.0 0.7 2.8 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|126464971|ref|YP_001040080.1| - 0.02 14.8 0.9 0.54 10.2 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|126464971|ref|YP_001040080.1| - 0.021 14.6 2.4 0.1 12.4 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif FYDLN_acid PF09538.10 gi|126464971|ref|YP_001040080.1| - 0.025 15.2 0.2 3.9 8.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) DZR PF12773.7 gi|126464971|ref|YP_001040080.1| - 0.026 14.5 0.6 0.41 10.7 0.6 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|126464971|ref|YP_001040080.1| - 0.038 14.2 2.3 2.8 8.2 0.2 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|126464971|ref|YP_001040080.1| - 0.041 13.4 3.9 2 8.0 0.5 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|126464971|ref|YP_001040080.1| - 0.049 13.8 1.6 1.4 9.1 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|126464971|ref|YP_001040080.1| - 0.065 13.7 3.2 6.7 7.4 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2225 PF09986.9 gi|126464971|ref|YP_001040080.1| - 0.078 12.7 1.2 1.9 8.2 1.2 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) UPF0547 PF10571.9 gi|126464971|ref|YP_001040080.1| - 0.088 12.9 6.5 0.52 10.5 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3268 PF11672.8 gi|126464971|ref|YP_001040080.1| - 0.13 12.6 0.6 1.1 9.6 0.6 2.0 1 1 0 1 1 1 0 zinc-finger-containing domain HypA PF01155.19 gi|126464971|ref|YP_001040080.1| - 0.14 12.2 0.2 0.21 11.6 0.2 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sgf11 PF08209.11 gi|126464971|ref|YP_001040080.1| - 0.18 11.4 2.1 2.1 8.0 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Mu-like_Com PF10122.9 gi|126464971|ref|YP_001040080.1| - 0.18 11.3 2.9 4 6.9 0.4 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com SoxD PF04267.12 gi|126464971|ref|YP_001040080.1| - 0.19 11.8 0.3 0.83 9.8 0.1 1.9 2 0 0 2 2 2 0 Sarcosine oxidase, delta subunit family zf-CHCC PF10276.9 gi|126464971|ref|YP_001040080.1| - 0.23 11.5 3.7 2.2 8.4 0.9 2.2 2 0 0 2 2 2 0 Zinc-finger domain zinc_ribbon_5 PF13719.6 gi|126464971|ref|YP_001040080.1| - 0.24 11.2 2.2 4 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|126464971|ref|YP_001040080.1| - 0.35 10.8 3.2 2.7 8.0 1.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG PhnA_Zn_Ribbon PF08274.12 gi|126464971|ref|YP_001040080.1| - 0.72 9.9 4.7 3.6 7.6 0.4 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.10 gi|126464971|ref|YP_001040080.1| - 0.75 9.6 3.7 13 5.6 0.4 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2_4 PF13894.6 gi|126464971|ref|YP_001040080.1| - 1 10.4 5.7 9.4 7.4 0.2 2.5 2 1 0 2 2 2 0 C2H2-type zinc finger MS_channel PF00924.18 gi|126464972|ref|YP_001040081.1| - 7.8e-51 172.6 1.2 7.8e-51 172.6 1.2 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|126464972|ref|YP_001040081.1| - 1.2e-05 25.2 0.7 1.2e-05 25.2 0.7 2.4 3 0 0 3 3 3 1 Conserved TM helix Colicin_V PF02674.16 gi|126464972|ref|YP_001040081.1| - 0.022 14.7 12.4 0.037 14.0 10.8 2.0 1 1 1 2 2 2 0 Colicin V production protein Asp23 PF03780.13 gi|126464972|ref|YP_001040081.1| - 0.026 15.0 0.2 0.06 13.8 0.2 1.7 1 0 0 1 1 1 0 Asp23 family, cell envelope-related function FtsX PF02687.21 gi|126464972|ref|YP_001040081.1| - 4 8.0 16.4 0.22 12.0 8.4 2.3 1 1 1 2 2 2 0 FtsX-like permease family HD PF01966.22 gi|126464973|ref|YP_001040082.1| - 8e-12 45.5 0.2 2.6e-11 43.8 0.2 1.9 1 0 0 1 1 1 1 HD domain CbtB PF09489.10 gi|126464975|ref|YP_001040084.1| - 3.1 8.0 5.2 30 4.8 2.2 3.0 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) ABC_tran PF00005.27 gi|126464977|ref|YP_001040086.1| - 7.5e-26 91.3 0.0 1.2e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126464977|ref|YP_001040086.1| - 1.3e-13 51.5 1.6 1e-09 38.7 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|126464977|ref|YP_001040086.1| - 6.3e-07 30.0 0.2 1.6e-06 28.8 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) MukB PF04310.12 gi|126464977|ref|YP_001040086.1| - 0.0024 17.7 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 MukB N-terminal Rad17 PF03215.15 gi|126464977|ref|YP_001040086.1| - 0.0035 17.3 0.0 0.0055 16.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|126464977|ref|YP_001040086.1| - 0.0044 16.8 0.0 1.5 8.5 0.0 2.5 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|126464977|ref|YP_001040086.1| - 0.0069 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|126464977|ref|YP_001040086.1| - 0.029 14.8 0.4 0.15 12.5 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|126464977|ref|YP_001040086.1| - 0.06 13.1 0.1 0.091 12.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|126464977|ref|YP_001040086.1| - 0.062 12.7 0.0 8.8 5.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|126464977|ref|YP_001040086.1| - 0.076 13.4 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|126464977|ref|YP_001040086.1| - 0.15 12.5 1.2 0.36 11.3 1.2 1.7 1 1 0 1 1 1 0 AAA domain tRNA-synt_1 PF00133.22 gi|126464978|ref|YP_001040087.1| - 1.4e-177 591.6 0.5 1.4e-177 591.6 0.5 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|126464978|ref|YP_001040087.1| - 4.3e-37 127.4 2.6 4.3e-37 127.4 2.6 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|126464978|ref|YP_001040087.1| - 9.6e-21 74.0 0.4 1.9e-07 30.2 0.0 4.3 3 2 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|126464978|ref|YP_001040087.1| - 0.00037 20.0 0.0 0.0012 18.3 0.0 1.9 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|126464978|ref|YP_001040087.1| - 0.018 14.4 0.0 1.7 8.0 0.0 2.6 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.10 gi|126464978|ref|YP_001040087.1| - 0.21 11.7 0.5 2 8.6 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|126464978|ref|YP_001040087.1| - 0.27 10.7 2.3 1.3 8.6 0.4 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com MazE_antitoxin PF04014.18 gi|126464979|ref|YP_001040088.1| - 2.8e-09 36.7 0.7 2.8e-09 36.7 0.7 1.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|126464979|ref|YP_001040088.1| - 0.029 14.4 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system PIN PF01850.21 gi|126464980|ref|YP_001040089.1| - 2.2e-11 44.3 1.7 2.8e-11 44.0 1.7 1.1 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|126464980|ref|YP_001040089.1| - 0.01 16.2 1.4 0.02 15.2 0.2 1.9 2 1 0 2 2 2 0 PIN like domain DUF5615 PF18480.1 gi|126464980|ref|YP_001040089.1| - 0.016 14.9 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) dCMP_cyt_deam_1 PF00383.23 gi|126464981|ref|YP_001040090.1| - 8.3e-16 57.7 0.2 1.1e-15 57.3 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|126464981|ref|YP_001040090.1| - 9.5e-10 38.8 0.2 1.4e-09 38.3 0.2 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|126464981|ref|YP_001040090.1| - 0.00017 21.3 1.6 0.043 13.4 0.2 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Nucleos_tra2_C PF07662.13 gi|126464982|ref|YP_001040091.1| - 2.3 8.0 10.9 7 6.4 10.9 1.8 1 1 0 1 1 1 0 Na+ dependent nucleoside transporter C-terminus NMT1_2 PF13379.6 gi|126464983|ref|YP_001040092.1| - 3e-19 69.7 0.0 2.9e-18 66.5 0.0 1.9 1 1 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|126464983|ref|YP_001040092.1| - 1.9e-18 67.2 0.0 2.7e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|126464983|ref|YP_001040092.1| - 0.0007 19.3 0.0 0.0015 18.2 0.0 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.22 gi|126464984|ref|YP_001040093.1| - 1.9e-20 73.3 20.2 1.9e-20 73.3 20.2 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Na_K-ATPase PF00287.18 gi|126464984|ref|YP_001040093.1| - 1.6 7.8 4.5 2.4 7.3 4.5 1.2 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain CNDH2_C PF16858.5 gi|126464985|ref|YP_001040094.1| - 0.12 12.2 0.2 0.14 12.0 0.2 1.1 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term Metallophos PF00149.28 gi|126464986|ref|YP_001040095.1| - 1.1e-09 39.1 0.0 2e-09 38.3 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126464986|ref|YP_001040095.1| - 9.5e-06 25.9 0.0 2.8e-05 24.4 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF87 PF01935.17 gi|126464988|ref|YP_001040097.1| - 1.7e-14 54.4 4.5 2.1e-13 50.9 0.1 2.6 3 0 0 3 3 3 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|126464988|ref|YP_001040097.1| - 5.6e-05 22.6 0.0 0.0014 18.1 0.0 2.6 3 0 0 3 3 3 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|126464988|ref|YP_001040097.1| - 0.0015 17.5 0.0 0.011 14.7 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|126464988|ref|YP_001040097.1| - 0.0042 17.1 0.0 0.0082 16.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|126464988|ref|YP_001040097.1| - 0.0066 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Zeta_toxin PF06414.12 gi|126464988|ref|YP_001040097.1| - 0.026 13.8 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|126464988|ref|YP_001040097.1| - 0.035 13.2 0.0 0.064 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.29 gi|126464988|ref|YP_001040097.1| - 0.067 13.0 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_23 PF13476.6 gi|126464989|ref|YP_001040098.1| - 6.2e-20 72.6 11.8 6.2e-20 72.6 11.8 6.5 2 1 2 4 4 2 1 AAA domain AAA_21 PF13304.6 gi|126464989|ref|YP_001040098.1| - 9.1e-10 38.8 21.8 1.7e-08 34.6 0.5 4.2 2 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126464989|ref|YP_001040098.1| - 4e-07 29.7 21.0 2.7e-05 23.7 0.0 3.0 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain HrpB7 PF09486.10 gi|126464989|ref|YP_001040098.1| - 1.5e-05 25.5 5.5 1.5e-05 25.5 5.5 4.2 2 2 1 4 4 4 1 Bacterial type III secretion protein (HrpB7) AAA_29 PF13555.6 gi|126464989|ref|YP_001040098.1| - 1.6e-05 24.6 0.0 3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|126464989|ref|YP_001040098.1| - 5.3e-05 22.2 86.5 0.041 12.8 18.8 4.1 2 1 2 4 4 4 3 Spc7 kinetochore protein DUF4200 PF13863.6 gi|126464989|ref|YP_001040098.1| - 0.00023 21.5 100.7 0.0022 18.4 20.6 5.0 2 2 2 4 4 4 2 Domain of unknown function (DUF4200) APG6_N PF17675.1 gi|126464989|ref|YP_001040098.1| - 0.00038 21.0 91.8 0.00055 20.5 13.6 4.6 2 2 2 4 4 4 2 Apg6 coiled-coil region AAA_27 PF13514.6 gi|126464989|ref|YP_001040098.1| - 0.00065 19.4 0.0 0.00065 19.4 0.0 4.4 5 0 0 5 5 5 1 AAA domain Rad50_zn_hook PF04423.14 gi|126464989|ref|YP_001040098.1| - 0.00075 19.3 4.2 0.00075 19.3 4.2 9.1 9 4 2 12 12 10 1 Rad50 zinc hook motif AAA_15 PF13175.6 gi|126464989|ref|YP_001040098.1| - 0.0024 17.7 92.2 0.24 11.1 44.4 4.0 2 1 1 3 3 3 2 AAA ATPase domain TPR_MLP1_2 PF07926.12 gi|126464989|ref|YP_001040098.1| - 0.0028 17.7 79.1 0.0079 16.3 12.3 5.2 2 1 2 5 5 5 2 TPR/MLP1/MLP2-like protein TMF_TATA_bd PF12325.8 gi|126464989|ref|YP_001040098.1| - 0.0046 17.2 13.2 0.0046 17.2 13.2 6.7 2 2 4 6 6 5 1 TATA element modulatory factor 1 TATA binding AAA_25 PF13481.6 gi|126464989|ref|YP_001040098.1| - 0.0077 15.8 0.0 0.021 14.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126464989|ref|YP_001040098.1| - 0.012 16.0 0.5 0.11 12.8 0.0 2.8 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|126464989|ref|YP_001040098.1| - 0.026 14.8 8.1 0.063 13.6 0.0 3.9 4 1 0 4 4 4 0 AAA domain FliJ PF02050.16 gi|126464989|ref|YP_001040098.1| - 0.16 12.2 66.8 0.12 12.6 4.2 5.6 3 2 2 5 5 5 0 Flagellar FliJ protein Lebercilin PF15619.6 gi|126464989|ref|YP_001040098.1| - 0.18 11.5 90.8 2.2 7.9 36.9 3.8 2 2 1 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease HsbA PF12296.8 gi|126464989|ref|YP_001040098.1| - 0.19 12.2 3.4 0.85 10.1 0.2 3.6 2 1 2 4 4 3 0 Hydrophobic surface binding protein A DUF4407 PF14362.6 gi|126464989|ref|YP_001040098.1| - 0.23 10.7 47.7 0.038 13.3 15.6 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) AAA_13 PF13166.6 gi|126464989|ref|YP_001040098.1| - 0.24 10.0 79.8 0.78 8.3 20.0 4.5 3 1 2 5 5 5 0 AAA domain Fez1 PF06818.15 gi|126464989|ref|YP_001040098.1| - 0.27 11.7 70.3 0.86 10.0 25.9 4.3 1 1 2 3 3 3 0 Fez1 APG17 PF04108.12 gi|126464989|ref|YP_001040098.1| - 0.77 8.8 63.4 0.013 14.6 8.7 4.4 3 2 1 5 5 4 0 Autophagy protein Apg17 ABC_tran PF00005.27 gi|126464989|ref|YP_001040098.1| - 0.81 10.2 0.0 0.81 10.2 0.0 5.9 2 1 0 2 2 1 0 ABC transporter BRE1 PF08647.11 gi|126464989|ref|YP_001040098.1| - 1.9 8.6 90.9 0.022 14.8 18.1 5.1 3 2 1 4 4 3 0 BRE1 E3 ubiquitin ligase Laminin_II PF06009.12 gi|126464989|ref|YP_001040098.1| - 2.3 8.2 62.4 0.54 10.3 14.6 4.6 1 1 3 5 5 5 0 Laminin Domain II DUF745 PF05335.13 gi|126464989|ref|YP_001040098.1| - 4.2 7.0 43.6 0.31 10.8 4.8 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF745) DUF1664 PF07889.12 gi|126464989|ref|YP_001040098.1| - 5.1 7.2 58.4 0.11 12.5 7.8 5.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) CALCOCO1 PF07888.11 gi|126464989|ref|YP_001040098.1| - 5.6 5.7 67.1 6.9 5.4 44.3 2.3 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like HisKA_3 PF07730.13 gi|126464989|ref|YP_001040098.1| - 6.2 7.4 9.5 25 5.5 0.0 4.7 3 1 2 5 5 4 0 Histidine kinase MscS_porin PF12795.7 gi|126464989|ref|YP_001040098.1| - 6.4 6.2 68.9 0.26 10.8 10.2 4.2 2 2 1 4 4 4 0 Mechanosensitive ion channel porin domain Tropomyosin PF00261.20 gi|126464989|ref|YP_001040098.1| - 9.6 5.5 79.2 0.031 13.6 12.7 4.6 3 1 2 5 5 5 0 Tropomyosin HSDR_N PF04313.14 gi|126464990|ref|YP_001040099.1| - 0.0075 16.2 0.4 3 7.7 0.0 2.5 1 1 1 2 2 2 2 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|126464990|ref|YP_001040099.1| - 0.028 14.4 0.0 0.062 13.3 0.0 1.6 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) DUF763 PF05559.11 gi|126464991|ref|YP_001040100.1| - 1.1e-126 422.2 0.0 1.4e-126 421.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|126464991|ref|YP_001040100.1| - 0.015 15.2 0.0 0.046 13.6 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif HAD_2 PF13419.6 gi|126464992|ref|YP_001040101.1| - 2.7e-14 53.7 0.1 4.6e-14 52.9 0.1 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126464992|ref|YP_001040101.1| - 6.1e-08 32.6 0.0 2.3e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|126464992|ref|YP_001040101.1| - 6.4e-07 29.9 0.0 2.1e-06 28.2 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase TAF PF02969.17 gi|126464992|ref|YP_001040101.1| - 0.039 14.1 0.1 6.2 7.1 0.0 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) Na_H_Exchanger PF00999.21 gi|126464993|ref|YP_001040102.1| - 1.5e-51 175.4 54.4 1.9e-51 175.0 54.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Hydrolase_like PF13242.6 gi|126464993|ref|YP_001040102.1| - 0.055 13.5 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like Nmad3 PF18754.1 gi|126464994|ref|YP_001040103.1| - 0.0014 18.3 0.0 0.0015 18.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 OrfB_Zn_ribbon PF07282.11 gi|126464995|ref|YP_001040104.1| - 1.3e-06 28.2 0.0 4.8e-06 26.4 0.0 2.1 1 1 0 1 1 1 1 Putative transposase DNA-binding domain RuvC_1 PF18516.1 gi|126464995|ref|YP_001040104.1| - 0.0026 17.0 3.4 0.0057 15.9 3.4 1.5 1 0 0 1 1 1 1 RuvC nuclease domain Aldedh PF00171.22 gi|126464996|ref|YP_001040105.1| - 7.6e-121 403.8 0.0 8.7e-121 403.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|126464996|ref|YP_001040105.1| - 8e-05 21.8 0.0 0.11 11.6 0.0 2.2 2 0 0 2 2 2 2 Acyl-CoA reductase (LuxC) Glycos_transf_1 PF00534.20 gi|126464997|ref|YP_001040106.1| - 6.1e-23 81.2 0.0 1.2e-22 80.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|126464997|ref|YP_001040106.1| - 8.8e-11 42.1 0.0 1.7e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126464997|ref|YP_001040106.1| - 6e-10 39.7 0.0 9.8e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 TrmB PF01978.19 gi|126464998|ref|YP_001040107.1| - 1e-22 79.8 0.1 2.3e-22 78.7 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|126464998|ref|YP_001040107.1| - 0.0011 19.3 0.0 0.0026 18.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|126464998|ref|YP_001040107.1| - 0.008 16.0 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|126464998|ref|YP_001040107.1| - 0.029 14.1 0.0 0.065 13.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.7 gi|126464998|ref|YP_001040107.1| - 0.034 14.0 0.0 0.082 12.8 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|126464998|ref|YP_001040107.1| - 0.046 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|126464998|ref|YP_001040107.1| - 0.079 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Regulator_TrmB PF11495.8 gi|126464999|ref|YP_001040108.1| - 1.6e-23 83.2 0.2 1.9e-23 82.9 0.2 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB ABC_tran PF00005.27 gi|126465000|ref|YP_001040109.1| - 4.3e-35 121.2 0.0 6.4e-35 120.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465000|ref|YP_001040109.1| - 4.5e-11 43.1 0.0 0.00026 20.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 gi|126465000|ref|YP_001040109.1| - 0.00011 21.2 0.6 0.25 10.1 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class TOBE_2 PF08402.10 gi|126465000|ref|YP_001040109.1| - 0.00031 20.8 0.1 0.0088 16.2 0.0 2.5 2 0 0 2 2 2 1 TOBE domain AAA_23 PF13476.6 gi|126465000|ref|YP_001040109.1| - 0.0004 21.0 0.1 0.00067 20.2 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126465000|ref|YP_001040109.1| - 0.00045 19.9 0.0 0.0012 18.5 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126465000|ref|YP_001040109.1| - 0.0017 17.8 0.2 1.5 8.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|126465000|ref|YP_001040109.1| - 0.0036 17.5 0.1 0.033 14.4 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|126465000|ref|YP_001040109.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|126465000|ref|YP_001040109.1| - 0.012 15.5 0.1 0.023 14.6 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|126465000|ref|YP_001040109.1| - 0.015 15.7 0.1 0.54 10.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126465000|ref|YP_001040109.1| - 0.016 15.5 0.4 0.06 13.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|126465000|ref|YP_001040109.1| - 0.017 15.5 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126465000|ref|YP_001040109.1| - 0.022 14.7 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|126465000|ref|YP_001040109.1| - 0.027 14.2 0.3 0.08 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|126465000|ref|YP_001040109.1| - 0.027 14.7 0.1 0.059 13.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|126465000|ref|YP_001040109.1| - 0.031 14.2 0.1 0.09 12.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain DLIC PF05783.11 gi|126465000|ref|YP_001040109.1| - 0.047 12.5 0.0 0.07 12.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) T2SSE PF00437.20 gi|126465000|ref|YP_001040109.1| - 0.053 12.6 0.0 0.095 11.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|126465000|ref|YP_001040109.1| - 0.073 13.6 0.0 0.18 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.20 gi|126465000|ref|YP_001040109.1| - 0.09 11.4 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Rad17 PF03215.15 gi|126465000|ref|YP_001040109.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain LupA PF18242.1 gi|126465000|ref|YP_001040109.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Legionella ubiquitin-specific protease A domain AAA_24 PF13479.6 gi|126465000|ref|YP_001040109.1| - 0.17 11.6 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|126465000|ref|YP_001040109.1| - 0.18 10.4 0.0 0.93 8.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|126465001|ref|YP_001040110.1| - 2.9e-20 72.8 16.2 2.9e-20 72.8 16.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|126465002|ref|YP_001040111.1| - 3.5e-19 69.3 22.4 3.5e-19 69.3 22.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CPP1-like PF11833.8 gi|126465002|ref|YP_001040111.1| - 0.018 14.7 3.7 0.051 13.2 3.7 1.9 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like SBP_bac_1 PF01547.25 gi|126465003|ref|YP_001040112.1| - 2.5e-37 129.5 8.1 4.1e-37 128.8 8.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|126465003|ref|YP_001040112.1| - 8.4e-27 94.7 0.4 1.2e-26 94.2 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2613 PF11021.8 gi|126465003|ref|YP_001040112.1| - 0.13 12.4 0.2 0.24 11.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DapB_N PF01113.20 gi|126465004|ref|YP_001040113.1| - 1.8e-09 37.8 0.3 3.5e-09 36.8 0.3 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|126465004|ref|YP_001040113.1| - 6.6e-05 23.2 1.5 0.00023 21.5 1.5 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|126465004|ref|YP_001040113.1| - 0.0037 17.8 0.8 0.024 15.2 0.7 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|126465004|ref|YP_001040113.1| - 0.011 16.4 0.1 0.025 15.3 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|126465004|ref|YP_001040113.1| - 0.021 14.2 0.3 0.049 13.0 0.3 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|126465004|ref|YP_001040113.1| - 0.05 14.4 0.0 0.1 13.4 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|126465004|ref|YP_001040113.1| - 0.079 13.2 0.4 0.21 11.9 0.4 1.8 1 1 0 1 1 1 0 TrkA-N domain Thioredoxin PF00085.20 gi|126465005|ref|YP_001040114.1| - 1.8e-15 56.8 0.0 4.2e-15 55.6 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|126465005|ref|YP_001040114.1| - 5.7e-10 39.6 0.5 2.2e-09 37.7 0.5 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|126465005|ref|YP_001040114.1| - 0.00018 21.7 2.4 0.0014 18.8 0.9 2.1 1 1 1 2 2 2 1 Thioredoxin AhpC-TSA PF00578.21 gi|126465005|ref|YP_001040114.1| - 0.0003 20.7 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|126465005|ref|YP_001040114.1| - 0.00053 19.7 0.3 0.001 18.8 0.2 1.4 1 1 0 1 1 1 1 Redoxin DSBA PF01323.20 gi|126465005|ref|YP_001040114.1| - 0.00072 19.4 0.6 0.097 12.4 0.4 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 gi|126465005|ref|YP_001040114.1| - 0.001 19.0 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|126465005|ref|YP_001040114.1| - 0.0047 16.8 0.0 0.0094 15.8 0.0 1.6 2 1 0 2 2 2 1 F plasmid transfer operon protein DIM1 PF02966.16 gi|126465005|ref|YP_001040114.1| - 0.016 14.9 0.0 0.031 14.1 0.0 1.4 1 1 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_8 PF13905.6 gi|126465005|ref|YP_001040114.1| - 0.036 14.4 0.1 0.064 13.6 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin-like OST3_OST6 PF04756.13 gi|126465005|ref|YP_001040114.1| - 0.065 12.6 0.0 0.076 12.4 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DHC_N1 PF08385.12 gi|126465005|ref|YP_001040114.1| - 0.26 9.9 0.1 0.3 9.7 0.1 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 PALP PF00291.25 gi|126465006|ref|YP_001040115.1| - 6.7e-78 262.1 0.0 7.8e-78 261.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADK_lid PF05191.14 gi|126465006|ref|YP_001040115.1| - 0.19 11.8 0.3 0.35 10.9 0.3 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid Nmad3 PF18754.1 gi|126465007|ref|YP_001040116.1| - 0.016 14.8 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Nucleotide modification associated domain 3 DEAD PF00270.29 gi|126465008|ref|YP_001040117.1| - 1.1e-17 64.3 0.7 9.1e-17 61.4 0.0 2.8 4 0 0 4 4 4 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126465008|ref|YP_001040117.1| - 7.8e-16 58.4 0.4 3.2e-15 56.4 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126465008|ref|YP_001040117.1| - 3.4e-08 33.7 0.0 1.4e-07 31.7 0.0 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|126465008|ref|YP_001040117.1| - 0.0019 17.8 3.2 0.0072 15.9 0.0 2.5 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|126465008|ref|YP_001040117.1| - 0.0093 16.3 0.0 0.032 14.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain FERM_N PF09379.10 gi|126465008|ref|YP_001040117.1| - 0.096 12.6 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 FERM N-terminal domain Glyco_hydro_130 PF04041.13 gi|126465009|ref|YP_001040118.1| - 1.8e-69 234.2 4.9 2.1e-69 233.9 4.9 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase PALP PF00291.25 gi|126465010|ref|YP_001040119.1| - 3e-43 148.3 0.0 4.1e-43 147.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Caveolin PF01146.17 gi|126465011|ref|YP_001040120.1| - 0.048 13.6 0.1 0.048 13.6 0.1 2.2 2 0 0 2 2 2 0 Caveolin Aminotran_1_2 PF00155.21 gi|126465012|ref|YP_001040121.1| - 4.8e-74 249.7 0.0 5.5e-74 249.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|126465012|ref|YP_001040121.1| - 1.1e-06 28.3 0.0 1.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|126465012|ref|YP_001040121.1| - 0.0018 17.3 0.0 0.0029 16.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|126465012|ref|YP_001040121.1| - 0.0055 15.3 0.0 0.0078 14.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|126465012|ref|YP_001040121.1| - 0.029 13.6 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase LMBR1 PF04791.16 gi|126465013|ref|YP_001040122.1| - 0.13 11.2 1.2 0.14 11.1 1.2 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein GATase_4 PF13230.6 gi|126465014|ref|YP_001040123.1| - 2.2e-09 36.6 0.0 3.1e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|126465014|ref|YP_001040123.1| - 5.5e-08 33.1 0.0 1.1e-07 32.1 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain RHH_1 PF01402.21 gi|126465015|ref|YP_001040124.1| - 0.0012 18.7 0.0 0.0056 16.6 0.0 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF1548 PF07579.11 gi|126465015|ref|YP_001040124.1| - 0.012 15.9 0.1 0.025 14.9 0.1 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1548) CagD PF16567.5 gi|126465015|ref|YP_001040124.1| - 0.015 15.1 5.5 2.3 8.0 0.0 2.1 1 1 0 2 2 2 0 Pathogenicity island component CagD LRR_4 PF12799.7 gi|126465015|ref|YP_001040124.1| - 0.027 14.9 0.2 0.062 13.7 0.2 1.8 1 1 0 1 1 1 0 Leucine Rich repeats (2 copies) DUF1028 PF06267.12 gi|126465016|ref|YP_001040125.1| - 1.2e-53 181.8 0.0 1.4e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) Nitroreductase PF00881.24 gi|126465017|ref|YP_001040126.1| - 1.1e-30 106.9 0.3 6.1e-20 71.9 0.1 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126465017|ref|YP_001040126.1| - 2.7e-15 56.5 0.0 4.6e-05 23.1 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase F-box-like PF12937.7 gi|126465017|ref|YP_001040126.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 F-box-like DUF3928 PF13065.6 gi|126465018|ref|YP_001040127.1| - 0.058 14.2 0.3 0.069 13.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) E3_UbLigase_RBR PF18091.1 gi|126465018|ref|YP_001040127.1| - 0.19 11.9 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 E3 Ubiquitin Ligase RBR C-terminal domain tRNA-synt_1f PF01921.18 gi|126465019|ref|YP_001040128.1| - 6.4e-93 311.5 0.5 9.7e-93 310.9 0.5 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|126465019|ref|YP_001040128.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Nudix_N_2 PF14803.6 gi|126465019|ref|YP_001040128.1| - 2.4 8.2 5.5 16 5.5 5.5 2.1 1 1 0 1 1 1 0 Nudix N-terminal SBP_bac_1 PF01547.25 gi|126465020|ref|YP_001040129.1| - 2.1e-29 103.5 10.9 1.4e-28 100.8 10.9 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2749 PF10907.8 gi|126465020|ref|YP_001040129.1| - 1.1 9.5 5.2 2.2 8.5 5.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) BPD_transp_1 PF00528.22 gi|126465021|ref|YP_001040130.1| - 5.2e-14 52.4 16.1 5.2e-14 52.4 16.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PMP22_Claudin PF00822.20 gi|126465021|ref|YP_001040130.1| - 0.015 15.2 1.6 0.015 15.2 1.6 3.2 3 1 1 4 4 4 0 PMP-22/EMP/MP20/Claudin family BPD_transp_1 PF00528.22 gi|126465022|ref|YP_001040131.1| - 6.1e-08 32.6 20.9 6.1e-08 32.6 20.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126465023|ref|YP_001040132.1| - 8.8e-35 120.2 0.0 1.5e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|126465023|ref|YP_001040132.1| - 8.9e-09 36.1 0.0 2.4e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|126465023|ref|YP_001040132.1| - 1.4e-06 28.3 1.2 0.01 15.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126465023|ref|YP_001040132.1| - 0.0031 17.2 0.2 0.0087 15.8 0.2 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|126465023|ref|YP_001040132.1| - 0.0083 15.6 0.2 2.7 7.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.10 gi|126465023|ref|YP_001040132.1| - 0.039 14.1 0.0 0.099 12.8 0.0 1.7 1 0 0 1 1 1 0 TOBE domain RsgA_GTPase PF03193.16 gi|126465023|ref|YP_001040132.1| - 0.088 12.7 0.4 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase G-alpha PF00503.20 gi|126465023|ref|YP_001040132.1| - 0.091 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_22 PF13401.6 gi|126465023|ref|YP_001040132.1| - 0.12 12.6 0.7 0.32 11.3 0.2 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126465023|ref|YP_001040132.1| - 0.12 12.0 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|126465023|ref|YP_001040132.1| - 0.16 11.6 0.0 0.58 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Glycos_transf_2 PF00535.26 gi|126465024|ref|YP_001040133.1| - 4.8e-31 107.9 0.1 6.1e-31 107.5 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126465024|ref|YP_001040133.1| - 9.5e-11 42.0 0.0 1.2e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7N PF13733.6 gi|126465024|ref|YP_001040133.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 N-terminal region of glycosyl transferase group 7 Glyco_tranf_2_4 PF13704.6 gi|126465024|ref|YP_001040133.1| - 0.018 15.5 0.0 0.041 14.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 ABC2_membrane_2 PF12679.7 gi|126465025|ref|YP_001040134.1| - 2.1e-14 53.5 17.0 3e-14 53.0 14.4 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.6 gi|126465025|ref|YP_001040134.1| - 0.0011 19.2 0.0 0.0021 18.3 0.0 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain PIG-F PF06699.11 gi|126465025|ref|YP_001040134.1| - 0.13 12.4 9.0 0.3 11.2 9.0 1.6 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F ABC_tran PF00005.27 gi|126465026|ref|YP_001040135.1| - 7.4e-24 84.8 0.0 3.4e-23 82.7 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|126465026|ref|YP_001040135.1| - 3.4e-10 40.2 0.0 3.3e-06 27.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|126465026|ref|YP_001040135.1| - 0.00017 22.2 0.6 0.00042 21.0 0.6 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|126465026|ref|YP_001040135.1| - 0.034 13.6 0.3 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF2691 PF10903.8 gi|126465026|ref|YP_001040135.1| - 0.036 13.9 0.1 0.063 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2691) ORF6C PF10552.9 gi|126465026|ref|YP_001040135.1| - 0.043 13.9 0.2 11 6.1 0.0 2.5 2 0 0 2 2 2 0 ORF6C domain AAA_23 PF13476.6 gi|126465026|ref|YP_001040135.1| - 0.068 13.7 0.3 0.068 13.7 0.3 2.1 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|126465026|ref|YP_001040135.1| - 0.12 12.0 0.8 0.67 9.5 0.1 2.3 2 1 2 4 4 4 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|126465026|ref|YP_001040135.1| - 0.16 11.7 0.0 0.5 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|126465027|ref|YP_001040136.1| - 3.2e-35 121.8 0.0 4.6e-35 121.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|126465028|ref|YP_001040137.1| - 3.6e-68 229.5 0.2 4.5e-68 229.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|126465029|ref|YP_001040138.1| - 1.4e-18 67.7 0.0 1.9e-18 67.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|126465029|ref|YP_001040138.1| - 2.1e-09 37.1 0.1 1.9e-08 34.0 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126465029|ref|YP_001040138.1| - 9.9e-09 35.4 0.3 0.004 17.0 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126465029|ref|YP_001040138.1| - 0.00028 21.4 0.0 0.00064 20.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|126465029|ref|YP_001040138.1| - 0.00042 20.2 0.0 0.0018 18.1 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126465029|ref|YP_001040138.1| - 0.0061 16.5 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_13 PF13166.6 gi|126465029|ref|YP_001040138.1| - 0.014 14.1 0.4 0.53 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|126465029|ref|YP_001040138.1| - 0.018 14.8 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|126465029|ref|YP_001040138.1| - 0.019 14.6 0.0 0.054 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|126465029|ref|YP_001040138.1| - 0.027 14.9 0.2 0.06 13.8 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|126465029|ref|YP_001040138.1| - 0.043 13.5 0.2 0.068 12.9 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126465029|ref|YP_001040138.1| - 0.061 13.7 0.0 0.067 13.6 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|126465029|ref|YP_001040138.1| - 0.069 12.2 0.0 0.093 11.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.16 gi|126465029|ref|YP_001040138.1| - 0.087 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|126465029|ref|YP_001040138.1| - 0.096 12.8 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|126465029|ref|YP_001040138.1| - 0.098 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126465029|ref|YP_001040138.1| - 0.1 12.8 0.1 0.27 11.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|126465029|ref|YP_001040138.1| - 0.13 12.2 0.3 0.32 10.9 0.1 1.7 2 0 0 2 2 2 0 NACHT domain tRNA-synt_1 PF00133.22 gi|126465030|ref|YP_001040139.1| - 1.9e-64 218.0 0.1 8.6e-64 215.8 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|126465030|ref|YP_001040139.1| - 5.5e-24 84.6 1.2 2.9e-12 46.1 0.0 4.1 3 1 1 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|126465030|ref|YP_001040139.1| - 1.4e-22 80.3 7.6 6.2e-22 78.2 7.6 2.1 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|126465030|ref|YP_001040139.1| - 2.7e-11 43.4 0.2 7.5e-06 25.5 0.1 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|126465030|ref|YP_001040139.1| - 1.7e-05 23.9 1.9 4.4e-05 22.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|126465030|ref|YP_001040139.1| - 0.0014 18.2 0.0 0.067 12.7 0.0 2.5 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1b PF00579.25 gi|126465030|ref|YP_001040139.1| - 0.0034 16.8 0.0 0.0071 15.7 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) CcmH PF03918.14 gi|126465030|ref|YP_001040139.1| - 0.075 12.3 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 Cytochrome C biogenesis protein tRNA-synt_1d PF00750.19 gi|126465030|ref|YP_001040139.1| - 0.078 11.9 0.0 0.33 9.8 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (R) CMD PF02627.20 gi|126465031|ref|YP_001040140.1| - 3.1e-22 78.4 0.2 3.6e-22 78.2 0.2 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family SinI PF08671.10 gi|126465031|ref|YP_001040140.1| - 0.00041 20.1 3.6 0.0027 17.5 0.2 2.7 3 0 0 3 3 3 1 Anti-repressor SinI PA26 PF04636.13 gi|126465031|ref|YP_001040140.1| - 0.057 12.3 0.0 0.061 12.2 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) PGM_PMM_II PF02879.16 gi|126465032|ref|YP_001040141.1| - 2.3e-19 69.9 0.0 1.3e-18 67.5 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_I PF02878.16 gi|126465032|ref|YP_001040141.1| - 3.7e-11 42.9 0.0 7e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|126465032|ref|YP_001040141.1| - 0.0089 16.2 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NTP_transferase PF00483.23 gi|126465033|ref|YP_001040142.1| - 1.9e-40 139.0 0.0 2.5e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|126465033|ref|YP_001040142.1| - 1.2e-10 42.0 0.0 1.6e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|126465033|ref|YP_001040142.1| - 0.00011 21.8 6.9 0.001 18.7 0.4 4.1 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|126465033|ref|YP_001040142.1| - 0.0039 16.9 0.2 0.0097 15.6 0.2 1.7 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|126465033|ref|YP_001040142.1| - 0.028 13.4 0.7 4.9 6.0 0.0 2.1 2 0 0 2 2 2 0 L-fucokinase IspD PF01128.19 gi|126465033|ref|YP_001040142.1| - 0.2 11.4 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4064 PF13273.6 gi|126465034|ref|YP_001040143.1| - 4.7e-14 52.5 19.0 4.7e-14 52.5 19.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF4064) UPF0047 PF01894.17 gi|126465035|ref|YP_001040144.1| - 3.8e-11 43.2 0.2 4.7e-11 42.8 0.2 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 ACP PF06857.11 gi|126465035|ref|YP_001040144.1| - 0.026 14.7 0.0 0.069 13.4 0.0 1.7 2 0 0 2 2 2 0 Malonate decarboxylase delta subunit (MdcD) DUF3372 PF11852.8 gi|126465035|ref|YP_001040144.1| - 0.056 12.9 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) MORN_2 PF07661.13 gi|126465035|ref|YP_001040144.1| - 0.074 13.3 0.3 0.19 12.1 0.3 1.7 1 0 0 1 1 1 0 MORN repeat variant UPF0047 PF01894.17 gi|126465036|ref|YP_001040145.1| - 2.7e-11 43.6 0.0 2.8e-09 37.2 0.0 2.1 1 1 0 1 1 1 1 Uncharacterised protein family UPF0047 G0-G1_switch_2 PF15103.6 gi|126465037|ref|YP_001040146.1| - 0.082 13.3 0.2 7.6 7.0 0.1 2.1 2 0 0 2 2 2 0 G0/G1 switch protein 2 DUF2207 PF09972.9 gi|126465037|ref|YP_001040146.1| - 1.4 7.5 4.7 1.9 7.1 4.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Amidohydro_1 PF01979.20 gi|126465038|ref|YP_001040147.1| - 2.4e-24 86.3 0.0 3.8e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126465038|ref|YP_001040147.1| - 1.5e-11 44.4 0.0 2.8e-06 27.1 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family TatD_DNase PF01026.21 gi|126465038|ref|YP_001040147.1| - 0.001 18.5 0.1 0.0028 17.1 0.1 1.7 1 1 0 1 1 1 1 TatD related DNase MarC PF01914.17 gi|126465039|ref|YP_001040148.1| - 5.3e-44 150.0 21.1 6.2e-44 149.8 21.1 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein SfLAP PF11139.8 gi|126465039|ref|YP_001040148.1| - 1.4 8.3 15.5 1.9 7.9 8.7 2.2 2 0 0 2 2 2 0 Sap, sulfolipid-1-addressing protein Cation_efflux PF01545.21 gi|126465040|ref|YP_001040149.1| - 1e-12 48.2 28.7 1.3e-12 47.8 28.7 1.2 1 0 0 1 1 1 1 Cation efflux family DUF1122 PF06557.11 gi|126465042|ref|YP_001040151.1| - 3.4e-70 235.0 0.0 4.2e-70 234.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Bmp PF02608.14 gi|126465043|ref|YP_001040152.1| - 2.8e-34 118.5 1.9 3.7e-34 118.1 1.9 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like RAI16-like PF10257.9 gi|126465043|ref|YP_001040152.1| - 0.069 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein ABC_tran PF00005.27 gi|126465044|ref|YP_001040153.1| - 6.9e-45 152.9 0.0 1.4e-29 103.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|126465044|ref|YP_001040153.1| - 0.00019 21.3 0.1 0.02 14.7 0.1 2.3 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126465044|ref|YP_001040153.1| - 0.0014 18.3 0.2 0.015 15.1 0.0 2.6 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126465044|ref|YP_001040153.1| - 0.015 15.0 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126465044|ref|YP_001040153.1| - 0.056 13.4 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 gi|126465044|ref|YP_001040153.1| - 0.1 12.3 0.4 1.3 8.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|126465044|ref|YP_001040153.1| - 0.2 12.1 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|126465045|ref|YP_001040154.1| - 3.5e-27 95.3 36.1 3.5e-27 95.3 36.1 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|126465046|ref|YP_001040155.1| - 4.8e-28 98.1 38.0 6.1e-28 97.7 38.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component TMEM141 PF15110.6 gi|126465046|ref|YP_001040155.1| - 0.1 13.2 0.4 0.1 13.2 0.4 3.2 4 0 0 4 4 4 0 TMEM141 protein family DUF2393 PF09624.10 gi|126465047|ref|YP_001040156.1| - 2.7 8.0 8.5 1.8 8.5 3.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) Fer4_13 PF13370.6 gi|126465048|ref|YP_001040157.1| - 2.6e-22 79.1 3.1 3.3e-22 78.8 3.1 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|126465048|ref|YP_001040157.1| - 2.7e-15 56.8 3.7 3.1e-15 56.7 3.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|126465048|ref|YP_001040157.1| - 0.0015 18.5 2.2 0.0015 18.5 2.2 2.4 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126465048|ref|YP_001040157.1| - 0.012 16.2 3.8 0.25 11.9 4.4 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126465048|ref|YP_001040157.1| - 0.017 14.9 7.4 0.036 13.9 0.9 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126465048|ref|YP_001040157.1| - 0.061 13.9 0.3 0.061 13.9 0.3 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465048|ref|YP_001040157.1| - 0.076 13.1 3.8 0.93 9.7 4.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|126465049|ref|YP_001040158.1| - 0.18 11.7 0.6 0.36 10.7 0.6 1.6 1 0 0 1 1 1 0 NTPase Peptidase_M20 PF01546.28 gi|126465050|ref|YP_001040159.1| - 7.2e-38 130.4 0.1 1.4e-37 129.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|126465050|ref|YP_001040159.1| - 1e-17 64.0 0.0 2.4e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|126465050|ref|YP_001040159.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 Peptidase family M28 Prok-JAB PF14464.6 gi|126465051|ref|YP_001040160.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain CPSase_L_D2 PF02786.17 gi|126465052|ref|YP_001040161.1| - 1.6e-69 233.7 0.1 2.2e-69 233.2 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.19 gi|126465052|ref|YP_001040161.1| - 8.4e-37 125.6 0.0 1.7e-36 124.6 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_carb_N PF00289.22 gi|126465052|ref|YP_001040161.1| - 3.4e-33 114.5 0.0 1.1e-32 112.8 0.0 1.9 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain ATP-grasp PF02222.22 gi|126465052|ref|YP_001040161.1| - 1.5e-09 37.7 0.0 3.2e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|126465052|ref|YP_001040161.1| - 6.6e-08 32.4 0.0 1.3e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|126465052|ref|YP_001040161.1| - 1.6e-07 31.1 0.0 3.6e-07 29.9 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|126465052|ref|YP_001040161.1| - 4.9e-06 26.7 0.0 4.9e-05 23.4 0.0 2.4 3 0 0 3 3 3 1 ATP-grasp domain GARS_A PF01071.19 gi|126465052|ref|YP_001040161.1| - 1.9e-05 24.5 0.0 3.4e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATPgrasp_ST PF14397.6 gi|126465052|ref|YP_001040161.1| - 0.0095 15.2 0.0 0.023 14.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|126465052|ref|YP_001040161.1| - 0.019 14.5 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain GSH-S_ATP PF02955.16 gi|126465052|ref|YP_001040161.1| - 0.024 14.0 0.0 0.16 11.4 0.0 2.3 3 0 0 3 3 3 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|126465052|ref|YP_001040161.1| - 0.035 13.4 0.0 0.32 10.2 0.0 2.1 2 0 0 2 2 2 0 YheC/D like ATP-grasp ATP-grasp_4 PF13535.6 gi|126465052|ref|YP_001040161.1| - 0.051 13.2 0.1 0.3 10.7 0.0 2.3 2 1 0 2 2 2 0 ATP-grasp domain PPDK_N PF01326.19 gi|126465053|ref|YP_001040162.1| - 5.1e-121 403.9 0.1 7.8e-121 403.3 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|126465053|ref|YP_001040162.1| - 2.3e-92 309.3 0.0 3.4e-92 308.7 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|126465053|ref|YP_001040162.1| - 1.4e-28 98.4 1.0 3.3e-28 97.2 1.0 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|126465053|ref|YP_001040162.1| - 0.16 12.4 0.0 0.71 10.2 0.0 2.2 2 1 0 2 2 2 0 Radical SAM superfamily ParA PF10609.9 gi|126465054|ref|YP_001040163.1| - 0.0003 20.3 0.1 0.00057 19.4 0.1 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|126465054|ref|YP_001040163.1| - 0.00047 19.8 0.0 0.0038 16.8 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|126465054|ref|YP_001040163.1| - 0.00073 19.6 1.6 0.0029 17.7 1.5 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|126465054|ref|YP_001040163.1| - 0.0009 19.1 0.3 0.0061 16.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|126465054|ref|YP_001040163.1| - 0.027 14.2 0.1 0.37 10.5 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DapB_N PF01113.20 gi|126465054|ref|YP_001040163.1| - 0.034 14.3 0.3 2.9 8.0 0.0 3.3 4 0 0 4 4 4 0 Dihydrodipicolinate reductase, N-terminus LpxK PF02606.14 gi|126465054|ref|YP_001040163.1| - 0.059 12.5 0.3 0.37 9.8 0.3 2.1 3 0 0 3 3 3 0 Tetraacyldisaccharide-1-P 4'-kinase Zeta_toxin PF06414.12 gi|126465054|ref|YP_001040163.1| - 0.082 12.2 0.1 0.15 11.3 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_31 PF13614.6 gi|126465054|ref|YP_001040163.1| - 0.14 12.1 0.0 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain MipZ PF09140.11 gi|126465054|ref|YP_001040163.1| - 0.14 11.4 0.3 0.37 10.0 0.2 1.7 2 0 0 2 2 2 0 ATPase MipZ MeaB PF03308.16 gi|126465054|ref|YP_001040163.1| - 0.14 11.1 1.9 0.3 10.0 0.3 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Metallophos PF00149.28 gi|126465055|ref|YP_001040164.1| - 0.0007 20.1 5.9 0.0018 18.8 5.9 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126465055|ref|YP_001040164.1| - 0.0042 17.3 0.0 0.0087 16.3 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MT-A70 PF05063.14 gi|126465055|ref|YP_001040164.1| - 0.19 11.7 1.6 0.23 11.4 0.0 1.9 2 0 0 2 2 2 0 MT-A70 AJAP1_PANP_C PF15298.6 gi|126465055|ref|YP_001040164.1| - 0.88 9.8 15.6 1.7 8.9 15.6 1.4 1 0 0 1 1 1 0 AJAP1/PANP C-terminus FSA_C PF10479.9 gi|126465055|ref|YP_001040164.1| - 1.6 6.8 9.2 2.2 6.3 9.2 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus TMEM154 PF15102.6 gi|126465055|ref|YP_001040164.1| - 2.3 8.1 7.3 4.4 7.2 7.3 1.5 1 0 0 1 1 1 0 TMEM154 protein family T2SSE PF00437.20 gi|126465056|ref|YP_001040165.1| - 2.2e-09 36.8 0.0 3.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|126465056|ref|YP_001040165.1| - 8.2e-05 23.1 0.1 0.00022 21.7 0.1 1.8 1 0 0 1 1 1 1 PIN domain AAA_16 PF13191.6 gi|126465056|ref|YP_001040165.1| - 0.00044 20.7 0.0 0.00085 19.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|126465056|ref|YP_001040165.1| - 0.00046 20.0 0.0 0.0012 18.7 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|126465056|ref|YP_001040165.1| - 0.00085 19.9 0.0 0.0024 18.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126465056|ref|YP_001040165.1| - 0.0009 19.7 0.3 0.016 15.6 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|126465056|ref|YP_001040165.1| - 0.0045 16.4 0.0 0.0094 15.3 0.0 1.5 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RuvB_N PF05496.12 gi|126465056|ref|YP_001040165.1| - 0.0056 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|126465056|ref|YP_001040165.1| - 0.0059 16.9 0.0 0.019 15.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|126465056|ref|YP_001040165.1| - 0.0064 16.1 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|126465056|ref|YP_001040165.1| - 0.0068 15.7 0.1 0.015 14.6 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin SRP54 PF00448.22 gi|126465056|ref|YP_001040165.1| - 0.0068 16.1 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|126465056|ref|YP_001040165.1| - 0.012 15.7 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126465056|ref|YP_001040165.1| - 0.013 15.5 0.0 0.039 14.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|126465056|ref|YP_001040165.1| - 0.013 14.5 0.0 0.028 13.4 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|126465056|ref|YP_001040165.1| - 0.016 15.1 0.1 0.031 14.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|126465056|ref|YP_001040165.1| - 0.017 15.1 0.0 0.035 14.1 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.15 gi|126465056|ref|YP_001040165.1| - 0.02 14.8 0.4 0.095 12.6 0.0 2.4 3 0 0 3 3 2 0 NTPase TsaE PF02367.17 gi|126465056|ref|YP_001040165.1| - 0.02 14.9 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|126465056|ref|YP_001040165.1| - 0.027 14.6 0.0 0.11 12.6 0.0 2.1 2 0 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.17 gi|126465056|ref|YP_001040165.1| - 0.033 13.9 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.18 gi|126465056|ref|YP_001040165.1| - 0.035 13.5 0.0 0.41 10.0 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Thymidylate_kin PF02223.17 gi|126465056|ref|YP_001040165.1| - 0.04 13.6 0.0 0.098 12.3 0.0 1.7 1 1 1 2 2 2 0 Thymidylate kinase AAA_22 PF13401.6 gi|126465056|ref|YP_001040165.1| - 0.052 13.8 0.0 0.22 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|126465056|ref|YP_001040165.1| - 0.056 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|126465056|ref|YP_001040165.1| - 0.062 13.0 0.1 0.14 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|126465056|ref|YP_001040165.1| - 0.07 13.5 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.10 gi|126465056|ref|YP_001040165.1| - 0.09 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF815 PF05673.13 gi|126465056|ref|YP_001040165.1| - 0.091 11.9 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|126465056|ref|YP_001040165.1| - 0.092 13.3 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|126465056|ref|YP_001040165.1| - 0.095 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126465056|ref|YP_001040165.1| - 0.11 12.9 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain CstA PF02554.14 gi|126465057|ref|YP_001040166.1| - 1.7e-100 336.5 21.4 1.7e-100 336.5 21.4 2.1 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|126465057|ref|YP_001040166.1| - 3.7e-29 101.4 10.5 3.7e-29 101.4 10.5 2.8 3 1 0 3 3 3 1 5TM C-terminal transporter carbon starvation CstA DUF2749 PF10907.8 gi|126465057|ref|YP_001040166.1| - 5.9 7.1 11.7 4 7.7 1.2 3.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2749) ArsA_ATPase PF02374.15 gi|126465059|ref|YP_001040168.1| - 1.2e-61 208.6 0.0 2e-61 207.8 0.0 1.3 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|126465059|ref|YP_001040168.1| - 1.2e-10 41.6 0.2 2.3e-10 40.7 0.2 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|126465059|ref|YP_001040168.1| - 2.5e-06 27.6 0.0 4.5e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|126465059|ref|YP_001040168.1| - 3.9e-06 26.5 0.1 0.00033 20.2 0.1 2.9 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 gi|126465059|ref|YP_001040168.1| - 0.00015 21.3 0.0 0.00038 20.0 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein ATP_bind_1 PF03029.17 gi|126465059|ref|YP_001040168.1| - 0.0021 17.9 0.2 0.021 14.6 0.1 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein DUF4144 PF13642.6 gi|126465059|ref|YP_001040168.1| - 0.027 15.0 0.1 3.3 8.3 0.0 2.4 2 1 0 2 2 2 0 protein structure with unknown function CLP1_P PF16575.5 gi|126465059|ref|YP_001040168.1| - 0.054 13.3 0.3 10 5.8 0.0 2.6 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|126465059|ref|YP_001040168.1| - 0.06 13.0 0.1 0.17 11.5 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|126465059|ref|YP_001040168.1| - 0.071 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.18 gi|126465059|ref|YP_001040168.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Hjc PF01870.18 gi|126465061|ref|YP_001040170.1| - 1.9e-27 95.1 0.3 2.7e-27 94.6 0.3 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|126465061|ref|YP_001040170.1| - 0.038 13.5 0.1 0.15 11.6 0.1 2.0 1 1 0 1 1 1 0 REase_AHJR-like Metallophos PF00149.28 gi|126465062|ref|YP_001040171.1| - 1.3e-18 68.3 3.2 2.7e-18 67.2 3.2 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126465062|ref|YP_001040171.1| - 0.0024 18.1 0.0 0.012 15.8 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Podoplanin PF05808.11 gi|126465062|ref|YP_001040171.1| - 0.03 14.4 18.9 0.05 13.7 18.9 1.3 1 0 0 1 1 1 0 Podoplanin RIFIN PF02009.16 gi|126465062|ref|YP_001040171.1| - 0.094 12.6 0.9 0.13 12.1 0.9 1.1 1 0 0 1 1 1 0 Rifin SKG6 PF08693.10 gi|126465062|ref|YP_001040171.1| - 1.9 8.0 8.8 4.8 6.7 8.8 1.7 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF5305 PF17231.2 gi|126465062|ref|YP_001040171.1| - 2.9 7.2 12.7 6.2 6.2 12.7 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Glucodextran_C PF09985.9 gi|126465063|ref|YP_001040172.1| - 3.9e-78 262.0 1.0 6.8e-78 261.2 1.0 1.3 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase ABC_transp_aux PF09822.9 gi|126465063|ref|YP_001040172.1| - 6e-12 45.6 0.0 7.4e-05 22.3 0.0 2.3 2 0 0 2 2 2 2 ABC-type uncharacterized transport system Mucin PF01456.17 gi|126465063|ref|YP_001040172.1| - 0.00014 21.8 52.8 0.00025 21.0 52.8 1.3 1 0 0 1 1 1 1 Mucin-like glycoprotein RIFIN PF02009.16 gi|126465063|ref|YP_001040172.1| - 0.00088 19.3 4.2 0.0012 18.8 4.2 1.2 1 0 0 1 1 1 1 Rifin DUF4350 PF14258.6 gi|126465063|ref|YP_001040172.1| - 0.0079 16.6 0.1 0.054 13.9 0.0 3.8 5 0 0 5 5 2 2 Domain of unknown function (DUF4350) MID_MedPIWI PF18296.1 gi|126465063|ref|YP_001040172.1| - 0.013 15.3 0.5 0.02 14.7 0.5 1.2 1 0 0 1 1 1 0 MID domain of medPIWI Phage_holin_2_3 PF16080.5 gi|126465063|ref|YP_001040172.1| - 0.016 14.9 1.4 0.041 13.6 1.4 1.7 1 0 0 1 1 1 0 Bacteriophage holin family HP1 TMEM154 PF15102.6 gi|126465063|ref|YP_001040172.1| - 0.041 13.8 15.5 0.13 12.2 15.5 1.9 1 0 0 1 1 1 0 TMEM154 protein family Stevor PF17410.2 gi|126465063|ref|YP_001040172.1| - 0.047 13.2 1.9 0.074 12.6 1.9 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF4064 PF13273.6 gi|126465063|ref|YP_001040172.1| - 0.061 13.6 0.4 0.061 13.6 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Gemini_mov PF01708.16 gi|126465063|ref|YP_001040172.1| - 0.1 12.4 0.4 0.23 11.2 0.4 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein PGM_PMM_II PF02879.16 gi|126465063|ref|YP_001040172.1| - 0.12 13.0 0.0 24 5.6 0.0 2.5 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DUF485 PF04341.12 gi|126465063|ref|YP_001040172.1| - 0.22 11.5 3.0 0.6 10.1 3.0 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF485 MGC-24 PF05283.11 gi|126465063|ref|YP_001040172.1| - 0.59 10.6 18.1 1.2 9.5 18.1 1.5 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Pex14_N PF04695.13 gi|126465063|ref|YP_001040172.1| - 1.6 9.3 7.3 3 8.5 7.3 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF5305 PF17231.2 gi|126465063|ref|YP_001040172.1| - 3.3 7.1 13.3 5.7 6.3 13.3 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5305) SBP_bac_6 PF13343.6 gi|126465064|ref|YP_001040173.1| - 5.8e-19 68.5 0.3 8.7e-19 67.9 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|126465064|ref|YP_001040173.1| - 1.8e-18 67.4 1.9 3.4e-18 66.5 1.9 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126465064|ref|YP_001040173.1| - 4.6e-14 53.1 6.7 1.4e-13 51.5 6.7 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|126465064|ref|YP_001040173.1| - 0.00061 19.6 0.9 0.001 18.9 0.0 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein MGC-24 PF05283.11 gi|126465064|ref|YP_001040173.1| - 0.00061 20.3 11.4 0.0011 19.4 11.4 1.4 1 0 0 1 1 1 1 Multi-glycosylated core protein 24 (MGC-24), sialomucin AJAP1_PANP_C PF15298.6 gi|126465064|ref|YP_001040173.1| - 0.00085 19.6 21.0 0.0015 18.8 21.0 1.3 1 0 0 1 1 1 1 AJAP1/PANP C-terminus RIFIN PF02009.16 gi|126465064|ref|YP_001040173.1| - 0.026 14.5 0.4 0.036 14.0 0.4 1.4 1 0 0 1 1 1 0 Rifin DUF4366 PF14283.6 gi|126465064|ref|YP_001040173.1| - 0.086 12.9 0.3 0.16 12.0 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Mucin PF01456.17 gi|126465064|ref|YP_001040173.1| - 0.45 10.5 46.2 0.97 9.4 46.2 1.5 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF5305 PF17231.2 gi|126465064|ref|YP_001040173.1| - 1.5 8.1 8.5 2.9 7.2 8.5 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5305) BPD_transp_1 PF00528.22 gi|126465065|ref|YP_001040174.1| - 2.4e-19 69.8 44.4 4.5e-11 42.8 21.9 4.7 3 2 2 5 5 5 2 Binding-protein-dependent transport system inner membrane component Sterol_MT_C PF08498.10 gi|126465065|ref|YP_001040174.1| - 0.0066 16.7 0.0 0.022 15.1 0.0 1.9 1 0 0 1 1 1 1 Sterol methyltransferase C-terminal ABC_tran PF00005.27 gi|126465066|ref|YP_001040175.1| - 8.8e-34 117.0 0.0 1.5e-33 116.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465066|ref|YP_001040175.1| - 4.8e-09 36.5 0.2 2.8e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|126465066|ref|YP_001040175.1| - 6.3e-08 32.7 0.0 1.5e-06 28.3 0.0 2.5 2 0 0 2 2 2 1 TOBE domain Rad17 PF03215.15 gi|126465066|ref|YP_001040175.1| - 0.0028 17.6 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|126465066|ref|YP_001040175.1| - 0.0036 17.7 0.0 0.0064 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_22 PF13401.6 gi|126465066|ref|YP_001040175.1| - 0.0077 16.5 1.7 0.068 13.4 1.7 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126465066|ref|YP_001040175.1| - 0.0094 16.4 0.0 0.1 13.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|126465066|ref|YP_001040175.1| - 0.023 14.1 0.2 0.12 11.7 0.2 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126465066|ref|YP_001040175.1| - 0.032 14.7 0.3 0.065 13.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|126465066|ref|YP_001040175.1| - 0.034 13.6 0.3 0.28 10.6 0.2 2.0 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|126465066|ref|YP_001040175.1| - 0.073 13.4 0.0 0.18 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|126465066|ref|YP_001040175.1| - 0.13 12.5 0.3 0.7 10.1 0.0 2.3 3 0 0 3 3 3 0 AAA domain HD PF01966.22 gi|126465067|ref|YP_001040176.1| - 1.9e-11 44.2 0.2 4.9e-11 42.9 0.1 1.7 2 0 0 2 2 2 1 HD domain Band_7 PF01145.25 gi|126465068|ref|YP_001040177.1| - 1.5e-36 126.1 2.4 1.8e-36 125.8 2.4 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|126465068|ref|YP_001040177.1| - 0.00034 20.4 0.2 0.00079 19.2 0.1 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|126465069|ref|YP_001040178.1| - 3e-11 43.5 0.1 1.2e-10 41.6 0.1 2.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|126465069|ref|YP_001040178.1| - 0.00094 19.1 0.1 0.0016 18.4 0.1 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|126465069|ref|YP_001040178.1| - 0.0024 17.0 0.3 0.004 16.2 0.3 1.5 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Metallophos_2 PF12850.7 gi|126465070|ref|YP_001040179.1| - 2.4e-15 57.1 0.0 3.3e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|126465070|ref|YP_001040179.1| - 1.6e-07 32.0 1.0 0.00011 22.8 0.5 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF211 PF02680.14 gi|126465073|ref|YP_001040182.1| - 5.6e-35 119.4 8.0 6.3e-35 119.2 8.0 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Ribosomal_L13e PF01294.18 gi|126465074|ref|YP_001040183.1| - 4.3e-12 46.2 0.1 4.6e-12 46.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e RHH_1 PF01402.21 gi|126465075|ref|YP_001040184.1| - 0.00013 21.7 0.0 0.00027 20.7 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF3781 PF12636.7 gi|126465075|ref|YP_001040184.1| - 0.025 14.5 0.1 0.1 12.5 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3781) TrmB PF01978.19 gi|126465076|ref|YP_001040185.1| - 5.1e-07 29.5 0.2 9.3e-07 28.6 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|126465076|ref|YP_001040185.1| - 0.0019 18.0 0.3 0.2 11.5 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain PC4 PF02229.16 gi|126465076|ref|YP_001040185.1| - 0.012 15.2 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional Coactivator p15 (PC4) Rrf2 PF02082.20 gi|126465076|ref|YP_001040185.1| - 0.017 15.5 0.2 1.4 9.3 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator PI-TkoII_IV PF18714.1 gi|126465076|ref|YP_001040185.1| - 0.083 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV Sulfolobus_pRN PF05584.11 gi|126465076|ref|YP_001040185.1| - 0.098 12.7 0.5 0.19 11.8 0.5 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_5 PF01022.20 gi|126465076|ref|YP_001040185.1| - 0.1 12.5 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GnsAB_toxin PF08178.11 gi|126465076|ref|YP_001040185.1| - 0.33 10.9 2.0 11 6.1 0.1 2.8 2 1 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system PhoU_div PF01865.16 gi|126465077|ref|YP_001040186.1| - 4.5e-32 111.1 7.0 5.2e-32 110.9 7.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|126465077|ref|YP_001040186.1| - 3.7e-05 24.1 9.0 0.00091 19.6 2.1 2.5 2 1 0 2 2 2 2 PhoU domain RTTN_N PF14726.6 gi|126465077|ref|YP_001040186.1| - 0.31 11.9 3.5 1.4 9.8 0.1 2.8 3 0 0 3 3 3 0 Rotatin, an armadillo repeat protein, centriole functioning DASH_Duo1 PF08651.10 gi|126465077|ref|YP_001040186.1| - 2.2 8.1 6.5 7.2 6.5 0.3 3.5 4 0 0 4 4 4 0 DASH complex subunit Duo1 Peptidase_M17 PF00883.21 gi|126465078|ref|YP_001040187.1| - 1e-119 399.4 0.0 1.3e-119 399.1 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.17 gi|126465078|ref|YP_001040187.1| - 6.9e-09 35.6 0.0 1.7e-08 34.4 0.0 1.7 1 0 0 1 1 1 1 Cytosol aminopeptidase family, N-terminal domain P35 PF02331.15 gi|126465079|ref|YP_001040188.1| - 0.007 15.8 0.1 0.0078 15.6 0.1 1.1 1 0 0 1 1 1 1 Apoptosis preventing protein ABC2_membrane_3 PF12698.7 gi|126465080|ref|YP_001040189.1| - 2.2e-20 73.1 43.3 2.8e-20 72.7 43.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|126465080|ref|YP_001040189.1| - 2e-10 40.5 34.7 5.9e-10 38.9 34.7 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|126465080|ref|YP_001040189.1| - 2.7e-05 23.7 34.5 0.00055 19.4 24.6 3.7 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|126465080|ref|YP_001040189.1| - 0.0026 17.7 13.2 0.0026 17.7 13.2 3.1 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|126465081|ref|YP_001040190.1| - 5.7e-28 98.1 0.0 7.8e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465081|ref|YP_001040190.1| - 7.7e-12 45.6 1.4 9.5e-05 22.3 0.1 2.8 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126465081|ref|YP_001040190.1| - 0.00093 19.8 1.8 0.0016 19.0 1.8 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|126465081|ref|YP_001040190.1| - 0.0011 18.4 0.1 0.88 9.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126465081|ref|YP_001040190.1| - 0.0039 16.9 0.1 0.0071 16.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|126465081|ref|YP_001040190.1| - 0.0081 15.9 0.0 0.018 14.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|126465081|ref|YP_001040190.1| - 0.014 15.1 0.1 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|126465081|ref|YP_001040190.1| - 0.023 15.1 0.0 0.047 14.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|126465081|ref|YP_001040190.1| - 0.026 14.5 0.0 0.044 13.7 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|126465081|ref|YP_001040190.1| - 0.059 13.1 0.3 0.15 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126465081|ref|YP_001040190.1| - 0.095 13.0 0.1 0.24 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126465081|ref|YP_001040190.1| - 0.18 12.2 0.3 0.27 11.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain NTP_transf_3 PF12804.7 gi|126465082|ref|YP_001040191.1| - 3e-28 99.2 0.0 3.6e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|126465082|ref|YP_001040191.1| - 1.1e-08 35.3 0.0 1.2e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|126465082|ref|YP_001040191.1| - 4.4e-06 26.6 0.0 5.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|126465082|ref|YP_001040191.1| - 0.0034 17.0 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Glycos_transf_2 PF00535.26 gi|126465082|ref|YP_001040191.1| - 0.033 14.0 0.2 0.065 13.0 0.2 1.4 1 1 0 1 1 1 0 Glycosyl transferase family 2 PIG-L PF02585.17 gi|126465082|ref|YP_001040191.1| - 0.19 12.4 0.0 0.38 11.4 0.0 1.5 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase HypD PF01924.16 gi|126465083|ref|YP_001040192.1| - 9.6e-127 422.9 0.0 1.2e-126 422.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Usp PF00582.26 gi|126465084|ref|YP_001040193.1| - 5.9e-06 26.8 0.0 1.4e-05 25.6 0.0 1.8 1 0 0 1 1 1 1 Universal stress protein family MTD PF01993.18 gi|126465084|ref|YP_001040193.1| - 0.02 14.2 0.1 0.029 13.7 0.1 1.2 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase CitMHS PF03600.16 gi|126465085|ref|YP_001040194.1| - 5e-54 183.5 34.3 5e-54 183.5 34.3 2.0 1 1 1 2 2 2 1 Citrate transporter ArsB PF02040.15 gi|126465085|ref|YP_001040194.1| - 6.9e-07 28.9 34.4 1e-06 28.4 34.4 1.1 1 0 0 1 1 1 1 Arsenical pump membrane protein NhaB PF06450.12 gi|126465085|ref|YP_001040194.1| - 3.5e-06 26.2 0.2 3.5e-06 26.2 0.2 3.8 1 1 1 4 4 4 2 Bacterial Na+/H+ antiporter B (NhaB) DcuA_DcuB PF03605.14 gi|126465085|ref|YP_001040194.1| - 0.00032 19.7 10.1 0.00081 18.4 10.1 1.6 1 0 0 1 1 1 1 Anaerobic c4-dicarboxylate membrane transporter UPRTase PF14681.6 gi|126465086|ref|YP_001040195.1| - 2.4e-47 161.1 0.0 3e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|126465086|ref|YP_001040195.1| - 2.1e-11 43.6 0.1 4.4e-11 42.6 0.1 1.5 1 1 1 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|126465086|ref|YP_001040195.1| - 0.0043 16.6 0.1 0.0055 16.2 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase F420_ligase PF01996.16 gi|126465087|ref|YP_001040196.1| - 0.13 11.6 0.1 0.33 10.3 0.1 1.3 1 1 0 1 1 1 0 F420-0:Gamma-glutamyl ligase ParA PF10609.9 gi|126465088|ref|YP_001040197.1| - 3.1e-46 157.8 0.0 2.3e-45 155.0 0.0 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|126465088|ref|YP_001040197.1| - 1.1e-12 48.1 0.0 1.4e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|126465088|ref|YP_001040197.1| - 5.8e-08 32.9 0.0 8.2e-06 25.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|126465088|ref|YP_001040197.1| - 3.6e-05 23.7 0.5 0.0051 16.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|126465088|ref|YP_001040197.1| - 0.0003 20.1 0.2 0.04 13.1 0.0 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase MipZ PF09140.11 gi|126465088|ref|YP_001040197.1| - 0.045 13.0 0.0 0.066 12.5 0.0 1.3 1 1 0 1 1 1 0 ATPase MipZ HypA PF01155.19 gi|126465089|ref|YP_001040198.1| - 5.9e-23 81.0 0.0 7.3e-23 80.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|126465089|ref|YP_001040198.1| - 0.0019 18.6 0.0 1.6 9.2 0.0 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar Mu-like_Com PF10122.9 gi|126465089|ref|YP_001040198.1| - 0.0021 17.5 0.2 0.86 9.1 0.0 2.9 3 0 0 3 3 3 1 Mu-like prophage protein Com Rubredoxin PF00301.20 gi|126465089|ref|YP_001040198.1| - 0.0033 17.4 0.4 0.006 16.6 0.4 1.4 1 0 0 1 1 1 1 Rubredoxin TFIIS_C PF01096.18 gi|126465089|ref|YP_001040198.1| - 0.0048 16.7 1.3 2.6 8.0 0.1 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Ribosomal_L37e PF01907.19 gi|126465089|ref|YP_001040198.1| - 0.0075 16.4 0.2 1.1 9.5 0.0 2.3 2 0 0 2 2 2 1 Ribosomal protein L37e Zn_Tnp_IS1595 PF12760.7 gi|126465089|ref|YP_001040198.1| - 0.011 15.7 0.1 0.66 10.0 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|126465089|ref|YP_001040198.1| - 0.011 15.0 1.3 0.019 14.3 0.1 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.9 gi|126465089|ref|YP_001040198.1| - 0.015 15.3 4.3 0.089 12.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|126465089|ref|YP_001040198.1| - 0.016 14.7 0.5 0.15 11.6 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|126465089|ref|YP_001040198.1| - 0.022 14.7 0.3 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|126465089|ref|YP_001040198.1| - 0.033 14.2 0.6 7.4 6.7 0.0 2.2 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.11 gi|126465089|ref|YP_001040198.1| - 0.043 13.7 0.4 17 5.4 0.0 3.0 3 0 0 3 3 3 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|126465089|ref|YP_001040198.1| - 0.045 13.7 0.6 5.8 7.0 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Mcm10 PF09332.11 gi|126465089|ref|YP_001040198.1| - 0.063 12.7 0.0 0.071 12.5 0.0 1.1 1 0 0 1 1 1 0 Mcm10 replication factor zf-CSL PF05207.13 gi|126465089|ref|YP_001040198.1| - 0.068 12.9 2.3 1.3 8.8 0.2 2.3 1 1 1 2 2 2 0 CSL zinc finger zf-ZPR1 PF03367.13 gi|126465089|ref|YP_001040198.1| - 0.068 13.0 0.7 0.24 11.2 0.7 1.9 1 1 1 2 2 2 0 ZPR1 zinc-finger domain Zn-ribbon_8 PF09723.10 gi|126465089|ref|YP_001040198.1| - 0.076 13.1 0.1 7.2 6.8 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|126465089|ref|YP_001040198.1| - 0.21 11.5 5.9 0.74 9.7 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.8 gi|126465089|ref|YP_001040198.1| - 0.31 11.0 3.7 0.89 9.5 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNA_POL_M_15KD PF02150.16 gi|126465089|ref|YP_001040198.1| - 0.33 10.9 1.9 2 8.4 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|126465089|ref|YP_001040198.1| - 0.43 10.4 4.1 9.7 6.1 0.9 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HMG-CoA_red PF00368.18 gi|126465090|ref|YP_001040199.1| - 1.9e-110 369.4 4.5 2.2e-110 369.2 4.5 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Phasin_2 PF09361.10 gi|126465090|ref|YP_001040199.1| - 0.063 13.5 0.0 0.25 11.6 0.0 2.0 1 1 0 1 1 1 0 Phasin protein Big_7 PF17957.1 gi|126465091|ref|YP_001040200.1| - 0.00077 20.2 16.4 0.077 13.8 0.6 5.9 6 0 0 6 6 6 2 Bacterial Ig domain TcfC PF16967.5 gi|126465091|ref|YP_001040200.1| - 0.009 15.5 4.3 0.055 13.0 0.7 3.4 4 0 0 4 4 4 1 E-set like domain DUF4399 PF14347.6 gi|126465091|ref|YP_001040200.1| - 0.04 14.3 0.2 1.3 9.4 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4399) Rep_fac-A_3 PF08661.11 gi|126465091|ref|YP_001040200.1| - 0.22 11.9 1.9 0.82 10.0 1.9 2.0 1 0 0 1 1 1 0 Replication factor A protein 3 Thi4 PF01946.17 gi|126465092|ref|YP_001040201.1| - 1.9e-05 24.0 0.0 4e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|126465092|ref|YP_001040201.1| - 0.0013 18.9 0.0 0.0034 17.6 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|126465092|ref|YP_001040201.1| - 0.046 14.0 0.0 0.081 13.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DAO PF01266.24 gi|126465092|ref|YP_001040201.1| - 0.051 13.1 0.0 1.1 8.8 0.0 2.5 2 1 0 3 3 3 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|126465092|ref|YP_001040201.1| - 0.083 13.5 0.1 0.33 11.5 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|126465092|ref|YP_001040201.1| - 0.14 11.3 0.0 1.4 8.0 0.0 2.0 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_4 PF00953.21 gi|126465093|ref|YP_001040202.1| - 1.2e-31 109.9 17.7 1.2e-31 109.9 17.7 2.3 3 0 0 3 3 3 1 Glycosyl transferase family 4 ERCC4 PF02732.15 gi|126465094|ref|YP_001040203.1| - 4.2e-18 66.0 0.0 7.1e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|126465094|ref|YP_001040203.1| - 5.5e-11 42.4 0.0 1e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|126465094|ref|YP_001040203.1| - 2.7e-08 34.3 0.0 6.2e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|126465094|ref|YP_001040203.1| - 2.5e-06 27.1 0.1 2.1e-05 24.2 0.0 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif VWA_3 PF13768.6 gi|126465094|ref|YP_001040203.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain Pex2_Pex12 PF04757.14 gi|126465094|ref|YP_001040203.1| - 0.063 12.8 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region Gln-synt_C PF00120.24 gi|126465095|ref|YP_001040204.1| - 1.4e-120 402.4 0.0 1.7e-120 402.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|126465095|ref|YP_001040204.1| - 6.6e-15 54.6 0.0 1.2e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AsnC_trans_reg PF01037.21 gi|126465096|ref|YP_001040205.1| - 3.9e-17 62.0 0.0 6.6e-17 61.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|126465096|ref|YP_001040205.1| - 6.6e-14 51.2 0.6 1.1e-13 50.4 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|126465096|ref|YP_001040205.1| - 5.4e-11 42.1 0.2 9.5e-11 41.4 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|126465096|ref|YP_001040205.1| - 1.2e-05 25.0 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126465096|ref|YP_001040205.1| - 4.7e-05 23.4 0.0 9.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|126465096|ref|YP_001040205.1| - 5.7e-05 22.9 0.0 0.00013 21.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|126465096|ref|YP_001040205.1| - 0.00017 21.5 0.0 0.0004 20.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|126465096|ref|YP_001040205.1| - 0.00017 21.3 0.0 0.00029 20.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|126465096|ref|YP_001040205.1| - 0.00026 20.7 0.1 0.00054 19.7 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|126465096|ref|YP_001040205.1| - 0.00042 20.2 0.8 0.00088 19.2 0.3 1.8 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|126465096|ref|YP_001040205.1| - 0.0019 18.3 0.0 0.0033 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|126465096|ref|YP_001040205.1| - 0.0042 16.8 0.1 0.0079 15.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4299 PF14132.6 gi|126465096|ref|YP_001040205.1| - 0.0069 15.9 0.3 0.0084 15.6 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4299) Sigma70_r4_2 PF08281.12 gi|126465096|ref|YP_001040205.1| - 0.012 15.3 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|126465096|ref|YP_001040205.1| - 0.014 15.3 0.1 0.028 14.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|126465096|ref|YP_001040205.1| - 0.043 13.9 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_WhiA PF02650.14 gi|126465096|ref|YP_001040205.1| - 0.052 13.9 0.3 2.8 8.3 0.1 2.2 2 0 0 2 2 2 0 WhiA C-terminal HTH domain AsnC_trans_reg2 PF17805.1 gi|126465096|ref|YP_001040205.1| - 0.06 13.5 0.0 0.13 12.5 0.0 1.5 2 0 0 2 2 2 0 AsnC-like ligand binding domain MarR_2 PF12802.7 gi|126465096|ref|YP_001040205.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.16 gi|126465096|ref|YP_001040205.1| - 0.09 12.6 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.20 gi|126465096|ref|YP_001040205.1| - 0.091 13.1 0.0 0.91 9.9 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|126465096|ref|YP_001040205.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor PadR PF03551.14 gi|126465096|ref|YP_001040205.1| - 0.12 12.4 0.0 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family PALP PF00291.25 gi|126465097|ref|YP_001040206.1| - 1.2e-69 234.9 0.0 2.2e-69 234.1 0.0 1.4 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme HTH_11 PF08279.12 gi|126465097|ref|YP_001040206.1| - 9.2e-06 25.5 0.2 2.2e-05 24.3 0.1 1.7 2 0 0 2 2 1 1 HTH domain HTH_24 PF13412.6 gi|126465097|ref|YP_001040206.1| - 0.0002 20.8 0.2 0.0005 19.6 0.2 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126465097|ref|YP_001040206.1| - 0.00063 19.6 0.1 0.0013 18.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|126465097|ref|YP_001040206.1| - 0.00068 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|126465097|ref|YP_001040206.1| - 0.0019 18.1 0.7 0.0065 16.4 0.4 2.1 2 0 0 2 2 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|126465097|ref|YP_001040206.1| - 0.0098 15.8 0.3 0.038 13.9 0.1 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|126465097|ref|YP_001040206.1| - 0.014 15.5 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HypA PF01155.19 gi|126465097|ref|YP_001040206.1| - 0.018 15.0 0.2 0.036 14.1 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|126465097|ref|YP_001040206.1| - 0.077 13.2 0.4 0.16 12.2 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Rubredoxin_2 PF18073.1 gi|126465097|ref|YP_001040206.1| - 0.08 12.7 4.4 0.14 11.9 4.4 1.3 1 0 0 1 1 1 0 Rubredoxin metal binding domain 3HCDH_N PF02737.18 gi|126465097|ref|YP_001040206.1| - 0.09 12.7 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B-block_TFIIIC PF04182.12 gi|126465097|ref|YP_001040206.1| - 0.11 12.7 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RPA_C PF08784.11 gi|126465097|ref|YP_001040206.1| - 0.16 12.7 0.0 0.3 11.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal LexA_DNA_bind PF01726.16 gi|126465097|ref|YP_001040206.1| - 0.19 11.5 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain zf-ribbon_3 PF13248.6 gi|126465097|ref|YP_001040206.1| - 0.4 10.1 2.3 0.4 10.2 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain ECF-ribofla_trS PF07155.12 gi|126465098|ref|YP_001040207.1| - 4.9e-27 95.0 30.5 2.3e-21 76.5 16.1 2.1 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component 5TM-5TMR_LYT PF07694.12 gi|126465098|ref|YP_001040207.1| - 5.2e-06 26.1 13.5 5.2e-06 26.1 13.5 2.1 1 1 0 2 2 2 2 5TMR of 5TMR-LYT LapA_dom PF06305.11 gi|126465098|ref|YP_001040207.1| - 0.011 15.5 1.6 0.011 15.5 1.6 4.2 4 1 1 5 5 5 0 Lipopolysaccharide assembly protein A domain DUF2897 PF11446.8 gi|126465098|ref|YP_001040207.1| - 0.2 11.6 4.5 0.56 10.1 4.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) DUF3624 PF12292.8 gi|126465098|ref|YP_001040207.1| - 1.5 9.3 6.5 1.2 9.6 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) Phage_Coat_Gp8 PF05371.12 gi|126465098|ref|YP_001040207.1| - 5.4 6.9 11.0 2.3 8.1 1.5 3.1 3 0 0 3 3 3 0 Phage major coat protein, Gp8 DUF4131 PF13567.6 gi|126465098|ref|YP_001040207.1| - 5.4 6.6 10.0 0.84 9.3 2.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|126465099|ref|YP_001040208.1| - 4.7e-46 156.7 0.0 1.3e-23 84.0 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|126465099|ref|YP_001040208.1| - 4e-17 63.0 11.7 8e-07 29.1 0.1 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126465099|ref|YP_001040208.1| - 1.3e-09 37.7 1.2 0.00034 20.3 0.2 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126465099|ref|YP_001040208.1| - 5.5e-09 36.8 6.2 0.00026 21.6 0.4 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|126465099|ref|YP_001040208.1| - 3.1e-08 34.2 0.0 0.00023 21.6 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|126465099|ref|YP_001040208.1| - 1.6e-07 31.7 0.1 0.0002 21.6 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|126465099|ref|YP_001040208.1| - 2.1e-07 31.0 2.7 0.052 13.3 0.9 3.4 3 1 0 4 4 3 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126465099|ref|YP_001040208.1| - 3.4e-07 30.3 0.8 0.0014 18.6 0.2 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA_30 PF13604.6 gi|126465099|ref|YP_001040208.1| - 8.6e-07 28.9 0.5 0.012 15.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|126465099|ref|YP_001040208.1| - 1.1e-06 28.7 0.6 0.015 15.2 0.2 2.5 2 0 0 2 2 2 2 NACHT domain SMC_N PF02463.19 gi|126465099|ref|YP_001040208.1| - 2.7e-06 27.0 3.1 0.63 9.4 0.0 3.2 3 0 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|126465099|ref|YP_001040208.1| - 7.6e-06 26.5 0.0 0.17 12.4 0.0 3.2 3 0 0 3 3 3 2 AAA domain NTPase_1 PF03266.15 gi|126465099|ref|YP_001040208.1| - 1.4e-05 25.1 4.7 0.0013 18.7 0.4 2.5 2 0 0 2 2 2 1 NTPase MobB PF03205.14 gi|126465099|ref|YP_001040208.1| - 1.8e-05 24.7 4.5 0.0044 16.9 0.5 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|126465099|ref|YP_001040208.1| - 2.4e-05 23.6 3.5 0.0041 16.2 0.3 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein Rad17 PF03215.15 gi|126465099|ref|YP_001040208.1| - 2.4e-05 24.3 0.2 0.03 14.2 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain cobW PF02492.19 gi|126465099|ref|YP_001040208.1| - 2.6e-05 23.9 5.4 0.0062 16.1 0.5 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|126465099|ref|YP_001040208.1| - 7.9e-05 22.5 0.9 0.059 13.1 0.0 3.1 3 1 1 4 4 3 1 AAA domain AAA_14 PF13173.6 gi|126465099|ref|YP_001040208.1| - 9.5e-05 22.4 0.1 0.1 12.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|126465099|ref|YP_001040208.1| - 0.00011 22.2 3.0 0.0014 18.6 0.2 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|126465099|ref|YP_001040208.1| - 0.00016 21.7 1.7 0.14 12.1 0.2 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|126465099|ref|YP_001040208.1| - 0.00019 21.3 0.1 0.06 13.1 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|126465099|ref|YP_001040208.1| - 0.00021 20.6 0.0 0.096 11.8 0.1 2.2 2 0 0 2 2 2 1 NB-ARC domain CbiA PF01656.23 gi|126465099|ref|YP_001040208.1| - 0.00033 20.7 2.4 0.38 10.8 0.0 3.0 3 0 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 gi|126465099|ref|YP_001040208.1| - 0.00039 20.7 0.1 0.55 10.4 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|126465099|ref|YP_001040208.1| - 0.00043 20.7 0.8 1 9.8 0.0 3.0 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Pox_A32 PF04665.12 gi|126465099|ref|YP_001040208.1| - 0.00071 19.1 1.6 0.0059 16.1 0.2 2.2 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_19 PF13245.6 gi|126465099|ref|YP_001040208.1| - 0.00074 19.9 0.1 0.078 13.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|126465099|ref|YP_001040208.1| - 0.00092 18.7 0.2 0.066 12.7 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein DUF2075 PF09848.9 gi|126465099|ref|YP_001040208.1| - 0.0011 18.3 0.1 0.022 14.0 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|126465099|ref|YP_001040208.1| - 0.0012 18.1 0.6 0.69 9.1 0.1 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|126465099|ref|YP_001040208.1| - 0.0013 18.9 0.4 0.33 11.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|126465099|ref|YP_001040208.1| - 0.0014 19.0 0.2 0.79 10.1 0.0 2.6 2 0 0 2 2 2 1 RNA helicase dNK PF01712.19 gi|126465099|ref|YP_001040208.1| - 0.0019 18.1 1.1 1.7 8.5 0.2 2.3 2 0 0 2 2 2 2 Deoxynucleoside kinase PIF1 PF05970.14 gi|126465099|ref|YP_001040208.1| - 0.0034 16.6 2.1 0.21 10.7 0.2 2.1 2 0 0 2 2 2 1 PIF1-like helicase MeaB PF03308.16 gi|126465099|ref|YP_001040208.1| - 0.0048 15.9 0.1 1.7 7.6 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|126465099|ref|YP_001040208.1| - 0.01 15.6 0.7 0.56 9.9 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Thymidylate_kin PF02223.17 gi|126465099|ref|YP_001040208.1| - 0.013 15.2 0.4 1.5 8.4 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase KAP_NTPase PF07693.14 gi|126465099|ref|YP_001040208.1| - 0.014 14.6 0.0 2.8 7.1 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain DLIC PF05783.11 gi|126465099|ref|YP_001040208.1| - 0.015 14.1 1.0 0.41 9.4 0.1 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) Viral_helicase1 PF01443.18 gi|126465099|ref|YP_001040208.1| - 0.015 15.0 0.9 0.25 11.1 0.1 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Mg_chelatase PF01078.21 gi|126465099|ref|YP_001040208.1| - 0.027 13.9 0.5 3.7 6.9 0.1 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|126465099|ref|YP_001040208.1| - 0.027 14.5 4.5 0.49 10.5 0.2 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|126465099|ref|YP_001040208.1| - 0.03 13.7 1.7 2 7.7 0.1 2.6 3 0 0 3 3 2 0 KaiC FtsK_SpoIIIE PF01580.18 gi|126465099|ref|YP_001040208.1| - 0.03 13.7 0.1 0.03 13.7 0.1 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.25 gi|126465099|ref|YP_001040208.1| - 0.032 13.9 0.0 5.6 6.5 0.1 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.9 gi|126465099|ref|YP_001040208.1| - 0.033 13.9 1.8 1.9 8.2 0.2 2.8 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.18 gi|126465099|ref|YP_001040208.1| - 0.048 12.9 1.2 0.25 10.6 0.1 2.1 2 0 0 2 2 2 0 Septin AAA_27 PF13514.6 gi|126465099|ref|YP_001040208.1| - 0.056 13.0 0.5 6.1 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|126465099|ref|YP_001040208.1| - 0.061 13.1 0.0 2 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|126465099|ref|YP_001040208.1| - 0.061 12.9 4.0 3.7 7.1 0.3 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|126465099|ref|YP_001040208.1| - 0.07 13.0 1.2 0.92 9.4 0.1 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_5 PF07728.14 gi|126465099|ref|YP_001040208.1| - 0.08 12.9 1.3 2.2 8.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|126465099|ref|YP_001040208.1| - 0.092 13.0 0.0 22 5.4 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 gi|126465099|ref|YP_001040208.1| - 0.11 12.0 0.5 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region MukB PF04310.12 gi|126465099|ref|YP_001040208.1| - 0.11 12.3 0.3 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal AAA_13 PF13166.6 gi|126465099|ref|YP_001040208.1| - 0.14 10.7 3.0 0.72 8.4 0.3 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|126465099|ref|YP_001040208.1| - 0.15 11.6 2.4 1.4 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|126465099|ref|YP_001040208.1| - 0.15 12.2 1.1 4.5 7.5 0.1 2.7 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase TrwB_AAD_bind PF10412.9 gi|126465099|ref|YP_001040208.1| - 0.16 10.8 1.1 3 6.7 0.1 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ATP_bind_2 PF03668.15 gi|126465099|ref|YP_001040208.1| - 0.19 11.0 1.1 0.92 8.8 0.1 2.1 2 0 0 2 2 2 0 P-loop ATPase protein family CLP1_P PF16575.5 gi|126465099|ref|YP_001040208.1| - 0.19 11.5 1.7 3.3 7.4 0.2 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_10 PF12846.7 gi|126465099|ref|YP_001040208.1| - 0.23 10.4 1.3 5.1 5.9 0.1 2.8 3 0 0 3 3 3 0 AAA-like domain DUF3584 PF12128.8 gi|126465099|ref|YP_001040208.1| - 0.71 7.3 4.1 0.87 7.0 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) ABC_ATPase PF09818.9 gi|126465099|ref|YP_001040208.1| - 0.74 8.5 5.9 1.4 7.6 0.4 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DAP3 PF10236.9 gi|126465099|ref|YP_001040208.1| - 8 5.5 5.6 1.9 7.6 0.5 2.3 2 1 1 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 DUF5345 PF17280.2 gi|126465100|ref|YP_001040209.1| - 1.8 8.6 6.6 19 5.3 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5345) Radical_SAM PF04055.21 gi|126465101|ref|YP_001040210.1| - 4.2e-12 46.8 0.1 1.1e-11 45.4 0.0 1.6 1 1 1 2 2 2 1 Radical SAM superfamily DUF4119 PF13494.6 gi|126465101|ref|YP_001040210.1| - 0.045 13.9 0.1 0.14 12.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF4119) Radical_SAM PF04055.21 gi|126465102|ref|YP_001040211.1| - 9.4e-12 45.6 1.7 1.8e-09 38.2 0.0 2.6 3 1 0 3 3 3 2 Radical SAM superfamily CPSase_L_D3 PF02787.19 gi|126465102|ref|YP_001040211.1| - 0.11 12.9 0.0 0.25 11.7 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BPL_LplA_LipB PF03099.19 gi|126465103|ref|YP_001040212.1| - 9.3e-16 57.9 0.0 1.5e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|126465104|ref|YP_001040213.1| - 2.4e-07 30.6 0.9 2.8e-07 30.4 0.9 1.2 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus PhoU_div PF01865.16 gi|126465104|ref|YP_001040213.1| - 0.03 13.6 0.1 0.033 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF47 Fe_dep_repr_C PF02742.15 gi|126465106|ref|YP_001040215.1| - 1.9e-17 63.1 0.2 4e-17 62.1 0.2 1.6 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|126465106|ref|YP_001040215.1| - 3.7e-15 55.9 0.1 6.9e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|126465106|ref|YP_001040215.1| - 2.3e-07 30.6 0.0 4e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|126465106|ref|YP_001040215.1| - 1e-06 28.4 0.3 2.1e-06 27.4 0.0 1.7 2 1 0 2 2 1 1 LexA DNA binding domain HTH_24 PF13412.6 gi|126465106|ref|YP_001040215.1| - 5.3e-06 25.9 0.9 3.1e-05 23.4 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|126465106|ref|YP_001040215.1| - 5.7e-06 26.0 0.0 9.1e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|126465106|ref|YP_001040215.1| - 2.3e-05 24.3 0.0 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126465106|ref|YP_001040215.1| - 3.1e-05 23.7 0.0 7.4e-05 22.5 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|126465106|ref|YP_001040215.1| - 9.6e-05 22.3 0.0 0.00038 20.4 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|126465106|ref|YP_001040215.1| - 9.6e-05 22.2 0.6 0.00051 19.9 0.1 2.4 3 0 0 3 3 2 1 HTH domain DUF4423 PF14394.6 gi|126465106|ref|YP_001040215.1| - 0.00017 21.3 0.0 0.00037 20.3 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|126465106|ref|YP_001040215.1| - 0.00022 21.2 0.4 0.00073 19.6 0.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|126465106|ref|YP_001040215.1| - 0.00024 21.5 0.0 0.00041 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|126465106|ref|YP_001040215.1| - 0.0004 20.2 0.0 0.00081 19.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|126465106|ref|YP_001040215.1| - 0.00043 20.2 0.0 0.00095 19.1 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn helix HTH_45 PF14947.6 gi|126465106|ref|YP_001040215.1| - 0.00084 19.3 0.2 0.0014 18.5 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_28 PF13518.6 gi|126465106|ref|YP_001040215.1| - 0.0011 19.1 0.0 0.0025 17.9 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|126465106|ref|YP_001040215.1| - 0.0012 19.1 0.0 0.0064 16.8 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.21 gi|126465106|ref|YP_001040215.1| - 0.0014 18.2 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|126465106|ref|YP_001040215.1| - 0.0015 18.4 0.4 0.0058 16.5 0.5 1.9 2 1 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB IF2_N PF04760.15 gi|126465106|ref|YP_001040215.1| - 0.0019 18.0 0.1 0.029 14.2 0.0 2.4 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region Sigma70_r3 PF04539.16 gi|126465106|ref|YP_001040215.1| - 0.0029 17.7 0.1 0.0056 16.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70 region 3 DUF3791 PF12668.7 gi|126465106|ref|YP_001040215.1| - 0.0032 17.5 0.2 0.029 14.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3791) HTH_3 PF01381.22 gi|126465106|ref|YP_001040215.1| - 0.012 15.6 0.2 0.064 13.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_38 PF13936.6 gi|126465106|ref|YP_001040215.1| - 0.018 14.8 0.3 0.088 12.6 0.0 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|126465106|ref|YP_001040215.1| - 0.019 14.8 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.27 gi|126465106|ref|YP_001040215.1| - 0.023 14.7 0.0 0.063 13.2 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|126465106|ref|YP_001040215.1| - 0.031 14.1 0.0 0.092 12.6 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Mrr_N PF14338.6 gi|126465106|ref|YP_001040215.1| - 0.053 13.6 0.2 0.21 11.8 0.1 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain Topoisom_bac PF01131.20 gi|126465106|ref|YP_001040215.1| - 0.057 12.4 0.0 0.069 12.1 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase B-block_TFIIIC PF04182.12 gi|126465106|ref|YP_001040215.1| - 0.081 13.1 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.6 gi|126465106|ref|YP_001040215.1| - 0.13 12.1 0.1 0.65 9.9 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Thioredoxin_3 PF13192.6 gi|126465107|ref|YP_001040216.1| - 1e-13 51.1 0.2 9.4e-08 32.0 0.4 2.8 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|126465107|ref|YP_001040216.1| - 8e-06 26.3 2.7 0.36 11.3 0.0 3.3 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|126465107|ref|YP_001040216.1| - 0.00014 22.0 0.5 0.0083 16.3 0.1 3.0 3 0 0 3 3 3 1 Glutaredoxin Thioredoxin PF00085.20 gi|126465107|ref|YP_001040216.1| - 0.00088 19.2 0.1 0.2 11.7 0.0 2.4 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_9 PF14595.6 gi|126465107|ref|YP_001040216.1| - 0.0027 17.5 0.3 0.01 15.6 0.2 1.9 2 0 0 2 2 2 1 Thioredoxin TraF PF13728.6 gi|126465107|ref|YP_001040216.1| - 0.13 12.0 0.0 6.4 6.5 0.0 2.7 2 1 0 2 2 2 0 F plasmid transfer operon protein SelP_N PF04592.14 gi|126465107|ref|YP_001040216.1| - 0.49 9.8 4.9 0.75 9.2 4.9 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region HTH_24 PF13412.6 gi|126465108|ref|YP_001040217.1| - 4.6e-10 38.9 0.4 1.1e-09 37.7 0.1 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|126465108|ref|YP_001040217.1| - 5.9e-05 23.0 0.6 5.9e-05 23.0 0.6 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix MarR PF01047.22 gi|126465108|ref|YP_001040217.1| - 8.5e-05 22.4 0.0 0.00022 21.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|126465108|ref|YP_001040217.1| - 9.7e-05 22.0 0.0 0.00023 20.8 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|126465108|ref|YP_001040217.1| - 0.00033 20.9 0.0 0.0014 19.0 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|126465108|ref|YP_001040217.1| - 0.00058 19.6 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|126465108|ref|YP_001040217.1| - 0.00097 19.3 0.2 0.0041 17.3 0.0 2.2 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HSBP1 PF06825.12 gi|126465108|ref|YP_001040217.1| - 0.0019 18.0 1.2 0.0047 16.7 1.2 1.7 1 0 0 1 1 1 1 Heat shock factor binding protein 1 TrmB PF01978.19 gi|126465108|ref|YP_001040217.1| - 0.0028 17.5 0.1 0.013 15.3 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|126465108|ref|YP_001040217.1| - 0.0078 16.7 0.1 0.027 15.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|126465108|ref|YP_001040217.1| - 0.017 15.1 0.0 0.071 13.1 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fmp27_WPPW PF10359.9 gi|126465108|ref|YP_001040217.1| - 0.023 13.5 3.9 0.032 13.1 3.2 1.4 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain MarR_2 PF12802.7 gi|126465108|ref|YP_001040217.1| - 0.028 14.3 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|126465108|ref|YP_001040217.1| - 0.035 13.9 0.0 0.073 12.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain RuvB_C PF05491.13 gi|126465108|ref|YP_001040217.1| - 0.043 13.7 0.9 0.12 12.3 0.0 2.2 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain Med3 PF11593.8 gi|126465108|ref|YP_001040217.1| - 0.049 12.8 1.5 0.055 12.6 0.8 1.4 1 1 0 1 1 1 0 Mediator complex subunit 3 fungal HemN_C PF06969.16 gi|126465108|ref|YP_001040217.1| - 0.071 13.2 0.1 1.4 9.0 0.0 3.0 4 0 0 4 4 4 0 HemN C-terminal domain FIN1 PF17300.2 gi|126465108|ref|YP_001040217.1| - 0.3 10.6 11.1 0.14 11.6 6.1 2.1 2 0 0 2 2 2 0 Filaments in between nuclei protein-1 ABC_tran_CTD PF16326.5 gi|126465108|ref|YP_001040217.1| - 0.93 9.8 8.0 1.6 9.1 6.4 2.3 2 1 0 2 2 2 0 ABC transporter C-terminal domain DUF3484 PF11983.8 gi|126465108|ref|YP_001040217.1| - 3.1 9.0 6.2 0.77 10.9 2.3 1.9 2 0 0 2 2 2 0 Membrane-attachment and polymerisation-promoting switch THOC7 PF05615.13 gi|126465108|ref|YP_001040217.1| - 6.1 7.1 12.5 0.23 11.8 3.9 2.1 1 1 1 2 2 2 0 Tho complex subunit 7 TMPIT PF07851.13 gi|126465108|ref|YP_001040217.1| - 8.1 5.6 8.1 13 5.0 8.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein ParBc PF02195.18 gi|126465109|ref|YP_001040218.1| - 2.9e-12 46.7 0.1 1.5e-07 31.6 0.0 2.4 2 1 0 2 2 2 2 ParB-like nuclease domain ParBc_2 PF08857.11 gi|126465109|ref|YP_001040218.1| - 7e-06 26.2 0.0 0.0063 16.6 0.0 2.2 1 1 1 2 2 2 2 Putative ParB-like nuclease DUF1015 PF06245.11 gi|126465109|ref|YP_001040218.1| - 0.06 12.2 0.0 0.57 9.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1015) Wyosine_form PF08608.12 gi|126465110|ref|YP_001040219.1| - 4.3e-22 78.2 0.0 9.7e-22 77.1 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|126465110|ref|YP_001040219.1| - 3.2e-21 76.4 0.1 2.9e-20 73.3 0.1 2.5 1 1 0 1 1 1 1 Radical SAM superfamily HAD_2 PF13419.6 gi|126465111|ref|YP_001040220.1| - 1e-15 58.3 0.0 1.3e-15 58.0 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126465111|ref|YP_001040220.1| - 4.9e-08 32.9 0.0 1.1e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|126465111|ref|YP_001040220.1| - 2.2e-06 28.1 0.0 2.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126465111|ref|YP_001040220.1| - 0.064 13.7 0.2 0.11 12.9 0.2 1.5 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PBP PF01161.20 gi|126465112|ref|YP_001040221.1| - 3.5e-36 124.4 0.0 4.2e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein NTP_transferase PF00483.23 gi|126465113|ref|YP_001040222.1| - 1.1e-52 179.1 0.0 1.8e-52 178.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase PGM_PMM_I PF02878.16 gi|126465113|ref|YP_001040222.1| - 7.1e-24 84.1 0.1 9e-22 77.3 0.0 3.2 4 0 0 4 4 4 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Hexapep PF00132.24 gi|126465113|ref|YP_001040222.1| - 4.3e-13 48.4 17.1 1.7e-06 27.5 3.9 4.0 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) PGM_PMM_II PF02879.16 gi|126465113|ref|YP_001040222.1| - 6e-12 46.1 0.0 1.5e-11 44.8 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NTP_transf_3 PF12804.7 gi|126465113|ref|YP_001040222.1| - 2.2e-10 41.1 0.0 3.7e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain PGM_PMM_III PF02880.16 gi|126465113|ref|YP_001040222.1| - 3e-10 40.3 0.0 5.5e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Hexapep_2 PF14602.6 gi|126465113|ref|YP_001040222.1| - 0.0046 16.7 1.0 0.0046 16.7 1.0 3.5 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|126465113|ref|YP_001040222.1| - 0.019 14.7 0.0 0.04 13.7 0.0 1.5 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|126465113|ref|YP_001040222.1| - 0.071 12.0 0.1 4.6 6.1 0.2 2.2 2 0 0 2 2 2 0 L-fucokinase DUF4954 PF16314.5 gi|126465113|ref|YP_001040222.1| - 0.11 10.6 2.8 0.19 9.8 2.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) FMN_red PF03358.15 gi|126465114|ref|YP_001040223.1| - 2.1e-25 89.3 0.0 3.3e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|126465114|ref|YP_001040223.1| - 9.5e-12 45.0 0.0 2.1e-11 43.9 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin-like fold DUF357 PF04010.13 gi|126465115|ref|YP_001040224.1| - 2.1e-22 79.0 1.7 3.4e-22 78.3 1.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|126465115|ref|YP_001040224.1| - 6.2e-13 49.1 0.0 9.5e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF155 PF02582.14 gi|126465115|ref|YP_001040224.1| - 0.047 13.8 0.0 0.095 12.8 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 DUF2950 PF11453.8 gi|126465115|ref|YP_001040224.1| - 0.12 11.5 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2950) Orn_Arg_deC_N PF02784.16 gi|126465116|ref|YP_001040225.1| - 4.2e-23 82.0 0.0 7.7e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AsnC_trans_reg PF01037.21 gi|126465117|ref|YP_001040226.1| - 1.7e-10 40.7 0.7 1.9e-10 40.5 0.7 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|126465117|ref|YP_001040226.1| - 1.4e-05 25.1 0.1 1.8e-05 24.7 0.1 1.1 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.6 gi|126465117|ref|YP_001040226.1| - 0.018 15.6 1.0 0.49 11.0 0.1 2.2 2 0 0 2 2 2 0 ACT domain Radical_SAM PF04055.21 gi|126465118|ref|YP_001040227.1| - 9.1e-17 61.9 0.1 1.5e-15 58.0 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily TM_helix PF05552.12 gi|126465119|ref|YP_001040228.1| - 2.6e-17 62.5 17.0 4e-09 36.3 0.7 6.9 5 1 1 6 6 6 4 Conserved TM helix GvpG PF05120.12 gi|126465120|ref|YP_001040229.1| - 0.0023 17.9 1.7 0.0025 17.8 1.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein G Peptidase_Mx1 PF15890.5 gi|126465120|ref|YP_001040229.1| - 0.0049 16.3 0.0 0.0052 16.2 0.0 1.1 1 0 0 1 1 1 1 Putative zinc-binding metallo-peptidase Med9 PF07544.13 gi|126465120|ref|YP_001040229.1| - 0.0053 16.8 1.9 0.017 15.2 1.9 1.7 1 1 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 STAT_alpha PF01017.20 gi|126465120|ref|YP_001040229.1| - 0.0065 16.4 0.2 0.007 16.3 0.2 1.1 1 0 0 1 1 1 1 STAT protein, all-alpha domain TAFH PF07531.14 gi|126465120|ref|YP_001040229.1| - 0.013 15.6 0.2 0.02 15.0 0.2 1.4 1 1 1 2 2 2 0 NHR1 homology to TAF Exonuc_VII_S PF02609.16 gi|126465120|ref|YP_001040229.1| - 0.1 12.7 3.0 0.54 10.4 0.2 2.5 2 1 0 2 2 2 0 Exonuclease VII small subunit DUF1707 PF08044.11 gi|126465120|ref|YP_001040229.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1707) Baculo_PEP_C PF04513.12 gi|126465120|ref|YP_001040229.1| - 0.11 12.5 0.1 0.14 12.2 0.1 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DEAD PF00270.29 gi|126465121|ref|YP_001040230.1| - 1.9e-23 83.1 0.0 5.8e-23 81.6 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|126465121|ref|YP_001040230.1| - 3.4e-12 46.8 0.2 5.1e-11 43.0 0.1 3.1 4 0 0 4 4 4 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|126465121|ref|YP_001040230.1| - 9.4e-10 38.8 0.0 2.1e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|126465121|ref|YP_001040230.1| - 3.6e-06 27.3 0.8 3.7e-05 24.0 0.2 2.9 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|126465121|ref|YP_001040230.1| - 0.0021 17.8 0.0 0.017 14.9 0.0 2.7 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.23 gi|126465121|ref|YP_001040230.1| - 0.017 13.9 0.0 0.03 13.1 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF4332 PF14229.6 gi|126465121|ref|YP_001040230.1| - 0.15 12.3 0.0 0.48 10.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) PBP_like PF12727.7 gi|126465122|ref|YP_001040231.1| - 6.1e-61 204.9 0.0 9.9e-61 204.2 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|126465122|ref|YP_001040231.1| - 1.3e-41 141.9 0.0 3.2e-41 140.7 0.0 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126465122|ref|YP_001040231.1| - 5.3e-24 84.5 0.1 1.6e-23 83.0 0.0 1.9 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|126465122|ref|YP_001040231.1| - 2.7e-08 33.9 0.2 1.2e-07 31.8 0.0 2.3 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|126465122|ref|YP_001040231.1| - 2.4e-06 27.5 0.0 5.1e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|126465122|ref|YP_001040231.1| - 0.086 12.4 0.0 0.2 11.2 0.0 1.5 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Vma12 PF11712.8 gi|126465123|ref|YP_001040232.1| - 0.076 13.1 0.4 0.14 12.2 0.4 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase RseC_MucC PF04246.12 gi|126465123|ref|YP_001040232.1| - 3.9 7.4 5.8 1 9.3 1.3 2.0 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF2258 PF10015.9 gi|126465125|ref|YP_001040234.1| - 4.3e-28 97.3 2.4 4.3e-28 97.3 2.4 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) CN_hydrolase PF00795.22 gi|126465126|ref|YP_001040235.1| - 4e-27 95.2 0.0 5e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF2770 PF10968.8 gi|126465127|ref|YP_001040236.1| - 0.092 12.7 5.2 0.37 10.8 5.2 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2770) Amidohydro_1 PF01979.20 gi|126465128|ref|YP_001040237.1| - 1e-29 104.0 0.0 1.2e-29 103.7 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126465128|ref|YP_001040237.1| - 1.7e-08 34.4 0.0 6.1e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family ATLF PF07737.11 gi|126465128|ref|YP_001040237.1| - 0.051 12.9 0.0 0.098 11.9 0.0 1.5 1 0 0 1 1 1 0 Anthrax toxin lethal factor, N- and C-terminal domain DUF43 PF01861.16 gi|126465129|ref|YP_001040238.1| - 0.025 13.8 1.0 0.031 13.5 1.0 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain GHMP_kinases_N PF00288.26 gi|126465130|ref|YP_001040239.1| - 4.8e-20 71.6 0.1 9.7e-20 70.6 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|126465130|ref|YP_001040239.1| - 5.9e-12 45.8 0.1 1.3e-11 44.7 0.1 1.6 1 1 0 1 1 1 1 GHMP kinases C terminal MgtE PF01769.16 gi|126465131|ref|YP_001040240.1| - 4.2e-25 88.5 27.7 1.9e-14 54.1 6.2 3.7 4 0 0 4 4 4 2 Divalent cation transporter ParA PF10609.9 gi|126465132|ref|YP_001040241.1| - 5e-84 281.6 0.0 5.8e-84 281.4 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|126465132|ref|YP_001040241.1| - 1.9e-15 57.1 0.0 1.1e-14 54.6 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|126465132|ref|YP_001040241.1| - 8.6e-09 35.5 0.4 1.7e-07 31.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|126465132|ref|YP_001040241.1| - 5.5e-07 29.1 0.4 2.9e-06 26.7 0.2 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|126465132|ref|YP_001040241.1| - 3.2e-06 26.8 0.1 0.0085 15.6 0.0 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|126465132|ref|YP_001040241.1| - 0.00016 21.6 0.3 0.23 11.3 0.1 2.2 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|126465132|ref|YP_001040241.1| - 0.00024 20.5 0.0 0.00072 18.9 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|126465132|ref|YP_001040241.1| - 0.00047 19.7 0.2 0.01 15.3 0.1 2.6 3 0 0 3 3 3 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|126465132|ref|YP_001040241.1| - 0.0009 18.6 0.1 0.0015 17.9 0.1 1.2 1 0 0 1 1 1 1 VirC1 protein AAA_16 PF13191.6 gi|126465132|ref|YP_001040241.1| - 0.0015 18.9 0.0 0.0039 17.6 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|126465132|ref|YP_001040241.1| - 0.0066 16.2 0.1 0.016 15.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|126465132|ref|YP_001040241.1| - 0.0078 16.0 0.0 0.026 14.3 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein ResIII PF04851.15 gi|126465132|ref|YP_001040241.1| - 0.013 15.5 0.0 0.068 13.2 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|126465132|ref|YP_001040241.1| - 0.021 14.4 0.1 0.042 13.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|126465132|ref|YP_001040241.1| - 0.025 13.8 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin PIF1 PF05970.14 gi|126465132|ref|YP_001040241.1| - 0.035 13.3 0.0 0.05 12.8 0.0 1.1 1 0 0 1 1 1 0 PIF1-like helicase SRP54 PF00448.22 gi|126465132|ref|YP_001040241.1| - 0.035 13.7 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|126465132|ref|YP_001040241.1| - 0.11 12.0 0.1 0.48 9.9 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_22 PF13401.6 gi|126465132|ref|YP_001040241.1| - 0.13 12.6 0.0 0.66 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|126465132|ref|YP_001040241.1| - 0.15 11.8 0.0 0.33 10.7 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NB-ARC PF00931.22 gi|126465132|ref|YP_001040241.1| - 0.16 11.2 0.1 0.26 10.4 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain RuvB_N PF05496.12 gi|126465132|ref|YP_001040241.1| - 0.16 11.7 0.1 1.4 8.7 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MeaB PF03308.16 gi|126465132|ref|YP_001040241.1| - 0.16 10.9 0.0 0.29 10.1 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|126465132|ref|YP_001040241.1| - 0.17 11.7 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase TF_Zn_Ribbon PF08271.12 gi|126465132|ref|YP_001040241.1| - 0.21 11.1 0.1 0.36 10.4 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding LOH1CR12 PF10158.9 gi|126465134|ref|YP_001040243.1| - 0.00014 21.9 0.6 0.00035 20.6 0.5 1.7 1 1 1 2 2 2 1 Tumour suppressor protein HU-CCDC81_bac_2 PF18175.1 gi|126465134|ref|YP_001040243.1| - 0.0069 16.2 0.4 0.039 13.8 0.0 2.3 2 0 0 2 2 2 1 CCDC81-like prokaryotic HU domain 2 Occludin_ELL PF07303.13 gi|126465134|ref|YP_001040243.1| - 0.099 13.4 2.1 4.9 7.9 0.8 2.8 2 1 1 3 3 3 0 Occludin homology domain STT3 PF02516.14 gi|126465135|ref|YP_001040244.1| - 2.6e-25 89.3 35.8 4.5e-25 88.5 35.8 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Dpy19 PF10034.9 gi|126465135|ref|YP_001040244.1| - 4.5 5.4 11.5 7.4 4.6 11.5 1.2 1 0 0 1 1 1 0 Q-cell neuroblast polarisation OTCace PF00185.24 gi|126465136|ref|YP_001040245.1| - 6.9e-56 188.7 0.0 9.8e-56 188.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|126465136|ref|YP_001040245.1| - 1.8e-49 167.5 0.0 3.7e-49 166.5 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Glyco_hydro_101 PF12905.7 gi|126465136|ref|YP_001040245.1| - 0.059 12.8 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase MFS_1 PF07690.16 gi|126465137|ref|YP_001040246.1| - 1e-29 103.6 38.4 5.4e-17 61.7 16.7 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4407 PF14362.6 gi|126465138|ref|YP_001040247.1| - 0.01 15.2 2.3 0.014 14.7 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Mst1_SARAH PF11629.8 gi|126465138|ref|YP_001040247.1| - 0.019 15.1 8.6 2.7 8.1 1.0 4.1 3 1 0 3 3 3 0 C terminal SARAH domain of Mst1 Baculo_PEP_C PF04513.12 gi|126465138|ref|YP_001040247.1| - 0.027 14.5 12.3 0.11 12.6 0.4 3.5 3 1 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus FokI_C PF02980.16 gi|126465138|ref|YP_001040247.1| - 0.032 14.3 1.4 0.086 12.9 0.2 2.3 2 0 0 2 2 2 0 Restriction endonuclease FokI, catalytic domain XG_FTase PF03254.13 gi|126465138|ref|YP_001040247.1| - 0.099 11.2 0.3 0.15 10.7 0.3 1.2 1 0 0 1 1 1 0 Xyloglucan fucosyltransferase APG17 PF04108.12 gi|126465138|ref|YP_001040247.1| - 0.11 11.6 13.4 1.8 7.6 0.2 2.4 2 1 0 2 2 2 0 Autophagy protein Apg17 HEAT_UF PF18817.1 gi|126465138|ref|YP_001040247.1| - 0.13 12.6 0.7 0.97 9.7 0.1 2.8 2 0 0 2 2 2 0 Repeat of uncharacterized protein PH0542 ApoLp-III PF07464.11 gi|126465138|ref|YP_001040247.1| - 1.5 8.9 6.5 4.1 7.5 0.4 2.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) FliD_C PF07195.12 gi|126465138|ref|YP_001040247.1| - 1.6 8.1 8.6 14 5.0 8.7 2.3 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus ING PF12998.7 gi|126465138|ref|YP_001040247.1| - 1.8 9.2 23.3 2.5 8.7 3.2 4.1 2 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding OTCace PF00185.24 gi|126465139|ref|YP_001040248.1| - 8.6e-38 129.9 0.0 1.3e-37 129.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|126465139|ref|YP_001040248.1| - 1.8e-33 115.7 0.0 2.6e-33 115.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RuvA_C PF07499.13 gi|126465139|ref|YP_001040248.1| - 0.11 13.0 0.3 0.25 11.9 0.3 1.6 1 0 0 1 1 1 0 RuvA, C-terminal domain Cas_Csa5 PF09702.10 gi|126465140|ref|YP_001040249.1| - 0.093 13.0 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) tRNA-synt_His PF13393.6 gi|126465142|ref|YP_001040251.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Histidyl-tRNA synthetase DUF4441 PF14536.6 gi|126465142|ref|YP_001040251.1| - 3.2 8.0 16.3 0.062 13.5 4.3 3.4 2 2 0 3 3 3 0 Domain of unknown function (DUF4441) Lactamase_B PF00753.27 gi|126465143|ref|YP_001040252.1| - 1.8e-05 24.9 0.1 4e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126465143|ref|YP_001040252.1| - 4.3e-05 23.1 0.0 6.6e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|126465143|ref|YP_001040252.1| - 7.5e-05 22.7 0.0 0.00012 22.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DHH PF01368.20 gi|126465143|ref|YP_001040252.1| - 1.1 9.5 3.4 15 5.9 3.3 2.2 1 1 1 2 2 2 0 DHH family Acetyltransf_CG PF14542.6 gi|126465144|ref|YP_001040253.1| - 4e-23 81.3 0.0 6.3e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|126465144|ref|YP_001040253.1| - 7.6e-07 29.4 0.1 1.4e-06 28.5 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126465144|ref|YP_001040253.1| - 2.7e-05 24.5 0.0 3.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126465144|ref|YP_001040253.1| - 5.5e-05 23.1 0.0 0.00011 22.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|126465144|ref|YP_001040253.1| - 0.00015 21.3 0.7 0.00025 20.6 0.3 1.6 1 1 1 2 2 2 1 Putative acetyl-transferase Acetyltransf_9 PF13527.7 gi|126465144|ref|YP_001040253.1| - 0.00037 20.6 0.1 0.0014 18.7 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|126465144|ref|YP_001040253.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Radical_SAM PF04055.21 gi|126465145|ref|YP_001040254.1| - 3e-19 70.0 0.0 5.3e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465145|ref|YP_001040254.1| - 1.2e-10 41.8 0.0 1.7e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126465145|ref|YP_001040254.1| - 2.4e-07 30.9 0.0 4.3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Tnp_22_dsRBD PF17490.2 gi|126465145|ref|YP_001040254.1| - 0.095 12.7 0.1 12 6.0 0.1 2.4 2 0 0 2 2 2 0 L1 transposable element dsRBD-like domain AA_kinase PF00696.28 gi|126465147|ref|YP_001040256.1| - 1.3e-30 106.8 0.0 2.9e-30 105.7 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family Amidohydro_1 PF01979.20 gi|126465148|ref|YP_001040257.1| - 4.1e-56 190.8 0.2 4.9e-56 190.5 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126465148|ref|YP_001040257.1| - 2.7e-20 73.3 0.0 2.1e-13 50.6 0.0 2.3 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|126465148|ref|YP_001040257.1| - 0.1 11.9 0.3 1.6 8.0 0.3 2.3 1 1 1 2 2 2 0 TatD related DNase Cren7 PF11520.8 gi|126465149|ref|YP_001040258.1| - 2.2e-35 120.3 2.1 2.5e-35 120.2 2.1 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF4585 PF15232.6 gi|126465149|ref|YP_001040258.1| - 0.042 13.9 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4585) DHO_dh PF01180.21 gi|126465150|ref|YP_001040259.1| - 2.3e-35 122.2 0.1 8.2e-30 104.0 0.1 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4 PF00037.27 gi|126465150|ref|YP_001040259.1| - 1e-13 50.4 19.0 6.8e-08 32.0 1.0 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126465150|ref|YP_001040259.1| - 8.7e-13 48.2 8.8 1.9e-12 47.1 7.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126465150|ref|YP_001040259.1| - 6.8e-12 45.8 10.5 1.5e-11 44.6 10.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126465150|ref|YP_001040259.1| - 1.9e-10 40.2 11.7 4.4e-05 23.3 2.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126465150|ref|YP_001040259.1| - 1.6e-09 37.4 17.7 2.5e-05 24.2 1.4 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|126465150|ref|YP_001040259.1| - 2.8e-09 37.0 8.9 5.2e-09 36.1 8.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465150|ref|YP_001040259.1| - 1.3e-07 32.5 4.5 0.00067 20.5 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|126465150|ref|YP_001040259.1| - 2e-07 31.0 9.9 4.3e-07 29.9 8.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain NMO PF03060.15 gi|126465150|ref|YP_001040259.1| - 1.6e-06 27.7 0.8 2.8e-06 27.0 0.8 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_8 PF13183.6 gi|126465150|ref|YP_001040259.1| - 0.00018 21.9 10.8 0.0019 18.6 10.4 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126465150|ref|YP_001040259.1| - 0.00027 21.7 4.6 0.34 11.8 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126465150|ref|YP_001040259.1| - 0.00053 20.5 10.9 0.022 15.3 10.9 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain His_biosynth PF00977.21 gi|126465150|ref|YP_001040259.1| - 0.00056 19.5 0.3 0.0023 17.4 0.0 2.1 3 0 0 3 3 3 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|126465150|ref|YP_001040259.1| - 0.0015 17.7 3.2 0.0047 16.0 2.6 2.2 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_15 PF13459.6 gi|126465150|ref|YP_001040259.1| - 0.0053 17.5 6.1 1 10.1 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|126465150|ref|YP_001040259.1| - 0.006 17.0 17.9 0.038 14.5 2.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|126465150|ref|YP_001040259.1| - 0.0066 17.3 20.6 0.055 14.4 4.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126465150|ref|YP_001040259.1| - 0.012 16.2 8.2 0.57 10.8 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I IMPDH PF00478.25 gi|126465150|ref|YP_001040259.1| - 0.026 13.5 0.5 0.026 13.5 0.5 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|126465150|ref|YP_001040259.1| - 0.088 12.2 0.3 0.35 10.3 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.12 gi|126465150|ref|YP_001040259.1| - 0.097 11.8 0.7 0.41 9.8 0.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF561) PGK PF00162.19 gi|126465152|ref|YP_001040261.1| - 5.2e-100 335.0 0.0 5.9e-100 334.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|126465153|ref|YP_001040262.1| - 3.3e-27 95.0 0.5 5e-27 94.4 0.5 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|126465153|ref|YP_001040262.1| - 5.8e-09 36.1 0.0 1.4e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|126465153|ref|YP_001040262.1| - 1.6e-05 25.2 0.1 5.5e-05 23.4 0.1 2.1 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|126465153|ref|YP_001040262.1| - 0.0009 20.1 0.0 0.012 16.4 0.0 2.6 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|126465153|ref|YP_001040262.1| - 0.05 14.3 0.4 0.05 14.3 0.4 2.4 2 1 0 2 2 2 0 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|126465153|ref|YP_001040262.1| - 0.068 12.5 0.3 0.5 9.7 0.2 2.1 1 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|126465153|ref|YP_001040262.1| - 0.07 13.8 1.9 8.8 7.1 0.2 3.0 2 1 1 3 3 3 0 PglD N-terminal domain COX2 PF00116.20 gi|126465153|ref|YP_001040262.1| - 0.074 12.9 0.0 18 5.2 0.0 2.6 2 1 0 2 2 2 0 Cytochrome C oxidase subunit II, periplasmic domain Semialdhyde_dh PF01118.24 gi|126465153|ref|YP_001040262.1| - 0.12 12.8 0.0 0.36 11.3 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Usp PF00582.26 gi|126465154|ref|YP_001040263.1| - 1.6e-22 80.5 0.1 1.1e-21 77.8 0.1 1.9 1 1 0 1 1 1 1 Universal stress protein family Polysacc_deac_2 PF04748.13 gi|126465154|ref|YP_001040263.1| - 0.069 12.3 0.0 0.094 11.9 0.0 1.2 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase NAD_binding_2 PF03446.15 gi|126465155|ref|YP_001040264.1| - 4.6e-24 85.4 0.0 6.6e-24 84.9 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|126465155|ref|YP_001040264.1| - 9.4e-08 32.2 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|126465155|ref|YP_001040264.1| - 1.9e-07 31.5 0.0 5.3e-07 30.1 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|126465155|ref|YP_001040264.1| - 2.4e-07 30.3 0.0 4.3e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|126465155|ref|YP_001040264.1| - 8.1e-05 22.6 0.1 0.00027 20.9 0.0 1.8 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|126465155|ref|YP_001040264.1| - 0.00057 19.5 0.0 0.00095 18.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|126465155|ref|YP_001040264.1| - 0.0034 17.0 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_11 PF14833.6 gi|126465155|ref|YP_001040264.1| - 0.0048 17.1 0.0 0.013 15.7 0.0 1.7 1 1 1 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FAD_binding_3 PF01494.19 gi|126465155|ref|YP_001040264.1| - 0.0089 15.3 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|126465155|ref|YP_001040264.1| - 0.012 15.9 0.1 0.023 14.9 0.1 1.4 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.21 gi|126465155|ref|YP_001040264.1| - 0.013 15.0 0.0 0.023 14.1 0.0 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_Gly3P_dh_N PF01210.23 gi|126465155|ref|YP_001040264.1| - 0.017 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.22 gi|126465155|ref|YP_001040264.1| - 0.017 16.0 0.0 0.16 12.8 0.0 2.1 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.14 gi|126465155|ref|YP_001040264.1| - 0.027 14.1 0.1 0.12 11.9 0.1 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|126465155|ref|YP_001040264.1| - 0.03 14.6 0.0 0.27 11.5 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|126465155|ref|YP_001040264.1| - 0.064 12.7 0.1 0.15 11.5 0.0 1.6 2 0 0 2 2 2 0 short chain dehydrogenase Cupin_2 PF07883.11 gi|126465156|ref|YP_001040265.1| - 1.3e-18 66.4 0.7 1.8e-18 66.0 0.7 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|126465156|ref|YP_001040265.1| - 3.8e-08 33.3 0.1 4.5e-08 33.1 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|126465156|ref|YP_001040265.1| - 2.2e-07 30.9 0.7 3e-07 30.4 0.7 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|126465156|ref|YP_001040265.1| - 6.5e-06 26.0 0.0 9.8e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|126465156|ref|YP_001040265.1| - 0.00081 19.0 0.0 0.0015 18.2 0.0 1.3 1 1 0 1 1 1 1 Cupin Asp_Arg_Hydrox PF05118.15 gi|126465156|ref|YP_001040265.1| - 0.0033 17.3 0.0 0.012 15.5 0.0 1.8 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase ARD PF03079.14 gi|126465156|ref|YP_001040265.1| - 0.097 12.8 1.0 0.16 12.2 0.6 1.5 1 1 1 2 2 2 0 ARD/ARD' family Peptidase_M6 PF05547.11 gi|126465157|ref|YP_001040266.1| - 0.043 12.2 0.1 0.047 12.0 0.1 1.0 1 0 0 1 1 1 0 Immune inhibitor A peptidase M6 Phosphorylase PF00343.20 gi|126465158|ref|YP_001040267.1| - 9.4e-14 50.6 0.2 2.6e-11 42.6 0.0 2.9 2 1 1 3 3 3 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|126465158|ref|YP_001040267.1| - 2.7e-08 33.5 0.0 5.8e-08 32.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126465158|ref|YP_001040267.1| - 7.8e-06 26.4 0.0 1.4e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126465158|ref|YP_001040267.1| - 0.1 12.6 0.3 0.24 11.4 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Isochorismatase PF00857.20 gi|126465159|ref|YP_001040268.1| - 3.1e-29 102.4 0.0 4.7e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 Isochorismatase family DUF2150 PF09920.9 gi|126465159|ref|YP_001040268.1| - 0.038 14.0 0.0 0.12 12.3 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) UPF0051 PF01458.17 gi|126465160|ref|YP_001040269.1| - 3.4e-44 151.2 0.5 4.3e-44 150.8 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) CBM_6 PF03422.15 gi|126465160|ref|YP_001040269.1| - 0.081 13.2 0.3 6.8 7.0 0.0 2.4 1 1 1 2 2 2 0 Carbohydrate binding module (family 6) Peptidase_M28 PF04389.17 gi|126465161|ref|YP_001040270.1| - 2.9e-09 36.9 0.0 2.8e-05 23.9 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 DUF4910 PF16254.5 gi|126465161|ref|YP_001040270.1| - 4.3e-06 25.8 0.1 0.0008 18.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4910) Tic110 PF16940.5 gi|126465161|ref|YP_001040270.1| - 0.22 9.9 0.0 0.35 9.3 0.0 1.2 1 0 0 1 1 1 0 Chloroplast envelope transporter tRNA_synthFbeta PF17759.1 gi|126465162|ref|YP_001040271.1| - 1.6e-35 122.5 0.0 1.1e-34 119.8 0.0 2.1 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|126465162|ref|YP_001040271.1| - 2.7e-20 72.4 2.1 4.1e-16 59.0 0.5 2.9 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|126465162|ref|YP_001040271.1| - 1.5e-15 57.3 0.6 4.8e-15 55.7 0.1 1.9 2 0 0 2 2 2 1 B3/4 domain PhetRS_B1 PF18262.1 gi|126465162|ref|YP_001040271.1| - 6.4e-06 26.3 0.1 0.0013 19.0 0.0 3.2 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain Na_H_Exchanger PF00999.21 gi|126465163|ref|YP_001040272.1| - 3.4e-48 164.4 41.2 3.8e-48 164.2 41.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family PQQ_2 PF13360.6 gi|126465165|ref|YP_001040274.1| - 0.021 14.4 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 PQQ-like domain Radical_SAM PF04055.21 gi|126465166|ref|YP_001040275.1| - 5.3e-11 43.2 0.0 8.2e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465166|ref|YP_001040275.1| - 1e-06 29.1 0.0 5.2e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126465166|ref|YP_001040275.1| - 3e-05 24.2 0.3 0.00022 21.3 0.1 2.1 1 1 0 2 2 2 1 4Fe-4S single cluster domain Methyltr_RsmB-F PF01189.17 gi|126465167|ref|YP_001040276.1| - 4.2e-34 117.9 0.0 6e-34 117.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MAGE PF01454.19 gi|126465167|ref|YP_001040276.1| - 0.034 13.8 0.2 3.4 7.3 0.2 2.2 2 0 0 2 2 2 0 MAGE family STN1_2 PF09170.10 gi|126465167|ref|YP_001040276.1| - 0.094 12.9 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 PIN_5 PF08745.11 gi|126465168|ref|YP_001040277.1| - 1.5e-65 220.5 0.4 1.7e-65 220.4 0.4 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Imm49 PF15575.6 gi|126465168|ref|YP_001040277.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 49 tRNA-synt_2d PF01409.20 gi|126465169|ref|YP_001040278.1| - 2.7e-77 259.6 0.0 3.7e-77 259.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|126465169|ref|YP_001040278.1| - 1.2e-06 28.1 0.0 0.00059 19.3 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|126465169|ref|YP_001040278.1| - 2.2e-06 27.0 0.6 0.021 13.9 0.1 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_DeoR PF08220.12 gi|126465169|ref|YP_001040278.1| - 3e-06 26.9 0.7 7.5e-06 25.6 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|126465169|ref|YP_001040278.1| - 8.3e-05 22.4 0.8 0.0022 17.9 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|126465169|ref|YP_001040278.1| - 0.00062 19.6 0.8 0.0033 17.3 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|126465169|ref|YP_001040278.1| - 0.00094 19.2 0.3 0.00094 19.2 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|126465169|ref|YP_001040278.1| - 0.0052 16.6 0.2 0.48 10.4 0.2 3.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|126465169|ref|YP_001040278.1| - 0.013 15.5 5.3 0.16 12.0 0.0 3.3 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|126465169|ref|YP_001040278.1| - 0.074 13.2 0.3 0.16 12.1 0.3 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_11 PF08279.12 gi|126465169|ref|YP_001040278.1| - 0.087 12.8 0.3 0.087 12.8 0.3 2.1 2 0 0 2 2 2 0 HTH domain DAO PF01266.24 gi|126465170|ref|YP_001040279.1| - 9.7e-64 216.2 0.0 1.1e-63 215.9 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|126465170|ref|YP_001040279.1| - 4.9e-10 39.6 0.6 1.3e-09 38.3 0.6 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|126465170|ref|YP_001040279.1| - 8e-09 35.1 0.2 0.0009 18.6 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|126465170|ref|YP_001040279.1| - 1.4e-06 28.5 0.0 3e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|126465170|ref|YP_001040279.1| - 6.5e-06 26.6 6.7 0.0043 17.6 0.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|126465170|ref|YP_001040279.1| - 1.2e-05 25.5 3.1 0.00023 21.4 0.1 2.8 3 0 0 3 3 2 1 TrkA-N domain Thi4 PF01946.17 gi|126465170|ref|YP_001040279.1| - 3.8e-05 23.0 2.7 0.00046 19.5 0.1 2.5 2 0 0 2 2 2 1 Thi4 family Sacchrp_dh_NADP PF03435.18 gi|126465170|ref|YP_001040279.1| - 7.6e-05 23.0 0.3 0.0025 18.1 0.0 2.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Pyr_redox_3 PF13738.6 gi|126465170|ref|YP_001040279.1| - 8.3e-05 22.0 2.3 0.13 11.5 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|126465170|ref|YP_001040279.1| - 0.0007 19.6 1.7 0.066 13.2 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|126465170|ref|YP_001040279.1| - 0.00085 18.5 0.2 0.029 13.4 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|126465170|ref|YP_001040279.1| - 0.00094 18.5 0.2 0.0077 15.5 0.2 2.3 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|126465170|ref|YP_001040279.1| - 0.0089 14.9 0.9 1.9 7.2 0.1 2.7 3 0 0 3 3 3 1 Tryptophan halogenase Phage_cap_E PF03864.15 gi|126465170|ref|YP_001040279.1| - 0.0096 15.1 0.0 0.013 14.7 0.0 1.1 1 0 0 1 1 1 1 Phage major capsid protein E UPF0180 PF03698.13 gi|126465170|ref|YP_001040279.1| - 0.011 15.9 4.1 0.029 14.5 0.9 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) K_oxygenase PF13434.6 gi|126465170|ref|YP_001040279.1| - 0.011 14.9 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|126465170|ref|YP_001040279.1| - 0.017 14.2 0.0 0.062 12.4 0.0 1.8 1 1 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|126465170|ref|YP_001040279.1| - 0.024 13.4 2.7 0.2 10.3 0.0 2.5 3 0 0 3 3 3 0 HI0933-like protein 3HCDH_N PF02737.18 gi|126465170|ref|YP_001040279.1| - 0.059 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|126465170|ref|YP_001040279.1| - 0.067 13.6 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|126465170|ref|YP_001040279.1| - 0.087 12.1 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain DUF1188 PF06690.11 gi|126465170|ref|YP_001040279.1| - 0.16 11.5 1.5 0.34 10.4 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1188) Pyr_redox_2 PF07992.14 gi|126465171|ref|YP_001040280.1| - 4e-28 98.5 0.1 7.4e-28 97.6 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126465171|ref|YP_001040280.1| - 8.4e-14 51.5 2.1 1.5e-06 27.7 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|126465171|ref|YP_001040280.1| - 2.5e-11 43.3 5.9 1.8e-05 24.0 0.2 4.2 2 2 2 4 4 4 3 FAD binding domain NAD_binding_8 PF13450.6 gi|126465171|ref|YP_001040280.1| - 6.8e-09 35.8 0.3 9.2e-07 29.0 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|126465171|ref|YP_001040280.1| - 3.8e-07 29.7 2.0 0.00011 21.6 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.27 gi|126465171|ref|YP_001040280.1| - 4.6e-07 30.3 3.7 0.024 15.2 0.0 3.9 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|126465171|ref|YP_001040280.1| - 3.1e-06 26.8 0.0 9.3e-06 25.2 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|126465171|ref|YP_001040280.1| - 4.1e-06 25.8 3.6 9.6e-05 21.2 0.1 3.9 4 1 1 5 5 5 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|126465171|ref|YP_001040280.1| - 2.5e-05 24.7 0.1 0.014 15.8 0.1 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.24 gi|126465171|ref|YP_001040280.1| - 3e-05 23.8 8.1 0.0011 18.6 0.4 3.5 2 2 2 4 4 4 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|126465171|ref|YP_001040280.1| - 7.1e-05 22.3 0.1 0.0004 19.8 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|126465171|ref|YP_001040280.1| - 0.00014 21.1 1.6 0.024 13.7 0.0 3.3 3 1 0 4 4 4 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|126465171|ref|YP_001040280.1| - 0.00027 20.2 0.6 0.0061 15.8 0.0 2.7 3 0 0 3 3 3 1 Thi4 family Lycopene_cycl PF05834.12 gi|126465171|ref|YP_001040280.1| - 0.013 14.5 3.0 0.085 11.9 0.3 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein ELFV_dehydrog PF00208.21 gi|126465171|ref|YP_001040280.1| - 0.018 14.8 0.1 0.036 13.8 0.1 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.20 gi|126465171|ref|YP_001040280.1| - 0.073 13.1 0.4 2 8.5 0.3 2.4 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|126465171|ref|YP_001040280.1| - 0.086 12.4 0.8 0.87 9.1 0.6 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|126465171|ref|YP_001040280.1| - 0.18 12.4 2.3 1.4 9.5 0.3 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF1667 PF07892.11 gi|126465172|ref|YP_001040281.1| - 7.7e-32 109.2 2.0 1e-31 108.8 2.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) Molybdop_Fe4S4 PF04879.16 gi|126465172|ref|YP_001040281.1| - 0.0004 20.3 2.0 0.0011 19.0 2.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain GDPD PF03009.17 gi|126465173|ref|YP_001040282.1| - 3.2e-23 82.8 0.0 2.5e-21 76.6 0.0 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|126465173|ref|YP_001040282.1| - 0.05 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain Peptidase_S15 PF02129.18 gi|126465174|ref|YP_001040283.1| - 1.6e-21 77.1 0.1 9.3e-15 54.9 0.1 2.1 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|126465174|ref|YP_001040283.1| - 4e-19 68.8 0.0 1.8e-12 47.0 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|126465174|ref|YP_001040283.1| - 1.7e-15 57.1 0.0 2.4e-14 53.3 0.0 2.1 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|126465174|ref|YP_001040283.1| - 7.5e-13 48.7 0.0 1.7e-09 37.7 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|126465174|ref|YP_001040283.1| - 1.1e-11 44.8 0.2 7.2e-10 38.8 0.2 2.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|126465174|ref|YP_001040283.1| - 2.3e-11 44.7 0.0 3e-11 44.3 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|126465174|ref|YP_001040283.1| - 2.8e-09 37.0 0.0 2.4e-08 33.9 0.0 2.1 1 1 0 2 2 2 1 Serine hydrolase (FSH1) BAAT_C PF08840.11 gi|126465174|ref|YP_001040283.1| - 6.2e-09 36.1 0.1 4e-08 33.4 0.1 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.12 gi|126465174|ref|YP_001040283.1| - 2e-07 30.0 0.3 1.7e-05 23.7 0.1 2.7 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.16 gi|126465174|ref|YP_001040283.1| - 0.00015 21.7 0.1 0.4 10.4 0.0 2.8 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Acyl_transf_2 PF02273.15 gi|126465174|ref|YP_001040283.1| - 0.00016 21.0 0.3 0.0015 17.8 0.3 2.2 1 1 0 1 1 1 1 Acyl transferase DUF676 PF05057.14 gi|126465174|ref|YP_001040283.1| - 0.00023 20.7 0.0 0.00033 20.2 0.0 1.3 1 1 0 1 1 1 1 Putative serine esterase (DUF676) PhoPQ_related PF10142.9 gi|126465174|ref|YP_001040283.1| - 0.0012 17.6 0.1 0.0026 16.5 0.0 1.5 2 0 0 2 2 2 1 PhoPQ-activated pathogenicity-related protein DUF829 PF05705.14 gi|126465174|ref|YP_001040283.1| - 0.0027 17.7 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) Esterase PF00756.20 gi|126465174|ref|YP_001040283.1| - 0.0066 16.1 0.0 0.0085 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative esterase PGAP1 PF07819.13 gi|126465174|ref|YP_001040283.1| - 0.0078 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 PGAP1-like protein Abhydrolase_7 PF12715.7 gi|126465174|ref|YP_001040283.1| - 0.0099 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Abhydrolase family Lipase PF00151.19 gi|126465174|ref|YP_001040283.1| - 0.026 13.9 0.0 0.038 13.3 0.0 1.1 1 0 0 1 1 1 0 Lipase Abhydrolase_5 PF12695.7 gi|126465174|ref|YP_001040283.1| - 0.033 14.0 0.1 5.2 6.8 0.0 2.6 3 0 0 3 3 3 0 Alpha/beta hydrolase family LIP PF03583.14 gi|126465174|ref|YP_001040283.1| - 0.038 13.3 0.1 1.7 7.9 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase HCBP_related PF06594.11 gi|126465174|ref|YP_001040283.1| - 0.12 12.3 0.2 0.4 10.7 0.2 2.0 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain Abhydro_lipase PF04083.16 gi|126465174|ref|YP_001040283.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Abhydrolase_3 PF07859.13 gi|126465174|ref|YP_001040283.1| - 0.22 11.4 0.0 0.55 10.0 0.0 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold Sigma_reg_N PF13800.6 gi|126465174|ref|YP_001040283.1| - 0.5 10.7 3.4 1.6 9.1 3.4 1.8 1 0 0 1 1 1 0 Sigma factor regulator N-terminal MFS_1 PF07690.16 gi|126465175|ref|YP_001040284.1| - 4.6e-33 114.6 41.0 4.6e-33 114.6 41.0 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily FGGY_N PF00370.21 gi|126465176|ref|YP_001040285.1| - 1.5e-72 244.1 0.0 2.2e-72 243.5 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|126465176|ref|YP_001040285.1| - 7.3e-60 202.1 0.1 2.5e-59 200.4 0.1 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|126465176|ref|YP_001040285.1| - 0.032 13.7 0.2 0.78 9.2 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family HTH_3 PF01381.22 gi|126465177|ref|YP_001040286.1| - 0.00011 22.2 0.5 0.00066 19.7 0.1 2.2 1 1 1 2 2 2 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|126465177|ref|YP_001040286.1| - 0.00016 21.3 0.2 0.00037 20.1 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_40 PF14493.6 gi|126465177|ref|YP_001040286.1| - 0.00036 20.9 0.2 0.00052 20.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|126465177|ref|YP_001040286.1| - 0.0025 17.3 0.3 0.0078 15.8 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|126465177|ref|YP_001040286.1| - 0.0026 17.5 0.1 0.0046 16.7 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|126465177|ref|YP_001040286.1| - 0.0034 17.1 0.8 0.0067 16.2 0.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126465177|ref|YP_001040286.1| - 0.0041 17.0 0.0 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_ECF PF07638.11 gi|126465177|ref|YP_001040286.1| - 0.0067 16.3 0.0 0.012 15.6 0.0 1.4 1 1 0 1 1 1 1 ECF sigma factor TnsD PF15978.5 gi|126465177|ref|YP_001040286.1| - 0.0076 15.3 0.0 0.0086 15.1 0.0 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D MarR PF01047.22 gi|126465177|ref|YP_001040286.1| - 0.0094 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 MarR family 3H PF02829.14 gi|126465177|ref|YP_001040286.1| - 0.017 15.4 1.4 1.3 9.4 0.3 2.0 1 1 1 2 2 2 0 3H domain MarR_2 PF12802.7 gi|126465177|ref|YP_001040286.1| - 0.019 14.9 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family PAX PF00292.18 gi|126465177|ref|YP_001040286.1| - 0.031 14.2 0.1 0.056 13.4 0.1 1.5 1 1 0 1 1 1 0 'Paired box' domain YdaS_antitoxin PF15943.5 gi|126465177|ref|YP_001040286.1| - 0.043 13.7 0.0 0.097 12.6 0.0 1.6 1 1 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_37 PF13744.6 gi|126465177|ref|YP_001040286.1| - 0.057 13.4 0.1 0.12 12.4 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|126465177|ref|YP_001040286.1| - 0.15 11.6 0.4 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Dimerisation PF08100.11 gi|126465177|ref|YP_001040286.1| - 0.17 11.9 0.1 0.67 10.0 0.0 1.9 2 0 0 2 2 2 0 Dimerisation domain HTH_31 PF13560.6 gi|126465177|ref|YP_001040286.1| - 0.18 12.1 0.1 0.26 11.7 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF438 PF04282.13 gi|126465178|ref|YP_001040287.1| - 1.9e-21 75.8 0.5 1.9e-21 75.8 0.5 2.3 2 0 0 2 2 2 1 Family of unknown function (DUF438) PAS_10 PF13596.6 gi|126465178|ref|YP_001040287.1| - 1.5e-16 60.9 0.0 1e-15 58.2 0.0 2.3 2 0 0 2 2 2 1 PAS domain Hemerythrin PF01814.23 gi|126465178|ref|YP_001040287.1| - 2.7e-08 34.5 0.0 4.7e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.10 gi|126465178|ref|YP_001040287.1| - 0.0063 16.8 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 PAS fold FA_FANCE PF11510.8 gi|126465178|ref|YP_001040287.1| - 0.1 11.9 0.1 0.17 11.2 0.1 1.2 1 0 0 1 1 1 0 Fanconi Anaemia group E protein FANCE DUF5321 PF17254.2 gi|126465178|ref|YP_001040287.1| - 3 7.3 6.9 0.14 11.6 0.5 2.0 3 0 0 3 3 3 0 Family of unknown function (DUF5321) DNA_pol_B PF00136.21 gi|126465179|ref|YP_001040288.1| - 5.9e-25 87.9 0.3 3.1e-24 85.5 0.3 1.9 1 1 0 1 1 1 1 DNA polymerase family B DUF4144 PF13642.6 gi|126465179|ref|YP_001040288.1| - 0.08 13.5 0.0 2.8 8.6 0.0 2.7 2 0 0 2 2 2 0 protein structure with unknown function Methyltransf_11 PF08241.12 gi|126465179|ref|YP_001040288.1| - 0.2 12.3 0.0 0.39 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF1654 PF07867.11 gi|126465180|ref|YP_001040289.1| - 0.004 16.9 0.1 0.0056 16.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1654) AI-2E_transport PF01594.16 gi|126465180|ref|YP_001040289.1| - 0.075 12.2 0.0 0.086 12.0 0.0 1.1 1 0 0 1 1 1 0 AI-2E family transporter UPF0728 PF15092.6 gi|126465181|ref|YP_001040290.1| - 0.11 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0728 ABC_tran PF00005.27 gi|126465182|ref|YP_001040291.1| - 8.1e-36 123.5 0.0 1.2e-35 123.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465182|ref|YP_001040291.1| - 3.4e-07 30.4 2.4 0.0035 17.2 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system oligo_HPY PF08352.12 gi|126465182|ref|YP_001040291.1| - 7.3e-06 26.4 0.1 1.4e-05 25.5 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|126465182|ref|YP_001040291.1| - 0.00097 19.4 0.5 0.0082 16.4 0.5 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|126465182|ref|YP_001040291.1| - 0.0012 18.6 0.1 1.6 8.4 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein SMC_N PF02463.19 gi|126465182|ref|YP_001040291.1| - 0.0013 18.2 0.0 0.0027 17.2 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|126465182|ref|YP_001040291.1| - 0.003 17.5 0.1 0.0075 16.2 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase DEAD PF00270.29 gi|126465182|ref|YP_001040291.1| - 0.0039 17.0 0.6 0.076 12.8 0.6 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_29 PF13555.6 gi|126465182|ref|YP_001040291.1| - 0.0043 16.8 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|126465182|ref|YP_001040291.1| - 0.0053 16.2 1.2 2.2 7.7 0.2 2.6 2 1 0 2 2 2 2 Bacterial TniB protein AAA_24 PF13479.6 gi|126465182|ref|YP_001040291.1| - 0.0097 15.7 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126465182|ref|YP_001040291.1| - 0.016 15.0 0.0 0.032 13.9 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|126465182|ref|YP_001040291.1| - 0.016 15.6 0.1 0.026 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|126465182|ref|YP_001040291.1| - 0.019 15.1 0.1 0.043 13.9 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|126465182|ref|YP_001040291.1| - 0.019 14.8 0.4 0.083 12.8 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|126465182|ref|YP_001040291.1| - 0.024 14.6 0.3 1.6 8.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|126465182|ref|YP_001040291.1| - 0.026 15.0 0.3 0.049 14.1 0.3 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|126465182|ref|YP_001040291.1| - 0.039 13.8 0.1 0.077 12.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3987 PF13148.6 gi|126465182|ref|YP_001040291.1| - 0.049 12.6 0.0 0.14 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) NACHT PF05729.12 gi|126465182|ref|YP_001040291.1| - 0.057 13.3 0.2 0.076 12.9 0.2 1.6 1 1 0 1 1 1 0 NACHT domain ATP-synt_ab PF00006.25 gi|126465182|ref|YP_001040291.1| - 0.058 13.0 0.0 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF188 PF02639.14 gi|126465182|ref|YP_001040291.1| - 0.06 13.0 0.1 0.09 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 AAA_19 PF13245.6 gi|126465182|ref|YP_001040291.1| - 0.067 13.5 0.1 0.14 12.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|126465182|ref|YP_001040291.1| - 0.068 13.4 0.2 0.12 12.6 0.2 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 gi|126465182|ref|YP_001040291.1| - 0.074 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|126465182|ref|YP_001040291.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF87 PF01935.17 gi|126465182|ref|YP_001040291.1| - 0.11 12.6 0.9 0.22 11.6 0.1 1.8 2 1 1 3 3 3 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|126465182|ref|YP_001040291.1| - 0.11 12.2 0.1 0.64 9.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain PhoH PF02562.16 gi|126465182|ref|YP_001040291.1| - 0.11 11.9 0.1 2.2 7.7 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|126465182|ref|YP_001040291.1| - 0.14 11.8 0.1 0.91 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|126465182|ref|YP_001040291.1| - 0.2 10.4 0.0 0.31 9.8 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_tran PF00005.27 gi|126465183|ref|YP_001040292.1| - 1e-24 87.6 0.0 1.5e-24 87.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|126465183|ref|YP_001040292.1| - 8e-18 64.7 0.1 1.5e-17 63.8 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|126465183|ref|YP_001040292.1| - 4.4e-11 42.6 0.0 6.1e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126465183|ref|YP_001040292.1| - 2.2e-07 31.0 0.9 0.0022 17.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126465183|ref|YP_001040292.1| - 0.00018 21.8 0.5 0.002 18.4 0.5 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126465183|ref|YP_001040292.1| - 0.00076 19.4 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|126465183|ref|YP_001040292.1| - 0.0019 18.8 0.1 0.0035 17.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|126465183|ref|YP_001040292.1| - 0.0025 17.5 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|126465183|ref|YP_001040292.1| - 0.016 14.6 0.0 0.057 12.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|126465183|ref|YP_001040292.1| - 0.017 14.6 0.1 0.8 9.1 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein MMR_HSR1 PF01926.23 gi|126465183|ref|YP_001040292.1| - 0.032 14.3 0.0 0.07 13.2 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|126465183|ref|YP_001040292.1| - 0.034 14.5 0.0 0.081 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 gi|126465183|ref|YP_001040292.1| - 0.041 13.6 0.0 0.07 12.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|126465183|ref|YP_001040292.1| - 0.07 13.6 0.1 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|126465183|ref|YP_001040292.1| - 0.1 12.3 0.1 0.78 9.4 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain ATPase PF06745.13 gi|126465183|ref|YP_001040292.1| - 0.11 11.8 0.2 2.8 7.2 0.0 2.2 2 0 0 2 2 2 0 KaiC RNA_helicase PF00910.22 gi|126465183|ref|YP_001040292.1| - 0.12 12.7 0.0 0.32 11.4 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AIG1 PF04548.16 gi|126465183|ref|YP_001040292.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 AIG1 family ABC_ATPase PF09818.9 gi|126465183|ref|YP_001040292.1| - 0.16 10.7 0.9 6.6 5.4 0.4 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 gi|126465184|ref|YP_001040293.1| - 3.9e-23 82.2 11.1 3.9e-23 82.2 11.1 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|126465184|ref|YP_001040293.1| - 4.8e-06 26.4 0.1 4.8e-06 26.4 0.1 4.0 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|126465185|ref|YP_001040294.1| - 1.2e-30 106.6 16.0 1.2e-30 106.6 16.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|126465186|ref|YP_001040295.1| - 2.1e-76 257.3 1.0 2.7e-76 257.0 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SPC25 PF06703.11 gi|126465186|ref|YP_001040295.1| - 0.067 13.0 0.6 0.12 12.1 0.6 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) NCE101 PF11654.8 gi|126465186|ref|YP_001040295.1| - 0.089 12.5 0.1 0.23 11.2 0.1 1.7 1 0 0 1 1 1 0 Non-classical export protein 1 DUF89 PF01937.19 gi|126465187|ref|YP_001040296.1| - 6.4e-33 114.2 0.0 8.2e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Aminotran_1_2 PF00155.21 gi|126465188|ref|YP_001040297.1| - 3.4e-73 246.9 0.0 3.9e-73 246.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|126465188|ref|YP_001040297.1| - 1e-11 44.8 0.0 1.5e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|126465188|ref|YP_001040297.1| - 4.1e-08 32.6 0.0 8.3e-08 31.6 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|126465188|ref|YP_001040297.1| - 1.5e-06 27.7 0.0 2.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|126465188|ref|YP_001040297.1| - 2.6e-06 26.3 0.0 4e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 gi|126465188|ref|YP_001040297.1| - 0.052 12.1 0.1 0.11 11.0 0.1 1.6 1 1 0 1 1 1 0 Methionine gamma-lyase OTCace PF00185.24 gi|126465190|ref|YP_001040299.1| - 1.4e-41 142.2 0.0 3.3e-41 141.0 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|126465190|ref|YP_001040299.1| - 1.2e-37 129.2 0.0 2.2e-37 128.3 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Acetyltransf_1 PF00583.25 gi|126465190|ref|YP_001040299.1| - 0.073 13.3 1.8 0.66 10.2 0.5 2.8 2 1 1 3 3 3 0 Acetyltransferase (GNAT) family Methyltransf_31 PF13847.6 gi|126465190|ref|YP_001040299.1| - 0.14 12.0 0.0 2.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain PBP_like PF12727.7 gi|126465191|ref|YP_001040300.1| - 2.2e-44 150.9 0.0 3e-44 150.5 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|126465191|ref|YP_001040300.1| - 5.9e-10 38.9 0.0 1.2e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family SBP_bac_11 PF13531.6 gi|126465192|ref|YP_001040301.1| - 2e-33 116.1 0.0 2.5e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126465192|ref|YP_001040301.1| - 8.6e-12 45.6 0.1 1.3e-11 45.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|126465193|ref|YP_001040302.1| - 2e-17 63.5 16.7 2e-17 63.5 16.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TMEMspv1-c74-12 PF11044.8 gi|126465193|ref|YP_001040302.1| - 0.094 12.7 0.4 0.094 12.7 0.4 2.6 3 0 0 3 3 3 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein PsbM PF05151.12 gi|126465193|ref|YP_001040302.1| - 0.19 11.5 11.3 0.38 10.6 0.6 3.9 3 0 0 3 3 3 0 Photosystem II reaction centre M protein (PsbM) ABC_tran PF00005.27 gi|126465194|ref|YP_001040303.1| - 1.7e-28 99.9 0.0 2.4e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465194|ref|YP_001040303.1| - 3.4e-05 23.8 1.4 0.0016 18.3 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465194|ref|YP_001040303.1| - 4.7e-05 22.9 0.0 0.0005 19.6 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|126465194|ref|YP_001040303.1| - 0.022 15.2 0.0 0.026 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126465194|ref|YP_001040303.1| - 0.052 13.5 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|126465194|ref|YP_001040303.1| - 0.054 13.7 0.0 0.95 9.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|126465194|ref|YP_001040303.1| - 0.058 12.5 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|126465194|ref|YP_001040303.1| - 0.058 13.7 0.0 0.13 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|126465194|ref|YP_001040303.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|126465194|ref|YP_001040303.1| - 0.092 12.5 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|126465194|ref|YP_001040303.1| - 0.13 11.9 0.0 0.49 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain CAMSAP_CKK PF08683.11 gi|126465195|ref|YP_001040304.1| - 0.00066 19.8 0.3 0.001 19.2 0.3 1.3 1 0 0 1 1 1 1 Microtubule-binding calmodulin-regulated spectrin-associated GIT1_C PF12205.8 gi|126465195|ref|YP_001040304.1| - 0.0088 16.2 0.9 0.014 15.5 0.9 1.3 1 0 0 1 1 1 1 G protein-coupled receptor kinase-interacting protein 1 C term F_actin_bind PF08919.10 gi|126465195|ref|YP_001040304.1| - 0.043 13.9 0.2 0.064 13.4 0.2 1.2 1 0 0 1 1 1 0 F-actin binding Csm2_III-A PF03750.13 gi|126465195|ref|YP_001040304.1| - 0.057 14.3 2.5 0.076 13.9 1.4 1.7 1 1 1 2 2 2 0 Csm2 Type III-A GPS2_interact PF15784.5 gi|126465195|ref|YP_001040304.1| - 0.56 10.7 5.7 0.79 10.2 5.7 1.2 1 0 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain Fib_alpha PF08702.10 gi|126465196|ref|YP_001040305.1| - 0.0081 16.4 1.2 0.011 15.9 1.2 1.2 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Prominin PF05478.11 gi|126465196|ref|YP_001040305.1| - 0.036 12.0 0.1 0.075 11.0 0.1 1.5 1 0 0 1 1 1 0 Prominin Lipoprotein_7 PF01540.16 gi|126465196|ref|YP_001040305.1| - 0.057 12.7 2.1 0.072 12.4 2.1 1.1 1 0 0 1 1 1 0 Adhesin lipoprotein DUF3417 PF11897.8 gi|126465196|ref|YP_001040305.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) rRNA_proc-arch PF13234.6 gi|126465196|ref|YP_001040305.1| - 0.3 11.0 1.8 13 5.6 0.3 2.0 1 1 1 2 2 2 0 rRNA-processing arch domain TctB PF07331.11 gi|126465196|ref|YP_001040305.1| - 2.6 8.3 15.0 0.12 12.7 6.8 2.0 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family SNF PF00209.18 gi|126465197|ref|YP_001040306.1| - 1.1e-52 179.5 31.7 3.4e-30 105.3 17.1 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family MarC PF01914.17 gi|126465199|ref|YP_001040308.1| - 3.2e-39 134.4 15.7 4.1e-39 134.1 15.7 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Prefoldin_2 PF01920.20 gi|126465201|ref|YP_001040310.1| - 0.00021 21.2 5.4 0.00021 21.2 5.4 1.6 2 0 0 2 2 2 1 Prefoldin subunit DUF5320 PF17253.2 gi|126465201|ref|YP_001040310.1| - 0.00038 21.5 2.7 0.00089 20.3 0.3 2.3 1 1 1 2 2 2 1 Family of unknown function (DUF5320) DUF16 PF01519.16 gi|126465201|ref|YP_001040310.1| - 0.0029 18.0 1.4 0.0029 18.0 1.4 1.4 2 0 0 2 2 1 1 Protein of unknown function DUF16 XhlA PF10779.9 gi|126465201|ref|YP_001040310.1| - 0.0035 17.5 3.3 0.0051 17.0 3.3 1.1 1 0 0 1 1 1 1 Haemolysin XhlA Sec2p PF06428.11 gi|126465201|ref|YP_001040310.1| - 0.006 16.5 3.9 0.0089 16.0 3.9 1.2 1 0 0 1 1 1 1 GDP/GTP exchange factor Sec2p DUF812 PF05667.11 gi|126465201|ref|YP_001040310.1| - 0.0085 15.0 0.1 0.0085 15.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF2205 PF10224.9 gi|126465201|ref|YP_001040310.1| - 0.012 15.6 1.8 0.019 14.9 1.8 1.3 1 0 0 1 1 1 0 Short coiled-coil protein AAA_13 PF13166.6 gi|126465201|ref|YP_001040310.1| - 0.019 13.6 1.2 0.023 13.4 1.2 1.1 1 0 0 1 1 1 0 AAA domain KxDL PF10241.9 gi|126465201|ref|YP_001040310.1| - 0.026 14.8 0.3 0.05 13.9 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein AAA_23 PF13476.6 gi|126465201|ref|YP_001040310.1| - 0.03 14.8 0.4 0.032 14.7 0.4 1.1 1 0 0 1 1 1 0 AAA domain DUF4140 PF13600.6 gi|126465201|ref|YP_001040310.1| - 0.032 14.6 0.0 0.038 14.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) GrpE PF01025.19 gi|126465201|ref|YP_001040310.1| - 0.037 13.7 2.5 0.048 13.3 2.5 1.1 1 0 0 1 1 1 0 GrpE Fib_alpha PF08702.10 gi|126465201|ref|YP_001040310.1| - 0.046 13.9 0.3 0.046 13.9 0.3 1.4 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|126465201|ref|YP_001040310.1| - 0.046 12.6 3.1 0.06 12.2 3.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein FapA PF03961.13 gi|126465201|ref|YP_001040310.1| - 0.05 12.2 0.0 0.066 11.8 0.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Helo_like_N PF17111.5 gi|126465201|ref|YP_001040310.1| - 0.058 12.8 0.7 0.079 12.3 0.7 1.1 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins Tektin PF03148.14 gi|126465201|ref|YP_001040310.1| - 0.073 11.8 3.4 0.088 11.6 3.4 1.1 1 0 0 1 1 1 0 Tektin family APG6_N PF17675.1 gi|126465201|ref|YP_001040310.1| - 0.083 13.4 7.7 0.12 12.8 7.7 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF3552 PF12072.8 gi|126465201|ref|YP_001040310.1| - 0.23 10.8 4.9 0.31 10.4 4.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) SidC_N PF18219.1 gi|126465201|ref|YP_001040310.1| - 0.62 9.0 2.9 0.79 8.6 2.9 1.1 1 0 0 1 1 1 0 SidC N-terminal domain TPR_MLP1_2 PF07926.12 gi|126465201|ref|YP_001040310.1| - 4.2 7.4 11.4 0.18 11.9 6.1 1.3 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein DivIC PF04977.15 gi|126465201|ref|YP_001040310.1| - 4.5 7.1 9.2 0.25 11.1 3.3 1.8 2 0 0 2 2 2 0 Septum formation initiator GDP_Man_Dehyd PF16363.5 gi|126465202|ref|YP_001040311.1| - 2.1e-60 204.9 0.0 8.5e-60 202.9 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|126465202|ref|YP_001040311.1| - 1.9e-58 197.8 0.0 2.7e-58 197.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|126465202|ref|YP_001040311.1| - 7.1e-26 90.8 0.0 8.9e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|126465202|ref|YP_001040311.1| - 3e-17 62.6 0.0 3.7e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|126465202|ref|YP_001040311.1| - 8.1e-17 61.3 0.0 4.4e-16 58.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|126465202|ref|YP_001040311.1| - 2.7e-11 43.7 0.0 4.2e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|126465202|ref|YP_001040311.1| - 8.4e-10 38.6 0.0 1e-08 35.1 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 gi|126465202|ref|YP_001040311.1| - 9.8e-10 38.0 0.2 9.3e-08 31.5 0.2 2.5 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|126465202|ref|YP_001040311.1| - 1.6e-07 31.0 0.0 8e-05 22.2 0.0 2.3 2 0 0 2 2 2 2 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|126465202|ref|YP_001040311.1| - 0.0098 16.2 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|126465202|ref|YP_001040311.1| - 0.012 15.5 0.1 0.05 13.5 0.1 1.9 1 1 0 1 1 1 0 KR domain POR PF01558.18 gi|126465203|ref|YP_001040312.1| - 2.5e-38 131.9 0.0 3e-38 131.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|126465204|ref|YP_001040313.1| - 3.2e-23 82.2 0.1 1e-22 80.6 0.1 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|126465204|ref|YP_001040313.1| - 1.5e-12 47.8 0.0 3.2e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|126465204|ref|YP_001040313.1| - 1.1e-10 40.8 9.9 2e-07 30.5 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|126465204|ref|YP_001040313.1| - 2e-07 30.7 10.1 9.4e-05 22.3 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126465204|ref|YP_001040313.1| - 2.1e-07 31.4 7.0 0.00012 22.6 8.6 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126465204|ref|YP_001040313.1| - 6.7e-07 29.3 11.0 0.00073 19.6 3.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126465204|ref|YP_001040313.1| - 5.4e-06 26.5 8.0 1.4e-05 25.1 8.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126465204|ref|YP_001040313.1| - 4.3e-05 23.6 9.2 0.0038 17.3 10.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465204|ref|YP_001040313.1| - 5.8e-05 24.0 5.4 0.00081 20.3 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126465204|ref|YP_001040313.1| - 6.4e-05 22.8 17.5 0.00061 19.7 1.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126465204|ref|YP_001040313.1| - 0.00044 20.5 11.4 0.063 13.8 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|126465204|ref|YP_001040313.1| - 0.0039 16.8 0.1 0.018 14.6 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|126465204|ref|YP_001040313.1| - 0.0043 16.8 0.0 0.013 15.2 0.0 1.8 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Fer4_8 PF13183.6 gi|126465204|ref|YP_001040313.1| - 0.0049 17.3 4.3 0.24 11.8 0.8 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126465204|ref|YP_001040313.1| - 0.3 11.8 10.0 3.7 8.4 0.8 2.9 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|126465204|ref|YP_001040313.1| - 0.33 11.5 10.5 0.31 11.6 2.0 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126465204|ref|YP_001040313.1| - 1.5 9.4 9.9 8.3 7.0 1.3 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|126465204|ref|YP_001040313.1| - 1.8 9.5 5.1 2.6 8.9 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126465204|ref|YP_001040313.1| - 5.3 8.2 18.7 0.29 12.2 6.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4777 PF16007.5 gi|126465205|ref|YP_001040314.1| - 0.016 15.4 0.0 0.03 14.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) PI-TkoII_IV PF18714.1 gi|126465205|ref|YP_001040314.1| - 0.056 12.9 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase II intein Domain IV Ribosomal_L35Ae PF01247.18 gi|126465207|ref|YP_001040316.1| - 4.7e-10 39.5 0.4 8e-10 38.8 0.4 1.4 1 1 0 1 1 1 1 Ribosomal protein L35Ae tRNA-synt_2 PF00152.20 gi|126465208|ref|YP_001040317.1| - 6.6e-86 288.2 0.1 8.3e-86 287.9 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) ADPrib_exo_Tox PF03496.14 gi|126465208|ref|YP_001040317.1| - 0.011 15.1 0.3 0.021 14.2 0.3 1.4 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme tRNA-synt_2d PF01409.20 gi|126465208|ref|YP_001040317.1| - 0.014 14.9 0.4 0.041 13.4 0.2 1.8 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) PadR PF03551.14 gi|126465209|ref|YP_001040318.1| - 1.8e-06 27.8 1.5 3.2e-06 27.0 1.5 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|126465209|ref|YP_001040318.1| - 0.0006 19.6 0.6 0.0013 18.5 0.6 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|126465209|ref|YP_001040318.1| - 0.015 15.6 0.1 0.029 14.7 0.1 1.5 1 1 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 gi|126465209|ref|YP_001040318.1| - 0.026 15.0 0.1 0.091 13.3 0.1 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|126465209|ref|YP_001040318.1| - 0.032 14.1 1.2 0.061 13.2 0.4 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|126465209|ref|YP_001040318.1| - 0.036 14.0 2.7 0.087 12.8 2.7 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|126465209|ref|YP_001040318.1| - 0.054 13.5 0.9 0.054 13.5 0.9 1.9 2 1 1 3 3 3 0 Winged helix-turn-helix Mrr_N PF14338.6 gi|126465209|ref|YP_001040318.1| - 0.06 13.5 0.3 0.72 10.0 0.1 2.3 2 1 1 3 3 3 0 Mrr N-terminal domain SlpA PF03217.14 gi|126465209|ref|YP_001040318.1| - 0.067 13.8 3.2 0.15 12.6 3.2 1.7 1 0 0 1 1 1 0 Surface later protein A domain PaaX PF07848.12 gi|126465209|ref|YP_001040318.1| - 0.093 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein YjcQ PF09639.10 gi|126465209|ref|YP_001040318.1| - 0.096 12.9 4.6 0.09 13.0 1.0 2.3 1 1 2 3 3 3 0 YjcQ protein SPG48 PF14764.6 gi|126465209|ref|YP_001040318.1| - 0.12 12.8 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 AP-5 complex subunit, vesicle trafficking Inos-1-P_synth PF01658.17 gi|126465210|ref|YP_001040319.1| - 7.9e-21 74.4 0.0 2.9e-20 72.6 0.0 2.0 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|126465210|ref|YP_001040319.1| - 3.9e-05 23.2 0.0 7.1e-05 22.3 0.0 1.5 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase ACT_6 PF13740.6 gi|126465210|ref|YP_001040319.1| - 0.023 14.7 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 ACT domain ParG PF09274.10 gi|126465210|ref|YP_001040319.1| - 0.029 14.5 0.0 0.056 13.6 0.0 1.5 1 0 0 1 1 1 0 ParG PEP-utilisers_N PF05524.13 gi|126465210|ref|YP_001040319.1| - 0.078 13.2 0.3 0.29 11.3 0.3 1.9 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal Abhydrolase_1 PF00561.20 gi|126465210|ref|YP_001040319.1| - 0.16 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 alpha/beta hydrolase fold SBP_bac_8 PF13416.6 gi|126465211|ref|YP_001040320.1| - 1.1e-40 140.2 1.1 1.1e-40 140.2 1.1 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|126465211|ref|YP_001040320.1| - 1.5e-37 130.2 6.7 2.3e-37 129.6 6.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|126465211|ref|YP_001040320.1| - 6.6e-08 32.3 0.2 1.7e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|126465211|ref|YP_001040320.1| - 9.7e-06 25.5 0.0 2.9e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Wzz PF02706.15 gi|126465211|ref|YP_001040320.1| - 0.22 11.8 1.6 1.2 9.5 0.9 2.6 2 0 0 2 2 2 0 Chain length determinant protein DUF2749 PF10907.8 gi|126465211|ref|YP_001040320.1| - 0.24 11.6 0.9 0.56 10.4 0.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF4307 PF14155.6 gi|126465211|ref|YP_001040320.1| - 0.3 10.9 0.9 0.63 9.9 0.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) BPD_transp_1 PF00528.22 gi|126465212|ref|YP_001040321.1| - 1.4e-11 44.5 30.7 2.6e-11 43.6 19.3 3.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|126465213|ref|YP_001040322.1| - 5.6e-19 68.6 20.9 5.6e-19 68.6 20.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|126465214|ref|YP_001040323.1| - 5.2e-33 114.5 0.0 8.7e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|126465214|ref|YP_001040323.1| - 2.5e-16 60.2 0.0 8.7e-16 58.5 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|126465214|ref|YP_001040323.1| - 1.9e-06 27.9 0.1 0.011 15.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|126465214|ref|YP_001040323.1| - 1.2e-05 25.3 0.0 4.3e-05 23.6 0.0 2.0 2 0 0 2 2 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|126465214|ref|YP_001040323.1| - 0.00023 21.6 0.0 0.00088 19.8 0.0 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|126465214|ref|YP_001040323.1| - 0.00082 19.8 0.0 0.027 14.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126465214|ref|YP_001040323.1| - 0.0015 18.9 0.0 0.0029 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|126465214|ref|YP_001040323.1| - 0.0021 18.0 0.0 0.0044 17.0 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|126465214|ref|YP_001040323.1| - 0.0051 17.1 0.6 0.018 15.3 0.6 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|126465214|ref|YP_001040323.1| - 0.008 15.6 0.3 0.29 10.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|126465214|ref|YP_001040323.1| - 0.018 14.9 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|126465214|ref|YP_001040323.1| - 0.02 15.1 0.1 0.047 13.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|126465214|ref|YP_001040323.1| - 0.02 15.2 0.0 0.24 11.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MIT_C PF16565.5 gi|126465214|ref|YP_001040323.1| - 0.026 14.5 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_30 PF13604.6 gi|126465214|ref|YP_001040323.1| - 0.034 13.9 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain TOBE PF03459.17 gi|126465214|ref|YP_001040323.1| - 0.062 13.6 0.0 0.22 11.8 0.0 2.0 2 0 0 2 2 1 0 TOBE domain AAA_5 PF07728.14 gi|126465214|ref|YP_001040323.1| - 0.063 13.3 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|126465214|ref|YP_001040323.1| - 0.067 13.7 0.7 0.14 12.7 0.1 1.8 2 0 0 2 2 2 0 AAA domain YonK PF09642.10 gi|126465214|ref|YP_001040323.1| - 0.079 13.1 0.1 0.37 11.0 0.0 2.1 2 0 0 2 2 2 0 YonK protein Radical_SAM PF04055.21 gi|126465214|ref|YP_001040323.1| - 0.09 13.1 0.2 0.93 9.8 0.1 2.6 1 1 1 2 2 2 0 Radical SAM superfamily Ribosomal_S17 PF00366.20 gi|126465214|ref|YP_001040323.1| - 0.1 12.7 0.1 0.29 11.2 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein S17 MoCF_biosynth PF00994.24 gi|126465215|ref|YP_001040324.1| - 1.5e-28 99.3 0.0 1.8e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain MutL PF13941.6 gi|126465215|ref|YP_001040324.1| - 0.018 13.7 0.0 0.018 13.7 0.0 1.1 1 0 0 1 1 1 0 MutL protein HTH_34 PF13601.6 gi|126465215|ref|YP_001040324.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Thioredoxin PF00085.20 gi|126465216|ref|YP_001040325.1| - 0.018 15.0 0.3 0.057 13.4 0.3 1.9 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_4 PF13462.6 gi|126465216|ref|YP_001040325.1| - 0.11 12.7 0.6 5.8 7.0 0.0 2.4 3 0 0 3 3 3 0 Thioredoxin DUF1640 PF07798.11 gi|126465217|ref|YP_001040326.1| - 0.0052 16.8 1.1 0.0063 16.6 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1640) p450 PF00067.22 gi|126465217|ref|YP_001040326.1| - 0.022 13.5 0.9 0.024 13.4 0.9 1.0 1 0 0 1 1 1 0 Cytochrome P450 YojJ PF10372.9 gi|126465217|ref|YP_001040326.1| - 0.055 13.6 0.3 0.087 12.9 0.3 1.3 1 0 0 1 1 1 0 Bacterial membrane-spanning protein N-terminus DUF2019 PF09450.10 gi|126465219|ref|YP_001040328.1| - 0.02 14.8 0.1 0.034 14.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF2019) Dymeclin PF09742.9 gi|126465219|ref|YP_001040328.1| - 0.022 13.2 0.4 0.024 13.1 0.4 1.0 1 0 0 1 1 1 0 Dyggve-Melchior-Clausen syndrome protein TcdB_N PF12918.7 gi|126465219|ref|YP_001040328.1| - 0.091 13.1 4.1 0.31 11.3 2.0 2.4 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain PUB PF09409.10 gi|126465219|ref|YP_001040328.1| - 0.23 11.4 1.8 1.3 9.0 0.4 2.3 2 1 0 2 2 2 0 PUB domain RAMPs PF03787.15 gi|126465220|ref|YP_001040329.1| - 1.2e-11 45.1 0.9 1.9e-11 44.4 0.9 1.4 1 0 0 1 1 1 1 RAMP superfamily Polbeta PF18765.1 gi|126465220|ref|YP_001040329.1| - 0.013 15.5 0.3 0.069 13.2 0.0 2.1 2 0 0 2 2 2 0 Polymerase beta, Nucleotidyltransferase TM_PBP2_N PF16296.5 gi|126465220|ref|YP_001040329.1| - 0.049 13.8 0.1 0.88 9.7 0.0 2.3 2 0 0 2 2 2 0 N-terminal of TM subunit in PBP-dependent ABC transporters RAMPs PF03787.15 gi|126465221|ref|YP_001040330.1| - 3.1e-07 30.7 0.1 5.1e-07 29.9 0.1 1.4 1 0 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|126465222|ref|YP_001040331.1| - 3e-07 30.7 1.5 4.6e-07 30.1 1.5 1.4 1 0 0 1 1 1 1 RAMP superfamily Csm1_B PF18211.1 gi|126465223|ref|YP_001040332.1| - 2.2e-13 49.8 0.9 1.4e-12 47.2 0.1 2.6 2 0 0 2 2 2 1 Csm1 subunit domain B HD PF01966.22 gi|126465223|ref|YP_001040332.1| - 1.6e-05 25.1 1.9 1.6e-05 25.1 1.9 2.8 3 0 0 3 3 3 1 HD domain DUF2797 PF10977.8 gi|126465225|ref|YP_001040334.1| - 5.2e-06 26.5 0.3 7.7e-06 26.0 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) DUF4828 PF16110.5 gi|126465225|ref|YP_001040334.1| - 0.061 13.8 0.5 0.14 12.7 0.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4828) Cas_Cas1 PF01867.16 gi|126465226|ref|YP_001040335.1| - 1.3e-63 214.8 0.0 1.5e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 GSDH PF07995.11 gi|126465226|ref|YP_001040335.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 Glucose / Sorbosone dehydrogenase Csa1 PF06023.12 gi|126465227|ref|YP_001040336.1| - 2.8e-72 243.5 0.0 3.4e-72 243.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|126465227|ref|YP_001040336.1| - 0.00025 21.0 0.0 0.0015 18.5 0.0 2.2 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|126465228|ref|YP_001040337.1| - 5.4e-16 58.5 0.0 6.6e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cytochrom_C PF00034.21 gi|126465228|ref|YP_001040337.1| - 0.23 12.6 0.0 0.26 12.4 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c Cas_Cas4 PF01930.17 gi|126465229|ref|YP_001040338.1| - 9.1e-19 68.1 0.2 1e-18 68.0 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|126465229|ref|YP_001040338.1| - 4.2e-11 43.2 0.1 8.8e-07 29.1 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas6_N PF17952.1 gi|126465230|ref|YP_001040339.1| - 7.3e-09 35.9 0.4 1.7e-08 34.8 0.1 1.8 2 0 0 2 2 2 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|126465230|ref|YP_001040339.1| - 9.3e-08 32.6 0.0 2e-07 31.5 0.0 1.6 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 TrmB PF01978.19 gi|126465231|ref|YP_001040340.1| - 2e-08 34.0 0.0 5.3e-08 32.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|126465231|ref|YP_001040340.1| - 5.2e-08 32.7 0.1 8.9e-08 31.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|126465231|ref|YP_001040340.1| - 1.4e-07 31.2 0.0 3.4e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|126465231|ref|YP_001040340.1| - 1.5e-07 31.2 0.0 7.9e-07 28.9 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|126465231|ref|YP_001040340.1| - 1.6e-07 30.8 0.7 3.2e-07 29.8 0.7 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding SMC_ScpB PF04079.16 gi|126465231|ref|YP_001040340.1| - 0.00023 20.8 0.0 0.00035 20.2 0.0 1.3 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Penicillinase_R PF03965.16 gi|126465231|ref|YP_001040340.1| - 0.00057 20.2 0.0 0.00099 19.5 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|126465231|ref|YP_001040340.1| - 0.00089 19.7 0.0 0.0036 17.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Topoisom_bac PF01131.20 gi|126465231|ref|YP_001040340.1| - 0.023 13.7 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_20 PF12840.7 gi|126465231|ref|YP_001040340.1| - 0.027 14.5 0.1 0.09 12.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|126465231|ref|YP_001040340.1| - 0.03 14.3 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.16 gi|126465231|ref|YP_001040340.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain BLACT_WH PF17778.1 gi|126465231|ref|YP_001040340.1| - 0.16 12.0 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain Sigma70_r4 PF04545.16 gi|126465231|ref|YP_001040340.1| - 0.32 10.5 1.9 0.47 10.0 0.3 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 RNA_pol_Rpb4 PF03874.16 gi|126465232|ref|YP_001040341.1| - 0.035 14.4 0.1 0.055 13.8 0.1 1.3 1 1 0 1 1 1 0 RNA polymerase Rpb4 DevR PF01905.16 gi|126465233|ref|YP_001040342.1| - 2.5e-87 292.3 0.7 3.1e-87 292.1 0.7 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Mad3_BUB1_II PF08171.11 gi|126465233|ref|YP_001040342.1| - 0.015 15.4 0.3 0.015 15.4 0.3 2.0 3 0 0 3 3 3 0 Mad3/BUB1 homology region 2 CCDC32 PF14989.6 gi|126465233|ref|YP_001040342.1| - 0.11 12.5 0.5 3 7.8 0.0 2.3 2 0 0 2 2 2 0 Coiled-coil domain containing 32 Cas_Cas5d PF09704.10 gi|126465234|ref|YP_001040343.1| - 3.7e-23 82.5 0.0 4.5e-23 82.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_Cmr3 PF09700.10 gi|126465234|ref|YP_001040343.1| - 0.091 12.2 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr3) Pox_E10 PF04805.12 gi|126465235|ref|YP_001040344.1| - 0.15 12.0 0.5 0.42 10.5 0.5 1.8 1 0 0 1 1 1 0 E10-like protein conserved region DEAD PF00270.29 gi|126465236|ref|YP_001040345.1| - 2.9e-09 36.9 0.6 1.4e-07 31.5 0.1 3.0 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126465236|ref|YP_001040345.1| - 1.2e-07 32.1 0.2 2.9e-07 30.8 0.2 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_22 PF13401.6 gi|126465236|ref|YP_001040345.1| - 0.0097 16.2 1.8 0.22 11.8 0.9 3.0 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|126465236|ref|YP_001040345.1| - 0.031 14.3 0.1 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|126465236|ref|YP_001040345.1| - 0.11 13.0 0.8 4.4 7.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain HD PF01966.22 gi|126465237|ref|YP_001040346.1| - 0.0079 16.4 0.1 0.015 15.5 0.1 1.5 1 0 0 1 1 1 1 HD domain MazE_antitoxin PF04014.18 gi|126465238|ref|YP_001040347.1| - 1.1e-09 37.9 1.4 2e-09 37.2 1.4 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin CRISPR_Cas6 PF10040.9 gi|126465240|ref|YP_001040349.1| - 2e-13 50.8 0.0 4.8e-13 49.6 0.0 1.6 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|126465240|ref|YP_001040349.1| - 1.5e-09 38.1 0.0 2.8e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Cas6 N-terminal domain FTP PF07504.13 gi|126465241|ref|YP_001040350.1| - 0.021 14.7 0.0 0.046 13.6 0.0 1.6 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif DeoC PF01791.9 gi|126465242|ref|YP_001040351.1| - 1.6e-13 50.8 0.6 1.9e-13 50.6 0.6 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|126465242|ref|YP_001040351.1| - 6.4e-06 25.6 3.0 1.2e-05 24.7 1.7 1.8 1 1 1 2 2 2 1 Dihydroorotate dehydrogenase PhosphMutase PF10143.9 gi|126465243|ref|YP_001040352.1| - 2.5e-49 167.4 0.0 3.4e-49 167.0 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|126465243|ref|YP_001040352.1| - 1.5e-28 99.8 0.0 1.9e-28 99.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|126465243|ref|YP_001040352.1| - 0.0022 17.7 0.1 0.036 13.7 0.0 2.2 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.20 gi|126465243|ref|YP_001040352.1| - 0.027 13.4 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Alkaline phosphatase tRNA-synt_2 PF00152.20 gi|126465244|ref|YP_001040353.1| - 6.4e-48 163.4 0.0 8.2e-48 163.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) Metallophos_2 PF12850.7 gi|126465245|ref|YP_001040354.1| - 1.5e-21 77.3 0.0 2.1e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|126465245|ref|YP_001040354.1| - 5.2e-12 46.7 1.8 1e-11 45.7 1.8 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.11 gi|126465245|ref|YP_001040354.1| - 0.0025 16.2 0.7 0.019 13.3 0.7 2.0 1 1 0 1 1 1 1 Firmicute fructose-1,6-bisphosphatase Na_sulph_symp PF00939.19 gi|126465246|ref|YP_001040355.1| - 2.2e-29 102.8 23.6 2.8e-29 102.5 23.6 1.1 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|126465246|ref|YP_001040355.1| - 1.1e-21 77.4 28.1 4.3e-11 42.6 15.4 2.0 2 0 0 2 2 2 2 Citrate transporter RHH_1 PF01402.21 gi|126465247|ref|YP_001040356.1| - 0.0045 16.9 0.1 0.049 13.6 0.0 2.2 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family Trans_coact PF16805.5 gi|126465247|ref|YP_001040356.1| - 0.015 15.3 0.8 0.16 12.1 0.1 2.1 2 0 0 2 2 2 0 Phage late-transcription coactivator HMA PF00403.26 gi|126465247|ref|YP_001040356.1| - 0.027 14.9 0.9 2 9.0 0.1 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain ATP-sulfurylase PF01747.17 gi|126465248|ref|YP_001040357.1| - 6.7e-87 290.4 0.0 8.7e-87 290.0 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|126465248|ref|YP_001040357.1| - 2.3e-58 196.4 0.0 3.8e-58 195.7 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain TF_Zn_Ribbon PF08271.12 gi|126465248|ref|YP_001040357.1| - 0.15 11.6 0.2 0.35 10.4 0.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding CheR_N PF03705.15 gi|126465249|ref|YP_001040358.1| - 9e-05 22.1 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain POTRA PF07244.15 gi|126465249|ref|YP_001040358.1| - 0.0025 18.3 0.2 0.0089 16.6 0.2 1.8 1 1 1 2 2 2 1 Surface antigen variable number repeat RelB_N PF18506.1 gi|126465249|ref|YP_001040358.1| - 0.0069 16.2 0.4 0.082 12.7 0.0 2.2 2 0 0 2 2 2 1 RelB Antitoxin alpha helical domain Imm74 PF15603.6 gi|126465249|ref|YP_001040358.1| - 0.015 15.4 0.1 0.017 15.3 0.1 1.2 1 0 0 1 1 1 0 Immunity protein 74 HMA PF00403.26 gi|126465249|ref|YP_001040358.1| - 0.14 12.6 1.0 13 6.3 0.1 2.3 2 1 0 2 2 2 0 Heavy-metal-associated domain APS_kinase PF01583.20 gi|126465250|ref|YP_001040359.1| - 2.3e-61 206.3 0.0 2.7e-61 206.1 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.10 gi|126465250|ref|YP_001040359.1| - 6.2e-10 39.0 0.0 7e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|126465250|ref|YP_001040359.1| - 2.1e-09 37.7 0.0 2.6e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126465250|ref|YP_001040359.1| - 9.8e-09 35.8 0.0 1.5e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|126465250|ref|YP_001040359.1| - 4.8e-06 26.7 0.0 5.7e-06 26.4 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|126465250|ref|YP_001040359.1| - 7.6e-06 25.1 0.0 1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|126465250|ref|YP_001040359.1| - 2.2e-05 24.5 0.0 8.7e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 NTPase AAA_17 PF13207.6 gi|126465250|ref|YP_001040359.1| - 8.3e-05 23.0 0.1 0.00026 21.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126465250|ref|YP_001040359.1| - 0.00013 21.8 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|126465250|ref|YP_001040359.1| - 0.00013 21.9 0.0 0.00019 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|126465250|ref|YP_001040359.1| - 0.00028 20.8 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|126465250|ref|YP_001040359.1| - 0.00031 20.4 0.0 0.00052 19.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|126465250|ref|YP_001040359.1| - 0.00034 20.5 0.2 0.00057 19.7 0.0 1.6 2 1 0 2 2 1 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|126465250|ref|YP_001040359.1| - 0.00041 20.0 0.0 0.00059 19.5 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|126465250|ref|YP_001040359.1| - 0.00055 20.4 0.0 0.00073 20.0 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126465250|ref|YP_001040359.1| - 0.00083 19.8 0.0 0.00088 19.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|126465250|ref|YP_001040359.1| - 0.0019 17.9 0.0 0.015 15.0 0.0 2.0 2 0 0 2 2 2 1 Thymidylate kinase NACHT PF05729.12 gi|126465250|ref|YP_001040359.1| - 0.0036 17.2 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.21 gi|126465250|ref|YP_001040359.1| - 0.0041 16.5 0.0 0.032 13.6 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|126465250|ref|YP_001040359.1| - 0.0046 17.2 0.0 0.017 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|126465250|ref|YP_001040359.1| - 0.0051 16.0 0.0 0.0098 15.1 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain ParA PF10609.9 gi|126465250|ref|YP_001040359.1| - 0.0056 16.2 0.0 0.0076 15.7 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_28 PF13521.6 gi|126465250|ref|YP_001040359.1| - 0.0066 16.7 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|126465250|ref|YP_001040359.1| - 0.009 16.5 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter RNA_helicase PF00910.22 gi|126465250|ref|YP_001040359.1| - 0.016 15.6 0.0 0.026 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase LytR_C PF13399.6 gi|126465250|ref|YP_001040359.1| - 0.017 16.1 0.0 0.028 15.4 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator AAA_5 PF07728.14 gi|126465250|ref|YP_001040359.1| - 0.018 15.1 0.0 0.028 14.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MipZ PF09140.11 gi|126465250|ref|YP_001040359.1| - 0.021 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ Zeta_toxin PF06414.12 gi|126465250|ref|YP_001040359.1| - 0.023 14.0 0.0 0.041 13.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin 6PF2K PF01591.18 gi|126465250|ref|YP_001040359.1| - 0.029 13.7 0.1 0.062 12.6 0.0 1.7 2 0 0 2 2 2 0 6-phosphofructo-2-kinase DUF3320 PF11784.8 gi|126465250|ref|YP_001040359.1| - 0.032 14.2 0.0 0.15 12.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) ATPase_2 PF01637.18 gi|126465250|ref|YP_001040359.1| - 0.034 14.1 0.1 0.098 12.6 0.0 1.6 2 1 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|126465250|ref|YP_001040359.1| - 0.042 13.6 0.1 0.055 13.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|126465250|ref|YP_001040359.1| - 0.043 13.4 0.3 0.069 12.7 0.3 1.5 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|126465250|ref|YP_001040359.1| - 0.048 13.8 0.3 0.23 11.6 0.3 2.2 1 1 0 1 1 1 0 Shikimate kinase CLP1_P PF16575.5 gi|126465250|ref|YP_001040359.1| - 0.064 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_7 PF12775.7 gi|126465250|ref|YP_001040359.1| - 0.068 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Cytidylate_kin PF02224.18 gi|126465250|ref|YP_001040359.1| - 0.096 12.4 0.2 17 5.0 0.0 2.8 3 0 0 3 3 3 0 Cytidylate kinase LpxK PF02606.14 gi|126465250|ref|YP_001040359.1| - 0.099 11.7 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Cytidylate_kin2 PF13189.6 gi|126465250|ref|YP_001040359.1| - 0.12 12.5 0.0 2.2 8.4 0.0 2.4 1 1 1 2 2 2 0 Cytidylate kinase-like family PIF1 PF05970.14 gi|126465250|ref|YP_001040359.1| - 0.12 11.5 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase TsaE PF02367.17 gi|126465250|ref|YP_001040359.1| - 0.13 12.2 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 gi|126465250|ref|YP_001040359.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Torsin PF06309.11 gi|126465250|ref|YP_001040359.1| - 0.19 11.8 0.0 0.39 10.8 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_3 PF07726.11 gi|126465250|ref|YP_001040359.1| - 0.23 11.3 0.0 0.3 10.9 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Phosphodiest PF01663.22 gi|126465251|ref|YP_001040360.1| - 3.3e-56 191.4 0.1 4.1e-56 191.1 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|126465251|ref|YP_001040360.1| - 4.4e-05 23.0 0.0 7.6e-05 22.2 0.0 1.5 1 1 0 1 1 1 1 Sulfatase DUF229 PF02995.17 gi|126465251|ref|YP_001040360.1| - 0.009 14.7 0.0 0.013 14.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) PYC_OADA PF02436.18 gi|126465252|ref|YP_001040361.1| - 8.4e-54 182.3 0.0 1.5e-53 181.6 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|126465252|ref|YP_001040361.1| - 1e-41 143.3 0.0 1.4e-41 142.8 0.0 1.1 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|126465252|ref|YP_001040361.1| - 8.1e-20 70.4 5.7 1.7e-19 69.4 5.7 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|126465252|ref|YP_001040361.1| - 3.9e-12 45.8 1.6 2.5e-07 30.4 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|126465252|ref|YP_001040361.1| - 2e-06 28.5 0.2 0.0011 19.6 0.0 2.7 2 0 0 2 2 2 1 HlyD family secretion protein RnfC_N PF13375.6 gi|126465252|ref|YP_001040361.1| - 1.8e-05 24.6 3.1 8.5e-05 22.4 0.8 3.1 3 1 1 4 4 4 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|126465252|ref|YP_001040361.1| - 5.5e-05 22.5 0.1 0.019 14.2 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|126465252|ref|YP_001040361.1| - 0.00013 21.8 1.0 0.00027 20.8 0.5 1.8 2 0 0 2 2 1 1 Glycine cleavage H-protein ADH_zinc_N PF00107.26 gi|126465252|ref|YP_001040361.1| - 0.0013 18.7 0.1 0.083 12.9 0.0 2.9 2 1 1 3 3 3 1 Zinc-binding dehydrogenase Peptidase_M23 PF01551.22 gi|126465252|ref|YP_001040361.1| - 0.0025 18.0 0.0 0.0058 16.8 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 PTS_EIIA_1 PF00358.20 gi|126465252|ref|YP_001040361.1| - 0.036 13.8 0.2 2.8 7.7 0.1 2.6 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|126465252|ref|YP_001040361.1| - 0.057 12.8 0.9 0.25 10.8 0.5 1.9 1 1 1 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PASTA PF03793.19 gi|126465252|ref|YP_001040361.1| - 0.092 12.6 0.5 0.33 10.8 0.5 2.0 1 0 0 1 1 1 0 PASTA domain YqfD PF06898.11 gi|126465252|ref|YP_001040361.1| - 0.18 10.6 3.0 7.5 5.3 0.9 2.7 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD PYNP_C PF07831.13 gi|126465252|ref|YP_001040361.1| - 0.2 11.3 2.0 3.1 7.5 0.2 2.5 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain ABC_tran PF00005.27 gi|126465253|ref|YP_001040362.1| - 1.2e-32 113.3 0.0 1.6e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|126465253|ref|YP_001040362.1| - 1.7e-20 73.3 0.6 3.1e-20 72.5 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|126465253|ref|YP_001040362.1| - 1.8e-09 37.8 0.7 2.8e-07 30.7 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465253|ref|YP_001040362.1| - 4.2e-06 26.3 0.0 1.5e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|126465253|ref|YP_001040362.1| - 2.7e-05 24.6 0.0 0.00034 21.0 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|126465253|ref|YP_001040362.1| - 8e-05 22.5 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|126465253|ref|YP_001040362.1| - 0.00015 22.1 0.7 0.0009 19.5 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126465253|ref|YP_001040362.1| - 0.0037 17.7 0.1 0.022 15.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|126465253|ref|YP_001040362.1| - 0.0046 16.4 0.2 0.26 10.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_5 PF07728.14 gi|126465253|ref|YP_001040362.1| - 0.022 14.7 0.2 0.26 11.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|126465253|ref|YP_001040362.1| - 0.029 13.9 0.0 6.2 6.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|126465253|ref|YP_001040362.1| - 0.043 14.0 0.0 0.57 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|126465253|ref|YP_001040362.1| - 0.072 11.7 0.0 0.3 9.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|126465253|ref|YP_001040362.1| - 0.079 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|126465253|ref|YP_001040362.1| - 0.13 12.0 0.1 0.23 11.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|126465253|ref|YP_001040362.1| - 0.14 11.4 0.6 2.3 7.5 0.2 2.3 2 0 0 2 2 2 0 KaiC ATP-synt_ab PF00006.25 gi|126465253|ref|YP_001040362.1| - 0.18 11.5 0.0 0.24 11.0 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.26 gi|126465253|ref|YP_001040362.1| - 0.2 11.3 0.1 8.7 6.0 0.1 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|126465254|ref|YP_001040363.1| - 1.4e-24 87.1 0.0 2.1e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|126465254|ref|YP_001040363.1| - 4.7e-21 75.1 0.2 8.9e-21 74.2 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|126465254|ref|YP_001040363.1| - 1.5e-08 34.8 0.0 3.1e-06 27.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465254|ref|YP_001040363.1| - 0.0031 17.0 0.2 0.046 13.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|126465254|ref|YP_001040363.1| - 0.0055 16.4 0.1 0.0074 16.0 0.1 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.6 gi|126465254|ref|YP_001040363.1| - 0.0079 16.5 1.2 0.079 13.2 1.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126465254|ref|YP_001040363.1| - 0.015 15.7 1.7 0.91 10.0 1.7 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|126465254|ref|YP_001040363.1| - 0.052 14.0 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|126465254|ref|YP_001040363.1| - 0.086 12.8 0.1 0.16 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Herpes_ori_bp PF02399.15 gi|126465254|ref|YP_001040363.1| - 0.13 10.3 0.1 0.17 9.9 0.1 1.1 1 0 0 1 1 1 0 Origin of replication binding protein Mg_chelatase PF01078.21 gi|126465254|ref|YP_001040363.1| - 0.14 11.5 0.0 0.78 9.1 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|126465254|ref|YP_001040363.1| - 0.15 11.5 0.1 0.29 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 gi|126465254|ref|YP_001040363.1| - 0.18 11.5 0.0 16 5.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|126465254|ref|YP_001040363.1| - 0.22 11.2 0.2 1.1 9.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein GETHR PF05671.11 gi|126465254|ref|YP_001040363.1| - 0.33 10.3 1.9 0.66 9.4 1.9 1.4 1 0 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) BPD_transp_1 PF00528.22 gi|126465255|ref|YP_001040364.1| - 1.1e-31 110.1 11.6 1.1e-31 110.1 11.6 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|126465255|ref|YP_001040364.1| - 3.3e-08 33.4 2.9 3.3e-08 33.4 2.9 4.0 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|126465256|ref|YP_001040365.1| - 6.8e-43 146.6 15.6 6.8e-43 146.6 15.6 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PAP2_3 PF14378.6 gi|126465256|ref|YP_001040365.1| - 0.03 14.0 0.8 0.03 14.0 0.8 3.0 2 1 2 4 4 4 0 PAP2 superfamily SBP_bac_5 PF00496.22 gi|126465257|ref|YP_001040366.1| - 2e-65 221.2 7.8 2e-65 221.2 7.8 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF1206 PF06724.11 gi|126465257|ref|YP_001040366.1| - 0.11 12.6 0.7 0.43 10.7 0.1 2.3 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1206) SpoIIIAH PF12685.7 gi|126465257|ref|YP_001040366.1| - 0.13 12.1 0.1 0.18 11.6 0.1 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Mucin PF01456.17 gi|126465257|ref|YP_001040366.1| - 4.5 7.3 32.8 7.9 6.5 32.8 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein Glycoprotein PF03409.15 gi|126465257|ref|YP_001040366.1| - 9.6 4.9 21.9 19 3.9 21.9 1.4 1 0 0 1 1 1 0 Transmembrane glycoprotein Radical_SAM PF04055.21 gi|126465260|ref|YP_001040369.1| - 3.7e-09 37.2 0.2 2.1e-08 34.7 0.1 1.9 1 1 1 2 2 2 1 Radical SAM superfamily DUF1091 PF06477.13 gi|126465260|ref|YP_001040369.1| - 0.063 13.8 0.7 0.13 12.8 0.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1091) DUF1848 PF08902.11 gi|126465260|ref|YP_001040369.1| - 0.068 12.9 6.7 9.4 5.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Nre_N PF04894.12 gi|126465261|ref|YP_001040370.1| - 7e-111 370.4 0.4 1.3e-110 369.5 0.1 1.6 2 0 0 2 2 2 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|126465261|ref|YP_001040370.1| - 2.6e-37 127.1 0.1 4.1e-37 126.5 0.1 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal HTH_20 PF12840.7 gi|126465262|ref|YP_001040371.1| - 2.8e-08 33.7 0.0 5.8e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|126465262|ref|YP_001040371.1| - 0.017 15.1 0.2 0.075 13.0 0.1 2.2 1 1 1 2 2 2 0 Winged helix-turn-helix DUF2154 PF09922.9 gi|126465262|ref|YP_001040371.1| - 0.022 14.6 0.8 0.069 13.0 0.5 2.0 1 1 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF HxlR PF01638.17 gi|126465262|ref|YP_001040371.1| - 0.038 13.8 0.0 0.084 12.7 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|126465262|ref|YP_001040371.1| - 0.061 12.9 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fer4_15 PF13459.6 gi|126465263|ref|YP_001040372.1| - 2.9e-17 63.2 2.0 3.3e-17 63.0 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126465263|ref|YP_001040372.1| - 5.2e-16 58.9 1.2 6.6e-16 58.6 1.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_10 PF13237.6 gi|126465263|ref|YP_001040372.1| - 9.8e-05 22.4 1.8 0.00066 19.8 2.2 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126465263|ref|YP_001040372.1| - 0.0068 16.2 10.0 0.039 13.8 1.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126465263|ref|YP_001040372.1| - 0.028 15.0 4.0 0.49 11.0 0.9 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF2114 PF09887.9 gi|126465263|ref|YP_001040372.1| - 0.036 12.6 0.0 0.036 12.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2114) Fer4_21 PF14697.6 gi|126465263|ref|YP_001040372.1| - 0.04 14.0 4.1 0.28 11.3 4.1 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465263|ref|YP_001040372.1| - 0.047 13.8 0.7 0.047 13.8 0.7 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126465263|ref|YP_001040372.1| - 0.049 14.1 0.4 0.093 13.2 0.4 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126465263|ref|YP_001040372.1| - 0.083 13.0 2.2 0.083 13.0 2.2 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|126465263|ref|YP_001040372.1| - 0.25 11.5 2.6 6 7.0 2.6 2.1 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Itfg2 PF15907.5 gi|126465264|ref|YP_001040373.1| - 0.0011 18.1 0.0 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 Integrin-alpha FG-GAP repeat-containing protein 2 Mucin PF01456.17 gi|126465264|ref|YP_001040373.1| - 0.0012 18.9 24.2 0.0017 18.4 24.2 1.3 1 0 0 1 1 1 1 Mucin-like glycoprotein BBS2_Mid PF14783.6 gi|126465264|ref|YP_001040373.1| - 0.0014 18.6 0.1 0.0035 17.4 0.0 1.6 1 1 0 1 1 1 1 Ciliary BBSome complex subunit 2, middle region SWI-SNF_Ssr4 PF08549.10 gi|126465264|ref|YP_001040373.1| - 0.0058 15.3 0.8 0.0064 15.2 0.8 1.0 1 0 0 1 1 1 1 Fungal domain of unknown function (DUF1750) Stevor PF17410.2 gi|126465264|ref|YP_001040373.1| - 0.0065 16.1 3.1 0.0077 15.8 3.1 1.1 1 0 0 1 1 1 1 Subtelomeric Variable Open Reading frame VCBS PF13517.6 gi|126465264|ref|YP_001040373.1| - 0.007 16.9 1.3 0.03 14.9 0.0 2.0 1 1 1 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|126465264|ref|YP_001040373.1| - 0.011 15.8 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 FG-GAP repeat RIFIN PF02009.16 gi|126465264|ref|YP_001040373.1| - 0.012 15.5 4.0 0.013 15.4 4.0 1.1 1 0 0 1 1 1 0 Rifin Atrophin-1 PF03154.15 gi|126465264|ref|YP_001040373.1| - 0.019 13.3 1.2 0.023 13.0 1.2 1.0 1 0 0 1 1 1 0 Atrophin-1 family PQQ_3 PF13570.6 gi|126465264|ref|YP_001040373.1| - 0.056 14.0 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 PQQ-like domain DUF4519 PF15012.6 gi|126465264|ref|YP_001040373.1| - 0.3 11.3 3.6 0.53 10.5 3.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) Med3 PF11593.8 gi|126465264|ref|YP_001040373.1| - 2.1 7.5 14.0 2.5 7.2 14.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Dicty_REP PF05086.12 gi|126465264|ref|YP_001040373.1| - 2.2 6.1 9.3 2.6 5.9 9.3 1.0 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein FSA_C PF10479.9 gi|126465264|ref|YP_001040373.1| - 4.9 5.2 11.5 5.7 4.9 11.5 1.1 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus PALP PF00291.25 gi|126465265|ref|YP_001040374.1| - 1.7e-67 227.9 0.0 1.9e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABM PF03992.16 gi|126465265|ref|YP_001040374.1| - 0.066 13.3 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase FAD_binding_5 PF00941.21 gi|126465266|ref|YP_001040375.1| - 8.3e-26 90.7 0.0 1.2e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|126465266|ref|YP_001040375.1| - 2.3e-13 50.2 0.0 4.1e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Lip_prot_lig_C PF10437.9 gi|126465266|ref|YP_001040375.1| - 0.014 15.3 0.0 0.041 13.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus DUF2996 PF11210.8 gi|126465266|ref|YP_001040375.1| - 0.05 14.1 0.0 0.2 12.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2996) Fer2_2 PF01799.20 gi|126465267|ref|YP_001040376.1| - 4.6e-24 84.2 0.0 7.4e-24 83.6 0.0 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|126465267|ref|YP_001040376.1| - 3.5e-09 36.5 0.9 1.1e-08 34.9 0.2 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|126465267|ref|YP_001040376.1| - 3.3e-05 23.9 0.3 6.6e-05 22.9 0.3 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|126465267|ref|YP_001040376.1| - 0.0031 17.5 0.6 0.04 14.0 0.6 2.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|126465268|ref|YP_001040377.1| - 3.1e-179 597.0 0.0 4.1e-179 596.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|126465268|ref|YP_001040377.1| - 6.2e-27 94.1 0.5 1.2e-26 93.2 0.5 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PHD_like PF12910.7 gi|126465270|ref|YP_001040379.1| - 0.04 13.9 1.1 0.049 13.7 1.0 1.3 1 1 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system SMC_N PF02463.19 gi|126465271|ref|YP_001040380.1| - 0.0098 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF711 PF05167.12 gi|126465273|ref|YP_001040382.1| - 1.4e-31 109.8 0.0 6.3e-26 91.2 0.0 2.0 1 1 1 2 2 2 2 Uncharacterised ACR (DUF711) ABC_tran PF00005.27 gi|126465274|ref|YP_001040383.1| - 3.2e-27 95.7 0.0 4.4e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465274|ref|YP_001040383.1| - 1.7e-12 47.8 0.0 9.5e-06 25.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465274|ref|YP_001040383.1| - 3.3e-06 26.7 0.0 0.012 15.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|126465274|ref|YP_001040383.1| - 0.00047 19.8 0.0 0.00074 19.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|126465274|ref|YP_001040383.1| - 0.00053 20.5 0.1 0.0011 19.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|126465274|ref|YP_001040383.1| - 0.0036 16.9 0.1 0.0063 16.1 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|126465274|ref|YP_001040383.1| - 0.0083 16.5 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|126465274|ref|YP_001040383.1| - 0.0085 15.8 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 gi|126465274|ref|YP_001040383.1| - 0.0086 15.2 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|126465274|ref|YP_001040383.1| - 0.026 14.3 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|126465274|ref|YP_001040383.1| - 0.028 14.6 0.0 0.51 10.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|126465274|ref|YP_001040383.1| - 0.051 13.9 0.1 0.14 12.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|126465274|ref|YP_001040383.1| - 0.051 14.0 0.1 1.7 9.0 0.1 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|126465274|ref|YP_001040383.1| - 0.068 13.1 1.4 0.15 11.9 0.2 2.0 2 1 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|126465274|ref|YP_001040383.1| - 0.069 12.3 0.1 0.15 11.2 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|126465274|ref|YP_001040383.1| - 0.078 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF3584 PF12128.8 gi|126465274|ref|YP_001040383.1| - 0.084 10.4 0.3 0.11 10.0 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_18 PF13238.6 gi|126465274|ref|YP_001040383.1| - 0.13 12.8 1.0 6.1 7.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|126465274|ref|YP_001040383.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ZnuA PF01297.17 gi|126465275|ref|YP_001040384.1| - 1.5e-17 63.9 0.3 2.2e-17 63.3 0.3 1.2 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic PucR PF07905.11 gi|126465275|ref|YP_001040384.1| - 0.025 14.8 0.0 0.044 14.1 0.0 1.4 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family ABC-3 PF00950.17 gi|126465276|ref|YP_001040385.1| - 1.9e-19 70.2 33.5 2.5e-19 69.8 33.5 1.2 1 0 0 1 1 1 1 ABC 3 transport family RHH_1 PF01402.21 gi|126465277|ref|YP_001040386.1| - 9.5e-09 34.9 0.2 2.4e-08 33.6 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|126465277|ref|YP_001040386.1| - 1.1e-06 28.5 0.0 2.1e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|126465277|ref|YP_001040386.1| - 0.00086 19.4 0.1 0.0023 18.1 0.0 1.8 1 1 0 1 1 1 1 NikR C terminal nickel binding domain Imm19 PF15563.6 gi|126465277|ref|YP_001040386.1| - 0.031 13.8 0.1 0.036 13.5 0.1 1.2 1 0 0 1 1 1 0 Immunity protein 19 HicB_lk_antitox PF15919.5 gi|126465277|ref|YP_001040386.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.6 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|126465277|ref|YP_001040386.1| - 0.073 13.0 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Methyltransf_11 PF08241.12 gi|126465278|ref|YP_001040387.1| - 4.7e-06 27.2 0.0 0.00014 22.4 0.0 2.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465278|ref|YP_001040387.1| - 1.8e-05 25.4 0.0 5.4e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|126465278|ref|YP_001040387.1| - 2.1e-05 24.1 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|126465278|ref|YP_001040387.1| - 0.00052 19.4 0.0 0.0015 17.9 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|126465278|ref|YP_001040387.1| - 0.0014 18.2 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|126465278|ref|YP_001040387.1| - 0.0017 18.0 0.0 0.0024 17.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|126465278|ref|YP_001040387.1| - 0.0021 17.9 0.0 0.0036 17.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|126465278|ref|YP_001040387.1| - 0.025 14.0 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|126465278|ref|YP_001040387.1| - 0.043 13.6 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|126465278|ref|YP_001040387.1| - 0.047 13.4 0.0 1.5 8.4 0.0 2.4 2 0 0 2 2 2 0 DNA methylase Methyltransf_23 PF13489.6 gi|126465278|ref|YP_001040387.1| - 0.17 11.7 0.0 0.83 9.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|126465278|ref|YP_001040387.1| - 0.18 12.8 0.0 0.52 11.3 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_30 PF05430.11 gi|126465278|ref|YP_001040387.1| - 0.2 11.6 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Q_salvage PF10343.9 gi|126465280|ref|YP_001040389.1| - 0.0028 17.3 0.0 0.012 15.2 0.0 1.9 2 0 0 2 2 2 1 Potential Queuosine, Q, salvage protein family HD PF01966.22 gi|126465282|ref|YP_001040391.1| - 0.00013 22.1 0.2 0.0002 21.5 0.2 1.4 1 0 0 1 1 1 1 HD domain RNA12 PF10443.9 gi|126465282|ref|YP_001040391.1| - 0.01 14.6 0.1 0.27 9.9 0.0 2.0 2 0 0 2 2 2 0 RNA12 protein EPF PF17181.4 gi|126465283|ref|YP_001040392.1| - 0.086 12.9 0.8 0.2 11.7 0.5 1.7 2 0 0 2 2 2 0 Epidermal patterning factor proteins PA14 PF07691.12 gi|126465284|ref|YP_001040393.1| - 6.2e-14 52.0 0.0 8e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|126465284|ref|YP_001040393.1| - 0.00047 20.5 0.1 0.00077 19.8 0.1 1.4 1 0 0 1 1 1 1 GLEYA domain Mem_trans PF03547.18 gi|126465285|ref|YP_001040394.1| - 3.4e-09 35.6 29.2 6.3e-06 24.8 10.5 2.1 1 1 1 2 2 2 2 Membrane transport protein EamA PF00892.20 gi|126465286|ref|YP_001040395.1| - 2e-18 66.9 22.7 2.4e-18 66.6 22.7 1.1 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|126465286|ref|YP_001040395.1| - 0.0014 17.8 4.0 0.0014 17.8 4.0 1.5 1 1 0 1 1 1 1 Magnesium transporter NIPA Methyltr_RsmB-F PF01189.17 gi|126465287|ref|YP_001040396.1| - 3.5e-64 216.1 0.0 5.1e-64 215.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|126465287|ref|YP_001040396.1| - 1.1e-09 38.3 0.0 1.7e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|126465287|ref|YP_001040396.1| - 5.5e-08 33.2 0.0 1.2e-07 32.1 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|126465287|ref|YP_001040396.1| - 1.2e-07 32.0 0.0 2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|126465287|ref|YP_001040396.1| - 0.0019 18.9 0.0 0.0076 16.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.16 gi|126465287|ref|YP_001040396.1| - 0.038 13.3 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Fibrillarin PF01269.17 gi|126465287|ref|YP_001040396.1| - 0.074 12.2 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin NusB PF01029.18 gi|126465287|ref|YP_001040396.1| - 0.076 13.3 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 NusB family Ubie_methyltran PF01209.18 gi|126465287|ref|YP_001040396.1| - 0.11 11.8 0.0 0.69 9.2 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family GCD14 PF08704.10 gi|126465287|ref|YP_001040396.1| - 0.18 11.4 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Polysacc_deac_1 PF01522.21 gi|126465288|ref|YP_001040397.1| - 2.7e-18 66.1 0.0 4.9e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|126465288|ref|YP_001040397.1| - 3.5e-09 36.6 0.1 7.4e-09 35.6 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF296 PF03479.15 gi|126465289|ref|YP_001040398.1| - 8e-22 77.7 0.1 1e-21 77.3 0.1 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain Aminotran_5 PF00266.19 gi|126465290|ref|YP_001040399.1| - 4.8e-139 463.4 0.0 5.5e-139 463.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|126465290|ref|YP_001040399.1| - 4.1e-10 39.5 0.0 6.4e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|126465290|ref|YP_001040399.1| - 1.5e-08 33.6 0.4 8.2e-08 31.2 0.2 2.0 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|126465290|ref|YP_001040399.1| - 1.8e-06 27.5 0.0 3.2e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|126465290|ref|YP_001040399.1| - 0.00078 18.5 0.1 0.0023 17.0 0.1 1.8 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase PalH PF08733.10 gi|126465290|ref|YP_001040399.1| - 0.015 14.3 0.1 0.027 13.5 0.0 1.5 2 0 0 2 2 2 0 PalH/RIM21 ALS2CR8 PF15299.6 gi|126465290|ref|YP_001040399.1| - 0.11 12.4 0.3 0.3 11.0 0.1 1.9 2 1 0 2 2 2 0 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 DUF3369 PF11849.8 gi|126465290|ref|YP_001040399.1| - 0.16 12.1 0.1 0.46 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3369) Amidohydro_1 PF01979.20 gi|126465292|ref|YP_001040401.1| - 3.6e-67 227.1 0.1 4.2e-67 226.9 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126465292|ref|YP_001040401.1| - 2.1e-15 57.2 0.5 2.3e-12 47.1 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|126465292|ref|YP_001040401.1| - 0.2 11.0 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase Adenine_deam_C PF13382.6 gi|126465293|ref|YP_001040402.1| - 1.4e-62 210.0 0.1 2.2e-62 209.4 0.1 1.4 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|126465293|ref|YP_001040402.1| - 7.5e-23 81.4 0.2 2.3e-21 76.5 0.2 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126465293|ref|YP_001040402.1| - 8.9e-09 35.3 0.6 0.00048 19.7 0.2 2.9 3 0 0 3 3 3 2 Amidohydrolase family zf-ZPR1 PF03367.13 gi|126465294|ref|YP_001040403.1| - 3.3e-30 105.1 0.0 4e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|126465294|ref|YP_001040403.1| - 0.00028 20.3 0.5 0.45 10.1 0.1 3.2 3 0 0 3 3 3 2 TFIIB zinc-binding UPF0547 PF10571.9 gi|126465294|ref|YP_001040403.1| - 0.0013 18.7 0.6 0.066 13.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|126465294|ref|YP_001040403.1| - 0.0079 16.2 0.4 0.019 15.0 0.1 1.7 2 0 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|126465294|ref|YP_001040403.1| - 0.011 15.4 1.2 4.1 7.3 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|126465294|ref|YP_001040403.1| - 0.011 15.1 0.9 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-ISL3 PF14690.6 gi|126465294|ref|YP_001040403.1| - 0.02 15.5 0.3 8.7 7.1 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.16 gi|126465294|ref|YP_001040403.1| - 0.027 14.5 2.6 0.33 11.0 0.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF983 PF06170.12 gi|126465294|ref|YP_001040403.1| - 0.028 14.8 0.2 2.2 8.7 0.0 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF983) HypA PF01155.19 gi|126465294|ref|YP_001040403.1| - 0.029 14.4 0.1 0.055 13.5 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ogr_Delta PF04606.12 gi|126465294|ref|YP_001040403.1| - 0.038 14.0 0.4 1.1 9.3 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc-ribbons_6 PF07191.12 gi|126465294|ref|YP_001040403.1| - 0.038 14.0 0.3 0.41 10.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|126465294|ref|YP_001040403.1| - 0.04 13.3 3.1 1.9 8.0 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|126465294|ref|YP_001040403.1| - 0.041 14.0 0.9 5.2 7.3 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|126465294|ref|YP_001040403.1| - 0.047 14.0 1.2 0.76 10.1 0.1 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase OrfB_Zn_ribbon PF07282.11 gi|126465294|ref|YP_001040403.1| - 0.052 13.5 2.2 1.7 8.6 0.1 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DiS_P_DiS PF06750.13 gi|126465294|ref|YP_001040403.1| - 0.065 13.3 0.7 0.12 12.5 0.2 1.6 2 0 0 2 2 1 0 Bacterial Peptidase A24 N-terminal domain PhnA_Zn_Ribbon PF08274.12 gi|126465294|ref|YP_001040403.1| - 0.076 13.0 1.8 4.5 7.3 0.1 2.7 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.11 gi|126465294|ref|YP_001040403.1| - 0.086 12.5 2.6 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|126465294|ref|YP_001040403.1| - 0.098 12.0 4.0 0.43 10.0 3.0 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.6 gi|126465294|ref|YP_001040403.1| - 0.12 12.2 0.2 3.3 7.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|126465294|ref|YP_001040403.1| - 0.16 11.9 2.6 2.7 8.0 2.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|126465294|ref|YP_001040403.1| - 0.22 11.4 6.0 0.46 10.4 0.0 3.5 4 0 0 4 4 4 0 Rad50 zinc hook motif zf_UBZ PF18439.1 gi|126465294|ref|YP_001040403.1| - 1.3 8.7 3.6 23 4.7 0.1 2.9 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|126465294|ref|YP_001040403.1| - 1.6 8.8 7.2 2.9 7.9 0.2 2.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|126465294|ref|YP_001040403.1| - 3.5 7.5 6.6 3.4 7.5 0.2 2.8 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Radical_SAM PF04055.21 gi|126465295|ref|YP_001040404.1| - 5.6e-12 46.4 0.0 5.9e-11 43.0 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|126465295|ref|YP_001040404.1| - 1.6e-09 37.9 2.0 0.00051 19.8 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) SIS PF01380.22 gi|126465296|ref|YP_001040405.1| - 3.2e-18 65.9 0.1 5.9e-18 65.0 0.1 1.5 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|126465296|ref|YP_001040405.1| - 3.3e-12 46.6 2.2 1.8e-08 34.5 0.5 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|126465296|ref|YP_001040405.1| - 0.0015 18.4 1.6 0.68 9.8 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase adh_short PF00106.25 gi|126465296|ref|YP_001040405.1| - 0.03 13.8 0.6 0.44 10.0 0.4 2.4 1 1 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|126465296|ref|YP_001040405.1| - 0.061 12.7 1.9 1.6 8.1 0.5 2.2 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RasGAP_C PF03836.15 gi|126465297|ref|YP_001040406.1| - 0.067 13.3 1.8 0.12 12.5 1.8 1.6 1 1 0 1 1 1 0 RasGAP C-terminus Gal4_dimer PF03902.13 gi|126465298|ref|YP_001040407.1| - 0.08 13.1 1.0 0.18 12.0 1.0 1.7 1 0 0 1 1 1 0 Gal4-like dimerisation domain ArsA_ATPase PF02374.15 gi|126465298|ref|YP_001040407.1| - 0.16 11.1 1.1 0.2 10.8 1.1 1.1 1 0 0 1 1 1 0 Anion-transporting ATPase CCDC53 PF10152.9 gi|126465298|ref|YP_001040407.1| - 0.27 11.6 1.9 0.4 11.1 1.9 1.3 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex Syntaxin-6_N PF09177.11 gi|126465298|ref|YP_001040407.1| - 0.49 11.0 2.3 11 6.6 0.3 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal QueT PF06177.11 gi|126465300|ref|YP_001040409.1| - 4e-32 111.5 16.7 4.5e-32 111.3 16.7 1.0 1 0 0 1 1 1 1 QueT transporter ABC_tran PF00005.27 gi|126465301|ref|YP_001040410.1| - 3.2e-22 79.5 0.0 5e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465301|ref|YP_001040410.1| - 2.9e-11 43.8 0.9 2e-05 24.6 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465301|ref|YP_001040410.1| - 2.7e-06 27.0 0.0 0.00055 19.4 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126465301|ref|YP_001040410.1| - 0.0006 19.5 0.1 0.0016 18.2 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|126465301|ref|YP_001040410.1| - 0.0011 19.0 0.0 0.0017 18.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126465301|ref|YP_001040410.1| - 0.0016 18.9 0.1 0.29 11.7 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|126465301|ref|YP_001040410.1| - 0.002 18.7 1.1 0.0038 17.8 1.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|126465301|ref|YP_001040410.1| - 0.0055 16.5 0.0 0.012 15.4 0.1 1.5 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|126465301|ref|YP_001040410.1| - 0.0063 16.4 0.2 0.015 15.2 0.2 1.5 1 0 0 1 1 1 1 NACHT domain AAA_27 PF13514.6 gi|126465301|ref|YP_001040410.1| - 0.0073 15.9 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|126465301|ref|YP_001040410.1| - 0.013 15.0 0.1 0.027 14.1 0.0 1.5 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|126465301|ref|YP_001040410.1| - 0.014 15.1 0.0 0.036 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|126465301|ref|YP_001040410.1| - 0.019 15.4 0.0 0.037 14.4 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|126465301|ref|YP_001040410.1| - 0.025 13.7 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|126465301|ref|YP_001040410.1| - 0.06 13.7 0.1 0.16 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|126465301|ref|YP_001040410.1| - 0.072 13.1 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|126465301|ref|YP_001040410.1| - 0.072 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|126465301|ref|YP_001040410.1| - 0.08 12.5 0.1 0.14 11.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|126465301|ref|YP_001040410.1| - 0.085 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|126465301|ref|YP_001040410.1| - 0.087 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126465301|ref|YP_001040410.1| - 0.087 13.1 0.1 0.74 10.1 0.2 2.1 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126465301|ref|YP_001040410.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|126465301|ref|YP_001040410.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|126465301|ref|YP_001040410.1| - 0.14 11.3 0.2 0.24 10.5 0.2 1.3 1 1 0 1 1 1 0 G-protein alpha subunit SbcCD_C PF13558.6 gi|126465301|ref|YP_001040410.1| - 0.17 12.1 0.1 1.5 9.1 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 gi|126465301|ref|YP_001040410.1| - 0.18 11.4 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|126465301|ref|YP_001040410.1| - 0.25 8.8 0.2 0.32 8.4 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|126465301|ref|YP_001040410.1| - 0.31 9.6 0.0 0.59 8.7 0.1 1.4 2 0 0 2 2 2 0 AAA domain Herpes_U47 PF05467.11 gi|126465302|ref|YP_001040411.1| - 0.22 9.6 1.0 0.29 9.2 1.0 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein U47 AhpC-TSA PF00578.21 gi|126465303|ref|YP_001040412.1| - 6.5e-38 129.4 0.1 7.5e-38 129.2 0.1 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|126465303|ref|YP_001040412.1| - 4.2e-23 81.7 0.0 4.8e-23 81.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|126465303|ref|YP_001040412.1| - 0.00012 21.7 0.0 0.00014 21.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|126465303|ref|YP_001040412.1| - 0.00013 22.1 0.0 0.00017 21.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.14 gi|126465303|ref|YP_001040412.1| - 0.0082 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|126465303|ref|YP_001040412.1| - 0.057 13.0 0.0 0.093 12.3 0.0 1.4 1 1 0 1 1 1 0 Glutathione peroxidase DUF5309 PF17236.2 gi|126465303|ref|YP_001040412.1| - 0.067 12.5 0.0 0.067 12.5 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5309) Thioredoxin_8 PF13905.6 gi|126465303|ref|YP_001040412.1| - 0.1 12.9 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like Peptidase_M29 PF02073.15 gi|126465304|ref|YP_001040413.1| - 2.5e-108 362.5 0.0 2.8e-108 362.3 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) TPR_19 PF14559.6 gi|126465305|ref|YP_001040414.1| - 0.00011 22.7 2.5 0.51 10.9 0.1 4.2 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126465305|ref|YP_001040414.1| - 0.00072 20.0 8.2 0.5 11.1 0.3 5.2 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126465305|ref|YP_001040414.1| - 0.00086 19.9 1.1 0.036 14.7 0.1 2.6 3 1 1 4 4 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126465305|ref|YP_001040414.1| - 0.0073 16.4 14.0 1.6 9.1 0.4 5.3 4 0 0 4 4 4 2 Tetratricopeptide repeat HEPN_STY4199 PF18729.1 gi|126465305|ref|YP_001040414.1| - 0.012 14.9 0.2 0.021 14.0 0.2 1.4 1 0 0 1 1 1 0 STY4199-like HEPN TPR_20 PF14561.6 gi|126465305|ref|YP_001040414.1| - 0.026 14.8 0.1 0.14 12.6 0.1 2.2 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126465305|ref|YP_001040414.1| - 0.046 14.0 12.1 0.36 11.1 0.2 5.0 4 1 2 6 6 6 0 Tetratricopeptide repeat YfdX PF10938.8 gi|126465305|ref|YP_001040414.1| - 0.085 12.8 4.2 7.9 6.4 0.1 3.2 3 0 0 3 3 3 0 YfdX protein TPR_7 PF13176.6 gi|126465305|ref|YP_001040414.1| - 0.12 12.4 0.4 0.97 9.6 0.1 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF357 PF04010.13 gi|126465305|ref|YP_001040414.1| - 0.15 12.2 3.2 0.79 9.8 0.2 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF357) Ribosomal_L22 PF00237.19 gi|126465305|ref|YP_001040414.1| - 0.18 12.1 11.2 0.69 10.2 3.8 3.5 3 1 0 3 3 3 0 Ribosomal protein L22p/L17e DUF1722 PF08349.11 gi|126465305|ref|YP_001040414.1| - 1 9.7 13.9 0.47 10.8 0.2 4.3 3 1 1 4 4 4 0 Protein of unknown function (DUF1722) CitG PF01874.16 gi|126465306|ref|YP_001040415.1| - 4e-58 197.3 0.0 4.5e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase MtrF PF09472.10 gi|126465306|ref|YP_001040415.1| - 0.075 12.4 0.0 0.2 11.0 0.0 1.7 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) ATP_bind_3 PF01171.20 gi|126465307|ref|YP_001040416.1| - 4.8e-16 59.1 0.0 1.8e-15 57.2 0.0 1.9 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|126465307|ref|YP_001040416.1| - 1.5e-05 24.0 0.0 3e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|126465307|ref|YP_001040416.1| - 2.5e-05 23.7 3.8 0.00018 21.0 1.3 2.5 2 0 0 2 2 2 1 RecR protein PAPS_reduct PF01507.19 gi|126465307|ref|YP_001040416.1| - 0.0013 18.8 0.0 0.0056 16.7 0.0 2.0 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|126465307|ref|YP_001040416.1| - 0.0067 16.0 0.0 0.18 11.2 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|126465307|ref|YP_001040416.1| - 0.01 15.0 0.0 0.028 13.5 0.0 1.7 2 0 0 2 2 2 0 NAD synthase ThiI PF02568.14 gi|126465307|ref|YP_001040416.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Vps36-NZF-N PF16988.5 gi|126465307|ref|YP_001040416.1| - 0.019 14.4 1.2 0.72 9.3 0.0 2.6 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain C1_2 PF03107.16 gi|126465307|ref|YP_001040416.1| - 0.03 14.6 0.5 0.26 11.7 0.2 2.2 2 0 0 2 2 2 0 C1 domain zn-ribbon_14 PF16503.5 gi|126465307|ref|YP_001040416.1| - 1.3 8.6 8.1 0.33 10.5 3.7 2.1 2 0 0 2 2 2 0 Zinc-ribbon zf-C4_ClpX PF06689.13 gi|126465307|ref|YP_001040416.1| - 4.3 7.3 7.4 8.9 6.3 0.2 3.1 3 0 0 3 3 3 0 ClpX C4-type zinc finger PAPS_reduct PF01507.19 gi|126465308|ref|YP_001040417.1| - 1.3e-34 119.8 0.0 2.3e-34 119.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|126465308|ref|YP_001040417.1| - 0.024 13.8 0.0 0.046 12.8 0.0 1.4 1 0 0 1 1 1 0 NAD synthase QueC PF06508.13 gi|126465308|ref|YP_001040417.1| - 0.072 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ADK PF00406.22 gi|126465309|ref|YP_001040418.1| - 3.8e-51 173.2 0.0 4.6e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|126465309|ref|YP_001040418.1| - 4.5e-24 85.4 0.0 8.3e-24 84.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK_lid PF05191.14 gi|126465309|ref|YP_001040418.1| - 2e-15 56.5 2.8 3.2e-15 55.8 2.8 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|126465309|ref|YP_001040418.1| - 1.4e-07 32.1 0.0 2.5e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|126465309|ref|YP_001040418.1| - 1.7e-05 25.2 0.0 0.031 14.6 0.0 2.1 2 0 0 2 2 2 2 Hydin Adenylate kinase-like domain TF_Zn_Ribbon PF08271.12 gi|126465309|ref|YP_001040418.1| - 0.00039 19.9 1.3 0.00098 18.6 0.8 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding AAA_33 PF13671.6 gi|126465309|ref|YP_001040418.1| - 0.0037 17.4 0.0 0.0054 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|126465309|ref|YP_001040418.1| - 0.0096 15.7 0.0 0.021 14.6 0.0 1.4 1 1 0 1 1 1 1 Cytidylate kinase Thymidylate_kin PF02223.17 gi|126465309|ref|YP_001040418.1| - 0.034 13.8 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 Thymidylate kinase AAA_28 PF13521.6 gi|126465309|ref|YP_001040418.1| - 0.072 13.3 0.0 0.23 11.7 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|126465309|ref|YP_001040418.1| - 0.091 13.0 0.0 0.23 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|126465309|ref|YP_001040418.1| - 0.095 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) HTH_AsnC-type PF13404.6 gi|126465311|ref|YP_001040420.1| - 9.6e-11 41.3 0.6 1.5e-10 40.7 0.6 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|126465311|ref|YP_001040420.1| - 8.3e-09 34.9 0.8 1.6e-08 33.9 0.8 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|126465311|ref|YP_001040420.1| - 4e-05 23.5 0.2 8.1e-05 22.5 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|126465311|ref|YP_001040420.1| - 0.0022 17.8 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|126465311|ref|YP_001040420.1| - 0.0043 17.5 0.1 0.0096 16.4 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|126465311|ref|YP_001040420.1| - 0.0065 16.3 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|126465311|ref|YP_001040420.1| - 0.0086 16.1 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 gi|126465311|ref|YP_001040420.1| - 0.01 15.5 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|126465311|ref|YP_001040420.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain MarR PF01047.22 gi|126465311|ref|YP_001040420.1| - 0.011 15.6 0.1 0.029 14.3 0.0 1.7 2 0 0 2 2 2 0 MarR family DUF2089 PF09862.9 gi|126465311|ref|YP_001040420.1| - 0.016 15.2 0.0 0.027 14.5 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_27 PF13463.6 gi|126465311|ref|YP_001040420.1| - 0.02 15.4 0.1 0.047 14.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|126465311|ref|YP_001040420.1| - 0.036 14.2 0.0 0.11 12.7 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|126465311|ref|YP_001040420.1| - 0.041 13.8 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 gi|126465311|ref|YP_001040420.1| - 0.045 13.2 0.1 0.066 12.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_50 PF18024.1 gi|126465311|ref|YP_001040420.1| - 0.056 13.1 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|126465311|ref|YP_001040420.1| - 0.086 12.7 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_29 PF13551.6 gi|126465311|ref|YP_001040420.1| - 0.086 12.9 0.0 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix GntR PF00392.21 gi|126465311|ref|YP_001040420.1| - 0.087 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|126465311|ref|YP_001040420.1| - 0.09 13.0 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|126465311|ref|YP_001040420.1| - 0.12 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain CSN8_PSD8_EIF3K PF10075.9 gi|126465311|ref|YP_001040420.1| - 0.15 12.1 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 CSN8/PSMD8/EIF3K family NMD3 PF04981.13 gi|126465312|ref|YP_001040421.1| - 1.1e-40 139.6 0.0 1.3e-40 139.4 0.0 1.0 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|126465312|ref|YP_001040421.1| - 0.071 13.2 5.2 7.7 6.6 3.8 3.0 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|126465312|ref|YP_001040421.1| - 3.1 7.6 11.5 0.99 9.2 0.5 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DUF485 PF04341.12 gi|126465314|ref|YP_001040423.1| - 1.2 9.1 8.6 0.58 10.1 3.8 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF485 ABC_tran PF00005.27 gi|126465315|ref|YP_001040424.1| - 5.1e-28 98.3 0.0 8.5e-28 97.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465315|ref|YP_001040424.1| - 8.3e-12 45.5 2.7 6.4e-06 26.2 0.2 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126465315|ref|YP_001040424.1| - 0.00011 22.7 0.1 0.00026 21.5 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|126465315|ref|YP_001040424.1| - 0.0003 20.6 0.0 0.0011 18.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|126465315|ref|YP_001040424.1| - 0.00051 19.5 0.2 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|126465315|ref|YP_001040424.1| - 0.0008 19.4 0.2 0.0017 18.3 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|126465315|ref|YP_001040424.1| - 0.0024 17.6 0.1 0.0043 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126465315|ref|YP_001040424.1| - 0.0024 17.8 0.8 0.02 14.8 0.0 2.1 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|126465315|ref|YP_001040424.1| - 0.0028 17.4 0.0 0.0051 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126465315|ref|YP_001040424.1| - 0.0031 17.9 0.0 0.0066 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|126465315|ref|YP_001040424.1| - 0.0034 17.4 0.4 0.54 10.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|126465315|ref|YP_001040424.1| - 0.0035 16.1 0.1 0.0053 15.5 0.1 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|126465315|ref|YP_001040424.1| - 0.013 14.6 0.0 0.026 13.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DLIC PF05783.11 gi|126465315|ref|YP_001040424.1| - 0.039 12.8 0.0 0.055 12.3 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NACHT PF05729.12 gi|126465315|ref|YP_001040424.1| - 0.045 13.7 0.6 0.13 12.2 0.2 1.8 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|126465315|ref|YP_001040424.1| - 0.071 13.1 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|126465315|ref|YP_001040424.1| - 0.095 13.1 0.7 0.28 11.6 0.1 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|126465315|ref|YP_001040424.1| - 0.11 12.1 0.4 0.19 11.3 0.4 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|126465315|ref|YP_001040424.1| - 0.11 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|126465315|ref|YP_001040424.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|126465315|ref|YP_001040424.1| - 0.15 11.5 0.1 0.44 9.9 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|126465315|ref|YP_001040424.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|126465315|ref|YP_001040424.1| - 0.18 9.3 0.1 0.25 8.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TrmO PF01980.16 gi|126465316|ref|YP_001040425.1| - 7.9e-28 97.1 0.0 1.3e-27 96.4 0.0 1.3 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF962 PF06127.11 gi|126465317|ref|YP_001040426.1| - 0.027 14.5 3.9 0.027 14.5 3.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF962) Meckelin PF09773.9 gi|126465317|ref|YP_001040426.1| - 0.07 11.2 2.9 0.085 10.9 2.9 1.1 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) MerC PF03203.14 gi|126465317|ref|YP_001040426.1| - 5.1 7.6 18.0 0.44 11.0 7.0 2.6 1 1 0 2 2 2 0 MerC mercury resistance protein Radical_SAM PF04055.21 gi|126465318|ref|YP_001040427.1| - 1.1e-14 55.2 0.1 3.3e-12 47.1 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465318|ref|YP_001040427.1| - 1e-05 25.8 0.3 2.5e-05 24.6 0.2 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126465318|ref|YP_001040427.1| - 6.8e-05 23.0 0.5 0.0027 17.8 0.2 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain zf-C2HC_2 PF13913.6 gi|126465318|ref|YP_001040427.1| - 9.2 6.3 9.2 26 4.8 1.1 3.1 3 0 0 3 3 3 0 zinc-finger of a C2HC-type TauE PF01925.19 gi|126465319|ref|YP_001040428.1| - 6.8e-54 183.0 29.8 7.8e-54 182.8 29.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Apq12 PF12716.7 gi|126465319|ref|YP_001040428.1| - 3 7.8 6.7 8.3 6.5 0.7 3.5 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis BTP PF05232.12 gi|126465319|ref|YP_001040428.1| - 5.4 7.2 8.5 4.3 7.5 0.4 3.3 2 2 1 3 3 3 0 Chlorhexidine efflux transporter DUF1634 PF07843.11 gi|126465320|ref|YP_001040429.1| - 0.00034 20.6 19.6 0.0025 17.9 11.2 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF1634) TMEM238 PF15125.6 gi|126465320|ref|YP_001040429.1| - 0.0013 18.9 9.4 0.0013 18.9 9.4 1.9 1 1 1 2 2 2 1 TMEM238 protein family Peptidase_S9 PF00326.21 gi|126465321|ref|YP_001040430.1| - 9.1e-56 188.7 0.0 1.3e-55 188.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|126465321|ref|YP_001040430.1| - 3.4e-11 43.2 0.1 3.9e-08 33.2 0.2 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|126465321|ref|YP_001040430.1| - 6.4e-10 38.2 0.0 2.8e-08 32.8 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|126465321|ref|YP_001040430.1| - 8.2e-08 32.2 0.1 1.1e-06 28.5 0.1 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold PD40 PF07676.12 gi|126465321|ref|YP_001040430.1| - 9.9e-07 28.6 8.6 0.091 12.7 0.0 5.0 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|126465321|ref|YP_001040430.1| - 1.5e-06 27.3 1.3 0.059 12.1 0.1 3.8 3 1 1 4 4 4 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.18 gi|126465321|ref|YP_001040430.1| - 2.3e-05 24.0 0.0 6.4e-05 22.6 0.0 1.7 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|126465321|ref|YP_001040430.1| - 7.3e-05 22.1 0.0 0.051 12.7 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.8 gi|126465321|ref|YP_001040430.1| - 0.00028 20.2 0.0 0.4 9.9 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|126465321|ref|YP_001040430.1| - 0.00062 20.4 0.0 0.0011 19.6 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|126465321|ref|YP_001040430.1| - 0.0023 17.8 0.0 0.41 10.5 0.0 2.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold ANAPC4_WD40 PF12894.7 gi|126465321|ref|YP_001040430.1| - 0.1 12.9 0.0 19 5.6 0.0 2.9 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Kelch_3 PF13415.6 gi|126465321|ref|YP_001040430.1| - 0.12 12.7 1.0 0.76 10.1 0.1 2.7 3 0 0 3 3 3 0 Galactose oxidase, central domain MatE PF01554.18 gi|126465322|ref|YP_001040431.1| - 6.1e-53 178.8 38.1 4.4e-29 101.2 11.2 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|126465322|ref|YP_001040431.1| - 5.2e-09 36.3 6.8 5.2e-09 36.3 6.8 4.5 1 1 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MtrH PF02007.18 gi|126465323|ref|YP_001040432.1| - 1.3e-41 142.7 0.0 1.7e-41 142.3 0.0 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit RACo_C_ter PF14574.6 gi|126465324|ref|YP_001040433.1| - 3.4e-54 183.6 0.0 6.4e-54 182.7 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of RACo the ASKHA domain Raco_middle PF17651.1 gi|126465324|ref|YP_001040433.1| - 5.6e-23 81.4 0.5 1.4e-21 76.9 0.2 2.9 2 1 0 2 2 2 1 RACo middle region Fer2 PF00111.27 gi|126465324|ref|YP_001040433.1| - 4.1e-06 26.7 0.3 7.6e-06 25.8 0.3 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pan_kinase PF03309.14 gi|126465324|ref|YP_001040433.1| - 0.13 12.1 0.2 0.61 9.9 0.0 2.1 3 0 0 3 3 3 0 Type III pantothenate kinase B12-binding PF02310.19 gi|126465325|ref|YP_001040434.1| - 2.4e-26 92.1 0.9 3.9e-26 91.5 0.9 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.17 gi|126465325|ref|YP_001040434.1| - 4.5e-15 55.9 2.0 5.4e-15 55.6 0.3 2.1 2 1 0 2 2 2 1 B12 binding domain NIR_SIR PF01077.22 gi|126465325|ref|YP_001040434.1| - 0.07 12.6 0.1 0.084 12.4 0.1 1.2 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain AF2331-like PF14556.6 gi|126465325|ref|YP_001040434.1| - 0.093 13.3 0.3 12 6.6 0.0 2.4 2 0 0 2 2 2 0 AF2331-like Meth_synt_2 PF01717.18 gi|126465326|ref|YP_001040435.1| - 0.00035 19.9 0.0 0.00076 18.8 0.0 1.5 2 0 0 2 2 2 1 Cobalamin-independent synthase, Catalytic domain MTHFR PF02219.17 gi|126465327|ref|YP_001040436.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase ThiS PF02597.20 gi|126465328|ref|YP_001040437.1| - 2e-12 47.6 0.0 2.2e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|126465328|ref|YP_001040437.1| - 0.056 13.5 0.3 0.12 12.4 0.1 1.7 1 1 1 2 2 2 0 ThiS-like ubiquitin INCENP_N PF12178.8 gi|126465328|ref|YP_001040437.1| - 0.11 12.5 0.2 0.2 11.7 0.2 1.4 1 0 0 1 1 1 0 Chromosome passenger complex (CPC) protein INCENP N terminal Ub-Mut7C PF14451.6 gi|126465328|ref|YP_001040437.1| - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin Macro PF01661.21 gi|126465329|ref|YP_001040438.1| - 1.8e-24 86.0 0.0 2.9e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|126465329|ref|YP_001040438.1| - 2.2e-06 27.3 0.2 4.2e-05 23.0 0.2 2.1 1 1 0 1 1 1 1 Macro-like domain PEP-CTERM PF07589.11 gi|126465329|ref|YP_001040438.1| - 0.047 13.8 0.4 0.12 12.5 0.4 1.7 1 0 0 1 1 1 0 PEP-CTERM motif Glyco_trans_1_4 PF13692.6 gi|126465330|ref|YP_001040439.1| - 5.2e-09 36.6 0.0 8.7e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126465330|ref|YP_001040439.1| - 6.9e-08 32.7 0.4 1.8e-07 31.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|126465330|ref|YP_001040439.1| - 0.0022 17.6 0.0 0.0046 16.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|126465330|ref|YP_001040439.1| - 0.026 15.0 0.0 0.067 13.6 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Methyltr_RsmF_N PF17125.5 gi|126465331|ref|YP_001040440.1| - 0.012 16.1 0.1 0.027 14.9 0.0 1.7 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF muHD PF10291.9 gi|126465331|ref|YP_001040440.1| - 0.095 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Muniscin C-terminal mu homology domain Methyltr_RsmB-F PF01189.17 gi|126465332|ref|YP_001040441.1| - 6.5e-06 25.9 0.0 6.5e-06 25.9 0.0 1.0 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|126465332|ref|YP_001040441.1| - 0.078 13.1 0.0 0.078 13.1 0.0 1.0 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|126465333|ref|YP_001040442.1| - 2.9e-05 23.8 0.0 3.1e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F SPA PF08616.10 gi|126465335|ref|YP_001040444.1| - 0.00085 19.3 0.8 0.0019 18.1 0.8 1.6 1 0 0 1 1 1 1 Stabilization of polarity axis RIFIN PF02009.16 gi|126465335|ref|YP_001040444.1| - 0.006 16.5 3.9 0.0089 16.0 3.9 1.3 1 0 0 1 1 1 1 Rifin Orf78 PF06024.12 gi|126465335|ref|YP_001040444.1| - 0.11 12.8 0.2 0.11 12.8 0.2 2.1 2 0 0 2 2 2 0 Orf78 (ac78) ThrE PF06738.12 gi|126465336|ref|YP_001040445.1| - 0.00014 21.3 2.4 0.00014 21.3 2.4 1.8 2 1 0 2 2 2 1 Putative threonine/serine exporter PAP2 PF01569.21 gi|126465336|ref|YP_001040445.1| - 0.0014 18.4 19.0 0.052 13.3 19.0 2.7 1 1 0 1 1 1 1 PAP2 superfamily DNA_primase_lrg PF04104.14 gi|126465337|ref|YP_001040446.1| - 3e-36 125.2 0.9 4.4e-36 124.7 0.9 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Ribosomal_S6 PF01250.17 gi|126465337|ref|YP_001040446.1| - 0.0054 17.0 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S6 LpxC PF03331.13 gi|126465337|ref|YP_001040446.1| - 0.068 12.7 0.3 0.2 11.1 0.2 1.7 1 1 1 2 2 2 0 UDP-3-O-acyl N-acetylglycosamine deacetylase MarR_2 PF12802.7 gi|126465339|ref|YP_001040448.1| - 2.7e-08 33.6 0.0 5.2e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|126465339|ref|YP_001040448.1| - 4.5e-07 29.3 0.1 1.1e-06 28.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|126465339|ref|YP_001040448.1| - 1.6e-06 27.8 0.0 2.9e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|126465339|ref|YP_001040448.1| - 2.9e-05 23.9 0.1 7.5e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|126465339|ref|YP_001040448.1| - 4.5e-05 23.9 0.1 8.7e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|126465339|ref|YP_001040448.1| - 0.00022 21.1 0.0 0.00052 19.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|126465339|ref|YP_001040448.1| - 0.013 15.4 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126465339|ref|YP_001040448.1| - 0.026 14.6 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF5412 PF17428.2 gi|126465340|ref|YP_001040449.1| - 0.031 14.1 1.6 0.11 12.4 1.6 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5412) MGC-24 PF05283.11 gi|126465340|ref|YP_001040449.1| - 0.04 14.4 11.9 0.095 13.2 11.9 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Mucin PF01456.17 gi|126465340|ref|YP_001040449.1| - 0.17 11.8 39.4 0.19 11.7 38.0 1.8 2 0 0 2 2 2 0 Mucin-like glycoprotein DUF2577 PF10844.8 gi|126465340|ref|YP_001040449.1| - 1.3 9.3 4.5 3.1 8.1 4.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2577) Alpha_GJ PF03229.13 gi|126465340|ref|YP_001040449.1| - 3.7 8.1 14.8 5.4 7.6 14.8 1.3 1 0 0 1 1 1 0 Alphavirus glycoprotein J MarC PF01914.17 gi|126465341|ref|YP_001040450.1| - 0.045 13.1 0.1 0.11 11.9 0.1 1.6 1 0 0 1 1 1 0 MarC family integral membrane protein FANCI_HD2 PF14680.6 gi|126465342|ref|YP_001040451.1| - 0.027 13.7 0.0 0.042 13.1 0.0 1.2 1 0 0 1 1 1 0 FANCI helical domain 2 Carb_kinase PF01256.17 gi|126465343|ref|YP_001040452.1| - 4.2e-49 167.2 0.0 7.5e-49 166.4 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|126465343|ref|YP_001040452.1| - 5.3e-40 137.1 0.0 1.1e-39 136.1 0.0 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|126465343|ref|YP_001040452.1| - 3e-05 23.5 0.2 8.8e-05 22.0 0.1 1.7 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Flavoprotein PF02441.19 gi|126465343|ref|YP_001040452.1| - 0.026 14.3 0.0 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 Flavoprotein Glyco_tran_WecB PF03808.13 gi|126465343|ref|YP_001040452.1| - 0.064 13.2 0.0 1.8 8.5 0.0 2.9 3 1 1 4 4 4 0 Glycosyl transferase WecB/TagA/CpsF family Peptidase_S8 PF00082.22 gi|126465344|ref|YP_001040453.1| - 7.1e-29 101.0 9.4 6.1e-22 78.2 1.2 3.3 2 1 0 3 3 3 2 Subtilase family Big_1 PF02369.16 gi|126465344|ref|YP_001040453.1| - 7.8e-20 70.6 1.7 6.3e-06 26.1 0.0 8.6 10 0 0 10 10 10 4 Bacterial Ig-like domain (group 1) Big_3_5 PF16640.5 gi|126465344|ref|YP_001040453.1| - 2e-16 60.0 29.6 0.01 16.0 2.9 7.8 8 0 0 8 8 8 6 Bacterial Ig-like domain (group 3) Transthyretin PF00576.21 gi|126465344|ref|YP_001040453.1| - 1.9e-05 25.3 0.2 16 6.2 0.1 5.1 2 2 3 5 5 5 1 HIUase/Transthyretin family Invasin_D3 PF09134.10 gi|126465344|ref|YP_001040453.1| - 0.039 14.2 4.2 0.38 11.1 0.5 3.8 4 0 0 4 4 4 0 Invasin, domain 3 BatA PF07584.11 gi|126465344|ref|YP_001040453.1| - 0.67 10.4 3.0 1.9 8.9 3.0 1.7 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal BNR PF02012.20 gi|126465344|ref|YP_001040453.1| - 0.74 10.0 2.9 1.8 8.9 0.6 3.0 2 0 0 2 2 2 0 BNR/Asp-box repeat CxxCxxCC PF03692.15 gi|126465345|ref|YP_001040454.1| - 2.1e-11 44.3 0.2 3.6e-11 43.6 0.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Bac_DNA_binding PF00216.21 gi|126465346|ref|YP_001040455.1| - 0.0096 16.1 1.9 0.78 10.0 0.3 2.3 1 1 1 2 2 2 2 Bacterial DNA-binding protein Cnd1 PF12717.7 gi|126465346|ref|YP_001040455.1| - 0.02 15.0 0.1 0.028 14.5 0.1 1.2 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 RapH_N PF18801.1 gi|126465346|ref|YP_001040455.1| - 0.047 13.8 0.8 0.1 12.7 0.0 1.9 2 0 0 2 2 2 0 response regulator aspartate phosphatase H, N terminal DUF2680 PF10925.8 gi|126465346|ref|YP_001040455.1| - 0.054 13.5 0.1 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) BtpA PF03437.15 gi|126465347|ref|YP_001040456.1| - 3.3e-69 233.1 0.0 3.7e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 BtpA family PcrB PF01884.17 gi|126465347|ref|YP_001040456.1| - 0.0033 16.9 0.2 0.0063 16.0 0.2 1.5 1 0 0 1 1 1 1 PcrB family DUF4129 PF13559.6 gi|126465348|ref|YP_001040457.1| - 6.1e-07 29.6 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CLTH PF10607.9 gi|126465348|ref|YP_001040457.1| - 0.032 14.1 0.4 0.058 13.3 0.4 1.5 1 1 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain Tetraspanin PF00335.20 gi|126465348|ref|YP_001040457.1| - 0.064 13.0 0.2 0.39 10.4 0.1 1.9 2 0 0 2 2 2 0 Tetraspanin family Vps54_N PF10475.9 gi|126465348|ref|YP_001040457.1| - 0.99 8.6 5.6 0.19 11.0 2.0 1.6 2 0 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex DUF4350 PF14258.6 gi|126465349|ref|YP_001040458.1| - 0.0062 16.9 0.0 0.017 15.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) DUF2619 PF10942.8 gi|126465349|ref|YP_001040458.1| - 0.07 13.2 0.1 0.3 11.2 0.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2619) EF-hand_1 PF00036.32 gi|126465349|ref|YP_001040458.1| - 0.1 12.2 0.1 0.36 10.5 0.1 2.0 1 0 0 1 1 1 0 EF hand DUF4354 PF14263.6 gi|126465349|ref|YP_001040458.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4354) AAA_3 PF07726.11 gi|126465350|ref|YP_001040459.1| - 4.4e-62 207.7 0.1 6.8e-62 207.1 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|126465350|ref|YP_001040459.1| - 1e-21 76.5 0.0 2e-21 75.6 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|126465350|ref|YP_001040459.1| - 5.9e-15 55.5 0.0 1.1e-14 54.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|126465350|ref|YP_001040459.1| - 3.7e-08 33.9 0.0 8e-08 32.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|126465350|ref|YP_001040459.1| - 4.1e-07 29.3 0.1 1.8e-06 27.2 0.1 2.1 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|126465350|ref|YP_001040459.1| - 3.4e-06 26.6 0.4 0.018 14.4 0.0 2.6 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|126465350|ref|YP_001040459.1| - 7.1e-05 22.6 0.1 0.00044 20.0 0.1 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|126465350|ref|YP_001040459.1| - 0.00016 21.4 0.0 0.033 13.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_2 PF07724.14 gi|126465350|ref|YP_001040459.1| - 0.003 17.7 0.0 0.0052 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|126465350|ref|YP_001040459.1| - 0.019 15.3 0.0 0.049 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Tombus_P33 PF08500.10 gi|126465350|ref|YP_001040459.1| - 0.13 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Tombusvirus p33 DUF58 PF01882.18 gi|126465351|ref|YP_001040460.1| - 6.3e-25 87.3 0.0 3.4e-24 84.9 0.0 2.1 2 1 0 2 2 2 1 Protein of unknown function DUF58 DUF3683 PF12447.8 gi|126465352|ref|YP_001040461.1| - 0.021 15.0 0.1 0.045 13.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3683) Phage_holin_3_6 PF07332.11 gi|126465353|ref|YP_001040462.1| - 0.015 15.3 0.6 0.017 15.1 0.6 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III COX14 PF14880.6 gi|126465353|ref|YP_001040462.1| - 0.033 14.0 0.3 2 8.3 0.0 2.1 2 0 0 2 2 2 0 Cytochrome oxidase c assembly SPC25 PF06703.11 gi|126465353|ref|YP_001040462.1| - 0.18 11.6 0.1 0.19 11.5 0.1 1.0 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) LapA_dom PF06305.11 gi|126465353|ref|YP_001040462.1| - 0.3 10.9 4.6 5.7 6.8 0.9 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain CARDB PF07705.11 gi|126465354|ref|YP_001040463.1| - 6.2e-06 26.4 0.0 2.5e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 CARDB Cupredoxin_1 PF13473.6 gi|126465354|ref|YP_001040463.1| - 0.0036 17.4 0.6 0.088 12.9 0.4 2.8 2 1 1 3 3 3 2 Cupredoxin-like domain Wzt_C PF14524.6 gi|126465354|ref|YP_001040463.1| - 0.039 14.0 0.0 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Wzt C-terminal domain tRNA_deacylase PF04414.12 gi|126465355|ref|YP_001040464.1| - 6.5e-65 218.5 0.0 7.7e-65 218.3 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase TYW3 PF02676.14 gi|126465356|ref|YP_001040465.1| - 1.1e-29 103.4 0.0 1.5e-29 102.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 ThiI PF02568.14 gi|126465357|ref|YP_001040466.1| - 2.4e-38 131.7 0.0 5.1e-38 130.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|126465357|ref|YP_001040466.1| - 1.2e-05 24.9 0.0 0.00075 19.1 0.0 2.5 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC THUMP PF02926.17 gi|126465357|ref|YP_001040466.1| - 0.00012 22.2 0.2 0.00027 21.0 0.2 1.5 1 0 0 1 1 1 1 THUMP domain tRNA_Me_trans PF03054.16 gi|126465357|ref|YP_001040466.1| - 0.00069 18.5 0.0 0.0015 17.4 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|126465357|ref|YP_001040466.1| - 0.036 13.2 0.1 0.16 11.1 0.0 1.9 2 0 0 2 2 2 0 NAD synthase tRNA_bind PF01588.20 gi|126465358|ref|YP_001040467.1| - 8.8e-27 93.1 0.0 1e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Succ_CoA_lig PF13607.6 gi|126465359|ref|YP_001040468.1| - 1.3e-52 177.2 1.3 5.8e-52 175.2 0.1 2.6 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|126465359|ref|YP_001040468.1| - 1.9e-26 92.8 0.2 5.8e-26 91.3 0.2 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|126465359|ref|YP_001040468.1| - 1.7e-18 67.0 3.4 2.6e-18 66.5 1.0 2.5 3 0 0 3 3 3 1 CoA binding domain F420_oxidored PF03807.17 gi|126465359|ref|YP_001040468.1| - 0.0046 17.5 1.3 0.089 13.4 0.3 3.3 4 0 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|126465359|ref|YP_001040468.1| - 0.012 16.4 0.1 0.46 11.3 0.0 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|126465359|ref|YP_001040468.1| - 0.068 13.1 0.4 0.47 10.4 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF4849 PF16141.5 gi|126465359|ref|YP_001040468.1| - 0.084 12.1 0.1 0.14 11.4 0.1 1.3 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 ResIII PF04851.15 gi|126465361|ref|YP_001040470.1| - 3.5e-22 79.2 0.3 4.5e-21 75.6 0.1 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|126465361|ref|YP_001040470.1| - 3.9e-19 69.0 0.3 4.9e-13 49.4 0.1 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126465361|ref|YP_001040470.1| - 4.8e-16 59.0 0.1 1.1e-15 57.8 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 gi|126465361|ref|YP_001040470.1| - 2.3e-08 33.5 0.0 4.5e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase SWI2_SNF2 PF18766.1 gi|126465361|ref|YP_001040470.1| - 0.00017 21.4 0.1 0.00061 19.5 0.0 1.9 2 0 0 2 2 2 1 SWI2/SNF2 ATPase PhoH PF02562.16 gi|126465361|ref|YP_001040470.1| - 0.00028 20.4 0.0 0.00059 19.3 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein TrmB PF01978.19 gi|126465361|ref|YP_001040470.1| - 0.0013 18.6 0.0 0.0038 17.1 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_19 PF13245.6 gi|126465361|ref|YP_001040470.1| - 0.0033 17.8 0.1 0.0089 16.4 0.1 1.7 1 0 0 1 1 1 1 AAA domain MarR_2 PF12802.7 gi|126465361|ref|YP_001040470.1| - 0.012 15.5 0.0 0.041 13.8 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|126465361|ref|YP_001040470.1| - 0.022 14.3 0.2 0.32 10.6 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|126465361|ref|YP_001040470.1| - 0.028 14.3 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|126465361|ref|YP_001040470.1| - 0.037 13.7 0.4 0.21 11.3 0.0 2.5 3 1 1 4 4 4 0 Bacterial regulatory proteins, gntR family DUF87 PF01935.17 gi|126465361|ref|YP_001040470.1| - 0.051 13.7 4.1 0.25 11.4 0.1 3.2 3 1 0 3 3 3 0 Helicase HerA, central domain Metallophos_3 PF14582.6 gi|126465364|ref|YP_001040473.1| - 4.5e-09 36.0 0.1 0.0024 17.3 0.1 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|126465364|ref|YP_001040473.1| - 0.0039 17.4 0.0 0.0041 17.3 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HAD_2 PF13419.6 gi|126465366|ref|YP_001040475.1| - 2.4e-07 31.0 0.0 3.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|126465366|ref|YP_001040475.1| - 0.00024 20.9 0.2 0.002 17.9 0.2 2.1 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase DUF2608 PF11019.8 gi|126465366|ref|YP_001040475.1| - 0.00067 19.2 1.2 0.11 12.0 0.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2608) Hydrolase PF00702.26 gi|126465366|ref|YP_001040475.1| - 0.012 16.0 0.0 0.085 13.1 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126465366|ref|YP_001040475.1| - 0.03 14.7 0.0 0.044 14.2 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126465366|ref|YP_001040475.1| - 0.16 12.1 0.1 2.3 8.4 0.1 2.3 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase QRPTase_C PF01729.19 gi|126465367|ref|YP_001040476.1| - 2e-27 96.0 0.0 2.7e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|126465367|ref|YP_001040476.1| - 8.8e-08 32.6 0.0 2.2e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|126465367|ref|YP_001040476.1| - 6.4e-06 26.1 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|126465367|ref|YP_001040476.1| - 5.3e-05 23.6 0.0 0.079 13.3 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain UPF0047 PF01894.17 gi|126465368|ref|YP_001040477.1| - 1.8e-34 118.3 0.1 2.1e-34 118.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Ribonuc_red_lgC PF02867.15 gi|126465368|ref|YP_001040477.1| - 0.084 11.4 0.0 0.098 11.2 0.0 1.1 1 0 0 1 1 1 0 Ribonucleotide reductase, barrel domain PAS_12 PF18095.1 gi|126465368|ref|YP_001040477.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 1 0 1 1 1 0 UPF0242 C-terminal PAS-like domain RibD_C PF01872.17 gi|126465369|ref|YP_001040478.1| - 5.5e-39 134.1 0.0 6.6e-39 133.8 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PK PF00224.21 gi|126465369|ref|YP_001040478.1| - 0.004 16.1 0.1 0.005 15.8 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain CE2_N PF17996.1 gi|126465369|ref|YP_001040478.1| - 0.11 12.5 0.0 1.3 9.0 0.0 2.2 1 1 1 2 2 2 0 Carbohydrate esterase 2 N-terminal ArsA_HSP20 PF17886.1 gi|126465370|ref|YP_001040479.1| - 3.9e-11 42.3 0.1 6.3e-11 41.7 0.1 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|126465370|ref|YP_001040479.1| - 4.2e-11 42.9 3.4 2.1e-09 37.5 3.4 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|126465370|ref|YP_001040479.1| - 0.00015 22.8 1.2 0.00023 22.1 1.2 1.3 1 0 0 1 1 1 1 CS domain DPCD PF14913.6 gi|126465370|ref|YP_001040479.1| - 0.0017 17.8 0.8 0.003 16.9 0.4 1.5 1 1 0 1 1 1 1 DPCD protein family GvpH PF05455.11 gi|126465370|ref|YP_001040479.1| - 0.0043 17.1 0.0 0.0059 16.7 0.0 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|126465370|ref|YP_001040479.1| - 0.027 14.9 0.2 0.041 14.3 0.2 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain Metallophos_2 PF12850.7 gi|126465371|ref|YP_001040480.1| - 1.6e-27 96.7 0.1 1.9e-27 96.5 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|126465371|ref|YP_001040480.1| - 2.7e-10 41.1 5.6 1.3e-07 32.3 2.4 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF4258 PF14076.6 gi|126465372|ref|YP_001040481.1| - 8.5e-10 38.9 0.1 1.2e-09 38.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) Forkhead PF00250.18 gi|126465372|ref|YP_001040481.1| - 0.018 15.3 0.2 0.05 13.9 0.1 1.7 1 1 1 2 2 2 0 Forkhead domain PNP_UDP_1 PF01048.20 gi|126465373|ref|YP_001040482.1| - 9.5e-39 133.0 0.2 1.2e-38 132.7 0.2 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily PfkB PF00294.24 gi|126465374|ref|YP_001040483.1| - 9.6e-35 120.3 0.0 1.2e-34 120.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase ATP-grasp_2 PF08442.10 gi|126465378|ref|YP_001040487.1| - 1.3e-58 197.9 0.1 2.8e-58 196.8 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|126465378|ref|YP_001040487.1| - 4.4e-18 65.6 0.2 7.7e-18 64.8 0.2 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|126465378|ref|YP_001040487.1| - 2.8e-09 36.8 0.5 3.2e-08 33.3 0.5 2.3 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|126465378|ref|YP_001040487.1| - 1.8e-05 24.6 0.8 3.8e-05 23.6 0.2 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAD_binding_10 PF13460.6 gi|126465378|ref|YP_001040487.1| - 0.013 15.4 0.1 0.022 14.7 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding DUF1848 PF08902.11 gi|126465378|ref|YP_001040487.1| - 0.021 14.5 0.1 0.031 14.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) Peripla_BP_4 PF13407.6 gi|126465378|ref|YP_001040487.1| - 0.023 14.3 0.0 0.09 12.3 0.0 2.0 2 1 0 2 2 2 0 Periplasmic binding protein domain CPSase_L_D2 PF02786.17 gi|126465378|ref|YP_001040487.1| - 0.04 13.4 0.1 0.072 12.6 0.1 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|126465378|ref|YP_001040487.1| - 0.059 12.9 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|126465378|ref|YP_001040487.1| - 0.06 13.1 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain CoA_binding PF02629.19 gi|126465379|ref|YP_001040488.1| - 1e-30 106.3 3.7 3.2e-30 104.7 1.7 2.3 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|126465379|ref|YP_001040488.1| - 2.5e-15 56.6 0.0 3.9e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|126465379|ref|YP_001040488.1| - 4.1e-14 52.5 0.0 3.9e-13 49.4 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|126465379|ref|YP_001040488.1| - 2.6e-07 31.2 0.0 6.2e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|126465379|ref|YP_001040488.1| - 0.0076 15.8 0.4 0.013 15.1 0.4 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Radical_SAM PF04055.21 gi|126465379|ref|YP_001040488.1| - 0.15 12.4 0.2 0.77 10.1 0.0 2.0 2 1 0 2 2 2 0 Radical SAM superfamily FUSC PF04632.12 gi|126465380|ref|YP_001040489.1| - 0.00021 20.0 0.0 0.00024 19.8 0.0 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family Fib_alpha PF08702.10 gi|126465380|ref|YP_001040489.1| - 0.0087 16.3 4.9 0.012 15.9 4.9 1.2 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|126465380|ref|YP_001040489.1| - 0.0092 16.3 3.8 0.57 10.5 0.3 2.3 1 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 CLZ PF16526.5 gi|126465380|ref|YP_001040489.1| - 0.01 16.2 5.3 0.29 11.5 0.1 2.4 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels RasGAP_C PF03836.15 gi|126465380|ref|YP_001040489.1| - 0.011 15.9 5.0 0.012 15.8 1.0 2.0 1 1 0 2 2 2 0 RasGAP C-terminus DUF1043 PF06295.12 gi|126465380|ref|YP_001040489.1| - 0.013 15.5 2.7 0.033 14.2 1.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF1993 PF09351.10 gi|126465380|ref|YP_001040489.1| - 0.013 15.7 1.7 0.28 11.3 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) FliJ PF02050.16 gi|126465380|ref|YP_001040489.1| - 0.022 15.0 1.0 0.022 15.0 1.0 1.9 2 0 0 2 2 2 0 Flagellar FliJ protein Rx_N PF18052.1 gi|126465380|ref|YP_001040489.1| - 0.032 14.5 4.2 0.1 12.9 0.7 2.1 2 0 0 2 2 2 0 Rx N-terminal domain NOG1_N PF17835.1 gi|126465380|ref|YP_001040489.1| - 0.034 14.1 1.6 2.5 8.0 0.1 2.3 1 1 0 2 2 2 0 NOG1 N-terminal helical domain DUF3375 PF11855.8 gi|126465380|ref|YP_001040489.1| - 0.037 13.0 5.5 0.88 8.4 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3375) CorA PF01544.18 gi|126465380|ref|YP_001040489.1| - 0.041 13.2 5.4 0.053 12.8 5.4 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MitMem_reg PF13012.6 gi|126465380|ref|YP_001040489.1| - 0.045 14.2 1.9 0.16 12.4 0.9 1.9 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function CK2S PF15011.6 gi|126465380|ref|YP_001040489.1| - 0.045 13.6 2.4 0.86 9.5 0.1 2.4 1 1 1 2 2 2 0 Casein Kinase 2 substrate Uds1 PF15456.6 gi|126465380|ref|YP_001040489.1| - 0.045 13.9 6.3 0.12 12.6 6.4 1.6 1 1 0 1 1 1 0 Up-regulated During Septation DciA PF05258.12 gi|126465380|ref|YP_001040489.1| - 0.046 14.1 0.2 0.084 13.3 0.2 1.5 1 1 0 1 1 1 0 Dna[CI] antecedent, DciA DASH_Dad4 PF08650.10 gi|126465380|ref|YP_001040489.1| - 0.053 13.5 2.4 0.28 11.2 0.3 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad4 HAD_SAK_1 PF10307.9 gi|126465380|ref|YP_001040489.1| - 0.073 12.9 0.3 0.1 12.4 0.3 1.4 1 0 0 1 1 1 0 HAD domain family 1 in Swiss Army Knife RNA repair proteins DUF4795 PF16043.5 gi|126465380|ref|YP_001040489.1| - 0.077 12.6 7.6 0.12 12.0 7.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Baculo_PEP_C PF04513.12 gi|126465380|ref|YP_001040489.1| - 0.079 13.0 4.3 0.6 10.1 0.7 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus V_ATPase_I PF01496.19 gi|126465380|ref|YP_001040489.1| - 0.083 10.8 1.6 0.098 10.6 1.6 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family WXG100 PF06013.12 gi|126465380|ref|YP_001040489.1| - 0.091 13.0 0.8 14 6.0 0.1 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG MutS_III PF05192.18 gi|126465380|ref|YP_001040489.1| - 0.092 13.0 2.6 0.13 12.5 2.6 1.2 1 0 0 1 1 1 0 MutS domain III YabA PF06156.13 gi|126465380|ref|YP_001040489.1| - 0.098 13.3 4.7 0.15 12.7 1.3 2.1 2 0 0 2 2 2 0 Initiation control protein YabA MnmE_helical PF12631.7 gi|126465380|ref|YP_001040489.1| - 0.13 12.5 1.6 0.17 12.1 1.6 1.2 1 0 0 1 1 1 0 MnmE helical domain Seryl_tRNA_N PF02403.22 gi|126465380|ref|YP_001040489.1| - 0.15 12.3 7.7 0.39 11.0 0.1 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|126465380|ref|YP_001040489.1| - 0.16 11.9 6.1 1.6 8.7 0.1 2.4 2 1 0 2 2 2 0 Prefoldin subunit SWI-SNF_Ssr4 PF08549.10 gi|126465380|ref|YP_001040489.1| - 0.24 10.0 3.3 0.28 9.8 3.3 1.0 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) Fzo_mitofusin PF04799.13 gi|126465380|ref|YP_001040489.1| - 0.27 10.8 6.0 3.3 7.2 1.2 2.1 1 1 1 2 2 2 0 fzo-like conserved region COG2 PF06148.11 gi|126465380|ref|YP_001040489.1| - 0.3 11.2 5.6 0.31 11.1 1.0 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TMPIT PF07851.13 gi|126465380|ref|YP_001040489.1| - 0.31 10.3 2.4 0.39 9.9 2.4 1.2 1 0 0 1 1 1 0 TMPIT-like protein OmpH PF03938.14 gi|126465380|ref|YP_001040489.1| - 0.34 11.3 7.3 0.58 10.5 7.1 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Cep57_MT_bd PF06657.13 gi|126465380|ref|YP_001040489.1| - 0.38 11.3 6.8 1 9.8 4.2 2.5 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 XhlA PF10779.9 gi|126465380|ref|YP_001040489.1| - 0.43 10.8 9.3 0.58 10.4 0.6 2.4 1 1 0 2 2 2 0 Haemolysin XhlA AATF-Che1 PF13339.6 gi|126465380|ref|YP_001040489.1| - 0.46 11.2 3.9 1.6 9.4 3.9 1.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Spc7 PF08317.11 gi|126465380|ref|YP_001040489.1| - 0.58 9.0 7.7 0.89 8.4 7.7 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein APG6_N PF17675.1 gi|126465380|ref|YP_001040489.1| - 0.74 10.4 9.8 1.6 9.2 9.8 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region FTA4 PF13093.6 gi|126465380|ref|YP_001040489.1| - 1.2 9.0 7.4 10 5.9 7.4 2.0 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF2203 PF09969.9 gi|126465380|ref|YP_001040489.1| - 1.2 9.9 4.4 6.4 7.5 4.3 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) EMP24_GP25L PF01105.24 gi|126465380|ref|YP_001040489.1| - 3.7 7.5 6.8 10 6.0 1.3 2.1 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Pyrophosphatase PF00719.19 gi|126465381|ref|YP_001040490.1| - 4.2e-60 202.2 0.1 4.7e-60 202.0 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF5622 PF18533.1 gi|126465381|ref|YP_001040490.1| - 0.061 13.5 1.5 1.8 8.7 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5622) Glucodextran_B PF09136.10 gi|126465382|ref|YP_001040491.1| - 0.022 15.1 0.1 0.087 13.2 0.0 1.9 2 0 0 2 2 2 0 Glucodextranase, domain B Lactamase_B_2 PF12706.7 gi|126465383|ref|YP_001040492.1| - 1.8e-05 24.3 0.1 7.1e-05 22.4 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|126465383|ref|YP_001040492.1| - 5.7e-05 23.0 0.0 0.00038 20.3 0.0 2.3 2 1 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|126465383|ref|YP_001040492.1| - 0.0013 18.8 0.8 0.006 16.6 0.8 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF5482 PF17579.2 gi|126465383|ref|YP_001040492.1| - 0.084 12.7 0.4 0.24 11.3 0.2 1.8 1 1 0 1 1 1 0 Family of unknown function (DUF5482) DRMBL PF07522.14 gi|126465383|ref|YP_001040492.1| - 0.12 12.6 0.0 0.43 10.8 0.0 1.9 3 0 0 3 3 3 0 DNA repair metallo-beta-lactamase Vps51 PF08700.11 gi|126465384|ref|YP_001040493.1| - 0.00076 19.5 0.9 0.00076 19.5 0.9 1.7 2 0 0 2 2 1 1 Vps51/Vps67 HSBP1 PF06825.12 gi|126465384|ref|YP_001040493.1| - 0.0018 18.1 1.1 0.0063 16.4 1.1 1.9 1 0 0 1 1 1 1 Heat shock factor binding protein 1 DUF1664 PF07889.12 gi|126465384|ref|YP_001040493.1| - 0.0019 18.2 1.1 0.0036 17.3 1.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Herpes_UL6 PF01763.16 gi|126465384|ref|YP_001040493.1| - 0.0022 16.6 0.7 0.0028 16.2 0.7 1.3 1 0 0 1 1 1 1 Herpesvirus UL6 like Rootletin PF15035.6 gi|126465384|ref|YP_001040493.1| - 0.004 17.2 1.8 0.0065 16.5 1.8 1.3 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion ApoLp-III PF07464.11 gi|126465384|ref|YP_001040493.1| - 0.0052 16.9 0.7 0.0052 16.9 0.7 1.7 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) GAS PF13851.6 gi|126465384|ref|YP_001040493.1| - 0.0084 15.5 4.2 0.0084 15.5 4.2 1.9 2 1 0 2 2 2 1 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|126465384|ref|YP_001040493.1| - 0.0091 14.9 1.9 0.013 14.4 1.9 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein Laminin_I PF06008.14 gi|126465384|ref|YP_001040493.1| - 0.0095 15.7 0.5 0.015 15.0 0.5 1.3 1 0 0 1 1 1 1 Laminin Domain I PhaP_Bmeg PF09602.10 gi|126465384|ref|YP_001040493.1| - 0.01 15.8 3.4 0.013 15.4 0.1 2.3 3 0 0 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) FapA PF03961.13 gi|126465384|ref|YP_001040493.1| - 0.011 14.4 1.9 0.012 14.3 1.9 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A FAM76 PF16046.5 gi|126465384|ref|YP_001040493.1| - 0.011 15.1 1.5 0.014 14.8 1.5 1.1 1 0 0 1 1 1 0 FAM76 protein TSC22 PF01166.18 gi|126465384|ref|YP_001040493.1| - 0.012 15.9 2.3 0.037 14.4 1.8 2.1 1 1 0 1 1 1 0 TSC-22/dip/bun family RHH_1 PF01402.21 gi|126465384|ref|YP_001040493.1| - 0.018 15.0 1.3 0.058 13.4 0.0 2.4 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Syntaxin_2 PF14523.6 gi|126465384|ref|YP_001040493.1| - 0.018 15.4 2.5 0.034 14.5 2.5 1.5 1 0 0 1 1 1 0 Syntaxin-like protein TEX12 PF15219.6 gi|126465384|ref|YP_001040493.1| - 0.031 14.6 3.8 8.6 6.8 0.0 3.3 2 1 1 3 3 3 0 Testis-expressed 12 Sec8_exocyst PF04048.14 gi|126465384|ref|YP_001040493.1| - 0.048 13.6 0.1 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain BLOC1_2 PF10046.9 gi|126465384|ref|YP_001040493.1| - 0.059 13.7 1.5 0.12 12.6 1.5 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|126465384|ref|YP_001040493.1| - 0.064 13.3 0.4 0.11 12.5 0.4 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4446 PF14584.6 gi|126465384|ref|YP_001040493.1| - 0.064 13.2 0.6 0.14 12.1 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) NPV_P10 PF05531.12 gi|126465384|ref|YP_001040493.1| - 0.069 13.6 7.0 0.059 13.8 4.3 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1465 PF07323.12 gi|126465384|ref|YP_001040493.1| - 0.074 12.9 0.5 0.12 12.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) DivIC PF04977.15 gi|126465384|ref|YP_001040493.1| - 0.12 12.1 4.3 0.15 11.8 1.8 2.3 2 1 0 2 2 2 0 Septum formation initiator MCPsignal PF00015.21 gi|126465384|ref|YP_001040493.1| - 0.15 11.8 0.3 0.2 11.5 0.3 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4665 PF15679.5 gi|126465384|ref|YP_001040493.1| - 0.17 12.6 1.9 0.44 11.2 2.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4665) Helo_like_N PF17111.5 gi|126465384|ref|YP_001040493.1| - 0.17 11.2 2.0 0.31 10.4 1.9 1.4 1 1 0 1 1 1 0 Fungal N-terminal domain of STAND proteins SlyX PF04102.12 gi|126465384|ref|YP_001040493.1| - 0.25 12.0 3.4 0.18 12.4 1.3 2.0 2 1 0 2 2 1 0 SlyX Atg14 PF10186.9 gi|126465384|ref|YP_001040493.1| - 0.41 9.7 3.1 0.61 9.1 3.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 MIP-T3_C PF17749.1 gi|126465384|ref|YP_001040493.1| - 0.49 10.4 6.9 1.9 8.4 1.7 2.4 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region S6OS1 PF15676.5 gi|126465384|ref|YP_001040493.1| - 0.62 8.5 6.5 0.98 7.8 6.4 1.4 1 1 0 1 1 1 0 Six6 opposite strand transcript 1 family Bacillus_HBL PF05791.11 gi|126465384|ref|YP_001040493.1| - 1.4 8.7 7.8 13 5.6 0.2 3.3 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) DUF4795 PF16043.5 gi|126465384|ref|YP_001040493.1| - 3.2 7.3 6.6 13 5.3 6.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) PKcGMP_CC PF16808.5 gi|126465384|ref|YP_001040493.1| - 4.7 7.1 10.1 0.33 10.9 1.0 3.2 3 0 0 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase TatD_DNase PF01026.21 gi|126465385|ref|YP_001040494.1| - 4.2e-18 65.7 0.0 5e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase AIRS PF00586.24 gi|126465386|ref|YP_001040495.1| - 6.1e-16 58.9 0.0 1.7e-15 57.4 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|126465386|ref|YP_001040495.1| - 2.9e-15 56.7 0.0 5.3e-15 55.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain TyrRSs_C PF16714.5 gi|126465386|ref|YP_001040495.1| - 0.05 13.4 0.2 0.096 12.5 0.2 1.3 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain phiKZ_IP PF12699.7 gi|126465387|ref|YP_001040496.1| - 0.046 12.8 0.2 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 phiKZ-like phage internal head proteins Snf7 PF03357.21 gi|126465388|ref|YP_001040497.1| - 0.0025 17.5 4.1 0.005 16.4 4.1 1.7 1 1 0 1 1 1 1 Snf7 DUF4125 PF13526.6 gi|126465388|ref|YP_001040497.1| - 0.038 13.6 0.3 0.07 12.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4125) LOH1CR12 PF10158.9 gi|126465388|ref|YP_001040497.1| - 0.21 11.6 1.8 0.24 11.4 0.1 2.0 3 0 0 3 3 3 0 Tumour suppressor protein DUF2175 PF09943.9 gi|126465388|ref|YP_001040497.1| - 2.3 8.6 5.1 1.3 9.4 0.2 2.6 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2175) CutA1 PF03091.15 gi|126465391|ref|YP_001040500.1| - 2.9e-36 123.3 0.2 3.3e-36 123.1 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein SCAPER_N PF16501.5 gi|126465391|ref|YP_001040500.1| - 0.013 15.5 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 S phase cyclin A-associated protein in the endoplasmic reticulum SH3_1 PF00018.28 gi|126465391|ref|YP_001040500.1| - 0.069 12.8 0.2 0.13 11.9 0.2 1.4 1 0 0 1 1 1 0 SH3 domain MG4 PF17789.1 gi|126465392|ref|YP_001040501.1| - 0.014 15.6 0.2 0.053 13.7 0.2 2.1 1 0 0 1 1 1 0 Macroglobulin domain MG4 Ribosomal_S21e PF01249.18 gi|126465392|ref|YP_001040501.1| - 0.12 12.6 0.0 0.31 11.2 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein S21e DUF4198 PF10670.9 gi|126465392|ref|YP_001040501.1| - 0.12 12.7 0.1 0.29 11.5 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) GCH_III PF05165.12 gi|126465393|ref|YP_001040502.1| - 9.5e-41 139.7 0.0 1.5e-40 139.0 0.0 1.3 1 1 0 1 1 1 1 GTP cyclohydrolase III DMRL_synthase PF00885.19 gi|126465394|ref|YP_001040503.1| - 5.2e-38 130.1 0.1 5.8e-38 129.9 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|126465395|ref|YP_001040504.1| - 2.1e-13 50.3 0.2 2.5e-13 50.1 0.2 1.2 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Nitro_FeMo-Co PF02579.17 gi|126465395|ref|YP_001040504.1| - 0.14 12.5 0.0 4.7 7.6 0.0 2.2 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor DHBP_synthase PF00926.19 gi|126465396|ref|YP_001040505.1| - 2.8e-42 144.4 0.0 3.5e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Amidohydro_1 PF01979.20 gi|126465397|ref|YP_001040506.1| - 2e-10 40.6 0.0 2.1e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|126465397|ref|YP_001040506.1| - 0.14 11.5 0.0 0.31 10.3 0.0 1.6 1 0 0 1 1 1 0 Adenosine/AMP deaminase tRNA-synt_1b PF00579.25 gi|126465398|ref|YP_001040507.1| - 3.9e-46 157.7 0.0 5.8e-46 157.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|126465398|ref|YP_001040507.1| - 0.0014 17.6 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF4392 PF14336.6 gi|126465398|ref|YP_001040507.1| - 0.087 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) OMPdecase PF00215.24 gi|126465399|ref|YP_001040508.1| - 1.5e-24 86.9 0.7 1.8e-24 86.6 0.7 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|126465399|ref|YP_001040508.1| - 4e-05 23.1 0.8 5.9e-05 22.5 0.8 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.21 gi|126465399|ref|YP_001040508.1| - 4.5e-05 23.0 0.1 6.8e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|126465399|ref|YP_001040508.1| - 5.7e-05 22.4 0.3 0.00019 20.7 0.1 1.9 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|126465399|ref|YP_001040508.1| - 0.00034 20.0 0.6 0.00059 19.2 0.5 1.4 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG PcrB PF01884.17 gi|126465399|ref|YP_001040508.1| - 0.0013 18.3 1.4 0.0013 18.2 0.4 1.5 2 0 0 2 2 2 1 PcrB family IMPDH PF00478.25 gi|126465399|ref|YP_001040508.1| - 0.0014 17.7 0.8 0.0017 17.4 0.8 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain PEP_mutase PF13714.6 gi|126465399|ref|YP_001040508.1| - 0.0026 17.3 0.1 0.06 12.8 0.0 2.4 2 1 1 3 3 3 1 Phosphoenolpyruvate phosphomutase Trp_syntA PF00290.20 gi|126465399|ref|YP_001040508.1| - 0.017 14.0 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain TMP-TENI PF02581.17 gi|126465399|ref|YP_001040508.1| - 0.017 14.4 0.3 0.029 13.7 0.3 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase PEP_hydrolase PF09370.10 gi|126465399|ref|YP_001040508.1| - 0.026 13.7 0.1 2.6 7.2 0.0 2.3 1 1 1 2 2 2 0 Phosphoenolpyruvate hydrolase-like Oxidored_nitro PF00148.19 gi|126465399|ref|YP_001040508.1| - 0.065 12.0 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase 5-FTHF_cyc-lig PF01812.20 gi|126465400|ref|YP_001040509.1| - 5.2e-36 124.3 0.0 6.2e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family polyprenyl_synt PF00348.17 gi|126465401|ref|YP_001040510.1| - 6.5e-58 195.8 0.0 9.3e-58 195.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase EcoEI_R_C PF08463.10 gi|126465401|ref|YP_001040510.1| - 0.13 12.4 1.2 0.28 11.3 1.2 1.5 1 0 0 1 1 1 0 EcoEI R protein C-terminal DUF134 PF02001.16 gi|126465402|ref|YP_001040511.1| - 8e-16 58.4 0.0 1.1e-15 58.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|126465402|ref|YP_001040511.1| - 1.4e-07 31.0 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|126465402|ref|YP_001040511.1| - 1e-06 28.1 0.0 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|126465402|ref|YP_001040511.1| - 0.0017 18.4 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_psq PF05225.16 gi|126465402|ref|YP_001040511.1| - 0.0022 17.7 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_31 PF13560.6 gi|126465402|ref|YP_001040511.1| - 0.0061 16.9 0.1 0.0084 16.4 0.1 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|126465402|ref|YP_001040511.1| - 0.0062 16.3 0.0 0.0083 15.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|126465402|ref|YP_001040511.1| - 0.0092 16.1 0.1 0.017 15.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|126465402|ref|YP_001040511.1| - 0.02 14.8 0.0 0.023 14.6 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor HTH_8 PF02954.19 gi|126465402|ref|YP_001040511.1| - 0.065 13.0 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_10 PF04967.12 gi|126465402|ref|YP_001040511.1| - 0.15 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.6 gi|126465402|ref|YP_001040511.1| - 0.15 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|126465402|ref|YP_001040511.1| - 0.25 11.5 0.0 0.28 11.3 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase MJ1316 PF04457.12 gi|126465403|ref|YP_001040512.1| - 4.2e-10 40.2 0.7 4.9e-10 40.0 0.7 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain ELFV_dehydrog PF00208.21 gi|126465404|ref|YP_001040513.1| - 7.4e-78 261.6 0.9 9.8e-78 261.2 0.9 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|126465404|ref|YP_001040513.1| - 4.6e-53 178.6 0.0 8.2e-53 177.7 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|126465404|ref|YP_001040513.1| - 4.2e-05 23.0 0.6 6.7e-05 22.3 0.6 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|126465404|ref|YP_001040513.1| - 0.0024 18.0 1.0 0.0052 16.9 0.8 1.6 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.12 gi|126465404|ref|YP_001040513.1| - 0.008 13.7 0.0 0.011 13.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.12 gi|126465404|ref|YP_001040513.1| - 0.053 13.1 0.3 0.11 12.1 0.3 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|126465404|ref|YP_001040513.1| - 0.091 13.2 0.1 0.18 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|126465404|ref|YP_001040513.1| - 0.095 12.8 0.2 0.28 11.2 0.2 1.8 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Dimerisation PF08100.11 gi|126465404|ref|YP_001040513.1| - 0.13 12.3 0.0 0.88 9.6 0.0 2.5 2 0 0 2 2 2 0 Dimerisation domain Osmo_MPGsynth PF09488.10 gi|126465405|ref|YP_001040514.1| - 5.9e-153 509.2 0.0 6.7e-153 509.0 0.0 1.0 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Hydrolase_3 PF08282.12 gi|126465406|ref|YP_001040515.1| - 4.7e-19 69.1 9.3 6.3e-19 68.7 9.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|126465406|ref|YP_001040515.1| - 0.0012 18.4 0.0 1 8.8 0.0 2.2 1 1 1 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|126465406|ref|YP_001040515.1| - 0.029 14.5 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126465406|ref|YP_001040515.1| - 0.057 13.7 0.0 0.71 10.1 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase AdoMet_dc PF02675.15 gi|126465407|ref|YP_001040516.1| - 8.3e-33 112.8 0.0 9.4e-33 112.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DS PF01916.17 gi|126465408|ref|YP_001040517.1| - 3.4e-93 312.1 0.1 3.9e-93 311.9 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase GLF PF03275.13 gi|126465408|ref|YP_001040517.1| - 0.021 14.6 0.5 0.033 13.9 0.5 1.4 1 0 0 1 1 1 0 UDP-galactopyranose mutase SWC7 PF17330.2 gi|126465408|ref|YP_001040517.1| - 0.11 12.6 0.8 0.39 10.8 0.2 2.1 1 1 1 2 2 2 0 SWR1 chromatin-remodelling complex, sub-unit Swc7 Radical_SAM PF04055.21 gi|126465410|ref|YP_001040519.1| - 2.4e-11 44.3 0.3 6.6e-11 42.9 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Isochorismatase PF00857.20 gi|126465411|ref|YP_001040520.1| - 8e-50 169.4 0.0 8.9e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family ABC_tran PF00005.27 gi|126465413|ref|YP_001040522.1| - 3.7e-26 92.3 0.0 4.9e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465413|ref|YP_001040522.1| - 1.4e-12 48.0 0.6 2.3e-05 24.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|126465413|ref|YP_001040522.1| - 1.2e-06 28.5 0.1 2.1e-05 24.4 0.2 2.1 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|126465413|ref|YP_001040522.1| - 2.9e-05 23.6 0.1 0.00065 19.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|126465413|ref|YP_001040522.1| - 4.1e-05 24.2 0.9 7.3e-05 23.3 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|126465413|ref|YP_001040522.1| - 5.3e-05 23.3 0.2 0.0029 17.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|126465413|ref|YP_001040522.1| - 0.00014 22.1 0.9 0.0032 17.7 0.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126465413|ref|YP_001040522.1| - 0.00025 21.5 0.0 0.00035 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|126465413|ref|YP_001040522.1| - 0.00048 20.6 0.0 0.0008 19.8 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|126465413|ref|YP_001040522.1| - 0.00052 19.8 0.0 0.00078 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|126465413|ref|YP_001040522.1| - 0.00056 19.9 0.0 0.0012 18.8 0.0 1.6 1 1 1 2 2 2 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|126465413|ref|YP_001040522.1| - 0.00066 19.7 0.1 0.00091 19.2 0.1 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|126465413|ref|YP_001040522.1| - 0.001 18.8 0.2 0.0022 17.7 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|126465413|ref|YP_001040522.1| - 0.0047 16.2 0.0 0.0072 15.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|126465413|ref|YP_001040522.1| - 0.0065 16.2 0.0 0.0085 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 gi|126465413|ref|YP_001040522.1| - 0.0088 15.0 0.1 0.016 14.2 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_18 PF13238.6 gi|126465413|ref|YP_001040522.1| - 0.009 16.6 0.3 0.047 14.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126465413|ref|YP_001040522.1| - 0.01 15.8 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|126465413|ref|YP_001040522.1| - 0.012 15.3 0.2 0.022 14.4 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|126465413|ref|YP_001040522.1| - 0.014 15.4 1.3 0.029 14.3 0.1 1.9 2 0 0 2 2 2 0 NACHT domain AAA_27 PF13514.6 gi|126465413|ref|YP_001040522.1| - 0.019 14.6 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|126465413|ref|YP_001040522.1| - 0.025 13.8 0.0 0.032 13.4 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain ATP-synt_ab PF00006.25 gi|126465413|ref|YP_001040522.1| - 0.03 14.0 0.0 0.039 13.6 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TsaE PF02367.17 gi|126465413|ref|YP_001040522.1| - 0.034 14.1 0.1 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MCM PF00493.23 gi|126465413|ref|YP_001040522.1| - 0.066 12.3 0.1 0.13 11.3 0.1 1.5 1 0 0 1 1 1 0 MCM P-loop domain ABC_ATPase PF09818.9 gi|126465413|ref|YP_001040522.1| - 0.077 11.8 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class G-alpha PF00503.20 gi|126465413|ref|YP_001040522.1| - 0.092 11.9 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_28 PF13521.6 gi|126465413|ref|YP_001040522.1| - 0.1 12.9 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|126465413|ref|YP_001040522.1| - 0.11 12.6 0.0 0.32 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|126465413|ref|YP_001040522.1| - 0.12 12.2 0.1 0.24 11.2 0.1 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase SRP54 PF00448.22 gi|126465413|ref|YP_001040522.1| - 0.12 12.0 0.2 0.2 11.3 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|126465413|ref|YP_001040522.1| - 0.16 10.6 0.1 0.23 10.1 0.1 1.1 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|126465413|ref|YP_001040522.1| - 0.21 9.1 0.2 0.27 8.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.6 gi|126465413|ref|YP_001040522.1| - 0.25 11.7 0.7 0.57 10.5 0.7 1.9 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|126465414|ref|YP_001040523.1| - 3.6e-60 203.6 36.7 4.4e-60 203.3 36.7 1.1 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|126465415|ref|YP_001040524.1| - 2.9e-23 82.7 0.2 3.9e-23 82.3 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF999 PF06198.11 gi|126465415|ref|YP_001040524.1| - 0.0097 15.9 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF999) TMEM154 PF15102.6 gi|126465415|ref|YP_001040524.1| - 0.024 14.6 4.2 0.044 13.7 4.2 1.4 1 0 0 1 1 1 0 TMEM154 protein family Glycophorin_A PF01102.18 gi|126465415|ref|YP_001040524.1| - 0.033 14.4 1.1 0.14 12.4 0.7 2.0 2 0 0 2 2 2 0 Glycophorin A DUF4366 PF14283.6 gi|126465415|ref|YP_001040524.1| - 0.041 13.9 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Transposase_mut PF00872.18 gi|126465415|ref|YP_001040524.1| - 0.22 10.4 0.0 0.32 9.8 0.0 1.1 1 0 0 1 1 1 0 Transposase, Mutator family Dicty_REP PF05086.12 gi|126465415|ref|YP_001040524.1| - 0.25 9.3 9.1 0.39 8.6 9.1 1.2 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein AJAP1_PANP_C PF15298.6 gi|126465415|ref|YP_001040524.1| - 2 8.6 14.3 0.82 9.8 11.9 1.5 2 0 0 2 2 2 0 AJAP1/PANP C-terminus TP_methylase PF00590.20 gi|126465416|ref|YP_001040525.1| - 2.8e-24 86.3 0.0 3.3e-24 86.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TMEM220 PF15071.6 gi|126465417|ref|YP_001040526.1| - 1.9 9.3 9.2 0.23 12.2 1.3 3.1 2 1 0 3 3 3 0 Transmembrane family 220, helix AA_kinase PF00696.28 gi|126465418|ref|YP_001040527.1| - 2.2e-27 96.2 0.0 2.6e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Radical_SAM PF04055.21 gi|126465421|ref|YP_001040530.1| - 8.8e-08 32.7 1.5 5.4e-07 30.1 0.3 2.8 3 1 0 3 3 3 1 Radical SAM superfamily DUF1848 PF08902.11 gi|126465421|ref|YP_001040530.1| - 0.027 14.2 1.4 4.3 7.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF2795 PF11387.8 gi|126465421|ref|YP_001040530.1| - 0.052 13.8 0.6 14 5.9 0.0 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2795) Glyco_trans_1_4 PF13692.6 gi|126465422|ref|YP_001040531.1| - 7.3e-05 23.2 0.0 0.00012 22.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|126465422|ref|YP_001040531.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 UPF0102 PF02021.17 gi|126465423|ref|YP_001040532.1| - 0.00017 21.7 0.6 0.00017 21.7 0.6 2.0 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 HTH_Crp_2 PF13545.6 gi|126465423|ref|YP_001040532.1| - 0.0059 16.6 0.1 0.013 15.4 0.1 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain Dodecin PF07311.12 gi|126465423|ref|YP_001040532.1| - 0.006 16.8 0.6 0.017 15.4 0.6 1.8 1 0 0 1 1 1 1 Dodecin MarR PF01047.22 gi|126465423|ref|YP_001040532.1| - 0.013 15.4 0.0 0.04 13.8 0.0 1.9 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|126465423|ref|YP_001040532.1| - 0.02 14.5 0.1 0.065 12.8 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Penicillinase_R PF03965.16 gi|126465423|ref|YP_001040532.1| - 0.02 15.3 3.2 0.49 10.8 0.9 2.4 1 1 1 2 2 2 0 Penicillinase repressor DUF3791 PF12668.7 gi|126465423|ref|YP_001040532.1| - 0.04 14.0 3.1 0.059 13.4 0.1 2.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3791) BCDHK_Adom3 PF10436.9 gi|126465423|ref|YP_001040532.1| - 0.043 13.6 0.6 0.066 13.1 0.6 1.3 1 0 0 1 1 1 0 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase SfsA PF03749.13 gi|126465423|ref|YP_001040532.1| - 0.06 13.2 0.4 0.33 10.8 0.1 2.1 2 0 0 2 2 2 0 Sugar fermentation stimulation protein RE domain MarR_2 PF12802.7 gi|126465423|ref|YP_001040532.1| - 0.066 13.1 0.0 0.61 10.0 0.0 2.5 3 0 0 3 3 3 0 MarR family Spo0A_C PF08769.11 gi|126465423|ref|YP_001040532.1| - 0.092 12.8 1.9 0.51 10.5 0.5 2.7 1 1 1 2 2 2 0 Sporulation initiation factor Spo0A C terminal DUF948 PF06103.11 gi|126465423|ref|YP_001040532.1| - 0.47 10.7 4.6 13 6.2 0.0 2.6 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF4143 PF13635.6 gi|126465423|ref|YP_001040532.1| - 0.6 10.3 3.2 0.22 11.7 0.4 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4143) tRNA-synt_1e PF01406.19 gi|126465424|ref|YP_001040533.1| - 4.2e-126 420.4 0.0 5.6e-126 420.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|126465424|ref|YP_001040533.1| - 1.3e-12 47.2 1.0 1.9e-07 30.2 0.3 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|126465424|ref|YP_001040533.1| - 1.1e-08 35.5 0.0 3.9e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1 PF00133.22 gi|126465424|ref|YP_001040533.1| - 4.9e-06 25.1 0.0 0.00013 20.3 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|126465424|ref|YP_001040533.1| - 0.0014 17.6 1.2 0.0017 17.3 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) ArsA_ATPase PF02374.15 gi|126465424|ref|YP_001040533.1| - 0.024 13.8 0.7 0.12 11.6 0.4 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase tRNA-synt_1c PF00749.21 gi|126465424|ref|YP_001040533.1| - 0.041 12.8 0.7 0.23 10.3 0.1 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain Lipoprotein_7 PF01540.16 gi|126465424|ref|YP_001040533.1| - 0.087 12.1 0.5 0.21 10.8 0.2 1.8 2 0 0 2 2 2 0 Adhesin lipoprotein DUF848 PF05852.11 gi|126465424|ref|YP_001040533.1| - 0.49 10.5 2.8 0.29 11.2 0.3 1.9 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF948 PF06103.11 gi|126465424|ref|YP_001040533.1| - 0.65 10.3 1.7 1.8 8.8 0.1 2.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) PNP_UDP_1 PF01048.20 gi|126465425|ref|YP_001040534.1| - 6.9e-44 149.8 0.1 7.6e-44 149.7 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Lentiviral_Tat PF02998.14 gi|126465426|ref|YP_001040535.1| - 0.0091 16.0 1.2 0.018 15.1 0.0 2.0 2 0 0 2 2 2 1 Lentiviral Tat protein ROK PF00480.20 gi|126465426|ref|YP_001040535.1| - 0.017 14.7 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 ROK family DUF4834 PF16118.5 gi|126465426|ref|YP_001040535.1| - 3.2 8.8 6.5 6 7.9 6.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) Adenosine_kin PF04008.14 gi|126465427|ref|YP_001040536.1| - 2.5e-75 251.4 0.1 2.9e-75 251.2 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase TRAM PF01938.20 gi|126465429|ref|YP_001040538.1| - 7.9e-05 22.6 1.6 0.00027 20.9 1.6 1.8 1 1 0 1 1 1 1 TRAM domain S1 PF00575.23 gi|126465429|ref|YP_001040538.1| - 0.12 12.7 2.9 1.1 9.6 0.1 2.6 1 1 1 2 2 2 0 S1 RNA binding domain MazE_antitoxin PF04014.18 gi|126465430|ref|YP_001040539.1| - 0.011 15.7 0.3 0.025 14.5 0.3 1.7 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin RmuC PF02646.16 gi|126465430|ref|YP_001040539.1| - 0.035 13.2 2.7 1.9 7.6 0.2 2.4 3 0 0 3 3 3 0 RmuC family Laminin_I PF06008.14 gi|126465430|ref|YP_001040539.1| - 0.081 12.6 4.3 0.052 13.2 1.3 2.2 2 1 0 2 2 2 0 Laminin Domain I Fib_alpha PF08702.10 gi|126465430|ref|YP_001040539.1| - 0.09 13.0 3.0 0.37 11.0 0.2 2.6 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family OST-HTH PF12872.7 gi|126465430|ref|YP_001040539.1| - 0.09 12.6 0.8 2.2 8.2 0.0 3.0 3 1 0 3 3 3 0 OST-HTH/LOTUS domain CIDE-N PF02017.15 gi|126465430|ref|YP_001040539.1| - 0.22 11.6 0.9 4.8 7.3 0.1 3.0 3 1 0 3 3 3 0 CIDE-N domain DUF2203 PF09969.9 gi|126465430|ref|YP_001040539.1| - 0.74 10.5 2.7 5.3 7.8 0.5 2.5 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) PALP PF00291.25 gi|126465431|ref|YP_001040540.1| - 1.4e-83 280.7 0.2 1.7e-83 280.5 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|126465431|ref|YP_001040540.1| - 2.5e-05 23.9 0.7 0.00013 21.7 0.0 2.2 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|126465431|ref|YP_001040540.1| - 0.05 13.4 0.4 7.5 6.4 0.0 2.9 2 0 0 2 2 2 0 ACT domain ACT_6 PF13740.6 gi|126465431|ref|YP_001040540.1| - 0.098 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 ACT domain DUF4368 PF14287.6 gi|126465431|ref|YP_001040540.1| - 0.12 12.7 0.3 0.45 10.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) HypA PF01155.19 gi|126465432|ref|YP_001040541.1| - 0.00044 20.3 0.0 0.00048 20.1 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_5 PF01022.20 gi|126465432|ref|YP_001040541.1| - 0.00087 19.1 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Zn-ribbon_8 PF09723.10 gi|126465432|ref|YP_001040541.1| - 0.0009 19.3 1.6 0.0015 18.6 1.6 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|126465432|ref|YP_001040541.1| - 0.0011 18.9 0.2 0.0018 18.2 0.2 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type TFIIE_beta PF02186.15 gi|126465432|ref|YP_001040541.1| - 0.0042 17.3 0.1 0.0059 16.9 0.1 1.2 1 0 0 1 1 1 1 TFIIE beta subunit core domain HTH_11 PF08279.12 gi|126465432|ref|YP_001040541.1| - 0.0083 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain MCM_OB PF17207.3 gi|126465432|ref|YP_001040541.1| - 0.02 14.7 0.2 0.024 14.5 0.2 1.2 1 0 0 1 1 1 0 MCM OB domain TBPIP PF07106.13 gi|126465432|ref|YP_001040541.1| - 0.053 13.5 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain DZR PF12773.7 gi|126465432|ref|YP_001040541.1| - 0.082 12.9 1.5 0.33 11.0 1.7 1.7 1 1 1 2 2 2 0 Double zinc ribbon Antigen_Bd37 PF11641.8 gi|126465432|ref|YP_001040541.1| - 0.096 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein TFIIS_C PF01096.18 gi|126465432|ref|YP_001040541.1| - 0.1 12.5 0.8 14 5.7 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) FYDLN_acid PF09538.10 gi|126465432|ref|YP_001040541.1| - 0.21 12.3 2.3 0.33 11.6 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UPF0547 PF10571.9 gi|126465432|ref|YP_001040541.1| - 1.3 9.1 5.6 2.5 8.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|126465432|ref|YP_001040541.1| - 1.8 8.6 3.7 3.3 7.7 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF167 PF02594.16 gi|126465433|ref|YP_001040542.1| - 2.4e-20 72.4 0.0 4e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 Radical_SAM PF04055.21 gi|126465434|ref|YP_001040543.1| - 5.2e-25 88.8 0.0 1.2e-24 87.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|126465434|ref|YP_001040543.1| - 4.2e-06 26.8 0.0 7.4e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain DUF4423 PF14394.6 gi|126465435|ref|YP_001040544.1| - 0.00036 20.3 0.0 0.00068 19.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) Rad1 PF02144.16 gi|126465435|ref|YP_001040544.1| - 0.076 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Repair protein Rad1/Rec1/Rad17 HAD_2 PF13419.6 gi|126465436|ref|YP_001040545.1| - 4.7e-18 65.9 0.0 1.3e-17 64.5 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126465436|ref|YP_001040545.1| - 4.9e-16 59.7 0.2 6.6e-16 59.3 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126465436|ref|YP_001040545.1| - 3.4e-05 23.8 0.0 6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_phosphat_B PF03767.14 gi|126465436|ref|YP_001040545.1| - 0.024 14.2 0.0 0.07 12.7 0.0 1.8 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase PF00702.26 gi|126465436|ref|YP_001040545.1| - 0.24 11.7 0.0 0.61 10.3 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase TatD_DNase PF01026.21 gi|126465438|ref|YP_001040547.1| - 3.7e-48 164.1 0.3 4.5e-48 163.9 0.3 1.0 1 0 0 1 1 1 1 TatD related DNase DUF3791 PF12668.7 gi|126465438|ref|YP_001040547.1| - 1.7 8.7 5.3 8.8 6.5 0.8 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) ATG16 PF08614.11 gi|126465441|ref|YP_001040550.1| - 5.5e-06 26.8 9.2 9.6e-06 26.0 9.2 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) LRRFIP PF09738.9 gi|126465441|ref|YP_001040550.1| - 0.00062 19.3 3.2 0.00074 19.1 3.2 1.2 1 0 0 1 1 1 1 LRRFIP family Cep57_CLD_2 PF14197.6 gi|126465441|ref|YP_001040550.1| - 0.00065 19.7 10.4 0.0015 18.6 10.4 1.7 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 Troponin PF00992.20 gi|126465441|ref|YP_001040550.1| - 0.00073 19.8 8.7 0.0012 19.1 8.7 1.5 1 0 0 1 1 1 1 Troponin DUF812 PF05667.11 gi|126465441|ref|YP_001040550.1| - 0.00092 18.2 7.7 0.0011 18.0 7.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) BLOC1_2 PF10046.9 gi|126465441|ref|YP_001040550.1| - 0.001 19.3 12.1 0.0014 18.9 11.0 1.8 2 0 0 2 2 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|126465441|ref|YP_001040550.1| - 0.0023 16.9 11.5 0.0031 16.5 11.5 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein RTBV_P46 PF06216.11 gi|126465441|ref|YP_001040550.1| - 0.0035 16.3 1.5 0.005 15.8 1.5 1.2 1 0 0 1 1 1 1 Rice tungro bacilliform virus P46 protein eIF3_N PF09440.10 gi|126465441|ref|YP_001040550.1| - 0.0036 17.7 5.5 0.0071 16.8 5.5 1.5 1 0 0 1 1 1 1 eIF3 subunit 6 N terminal domain HTH_23 PF13384.6 gi|126465441|ref|YP_001040550.1| - 0.0053 16.5 0.0 0.018 14.8 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain DUF724 PF05266.14 gi|126465441|ref|YP_001040550.1| - 0.0062 16.4 8.9 0.011 15.6 8.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF724) TSNAXIP1_N PF15739.5 gi|126465441|ref|YP_001040550.1| - 0.0067 16.8 10.0 0.015 15.6 10.0 1.7 1 0 0 1 1 1 1 Translin-associated factor X-interacting N-terminus FPP PF05911.11 gi|126465441|ref|YP_001040550.1| - 0.0078 14.5 10.0 0.01 14.1 10.0 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil HAUS-augmin3 PF14932.6 gi|126465441|ref|YP_001040550.1| - 0.0091 15.6 7.6 0.0091 15.6 7.6 1.7 2 0 0 2 2 2 1 HAUS augmin-like complex subunit 3 TolA_bind_tri PF16331.5 gi|126465441|ref|YP_001040550.1| - 0.0097 16.0 3.0 0.022 14.8 3.0 1.6 1 0 0 1 1 1 1 TolA binding protein trimerisation GIT_CC PF16559.5 gi|126465441|ref|YP_001040550.1| - 0.011 15.6 2.7 0.032 14.1 2.7 1.9 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor HAUS6_N PF14661.6 gi|126465441|ref|YP_001040550.1| - 0.012 15.2 2.5 0.014 15.0 2.5 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus YabA PF06156.13 gi|126465441|ref|YP_001040550.1| - 0.012 16.2 10.0 0.025 15.2 10.0 1.5 1 0 0 1 1 1 0 Initiation control protein YabA UPF0242 PF06785.11 gi|126465441|ref|YP_001040550.1| - 0.014 15.5 11.8 0.021 14.9 11.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 gi|126465441|ref|YP_001040550.1| - 0.014 14.7 4.2 0.024 13.9 4.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Baculo_PEP_C PF04513.12 gi|126465441|ref|YP_001040550.1| - 0.014 15.4 0.9 0.026 14.6 0.9 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Wtap PF17098.5 gi|126465441|ref|YP_001040550.1| - 0.017 15.1 8.0 0.017 15.1 8.0 1.7 1 1 1 2 2 2 0 WTAP/Mum2p family AAA_13 PF13166.6 gi|126465441|ref|YP_001040550.1| - 0.019 13.7 6.4 0.021 13.5 6.4 1.1 1 0 0 1 1 1 0 AAA domain Tektin PF03148.14 gi|126465441|ref|YP_001040550.1| - 0.031 13.0 10.4 0.049 12.4 10.4 1.2 1 0 0 1 1 1 0 Tektin family Trimer_CC PF08954.11 gi|126465441|ref|YP_001040550.1| - 0.037 13.6 3.2 0.098 12.2 3.2 1.8 1 0 0 1 1 1 0 Trimerisation motif Sec2p PF06428.11 gi|126465441|ref|YP_001040550.1| - 0.04 13.9 5.1 0.04 13.9 5.1 2.5 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p FapA PF03961.13 gi|126465441|ref|YP_001040550.1| - 0.042 12.5 9.0 0.047 12.3 9.0 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A HemX PF04375.14 gi|126465441|ref|YP_001040550.1| - 0.043 13.1 4.1 1.8 7.8 4.7 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase ADIP PF11559.8 gi|126465441|ref|YP_001040550.1| - 0.043 13.9 9.4 0.15 12.2 9.9 1.6 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding AAA_23 PF13476.6 gi|126465441|ref|YP_001040550.1| - 0.048 14.1 11.3 0.082 13.4 11.3 1.4 1 0 0 1 1 1 0 AAA domain APG6_N PF17675.1 gi|126465441|ref|YP_001040550.1| - 0.05 14.1 10.5 0.093 13.3 10.5 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF1664 PF07889.12 gi|126465441|ref|YP_001040550.1| - 0.051 13.6 6.1 0.11 12.6 6.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|126465441|ref|YP_001040550.1| - 0.054 13.7 13.1 0.12 12.7 13.1 1.5 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain COG6 PF06419.11 gi|126465441|ref|YP_001040550.1| - 0.056 11.6 7.5 0.078 11.2 7.5 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 FmiP_Thoc5 PF09766.9 gi|126465441|ref|YP_001040550.1| - 0.058 12.7 10.7 0.074 12.3 10.7 1.1 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 CCDC92 PF14916.6 gi|126465441|ref|YP_001040550.1| - 0.065 13.0 7.5 0.044 13.6 5.1 2.0 2 0 0 2 2 2 0 Coiled-coil domain of unknown function DUF4407 PF14362.6 gi|126465441|ref|YP_001040550.1| - 0.073 12.4 2.9 0.12 11.7 2.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF16 PF01519.16 gi|126465441|ref|YP_001040550.1| - 0.077 13.5 12.9 0.24 11.9 13.1 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 HTH_7 PF02796.15 gi|126465441|ref|YP_001040550.1| - 0.078 13.1 0.0 0.28 11.3 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|126465441|ref|YP_001040550.1| - 0.086 12.6 0.1 0.23 11.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain ERM PF00769.19 gi|126465441|ref|YP_001040550.1| - 0.088 12.6 11.6 0.18 11.6 11.6 1.4 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fib_alpha PF08702.10 gi|126465441|ref|YP_001040550.1| - 0.1 12.8 6.1 0.22 11.7 6.1 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Spectrin PF00435.21 gi|126465441|ref|YP_001040550.1| - 0.13 12.7 7.7 0.29 11.6 7.7 1.5 1 0 0 1 1 1 0 Spectrin repeat DivIC PF04977.15 gi|126465441|ref|YP_001040550.1| - 0.16 11.8 13.9 0.096 12.5 7.5 2.8 1 1 1 2 2 2 0 Septum formation initiator DUF4806 PF16064.5 gi|126465441|ref|YP_001040550.1| - 0.16 12.3 3.8 3.1 8.2 4.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4806) CENP-H PF05837.12 gi|126465441|ref|YP_001040550.1| - 0.2 12.1 8.3 0.4 11.1 8.3 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) LMBR1 PF04791.16 gi|126465441|ref|YP_001040550.1| - 0.24 10.2 3.5 0.29 10.0 3.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein KxDL PF10241.9 gi|126465441|ref|YP_001040550.1| - 0.25 11.7 5.5 0.49 10.7 5.5 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein FlaC_arch PF05377.11 gi|126465441|ref|YP_001040550.1| - 0.26 11.7 13.8 0.13 12.6 8.4 2.9 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) zf-C4H2 PF10146.9 gi|126465441|ref|YP_001040550.1| - 0.29 11.4 10.4 0.46 10.8 10.4 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein bZIP_1 PF00170.21 gi|126465441|ref|YP_001040550.1| - 0.29 11.2 18.8 0.18 11.9 11.8 2.8 1 1 1 2 2 2 0 bZIP transcription factor ZnuA PF01297.17 gi|126465441|ref|YP_001040550.1| - 0.3 10.5 3.9 0.62 9.4 3.9 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic Occludin_ELL PF07303.13 gi|126465441|ref|YP_001040550.1| - 0.31 11.8 11.5 0.22 12.2 9.7 1.7 2 0 0 2 2 1 0 Occludin homology domain Glyco_tran_28_C PF04101.16 gi|126465441|ref|YP_001040550.1| - 0.35 10.8 3.9 0.55 10.2 3.9 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain TMPIT PF07851.13 gi|126465441|ref|YP_001040550.1| - 0.36 10.0 7.7 0.5 9.6 7.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein Atg14 PF10186.9 gi|126465441|ref|YP_001040550.1| - 0.38 9.8 5.4 0.55 9.3 5.4 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1241 PF06840.11 gi|126465441|ref|YP_001040550.1| - 0.54 9.9 8.9 0.52 9.9 7.5 1.7 2 1 0 2 2 1 0 Protein of unknown function (DUF1241) CEP63 PF17045.5 gi|126465441|ref|YP_001040550.1| - 0.61 9.9 14.5 1.2 9.0 14.4 1.5 1 1 0 1 1 1 0 Centrosomal protein of 63 kDa Med4 PF10018.9 gi|126465441|ref|YP_001040550.1| - 0.68 9.6 11.5 1.1 9.0 11.5 1.3 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 FAM76 PF16046.5 gi|126465441|ref|YP_001040550.1| - 0.71 9.2 7.9 0.78 9.0 7.9 1.1 1 0 0 1 1 1 0 FAM76 protein XhlA PF10779.9 gi|126465441|ref|YP_001040550.1| - 0.82 9.9 16.4 0.34 11.2 10.8 2.5 1 1 1 2 2 2 0 Haemolysin XhlA Tho2 PF11262.8 gi|126465441|ref|YP_001040550.1| - 0.9 8.7 7.7 1.4 8.1 7.7 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 COG2 PF06148.11 gi|126465441|ref|YP_001040550.1| - 1.1 9.4 7.2 2.3 8.3 7.1 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Swi5 PF07061.11 gi|126465441|ref|YP_001040550.1| - 1.4 9.1 13.5 0.44 10.7 8.9 2.4 1 1 1 2 2 2 0 Swi5 ACCA PF03255.14 gi|126465441|ref|YP_001040550.1| - 1.5 8.7 6.4 3.4 7.5 6.4 1.6 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Snapin_Pallidin PF14712.6 gi|126465441|ref|YP_001040550.1| - 1.5 9.3 11.5 1.2 9.6 7.8 2.2 1 1 1 2 2 2 0 Snapin/Pallidin GDPD PF03009.17 gi|126465441|ref|YP_001040550.1| - 2.1 8.0 5.9 7.8 6.1 5.2 1.9 1 1 1 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Fmp27_WPPW PF10359.9 gi|126465441|ref|YP_001040550.1| - 2.5 6.9 8.2 3 6.6 8.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF641 PF04859.12 gi|126465441|ref|YP_001040550.1| - 2.5 8.4 10.8 5.4 7.4 10.4 1.9 1 1 1 2 2 1 0 Plant protein of unknown function (DUF641) Spc29 PF17082.5 gi|126465441|ref|YP_001040550.1| - 2.5 7.9 10.1 1.1 9.1 4.4 2.2 1 1 1 2 2 2 0 Spindle Pole Component 29 DUF4140 PF13600.6 gi|126465441|ref|YP_001040550.1| - 3.2 8.3 6.2 25 5.4 6.2 2.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF4404 PF14357.6 gi|126465441|ref|YP_001040550.1| - 9.7 6.9 14.9 2.6 8.7 9.2 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF4404) Csm1_N PF18504.1 gi|126465441|ref|YP_001040550.1| - 9.9 6.6 17.9 1.3 9.4 5.0 2.6 1 1 1 2 2 2 0 Csm1 N-terminal domain Beta_protein PF14350.6 gi|126465443|ref|YP_001040552.1| - 0.058 12.8 0.3 0.067 12.6 0.3 1.0 1 0 0 1 1 1 0 Beta protein Rota_Capsid_VP6 PF00980.17 gi|126465443|ref|YP_001040552.1| - 0.11 11.4 0.2 0.13 11.1 0.2 1.1 1 0 0 1 1 1 0 Rotavirus major capsid protein VP6 Sua5_yciO_yrdC PF01300.18 gi|126465445|ref|YP_001040554.1| - 4.2e-40 137.1 0.0 4.9e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination eRF1_2 PF03464.15 gi|126465446|ref|YP_001040555.1| - 4.9e-44 149.9 0.0 8e-44 149.2 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|126465446|ref|YP_001040555.1| - 3.3e-22 79.1 0.1 9.3e-21 74.4 0.1 2.5 1 1 0 1 1 1 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|126465446|ref|YP_001040555.1| - 8.9e-16 58.4 0.0 2.2e-15 57.1 0.0 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|126465446|ref|YP_001040555.1| - 2.2e-12 47.4 0.0 3.8e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|126465446|ref|YP_001040555.1| - 0.0024 17.9 0.0 0.0054 16.7 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 1 TrkA_C PF02080.21 gi|126465447|ref|YP_001040556.1| - 2.5e-19 68.9 0.7 1.1e-08 34.8 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|126465447|ref|YP_001040556.1| - 3.4e-12 46.7 15.8 7.2e-06 26.4 3.1 2.6 2 0 0 2 2 2 2 PhoU domain APAF1_C PF17908.1 gi|126465448|ref|YP_001040557.1| - 0.16 11.9 0.1 0.25 11.3 0.1 1.4 1 1 0 1 1 1 0 APAF-1 helical domain Imm57 PF15596.6 gi|126465448|ref|YP_001040557.1| - 0.18 12.2 0.0 0.24 11.8 0.0 1.3 1 1 0 1 1 1 0 Immunity protein 57 PhoU PF01895.19 gi|126465449|ref|YP_001040558.1| - 4.2e-26 91.2 12.9 7.8e-25 87.2 3.6 2.7 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|126465449|ref|YP_001040558.1| - 8.9e-12 44.7 0.0 2.2e-11 43.4 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Pkinase PF00069.25 gi|126465450|ref|YP_001040559.1| - 5.4e-15 55.5 0.0 1.2e-14 54.3 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|126465450|ref|YP_001040559.1| - 2.8e-07 30.1 0.0 8.7e-07 28.5 0.0 1.8 2 0 0 2 2 2 1 Protein tyrosine kinase Pox_ser-thr_kin PF05445.11 gi|126465450|ref|YP_001040559.1| - 0.0049 15.9 4.0 0.14 11.1 0.0 2.3 2 0 0 2 2 2 2 Poxvirus serine/threonine protein kinase FHA PF00498.26 gi|126465451|ref|YP_001040560.1| - 3.2e-20 72.2 0.0 4.3e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|126465451|ref|YP_001040560.1| - 1.7e-15 57.1 0.0 2.2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain VWA PF00092.28 gi|126465452|ref|YP_001040561.1| - 4.8e-16 59.5 0.0 8.4e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|126465452|ref|YP_001040561.1| - 7.3e-12 45.9 0.0 1.9e-11 44.5 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|126465452|ref|YP_001040561.1| - 3e-06 27.3 0.0 6.6e-06 26.1 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain PucR PF07905.11 gi|126465452|ref|YP_001040561.1| - 0.0084 16.4 0.1 0.13 12.6 0.0 2.5 2 1 0 2 2 2 1 Purine catabolism regulatory protein-like family BatD PF13584.6 gi|126465452|ref|YP_001040561.1| - 0.02 13.7 0.1 0.027 13.3 0.1 1.1 1 0 0 1 1 1 0 Oxygen tolerance VWA_CoxE PF05762.14 gi|126465452|ref|YP_001040561.1| - 0.042 13.2 0.0 0.21 11.0 0.0 1.9 2 1 0 2 2 2 0 VWA domain containing CoxE-like protein Glyco_tran_WecB PF03808.13 gi|126465452|ref|YP_001040561.1| - 0.095 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family SPOR PF05036.13 gi|126465452|ref|YP_001040561.1| - 0.16 12.3 0.1 2 8.9 0.0 2.5 2 0 0 2 2 2 0 Sporulation related domain Flavin_Reduct PF01613.18 gi|126465453|ref|YP_001040562.1| - 1.1e-20 74.3 0.0 1.4e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Inositol_P PF00459.25 gi|126465454|ref|YP_001040563.1| - 2.6e-20 73.1 0.0 3.4e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|126465454|ref|YP_001040563.1| - 2.1e-06 27.4 0.0 2.9e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Peptidase_M24 PF00557.24 gi|126465455|ref|YP_001040564.1| - 4.3e-56 189.9 0.0 5.5e-56 189.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|126465455|ref|YP_001040564.1| - 9.7e-08 32.7 0.0 1.6e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain L31 PF09784.9 gi|126465455|ref|YP_001040564.1| - 0.12 12.8 0.0 7.4 7.1 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 ATP-cone PF03477.16 gi|126465455|ref|YP_001040564.1| - 0.13 12.9 0.7 6.3 7.5 0.1 2.5 2 0 0 2 2 2 0 ATP cone domain DND1_DSRM PF14709.7 gi|126465456|ref|YP_001040565.1| - 0.042 14.1 0.1 0.052 13.8 0.1 1.1 1 0 0 1 1 1 0 double strand RNA binding domain from DEAD END PROTEIN 1 Acetone_carb_G PF08882.11 gi|126465456|ref|YP_001040565.1| - 0.047 13.8 0.1 0.053 13.7 0.1 1.2 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit zf-Mss51 PF13824.6 gi|126465456|ref|YP_001040565.1| - 0.071 13.2 0.7 2.7 8.2 0.7 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|126465456|ref|YP_001040565.1| - 0.072 13.6 0.2 0.14 12.7 0.2 1.4 1 0 0 1 1 1 0 Zinc-finger double domain DUF866 PF05907.13 gi|126465456|ref|YP_001040565.1| - 0.094 12.6 0.0 0.098 12.6 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) FERM_F2 PF18377.1 gi|126465458|ref|YP_001040567.1| - 0.076 13.0 0.1 0.57 10.1 0.0 1.9 1 1 1 2 2 2 0 FERM F2 acyl-CoA binding protein-like domain AP2 PF00847.20 gi|126465458|ref|YP_001040567.1| - 0.094 13.0 0.6 0.16 12.2 0.1 1.6 2 0 0 2 2 2 0 AP2 domain Aminotran_5 PF00266.19 gi|126465459|ref|YP_001040568.1| - 3.1e-39 135.0 0.0 3.9e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|126465459|ref|YP_001040568.1| - 0.0021 17.0 0.0 0.003 16.4 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|126465459|ref|YP_001040568.1| - 0.061 11.8 0.0 0.085 11.4 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme eIF-5a PF01287.20 gi|126465459|ref|YP_001040568.1| - 0.13 12.4 0.1 3.9 7.7 0.0 2.9 3 0 0 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Ntox8 PF15545.6 gi|126465459|ref|YP_001040568.1| - 0.16 12.1 0.0 1.9 8.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial toxin 8 2-Hacid_dh_C PF02826.19 gi|126465460|ref|YP_001040569.1| - 1.2e-70 236.5 0.0 1.9e-70 235.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|126465460|ref|YP_001040569.1| - 8.9e-39 132.2 0.1 1e-38 132.0 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|126465460|ref|YP_001040569.1| - 5.4e-05 23.4 0.2 0.00015 21.9 0.0 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.17 gi|126465460|ref|YP_001040569.1| - 0.0011 19.2 0.8 0.69 10.3 0.1 3.5 2 1 2 4 4 4 1 Dinitrogenase iron-molybdenum cofactor AlaDh_PNT_C PF01262.21 gi|126465460|ref|YP_001040569.1| - 0.0026 17.1 0.1 0.0069 15.7 0.1 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|126465460|ref|YP_001040569.1| - 0.015 15.9 0.4 0.22 12.2 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|126465460|ref|YP_001040569.1| - 0.017 15.4 0.6 3.6 7.9 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain NmrA PF05368.13 gi|126465460|ref|YP_001040569.1| - 0.023 14.3 0.2 0.072 12.6 0.1 1.9 2 0 0 2 2 2 0 NmrA-like family Gp_dh_N PF00044.24 gi|126465460|ref|YP_001040569.1| - 0.087 13.2 0.2 0.24 11.8 0.2 1.8 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|126465460|ref|YP_001040569.1| - 0.13 12.5 0.7 9.7 6.5 0.1 2.7 2 2 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF5603 PF18231.1 gi|126465461|ref|YP_001040570.1| - 6.7e-58 193.5 7.6 1.5e-57 192.4 5.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5603) ParBc PF02195.18 gi|126465461|ref|YP_001040570.1| - 9.2e-15 54.7 0.8 2.2e-14 53.5 0.0 1.9 2 0 0 2 2 2 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|126465461|ref|YP_001040570.1| - 2.5e-08 33.2 0.2 0.00033 19.6 0.0 2.9 2 1 1 3 3 3 2 Protein of unknown function (DUF1015) Ribosomal_L9_C PF03948.14 gi|126465461|ref|YP_001040570.1| - 0.074 13.5 0.5 0.37 11.3 0.1 2.3 1 1 1 2 2 2 0 Ribosomal protein L9, C-terminal domain EamA PF00892.20 gi|126465462|ref|YP_001040571.1| - 2.9e-33 114.9 32.3 1.5e-21 77.0 9.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family S1FA PF04689.13 gi|126465462|ref|YP_001040571.1| - 1.3 9.2 3.9 2.6 8.2 0.0 3.0 2 1 0 2 2 2 0 DNA binding protein S1FA DUF2516 PF10724.9 gi|126465463|ref|YP_001040572.1| - 9.3 6.6 9.9 0.24 11.7 0.4 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF2516) PTS_2-RNA PF01885.16 gi|126465464|ref|YP_001040573.1| - 1.2e-31 110.2 0.0 1.5e-31 109.8 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Desulfoferrod_N PF06397.12 gi|126465464|ref|YP_001040573.1| - 0.029 14.0 1.1 0.058 13.0 1.1 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain PARP PF00644.20 gi|126465464|ref|YP_001040573.1| - 0.037 13.6 0.0 0.052 13.1 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase catalytic domain Glyco_hydro_99 PF16317.5 gi|126465466|ref|YP_001040575.1| - 2.2e-12 46.8 6.7 2e-07 30.5 0.2 2.3 2 0 0 2 2 2 2 Glycosyl hydrolase family 99 Glyco_tran_WbsX PF14307.6 gi|126465466|ref|YP_001040575.1| - 2.7e-08 33.7 3.6 0.00011 21.8 0.4 2.9 2 1 1 3 3 3 2 Glycosyltransferase WbsX DUF3561 PF12084.8 gi|126465466|ref|YP_001040575.1| - 0.024 14.6 0.2 0.074 13.1 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) adh_short_C2 PF13561.6 gi|126465467|ref|YP_001040576.1| - 5e-50 170.2 0.0 7.6e-50 169.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|126465467|ref|YP_001040576.1| - 1.6e-39 135.4 0.0 1.9e-39 135.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|126465467|ref|YP_001040576.1| - 4.4e-06 26.7 0.0 8e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|126465467|ref|YP_001040576.1| - 0.0011 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 gi|126465467|ref|YP_001040576.1| - 0.015 15.2 0.2 0.042 13.7 0.0 1.8 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA_29 PF13555.6 gi|126465468|ref|YP_001040577.1| - 0.097 12.4 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NfeD PF01957.18 gi|126465469|ref|YP_001040578.1| - 3.6e-18 65.7 0.1 6.7e-18 64.8 0.1 1.4 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Band_7 PF01145.25 gi|126465470|ref|YP_001040579.1| - 2.7e-43 148.1 0.6 2.7e-43 148.1 0.6 1.7 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|126465470|ref|YP_001040579.1| - 0.0043 16.8 0.1 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 SPFH domain-Band 7 family Lipoprotein_15 PF03640.15 gi|126465472|ref|YP_001040581.1| - 7.2e-60 198.3 14.2 7.3e-20 70.2 1.1 4.2 4 0 0 4 4 4 4 Secreted repeat of unknown function HTH_5 PF01022.20 gi|126465473|ref|YP_001040582.1| - 3.8e-11 42.7 0.5 6.7e-11 41.9 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|126465473|ref|YP_001040582.1| - 1.6e-07 31.2 0.2 3e-07 30.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|126465473|ref|YP_001040582.1| - 4.5e-06 26.6 0.0 7.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|126465473|ref|YP_001040582.1| - 4.8e-05 23.2 0.4 0.00011 22.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|126465473|ref|YP_001040582.1| - 0.00011 22.0 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|126465473|ref|YP_001040582.1| - 0.00043 20.0 0.3 0.001 18.8 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|126465473|ref|YP_001040582.1| - 0.00058 19.8 0.0 0.00096 19.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HxlR PF01638.17 gi|126465473|ref|YP_001040582.1| - 0.001 18.9 0.2 0.0014 18.4 0.2 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Rrf2 PF02082.20 gi|126465473|ref|YP_001040582.1| - 0.0013 19.1 0.1 0.0017 18.7 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|126465473|ref|YP_001040582.1| - 0.0015 18.4 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|126465473|ref|YP_001040582.1| - 0.0015 18.4 0.1 0.0022 18.0 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|126465473|ref|YP_001040582.1| - 0.0019 18.1 0.1 0.0031 17.4 0.1 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|126465473|ref|YP_001040582.1| - 0.0022 17.5 1.1 0.004 16.7 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|126465473|ref|YP_001040582.1| - 0.0033 17.5 0.1 0.0089 16.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|126465473|ref|YP_001040582.1| - 0.0051 16.7 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|126465473|ref|YP_001040582.1| - 0.0054 16.5 0.2 0.014 15.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|126465473|ref|YP_001040582.1| - 0.022 14.9 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 DprA winged helix domain DUF4423 PF14394.6 gi|126465473|ref|YP_001040582.1| - 0.025 14.3 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.21 gi|126465473|ref|YP_001040582.1| - 0.032 13.9 0.2 0.14 11.8 0.1 2.0 1 1 1 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|126465473|ref|YP_001040582.1| - 0.043 13.6 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_40 PF14493.6 gi|126465473|ref|YP_001040582.1| - 0.044 14.2 0.2 0.069 13.6 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|126465473|ref|YP_001040582.1| - 0.071 12.9 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain TnsD PF15978.5 gi|126465473|ref|YP_001040582.1| - 0.1 11.5 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D DUF2513 PF10711.9 gi|126465473|ref|YP_001040582.1| - 0.13 12.6 0.2 0.25 11.7 0.2 1.6 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_Tnp_ISL3 PF13542.6 gi|126465473|ref|YP_001040582.1| - 0.13 11.7 0.0 0.76 9.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 RepL PF05732.11 gi|126465473|ref|YP_001040582.1| - 0.14 11.5 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.19 gi|126465473|ref|YP_001040582.1| - 0.15 12.3 0.1 0.35 11.1 0.0 1.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Phage_integr_3 PF16795.5 gi|126465475|ref|YP_001040584.1| - 7e-10 39.0 0.1 9.1e-10 38.7 0.1 1.1 1 0 0 1 1 1 1 Archaeal phage integrase Lsm_C PF14894.6 gi|126465476|ref|YP_001040585.1| - 0.059 13.2 0.1 0.059 13.2 0.1 3.1 3 0 0 3 3 3 0 Lsm C-terminal AAA_5 PF07728.14 gi|126465477|ref|YP_001040586.1| - 3.1e-17 62.9 0.0 2.4e-16 60.0 0.0 2.5 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|126465477|ref|YP_001040586.1| - 6.2e-06 26.7 0.0 5.4e-05 23.6 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_3 PF07726.11 gi|126465477|ref|YP_001040586.1| - 2.2e-05 24.3 0.0 0.086 12.7 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) EVE PF01878.18 gi|126465477|ref|YP_001040586.1| - 5.3e-05 23.3 0.2 0.0019 18.2 0.0 2.6 2 0 0 2 2 2 1 EVE domain AAA PF00004.29 gi|126465477|ref|YP_001040586.1| - 0.00011 22.6 0.1 0.00056 20.3 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|126465477|ref|YP_001040586.1| - 0.00019 21.2 0.0 0.0042 16.8 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|126465477|ref|YP_001040586.1| - 0.0012 18.5 0.0 0.0035 16.9 0.0 1.8 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|126465477|ref|YP_001040586.1| - 0.0017 18.9 0.0 0.0068 17.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126465477|ref|YP_001040586.1| - 0.0027 17.9 0.0 0.0076 16.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|126465477|ref|YP_001040586.1| - 0.0039 16.8 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|126465477|ref|YP_001040586.1| - 0.0092 16.2 0.0 0.073 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|126465477|ref|YP_001040586.1| - 0.011 16.0 0.1 0.2 11.9 0.0 2.9 2 2 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|126465477|ref|YP_001040586.1| - 0.017 14.9 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4795 PF16043.5 gi|126465477|ref|YP_001040586.1| - 0.026 14.1 0.6 0.064 12.9 0.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) TIP49 PF06068.13 gi|126465477|ref|YP_001040586.1| - 0.05 12.8 0.0 0.15 11.3 0.0 1.7 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_24 PF13479.6 gi|126465477|ref|YP_001040586.1| - 0.073 12.8 0.1 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|126465477|ref|YP_001040586.1| - 0.11 11.9 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|126465477|ref|YP_001040586.1| - 0.11 13.0 0.0 0.28 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter ATPase PF06745.13 gi|126465477|ref|YP_001040586.1| - 0.12 11.7 1.3 1.2 8.5 0.0 2.7 3 0 0 3 3 3 0 KaiC Rep_Org_C PF06926.11 gi|126465477|ref|YP_001040586.1| - 0.12 12.7 4.2 0.087 13.1 0.6 2.3 2 0 0 2 2 2 0 Putative replisome organiser protein C-terminus RuvB_N PF05496.12 gi|126465477|ref|YP_001040586.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|126465477|ref|YP_001040586.1| - 0.16 11.7 0.0 0.42 10.3 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Phage_Mu_Gam PF07352.12 gi|126465477|ref|YP_001040586.1| - 0.2 11.6 2.8 0.42 10.5 0.7 2.3 2 0 0 2 2 2 0 Bacteriophage Mu Gam like protein PDDEXK_7 PF04411.12 gi|126465478|ref|YP_001040587.1| - 0.0037 17.3 0.1 0.015 15.3 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Mrr_cat PF04471.12 gi|126465478|ref|YP_001040587.1| - 0.026 14.5 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease Leu_leader PF08054.11 gi|126465478|ref|YP_001040587.1| - 0.059 13.0 0.2 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Leucine operon leader peptide AAA_5 PF07728.14 gi|126465479|ref|YP_001040588.1| - 3.5e-15 56.2 0.0 8.6e-15 55.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|126465479|ref|YP_001040588.1| - 1.4e-06 28.7 0.0 8.6e-06 26.2 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126465479|ref|YP_001040588.1| - 0.00072 20.0 0.0 0.0029 18.0 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|126465479|ref|YP_001040588.1| - 0.0017 18.2 0.0 1.4 8.8 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126465479|ref|YP_001040588.1| - 0.0017 18.6 0.0 0.0069 16.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126465479|ref|YP_001040588.1| - 0.0018 18.5 0.0 0.0035 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|126465479|ref|YP_001040588.1| - 0.0035 17.1 0.0 0.016 14.9 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 gi|126465479|ref|YP_001040588.1| - 0.0047 16.1 0.0 0.0096 15.1 0.0 1.4 1 0 0 1 1 1 1 PIF1-like helicase DUF87 PF01935.17 gi|126465479|ref|YP_001040588.1| - 0.0053 16.9 0.9 2.6 8.1 0.6 2.4 2 0 0 2 2 2 2 Helicase HerA, central domain RNA_helicase PF00910.22 gi|126465479|ref|YP_001040588.1| - 0.0057 17.0 0.0 0.035 14.5 0.0 2.4 3 0 0 3 3 1 1 RNA helicase AAA_7 PF12775.7 gi|126465479|ref|YP_001040588.1| - 0.0095 15.5 0.0 0.026 14.0 0.0 1.8 1 0 0 1 1 1 1 P-loop containing dynein motor region 6PF2K PF01591.18 gi|126465479|ref|YP_001040588.1| - 0.013 14.8 1.0 0.2 10.9 0.0 3.1 3 1 0 3 3 3 0 6-phosphofructo-2-kinase Mg_chelatase PF01078.21 gi|126465479|ref|YP_001040588.1| - 0.017 14.5 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|126465479|ref|YP_001040588.1| - 0.018 15.6 0.0 0.077 13.5 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|126465479|ref|YP_001040588.1| - 0.021 15.1 0.1 0.063 13.5 0.0 1.9 3 0 0 3 3 1 0 AAA domain IstB_IS21 PF01695.17 gi|126465479|ref|YP_001040588.1| - 0.022 14.5 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PPV_E1_C PF00519.17 gi|126465479|ref|YP_001040588.1| - 0.034 13.0 0.0 0.055 12.3 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase KAP_NTPase PF07693.14 gi|126465479|ref|YP_001040588.1| - 0.037 13.3 0.4 5.8 6.1 0.0 2.3 1 1 1 2 2 2 0 KAP family P-loop domain ABC_tran PF00005.27 gi|126465479|ref|YP_001040588.1| - 0.039 14.5 0.3 0.093 13.3 0.1 1.7 2 0 0 2 2 1 0 ABC transporter AAA_8 PF12780.7 gi|126465479|ref|YP_001040588.1| - 0.064 12.6 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 AAA_25 PF13481.6 gi|126465479|ref|YP_001040588.1| - 0.078 12.5 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126465479|ref|YP_001040588.1| - 0.09 13.1 0.0 0.47 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Torsin PF06309.11 gi|126465479|ref|YP_001040588.1| - 0.13 12.4 0.0 0.41 10.7 0.0 1.8 1 0 0 1 1 1 0 Torsin DUF499 PF04465.12 gi|126465481|ref|YP_001040590.1| - 0 1347.4 47.8 0 1347.0 47.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF499) AAA PF00004.29 gi|126465481|ref|YP_001040590.1| - 0.046 14.1 0.1 0.43 11.0 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF3206 PF11472.8 gi|126465481|ref|YP_001040590.1| - 0.3 11.1 2.2 0.67 10.0 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3206) Cons_hypoth95 PF03602.15 gi|126465482|ref|YP_001040591.1| - 4.6e-08 32.9 0.0 0.0026 17.4 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 DUF1156 PF06634.12 gi|126465482|ref|YP_001040591.1| - 6.9e-07 29.3 0.1 1.5e-06 28.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.18 gi|126465482|ref|YP_001040591.1| - 1.1e-06 28.5 0.0 0.0059 16.3 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|126465482|ref|YP_001040591.1| - 0.0025 17.5 2.3 0.024 14.3 0.0 3.0 3 0 0 3 3 3 1 DNA methylase MTS PF05175.14 gi|126465482|ref|YP_001040591.1| - 0.18 11.3 0.0 0.76 9.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain zinc_ribbon_4 PF13717.6 gi|126465482|ref|YP_001040591.1| - 0.39 10.7 2.9 7.1 6.6 0.3 2.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|126465482|ref|YP_001040591.1| - 4.1 7.5 4.5 0.95 9.5 0.5 2.0 2 0 0 2 2 2 0 BED zinc finger MethyltransfD12 PF02086.15 gi|126465483|ref|YP_001040592.1| - 0.0048 16.6 0.1 0.012 15.3 0.0 1.7 2 1 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase AAA_11 PF13086.6 gi|126465484|ref|YP_001040593.1| - 7.1e-08 32.5 0.0 1.8e-05 24.7 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|126465484|ref|YP_001040593.1| - 2.1e-05 24.2 0.0 0.00017 21.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|126465484|ref|YP_001040593.1| - 0.0016 18.3 0.0 0.0076 16.0 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|126465484|ref|YP_001040593.1| - 0.0019 18.0 0.0 0.02 14.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126465484|ref|YP_001040593.1| - 0.0031 17.9 0.0 0.0064 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|126465484|ref|YP_001040593.1| - 0.0057 17.0 0.0 0.066 13.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|126465484|ref|YP_001040593.1| - 0.082 13.3 0.0 0.28 11.6 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PDDEXK_1 PF12705.7 gi|126465485|ref|YP_001040594.1| - 9.7e-07 29.0 0.0 2e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily NurA PF09376.10 gi|126465489|ref|YP_001040598.1| - 0.00018 21.3 1.6 0.0008 19.2 1.4 2.4 1 1 0 1 1 1 1 NurA domain DUF3870 PF12986.7 gi|126465489|ref|YP_001040598.1| - 0.088 13.0 0.3 0.45 10.8 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF3870) DUF87 PF01935.17 gi|126465490|ref|YP_001040599.1| - 8.5e-14 52.2 1.6 5.3e-13 49.6 1.6 2.2 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|126465490|ref|YP_001040599.1| - 6e-08 32.0 0.0 2.3e-07 30.1 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|126465490|ref|YP_001040599.1| - 3.8e-05 23.2 0.1 0.0051 16.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|126465490|ref|YP_001040599.1| - 0.00018 21.8 0.0 0.15 12.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain Zot PF05707.12 gi|126465490|ref|YP_001040599.1| - 0.00021 21.0 0.2 0.0042 16.7 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_10 PF12846.7 gi|126465490|ref|YP_001040599.1| - 0.00064 18.7 0.0 0.041 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain ATPase PF06745.13 gi|126465490|ref|YP_001040599.1| - 0.00094 18.6 0.0 0.51 9.6 0.0 2.5 2 0 0 2 2 2 2 KaiC AAA_14 PF13173.6 gi|126465490|ref|YP_001040599.1| - 0.0024 17.9 0.0 2.2 8.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|126465490|ref|YP_001040599.1| - 0.0054 16.8 0.1 0.94 9.5 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|126465490|ref|YP_001040599.1| - 0.012 15.4 0.0 0.62 9.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|126465490|ref|YP_001040599.1| - 0.012 15.9 0.0 0.16 12.4 0.0 2.2 2 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|126465490|ref|YP_001040599.1| - 0.032 14.6 0.0 8.4 6.8 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Abhydrolase_1 PF00561.20 gi|126465490|ref|YP_001040599.1| - 0.033 13.8 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold RNA_helicase PF00910.22 gi|126465490|ref|YP_001040599.1| - 0.038 14.4 0.0 0.19 12.1 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_29 PF13555.6 gi|126465490|ref|YP_001040599.1| - 0.056 13.2 0.4 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain Spore_IV_A PF09547.10 gi|126465490|ref|YP_001040599.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) ABC_tran PF00005.27 gi|126465490|ref|YP_001040599.1| - 0.1 13.1 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Hydrolase_4 PF12146.8 gi|126465490|ref|YP_001040599.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.4 1 1 0 1 1 1 0 Serine aminopeptidase, S33 AAA_7 PF12775.7 gi|126465490|ref|YP_001040599.1| - 0.11 12.0 0.1 0.29 10.6 0.0 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region DUF815 PF05673.13 gi|126465490|ref|YP_001040599.1| - 0.11 11.6 0.0 0.29 10.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MMR_HSR1 PF01926.23 gi|126465490|ref|YP_001040599.1| - 0.15 12.2 0.1 0.43 10.7 0.0 1.8 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|126465490|ref|YP_001040599.1| - 0.15 12.0 0.0 2.1 8.4 0.0 2.5 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|126465490|ref|YP_001040599.1| - 0.18 11.0 0.0 0.33 10.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SNO PF01174.19 gi|126465491|ref|YP_001040600.1| - 2.6e-52 177.4 0.0 3e-52 177.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|126465491|ref|YP_001040600.1| - 1e-11 44.8 0.0 1.4e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|126465491|ref|YP_001040600.1| - 5.2e-10 39.4 0.1 1.9e-09 37.6 0.1 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|126465491|ref|YP_001040600.1| - 1.2e-08 34.8 0.0 1.6e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|126465491|ref|YP_001040600.1| - 3.2e-06 27.0 0.2 2.6e-05 24.1 0.1 2.1 2 1 0 2 2 2 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|126465491|ref|YP_001040600.1| - 0.0045 16.8 0.3 0.04 13.7 0.3 2.3 1 1 0 1 1 1 1 Peptidase C26 SOR_SNZ PF01680.17 gi|126465492|ref|YP_001040601.1| - 9.7e-97 322.7 0.7 1.3e-96 322.3 0.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|126465492|ref|YP_001040601.1| - 7e-07 28.8 1.7 2.9e-05 23.5 0.0 2.4 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|126465492|ref|YP_001040601.1| - 0.00081 18.9 0.6 0.17 11.4 0.1 3.0 2 2 1 3 3 3 2 Histidine biosynthesis protein Dus PF01207.17 gi|126465492|ref|YP_001040601.1| - 0.0079 15.3 0.3 0.55 9.3 0.0 2.3 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|126465492|ref|YP_001040601.1| - 0.016 14.6 3.1 0.033 13.6 0.1 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase IGPS PF00218.21 gi|126465492|ref|YP_001040601.1| - 0.025 13.8 0.0 0.85 8.7 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|126465492|ref|YP_001040601.1| - 0.027 13.7 0.1 0.69 9.1 0.0 2.4 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Peptidase_S66C PF17676.1 gi|126465492|ref|YP_001040601.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain TetR_C_27 PF17935.1 gi|126465492|ref|YP_001040601.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain OMPdecase PF00215.24 gi|126465492|ref|YP_001040601.1| - 0.14 11.7 0.0 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PaREP1 PF05942.11 gi|126465493|ref|YP_001040602.1| - 2.6e-29 101.5 1.8 2.6e-29 101.5 1.8 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|126465493|ref|YP_001040602.1| - 8.2e-05 22.7 3.0 8.2e-05 22.7 3.0 1.8 2 0 0 2 2 2 1 HEPN domain RHH_5 PF07878.11 gi|126465493|ref|YP_001040602.1| - 0.00036 20.3 0.2 0.0029 17.4 0.0 2.4 2 0 0 2 2 2 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF357 PF04010.13 gi|126465493|ref|YP_001040602.1| - 0.00058 19.9 0.2 0.002 18.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF357) RHH_1 PF01402.21 gi|126465493|ref|YP_001040602.1| - 0.006 16.5 0.5 0.017 15.0 0.5 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Ribonuc_red_sm PF00268.21 gi|126465493|ref|YP_001040602.1| - 0.027 14.0 0.8 0.054 12.9 0.1 1.7 2 0 0 2 2 2 0 Ribonucleotide reductase, small chain Arc PF03869.14 gi|126465493|ref|YP_001040602.1| - 0.032 14.1 0.6 0.095 12.6 0.0 2.0 2 0 0 2 2 2 0 Arc-like DNA binding domain CopG_antitoxin PF12441.8 gi|126465493|ref|YP_001040602.1| - 0.037 14.6 0.1 0.61 10.7 0.0 2.5 2 0 0 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system FliS PF02561.14 gi|126465493|ref|YP_001040602.1| - 0.048 13.9 1.9 0.098 12.9 0.6 2.0 1 1 1 2 2 2 0 Flagellar protein FliS Paramyx_P_V_C PF03210.13 gi|126465493|ref|YP_001040602.1| - 0.071 12.9 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Paramyxovirus P/V phosphoprotein C-terminal ERp29 PF07749.12 gi|126465493|ref|YP_001040602.1| - 0.091 13.7 2.6 4.1 8.4 0.3 2.9 1 1 2 3 3 3 0 Endoplasmic reticulum protein ERp29, C-terminal domain N6_N4_Mtase PF01555.18 gi|126465494|ref|YP_001040603.1| - 6.6e-29 101.3 0.9 4.8e-17 62.5 0.0 2.3 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|126465494|ref|YP_001040603.1| - 1.4e-09 38.0 0.1 2.6e-08 33.8 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|126465494|ref|YP_001040603.1| - 7.4e-05 23.3 0.0 0.0026 18.4 0.0 2.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465494|ref|YP_001040603.1| - 0.00084 20.0 0.1 6.2 7.6 0.0 3.3 2 1 0 2 2 2 2 Methyltransferase domain Methyltransf_15 PF09445.10 gi|126465494|ref|YP_001040603.1| - 0.044 13.4 0.0 0.12 11.9 0.0 1.8 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase fn3 PF00041.21 gi|126465495|ref|YP_001040604.1| - 3.8e-09 36.8 0.8 3.8e-09 36.8 0.8 2.2 2 0 0 2 2 1 1 Fibronectin type III domain TMEM154 PF15102.6 gi|126465495|ref|YP_001040604.1| - 0.0021 17.9 9.5 0.0056 16.6 9.5 1.7 1 0 0 1 1 1 1 TMEM154 protein family WD40 PF00400.32 gi|126465495|ref|YP_001040604.1| - 0.014 16.2 4.3 15 6.6 0.1 4.7 4 0 0 4 4 4 0 WD domain, G-beta repeat DUF5122 PF17164.4 gi|126465495|ref|YP_001040604.1| - 0.03 14.6 0.2 0.03 14.6 0.2 4.9 5 2 0 5 5 5 0 Domain of unknown function (DUF5122) beta-propeller EVI2A PF05399.11 gi|126465495|ref|YP_001040604.1| - 0.075 12.6 8.9 0.14 11.8 8.9 1.3 1 0 0 1 1 1 0 Ectropic viral integration site 2A protein (EVI2A) Tox-HDC PF15656.6 gi|126465495|ref|YP_001040604.1| - 0.12 12.5 2.5 3 8.1 0.0 3.8 2 2 3 5 5 5 0 Toxin with a H, D/N and C signature MGC-24 PF05283.11 gi|126465495|ref|YP_001040604.1| - 0.14 12.6 13.6 0.069 13.6 11.4 1.5 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF3671 PF12420.8 gi|126465495|ref|YP_001040604.1| - 0.56 10.3 3.0 0.73 9.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function MAGE PF01454.19 gi|126465495|ref|YP_001040604.1| - 1.2 8.8 3.7 2 8.1 3.7 1.2 1 0 0 1 1 1 0 MAGE family NHL PF01436.21 gi|126465495|ref|YP_001040604.1| - 3.9 7.7 14.9 27 5.0 0.1 6.3 7 0 0 7 7 7 0 NHL repeat RIFIN PF02009.16 gi|126465495|ref|YP_001040604.1| - 7 6.4 6.3 10 5.9 6.3 1.1 1 0 0 1 1 1 0 Rifin E1-E2_ATPase PF00122.20 gi|126465496|ref|YP_001040605.1| - 4.6e-51 172.9 4.8 4.6e-51 172.9 4.8 2.5 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|126465496|ref|YP_001040605.1| - 8.9e-45 153.6 2.4 1.2e-44 153.2 1.2 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|126465496|ref|YP_001040605.1| - 2.2e-09 37.4 1.6 0.00052 19.8 0.2 2.6 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|126465496|ref|YP_001040605.1| - 3.9e-05 24.1 0.0 9.2e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126465496|ref|YP_001040605.1| - 0.004 17.2 0.0 0.024 14.8 0.0 2.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126465496|ref|YP_001040605.1| - 0.041 14.0 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Ysc84 PF04366.12 gi|126465496|ref|YP_001040605.1| - 0.1 12.3 0.1 0.98 9.2 0.0 2.2 2 0 0 2 2 2 0 Las17-binding protein actin regulator Sec66 PF09802.9 gi|126465496|ref|YP_001040605.1| - 0.13 11.8 0.1 0.31 10.6 0.1 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit Sec66 GP41 PF00517.17 gi|126465496|ref|YP_001040605.1| - 0.93 9.4 3.1 0.37 10.7 0.2 1.7 2 0 0 2 2 2 0 Retroviral envelope protein TPP_enzyme_C PF02775.21 gi|126465496|ref|YP_001040605.1| - 5.5 6.8 6.1 4.8 6.9 0.1 3.3 2 1 1 3 3 3 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Peptidase_C69 PF03577.15 gi|126465497|ref|YP_001040606.1| - 9.7e-14 51.1 0.3 1e-11 44.5 0.1 2.3 1 1 1 2 2 2 2 Peptidase family C69 AAT PF03417.16 gi|126465497|ref|YP_001040606.1| - 0.00014 21.7 0.0 0.00025 20.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase RMMBL PF07521.12 gi|126465497|ref|YP_001040606.1| - 0.14 12.1 0.0 1.3 9.0 0.0 2.3 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain FCH PF00611.23 gi|126465498|ref|YP_001040607.1| - 3.7e-05 23.9 1.5 8.4e-05 22.8 1.3 1.8 1 1 0 1 1 1 1 Fes/CIP4, and EFC/F-BAR homology domain FA_desaturase_2 PF03405.14 gi|126465498|ref|YP_001040607.1| - 0.0051 15.7 1.0 0.039 12.8 1.1 1.9 1 1 0 1 1 1 1 Fatty acid desaturase Rubrerythrin PF02915.17 gi|126465498|ref|YP_001040607.1| - 0.021 15.2 8.4 0.11 12.9 8.4 2.0 1 1 0 1 1 1 0 Rubrerythrin Mitovir_RNA_pol PF05919.11 gi|126465498|ref|YP_001040607.1| - 0.022 14.0 2.7 0.061 12.5 2.7 1.7 1 1 0 1 1 1 0 Mitovirus RNA-dependent RNA polymerase CortBP2 PF09727.9 gi|126465498|ref|YP_001040607.1| - 0.033 14.1 2.7 0.042 13.8 2.7 1.2 1 0 0 1 1 1 0 Cortactin-binding protein-2 DUF4315 PF14193.6 gi|126465498|ref|YP_001040607.1| - 0.048 13.7 1.4 0.048 13.7 1.4 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4315) DUF2935 PF11155.8 gi|126465498|ref|YP_001040607.1| - 0.073 13.4 2.8 0.13 12.6 2.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) QueH PF02677.14 gi|126465498|ref|YP_001040607.1| - 0.1 12.7 3.9 1.1 9.3 0.2 2.1 1 1 1 2 2 2 0 Epoxyqueuosine reductase QueH RAP80_UIM PF18282.1 gi|126465498|ref|YP_001040607.1| - 0.13 12.1 3.1 10 5.9 0.0 2.6 1 1 1 2 2 2 0 RAP80 N-terminal ubiquitin interaction motif DUF4473 PF14747.6 gi|126465498|ref|YP_001040607.1| - 0.34 11.5 3.5 4.7 7.8 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) Coat_F PF07875.12 gi|126465498|ref|YP_001040607.1| - 0.4 10.9 2.0 6 7.2 0.1 2.7 2 1 1 3 3 3 0 Coat F domain HD_3 PF13023.6 gi|126465499|ref|YP_001040608.1| - 3.5e-20 72.6 0.0 4.2e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|126465499|ref|YP_001040608.1| - 4.8e-13 49.3 0.3 6.2e-13 48.9 0.3 1.1 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme Mer2 PF09074.10 gi|126465499|ref|YP_001040608.1| - 0.00083 19.2 1.0 0.0011 18.9 1.0 1.1 1 0 0 1 1 1 1 Mer2 THP2 PF09432.10 gi|126465499|ref|YP_001040608.1| - 0.0037 17.3 1.3 0.0063 16.6 1.3 1.4 1 0 0 1 1 1 1 Tho complex subunit THP2 HD PF01966.22 gi|126465499|ref|YP_001040608.1| - 0.0063 16.7 0.1 0.015 15.6 0.1 1.6 1 1 0 1 1 1 1 HD domain OmpH PF03938.14 gi|126465499|ref|YP_001040608.1| - 0.0068 16.7 1.1 0.0092 16.3 1.1 1.3 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) B2 PF11473.8 gi|126465499|ref|YP_001040608.1| - 0.013 15.3 0.8 5.4 6.9 0.1 2.7 2 1 1 3 3 3 0 RNA binding protein B2 CotH PF08757.11 gi|126465499|ref|YP_001040608.1| - 0.041 13.4 0.6 0.065 12.7 0.5 1.4 1 1 0 1 1 1 0 CotH kinase protein DUF4535 PF15054.6 gi|126465499|ref|YP_001040608.1| - 0.088 12.6 0.8 0.36 10.6 0.8 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) MitMem_reg PF13012.6 gi|126465499|ref|YP_001040608.1| - 0.096 13.1 1.0 0.19 12.1 1.0 1.5 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function E1-E2_ATPase PF00122.20 gi|126465500|ref|YP_001040609.1| - 6.1e-35 120.4 0.0 6.1e-35 120.4 0.0 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|126465500|ref|YP_001040609.1| - 3.4e-27 96.1 0.4 8.4e-27 94.8 0.1 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|126465500|ref|YP_001040609.1| - 0.0051 16.6 2.7 0.25 11.0 0.0 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126465500|ref|YP_001040609.1| - 0.067 13.3 0.5 0.51 10.4 0.5 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase CCT_2 PF09425.10 gi|126465500|ref|YP_001040609.1| - 0.73 9.8 2.2 2.4 8.1 0.4 2.4 2 0 0 2 2 2 0 Divergent CCT motif Aldo_ket_red PF00248.21 gi|126465501|ref|YP_001040610.1| - 4e-53 180.5 0.0 4.6e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ABC_ATPase PF09818.9 gi|126465502|ref|YP_001040611.1| - 1.1e-147 492.5 0.0 1.3e-147 492.2 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|126465502|ref|YP_001040611.1| - 0.0027 18.2 0.1 0.0054 17.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|126465502|ref|YP_001040611.1| - 0.0049 17.1 0.0 0.019 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|126465502|ref|YP_001040611.1| - 0.066 12.8 0.0 0.13 11.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain DHO_dh PF01180.21 gi|126465503|ref|YP_001040612.1| - 4.4e-44 150.9 0.3 5.2e-44 150.6 0.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|126465503|ref|YP_001040612.1| - 0.091 12.1 0.1 0.19 11.1 0.1 1.5 1 0 0 1 1 1 0 Nitronate monooxygenase IreB PF06135.12 gi|126465503|ref|YP_001040612.1| - 0.16 12.2 0.1 0.33 11.2 0.1 1.4 1 0 0 1 1 1 0 IreB regulatory phosphoprotein IMPDH PF00478.25 gi|126465503|ref|YP_001040612.1| - 6.8 5.6 6.3 0.68 8.9 0.3 2.3 4 1 0 4 4 4 0 IMP dehydrogenase / GMP reductase domain Amidohydro_1 PF01979.20 gi|126465504|ref|YP_001040613.1| - 3.2e-17 62.9 0.0 7.6e-16 58.3 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126465504|ref|YP_001040613.1| - 0.00065 19.3 0.0 0.37 10.2 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DHOase PF12890.7 gi|126465504|ref|YP_001040613.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Dihydro-orotase-like DHODB_Fe-S_bind PF10418.9 gi|126465505|ref|YP_001040614.1| - 5.5e-09 35.7 0.1 1.1e-08 34.7 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|126465505|ref|YP_001040614.1| - 0.0028 18.3 0.0 0.026 15.1 0.0 2.1 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain Fer2_3 PF13085.6 gi|126465505|ref|YP_001040614.1| - 0.065 13.3 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PyrI PF01948.18 gi|126465506|ref|YP_001040615.1| - 1.8e-34 117.9 2.7 3e-34 117.1 2.7 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|126465506|ref|YP_001040615.1| - 4.6e-16 58.5 0.9 9e-16 57.5 0.9 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|126465507|ref|YP_001040616.1| - 1.1e-41 142.3 0.0 2.7e-41 141.0 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|126465507|ref|YP_001040616.1| - 4.4e-21 75.6 0.0 6.7e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pribosyltran PF00156.27 gi|126465508|ref|YP_001040617.1| - 1.2e-17 63.9 0.3 1.5e-17 63.5 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|126465508|ref|YP_001040617.1| - 0.00091 18.7 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Mur_ligase_C PF02875.21 gi|126465508|ref|YP_001040617.1| - 0.11 12.8 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain OMPdecase PF00215.24 gi|126465509|ref|YP_001040618.1| - 2.5e-21 76.3 0.0 2.9e-21 76.1 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CTP_synth_N PF06418.14 gi|126465510|ref|YP_001040619.1| - 8.2e-121 402.3 2.5 1.1e-120 401.9 2.5 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|126465510|ref|YP_001040619.1| - 2.4e-45 154.7 0.0 4e-45 153.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|126465510|ref|YP_001040619.1| - 2.3e-07 30.8 0.0 6.6e-07 29.3 0.0 1.8 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|126465510|ref|YP_001040619.1| - 0.049 13.7 0.0 0.072 13.1 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pribosyltran PF00156.27 gi|126465511|ref|YP_001040620.1| - 7.8e-22 77.5 0.0 1e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|126465511|ref|YP_001040620.1| - 0.0028 17.1 0.0 0.0067 15.9 0.0 1.6 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase CBS PF00571.28 gi|126465513|ref|YP_001040622.1| - 4e-46 155.3 34.2 1.6e-11 44.4 1.8 8.2 8 1 0 8 8 8 5 CBS domain IF3_N PF05198.16 gi|126465513|ref|YP_001040622.1| - 0.00045 20.4 4.3 0.31 11.3 0.2 4.0 3 0 0 3 3 3 1 Translation initiation factor IF-3, N-terminal domain Acetyltransf_1 PF00583.25 gi|126465513|ref|YP_001040622.1| - 0.02 15.2 0.1 23 5.3 0.0 3.7 3 1 1 4 4 4 0 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|126465513|ref|YP_001040622.1| - 0.027 14.4 0.0 17 5.3 0.0 3.3 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|126465513|ref|YP_001040622.1| - 0.11 12.6 0.0 1.8 8.7 0.0 2.7 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain DUF1858 PF08984.11 gi|126465513|ref|YP_001040622.1| - 0.13 12.5 0.0 11 6.3 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) PRC PF05239.16 gi|126465513|ref|YP_001040622.1| - 0.28 11.3 2.7 15 5.8 0.1 3.4 2 1 0 2 2 2 0 PRC-barrel domain DUF3659 PF12396.8 gi|126465513|ref|YP_001040622.1| - 0.32 10.9 3.6 45 4.1 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) Translin PF01997.16 gi|126465514|ref|YP_001040623.1| - 8.8e-08 32.4 0.1 2.8e-06 27.5 0.1 2.2 1 1 0 1 1 1 1 Translin family SRP_TPR_like PF17004.5 gi|126465514|ref|YP_001040623.1| - 0.015 15.4 0.9 0.03 14.3 0.4 1.7 2 0 0 2 2 2 0 Putative TPR-like repeat TPR_2 PF07719.17 gi|126465514|ref|YP_001040623.1| - 0.046 13.9 0.1 37 4.8 0.0 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat PPR PF01535.20 gi|126465514|ref|YP_001040623.1| - 0.051 13.8 0.4 7.4 7.1 0.1 3.5 3 0 0 3 3 3 0 PPR repeat TPR_1 PF00515.28 gi|126465514|ref|YP_001040623.1| - 0.16 11.8 2.7 1.2e+02 2.8 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF4346 PF14251.6 gi|126465516|ref|YP_001040625.1| - 0.068 13.2 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) PIN_9 PF18477.1 gi|126465517|ref|YP_001040626.1| - 0.024 15.0 0.4 0.037 14.3 0.4 1.2 1 0 0 1 1 1 0 PIN like domain SpoVT_C PF15714.5 gi|126465517|ref|YP_001040626.1| - 0.038 14.0 0.0 0.052 13.6 0.0 1.3 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor BALF1 PF06861.11 gi|126465517|ref|YP_001040626.1| - 0.068 12.8 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 BALF1 protein HTH_3 PF01381.22 gi|126465518|ref|YP_001040627.1| - 2.9e-07 30.4 0.0 6e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|126465518|ref|YP_001040627.1| - 4.7e-05 23.6 0.0 0.00011 22.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|126465518|ref|YP_001040627.1| - 0.0012 18.8 0.2 0.0022 17.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|126465518|ref|YP_001040627.1| - 0.0043 17.1 0.0 0.0072 16.4 0.0 1.3 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Alpha-amylase PF00128.24 gi|126465519|ref|YP_001040628.1| - 5.7e-61 206.9 0.8 8.9e-61 206.3 0.8 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|126465519|ref|YP_001040628.1| - 0.0012 19.0 0.1 0.0026 17.9 0.1 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase Malt_amylase_C PF16657.5 gi|126465519|ref|YP_001040628.1| - 0.085 13.0 0.0 0.52 10.5 0.0 2.1 2 0 0 2 2 2 0 Maltogenic Amylase, C-terminal domain DUF2848 PF11010.8 gi|126465519|ref|YP_001040628.1| - 0.2 11.2 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2848) CbiX PF01903.17 gi|126465519|ref|YP_001040628.1| - 0.21 11.9 0.0 0.74 10.2 0.0 1.8 2 0 0 2 2 2 0 CbiX Voltage_CLC PF00654.20 gi|126465520|ref|YP_001040629.1| - 8.4e-63 212.8 22.5 8.4e-63 212.8 22.5 1.9 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|126465520|ref|YP_001040629.1| - 1.6e-11 44.5 0.7 4.5e-05 23.8 0.2 2.6 1 1 1 2 2 2 2 CBS domain Ribosomal_S27e PF01667.17 gi|126465521|ref|YP_001040630.1| - 7.7e-19 67.2 1.1 8.7e-19 67.0 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|126465521|ref|YP_001040630.1| - 8.2e-05 22.0 2.0 0.00014 21.3 2.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.15 gi|126465521|ref|YP_001040630.1| - 0.0072 16.3 1.7 1.4 9.0 0.3 2.2 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger HypA PF01155.19 gi|126465521|ref|YP_001040630.1| - 0.012 15.6 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|126465521|ref|YP_001040630.1| - 0.037 14.2 0.6 0.89 9.8 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-UDP PF14569.6 gi|126465521|ref|YP_001040630.1| - 0.037 14.1 0.4 0.043 13.9 0.4 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger DNA_RNApol_7kD PF03604.13 gi|126465521|ref|YP_001040630.1| - 0.037 13.7 4.6 0.16 11.7 4.6 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_9 PF13901.6 gi|126465521|ref|YP_001040630.1| - 0.04 13.9 0.5 0.05 13.6 0.5 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon DZR PF12773.7 gi|126465521|ref|YP_001040630.1| - 0.045 13.8 0.2 0.061 13.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|126465521|ref|YP_001040630.1| - 0.06 13.3 0.5 5 7.1 0.5 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2H2_3 PF13878.6 gi|126465521|ref|YP_001040630.1| - 0.075 12.9 0.3 9 6.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_2 PF13240.6 gi|126465521|ref|YP_001040630.1| - 0.076 12.8 2.1 0.27 11.0 2.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|126465521|ref|YP_001040630.1| - 0.11 12.5 0.2 0.15 12.1 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon Zn-ribbon_8 PF09723.10 gi|126465521|ref|YP_001040630.1| - 0.11 12.6 1.0 0.46 10.6 1.2 1.7 1 1 1 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|126465521|ref|YP_001040630.1| - 0.12 12.1 1.0 4.5 7.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|126465521|ref|YP_001040630.1| - 0.22 11.3 4.5 2.7 7.8 4.5 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|126465521|ref|YP_001040630.1| - 2.7 8.0 6.4 98 3.0 0.5 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.6 gi|126465521|ref|YP_001040630.1| - 2.9 7.9 5.1 4.4 7.3 0.3 2.1 1 1 1 2 2 2 0 Probable zinc-ribbon domain Ribosomal_L44 PF00935.19 gi|126465522|ref|YP_001040631.1| - 1.5e-25 89.5 11.9 2e-25 89.0 11.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 RNA_POL_M_15KD PF02150.16 gi|126465522|ref|YP_001040631.1| - 0.00089 19.1 1.1 0.12 12.3 0.1 2.3 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit zf-FPG_IleRS PF06827.14 gi|126465522|ref|YP_001040631.1| - 0.099 12.5 5.4 0.27 11.1 0.7 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|126465522|ref|YP_001040631.1| - 0.1 12.4 2.5 2.9 7.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|126465522|ref|YP_001040631.1| - 0.31 11.1 2.8 1 9.4 2.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|126465522|ref|YP_001040631.1| - 0.32 11.0 4.1 2.2 8.2 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|126465522|ref|YP_001040631.1| - 0.35 11.3 0.8 0.35 11.3 0.8 3.2 2 1 1 3 3 3 0 Ribosomal protein L33 Mu-like_Com PF10122.9 gi|126465522|ref|YP_001040631.1| - 2.7 7.5 6.5 3.5 7.1 0.2 2.4 2 1 0 2 2 2 0 Mu-like prophage protein Com CarS-like PF01864.17 gi|126465523|ref|YP_001040632.1| - 2.3e-30 105.8 8.2 6.4e-30 104.4 8.2 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|126465523|ref|YP_001040632.1| - 3.9e-08 33.4 2.3 3.9e-08 33.4 2.3 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family ATPase PF06745.13 gi|126465524|ref|YP_001040633.1| - 1.6e-08 34.2 0.0 3.7e-06 26.5 0.0 2.3 1 1 1 2 2 2 2 KaiC Rad51 PF08423.11 gi|126465524|ref|YP_001040633.1| - 4e-06 26.3 0.0 1.7e-05 24.3 0.0 1.9 2 1 0 2 2 2 1 Rad51 AAA_24 PF13479.6 gi|126465524|ref|YP_001040633.1| - 4.7e-06 26.5 0.0 9.9e-06 25.4 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|126465524|ref|YP_001040633.1| - 0.00027 21.4 0.0 0.00035 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|126465524|ref|YP_001040633.1| - 0.00027 20.9 0.0 0.00042 20.3 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|126465524|ref|YP_001040633.1| - 0.00042 19.9 0.0 0.00066 19.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|126465524|ref|YP_001040633.1| - 0.0055 16.7 0.0 0.0089 16.0 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.6 gi|126465524|ref|YP_001040633.1| - 0.0092 16.0 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|126465524|ref|YP_001040633.1| - 0.014 15.9 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 gi|126465524|ref|YP_001040633.1| - 0.016 15.6 0.0 0.03 14.7 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126465524|ref|YP_001040633.1| - 0.02 15.2 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|126465524|ref|YP_001040633.1| - 0.031 14.0 0.1 0.067 12.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|126465524|ref|YP_001040633.1| - 0.032 13.7 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|126465524|ref|YP_001040633.1| - 0.033 13.4 0.0 0.38 9.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|126465524|ref|YP_001040633.1| - 0.043 13.6 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial dnaA protein DnaB_C PF03796.15 gi|126465524|ref|YP_001040633.1| - 0.051 12.9 0.0 0.067 12.5 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|126465524|ref|YP_001040633.1| - 0.064 11.9 0.0 0.078 11.6 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein PduV-EutP PF10662.9 gi|126465524|ref|YP_001040633.1| - 0.064 13.0 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|126465524|ref|YP_001040633.1| - 0.064 13.0 0.0 0.099 12.4 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|126465524|ref|YP_001040633.1| - 0.073 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|126465524|ref|YP_001040633.1| - 0.1 13.0 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase RecA PF00154.21 gi|126465524|ref|YP_001040633.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein TIP49 PF06068.13 gi|126465524|ref|YP_001040633.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain TsaE PF02367.17 gi|126465524|ref|YP_001040633.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|126465524|ref|YP_001040633.1| - 0.17 10.9 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|126465524|ref|YP_001040633.1| - 0.21 11.3 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|126465524|ref|YP_001040633.1| - 0.22 10.9 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein Pyr_redox_2 PF07992.14 gi|126465525|ref|YP_001040634.1| - 0.0042 16.4 0.0 0.012 14.9 0.0 1.7 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase RuvX PF03652.15 gi|126465525|ref|YP_001040634.1| - 0.087 13.2 0.0 0.25 11.7 0.0 1.7 2 0 0 2 2 2 0 Holliday junction resolvase Pyr_redox PF00070.27 gi|126465525|ref|YP_001040634.1| - 0.089 13.4 0.2 0.24 12.0 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CLP1_P PF16575.5 gi|126465526|ref|YP_001040635.1| - 1e-34 120.0 0.0 1.8e-34 119.2 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CLP1_N PF16573.5 gi|126465526|ref|YP_001040635.1| - 0.0082 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 N-terminal beta-sandwich domain of polyadenylation factor AAA_24 PF13479.6 gi|126465526|ref|YP_001040635.1| - 0.033 13.9 0.0 0.08 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain UbiD PF01977.16 gi|126465527|ref|YP_001040636.1| - 3e-78 263.5 0.0 3.5e-78 263.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.13 gi|126465528|ref|YP_001040637.1| - 2.4e-115 385.5 0.0 2.7e-115 385.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|126465529|ref|YP_001040638.1| - 3.1e-23 81.3 0.0 4.7e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain TGBp3 PF02495.17 gi|126465529|ref|YP_001040638.1| - 0.038 13.6 0.4 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Triple gene block 3 Glyco_hydro_68 PF02435.16 gi|126465529|ref|YP_001040638.1| - 0.15 10.9 0.0 0.19 10.6 0.0 1.0 1 0 0 1 1 1 0 Levansucrase/Invertase Thymidylate_kin PF02223.17 gi|126465530|ref|YP_001040639.1| - 5.6e-41 140.3 0.0 6.4e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|126465530|ref|YP_001040639.1| - 3.4e-06 27.4 0.0 4.1e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|126465530|ref|YP_001040639.1| - 0.00011 22.1 0.9 0.0011 18.9 0.9 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|126465530|ref|YP_001040639.1| - 0.0015 19.1 0.0 0.0044 17.6 0.0 1.8 1 1 1 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|126465530|ref|YP_001040639.1| - 0.02 14.8 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.10 gi|126465530|ref|YP_001040639.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_17 PF13207.6 gi|126465530|ref|YP_001040639.1| - 0.15 12.5 0.0 0.76 10.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain Auto_anti-p27 PF06677.12 gi|126465531|ref|YP_001040640.1| - 9e-14 51.4 0.4 1.2e-13 50.9 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) KAP_NTPase PF07693.14 gi|126465531|ref|YP_001040640.1| - 0.0056 16.0 0.1 0.0056 16.0 0.1 1.1 1 0 0 1 1 1 1 KAP family P-loop domain Rieske PF00355.26 gi|126465531|ref|YP_001040640.1| - 0.036 14.0 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain UPF0147 PF03685.13 gi|126465532|ref|YP_001040641.1| - 6.9e-36 122.2 2.6 7.9e-36 122.0 2.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|126465532|ref|YP_001040641.1| - 0.034 14.4 0.2 5.6 7.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) DUF402 PF04167.13 gi|126465533|ref|YP_001040642.1| - 1.9e-14 53.6 0.5 3.9e-14 52.6 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|126465533|ref|YP_001040642.1| - 7.5e-09 35.4 0.0 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family UPF0020 PF01170.18 gi|126465534|ref|YP_001040643.1| - 2.2e-48 164.6 0.0 5.3e-48 163.3 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|126465534|ref|YP_001040643.1| - 5.5e-14 52.5 1.2 5.7e-14 52.4 0.3 1.5 2 0 0 2 2 1 1 THUMP domain MTS PF05175.14 gi|126465534|ref|YP_001040643.1| - 6.3e-11 42.1 0.0 9.7e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|126465534|ref|YP_001040643.1| - 6.5e-08 32.5 0.0 1.1e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465534|ref|YP_001040643.1| - 1.3e-06 29.0 0.0 8.2e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.16 gi|126465534|ref|YP_001040643.1| - 2e-06 27.3 0.0 3.5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|126465534|ref|YP_001040643.1| - 0.00027 21.5 0.0 0.00095 19.8 0.0 2.0 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|126465534|ref|YP_001040643.1| - 0.0015 18.1 0.0 0.0036 16.9 0.0 1.6 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|126465534|ref|YP_001040643.1| - 0.0021 17.8 0.1 0.064 13.0 0.0 2.2 2 0 0 2 2 2 1 DNA methylase PrmA PF06325.13 gi|126465534|ref|YP_001040643.1| - 0.0032 16.9 0.0 0.0055 16.1 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|126465534|ref|YP_001040643.1| - 0.0035 17.1 0.0 0.0097 15.7 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|126465534|ref|YP_001040643.1| - 0.02 15.6 0.0 0.13 13.1 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126465534|ref|YP_001040643.1| - 0.027 13.8 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Ribosomal_L16 PF00252.18 gi|126465535|ref|YP_001040644.1| - 7.4e-41 139.3 0.1 8.3e-41 139.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.17 gi|126465536|ref|YP_001040645.1| - 5.1e-70 236.3 0.2 6.1e-70 236.0 0.2 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF2007 PF09413.10 gi|126465536|ref|YP_001040645.1| - 0.062 13.5 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein SDH_sah PF01972.16 gi|126465537|ref|YP_001040646.1| - 9.3e-63 211.9 0.6 1.1e-62 211.6 0.6 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase AntA PF08346.12 gi|126465537|ref|YP_001040646.1| - 0.079 13.5 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 AntA/AntB antirepressor MTS PF05175.14 gi|126465538|ref|YP_001040647.1| - 6.8e-07 29.0 0.0 9.8e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|126465538|ref|YP_001040647.1| - 2.8e-06 27.2 0.0 3.7e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|126465538|ref|YP_001040647.1| - 1.5e-05 24.1 0.0 1.9e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|126465538|ref|YP_001040647.1| - 7.2e-05 22.3 0.2 8.9e-05 22.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|126465538|ref|YP_001040647.1| - 0.00022 21.0 0.0 0.00027 20.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|126465538|ref|YP_001040647.1| - 0.00024 21.8 0.0 0.00045 20.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126465538|ref|YP_001040647.1| - 0.00048 19.8 0.0 0.00071 19.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 gi|126465538|ref|YP_001040647.1| - 0.007 16.4 0.0 0.0079 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126465538|ref|YP_001040647.1| - 0.0089 16.8 0.0 0.014 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|126465538|ref|YP_001040647.1| - 0.013 14.7 0.0 0.017 14.4 0.0 1.1 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Methyltransf_11 PF08241.12 gi|126465538|ref|YP_001040647.1| - 0.13 12.9 0.0 0.21 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ECR1_N PF14382.6 gi|126465539|ref|YP_001040648.1| - 4.8e-09 35.9 0.1 1e-08 34.8 0.1 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.9 gi|126465539|ref|YP_001040648.1| - 5.7e-06 26.9 0.3 0.0065 17.1 0.0 2.4 1 1 1 2 2 2 2 Exosome component EXOSC1/CSL4 S1 PF00575.23 gi|126465539|ref|YP_001040648.1| - 1.1e-05 25.7 0.1 0.00019 21.7 0.1 2.3 1 1 0 1 1 1 1 S1 RNA binding domain RNA_POL_M_15KD PF02150.16 gi|126465539|ref|YP_001040648.1| - 0.00032 20.5 1.3 0.0006 19.6 1.3 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Prok-RING_1 PF14446.6 gi|126465539|ref|YP_001040648.1| - 0.0004 20.3 0.9 0.00073 19.4 0.9 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|126465539|ref|YP_001040648.1| - 0.0031 17.5 0.2 0.0051 16.8 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|126465539|ref|YP_001040648.1| - 0.0045 16.7 0.8 0.008 15.9 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|126465539|ref|YP_001040648.1| - 0.0069 16.4 0.1 0.012 15.7 0.1 1.5 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|126465539|ref|YP_001040648.1| - 0.0081 16.1 0.4 0.013 15.4 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|126465539|ref|YP_001040648.1| - 0.011 15.3 0.3 0.02 14.5 0.3 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|126465539|ref|YP_001040648.1| - 0.022 14.2 3.1 0.12 11.8 3.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|126465539|ref|YP_001040648.1| - 0.022 14.9 0.4 0.046 13.9 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like A2L_zn_ribbon PF08792.10 gi|126465539|ref|YP_001040648.1| - 0.053 13.3 1.6 0.19 11.5 1.6 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain RecR PF02132.15 gi|126465539|ref|YP_001040648.1| - 0.079 12.5 0.7 0.14 11.7 0.7 1.3 1 0 0 1 1 1 0 RecR protein Zn-ribbon_8 PF09723.10 gi|126465539|ref|YP_001040648.1| - 0.1 12.7 1.5 0.42 10.8 1.5 1.9 1 1 0 1 1 1 0 Zinc ribbon domain 2-oxogl_dehyd_N PF16078.5 gi|126465539|ref|YP_001040648.1| - 0.19 11.3 0.2 0.34 10.5 0.2 1.4 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase N-terminus Auto_anti-p27 PF06677.12 gi|126465539|ref|YP_001040648.1| - 0.2 11.8 1.1 0.33 11.1 1.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|126465539|ref|YP_001040648.1| - 0.61 9.6 4.7 13 5.4 0.8 2.3 1 1 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|126465539|ref|YP_001040648.1| - 1.7 8.6 4.3 15 5.6 4.3 2.1 1 1 0 1 1 1 0 Nudix N-terminal DUF2067 PF09840.9 gi|126465540|ref|YP_001040649.1| - 5.1e-43 146.8 4.9 6.3e-43 146.5 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Phage_ABA_S PF18066.1 gi|126465540|ref|YP_001040649.1| - 0.013 16.2 1.7 1.2 9.8 0.1 2.5 1 1 1 2 2 2 0 Phage ABA sandwich domain RNA_pol_L_2 PF13656.6 gi|126465541|ref|YP_001040650.1| - 2.9e-19 68.6 0.1 3.5e-19 68.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.18 gi|126465542|ref|YP_001040651.1| - 3.5e-21 74.8 8.6 6e-20 70.8 3.2 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|126465542|ref|YP_001040651.1| - 6.1e-06 26.1 4.2 0.00032 20.6 2.2 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|126465542|ref|YP_001040651.1| - 0.0002 21.3 0.3 0.007 16.4 0.5 2.2 1 1 1 2 2 2 1 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|126465542|ref|YP_001040651.1| - 0.00044 20.1 4.2 0.75 9.8 0.0 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|126465542|ref|YP_001040651.1| - 0.00052 19.6 7.2 0.37 10.6 0.2 3.3 3 0 0 3 3 3 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|126465542|ref|YP_001040651.1| - 0.0021 17.5 7.9 0.56 9.8 1.3 3.3 3 1 1 4 4 3 3 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|126465542|ref|YP_001040651.1| - 0.003 17.6 5.6 3.1 8.0 0.1 3.3 3 0 0 3 3 3 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|126465542|ref|YP_001040651.1| - 0.0038 17.1 7.1 0.86 9.5 0.2 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|126465542|ref|YP_001040651.1| - 0.0061 16.7 8.3 0.39 10.9 0.2 3.2 3 0 0 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UPF0547 PF10571.9 gi|126465542|ref|YP_001040651.1| - 0.0069 16.5 9.7 0.18 11.9 0.3 3.2 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|126465542|ref|YP_001040651.1| - 0.013 15.4 7.5 0.1 12.5 2.0 2.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|126465542|ref|YP_001040651.1| - 0.029 14.4 2.9 0.1 12.6 0.3 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|126465542|ref|YP_001040651.1| - 0.036 14.2 6.6 10 6.4 0.1 3.2 3 0 0 3 3 3 0 Ribosomal protein L37e zf-Mss51 PF13824.6 gi|126465542|ref|YP_001040651.1| - 0.045 13.9 5.1 14 5.9 0.5 3.2 2 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_15 PF17032.5 gi|126465542|ref|YP_001040651.1| - 0.064 14.0 4.2 1.9 9.3 4.2 2.4 1 1 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|126465542|ref|YP_001040651.1| - 0.074 13.0 6.0 14 5.7 0.1 3.7 4 0 0 4 4 4 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|126465542|ref|YP_001040651.1| - 0.083 13.3 4.3 3.3 8.1 1.2 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|126465542|ref|YP_001040651.1| - 0.1 12.3 9.4 2.9 7.6 0.2 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|126465542|ref|YP_001040651.1| - 0.11 12.1 7.0 3.9 7.2 0.0 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Terminase_GpA PF05876.12 gi|126465542|ref|YP_001040651.1| - 0.12 10.9 3.1 0.54 8.7 1.7 1.9 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.6 gi|126465542|ref|YP_001040651.1| - 0.13 11.7 8.1 0.54 9.8 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|126465542|ref|YP_001040651.1| - 0.25 11.2 3.8 1.8 8.4 0.2 2.8 1 1 2 3 3 3 0 Domain found in IF2B/IF5 CpXC PF14353.6 gi|126465542|ref|YP_001040651.1| - 0.25 11.4 6.6 4.5 7.3 0.3 2.9 1 1 0 3 3 3 0 CpXC protein zf-H2C2_2 PF13465.6 gi|126465542|ref|YP_001040651.1| - 0.32 11.5 5.8 3.7 8.2 0.0 3.1 3 0 0 3 3 3 0 Zinc-finger double domain zf-ZPR1 PF03367.13 gi|126465542|ref|YP_001040651.1| - 0.48 10.3 2.1 8.8 6.2 0.3 2.3 2 1 0 2 2 2 0 ZPR1 zinc-finger domain DUF2387 PF09526.10 gi|126465542|ref|YP_001040651.1| - 0.61 10.3 4.9 11 6.3 1.6 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zn-ribbon_14 PF16503.5 gi|126465542|ref|YP_001040651.1| - 0.64 9.6 14.3 2.4 7.7 0.9 3.2 3 0 0 3 3 3 0 Zinc-ribbon A2L_zn_ribbon PF08792.10 gi|126465542|ref|YP_001040651.1| - 0.81 9.5 6.1 13 5.6 0.2 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain Rubredoxin_2 PF18073.1 gi|126465542|ref|YP_001040651.1| - 1.2 9.0 12.4 5.8 6.7 1.9 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain Baculo_LEF5_C PF11792.8 gi|126465542|ref|YP_001040651.1| - 1.4 8.6 7.1 0.52 10.0 0.7 2.9 2 1 1 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-CSL PF05207.13 gi|126465542|ref|YP_001040651.1| - 1.5 8.6 11.5 0.47 10.2 2.6 2.8 1 1 0 2 2 2 0 CSL zinc finger Rubredoxin PF00301.20 gi|126465542|ref|YP_001040651.1| - 1.8 8.7 9.5 11 6.2 1.7 3.1 3 0 0 3 3 3 0 Rubredoxin zf_C2H2_10 PF18414.1 gi|126465542|ref|YP_001040651.1| - 2.3 7.8 5.7 0.98 9.0 0.5 2.6 3 0 0 3 3 3 0 C2H2 type zinc-finger Zn_ribbon_SprT PF17283.2 gi|126465542|ref|YP_001040651.1| - 2.5 8.1 13.1 5.5 7.0 5.8 2.7 2 1 0 2 2 2 0 SprT-like zinc ribbon domain OrsD PF12013.8 gi|126465542|ref|YP_001040651.1| - 2.6 8.5 5.6 18 5.8 0.2 2.7 1 1 2 3 3 3 0 Orsellinic acid/F9775 biosynthesis cluster protein D DUF2688 PF10892.8 gi|126465542|ref|YP_001040651.1| - 4.9 6.7 5.8 15 5.1 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2688) zf-HIT PF04438.16 gi|126465542|ref|YP_001040651.1| - 6.9 6.6 13.2 8.2 6.4 0.5 3.1 3 0 0 3 3 3 0 HIT zinc finger Ogr_Delta PF04606.12 gi|126465542|ref|YP_001040651.1| - 8.5 6.5 10.4 5.9 6.9 0.1 2.8 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger PCNA_N PF00705.18 gi|126465543|ref|YP_001040652.1| - 1.3e-13 50.8 0.0 2.3e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|126465543|ref|YP_001040652.1| - 8.8e-10 38.8 0.0 1.5e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|126465543|ref|YP_001040652.1| - 0.00026 20.2 0.0 0.003 16.7 0.1 2.0 2 0 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 DUF2203 PF09969.9 gi|126465543|ref|YP_001040652.1| - 0.048 14.4 0.0 13 6.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DNA_primase_S PF01896.19 gi|126465544|ref|YP_001040653.1| - 5.9e-15 55.8 1.6 1.5e-13 51.1 0.1 2.5 2 0 0 2 2 2 2 DNA primase small subunit DUF2207 PF09972.9 gi|126465546|ref|YP_001040655.1| - 5.1 5.7 5.7 4.1 6.1 4.9 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) EIF_2_alpha PF07541.12 gi|126465548|ref|YP_001040657.1| - 1.5e-22 79.9 0.0 5.3e-22 78.1 0.0 1.9 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|126465548|ref|YP_001040657.1| - 7.7e-13 48.6 0.2 2.7e-12 46.8 0.1 1.9 2 0 0 2 2 2 1 S1 RNA binding domain DUF3337 PF11816.8 gi|126465548|ref|YP_001040657.1| - 0.022 14.6 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) S1_2 PF13509.6 gi|126465548|ref|YP_001040657.1| - 0.077 13.1 0.0 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 S1 domain Nop10p PF04135.12 gi|126465549|ref|YP_001040658.1| - 2.4e-24 85.1 1.1 2.7e-24 84.9 1.1 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.11 gi|126465549|ref|YP_001040658.1| - 0.0076 16.3 1.7 0.01 15.9 1.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Fer4 PF00037.27 gi|126465549|ref|YP_001040658.1| - 0.022 14.6 1.6 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_L32p PF01783.23 gi|126465549|ref|YP_001040658.1| - 0.047 13.9 3.0 0.08 13.2 3.0 1.4 1 1 0 1 1 1 0 Ribosomal L32p protein family RecR PF02132.15 gi|126465549|ref|YP_001040658.1| - 0.066 12.8 0.6 0.092 12.3 0.6 1.2 1 0 0 1 1 1 0 RecR protein DUF1258 PF06869.12 gi|126465549|ref|YP_001040658.1| - 0.081 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-ribbon_3 PF13248.6 gi|126465549|ref|YP_001040658.1| - 0.1 12.0 2.0 0.28 10.6 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|126465549|ref|YP_001040658.1| - 2.6 7.9 6.8 43 4.0 6.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|126465549|ref|YP_001040658.1| - 3.3 7.2 6.3 1.9 8.0 2.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com Proton_antipo_M PF00361.20 gi|126465550|ref|YP_001040659.1| - 2.8e-51 174.5 22.0 2.8e-51 174.5 22.0 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q6 PF01058.22 gi|126465551|ref|YP_001040660.1| - 1.1e-16 60.9 0.0 1.4e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.19 gi|126465552|ref|YP_001040661.1| - 4.3e-27 95.2 0.0 6e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|126465553|ref|YP_001040662.1| - 8.2e-62 208.7 0.0 2.5e-50 171.1 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|126465553|ref|YP_001040662.1| - 0.00031 19.8 0.0 0.00095 18.2 0.0 1.8 2 0 0 2 2 2 1 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|126465554|ref|YP_001040663.1| - 1e-17 63.1 12.1 7.7e-10 38.2 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465554|ref|YP_001040663.1| - 1.1e-13 51.0 17.8 7.6e-10 38.8 9.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126465554|ref|YP_001040663.1| - 1.5e-12 47.9 9.0 2.6e-12 47.1 9.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465554|ref|YP_001040663.1| - 3.3e-11 44.0 5.2 2.6e-05 25.1 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|126465554|ref|YP_001040663.1| - 5.6e-11 42.4 18.5 1.4e-07 31.5 9.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126465554|ref|YP_001040663.1| - 7e-11 42.1 7.3 1.1e-10 41.5 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465554|ref|YP_001040663.1| - 1.1e-10 41.1 14.4 1.2e-05 25.2 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126465554|ref|YP_001040663.1| - 3.3e-10 39.4 11.9 2.4e-05 24.2 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126465554|ref|YP_001040663.1| - 5.8e-09 36.4 3.1 0.00092 19.7 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126465554|ref|YP_001040663.1| - 1.9e-08 34.6 29.9 2.7e-05 24.5 11.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126465554|ref|YP_001040663.1| - 9.2e-08 32.0 9.7 0.00029 21.1 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|126465554|ref|YP_001040663.1| - 3.1e-06 27.7 19.0 0.0014 19.4 5.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126465554|ref|YP_001040663.1| - 0.00069 20.3 9.8 0.013 16.2 0.1 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|126465554|ref|YP_001040663.1| - 0.001 19.2 1.2 0.52 10.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126465554|ref|YP_001040663.1| - 0.0013 19.2 12.3 0.063 13.8 1.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|126465554|ref|YP_001040663.1| - 0.13 12.4 0.4 0.13 12.4 0.4 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|126465554|ref|YP_001040663.1| - 0.17 12.8 10.9 1.9 9.4 1.1 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain MrpF_PhaF PF04066.13 gi|126465555|ref|YP_001040664.1| - 2.2e-09 37.6 4.2 2.2e-09 37.6 4.2 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.14 gi|126465556|ref|YP_001040665.1| - 1.4e-17 63.7 7.2 1.9e-17 63.3 7.2 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.6 gi|126465557|ref|YP_001040666.1| - 1.2e-10 41.4 9.3 1.6e-10 40.9 9.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|126465557|ref|YP_001040666.1| - 0.0049 16.6 1.9 0.0049 16.6 1.9 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TCR_zetazeta PF11628.8 gi|126465557|ref|YP_001040666.1| - 0.0086 15.7 2.0 0.0086 15.7 2.0 1.9 2 0 0 2 2 2 1 T-cell surface glycoprotein CD3 zeta chain DUF2070 PF09843.9 gi|126465557|ref|YP_001040666.1| - 0.016 13.5 6.2 0.016 13.5 6.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Rnf-Nqr PF02508.14 gi|126465557|ref|YP_001040666.1| - 0.041 13.9 4.9 0.073 13.1 4.9 1.4 1 1 0 1 1 1 0 Rnf-Nqr subunit, membrane protein MnhB PF04039.13 gi|126465558|ref|YP_001040667.1| - 3.1e-15 56.6 17.1 3.1e-15 56.6 17.1 2.3 2 2 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.9 gi|126465558|ref|YP_001040667.1| - 0.015 14.9 0.0 0.015 14.9 0.0 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.24 gi|126465559|ref|YP_001040668.1| - 5.4e-20 71.0 4.3 6.8e-20 70.7 4.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Mtc PF03820.17 gi|126465559|ref|YP_001040668.1| - 0.15 11.1 0.2 0.39 9.7 0.2 1.8 1 1 0 1 1 1 0 Tricarboxylate carrier Jagunal PF07086.12 gi|126465559|ref|YP_001040668.1| - 1.3 9.1 4.6 2.4 8.2 4.6 1.6 1 1 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis MNHE PF01899.16 gi|126465560|ref|YP_001040669.1| - 1e-39 135.6 2.4 1.1e-39 135.5 2.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Pex2_Pex12 PF04757.14 gi|126465560|ref|YP_001040669.1| - 0.11 12.1 0.7 0.21 11.2 0.7 1.5 1 1 0 1 1 1 0 Pex2 / Pex12 amino terminal region Yip1 PF04893.17 gi|126465561|ref|YP_001040670.1| - 0.011 15.5 1.8 0.18 11.5 0.2 2.0 2 0 0 2 2 2 0 Yip1 domain SNARE_assoc PF09335.11 gi|126465561|ref|YP_001040670.1| - 0.034 14.6 1.2 0.076 13.5 1.2 1.7 1 1 0 1 1 1 0 SNARE associated Golgi protein NADHdh PF00146.21 gi|126465562|ref|YP_001040671.1| - 4.2e-64 216.7 24.2 5.2e-64 216.4 24.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase CitMHS PF03600.16 gi|126465563|ref|YP_001040672.1| - 1.8e-48 165.3 19.0 1.8e-48 165.3 19.0 1.9 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|126465563|ref|YP_001040672.1| - 2.6e-13 49.9 39.6 2.5e-07 30.1 13.8 2.2 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region ArsB PF02040.15 gi|126465563|ref|YP_001040672.1| - 1.1e-10 41.4 29.0 1.4e-10 41.1 29.0 1.1 1 0 0 1 1 1 1 Arsenical pump membrane protein DctM PF06808.12 gi|126465563|ref|YP_001040672.1| - 1.3e-08 34.1 32.2 5.1e-06 25.6 7.1 2.2 1 1 1 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component Na_H_Exchanger PF00999.21 gi|126465564|ref|YP_001040673.1| - 1.3e-47 162.4 42.2 1.7e-47 162.1 42.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Cyclase_polyket PF04673.12 gi|126465565|ref|YP_001040674.1| - 0.12 12.6 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 Polyketide synthesis cyclase SBF PF01758.16 gi|126465566|ref|YP_001040675.1| - 5.5e-14 52.3 11.0 7.9e-14 51.8 11.0 1.2 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF2569 PF10754.9 gi|126465567|ref|YP_001040676.1| - 0.0025 18.3 3.5 0.0034 17.8 3.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2569) SBF_like PF13593.6 gi|126465567|ref|YP_001040676.1| - 0.028 13.8 1.6 0.06 12.6 1.6 1.6 1 1 0 1 1 1 0 SBF-like CPA transporter family (DUF4137) Radical_SAM PF04055.21 gi|126465568|ref|YP_001040677.1| - 3.5e-26 92.5 0.0 6.7e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465568|ref|YP_001040677.1| - 3.2e-09 37.2 0.0 1.1e-08 35.4 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|126465568|ref|YP_001040677.1| - 1.1e-07 32.2 0.4 3.2e-07 30.8 0.4 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|126465568|ref|YP_001040677.1| - 1.7e-06 28.1 0.0 1.1e-05 25.5 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|126465568|ref|YP_001040677.1| - 0.00021 20.9 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|126465568|ref|YP_001040677.1| - 0.02 14.4 0.0 0.054 12.9 0.0 1.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel B12-binding PF02310.19 gi|126465569|ref|YP_001040678.1| - 2.4e-24 85.7 0.0 6.8e-23 81.0 0.0 2.4 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|126465569|ref|YP_001040678.1| - 4.3e-23 82.5 0.2 1.7e-22 80.5 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465569|ref|YP_001040678.1| - 7.9e-05 22.9 0.0 0.00023 21.5 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM_N PF08497.10 gi|126465569|ref|YP_001040678.1| - 0.0048 16.2 0.0 0.83 8.8 0.0 2.3 2 0 0 2 2 2 2 Radical SAM N-terminal Fer4_14 PF13394.6 gi|126465569|ref|YP_001040678.1| - 0.018 15.2 0.2 0.063 13.4 0.1 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Glycos_transf_2 PF00535.26 gi|126465569|ref|YP_001040678.1| - 0.024 14.5 0.1 0.21 11.4 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase family 2 Pneumo_ncap PF03246.13 gi|126465569|ref|YP_001040678.1| - 0.1 11.4 0.0 0.38 9.5 0.0 1.8 2 0 0 2 2 2 0 Pneumovirus nucleocapsid protein EamA PF00892.20 gi|126465570|ref|YP_001040679.1| - 9.9e-26 90.5 54.0 1.5e-15 57.5 21.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family RRM_DME PF15628.6 gi|126465570|ref|YP_001040679.1| - 0.031 14.4 0.1 0.064 13.4 0.1 1.5 1 0 0 1 1 1 0 RRM in Demeter ThiS PF02597.20 gi|126465571|ref|YP_001040680.1| - 3.4e-14 53.2 0.0 4.1e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family COMM_domain PF07258.14 gi|126465571|ref|YP_001040680.1| - 0.04 14.0 0.0 0.074 13.2 0.0 1.6 1 0 0 1 1 1 0 COMM domain USP7_C2 PF14533.6 gi|126465571|ref|YP_001040680.1| - 0.084 12.6 0.1 0.094 12.4 0.1 1.0 1 0 0 1 1 1 0 Ubiquitin-specific protease C-terminal TrkA_C PF02080.21 gi|126465571|ref|YP_001040680.1| - 0.11 12.3 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 TrkA-C domain Radical_SAM PF04055.21 gi|126465572|ref|YP_001040681.1| - 1e-20 74.8 0.1 2.3e-20 73.6 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|126465572|ref|YP_001040681.1| - 3.9e-12 46.5 0.1 3.9e-12 46.5 0.1 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|126465572|ref|YP_001040681.1| - 1.7e-07 31.4 0.0 3.7e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|126465572|ref|YP_001040681.1| - 9.9e-06 25.9 0.0 1.7e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AFOR_C PF01314.18 gi|126465573|ref|YP_001040682.1| - 7.9e-145 482.6 0.0 9.5e-145 482.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|126465573|ref|YP_001040682.1| - 3.3e-77 258.8 0.0 5.3e-77 258.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Peptidase_M78 PF06114.13 gi|126465574|ref|YP_001040683.1| - 0.072 13.0 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 IrrE N-terminal-like domain PHO4 PF01384.20 gi|126465575|ref|YP_001040684.1| - 4.6e-73 246.2 41.8 5.6e-73 245.9 41.8 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF2244 PF10003.9 gi|126465575|ref|YP_001040684.1| - 0.077 12.7 1.2 0.46 10.1 1.2 2.4 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) HEPN PF05168.14 gi|126465576|ref|YP_001040685.1| - 4.7e-25 88.0 2.2 5.2e-25 87.9 2.2 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|126465577|ref|YP_001040686.1| - 9.2e-12 45.1 0.6 1.2e-11 44.7 0.6 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126465577|ref|YP_001040686.1| - 2.2e-09 37.3 1.4 2.8e-09 36.9 1.0 1.5 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|126465577|ref|YP_001040686.1| - 1e-05 25.7 0.0 1.2e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm HTH_48 PF17906.1 gi|126465577|ref|YP_001040686.1| - 0.028 14.5 0.0 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain in Mos1 transposase P22_AR_C PF10548.9 gi|126465577|ref|YP_001040686.1| - 0.048 13.8 0.1 0.084 13.1 0.1 1.5 1 0 0 1 1 1 0 P22AR C-terminal domain DUF2179 PF10035.9 gi|126465577|ref|YP_001040686.1| - 0.061 13.1 2.0 0.067 12.9 0.1 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) ABM PF03992.16 gi|126465578|ref|YP_001040687.1| - 0.0023 18.0 0.0 0.0033 17.5 0.0 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase CcdA PF07362.12 gi|126465578|ref|YP_001040687.1| - 0.0029 18.0 0.2 0.0046 17.3 0.1 1.5 1 1 1 2 2 2 1 Post-segregation antitoxin CcdA NBD94 PF16830.5 gi|126465578|ref|YP_001040687.1| - 0.036 14.4 0.0 0.044 14.2 0.0 1.1 1 0 0 1 1 1 0 Nucleotide-Binding Domain 94 of RH PIN PF01850.21 gi|126465579|ref|YP_001040688.1| - 6.7e-11 42.8 3.8 8.4e-11 42.4 3.8 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|126465579|ref|YP_001040688.1| - 0.0057 17.4 0.1 0.014 16.1 0.1 1.8 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|126465579|ref|YP_001040688.1| - 0.035 14.3 0.2 0.046 14.0 0.2 1.1 1 0 0 1 1 1 0 PIN domain GATase_4 PF13230.6 gi|126465580|ref|YP_001040689.1| - 2.2e-35 121.9 0.0 2.7e-35 121.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|126465580|ref|YP_001040689.1| - 3.5e-12 46.7 0.0 8.6e-12 45.4 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|126465580|ref|YP_001040689.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.6 2 0 0 2 2 2 0 Glutamine amidotransferase domain adh_short_C2 PF13561.6 gi|126465581|ref|YP_001040690.1| - 2e-64 217.3 0.0 2.7e-64 216.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|126465581|ref|YP_001040690.1| - 9.4e-57 191.6 0.1 1.1e-56 191.4 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|126465581|ref|YP_001040690.1| - 1.2e-14 54.6 0.0 3.7e-14 53.0 0.0 1.6 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 gi|126465581|ref|YP_001040690.1| - 0.0072 15.8 0.1 0.06 12.8 0.0 2.1 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Ub-RnfH PF03658.14 gi|126465581|ref|YP_001040690.1| - 0.057 13.8 0.0 0.15 12.4 0.0 1.6 2 0 0 2 2 2 0 RnfH family Ubiquitin NmrA PF05368.13 gi|126465581|ref|YP_001040690.1| - 0.085 12.4 0.2 0.23 11.0 0.1 1.8 2 0 0 2 2 2 0 NmrA-like family DUF1776 PF08643.10 gi|126465581|ref|YP_001040690.1| - 0.11 11.9 0.0 0.41 10.0 0.0 1.8 1 1 0 1 1 1 0 Fungal family of unknown function (DUF1776) LDcluster4 PF18306.1 gi|126465581|ref|YP_001040690.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 SLOG cluster4 family HEPN PF05168.14 gi|126465583|ref|YP_001040692.1| - 1.9e-24 86.1 0.2 2.5e-24 85.7 0.2 1.1 1 0 0 1 1 1 1 HEPN domain PALP PF00291.25 gi|126465584|ref|YP_001040693.1| - 6.6e-50 170.2 0.0 2.1e-49 168.5 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme malic PF00390.19 gi|126465584|ref|YP_001040693.1| - 0.082 12.7 0.4 0.23 11.3 0.3 1.8 2 0 0 2 2 2 0 Malic enzyme, N-terminal domain HTH_3 PF01381.22 gi|126465585|ref|YP_001040694.1| - 1.3e-05 25.2 0.1 2.5e-05 24.2 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|126465585|ref|YP_001040694.1| - 0.0052 16.8 0.0 0.035 14.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|126465585|ref|YP_001040694.1| - 0.016 15.0 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_31 PF13560.6 gi|126465585|ref|YP_001040694.1| - 0.23 11.8 0.0 0.44 10.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_5 PF00266.19 gi|126465586|ref|YP_001040695.1| - 5.4e-130 433.6 0.0 6.2e-130 433.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|126465586|ref|YP_001040695.1| - 4.9e-10 39.2 0.0 8.1e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|126465586|ref|YP_001040695.1| - 7.8e-08 31.9 0.0 1.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|126465586|ref|YP_001040695.1| - 7.2e-07 28.1 0.1 1.2e-06 27.4 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|126465586|ref|YP_001040695.1| - 0.00039 19.8 0.0 0.00051 19.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|126465586|ref|YP_001040695.1| - 0.00041 19.5 0.6 0.0028 16.7 0.6 1.9 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase DNA_ligase_OB PF03120.16 gi|126465586|ref|YP_001040695.1| - 0.035 14.0 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain Peptidase_C15 PF01470.17 gi|126465587|ref|YP_001040696.1| - 1.1e-07 32.3 0.0 1.4e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Pyroglutamyl peptidase UPF0180 PF03698.13 gi|126465587|ref|YP_001040696.1| - 0.12 12.5 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) GDPD PF03009.17 gi|126465588|ref|YP_001040697.1| - 1.7e-29 103.4 0.1 2.2e-28 99.7 0.1 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|126465588|ref|YP_001040697.1| - 0.001 19.4 0.0 0.008 16.6 0.1 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|126465588|ref|YP_001040697.1| - 0.1 12.2 0.0 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain Ribosomal_L40e PF01020.17 gi|126465589|ref|YP_001040698.1| - 2.8e-08 33.5 4.9 3.1e-08 33.4 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.18 gi|126465589|ref|YP_001040698.1| - 8.3e-05 21.8 4.8 0.00012 21.3 4.8 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF35_N PF12172.8 gi|126465589|ref|YP_001040698.1| - 0.00088 19.1 2.4 0.0011 18.8 2.4 1.1 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|126465589|ref|YP_001040698.1| - 0.001 18.7 3.9 0.0015 18.2 3.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|126465589|ref|YP_001040698.1| - 0.0014 18.6 0.6 0.0015 18.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|126465589|ref|YP_001040698.1| - 0.0028 17.7 0.2 0.0028 17.6 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|126465589|ref|YP_001040698.1| - 0.0052 16.5 0.3 0.0058 16.3 0.3 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-ribbon_3 PF13248.6 gi|126465589|ref|YP_001040698.1| - 0.019 14.3 3.8 0.026 13.9 3.8 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|126465589|ref|YP_001040698.1| - 0.2 11.8 8.1 0.33 11.1 1.7 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain YhfH PF14149.6 gi|126465589|ref|YP_001040698.1| - 0.28 11.2 0.1 0.28 11.2 0.1 2.2 3 0 0 3 3 3 0 YhfH-like protein DHHC PF01529.20 gi|126465589|ref|YP_001040698.1| - 0.34 11.0 2.1 0.38 10.9 2.1 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase RNA_POL_M_15KD PF02150.16 gi|126465589|ref|YP_001040698.1| - 0.64 10.0 5.0 2 8.3 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit SSF PF00474.17 gi|126465590|ref|YP_001040699.1| - 3.3e-18 65.7 17.0 3.3e-18 65.7 17.0 1.3 1 1 0 1 1 1 1 Sodium:solute symporter family CRT10 PF08728.10 gi|126465590|ref|YP_001040699.1| - 0.051 11.8 0.1 0.069 11.3 0.1 1.1 1 0 0 1 1 1 0 CRT10 SSF PF00474.17 gi|126465591|ref|YP_001040700.1| - 0.0022 16.9 0.6 0.0033 16.4 0.6 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family PalH PF08733.10 gi|126465592|ref|YP_001040701.1| - 0.052 12.6 1.6 0.056 12.5 1.6 1.1 1 0 0 1 1 1 0 PalH/RIM21 DUF2204 PF09970.9 gi|126465593|ref|YP_001040702.1| - 5e-67 225.0 1.2 5.6e-67 224.9 1.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_8 PF12281.8 gi|126465593|ref|YP_001040702.1| - 0.15 12.0 0.0 2.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyltransferase Radical_SAM PF04055.21 gi|126465594|ref|YP_001040703.1| - 1.9e-16 60.9 0.1 4.9e-16 59.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.12 gi|126465594|ref|YP_001040703.1| - 0.012 15.1 5.4 0.22 11.1 0.4 3.8 3 1 1 4 4 4 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|126465594|ref|YP_001040703.1| - 0.033 13.6 7.2 0.45 10.0 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DiS_P_DiS PF06750.13 gi|126465594|ref|YP_001040703.1| - 0.047 13.8 0.3 0.047 13.8 0.3 2.0 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain DZR PF12773.7 gi|126465594|ref|YP_001040703.1| - 0.055 13.5 0.1 0.055 13.5 0.1 2.9 3 1 0 3 3 3 0 Double zinc ribbon Fer4_14 PF13394.6 gi|126465594|ref|YP_001040703.1| - 0.13 12.4 0.0 0.13 12.4 0.0 1.7 2 0 0 2 2 1 0 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|126465594|ref|YP_001040703.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.19 gi|126465594|ref|YP_001040703.1| - 0.28 11.0 4.6 4.3 7.2 0.2 3.4 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|126465594|ref|YP_001040703.1| - 1 9.2 10.7 2.1 8.2 0.4 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|126465594|ref|YP_001040703.1| - 1 9.0 5.1 10 5.8 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-ISL3 PF14690.6 gi|126465594|ref|YP_001040703.1| - 1.1 9.9 14.5 0.63 10.8 0.3 3.9 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.9 gi|126465594|ref|YP_001040703.1| - 3.4 8.0 10.8 2.9 8.2 0.1 3.7 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|126465594|ref|YP_001040703.1| - 3.5 7.4 12.5 12 5.7 0.6 3.5 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|126465594|ref|YP_001040703.1| - 9 6.5 10.2 1.3 9.2 1.9 3.3 3 1 0 3 3 3 0 Zinc ribbon domain Bmp PF02608.14 gi|126465595|ref|YP_001040704.1| - 5.6e-48 163.5 0.0 7.9e-48 163.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like MLANA PF14991.6 gi|126465595|ref|YP_001040704.1| - 0.055 13.7 0.1 0.12 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein melan-A DUF3810 PF12725.7 gi|126465595|ref|YP_001040704.1| - 0.089 12.1 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) SpoIIIAH PF12685.7 gi|126465595|ref|YP_001040704.1| - 0.099 12.5 2.1 0.17 11.7 2.1 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein 4HB_MCP_1 PF12729.7 gi|126465595|ref|YP_001040704.1| - 0.13 11.8 0.5 0.25 10.9 0.5 1.5 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF2802 PF10975.8 gi|126465595|ref|YP_001040704.1| - 0.18 12.0 0.1 0.64 10.2 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) DUF945 PF06097.11 gi|126465595|ref|YP_001040704.1| - 0.23 10.6 4.0 0.29 10.2 2.6 1.8 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF945) DUF3439 PF11921.8 gi|126465595|ref|YP_001040704.1| - 0.44 10.5 10.8 0.9 9.5 10.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) ABC_tran PF00005.27 gi|126465596|ref|YP_001040705.1| - 6.4e-48 162.8 0.0 1.3e-30 106.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|126465596|ref|YP_001040705.1| - 2e-08 34.4 1.4 0.0027 17.6 0.1 2.7 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126465596|ref|YP_001040705.1| - 0.0046 17.5 0.1 0.0078 16.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126465596|ref|YP_001040705.1| - 0.047 13.4 0.0 0.21 11.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|126465596|ref|YP_001040705.1| - 0.048 13.4 0.1 0.15 11.8 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126465596|ref|YP_001040705.1| - 0.1 12.5 0.2 0.55 10.1 0.0 2.2 2 1 1 3 3 3 0 RsgA GTPase DUF3584 PF12128.8 gi|126465596|ref|YP_001040705.1| - 0.22 9.0 0.1 0.31 8.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA PF00004.29 gi|126465596|ref|YP_001040705.1| - 0.33 11.4 3.4 7.1 7.1 3.4 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BPD_transp_2 PF02653.16 gi|126465597|ref|YP_001040706.1| - 2.9e-35 121.8 34.9 2.9e-35 121.8 34.9 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|126465598|ref|YP_001040707.1| - 1e-39 136.3 34.3 1.4e-39 135.9 34.4 1.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component ADH_N PF08240.12 gi|126465599|ref|YP_001040708.1| - 4.5e-30 103.7 0.7 7e-30 103.1 0.7 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|126465599|ref|YP_001040708.1| - 3.1e-16 59.5 0.0 5.6e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|126465599|ref|YP_001040708.1| - 1.6e-13 50.7 0.0 2.4e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_assoc PF13823.6 gi|126465599|ref|YP_001040708.1| - 2.2e-05 24.3 0.0 5.9e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.6 gi|126465599|ref|YP_001040708.1| - 0.019 16.0 0.0 0.077 14.1 0.0 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase PNP_UDP_1 PF01048.20 gi|126465600|ref|YP_001040709.1| - 1.3e-31 109.7 0.0 1.5e-31 109.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MFS_1 PF07690.16 gi|126465601|ref|YP_001040710.1| - 2.1e-18 66.4 43.1 3.2e-18 65.8 43.1 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Pox_A14 PF05767.12 gi|126465601|ref|YP_001040710.1| - 0.012 15.7 1.7 0.012 15.7 1.7 3.4 4 1 0 4 4 4 0 Poxvirus virion envelope protein A14 Sugar_tr PF00083.24 gi|126465601|ref|YP_001040710.1| - 1.7 7.4 40.0 0.061 12.2 17.5 3.2 1 1 1 3 3 3 0 Sugar (and other) transporter Peptidase_M20 PF01546.28 gi|126465602|ref|YP_001040711.1| - 3e-24 85.9 0.0 4.1e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|126465602|ref|YP_001040711.1| - 3.8e-17 62.2 0.0 9.4e-17 60.9 0.0 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain EamA PF00892.20 gi|126465603|ref|YP_001040712.1| - 4.1e-40 137.1 34.1 3.9e-20 72.4 11.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|126465603|ref|YP_001040712.1| - 1e-05 25.1 6.4 0.0067 15.8 1.5 2.3 1 1 1 2 2 2 2 Triose-phosphate Transporter family DUF2070 PF09843.9 gi|126465603|ref|YP_001040712.1| - 8 4.6 17.6 0.087 11.1 9.1 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) GDPD PF03009.17 gi|126465604|ref|YP_001040713.1| - 1.8e-07 31.1 0.4 9.4e-07 28.8 0.2 2.0 2 1 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family Stn1_C PF12659.7 gi|126465604|ref|YP_001040713.1| - 0.088 12.8 0.5 0.16 11.9 0.5 1.4 1 0 0 1 1 1 0 Telomere capping C-terminal wHTH DUF4065 PF13274.6 gi|126465605|ref|YP_001040714.1| - 0.005 17.7 0.4 0.02 15.8 0.3 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4065) CbiA PF01656.23 gi|126465606|ref|YP_001040715.1| - 4.7e-21 75.2 0.0 6.2e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|126465606|ref|YP_001040715.1| - 7.1e-19 68.2 0.0 4.7e-11 42.6 0.0 2.8 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|126465606|ref|YP_001040715.1| - 2.2e-12 46.3 14.1 5.8e-08 32.2 4.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126465606|ref|YP_001040715.1| - 3.7e-10 40.2 23.1 6.3e-07 29.9 12.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465606|ref|YP_001040715.1| - 1.4e-09 37.6 13.1 4.1e-06 26.6 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126465606|ref|YP_001040715.1| - 6.6e-09 35.8 11.9 8.3e-09 35.5 10.9 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126465606|ref|YP_001040715.1| - 8.3e-09 35.0 11.0 0.0001 22.2 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465606|ref|YP_001040715.1| - 1.8e-08 34.4 11.3 9.5e-07 28.8 12.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126465606|ref|YP_001040715.1| - 1.3e-07 31.6 11.0 2.2e-07 30.9 11.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465606|ref|YP_001040715.1| - 1.8e-07 32.0 6.4 0.0025 18.7 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain AAA_31 PF13614.6 gi|126465606|ref|YP_001040715.1| - 2e-07 31.1 0.0 3.9e-06 26.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|126465606|ref|YP_001040715.1| - 2.4e-07 30.3 0.1 1.5e-06 27.6 0.1 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|126465606|ref|YP_001040715.1| - 1.1e-05 25.1 0.0 0.064 12.7 0.0 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|126465606|ref|YP_001040715.1| - 3e-05 23.6 0.0 0.043 13.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_3 PF12798.7 gi|126465606|ref|YP_001040715.1| - 0.00021 22.0 17.0 0.012 16.5 5.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126465606|ref|YP_001040715.1| - 0.00089 19.6 3.9 0.00089 19.6 3.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain MipZ PF09140.11 gi|126465606|ref|YP_001040715.1| - 0.005 16.2 0.1 0.0074 15.6 0.1 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_8 PF13183.6 gi|126465606|ref|YP_001040715.1| - 0.0072 16.7 15.7 2.5 8.6 15.7 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|126465606|ref|YP_001040715.1| - 0.024 14.2 0.1 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain Fer4_17 PF13534.6 gi|126465606|ref|YP_001040715.1| - 0.036 14.6 12.6 0.13 12.8 3.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|126465606|ref|YP_001040715.1| - 0.09 12.7 0.8 1.7 8.5 0.4 2.2 2 0 0 2 2 2 0 RsgA GTPase APS_kinase PF01583.20 gi|126465606|ref|YP_001040715.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MeaB PF03308.16 gi|126465606|ref|YP_001040715.1| - 0.34 9.9 1.2 0.44 9.5 0.1 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_13 PF13370.6 gi|126465606|ref|YP_001040715.1| - 1.2 9.8 10.6 0.17 12.5 2.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I AAA_29 PF13555.6 gi|126465606|ref|YP_001040715.1| - 2.5 7.9 3.8 0.91 9.3 0.5 2.0 3 0 0 3 3 2 0 P-loop containing region of AAA domain Fer4_22 PF17179.4 gi|126465606|ref|YP_001040715.1| - 2.6 8.9 12.3 11 6.9 3.3 2.3 1 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126465606|ref|YP_001040715.1| - 3.3 8.0 11.4 0.86 9.8 2.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Nitro_FeMo-Co PF02579.17 gi|126465607|ref|YP_001040716.1| - 4.8e-20 71.7 0.1 5.5e-20 71.5 0.1 1.0 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Semialdhyde_dhC PF02774.18 gi|126465607|ref|YP_001040716.1| - 0.043 13.9 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain Glyco_hydro_4 PF02056.16 gi|126465608|ref|YP_001040717.1| - 5.4e-48 163.0 0.0 7.8e-48 162.4 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|126465608|ref|YP_001040717.1| - 3.4e-42 144.9 0.0 2.2e-41 142.2 0.0 1.9 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|126465608|ref|YP_001040717.1| - 0.0011 19.1 0.2 0.79 9.8 0.0 2.3 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain HupE_UreJ_2 PF13795.6 gi|126465608|ref|YP_001040717.1| - 0.006 16.2 0.0 0.0096 15.6 0.0 1.3 1 0 0 1 1 1 1 HupE / UreJ protein OTCace PF00185.24 gi|126465608|ref|YP_001040717.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Acetyltransf_1 PF00583.25 gi|126465609|ref|YP_001040718.1| - 4.1e-07 30.2 1.2 6.1e-05 23.2 0.2 2.4 2 1 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126465609|ref|YP_001040718.1| - 8.3e-05 22.9 0.3 0.00087 19.7 0.1 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|126465609|ref|YP_001040718.1| - 0.00083 19.4 0.0 0.0046 17.1 0.0 2.1 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|126465609|ref|YP_001040718.1| - 0.0069 16.5 0.0 0.15 12.1 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126465609|ref|YP_001040718.1| - 0.0089 16.0 0.0 0.29 11.1 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain UPF0113 PF03657.13 gi|126465609|ref|YP_001040718.1| - 0.015 15.5 0.1 11 6.4 0.0 2.8 2 1 0 2 2 2 0 UPF0113 PUA domain AAA_5 PF07728.14 gi|126465609|ref|YP_001040718.1| - 0.14 12.1 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NAGidase PF07555.13 gi|126465610|ref|YP_001040719.1| - 2.4e-90 302.9 0.0 3e-90 302.5 0.0 1.1 1 0 0 1 1 1 1 beta-N-acetylglucosaminidase PRD PF00874.20 gi|126465610|ref|YP_001040719.1| - 0.77 10.1 3.2 0.33 11.3 0.4 1.8 2 0 0 2 2 2 0 PRD domain PIG-L PF02585.17 gi|126465611|ref|YP_001040720.1| - 5.1e-29 101.5 0.0 8.2e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase ETC_C1_NDUFA5 PF04716.14 gi|126465611|ref|YP_001040720.1| - 0.044 13.6 1.3 0.065 13.0 0.1 1.9 2 0 0 2 2 2 0 ETC complex I subunit conserved region MFS_2 PF13347.6 gi|126465612|ref|YP_001040721.1| - 3.5e-58 197.2 35.9 4.1e-58 196.9 35.9 1.1 1 0 0 1 1 1 1 MFS/sugar transport protein MFS_1 PF07690.16 gi|126465612|ref|YP_001040721.1| - 1.1e-16 60.7 43.1 1e-08 34.5 23.5 2.9 1 1 2 3 3 3 2 Major Facilitator Superfamily PIRT PF15099.6 gi|126465612|ref|YP_001040721.1| - 0.61 9.7 7.1 0.15 11.6 1.5 2.6 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family DUF2371 PF10177.9 gi|126465613|ref|YP_001040722.1| - 0.16 12.2 0.2 0.29 11.3 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Mucin PF01456.17 gi|126465613|ref|YP_001040722.1| - 0.38 10.7 31.5 2 8.4 7.9 2.7 3 0 0 3 3 3 0 Mucin-like glycoprotein DUF3439 PF11921.8 gi|126465613|ref|YP_001040722.1| - 6.7 6.7 24.4 0.45 10.5 8.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3439) Ribosomal_S7e PF01251.18 gi|126465614|ref|YP_001040723.1| - 6.5e-05 22.8 0.6 0.008 15.9 0.0 2.2 1 1 1 2 2 2 2 Ribosomal protein S7e GvpK PF05121.12 gi|126465614|ref|YP_001040723.1| - 0.035 14.1 0.0 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 Gas vesicle protein K DHHA1 PF02272.19 gi|126465614|ref|YP_001040723.1| - 0.037 14.4 1.5 0.055 13.9 1.5 1.2 1 0 0 1 1 1 0 DHHA1 domain TruD PF01142.18 gi|126465615|ref|YP_001040724.1| - 2.6e-38 131.9 0.7 3.4e-32 111.8 1.1 3.0 2 1 0 2 2 2 2 tRNA pseudouridine synthase D (TruD) DUF3884 PF13024.6 gi|126465615|ref|YP_001040724.1| - 0.064 12.8 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) PTH2 PF01981.16 gi|126465616|ref|YP_001040725.1| - 3.7e-40 136.9 0.0 4.1e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.20 gi|126465616|ref|YP_001040725.1| - 0.08 12.9 0.6 0.56 10.1 0.0 1.9 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1610 PF07754.11 gi|126465617|ref|YP_001040726.1| - 1.3e-10 41.0 12.4 7.9e-09 35.3 4.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|126465617|ref|YP_001040726.1| - 0.0001 22.7 4.3 0.00013 22.4 4.3 1.2 1 0 0 1 1 1 1 CHY zinc finger DZR PF12773.7 gi|126465617|ref|YP_001040726.1| - 0.00046 20.2 11.5 0.0027 17.7 11.6 2.1 1 1 1 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|126465617|ref|YP_001040726.1| - 0.015 15.2 9.0 0.015 15.2 0.5 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF1272 PF06906.11 gi|126465617|ref|YP_001040726.1| - 0.017 15.2 10.7 3 8.0 10.7 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) TF_Zn_Ribbon PF08271.12 gi|126465617|ref|YP_001040726.1| - 0.022 14.3 1.8 0.022 14.3 1.8 3.1 3 1 0 3 3 3 0 TFIIB zinc-binding zf-UDP PF14569.6 gi|126465617|ref|YP_001040726.1| - 0.024 14.7 4.5 0.03 14.4 4.5 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger zf_UBZ PF18439.1 gi|126465617|ref|YP_001040726.1| - 0.045 13.3 16.2 0.99 9.1 0.1 4.0 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|126465617|ref|YP_001040726.1| - 0.046 13.8 7.7 0.12 12.4 0.2 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-piccolo PF05715.13 gi|126465617|ref|YP_001040726.1| - 0.046 13.9 8.8 0.37 11.0 0.7 2.2 1 1 1 2 2 2 0 Piccolo Zn-finger zf-RING_9 PF13901.6 gi|126465617|ref|YP_001040726.1| - 0.081 12.9 5.8 0.099 12.6 5.8 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon zinc_ribbon_4 PF13717.6 gi|126465617|ref|YP_001040726.1| - 0.2 11.6 15.6 1.8 8.5 2.2 4.1 3 1 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|126465617|ref|YP_001040726.1| - 0.23 11.2 15.3 1.7 8.4 0.4 3.7 2 2 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein PolC_DP2 PF03833.13 gi|126465617|ref|YP_001040726.1| - 0.29 8.9 2.9 0.27 9.0 2.9 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.11 gi|126465617|ref|YP_001040726.1| - 0.32 11.2 9.1 0.13 12.4 3.5 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-MYND PF01753.18 gi|126465617|ref|YP_001040726.1| - 0.34 11.0 7.8 1.4 9.1 0.1 2.4 1 1 0 2 2 2 0 MYND finger FYVE_2 PF02318.16 gi|126465617|ref|YP_001040726.1| - 0.52 10.5 4.6 0.96 9.7 4.6 1.5 1 1 0 1 1 1 0 FYVE-type zinc finger Rubredoxin_2 PF18073.1 gi|126465617|ref|YP_001040726.1| - 0.54 10.0 0.3 0.54 10.0 0.3 3.9 4 0 0 4 4 4 0 Rubredoxin metal binding domain zinc_ribbon_15 PF17032.5 gi|126465617|ref|YP_001040726.1| - 0.62 10.9 9.2 21 5.9 9.2 2.4 1 1 0 1 1 1 0 zinc-ribbon family A2L_zn_ribbon PF08792.10 gi|126465617|ref|YP_001040726.1| - 0.68 9.7 12.1 1.6 8.5 0.2 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|126465617|ref|YP_001040726.1| - 0.8 9.2 18.3 1.1 8.8 0.7 3.5 3 1 0 3 3 3 0 zinc-ribbon domain DUF2321 PF10083.9 gi|126465617|ref|YP_001040726.1| - 0.87 9.2 8.3 0.12 12.0 3.8 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Ribosomal_L32p PF01783.23 gi|126465617|ref|YP_001040726.1| - 0.9 9.9 13.7 0.9 9.8 2.3 2.9 1 1 1 2 2 2 0 Ribosomal L32p protein family zinc_ribbon_2 PF13240.6 gi|126465617|ref|YP_001040726.1| - 1.2 9.0 21.7 2.2 8.1 3.9 4.0 2 2 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.16 gi|126465617|ref|YP_001040726.1| - 1.3 9.3 11.9 3.6 7.8 2.6 2.7 2 1 1 3 3 3 0 AN1-like Zinc finger Spt4 PF06093.13 gi|126465617|ref|YP_001040726.1| - 1.5 9.0 9.7 0.54 10.4 0.5 2.3 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-Mss51 PF13824.6 gi|126465617|ref|YP_001040726.1| - 2 8.5 11.1 6 7.0 1.9 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF35_N PF12172.8 gi|126465617|ref|YP_001040726.1| - 2.3 8.2 18.1 0.28 11.1 4.5 3.7 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_9 PF14369.6 gi|126465617|ref|YP_001040726.1| - 2.4 8.5 13.5 0.18 12.1 2.4 2.6 1 1 0 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|126465617|ref|YP_001040726.1| - 2.7 8.2 16.4 20 5.4 9.9 3.6 1 1 2 3 3 3 0 Zinc ribbon domain zf-ACC PF17848.1 gi|126465617|ref|YP_001040726.1| - 3.5 7.8 0.0 3.5 7.8 0.0 3.9 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|126465617|ref|YP_001040726.1| - 3.8 7.5 16.3 6.3 6.8 0.3 3.8 2 1 3 5 5 5 0 Nudix N-terminal zf-HIT PF04438.16 gi|126465617|ref|YP_001040726.1| - 5.7 6.9 14.4 10 6.1 6.2 3.3 3 1 0 3 3 3 0 HIT zinc finger Nop10p PF04135.12 gi|126465617|ref|YP_001040726.1| - 6.3 6.9 9.9 0.31 11.1 1.7 2.4 2 1 1 3 3 2 0 Nucleolar RNA-binding protein, Nop10p family TackOD1 PF18551.1 gi|126465617|ref|YP_001040726.1| - 8.8 6.0 11.1 4.7 6.8 3.2 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-B_box PF00643.24 gi|126465617|ref|YP_001040726.1| - 9.2 6.5 15.1 1.1 9.5 5.2 2.6 1 1 1 2 2 2 0 B-box zinc finger EF1_GNE PF00736.19 gi|126465618|ref|YP_001040727.1| - 5.5e-21 74.6 0.1 6.1e-21 74.4 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain MazG-like PF12643.7 gi|126465618|ref|YP_001040727.1| - 0.053 13.8 0.1 0.074 13.3 0.1 1.2 1 0 0 1 1 1 0 MazG-like family AAA PF00004.29 gi|126465619|ref|YP_001040728.1| - 1.3e-99 329.7 0.0 7e-50 168.9 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126465619|ref|YP_001040728.1| - 3.7e-38 129.1 1.8 2.2e-18 65.8 0.2 3.0 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|126465619|ref|YP_001040728.1| - 5.7e-27 93.7 0.1 5.2e-26 90.6 0.5 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|126465619|ref|YP_001040728.1| - 6.3e-16 58.5 0.0 2e-07 30.9 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|126465619|ref|YP_001040728.1| - 1.1e-14 55.2 0.2 2.4e-06 28.0 0.0 3.9 2 2 1 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|126465619|ref|YP_001040728.1| - 8.5e-14 51.1 0.6 2.2e-13 49.8 0.2 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|126465619|ref|YP_001040728.1| - 3.4e-12 46.8 0.0 3.4e-06 27.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|126465619|ref|YP_001040728.1| - 1e-11 45.3 0.8 0.00016 22.0 0.1 4.2 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|126465619|ref|YP_001040728.1| - 4.7e-11 42.8 2.0 0.00024 21.1 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|126465619|ref|YP_001040728.1| - 8.4e-11 41.7 0.0 0.00013 21.4 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|126465619|ref|YP_001040728.1| - 3.1e-10 40.4 0.0 0.00048 20.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|126465619|ref|YP_001040728.1| - 5e-09 36.3 0.0 0.00082 19.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|126465619|ref|YP_001040728.1| - 8.4e-09 36.1 0.0 0.0064 17.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|126465619|ref|YP_001040728.1| - 3.7e-08 33.3 0.0 0.0097 15.7 0.0 2.7 2 1 1 3 3 3 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|126465619|ref|YP_001040728.1| - 3.7e-07 30.0 0.1 0.021 14.6 0.0 2.6 2 1 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|126465619|ref|YP_001040728.1| - 3.8e-07 30.0 0.1 0.03 14.0 0.0 3.7 3 1 0 3 3 3 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|126465619|ref|YP_001040728.1| - 5.9e-07 29.8 0.0 0.043 14.2 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|126465619|ref|YP_001040728.1| - 6.3e-07 29.0 0.6 0.037 13.4 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|126465619|ref|YP_001040728.1| - 8.6e-07 29.3 0.0 0.06 13.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|126465619|ref|YP_001040728.1| - 2.7e-06 26.9 0.5 0.16 11.3 0.0 3.6 2 1 0 3 3 3 2 KaiC TsaE PF02367.17 gi|126465619|ref|YP_001040728.1| - 7.9e-06 25.9 0.0 0.21 11.6 0.1 3.0 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps4_C PF09336.10 gi|126465619|ref|YP_001040728.1| - 8.5e-06 25.7 0.0 0.0044 17.0 0.0 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.13 gi|126465619|ref|YP_001040728.1| - 1.3e-05 24.5 0.0 0.16 11.1 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|126465619|ref|YP_001040728.1| - 2.6e-05 24.2 0.4 0.077 12.9 0.1 3.3 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|126465619|ref|YP_001040728.1| - 3.1e-05 23.6 0.0 0.2 11.2 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|126465619|ref|YP_001040728.1| - 3.5e-05 23.7 0.0 0.34 10.8 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|126465619|ref|YP_001040728.1| - 5.2e-05 22.5 0.2 0.23 10.5 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|126465619|ref|YP_001040728.1| - 5.5e-05 22.7 1.2 0.48 9.8 0.1 3.2 3 0 0 3 3 3 2 PhoH-like protein NACHT PF05729.12 gi|126465619|ref|YP_001040728.1| - 0.00011 22.2 0.2 1.2 9.0 0.1 3.2 3 0 0 3 3 3 2 NACHT domain AAA_25 PF13481.6 gi|126465619|ref|YP_001040728.1| - 0.00021 20.9 3.7 0.89 9.1 0.3 3.6 3 1 0 3 3 3 2 AAA domain Zeta_toxin PF06414.12 gi|126465619|ref|YP_001040728.1| - 0.00021 20.6 0.1 0.58 9.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin ABC_tran PF00005.27 gi|126465619|ref|YP_001040728.1| - 0.00031 21.3 0.0 1.3 9.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter DUF2075 PF09848.9 gi|126465619|ref|YP_001040728.1| - 0.00075 18.8 0.0 0.61 9.3 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|126465619|ref|YP_001040728.1| - 0.00077 19.4 0.0 0.35 10.7 0.0 3.0 3 1 0 3 3 3 1 Bacterial dnaA protein AAA_30 PF13604.6 gi|126465619|ref|YP_001040728.1| - 0.00091 19.0 0.2 1.3 8.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|126465619|ref|YP_001040728.1| - 0.0011 18.2 0.0 1.2 8.2 0.0 2.6 3 0 0 3 3 2 2 NB-ARC domain AAA_11 PF13086.6 gi|126465619|ref|YP_001040728.1| - 0.0016 18.2 0.0 2.1 8.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|126465619|ref|YP_001040728.1| - 0.0023 18.3 1.7 2.3 8.5 0.1 3.0 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.6 gi|126465619|ref|YP_001040728.1| - 0.0036 17.7 0.0 4.3 7.8 0.0 3.0 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|126465619|ref|YP_001040728.1| - 0.0054 16.8 0.0 3 7.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AFG1_ATPase PF03969.16 gi|126465619|ref|YP_001040728.1| - 0.0075 15.2 0.1 4.5 6.1 0.0 2.7 3 0 0 3 3 3 0 AFG1-like ATPase Rad17 PF03215.15 gi|126465619|ref|YP_001040728.1| - 0.013 15.4 0.0 7.9 6.3 0.0 3.1 2 1 1 3 3 3 0 Rad17 P-loop domain Guanylate_kin PF00625.21 gi|126465619|ref|YP_001040728.1| - 0.023 14.4 0.3 60 3.3 0.0 4.0 3 2 2 5 5 3 0 Guanylate kinase IPT PF01745.16 gi|126465619|ref|YP_001040728.1| - 0.024 14.1 0.8 2.6 7.4 0.0 2.7 3 0 0 3 3 2 0 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|126465619|ref|YP_001040728.1| - 0.027 14.2 0.4 8.3 6.1 0.0 3.0 3 0 0 3 3 2 0 Cytidylate kinase ADSL_C PF10397.9 gi|126465619|ref|YP_001040728.1| - 0.031 14.8 0.6 0.22 12.1 0.1 2.6 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus NTPase_1 PF03266.15 gi|126465619|ref|YP_001040728.1| - 0.034 14.1 4.0 11 5.9 0.0 4.3 3 2 2 5 5 5 0 NTPase Zot PF05707.12 gi|126465619|ref|YP_001040728.1| - 0.047 13.3 0.1 1.5 8.4 0.0 3.0 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) cobW PF02492.19 gi|126465619|ref|YP_001040728.1| - 0.051 13.2 0.0 9 5.8 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|126465619|ref|YP_001040728.1| - 0.063 12.3 0.0 5.8 5.9 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein SKI PF01202.22 gi|126465619|ref|YP_001040728.1| - 0.071 13.2 0.0 15 5.6 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|126465619|ref|YP_001040728.1| - 0.13 12.0 0.0 23 4.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|126465619|ref|YP_001040728.1| - 0.14 11.9 0.0 8.7 6.1 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|126465619|ref|YP_001040728.1| - 0.2 11.4 0.0 9 6.0 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PadR PF03551.14 gi|126465620|ref|YP_001040729.1| - 0.0099 15.8 0.5 0.012 15.5 0.5 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family XPG_I PF00867.18 gi|126465621|ref|YP_001040730.1| - 1.4e-28 99.1 0.0 2.5e-28 98.2 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|126465621|ref|YP_001040730.1| - 8e-23 80.8 0.0 1.4e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|126465621|ref|YP_001040730.1| - 7e-07 29.8 0.8 3.8e-06 27.4 0.0 2.4 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|126465621|ref|YP_001040730.1| - 0.00077 20.0 0.3 0.0051 17.4 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc_N PF02739.16 gi|126465621|ref|YP_001040730.1| - 0.0013 18.7 0.0 0.0065 16.4 0.0 2.1 2 1 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain HHH_2 PF12826.7 gi|126465621|ref|YP_001040730.1| - 0.17 12.0 0.0 0.5 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif PCMT PF01135.19 gi|126465622|ref|YP_001040731.1| - 4.3e-70 235.7 0.0 5.1e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|126465622|ref|YP_001040731.1| - 1.1e-07 31.7 0.0 1.4e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|126465622|ref|YP_001040731.1| - 2.5e-06 27.3 0.0 3.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|126465622|ref|YP_001040731.1| - 7.7e-06 26.9 0.0 1.2e-05 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465622|ref|YP_001040731.1| - 2.4e-05 24.9 0.0 3.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126465622|ref|YP_001040731.1| - 0.0005 20.7 0.0 0.00077 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|126465622|ref|YP_001040731.1| - 0.0019 17.4 0.0 0.003 16.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|126465622|ref|YP_001040731.1| - 0.004 16.3 0.0 0.0052 15.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|126465622|ref|YP_001040731.1| - 0.019 14.9 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|126465622|ref|YP_001040731.1| - 0.025 14.3 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|126465622|ref|YP_001040731.1| - 0.039 14.0 0.0 0.054 13.5 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|126465622|ref|YP_001040731.1| - 0.04 13.5 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|126465622|ref|YP_001040731.1| - 0.046 13.4 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|126465622|ref|YP_001040731.1| - 0.088 12.6 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain DUF371 PF04027.13 gi|126465623|ref|YP_001040732.1| - 5.2e-48 162.4 0.2 6.5e-48 162.1 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Met_10 PF02475.16 gi|126465624|ref|YP_001040733.1| - 2e-37 128.9 0.1 3.5e-37 128.1 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|126465624|ref|YP_001040733.1| - 1.8e-14 53.3 0.6 1.8e-14 53.3 0.6 2.1 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltr_RsmB-F PF01189.17 gi|126465624|ref|YP_001040733.1| - 0.0006 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 gi|126465624|ref|YP_001040733.1| - 0.0022 17.2 0.1 0.0024 17.1 0.1 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.17 gi|126465624|ref|YP_001040733.1| - 0.0048 16.3 0.2 0.0091 15.4 0.0 1.5 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|126465624|ref|YP_001040733.1| - 0.0082 15.7 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|126465624|ref|YP_001040733.1| - 0.027 14.1 0.0 0.092 12.4 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical protein 95 PrmA PF06325.13 gi|126465624|ref|YP_001040733.1| - 0.036 13.5 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NAD_kinase PF01513.21 gi|126465625|ref|YP_001040734.1| - 1.1e-27 97.1 0.1 1.3e-27 96.8 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|126465625|ref|YP_001040734.1| - 0.00021 20.9 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PIN_6 PF17146.4 gi|126465626|ref|YP_001040735.1| - 2.5e-20 72.7 0.2 3.5e-20 72.3 0.2 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease zf-ribbon_3 PF13248.6 gi|126465626|ref|YP_001040735.1| - 1.3e-05 24.4 2.9 2e-05 23.8 2.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|126465626|ref|YP_001040735.1| - 0.00097 19.1 5.1 0.017 15.1 0.3 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain RecR PF02132.15 gi|126465626|ref|YP_001040735.1| - 0.0045 16.5 0.1 0.01 15.4 0.1 1.6 1 0 0 1 1 1 1 RecR protein NOB1_Zn_bind PF08772.11 gi|126465626|ref|YP_001040735.1| - 0.005 17.0 0.2 0.011 15.8 0.2 1.6 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|126465626|ref|YP_001040735.1| - 0.0067 16.4 0.3 0.011 15.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|126465626|ref|YP_001040735.1| - 0.018 14.7 1.5 4.6 7.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|126465626|ref|YP_001040735.1| - 0.021 14.6 2.4 0.062 13.1 0.4 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|126465626|ref|YP_001040735.1| - 0.029 14.5 3.1 0.54 10.4 3.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|126465626|ref|YP_001040735.1| - 0.035 13.6 1.2 5.8 6.5 0.2 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|126465626|ref|YP_001040735.1| - 0.092 12.8 0.3 0.13 12.3 0.3 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|126465626|ref|YP_001040735.1| - 0.093 12.9 1.7 7.6 6.8 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rad50_zn_hook PF04423.14 gi|126465626|ref|YP_001040735.1| - 0.14 12.1 2.3 1.6 8.6 0.2 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif Cript PF10235.9 gi|126465626|ref|YP_001040735.1| - 0.18 12.4 1.5 0.95 10.1 0.8 2.1 2 0 0 2 2 2 0 Microtubule-associated protein CRIPT Cys_rich_CPCC PF14206.6 gi|126465626|ref|YP_001040735.1| - 0.26 11.1 2.4 0.63 9.9 2.4 1.7 1 0 0 1 1 1 0 Cysteine-rich CPCC FdhE PF04216.12 gi|126465626|ref|YP_001040735.1| - 1 9.2 2.6 19 5.0 0.1 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Prim_Zn_Ribbon PF08273.12 gi|126465626|ref|YP_001040735.1| - 1.6 9.1 5.1 15 6.0 0.8 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-Di19 PF05605.12 gi|126465626|ref|YP_001040735.1| - 2.5 8.5 4.5 15 5.9 0.2 2.6 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn-C2H2_12 PF18112.1 gi|126465626|ref|YP_001040735.1| - 4.2 7.9 5.6 36 4.9 0.5 2.6 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-ISL3 PF14690.6 gi|126465626|ref|YP_001040735.1| - 6 7.6 7.9 6.2 7.6 0.1 2.8 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Methyltr_RsmB-F PF01189.17 gi|126465627|ref|YP_001040736.1| - 1.5e-40 139.0 0.0 2.1e-40 138.5 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|126465627|ref|YP_001040736.1| - 7.9e-15 54.6 0.5 1.8e-14 53.4 0.5 1.6 1 0 0 1 1 1 1 PUA domain Methyltr_RsmF_N PF17125.5 gi|126465627|ref|YP_001040736.1| - 0.041 14.4 0.0 0.74 10.3 0.0 2.5 3 0 0 3 3 3 0 N-terminal domain of 16S rRNA methyltransferase RsmF DUF1408 PF07193.11 gi|126465627|ref|YP_001040736.1| - 0.1 12.8 1.5 0.71 10.0 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1408) Methyltransf_11 PF08241.12 gi|126465628|ref|YP_001040737.1| - 1e-17 64.6 0.0 2e-17 63.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465628|ref|YP_001040737.1| - 8.1e-13 48.9 0.0 1.2e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|126465628|ref|YP_001040737.1| - 2.4e-09 36.9 0.0 3.8e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|126465628|ref|YP_001040737.1| - 6.1e-09 35.9 0.0 7.3e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|126465628|ref|YP_001040737.1| - 4e-08 33.2 0.0 6.7e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126465628|ref|YP_001040737.1| - 1.7e-07 31.9 0.0 3.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|126465628|ref|YP_001040737.1| - 8.3e-05 22.3 0.0 0.00011 21.9 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|126465628|ref|YP_001040737.1| - 0.0061 15.5 0.1 0.012 14.6 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) DREV PF05219.12 gi|126465628|ref|YP_001040737.1| - 0.021 13.9 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase DUF2283 PF10049.9 gi|126465630|ref|YP_001040739.1| - 1.3e-11 44.5 1.2 1.8e-11 44.1 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Nitro_FeMo-Co PF02579.17 gi|126465632|ref|YP_001040741.1| - 3.3e-05 24.1 0.0 5.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF1892 PF08987.10 gi|126465632|ref|YP_001040741.1| - 0.012 15.8 1.5 0.016 15.4 1.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1892) Response_reg PF00072.24 gi|126465632|ref|YP_001040741.1| - 0.046 13.9 0.0 0.072 13.3 0.0 1.5 1 1 0 1 1 1 0 Response regulator receiver domain DEAD PF00270.29 gi|126465632|ref|YP_001040741.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase AGOG PF09171.10 gi|126465633|ref|YP_001040742.1| - 5.5e-77 258.5 3.6 7.2e-77 258.1 3.6 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase P4Ha_N PF08336.11 gi|126465633|ref|YP_001040742.1| - 0.01 15.9 0.8 0.028 14.4 0.6 1.8 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Creatininase PF02633.14 gi|126465634|ref|YP_001040743.1| - 1e-23 84.1 0.0 1.3e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase Maf PF02545.14 gi|126465635|ref|YP_001040744.1| - 8.6e-48 162.3 0.0 1e-47 162.1 0.0 1.0 1 0 0 1 1 1 1 Maf-like protein ADH_zinc_N PF00107.26 gi|126465635|ref|YP_001040744.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Radical_SAM PF04055.21 gi|126465636|ref|YP_001040745.1| - 1.5e-12 48.2 0.3 7e-12 46.0 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465636|ref|YP_001040745.1| - 2.2e-06 28.0 0.0 4.9e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126465636|ref|YP_001040745.1| - 0.00072 19.7 0.0 0.0022 18.1 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain OST_IS PF18246.1 gi|126465637|ref|YP_001040746.1| - 0.26 11.6 1.9 13 6.1 0.2 2.2 2 0 0 2 2 2 0 Oligosaccharyltransferase Insert domain DUF4147 PF13660.6 gi|126465638|ref|YP_001040747.1| - 1.5e-64 217.7 0.0 2e-64 217.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|126465638|ref|YP_001040747.1| - 2.2e-31 108.3 0.0 4.3e-31 107.3 0.0 1.4 1 0 0 1 1 1 1 MOFRL family tRNA-synt_1 PF00133.22 gi|126465639|ref|YP_001040748.1| - 1.9e-121 406.3 0.1 3.1e-120 402.2 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|126465639|ref|YP_001040748.1| - 1.1e-31 110.0 3.3 3.4e-16 59.0 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|126465639|ref|YP_001040748.1| - 3e-29 101.9 5.8 5.5e-29 101.1 5.8 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|126465639|ref|YP_001040748.1| - 7.1e-05 22.4 0.0 0.038 13.5 0.0 2.4 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 zf-ISL3 PF14690.6 gi|126465639|ref|YP_001040748.1| - 0.022 15.4 4.9 8 7.2 0.6 3.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Mut7-C PF01927.16 gi|126465639|ref|YP_001040748.1| - 0.023 14.8 2.7 12 5.9 0.2 4.3 2 2 0 2 2 2 0 Mut7-C RNAse domain zf-TFIIB PF13453.6 gi|126465639|ref|YP_001040748.1| - 0.05 12.9 3.2 7.6 6.0 0.0 3.5 3 0 0 3 3 3 0 Transcription factor zinc-finger DZR PF12773.7 gi|126465639|ref|YP_001040748.1| - 0.099 12.7 1.6 7 6.8 0.2 3.1 3 0 0 3 3 3 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|126465639|ref|YP_001040748.1| - 0.21 11.7 1.8 2.9 8.1 0.4 2.9 2 1 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|126465639|ref|YP_001040748.1| - 0.26 10.9 1.6 47 3.6 0.1 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|126465639|ref|YP_001040748.1| - 0.37 10.9 2.8 2 8.5 0.2 3.3 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ACC PF17848.1 gi|126465639|ref|YP_001040748.1| - 0.55 10.3 5.9 8.2 6.6 0.1 4.0 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain PHP_C PF13263.6 gi|126465640|ref|YP_001040749.1| - 1.6e-16 59.8 0.0 2.9e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|126465640|ref|YP_001040749.1| - 2.4e-09 37.7 0.0 3e-09 37.4 0.0 1.4 1 1 0 1 1 1 1 PHP domain DUF4428 PF14471.6 gi|126465641|ref|YP_001040750.1| - 0.00011 22.1 5.3 0.00012 22.0 2.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) zf-C3HC4_3 PF13920.6 gi|126465641|ref|YP_001040750.1| - 0.00061 19.6 5.2 0.038 13.9 5.2 2.2 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) C1_2 PF03107.16 gi|126465641|ref|YP_001040750.1| - 0.00093 19.5 5.1 0.014 15.7 0.4 2.2 2 0 0 2 2 2 1 C1 domain DZR PF12773.7 gi|126465641|ref|YP_001040750.1| - 0.001 19.1 5.6 0.036 14.1 5.7 2.4 1 1 1 2 2 2 1 Double zinc ribbon DUF1272 PF06906.11 gi|126465641|ref|YP_001040750.1| - 0.0031 17.6 7.5 0.047 13.8 7.5 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|126465641|ref|YP_001040750.1| - 0.0036 17.4 6.0 0.046 13.8 0.4 2.3 1 1 1 2 2 2 1 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|126465641|ref|YP_001040750.1| - 0.0036 17.2 2.1 0.18 11.7 0.6 2.3 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 PyrI_C PF02748.15 gi|126465641|ref|YP_001040750.1| - 0.0063 16.4 2.6 0.052 13.5 1.0 2.2 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-ribbon_3 PF13248.6 gi|126465641|ref|YP_001040750.1| - 0.0073 15.7 8.1 0.26 10.7 0.3 3.2 3 0 0 3 3 3 1 zinc-ribbon domain zf-C6H2 PF15801.5 gi|126465641|ref|YP_001040750.1| - 0.0082 16.4 6.2 0.035 14.4 0.3 2.9 2 1 1 3 3 3 1 zf-MYND-like zinc finger, mRNA-binding zinc_ribbon_10 PF10058.9 gi|126465641|ref|YP_001040750.1| - 0.012 15.3 7.1 0.64 9.8 0.8 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein A2L_zn_ribbon PF08792.10 gi|126465641|ref|YP_001040750.1| - 0.02 14.6 5.3 0.066 12.9 0.8 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.6 gi|126465641|ref|YP_001040750.1| - 0.02 15.3 7.2 11 6.7 0.2 3.3 3 0 0 3 3 3 0 Zinc-finger double domain zinc-ribbons_6 PF07191.12 gi|126465641|ref|YP_001040750.1| - 0.023 14.7 5.2 1.1 9.3 2.5 2.5 1 1 1 2 2 2 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|126465641|ref|YP_001040750.1| - 0.026 14.2 8.5 3.3 7.6 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|126465641|ref|YP_001040750.1| - 0.044 13.7 12.0 0.68 9.9 8.2 2.7 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin PF00301.20 gi|126465641|ref|YP_001040750.1| - 0.046 13.8 3.5 6 7.0 0.0 2.9 3 0 0 3 3 3 0 Rubredoxin HypA PF01155.19 gi|126465641|ref|YP_001040750.1| - 0.098 12.7 3.9 4 7.5 3.9 2.1 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HscB_4_cys PF18256.1 gi|126465641|ref|YP_001040750.1| - 0.1 12.4 6.5 0.53 10.1 0.1 3.3 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf-LITAF-like PF10601.9 gi|126465641|ref|YP_001040750.1| - 0.13 12.5 7.2 12 6.2 4.9 2.9 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-C2HC5 PF06221.13 gi|126465641|ref|YP_001040750.1| - 0.13 12.2 3.1 0.92 9.5 1.4 2.2 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.12 gi|126465641|ref|YP_001040750.1| - 0.16 11.5 8.5 0.62 9.6 4.9 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|126465641|ref|YP_001040750.1| - 0.19 11.4 6.2 4.3 7.0 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-CHY PF05495.12 gi|126465641|ref|YP_001040750.1| - 0.39 11.2 6.2 0.71 10.4 6.2 1.5 1 1 0 1 1 1 0 CHY zinc finger zf-Mss51 PF13824.6 gi|126465641|ref|YP_001040750.1| - 0.4 10.8 4.7 9.3 6.4 6.0 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-BED PF02892.15 gi|126465641|ref|YP_001040750.1| - 0.56 10.3 8.7 1.5 8.9 0.6 2.7 2 1 1 3 3 3 0 BED zinc finger Metallothio_Pro PF02069.16 gi|126465641|ref|YP_001040750.1| - 0.6 10.4 6.8 1.4 9.2 6.8 1.7 1 1 0 1 1 1 0 Prokaryotic metallothionein Zn_Tnp_IS1595 PF12760.7 gi|126465641|ref|YP_001040750.1| - 0.63 10.1 9.7 0.73 9.8 0.5 2.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Anti-TRAP PF15777.5 gi|126465641|ref|YP_001040750.1| - 0.71 9.9 4.7 2.3 8.3 0.3 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-Di19 PF05605.12 gi|126465641|ref|YP_001040750.1| - 1.3 9.4 11.8 2.4 8.5 0.6 3.1 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding BIR PF00653.21 gi|126465641|ref|YP_001040750.1| - 1.3 9.7 7.1 34 5.2 2.4 2.5 1 1 1 2 2 2 0 Inhibitor of Apoptosis domain zf-RING_5 PF14634.6 gi|126465641|ref|YP_001040750.1| - 1.5 8.9 9.6 1.6e+02 2.4 9.6 2.8 1 1 0 1 1 1 0 zinc-RING finger domain zf-C2H2_4 PF13894.6 gi|126465641|ref|YP_001040750.1| - 1.7 9.7 9.8 6.2 7.9 0.5 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zf-TFIIB PF13453.6 gi|126465641|ref|YP_001040750.1| - 2.3 7.6 8.8 3.6 7.0 5.6 2.3 1 1 2 3 3 3 0 Transcription factor zinc-finger zf-RING_7 PF02591.15 gi|126465641|ref|YP_001040750.1| - 2.7 8.2 6.4 5.4 7.3 0.1 3.0 2 1 0 2 2 2 0 C4-type zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|126465641|ref|YP_001040750.1| - 3.2 7.7 10.3 3 7.8 0.6 2.9 2 1 0 3 3 3 0 Cysteine-rich CPXCG zf-RING_2 PF13639.6 gi|126465641|ref|YP_001040750.1| - 3.6 8.0 8.2 24 5.4 8.2 2.3 1 1 0 1 1 1 0 Ring finger domain Metallophos PF00149.28 gi|126465642|ref|YP_001040751.1| - 8.5e-17 62.3 0.3 1.1e-16 61.9 0.3 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126465642|ref|YP_001040751.1| - 7.6e-08 32.7 0.0 3.9e-07 30.4 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Glyco_transf_4 PF13439.6 gi|126465642|ref|YP_001040751.1| - 0.034 14.2 0.0 0.065 13.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Rhomboid PF01694.22 gi|126465643|ref|YP_001040752.1| - 1.1e-37 129.3 17.8 1.1e-37 129.3 17.8 1.8 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|126465643|ref|YP_001040752.1| - 4.3e-05 24.0 0.9 4.3e-05 24.0 0.9 2.6 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) DUF1614 PF07758.11 gi|126465645|ref|YP_001040754.1| - 1.6e-09 38.0 17.2 7.3e-09 35.9 17.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1614) RimK PF08443.11 gi|126465646|ref|YP_001040755.1| - 2.4e-28 99.0 0.0 3.2e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|126465646|ref|YP_001040755.1| - 1.9e-09 37.2 0.0 3e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|126465646|ref|YP_001040755.1| - 4e-08 33.5 0.0 9.6e-08 32.2 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|126465646|ref|YP_001040755.1| - 1.3e-06 28.1 0.6 0.00042 19.9 0.0 2.4 1 1 0 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain ATPgrasp_ST PF14397.6 gi|126465646|ref|YP_001040755.1| - 1.5e-06 27.7 0.0 0.036 13.3 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|126465646|ref|YP_001040755.1| - 5.1e-06 25.9 0.0 0.003 16.8 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp D123 PF07065.14 gi|126465646|ref|YP_001040755.1| - 0.098 11.8 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 D123 Rimk_N PF18030.1 gi|126465646|ref|YP_001040755.1| - 0.12 12.8 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 RimK PreATP-grasp domain CPSase_L_D2 PF02786.17 gi|126465646|ref|YP_001040755.1| - 0.13 11.7 0.0 0.36 10.3 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1072 PF06380.11 gi|126465647|ref|YP_001040756.1| - 0.016 15.0 0.2 0.03 14.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1072) Yip1 PF04893.17 gi|126465647|ref|YP_001040756.1| - 0.048 13.4 11.8 0.058 13.1 11.8 1.2 1 0 0 1 1 1 0 Yip1 domain DUF4500 PF14937.6 gi|126465647|ref|YP_001040756.1| - 0.085 12.9 0.2 0.085 12.9 0.2 1.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4500) YesK PF14150.6 gi|126465647|ref|YP_001040756.1| - 1.6 9.0 14.0 0.091 13.0 8.5 1.7 2 0 0 2 2 2 0 YesK-like protein S_4TM PF18159.1 gi|126465647|ref|YP_001040756.1| - 1.9 7.7 6.4 0.33 10.2 2.3 1.6 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain DUF2070 PF09843.9 gi|126465647|ref|YP_001040756.1| - 3.2 5.9 14.3 3.4 5.9 14.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) PNP_UDP_1 PF01048.20 gi|126465649|ref|YP_001040758.1| - 1.9e-46 158.3 0.0 2.1e-46 158.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Glyco_transf_11 PF01531.16 gi|126465649|ref|YP_001040758.1| - 0.047 12.9 0.0 0.092 11.9 0.0 1.4 2 0 0 2 2 2 0 Glycosyl transferase family 11 Pribosyltran PF00156.27 gi|126465650|ref|YP_001040759.1| - 8.1e-19 67.7 0.0 1.1e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|126465650|ref|YP_001040759.1| - 0.036 13.5 0.0 0.084 12.3 0.0 1.5 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase Flavin_Reduct PF01613.18 gi|126465651|ref|YP_001040760.1| - 5e-26 91.6 0.0 5.9e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain NLBH PF05211.12 gi|126465652|ref|YP_001040761.1| - 0.087 12.4 0.1 0.091 12.3 0.1 1.0 1 0 0 1 1 1 0 Neuraminyllactose-binding hemagglutinin precursor (NLBH) YbjQ_1 PF01906.17 gi|126465655|ref|YP_001040764.1| - 5e-39 133.1 0.8 5.5e-39 133.0 0.8 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|126465655|ref|YP_001040764.1| - 6.7e-06 26.4 0.6 0.11 12.9 0.1 2.1 1 1 0 2 2 2 2 Selenium binding protein DUF4156 PF13698.6 gi|126465655|ref|YP_001040764.1| - 0.02 15.2 0.0 0.029 14.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) CbtA PF09490.10 gi|126465657|ref|YP_001040766.1| - 0.0019 18.0 0.9 1.3 8.7 0.3 2.2 2 0 0 2 2 2 2 Probable cobalt transporter subunit (CbtA) HKR_ArcB_TM PF18415.1 gi|126465657|ref|YP_001040766.1| - 0.033 15.0 1.2 0.033 15.0 1.2 2.3 2 2 1 3 3 3 0 Histidine kinase receptor ArcB trans-membrane domain DUF5455 PF17537.2 gi|126465657|ref|YP_001040766.1| - 0.47 10.9 6.5 0.089 13.2 2.9 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5455) DUF1427 PF07235.11 gi|126465657|ref|YP_001040766.1| - 2.9 7.9 7.0 0.11 12.5 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) PadR PF03551.14 gi|126465658|ref|YP_001040767.1| - 1.5e-21 76.1 0.6 2.4e-21 75.5 0.6 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|126465658|ref|YP_001040767.1| - 0.00067 20.3 0.3 0.0011 19.6 0.3 1.4 1 1 0 1 1 1 1 Replication terminator protein FUR PF01475.19 gi|126465658|ref|YP_001040767.1| - 0.0033 17.6 0.1 0.0049 17.0 0.1 1.4 1 1 0 1 1 1 1 Ferric uptake regulator family DUF4364 PF14277.6 gi|126465658|ref|YP_001040767.1| - 0.0033 17.2 0.2 0.0051 16.6 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.17 gi|126465658|ref|YP_001040767.1| - 0.0082 16.0 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|126465658|ref|YP_001040767.1| - 0.012 15.6 0.2 0.025 14.5 0.2 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix DUF505 PF04458.12 gi|126465658|ref|YP_001040767.1| - 0.047 12.0 0.2 0.056 11.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|126465658|ref|YP_001040767.1| - 0.064 13.5 0.2 0.092 12.9 0.2 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|126465658|ref|YP_001040767.1| - 0.087 13.1 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF1648 PF07853.11 gi|126465659|ref|YP_001040768.1| - 1.3e-10 40.8 0.6 1.3e-10 40.8 0.6 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) DUF4010 PF13194.6 gi|126465659|ref|YP_001040768.1| - 0.035 13.8 1.6 0.061 13.0 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) Peptidase_A24 PF01478.18 gi|126465659|ref|YP_001040768.1| - 0.61 10.5 6.2 0.23 11.9 3.3 1.8 2 0 0 2 2 2 0 Type IV leader peptidase family Polbeta PF18765.1 gi|126465660|ref|YP_001040769.1| - 1.4e-18 66.7 0.1 2.3e-18 66.1 0.1 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126465660|ref|YP_001040769.1| - 3.3e-08 33.7 0.9 4.1e-08 33.4 0.9 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain N6_Mtase PF02384.16 gi|126465661|ref|YP_001040770.1| - 3.6e-110 368.1 0.0 5e-110 367.6 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|126465661|ref|YP_001040770.1| - 2.6e-15 57.3 3.7 2.6e-15 57.3 3.7 2.7 4 0 0 4 4 4 1 HsdM N-terminal domain MTS PF05175.14 gi|126465661|ref|YP_001040770.1| - 0.0064 16.0 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|126465661|ref|YP_001040770.1| - 0.0067 16.1 0.0 0.032 13.9 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TrmB PF01978.19 gi|126465661|ref|YP_001040770.1| - 0.029 14.2 1.7 0.057 13.3 0.0 2.3 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Eco57I PF07669.11 gi|126465661|ref|YP_001040770.1| - 0.075 13.5 0.5 0.81 10.2 0.1 2.8 3 1 0 3 3 3 0 Eco57I restriction-modification methylase DUF4976 PF16347.5 gi|126465661|ref|YP_001040770.1| - 0.12 12.7 0.3 0.12 12.7 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4976) Methylase_S PF01420.19 gi|126465662|ref|YP_001040771.1| - 3.7e-49 167.2 11.5 7.4e-29 101.1 1.1 2.7 3 0 0 3 3 3 2 Type I restriction modification DNA specificity domain HIRAN PF08797.11 gi|126465662|ref|YP_001040771.1| - 0.087 12.8 0.0 1.9 8.5 0.0 2.4 2 0 0 2 2 2 0 HIRAN domain SWI2_SNF2 PF18766.1 gi|126465663|ref|YP_001040772.1| - 9.2e-52 175.9 0.0 2.8e-51 174.3 0.0 1.8 2 0 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|126465663|ref|YP_001040772.1| - 1.5e-28 100.1 0.0 5e-28 98.4 0.0 1.9 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|126465663|ref|YP_001040772.1| - 3.6e-16 59.6 0.0 2.3e-15 57.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HGD-D PF06050.13 gi|126465663|ref|YP_001040772.1| - 0.0019 18.1 9.7 0.094 12.5 0.2 3.3 2 1 0 2 2 2 2 2-hydroxyglutaryl-CoA dehydratase, D-component DEAD PF00270.29 gi|126465663|ref|YP_001040772.1| - 0.026 14.3 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|126465663|ref|YP_001040772.1| - 0.21 10.3 0.0 0.58 8.8 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF45 PF01863.17 gi|126465664|ref|YP_001040773.1| - 1.7e-35 123.0 3.9 2.2e-28 99.7 0.5 2.0 1 1 1 2 2 2 2 Protein of unknown function DUF45 WLM PF08325.10 gi|126465664|ref|YP_001040773.1| - 6.2e-05 23.2 0.7 0.00012 22.2 0.2 1.7 2 0 0 2 2 2 1 WLM domain PPS_PS PF02006.16 gi|126465664|ref|YP_001040773.1| - 0.09 12.3 0.1 0.13 11.8 0.1 1.2 1 0 0 1 1 1 0 Phosphopantothenate/pantothenate synthetase Ferritin PF00210.24 gi|126465666|ref|YP_001040775.1| - 2.2e-35 121.6 2.3 2.5e-35 121.5 2.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|126465666|ref|YP_001040775.1| - 1.6e-08 35.0 3.5 4.1e-08 33.7 3.0 1.8 1 1 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|126465666|ref|YP_001040775.1| - 0.0013 18.6 0.5 0.016 15.0 0.3 2.1 2 0 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 Ferritin-like PF12902.7 gi|126465666|ref|YP_001040775.1| - 0.0018 18.2 0.4 0.008 16.1 0.0 1.8 1 1 1 2 2 2 1 Ferritin-like DUF892 PF05974.12 gi|126465666|ref|YP_001040775.1| - 0.0066 16.5 0.5 0.018 15.0 0.5 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|126465666|ref|YP_001040775.1| - 0.012 15.8 0.7 2.8 8.1 0.3 2.1 1 1 1 2 2 2 0 Ferritin-like domain ANAPC5 PF12862.7 gi|126465666|ref|YP_001040775.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 Phenol_Hydrox PF02332.18 gi|126465666|ref|YP_001040775.1| - 0.083 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Methane/Phenol/Toluene Hydroxylase OrfB_Zn_ribbon PF07282.11 gi|126465667|ref|YP_001040776.1| - 5.3e-07 29.5 0.0 1.6e-06 28.0 0.0 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HEPN PF05168.14 gi|126465668|ref|YP_001040777.1| - 6.2e-27 94.1 1.1 7.1e-27 93.9 1.1 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|126465669|ref|YP_001040778.1| - 7.7e-10 38.9 0.1 1.3e-09 38.2 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126465669|ref|YP_001040778.1| - 1.3e-09 38.0 0.1 3.4e-09 36.7 0.1 1.7 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_transf PF04439.12 gi|126465669|ref|YP_001040778.1| - 0.06 12.4 0.0 0.11 11.6 0.0 1.5 1 1 0 1 1 1 0 Streptomycin adenylyltransferase DUF294 PF03445.13 gi|126465669|ref|YP_001040778.1| - 0.23 11.3 0.0 0.34 10.7 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 EI24 PF07264.11 gi|126465671|ref|YP_001040780.1| - 0.017 15.3 10.9 0.023 15.0 10.9 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Asp4 PF16996.5 gi|126465671|ref|YP_001040780.1| - 0.061 13.1 1.2 0.32 10.8 0.2 2.3 2 0 0 2 2 2 0 Accessory secretory protein Sec Asp4 CoA_binding_3 PF13727.6 gi|126465671|ref|YP_001040780.1| - 1.3 9.0 9.0 0.062 13.3 3.0 1.7 2 0 0 2 2 2 0 CoA-binding domain Peptidase_M48_N PF16491.5 gi|126465671|ref|YP_001040780.1| - 7 6.5 10.0 24 4.8 5.0 2.1 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices SRP54 PF00448.22 gi|126465672|ref|YP_001040781.1| - 3e-75 252.2 0.0 4.1e-75 251.7 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|126465672|ref|YP_001040781.1| - 3.4e-28 98.2 0.2 9e-28 96.8 0.2 1.7 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.19 gi|126465672|ref|YP_001040781.1| - 5.1e-15 55.5 2.5 1.8e-14 53.7 0.1 3.0 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|126465672|ref|YP_001040781.1| - 3.7e-07 29.6 0.0 8.2e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|126465672|ref|YP_001040781.1| - 5e-07 29.8 0.2 2.3e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|126465672|ref|YP_001040781.1| - 1.6e-06 28.4 0.0 3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|126465672|ref|YP_001040781.1| - 4.9e-05 23.0 0.3 0.00092 18.8 0.3 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|126465672|ref|YP_001040781.1| - 5.1e-05 23.1 0.0 0.0001 22.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|126465672|ref|YP_001040781.1| - 0.00012 22.4 0.0 0.00045 20.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|126465672|ref|YP_001040781.1| - 0.00024 21.2 0.0 0.00096 19.2 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase ResIII PF04851.15 gi|126465672|ref|YP_001040781.1| - 0.001 19.1 0.2 0.03 14.3 0.0 2.4 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|126465672|ref|YP_001040781.1| - 0.0012 19.3 0.0 0.0039 17.6 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain MeaB PF03308.16 gi|126465672|ref|YP_001040781.1| - 0.0014 17.7 0.1 0.028 13.4 0.0 2.3 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 gi|126465672|ref|YP_001040781.1| - 0.0015 19.0 0.1 0.0015 19.0 0.1 2.9 3 2 0 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|126465672|ref|YP_001040781.1| - 0.0031 17.3 0.0 0.039 13.7 0.0 2.5 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|126465672|ref|YP_001040781.1| - 0.0049 16.3 0.0 0.0092 15.5 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase 6PF2K PF01591.18 gi|126465672|ref|YP_001040781.1| - 0.0053 16.1 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase MobB PF03205.14 gi|126465672|ref|YP_001040781.1| - 0.01 15.7 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|126465672|ref|YP_001040781.1| - 0.016 15.1 0.0 0.047 13.6 0.0 1.8 2 0 0 2 2 1 0 Adenylylsulphate kinase ATPase PF06745.13 gi|126465672|ref|YP_001040781.1| - 0.025 13.9 0.1 0.089 12.1 0.1 2.0 1 1 0 1 1 1 0 KaiC AAA PF00004.29 gi|126465672|ref|YP_001040781.1| - 0.027 14.9 0.9 0.18 12.2 0.3 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PFOR_II PF17147.4 gi|126465672|ref|YP_001040781.1| - 0.035 14.4 0.0 0.89 9.9 0.0 2.6 2 0 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_31 PF13614.6 gi|126465672|ref|YP_001040781.1| - 0.035 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain RHH_3 PF12651.7 gi|126465672|ref|YP_001040781.1| - 0.041 13.8 0.3 21 5.2 0.8 3.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain Thymidylate_kin PF02223.17 gi|126465672|ref|YP_001040781.1| - 0.054 13.2 0.1 0.37 10.5 0.1 2.3 2 0 0 2 2 2 0 Thymidylate kinase ATP_bind_1 PF03029.17 gi|126465672|ref|YP_001040781.1| - 0.089 12.6 0.0 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|126465672|ref|YP_001040781.1| - 0.092 13.0 0.1 0.31 11.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|126465672|ref|YP_001040781.1| - 0.12 12.9 0.1 0.38 11.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|126465672|ref|YP_001040781.1| - 0.37 10.3 2.1 2 8.0 2.1 2.2 1 1 0 1 1 1 0 AAA domain THUMP PF02926.17 gi|126465674|ref|YP_001040783.1| - 1.8e-09 37.8 0.3 4.8e-09 36.5 0.3 1.8 1 0 0 1 1 1 1 THUMP domain Rad50_zn_hook PF04423.14 gi|126465674|ref|YP_001040783.1| - 0.029 14.2 0.2 0.15 11.9 0.2 2.3 1 0 0 1 1 1 0 Rad50 zinc hook motif VATC PF18716.1 gi|126465674|ref|YP_001040783.1| - 0.03 14.2 0.6 0.06 13.2 0.6 1.5 1 0 0 1 1 1 0 Vms1-associating treble clef domain RNA_pol_N PF01194.17 gi|126465674|ref|YP_001040783.1| - 0.063 13.6 0.5 0.61 10.4 0.0 2.8 3 0 0 3 3 3 0 RNA polymerases N / 8 kDa subunit Ribosomal_L21e PF01157.18 gi|126465675|ref|YP_001040784.1| - 8.5e-39 131.5 1.7 9.4e-39 131.3 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|126465676|ref|YP_001040785.1| - 3.5e-16 59.6 5.4 6.6e-16 58.7 5.4 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 HRDC PF00570.23 gi|126465676|ref|YP_001040785.1| - 0.0018 18.2 0.4 0.031 14.3 0.1 2.2 1 1 1 2 2 2 1 HRDC domain DUF1822 PF08852.11 gi|126465676|ref|YP_001040785.1| - 0.018 14.1 0.1 0.019 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1822) YjcZ PF13990.6 gi|126465676|ref|YP_001040785.1| - 0.018 14.4 0.2 0.021 14.2 0.2 1.1 1 0 0 1 1 1 0 YjcZ-like protein F-box PF00646.33 gi|126465676|ref|YP_001040785.1| - 0.13 12.2 0.1 0.63 10.0 0.1 2.1 3 0 0 3 3 3 0 F-box domain DUF655 PF04919.12 gi|126465677|ref|YP_001040786.1| - 4.3e-64 215.8 1.5 5e-64 215.6 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|126465677|ref|YP_001040786.1| - 0.00022 21.4 0.2 0.00052 20.2 0.2 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|126465677|ref|YP_001040786.1| - 0.0092 16.2 0.1 0.019 15.2 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|126465677|ref|YP_001040786.1| - 0.089 12.7 0.1 0.24 11.3 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|126465677|ref|YP_001040786.1| - 0.09 13.4 0.9 0.89 10.2 0.0 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|126465678|ref|YP_001040787.1| - 3.2e-33 114.9 0.0 3.9e-33 114.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|126465678|ref|YP_001040787.1| - 0.028 15.1 0.0 0.06 14.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|126465678|ref|YP_001040787.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|126465678|ref|YP_001040787.1| - 0.12 12.1 0.0 0.3 10.9 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126465678|ref|YP_001040787.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MTS PF05175.14 gi|126465679|ref|YP_001040788.1| - 4.8e-15 55.5 0.0 3.4e-14 52.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|126465679|ref|YP_001040788.1| - 2.2e-06 27.3 0.0 3.6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|126465679|ref|YP_001040788.1| - 2.6e-06 28.1 0.0 7.4e-06 26.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465679|ref|YP_001040788.1| - 2.1e-05 25.1 0.0 4.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126465679|ref|YP_001040788.1| - 6.1e-05 23.0 0.0 0.00021 21.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126465679|ref|YP_001040788.1| - 0.00029 20.7 0.0 0.00033 20.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126465679|ref|YP_001040788.1| - 0.00045 19.9 0.0 0.0048 16.6 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|126465679|ref|YP_001040788.1| - 0.0055 16.5 0.0 0.0072 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|126465679|ref|YP_001040788.1| - 0.008 15.9 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_11 PF08241.12 gi|126465679|ref|YP_001040788.1| - 0.035 14.8 0.0 0.07 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SpoU_methylase PF00588.19 gi|126465680|ref|YP_001040789.1| - 7.6e-33 113.7 0.0 9.6e-33 113.3 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|126465680|ref|YP_001040789.1| - 4.8e-06 26.6 0.0 0.032 14.1 0.0 2.4 1 1 1 2 2 2 2 SAM-dependent RNA methyltransferase OTCace PF00185.24 gi|126465680|ref|YP_001040789.1| - 0.029 14.4 0.1 0.048 13.7 0.1 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AA_kinase PF00696.28 gi|126465681|ref|YP_001040790.1| - 9e-23 81.1 0.1 3e-22 79.4 0.1 1.7 1 1 0 1 1 1 1 Amino acid kinase family SIS PF01380.22 gi|126465682|ref|YP_001040791.1| - 7.9e-43 145.4 0.3 7.6e-25 87.3 0.3 2.8 2 1 1 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|126465682|ref|YP_001040791.1| - 5.7e-19 68.6 0.0 1.1e-18 67.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|126465682|ref|YP_001040791.1| - 1.9e-16 60.1 0.0 3.3e-16 59.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|126465682|ref|YP_001040791.1| - 1.2e-05 25.4 0.2 3.6e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|126465682|ref|YP_001040791.1| - 0.00024 20.1 0.0 0.00039 19.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4350 PF14258.6 gi|126465682|ref|YP_001040791.1| - 0.042 14.3 0.1 0.61 10.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) NTP_transferase PF00483.23 gi|126465683|ref|YP_001040792.1| - 1.2e-15 57.8 0.0 1.5e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|126465683|ref|YP_001040792.1| - 1.7e-14 52.9 8.4 1.9e-07 30.5 0.1 4.6 3 2 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|126465683|ref|YP_001040792.1| - 8.2e-07 28.7 4.6 0.28 11.0 0.6 4.5 4 0 0 4 4 4 3 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|126465683|ref|YP_001040792.1| - 2.6e-06 27.9 0.0 3.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain MS_channel PF00924.18 gi|126465684|ref|YP_001040793.1| - 7.4e-55 185.7 1.5 7.4e-55 185.7 1.5 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF432 PF04254.13 gi|126465686|ref|YP_001040795.1| - 5.8e-27 94.3 1.0 7.3e-27 94.0 0.2 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF432) ThiS PF02597.20 gi|126465687|ref|YP_001040796.1| - 6.8e-07 29.8 0.1 7.5e-07 29.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family ThiS PF02597.20 gi|126465688|ref|YP_001040797.1| - 1e-06 29.3 0.0 1.2e-06 29.0 0.0 1.2 1 0 0 1 1 1 1 ThiS family S4 PF01479.25 gi|126465688|ref|YP_001040797.1| - 0.00024 20.8 0.8 0.00042 20.0 0.2 1.7 2 0 0 2 2 2 1 S4 domain TGS PF02824.21 gi|126465688|ref|YP_001040797.1| - 0.0073 16.3 0.0 0.031 14.3 0.0 1.8 1 1 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|126465688|ref|YP_001040797.1| - 0.02 14.7 0.0 6.3 6.7 0.0 2.2 2 0 0 2 2 2 0 Mut7-C ubiquitin Ribosomal_L50 PF10501.9 gi|126465688|ref|YP_001040797.1| - 0.071 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal subunit 39S FHA PF00498.26 gi|126465688|ref|YP_001040797.1| - 0.095 13.1 0.1 0.2 12.0 0.0 1.6 2 0 0 2 2 2 0 FHA domain ThiS-like PF14453.6 gi|126465688|ref|YP_001040797.1| - 0.1 12.6 0.2 1.4 9.0 0.1 2.5 2 1 0 2 2 2 0 ThiS-like ubiquitin ThiF PF00899.21 gi|126465689|ref|YP_001040798.1| - 5e-64 216.0 0.0 6.2e-64 215.7 0.0 1.0 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|126465689|ref|YP_001040798.1| - 0.032 13.6 0.1 0.048 13.0 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|126465689|ref|YP_001040798.1| - 0.17 11.5 0.4 5.8 6.5 0.1 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thi4 PF01946.17 gi|126465689|ref|YP_001040798.1| - 0.17 11.1 0.2 0.27 10.5 0.2 1.2 1 0 0 1 1 1 0 Thi4 family DAO PF01266.24 gi|126465689|ref|YP_001040798.1| - 4 6.9 4.5 6.4 6.2 3.7 1.6 1 1 0 2 2 2 0 FAD dependent oxidoreductase MMR_HSR1 PF01926.23 gi|126465690|ref|YP_001040799.1| - 3.7e-15 56.0 0.0 3.8e-11 43.1 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|126465690|ref|YP_001040799.1| - 2e-14 53.8 0.0 3.1e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|126465690|ref|YP_001040799.1| - 1.7e-11 43.9 0.1 0.0001 21.8 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|126465690|ref|YP_001040799.1| - 6.9e-08 32.7 0.8 0.01 15.9 0.1 3.1 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|126465690|ref|YP_001040799.1| - 8.3e-05 22.2 0.3 0.0017 17.9 0.0 2.3 2 1 0 3 3 3 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|126465690|ref|YP_001040799.1| - 0.0026 17.4 0.0 0.047 13.3 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain IIGP PF05049.13 gi|126465690|ref|YP_001040799.1| - 0.027 13.5 0.0 0.039 13.0 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) PduV-EutP PF10662.9 gi|126465690|ref|YP_001040799.1| - 0.034 13.9 0.0 0.43 10.3 0.0 2.2 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|126465690|ref|YP_001040799.1| - 0.048 14.0 0.0 0.095 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|126465690|ref|YP_001040799.1| - 0.07 13.7 0.0 0.25 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|126465690|ref|YP_001040799.1| - 0.14 11.1 0.1 0.91 8.4 0.1 2.0 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|126465690|ref|YP_001040799.1| - 0.17 12.1 0.2 1.9 8.7 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|126465691|ref|YP_001040800.1| - 4.1e-23 82.3 0.0 7.7e-23 81.5 0.0 1.4 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|126465691|ref|YP_001040800.1| - 3e-08 34.2 0.1 8.7e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|126465691|ref|YP_001040800.1| - 3.4e-06 27.4 0.0 6.5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|126465691|ref|YP_001040800.1| - 7e-06 26.5 0.0 1.8e-05 25.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|126465691|ref|YP_001040800.1| - 0.00021 20.8 0.9 0.00031 20.3 0.3 1.4 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|126465691|ref|YP_001040800.1| - 0.00022 21.4 0.1 0.0005 20.2 0.0 1.6 1 1 1 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|126465691|ref|YP_001040800.1| - 0.00026 21.4 0.0 0.00029 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|126465691|ref|YP_001040800.1| - 0.00031 20.8 0.1 0.00057 19.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|126465691|ref|YP_001040800.1| - 0.00043 20.1 0.2 0.83 9.4 0.0 2.4 2 1 0 2 2 2 2 Cytidylate kinase Zeta_toxin PF06414.12 gi|126465691|ref|YP_001040800.1| - 0.00057 19.2 0.0 0.00087 18.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 gi|126465691|ref|YP_001040800.1| - 0.00063 19.8 0.0 0.0013 18.8 0.0 1.6 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|126465691|ref|YP_001040800.1| - 0.0012 18.6 0.8 0.42 10.3 0.0 2.9 1 1 1 3 3 3 1 Thymidylate kinase CPT PF07931.12 gi|126465691|ref|YP_001040800.1| - 0.0012 18.7 0.0 0.036 13.9 0.0 2.1 2 0 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|126465691|ref|YP_001040800.1| - 0.003 17.3 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|126465691|ref|YP_001040800.1| - 0.0033 16.7 0.0 0.004 16.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.13 gi|126465691|ref|YP_001040800.1| - 0.0045 16.2 0.0 0.0083 15.4 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain ATPase PF06745.13 gi|126465691|ref|YP_001040800.1| - 0.0058 16.0 4.2 0.16 11.3 2.3 2.8 2 1 0 2 2 2 1 KaiC Hydin_ADK PF17213.3 gi|126465691|ref|YP_001040800.1| - 0.0066 16.8 0.1 0.011 16.0 0.1 1.4 1 0 0 1 1 1 1 Hydin Adenylate kinase-like domain SKI PF01202.22 gi|126465691|ref|YP_001040800.1| - 0.0066 16.6 0.1 0.066 13.3 0.0 2.3 2 1 0 2 2 2 1 Shikimate kinase ABC_tran PF00005.27 gi|126465691|ref|YP_001040800.1| - 0.0078 16.7 0.2 0.014 15.9 0.1 1.4 1 1 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|126465691|ref|YP_001040800.1| - 0.0093 15.7 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|126465691|ref|YP_001040800.1| - 0.01 15.6 0.1 0.026 14.3 0.1 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|126465691|ref|YP_001040800.1| - 0.01 16.1 0.1 0.022 15.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126465691|ref|YP_001040800.1| - 0.015 15.6 0.1 0.03 14.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|126465691|ref|YP_001040800.1| - 0.017 14.8 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|126465691|ref|YP_001040800.1| - 0.029 14.2 0.1 0.068 13.0 0.0 1.7 1 1 0 1 1 1 0 Deoxynucleoside kinase AAA_25 PF13481.6 gi|126465691|ref|YP_001040800.1| - 0.032 13.8 2.7 0.083 12.5 0.3 2.1 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|126465691|ref|YP_001040800.1| - 0.032 14.1 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.20 gi|126465691|ref|YP_001040800.1| - 0.033 14.1 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Viral_helicase1 PF01443.18 gi|126465691|ref|YP_001040800.1| - 0.051 13.3 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|126465691|ref|YP_001040800.1| - 0.07 13.0 0.1 0.07 13.0 0.1 2.3 3 0 0 3 3 3 0 NTPase cobW PF02492.19 gi|126465691|ref|YP_001040800.1| - 0.071 12.7 0.2 0.16 11.6 0.2 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|126465691|ref|YP_001040800.1| - 0.078 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|126465691|ref|YP_001040800.1| - 0.081 12.8 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|126465691|ref|YP_001040800.1| - 0.082 12.1 0.6 0.11 11.6 0.6 1.4 1 1 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|126465691|ref|YP_001040800.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DnaB_C PF03796.15 gi|126465691|ref|YP_001040800.1| - 0.12 11.6 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain TsaE PF02367.17 gi|126465691|ref|YP_001040800.1| - 0.14 12.2 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ADK PF00406.22 gi|126465691|ref|YP_001040800.1| - 0.17 11.9 0.6 1.1 9.4 0.1 2.3 2 1 1 3 3 3 0 Adenylate kinase Sigma54_activat PF00158.26 gi|126465691|ref|YP_001040800.1| - 0.18 11.5 0.0 0.7 9.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain MMR_HSR1 PF01926.23 gi|126465691|ref|YP_001040800.1| - 0.19 11.8 1.1 0.46 10.6 1.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|126465691|ref|YP_001040800.1| - 0.2 11.0 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF87 PF01935.17 gi|126465691|ref|YP_001040800.1| - 0.25 11.4 2.6 3.8 7.5 0.2 2.4 1 1 1 2 2 2 0 Helicase HerA, central domain DUF1152 PF06626.12 gi|126465692|ref|YP_001040801.1| - 9.9e-114 379.5 0.0 1.1e-113 379.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) PAPS_reduct PF01507.19 gi|126465693|ref|YP_001040802.1| - 3.6e-30 105.3 0.0 6.9e-30 104.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|126465693|ref|YP_001040802.1| - 0.019 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family QueC PF06508.13 gi|126465693|ref|YP_001040802.1| - 0.025 14.1 0.0 0.048 13.1 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Ribosomal_S10 PF00338.22 gi|126465693|ref|YP_001040802.1| - 0.061 13.6 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S10p/S20e NAD_synthase PF02540.17 gi|126465693|ref|YP_001040802.1| - 0.14 11.3 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 NAD synthase ALS_ss_C PF10369.9 gi|126465694|ref|YP_001040803.1| - 0.054 13.7 0.2 4.5 7.5 0.0 2.2 1 1 1 2 2 2 0 Small subunit of acetolactate synthase Raf1_N PF18578.1 gi|126465694|ref|YP_001040803.1| - 0.07 13.6 0.2 0.13 12.7 0.2 1.5 2 0 0 2 2 2 0 Rubisco accumulation factor 1 alpha helical domain z-alpha PF02295.17 gi|126465694|ref|YP_001040803.1| - 0.11 12.6 0.3 0.19 11.8 0.3 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Radical_SAM PF04055.21 gi|126465695|ref|YP_001040804.1| - 2.1e-22 80.3 0.0 2.1e-22 80.3 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126465695|ref|YP_001040804.1| - 2.8e-08 34.1 0.3 6e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126465695|ref|YP_001040804.1| - 6.3e-08 32.8 0.8 1.6e-07 31.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-CHC2 PF01807.20 gi|126465695|ref|YP_001040804.1| - 0.044 13.6 0.4 8.3 6.3 0.3 2.5 2 0 0 2 2 2 0 CHC2 zinc finger DUF99 PF01949.16 gi|126465696|ref|YP_001040805.1| - 4.1e-51 173.0 0.0 4.8e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Cdc6_C PF09079.11 gi|126465697|ref|YP_001040806.1| - 2.1e-21 75.7 0.6 2.9e-19 68.8 0.1 3.7 3 1 1 4 4 4 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|126465697|ref|YP_001040806.1| - 3.4e-10 40.6 0.3 1.9e-08 34.9 0.0 2.7 1 1 2 3 3 3 1 AAA ATPase domain AAA PF00004.29 gi|126465697|ref|YP_001040806.1| - 8.7e-10 39.1 0.0 3.1e-09 37.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126465697|ref|YP_001040806.1| - 2.2e-08 34.5 0.0 4.7e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|126465697|ref|YP_001040806.1| - 3.9e-08 32.9 0.2 2.1e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|126465697|ref|YP_001040806.1| - 4.8e-06 26.7 2.6 4.9e-06 26.6 1.0 2.0 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea TIP49 PF06068.13 gi|126465697|ref|YP_001040806.1| - 0.0012 18.2 0.2 0.0048 16.1 0.2 1.8 1 1 0 1 1 1 1 TIP49 P-loop domain DUF815 PF05673.13 gi|126465697|ref|YP_001040806.1| - 0.0015 17.8 0.0 0.0027 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_32 PF13654.6 gi|126465697|ref|YP_001040806.1| - 0.0039 16.0 0.7 1.3 7.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|126465697|ref|YP_001040806.1| - 0.004 16.7 0.3 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|126465697|ref|YP_001040806.1| - 0.0041 17.1 0.3 0.015 15.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|126465697|ref|YP_001040806.1| - 0.0043 16.3 0.0 0.0063 15.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|126465697|ref|YP_001040806.1| - 0.0048 16.6 0.0 0.0092 15.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|126465697|ref|YP_001040806.1| - 0.0087 16.4 0.1 0.026 14.9 0.1 1.8 1 0 0 1 1 1 1 AAA C-terminal domain NACHT PF05729.12 gi|126465697|ref|YP_001040806.1| - 0.012 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|126465697|ref|YP_001040806.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|126465697|ref|YP_001040806.1| - 0.018 15.5 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|126465697|ref|YP_001040806.1| - 0.023 13.9 0.0 0.043 13.0 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain TIP49_C PF17856.1 gi|126465697|ref|YP_001040806.1| - 0.028 14.6 0.4 0.091 12.9 0.1 2.0 2 0 0 2 2 1 0 TIP49 AAA-lid domain IstB_IS21 PF01695.17 gi|126465697|ref|YP_001040806.1| - 0.028 14.1 0.1 1.7 8.3 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|126465697|ref|YP_001040806.1| - 0.031 13.8 1.6 18 4.8 0.0 3.1 2 1 1 3 3 3 0 AAA domain Zeta_toxin PF06414.12 gi|126465697|ref|YP_001040806.1| - 0.043 13.1 0.0 0.085 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Bac_DnaA PF00308.18 gi|126465697|ref|YP_001040806.1| - 0.044 13.6 0.0 4.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein TsaE PF02367.17 gi|126465697|ref|YP_001040806.1| - 0.044 13.8 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DEAD PF00270.29 gi|126465697|ref|YP_001040806.1| - 0.048 13.4 1.1 4.7 6.9 0.2 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|126465697|ref|YP_001040806.1| - 0.075 12.8 1.0 0.91 9.2 0.3 2.7 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|126465697|ref|YP_001040806.1| - 0.078 13.4 0.0 0.2 12.0 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|126465697|ref|YP_001040806.1| - 0.083 12.6 0.1 0.23 11.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain Arf PF00025.21 gi|126465697|ref|YP_001040806.1| - 0.11 12.0 0.2 0.44 10.0 0.1 2.0 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_33 PF13671.6 gi|126465697|ref|YP_001040806.1| - 0.14 12.3 0.1 0.55 10.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain HAD_2 PF13419.6 gi|126465698|ref|YP_001040807.1| - 2.4e-39 135.2 0.0 2.9e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126465698|ref|YP_001040807.1| - 1.3e-16 61.6 0.0 3.1e-16 60.3 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126465698|ref|YP_001040807.1| - 7.6e-09 35.5 0.0 1.5e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|126465698|ref|YP_001040807.1| - 1.1e-08 35.7 0.0 1.5e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|126465698|ref|YP_001040807.1| - 0.00044 20.1 0.0 4.6 6.9 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126465698|ref|YP_001040807.1| - 0.0011 19.1 0.1 0.82 9.8 0.0 2.8 3 0 0 3 3 3 2 Haloacid dehalogenase-like hydrolase MR_MLE_C PF13378.6 gi|126465700|ref|YP_001040809.1| - 1e-36 126.6 0.0 1.3e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|126465700|ref|YP_001040809.1| - 3.9e-09 36.8 0.0 7.1e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BphX PF06139.12 gi|126465700|ref|YP_001040809.1| - 0.12 12.4 0.1 0.36 10.8 0.0 1.8 2 0 0 2 2 2 0 BphX-like Enolase_C PF00113.22 gi|126465700|ref|YP_001040809.1| - 0.14 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Enolase, C-terminal TIM barrel domain RNA_pol_Rpb5_C PF01191.19 gi|126465701|ref|YP_001040810.1| - 1.9e-32 110.9 0.1 2.2e-32 110.7 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|126465702|ref|YP_001040811.1| - 1.4e-134 449.0 0.1 2e-134 448.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|126465702|ref|YP_001040811.1| - 7.4e-44 149.7 0.0 1.2e-43 149.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|126465702|ref|YP_001040811.1| - 1.3e-30 105.6 0.2 2.4e-30 104.7 0.2 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_2 PF04561.14 gi|126465702|ref|YP_001040811.1| - 9.7e-30 103.6 0.6 3.8e-29 101.7 0.6 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|126465702|ref|YP_001040811.1| - 2e-28 98.4 0.0 4.8e-28 97.1 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|126465702|ref|YP_001040811.1| - 1.1e-22 80.0 1.3 3.3e-22 78.5 1.3 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|126465702|ref|YP_001040811.1| - 3.3e-10 40.4 0.0 9e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|126465702|ref|YP_001040811.1| - 0.038 14.2 0.4 0.38 11.1 0.1 2.8 3 0 0 3 3 3 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 gi|126465703|ref|YP_001040812.1| - 7.7e-98 327.7 0.0 1e-97 327.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|126465703|ref|YP_001040812.1| - 2.6e-76 255.4 0.0 4.3e-76 254.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|126465703|ref|YP_001040812.1| - 2.5e-37 128.3 0.0 8.1e-37 126.6 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|126465703|ref|YP_001040812.1| - 2.8e-28 98.0 0.0 5e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|126465703|ref|YP_001040812.1| - 9.3e-26 90.8 0.0 1.5e-25 90.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.10 gi|126465703|ref|YP_001040812.1| - 0.0097 16.0 1.0 2.3 8.4 0.0 3.2 3 0 0 3 3 3 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|126465703|ref|YP_001040812.1| - 0.43 10.1 6.0 0.75 9.3 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|126465703|ref|YP_001040812.1| - 1.8 9.3 7.8 3.6 8.3 0.3 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|126465703|ref|YP_001040812.1| - 4.7 7.3 10.4 1.2 9.2 0.4 2.8 3 0 0 3 3 3 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|126465703|ref|YP_001040812.1| - 5.5 7.0 7.5 8.7 6.4 0.3 3.4 3 0 0 3 3 3 0 Nudix N-terminal UPF0547 PF10571.9 gi|126465703|ref|YP_001040812.1| - 9.2 6.5 7.0 1.8 8.7 1.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_pol_Rpb1_5 PF04998.17 gi|126465704|ref|YP_001040813.1| - 1.1e-54 185.7 3.3 2.6e-53 181.2 3.3 2.2 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|126465705|ref|YP_001040814.1| - 8.1e-22 76.8 0.0 9.9e-22 76.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_5 PF13184.6 gi|126465706|ref|YP_001040815.1| - 3.5e-15 55.8 2.3 3.7e-14 52.5 0.1 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 gi|126465706|ref|YP_001040815.1| - 1.6e-13 50.2 2.8 2.2e-08 33.8 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|126465706|ref|YP_001040815.1| - 1e-06 28.5 0.2 0.0045 16.8 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|126465706|ref|YP_001040815.1| - 0.0014 18.4 0.2 0.31 10.9 0.0 2.5 2 1 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.25 gi|126465707|ref|YP_001040816.1| - 1.9e-47 159.6 0.4 1.9e-47 159.6 0.4 1.3 2 0 0 2 2 2 1 Ribosomal protein S12/S23 DNase-RNase PF02577.14 gi|126465708|ref|YP_001040817.1| - 9.3e-07 28.5 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Bifunctional nuclease DUF3420 PF11900.8 gi|126465708|ref|YP_001040817.1| - 0.16 12.1 1.5 5.4 7.2 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) Ribosomal_S7 PF00177.21 gi|126465709|ref|YP_001040818.1| - 1.2e-42 145.1 0.1 1.4e-42 144.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|126465710|ref|YP_001040819.1| - 6.2e-53 179.2 0.0 8.9e-53 178.7 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|126465710|ref|YP_001040819.1| - 1.6e-37 128.3 0.0 9.7e-37 125.7 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|126465710|ref|YP_001040819.1| - 2.7e-15 56.5 1.8 6.5e-15 55.3 1.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|126465710|ref|YP_001040819.1| - 1.9e-05 24.5 0.6 5.4e-05 23.0 0.6 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|126465710|ref|YP_001040819.1| - 3.9e-05 23.7 0.0 0.0003 20.8 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|126465710|ref|YP_001040819.1| - 0.014 15.5 0.0 1.8 8.6 0.0 2.5 1 1 0 1 1 1 0 Dynamin family Septin PF00735.18 gi|126465710|ref|YP_001040819.1| - 0.098 11.9 0.0 0.28 10.4 0.0 1.6 1 1 0 1 1 1 0 Septin Ribosomal_S10 PF00338.22 gi|126465711|ref|YP_001040820.1| - 2.4e-26 91.8 0.2 2.7e-26 91.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|126465711|ref|YP_001040820.1| - 0.0081 17.0 0.1 0.016 16.0 0.0 1.5 2 0 0 2 2 2 1 Primosomal protein N C-terminal domain Ribosomal_S13 PF00416.22 gi|126465712|ref|YP_001040821.1| - 1.7e-45 154.6 0.1 1.9e-45 154.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|126465712|ref|YP_001040821.1| - 0.19 10.4 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|126465713|ref|YP_001040822.1| - 4.4e-15 55.1 0.1 1.3e-14 53.6 0.1 1.8 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|126465713|ref|YP_001040822.1| - 4.7e-06 27.4 0.6 1.6e-05 25.7 0.5 1.9 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|126465714|ref|YP_001040823.1| - 3.1e-48 162.7 1.9 3.9e-48 162.4 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.26 gi|126465715|ref|YP_001040824.1| - 4.8e-29 101.0 0.0 1.5e-28 99.4 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|126465715|ref|YP_001040824.1| - 3.2e-16 58.5 0.0 4e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.7 gi|126465715|ref|YP_001040824.1| - 4.5e-09 36.8 1.9 0.00097 19.7 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126465715|ref|YP_001040824.1| - 4e-08 32.8 12.7 7e-05 22.5 1.4 3.3 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126465715|ref|YP_001040824.1| - 1.7e-07 32.1 4.7 0.0076 17.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|126465715|ref|YP_001040824.1| - 2.1e-06 27.8 8.5 4.1e-06 26.9 8.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465715|ref|YP_001040824.1| - 1e-05 25.4 13.5 0.0012 18.8 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126465715|ref|YP_001040824.1| - 1e-05 25.3 8.8 0.0026 17.7 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465715|ref|YP_001040824.1| - 2.2e-05 24.5 9.9 0.0001 22.3 10.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126465715|ref|YP_001040824.1| - 0.00045 20.6 4.3 0.33 11.4 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|126465715|ref|YP_001040824.1| - 0.00068 19.7 10.2 0.0013 18.8 10.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126465715|ref|YP_001040824.1| - 0.01 16.3 10.8 1.7 9.2 10.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126465715|ref|YP_001040824.1| - 0.028 15.3 11.8 1 10.5 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126465715|ref|YP_001040824.1| - 0.073 13.6 11.2 0.83 10.3 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126465715|ref|YP_001040824.1| - 0.86 9.8 8.7 3.9 7.7 1.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Ribosomal_L18 PF17135.4 gi|126465716|ref|YP_001040825.1| - 8.5e-12 44.9 0.2 9.1e-12 44.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|126465716|ref|YP_001040825.1| - 4.2e-09 37.2 0.6 6.1e-09 36.6 0.6 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HU-CCDC81_euk_1 PF14908.6 gi|126465716|ref|YP_001040825.1| - 0.044 13.9 0.0 0.049 13.8 0.0 1.3 1 1 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 Ribosomal_L13 PF00572.18 gi|126465717|ref|YP_001040826.1| - 2.3e-12 47.3 3.0 3.2e-10 40.3 3.0 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|126465718|ref|YP_001040827.1| - 1.5e-33 115.9 0.0 1.7e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|126465719|ref|YP_001040828.1| - 8.6e-31 106.0 0.2 9.4e-31 105.9 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|126465719|ref|YP_001040828.1| - 0.0052 17.0 0.1 0.0086 16.3 0.1 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.20 gi|126465720|ref|YP_001040829.1| - 1.1e-24 86.9 0.0 6.8e-15 54.9 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Memo PF01875.17 gi|126465721|ref|YP_001040830.1| - 2.6e-80 269.4 0.0 3e-80 269.3 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein FMN_dh PF01070.18 gi|126465722|ref|YP_001040831.1| - 4.5e-18 65.4 0.0 9.5e-17 61.0 0.0 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase DUF2118 PF09891.9 gi|126465723|ref|YP_001040832.1| - 2.8e-26 92.3 5.1 3.3e-26 92.0 5.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) RsgI_N PF12791.7 gi|126465723|ref|YP_001040832.1| - 0.063 13.2 0.3 0.85 9.6 0.0 2.7 2 0 0 2 2 2 0 Anti-sigma factor N-terminus tRNA-synt_1c PF00749.21 gi|126465724|ref|YP_001040833.1| - 8e-72 241.8 0.0 1.1e-71 241.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|126465724|ref|YP_001040833.1| - 2.3e-23 83.0 0.0 3.9e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Ribosomal_L7Ae PF01248.26 gi|126465725|ref|YP_001040834.1| - 7.4e-33 112.2 0.5 9.2e-33 111.9 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|126465725|ref|YP_001040834.1| - 5.8e-05 22.9 0.1 8.5e-05 22.4 0.1 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|126465725|ref|YP_001040834.1| - 0.014 15.4 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 FAM25 PF15825.5 gi|126465725|ref|YP_001040834.1| - 0.017 15.4 4.2 0.051 13.9 1.1 2.2 2 0 0 2 2 2 0 FAM25 family YtxH PF12732.7 gi|126465725|ref|YP_001040834.1| - 0.46 11.1 4.2 3.3 8.3 0.2 2.1 2 0 0 2 2 2 0 YtxH-like protein Ribosomal_S28e PF01200.18 gi|126465726|ref|YP_001040835.1| - 4.7e-31 106.6 3.7 6e-31 106.2 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|126465727|ref|YP_001040836.1| - 1.4e-22 79.7 0.7 1.5e-22 79.6 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|126465727|ref|YP_001040836.1| - 1.8e-06 27.7 0.7 2.6e-06 27.2 0.7 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|126465727|ref|YP_001040836.1| - 0.0031 17.0 0.5 0.0047 16.4 0.5 1.3 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|126465727|ref|YP_001040836.1| - 0.0083 16.2 0.1 0.013 15.6 0.1 1.2 1 0 0 1 1 1 1 YHS domain zf-C4_ClpX PF06689.13 gi|126465727|ref|YP_001040836.1| - 0.044 13.7 1.2 0.047 13.6 0.0 1.7 2 0 0 2 2 2 0 ClpX C4-type zinc finger VATC PF18716.1 gi|126465727|ref|YP_001040836.1| - 0.051 13.4 3.6 0.12 12.2 3.6 1.6 1 1 0 1 1 1 0 Vms1-associating treble clef domain DUF2116 PF09889.9 gi|126465727|ref|YP_001040836.1| - 0.077 13.0 1.1 1 9.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NosL PF05573.12 gi|126465727|ref|YP_001040836.1| - 0.16 12.3 0.0 0.18 12.1 0.0 1.1 1 0 0 1 1 1 0 NosL NDK PF00334.19 gi|126465728|ref|YP_001040837.1| - 2.7e-59 199.0 0.0 3.1e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU_D4 PF14578.6 gi|126465729|ref|YP_001040838.1| - 1.7e-38 130.4 1.4 1.7e-38 130.4 1.4 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|126465729|ref|YP_001040838.1| - 3.1e-32 111.7 0.0 1.2e-31 109.8 0.0 1.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|126465729|ref|YP_001040838.1| - 2.6e-25 88.5 1.4 7.2e-25 87.1 1.4 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|126465729|ref|YP_001040838.1| - 4e-12 46.4 0.2 4e-12 46.4 0.2 3.2 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|126465729|ref|YP_001040838.1| - 4.5e-07 29.9 0.1 2.4e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|126465729|ref|YP_001040838.1| - 3.3e-05 24.1 0.0 0.0006 20.0 0.0 2.8 3 0 0 3 3 3 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|126465729|ref|YP_001040838.1| - 0.0029 17.7 0.1 0.14 12.2 0.0 3.1 3 0 0 3 3 3 1 Dynamin family Ras PF00071.22 gi|126465729|ref|YP_001040838.1| - 0.017 14.7 0.0 0.14 11.8 0.0 2.5 1 1 0 1 1 1 0 Ras family Arf PF00025.21 gi|126465729|ref|YP_001040838.1| - 0.024 14.1 0.0 6.6 6.2 0.0 3.3 3 1 0 3 3 3 0 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|126465729|ref|YP_001040838.1| - 0.058 13.3 0.2 2 8.3 0.1 3.1 3 1 0 3 3 3 0 RsgA GTPase AAA_22 PF13401.6 gi|126465729|ref|YP_001040838.1| - 0.093 13.0 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|126465729|ref|YP_001040838.1| - 0.13 12.7 0.0 1 9.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Ribosomal_S6e PF01092.19 gi|126465730|ref|YP_001040839.1| - 9.1e-33 112.9 1.8 1.6e-32 112.1 0.1 2.1 3 0 0 3 3 3 1 Ribosomal protein S6e GTP_EFTU PF00009.27 gi|126465731|ref|YP_001040840.1| - 5.3e-29 101.2 0.2 2.5e-28 99.0 0.2 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|126465731|ref|YP_001040840.1| - 1.2e-26 92.8 1.6 2.3e-26 91.8 1.6 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|126465731|ref|YP_001040840.1| - 7.3e-08 32.7 0.4 3.1e-06 27.5 0.8 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|126465731|ref|YP_001040840.1| - 8.7e-07 29.0 0.2 3.8e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|126465731|ref|YP_001040840.1| - 5.3e-05 23.3 0.0 0.00012 22.1 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|126465731|ref|YP_001040840.1| - 0.0004 20.1 0.1 0.73 9.6 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|126465731|ref|YP_001040840.1| - 0.0083 16.1 0.0 0.017 15.1 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|126465731|ref|YP_001040840.1| - 0.019 14.5 0.8 4.6 6.7 0.1 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|126465732|ref|YP_001040841.1| - 1.6e-27 96.1 0.6 1.9e-27 95.9 0.6 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|126465732|ref|YP_001040841.1| - 6.6e-07 29.7 0.0 9e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN PF01850.21 gi|126465732|ref|YP_001040841.1| - 5.4e-06 26.9 0.4 1.1e-05 26.0 0.4 1.4 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|126465732|ref|YP_001040841.1| - 0.0016 18.7 0.5 0.0088 16.3 0.5 1.9 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|126465732|ref|YP_001040841.1| - 0.025 14.3 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) RNase_Zc3h12a PF11977.8 gi|126465732|ref|YP_001040841.1| - 0.028 14.2 0.1 0.054 13.3 0.0 1.5 1 1 1 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain DUF4411 PF14367.6 gi|126465732|ref|YP_001040841.1| - 0.047 13.6 0.1 0.084 12.8 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) PHAT PF09246.10 gi|126465732|ref|YP_001040841.1| - 0.051 13.4 0.1 0.066 13.1 0.1 1.3 1 0 0 1 1 1 0 PHAT SHS2_Rpb7-N PF03876.17 gi|126465733|ref|YP_001040842.1| - 3.7e-18 65.7 0.0 6.5e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|126465733|ref|YP_001040842.1| - 2.7e-08 34.0 0.0 3.1e-06 27.4 0.0 2.5 3 0 0 3 3 3 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|126465733|ref|YP_001040842.1| - 0.00063 20.0 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|126465734|ref|YP_001040843.1| - 3.7e-16 59.0 0.1 4.4e-16 58.8 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.6 gi|126465734|ref|YP_001040843.1| - 0.00013 21.5 1.9 0.00019 21.1 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|126465734|ref|YP_001040843.1| - 0.0002 20.6 1.6 0.00028 20.2 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|126465734|ref|YP_001040843.1| - 0.0013 18.7 1.8 0.0017 18.3 1.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C4H2 PF10146.9 gi|126465734|ref|YP_001040843.1| - 0.0048 17.2 0.4 0.0062 16.9 0.4 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein UPF0547 PF10571.9 gi|126465734|ref|YP_001040843.1| - 0.01 15.9 2.1 0.015 15.3 2.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|126465734|ref|YP_001040843.1| - 0.012 16.3 1.8 0.016 16.0 1.8 1.1 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|126465734|ref|YP_001040843.1| - 0.018 15.1 0.5 0.023 14.7 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|126465734|ref|YP_001040843.1| - 0.036 13.6 2.6 0.037 13.5 0.4 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|126465734|ref|YP_001040843.1| - 0.039 12.7 0.2 0.04 12.7 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|126465734|ref|YP_001040843.1| - 0.093 12.9 2.6 0.37 10.9 2.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain GNAT_acetyltran PF12746.7 gi|126465734|ref|YP_001040843.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Prim_Zn_Ribbon PF08273.12 gi|126465734|ref|YP_001040843.1| - 0.17 12.2 0.7 0.17 12.2 0.7 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF359 PF04019.12 gi|126465735|ref|YP_001040844.1| - 2.8e-15 56.0 0.2 4.3e-15 55.5 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Ribosomal_S24e PF01282.19 gi|126465736|ref|YP_001040845.1| - 5.5e-23 80.7 0.2 7.4e-23 80.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e RNA_helicase PF00910.22 gi|126465736|ref|YP_001040845.1| - 0.0057 17.0 0.0 0.0085 16.5 0.0 1.3 1 0 0 1 1 1 1 RNA helicase Ribosomal_S27 PF01599.19 gi|126465737|ref|YP_001040846.1| - 8.3e-13 48.3 2.8 9.6e-13 48.1 2.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.16 gi|126465737|ref|YP_001040846.1| - 0.0013 18.6 0.3 0.0025 17.6 0.3 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|126465737|ref|YP_001040846.1| - 0.0038 17.1 4.7 0.019 14.9 4.7 1.9 1 1 0 1 1 1 1 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|126465737|ref|YP_001040846.1| - 0.0084 16.0 0.6 0.0098 15.8 0.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|126465737|ref|YP_001040846.1| - 0.014 15.1 2.7 2.8 7.7 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|126465737|ref|YP_001040846.1| - 0.017 15.1 3.6 0.022 14.7 3.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain PriA_CRR PF18319.1 gi|126465737|ref|YP_001040846.1| - 0.022 14.7 1.3 0.087 12.8 1.3 2.0 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Ribosomal_L37ae PF01780.19 gi|126465737|ref|YP_001040846.1| - 0.023 14.8 1.4 0.028 14.5 1.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family TF_Zn_Ribbon PF08271.12 gi|126465737|ref|YP_001040846.1| - 0.023 14.2 4.0 2.8 7.5 0.3 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|126465737|ref|YP_001040846.1| - 0.028 13.8 8.0 0.035 13.5 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|126465737|ref|YP_001040846.1| - 0.036 14.2 0.7 0.041 14.0 0.7 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF35_N PF12172.8 gi|126465737|ref|YP_001040846.1| - 0.044 13.7 2.0 1.8 8.5 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.10 gi|126465737|ref|YP_001040846.1| - 0.061 13.1 3.5 0.78 9.5 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|126465737|ref|YP_001040846.1| - 0.061 13.7 3.2 0.079 13.4 3.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|126465737|ref|YP_001040846.1| - 0.07 12.9 7.9 0.07 12.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|126465737|ref|YP_001040846.1| - 0.1 12.6 2.1 1.1 9.2 0.3 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 zf_C2H2_10 PF18414.1 gi|126465737|ref|YP_001040846.1| - 0.16 11.5 4.7 4.3 7.0 0.1 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1451 PF07295.11 gi|126465737|ref|YP_001040846.1| - 0.18 11.8 0.8 0.18 11.8 0.8 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf_UBZ PF18439.1 gi|126465737|ref|YP_001040846.1| - 0.35 10.5 2.7 0.66 9.6 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|126465737|ref|YP_001040846.1| - 0.5 10.5 6.9 0.35 11.0 1.1 2.2 1 1 0 2 2 2 0 Zinc ribbon domain YhfH PF14149.6 gi|126465737|ref|YP_001040846.1| - 4.2 7.4 9.4 0.97 9.5 2.0 2.1 1 1 1 2 2 2 0 YhfH-like protein ADK_lid PF05191.14 gi|126465737|ref|YP_001040846.1| - 5.7 7.0 8.8 9.2 6.3 1.1 2.3 2 1 1 3 3 3 0 Adenylate kinase, active site lid Peptidase_M22 PF00814.25 gi|126465738|ref|YP_001040847.1| - 2.9e-73 246.9 0.0 3.6e-73 246.6 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family RIO1 PF01163.22 gi|126465739|ref|YP_001040848.1| - 6.1e-14 52.0 0.1 7.7e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|126465739|ref|YP_001040848.1| - 4.1e-11 42.7 0.2 5.3e-11 42.4 0.2 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|126465739|ref|YP_001040848.1| - 3.2e-08 33.2 0.0 4e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|126465739|ref|YP_001040848.1| - 7.9e-08 31.9 0.1 2.9e-07 30.0 0.1 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|126465739|ref|YP_001040848.1| - 6.9e-07 29.4 0.0 0.00016 21.6 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Haspin_kinase PF12330.8 gi|126465739|ref|YP_001040848.1| - 0.19 10.6 0.1 0.33 9.9 0.1 1.3 1 0 0 1 1 1 0 Haspin like kinase domain Ham1p_like PF01725.16 gi|126465740|ref|YP_001040849.1| - 1.5e-44 152.2 0.0 1.7e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_S13_N PF08069.12 gi|126465741|ref|YP_001040850.1| - 5e-24 84.1 0.1 1e-23 83.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|126465741|ref|YP_001040850.1| - 4.4e-17 62.0 0.2 7.2e-17 61.4 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF2170 PF09938.9 gi|126465742|ref|YP_001040851.1| - 0.045 13.5 1.0 0.1 12.3 1.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2170) Phage_TAC_8 PF10666.9 gi|126465743|ref|YP_001040852.1| - 0.022 15.0 0.3 0.028 14.7 0.3 1.1 1 0 0 1 1 1 0 Phage tail assembly chaperone protein Gp14 ()A118 RRP36 PF06102.12 gi|126465743|ref|YP_001040852.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 rRNA biogenesis protein RRP36 Pcc1 PF09341.10 gi|126465743|ref|YP_001040852.1| - 0.15 12.3 0.0 0.17 12.0 0.0 1.3 1 1 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.18 gi|126465744|ref|YP_001040853.1| - 3e-68 229.4 2.5 3.4e-68 229.2 2.5 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family THUMP PF02926.17 gi|126465745|ref|YP_001040854.1| - 9.2e-21 74.5 3.0 1.1e-20 74.2 3.0 1.1 1 0 0 1 1 1 1 THUMP domain Tropomodulin PF03250.14 gi|126465745|ref|YP_001040854.1| - 0.16 12.0 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Tropomodulin SAM_LFY PF01698.16 gi|126465746|ref|YP_001040855.1| - 0.12 12.4 0.8 1.4 8.9 0.8 2.2 1 1 0 1 1 1 0 Floricaula / Leafy protein SAM domain MinC_N PF05209.13 gi|126465746|ref|YP_001040855.1| - 0.12 12.3 0.0 0.12 12.3 0.0 1.0 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|126465747|ref|YP_001040856.1| - 1.5e-14 53.7 0.1 3.7e-14 52.4 0.1 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|126465747|ref|YP_001040856.1| - 1.2e-07 31.9 0.7 1.2e-07 31.9 0.7 2.1 2 1 1 3 3 3 1 Probable transposase RPA_interact_C PF14768.6 gi|126465747|ref|YP_001040856.1| - 0.019 15.5 1.0 0.086 13.4 0.5 2.1 2 0 0 2 2 2 0 Replication protein A interacting C-terminal YhfH PF14149.6 gi|126465747|ref|YP_001040856.1| - 0.13 12.3 1.2 6.7 6.8 0.3 2.4 2 0 0 2 2 2 0 YhfH-like protein DZR PF12773.7 gi|126465747|ref|YP_001040856.1| - 0.14 12.2 0.8 0.29 11.2 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.9 gi|126465747|ref|YP_001040856.1| - 0.16 12.1 0.1 0.29 11.3 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) TF_Zn_Ribbon PF08271.12 gi|126465747|ref|YP_001040856.1| - 0.32 10.5 4.7 0.078 12.5 0.8 2.0 2 1 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|126465747|ref|YP_001040856.1| - 1.5 8.5 7.7 5.6 6.7 7.7 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|126465747|ref|YP_001040856.1| - 1.8 8.1 5.8 9.9 5.7 5.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain NTP_transferase PF00483.23 gi|126465748|ref|YP_001040857.1| - 3.4e-36 125.1 0.0 4.5e-36 124.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|126465748|ref|YP_001040857.1| - 3.1e-17 61.5 17.2 1.5e-06 27.7 0.5 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|126465748|ref|YP_001040857.1| - 5.1e-12 46.4 0.0 6.8e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|126465748|ref|YP_001040857.1| - 3.2e-07 30.3 0.0 4.8e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|126465748|ref|YP_001040857.1| - 0.00073 19.2 0.2 0.00073 19.2 0.2 4.0 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|126465748|ref|YP_001040857.1| - 0.0014 16.9 0.7 0.0021 16.3 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) DUF2095 PF09868.9 gi|126465749|ref|YP_001040858.1| - 3.2e-19 69.2 0.4 7.4e-18 64.8 0.4 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) L27 PF02828.16 gi|126465749|ref|YP_001040858.1| - 0.00074 19.2 0.2 0.0014 18.4 0.2 1.4 1 0 0 1 1 1 1 L27 domain ORF6C PF10552.9 gi|126465749|ref|YP_001040858.1| - 0.0082 16.2 1.5 0.0083 16.2 0.3 1.6 2 0 0 2 2 2 1 ORF6C domain DED PF01335.21 gi|126465749|ref|YP_001040858.1| - 0.023 15.0 0.2 0.039 14.3 0.2 1.5 1 1 0 1 1 1 0 Death effector domain Med28 PF11594.8 gi|126465749|ref|YP_001040858.1| - 0.081 13.0 0.1 0.23 11.5 0.1 1.7 1 1 1 2 2 2 0 Mediator complex subunit 28 MMR_HSR1_C PF08438.10 gi|126465750|ref|YP_001040859.1| - 5.1e-38 130.1 0.1 8.5e-38 129.4 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|126465750|ref|YP_001040859.1| - 7.8e-21 74.3 0.0 4e-20 72.0 0.0 2.2 1 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|126465750|ref|YP_001040859.1| - 1.5e-14 53.8 0.0 4.3e-14 52.3 0.0 1.8 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|126465750|ref|YP_001040859.1| - 2.9e-05 23.6 3.0 6e-05 22.6 0.1 3.0 5 0 0 5 5 5 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|126465750|ref|YP_001040859.1| - 9.8e-05 22.5 0.1 0.0058 16.8 0.0 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|126465750|ref|YP_001040859.1| - 0.00088 18.9 0.9 1.1 8.7 0.0 3.3 4 0 0 4 4 4 2 Elongation factor Tu GTP binding domain AAA_23 PF13476.6 gi|126465750|ref|YP_001040859.1| - 0.023 15.2 0.6 0.053 14.0 0.0 1.8 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|126465750|ref|YP_001040859.1| - 0.05 13.5 0.1 11 5.9 0.0 2.9 3 0 0 3 3 3 0 RsgA GTPase S_layer_N PF05123.12 gi|126465750|ref|YP_001040859.1| - 0.059 13.2 0.1 0.11 12.3 0.0 1.5 2 0 0 2 2 2 0 S-layer like family, N-terminal region MMR_HSR1_Xtn PF16897.5 gi|126465750|ref|YP_001040859.1| - 0.064 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain ABC_tran PF00005.27 gi|126465750|ref|YP_001040859.1| - 0.094 13.2 0.1 0.33 11.4 0.0 1.8 2 0 0 2 2 2 0 ABC transporter T4_gp9_10 PF07880.11 gi|126465750|ref|YP_001040859.1| - 0.13 11.8 0.4 1.3 8.5 0.0 2.4 3 0 0 3 3 3 0 Bacteriophage T4 gp9/10-like protein SRPRB PF09439.10 gi|126465750|ref|YP_001040859.1| - 0.15 11.5 0.0 22 4.4 0.0 2.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_21 PF13304.6 gi|126465750|ref|YP_001040859.1| - 0.17 11.7 0.4 0.29 10.9 0.4 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|126465750|ref|YP_001040859.1| - 0.18 11.5 0.0 0.38 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ribosomal_L15e PF00827.17 gi|126465751|ref|YP_001040860.1| - 8.5e-85 283.3 8.1 1.1e-84 283.0 8.1 1.2 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|126465752|ref|YP_001040861.1| - 8.1e-36 122.9 1.4 1e-35 122.5 1.4 1.1 1 0 0 1 1 1 1 RNA binding Thioredoxin_6 PF13848.6 gi|126465752|ref|YP_001040861.1| - 0.053 13.4 0.1 0.095 12.6 0.1 1.4 1 1 1 2 2 2 0 Thioredoxin-like domain RNase_P_p30 PF01876.16 gi|126465753|ref|YP_001040862.1| - 5.6e-11 42.3 1.4 6.9e-11 42.0 1.4 1.1 1 0 0 1 1 1 1 RNase P subunit p30 DOT1 PF08123.13 gi|126465753|ref|YP_001040862.1| - 0.024 14.2 0.2 0.032 13.8 0.2 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 RNase_P_Rpp14 PF01900.19 gi|126465754|ref|YP_001040863.1| - 1.6e-15 57.2 0.1 2.4e-15 56.6 0.1 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|126465755|ref|YP_001040864.1| - 1.7e-57 194.0 0.6 2.1e-57 193.7 0.6 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|126465755|ref|YP_001040864.1| - 2.2e-14 52.8 0.6 1.1e-13 50.6 0.3 2.3 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|126465756|ref|YP_001040865.1| - 6.6e-22 77.4 0.1 1.1e-21 76.7 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|126465756|ref|YP_001040865.1| - 1.4e-20 73.4 0.7 2.4e-20 72.7 0.7 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|126465756|ref|YP_001040865.1| - 0.001 19.1 0.0 0.0025 17.8 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF2746 PF10874.8 gi|126465756|ref|YP_001040865.1| - 0.0054 17.1 0.2 0.14 12.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2746) DUF1949 PF09186.11 gi|126465756|ref|YP_001040865.1| - 0.044 13.6 0.0 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) KH_1 PF00013.29 gi|126465757|ref|YP_001040866.1| - 3.9e-08 33.0 0.9 1.1e-07 31.6 0.4 2.1 2 1 0 2 2 2 1 KH domain KH_6 PF15985.5 gi|126465757|ref|YP_001040866.1| - 1e-07 32.2 0.2 1.8e-07 31.4 0.2 1.4 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|126465757|ref|YP_001040866.1| - 2.6e-05 24.0 0.3 6.1e-05 22.8 0.3 1.6 1 0 0 1 1 1 1 KH domain RNase_PH PF01138.21 gi|126465758|ref|YP_001040867.1| - 1.6e-35 122.5 0.0 2.1e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|126465758|ref|YP_001040867.1| - 2.4e-12 46.7 0.2 5e-12 45.7 0.2 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|126465759|ref|YP_001040868.1| - 1.6e-24 86.9 0.0 9.2e-24 84.4 0.0 1.9 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|126465759|ref|YP_001040868.1| - 2.3e-12 46.8 1.2 2.3e-12 46.8 1.2 2.0 3 0 0 3 3 3 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|126465760|ref|YP_001040869.1| - 1.9e-33 114.4 4.2 2.1e-33 114.3 4.2 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|126465760|ref|YP_001040869.1| - 4.1e-05 23.5 1.8 6.2e-05 22.9 1.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|126465760|ref|YP_001040869.1| - 0.0002 21.2 0.4 0.00026 20.8 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|126465760|ref|YP_001040869.1| - 0.0017 17.8 0.1 0.0023 17.4 0.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|126465760|ref|YP_001040869.1| - 0.0021 18.4 0.6 0.0033 17.8 0.6 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|126465760|ref|YP_001040869.1| - 0.0074 16.9 1.0 0.3 11.8 0.3 2.4 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Elf1 PF05129.13 gi|126465760|ref|YP_001040869.1| - 0.025 14.6 0.4 0.043 13.9 0.4 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RRN7 PF11781.8 gi|126465760|ref|YP_001040869.1| - 0.041 13.6 1.7 0.086 12.5 1.7 1.6 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF4379 PF14311.6 gi|126465760|ref|YP_001040869.1| - 0.1 13.0 2.7 0.46 10.9 0.6 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-Di19 PF05605.12 gi|126465760|ref|YP_001040869.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.6 gi|126465760|ref|YP_001040869.1| - 0.12 12.4 1.1 0.35 10.9 0.2 1.9 1 1 1 2 2 2 0 CpXC protein Rep_fac-A_C PF08646.10 gi|126465760|ref|YP_001040869.1| - 0.15 11.8 0.2 0.18 11.5 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Prim_Zn_Ribbon PF08273.12 gi|126465760|ref|YP_001040869.1| - 0.45 10.8 8.0 2 8.8 8.0 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-H2C2_2 PF13465.6 gi|126465760|ref|YP_001040869.1| - 2.2 8.8 6.0 0.93 10.0 1.1 2.1 1 1 1 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.6 gi|126465760|ref|YP_001040869.1| - 2.3 7.8 6.5 2.3 7.7 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|126465760|ref|YP_001040869.1| - 2.4 8.0 10.2 6 6.7 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|126465760|ref|YP_001040869.1| - 8.9 6.3 7.6 12 5.9 2.3 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Pcc1 PF09341.10 gi|126465762|ref|YP_001040871.1| - 1.9e-05 24.7 0.0 2.3e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|126465763|ref|YP_001040872.1| - 2.7e-20 72.3 14.0 3.1e-20 72.1 14.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit TPR_MLP1_2 PF07926.12 gi|126465763|ref|YP_001040872.1| - 0.00045 20.3 4.9 0.019 15.0 0.8 2.1 2 0 0 2 2 2 1 TPR/MLP1/MLP2-like protein DASH_Dad3 PF08656.10 gi|126465763|ref|YP_001040872.1| - 0.001 19.1 1.9 0.001 19.1 1.9 2.5 1 1 1 2 2 2 1 DASH complex subunit Dad3 LcrG PF07216.12 gi|126465763|ref|YP_001040872.1| - 0.0056 16.6 1.1 0.35 10.8 0.2 2.2 2 0 0 2 2 2 1 LcrG protein Prefoldin PF02996.17 gi|126465763|ref|YP_001040872.1| - 0.0065 16.4 10.6 0.22 11.4 0.2 2.3 2 1 0 2 2 2 2 Prefoldin subunit PCRF PF03462.18 gi|126465763|ref|YP_001040872.1| - 0.014 15.2 3.5 0.022 14.6 3.5 1.3 1 0 0 1 1 1 0 PCRF domain FlaC_arch PF05377.11 gi|126465763|ref|YP_001040872.1| - 0.016 15.6 6.7 0.2 12.1 2.6 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) FliD_C PF07195.12 gi|126465763|ref|YP_001040872.1| - 0.04 13.4 1.8 0.066 12.6 1.9 1.4 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TMF_TATA_bd PF12325.8 gi|126465763|ref|YP_001040872.1| - 0.047 13.9 9.8 2.1 8.6 2.9 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Vps8 PF12816.7 gi|126465763|ref|YP_001040872.1| - 0.052 13.1 0.6 0.067 12.7 0.5 1.3 1 1 0 1 1 1 0 Golgi CORVET complex core vacuolar protein 8 Prefoldin_3 PF13758.6 gi|126465763|ref|YP_001040872.1| - 0.065 13.3 6.9 0.12 12.4 6.9 1.5 1 1 0 1 1 1 0 Prefoldin subunit Tektin PF03148.14 gi|126465763|ref|YP_001040872.1| - 0.072 11.8 9.2 0.62 8.7 1.8 2.0 2 0 0 2 2 2 0 Tektin family APG6_N PF17675.1 gi|126465763|ref|YP_001040872.1| - 0.11 13.1 14.7 0.87 10.1 3.6 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region FapA PF03961.13 gi|126465763|ref|YP_001040872.1| - 0.11 11.1 9.6 1.3 7.6 9.6 1.9 1 1 0 1 1 1 0 Flagellar Assembly Protein A ZapB PF06005.12 gi|126465763|ref|YP_001040872.1| - 0.13 12.8 12.8 1.2 9.6 1.2 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF4094 PF13334.6 gi|126465763|ref|YP_001040872.1| - 0.2 12.1 6.0 0.28 11.6 2.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) DUF3782 PF12644.7 gi|126465763|ref|YP_001040872.1| - 0.21 11.7 2.7 0.49 10.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) DUF16 PF01519.16 gi|126465763|ref|YP_001040872.1| - 0.25 11.9 8.7 2.9 8.4 4.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|126465763|ref|YP_001040872.1| - 0.3 11.4 11.5 4.8 7.6 2.8 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cortex-I_coil PF09304.10 gi|126465763|ref|YP_001040872.1| - 0.33 11.2 11.6 2.5 8.3 3.3 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil CLZ PF16526.5 gi|126465763|ref|YP_001040872.1| - 0.38 11.2 9.3 0.21 12.0 1.1 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels TMF_DNA_bd PF12329.8 gi|126465763|ref|YP_001040872.1| - 0.38 10.8 12.6 1.5 8.9 7.6 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CENP-F_leu_zip PF10473.9 gi|126465763|ref|YP_001040872.1| - 0.56 10.2 11.6 1.1 9.3 6.2 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4140 PF13600.6 gi|126465763|ref|YP_001040872.1| - 0.64 10.5 7.6 5.7 7.4 0.9 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Syntaxin_2 PF14523.6 gi|126465763|ref|YP_001040872.1| - 0.65 10.4 5.9 12 6.3 0.1 2.6 1 1 1 2 2 2 0 Syntaxin-like protein DUF3450 PF11932.8 gi|126465763|ref|YP_001040872.1| - 0.66 9.2 8.3 3.4 6.9 1.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Vir_act_alpha_C PF10400.9 gi|126465763|ref|YP_001040872.1| - 0.67 10.7 11.0 0.29 11.9 2.6 2.5 1 1 0 2 2 2 0 Virulence activator alpha C-term FTA4 PF13093.6 gi|126465763|ref|YP_001040872.1| - 0.71 9.7 9.0 5.1 6.9 9.0 1.9 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Occludin_ELL PF07303.13 gi|126465763|ref|YP_001040872.1| - 0.76 10.5 6.9 2.7 8.8 6.8 1.8 1 1 0 1 1 1 0 Occludin homology domain TFA2_Winged_2 PF18121.1 gi|126465763|ref|YP_001040872.1| - 0.78 9.5 5.3 3.3 7.5 2.3 2.9 1 1 1 2 2 2 0 TFA2 Winged helix domain 2 NPV_P10 PF05531.12 gi|126465763|ref|YP_001040872.1| - 0.8 10.2 3.9 2.5 8.6 0.6 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Mod_r PF07200.13 gi|126465763|ref|YP_001040872.1| - 0.91 9.6 9.8 2.1 8.4 1.7 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Sec2p PF06428.11 gi|126465763|ref|YP_001040872.1| - 0.93 9.5 10.8 1.4 8.9 2.0 2.2 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p Seryl_tRNA_N PF02403.22 gi|126465763|ref|YP_001040872.1| - 1 9.6 11.1 6 7.1 0.5 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HAUS6_N PF14661.6 gi|126465763|ref|YP_001040872.1| - 1.1 8.8 6.2 2.4 7.7 1.8 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus FlxA PF14282.6 gi|126465763|ref|YP_001040872.1| - 1.2 9.2 6.7 0.43 10.6 0.6 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF4635 PF15466.6 gi|126465763|ref|YP_001040872.1| - 1.2 8.6 10.2 1.5 8.4 4.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) DASH_Spc34 PF08657.10 gi|126465763|ref|YP_001040872.1| - 1.8 8.3 7.8 5.3 6.8 7.7 1.7 1 1 0 1 1 1 0 DASH complex subunit Spc34 bZIP_1 PF00170.21 gi|126465763|ref|YP_001040872.1| - 2 8.6 11.0 0.88 9.7 5.1 2.2 2 0 0 2 2 2 0 bZIP transcription factor DUF2203 PF09969.9 gi|126465763|ref|YP_001040872.1| - 2.3 8.9 5.8 3.1 8.5 0.5 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Nsp1_C PF05064.13 gi|126465763|ref|YP_001040872.1| - 2.4 8.0 10.7 4.2 7.2 1.6 2.1 1 1 1 2 2 2 0 Nsp1-like C-terminal region UPF0184 PF03670.13 gi|126465763|ref|YP_001040872.1| - 2.5 8.6 4.3 13 6.3 0.7 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) ABC_tran_CTD PF16326.5 gi|126465763|ref|YP_001040872.1| - 2.7 8.3 17.4 0.4 11.0 2.5 3.2 3 1 0 3 3 3 0 ABC transporter C-terminal domain BST2 PF16716.5 gi|126465763|ref|YP_001040872.1| - 2.8 8.6 8.4 3.5 8.3 1.4 2.3 2 1 0 2 2 2 0 Bone marrow stromal antigen 2 NuA4 PF09340.10 gi|126465763|ref|YP_001040872.1| - 3.1 7.8 7.6 0.63 10.0 1.1 2.4 2 1 0 2 2 2 0 Histone acetyltransferase subunit NuA4 BRE1 PF08647.11 gi|126465763|ref|YP_001040872.1| - 3.4 7.8 11.6 16 5.7 0.7 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase FliD_N PF02465.18 gi|126465763|ref|YP_001040872.1| - 3.8 8.3 6.8 19 6.0 0.4 2.7 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus JAKMIP_CC3 PF16034.5 gi|126465763|ref|YP_001040872.1| - 9.5 6.1 15.7 5.1e+02 0.5 15.7 2.1 1 1 0 1 1 1 0 JAKMIP CC3 domain DHH PF01368.20 gi|126465764|ref|YP_001040873.1| - 8.2e-10 38.8 0.0 1.7e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|126465764|ref|YP_001040873.1| - 6.6e-06 26.6 2.7 6.9e-06 26.5 1.3 1.7 2 0 0 2 2 2 1 DHHA1 domain DUF155 PF02582.14 gi|126465764|ref|YP_001040873.1| - 0.1 12.7 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 GTP_EFTU PF00009.27 gi|126465765|ref|YP_001040874.1| - 3.3e-63 212.8 0.1 4.7e-63 212.2 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|126465765|ref|YP_001040874.1| - 2.9e-29 101.3 0.0 1.3e-28 99.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|126465765|ref|YP_001040874.1| - 2.6e-24 85.1 0.0 5.9e-24 84.0 0.0 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|126465765|ref|YP_001040874.1| - 1.6e-21 76.1 0.0 4.2e-21 74.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|126465765|ref|YP_001040874.1| - 1.9e-13 50.6 0.1 5.9e-13 49.0 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|126465765|ref|YP_001040874.1| - 2.4e-05 24.4 0.1 5.9e-05 23.1 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|126465765|ref|YP_001040874.1| - 0.1 12.4 0.0 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain Imm-NTF2-2 PF15631.6 gi|126465765|ref|YP_001040874.1| - 0.17 12.1 0.8 30 5.0 0.1 3.7 4 0 0 4 4 4 0 NTF2 fold immunity protein RsgA_GTPase PF03193.16 gi|126465765|ref|YP_001040874.1| - 0.26 11.2 0.7 0.8 9.6 0.4 1.9 1 1 1 2 2 2 0 RsgA GTPase Rrf2 PF02082.20 gi|126465766|ref|YP_001040875.1| - 0.00037 20.8 0.0 0.00045 20.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator IF2_N PF04760.15 gi|126465766|ref|YP_001040875.1| - 0.0017 18.1 0.0 0.0036 17.1 0.0 1.6 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region Fe_dep_repress PF01325.19 gi|126465766|ref|YP_001040875.1| - 0.0022 18.1 0.0 0.0038 17.4 0.0 1.4 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|126465766|ref|YP_001040875.1| - 0.01 15.7 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF2774 PF11242.8 gi|126465766|ref|YP_001040875.1| - 0.021 15.0 0.0 0.057 13.6 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2774) HTH_23 PF13384.6 gi|126465766|ref|YP_001040875.1| - 0.06 13.2 0.1 0.094 12.5 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 gi|126465766|ref|YP_001040875.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|126465766|ref|YP_001040875.1| - 0.11 12.1 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Beta-Casp PF10996.8 gi|126465769|ref|YP_001040878.1| - 3.5e-17 62.7 0.0 1.6e-16 60.5 0.0 2.0 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|126465769|ref|YP_001040878.1| - 1.4e-11 44.2 0.0 3e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|126465769|ref|YP_001040878.1| - 4.2e-10 40.0 0.8 6.1e-10 39.4 0.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|126465769|ref|YP_001040878.1| - 1.6e-08 34.2 0.2 4.7e-08 32.7 0.1 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|126465769|ref|YP_001040878.1| - 6.7e-08 32.3 0.0 1.9e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|126465769|ref|YP_001040878.1| - 0.0028 17.5 0.1 0.0079 16.1 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NAC PF01849.18 gi|126465770|ref|YP_001040879.1| - 5.9e-14 51.8 0.8 1.1e-13 50.9 0.4 1.7 2 0 0 2 2 2 1 NAC domain DUF3201 PF11447.8 gi|126465770|ref|YP_001040879.1| - 0.0045 16.5 0.2 0.011 15.2 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3201) HOIP-UBA PF16678.5 gi|126465770|ref|YP_001040879.1| - 0.0063 16.5 0.1 0.0095 16.0 0.1 1.4 1 0 0 1 1 1 1 HOIP UBA domain pair CUE PF02845.16 gi|126465770|ref|YP_001040879.1| - 0.0066 16.1 0.1 3.5 7.4 0.0 3.1 2 1 1 3 3 3 1 CUE domain UBA_4 PF14555.6 gi|126465770|ref|YP_001040879.1| - 0.061 13.2 0.0 0.13 12.1 0.0 1.5 2 0 0 2 2 2 0 UBA-like domain DUF1967 PF09269.11 gi|126465770|ref|YP_001040879.1| - 0.066 13.2 0.5 3.2 7.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) Fe_dep_repr_C PF02742.15 gi|126465770|ref|YP_001040879.1| - 0.073 13.2 0.2 0.21 11.7 0.2 1.8 2 0 0 2 2 2 0 Iron dependent repressor, metal binding and dimerisation domain B5 PF03484.15 gi|126465770|ref|YP_001040879.1| - 0.1 12.9 0.5 11 6.4 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetase B5 domain UBA PF00627.31 gi|126465770|ref|YP_001040879.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 UBA/TS-N domain BppL_N PF18338.1 gi|126465770|ref|YP_001040879.1| - 0.17 11.7 0.3 0.34 10.8 0.3 1.4 1 0 0 1 1 1 0 Lower baseplate protein N-terminal domain DNA_pol_B PF00136.21 gi|126465771|ref|YP_001040880.1| - 3.4e-51 174.4 1.5 6.9e-51 173.4 1.5 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|126465771|ref|YP_001040880.1| - 1.8e-28 99.7 1.1 3.5e-28 98.7 1.1 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|126465771|ref|YP_001040880.1| - 2.9e-07 30.6 0.3 2.6e-06 27.5 0.0 2.7 3 1 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|126465771|ref|YP_001040880.1| - 3.6e-05 23.6 0.0 7.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF1744 PF08490.12 gi|126465771|ref|YP_001040880.1| - 0.0054 15.4 0.0 0.0098 14.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1744) HTH_3 PF01381.22 gi|126465771|ref|YP_001040880.1| - 0.053 13.6 1.5 11 6.2 0.1 3.5 4 0 0 4 4 4 0 Helix-turn-helix YscO PF07321.12 gi|126465771|ref|YP_001040880.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Type III secretion protein YscO Ribosomal_S26e PF01283.19 gi|126465772|ref|YP_001040881.1| - 3e-23 82.3 2.1 3.4e-23 82.2 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|126465772|ref|YP_001040881.1| - 5.9e-05 23.2 0.2 0.0033 17.6 0.1 2.4 2 0 0 2 2 2 1 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|126465772|ref|YP_001040881.1| - 0.089 12.4 0.2 0.089 12.4 0.2 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) KOW PF00467.29 gi|126465772|ref|YP_001040881.1| - 0.1 12.6 0.6 0.23 11.5 0.6 1.6 1 0 0 1 1 1 0 KOW motif Auto_anti-p27 PF06677.12 gi|126465772|ref|YP_001040881.1| - 0.19 11.9 6.6 0.46 10.7 0.7 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) WCCH PF03716.14 gi|126465772|ref|YP_001040881.1| - 7 6.4 9.0 3.7 7.3 0.1 3.1 2 1 1 3 3 3 0 WCCH motif Methyltransf_31 PF13847.6 gi|126465775|ref|YP_001040884.1| - 4.4e-11 42.8 0.0 5.7e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|126465775|ref|YP_001040884.1| - 5.5e-11 42.4 0.4 6.9e-11 42.1 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|126465775|ref|YP_001040884.1| - 2.5e-09 37.7 0.0 3.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126465775|ref|YP_001040884.1| - 2e-06 27.8 0.0 2.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|126465775|ref|YP_001040884.1| - 2.2e-06 27.5 1.3 0.00016 21.4 1.3 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|126465775|ref|YP_001040884.1| - 9.7e-06 25.2 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.17 gi|126465775|ref|YP_001040884.1| - 1.7e-05 24.4 0.0 2.3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase DOT1 PF08123.13 gi|126465775|ref|YP_001040884.1| - 2.6e-05 23.9 0.1 5.3e-05 22.8 0.1 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_15 PF09445.10 gi|126465775|ref|YP_001040884.1| - 3.6e-05 23.4 0.0 5.5e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|126465775|ref|YP_001040884.1| - 4.2e-05 24.2 0.0 6.4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|126465775|ref|YP_001040884.1| - 0.00019 21.3 0.2 0.00022 21.0 0.2 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|126465775|ref|YP_001040884.1| - 0.0002 21.9 0.0 0.00028 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|126465775|ref|YP_001040884.1| - 0.00026 20.4 0.0 0.00032 20.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|126465775|ref|YP_001040884.1| - 0.0012 18.7 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|126465775|ref|YP_001040884.1| - 0.0021 17.5 0.0 0.003 17.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|126465775|ref|YP_001040884.1| - 0.0037 16.9 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|126465775|ref|YP_001040884.1| - 0.004 16.9 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|126465775|ref|YP_001040884.1| - 0.0087 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 DNA methylase N6_Mtase PF02384.16 gi|126465775|ref|YP_001040884.1| - 0.02 14.1 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_24 PF13578.6 gi|126465775|ref|YP_001040884.1| - 0.065 14.3 0.0 0.088 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|126465775|ref|YP_001040884.1| - 0.098 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|126465775|ref|YP_001040884.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 MraW methylase family GCD14 PF08704.10 gi|126465776|ref|YP_001040885.1| - 1.8e-33 116.2 0.0 5e-31 108.2 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|126465776|ref|YP_001040885.1| - 5.8e-15 55.4 0.0 7.8e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126465776|ref|YP_001040885.1| - 1.9e-10 41.3 0.0 3.2e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|126465776|ref|YP_001040885.1| - 2.3e-10 40.6 0.0 3.5e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|126465776|ref|YP_001040885.1| - 9.4e-08 31.7 0.0 1.3e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|126465776|ref|YP_001040885.1| - 2.2e-07 31.4 0.0 3.6e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.6 gi|126465776|ref|YP_001040885.1| - 1.5e-06 27.9 0.1 2.7e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_24 PF13578.6 gi|126465776|ref|YP_001040885.1| - 2.9e-05 25.0 0.0 7.5e-05 23.7 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|126465776|ref|YP_001040885.1| - 0.00015 21.1 0.0 0.00026 20.3 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltr_RsmB-F PF01189.17 gi|126465776|ref|YP_001040885.1| - 0.00017 21.3 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|126465776|ref|YP_001040885.1| - 0.00064 20.4 0.0 0.0021 18.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|126465776|ref|YP_001040885.1| - 0.0021 18.1 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|126465776|ref|YP_001040885.1| - 0.0041 17.1 0.0 0.0085 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|126465776|ref|YP_001040885.1| - 0.0073 15.8 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|126465776|ref|YP_001040885.1| - 0.0093 15.6 0.0 0.039 13.5 0.0 1.8 2 1 0 2 2 2 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.20 gi|126465776|ref|YP_001040885.1| - 0.09 11.8 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|126465776|ref|YP_001040885.1| - 0.096 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|126465776|ref|YP_001040885.1| - 0.1 12.4 0.0 0.95 9.3 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|126465776|ref|YP_001040885.1| - 0.1 11.9 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_30 PF05430.11 gi|126465776|ref|YP_001040885.1| - 0.2 11.5 0.1 0.42 10.5 0.1 1.5 1 1 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase ASCH PF04266.14 gi|126465777|ref|YP_001040886.1| - 0.055 14.1 0.0 0.077 13.6 0.0 1.3 1 0 0 1 1 1 0 ASCH domain RHH_1 PF01402.21 gi|126465778|ref|YP_001040887.1| - 6.6e-10 38.6 0.2 9e-10 38.1 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|126465778|ref|YP_001040887.1| - 3.4e-05 24.0 0.0 3.7e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|126465778|ref|YP_001040887.1| - 0.0002 21.7 0.0 0.00021 21.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|126465778|ref|YP_001040887.1| - 0.0048 16.8 0.0 0.007 16.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB Alpha_Helical PF18489.1 gi|126465779|ref|YP_001040888.1| - 2.3e-23 82.8 0.4 3.5e-23 82.2 0.4 1.3 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|126465779|ref|YP_001040888.1| - 2.6e-07 30.7 0.0 4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain PMT_2 PF13231.6 gi|126465780|ref|YP_001040889.1| - 2.8e-08 34.1 18.5 2.8e-08 34.1 18.5 3.6 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|126465780|ref|YP_001040889.1| - 0.00014 21.6 29.3 0.00082 19.0 20.5 3.4 2 2 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1097 PF06496.11 gi|126465780|ref|YP_001040889.1| - 0.073 13.2 0.0 0.073 13.2 0.0 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF1097) DUF4491 PF14898.6 gi|126465781|ref|YP_001040890.1| - 0.04 14.3 0.3 0.04 14.3 0.3 3.3 3 1 1 4 4 4 0 Domain of unknown function (DUF4491) Glyco_tran_28_C PF04101.16 gi|126465782|ref|YP_001040891.1| - 0.00062 19.8 0.0 0.0013 18.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain PALP PF00291.25 gi|126465782|ref|YP_001040891.1| - 0.0013 18.2 0.0 0.0093 15.4 0.0 1.9 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme Kelch_1 PF01344.25 gi|126465782|ref|YP_001040891.1| - 0.089 12.4 0.1 7.6 6.2 0.1 2.7 2 0 0 2 2 2 0 Kelch motif Alg14 PF08660.11 gi|126465782|ref|YP_001040891.1| - 0.15 12.0 0.0 0.7 9.8 0.0 2.0 1 1 0 1 1 1 0 Oligosaccharide biosynthesis protein Alg14 like PALP PF00291.25 gi|126465783|ref|YP_001040892.1| - 1e-55 189.3 0.0 1.1e-55 189.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DNA_ligase_ZBD PF03119.16 gi|126465783|ref|YP_001040892.1| - 0.04 13.9 1.2 0.82 9.7 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NRDD PF13597.6 gi|126465783|ref|YP_001040892.1| - 0.066 12.0 0.6 0.1 11.3 0.6 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase A2L_zn_ribbon PF08792.10 gi|126465783|ref|YP_001040892.1| - 0.11 12.2 1.2 7.3 6.4 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|126465783|ref|YP_001040892.1| - 0.12 12.0 2.1 1.8 8.1 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|126465783|ref|YP_001040892.1| - 0.13 11.6 1.5 3.1 7.2 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger HypA PF01155.19 gi|126465783|ref|YP_001040892.1| - 0.15 12.1 0.1 0.24 11.4 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ogr_Delta PF04606.12 gi|126465783|ref|YP_001040892.1| - 0.2 11.7 0.3 7.1 6.7 0.1 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|126465783|ref|YP_001040892.1| - 0.23 11.1 1.4 4.8 6.9 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|126465783|ref|YP_001040892.1| - 0.23 10.9 5.9 1.2 8.7 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|126465783|ref|YP_001040892.1| - 0.37 10.6 3.0 3.5 7.5 0.1 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.6 gi|126465783|ref|YP_001040892.1| - 0.44 10.3 9.4 1.3 8.8 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|126465783|ref|YP_001040892.1| - 0.55 9.9 1.8 8.3 6.2 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1610 PF07754.11 gi|126465783|ref|YP_001040892.1| - 0.62 10.1 4.3 11 6.1 0.3 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|126465783|ref|YP_001040892.1| - 0.89 9.3 12.3 21 4.9 12.5 2.2 1 1 1 2 2 2 0 Rubredoxin metal binding domain DUF4379 PF14311.6 gi|126465783|ref|YP_001040892.1| - 1 9.8 9.5 14 6.2 10.5 2.1 1 1 1 2 2 2 0 Probable Zinc-ribbon domain Terminase_GpA PF05876.12 gi|126465783|ref|YP_001040892.1| - 1.1 7.7 2.1 1 7.9 0.7 1.5 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-RanBP PF00641.18 gi|126465783|ref|YP_001040892.1| - 1.9 7.9 9.3 5.2 6.5 0.6 2.3 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others Peptidase_M50 PF02163.22 gi|126465784|ref|YP_001040893.1| - 3.9e-15 55.8 10.6 2.4e-14 53.2 8.4 2.8 2 1 0 2 2 2 1 Peptidase family M50 PDZ_6 PF17820.1 gi|126465784|ref|YP_001040893.1| - 5.9e-09 35.7 0.0 9.4e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|126465784|ref|YP_001040893.1| - 0.00013 22.3 0.0 0.00027 21.2 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|126465784|ref|YP_001040893.1| - 0.0063 16.8 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 PDZ domain DUF1129 PF06570.11 gi|126465784|ref|YP_001040893.1| - 1.8 8.0 8.5 7.8 5.9 1.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) NTP_transf_2 PF01909.23 gi|126465785|ref|YP_001040894.1| - 3.2e-06 27.4 0.0 1.1e-05 25.6 0.0 2.1 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126465785|ref|YP_001040894.1| - 0.00015 21.8 0.0 0.0003 20.8 0.0 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_24 PF13412.6 gi|126465785|ref|YP_001040894.1| - 0.0013 18.3 1.4 0.068 12.7 0.1 2.6 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding MazG PF03819.17 gi|126465785|ref|YP_001040894.1| - 0.048 13.8 0.0 1.3 9.3 0.0 2.4 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain HTH_AsnC-type PF13404.6 gi|126465785|ref|YP_001040894.1| - 0.093 12.6 0.9 0.44 10.4 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain eRF1_1 PF03463.15 gi|126465786|ref|YP_001040895.1| - 1.1e-31 109.5 0.0 1.8e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|126465786|ref|YP_001040895.1| - 1.9e-20 73.4 0.1 9.2e-20 71.2 0.0 2.1 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|126465786|ref|YP_001040895.1| - 7.4e-12 45.7 0.1 1.6e-11 44.6 0.1 1.6 1 0 0 1 1 1 1 eRF1 domain 2 UTP15_C PF09384.10 gi|126465786|ref|YP_001040895.1| - 0.11 12.2 0.1 0.28 10.9 0.1 1.7 1 0 0 1 1 1 0 UTP15 C terminal DNA_pol_B PF00136.21 gi|126465787|ref|YP_001040896.1| - 4.2e-73 246.6 0.1 6.5e-73 246.0 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|126465787|ref|YP_001040896.1| - 4.5e-37 127.9 0.8 2.6e-35 122.2 0.8 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|126465787|ref|YP_001040896.1| - 5.8e-09 36.2 0.2 1.8e-08 34.6 0.1 2.0 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|126465787|ref|YP_001040896.1| - 2.3e-05 23.5 0.4 0.0011 17.9 0.0 2.3 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral DNA_pol_B_exo2 PF10108.9 gi|126465787|ref|YP_001040896.1| - 6e-05 22.8 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_4 PF14490.6 gi|126465787|ref|YP_001040896.1| - 0.14 12.2 0.0 0.57 10.2 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain Toprim_4 PF13662.6 gi|126465788|ref|YP_001040897.1| - 3.2e-10 40.4 1.6 8.1e-10 39.0 0.1 2.5 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.6 gi|126465788|ref|YP_001040897.1| - 6.6e-08 32.9 0.0 5e-07 30.1 0.0 2.3 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|126465788|ref|YP_001040897.1| - 1.2e-05 25.5 1.1 6.7e-05 23.1 0.1 2.8 3 0 0 3 3 3 1 Toprim domain PBSX_XtrA PF17356.2 gi|126465788|ref|YP_001040897.1| - 0.035 14.0 1.1 2.3 8.2 0.0 3.2 2 1 1 3 3 3 0 Phage-like element PBSX protein XtrA Toprim_3 PF13362.6 gi|126465788|ref|YP_001040897.1| - 0.05 14.0 0.1 0.19 12.1 0.0 2.0 2 0 0 2 2 2 0 Toprim domain SBP_bac_3 PF00497.20 gi|126465788|ref|YP_001040897.1| - 0.087 12.2 0.1 0.32 10.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 YtxH PF12732.7 gi|126465788|ref|YP_001040897.1| - 0.39 11.3 6.3 3.4 8.3 1.2 2.8 2 0 0 2 2 2 0 YtxH-like protein PSK_trans_fac PF07704.11 gi|126465788|ref|YP_001040897.1| - 0.88 10.4 4.2 1.5 9.6 2.1 2.3 2 0 0 2 2 2 0 Rv0623-like transcription factor HAD_2 PF13419.6 gi|126465788|ref|YP_001040897.1| - 0.89 9.6 4.2 27 4.8 0.1 3.1 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase tRNA-synt_1b PF00579.25 gi|126465789|ref|YP_001040898.1| - 2.6e-52 177.9 0.0 2.2e-51 174.9 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Lactamase_B_3 PF13483.6 gi|126465790|ref|YP_001040899.1| - 1.5e-22 80.2 0.1 2.6e-22 79.4 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|126465790|ref|YP_001040899.1| - 6.8e-21 74.7 0.1 1.7e-20 73.4 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126465790|ref|YP_001040899.1| - 7.4e-12 45.7 1.7 2.7e-11 43.8 1.7 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.24 gi|126465791|ref|YP_001040900.1| - 3.2e-38 131.5 0.0 3.9e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.12 gi|126465792|ref|YP_001040901.1| - 2.9e-148 493.6 2.1 3.2e-148 493.5 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) YMF19 PF02326.15 gi|126465792|ref|YP_001040901.1| - 0.51 11.1 4.0 0.44 11.4 1.7 2.1 1 1 1 2 2 2 0 Plant ATP synthase F0 DZR PF12773.7 gi|126465793|ref|YP_001040902.1| - 0.0037 17.2 0.1 0.0049 16.9 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|126465793|ref|YP_001040902.1| - 0.004 16.6 1.7 1.3 8.6 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|126465793|ref|YP_001040902.1| - 0.0046 16.3 1.4 0.082 12.3 0.2 2.1 2 0 0 2 2 2 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|126465793|ref|YP_001040902.1| - 0.0059 16.3 3.7 0.25 11.1 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|126465793|ref|YP_001040902.1| - 0.012 15.7 0.2 0.013 15.5 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|126465793|ref|YP_001040902.1| - 0.023 14.6 6.0 0.15 12.0 0.7 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|126465793|ref|YP_001040902.1| - 0.026 14.3 4.4 0.075 12.8 1.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.13 gi|126465793|ref|YP_001040902.1| - 0.032 13.9 1.1 0.94 9.2 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DiS_P_DiS PF06750.13 gi|126465793|ref|YP_001040902.1| - 0.046 13.8 0.9 0.2 11.8 0.9 1.9 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Med26 PF08711.11 gi|126465793|ref|YP_001040902.1| - 0.05 13.6 0.1 0.15 12.1 0.1 2.1 1 1 0 1 1 1 0 TFIIS helical bundle-like domain Nudix_N_2 PF14803.6 gi|126465793|ref|YP_001040902.1| - 0.057 13.3 0.4 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.12 gi|126465793|ref|YP_001040902.1| - 0.059 13.4 0.5 0.44 10.6 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger SIR2 PF02146.17 gi|126465793|ref|YP_001040902.1| - 0.06 13.3 0.3 0.072 13.0 0.3 1.1 1 0 0 1 1 1 0 Sir2 family DUF1451 PF07295.11 gi|126465793|ref|YP_001040902.1| - 0.072 13.1 0.7 1.4 8.9 0.0 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain DUF4536 PF15055.6 gi|126465793|ref|YP_001040902.1| - 0.088 13.1 0.9 0.096 12.9 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4536) DUF2387 PF09526.10 gi|126465793|ref|YP_001040902.1| - 0.089 12.9 3.4 1.5 9.0 0.3 2.2 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF2089 PF09862.9 gi|126465793|ref|YP_001040902.1| - 0.099 12.7 0.3 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) PhnA_Zn_Ribbon PF08274.12 gi|126465793|ref|YP_001040902.1| - 0.23 11.5 3.1 0.82 9.7 0.4 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|126465793|ref|YP_001040902.1| - 0.31 10.8 3.3 4.7 7.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|126465793|ref|YP_001040902.1| - 0.43 10.1 5.9 3 7.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|126465793|ref|YP_001040902.1| - 0.44 10.7 6.8 1.1 9.4 6.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain YdjO PF14169.6 gi|126465793|ref|YP_001040902.1| - 0.64 9.8 4.0 5.6 6.8 4.0 2.1 1 1 0 1 1 1 0 Cold-inducible protein YdjO zf_UBZ PF18439.1 gi|126465793|ref|YP_001040902.1| - 0.82 9.3 3.0 6.2 6.5 0.3 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|126465793|ref|YP_001040902.1| - 4.5 7.9 6.9 12 6.5 1.4 2.3 1 1 1 2 2 2 0 Zinc-finger double domain zf_C2H2_10 PF18414.1 gi|126465793|ref|YP_001040902.1| - 4.9 6.8 6.4 16 5.1 1.7 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger Pox_P21 PF05313.12 gi|126465794|ref|YP_001040903.1| - 0.8 9.3 9.4 1.1 8.8 9.4 1.2 1 0 0 1 1 1 0 Poxvirus P21 membrane protein DUF4199 PF13858.6 gi|126465794|ref|YP_001040903.1| - 1.6 9.1 12.5 0.41 11.0 7.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF2070 PF09843.9 gi|126465794|ref|YP_001040903.1| - 2 6.6 10.3 2.5 6.3 10.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF3328 PF11807.8 gi|126465794|ref|YP_001040903.1| - 3.5 7.3 7.4 0.93 9.2 3.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3328) Fig1 PF12351.8 gi|126465794|ref|YP_001040903.1| - 4.7 7.1 17.0 0.2 11.6 3.7 2.1 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 DUF131 PF01998.17 gi|126465795|ref|YP_001040904.1| - 1.8e-16 59.5 11.6 1.8e-16 59.5 11.6 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 Saf_2TM PF18303.1 gi|126465795|ref|YP_001040904.1| - 0.74 9.4 5.0 0.85 9.2 0.1 2.0 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain DUF973 PF06157.11 gi|126465795|ref|YP_001040904.1| - 0.86 8.6 17.1 2.6 7.0 17.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF973) KASH PF10541.9 gi|126465795|ref|YP_001040904.1| - 0.92 9.8 7.3 7.5 6.9 4.6 2.1 2 0 0 2 2 2 0 Nuclear envelope localisation domain Sigma_reg_N PF13800.6 gi|126465795|ref|YP_001040904.1| - 2.1 8.7 7.4 6.7 7.1 4.7 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF202 PF02656.15 gi|126465795|ref|YP_001040904.1| - 3.6 8.1 6.4 7.9 7.0 6.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2207 PF09972.9 gi|126465795|ref|YP_001040904.1| - 3.6 6.2 8.2 4.9 5.8 8.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) RDD PF06271.12 gi|126465795|ref|YP_001040904.1| - 6.8 6.9 10.6 18 5.5 10.6 1.6 1 1 0 1 1 1 0 RDD family DUF3784 PF12650.7 gi|126465795|ref|YP_001040904.1| - 8.5 6.6 16.3 2.8e+02 1.8 16.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) DUF1805 PF08827.11 gi|126465796|ref|YP_001040905.1| - 2.8e-23 82.0 0.2 3.6e-23 81.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) DUF3687 PF12459.8 gi|126465797|ref|YP_001040906.1| - 0.035 13.6 2.0 0.035 13.6 2.0 2.1 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein Popeye PF04831.13 gi|126465797|ref|YP_001040906.1| - 1.3 9.1 3.6 1.6 8.9 2.8 1.5 1 1 0 1 1 1 0 Popeye protein conserved region DUF485 PF04341.12 gi|126465797|ref|YP_001040906.1| - 1.6 8.7 7.7 8.7 6.4 7.9 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF485 Sigma_reg_N PF13800.6 gi|126465797|ref|YP_001040906.1| - 7.2 7.0 9.0 0.39 11.0 0.5 2.0 1 1 1 2 2 2 0 Sigma factor regulator N-terminal PK PF00224.21 gi|126465798|ref|YP_001040907.1| - 1.6e-90 303.5 1.1 1.9e-90 303.2 1.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|126465798|ref|YP_001040907.1| - 1e-08 35.4 0.0 2.4e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|126465798|ref|YP_001040907.1| - 0.00026 20.2 0.0 0.0004 19.6 0.0 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Cas_DxTHG PF09455.10 gi|126465799|ref|YP_001040908.1| - 4.8e-44 151.4 9.3 6.3e-44 151.0 9.3 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Tom37 PF10568.9 gi|126465799|ref|YP_001040908.1| - 0.077 13.3 0.0 0.27 11.6 0.0 1.9 2 0 0 2 2 2 0 Outer mitochondrial membrane transport complex protein TIM PF00121.18 gi|126465800|ref|YP_001040909.1| - 1.2e-15 57.5 0.0 1e-14 54.6 0.0 1.9 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|126465800|ref|YP_001040909.1| - 2.7e-05 23.6 0.8 4.7e-05 22.8 0.8 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|126465800|ref|YP_001040909.1| - 9e-05 21.4 0.4 0.0068 15.3 0.2 2.5 2 1 0 2 2 2 1 Tryptophan synthase alpha chain IGPS PF00218.21 gi|126465800|ref|YP_001040909.1| - 0.00033 19.9 0.0 0.00061 19.0 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|126465800|ref|YP_001040909.1| - 0.0018 17.4 0.4 0.007 15.4 0.3 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|126465800|ref|YP_001040909.1| - 0.0034 16.9 0.2 0.13 11.7 0.1 2.2 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|126465800|ref|YP_001040909.1| - 0.018 14.4 0.2 0.024 14.0 0.2 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase CutC PF03932.14 gi|126465800|ref|YP_001040909.1| - 0.028 13.9 0.2 0.048 13.1 0.2 1.4 1 0 0 1 1 1 0 CutC family FBPase_3 PF01950.16 gi|126465801|ref|YP_001040910.1| - 6.7e-185 614.4 0.0 7.7e-185 614.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.27 gi|126465802|ref|YP_001040911.1| - 6.3e-41 140.1 0.0 1.7e-21 77.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|126465802|ref|YP_001040911.1| - 1e-15 58.4 3.3 0.0013 18.6 0.6 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465802|ref|YP_001040911.1| - 3.8e-13 49.4 8.1 8.6e-06 25.3 1.0 3.5 2 2 0 3 3 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|126465802|ref|YP_001040911.1| - 2.8e-12 46.2 5.1 7.3e-12 44.9 5.1 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|126465802|ref|YP_001040911.1| - 6.4e-08 32.1 5.8 6.4e-08 32.1 5.8 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465802|ref|YP_001040911.1| - 2.4e-07 30.7 4.8 5.9e-05 23.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|126465802|ref|YP_001040911.1| - 1.4e-06 28.3 0.5 0.017 14.9 0.1 2.8 3 0 0 3 3 3 2 AAA ATPase domain Fer4_6 PF12837.7 gi|126465802|ref|YP_001040911.1| - 6.2e-06 26.1 13.7 0.00012 22.0 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126465802|ref|YP_001040911.1| - 1.1e-05 25.4 8.7 2.5e-05 24.3 8.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126465802|ref|YP_001040911.1| - 1.2e-05 25.8 17.2 0.00085 19.9 1.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|126465802|ref|YP_001040911.1| - 1.4e-05 25.7 0.8 0.16 12.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|126465802|ref|YP_001040911.1| - 0.00012 21.8 0.4 0.15 11.8 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_2 PF12797.7 gi|126465802|ref|YP_001040911.1| - 0.00012 21.9 1.5 0.00012 21.9 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_24 PF13479.6 gi|126465802|ref|YP_001040911.1| - 0.00025 20.8 1.4 0.076 12.7 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|126465802|ref|YP_001040911.1| - 0.00029 21.1 0.1 1.3 9.3 0.0 2.9 2 1 0 2 2 2 2 AAA domain Fer4_16 PF13484.6 gi|126465802|ref|YP_001040911.1| - 0.00032 21.6 5.7 0.0051 17.7 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|126465802|ref|YP_001040911.1| - 0.00032 20.8 6.1 0.00068 19.7 6.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|126465802|ref|YP_001040911.1| - 0.00058 19.8 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_33 PF13671.6 gi|126465802|ref|YP_001040911.1| - 0.0017 18.5 0.0 0.99 9.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|126465802|ref|YP_001040911.1| - 0.0017 18.8 0.5 2.2 8.7 0.0 3.5 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126465802|ref|YP_001040911.1| - 0.0018 18.7 0.1 1.5 9.2 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|126465802|ref|YP_001040911.1| - 0.0019 18.0 0.1 2 8.1 0.0 2.5 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.6 gi|126465802|ref|YP_001040911.1| - 0.0041 17.3 0.2 5.2 7.4 0.0 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 gi|126465802|ref|YP_001040911.1| - 0.0058 16.3 1.3 2.7 7.6 0.3 2.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|126465802|ref|YP_001040911.1| - 0.023 14.6 1.3 6.9 6.6 0.2 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|126465802|ref|YP_001040911.1| - 0.028 14.3 3.1 4.2 7.3 0.0 4.1 5 0 0 5 5 4 0 RsgA GTPase Mg_chelatase PF01078.21 gi|126465802|ref|YP_001040911.1| - 0.034 13.5 0.1 8.6 5.7 0.0 3.1 4 0 0 4 4 4 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|126465802|ref|YP_001040911.1| - 0.041 13.9 2.9 2 8.4 0.1 3.5 3 1 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.17 gi|126465802|ref|YP_001040911.1| - 0.046 13.5 0.4 13 5.5 0.0 3.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|126465802|ref|YP_001040911.1| - 0.067 13.7 0.7 5.3 7.6 0.0 2.8 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|126465802|ref|YP_001040911.1| - 0.072 12.8 0.4 25 4.5 0.0 3.1 3 0 0 3 3 3 0 Thymidylate kinase AAA_19 PF13245.6 gi|126465802|ref|YP_001040911.1| - 0.09 13.1 1.8 5.2 7.4 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|126465802|ref|YP_001040911.1| - 0.099 11.3 0.0 3.9 6.0 0.1 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|126465802|ref|YP_001040911.1| - 0.2 12.0 0.1 12 6.4 0.0 2.6 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.22 gi|126465802|ref|YP_001040911.1| - 0.21 10.8 2.3 10 5.2 0.4 2.4 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|126465802|ref|YP_001040911.1| - 0.37 10.7 3.4 6.3 6.7 0.3 2.4 2 0 0 2 2 2 0 NACHT domain Fer4_17 PF13534.6 gi|126465802|ref|YP_001040911.1| - 0.48 11.0 7.5 0.087 13.4 1.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_28 PF13521.6 gi|126465802|ref|YP_001040911.1| - 0.99 9.6 5.4 24 5.1 0.1 3.4 3 1 0 3 3 3 0 AAA domain Fer4_3 PF12798.7 gi|126465802|ref|YP_001040911.1| - 1.1 10.3 15.0 0.17 12.9 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126465802|ref|YP_001040911.1| - 1.3 9.8 13.5 0.31 11.7 3.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126465802|ref|YP_001040911.1| - 1.4 9.4 7.4 0.22 12.0 1.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|126465802|ref|YP_001040911.1| - 2 8.3 7.8 6.1 6.7 0.1 3.5 4 0 0 4 4 4 0 NTPase RNA_POL_M_15KD PF02150.16 gi|126465803|ref|YP_001040912.1| - 7e-07 29.0 0.5 1.1e-06 28.4 0.5 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|126465803|ref|YP_001040912.1| - 8.2e-06 25.4 3.0 3.2e-05 23.5 3.0 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DUF3945 PF13101.6 gi|126465803|ref|YP_001040912.1| - 0.00026 20.7 0.1 0.00038 20.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3945) DZR PF12773.7 gi|126465803|ref|YP_001040912.1| - 0.001 19.1 0.4 0.0016 18.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|126465803|ref|YP_001040912.1| - 0.0014 18.3 5.0 0.21 11.4 0.7 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|126465803|ref|YP_001040912.1| - 0.0021 18.4 0.4 0.0034 17.7 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|126465803|ref|YP_001040912.1| - 0.0043 16.6 0.6 3.2 7.4 0.0 2.5 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|126465803|ref|YP_001040912.1| - 0.011 15.6 0.2 0.025 14.5 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.19 gi|126465803|ref|YP_001040912.1| - 0.014 15.2 2.4 0.02 14.7 2.4 1.3 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.6 gi|126465803|ref|YP_001040912.1| - 0.015 14.6 1.2 0.028 13.7 1.2 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|126465803|ref|YP_001040912.1| - 0.021 14.7 1.2 0.97 9.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.12 gi|126465803|ref|YP_001040912.1| - 0.033 13.7 0.4 0.064 12.8 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding IBR PF01485.21 gi|126465803|ref|YP_001040912.1| - 0.039 14.2 0.3 0.061 13.6 0.3 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-IS66 PF13005.7 gi|126465803|ref|YP_001040912.1| - 0.043 14.2 0.8 0.71 10.3 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 eIF-5_eIF-2B PF01873.17 gi|126465803|ref|YP_001040912.1| - 0.052 13.4 0.4 0.13 12.1 0.2 1.7 2 0 0 2 2 2 0 Domain found in IF2B/IF5 zinc_ribbon_15 PF17032.5 gi|126465803|ref|YP_001040912.1| - 0.078 13.7 1.1 2.8 8.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon family Mu-like_Com PF10122.9 gi|126465803|ref|YP_001040912.1| - 0.079 12.4 4.7 0.47 9.9 0.1 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-ribbon_3 PF13248.6 gi|126465803|ref|YP_001040912.1| - 0.092 12.2 3.2 1.4 8.4 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126465803|ref|YP_001040912.1| - 0.094 12.7 1.2 0.23 11.5 1.2 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|126465803|ref|YP_001040912.1| - 0.096 12.8 3.3 5.9 7.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|126465803|ref|YP_001040912.1| - 0.13 12.2 4.9 1.5 8.8 5.3 2.2 1 1 1 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.6 gi|126465803|ref|YP_001040912.1| - 0.44 11.1 5.0 10 6.7 4.1 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S17e PF00833.18 gi|126465805|ref|YP_001040914.1| - 1.1e-20 73.8 1.6 1.2e-20 73.6 1.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 Cpn60_TCP1 PF00118.24 gi|126465806|ref|YP_001040915.1| - 1.3e-183 611.1 13.6 1.5e-183 610.9 13.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phage_fiber_2 PF03406.13 gi|126465806|ref|YP_001040915.1| - 0.0092 15.5 0.4 2.7 7.6 0.1 3.1 2 0 0 2 2 2 2 Phage tail fibre repeat Spb1_C PF07780.12 gi|126465806|ref|YP_001040915.1| - 0.04 13.5 0.0 0.093 12.3 0.0 1.6 1 0 0 1 1 1 0 Spb1 C-terminal domain Telomere_res PF16684.5 gi|126465806|ref|YP_001040915.1| - 0.098 12.1 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Telomere resolvase Dak2 PF02734.17 gi|126465806|ref|YP_001040915.1| - 0.13 12.1 3.7 0.13 12.1 0.4 2.4 2 1 0 2 2 2 0 DAK2 domain RNA_pol_RpbG PF16992.5 gi|126465807|ref|YP_001040916.1| - 1.6e-18 66.9 2.5 1.8e-18 66.7 2.5 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|126465807|ref|YP_001040916.1| - 0.0049 17.1 0.2 1.9 8.7 0.1 2.1 1 1 1 2 2 2 2 RNA polymerase Rpb8 DUF5599 PF18141.1 gi|126465807|ref|YP_001040916.1| - 0.015 15.5 0.1 0.029 14.6 0.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF5599) Lsm_C PF14894.6 gi|126465808|ref|YP_001040917.1| - 1.5e-28 98.4 0.6 3.5e-28 97.2 0.3 1.7 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|126465808|ref|YP_001040917.1| - 1.3e-08 34.4 0.0 2.2e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|126465808|ref|YP_001040917.1| - 0.00047 20.2 0.0 0.00071 19.7 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Gemin6 PF06372.12 gi|126465808|ref|YP_001040917.1| - 0.0055 16.3 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 Gemin6 protein LSM14 PF12701.7 gi|126465808|ref|YP_001040917.1| - 0.072 13.2 0.0 0.099 12.8 0.0 1.5 1 1 0 1 1 1 0 Scd6-like Sm domain TGT PF01702.18 gi|126465809|ref|YP_001040918.1| - 7.9e-62 209.4 0.0 1.1e-61 208.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|126465809|ref|YP_001040918.1| - 3.2e-08 33.6 0.3 8.7e-08 32.2 0.3 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|126465810|ref|YP_001040919.1| - 3.9e-36 125.1 0.0 4.8e-36 124.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.6 gi|126465811|ref|YP_001040920.1| - 2.8e-16 59.4 0.0 4.3e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|126465811|ref|YP_001040920.1| - 2e-11 43.7 0.0 8.9e-11 41.6 0.0 2.0 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|126465811|ref|YP_001040920.1| - 0.00053 20.2 0.0 0.00085 19.5 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Glyco_trans_1_2 PF13524.6 gi|126465811|ref|YP_001040920.1| - 0.085 13.3 0.0 2.6 8.5 0.0 2.3 1 1 0 2 2 2 0 Glycosyl transferases group 1 AAA PF00004.29 gi|126465812|ref|YP_001040921.1| - 6.3e-44 149.6 0.0 1.2e-43 148.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126465812|ref|YP_001040921.1| - 3.5e-12 45.9 0.1 7.7e-12 44.8 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|126465812|ref|YP_001040921.1| - 2.5e-11 43.4 0.9 6.1e-11 42.1 0.9 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|126465812|ref|YP_001040921.1| - 7.5e-07 29.4 0.0 2e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|126465812|ref|YP_001040921.1| - 2.3e-06 28.1 0.3 0.00028 21.3 0.1 2.4 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|126465812|ref|YP_001040921.1| - 9.6e-06 25.4 0.0 2.8e-05 23.9 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|126465812|ref|YP_001040921.1| - 1.2e-05 25.3 0.1 5.2e-05 23.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Prot_ATP_OB_N PF17758.1 gi|126465812|ref|YP_001040921.1| - 1.8e-05 24.3 0.3 5.1e-05 22.8 0.3 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_22 PF13401.6 gi|126465812|ref|YP_001040921.1| - 0.0003 21.1 0.3 0.023 15.0 0.1 2.5 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|126465812|ref|YP_001040921.1| - 0.0013 18.0 0.0 0.0028 16.9 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|126465812|ref|YP_001040921.1| - 0.0014 19.2 0.1 0.03 14.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|126465812|ref|YP_001040921.1| - 0.0019 18.3 0.1 0.0062 16.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.21 gi|126465812|ref|YP_001040921.1| - 0.0024 17.3 0.0 0.015 14.7 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|126465812|ref|YP_001040921.1| - 0.0047 16.1 0.0 0.009 15.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|126465812|ref|YP_001040921.1| - 0.0052 17.2 0.1 0.023 15.1 0.1 2.1 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|126465812|ref|YP_001040921.1| - 0.0053 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|126465812|ref|YP_001040921.1| - 0.0079 16.4 0.0 0.015 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|126465812|ref|YP_001040921.1| - 0.0093 16.3 0.0 0.024 15.0 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.6 gi|126465812|ref|YP_001040921.1| - 0.0098 16.1 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|126465812|ref|YP_001040921.1| - 0.03 13.6 0.1 0.076 12.3 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|126465812|ref|YP_001040921.1| - 0.036 14.0 0.2 0.19 11.7 0.1 2.0 2 0 0 2 2 2 0 NACHT domain ATPase PF06745.13 gi|126465812|ref|YP_001040921.1| - 0.037 13.4 0.1 0.14 11.5 0.1 2.0 1 1 0 1 1 1 0 KaiC AAA_24 PF13479.6 gi|126465812|ref|YP_001040921.1| - 0.061 13.0 0.1 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|126465812|ref|YP_001040921.1| - 0.063 13.2 0.1 0.063 13.2 0.1 2.5 3 1 0 3 3 1 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|126465812|ref|YP_001040921.1| - 0.076 12.5 0.0 0.22 11.0 0.0 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|126465812|ref|YP_001040921.1| - 0.077 12.2 0.0 0.19 10.8 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|126465812|ref|YP_001040921.1| - 0.083 12.9 0.0 0.2 11.7 0.0 1.6 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|126465812|ref|YP_001040921.1| - 0.086 12.8 0.1 0.28 11.1 0.1 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain Sigma54_activat PF00158.26 gi|126465812|ref|YP_001040921.1| - 0.09 12.5 0.0 0.54 10.0 0.0 2.3 4 0 0 4 4 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|126465812|ref|YP_001040921.1| - 0.091 13.3 0.0 0.22 12.0 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|126465812|ref|YP_001040921.1| - 0.16 11.0 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|126465812|ref|YP_001040921.1| - 0.18 11.4 0.2 0.45 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain HTH_3 PF01381.22 gi|126465813|ref|YP_001040922.1| - 3.8e-10 39.7 2.4 6e-10 39.0 2.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|126465813|ref|YP_001040922.1| - 7.9e-09 35.7 2.0 1.5e-08 34.9 2.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|126465813|ref|YP_001040922.1| - 2.5e-06 27.4 1.1 4.9e-06 26.5 1.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|126465813|ref|YP_001040922.1| - 0.00057 19.7 0.9 0.0012 18.6 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|126465813|ref|YP_001040922.1| - 0.03 14.4 4.5 4.2 7.5 4.5 2.5 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zinc_ribbon_2 PF13240.6 gi|126465813|ref|YP_001040922.1| - 0.035 13.8 0.9 2.7 7.8 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Pou PF00157.17 gi|126465813|ref|YP_001040922.1| - 0.083 12.9 0.3 0.19 11.7 0.3 1.6 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain DZR PF12773.7 gi|126465813|ref|YP_001040922.1| - 0.23 11.5 2.2 0.58 10.2 2.2 1.6 1 1 0 1 1 1 0 Double zinc ribbon Cas_CT1975 PF09344.10 gi|126465813|ref|YP_001040922.1| - 0.51 9.8 3.7 0.74 9.2 1.8 1.9 2 0 0 2 2 2 0 CT1975-like protein MMR_HSR1 PF01926.23 gi|126465814|ref|YP_001040923.1| - 2.6e-18 66.1 0.2 8e-18 64.6 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|126465814|ref|YP_001040923.1| - 3.2e-16 59.7 7.7 6.5e-16 58.7 7.7 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|126465814|ref|YP_001040923.1| - 4.4e-10 40.1 0.4 1.1e-09 38.8 0.4 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal Arf PF00025.21 gi|126465814|ref|YP_001040923.1| - 4.1e-09 36.1 0.3 1.6e-08 34.2 0.1 2.1 2 1 0 2 2 2 1 ADP-ribosylation factor family FeoB_N PF02421.18 gi|126465814|ref|YP_001040923.1| - 6.6e-09 35.5 1.5 1e-08 34.8 0.1 2.0 2 1 1 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|126465814|ref|YP_001040923.1| - 1e-08 35.0 2.7 7.5e-06 25.6 0.2 3.0 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|126465814|ref|YP_001040923.1| - 6e-07 29.5 0.7 0.0069 16.3 0.2 3.3 3 0 0 3 3 3 2 RsgA GTPase SRPRB PF09439.10 gi|126465814|ref|YP_001040923.1| - 0.00011 21.6 0.0 0.00033 20.1 0.0 1.8 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|126465814|ref|YP_001040923.1| - 0.0041 16.7 0.0 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 Ras family cobW PF02492.19 gi|126465814|ref|YP_001040923.1| - 0.0066 16.1 6.3 0.84 9.2 0.3 3.2 4 0 0 4 4 4 2 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|126465814|ref|YP_001040923.1| - 0.0071 16.6 0.0 0.052 13.8 0.0 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|126465814|ref|YP_001040923.1| - 0.015 15.3 5.9 0.053 13.5 1.6 3.0 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain NOG1 PF06858.14 gi|126465814|ref|YP_001040923.1| - 0.023 14.5 0.4 0.21 11.4 0.0 2.8 3 0 0 3 3 2 0 Nucleolar GTP-binding protein 1 (NOG1) ATP_bind_1 PF03029.17 gi|126465814|ref|YP_001040923.1| - 0.025 14.3 0.1 1.7 8.4 0.0 2.9 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|126465814|ref|YP_001040923.1| - 0.041 13.6 3.9 0.98 9.2 3.9 2.4 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|126465814|ref|YP_001040923.1| - 0.09 13.2 0.0 0.15 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|126465814|ref|YP_001040923.1| - 0.093 12.6 0.1 0.38 10.7 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|126465814|ref|YP_001040923.1| - 0.14 12.7 0.0 0.43 11.1 0.0 1.8 1 0 0 1 1 1 0 ABC transporter Trm56 PF01994.16 gi|126465815|ref|YP_001040924.1| - 4.4e-50 168.6 0.0 5.6e-50 168.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|126465815|ref|YP_001040924.1| - 0.12 11.8 0.5 12 5.2 0.0 2.2 1 1 1 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP TFIIE_alpha PF02002.17 gi|126465816|ref|YP_001040925.1| - 1.2e-09 38.0 1.2 1.2e-09 38.0 1.2 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|126465816|ref|YP_001040925.1| - 0.023 14.2 0.2 0.046 13.2 0.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|126465816|ref|YP_001040925.1| - 0.023 14.7 0.0 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA IMS_C PF11799.8 gi|126465816|ref|YP_001040925.1| - 0.041 14.6 0.8 0.11 13.1 0.1 1.9 1 1 0 2 2 2 0 impB/mucB/samB family C-terminal domain Rad50_zn_hook PF04423.14 gi|126465816|ref|YP_001040925.1| - 0.17 11.7 5.0 0.4 10.6 0.1 3.2 3 0 0 3 3 3 0 Rad50 zinc hook motif DNA_methylase PF00145.17 gi|126465817|ref|YP_001040926.1| - 6.5e-53 180.2 0.0 2.1e-35 122.7 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|126465817|ref|YP_001040926.1| - 0.006 16.2 0.1 0.012 15.2 0.1 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|126465817|ref|YP_001040926.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain DUF2122 PF09895.9 gi|126465818|ref|YP_001040927.1| - 1.6e-31 108.8 0.2 2e-31 108.5 0.2 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Aldo_ket_red PF00248.21 gi|126465819|ref|YP_001040928.1| - 1.6e-76 257.3 0.0 1.8e-76 257.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PhoU PF01895.19 gi|126465820|ref|YP_001040929.1| - 1.3e-17 64.0 12.2 1.5e-16 60.7 1.9 3.1 2 1 1 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|126465820|ref|YP_001040929.1| - 7.6e-09 35.3 0.9 1.5e-08 34.3 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin hnRNP_Q_AcD PF18360.1 gi|126465820|ref|YP_001040929.1| - 0.036 14.0 0.3 0.5 10.4 0.0 2.7 3 0 0 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain GyrB_insert PF18053.1 gi|126465820|ref|YP_001040929.1| - 0.048 13.6 2.5 0.05 13.5 0.2 2.2 3 0 0 3 3 3 0 DNA gyrase B subunit insert domain PLC-beta_C PF08703.10 gi|126465820|ref|YP_001040929.1| - 0.086 12.8 1.0 0.12 12.4 0.2 1.5 2 0 0 2 2 2 0 PLC-beta C terminal PBP_like_2 PF12849.7 gi|126465821|ref|YP_001040930.1| - 3.8e-56 190.8 0.0 4.8e-56 190.5 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|126465821|ref|YP_001040930.1| - 3.5e-15 56.8 0.2 7.5e-15 55.7 0.2 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|126465821|ref|YP_001040930.1| - 9.1e-06 24.9 0.0 5.5e-05 22.4 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain DUF2644 PF10841.8 gi|126465821|ref|YP_001040930.1| - 0.033 14.4 0.5 0.09 13.0 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2644) BPD_transp_1 PF00528.22 gi|126465822|ref|YP_001040931.1| - 4e-09 36.5 22.4 4e-09 36.5 22.4 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Amastin PF07344.11 gi|126465822|ref|YP_001040931.1| - 0.49 10.2 5.3 0.48 10.3 3.5 1.9 1 1 1 2 2 2 0 Amastin surface glycoprotein COX7C PF02935.16 gi|126465822|ref|YP_001040931.1| - 8.6 6.7 6.4 3 8.2 2.8 2.2 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc BPD_transp_1 PF00528.22 gi|126465823|ref|YP_001040932.1| - 7.3e-12 45.4 15.8 7.3e-12 45.4 15.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3981 PF13139.6 gi|126465823|ref|YP_001040932.1| - 0.014 15.7 1.9 2 8.8 0.0 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3981) ABC_tran PF00005.27 gi|126465824|ref|YP_001040933.1| - 7.1e-37 127.0 0.0 9.6e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126465824|ref|YP_001040933.1| - 2.6e-12 47.2 0.1 1.7e-06 28.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126465824|ref|YP_001040933.1| - 6.2e-07 29.1 0.1 0.002 17.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126465824|ref|YP_001040933.1| - 2.6e-05 24.1 0.8 0.099 12.3 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|126465824|ref|YP_001040933.1| - 0.00017 21.2 0.0 0.00035 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|126465824|ref|YP_001040933.1| - 0.00082 18.6 0.0 0.002 17.4 0.0 1.5 1 1 0 1 1 1 1 NB-ARC domain AAA_23 PF13476.6 gi|126465824|ref|YP_001040933.1| - 0.0025 18.4 0.3 0.0043 17.6 0.3 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126465824|ref|YP_001040933.1| - 0.0034 17.3 0.0 0.0086 16.0 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|126465824|ref|YP_001040933.1| - 0.0051 17.1 0.0 0.013 15.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|126465824|ref|YP_001040933.1| - 0.0064 16.9 0.0 0.011 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|126465824|ref|YP_001040933.1| - 0.031 14.8 0.0 0.095 13.2 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|126465824|ref|YP_001040933.1| - 0.044 12.7 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Rad17 PF03215.15 gi|126465824|ref|YP_001040933.1| - 0.05 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|126465824|ref|YP_001040933.1| - 0.052 13.3 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|126465824|ref|YP_001040933.1| - 0.055 13.4 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Adeno_IVa2 PF02456.15 gi|126465824|ref|YP_001040933.1| - 0.059 12.2 0.3 0.15 10.8 0.1 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA PF00004.29 gi|126465824|ref|YP_001040933.1| - 0.1 13.0 0.0 1.7 9.1 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|126465824|ref|YP_001040933.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_ATPase PF09818.9 gi|126465824|ref|YP_001040933.1| - 0.16 10.8 0.0 0.72 8.6 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PhoU PF01895.19 gi|126465825|ref|YP_001040934.1| - 1.6e-31 108.6 6.5 1.7e-15 57.2 0.4 2.3 2 0 0 2 2 2 2 PhoU domain HIGH_NTase1 PF05636.11 gi|126465825|ref|YP_001040934.1| - 0.0064 15.8 0.3 0.01 15.1 0.3 1.2 1 0 0 1 1 1 1 HIGH Nucleotidyl Transferase ERO1 PF04137.15 gi|126465825|ref|YP_001040934.1| - 0.015 14.5 0.1 0.024 13.8 0.1 1.3 1 0 0 1 1 1 0 Endoplasmic Reticulum Oxidoreductin 1 (ERO1) PhoU_div PF01865.16 gi|126465825|ref|YP_001040934.1| - 0.016 14.5 4.9 0.093 12.1 0.6 3.0 1 1 1 3 3 3 0 Protein of unknown function DUF47 Cullin_Nedd8 PF10557.9 gi|126465825|ref|YP_001040934.1| - 0.042 13.9 1.0 5.6 7.1 0.0 2.8 2 2 0 2 2 2 0 Cullin protein neddylation domain RNase_J_C PF17770.1 gi|126465825|ref|YP_001040934.1| - 0.088 13.9 1.1 4 8.5 0.2 2.4 2 0 0 2 2 2 0 Ribonuclease J C-terminal domain Pyr_redox_2 PF07992.14 gi|126465826|ref|YP_001040935.1| - 2.7e-48 164.7 0.3 3.1e-48 164.5 0.3 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126465826|ref|YP_001040935.1| - 3.2e-24 85.7 0.1 3.5e-19 69.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126465826|ref|YP_001040935.1| - 9.9e-18 64.5 1.2 2.6e-12 47.1 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|126465826|ref|YP_001040935.1| - 1.1e-10 41.3 6.4 1.4e-06 27.7 1.4 3.8 3 1 2 5 5 5 3 FAD binding domain FAD_oxidored PF12831.7 gi|126465826|ref|YP_001040935.1| - 2.6e-10 40.2 0.2 1.8e-08 34.2 0.0 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|126465826|ref|YP_001040935.1| - 2e-07 30.5 1.0 7.3e-05 22.1 0.1 2.3 2 0 0 2 2 2 2 Thi4 family GIDA PF01134.22 gi|126465826|ref|YP_001040935.1| - 3.2e-07 29.8 2.1 4.9e-05 22.6 0.6 3.0 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|126465826|ref|YP_001040935.1| - 1.1e-06 27.7 0.9 0.00047 19.0 0.1 3.1 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|126465826|ref|YP_001040935.1| - 5.9e-06 26.1 3.1 0.0022 17.7 1.3 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|126465826|ref|YP_001040935.1| - 3.7e-05 23.1 1.6 0.0047 16.2 1.2 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.6 gi|126465826|ref|YP_001040935.1| - 0.00021 21.7 0.3 0.27 11.7 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|126465826|ref|YP_001040935.1| - 0.00031 20.9 1.2 0.017 15.4 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain VanW PF04294.13 gi|126465826|ref|YP_001040935.1| - 0.00084 19.0 0.0 0.0043 16.7 0.0 2.0 2 0 0 2 2 2 1 VanW like protein Trp_halogenase PF04820.14 gi|126465826|ref|YP_001040935.1| - 0.0022 16.9 1.6 0.079 11.8 0.4 2.1 2 0 0 2 2 2 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|126465826|ref|YP_001040935.1| - 0.0036 16.6 0.3 0.5 9.6 0.1 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|126465826|ref|YP_001040935.1| - 0.0048 16.1 0.8 8.5 5.4 0.1 3.1 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) PALP PF00291.25 gi|126465826|ref|YP_001040935.1| - 0.0067 15.9 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme Lycopene_cycl PF05834.12 gi|126465826|ref|YP_001040935.1| - 0.03 13.4 0.8 0.048 12.7 0.3 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|126465826|ref|YP_001040935.1| - 0.15 12.1 0.3 29 4.6 0.2 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding AdoHcyase PF05221.17 gi|126465827|ref|YP_001040936.1| - 1.5e-70 237.7 0.0 1.4e-41 142.6 0.2 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|126465827|ref|YP_001040936.1| - 3.5e-54 183.3 0.2 5.6e-54 182.6 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|126465827|ref|YP_001040936.1| - 9.4e-08 31.6 0.2 1.8e-07 30.7 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|126465827|ref|YP_001040936.1| - 9.8e-06 25.2 0.3 1.9e-05 24.3 0.1 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CdhD PF03599.16 gi|126465827|ref|YP_001040936.1| - 0.014 14.1 0.2 0.048 12.4 0.2 1.7 1 1 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit THF_DHG_CYH_C PF02882.19 gi|126465827|ref|YP_001040936.1| - 0.17 11.2 1.4 1.7 7.9 1.4 2.2 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AlaDh_PNT_C PF01262.21 gi|126465827|ref|YP_001040936.1| - 0.59 9.4 4.4 4.3 6.6 4.4 2.2 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2582 PF10771.9 gi|126465828|ref|YP_001040937.1| - 0.087 13.0 0.1 0.16 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) HTH_9 PF08221.11 gi|126465828|ref|YP_001040937.1| - 0.099 12.8 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Endonuclease_5 PF04493.14 gi|126465829|ref|YP_001040938.1| - 3.1e-51 173.9 0.1 3.7e-51 173.6 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V Proteasome PF00227.26 gi|126465830|ref|YP_001040939.1| - 1.4e-54 184.5 0.0 1.6e-54 184.3 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit TF_Zn_Ribbon PF08271.12 gi|126465831|ref|YP_001040940.1| - 6.9e-12 44.7 1.7 1.6e-11 43.5 1.7 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|126465831|ref|YP_001040940.1| - 0.0005 19.7 1.0 0.00076 19.1 1.0 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|126465831|ref|YP_001040940.1| - 0.025 14.5 0.5 0.069 13.1 0.5 1.8 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|126465831|ref|YP_001040940.1| - 0.05 13.3 1.1 0.11 12.3 1.1 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.12 gi|126465831|ref|YP_001040940.1| - 0.085 13.0 1.0 0.13 12.4 1.0 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.6 gi|126465831|ref|YP_001040940.1| - 0.13 12.7 0.2 0.45 10.9 0.3 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.6 gi|126465831|ref|YP_001040940.1| - 0.16 11.9 1.0 0.3 11.0 1.0 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Phage_AlpA PF05930.12 gi|126465831|ref|YP_001040940.1| - 0.18 11.7 1.3 1.4 8.8 0.4 2.6 2 1 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) Zn_Tnp_IS1595 PF12760.7 gi|126465831|ref|YP_001040940.1| - 0.3 11.1 0.9 0.85 9.7 1.0 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|126465831|ref|YP_001040940.1| - 0.38 10.2 4.2 2.4 7.7 4.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|126465831|ref|YP_001040940.1| - 1.3 9.3 6.3 5.4 7.4 6.3 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase NOG1 PF06858.14 gi|126465832|ref|YP_001040941.1| - 1.3e-19 69.7 0.3 3.3e-19 68.4 0.3 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|126465832|ref|YP_001040941.1| - 1.7e-19 70.0 0.0 4.5e-19 68.6 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|126465832|ref|YP_001040941.1| - 3.3e-11 42.9 0.0 5.5e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B NOG1_N PF17835.1 gi|126465832|ref|YP_001040941.1| - 2e-08 34.4 3.1 2.2e-08 34.2 1.6 1.8 1 1 1 2 2 2 1 NOG1 N-terminal helical domain MMR_HSR1_Xtn PF16897.5 gi|126465832|ref|YP_001040941.1| - 0.00015 21.7 0.6 0.00038 20.4 0.2 1.9 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|126465832|ref|YP_001040941.1| - 0.0002 21.3 6.0 0.21 11.5 0.2 3.1 3 1 0 3 3 3 2 RsgA GTPase SRPRB PF09439.10 gi|126465832|ref|YP_001040941.1| - 0.00031 20.2 0.5 0.00075 19.0 0.1 1.8 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|126465832|ref|YP_001040941.1| - 0.0013 18.3 1.4 0.7 9.4 1.4 3.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|126465832|ref|YP_001040941.1| - 0.0013 18.8 0.3 0.51 10.4 0.0 2.7 1 1 1 2 2 2 1 Dynamin family AAA_14 PF13173.6 gi|126465832|ref|YP_001040941.1| - 0.0098 15.9 0.4 0.04 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 gi|126465832|ref|YP_001040941.1| - 0.01 16.0 0.7 2.6 8.3 0.0 2.8 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|126465832|ref|YP_001040941.1| - 0.015 14.9 1.5 0.099 12.2 0.2 2.4 2 1 0 2 2 2 0 Ras family F-actin_cap_A PF01267.17 gi|126465832|ref|YP_001040941.1| - 0.052 13.0 0.1 0.096 12.1 0.1 1.3 1 0 0 1 1 1 0 F-actin capping protein alpha subunit AAA_18 PF13238.6 gi|126465832|ref|YP_001040941.1| - 0.053 14.1 0.1 0.12 12.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|126465832|ref|YP_001040941.1| - 0.058 13.3 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|126465832|ref|YP_001040941.1| - 0.063 12.5 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|126465832|ref|YP_001040941.1| - 0.11 12.7 0.0 0.28 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126465832|ref|YP_001040941.1| - 0.21 11.9 0.0 0.41 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RTC PF01137.21 gi|126465833|ref|YP_001040942.1| - 3.2e-78 262.0 0.0 3.9e-78 261.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|126465833|ref|YP_001040942.1| - 1.1e-22 80.4 0.1 1.9e-22 79.7 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_like PF01467.26 gi|126465834|ref|YP_001040943.1| - 2.6e-13 50.4 0.0 3.8e-13 49.8 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase-like Beta-Casp PF10996.8 gi|126465835|ref|YP_001040944.1| - 1.1e-22 80.3 0.0 2.7e-22 79.2 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|126465835|ref|YP_001040944.1| - 1.6e-22 79.2 1.9 1.6e-22 79.2 1.9 2.9 3 0 0 3 3 3 1 KH domain RMMBL PF07521.12 gi|126465835|ref|YP_001040944.1| - 4e-16 58.7 0.1 1.2e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|126465835|ref|YP_001040944.1| - 8.1e-15 54.8 0.0 1.3e-13 50.8 0.0 2.3 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|126465835|ref|YP_001040944.1| - 1.2e-11 44.5 0.1 2.2e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|126465835|ref|YP_001040944.1| - 1.7e-11 44.5 0.3 9.2e-08 32.3 0.1 2.7 3 0 0 3 3 3 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|126465835|ref|YP_001040944.1| - 0.0064 16.4 0.0 0.018 14.9 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF2220 PF09983.9 gi|126465835|ref|YP_001040944.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria C-term(DUF2220) Proteasome PF00227.26 gi|126465836|ref|YP_001040945.1| - 3.7e-56 189.6 0.2 4.4e-56 189.4 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit Fe-ADH_2 PF13685.6 gi|126465837|ref|YP_001040946.1| - 7e-76 255.2 0.2 8.7e-76 254.9 0.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|126465837|ref|YP_001040946.1| - 1e-23 83.7 1.2 9.8e-23 80.5 1.2 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|126465837|ref|YP_001040946.1| - 4e-09 36.0 0.2 7.7e-06 25.3 0.0 3.5 2 2 1 3 3 3 3 3-dehydroquinate synthase PFK PF00365.20 gi|126465837|ref|YP_001040946.1| - 0.013 14.9 0.1 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 Phosphofructokinase FKBP_C PF00254.28 gi|126465838|ref|YP_001040947.1| - 1.5e-11 44.4 0.0 1.3e-10 41.4 0.0 2.3 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|126465838|ref|YP_001040947.1| - 8.4e-07 29.0 2.6 2.5e-06 27.5 2.6 1.8 1 0 0 1 1 1 1 FKBP26_C-terminal MS_channel PF00924.18 gi|126465838|ref|YP_001040947.1| - 0.086 12.4 1.4 0.62 9.6 0.7 2.4 2 0 0 2 2 2 0 Mechanosensitive ion channel DUF3553 PF12073.8 gi|126465838|ref|YP_001040947.1| - 0.11 12.2 0.5 0.28 10.9 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) MacB_PCD PF12704.7 gi|126465839|ref|YP_001040948.1| - 0.011 16.1 0.6 0.012 15.9 0.6 1.2 1 0 0 1 1 1 0 MacB-like periplasmic core domain Phage_holin_2_3 PF16080.5 gi|126465839|ref|YP_001040948.1| - 0.032 14.0 0.7 0.032 14.0 0.7 1.6 2 0 0 2 2 2 0 Bacteriophage holin family HP1 Deltameth_res PF16020.5 gi|126465839|ref|YP_001040948.1| - 0.032 14.1 4.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 Deltamethrin resistance PsbN PF02468.15 gi|126465839|ref|YP_001040948.1| - 0.5 10.3 4.1 0.72 9.8 0.0 2.1 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) DUF1947 PF09183.10 gi|126465840|ref|YP_001040949.1| - 3.4e-23 81.7 1.7 3.6e-23 81.6 0.6 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|126465840|ref|YP_001040949.1| - 5.7e-16 58.2 4.6 6.1e-16 58.2 1.5 2.0 2 0 0 2 2 2 1 PUA domain Pre-PUA PF17832.1 gi|126465840|ref|YP_001040949.1| - 0.0015 19.2 0.3 0.0062 17.2 0.3 1.8 1 1 0 1 1 1 1 Pre-PUA-like domain UPF0113 PF03657.13 gi|126465840|ref|YP_001040949.1| - 0.045 14.0 1.5 0.098 12.9 0.2 1.9 2 0 0 2 2 2 0 UPF0113 PUA domain LSM PF01423.22 gi|126465841|ref|YP_001040950.1| - 5.6e-24 83.6 0.4 6.1e-24 83.5 0.4 1.0 1 0 0 1 1 1 1 LSM domain DUF150_C PF17384.2 gi|126465841|ref|YP_001040950.1| - 0.0063 16.6 0.3 0.0096 16.0 0.3 1.4 1 1 0 1 1 1 1 RimP C-terminal SH3 domain SM-ATX PF14438.6 gi|126465841|ref|YP_001040950.1| - 0.062 13.5 0.0 0.074 13.2 0.0 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|126465842|ref|YP_001040951.1| - 1.7e-24 85.7 11.7 1.9e-24 85.6 11.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e MraY_sig1 PF10555.9 gi|126465842|ref|YP_001040951.1| - 0.24 11.0 1.3 0.41 10.3 1.3 1.4 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Cpta_toxin PF07254.12 gi|126465843|ref|YP_001040952.1| - 2.1 8.3 5.2 0.97 9.4 1.6 2.3 2 0 0 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system Phosphodiest PF01663.22 gi|126465844|ref|YP_001040953.1| - 1.1e-21 77.8 0.0 7.7e-21 75.1 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|126465844|ref|YP_001040953.1| - 0.0018 18.4 0.2 0.0029 17.7 0.2 1.3 1 0 0 1 1 1 1 PglZ domain Glycos_transf_1 PF00534.20 gi|126465845|ref|YP_001040954.1| - 3.9e-23 81.8 0.2 6.9e-23 81.0 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126465845|ref|YP_001040954.1| - 6.6e-13 49.2 0.0 1.2e-12 48.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126465845|ref|YP_001040954.1| - 0.00013 22.0 0.0 0.00036 20.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126465845|ref|YP_001040954.1| - 0.041 14.3 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Phosphodiest PF01663.22 gi|126465846|ref|YP_001040955.1| - 6.7e-20 72.0 0.0 1.2e-19 71.1 0.0 1.6 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|126465846|ref|YP_001040955.1| - 0.014 14.8 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily Sulfatase PF00884.23 gi|126465846|ref|YP_001040955.1| - 0.04 13.3 0.0 0.095 12.1 0.0 1.5 2 0 0 2 2 2 0 Sulfatase Glycos_transf_1 PF00534.20 gi|126465847|ref|YP_001040956.1| - 1.6e-20 73.3 0.1 3.5e-20 72.2 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126465847|ref|YP_001040956.1| - 1.1e-10 42.1 0.0 1.6e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126465847|ref|YP_001040956.1| - 0.0011 19.0 0.3 0.0045 17.0 0.0 2.2 2 2 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|126465847|ref|YP_001040956.1| - 0.0025 18.2 0.0 0.0041 17.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126465848|ref|YP_001040957.1| - 2.6e-06 27.9 0.0 4.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126465848|ref|YP_001040957.1| - 7.8e-05 22.7 0.0 0.00015 21.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|126465848|ref|YP_001040957.1| - 0.011 15.3 0.0 0.082 12.4 0.0 2.1 1 1 1 2 2 2 0 Glycosyl transferases group 1 Epimerase_2 PF02350.19 gi|126465848|ref|YP_001040957.1| - 0.066 12.1 0.0 0.084 11.7 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Nitroreductase PF00881.24 gi|126465849|ref|YP_001040958.1| - 5.1e-27 95.0 0.0 6e-27 94.8 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|126465849|ref|YP_001040958.1| - 7.6e-10 38.7 0.0 3.2e-05 23.6 0.0 2.2 1 1 1 2 2 2 2 Putative TM nitroreductase DUF432 PF04254.13 gi|126465850|ref|YP_001040959.1| - 2.2e-35 121.5 1.1 3.4e-35 120.9 1.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.18 gi|126465851|ref|YP_001040960.1| - 1.1e-58 198.2 2.1 1.1e-58 198.2 2.1 1.4 2 0 0 2 2 2 1 Mechanosensitive ion channel AsnC_trans_reg PF01037.21 gi|126465852|ref|YP_001040961.1| - 3.4e-15 55.7 0.6 3.8e-15 55.6 0.6 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|126465852|ref|YP_001040961.1| - 0.0091 16.0 0.6 0.014 15.4 0.6 1.3 1 1 0 1 1 1 1 NapD protein Ribo_biogen_C PF04034.13 gi|126465853|ref|YP_001040962.1| - 1.8e-39 134.4 0.0 2.3e-39 134.0 0.0 1.2 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|126465853|ref|YP_001040962.1| - 0.054 13.3 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI HTH_23 PF13384.6 gi|126465854|ref|YP_001040963.1| - 8.1e-11 41.4 0.2 3.4e-06 26.7 0.1 2.1 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 gi|126465854|ref|YP_001040963.1| - 4e-08 33.3 0.0 0.011 15.9 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_38 PF13936.6 gi|126465854|ref|YP_001040963.1| - 4e-07 29.7 0.4 1.3e-05 24.9 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|126465854|ref|YP_001040963.1| - 1.2e-06 28.5 7.4 0.0005 20.1 2.2 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain of resolvase CENP-B_N PF04218.13 gi|126465854|ref|YP_001040963.1| - 0.00012 21.6 1.0 0.028 14.0 0.0 2.5 2 2 0 2 2 2 2 CENP-B N-terminal DNA-binding domain HTH_Tnp_1 PF01527.20 gi|126465854|ref|YP_001040963.1| - 0.00017 21.8 0.0 0.035 14.4 0.0 2.1 1 1 1 2 2 2 1 Transposase HTH_40 PF14493.6 gi|126465854|ref|YP_001040963.1| - 0.0012 19.3 0.7 0.063 13.7 0.0 2.5 1 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|126465854|ref|YP_001040963.1| - 0.0015 18.5 0.0 0.076 13.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix TrmB PF01978.19 gi|126465854|ref|YP_001040963.1| - 0.0029 17.5 0.3 0.038 13.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_35 PF13693.6 gi|126465854|ref|YP_001040963.1| - 0.0032 17.5 0.0 0.0063 16.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|126465854|ref|YP_001040963.1| - 0.0087 15.8 0.0 0.17 11.7 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain Recombinase PF07508.13 gi|126465854|ref|YP_001040963.1| - 0.0092 16.4 0.5 0.62 10.5 0.1 2.4 2 0 0 2 2 2 1 Recombinase HTH_IclR PF09339.10 gi|126465854|ref|YP_001040963.1| - 0.021 14.6 0.0 0.059 13.2 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|126465854|ref|YP_001040963.1| - 0.035 14.1 6.9 0.61 10.1 0.3 2.1 1 1 1 2 2 2 0 Transposase GCR1_C PF12550.8 gi|126465854|ref|YP_001040963.1| - 0.036 14.4 4.9 0.068 13.5 4.9 1.5 1 1 0 1 1 1 0 Transcriptional activator of glycolytic enzymes Sigma70_r4_2 PF08281.12 gi|126465854|ref|YP_001040963.1| - 0.046 13.4 0.0 0.36 10.5 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 UPF0175 PF03683.13 gi|126465854|ref|YP_001040963.1| - 0.063 13.0 0.1 2.2 8.0 0.0 2.5 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0175) HTH_psq PF05225.16 gi|126465854|ref|YP_001040963.1| - 0.091 12.5 0.5 0.27 11.0 0.2 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_50 PF18024.1 gi|126465854|ref|YP_001040963.1| - 1.2 8.8 6.3 0.16 11.6 1.1 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain DUF72 PF01904.18 gi|126465856|ref|YP_001040965.1| - 5.7e-29 101.8 0.1 7.3e-29 101.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|126465856|ref|YP_001040965.1| - 0.02 14.4 0.0 0.33 10.4 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel ACT PF01842.25 gi|126465857|ref|YP_001040966.1| - 6e-09 35.5 0.2 1.4e-08 34.3 0.2 1.8 1 1 0 1 1 1 1 ACT domain MazE_antitoxin PF04014.18 gi|126465857|ref|YP_001040966.1| - 7.1e-08 32.2 0.9 1.5e-07 31.2 0.9 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ACT_4 PF13291.6 gi|126465857|ref|YP_001040966.1| - 2e-05 25.1 0.0 4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 ACT domain MraZ PF02381.18 gi|126465857|ref|YP_001040966.1| - 0.0021 18.0 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like ACT_6 PF13740.6 gi|126465857|ref|YP_001040966.1| - 0.016 15.1 0.1 0.041 13.9 0.1 1.8 1 1 1 2 2 2 0 ACT domain ACT_7 PF13840.6 gi|126465857|ref|YP_001040966.1| - 0.057 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 ACT domain PrlF_antitoxin PF15937.5 gi|126465857|ref|YP_001040966.1| - 0.074 13.5 0.1 0.15 12.5 0.1 1.6 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin DUF4089 PF13318.6 gi|126465857|ref|YP_001040966.1| - 0.16 12.5 0.1 0.29 11.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4089) Pribosyltran PF00156.27 gi|126465858|ref|YP_001040967.1| - 7.5e-08 32.0 0.1 1.3e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_49 PF18010.1 gi|126465858|ref|YP_001040967.1| - 0.00081 19.2 0.0 0.002 17.9 0.0 1.7 1 0 0 1 1 1 1 Cry35Ab1 HTH C-terminal domain UPRTase PF14681.6 gi|126465858|ref|YP_001040967.1| - 0.0046 16.4 0.0 0.008 15.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase ERCC3_RAD25_C PF16203.5 gi|126465860|ref|YP_001040969.1| - 1e-28 100.3 0.1 2.7e-28 98.8 0.1 1.6 1 1 1 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|126465860|ref|YP_001040969.1| - 1.6e-20 73.8 0.3 1e-19 71.2 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|126465860|ref|YP_001040969.1| - 2.1e-19 69.9 0.1 5.4e-19 68.6 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126465860|ref|YP_001040969.1| - 3.6e-08 33.4 0.2 2.3e-07 30.8 0.0 2.3 2 2 0 2 2 2 1 DEAD/DEAH box helicase IDH PF03971.14 gi|126465860|ref|YP_001040969.1| - 0.0053 15.3 0.0 0.0082 14.6 0.0 1.2 1 0 0 1 1 1 1 Monomeric isocitrate dehydrogenase AAA_22 PF13401.6 gi|126465860|ref|YP_001040969.1| - 0.12 12.6 0.3 2.5 8.4 0.3 3.0 2 1 0 2 2 2 0 AAA domain TPR_15 PF13429.6 gi|126465860|ref|YP_001040969.1| - 0.13 11.5 0.2 0.23 10.6 0.2 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat RNA_pol_inhib PF16857.5 gi|126465860|ref|YP_001040969.1| - 0.63 9.9 2.6 8.9 6.2 0.1 3.0 2 1 1 3 3 3 0 RNA polymerase inhibitor DUF460 PF04312.13 gi|126465862|ref|YP_001040971.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF460) HTH_17 PF12728.7 gi|126465863|ref|YP_001040972.1| - 0.026 14.7 0.3 0.41 10.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|126465863|ref|YP_001040972.1| - 0.082 13.1 0.3 0.23 11.7 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TrmB PF01978.19 gi|126465863|ref|YP_001040972.1| - 0.094 12.6 0.1 0.16 11.8 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Alba PF01918.21 gi|126465864|ref|YP_001040973.1| - 2.6e-21 75.2 1.0 3.4e-21 74.8 1.0 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|126465864|ref|YP_001040973.1| - 0.05 13.6 0.3 0.068 13.1 0.2 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.20 gi|126465865|ref|YP_001040974.1| - 1.1e-71 242.1 0.0 2e-71 241.2 0.0 1.5 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|126465865|ref|YP_001040974.1| - 6.2e-23 81.0 0.0 2.7e-22 78.9 0.0 2.2 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|126465865|ref|YP_001040974.1| - 3.2e-18 66.1 0.1 9.7e-18 64.5 0.1 1.8 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|126465865|ref|YP_001040974.1| - 2e-09 37.7 0.1 8.8e-09 35.6 0.0 2.1 2 0 0 2 2 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|126465865|ref|YP_001040974.1| - 1.5e-06 28.5 0.7 0.0026 18.1 0.2 4.1 3 1 0 3 3 3 1 Helicase conserved C-terminal domain AAA_30 PF13604.6 gi|126465865|ref|YP_001040974.1| - 3.9e-05 23.5 0.0 7.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|126465865|ref|YP_001040974.1| - 0.00012 22.4 0.0 0.00038 20.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|126465865|ref|YP_001040974.1| - 0.00054 20.3 0.1 0.0024 18.2 0.0 2.2 2 0 0 2 2 1 1 AAA domain zf_Rg PF17915.1 gi|126465865|ref|YP_001040974.1| - 0.0067 15.8 0.8 0.012 15.0 0.1 1.8 2 0 0 2 2 2 1 Reverse gyrase zinc finger Toprim_4 PF13662.6 gi|126465865|ref|YP_001040974.1| - 0.012 16.1 0.0 0.035 14.6 0.0 1.8 1 0 0 1 1 1 0 Toprim domain AAA_25 PF13481.6 gi|126465865|ref|YP_001040974.1| - 0.012 15.2 0.1 0.042 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|126465865|ref|YP_001040974.1| - 0.017 14.9 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|126465865|ref|YP_001040974.1| - 0.025 13.9 0.1 0.056 12.8 0.1 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain Herpes_ori_bp PF02399.15 gi|126465865|ref|YP_001040974.1| - 0.036 12.1 0.2 0.22 9.5 0.0 2.2 2 0 0 2 2 2 0 Origin of replication binding protein OrfB_Zn_ribbon PF07282.11 gi|126465865|ref|YP_001040974.1| - 0.055 13.4 0.9 0.35 10.8 0.5 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|126465865|ref|YP_001040974.1| - 0.073 13.1 1.6 0.13 12.3 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ATPase PF06745.13 gi|126465865|ref|YP_001040974.1| - 0.11 11.8 1.1 5.9 6.2 0.0 2.5 2 0 0 2 2 2 0 KaiC Flavi_DEAD PF07652.14 gi|126465865|ref|YP_001040974.1| - 0.11 12.5 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Flavivirus DEAD domain RecR PF02132.15 gi|126465865|ref|YP_001040974.1| - 1.1 8.9 3.1 0.77 9.4 0.4 2.3 2 0 0 2 2 2 0 RecR protein DUF3896 PF13035.6 gi|126465865|ref|YP_001040974.1| - 1.2 9.4 5.6 1.9 8.7 0.2 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3896) Prok-RING_1 PF14446.6 gi|126465865|ref|YP_001040974.1| - 4.2 7.4 6.2 2.9 7.9 0.6 2.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Alba PF01918.21 gi|126465866|ref|YP_001040975.1| - 4.7e-10 39.1 0.0 6.1e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Alba MgtC PF02308.16 gi|126465867|ref|YP_001040976.1| - 8e-05 23.0 0.3 9e-05 22.8 0.3 1.1 1 0 0 1 1 1 1 MgtC family DUF2104 PF09877.9 gi|126465867|ref|YP_001040976.1| - 0.032 14.5 1.6 4 7.7 0.3 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2104) DUF5316 PF17247.2 gi|126465867|ref|YP_001040976.1| - 0.054 13.5 0.2 0.073 13.1 0.2 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5316) DUF2208 PF09973.9 gi|126465869|ref|YP_001040978.1| - 9.2e-66 221.8 19.3 1e-65 221.6 19.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Cpta_toxin PF07254.12 gi|126465869|ref|YP_001040978.1| - 10 6.1 6.9 2.1 8.3 2.4 2.0 1 1 1 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system YHS PF04945.13 gi|126465870|ref|YP_001040979.1| - 0.019 15.1 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 YHS domain FYVE PF01363.21 gi|126465870|ref|YP_001040979.1| - 0.057 13.6 0.0 0.061 13.5 0.0 1.2 1 1 0 1 1 1 0 FYVE zinc finger Ribosomal_L24e PF01246.20 gi|126465870|ref|YP_001040979.1| - 0.098 12.9 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L24e HIT PF01230.23 gi|126465871|ref|YP_001040980.1| - 4.8e-17 62.5 0.0 6.6e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|126465871|ref|YP_001040980.1| - 2e-09 38.0 0.0 2.7e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|126465871|ref|YP_001040980.1| - 6.7e-08 32.4 0.0 1.2e-07 31.6 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 ODR4-like PF14778.6 gi|126465872|ref|YP_001040981.1| - 0.052 12.5 0.1 0.064 12.2 0.1 1.0 1 0 0 1 1 1 0 Olfactory receptor 4-like Arc_PepC_II PF06847.11 gi|126465873|ref|YP_001040982.1| - 4.2e-25 88.1 0.3 4.2e-25 88.1 0.3 2.2 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|126465873|ref|YP_001040982.1| - 0.00016 22.1 12.5 0.00016 22.1 12.5 2.0 2 0 0 2 2 2 1 Type IV leader peptidase family VASt PF16016.5 gi|126465873|ref|YP_001040982.1| - 0.039 14.3 0.0 0.056 13.8 0.0 1.2 1 0 0 1 1 1 0 VAD1 Analog of StAR-related lipid transfer domain Rad51 PF08423.11 gi|126465874|ref|YP_001040983.1| - 7.4e-96 320.3 0.0 9.1e-96 320.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|126465874|ref|YP_001040983.1| - 9e-16 58.1 0.0 1.2e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|126465874|ref|YP_001040983.1| - 1.4e-11 44.2 0.0 2.2e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|126465874|ref|YP_001040983.1| - 1e-10 41.5 0.0 1.7e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|126465874|ref|YP_001040983.1| - 8.5e-07 29.5 0.1 2.7e-06 27.9 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|126465874|ref|YP_001040983.1| - 0.00047 20.3 0.0 0.002 18.4 0.0 2.1 2 0 0 2 2 2 1 IMS family HHH motif Cdd1 PF11731.8 gi|126465874|ref|YP_001040983.1| - 0.00064 19.9 0.0 0.0012 19.0 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus HTH_31 PF13560.6 gi|126465874|ref|YP_001040983.1| - 0.002 18.4 0.3 0.12 12.8 0.0 3.2 3 0 0 3 3 3 1 Helix-turn-helix domain AAA_18 PF13238.6 gi|126465874|ref|YP_001040983.1| - 0.038 14.5 0.0 0.15 12.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|126465874|ref|YP_001040983.1| - 0.049 13.9 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain BAF PF02961.14 gi|126465874|ref|YP_001040983.1| - 0.08 13.4 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 Barrier to autointegration factor HHH_8 PF14716.6 gi|126465874|ref|YP_001040983.1| - 0.095 13.1 0.1 0.33 11.4 0.1 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain PAXNEB PF05625.11 gi|126465874|ref|YP_001040983.1| - 0.12 11.5 0.0 5.8 5.9 0.1 2.1 2 0 0 2 2 2 0 PAXNEB protein DNA_pol_lambd_f PF10391.9 gi|126465874|ref|YP_001040983.1| - 0.15 11.9 0.0 0.64 9.9 0.0 2.2 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda AAA_24 PF13479.6 gi|126465874|ref|YP_001040983.1| - 0.16 11.7 0.0 0.38 10.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain tRNA-Thr_ED PF08915.11 gi|126465876|ref|YP_001040985.1| - 4.8e-50 169.2 0.1 9.8e-50 168.2 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|126465876|ref|YP_001040985.1| - 1.9e-26 92.1 1.7 3.4e-26 91.2 1.7 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|126465876|ref|YP_001040985.1| - 2.5e-16 60.2 0.6 6.7e-16 58.8 0.3 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ASCH PF04266.14 gi|126465877|ref|YP_001040986.1| - 2.6e-16 60.1 0.3 4.3e-16 59.4 0.3 1.3 1 0 0 1 1 1 1 ASCH domain GntR PF00392.21 gi|126465877|ref|YP_001040986.1| - 0.003 17.2 0.1 0.0093 15.6 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TTRAP PF14203.6 gi|126465877|ref|YP_001040986.1| - 0.0031 17.4 0.3 0.013 15.5 0.0 2.2 3 0 0 3 3 3 1 Putative tranposon-transfer assisting protein Rrf2 PF02082.20 gi|126465877|ref|YP_001040986.1| - 0.057 13.8 0.4 0.2 12.0 0.4 2.0 1 1 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|126465877|ref|YP_001040986.1| - 1.1 9.1 5.7 0.49 10.3 0.3 2.6 2 1 0 2 2 2 0 TFIIE alpha subunit TP6A_N PF04406.14 gi|126465878|ref|YP_001040987.1| - 3.8e-23 81.2 0.2 7.3e-23 80.3 0.2 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Vac_Fusion PF02346.16 gi|126465878|ref|YP_001040987.1| - 0.08 12.6 0.3 0.08 12.6 0.3 2.0 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 DUF2399 PF09664.10 gi|126465878|ref|YP_001040987.1| - 0.085 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) GTP_EFTU_D4 PF14578.6 gi|126465878|ref|YP_001040987.1| - 0.13 12.2 0.1 0.3 11.0 0.1 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Topo-VIb_trans PF09239.11 gi|126465879|ref|YP_001040988.1| - 3.9e-64 215.3 0.1 7e-64 214.4 0.1 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|126465879|ref|YP_001040988.1| - 8.4e-14 52.0 0.0 4.4e-13 49.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|126465879|ref|YP_001040988.1| - 2.3e-10 40.4 0.0 4.6e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|126465879|ref|YP_001040988.1| - 0.00044 19.1 0.0 0.00044 19.1 0.0 1.5 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) pRN1_helical PF13010.6 gi|126465879|ref|YP_001040988.1| - 0.081 12.9 1.7 0.32 10.9 0.0 2.5 3 0 0 3 3 3 0 Primase helical domain Pilin_N PF07790.11 gi|126465880|ref|YP_001040989.1| - 1.6 9.7 7.0 29 5.7 7.0 2.2 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal T2SSE PF00437.20 gi|126465881|ref|YP_001040990.1| - 4.2e-35 121.1 0.0 1.1e-34 119.8 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|126465881|ref|YP_001040990.1| - 0.0098 15.6 0.1 0.021 14.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|126465881|ref|YP_001040990.1| - 0.015 15.5 0.2 0.037 14.3 0.2 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126465881|ref|YP_001040990.1| - 0.13 12.6 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RtcB PF01139.17 gi|126465883|ref|YP_001040992.1| - 4.9e-167 556.3 0.0 5.6e-167 556.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB tRNA-synt_His PF13393.6 gi|126465884|ref|YP_001040993.1| - 4.4e-57 193.7 0.0 5.3e-57 193.4 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|126465884|ref|YP_001040993.1| - 8e-14 52.0 0.1 2e-13 50.7 0.1 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|126465884|ref|YP_001040993.1| - 3.7e-09 36.6 0.5 2.7e-08 33.8 0.1 2.4 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|126465884|ref|YP_001040993.1| - 0.0001 21.9 0.1 0.00073 19.1 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Ribosomal_L22 PF00237.19 gi|126465884|ref|YP_001040993.1| - 0.002 18.3 0.1 0.0056 16.9 0.1 1.8 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e LMP PF04778.12 gi|126465884|ref|YP_001040993.1| - 0.012 15.5 1.0 0.012 15.5 1.0 2.2 2 0 0 2 2 2 0 LMP repeated region tRNA-synt_2 PF00152.20 gi|126465884|ref|YP_001040993.1| - 2.2 7.3 8.2 0.8 8.7 0.4 3.2 3 1 0 3 3 3 0 tRNA synthetases class II (D, K and N) NYD-SP28_assoc PF14775.6 gi|126465884|ref|YP_001040993.1| - 3.7 7.7 9.4 4.8 7.4 1.2 3.2 3 0 0 3 3 3 0 Sperm tail C-terminal domain tRNA_int_endo_N PF02778.14 gi|126465885|ref|YP_001040994.1| - 3.8e-12 45.7 0.2 7.5e-12 44.7 0.2 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_endo PF01974.17 gi|126465885|ref|YP_001040994.1| - 3.8e-11 42.9 0.1 7.1e-11 42.0 0.1 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain IF-2B PF01008.17 gi|126465886|ref|YP_001040995.1| - 3.6e-85 285.6 0.6 4.2e-85 285.4 0.6 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF2101 PF09874.9 gi|126465886|ref|YP_001040995.1| - 0.12 12.1 0.1 0.24 11.1 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) ProRS-C_2 PF09181.10 gi|126465886|ref|YP_001040995.1| - 0.44 10.7 3.3 20 5.4 0.0 3.1 3 1 0 3 3 3 0 Prolyl-tRNA synthetase, C-terminal Rib_5-P_isom_A PF06026.14 gi|126465887|ref|YP_001040996.1| - 9.1e-49 165.4 0.0 1.1e-48 165.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Sugar-bind PF04198.13 gi|126465887|ref|YP_001040996.1| - 0.16 11.1 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain SWIM PF04434.17 gi|126465888|ref|YP_001040997.1| - 0.025 14.2 0.1 0.042 13.5 0.1 1.3 1 0 0 1 1 1 0 SWIM zinc finger Elf1 PF05129.13 gi|126465889|ref|YP_001040998.1| - 5.7e-22 77.6 0.0 9.1e-22 76.9 0.0 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ZPR1 PF03367.13 gi|126465889|ref|YP_001040998.1| - 0.00051 19.9 0.4 0.00074 19.4 0.4 1.3 1 0 0 1 1 1 1 ZPR1 zinc-finger domain TF_Zn_Ribbon PF08271.12 gi|126465889|ref|YP_001040998.1| - 0.0012 18.3 1.5 0.0044 16.5 1.5 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|126465889|ref|YP_001040998.1| - 0.025 14.9 0.2 0.036 14.4 0.2 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|126465889|ref|YP_001040998.1| - 0.029 14.6 0.9 0.43 10.8 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|126465889|ref|YP_001040998.1| - 0.03 14.2 0.1 0.06 13.3 0.1 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|126465889|ref|YP_001040998.1| - 0.043 13.9 1.4 0.57 10.3 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain T4_baseplate PF12322.8 gi|126465889|ref|YP_001040998.1| - 0.057 12.9 0.0 0.08 12.4 0.0 1.2 1 0 0 1 1 1 0 T4 bacteriophage base plate protein Rubredoxin PF00301.20 gi|126465889|ref|YP_001040998.1| - 0.063 13.3 0.4 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.6 gi|126465889|ref|YP_001040998.1| - 0.067 13.7 1.1 0.11 12.9 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_10 PF10058.9 gi|126465889|ref|YP_001040998.1| - 0.08 12.7 0.2 3.5 7.4 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF678 PF05077.12 gi|126465889|ref|YP_001040998.1| - 0.089 12.9 0.2 0.14 12.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF678) DUF1610 PF07754.11 gi|126465889|ref|YP_001040998.1| - 0.12 12.4 0.9 0.12 12.4 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|126465889|ref|YP_001040998.1| - 0.24 10.9 3.2 0.31 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|126465889|ref|YP_001040998.1| - 0.26 11.3 1.4 0.6 10.1 1.5 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|126465889|ref|YP_001040998.1| - 0.33 11.7 0.0 0.33 11.7 0.0 2.5 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|126465889|ref|YP_001040998.1| - 1.6 8.7 5.5 2.4 8.2 1.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain PcrB PF01884.17 gi|126465890|ref|YP_001040999.1| - 2.4e-51 174.4 0.1 3.1e-51 174.0 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|126465890|ref|YP_001040999.1| - 0.00032 20.2 0.0 0.00046 19.7 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DpaA_N PF16924.5 gi|126465890|ref|YP_001040999.1| - 0.012 15.7 0.0 0.042 13.9 0.0 1.9 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain NanE PF04131.14 gi|126465890|ref|YP_001040999.1| - 0.076 12.2 0.1 0.34 10.1 0.0 1.9 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase MazG PF03819.17 gi|126465891|ref|YP_001041000.1| - 1.4e-11 44.4 4.6 2.2e-11 43.8 2.2 1.9 1 1 1 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|126465891|ref|YP_001041000.1| - 4.3e-06 26.9 0.1 6.4e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|126465891|ref|YP_001041000.1| - 0.0001 22.6 0.3 0.00012 22.5 0.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Sec61_beta PF03911.16 gi|126465892|ref|YP_001041001.1| - 2.8e-13 49.7 0.9 3.2e-13 49.5 0.9 1.1 1 0 0 1 1 1 1 Sec61beta family Acetyltransf_1 PF00583.25 gi|126465893|ref|YP_001041002.1| - 1.3e-20 73.8 0.2 1.6e-19 70.2 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|126465893|ref|YP_001041002.1| - 4e-17 62.3 0.1 8.7e-15 54.8 0.0 2.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|126465893|ref|YP_001041002.1| - 4e-15 56.0 1.4 1.2e-14 54.5 0.4 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126465893|ref|YP_001041002.1| - 1.6e-06 28.0 0.0 3.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|126465893|ref|YP_001041002.1| - 1.2e-05 25.3 0.0 0.00038 20.5 0.0 2.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|126465893|ref|YP_001041002.1| - 6.7e-05 23.0 0.0 0.00016 21.8 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|126465893|ref|YP_001041002.1| - 0.0049 17.0 0.4 2.7 8.1 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|126465893|ref|YP_001041002.1| - 0.027 14.6 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|126465893|ref|YP_001041002.1| - 0.066 12.7 0.4 0.089 12.3 0.4 1.4 1 0 0 1 1 1 0 Putative acetyl-transferase TPP_enzyme_C PF02775.21 gi|126465894|ref|YP_001041003.1| - 9.6e-27 93.7 1.3 1.3e-26 93.2 1.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|126465894|ref|YP_001041003.1| - 0.0038 16.5 3.1 0.0055 15.9 1.8 1.7 1 1 1 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|126465895|ref|YP_001041004.1| - 8e-67 225.4 0.2 1.1e-66 224.9 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|126465895|ref|YP_001041004.1| - 2.4e-25 88.8 0.0 9.5e-25 86.9 0.0 1.9 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|126465895|ref|YP_001041004.1| - 0.0011 18.8 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain SurA_N_2 PF13623.6 gi|126465895|ref|YP_001041004.1| - 0.16 11.8 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 SurA N-terminal domain Fer4 PF00037.27 gi|126465896|ref|YP_001041005.1| - 2.4e-14 52.5 16.6 1.5e-09 37.2 6.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126465896|ref|YP_001041005.1| - 1.5e-11 44.3 10.1 2e-11 43.9 10.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465896|ref|YP_001041005.1| - 7.8e-11 41.6 16.2 5.1e-06 26.3 5.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126465896|ref|YP_001041005.1| - 1.2e-09 38.6 12.2 1.8e-09 38.1 12.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465896|ref|YP_001041005.1| - 1.4e-08 35.5 9.1 4.3e-05 24.3 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|126465896|ref|YP_001041005.1| - 4.7e-08 33.0 22.5 2.7e-05 24.2 12.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126465896|ref|YP_001041005.1| - 3.2e-07 30.4 9.7 4.6e-07 29.9 9.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126465896|ref|YP_001041005.1| - 1.6e-06 27.9 14.1 0.00035 20.5 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126465896|ref|YP_001041005.1| - 2.4e-06 28.0 4.6 0.016 15.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126465896|ref|YP_001041005.1| - 6.4e-06 26.3 14.2 0.0018 18.6 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|126465896|ref|YP_001041005.1| - 0.00036 20.9 13.1 0.029 14.8 2.6 2.1 1 1 2 3 3 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126465896|ref|YP_001041005.1| - 0.0082 17.0 7.1 0.14 13.0 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126465896|ref|YP_001041005.1| - 0.021 15.8 19.2 0.11 13.5 7.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|126465896|ref|YP_001041005.1| - 0.45 11.1 12.2 0.96 10.0 2.4 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|126465896|ref|YP_001041005.1| - 0.51 11.1 14.9 0.17 12.7 3.9 3.4 2 2 0 2 2 2 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|126465896|ref|YP_001041005.1| - 1.1 9.4 7.0 0.2 11.8 1.3 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|126465896|ref|YP_001041005.1| - 5.6 7.2 11.4 31 4.8 11.5 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|126465897|ref|YP_001041006.1| - 2.1e-33 115.9 1.8 2.5e-33 115.6 1.8 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase OMPdecase PF00215.24 gi|126465897|ref|YP_001041006.1| - 0.075 12.6 0.1 0.12 12.0 0.1 1.2 1 0 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PCNA_N PF00705.18 gi|126465899|ref|YP_001041008.1| - 2.8e-10 40.0 0.0 4.3e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|126465899|ref|YP_001041008.1| - 0.00017 21.7 0.0 0.028 14.6 0.0 2.7 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain DUF960 PF06124.11 gi|126465899|ref|YP_001041008.1| - 0.01 16.5 0.1 0.035 14.7 0.0 1.9 2 0 0 2 2 2 1 Staphylococcal protein of unknown function (DUF960) Hus1 PF04005.12 gi|126465899|ref|YP_001041008.1| - 0.073 12.2 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Hus1-like protein HxlR PF01638.17 gi|126465899|ref|YP_001041008.1| - 0.11 12.4 0.0 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 HxlR-like helix-turn-helix PRK PF00485.18 gi|126465900|ref|YP_001041009.1| - 0.018 14.8 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_pol_Rpo13 PF12136.8 gi|126465901|ref|YP_001041010.1| - 3.8e-19 68.3 9.9 6.1e-19 67.7 9.9 1.3 1 0 0 1 1 1 1 RNA polymerase Rpo13 subunit HTH domain DUF87 PF01935.17 gi|126465902|ref|YP_001041011.1| - 1.8e-18 67.5 0.8 1e-17 65.0 0.8 2.2 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|126465902|ref|YP_001041011.1| - 1.5e-08 33.9 0.0 3e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|126465902|ref|YP_001041011.1| - 0.00042 19.3 0.0 0.0018 17.3 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|126465902|ref|YP_001041011.1| - 0.00057 20.2 0.0 0.0091 16.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF853 PF05872.12 gi|126465902|ref|YP_001041011.1| - 0.00058 18.6 0.0 0.0032 16.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) DUF2075 PF09848.9 gi|126465902|ref|YP_001041011.1| - 0.00058 19.2 0.0 0.00095 18.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|126465902|ref|YP_001041011.1| - 0.00075 19.9 0.0 0.0016 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|126465902|ref|YP_001041011.1| - 0.00079 18.8 0.0 0.0089 15.4 0.0 2.1 2 0 0 2 2 2 1 KaiC DUF815 PF05673.13 gi|126465902|ref|YP_001041011.1| - 0.0025 17.0 0.0 0.0045 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|126465902|ref|YP_001041011.1| - 0.0035 17.1 0.0 0.0065 16.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.18 gi|126465902|ref|YP_001041011.1| - 0.0043 16.4 0.0 0.0083 15.5 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|126465902|ref|YP_001041011.1| - 0.0071 16.7 0.0 0.023 15.1 0.0 1.9 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|126465902|ref|YP_001041011.1| - 0.0097 16.3 0.1 0.041 14.3 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|126465902|ref|YP_001041011.1| - 0.011 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|126465902|ref|YP_001041011.1| - 0.012 16.2 0.0 0.024 15.1 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|126465902|ref|YP_001041011.1| - 0.012 16.1 0.0 0.026 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|126465902|ref|YP_001041011.1| - 0.016 14.3 0.0 0.032 13.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|126465902|ref|YP_001041011.1| - 0.022 14.5 0.0 0.079 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|126465902|ref|YP_001041011.1| - 0.025 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|126465902|ref|YP_001041011.1| - 0.027 14.5 0.0 0.069 13.2 0.0 1.7 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|126465902|ref|YP_001041011.1| - 0.058 13.7 0.0 0.18 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|126465902|ref|YP_001041011.1| - 0.06 13.4 0.1 0.33 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|126465902|ref|YP_001041011.1| - 0.072 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain TraG-D_C PF12696.7 gi|126465902|ref|YP_001041011.1| - 0.092 12.7 0.2 0.46 10.5 0.2 2.1 1 1 0 1 1 1 0 TraM recognition site of TraD and TraG AAA_28 PF13521.6 gi|126465902|ref|YP_001041011.1| - 0.36 11.1 0.5 0.8 9.9 0.5 1.5 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|126465903|ref|YP_001041012.1| - 1.3e-24 86.9 0.1 4.5e-24 85.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126465903|ref|YP_001041012.1| - 5.5e-22 78.2 0.9 2.9e-20 72.7 0.3 3.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126465903|ref|YP_001041012.1| - 4.2e-10 39.9 0.5 3.3e-09 37.0 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|126465903|ref|YP_001041012.1| - 3.6e-08 33.4 0.0 9.1e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated AAA_19 PF13245.6 gi|126465903|ref|YP_001041012.1| - 0.00034 21.0 0.0 0.00086 19.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain UvrD-helicase PF00580.21 gi|126465903|ref|YP_001041012.1| - 0.002 17.7 0.8 0.029 13.9 0.0 2.6 2 1 1 3 3 3 1 UvrD/REP helicase N-terminal domain HypA PF01155.19 gi|126465903|ref|YP_001041012.1| - 0.024 14.6 0.2 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|126465903|ref|YP_001041012.1| - 0.08 13.0 1.6 3 8.0 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC5 PF06221.13 gi|126465903|ref|YP_001041012.1| - 0.15 12.1 0.2 0.3 11.1 0.2 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.6 gi|126465903|ref|YP_001041012.1| - 0.17 11.6 0.8 0.59 9.9 0.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF4776 PF16003.5 gi|126465903|ref|YP_001041012.1| - 0.22 10.5 0.1 0.31 10.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) PAPS_reduct PF01507.19 gi|126465904|ref|YP_001041013.1| - 3.2e-38 131.5 0.0 6.3e-38 130.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_21 PF14697.6 gi|126465904|ref|YP_001041013.1| - 1.1e-05 25.4 8.2 2.8e-05 24.1 8.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126465904|ref|YP_001041013.1| - 1.1e-05 25.7 0.9 0.16 12.4 0.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465904|ref|YP_001041013.1| - 7.1e-05 23.7 8.9 0.077 13.9 0.9 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|126465904|ref|YP_001041013.1| - 0.00016 21.7 7.9 0.0015 18.7 8.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126465904|ref|YP_001041013.1| - 0.00039 20.9 8.4 0.0054 17.3 7.0 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|126465904|ref|YP_001041013.1| - 0.00047 20.6 3.4 0.39 11.3 0.2 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|126465904|ref|YP_001041013.1| - 0.027 14.6 12.6 0.31 11.2 2.7 2.5 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465904|ref|YP_001041013.1| - 0.26 11.4 13.5 0.038 14.1 3.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|126465904|ref|YP_001041013.1| - 0.32 10.9 16.5 0.11 12.3 5.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|126465904|ref|YP_001041013.1| - 0.48 11.3 4.9 8.1 7.4 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126465904|ref|YP_001041013.1| - 1.7 9.4 13.1 1.8 9.3 0.9 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|126465904|ref|YP_001041013.1| - 3 8.1 9.5 13 6.1 2.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126465904|ref|YP_001041013.1| - 4.8 8.3 20.9 0.77 10.8 3.3 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Tetrabrachion PF11401.8 gi|126465905|ref|YP_001041014.1| - 1.9e-33 114.2 9.8 1.9e-33 114.2 9.8 4.0 5 0 0 5 5 5 1 Tetrabrachion Apolipoprotein PF01442.18 gi|126465905|ref|YP_001041014.1| - 5.6e-06 26.4 0.0 0.035 14.0 0.0 3.0 1 1 2 3 3 3 2 Apolipoprotein A1/A4/E domain V-SNARE PF05008.15 gi|126465905|ref|YP_001041014.1| - 0.14 12.6 2.5 1.8 9.0 0.0 3.2 3 0 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Phage_Mu_Gam PF07352.12 gi|126465905|ref|YP_001041014.1| - 0.2 11.6 0.3 11 5.9 0.0 3.0 3 0 0 3 3 3 0 Bacteriophage Mu Gam like protein Phasin PF05597.11 gi|126465905|ref|YP_001041014.1| - 0.41 10.6 2.0 41 4.2 0.0 3.2 2 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Baculo_PEP_C PF04513.12 gi|126465905|ref|YP_001041014.1| - 1 9.4 89.4 0.16 12.0 21.9 5.9 1 1 4 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4455 PF14643.6 gi|126465905|ref|YP_001041014.1| - 1.1 7.8 4.8 2.9 6.5 0.0 2.5 2 1 0 3 3 3 0 Domain of unknown function (DUF4455) KxDL PF10241.9 gi|126465905|ref|YP_001041014.1| - 3.4 8.0 10.2 1.6 9.1 0.1 3.8 4 0 0 4 4 4 0 Uncharacterized conserved protein Trep_Strep PF09605.10 gi|126465908|ref|YP_001041017.1| - 0.034 14.1 5.1 0.05 13.6 5.1 1.2 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF3810 PF12725.7 gi|126465908|ref|YP_001041017.1| - 0.081 12.3 0.8 0.094 12.0 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) COX2-transmemb PF09125.10 gi|126465908|ref|YP_001041017.1| - 6.9 6.6 9.1 0.39 10.6 3.9 1.6 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane FGFR3_TM PF18123.1 gi|126465909|ref|YP_001041018.1| - 1.7 8.2 8.6 9.1 5.9 3.0 3.1 2 0 0 2 2 2 0 Fibroblast growth factor receptor 3 transmembrane domain DUF853 PF05872.12 gi|126465910|ref|YP_001041019.1| - 4e-12 45.5 0.0 1.1e-05 24.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|126465910|ref|YP_001041019.1| - 5.4e-09 36.5 4.7 1.3e-08 35.3 0.1 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|126465910|ref|YP_001041019.1| - 8e-09 34.9 0.1 1.1e-05 24.6 0.0 2.8 3 0 0 3 3 3 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|126465910|ref|YP_001041019.1| - 5.5e-07 28.8 0.0 0.00041 19.4 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|126465910|ref|YP_001041019.1| - 2.6e-05 23.7 0.0 5.3e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|126465910|ref|YP_001041019.1| - 0.0003 21.1 0.2 0.38 11.0 0.0 2.8 3 0 0 3 3 2 2 AAA domain TraG-D_C PF12696.7 gi|126465910|ref|YP_001041019.1| - 0.00039 20.4 0.0 0.0011 18.9 0.0 1.8 1 1 0 1 1 1 1 TraM recognition site of TraD and TraG ABC_tran PF00005.27 gi|126465910|ref|YP_001041019.1| - 0.00074 20.1 0.0 0.07 13.6 0.0 2.6 2 0 0 2 2 2 1 ABC transporter ATPase_2 PF01637.18 gi|126465910|ref|YP_001041019.1| - 0.0014 18.6 0.2 0.024 14.5 0.0 2.6 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|126465910|ref|YP_001041019.1| - 0.0093 15.1 0.1 0.018 14.1 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.15 gi|126465910|ref|YP_001041019.1| - 0.021 14.8 0.0 0.19 11.7 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|126465910|ref|YP_001041019.1| - 0.048 13.4 0.0 2.9 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|126465910|ref|YP_001041019.1| - 0.057 13.2 0.0 0.35 10.6 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|126465910|ref|YP_001041019.1| - 0.07 12.6 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|126465910|ref|YP_001041019.1| - 0.076 13.0 0.0 1.3 9.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|126465910|ref|YP_001041019.1| - 0.078 13.3 0.0 1.1 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|126465910|ref|YP_001041019.1| - 0.095 12.5 0.1 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|126465910|ref|YP_001041019.1| - 0.096 12.6 1.0 0.3 11.0 0.1 2.2 3 0 0 3 3 3 0 NACHT domain AAA PF00004.29 gi|126465910|ref|YP_001041019.1| - 0.13 12.7 0.3 6 7.3 0.2 2.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|126465910|ref|YP_001041019.1| - 0.13 12.8 0.3 0.13 12.8 0.3 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|126465910|ref|YP_001041019.1| - 0.16 11.7 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Methyltrn_RNA_3 PF02598.17 gi|126465912|ref|YP_001041021.1| - 5.6e-47 160.6 0.0 6.5e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.22 gi|126465913|ref|YP_001041022.1| - 2.6e-72 243.9 0.4 6.5e-70 235.9 0.4 2.9 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|126465914|ref|YP_001041023.1| - 1.6e-40 138.9 0.0 1.8e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Autoind_bind PF03472.15 gi|126465914|ref|YP_001041023.1| - 0.11 11.9 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Autoinducer binding domain Ribosomal_L23 PF00276.20 gi|126465915|ref|YP_001041024.1| - 6.8e-19 68.0 1.6 6.7e-18 64.8 1.6 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L2_C PF03947.18 gi|126465916|ref|YP_001041025.1| - 1.1e-45 154.9 4.0 1.5e-45 154.4 4.0 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|126465916|ref|YP_001041025.1| - 2.3e-15 56.3 0.0 7.5e-15 54.7 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain SAMP PF05924.11 gi|126465917|ref|YP_001041026.1| - 0.56 9.6 0.1 0.56 9.6 0.1 1.8 2 0 0 2 2 2 0 SAMP Motif AAA_5 PF07728.14 gi|126465918|ref|YP_001041027.1| - 2.5e-17 63.2 0.0 4.4e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|126465918|ref|YP_001041027.1| - 0.00062 19.6 0.0 0.0036 17.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|126465918|ref|YP_001041027.1| - 0.0012 19.3 0.1 0.0063 16.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|126465918|ref|YP_001041027.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|126465918|ref|YP_001041027.1| - 0.024 14.3 0.0 7.2 6.3 0.0 2.6 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|126465918|ref|YP_001041027.1| - 0.025 14.1 0.0 0.19 11.2 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|126465918|ref|YP_001041027.1| - 0.025 15.1 0.0 0.058 14.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126465918|ref|YP_001041027.1| - 0.068 13.5 0.1 0.72 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|126465918|ref|YP_001041027.1| - 0.072 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|126465918|ref|YP_001041027.1| - 0.18 11.2 0.0 2 7.8 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|126465918|ref|YP_001041027.1| - 0.22 11.3 0.0 0.75 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain VWA_CoxE PF05762.14 gi|126465919|ref|YP_001041028.1| - 0.00014 21.4 0.0 0.00028 20.3 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|126465919|ref|YP_001041028.1| - 0.0059 17.2 0.0 0.028 15.1 0.0 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain Ribosomal_S19 PF00203.21 gi|126465920|ref|YP_001041029.1| - 1.7e-35 120.8 0.6 2.3e-35 120.3 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|126465920|ref|YP_001041029.1| - 0.055 14.0 0.3 0.094 13.2 0.3 1.3 1 0 0 1 1 1 0 bZIP Maf transcription factor Ribosomal_L22 PF00237.19 gi|126465921|ref|YP_001041030.1| - 1.1e-30 105.9 0.2 1.3e-30 105.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|126465922|ref|YP_001041031.1| - 1.5e-21 76.7 3.3 2.6e-21 75.9 3.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|126465922|ref|YP_001041031.1| - 3.4e-10 39.6 0.0 7.4e-10 38.5 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|126465922|ref|YP_001041031.1| - 0.012 15.4 3.3 0.017 14.9 1.8 2.2 2 1 0 2 2 2 0 KH domain KH_4 PF13083.6 gi|126465922|ref|YP_001041031.1| - 0.09 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 KH domain Ribosomal_L29 PF00831.23 gi|126465923|ref|YP_001041032.1| - 1.2e-19 70.0 9.2 1.5e-19 69.7 9.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein IFT57 PF10498.9 gi|126465923|ref|YP_001041032.1| - 0.099 11.6 1.1 0.11 11.5 1.1 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 UPF0086 PF01868.16 gi|126465924|ref|YP_001041033.1| - 1.9e-20 72.5 0.1 2.1e-20 72.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Tox-MPTase2 PF15638.6 gi|126465924|ref|YP_001041033.1| - 0.17 11.6 0.0 0.2 11.4 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase toxin 2 Ribosomal_S17 PF00366.20 gi|126465925|ref|YP_001041034.1| - 2e-27 95.1 3.0 2.5e-27 94.8 3.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|126465925|ref|YP_001041034.1| - 0.00028 21.2 0.7 0.0004 20.7 0.1 1.6 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|126465925|ref|YP_001041034.1| - 0.13 12.0 1.2 0.25 11.1 1.2 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain Ribosomal_L14 PF00238.19 gi|126465926|ref|YP_001041035.1| - 8e-36 122.8 0.1 9.1e-36 122.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|126465927|ref|YP_001041036.1| - 2e-36 124.3 0.9 2.7e-36 123.9 0.9 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|126465927|ref|YP_001041036.1| - 6.4e-07 29.1 1.8 1.4e-06 28.1 1.8 1.6 1 0 0 1 1 1 1 KOW motif SH3_2 PF07653.17 gi|126465927|ref|YP_001041036.1| - 0.047 13.4 0.5 0.42 10.3 0.5 2.1 1 1 0 1 1 1 0 Variant SH3 domain MS_channel PF00924.18 gi|126465927|ref|YP_001041036.1| - 0.21 11.1 0.1 0.37 10.3 0.1 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel Ribosomal_S4e PF00900.20 gi|126465928|ref|YP_001041037.1| - 2.8e-25 88.0 0.4 4.8e-25 87.3 0.4 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|126465928|ref|YP_001041037.1| - 1e-18 67.1 5.2 2.2e-18 66.0 5.2 1.6 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|126465928|ref|YP_001041037.1| - 1.6e-15 56.6 0.2 1.1e-14 53.8 0.1 2.3 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|126465928|ref|YP_001041037.1| - 8.8e-05 22.1 0.0 0.00021 20.8 0.0 1.7 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|126465928|ref|YP_001041037.1| - 0.0019 18.1 2.6 0.0053 16.7 2.6 1.9 1 0 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.21 gi|126465929|ref|YP_001041038.1| - 7.4e-27 93.4 0.0 1.7e-26 92.2 0.0 1.6 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|126465929|ref|YP_001041038.1| - 9e-21 74.0 0.1 1.7e-20 73.1 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 UPF0147 PF03685.13 gi|126465929|ref|YP_001041038.1| - 0.0048 16.9 0.2 0.013 15.6 0.1 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0147) Ribosomal_S14 PF00253.21 gi|126465930|ref|YP_001041039.1| - 3.6e-12 45.8 3.3 4e-12 45.7 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|126465930|ref|YP_001041039.1| - 0.0037 17.1 4.7 0.0055 16.5 4.7 1.2 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|126465930|ref|YP_001041039.1| - 0.0076 16.3 0.1 0.0092 16.0 0.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_S8 PF00410.19 gi|126465931|ref|YP_001041040.1| - 2.1e-26 92.3 0.0 3.3e-26 91.7 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein S8 SPATA6 PF14909.6 gi|126465931|ref|YP_001041040.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Spermatogenesis-assoc protein 6 Ribosomal_L6 PF00347.23 gi|126465932|ref|YP_001041041.1| - 1.1e-24 86.8 11.3 4.6e-16 59.2 2.3 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.18 gi|126465933|ref|YP_001041042.1| - 2.6e-34 117.9 0.3 3.6e-34 117.4 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|126465934|ref|YP_001041043.1| - 2.7e-57 192.9 12.1 3e-57 192.7 12.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HSR PF03172.13 gi|126465934|ref|YP_001041043.1| - 0.056 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 HSR domain Ish1 PF10281.9 gi|126465934|ref|YP_001041043.1| - 0.09 13.1 0.2 22 5.4 0.0 3.2 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein Ribosomal_L5e PF17144.4 gi|126465935|ref|YP_001041044.1| - 6.2e-30 104.3 1.4 8.5e-23 81.1 0.4 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|126465935|ref|YP_001041044.1| - 4.6e-09 37.1 0.3 1.1e-08 35.9 0.0 1.7 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|126465935|ref|YP_001041044.1| - 9.1e-06 26.0 0.0 1.2e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|126465936|ref|YP_001041045.1| - 1.4e-24 85.3 0.4 2.8e-24 84.4 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|126465936|ref|YP_001041045.1| - 4.1e-22 77.9 4.8 1.1e-21 76.6 0.9 2.7 3 0 0 3 3 3 1 Ribosomal protein S5, N-terminal domain FaeA PF04703.12 gi|126465936|ref|YP_001041045.1| - 0.16 12.4 0.1 0.29 11.5 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein Ribosomal_L30 PF00327.20 gi|126465937|ref|YP_001041046.1| - 5.9e-14 51.7 0.0 1.1e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|126465938|ref|YP_001041047.1| - 4.8e-19 69.3 0.1 6.5e-19 68.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|126465939|ref|YP_001041048.1| - 9e-62 209.1 19.8 9e-62 209.1 19.8 1.4 2 0 0 2 2 2 1 SecY translocase Plug_translocon PF10559.9 gi|126465939|ref|YP_001041048.1| - 6.7e-10 38.6 1.0 2.6e-09 36.8 1.0 2.1 1 0 0 1 1 1 1 Plug domain of Sec61p DUF5572 PF17733.1 gi|126465939|ref|YP_001041048.1| - 0.15 12.0 0.1 0.42 10.5 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5572) Ribosomal_L34e PF01199.18 gi|126465941|ref|YP_001041050.1| - 8.7e-27 93.3 1.1 9.5e-27 93.2 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.13 gi|126465941|ref|YP_001041050.1| - 0.0014 18.5 0.3 0.017 15.0 0.3 2.2 1 1 0 1 1 1 1 ClpX C4-type zinc finger DUF4428 PF14471.6 gi|126465941|ref|YP_001041050.1| - 0.0027 17.6 0.1 0.93 9.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) zf-P11 PF03854.14 gi|126465941|ref|YP_001041050.1| - 0.0072 16.0 1.3 0.86 9.3 0.1 2.2 2 0 0 2 2 2 2 P-11 zinc finger DZR PF12773.7 gi|126465941|ref|YP_001041050.1| - 0.027 14.5 0.1 0.042 13.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|126465941|ref|YP_001041050.1| - 0.048 13.6 2.6 2.6 8.0 0.2 2.3 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Gin PF10764.9 gi|126465941|ref|YP_001041050.1| - 0.063 13.2 0.1 2 8.4 0.0 2.2 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin zf-HIT PF04438.16 gi|126465941|ref|YP_001041050.1| - 0.09 12.7 3.0 2.6 8.0 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger zf_UBZ PF18439.1 gi|126465941|ref|YP_001041050.1| - 0.35 10.5 0.5 6.6 6.4 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Cytidylate_kin2 PF13189.6 gi|126465942|ref|YP_001041051.1| - 1.9e-18 67.2 1.3 4.3e-16 59.6 1.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|126465942|ref|YP_001041051.1| - 4e-14 53.2 0.0 7.8e-14 52.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126465942|ref|YP_001041051.1| - 2.9e-13 50.5 0.0 4.1e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|126465942|ref|YP_001041051.1| - 3.9e-11 43.1 1.6 0.00012 21.8 0.3 2.1 1 1 0 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|126465942|ref|YP_001041051.1| - 2.5e-05 24.4 0.2 8.4e-05 22.7 0.2 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.6 gi|126465942|ref|YP_001041051.1| - 0.00068 19.9 0.0 0.0013 19.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|126465942|ref|YP_001041051.1| - 0.0013 19.2 0.0 0.0023 18.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|126465942|ref|YP_001041051.1| - 0.0022 17.7 0.0 1 9.0 0.0 2.3 2 0 0 2 2 2 2 Thymidylate kinase AAA_22 PF13401.6 gi|126465942|ref|YP_001041051.1| - 0.0051 17.1 0.0 0.0082 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|126465942|ref|YP_001041051.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 NTPase KTI12 PF08433.10 gi|126465942|ref|YP_001041051.1| - 0.0072 15.8 0.0 0.015 14.7 0.0 1.6 2 0 0 2 2 2 1 Chromatin associated protein KTI12 PRK PF00485.18 gi|126465942|ref|YP_001041051.1| - 0.012 15.4 0.6 1.4 8.6 0.0 2.2 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|126465942|ref|YP_001041051.1| - 0.016 15.4 0.0 0.072 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|126465942|ref|YP_001041051.1| - 0.027 14.1 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RuvB_N PF05496.12 gi|126465942|ref|YP_001041051.1| - 0.067 12.9 0.2 0.5 10.1 0.0 2.2 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|126465942|ref|YP_001041051.1| - 0.087 12.8 0.0 0.28 11.2 0.0 1.8 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|126465942|ref|YP_001041051.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_16 PF13191.6 gi|126465942|ref|YP_001041051.1| - 0.18 12.2 0.0 0.23 11.8 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain KOW PF00467.29 gi|126465943|ref|YP_001041052.1| - 0.0002 21.2 0.2 0.00045 20.1 0.2 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|126465943|ref|YP_001041052.1| - 0.061 13.8 0.0 0.087 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L14 DKCLD PF08068.12 gi|126465944|ref|YP_001041053.1| - 5.6e-18 64.8 0.1 7.4e-18 64.4 0.1 1.2 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB_N PF01509.18 gi|126465944|ref|YP_001041053.1| - 0.23 11.8 0.0 0.39 11.1 0.0 1.3 1 0 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|126465945|ref|YP_001041054.1| - 1.8e-23 82.4 0.2 3.7e-23 81.5 0.2 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|126465945|ref|YP_001041054.1| - 1.1e-16 60.6 1.6 1.7e-16 59.9 1.6 1.3 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.18 gi|126465945|ref|YP_001041054.1| - 2e-13 51.0 0.1 3.7e-05 24.1 0.0 3.3 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) UPF0113 PF03657.13 gi|126465945|ref|YP_001041054.1| - 0.077 13.3 0.2 0.23 11.8 0.1 1.9 2 0 0 2 2 2 0 UPF0113 PUA domain MTS PF05175.14 gi|126465946|ref|YP_001041055.1| - 1.1e-35 122.7 0.0 1.2e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|126465946|ref|YP_001041055.1| - 1.9e-14 53.7 0.0 3e-14 53.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|126465946|ref|YP_001041055.1| - 4.2e-13 49.3 0.0 4.2e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|126465946|ref|YP_001041055.1| - 2e-10 41.2 0.0 2.9e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|126465946|ref|YP_001041055.1| - 5.2e-09 36.1 0.1 6.3e-09 35.9 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|126465946|ref|YP_001041055.1| - 1.8e-08 34.4 0.0 2.2e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126465946|ref|YP_001041055.1| - 1.4e-07 32.0 0.0 2.1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|126465946|ref|YP_001041055.1| - 9.2e-07 28.8 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|126465946|ref|YP_001041055.1| - 2.3e-06 27.6 0.0 3.3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|126465946|ref|YP_001041055.1| - 3.8e-06 26.6 0.0 5.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|126465946|ref|YP_001041055.1| - 9.9e-06 26.2 0.0 1.4e-05 25.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126465946|ref|YP_001041055.1| - 3.2e-05 23.7 0.0 4.1e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TRM PF02005.16 gi|126465946|ref|YP_001041055.1| - 0.0011 18.2 0.0 0.0013 18.0 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_2 PF00891.18 gi|126465946|ref|YP_001041055.1| - 0.0016 17.8 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain UPF0020 PF01170.18 gi|126465946|ref|YP_001041055.1| - 0.005 16.5 0.0 0.0067 16.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 GidB PF02527.15 gi|126465946|ref|YP_001041055.1| - 0.006 15.9 0.1 0.0081 15.5 0.1 1.3 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G N6_Mtase PF02384.16 gi|126465946|ref|YP_001041055.1| - 0.0064 15.8 0.0 0.014 14.7 0.0 1.5 1 1 1 2 2 2 1 N-6 DNA Methylase Methyltransf_4 PF02390.17 gi|126465946|ref|YP_001041055.1| - 0.012 15.1 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Ubie_methyltran PF01209.18 gi|126465946|ref|YP_001041055.1| - 0.014 14.8 0.0 0.028 13.7 0.0 1.5 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Clr2 PF10383.9 gi|126465946|ref|YP_001041055.1| - 0.042 14.6 0.0 0.055 14.3 0.0 1.1 1 0 0 1 1 1 0 Transcription-silencing protein Clr2 Methyltransf_32 PF13679.6 gi|126465946|ref|YP_001041055.1| - 0.066 13.2 0.0 0.088 12.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|126465946|ref|YP_001041055.1| - 0.076 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PAP2 PF01569.21 gi|126465947|ref|YP_001041056.1| - 8.8e-16 57.9 5.7 8.8e-16 57.9 5.7 2.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|126465947|ref|YP_001041056.1| - 1.2e-07 31.6 6.9 1.2e-07 31.6 6.9 2.3 2 1 1 3 3 3 1 PAP2 superfamily DUF212 PF02681.14 gi|126465947|ref|YP_001041056.1| - 0.00094 19.3 1.1 0.24 11.5 0.0 2.5 1 1 1 2 2 2 2 Divergent PAP2 family PAP2_C PF14360.6 gi|126465947|ref|YP_001041056.1| - 0.001 19.6 2.8 0.001 19.6 2.8 3.2 3 1 0 3 3 3 1 PAP2 superfamily C-terminal RuBisCO_large PF00016.20 gi|126465948|ref|YP_001041057.1| - 1.8e-100 336.0 0.0 2.2e-100 335.7 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|126465948|ref|YP_001041057.1| - 9.9e-47 158.0 0.0 1.9e-46 157.1 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.12 gi|126465948|ref|YP_001041057.1| - 0.042 13.5 0.1 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF697) LigA PF07746.11 gi|126465948|ref|YP_001041057.1| - 0.08 13.1 0.0 0.28 11.3 0.0 1.8 2 0 0 2 2 2 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Archease PF01951.16 gi|126465949|ref|YP_001041058.1| - 3.3e-43 147.2 0.3 3.7e-43 147.1 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Peptidase_M54 PF07998.11 gi|126465950|ref|YP_001041059.1| - 1.9e-31 109.5 0.1 2.2e-31 109.4 0.1 1.0 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|126465950|ref|YP_001041059.1| - 0.00013 21.8 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 Matrixin Peptidase_M43 PF05572.13 gi|126465950|ref|YP_001041059.1| - 0.024 14.5 0.1 0.041 13.8 0.1 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Metallopep PF12044.8 gi|126465950|ref|YP_001041059.1| - 0.037 12.6 0.0 0.053 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative peptidase family Reprolysin PF01421.19 gi|126465950|ref|YP_001041059.1| - 0.057 13.3 0.1 0.087 12.7 0.1 1.2 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Peptidase_M66 PF10462.9 gi|126465950|ref|YP_001041059.1| - 0.091 11.7 0.0 0.17 10.8 0.0 1.4 2 0 0 2 2 2 0 Peptidase M66 Reprolysin_4 PF13583.6 gi|126465950|ref|YP_001041059.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|126465950|ref|YP_001041059.1| - 0.2 10.8 0.1 0.27 10.4 0.1 1.2 1 0 0 1 1 1 0 Met-zincin Reprolysin_3 PF13582.6 gi|126465950|ref|YP_001041059.1| - 0.22 12.1 0.6 0.33 11.5 0.2 1.7 2 1 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like NTP_transferase PF00483.23 gi|126465951|ref|YP_001041060.1| - 1.1e-36 126.7 0.0 1.3e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|126465951|ref|YP_001041060.1| - 2.1e-12 47.7 0.0 2.9e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|126465951|ref|YP_001041060.1| - 0.00047 20.0 0.0 0.00056 19.7 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Pyr_redox_2 PF07992.14 gi|126465952|ref|YP_001041061.1| - 2.3e-33 115.7 0.0 2.8e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126465952|ref|YP_001041061.1| - 8.5e-10 38.4 1.6 1.8e-06 27.4 0.0 2.8 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|126465952|ref|YP_001041061.1| - 1e-07 32.1 1.5 2.7e-06 27.5 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|126465952|ref|YP_001041061.1| - 1.8e-07 31.6 1.5 0.017 15.6 0.3 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|126465952|ref|YP_001041061.1| - 1.5e-06 27.9 1.8 0.0021 17.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|126465952|ref|YP_001041061.1| - 3.5e-06 26.4 0.4 0.11 11.5 0.1 2.9 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|126465952|ref|YP_001041061.1| - 1.4e-05 24.4 1.3 0.16 11.0 0.1 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|126465952|ref|YP_001041061.1| - 1.4e-05 24.5 0.5 0.091 12.0 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|126465952|ref|YP_001041061.1| - 3.1e-05 23.4 0.1 0.021 14.1 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|126465952|ref|YP_001041061.1| - 0.00018 21.2 0.8 0.18 11.4 0.1 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|126465952|ref|YP_001041061.1| - 0.0005 18.9 1.2 0.016 14.0 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Shikimate_DH PF01488.20 gi|126465952|ref|YP_001041061.1| - 0.00069 19.7 0.2 0.023 14.7 0.1 2.8 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|126465952|ref|YP_001041061.1| - 0.0064 15.9 0.2 1.2 8.5 0.0 2.9 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|126465952|ref|YP_001041061.1| - 0.022 14.0 0.4 0.29 10.3 0.1 2.2 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|126465952|ref|YP_001041061.1| - 0.084 12.8 2.5 0.86 9.5 0.0 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|126465952|ref|YP_001041061.1| - 0.086 12.0 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|126465952|ref|YP_001041061.1| - 0.31 11.0 0.7 5.9 6.9 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4_11 PF13247.6 gi|126465953|ref|YP_001041062.1| - 2.3e-20 72.6 9.3 2.3e-20 72.6 9.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|126465953|ref|YP_001041062.1| - 1.5e-14 54.3 23.4 1.9e-06 28.4 11.5 4.0 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126465953|ref|YP_001041062.1| - 7e-12 45.3 56.9 5.1e-07 29.8 9.4 3.4 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126465953|ref|YP_001041062.1| - 4.2e-11 42.2 41.9 1e-05 25.1 3.5 5.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465953|ref|YP_001041062.1| - 3.2e-10 40.0 29.9 3.1e-06 27.2 10.5 3.6 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126465953|ref|YP_001041062.1| - 4e-10 39.3 40.5 0.00013 21.9 2.4 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|126465953|ref|YP_001041062.1| - 8e-09 35.1 33.5 0.00022 21.1 1.3 4.3 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|126465953|ref|YP_001041062.1| - 8.2e-08 32.7 38.3 0.0044 17.9 3.6 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|126465953|ref|YP_001041062.1| - 2e-06 28.6 27.3 0.021 15.8 1.4 4.5 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|126465953|ref|YP_001041062.1| - 2.5e-05 24.7 25.1 0.23 12.0 0.2 4.4 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|126465953|ref|YP_001041062.1| - 3.9e-05 23.8 35.9 0.0013 19.0 2.1 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126465953|ref|YP_001041062.1| - 0.00056 20.0 28.6 0.01 16.0 10.2 3.6 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126465953|ref|YP_001041062.1| - 0.0007 20.0 29.3 0.066 13.7 9.5 4.1 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|126465953|ref|YP_001041062.1| - 0.088 13.6 19.3 0.26 12.0 0.5 3.9 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|126465953|ref|YP_001041062.1| - 1.8 8.8 20.9 0.088 13.0 7.2 3.1 2 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126465953|ref|YP_001041062.1| - 2.9 8.8 19.7 2.2 9.2 0.3 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain Proton_antipo_M PF00361.20 gi|126465954|ref|YP_001041063.1| - 8.9e-38 130.1 30.1 8.9e-38 130.1 30.1 2.2 3 0 0 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|126465954|ref|YP_001041063.1| - 0.031 14.4 0.1 0.031 14.4 0.1 4.6 6 1 0 6 6 6 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|126465955|ref|YP_001041064.1| - 1.2e-42 146.2 31.1 1.2e-42 146.2 31.1 2.9 1 1 1 2 2 2 1 Proton-conducting membrane transporter UL45 PF05473.12 gi|126465956|ref|YP_001041065.1| - 0.0025 17.5 0.2 0.0028 17.3 0.2 1.2 1 0 0 1 1 1 1 UL45 protein, carbohydrate-binding C-type lectin-like NADHdh PF00146.21 gi|126465957|ref|YP_001041066.1| - 4.2e-40 137.9 25.8 4.8e-40 137.7 25.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|126465958|ref|YP_001041067.1| - 5.7e-63 212.5 0.1 9.2e-47 159.4 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|126465958|ref|YP_001041067.1| - 2.7e-23 82.9 0.2 1.2e-22 80.8 0.1 2.2 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|126465958|ref|YP_001041067.1| - 4.5e-15 55.5 5.4 1.5e-12 47.2 0.1 3.7 2 2 1 3 3 3 2 Nickel-dependent hydrogenase Sec20 PF03908.13 gi|126465958|ref|YP_001041067.1| - 0.12 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Sec20 Fer4_7 PF12838.7 gi|126465959|ref|YP_001041068.1| - 1.8e-17 63.6 38.4 2.4e-11 44.0 11.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|126465959|ref|YP_001041068.1| - 7.9e-16 57.1 17.0 2e-09 36.9 4.7 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126465959|ref|YP_001041068.1| - 3.3e-12 46.3 24.3 1.1e-10 41.5 10.1 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126465959|ref|YP_001041068.1| - 1.8e-10 40.8 8.3 1.8e-10 40.8 8.3 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126465959|ref|YP_001041068.1| - 2e-10 41.4 14.7 2.2e-05 25.3 5.1 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|126465959|ref|YP_001041068.1| - 2.4e-09 36.9 15.7 2.4e-07 30.5 4.7 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126465959|ref|YP_001041068.1| - 1e-08 35.2 10.2 1e-08 35.2 10.2 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126465959|ref|YP_001041068.1| - 3.8e-07 30.5 14.5 0.00012 22.5 1.8 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|126465959|ref|YP_001041068.1| - 5.8e-06 26.1 24.3 6.1e-06 26.0 3.8 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|126465959|ref|YP_001041068.1| - 4.3e-05 24.0 17.4 0.0039 17.7 10.4 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|126465959|ref|YP_001041068.1| - 0.00017 22.3 21.6 0.0022 18.8 5.6 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|126465959|ref|YP_001041068.1| - 0.0005 20.4 1.9 0.0005 20.4 1.9 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126465959|ref|YP_001041068.1| - 0.0038 17.9 11.5 0.023 15.4 0.2 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|126465959|ref|YP_001041068.1| - 0.0099 16.4 4.6 0.0099 16.4 4.6 3.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|126465959|ref|YP_001041068.1| - 0.011 15.9 15.0 0.16 12.2 3.2 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Me-amine-dh_L PF02975.14 gi|126465959|ref|YP_001041068.1| - 0.39 11.2 8.0 4.5 7.8 0.7 2.1 1 1 1 2 2 2 0 Methylamine dehydrogenase, L chain Fer4_22 PF17179.4 gi|126465959|ref|YP_001041068.1| - 1.7 9.5 19.8 0.45 11.4 1.9 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain zf-H2C2_2 PF13465.6 gi|126465959|ref|YP_001041068.1| - 2.1 8.9 0.1 2.1 8.9 0.1 3.9 4 0 0 4 4 4 0 Zinc-finger double domain Oxidored_q6 PF01058.22 gi|126465960|ref|YP_001041069.1| - 2e-23 82.6 0.0 2.5e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HeH PF12949.7 gi|126465960|ref|YP_001041069.1| - 0.037 13.8 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 HeH/LEM domain MrpF_PhaF PF04066.13 gi|126465962|ref|YP_001041071.1| - 2.5e-11 43.8 6.7 2.5e-11 43.8 6.7 1.5 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) TMEM18 PF14770.6 gi|126465962|ref|YP_001041071.1| - 0.076 13.0 0.4 0.076 13.0 0.4 1.9 2 0 0 2 2 2 0 Transmembrane protein 18 PhaG_MnhG_YufB PF03334.14 gi|126465963|ref|YP_001041072.1| - 1e-19 70.6 12.8 1.2e-19 70.3 12.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF2583 PF10762.9 gi|126465963|ref|YP_001041072.1| - 1 9.8 4.3 0.89 10.0 1.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) DUF4040 PF13244.6 gi|126465964|ref|YP_001041073.1| - 1.3e-14 54.1 4.2 1.3e-14 54.1 4.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Proton_antipo_M PF00361.20 gi|126465964|ref|YP_001041073.1| - 0.0017 17.6 2.5 0.0018 17.5 2.5 1.2 1 0 0 1 1 1 1 Proton-conducting membrane transporter DUF5438 PF17506.2 gi|126465964|ref|YP_001041073.1| - 0.027 14.8 1.7 0.048 14.0 1.7 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5438) DUF2070 PF09843.9 gi|126465964|ref|YP_001041073.1| - 0.048 12.0 8.9 0.058 11.7 8.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CreD PF06123.12 gi|126465964|ref|YP_001041073.1| - 0.095 11.5 6.1 0.1 11.4 6.1 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD MnhB PF04039.13 gi|126465965|ref|YP_001041074.1| - 2.2e-19 70.0 11.9 2.2e-19 70.0 11.9 2.0 3 0 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.24 gi|126465966|ref|YP_001041075.1| - 2.1e-22 78.7 0.3 2.9e-22 78.3 0.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Cation_efflux PF01545.21 gi|126465966|ref|YP_001041075.1| - 0.018 14.8 0.7 0.72 9.6 0.1 2.1 2 0 0 2 2 2 0 Cation efflux family MNHE PF01899.16 gi|126465967|ref|YP_001041076.1| - 1.8e-40 138.1 1.6 2e-40 137.9 1.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Phageshock_PspG PF09583.10 gi|126465967|ref|YP_001041076.1| - 0.48 10.7 6.4 0.97 9.8 6.4 1.4 1 0 0 1 1 1 0 Phage shock protein G (Phageshock_PspG) Chitin_synth_2 PF03142.15 gi|126465967|ref|YP_001041076.1| - 0.49 8.9 6.1 0.73 8.4 6.1 1.2 1 0 0 1 1 1 0 Chitin synthase Proton_antipo_M PF00361.20 gi|126465968|ref|YP_001041077.1| - 1.6e-48 165.4 33.6 1.6e-48 165.4 33.6 3.2 2 2 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|126465968|ref|YP_001041077.1| - 3.9e-08 33.0 5.0 3.9e-08 33.0 5.0 3.1 3 1 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|126465968|ref|YP_001041077.1| - 0.00012 22.1 0.3 0.00012 22.1 0.3 3.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF1206 PF06724.11 gi|126465968|ref|YP_001041077.1| - 0.13 12.3 0.1 0.13 12.3 0.1 4.0 4 0 0 4 4 4 0 Domain of Unknown Function (DUF1206) ADH_N PF08240.12 gi|126465969|ref|YP_001041078.1| - 1.6e-33 114.8 0.8 2.8e-33 114.0 0.8 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|126465969|ref|YP_001041078.1| - 6.2e-09 35.9 0.0 1.2e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|126465969|ref|YP_001041078.1| - 0.0012 19.9 0.0 0.002 19.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Rubrerythrin PF02915.17 gi|126465970|ref|YP_001041079.1| - 9.6e-11 42.2 0.2 1.1e-10 42.0 0.2 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|126465970|ref|YP_001041079.1| - 0.00013 22.3 0.2 0.00016 22.0 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|126465970|ref|YP_001041079.1| - 0.01 15.8 0.1 0.013 15.4 0.1 1.2 1 0 0 1 1 1 0 Ferritin-like domain DUF2202 PF09968.9 gi|126465970|ref|YP_001041079.1| - 0.037 13.9 0.1 0.041 13.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) FA_desaturase_2 PF03405.14 gi|126465971|ref|YP_001041080.1| - 4.2e-05 22.5 0.2 0.082 11.7 0.0 2.2 1 1 1 2 2 2 2 Fatty acid desaturase Rubrerythrin PF02915.17 gi|126465971|ref|YP_001041080.1| - 0.00013 22.4 12.9 0.00035 21.0 7.1 2.9 1 1 1 2 2 2 2 Rubrerythrin FCH PF00611.23 gi|126465971|ref|YP_001041080.1| - 0.00066 19.9 4.8 0.0011 19.2 4.8 1.8 1 1 0 1 1 1 1 Fes/CIP4, and EFC/F-BAR homology domain RhoGEF PF00621.20 gi|126465971|ref|YP_001041080.1| - 0.074 13.3 2.0 0.13 12.5 2.0 1.5 1 1 0 1 1 1 0 RhoGEF domain Colicin_Pyocin PF01320.18 gi|126465971|ref|YP_001041080.1| - 0.14 12.3 2.6 0.34 11.0 1.1 2.0 2 0 0 2 2 2 0 Colicin immunity protein / pyocin immunity protein Ferritin PF00210.24 gi|126465971|ref|YP_001041080.1| - 0.57 10.1 7.0 2.4 8.1 1.5 2.2 2 0 0 2 2 2 0 Ferritin-like domain HBS1_N PF08938.10 gi|126465971|ref|YP_001041080.1| - 3.1 8.2 5.5 0.88 9.9 1.4 2.1 2 1 1 3 3 3 0 HBS1 N-terminus SfsA PF03749.13 gi|126465972|ref|YP_001041081.1| - 1e-29 103.2 0.0 1.4e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|126465972|ref|YP_001041081.1| - 2.4e-15 56.4 1.0 2.4e-15 56.4 1.0 1.6 2 0 0 2 2 2 1 SfsA N-terminal OB domain RNA_pol_Rpb2_4 PF04566.13 gi|126465972|ref|YP_001041081.1| - 0.2 12.0 3.6 6.1 7.2 0.0 2.6 2 1 0 2 2 2 0 RNA polymerase Rpb2, domain 4 MFS_1 PF07690.16 gi|126465973|ref|YP_001041082.1| - 5.6e-43 147.2 40.6 2.7e-28 98.9 21.5 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|126465973|ref|YP_001041082.1| - 1.9e-34 119.3 19.6 3e-34 118.7 19.6 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter BT1 PF03092.16 gi|126465973|ref|YP_001041082.1| - 0.0032 15.8 1.4 0.0032 15.8 1.4 1.7 2 0 0 2 2 2 1 BT1 family dUTPase PF00692.19 gi|126465974|ref|YP_001041083.1| - 3.2e-13 49.5 0.0 5.1e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|126465974|ref|YP_001041083.1| - 0.047 12.5 0.0 0.11 11.3 0.0 1.6 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Thy1 PF02511.15 gi|126465975|ref|YP_001041084.1| - 4.6e-59 199.4 0.1 6.6e-59 198.9 0.1 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DUF4116 PF13475.6 gi|126465975|ref|YP_001041084.1| - 0.011 15.4 0.2 21 5.0 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4116) Radical_SAM PF04055.21 gi|126465976|ref|YP_001041085.1| - 2.9e-16 60.3 0.0 4.9e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|126465976|ref|YP_001041085.1| - 7.2e-10 39.0 0.1 1.4e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|126465976|ref|YP_001041085.1| - 2.1e-09 37.8 0.0 3.2e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ferritin PF00210.24 gi|126465976|ref|YP_001041085.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain NRDD PF13597.6 gi|126465977|ref|YP_001041086.1| - 1.2e-151 506.3 0.0 1.5e-151 506.0 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|126465977|ref|YP_001041086.1| - 0.00064 19.7 0.1 0.0013 18.7 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|126465977|ref|YP_001041086.1| - 0.029 14.0 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|126465977|ref|YP_001041086.1| - 0.053 13.6 1.2 0.13 12.4 1.2 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|126465977|ref|YP_001041086.1| - 0.086 12.6 4.0 0.21 11.3 4.0 1.6 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|126465977|ref|YP_001041086.1| - 0.14 12.1 1.9 0.3 11.0 1.9 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) EMG1 PF03587.14 gi|126465978|ref|YP_001041087.1| - 2.3e-56 190.5 0.0 2.7e-56 190.3 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase RecA PF00154.21 gi|126465978|ref|YP_001041087.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein CRS1_YhbY PF01985.21 gi|126465979|ref|YP_001041088.1| - 8e-12 45.2 1.4 1.1e-11 44.8 1.4 1.2 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.19 gi|126465980|ref|YP_001041089.1| - 2.8e-52 176.1 0.0 3.3e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|126465980|ref|YP_001041089.1| - 0.00079 19.3 0.6 0.015 15.2 0.3 2.2 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain SASP PF00269.20 gi|126465980|ref|YP_001041089.1| - 0.024 14.7 0.0 3.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Rrf2 PF02082.20 gi|126465980|ref|YP_001041089.1| - 0.039 14.3 0.3 0.077 13.3 0.3 1.6 1 1 0 1 1 1 0 Transcriptional regulator dsDNA_bind PF01984.20 gi|126465981|ref|YP_001041090.1| - 4.4e-23 81.7 9.1 6.4e-23 81.2 9.1 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|126465981|ref|YP_001041090.1| - 0.00059 19.2 4.4 0.00073 18.9 4.4 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 NCKAP5 PF15246.6 gi|126465981|ref|YP_001041090.1| - 0.01 15.4 0.3 0.013 15.2 0.3 1.0 1 0 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein betaPIX_CC PF16523.5 gi|126465981|ref|YP_001041090.1| - 0.065 13.1 5.6 0.12 12.2 4.1 2.0 2 0 0 2 2 2 0 betaPIX coiled coil RICH PF05062.12 gi|126465981|ref|YP_001041090.1| - 2.4 8.6 9.4 6.7 7.1 0.2 2.6 2 1 1 3 3 3 0 RICH domain Ribosomal_L39 PF00832.20 gi|126465982|ref|YP_001041091.1| - 4.3e-18 64.7 8.9 5.3e-18 64.4 8.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|126465983|ref|YP_001041092.1| - 8.3e-12 45.2 2.3 1.1e-11 44.8 2.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|126465984|ref|YP_001041093.1| - 1.4e-64 217.1 4.1 1.6e-64 216.9 4.1 1.0 1 0 0 1 1 1 1 eIF-6 family ATPgrasp_TupA PF14305.6 gi|126465984|ref|YP_001041093.1| - 0.025 14.4 0.0 0.24 11.1 0.0 2.0 2 0 0 2 2 2 0 TupA-like ATPgrasp Ribosomal_L18A PF01775.17 gi|126465985|ref|YP_001041094.1| - 6.5e-14 52.1 0.2 9.9e-14 51.5 0.2 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|126465986|ref|YP_001041095.1| - 1.8e-14 53.7 1.5 2.5e-14 53.2 1.5 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|126465986|ref|YP_001041095.1| - 2.7e-05 24.1 6.7 0.0017 18.3 1.5 2.2 2 0 0 2 2 2 2 Prefoldin subunit LRR_8 PF13855.6 gi|126465986|ref|YP_001041095.1| - 0.014 15.2 0.3 0.035 13.9 0.3 1.7 1 0 0 1 1 1 0 Leucine rich repeat Tup_N PF08581.10 gi|126465986|ref|YP_001041095.1| - 0.26 11.6 5.4 1.1 9.6 0.3 2.4 2 0 0 2 2 2 0 Tup N-terminal SRP54 PF00448.22 gi|126465987|ref|YP_001041096.1| - 1.5e-72 243.4 0.1 2.2e-72 242.8 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|126465987|ref|YP_001041096.1| - 4.2e-06 26.9 3.2 4.2e-06 26.9 3.2 2.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain MeaB PF03308.16 gi|126465987|ref|YP_001041096.1| - 2.6e-05 23.4 0.5 8.7e-05 21.6 0.2 2.0 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|126465987|ref|YP_001041096.1| - 6.7e-05 22.7 0.0 0.00019 21.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|126465987|ref|YP_001041096.1| - 0.0001 21.9 0.1 0.0003 20.4 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|126465987|ref|YP_001041096.1| - 0.00024 20.9 0.1 0.00036 20.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|126465987|ref|YP_001041096.1| - 0.00035 20.6 2.1 0.0085 16.2 0.1 2.9 3 0 0 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.15 gi|126465987|ref|YP_001041096.1| - 0.00049 20.0 3.1 0.17 11.8 0.0 2.6 2 1 1 3 3 3 2 NTPase ArsA_ATPase PF02374.15 gi|126465987|ref|YP_001041096.1| - 0.00067 18.9 0.8 0.1 11.7 0.1 2.7 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|126465987|ref|YP_001041096.1| - 0.00092 19.6 0.0 0.0034 17.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|126465987|ref|YP_001041096.1| - 0.0061 17.0 0.4 0.033 14.6 0.0 2.3 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.6 gi|126465987|ref|YP_001041096.1| - 0.0062 16.5 1.6 0.088 12.7 0.0 2.9 4 0 0 4 4 4 1 AAA domain AAA_17 PF13207.6 gi|126465987|ref|YP_001041096.1| - 0.011 16.2 0.7 0.054 13.9 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|126465987|ref|YP_001041096.1| - 0.024 14.8 0.1 0.068 13.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|126465987|ref|YP_001041096.1| - 0.057 12.7 0.0 0.14 11.4 0.0 1.7 1 1 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|126465987|ref|YP_001041096.1| - 0.059 13.4 1.3 0.61 10.2 1.3 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|126465987|ref|YP_001041096.1| - 0.14 12.4 0.1 0.26 11.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|126465987|ref|YP_001041096.1| - 0.2 11.9 1.7 1.9 8.8 0.5 2.8 1 1 1 2 2 2 0 AAA domain SecE PF00584.20 gi|298205349|ref|YP_003717801.1| - 0.00018 21.4 0.5 0.00021 21.1 0.5 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|126465988|ref|YP_001041097.1| - 1.1e-20 73.2 0.0 2.1e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|126465988|ref|YP_001041097.1| - 7e-08 32.2 0.7 2.6e-07 30.3 0.1 2.2 2 0 0 2 2 2 1 KOW motif Ribosomal_L11_N PF03946.14 gi|126465989|ref|YP_001041098.1| - 2.5e-24 84.9 0.7 6e-24 83.7 0.7 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|126465989|ref|YP_001041098.1| - 5.3e-18 65.3 1.4 9.2e-18 64.5 1.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|126465990|ref|YP_001041099.1| - 6.3e-40 137.1 0.1 7.5e-40 136.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|126465991|ref|YP_001041100.1| - 7.7e-25 86.9 0.2 2.1e-24 85.6 0.2 1.7 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|126465991|ref|YP_001041100.1| - 8.7e-22 76.9 0.2 2.8e-21 75.3 0.2 1.9 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Cytomega_UL84 PF06284.11 gi|126465991|ref|YP_001041100.1| - 0.71 8.3 3.0 1 7.8 3.0 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein tRNA-synt_2c PF01411.19 gi|126465992|ref|YP_001041101.1| - 4.1e-95 319.4 1.4 1.3e-93 314.4 1.4 2.1 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|126465992|ref|YP_001041101.1| - 6.6e-13 48.5 0.1 1.4e-12 47.5 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|126465992|ref|YP_001041101.1| - 5.4e-06 25.9 0.1 1e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DHHA1 PF02272.19 gi|126465992|ref|YP_001041101.1| - 0.0025 18.3 0.2 0.0067 16.9 0.2 1.8 1 0 0 1 1 1 1 DHHA1 domain Zn-ribbon_8 PF09723.10 gi|126465992|ref|YP_001041101.1| - 0.16 12.1 1.3 0.32 11.1 1.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain TrkH PF02386.16 gi|126465993|ref|YP_001041102.1| - 2.6e-48 164.7 27.0 4.8e-28 97.9 14.2 2.1 1 1 1 2 2 2 2 Cation transport protein Form-deh_trans PF09163.11 gi|126465993|ref|YP_001041102.1| - 3.6 7.4 5.5 17 5.3 0.1 3.8 3 0 0 3 3 3 0 Formate dehydrogenase N, transmembrane Bac_export_2 PF01312.19 gi|126465993|ref|YP_001041102.1| - 9.1 5.4 13.3 0.15 11.2 0.7 3.2 3 0 0 3 3 3 0 FlhB HrpN YscU SpaS Family TrkA_N PF02254.18 gi|126465994|ref|YP_001041103.1| - 3e-17 63.0 0.2 4.6e-17 62.3 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|126465994|ref|YP_001041103.1| - 8.6e-10 38.3 0.1 2.3e-09 36.9 0.1 1.8 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|126465994|ref|YP_001041103.1| - 7e-08 32.9 0.1 1.1e-07 32.2 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|126465994|ref|YP_001041103.1| - 0.0012 19.0 0.1 0.0018 18.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|126465994|ref|YP_001041103.1| - 0.0013 19.3 0.0 0.0024 18.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF3219 PF11514.8 gi|126465994|ref|YP_001041103.1| - 0.013 15.5 0.2 0.054 13.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3219) Sacchrp_dh_NADP PF03435.18 gi|126465994|ref|YP_001041103.1| - 0.018 15.3 0.1 0.033 14.5 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|126465994|ref|YP_001041103.1| - 0.16 12.4 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain EOS1 PF12326.8 gi|126465995|ref|YP_001041104.1| - 0.0062 16.5 3.2 0.0078 16.2 3.2 1.3 1 0 0 1 1 1 1 N-glycosylation protein Radical_SAM PF04055.21 gi|126465996|ref|YP_001041105.1| - 1.8e-26 93.5 0.6 3.8e-26 92.4 0.1 1.8 2 1 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|126465996|ref|YP_001041105.1| - 2.1e-23 82.2 0.2 4.5e-23 81.2 0.2 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|126465996|ref|YP_001041105.1| - 1e-05 25.4 0.2 3.8e-05 23.6 0.0 2.1 3 0 0 3 3 3 1 TRAM domain TRAM_2 PF18693.1 gi|126465996|ref|YP_001041105.1| - 0.00033 20.7 0.1 0.031 14.4 0.0 3.2 3 1 0 3 3 3 1 TRAM domain Methyltransf_FA PF12248.8 gi|126465996|ref|YP_001041105.1| - 0.0027 18.0 0.0 0.0065 16.8 0.0 1.6 1 0 0 1 1 1 1 Farnesoic acid 0-methyl transferase eIF-5_eIF-2B PF01873.17 gi|126465997|ref|YP_001041106.1| - 2.3e-33 114.6 0.0 2.8e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Zn-ribbon_8 PF09723.10 gi|126465997|ref|YP_001041106.1| - 0.0012 18.9 4.4 0.019 15.1 1.6 2.1 1 1 1 2 2 2 2 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|126465997|ref|YP_001041106.1| - 0.0014 18.5 0.9 0.74 9.8 0.3 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|126465997|ref|YP_001041106.1| - 0.0038 17.2 0.1 0.0063 16.5 0.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DpnI PF06044.12 gi|126465997|ref|YP_001041106.1| - 0.019 14.6 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Dam-replacing family zf-TFIIB PF13453.6 gi|126465997|ref|YP_001041106.1| - 0.02 14.2 0.4 0.032 13.6 0.4 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|126465997|ref|YP_001041106.1| - 0.054 13.9 0.4 0.092 13.1 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|126465997|ref|YP_001041106.1| - 0.069 13.2 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|126465997|ref|YP_001041106.1| - 0.075 13.1 2.1 0.29 11.2 0.1 2.2 1 1 1 2 2 2 0 CpXC protein zf-RRN7 PF11781.8 gi|126465997|ref|YP_001041106.1| - 0.096 12.4 0.2 7.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Elf1 PF05129.13 gi|126465997|ref|YP_001041106.1| - 0.097 12.7 0.4 0.17 11.9 0.4 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RING_7 PF02591.15 gi|126465997|ref|YP_001041106.1| - 0.099 12.8 0.6 8 6.8 0.0 2.4 1 1 1 2 2 2 0 C4-type zinc ribbon domain BTB_3 PF16017.5 gi|126465997|ref|YP_001041106.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 BTB/POZ domain HypA PF01155.19 gi|126465997|ref|YP_001041106.1| - 0.12 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3797 PF12677.7 gi|126465997|ref|YP_001041106.1| - 0.13 12.1 1.7 0.38 10.7 1.7 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) Nudix_N_2 PF14803.6 gi|126465997|ref|YP_001041106.1| - 0.2 11.6 1.9 6.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|126465997|ref|YP_001041106.1| - 0.25 10.8 1.7 1.6 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|126465997|ref|YP_001041106.1| - 0.52 10.2 3.0 19 5.2 0.1 2.3 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.6 gi|126465997|ref|YP_001041106.1| - 0.53 11.0 3.1 1.5 9.6 1.5 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.13 gi|126465997|ref|YP_001041106.1| - 0.94 9.2 3.4 5.1 6.9 0.3 2.1 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|126465997|ref|YP_001041106.1| - 1.9 8.2 4.2 31 4.3 4.2 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|126465997|ref|YP_001041106.1| - 2.3 8.2 4.8 8.9 6.3 3.7 2.4 2 1 0 2 2 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|126465997|ref|YP_001041106.1| - 5 7.0 5.8 6.5 6.6 0.5 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF424 PF04242.13 gi|126465998|ref|YP_001041107.1| - 9.4e-29 99.5 0.1 1.1e-28 99.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.13 gi|126465999|ref|YP_001041108.1| - 3.8e-39 134.6 0.0 5.2e-39 134.2 0.0 1.2 1 0 0 1 1 1 1 NMD3 family zf-ACC PF17848.1 gi|126465999|ref|YP_001041108.1| - 0.0066 16.5 3.8 2.1 8.5 0.0 2.8 3 0 0 3 3 3 2 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|126465999|ref|YP_001041108.1| - 0.028 14.4 1.2 0.69 10.0 0.7 2.6 2 1 0 2 2 2 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|126465999|ref|YP_001041108.1| - 0.41 10.6 5.2 16 5.5 0.1 3.4 3 0 0 3 3 3 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|126465999|ref|YP_001041108.1| - 0.94 9.0 6.8 17 5.0 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|126465999|ref|YP_001041108.1| - 2.3 8.1 9.6 17 5.3 1.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|126465999|ref|YP_001041108.1| - 2.8 7.6 4.2 31 4.3 0.1 3.0 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|126465999|ref|YP_001041108.1| - 6 6.9 8.1 21 5.2 0.6 3.3 3 0 0 3 3 3 0 YhfH-like protein eIF-1a PF01176.19 gi|126466000|ref|YP_001041109.1| - 3.7e-19 68.3 1.1 5e-19 67.9 1.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF3830 PF12903.7 gi|126466000|ref|YP_001041109.1| - 0.2 11.3 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3830) RIO1 PF01163.22 gi|126466001|ref|YP_001041110.1| - 3.7e-58 196.2 0.0 5.1e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|126466001|ref|YP_001041110.1| - 0.0002 20.8 0.0 0.0068 15.8 0.0 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|126466001|ref|YP_001041110.1| - 0.00032 20.7 0.0 0.0028 17.6 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|126466001|ref|YP_001041110.1| - 0.0011 17.8 0.3 0.0017 17.2 0.3 1.2 1 0 0 1 1 1 1 Fungal protein kinase Pkinase PF00069.25 gi|126466001|ref|YP_001041110.1| - 0.0014 18.0 1.1 0.0022 17.4 0.2 1.7 2 0 0 2 2 2 1 Protein kinase domain DUF5344 PF17279.2 gi|126466001|ref|YP_001041110.1| - 0.13 12.9 0.0 0.64 10.6 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5344) Fructosamin_kin PF03881.14 gi|126466001|ref|YP_001041110.1| - 0.13 11.4 0.0 0.32 10.2 0.0 1.5 1 1 0 1 1 1 0 Fructosamine kinase KH_1 PF00013.29 gi|126466002|ref|YP_001041111.1| - 1.1e-10 41.1 2.9 0.00018 21.2 0.6 2.3 2 0 0 2 2 2 2 KH domain DUF5600 PF18150.1 gi|126466002|ref|YP_001041111.1| - 0.062 13.9 0.0 0.31 11.7 0.0 2.0 2 2 0 2 2 2 0 Domain of unknown function (DUF5600) KH_8 PF17903.1 gi|126466002|ref|YP_001041111.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Krr1 KH1 domain KH_2 PF07650.17 gi|126466002|ref|YP_001041111.1| - 1.9 8.4 6.3 17 5.3 0.2 2.6 2 1 0 2 2 2 0 KH domain GCV_H PF01597.19 gi|126466004|ref|YP_001041113.1| - 7.7e-44 148.5 1.0 9.2e-44 148.3 1.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|126466004|ref|YP_001041113.1| - 0.0047 16.7 0.4 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|126466004|ref|YP_001041113.1| - 0.0095 15.9 0.0 0.02 14.8 0.0 1.5 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SHMT PF00464.19 gi|126466005|ref|YP_001041114.1| - 8.1e-73 245.3 0.2 1e-72 244.9 0.2 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|126466005|ref|YP_001041114.1| - 4.3e-09 36.0 0.0 1.1e-08 34.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|126466005|ref|YP_001041114.1| - 1.1e-06 28.2 0.0 2e-06 27.3 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|126466005|ref|YP_001041114.1| - 6.4e-06 25.4 0.6 8.7e-06 24.9 0.6 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|126466005|ref|YP_001041114.1| - 0.005 15.4 0.2 0.0099 14.4 0.2 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AvrE_T3Es PF11725.8 gi|126466005|ref|YP_001041114.1| - 0.0056 14.0 0.1 0.0073 13.6 0.1 1.1 1 0 0 1 1 1 1 AvrE-family Type-III effector proteins (T3Es) DegT_DnrJ_EryC1 PF01041.17 gi|126466005|ref|YP_001041114.1| - 0.0081 15.5 0.7 0.02 14.2 0.7 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|126466005|ref|YP_001041114.1| - 0.098 11.6 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase NAD_kinase PF01513.21 gi|126466006|ref|YP_001041115.1| - 1.1e-52 179.1 0.8 1.2e-52 178.9 0.8 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|126466006|ref|YP_001041115.1| - 1.6e-07 31.0 0.3 4.4e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|126466006|ref|YP_001041115.1| - 0.072 12.4 0.4 0.28 10.5 0.0 2.0 2 0 0 2 2 2 0 Phosphofructokinase Peripla_BP_6 PF13458.6 gi|126466006|ref|YP_001041115.1| - 0.15 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein GCV_T PF01571.21 gi|126466007|ref|YP_001041116.1| - 6.8e-65 219.0 0.0 8.9e-65 218.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|126466007|ref|YP_001041116.1| - 4.9e-15 55.2 0.0 8.9e-15 54.4 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GDC-P PF02347.16 gi|126466008|ref|YP_001041117.1| - 9e-118 393.8 0.0 1.1e-117 393.6 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|126466008|ref|YP_001041117.1| - 0.0067 15.4 0.1 0.014 14.4 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|126466008|ref|YP_001041117.1| - 0.026 13.1 0.0 0.039 12.5 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GDC-P PF02347.16 gi|126466009|ref|YP_001041118.1| - 6.6e-11 41.7 0.0 5.9e-10 38.5 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|126466009|ref|YP_001041118.1| - 1.1e-06 27.9 0.0 1.8e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|126466009|ref|YP_001041118.1| - 0.002 17.4 0.0 0.0038 16.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II Pyr_redox_2 PF07992.14 gi|126466010|ref|YP_001041119.1| - 1.6e-67 227.8 0.4 3.5e-67 226.7 0.4 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126466010|ref|YP_001041119.1| - 2e-23 82.7 8.9 6.9e-20 71.4 0.2 3.2 4 0 0 4 4 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|126466010|ref|YP_001041119.1| - 1.5e-16 60.5 5.9 1.7e-15 57.1 5.9 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|126466010|ref|YP_001041119.1| - 2.6e-15 56.6 0.0 7.7e-15 55.1 0.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_oxidored PF12831.7 gi|126466010|ref|YP_001041119.1| - 2e-11 43.9 3.3 6.3e-08 32.4 0.0 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|126466010|ref|YP_001041119.1| - 4.6e-11 42.4 16.0 1.7e-07 30.7 1.0 3.4 2 2 1 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|126466010|ref|YP_001041119.1| - 2.5e-10 40.0 3.4 1.6e-06 27.5 0.1 3.3 3 0 0 3 3 3 2 Thi4 family FAD_binding_2 PF00890.24 gi|126466010|ref|YP_001041119.1| - 9.8e-10 38.1 7.9 5.7e-06 25.7 1.6 3.2 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|126466010|ref|YP_001041119.1| - 1.3e-09 38.2 3.1 7.2e-05 22.9 0.5 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|126466010|ref|YP_001041119.1| - 1.5e-09 37.9 13.6 0.00017 21.3 3.0 3.3 3 1 0 3 3 3 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|126466010|ref|YP_001041119.1| - 5.1e-09 35.7 0.8 1.5e-05 24.4 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|126466010|ref|YP_001041119.1| - 8e-09 34.7 7.3 0.015 14.1 0.5 3.3 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_3 PF01494.19 gi|126466010|ref|YP_001041119.1| - 2e-08 33.9 1.1 0.0012 18.2 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 gi|126466010|ref|YP_001041119.1| - 3.1e-08 33.7 1.6 6.6e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|126466010|ref|YP_001041119.1| - 2.1e-06 28.1 0.1 0.00029 21.2 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|126466010|ref|YP_001041119.1| - 0.0015 17.5 3.2 0.1 11.4 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Amino_oxidase PF01593.24 gi|126466010|ref|YP_001041119.1| - 0.002 17.5 0.2 0.1 11.9 0.0 3.0 4 0 0 4 4 4 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|126466010|ref|YP_001041119.1| - 0.0021 17.2 5.2 1.3 7.9 0.5 3.1 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|126466010|ref|YP_001041119.1| - 0.0072 16.3 1.0 0.74 9.8 0.0 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|126466010|ref|YP_001041119.1| - 0.042 13.2 0.1 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|126466010|ref|YP_001041119.1| - 0.065 12.6 2.0 5.7 6.2 0.2 2.7 3 0 0 3 3 3 0 ThiF family ApbA PF02558.16 gi|126466010|ref|YP_001041119.1| - 0.078 12.6 1.9 0.66 9.6 0.0 2.3 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UPF0227 PF05728.12 gi|126466010|ref|YP_001041119.1| - 0.11 12.5 0.1 12 5.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) MCRA PF06100.11 gi|126466010|ref|YP_001041119.1| - 0.11 11.2 0.6 6.4 5.4 0.1 2.2 2 0 0 2 2 2 0 MCRA family TrkA_N PF02254.18 gi|126466010|ref|YP_001041119.1| - 0.12 12.6 2.0 1.1 9.5 0.1 2.5 2 0 0 2 2 2 0 TrkA-N domain XdhC_C PF13478.6 gi|126466010|ref|YP_001041119.1| - 0.19 12.3 0.1 5.9 7.4 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|126466010|ref|YP_001041119.1| - 0.28 10.7 11.7 2.4 7.7 4.3 3.0 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF2139 PF09910.9 gi|126466011|ref|YP_001041120.1| - 9.1e-158 524.8 0.1 1.1e-157 524.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) EFP_N PF08207.12 gi|126466012|ref|YP_001041121.1| - 6e-08 32.6 0.2 2.5e-06 27.4 0.0 2.4 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|126466012|ref|YP_001041121.1| - 7.3e-08 32.4 0.6 1.1e-07 31.9 0.6 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|126466012|ref|YP_001041121.1| - 0.0042 17.1 0.2 0.0074 16.3 0.2 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain PrmA PF06325.13 gi|126466013|ref|YP_001041122.1| - 2.2e-05 24.0 0.0 3.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_30 PF05430.11 gi|126466013|ref|YP_001041122.1| - 0.00052 19.9 0.0 0.00086 19.2 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.6 gi|126466013|ref|YP_001041122.1| - 0.0049 16.7 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126466013|ref|YP_001041122.1| - 0.071 13.8 0.0 0.13 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TPP_enzyme_M PF00205.22 gi|126466013|ref|YP_001041122.1| - 0.074 12.8 0.1 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain CN_hydrolase PF00795.22 gi|126466015|ref|YP_001041124.1| - 0.012 14.9 0.0 0.045 13.1 0.0 1.7 1 1 1 2 2 2 0 Carbon-nitrogen hydrolase Topoisom_bac PF01131.20 gi|126466016|ref|YP_001041125.1| - 1.2e-78 264.9 0.3 2.3e-78 264.0 0.3 1.5 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|126466016|ref|YP_001041125.1| - 3.4e-24 85.0 1.6 1.7e-23 82.8 0.0 3.1 3 0 0 3 3 3 1 Toprim domain Helicase_C PF00271.31 gi|126466016|ref|YP_001041125.1| - 4.3e-12 46.3 0.7 5.7e-05 23.4 0.3 4.5 4 1 0 4 4 4 2 Helicase conserved C-terminal domain DEAD PF00270.29 gi|126466016|ref|YP_001041125.1| - 1.1e-10 41.6 0.5 6.7e-10 39.0 0.2 2.6 2 1 0 2 2 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|126466016|ref|YP_001041125.1| - 3.5e-07 30.4 2.0 3.8e-06 27.0 0.3 3.0 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit zf_Rg PF17915.1 gi|126466016|ref|YP_001041125.1| - 1.7e-05 24.1 0.5 1.7e-05 24.1 0.5 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger HypA PF01155.19 gi|126466016|ref|YP_001041125.1| - 0.00037 20.5 1.1 0.01 15.8 0.0 2.8 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|126466016|ref|YP_001041125.1| - 0.00046 20.2 10.9 0.017 15.2 1.6 2.9 2 0 0 2 2 2 2 Zinc ribbon domain DUF3287 PF11690.8 gi|126466016|ref|YP_001041125.1| - 0.0013 18.5 0.7 0.0047 16.7 0.7 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3287) DUF35_N PF12172.8 gi|126466016|ref|YP_001041125.1| - 0.0021 17.9 3.5 0.031 14.1 0.7 2.4 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|126466016|ref|YP_001041125.1| - 0.0023 17.9 0.9 0.0023 17.9 0.9 2.4 2 0 0 2 2 2 1 Double zinc ribbon NRDD PF13597.6 gi|126466016|ref|YP_001041125.1| - 0.0041 16.0 2.6 0.0043 15.9 0.7 2.0 2 0 0 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase Helicase_C_2 PF13307.6 gi|126466016|ref|YP_001041125.1| - 0.012 15.8 0.6 1 9.5 0.0 3.6 4 0 0 4 4 3 0 Helicase C-terminal domain TackOD1 PF18551.1 gi|126466016|ref|YP_001041125.1| - 0.033 13.8 0.4 0.033 13.8 0.4 3.2 3 0 0 3 3 3 0 Thaumarchaeal output domain 1 AAA_22 PF13401.6 gi|126466016|ref|YP_001041125.1| - 0.049 13.9 3.5 2.2 8.6 0.5 4.2 3 1 1 4 4 4 0 AAA domain zf-ribbon_3 PF13248.6 gi|126466016|ref|YP_001041125.1| - 0.053 13.0 12.8 0.025 14.0 3.9 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|126466016|ref|YP_001041125.1| - 0.11 12.8 4.4 1.1 9.6 0.6 2.7 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF1890 PF09001.11 gi|126466016|ref|YP_001041125.1| - 0.15 12.4 0.1 0.83 10.1 0.1 2.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) Gp5_OB PF06714.11 gi|126466016|ref|YP_001041125.1| - 0.16 12.2 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 Gp5 N-terminal OB domain Flavodoxin_1 PF00258.25 gi|126466016|ref|YP_001041125.1| - 0.16 12.2 0.1 0.9 9.7 0.0 2.3 2 0 0 2 2 1 0 Flavodoxin Zn_Tnp_IS91 PF14319.6 gi|126466016|ref|YP_001041125.1| - 0.19 11.8 2.3 11 6.1 0.1 2.6 2 0 0 2 2 2 0 Transposase zinc-binding domain zinc_ribbon_15 PF17032.5 gi|126466016|ref|YP_001041125.1| - 0.27 12.0 3.7 0.13 13.0 0.5 2.1 2 0 0 2 2 1 0 zinc-ribbon family MIP-T3_C PF17749.1 gi|126466016|ref|YP_001041125.1| - 0.3 11.1 5.5 4.3 7.3 0.4 2.6 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Spectrin PF00435.21 gi|126466016|ref|YP_001041125.1| - 0.32 11.5 10.3 0.46 11.0 0.3 3.3 3 0 0 3 3 2 0 Spectrin repeat Cas_Cas4 PF01930.17 gi|126466016|ref|YP_001041125.1| - 1.5 8.9 14.9 0.039 14.1 0.8 4.3 5 0 0 5 5 4 0 Domain of unknown function DUF83 TF_Zn_Ribbon PF08271.12 gi|126466016|ref|YP_001041125.1| - 2.7 7.6 7.8 11 5.7 0.2 3.2 2 1 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|126466016|ref|YP_001041125.1| - 6.6 6.6 15.8 1.1 9.0 6.6 3.0 3 0 0 3 3 3 0 zinc-ribbon domain RasGAP_C PF03836.15 gi|126466016|ref|YP_001041125.1| - 7.1 6.8 14.6 1.2 9.2 0.3 3.7 4 0 0 4 4 3 0 RasGAP C-terminus Histone_HNS PF00816.21 gi|126466016|ref|YP_001041125.1| - 8.1 7.4 5.9 18 6.2 0.3 3.3 3 0 0 3 3 3 0 H-NS histone family ATPase PF06745.13 gi|126466017|ref|YP_001041126.1| - 2.7e-87 291.9 0.0 3.1e-87 291.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|126466017|ref|YP_001041126.1| - 9.4e-06 25.3 0.0 1.6e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|126466017|ref|YP_001041126.1| - 6.5e-05 21.7 0.4 0.0019 16.9 0.1 2.0 2 0 0 2 2 2 1 GvpD gas vesicle protein PPV_E1_C PF00519.17 gi|126466017|ref|YP_001041126.1| - 0.015 14.2 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase Rad51 PF08423.11 gi|126466017|ref|YP_001041126.1| - 0.057 12.7 0.2 0.14 11.4 0.0 1.7 2 0 0 2 2 2 0 Rad51 DUF2075 PF09848.9 gi|126466017|ref|YP_001041126.1| - 0.13 11.4 0.3 0.35 10.0 0.3 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|126466017|ref|YP_001041126.1| - 0.16 12.3 0.1 0.35 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|126466018|ref|YP_001041127.1| - 2.3e-99 329.0 0.0 2.9e-49 166.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|126466018|ref|YP_001041127.1| - 1.9e-40 136.4 2.0 9e-21 73.4 0.2 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|126466018|ref|YP_001041127.1| - 2.1e-30 104.7 1.4 8.3e-30 102.8 1.4 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|126466018|ref|YP_001041127.1| - 1.4e-16 60.6 0.0 2.1e-08 34.1 0.0 3.0 3 1 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|126466018|ref|YP_001041127.1| - 2.9e-15 56.8 0.0 1.2e-07 32.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|126466018|ref|YP_001041127.1| - 1.8e-13 51.2 0.2 3.2e-06 27.6 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.17 gi|126466018|ref|YP_001041127.1| - 4.6e-13 48.7 0.5 5.2e-12 45.4 0.2 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.13 gi|126466018|ref|YP_001041127.1| - 1.8e-12 47.2 0.0 5.8e-05 22.5 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|126466018|ref|YP_001041127.1| - 3.7e-12 46.4 0.8 2.6e-05 24.3 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|126466018|ref|YP_001041127.1| - 1.2e-11 45.0 1.1 0.0058 16.9 0.0 4.1 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|126466018|ref|YP_001041127.1| - 6.5e-11 42.6 0.0 0.00024 21.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|126466018|ref|YP_001041127.1| - 8.2e-10 38.5 0.2 0.00017 21.5 0.0 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|126466018|ref|YP_001041127.1| - 5.1e-09 36.3 0.0 0.00036 20.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|126466018|ref|YP_001041127.1| - 1.1e-08 35.7 0.1 0.0022 18.6 0.0 3.2 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|126466018|ref|YP_001041127.1| - 1.2e-08 34.9 0.0 0.007 16.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|126466018|ref|YP_001041127.1| - 3.7e-08 33.8 0.0 0.0045 17.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|126466018|ref|YP_001041127.1| - 1.8e-07 31.5 0.0 0.0039 17.6 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|126466018|ref|YP_001041127.1| - 2.5e-07 30.3 0.7 0.016 14.6 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|126466018|ref|YP_001041127.1| - 5e-07 29.5 3.7 0.26 10.8 0.6 4.4 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|126466018|ref|YP_001041127.1| - 2.1e-06 27.6 0.0 0.027 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|126466018|ref|YP_001041127.1| - 3.6e-06 27.0 0.1 0.07 13.1 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|126466018|ref|YP_001041127.1| - 9.4e-06 25.5 0.0 0.081 12.8 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|126466018|ref|YP_001041127.1| - 1.1e-05 25.0 0.2 0.33 10.3 0.0 3.4 3 0 0 3 3 3 2 KaiC Sigma54_activat PF00158.26 gi|126466018|ref|YP_001041127.1| - 2.9e-05 23.8 0.0 0.66 9.7 0.0 3.4 2 1 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.13 gi|126466018|ref|YP_001041127.1| - 3e-05 23.3 0.0 0.19 10.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|126466018|ref|YP_001041127.1| - 3.2e-05 23.9 0.0 0.003 17.4 0.0 2.7 3 0 0 3 3 2 1 Bacterial dnaA protein Zeta_toxin PF06414.12 gi|126466018|ref|YP_001041127.1| - 4.3e-05 22.9 0.2 0.27 10.5 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|126466018|ref|YP_001041127.1| - 4.8e-05 23.0 0.0 0.23 10.9 0.0 2.5 2 1 0 2 2 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|126466018|ref|YP_001041127.1| - 5e-05 23.8 0.0 0.56 10.7 0.0 2.7 2 0 0 2 2 2 2 ABC transporter Parvo_NS1 PF01057.17 gi|126466018|ref|YP_001041127.1| - 5.5e-05 22.4 0.2 0.053 12.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 ATPase_2 PF01637.18 gi|126466018|ref|YP_001041127.1| - 5.8e-05 23.1 0.0 0.026 14.5 0.0 3.0 3 0 0 3 3 2 1 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|126466018|ref|YP_001041127.1| - 0.00011 21.7 1.2 0.27 10.7 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein Molydop_binding PF01568.21 gi|126466018|ref|YP_001041127.1| - 0.00018 21.5 0.1 0.00047 20.2 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain NACHT PF05729.12 gi|126466018|ref|YP_001041127.1| - 0.00026 21.0 1.3 0.5 10.3 0.0 3.4 3 1 1 4 4 3 1 NACHT domain DUF2075 PF09848.9 gi|126466018|ref|YP_001041127.1| - 0.00041 19.7 0.0 0.19 10.9 0.0 2.5 3 0 0 3 3 2 1 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|126466018|ref|YP_001041127.1| - 0.0006 19.8 0.0 0.89 9.4 0.0 3.1 2 1 0 2 2 2 1 Rad17 P-loop domain Sigma54_activ_2 PF14532.6 gi|126466018|ref|YP_001041127.1| - 0.0015 18.7 0.0 0.99 9.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|126466018|ref|YP_001041127.1| - 0.0015 18.9 0.0 1.3 9.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|126466018|ref|YP_001041127.1| - 0.0016 18.3 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|126466018|ref|YP_001041127.1| - 0.0026 17.5 0.7 2 8.1 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|126466018|ref|YP_001041127.1| - 0.0043 17.4 2.2 3.5 7.9 0.1 3.1 2 1 1 3 3 3 0 AAA domain Cytidylate_kin PF02224.18 gi|126466018|ref|YP_001041127.1| - 0.011 15.5 0.2 5.5 6.7 0.0 2.8 3 0 0 3 3 2 0 Cytidylate kinase T2SSE PF00437.20 gi|126466018|ref|YP_001041127.1| - 0.012 14.7 0.0 2.1 7.3 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_6 PF12774.7 gi|126466018|ref|YP_001041127.1| - 0.013 14.5 0.0 0.4 9.6 0.0 2.4 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region IPT PF01745.16 gi|126466018|ref|YP_001041127.1| - 0.014 14.8 0.4 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase NB-ARC PF00931.22 gi|126466018|ref|YP_001041127.1| - 0.02 14.1 0.1 4.9 6.3 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.9 gi|126466018|ref|YP_001041127.1| - 0.021 14.6 0.0 5.8 6.7 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AFG1_ATPase PF03969.16 gi|126466018|ref|YP_001041127.1| - 0.025 13.5 0.0 6.2 5.6 0.0 2.8 4 0 0 4 4 3 0 AFG1-like ATPase TniB PF05621.11 gi|126466018|ref|YP_001041127.1| - 0.026 13.9 0.0 13 5.2 0.0 3.5 3 1 1 4 4 4 0 Bacterial TniB protein Guanylate_kin PF00625.21 gi|126466018|ref|YP_001041127.1| - 0.049 13.3 0.3 27 4.4 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase AAA_29 PF13555.6 gi|126466018|ref|YP_001041127.1| - 0.063 13.0 0.0 14 5.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.22 gi|126466018|ref|YP_001041127.1| - 0.08 13.1 0.0 16 5.6 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.15 gi|126466018|ref|YP_001041127.1| - 0.084 12.9 0.0 19 5.2 0.0 2.7 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit HEPN_SAV_6107 PF18726.1 gi|126466018|ref|YP_001041127.1| - 0.12 12.9 0.6 1.2 9.6 0.2 2.6 2 0 0 2 2 2 0 SAV_6107-like HEPN KAP_NTPase PF07693.14 gi|126466018|ref|YP_001041127.1| - 0.13 11.4 0.0 10 5.2 0.0 2.8 3 0 0 3 3 3 0 KAP family P-loop domain Viral_helicase1 PF01443.18 gi|126466018|ref|YP_001041127.1| - 0.17 11.6 0.0 6.3 6.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|126466018|ref|YP_001041127.1| - 0.39 10.6 6.1 27 4.6 0.0 4.2 3 1 1 4 4 4 0 NTPase Helicase_RecD PF05127.14 gi|126466019|ref|YP_001041128.1| - 5e-56 189.3 0.0 8.7e-56 188.5 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|126466019|ref|YP_001041128.1| - 1.3e-42 145.8 0.0 5.6e-31 107.7 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|126466019|ref|YP_001041128.1| - 1.4e-30 105.0 0.0 4e-30 103.6 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|126466019|ref|YP_001041128.1| - 2.7e-10 40.4 0.0 5.8e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_1 PF00583.25 gi|126466019|ref|YP_001041128.1| - 0.00045 20.4 0.0 0.0015 18.7 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126466019|ref|YP_001041128.1| - 0.00081 19.8 0.1 0.0043 17.4 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Nucleoporin_C PF03177.14 gi|126466019|ref|YP_001041128.1| - 0.061 12.1 0.2 0.099 11.4 0.2 1.2 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal TniB PF05621.11 gi|126466019|ref|YP_001041128.1| - 0.095 12.1 0.1 3.1 7.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein DEAD PF00270.29 gi|126466019|ref|YP_001041128.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.7 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_11 PF13086.6 gi|126466019|ref|YP_001041128.1| - 0.21 11.3 0.2 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|126466020|ref|YP_001041129.1| - 7.9e-58 195.5 0.0 9.2e-58 195.3 0.0 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|126466020|ref|YP_001041129.1| - 6.7e-08 32.1 0.1 1.1e-07 31.3 0.1 1.5 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|126466020|ref|YP_001041129.1| - 9.2e-07 28.6 0.0 2.1e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|126466020|ref|YP_001041129.1| - 8.1e-06 25.5 0.0 1.2e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|126466020|ref|YP_001041129.1| - 0.00036 19.3 0.1 0.00092 17.9 0.0 1.6 1 1 1 2 2 2 1 GvpD gas vesicle protein MEDS PF14417.6 gi|126466020|ref|YP_001041129.1| - 0.00043 20.2 0.0 0.0007 19.5 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DnaB_C PF03796.15 gi|126466020|ref|YP_001041129.1| - 0.0017 17.8 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|126466020|ref|YP_001041129.1| - 0.0052 16.5 0.0 0.0087 15.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|126466020|ref|YP_001041129.1| - 0.006 16.3 0.1 0.021 14.6 0.0 1.8 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|126466020|ref|YP_001041129.1| - 0.06 13.6 0.1 0.14 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|126466020|ref|YP_001041129.1| - 0.092 12.8 0.0 0.16 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|126466020|ref|YP_001041129.1| - 0.097 11.9 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Flavoprotein PF02441.19 gi|126466022|ref|YP_001041131.1| - 3.6e-24 85.3 0.1 4.8e-24 84.9 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein TIP49_C PF17856.1 gi|126466022|ref|YP_001041131.1| - 0.016 15.4 0.1 0.04 14.1 0.1 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain CDPS PF16715.5 gi|126466022|ref|YP_001041131.1| - 0.19 11.3 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Cyclodipeptide synthase PhoU_div PF01865.16 gi|126466024|ref|YP_001041133.1| - 1.2e-09 37.8 1.2 3.3e-09 36.4 0.2 1.8 1 1 0 2 2 2 1 Protein of unknown function DUF47 Pneumo_ncap PF03246.13 gi|126466024|ref|YP_001041133.1| - 0.04 12.7 0.2 0.06 12.1 0.2 1.2 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein PhoU PF01895.19 gi|126466024|ref|YP_001041133.1| - 0.1 13.1 4.3 0.98 9.9 0.4 2.8 2 1 0 2 2 2 0 PhoU domain HNOB PF07700.15 gi|126466024|ref|YP_001041133.1| - 0.1 12.5 0.2 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 Haem-NO-binding DASH_Dad3 PF08656.10 gi|126466024|ref|YP_001041133.1| - 1 9.5 4.8 2.7 8.1 0.5 2.8 2 1 0 2 2 2 0 DASH complex subunit Dad3 Radical_SAM PF04055.21 gi|126466025|ref|YP_001041134.1| - 9.1e-16 58.7 0.0 1.8e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|126466025|ref|YP_001041134.1| - 1.2e-07 31.7 0.0 2.5e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Laminin_II PF06009.12 gi|126466026|ref|YP_001041135.1| - 0.0082 16.2 0.4 0.03 14.4 0.1 1.9 1 1 1 2 2 2 1 Laminin Domain II FAP206 PF12018.8 gi|126466026|ref|YP_001041135.1| - 0.014 14.9 0.5 0.019 14.5 0.4 1.3 1 1 0 1 1 1 0 Domain of unknown function MazE_antitoxin PF04014.18 gi|126466027|ref|YP_001041136.1| - 1.8e-05 24.5 0.2 4.5e-05 23.3 0.2 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Rad60-SLD PF11976.8 gi|126466027|ref|YP_001041136.1| - 0.0062 16.3 0.7 0.029 14.2 0.7 2.0 1 1 0 1 1 1 1 Ubiquitin-2 like Rad60 SUMO-like Molydop_binding PF01568.21 gi|126466027|ref|YP_001041136.1| - 0.044 13.8 0.0 0.078 13.0 0.0 1.5 1 1 0 1 1 1 0 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|126466027|ref|YP_001041136.1| - 0.071 13.3 0.0 0.34 11.1 0.0 2.0 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain HGTP_anticodon PF03129.20 gi|126466028|ref|YP_001041137.1| - 1.7e-24 85.8 0.6 6.4e-24 83.9 0.1 2.3 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|126466028|ref|YP_001041137.1| - 1.5e-09 38.1 2.0 2e-08 34.4 2.0 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2H2 PF00096.26 gi|126466028|ref|YP_001041137.1| - 0.038 14.4 2.8 11 6.7 0.1 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|126466028|ref|YP_001041137.1| - 0.072 13.2 2.4 1 9.5 2.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.6 gi|126466028|ref|YP_001041137.1| - 0.2 12.6 1.1 81 4.5 0.1 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger DNA_RNApol_7kD PF03604.13 gi|126466028|ref|YP_001041137.1| - 0.42 10.3 1.5 1.4 8.7 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF3258 PF11646.8 gi|126466028|ref|YP_001041137.1| - 0.93 9.7 6.8 0.27 11.4 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF3258 Arginase PF00491.21 gi|126466029|ref|YP_001041138.1| - 7.4e-63 212.7 0.0 8.9e-63 212.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.13 gi|298205350|ref|YP_003717802.1| - 1.1e-07 31.4 5.5 1.4e-06 27.9 5.5 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|298205350|ref|YP_003717802.1| - 1.2e-06 28.5 1.0 1.7e-06 28.1 1.0 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|298205350|ref|YP_003717802.1| - 1.3e-05 25.1 0.6 2e-05 24.4 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|298205350|ref|YP_003717802.1| - 1.3e-05 25.1 2.1 0.00066 19.6 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|298205350|ref|YP_003717802.1| - 0.00072 19.1 1.4 0.027 14.1 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|298205350|ref|YP_003717802.1| - 0.0009 19.2 0.2 0.0009 19.2 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|298205350|ref|YP_003717802.1| - 0.00092 18.8 4.1 0.059 13.1 0.3 2.1 2 0 0 2 2 2 2 zinc-ribbon domain YhfH PF14149.6 gi|298205350|ref|YP_003717802.1| - 0.00099 19.0 1.3 1.1 9.3 0.0 2.1 2 0 0 2 2 2 2 YhfH-like protein zf-ribbon_3 PF13248.6 gi|298205350|ref|YP_003717802.1| - 0.0012 18.2 1.0 0.13 11.7 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|298205350|ref|YP_003717802.1| - 0.0016 18.3 1.1 0.0082 16.1 1.1 1.9 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.6 gi|298205350|ref|YP_003717802.1| - 0.0017 18.0 1.8 1.2 9.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|298205350|ref|YP_003717802.1| - 0.0034 17.4 0.3 0.0057 16.7 0.3 1.4 1 1 0 1 1 1 1 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|298205350|ref|YP_003717802.1| - 0.0041 17.0 1.1 0.41 10.6 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG CpXC PF14353.6 gi|298205350|ref|YP_003717802.1| - 0.0044 17.1 0.9 0.81 9.7 0.1 2.0 1 1 1 2 2 2 1 CpXC protein Zn_ribbon_SprT PF17283.2 gi|298205350|ref|YP_003717802.1| - 0.0045 16.9 3.0 0.81 9.7 0.7 2.2 2 0 0 2 2 2 2 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|298205350|ref|YP_003717802.1| - 0.0049 16.4 0.2 0.0064 16.0 0.2 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|298205350|ref|YP_003717802.1| - 0.0065 16.1 2.1 1.9 8.2 0.5 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-CSL PF05207.13 gi|298205350|ref|YP_003717802.1| - 0.014 15.1 1.9 0.021 14.6 1.9 1.4 1 1 0 1 1 1 0 CSL zinc finger TFIIS_C PF01096.18 gi|298205350|ref|YP_003717802.1| - 0.016 15.1 1.3 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-trcl PF13451.6 gi|298205350|ref|YP_003717802.1| - 0.023 14.6 0.9 2 8.4 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-HIT PF04438.16 gi|298205350|ref|YP_003717802.1| - 0.024 14.5 4.3 0.3 11.0 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Desulfoferrod_N PF06397.12 gi|298205350|ref|YP_003717802.1| - 0.025 14.2 2.1 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain UPF0547 PF10571.9 gi|298205350|ref|YP_003717802.1| - 0.026 14.6 5.6 0.086 12.9 0.9 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.11 gi|298205350|ref|YP_003717802.1| - 0.026 14.7 0.2 0.048 13.8 0.2 1.5 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Mu-like_Com PF10122.9 gi|298205350|ref|YP_003717802.1| - 0.031 13.7 0.8 4.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-LITAF-like PF10601.9 gi|298205350|ref|YP_003717802.1| - 0.031 14.5 0.2 1.2 9.5 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|298205350|ref|YP_003717802.1| - 0.032 14.0 0.5 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ACC PF17848.1 gi|298205350|ref|YP_003717802.1| - 0.041 14.0 2.9 2.4 8.3 0.1 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DiS_P_DiS PF06750.13 gi|298205350|ref|YP_003717802.1| - 0.053 13.6 0.7 0.088 12.9 0.7 1.5 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain YacG PF03884.14 gi|298205350|ref|YP_003717802.1| - 0.053 13.2 0.1 0.67 9.7 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Rubredoxin_2 PF18073.1 gi|298205350|ref|YP_003717802.1| - 0.059 13.1 4.4 2.6 7.8 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_4 PF13894.6 gi|298205350|ref|YP_003717802.1| - 0.068 14.0 1.1 13 7.0 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF35_N PF12172.8 gi|298205350|ref|YP_003717802.1| - 0.075 12.9 3.3 2.6 8.0 0.5 2.7 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PriA_CRR PF18319.1 gi|298205350|ref|YP_003717802.1| - 0.077 13.0 4.4 0.14 12.2 0.7 2.1 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain OrfB_Zn_ribbon PF07282.11 gi|298205350|ref|YP_003717802.1| - 0.08 12.9 2.6 0.61 10.1 2.5 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|298205350|ref|YP_003717802.1| - 0.092 12.7 6.3 0.32 10.9 6.3 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-Mss51 PF13824.6 gi|298205350|ref|YP_003717802.1| - 0.097 12.8 3.2 2.9 8.1 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-tcix PF14952.6 gi|298205350|ref|YP_003717802.1| - 0.11 12.2 2.0 6.1 6.5 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Rubredoxin PF00301.20 gi|298205350|ref|YP_003717802.1| - 0.15 12.1 1.7 9.8 6.3 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_10 PF10058.9 gi|298205350|ref|YP_003717802.1| - 0.15 11.8 2.7 3.8 7.3 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein RNA_POL_M_15KD PF02150.16 gi|298205350|ref|YP_003717802.1| - 0.23 11.3 4.5 3 7.8 0.4 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|298205350|ref|YP_003717802.1| - 0.24 11.6 2.1 1.4 9.1 0.2 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L44 PF00935.19 gi|298205350|ref|YP_003717802.1| - 0.3 11.6 2.1 4.1 7.9 0.2 2.0 2 0 0 2 2 2 0 Ribosomal protein L44 zf-BED PF02892.15 gi|298205350|ref|YP_003717802.1| - 0.31 11.1 2.2 0.43 10.6 0.2 1.9 1 1 1 2 2 2 0 BED zinc finger DUF983 PF06170.12 gi|298205350|ref|YP_003717802.1| - 0.35 11.3 2.4 9.8 6.7 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-LSD1 PF06943.12 gi|298205350|ref|YP_003717802.1| - 0.48 10.3 6.1 0.56 10.1 0.4 2.2 2 0 0 2 2 2 0 LSD1 zinc finger Ribosomal_L37e PF01907.19 gi|298205350|ref|YP_003717802.1| - 0.95 9.7 5.5 6.6 7.0 5.5 2.0 1 1 0 1 1 1 0 Ribosomal protein L37e SUI1 PF01253.22 gi|126466030|ref|YP_001041139.1| - 6e-22 78.0 1.3 7.4e-22 77.7 1.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|126466030|ref|YP_001041139.1| - 0.0013 19.0 1.3 0.0017 18.6 1.2 1.3 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) Cas_VVA1548 PF09652.10 gi|126466030|ref|YP_001041139.1| - 0.089 13.0 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative CRISPR-associated protein (Cas_VVA1548) TFIIB PF00382.19 gi|126466031|ref|YP_001041140.1| - 2.3e-38 130.0 3.8 9.3e-19 67.3 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|126466031|ref|YP_001041140.1| - 4.3e-08 32.5 0.1 7e-08 31.9 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|126466031|ref|YP_001041140.1| - 2.9e-07 30.3 0.0 0.02 14.6 0.2 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.19 gi|126466031|ref|YP_001041140.1| - 3.1e-07 30.5 0.1 0.0077 16.3 0.0 2.5 1 1 1 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|126466031|ref|YP_001041140.1| - 2.6e-05 23.7 1.1 0.002 17.6 0.2 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|126466031|ref|YP_001041140.1| - 0.00011 21.5 0.3 0.034 13.6 0.1 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 gi|126466031|ref|YP_001041140.1| - 0.00094 19.0 0.4 0.014 15.2 0.1 3.2 3 1 0 3 3 3 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|126466031|ref|YP_001041140.1| - 0.0031 17.5 0.1 0.86 9.6 0.0 3.0 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain RB_B PF01857.20 gi|126466031|ref|YP_001041140.1| - 0.0035 17.4 0.1 0.0094 16.0 0.1 1.6 2 0 0 2 2 2 1 Retinoblastoma-associated protein B domain Sigma70_r4_2 PF08281.12 gi|126466031|ref|YP_001041140.1| - 0.005 16.5 0.4 0.12 12.1 0.2 3.3 2 1 1 3 3 3 1 Sigma-70, region 4 TFIIB_C_1 PF18542.1 gi|126466031|ref|YP_001041140.1| - 0.014 15.4 3.5 0.055 13.5 1.1 2.5 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 UPF0253 PF06786.12 gi|126466031|ref|YP_001041140.1| - 0.029 14.7 0.0 0.18 12.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Rrf2 PF02082.20 gi|126466031|ref|YP_001041140.1| - 0.033 14.5 2.2 6.8 7.1 0.1 3.3 1 1 2 3 3 3 0 Transcriptional regulator HTH_11 PF08279.12 gi|126466031|ref|YP_001041140.1| - 0.035 14.0 0.1 0.38 10.7 0.0 2.6 2 0 0 2 2 2 0 HTH domain HTH_8 PF02954.19 gi|126466031|ref|YP_001041140.1| - 0.05 13.4 1.2 7.3 6.5 0.0 4.1 4 1 0 4 4 4 0 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 gi|126466031|ref|YP_001041140.1| - 0.091 12.3 2.0 2.2 7.9 0.0 3.9 4 1 1 5 5 5 0 Winged helix-turn-helix DNA-binding tRNA-synt_2c PF01411.19 gi|126466032|ref|YP_001041141.1| - 2.3e-10 39.6 0.6 2.3e-10 39.6 0.6 1.5 2 0 0 2 2 2 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|126466032|ref|YP_001041141.1| - 1.3e-08 34.8 0.1 2.5e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Zip PF02535.22 gi|126466033|ref|YP_001041142.1| - 7.3e-20 71.4 21.9 1.5e-19 70.4 9.9 2.0 1 1 0 2 2 2 2 ZIP Zinc transporter Lactamase_B PF00753.27 gi|126466034|ref|YP_001041143.1| - 7.1e-11 42.5 0.0 9.3e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126466034|ref|YP_001041143.1| - 1.4e-05 24.7 0.0 2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|126466034|ref|YP_001041143.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain RHH_1 PF01402.21 gi|126466035|ref|YP_001041144.1| - 2.8e-08 33.4 1.4 4.1e-08 32.9 1.4 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|126466035|ref|YP_001041144.1| - 0.00011 22.1 0.7 0.00017 21.5 0.7 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain CopG_antitoxin PF12441.8 gi|126466035|ref|YP_001041144.1| - 0.0058 17.1 0.1 0.0085 16.6 0.1 1.3 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system RelB PF04221.12 gi|126466035|ref|YP_001041144.1| - 0.047 13.7 0.1 0.053 13.5 0.1 1.3 1 1 0 1 1 1 0 RelB antitoxin Glyco_hydro_38N PF01074.22 gi|126466036|ref|YP_001041145.1| - 3.6e-57 193.9 0.1 5.4e-57 193.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|126466036|ref|YP_001041145.1| - 5.1e-40 137.8 0.0 2e-39 135.9 0.0 2.0 3 0 0 3 3 3 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|126466036|ref|YP_001041145.1| - 1.4e-14 54.0 0.0 2.8e-14 53.0 0.0 1.6 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|126466036|ref|YP_001041145.1| - 5.5e-08 32.8 0.1 1.1e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Glyco_hydro_57 PF03065.15 gi|126466036|ref|YP_001041145.1| - 0.00042 19.6 1.4 0.0008 18.7 0.2 1.9 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 DUF3867 PF12983.7 gi|126466036|ref|YP_001041145.1| - 0.0018 18.4 0.2 0.0018 18.4 0.2 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF3867) Gln-synt_C PF00120.24 gi|126466037|ref|YP_001041146.1| - 0.091 11.7 0.0 1.7 7.5 0.0 2.1 1 1 0 2 2 2 0 Glutamine synthetase, catalytic domain Filamin PF00630.19 gi|126466038|ref|YP_001041147.1| - 0.0014 19.4 0.0 0.0016 19.3 0.0 1.1 1 0 0 1 1 1 1 Filamin/ABP280 repeat CarboxypepD_reg PF13620.6 gi|126466038|ref|YP_001041147.1| - 0.0025 18.0 0.0 0.003 17.8 0.0 1.1 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Glyco_hydro_2 PF00703.21 gi|126466038|ref|YP_001041147.1| - 0.085 13.5 0.0 0.12 13.0 0.0 1.4 1 1 0 1 1 1 0 Glycosyl hydrolases family 2 CooC_C PF15976.5 gi|126466038|ref|YP_001041147.1| - 0.16 12.1 0.0 0.22 11.6 0.0 1.4 1 1 0 1 1 1 0 CS1-pili formation C-terminal Imm32 PF15566.6 gi|126466039|ref|YP_001041148.1| - 0.08 12.7 0.0 0.72 9.7 0.0 2.2 2 0 0 2 2 2 0 Immunity protein 32 ABC_tran PF00005.27 gi|126466040|ref|YP_001041149.1| - 1.2e-32 113.3 0.0 2.2e-32 112.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|126466040|ref|YP_001041149.1| - 5.8e-13 49.5 0.0 1.8e-12 47.9 0.0 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|126466040|ref|YP_001041149.1| - 5.1e-08 33.1 0.8 0.0028 17.5 0.0 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|126466040|ref|YP_001041149.1| - 2e-06 27.9 0.0 5.3e-06 26.5 0.0 1.8 2 0 0 2 2 1 1 TOBE domain SMC_N PF02463.19 gi|126466040|ref|YP_001041149.1| - 1.2e-05 24.9 0.1 7e-05 22.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|126466040|ref|YP_001041149.1| - 0.00029 21.0 0.0 0.00069 19.9 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_23 PF13476.6 gi|126466040|ref|YP_001041149.1| - 0.012 16.1 0.1 0.027 15.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain MIT_C PF16565.5 gi|126466040|ref|YP_001041149.1| - 0.021 14.8 0.0 0.04 13.9 0.0 1.3 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_22 PF13401.6 gi|126466040|ref|YP_001041149.1| - 0.028 14.7 0.0 0.073 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|126466040|ref|YP_001041149.1| - 0.03 14.1 0.0 0.078 12.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|126466040|ref|YP_001041149.1| - 0.035 13.8 0.0 0.092 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|126466040|ref|YP_001041149.1| - 0.057 13.3 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain CysA_C_terminal PF17850.1 gi|126466040|ref|YP_001041149.1| - 0.059 13.9 0.0 0.18 12.4 0.0 1.9 1 0 0 1 1 1 0 CysA C-terminal regulatory domain T2SSE PF00437.20 gi|126466040|ref|YP_001041149.1| - 0.091 11.8 0.0 0.25 10.3 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|126466040|ref|YP_001041149.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|126466040|ref|YP_001041149.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|126466040|ref|YP_001041149.1| - 0.13 12.5 0.1 0.6 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|126466041|ref|YP_001041150.1| - 8.2e-19 68.0 24.1 8.2e-19 68.0 24.1 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|126466042|ref|YP_001041151.1| - 9.4e-13 48.3 26.7 9.4e-13 48.3 26.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ferlin_C PF16165.5 gi|126466042|ref|YP_001041151.1| - 1.3 9.0 6.1 0.41 10.6 1.2 2.4 2 0 0 2 2 2 0 Ferlin C-terminus SBP_bac_1 PF01547.25 gi|126466043|ref|YP_001041152.1| - 3.6e-33 115.9 9.3 5.2e-33 115.3 9.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|126466043|ref|YP_001041152.1| - 2.4e-26 93.2 3.2 3.5e-26 92.7 3.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|126466043|ref|YP_001041152.1| - 4.1e-05 23.4 0.4 0.00071 19.4 0.4 2.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|126466043|ref|YP_001041152.1| - 0.0077 15.7 1.5 0.034 13.5 0.6 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein RE_LlaMI PF09562.10 gi|126466043|ref|YP_001041152.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 LlaMI restriction endonuclease DUF2749 PF10907.8 gi|126466043|ref|YP_001041152.1| - 0.35 11.1 2.3 1 9.6 2.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) OrfB_Zn_ribbon PF07282.11 gi|126466044|ref|YP_001041153.1| - 7.2e-09 35.4 0.0 2e-08 34.0 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvC_1 PF18516.1 gi|126466044|ref|YP_001041153.1| - 0.031 13.5 1.6 0.062 12.5 1.6 1.4 1 0 0 1 1 1 0 RuvC nuclease domain Hydrolase_3 PF08282.12 gi|126466046|ref|YP_001041155.1| - 1.7e-28 100.0 0.2 1.3e-17 64.4 0.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|126466046|ref|YP_001041155.1| - 4.2e-10 39.6 0.0 1.5e-09 37.7 0.0 1.7 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|126466046|ref|YP_001041155.1| - 8.8e-06 26.3 1.0 0.46 10.9 0.0 3.3 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|126466046|ref|YP_001041155.1| - 1.6e-05 25.3 0.7 2.1 8.6 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|126466046|ref|YP_001041155.1| - 0.0024 18.0 0.1 0.0053 16.9 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126466046|ref|YP_001041155.1| - 0.0091 16.1 7.6 0.013 15.6 0.1 3.4 2 2 1 4 4 4 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|126466046|ref|YP_001041155.1| - 0.016 14.4 0.3 0.11 11.6 0.0 2.2 1 1 1 2 2 2 0 Trehalose-phosphatase NFACT-C PF11923.8 gi|126466046|ref|YP_001041155.1| - 0.03 14.2 0.1 0.052 13.5 0.1 1.5 1 0 0 1 1 1 0 NFACT protein C-terminal domain GHMP_kinases_N PF00288.26 gi|126466047|ref|YP_001041156.1| - 2.9e-12 46.6 0.6 2.9e-12 46.6 0.6 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|126466047|ref|YP_001041156.1| - 1.1e-11 44.9 0.1 4.9e-11 42.9 0.1 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|126466047|ref|YP_001041156.1| - 4.2e-10 39.0 0.0 8.3e-10 38.1 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GalP_UDP_transf PF01087.22 gi|126466048|ref|YP_001041157.1| - 4.7e-28 98.9 0.0 8.1e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|126466048|ref|YP_001041157.1| - 8.9e-18 64.6 0.1 1.4e-17 63.9 0.1 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4931 PF16285.5 gi|126466048|ref|YP_001041157.1| - 9.5e-07 28.4 0.0 4.9e-05 22.7 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4931) DcpS_C PF11969.8 gi|126466048|ref|YP_001041157.1| - 0.0014 19.1 1.9 0.0028 18.1 0.5 2.0 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding DUF4921 PF16268.5 gi|126466048|ref|YP_001041157.1| - 0.015 14.1 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4921) Cytochrome_P460 PF16694.5 gi|126466048|ref|YP_001041157.1| - 0.031 14.6 0.0 0.053 13.9 0.0 1.3 1 0 0 1 1 1 0 Cytochrome P460 HIT PF01230.23 gi|126466048|ref|YP_001041157.1| - 0.16 12.7 0.1 1.2 9.9 0.1 2.0 2 0 0 2 2 2 0 HIT domain tify PF06200.14 gi|126466048|ref|YP_001041157.1| - 0.19 11.1 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 tify domain UbiA PF01040.18 gi|126466049|ref|YP_001041158.1| - 5.1e-34 117.7 15.9 7.1e-34 117.2 15.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family TatC PF00902.18 gi|126466049|ref|YP_001041158.1| - 0.008 16.0 3.5 0.008 16.0 3.5 2.3 2 1 0 2 2 2 1 Sec-independent protein translocase protein (TatC) bact-PGI_C PF10432.9 gi|126466050|ref|YP_001041159.1| - 1.4e-37 129.1 0.0 3.4e-37 127.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|126466050|ref|YP_001041159.1| - 3.6e-08 33.3 0.1 1.4e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 SIS domain YppF PF14178.6 gi|126466050|ref|YP_001041159.1| - 0.025 14.5 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 YppF-like protein DUF2258 PF10015.9 gi|126466054|ref|YP_001041163.1| - 1.2e-30 105.5 1.8 1.3e-30 105.3 0.4 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) DHHA1 PF02272.19 gi|126466055|ref|YP_001041164.1| - 4.5e-16 59.5 0.1 1.3e-15 58.0 0.0 1.7 1 1 1 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|126466055|ref|YP_001041164.1| - 1.6e-05 25.1 0.0 2.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 DHH family Phage_integrase PF00589.22 gi|126466056|ref|YP_001041165.1| - 2.4e-34 118.6 0.4 4.1e-34 117.8 0.4 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|126466056|ref|YP_001041165.1| - 1.4e-11 44.7 0.5 2.6e-09 37.4 0.0 2.4 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.6 gi|126466056|ref|YP_001041165.1| - 5.3e-10 38.7 2.7 8.1e-10 38.1 2.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|126466056|ref|YP_001041165.1| - 2.1e-08 34.1 3.6 3.5e-08 33.4 3.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|126466056|ref|YP_001041165.1| - 2.6e-08 33.0 2.0 4e-08 32.4 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|126466056|ref|YP_001041165.1| - 1e-06 28.6 0.3 1.7e-06 27.9 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Phage_int_SAM_1 PF02899.17 gi|126466056|ref|YP_001041165.1| - 1.8e-06 28.1 0.7 5.2e-05 23.5 0.2 3.0 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_15 PF17032.5 gi|126466056|ref|YP_001041165.1| - 2.5e-05 25.0 0.4 4.7e-05 24.0 0.4 1.5 1 0 0 1 1 1 1 zinc-ribbon family Phage_int_SAM_3 PF14659.6 gi|126466056|ref|YP_001041165.1| - 3.7e-05 23.9 0.0 0.00013 22.1 0.0 2.1 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Rad50_zn_hook PF04423.14 gi|126466056|ref|YP_001041165.1| - 0.0001 22.1 1.8 0.0051 16.6 0.0 3.3 2 1 1 3 3 3 1 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.12 gi|126466056|ref|YP_001041165.1| - 0.0024 17.4 2.2 0.01 15.3 1.7 2.1 1 1 1 2 2 2 2 TFIIB zinc-binding Ribosomal_L32p PF01783.23 gi|126466056|ref|YP_001041165.1| - 0.013 15.7 0.1 0.03 14.6 0.1 1.6 1 0 0 1 1 1 0 Ribosomal L32p protein family zf-RING_7 PF02591.15 gi|126466056|ref|YP_001041165.1| - 0.016 15.3 2.1 0.57 10.4 0.1 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF2116 PF09889.9 gi|126466056|ref|YP_001041165.1| - 0.067 13.2 1.8 0.086 12.8 0.5 1.8 2 0 0 2 2 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Phage_int_SAM_5 PF13102.6 gi|126466056|ref|YP_001041165.1| - 0.069 13.5 0.8 0.48 10.8 0.7 2.4 1 1 2 3 3 3 0 Phage integrase SAM-like domain Phage_int_SAM_6 PF18644.1 gi|126466056|ref|YP_001041165.1| - 0.072 13.1 0.2 0.19 11.7 0.0 1.8 2 0 0 2 2 1 0 Phage integrase SAM-like domain HHH_8 PF14716.6 gi|126466056|ref|YP_001041165.1| - 0.089 13.2 0.0 0.22 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain zinc-ribbons_6 PF07191.12 gi|126466056|ref|YP_001041165.1| - 0.098 12.7 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons KaiA PF07688.12 gi|126466056|ref|YP_001041165.1| - 0.11 12.7 0.1 1.2 9.3 0.0 2.4 2 0 0 2 2 2 0 KaiA C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|126466056|ref|YP_001041165.1| - 0.13 12.2 0.6 3.6 7.6 0.1 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|126466056|ref|YP_001041165.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3090 PF11290.8 gi|126466056|ref|YP_001041165.1| - 0.14 11.9 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) zf_UBZ PF18439.1 gi|126466056|ref|YP_001041165.1| - 0.18 11.5 0.1 0.18 11.5 0.1 2.0 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Peptidase_M15_3 PF08291.11 gi|126466056|ref|YP_001041165.1| - 0.2 11.8 0.0 1.1 9.3 0.0 2.1 2 0 0 2 2 2 0 Peptidase M15 Zn_ribbon_SprT PF17283.2 gi|126466056|ref|YP_001041165.1| - 0.23 11.4 4.7 1.9 8.5 4.7 2.2 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF35_N PF12172.8 gi|126466056|ref|YP_001041165.1| - 0.3 11.0 6.1 0.7 9.8 6.1 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Sgf11 PF08209.11 gi|126466056|ref|YP_001041165.1| - 0.31 10.6 4.1 0.17 11.5 1.5 1.8 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ISL3 PF14690.6 gi|126466056|ref|YP_001041165.1| - 0.44 11.2 5.2 4.4 8.0 0.0 3.0 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.26 gi|126466056|ref|YP_001041165.1| - 0.95 10.1 3.2 31 5.3 0.1 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type HscB_4_cys PF18256.1 gi|126466056|ref|YP_001041165.1| - 1.3 8.9 4.3 2.8 7.8 4.3 1.5 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif DUF1610 PF07754.11 gi|126466056|ref|YP_001041165.1| - 3.8 7.6 6.2 3.1 7.8 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF3970 PF13113.6 gi|126466057|ref|YP_001041166.1| - 0.0088 16.2 1.0 0.095 12.9 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3970) Peptidase_M28 PF04389.17 gi|126466058|ref|YP_001041167.1| - 2.2e-13 50.4 0.1 7.1e-13 48.7 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|126466058|ref|YP_001041167.1| - 0.0012 18.8 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|126466058|ref|YP_001041167.1| - 0.0053 16.5 0.0 0.0083 15.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Fib_alpha PF08702.10 gi|126466058|ref|YP_001041167.1| - 0.96 9.6 5.6 0.78 9.9 0.2 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family tRNA-synt_2b PF00587.25 gi|126466059|ref|YP_001041168.1| - 4.7e-29 101.6 0.0 9.5e-29 100.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|126466059|ref|YP_001041168.1| - 3.8e-23 81.5 0.1 7.5e-23 80.5 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|126466059|ref|YP_001041168.1| - 5.3e-06 26.5 0.0 3.4e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Diphthami_syn_2 PF01902.17 gi|126466061|ref|YP_001041170.1| - 4.1e-52 176.9 0.0 5e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|126466061|ref|YP_001041170.1| - 0.068 12.7 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC PSY3 PF16836.5 gi|126466061|ref|YP_001041170.1| - 0.1 12.1 0.0 0.53 9.8 0.0 1.9 2 0 0 2 2 2 0 Shu complex component Psy3, DNA-binding description EAP30 PF04157.16 gi|126466061|ref|YP_001041170.1| - 0.19 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family Lactamase_B PF00753.27 gi|126466062|ref|YP_001041171.1| - 4e-06 27.0 0.7 9.5e-06 25.7 0.7 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126466062|ref|YP_001041171.1| - 0.00015 21.4 0.0 0.0002 20.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|126466062|ref|YP_001041171.1| - 0.038 13.4 0.1 0.055 12.9 0.1 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Aldolase_II PF00596.21 gi|126466063|ref|YP_001041172.1| - 7.8e-34 117.2 0.1 9e-34 117.0 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain ATP-synt_ab PF00006.25 gi|126466064|ref|YP_001041173.1| - 2.7e-63 213.5 0.0 3.5e-63 213.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|126466064|ref|YP_001041173.1| - 1.7e-06 28.4 0.8 4.1e-06 27.2 0.8 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|126466064|ref|YP_001041173.1| - 0.00019 21.5 0.1 0.00085 19.4 0.3 1.9 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|126466065|ref|YP_001041174.1| - 5.1e-87 291.0 0.0 6.8e-87 290.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|126466065|ref|YP_001041174.1| - 2.6e-41 140.3 0.2 5.9e-41 139.1 0.2 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|126466065|ref|YP_001041174.1| - 7.9e-16 58.3 2.8 2e-15 57.1 2.8 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|126466065|ref|YP_001041174.1| - 0.046 14.0 0.0 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2085 PF09858.9 gi|126466065|ref|YP_001041174.1| - 0.089 13.3 0.0 0.26 11.8 0.0 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) Biotin_lipoyl PF00364.22 gi|126466065|ref|YP_001041174.1| - 0.12 12.2 0.6 0.76 9.6 0.2 2.3 2 0 0 2 2 2 0 Biotin-requiring enzyme DpnII PF04556.12 gi|126466066|ref|YP_001041175.1| - 0.0065 15.8 0.3 0.0077 15.6 0.3 1.1 1 0 0 1 1 1 1 DpnII restriction endonuclease ANF_receptor PF01094.28 gi|126466066|ref|YP_001041175.1| - 0.14 11.3 0.0 0.16 11.1 0.0 1.0 1 0 0 1 1 1 0 Receptor family ligand binding region vATP-synt_AC39 PF01992.16 gi|126466067|ref|YP_001041176.1| - 4.1e-07 29.8 4.9 0.00055 19.5 1.4 2.1 1 1 1 2 2 2 2 ATP synthase (C/AC39) subunit GRIP PF01465.20 gi|126466067|ref|YP_001041176.1| - 2 8.4 8.1 0.59 10.1 1.3 2.8 3 0 0 3 3 3 0 GRIP domain vATP-synt_E PF01991.18 gi|126466068|ref|YP_001041177.1| - 1.2e-17 64.0 16.8 1.5e-17 63.7 16.8 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit FliH PF02108.16 gi|126466068|ref|YP_001041177.1| - 0.00022 21.3 6.5 0.0016 18.5 0.0 2.4 2 1 0 2 2 2 1 Flagellar assembly protein FliH ATP-synt_B PF00430.18 gi|126466068|ref|YP_001041177.1| - 0.00024 21.2 23.1 0.0039 17.3 11.4 2.9 2 1 1 3 3 3 2 ATP synthase B/B' CF(0) DivIVA PF05103.13 gi|126466068|ref|YP_001041177.1| - 0.00033 20.7 15.4 0.031 14.4 4.4 2.5 1 1 1 2 2 2 2 DivIVA protein V-ATPase_G_2 PF16999.5 gi|126466068|ref|YP_001041177.1| - 0.0004 20.7 25.6 0.011 16.1 14.3 2.9 2 1 1 3 3 3 2 Vacuolar (H+)-ATPase G subunit RHD3 PF05879.12 gi|126466068|ref|YP_001041177.1| - 0.019 13.1 3.8 0.022 12.9 3.8 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) HrpE PF06188.12 gi|126466068|ref|YP_001041177.1| - 0.076 12.9 8.3 1.6 8.6 3.2 2.2 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E SIMPL PF04402.14 gi|126466068|ref|YP_001041177.1| - 2.3 8.6 7.5 13 6.2 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF541) Activator-TraM PF11657.8 gi|126466068|ref|YP_001041177.1| - 2.9 7.7 11.8 13 5.6 11.7 1.9 1 1 0 1 1 1 0 Transcriptional activator TraM DUF4065 PF13274.6 gi|126466068|ref|YP_001041177.1| - 8.5 7.3 10.9 24 5.9 6.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4065) ATP-synt_C PF00137.21 gi|126466069|ref|YP_001041178.1| - 2.9e-17 62.7 23.4 1.2e-10 41.6 6.6 2.4 2 0 0 2 2 2 2 ATP synthase subunit C V_ATPase_I PF01496.19 gi|126466070|ref|YP_001041179.1| - 6e-27 93.9 13.6 1.4e-15 56.3 0.1 3.7 4 0 0 4 4 4 3 V-type ATPase 116kDa subunit family NPV_P10 PF05531.12 gi|126466070|ref|YP_001041179.1| - 0.018 15.5 3.3 13 6.3 1.2 3.4 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein TIC20 PF16166.5 gi|126466070|ref|YP_001041179.1| - 0.041 13.7 0.6 2.2 8.0 0.3 2.9 2 0 0 2 2 2 0 Chloroplast import apparatus Tic20-like Baculo_PEP_C PF04513.12 gi|126466070|ref|YP_001041179.1| - 0.095 12.7 4.8 1.3 9.0 1.0 2.4 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|126466070|ref|YP_001041179.1| - 0.14 12.4 5.8 1.2 9.5 0.0 3.6 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) PLU-1 PF08429.11 gi|126466070|ref|YP_001041179.1| - 0.18 11.0 3.5 0.13 11.5 0.9 1.8 2 0 0 2 2 2 0 PLU-1-like protein DUF4315 PF14193.6 gi|126466070|ref|YP_001041179.1| - 0.19 11.8 2.2 3.1 7.9 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4315) BLOC1_2 PF10046.9 gi|126466070|ref|YP_001041179.1| - 0.25 11.6 11.8 1.7 9.0 0.9 3.2 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.25 gi|126466070|ref|YP_001041179.1| - 0.97 9.1 5.3 3.9 7.1 0.4 2.3 2 0 0 2 2 2 0 Syntaxin ALIX_LYPXL_bnd PF13949.6 gi|126466070|ref|YP_001041179.1| - 1.5 8.1 4.4 16 4.6 0.1 2.3 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV DUF1664 PF07889.12 gi|126466070|ref|YP_001041179.1| - 1.5 8.8 11.8 0.2 11.7 1.6 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF1664) DUF4795 PF16043.5 gi|126466070|ref|YP_001041179.1| - 2.1 7.9 5.0 4.8 6.7 1.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) PIN_12 PF16289.5 gi|126466070|ref|YP_001041179.1| - 2.7 8.4 10.4 4.5 7.7 3.6 2.4 2 0 0 2 2 2 0 PIN domain Fib_alpha PF08702.10 gi|126466070|ref|YP_001041179.1| - 3.6 7.8 9.5 6 7.0 2.0 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|126466070|ref|YP_001041179.1| - 4.6 7.2 6.3 6.1 6.9 1.5 2.4 2 1 0 2 2 2 0 Laminin Domain II CdvA PF18822.1 gi|126466070|ref|YP_001041179.1| - 5.3 6.9 12.4 8.9 6.2 3.4 3.3 2 1 1 3 3 3 0 CdvA-like coiled-coil domain DUF2929 PF11151.8 gi|126466070|ref|YP_001041179.1| - 8.3 6.8 14.8 1.8 8.9 6.8 3.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2929) MSA-2c PF12238.8 gi|126466070|ref|YP_001041179.1| - 9.5 6.2 5.7 12 5.8 0.1 2.6 1 1 0 1 1 1 0 Merozoite surface antigen 2c DivIVA PF05103.13 gi|126466071|ref|YP_001041180.1| - 1.7e-05 24.9 11.0 0.017 15.2 3.8 2.1 2 0 0 2 2 2 2 DivIVA protein V-ATPase_G_2 PF16999.5 gi|126466071|ref|YP_001041180.1| - 0.00042 20.7 9.7 0.0045 17.4 3.1 2.2 2 0 0 2 2 2 2 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|126466071|ref|YP_001041180.1| - 0.00074 19.6 10.5 0.006 16.7 3.8 2.0 2 0 0 2 2 2 2 ATP synthase B/B' CF(0) SpoU_sub_bind PF08032.12 gi|126466071|ref|YP_001041180.1| - 0.009 16.3 5.4 0.19 12.0 1.0 2.2 2 0 0 2 2 2 2 RNA 2'-O ribose methyltransferase substrate binding HrpE PF06188.12 gi|126466071|ref|YP_001041180.1| - 0.018 14.9 1.2 0.057 13.3 1.0 1.8 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.13 gi|126466071|ref|YP_001041180.1| - 0.027 15.1 3.0 2.9 8.5 0.5 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) vATP-synt_E PF01991.18 gi|126466071|ref|YP_001041180.1| - 0.028 13.8 16.6 0.057 12.8 9.3 2.1 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit SLS PF14611.6 gi|126466071|ref|YP_001041180.1| - 0.044 13.6 3.4 0.051 13.4 3.4 1.1 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator DUF3552 PF12072.8 gi|126466071|ref|YP_001041180.1| - 0.048 13.1 17.8 0.051 13.0 7.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) V-ATPase_G PF03179.15 gi|126466071|ref|YP_001041180.1| - 0.049 14.2 16.5 0.11 13.0 16.5 1.5 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit GRDP-like PF07173.12 gi|126466071|ref|YP_001041180.1| - 0.11 13.1 0.4 0.14 12.8 0.4 1.1 1 0 0 1 1 1 0 Glycine-rich domain-containing protein-like TCP PF03634.13 gi|126466071|ref|YP_001041180.1| - 0.12 12.9 2.5 0.15 12.6 2.5 1.1 1 0 0 1 1 1 0 TCP family transcription factor Peptidase_M41 PF01434.18 gi|126466071|ref|YP_001041180.1| - 0.23 11.3 9.3 0.92 9.3 0.5 2.0 1 1 1 2 2 2 0 Peptidase family M41 RNase_J_C PF17770.1 gi|126466071|ref|YP_001041180.1| - 0.55 11.3 9.6 6.1 8.0 3.8 2.2 2 0 0 2 2 2 0 Ribonuclease J C-terminal domain RbsD_FucU PF05025.13 gi|126466071|ref|YP_001041180.1| - 0.62 10.5 4.7 0.55 10.7 3.0 1.7 1 1 1 2 2 2 0 RbsD / FucU transport protein family DUF4094 PF13334.6 gi|126466071|ref|YP_001041180.1| - 1.1 9.7 5.2 1.7 9.1 1.2 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4094) zf-C4H2 PF10146.9 gi|126466071|ref|YP_001041180.1| - 1.8 8.8 12.2 5.6 7.2 12.2 1.7 1 1 0 1 1 1 0 Zinc finger-containing protein DCB PF16213.5 gi|126466071|ref|YP_001041180.1| - 1.9 8.1 10.6 4.5 6.9 1.2 2.1 1 1 0 2 2 2 0 Dimerisation and cyclophilin-binding domain of Mon2 FumaraseC_C PF10415.9 gi|126466071|ref|YP_001041180.1| - 6.2 7.3 8.7 0.6 10.6 3.7 1.8 2 1 0 2 2 2 0 Fumarase C C-terminus FAM25 PF15825.5 gi|126466071|ref|YP_001041180.1| - 9 6.7 12.0 0.75 10.2 0.6 2.7 2 1 0 2 2 2 0 FAM25 family DUF61 PF01886.16 gi|126466072|ref|YP_001041181.1| - 1.8e-37 128.2 0.3 2e-37 128.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 ATP-synt_D PF01813.17 gi|126466073|ref|YP_001041182.1| - 2.3e-40 138.5 6.7 2.7e-40 138.3 6.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D NUDIX PF00293.28 gi|126466075|ref|YP_001041184.1| - 8.6e-15 54.9 0.0 1.1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain HTH_24 PF13412.6 gi|126466076|ref|YP_001041185.1| - 0.039 13.5 1.4 0.091 12.3 0.1 2.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HSR PF03172.13 gi|126466076|ref|YP_001041185.1| - 3.2 8.0 7.6 2.7 8.2 0.4 3.4 3 0 0 3 3 3 0 HSR domain LRR_2 PF07723.13 gi|126466078|ref|YP_001041187.1| - 2.3 9.0 5.3 71 4.3 0.0 4.1 4 0 0 4 4 4 0 Leucine Rich Repeat AP_endonuc_2 PF01261.24 gi|126466079|ref|YP_001041188.1| - 1e-16 61.0 0.0 1.2e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|126466079|ref|YP_001041188.1| - 0.00073 18.9 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE CDP-OH_P_transf PF01066.21 gi|126466080|ref|YP_001041189.1| - 5.8e-14 52.6 2.3 5.8e-14 52.6 2.3 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2976 PF11190.8 gi|126466080|ref|YP_001041189.1| - 0.71 9.7 5.1 8.5 6.3 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF2976) DUF87 PF01935.17 gi|126466081|ref|YP_001041190.1| - 5.7e-12 46.2 0.2 6.4e-11 42.8 0.0 2.6 2 1 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|126466081|ref|YP_001041190.1| - 1.6e-08 34.2 0.1 1.9e-07 30.7 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.29 gi|126466081|ref|YP_001041190.1| - 1.1e-06 29.0 0.1 0.0074 16.7 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126466081|ref|YP_001041190.1| - 4.6e-06 26.9 0.0 0.0073 16.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|126466081|ref|YP_001041190.1| - 9.9e-06 25.4 0.0 0.0085 15.9 0.0 3.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase TrwB_AAD_bind PF10412.9 gi|126466081|ref|YP_001041190.1| - 3.2e-05 23.0 0.0 7.9e-05 21.7 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|126466081|ref|YP_001041190.1| - 5.2e-05 22.0 0.0 0.15 10.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) T2SSE PF00437.20 gi|126466081|ref|YP_001041190.1| - 0.0021 17.2 0.0 0.0049 16.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|126466081|ref|YP_001041190.1| - 0.0026 18.3 0.0 0.0082 16.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|126466081|ref|YP_001041190.1| - 0.0031 17.5 0.1 2.2 8.2 0.0 2.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.12 gi|126466081|ref|YP_001041190.1| - 0.0041 16.8 0.9 0.0087 15.7 0.0 2.0 3 0 0 3 3 2 1 Zonular occludens toxin (Zot) AAA_16 PF13191.6 gi|126466081|ref|YP_001041190.1| - 0.0063 16.9 0.0 0.2 12.0 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|126466081|ref|YP_001041190.1| - 0.0078 16.1 0.2 0.3 11.0 0.1 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|126466081|ref|YP_001041190.1| - 0.01 15.9 0.3 0.36 10.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|126466081|ref|YP_001041190.1| - 0.013 14.5 0.0 3.2 6.6 0.0 2.6 3 0 0 3 3 3 0 AAA-like domain NACHT PF05729.12 gi|126466081|ref|YP_001041190.1| - 0.018 15.0 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|126466081|ref|YP_001041190.1| - 0.02 15.4 0.0 0.063 13.8 0.0 1.8 2 0 0 2 2 1 0 ABC transporter AAA_29 PF13555.6 gi|126466081|ref|YP_001041190.1| - 0.021 14.6 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|126466081|ref|YP_001041190.1| - 0.022 14.3 0.1 0.041 13.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Pox_A32 PF04665.12 gi|126466081|ref|YP_001041190.1| - 0.035 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein G-alpha PF00503.20 gi|126466081|ref|YP_001041190.1| - 0.037 13.2 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit DUF2075 PF09848.9 gi|126466081|ref|YP_001041190.1| - 0.041 13.1 0.0 0.99 8.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PduV-EutP PF10662.9 gi|126466081|ref|YP_001041190.1| - 0.076 12.8 0.1 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|126466081|ref|YP_001041190.1| - 0.08 12.5 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|126466081|ref|YP_001041190.1| - 0.081 13.3 0.0 0.23 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain PAC4 PF16093.5 gi|126466081|ref|YP_001041190.1| - 0.11 12.7 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Proteasome assembly chaperone 4 AAA_23 PF13476.6 gi|126466081|ref|YP_001041190.1| - 0.11 12.9 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|126466081|ref|YP_001041190.1| - 0.14 12.0 0.1 0.34 10.8 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|126466081|ref|YP_001041190.1| - 0.22 11.7 0.0 0.46 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NurA PF09376.10 gi|126466082|ref|YP_001041191.1| - 1.1e-09 38.3 1.9 1.8e-09 37.7 1.9 1.4 1 1 0 1 1 1 1 NurA domain ChitinaseA_N PF08329.10 gi|126466083|ref|YP_001041192.1| - 0.064 12.9 0.4 0.4 10.3 0.3 2.0 2 0 0 2 2 2 0 Chitinase A, N-terminal domain ACT_5 PF13710.6 gi|126466083|ref|YP_001041192.1| - 0.13 12.1 0.4 0.48 10.3 0.1 2.1 3 0 0 3 3 3 0 ACT domain Deltameth_res PF16020.5 gi|126466083|ref|YP_001041192.1| - 0.35 10.8 2.4 0.7 9.8 2.4 1.5 1 0 0 1 1 1 0 Deltamethrin resistance Mem_trans PF03547.18 gi|126466084|ref|YP_001041193.1| - 0.005 15.3 2.1 0.005 15.3 2.1 1.5 1 1 0 1 1 1 1 Membrane transport protein DHH PF01368.20 gi|126466085|ref|YP_001041194.1| - 0.012 15.8 0.0 0.034 14.4 0.0 1.7 1 1 0 1 1 1 0 DHH family Hist_deacetyl PF00850.19 gi|126466086|ref|YP_001041195.1| - 9.1e-67 225.7 0.0 1.2e-66 225.3 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain CYTH PF01928.21 gi|126466087|ref|YP_001041196.1| - 6.7e-26 91.3 2.0 9.6e-26 90.8 2.0 1.1 1 0 0 1 1 1 1 CYTH domain NUDIX PF00293.28 gi|126466088|ref|YP_001041197.1| - 7.4e-21 74.6 0.0 8.8e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|126466088|ref|YP_001041197.1| - 0.004 17.1 0.0 0.0051 16.8 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain PDDEXK_1 PF12705.7 gi|126466089|ref|YP_001041198.1| - 2.4e-08 34.2 7.7 2.2e-05 24.5 4.3 3.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|126466089|ref|YP_001041198.1| - 8.8e-07 29.3 0.3 1.7e-06 28.3 0.2 1.5 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|126466089|ref|YP_001041198.1| - 9.1e-06 25.9 2.0 2.4e-05 24.5 2.0 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF83 DUF3799 PF12684.7 gi|126466089|ref|YP_001041198.1| - 0.00021 21.1 0.0 0.043 13.6 0.0 2.5 1 1 1 2 2 2 2 PDDEXK-like domain of unknown function (DUF3799) Dna2 PF08696.11 gi|126466089|ref|YP_001041198.1| - 0.058 13.2 0.0 0.37 10.6 0.0 2.1 1 1 1 2 2 2 0 DNA replication factor Dna2 KIAA1328 PF15369.6 gi|126466089|ref|YP_001041198.1| - 0.18 11.6 0.7 0.29 10.9 0.7 1.3 1 0 0 1 1 1 0 Uncharacterised protein KIAA1328 SAM_adeno_trans PF01887.16 gi|126466090|ref|YP_001041199.1| - 7.7e-81 271.0 0.0 8.7e-81 270.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase TcpA PF05946.12 gi|126466090|ref|YP_001041199.1| - 0.094 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Toxin-coregulated pilus subunit TcpA YonK PF09642.10 gi|126466092|ref|YP_001041201.1| - 0.014 15.6 0.7 0.087 13.0 0.4 2.3 2 0 0 2 2 2 0 YonK protein AFOR_C PF01314.18 gi|126466093|ref|YP_001041202.1| - 8.9e-113 377.2 0.1 1e-112 376.9 0.1 1.0 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|126466093|ref|YP_001041202.1| - 3.8e-77 258.6 0.0 5.8e-77 258.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CTP-dep_RFKase PF01982.16 gi|126466094|ref|YP_001041203.1| - 8.8e-29 100.1 0.0 1e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 ATPase PF06745.13 gi|126466095|ref|YP_001041204.1| - 1.2e-29 103.3 5.6 3.7e-27 95.2 0.6 2.5 2 1 0 2 2 2 2 KaiC DnaB_C PF03796.15 gi|126466095|ref|YP_001041204.1| - 2.8e-09 36.7 0.0 4.4e-07 29.5 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|126466095|ref|YP_001041204.1| - 1.8e-08 34.2 0.0 2.8e-06 27.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|126466095|ref|YP_001041204.1| - 2.3e-08 34.0 0.0 0.00025 20.8 0.0 2.8 2 1 1 3 3 3 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|126466095|ref|YP_001041204.1| - 7.6e-08 32.3 0.2 0.001 18.8 0.2 3.9 3 1 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|126466095|ref|YP_001041204.1| - 2.4e-07 30.8 0.0 0.0081 16.2 0.0 2.6 2 1 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|126466095|ref|YP_001041204.1| - 4.9e-07 30.3 0.0 0.011 16.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_22 PF13401.6 gi|126466095|ref|YP_001041204.1| - 7.9e-07 29.4 0.0 0.012 15.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|126466095|ref|YP_001041204.1| - 1.4e-05 25.6 0.0 0.21 12.0 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 gi|126466095|ref|YP_001041204.1| - 5.7e-05 23.1 0.0 0.2 11.5 0.0 2.6 2 0 0 2 2 2 2 NACHT domain T2SSE PF00437.20 gi|126466095|ref|YP_001041204.1| - 0.00011 21.4 0.3 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|126466095|ref|YP_001041204.1| - 0.00017 21.6 0.8 0.086 12.7 0.0 2.8 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|126466095|ref|YP_001041204.1| - 0.00027 20.9 0.0 0.41 10.6 0.0 2.7 2 1 0 2 2 2 1 Rad17 P-loop domain ResIII PF04851.15 gi|126466095|ref|YP_001041204.1| - 0.00029 20.9 0.0 0.39 10.7 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_35 PF14516.6 gi|126466095|ref|YP_001041204.1| - 0.00046 19.1 0.0 0.27 10.0 0.0 2.6 2 1 1 3 3 3 1 AAA-like domain Zeta_toxin PF06414.12 gi|126466095|ref|YP_001041204.1| - 0.00062 19.1 0.0 0.68 9.2 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin cobW PF02492.19 gi|126466095|ref|YP_001041204.1| - 0.00071 19.2 0.8 0.76 9.3 0.0 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 gi|126466095|ref|YP_001041204.1| - 0.0008 18.8 0.0 0.91 8.7 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.6 gi|126466095|ref|YP_001041204.1| - 0.00088 19.0 3.3 0.31 10.8 0.2 2.9 3 0 0 3 3 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|126466095|ref|YP_001041204.1| - 0.00089 19.2 0.3 0.69 9.8 0.0 2.7 3 0 0 3 3 2 1 RsgA GTPase TsaE PF02367.17 gi|126466095|ref|YP_001041204.1| - 0.00091 19.2 0.0 0.91 9.5 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|126466095|ref|YP_001041204.1| - 0.00099 19.5 0.0 2.1 8.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|126466095|ref|YP_001041204.1| - 0.0011 18.5 0.1 0.66 9.5 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region GvpD PF07088.11 gi|126466095|ref|YP_001041204.1| - 0.0016 17.2 0.9 0.064 11.9 0.2 3.0 3 1 0 3 3 3 1 GvpD gas vesicle protein PRK PF00485.18 gi|126466095|ref|YP_001041204.1| - 0.0018 18.0 0.2 0.21 11.3 0.0 3.1 2 1 1 3 3 3 1 Phosphoribulokinase / Uridine kinase family KAP_NTPase PF07693.14 gi|126466095|ref|YP_001041204.1| - 0.0021 17.3 0.1 0.049 12.9 0.0 2.2 2 0 0 2 2 2 1 KAP family P-loop domain AAA PF00004.29 gi|126466095|ref|YP_001041204.1| - 0.0022 18.4 0.1 3.8 7.9 0.0 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.7 gi|126466095|ref|YP_001041204.1| - 0.0027 16.7 0.4 1 8.2 0.0 2.5 2 1 0 2 2 2 2 AAA-like domain Sigma54_activat PF00158.26 gi|126466095|ref|YP_001041204.1| - 0.0029 17.3 0.0 1.5 8.5 0.0 3.0 2 1 1 3 3 3 1 Sigma-54 interaction domain RNA12 PF10443.9 gi|126466095|ref|YP_001041204.1| - 0.0047 15.7 0.1 2.1 7.0 0.0 2.1 2 0 0 2 2 2 2 RNA12 protein ArsA_ATPase PF02374.15 gi|126466095|ref|YP_001041204.1| - 0.0068 15.6 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_11 PF13086.6 gi|126466095|ref|YP_001041204.1| - 0.0073 16.1 0.0 0.78 9.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|126466095|ref|YP_001041204.1| - 0.009 15.4 0.1 2.6 7.3 0.0 2.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family SRP54 PF00448.22 gi|126466095|ref|YP_001041204.1| - 0.012 15.2 0.0 1.1 8.8 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|126466095|ref|YP_001041204.1| - 0.014 15.8 0.0 2 8.8 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_30 PF13604.6 gi|126466095|ref|YP_001041204.1| - 0.015 15.0 0.0 5.8 6.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|126466095|ref|YP_001041204.1| - 0.017 14.9 0.0 5.6 6.7 0.2 2.9 2 2 1 3 3 3 0 DEAD/DEAH box helicase MeaB PF03308.16 gi|126466095|ref|YP_001041204.1| - 0.017 14.1 0.0 0.44 9.5 0.0 2.5 3 0 0 3 3 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SMC_N PF02463.19 gi|126466095|ref|YP_001041204.1| - 0.021 14.3 2.0 1.9 7.9 0.2 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|126466095|ref|YP_001041204.1| - 0.025 15.1 0.5 4.2 7.9 0.3 2.7 2 1 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|126466095|ref|YP_001041204.1| - 0.034 14.0 0.0 0.084 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_33 PF13671.6 gi|126466095|ref|YP_001041204.1| - 0.035 14.2 0.1 4.7 7.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|126466095|ref|YP_001041204.1| - 0.039 13.2 0.1 0.1 11.8 0.0 1.6 2 0 0 2 2 2 0 TIP49 P-loop domain PhoH PF02562.16 gi|126466095|ref|YP_001041204.1| - 0.048 13.1 0.1 5.3 6.4 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein Adeno_IVa2 PF02456.15 gi|126466095|ref|YP_001041204.1| - 0.063 12.1 0.4 1.1 7.9 0.1 2.2 2 0 0 2 2 2 0 Adenovirus IVa2 protein PPV_E1_C PF00519.17 gi|126466095|ref|YP_001041204.1| - 0.077 11.8 0.1 0.21 10.4 0.0 1.6 2 0 0 2 2 2 0 Papillomavirus helicase DUF87 PF01935.17 gi|126466095|ref|YP_001041204.1| - 0.081 13.0 1.7 3 7.9 0.1 2.8 2 1 0 2 2 2 0 Helicase HerA, central domain SRPRB PF09439.10 gi|126466095|ref|YP_001041204.1| - 0.088 12.2 1.7 5.9 6.3 0.1 3.4 3 1 1 4 4 4 0 Signal recognition particle receptor beta subunit MobB PF03205.14 gi|126466095|ref|YP_001041204.1| - 0.13 12.2 0.2 16 5.4 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_21 PF13304.6 gi|126466095|ref|YP_001041204.1| - 0.17 11.7 1.4 0.3 10.8 0.2 2.0 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system CbiA PF01656.23 gi|126466095|ref|YP_001041204.1| - 0.17 11.9 0.0 0.72 9.9 0.0 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_23 PF13476.6 gi|126466095|ref|YP_001041204.1| - 1.2 9.6 6.3 5.6 7.4 2.2 2.6 2 1 0 2 2 2 0 AAA domain dUTPase PF00692.19 gi|126466097|ref|YP_001041206.1| - 1.6e-11 44.0 0.0 2e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 dUTPase DUF58 PF01882.18 gi|126466098|ref|YP_001041207.1| - 8.1e-14 51.7 0.0 1.4e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 PRC PF05239.16 gi|126466099|ref|YP_001041208.1| - 0.19 11.8 5.9 2.1 8.5 0.4 3.4 3 1 0 3 3 3 0 PRC-barrel domain AAA_3 PF07726.11 gi|126466100|ref|YP_001041209.1| - 8e-55 184.3 0.3 5.9e-53 178.2 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|126466100|ref|YP_001041209.1| - 8.7e-14 51.1 0.0 3e-13 49.4 0.0 1.8 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|126466100|ref|YP_001041209.1| - 4e-12 46.3 0.0 1.4e-11 44.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|126466100|ref|YP_001041209.1| - 8.3e-05 23.0 0.0 0.00035 21.0 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|126466100|ref|YP_001041209.1| - 0.00053 19.7 0.0 0.0042 16.8 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|126466100|ref|YP_001041209.1| - 0.0023 17.7 0.1 0.067 12.9 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|126466100|ref|YP_001041209.1| - 0.0027 17.1 0.0 0.53 9.6 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|126466100|ref|YP_001041209.1| - 0.037 14.4 0.0 0.1 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain MCM PF00493.23 gi|126466100|ref|YP_001041209.1| - 0.079 12.0 0.0 13 4.8 0.0 2.4 2 0 0 2 2 2 0 MCM P-loop domain AAA_19 PF13245.6 gi|126466100|ref|YP_001041209.1| - 0.16 12.3 0.0 9.8 6.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain VWA_2 PF13519.6 gi|126466104|ref|YP_001041213.1| - 7.2e-10 39.5 0.0 1.8e-09 38.2 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|126466104|ref|YP_001041213.1| - 1.4e-07 32.0 0.0 4.8e-07 30.2 0.0 1.9 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|126466104|ref|YP_001041213.1| - 0.032 13.6 0.0 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein YaeQ PF07152.12 gi|126466104|ref|YP_001041213.1| - 0.095 12.3 0.3 0.87 9.2 0.1 2.1 2 0 0 2 2 2 0 YaeQ protein VWA_3 PF13768.6 gi|126466104|ref|YP_001041213.1| - 0.14 12.1 0.0 0.42 10.5 0.0 1.7 1 1 0 1 1 1 0 von Willebrand factor type A domain Aldo_ket_red PF00248.21 gi|126466106|ref|YP_001041215.1| - 6.6e-55 186.4 0.7 9.7e-53 179.3 0.7 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family RHH_8 PF17723.1 gi|126466106|ref|YP_001041215.1| - 0.025 14.8 0.1 0.055 13.7 0.1 1.5 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family TauE PF01925.19 gi|126466107|ref|YP_001041216.1| - 1.3e-49 168.9 29.7 1.5e-49 168.7 29.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE G_glu_transpept PF01019.21 gi|126466108|ref|YP_001041217.1| - 1.6e-94 317.5 0.0 1.9e-94 317.3 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peptidase_C39 PF03412.15 gi|126466108|ref|YP_001041217.1| - 0.0078 16.0 0.0 0.06 13.1 0.0 2.3 3 0 0 3 3 3 1 Peptidase C39 family Ribosomal_S25 PF03297.15 gi|126466109|ref|YP_001041218.1| - 9.9e-08 32.1 0.0 1.1e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 S25 ribosomal protein Blo-t-5 PF11642.8 gi|126466109|ref|YP_001041218.1| - 0.14 12.1 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Mite allergen Blo t 5 Apolipoprotein PF01442.18 gi|126466110|ref|YP_001041219.1| - 9.3e-08 32.2 19.2 7.2e-05 22.7 15.2 2.6 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|126466110|ref|YP_001041219.1| - 8.1e-05 22.7 10.2 0.047 13.7 0.8 3.6 2 1 1 4 4 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Seryl_tRNA_N PF02403.22 gi|126466110|ref|YP_001041219.1| - 0.00037 20.7 19.6 0.00037 20.7 19.6 4.1 1 1 3 4 4 4 1 Seryl-tRNA synthetase N-terminal domain SKA2 PF16740.5 gi|126466110|ref|YP_001041219.1| - 0.00083 19.1 19.1 0.014 15.2 10.1 3.2 2 1 1 3 3 3 2 Spindle and kinetochore-associated protein 2 DUF1664 PF07889.12 gi|126466110|ref|YP_001041219.1| - 0.001 19.1 29.4 0.024 14.7 8.2 4.0 3 1 1 4 4 3 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|126466110|ref|YP_001041219.1| - 0.0023 18.2 9.7 1.7 8.9 0.9 4.1 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) CdvA PF18822.1 gi|126466110|ref|YP_001041219.1| - 0.0057 16.5 7.8 0.0057 16.5 7.8 5.3 3 2 2 6 6 4 1 CdvA-like coiled-coil domain WXG100 PF06013.12 gi|126466110|ref|YP_001041219.1| - 0.0072 16.5 0.8 1.1 9.5 0.3 4.0 2 1 1 3 3 3 1 Proteins of 100 residues with WXG V-SNARE PF05008.15 gi|126466110|ref|YP_001041219.1| - 0.0099 16.2 11.9 0.0099 16.2 11.9 3.3 3 0 0 3 3 1 1 Vesicle transport v-SNARE protein N-terminus ABC_tran_CTD PF16326.5 gi|126466110|ref|YP_001041219.1| - 0.016 15.4 11.8 0.016 15.4 11.8 4.1 3 1 1 4 4 2 0 ABC transporter C-terminal domain DUF3584 PF12128.8 gi|126466110|ref|YP_001041219.1| - 0.02 12.4 22.5 0.03 11.9 22.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NPV_P10 PF05531.12 gi|126466110|ref|YP_001041219.1| - 0.023 15.1 3.2 0.023 15.1 3.2 5.3 3 1 3 6 6 4 0 Nucleopolyhedrovirus P10 protein MscS_porin PF12795.7 gi|126466110|ref|YP_001041219.1| - 0.024 14.2 17.2 0.023 14.3 12.9 2.5 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain ApoLp-III PF07464.11 gi|126466110|ref|YP_001041219.1| - 0.034 14.2 25.2 0.29 11.2 19.1 3.0 2 1 1 3 3 2 0 Apolipophorin-III precursor (apoLp-III) LPP PF04728.13 gi|126466110|ref|YP_001041219.1| - 0.04 14.3 5.6 4.1 7.9 2.1 4.0 2 1 0 2 2 2 0 Lipoprotein leucine-zipper DUF883 PF05957.13 gi|126466110|ref|YP_001041219.1| - 0.05 14.2 15.4 1.2 9.7 6.0 3.9 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) ApoO PF09769.9 gi|126466110|ref|YP_001041219.1| - 0.051 13.5 5.3 2.4 8.1 0.3 2.8 1 1 1 2 2 2 0 Apolipoprotein O HBM PF16591.5 gi|126466110|ref|YP_001041219.1| - 0.052 13.0 11.9 0.12 11.8 7.2 2.8 1 1 1 2 2 2 0 Helical bimodular sensor domain TPR_MLP1_2 PF07926.12 gi|126466110|ref|YP_001041219.1| - 0.056 13.5 32.2 0.37 10.9 20.5 3.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Fzo_mitofusin PF04799.13 gi|126466110|ref|YP_001041219.1| - 0.058 12.9 21.2 1.3 8.6 8.0 3.3 1 1 2 3 3 3 0 fzo-like conserved region DUF489 PF04356.12 gi|126466110|ref|YP_001041219.1| - 0.096 12.7 10.4 0.11 12.5 0.9 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF489) DUF4407 PF14362.6 gi|126466110|ref|YP_001041219.1| - 0.13 11.6 18.3 0.07 12.5 14.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) HIP1_clath_bdg PF16515.5 gi|126466110|ref|YP_001041219.1| - 0.14 12.8 28.1 0.72 10.5 8.8 3.6 2 1 1 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 T3SSipB PF16535.5 gi|126466110|ref|YP_001041219.1| - 0.22 12.0 6.9 1.4 9.4 6.4 2.4 1 1 0 1 1 1 0 Type III cell invasion protein SipB DUF2937 PF11157.8 gi|126466110|ref|YP_001041219.1| - 0.28 10.9 0.7 2.3 7.9 1.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) TMPIT PF07851.13 gi|126466110|ref|YP_001041219.1| - 0.3 10.3 25.8 0.51 9.5 4.4 2.8 1 1 3 4 4 4 0 TMPIT-like protein DUF745 PF05335.13 gi|126466110|ref|YP_001041219.1| - 0.65 9.7 12.2 0.52 10.0 10.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF745) ERM PF00769.19 gi|126466110|ref|YP_001041219.1| - 0.78 9.5 30.4 0.052 13.4 20.0 2.3 2 1 0 2 2 2 0 Ezrin/radixin/moesin family Phage_GPO PF05929.11 gi|126466110|ref|YP_001041219.1| - 0.87 9.2 14.3 0.15 11.7 8.8 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase ArAE_2_N PF10337.9 gi|126466110|ref|YP_001041219.1| - 0.94 8.4 7.8 1.7 7.6 7.8 1.4 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal Exonuc_VII_L PF02601.15 gi|126466110|ref|YP_001041219.1| - 1.4 8.4 17.7 6 6.3 17.7 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit Spectrin PF00435.21 gi|126466110|ref|YP_001041219.1| - 1.6 9.3 20.7 0.19 12.2 12.7 3.1 1 1 2 3 3 3 0 Spectrin repeat DUF2802 PF10975.8 gi|126466110|ref|YP_001041219.1| - 1.8 8.8 6.1 28 4.9 2.0 3.7 2 1 1 3 3 2 0 Protein of unknown function (DUF2802) Laminin_II PF06009.12 gi|126466110|ref|YP_001041219.1| - 2.1 8.3 30.1 0.53 10.3 7.4 3.7 2 1 2 4 4 4 0 Laminin Domain II KxDL PF10241.9 gi|126466110|ref|YP_001041219.1| - 2.2 8.6 25.8 2.6 8.4 3.5 4.6 2 1 3 5 5 4 0 Uncharacterized conserved protein FAM184 PF15665.5 gi|126466110|ref|YP_001041219.1| - 2.2 8.0 30.0 14 5.4 29.2 2.5 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B Lectin_N PF03954.14 gi|126466110|ref|YP_001041219.1| - 2.4 7.9 5.9 3.1 7.5 2.0 2.7 2 1 1 3 3 3 0 Hepatic lectin, N-terminal domain YlqD PF11068.8 gi|126466110|ref|YP_001041219.1| - 2.4 8.5 28.9 0.55 10.6 7.5 3.4 2 1 2 4 4 3 0 YlqD protein IFT57 PF10498.9 gi|126466110|ref|YP_001041219.1| - 2.4 7.0 37.1 0.017 14.1 18.7 3.1 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|126466110|ref|YP_001041219.1| - 2.6 8.2 37.1 0.048 13.8 15.6 3.7 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family ISG65-75 PF11727.8 gi|126466110|ref|YP_001041219.1| - 2.6 7.2 24.0 0.72 9.0 14.4 2.9 1 1 2 3 3 3 0 Invariant surface glycoprotein Cob_adeno_trans PF01923.18 gi|126466110|ref|YP_001041219.1| - 2.9 8.0 11.0 2.4 8.3 5.9 2.7 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Rootletin PF15035.6 gi|126466110|ref|YP_001041219.1| - 2.9 7.9 25.2 8.6 6.3 25.2 1.9 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Dynamitin PF04912.14 gi|126466110|ref|YP_001041219.1| - 3.1 7.0 33.1 1.1 8.5 23.7 3.7 1 1 3 4 4 4 0 Dynamitin Prominin PF05478.11 gi|126466110|ref|YP_001041219.1| - 3.3 5.6 24.2 0.24 9.3 17.7 2.0 1 1 1 2 2 2 0 Prominin AAA_13 PF13166.6 gi|126466110|ref|YP_001041219.1| - 3.9 6.0 37.1 3.3 6.2 16.9 2.3 1 1 1 2 2 2 0 AAA domain Herpes_U30 PF04523.13 gi|126466110|ref|YP_001041219.1| - 3.9 5.2 9.3 17 3.1 9.3 1.9 1 1 0 1 1 1 0 Herpes virus tegument protein U30 GIDA PF01134.22 gi|126466110|ref|YP_001041219.1| - 4.2 6.3 13.8 14 4.7 11.0 2.3 1 1 1 2 2 2 0 Glucose inhibited division protein A Snapin_Pallidin PF14712.6 gi|126466110|ref|YP_001041219.1| - 4.6 7.7 31.9 3.3 8.2 4.5 4.6 2 1 2 4 4 4 0 Snapin/Pallidin Allexi_40kDa PF05549.11 gi|126466110|ref|YP_001041219.1| - 4.6 6.7 18.9 5.3 6.5 3.3 3.1 1 1 2 3 3 3 0 Allexivirus 40kDa protein DUF885 PF05960.11 gi|126466110|ref|YP_001041219.1| - 4.7 6.7 7.7 10 5.7 7.5 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) EspB PF05802.11 gi|126466110|ref|YP_001041219.1| - 9.2 6.2 8.7 62 3.5 5.1 3.0 2 1 1 3 3 3 0 Enterobacterial EspB protein FliD_N PF02465.18 gi|126466110|ref|YP_001041219.1| - 9.5 7.0 14.4 4.9 7.9 2.5 3.5 2 2 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus DUF1614 PF07758.11 gi|126466111|ref|YP_001041220.1| - 1.3e-44 152.2 19.3 2e-44 151.6 19.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) TrkH PF02386.16 gi|126466112|ref|YP_001041221.1| - 9e-36 123.4 33.8 7.7e-28 97.2 12.2 2.7 1 1 2 3 3 3 2 Cation transport protein TrkA_N PF02254.18 gi|126466113|ref|YP_001041222.1| - 1.8e-31 108.8 4.1 3.3e-31 108.0 4.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|126466113|ref|YP_001041222.1| - 3e-08 33.4 5.4 4.9e-07 29.5 0.1 3.3 3 1 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.17 gi|126466113|ref|YP_001041222.1| - 1.5e-06 28.7 3.0 5e-05 23.8 1.5 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|126466113|ref|YP_001041222.1| - 2e-06 27.9 0.2 3.3e-06 27.1 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|126466113|ref|YP_001041222.1| - 2.7e-05 24.5 0.6 5e-05 23.7 0.6 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|126466113|ref|YP_001041222.1| - 0.00057 20.4 0.2 0.0011 19.4 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|126466113|ref|YP_001041222.1| - 0.00082 19.4 0.8 0.0014 18.7 0.8 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|126466113|ref|YP_001041222.1| - 0.0012 19.1 0.6 0.0021 18.3 0.6 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|126466113|ref|YP_001041222.1| - 0.0018 17.8 0.8 0.0026 17.3 0.8 1.1 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.18 gi|126466113|ref|YP_001041222.1| - 0.0045 16.9 0.2 0.0065 16.4 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LpxI_N PF17930.1 gi|126466113|ref|YP_001041222.1| - 0.0048 16.8 1.0 0.021 14.7 0.2 2.3 2 1 1 3 3 3 1 LpxI N-terminal domain Pyr_redox_2 PF07992.14 gi|126466113|ref|YP_001041222.1| - 0.0054 16.0 0.2 0.0068 15.7 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|126466113|ref|YP_001041222.1| - 0.013 15.7 0.1 0.019 15.1 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|126466113|ref|YP_001041222.1| - 0.015 15.2 0.2 0.039 13.9 0.1 1.9 1 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|126466113|ref|YP_001041222.1| - 0.024 14.5 0.5 0.12 12.2 0.1 2.1 1 1 1 2 2 2 0 Rossmann-like domain adh_short PF00106.25 gi|126466113|ref|YP_001041222.1| - 0.028 13.9 0.3 0.039 13.4 0.3 1.2 1 0 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|126466113|ref|YP_001041222.1| - 0.045 13.4 0.3 0.089 12.4 0.2 1.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Epimerase PF01370.21 gi|126466113|ref|YP_001041222.1| - 0.06 12.8 0.1 0.072 12.5 0.1 1.1 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family CbiJ PF02571.14 gi|126466113|ref|YP_001041222.1| - 0.098 12.1 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK GFO_IDH_MocA PF01408.22 gi|126466113|ref|YP_001041222.1| - 0.12 13.1 0.1 0.19 12.6 0.1 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Trp_halogenase PF04820.14 gi|126466113|ref|YP_001041222.1| - 0.24 10.2 0.1 0.32 9.8 0.1 1.1 1 0 0 1 1 1 0 Tryptophan halogenase DUF1191 PF06697.12 gi|126466114|ref|YP_001041223.1| - 0.036 13.9 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1191) Cdc6_C PF09079.11 gi|126466115|ref|YP_001041224.1| - 1.4e-19 69.8 0.0 6.5e-19 67.7 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|126466115|ref|YP_001041224.1| - 7.3e-14 52.2 0.0 1.5e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|126466115|ref|YP_001041224.1| - 9.4e-08 31.7 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|126466115|ref|YP_001041224.1| - 1.4e-06 28.8 0.0 6.8e-06 26.6 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|126466115|ref|YP_001041224.1| - 0.00027 21.3 0.0 0.00055 20.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|126466115|ref|YP_001041224.1| - 0.0063 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|126466115|ref|YP_001041224.1| - 0.033 13.7 0.0 0.072 12.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|126466115|ref|YP_001041224.1| - 0.14 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE HTH_45 PF14947.6 gi|126466116|ref|YP_001041225.1| - 3e-05 23.9 0.1 3.6e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|126466116|ref|YP_001041225.1| - 0.0031 18.0 0.4 0.0033 17.9 0.4 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|126466116|ref|YP_001041225.1| - 0.0038 17.0 0.1 0.025 14.4 0.1 2.0 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|126466116|ref|YP_001041225.1| - 0.013 15.5 0.1 0.02 14.9 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn helix DUF977 PF06163.11 gi|126466116|ref|YP_001041225.1| - 0.027 14.4 0.1 0.03 14.2 0.1 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) MarR_2 PF12802.7 gi|126466116|ref|YP_001041225.1| - 0.029 14.3 0.1 0.038 13.9 0.1 1.1 1 0 0 1 1 1 0 MarR family HemN_C PF06969.16 gi|126466116|ref|YP_001041225.1| - 0.04 14.0 0.3 0.05 13.7 0.3 1.2 1 0 0 1 1 1 0 HemN C-terminal domain Rrf2 PF02082.20 gi|126466116|ref|YP_001041225.1| - 0.07 13.5 0.1 0.08 13.3 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|126466116|ref|YP_001041225.1| - 0.08 12.8 0.6 0.15 12.0 0.6 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA PF00004.29 gi|126466117|ref|YP_001041226.1| - 2.5e-15 57.1 0.0 5.1e-15 56.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|126466117|ref|YP_001041226.1| - 2.5e-08 33.4 0.0 6.4e-08 32.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|126466117|ref|YP_001041226.1| - 1.1e-07 32.0 0.0 3.5e-07 30.3 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|126466117|ref|YP_001041226.1| - 2.9e-07 30.3 0.0 5.2e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|126466117|ref|YP_001041226.1| - 4.9e-06 26.6 0.0 8.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|126466117|ref|YP_001041226.1| - 5.3e-06 26.5 0.0 9.8e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|126466117|ref|YP_001041226.1| - 7.4e-06 26.5 0.0 1.8e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RFC1 PF08519.12 gi|126466117|ref|YP_001041226.1| - 0.00012 22.3 0.0 0.00019 21.6 0.0 1.3 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_2 PF07724.14 gi|126466117|ref|YP_001041226.1| - 0.00031 20.9 0.0 0.00054 20.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|126466117|ref|YP_001041226.1| - 0.00039 20.4 0.0 0.0011 19.0 0.0 1.7 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea DNA_pol3_delta PF06144.13 gi|126466117|ref|YP_001041226.1| - 0.0004 20.2 0.0 0.0011 18.8 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|126466117|ref|YP_001041226.1| - 0.0017 18.7 0.2 0.0045 17.3 0.2 1.9 1 1 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|126466117|ref|YP_001041226.1| - 0.0017 18.7 0.0 0.024 14.9 0.0 2.4 1 1 1 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|126466117|ref|YP_001041226.1| - 0.0017 18.3 0.1 0.0055 16.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial dnaA protein RNA_helicase PF00910.22 gi|126466117|ref|YP_001041226.1| - 0.0046 17.3 0.0 0.011 16.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|126466117|ref|YP_001041226.1| - 0.0051 16.6 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|126466117|ref|YP_001041226.1| - 0.0062 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin PPV_E1_C PF00519.17 gi|126466117|ref|YP_001041226.1| - 0.0093 14.8 0.0 0.017 14.0 0.0 1.4 1 0 0 1 1 1 1 Papillomavirus helicase Viral_helicase1 PF01443.18 gi|126466117|ref|YP_001041226.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 gi|126466117|ref|YP_001041226.1| - 0.023 14.6 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|126466117|ref|YP_001041226.1| - 0.028 14.9 0.0 0.43 11.1 0.0 2.3 1 1 1 2 2 2 0 ABC transporter TsaE PF02367.17 gi|126466117|ref|YP_001041226.1| - 0.029 14.4 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|126466117|ref|YP_001041226.1| - 0.052 13.1 0.0 0.096 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|126466117|ref|YP_001041226.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_6 PF12774.7 gi|126466117|ref|YP_001041226.1| - 0.084 11.8 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region TIP49 PF06068.13 gi|126466117|ref|YP_001041226.1| - 0.097 11.9 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|126466117|ref|YP_001041226.1| - 0.1 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|126466117|ref|YP_001041226.1| - 0.13 11.4 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|126466117|ref|YP_001041226.1| - 0.15 12.6 0.1 0.9 10.1 0.1 2.5 2 1 0 2 2 1 0 AAA domain AAA_23 PF13476.6 gi|126466117|ref|YP_001041226.1| - 0.19 12.2 0.0 0.36 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|126466117|ref|YP_001041226.1| - 0.24 10.8 0.0 0.58 9.6 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rep_fac_C PF08542.11 gi|126466118|ref|YP_001041227.1| - 1.8e-24 85.9 0.7 6.4e-24 84.2 0.0 2.3 3 0 0 3 3 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|126466118|ref|YP_001041227.1| - 1.6e-16 60.5 0.1 1.3e-11 44.5 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|126466118|ref|YP_001041227.1| - 2.1e-16 60.5 0.0 4.2e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|126466118|ref|YP_001041227.1| - 4.1e-08 33.1 0.0 1.3e-07 31.5 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|126466118|ref|YP_001041227.1| - 1.6e-07 31.4 0.0 3e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|126466118|ref|YP_001041227.1| - 4.1e-07 30.2 0.2 1.2e-06 28.7 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 gi|126466118|ref|YP_001041227.1| - 1.2e-06 28.4 0.1 2.5e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_3 PF07726.11 gi|126466118|ref|YP_001041227.1| - 1.5e-06 28.1 0.0 2.8e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126466118|ref|YP_001041227.1| - 2.9e-06 27.8 0.2 0.0016 18.9 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|126466118|ref|YP_001041227.1| - 7.2e-06 26.3 0.7 0.16 12.2 0.0 2.9 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|126466118|ref|YP_001041227.1| - 1.4e-05 25.1 0.0 5.3e-05 23.2 0.0 2.0 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|126466118|ref|YP_001041227.1| - 2.9e-05 24.6 0.2 0.00071 20.1 0.0 2.8 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|126466118|ref|YP_001041227.1| - 5.8e-05 23.1 0.1 0.0012 18.9 0.0 2.3 1 1 1 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|126466118|ref|YP_001041227.1| - 0.00016 21.2 0.1 0.0067 15.8 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|126466118|ref|YP_001041227.1| - 0.0012 18.4 0.1 0.15 11.5 0.0 2.5 1 1 0 2 2 2 1 Bacterial TniB protein IstB_IS21 PF01695.17 gi|126466118|ref|YP_001041227.1| - 0.0021 17.8 0.0 0.0047 16.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein ResIII PF04851.15 gi|126466118|ref|YP_001041227.1| - 0.0024 17.9 0.0 0.0089 16.0 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|126466118|ref|YP_001041227.1| - 0.003 17.1 0.0 0.0045 16.5 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|126466118|ref|YP_001041227.1| - 0.0034 17.5 0.0 0.0062 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|126466118|ref|YP_001041227.1| - 0.0035 17.5 0.1 0.0096 16.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|126466118|ref|YP_001041227.1| - 0.0042 16.6 0.1 0.55 9.7 0.0 2.4 1 1 0 2 2 2 1 PhoH-like protein KTI12 PF08433.10 gi|126466118|ref|YP_001041227.1| - 0.0043 16.5 0.0 0.0088 15.5 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_11 PF13086.6 gi|126466118|ref|YP_001041227.1| - 0.0045 16.8 0.0 0.012 15.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126466118|ref|YP_001041227.1| - 0.0045 16.7 0.9 0.046 13.5 0.8 2.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|126466118|ref|YP_001041227.1| - 0.0057 16.6 0.0 0.013 15.5 0.0 1.6 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|126466118|ref|YP_001041227.1| - 0.0057 16.9 0.0 0.016 15.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|126466118|ref|YP_001041227.1| - 0.0087 15.2 0.0 0.017 14.3 0.0 1.5 2 0 0 2 2 1 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 gi|126466118|ref|YP_001041227.1| - 0.011 15.1 0.0 0.045 13.1 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_25 PF13481.6 gi|126466118|ref|YP_001041227.1| - 0.012 15.2 0.8 0.068 12.7 0.2 2.4 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|126466118|ref|YP_001041227.1| - 0.013 14.6 0.0 0.087 11.9 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|126466118|ref|YP_001041227.1| - 0.013 15.2 0.0 0.046 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|126466118|ref|YP_001041227.1| - 0.019 14.7 0.0 0.85 9.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 gi|126466118|ref|YP_001041227.1| - 0.025 14.7 0.0 0.11 12.6 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|126466118|ref|YP_001041227.1| - 0.027 14.8 0.5 0.25 11.7 0.2 2.6 1 1 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|126466118|ref|YP_001041227.1| - 0.035 13.3 0.0 0.12 11.6 0.0 1.8 2 1 0 2 2 2 0 TIP49 P-loop domain TIP49_C PF17856.1 gi|126466118|ref|YP_001041227.1| - 0.04 14.1 0.1 0.097 12.8 0.1 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain Viral_helicase1 PF01443.18 gi|126466118|ref|YP_001041227.1| - 0.042 13.6 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|126466118|ref|YP_001041227.1| - 0.042 14.2 0.0 0.098 13.1 0.0 1.6 2 0 0 2 2 1 0 RNA helicase NTPase_1 PF03266.15 gi|126466118|ref|YP_001041227.1| - 0.045 13.7 0.0 0.69 9.8 0.0 2.3 1 1 1 2 2 2 0 NTPase Nse4-Nse3_bdg PF15412.6 gi|126466118|ref|YP_001041227.1| - 0.068 13.3 0.0 0.35 11.0 0.0 2.2 2 0 0 2 2 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE NACHT PF05729.12 gi|126466118|ref|YP_001041227.1| - 0.11 12.4 0.0 0.46 10.4 0.0 2.0 1 1 0 1 1 1 0 NACHT domain Sld5 PF05916.11 gi|126466119|ref|YP_001041228.1| - 2.7e-10 40.7 1.1 3.8e-10 40.2 1.1 1.2 1 0 0 1 1 1 1 GINS complex protein SSL_OB PF09199.10 gi|126466119|ref|YP_001041228.1| - 0.083 13.2 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Staphylococcal superantigen-like OB-fold domain MCM PF00493.23 gi|126466120|ref|YP_001041229.1| - 2.6e-95 317.8 0.0 2.8e-64 216.3 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|126466120|ref|YP_001041229.1| - 6.7e-39 132.6 0.0 1.1e-38 131.9 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|126466120|ref|YP_001041229.1| - 1.5e-26 92.7 1.2 3.6e-26 91.4 1.2 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|126466120|ref|YP_001041229.1| - 3.5e-17 62.9 0.1 1.3e-16 61.1 0.1 2.0 1 0 0 1 1 1 1 MCM N-terminal domain Intein_splicing PF14890.6 gi|126466120|ref|YP_001041229.1| - 1.5e-15 57.4 1.3 4.4e-15 55.8 1.3 1.9 1 0 0 1 1 1 1 Intein splicing domain AAA_5 PF07728.14 gi|126466120|ref|YP_001041229.1| - 1.5e-06 28.3 0.2 6.8e-06 26.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|126466120|ref|YP_001041229.1| - 0.0069 16.1 0.8 0.16 11.6 0.0 2.8 2 1 0 2 2 2 1 Sigma-54 interaction domain Imm6 PF14434.6 gi|126466121|ref|YP_001041230.1| - 0.041 13.8 0.1 0.049 13.6 0.1 1.1 1 0 0 1 1 1 0 Immunity protein Imm6 Bromodomain PF00439.25 gi|126466121|ref|YP_001041230.1| - 0.091 12.8 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Bromodomain Sigma70_r4 PF04545.16 gi|126466121|ref|YP_001041230.1| - 0.13 11.8 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2757 PF10955.8 gi|126466122|ref|YP_001041231.1| - 0.011 16.0 0.5 0.1 12.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) TF_Zn_Ribbon PF08271.12 gi|126466122|ref|YP_001041231.1| - 0.016 14.7 1.0 0.69 9.5 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|126466122|ref|YP_001041231.1| - 0.018 14.6 0.5 5.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|126466122|ref|YP_001041231.1| - 0.018 14.8 3.7 0.85 9.4 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|126466122|ref|YP_001041231.1| - 0.053 13.5 0.6 6.2 6.9 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|126466122|ref|YP_001041231.1| - 0.061 13.4 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|126466122|ref|YP_001041231.1| - 0.063 12.7 3.9 1.9 8.0 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|126466122|ref|YP_001041231.1| - 0.064 13.2 1.1 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|126466122|ref|YP_001041231.1| - 0.13 12.0 0.9 2.4 7.9 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RRN7 PF11781.8 gi|126466122|ref|YP_001041231.1| - 0.23 11.2 0.5 0.23 11.2 0.5 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TFIIS_C PF01096.18 gi|126466122|ref|YP_001041231.1| - 0.25 11.2 1.6 7.9 6.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) tRNA_NucTransf2 PF09249.11 gi|126466123|ref|YP_001041232.1| - 7.2e-41 139.0 0.0 1.3e-40 138.1 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|126466123|ref|YP_001041232.1| - 1.2e-11 44.8 0.3 7.3e-11 42.2 0.1 2.5 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|126466123|ref|YP_001041232.1| - 2.3e-07 31.2 0.0 5.4e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain AID PF18767.1 gi|126466123|ref|YP_001041232.1| - 0.04 13.9 0.0 0.13 12.3 0.0 1.9 1 0 0 1 1 1 0 Activation induced deaminase Tfb5 PF06331.12 gi|126466123|ref|YP_001041232.1| - 0.4 10.7 2.1 10 6.2 0.1 3.0 3 0 0 3 3 3 0 Transcription factor TFIIH complex subunit Tfb5 PBC PF03792.13 gi|126466123|ref|YP_001041232.1| - 0.5 10.1 1.9 6.4 6.5 0.3 2.6 3 1 0 3 3 3 0 PBC domain LigT_PEase PF02834.16 gi|126466124|ref|YP_001041233.1| - 2.1e-34 117.6 0.0 5.4e-19 68.2 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|126466124|ref|YP_001041233.1| - 1.4e-13 51.1 0.0 1.7e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|126466124|ref|YP_001041233.1| - 2.2e-13 50.6 0.0 2.3e-12 47.2 0.0 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|126466124|ref|YP_001041233.1| - 5.6e-06 26.0 0.0 8.8e-06 25.4 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised conserved protein Corona_NS2A PF05213.12 gi|126466124|ref|YP_001041233.1| - 0.00031 20.2 0.0 0.00031 20.2 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NS2A protein AAA_17 PF13207.6 gi|126466125|ref|YP_001041234.1| - 1.4e-17 64.4 0.0 2.1e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126466125|ref|YP_001041234.1| - 1.7e-12 48.0 0.0 2.6e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|126466125|ref|YP_001041234.1| - 1.1e-07 32.1 0.0 2.3e-07 31.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain CoaE PF01121.20 gi|126466125|ref|YP_001041234.1| - 7e-05 22.6 0.2 0.025 14.2 0.0 2.2 1 1 0 2 2 2 2 Dephospho-CoA kinase Zeta_toxin PF06414.12 gi|126466125|ref|YP_001041234.1| - 0.00065 19.0 0.0 0.001 18.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|126466125|ref|YP_001041234.1| - 0.024 15.0 0.0 0.059 13.8 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_2 PF03668.15 gi|126466125|ref|YP_001041234.1| - 0.089 12.1 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop ATPase protein family Sulfotransfer_4 PF17784.1 gi|126466125|ref|YP_001041234.1| - 0.099 12.4 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 Sulfotransferase domain NB-ARC PF00931.22 gi|126466125|ref|YP_001041234.1| - 0.12 11.6 0.3 0.29 10.3 0.3 1.8 1 1 0 1 1 1 0 NB-ARC domain BTB_3 PF16017.5 gi|126466125|ref|YP_001041234.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 BTB/POZ domain RNA_binding PF01877.17 gi|126466126|ref|YP_001041235.1| - 5.4e-17 62.2 0.1 7.1e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 RNA binding TssD PF17642.1 gi|126466126|ref|YP_001041235.1| - 0.0092 15.8 0.0 0.14 12.0 0.0 2.5 2 1 1 3 3 3 2 Hemolysin coregulated protein Hcp (TssD) OGFr_N PF04664.13 gi|126466126|ref|YP_001041235.1| - 0.17 11.4 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Opioid growth factor receptor (OGFr) conserved region Lactamase_B_2 PF12706.7 gi|126466127|ref|YP_001041236.1| - 2.1e-21 76.4 0.0 2.7e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|126466127|ref|YP_001041236.1| - 5.3e-13 48.4 0.0 1.1e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B PF00753.27 gi|126466127|ref|YP_001041236.1| - 3.4e-08 33.7 0.0 1e-07 32.2 0.0 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily UPF0020 PF01170.18 gi|126466128|ref|YP_001041237.1| - 2.6e-23 82.7 0.0 1.3e-22 80.5 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|126466128|ref|YP_001041237.1| - 1.1e-09 38.4 0.0 6.4e-08 32.6 0.0 2.3 2 0 0 2 2 2 1 DNA methylase Methyltransf_31 PF13847.6 gi|126466128|ref|YP_001041237.1| - 3.4e-05 23.7 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126466128|ref|YP_001041237.1| - 4.3e-05 23.2 0.0 8.3e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|126466128|ref|YP_001041237.1| - 0.0012 18.2 0.0 0.0023 17.3 0.0 1.5 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|126466128|ref|YP_001041237.1| - 0.033 13.8 0.0 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MethyltransfD12 PF02086.15 gi|126466128|ref|YP_001041237.1| - 0.067 12.9 0.0 0.9 9.2 0.0 2.3 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Pribosyltran_N PF13793.6 gi|126466129|ref|YP_001041238.1| - 1.1e-29 102.8 0.1 1.8e-28 98.8 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|126466129|ref|YP_001041238.1| - 1.6e-15 57.0 0.7 2e-14 53.4 0.4 2.3 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|126466129|ref|YP_001041238.1| - 3e-12 47.0 0.5 3e-12 47.0 0.5 2.4 2 1 0 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|126466129|ref|YP_001041238.1| - 9.7e-05 21.9 0.0 0.00021 20.8 0.0 1.6 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|126466129|ref|YP_001041238.1| - 0.0005 19.6 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase Radical_SAM PF04055.21 gi|126466130|ref|YP_001041239.1| - 1.6e-20 74.1 0.0 4.4e-20 72.7 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|126466130|ref|YP_001041239.1| - 0.00086 19.6 0.1 0.0018 18.6 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|126466130|ref|YP_001041239.1| - 0.022 14.2 1.1 0.34 10.4 0.1 2.7 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|126466130|ref|YP_001041239.1| - 0.032 14.1 0.0 0.1 12.5 0.0 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DpnI PF06044.12 gi|126466130|ref|YP_001041239.1| - 0.046 13.4 3.3 0.16 11.6 0.1 2.6 2 1 0 2 2 2 0 Dam-replacing family TF_Zn_Ribbon PF08271.12 gi|126466130|ref|YP_001041239.1| - 0.11 12.0 0.0 0.11 12.0 0.0 3.2 4 0 0 4 4 4 0 TFIIB zinc-binding Fer4_14 PF13394.6 gi|126466130|ref|YP_001041239.1| - 0.13 12.4 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain DZR PF12773.7 gi|126466130|ref|YP_001041239.1| - 0.14 12.2 0.0 0.14 12.2 0.0 2.8 2 1 0 2 2 1 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|126466130|ref|YP_001041239.1| - 0.72 9.6 0.0 0.72 9.6 0.0 4.3 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|126466130|ref|YP_001041239.1| - 1.4 9.1 8.6 2.3 8.4 0.0 3.5 4 0 0 4 4 4 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|126466130|ref|YP_001041239.1| - 8 6.3 12.3 1.1 9.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain ATP_bind_1 PF03029.17 gi|126466131|ref|YP_001041240.1| - 4.5e-58 196.9 0.0 5.2e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|126466131|ref|YP_001041240.1| - 4.7e-05 23.9 0.0 0.00013 22.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|126466131|ref|YP_001041240.1| - 0.00012 21.9 0.0 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_28 PF13521.6 gi|126466131|ref|YP_001041240.1| - 0.00021 21.6 0.0 0.00083 19.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|126466131|ref|YP_001041240.1| - 0.00028 20.6 0.0 0.0015 18.2 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|126466131|ref|YP_001041240.1| - 0.00067 19.7 0.0 0.00089 19.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|126466131|ref|YP_001041240.1| - 0.0016 17.5 0.0 0.0029 16.7 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 gi|126466131|ref|YP_001041240.1| - 0.0021 17.8 0.4 0.08 12.7 0.0 2.8 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|126466131|ref|YP_001041240.1| - 0.0036 17.1 0.0 0.0052 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|126466131|ref|YP_001041240.1| - 0.0037 16.5 0.0 0.0071 15.6 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase KTI12 PF08433.10 gi|126466131|ref|YP_001041240.1| - 0.0041 16.6 0.1 0.021 14.3 0.0 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 NACHT PF05729.12 gi|126466131|ref|YP_001041240.1| - 0.0041 17.0 0.1 0.0066 16.4 0.0 1.5 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|126466131|ref|YP_001041240.1| - 0.0042 17.5 0.0 0.0052 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|126466131|ref|YP_001041240.1| - 0.0083 15.2 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF87 PF01935.17 gi|126466131|ref|YP_001041240.1| - 0.0099 16.0 0.0 0.024 14.7 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|126466131|ref|YP_001041240.1| - 0.013 14.8 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin APS_kinase PF01583.20 gi|126466131|ref|YP_001041240.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase GTP_EFTU PF00009.27 gi|126466131|ref|YP_001041240.1| - 0.018 14.6 0.4 0.68 9.4 0.4 2.7 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain IstB_IS21 PF01695.17 gi|126466131|ref|YP_001041240.1| - 0.024 14.4 0.0 0.049 13.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.16 gi|126466131|ref|YP_001041240.1| - 0.039 13.4 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein MobB PF03205.14 gi|126466131|ref|YP_001041240.1| - 0.048 13.6 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.6 gi|126466131|ref|YP_001041240.1| - 0.065 13.2 0.7 1.3 8.9 0.1 2.6 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|126466131|ref|YP_001041240.1| - 0.067 12.9 0.0 0.09 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|126466131|ref|YP_001041240.1| - 0.077 13.1 0.1 0.35 11.0 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|126466131|ref|YP_001041240.1| - 0.08 12.9 0.0 5.9 6.8 0.0 2.9 3 0 0 3 3 3 0 RsgA GTPase AAA_22 PF13401.6 gi|126466131|ref|YP_001041240.1| - 0.085 13.1 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|126466131|ref|YP_001041240.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein STAR_dimer PF16544.5 gi|126466131|ref|YP_001041240.1| - 0.11 12.1 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Homodimerisation region of STAR domain protein Viral_helicase1 PF01443.18 gi|126466131|ref|YP_001041240.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase WD40_alt PF14077.6 gi|126466131|ref|YP_001041240.1| - 0.16 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Alternative WD40 repeat motif ABC_tran PF00005.27 gi|126466131|ref|YP_001041240.1| - 0.16 12.5 0.0 0.43 11.1 0.0 1.7 2 0 0 2 2 1 0 ABC transporter MipZ PF09140.11 gi|126466131|ref|YP_001041240.1| - 0.19 11.0 0.0 0.54 9.5 0.0 1.7 1 1 0 1 1 1 0 ATPase MipZ Succ_CoA_lig PF13607.6 gi|126466132|ref|YP_001041241.1| - 1.5e-49 167.4 0.1 3.8e-48 162.8 0.0 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|126466132|ref|YP_001041241.1| - 2.1e-29 102.4 0.1 2.5e-28 98.9 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|126466132|ref|YP_001041241.1| - 1e-14 54.9 0.6 4.1e-14 53.0 0.6 2.0 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|126466132|ref|YP_001041241.1| - 0.049 13.6 0.1 0.47 10.4 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|126466132|ref|YP_001041241.1| - 0.084 13.5 0.1 8.2 7.1 0.0 3.0 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF218 PF02698.17 gi|126466132|ref|YP_001041241.1| - 0.1 12.6 0.2 4.5 7.3 0.0 2.9 3 0 0 3 3 3 0 DUF218 domain GFO_IDH_MocA PF01408.22 gi|126466132|ref|YP_001041241.1| - 0.15 12.9 0.1 4.1 8.3 0.0 2.9 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_5 PF13549.6 gi|126466133|ref|YP_001041242.1| - 2.6e-85 285.4 0.2 2.9e-85 285.2 0.2 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|126466133|ref|YP_001041242.1| - 2.7e-06 27.1 0.5 3.7e-06 26.7 0.5 1.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|126466133|ref|YP_001041242.1| - 0.008 15.7 0.1 0.01 15.4 0.1 1.4 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain LPP PF04728.13 gi|126466134|ref|YP_001041243.1| - 2.2e-06 28.0 19.4 0.26 11.7 0.2 5.0 3 2 2 5 5 4 3 Lipoprotein leucine-zipper Laminin_II PF06009.12 gi|126466134|ref|YP_001041243.1| - 8.4e-06 25.9 15.7 8.4e-06 25.9 15.7 4.0 1 1 3 4 4 3 2 Laminin Domain II ADIP PF11559.8 gi|126466134|ref|YP_001041243.1| - 1.5e-05 25.1 25.5 1.5e-05 25.1 25.5 3.8 1 1 1 3 3 3 1 Afadin- and alpha -actinin-Binding MbeD_MobD PF04899.12 gi|126466134|ref|YP_001041243.1| - 1.8e-05 24.7 6.4 0.18 11.9 1.1 4.2 2 1 1 3 3 2 2 MbeD/MobD like AAA_13 PF13166.6 gi|126466134|ref|YP_001041243.1| - 2.3e-05 23.3 29.4 2.3e-05 23.3 29.4 2.6 1 1 2 3 3 3 1 AAA domain Fez1 PF06818.15 gi|126466134|ref|YP_001041243.1| - 4.9e-05 23.9 47.9 0.026 15.0 20.6 2.1 1 1 1 2 2 2 2 Fez1 DUF948 PF06103.11 gi|126466134|ref|YP_001041243.1| - 5.2e-05 23.4 18.1 0.00049 20.3 2.9 4.7 1 1 3 4 4 4 2 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|126466134|ref|YP_001041243.1| - 6.6e-05 21.9 52.6 0.061 12.2 30.6 2.9 1 1 2 3 3 3 2 Spc7 kinetochore protein APG6_N PF17675.1 gi|126466134|ref|YP_001041243.1| - 0.00011 22.7 51.8 0.00047 20.7 20.8 3.8 1 1 1 3 3 3 2 Apg6 coiled-coil region HsbA PF12296.8 gi|126466134|ref|YP_001041243.1| - 0.00015 22.2 6.7 0.017 15.5 1.0 4.0 2 2 1 3 3 2 1 Hydrophobic surface binding protein A Syntaxin_2 PF14523.6 gi|126466134|ref|YP_001041243.1| - 0.00015 22.1 15.0 0.00015 22.1 15.0 3.7 1 1 2 3 3 2 1 Syntaxin-like protein ZapB PF06005.12 gi|126466134|ref|YP_001041243.1| - 0.00017 22.0 14.7 0.00017 22.0 14.7 5.5 1 1 3 4 4 3 1 Cell division protein ZapB ATG16 PF08614.11 gi|126466134|ref|YP_001041243.1| - 0.00029 21.1 40.8 0.14 12.4 21.5 2.7 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) NPV_P10 PF05531.12 gi|126466134|ref|YP_001041243.1| - 0.00036 20.9 6.0 0.00036 20.9 6.0 4.6 2 2 2 4 4 3 1 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.8 gi|126466134|ref|YP_001041243.1| - 0.0013 16.3 41.6 0.0017 16.0 41.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Cnn_1N PF07989.11 gi|126466134|ref|YP_001041243.1| - 0.0014 18.7 8.8 0.0014 18.7 8.8 5.5 1 1 4 5 5 3 1 Centrosomin N-terminal motif 1 Filament PF00038.21 gi|126466134|ref|YP_001041243.1| - 0.0018 17.9 44.2 0.084 12.4 44.2 3.0 1 1 0 1 1 1 1 Intermediate filament protein FlxA PF14282.6 gi|126466134|ref|YP_001041243.1| - 0.0021 18.0 11.8 0.0021 18.0 11.8 5.4 2 1 3 5 5 4 2 FlxA-like protein DUF1664 PF07889.12 gi|126466134|ref|YP_001041243.1| - 0.0027 17.7 36.4 0.049 13.7 6.4 4.5 1 1 3 4 4 4 2 Protein of unknown function (DUF1664) COG2 PF06148.11 gi|126466134|ref|YP_001041243.1| - 0.0031 17.6 3.5 0.0031 17.6 3.5 5.1 1 1 4 5 5 5 1 COG (conserved oligomeric Golgi) complex component, COG2 Sec34 PF04136.15 gi|126466134|ref|YP_001041243.1| - 0.0035 17.2 32.4 0.005 16.7 6.0 4.4 1 1 2 4 4 4 2 Sec34-like family Seryl_tRNA_N PF02403.22 gi|126466134|ref|YP_001041243.1| - 0.0037 17.5 13.3 0.0037 17.5 13.3 4.2 2 1 3 5 5 5 3 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.11 gi|126466134|ref|YP_001041243.1| - 0.0044 17.4 7.9 0.0044 17.4 7.9 6.6 2 1 2 5 5 5 2 Flagella accessory protein C (FlaC) eIF3_N PF09440.10 gi|126466134|ref|YP_001041243.1| - 0.0052 17.2 8.7 0.0052 17.2 8.7 3.8 1 1 1 3 3 3 1 eIF3 subunit 6 N terminal domain EzrA PF06160.12 gi|126466134|ref|YP_001041243.1| - 0.0053 15.0 51.1 0.0097 14.1 31.4 2.6 1 1 0 2 2 2 1 Septation ring formation regulator, EzrA TMF_DNA_bd PF12329.8 gi|126466134|ref|YP_001041243.1| - 0.0053 16.7 12.8 0.0053 16.7 12.8 6.6 2 2 5 7 7 6 1 TATA element modulatory factor 1 DNA binding DUF2730 PF10805.8 gi|126466134|ref|YP_001041243.1| - 0.0055 16.8 6.2 0.0055 16.8 6.2 4.8 1 1 5 6 6 6 1 Protein of unknown function (DUF2730) KASH_CCD PF14662.6 gi|126466134|ref|YP_001041243.1| - 0.0067 16.3 38.4 0.0067 16.3 38.4 3.6 1 1 2 3 3 3 2 Coiled-coil region of CCDC155 or KASH XhlA PF10779.9 gi|126466134|ref|YP_001041243.1| - 0.0077 16.4 8.4 0.0077 16.4 8.4 5.7 1 1 4 7 7 5 1 Haemolysin XhlA Snapin_Pallidin PF14712.6 gi|126466134|ref|YP_001041243.1| - 0.012 16.0 13.7 0.012 16.0 13.7 5.1 3 1 2 5 5 5 0 Snapin/Pallidin FliJ PF02050.16 gi|126466134|ref|YP_001041243.1| - 0.012 15.8 12.3 0.012 15.8 12.3 4.5 1 1 2 4 4 4 0 Flagellar FliJ protein DUF4763 PF15960.5 gi|126466134|ref|YP_001041243.1| - 0.015 14.7 37.0 0.083 12.2 7.4 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) ABC_tran_CTD PF16326.5 gi|126466134|ref|YP_001041243.1| - 0.016 15.5 8.3 0.016 15.5 8.3 5.8 1 1 4 5 5 3 0 ABC transporter C-terminal domain Baculo_PEP_C PF04513.12 gi|126466134|ref|YP_001041243.1| - 0.016 15.2 23.1 0.047 13.7 16.7 3.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus phiKZ_IP PF12699.7 gi|126466134|ref|YP_001041243.1| - 0.017 14.3 3.3 0.017 14.3 3.3 5.3 2 2 3 5 5 5 0 phiKZ-like phage internal head proteins SlyX PF04102.12 gi|126466134|ref|YP_001041243.1| - 0.02 15.5 8.3 0.02 15.5 8.3 6.1 2 2 5 7 7 6 0 SlyX ALIX_LYPXL_bnd PF13949.6 gi|126466134|ref|YP_001041243.1| - 0.024 13.9 40.0 0.033 13.5 16.9 3.0 1 1 2 3 3 3 0 ALIX V-shaped domain binding to HIV Mod_r PF07200.13 gi|126466134|ref|YP_001041243.1| - 0.025 14.7 48.5 0.05 13.7 15.1 4.1 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF4201 PF13870.6 gi|126466134|ref|YP_001041243.1| - 0.026 14.3 61.3 1.2 8.9 14.8 4.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) JIP_LZII PF16471.5 gi|126466134|ref|YP_001041243.1| - 0.031 14.4 2.2 0.031 14.4 2.2 5.2 2 1 4 6 6 3 0 JNK-interacting protein leucine zipper II HrpB7 PF09486.10 gi|126466134|ref|YP_001041243.1| - 0.035 14.5 15.9 0.029 14.8 7.7 3.0 2 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DASH_Hsk3 PF08227.11 gi|126466134|ref|YP_001041243.1| - 0.04 14.3 1.8 3 8.3 0.6 3.8 2 1 1 3 3 3 0 DASH complex subunit Hsk3 like BAR_3 PF16746.5 gi|126466134|ref|YP_001041243.1| - 0.063 13.0 38.6 0.54 9.9 16.0 2.4 1 1 1 2 2 2 0 BAR domain of APPL family Mce4_CUP1 PF11887.8 gi|126466134|ref|YP_001041243.1| - 0.071 12.6 0.6 0.34 10.3 0.2 2.1 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative IFT57 PF10498.9 gi|126466134|ref|YP_001041243.1| - 0.1 11.6 47.4 0.034 13.1 28.7 3.2 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 APG17 PF04108.12 gi|126466134|ref|YP_001041243.1| - 0.14 11.2 33.1 0.011 14.9 15.9 2.7 1 1 0 2 2 2 0 Autophagy protein Apg17 Atg14 PF10186.9 gi|126466134|ref|YP_001041243.1| - 0.14 11.2 55.3 0.031 13.4 30.7 3.0 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 HOOK PF05622.12 gi|126466134|ref|YP_001041243.1| - 0.14 10.2 56.5 0.059 11.5 32.7 2.2 1 1 1 2 2 1 0 HOOK protein SHE3 PF17078.5 gi|126466134|ref|YP_001041243.1| - 0.16 11.7 45.4 2 8.1 14.7 2.9 1 1 0 2 2 2 0 SWI5-dependent HO expression protein 3 MAP65_ASE1 PF03999.12 gi|126466134|ref|YP_001041243.1| - 0.18 10.5 53.2 2.9 6.5 51.2 2.2 1 1 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) BRE1 PF08647.11 gi|126466134|ref|YP_001041243.1| - 0.19 11.8 54.8 0.059 13.4 15.2 4.5 3 2 1 4 4 4 0 BRE1 E3 ubiquitin ligase Bacillus_HBL PF05791.11 gi|126466134|ref|YP_001041243.1| - 0.21 11.4 33.9 0.11 12.3 2.2 4.1 1 1 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) WXG100 PF06013.12 gi|126466134|ref|YP_001041243.1| - 0.28 11.4 9.8 0.57 10.5 1.9 4.7 3 2 0 3 3 2 0 Proteins of 100 residues with WXG ApoO PF09769.9 gi|126466134|ref|YP_001041243.1| - 0.29 11.1 9.0 0.23 11.4 1.3 3.1 2 2 0 2 2 2 0 Apolipoprotein O DUF4407 PF14362.6 gi|126466134|ref|YP_001041243.1| - 0.31 10.4 24.0 4.8 6.5 13.6 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) CSN4_RPN5_eIF3a PF18420.1 gi|126466134|ref|YP_001041243.1| - 0.33 11.1 12.9 0.72 10.1 0.3 4.5 2 1 2 4 4 3 0 CSN4/RPN5/eIF3a helix turn helix domain PI3K_P85_iSH2 PF16454.5 gi|126466134|ref|YP_001041243.1| - 0.48 10.0 49.1 1.1 8.9 16.2 3.6 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Laminin_I PF06008.14 gi|126466134|ref|YP_001041243.1| - 0.5 10.0 42.2 1.6 8.4 26.5 3.3 1 1 2 3 3 2 0 Laminin Domain I DUF3540 PF12059.8 gi|126466134|ref|YP_001041243.1| - 0.51 10.1 5.5 0.74 9.6 0.8 2.7 2 1 2 4 4 3 0 Protein of unknown function (DUF3540) DUF4140 PF13600.6 gi|126466134|ref|YP_001041243.1| - 0.53 10.8 34.1 0.17 12.3 4.7 6.4 2 1 3 5 5 5 0 N-terminal domain of unknown function (DUF4140) MAD PF05557.13 gi|126466134|ref|YP_001041243.1| - 0.59 8.4 55.0 1.2 7.4 31.1 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein HAUS-augmin3 PF14932.6 gi|126466134|ref|YP_001041243.1| - 0.62 9.6 35.5 0.61 9.6 7.0 2.8 1 1 0 2 2 2 0 HAUS augmin-like complex subunit 3 FUSC PF04632.12 gi|126466134|ref|YP_001041243.1| - 0.67 8.4 3.0 1.7 7.1 0.1 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family PspA_IM30 PF04012.12 gi|126466134|ref|YP_001041243.1| - 0.92 9.0 39.1 2.6 7.6 10.6 3.5 1 1 2 3 3 3 0 PspA/IM30 family SKA1 PF07160.12 gi|126466134|ref|YP_001041243.1| - 1 9.2 40.5 0.16 11.8 15.1 3.6 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 COG5 PF10392.9 gi|126466134|ref|YP_001041243.1| - 1 9.5 34.2 0.25 11.5 2.8 4.4 1 1 3 4 4 3 0 Golgi transport complex subunit 5 DASH_Dam1 PF08653.10 gi|126466134|ref|YP_001041243.1| - 1.2 9.0 12.2 11 5.9 4.3 5.0 3 2 0 3 3 3 0 DASH complex subunit Dam1 PilJ PF13675.6 gi|126466134|ref|YP_001041243.1| - 1.2 9.2 9.5 2.7 8.0 1.0 3.6 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF5082 PF16888.5 gi|126466134|ref|YP_001041243.1| - 1.3 9.3 50.2 0.05 13.9 19.6 3.9 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) BLOC1_2 PF10046.9 gi|126466134|ref|YP_001041243.1| - 1.4 9.3 39.4 0.52 10.6 8.0 4.8 1 1 3 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlgN PF05130.12 gi|126466134|ref|YP_001041243.1| - 1.4 9.4 45.0 13 6.3 9.4 3.7 1 1 2 3 3 3 0 FlgN protein DUF16 PF01519.16 gi|126466134|ref|YP_001041243.1| - 1.4 9.4 47.8 0.092 13.2 8.9 4.6 1 1 2 3 3 2 0 Protein of unknown function DUF16 TMPIT PF07851.13 gi|126466134|ref|YP_001041243.1| - 1.5 8.0 39.7 0.057 12.7 14.3 3.3 1 1 3 4 4 3 0 TMPIT-like protein HalX PF08663.10 gi|126466134|ref|YP_001041243.1| - 1.5 9.2 18.5 2.3 8.6 0.8 5.4 2 2 3 5 5 5 0 HalX domain Phage_GPO PF05929.11 gi|126466134|ref|YP_001041243.1| - 1.6 8.3 18.6 0.49 10.0 11.0 2.7 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase GAS PF13851.6 gi|126466134|ref|YP_001041243.1| - 1.7 7.9 61.1 0.45 9.8 14.8 3.9 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding SKA2 PF16740.5 gi|126466134|ref|YP_001041243.1| - 1.9 8.3 34.6 1.9 8.3 10.0 4.6 1 1 4 5 5 5 0 Spindle and kinetochore-associated protein 2 YtxH PF12732.7 gi|126466134|ref|YP_001041243.1| - 2 9.0 24.2 1.3 9.6 1.7 4.4 3 1 1 4 4 3 0 YtxH-like protein EspB PF05802.11 gi|126466134|ref|YP_001041243.1| - 2.1 8.3 10.7 4.3 7.3 3.7 3.2 2 1 0 2 2 2 0 Enterobacterial EspB protein CENP-F_leu_zip PF10473.9 gi|126466134|ref|YP_001041243.1| - 2.4 8.2 60.0 11 6.0 13.9 3.9 1 1 3 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF745 PF05335.13 gi|126466134|ref|YP_001041243.1| - 2.5 7.8 19.7 0.062 13.0 5.8 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF745) Retrotrans_gag PF03732.17 gi|126466134|ref|YP_001041243.1| - 2.5 8.4 11.5 4.6 7.6 0.6 3.7 2 1 0 2 2 2 0 Retrotransposon gag protein UPF0242 PF06785.11 gi|126466134|ref|YP_001041243.1| - 3 7.9 58.7 0.031 14.4 21.7 3.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus SOGA PF11365.8 gi|126466134|ref|YP_001041243.1| - 3.2 8.9 48.2 1.2 10.3 1.5 5.1 1 1 3 4 4 4 0 Protein SOGA Orthopox_A5L PF06193.11 gi|126466134|ref|YP_001041243.1| - 3.3 7.1 7.1 1.6 8.1 0.4 2.6 2 1 0 2 2 2 0 Orthopoxvirus A5L protein-like YkyA PF10368.9 gi|126466134|ref|YP_001041243.1| - 3.4 7.3 52.2 6.6 6.4 16.5 3.7 2 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Spectrin PF00435.21 gi|126466134|ref|YP_001041243.1| - 3.5 8.2 42.0 0.042 14.3 12.7 4.2 2 2 2 4 4 4 0 Spectrin repeat TMF_TATA_bd PF12325.8 gi|126466134|ref|YP_001041243.1| - 4.6 7.5 55.6 1.3 9.3 20.5 3.9 1 1 1 3 3 3 0 TATA element modulatory factor 1 TATA binding Syntaxin-6_N PF09177.11 gi|126466134|ref|YP_001041243.1| - 4.6 7.9 34.2 1.9 9.1 15.8 4.2 2 2 1 3 3 3 0 Syntaxin 6, N-terminal DUF3450 PF11932.8 gi|126466134|ref|YP_001041243.1| - 4.7 6.5 41.2 9.7 5.4 22.3 4.0 1 1 2 3 3 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|126466134|ref|YP_001041243.1| - 5.3 7.1 46.1 0.37 10.9 18.7 4.4 1 1 2 3 3 2 0 TPR/MLP1/MLP2-like protein YscO PF07321.12 gi|126466134|ref|YP_001041243.1| - 5.7 6.9 42.0 0.53 10.2 11.7 3.6 1 1 3 4 4 4 0 Type III secretion protein YscO DUF2400 PF09674.10 gi|126466134|ref|YP_001041243.1| - 5.9 6.8 16.7 11 6.0 7.9 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2400) MCPsignal PF00015.21 gi|126466134|ref|YP_001041243.1| - 6.7 6.5 20.4 0.18 11.6 7.2 3.3 2 1 2 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain YjcZ PF13990.6 gi|126466134|ref|YP_001041243.1| - 6.8 6.0 10.4 0.8 9.0 4.7 2.2 1 1 2 3 3 3 0 YjcZ-like protein Ssu72 PF04722.13 gi|126466134|ref|YP_001041243.1| - 7 6.2 13.2 0.67 9.5 8.3 1.8 2 0 0 2 2 1 0 Ssu72-like protein YabA PF06156.13 gi|126466134|ref|YP_001041243.1| - 7.8 7.2 49.5 0.97 10.1 5.0 5.0 1 1 2 3 3 2 0 Initiation control protein YabA T3SSipB PF16535.5 gi|126466134|ref|YP_001041243.1| - 8.6 6.8 13.9 3.3 8.2 1.4 3.0 1 1 2 3 3 3 0 Type III cell invasion protein SipB CENP-H PF05837.12 gi|126466134|ref|YP_001041243.1| - 9 6.8 49.1 0.45 11.0 9.6 4.2 1 1 2 3 3 3 0 Centromere protein H (CENP-H) Prominin PF05478.11 gi|126466134|ref|YP_001041243.1| - 9.8 4.0 31.0 64 1.3 29.0 2.2 1 1 0 1 1 1 0 Prominin DUF373 PF04123.13 gi|126466135|ref|YP_001041244.1| - 1.5e-76 258.0 20.8 1.9e-76 257.7 20.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Prenyltransf PF01255.19 gi|126466136|ref|YP_001041245.1| - 2.9e-76 255.9 0.0 3.4e-76 255.7 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase MAAL_N PF05034.13 gi|126466136|ref|YP_001041245.1| - 0.19 11.3 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus NTPase_I-T PF01931.18 gi|126466137|ref|YP_001041246.1| - 4.3e-38 130.7 0.0 4.9e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Ribosomal_S8e PF01201.22 gi|126466138|ref|YP_001041247.1| - 3.2e-36 124.5 1.2 4e-36 124.2 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|126466139|ref|YP_001041248.1| - 3.2e-21 76.1 0.2 4e-21 75.8 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.14 gi|126466140|ref|YP_001041249.1| - 1.8e-07 31.1 0.0 1.9e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Adeno_E4 PF05385.11 gi|126466140|ref|YP_001041249.1| - 0.021 14.9 0.2 0.027 14.5 0.2 1.2 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein Ada3 PF10198.9 gi|126466140|ref|YP_001041249.1| - 0.094 12.9 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 TFIIB PF00382.19 gi|126466141|ref|YP_001041250.1| - 8.4e-20 70.6 0.1 2.4e-14 53.1 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|126466141|ref|YP_001041250.1| - 2.6e-17 62.0 0.8 4.8e-17 61.2 0.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding KORA PF16509.5 gi|126466141|ref|YP_001041250.1| - 0.0017 18.6 0.4 0.53 10.6 0.0 2.6 2 0 0 2 2 2 1 TrfB plasmid transcriptional repressor Cyclin_N PF00134.23 gi|126466141|ref|YP_001041250.1| - 0.002 17.9 0.2 0.027 14.2 0.0 2.2 1 1 0 2 2 2 1 Cyclin, N-terminal domain zinc_ribbon_10 PF10058.9 gi|126466141|ref|YP_001041250.1| - 0.0022 17.7 1.9 0.0042 16.8 1.9 1.5 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 gi|126466141|ref|YP_001041250.1| - 0.0051 16.5 1.3 2.6 7.9 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DUF632 PF04782.12 gi|126466141|ref|YP_001041250.1| - 0.0054 16.1 0.9 0.0077 15.6 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF632) Zn_Tnp_IS1595 PF12760.7 gi|126466141|ref|YP_001041250.1| - 0.0064 16.4 1.1 0.011 15.6 1.1 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|126466141|ref|YP_001041250.1| - 0.0078 15.9 3.9 0.02 14.6 3.9 1.7 1 1 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|126466141|ref|YP_001041250.1| - 0.011 16.1 0.2 0.021 15.2 0.2 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_9 PF13901.6 gi|126466141|ref|YP_001041250.1| - 0.011 15.7 2.0 0.013 15.5 0.8 1.6 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon zf_UBZ PF18439.1 gi|126466141|ref|YP_001041250.1| - 0.018 14.6 0.4 0.34 10.6 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S27e PF01667.17 gi|126466141|ref|YP_001041250.1| - 0.024 14.3 0.7 0.041 13.6 0.7 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|126466141|ref|YP_001041250.1| - 0.032 13.9 1.5 0.067 12.9 1.5 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain Cyclin_C PF02984.19 gi|126466141|ref|YP_001041250.1| - 0.032 14.3 0.1 12 6.0 0.0 2.5 1 1 1 2 2 2 0 Cyclin, C-terminal domain Zn-ribbon_8 PF09723.10 gi|126466141|ref|YP_001041250.1| - 0.037 14.2 1.9 3.2 7.9 0.3 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|126466141|ref|YP_001041250.1| - 0.04 13.3 1.5 1.4 8.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|126466141|ref|YP_001041250.1| - 0.1 12.5 0.4 0.24 11.4 0.4 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|126466141|ref|YP_001041250.1| - 0.12 12.7 1.3 0.35 11.2 1.3 1.8 1 0 0 1 1 1 0 zinc-finger-containing domain DZR PF12773.7 gi|126466141|ref|YP_001041250.1| - 0.21 11.7 0.4 0.37 10.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|126466141|ref|YP_001041250.1| - 1.4 9.1 3.9 26 5.0 0.1 2.7 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain RNA_pol_Rpc34 PF05158.12 gi|126466142|ref|YP_001041251.1| - 8.2e-06 25.4 0.3 0.0025 17.2 0.0 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit HTH_24 PF13412.6 gi|126466142|ref|YP_001041251.1| - 4.5e-05 22.9 0.0 9.1e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126466142|ref|YP_001041251.1| - 0.00012 22.0 0.0 0.0002 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|126466142|ref|YP_001041251.1| - 0.00046 20.0 0.0 0.00077 19.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|126466142|ref|YP_001041251.1| - 0.00064 19.8 0.0 0.00093 19.3 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|126466142|ref|YP_001041251.1| - 0.0017 18.2 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|126466142|ref|YP_001041251.1| - 0.0022 17.9 0.1 0.0034 17.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|126466142|ref|YP_001041251.1| - 0.013 16.0 0.0 0.025 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|126466142|ref|YP_001041251.1| - 0.042 13.9 0.0 0.099 12.7 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|126466142|ref|YP_001041251.1| - 0.045 13.7 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|126466142|ref|YP_001041251.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TRM PF02005.16 gi|126466143|ref|YP_001041252.1| - 1.8e-76 257.8 0.0 2e-76 257.7 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|126466143|ref|YP_001041252.1| - 0.0031 17.3 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein NTPase_1 PF03266.15 gi|126466144|ref|YP_001041253.1| - 7.8e-54 182.1 0.2 9.5e-54 181.8 0.2 1.0 1 0 0 1 1 1 1 NTPase AAA PF00004.29 gi|126466144|ref|YP_001041253.1| - 2.7e-06 27.8 0.0 3.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|126466144|ref|YP_001041253.1| - 3.9e-05 23.7 0.2 7.3e-05 22.8 0.2 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|126466144|ref|YP_001041253.1| - 0.00027 21.2 0.1 0.001 19.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|126466144|ref|YP_001041253.1| - 0.0012 18.9 0.1 0.0038 17.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|126466144|ref|YP_001041253.1| - 0.002 17.1 0.1 0.0036 16.3 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|126466144|ref|YP_001041253.1| - 0.0032 17.4 0.2 0.012 15.5 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|126466144|ref|YP_001041253.1| - 0.004 17.6 0.0 0.0073 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|126466144|ref|YP_001041253.1| - 0.0056 17.2 0.6 0.0078 16.7 0.5 1.4 1 1 0 1 1 1 1 ABC transporter ATPase_2 PF01637.18 gi|126466144|ref|YP_001041253.1| - 0.0059 16.5 1.0 0.01 15.8 0.3 1.8 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|126466144|ref|YP_001041253.1| - 0.0062 16.3 0.0 0.017 14.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|126466144|ref|YP_001041253.1| - 0.0072 16.2 0.0 0.016 15.1 0.0 1.6 2 0 0 2 2 1 1 NACHT domain DUF2478 PF10649.9 gi|126466144|ref|YP_001041253.1| - 0.015 14.9 0.0 0.034 13.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2478) RNA_helicase PF00910.22 gi|126466144|ref|YP_001041253.1| - 0.016 15.6 0.0 0.024 15.0 0.0 1.6 1 1 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|126466144|ref|YP_001041253.1| - 0.03 14.2 0.1 0.069 13.1 0.1 1.7 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|126466144|ref|YP_001041253.1| - 0.032 13.4 0.0 0.067 12.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|126466144|ref|YP_001041253.1| - 0.036 14.6 0.1 0.068 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|126466144|ref|YP_001041253.1| - 0.037 13.6 0.4 0.096 12.3 0.2 1.7 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|126466144|ref|YP_001041253.1| - 0.038 13.7 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|126466144|ref|YP_001041253.1| - 0.062 13.6 0.7 0.75 10.1 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|126466144|ref|YP_001041253.1| - 0.081 13.4 0.7 7.5 7.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|126466144|ref|YP_001041253.1| - 0.084 12.9 0.1 2 8.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|126466144|ref|YP_001041253.1| - 0.099 12.4 0.2 6.3 6.5 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|126466144|ref|YP_001041253.1| - 0.12 11.5 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|126466144|ref|YP_001041253.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|126466145|ref|YP_001041254.1| - 3.4e-13 49.4 0.0 2e-12 47.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|126466145|ref|YP_001041254.1| - 6.1e-11 42.2 1.1 5.9e-10 39.0 0.2 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|126466145|ref|YP_001041254.1| - 2.5e-05 24.5 0.0 8.6e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|126466145|ref|YP_001041254.1| - 0.0013 18.6 0.0 0.0045 16.8 0.0 1.9 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_11 PF08279.12 gi|126466145|ref|YP_001041254.1| - 0.0024 17.8 0.1 0.014 15.3 0.0 2.4 2 0 0 2 2 2 1 HTH domain UPF0180 PF03698.13 gi|126466145|ref|YP_001041254.1| - 0.0066 16.6 0.2 0.089 13.0 0.0 2.5 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0180) HTH_26 PF13443.6 gi|126466145|ref|YP_001041254.1| - 0.013 15.9 0.0 0.05 14.0 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain SAD_SRA PF02182.17 gi|126466145|ref|YP_001041254.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 SAD/SRA domain HTH_Crp_2 PF13545.6 gi|126466145|ref|YP_001041254.1| - 0.13 12.3 0.1 1.5 8.8 0.0 2.8 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain TetR_N PF00440.23 gi|126466145|ref|YP_001041254.1| - 0.13 12.1 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Phage_sheath_1N PF17481.2 gi|126466145|ref|YP_001041254.1| - 1.3 9.5 3.4 1.7 9.2 0.3 2.2 2 0 0 2 2 2 0 Phage tail sheath protein beta-sandwich domain Fibrillarin PF01269.17 gi|126466146|ref|YP_001041255.1| - 6.1e-105 349.4 0.0 6.9e-105 349.2 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.10 gi|126466146|ref|YP_001041255.1| - 0.002 17.9 0.0 0.0039 16.9 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|126466146|ref|YP_001041255.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Nop PF01798.18 gi|126466147|ref|YP_001041256.1| - 1e-74 250.9 0.0 1.4e-74 250.4 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HhH-GPD PF00730.25 gi|126466147|ref|YP_001041256.1| - 0.028 14.9 0.0 0.1 13.1 0.0 2.1 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Ribosomal_S30 PF04758.14 gi|126466148|ref|YP_001041257.1| - 2.1e-14 53.4 2.4 2.5e-14 53.2 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Asparaginase PF00710.20 gi|126466149|ref|YP_001041258.1| - 2.8e-59 199.9 0.1 7.8e-59 198.4 0.1 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|126466149|ref|YP_001041258.1| - 1.7e-34 118.5 0.0 9.7e-34 116.0 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|126466149|ref|YP_001041258.1| - 9.9e-22 76.0 0.8 2.1e-21 75.0 0.8 1.6 1 0 0 1 1 1 1 GatD N-terminal domain HMG-CoA_red PF00368.18 gi|126466149|ref|YP_001041258.1| - 0.056 12.5 0.1 0.084 11.9 0.1 1.2 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase PcrB PF01884.17 gi|126466149|ref|YP_001041258.1| - 0.15 11.5 2.4 9.7 5.6 0.1 3.5 4 0 0 4 4 4 0 PcrB family GatB_N PF02934.15 gi|126466150|ref|YP_001041259.1| - 1.1e-75 254.5 0.0 1.6e-75 254.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|126466150|ref|YP_001041259.1| - 4.7e-26 91.4 6.8 4.7e-26 91.4 6.8 1.9 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|126466150|ref|YP_001041259.1| - 8.2e-19 67.7 0.1 3.4e-18 65.7 0.0 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|126466150|ref|YP_001041259.1| - 0.00012 22.2 5.4 0.00044 20.3 5.4 2.0 1 1 0 1 1 1 1 Yqey-like protein DUF1280 PF06918.14 gi|126466151|ref|YP_001041260.1| - 0.0029 17.2 1.3 0.0042 16.7 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1280) Myb_DNA-bind_4 PF13837.6 gi|126466151|ref|YP_001041260.1| - 0.045 14.1 1.0 0.23 11.8 0.5 2.0 1 1 1 2 2 2 0 Myb/SANT-like DNA-binding domain HTH_38 PF13936.6 gi|126466152|ref|YP_001041261.1| - 0.012 15.4 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_37 PF18665.1 gi|126466152|ref|YP_001041261.1| - 0.04 14.5 5.7 0.76 10.4 0.2 2.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Sigma70_r4_2 PF08281.12 gi|126466152|ref|YP_001041261.1| - 0.085 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Metallophos PF00149.28 gi|126466153|ref|YP_001041262.1| - 1e-23 84.9 0.1 1.3e-23 84.6 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126466153|ref|YP_001041262.1| - 0.0013 18.9 0.0 0.0022 18.2 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_m1G_MT PF01746.21 gi|126466153|ref|YP_001041262.1| - 0.018 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase GatB_Yqey PF02637.18 gi|126466155|ref|YP_001041264.1| - 0.06 13.2 0.0 0.089 12.7 0.0 1.2 1 0 0 1 1 1 0 GatB domain 3HCDH_N PF02737.18 gi|126466155|ref|YP_001041264.1| - 0.12 12.2 0.1 0.25 11.2 0.0 1.5 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2150 PF09920.9 gi|126466156|ref|YP_001041265.1| - 0.035 14.1 0.1 1.8 8.5 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) zf-H2C2_2 PF13465.6 gi|126466156|ref|YP_001041265.1| - 0.97 10.0 3.5 6.6 7.3 0.4 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Thioredoxin PF00085.20 gi|126466157|ref|YP_001041266.1| - 0.00013 21.9 0.0 0.00017 21.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Cpn60_TCP1 PF00118.24 gi|126466159|ref|YP_001041268.1| - 6.2e-182 605.6 14.3 7.1e-182 605.4 14.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family GSH-S_ATP PF02955.16 gi|126466159|ref|YP_001041268.1| - 0.035 13.5 1.4 0.53 9.7 0.1 2.7 2 1 1 3 3 3 0 Prokaryotic glutathione synthetase, ATP-grasp domain AAA_5 PF07728.14 gi|126466159|ref|YP_001041268.1| - 0.041 13.9 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_pol_Rpb6 PF01192.22 gi|298205351|ref|YP_003717803.1| - 5.2e-12 45.5 0.0 8.9e-12 44.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 T6SS-SciN PF12790.7 gi|298205351|ref|YP_003717803.1| - 0.13 11.9 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 Peptidase_M50 PF02163.22 gi|126466160|ref|YP_001041269.1| - 9.7e-10 38.1 10.6 1.5e-06 27.7 0.7 2.5 1 1 1 2 2 2 2 Peptidase family M50 Ni_hydr_CYTB PF01292.20 gi|126466160|ref|YP_001041269.1| - 0.043 13.4 11.1 0.03 13.9 3.2 2.5 3 0 0 3 3 3 0 Prokaryotic cytochrome b561 Topoisom_bac PF01131.20 gi|126466161|ref|YP_001041270.1| - 6.3e-113 377.9 0.0 1.1e-112 377.2 0.0 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|126466161|ref|YP_001041270.1| - 5.9e-13 48.9 0.1 6.1e-12 45.7 0.0 2.6 2 0 0 2 2 2 1 Toprim domain Peptidase_S24 PF00717.23 gi|126466162|ref|YP_001041271.1| - 3.4e-07 30.1 0.4 6.3e-07 29.3 0.4 1.5 1 1 0 1 1 1 1 Peptidase S24-like HypA PF01155.19 gi|126466163|ref|YP_001041272.1| - 0.00074 19.5 1.0 0.16 12.0 0.1 2.4 2 1 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|126466163|ref|YP_001041272.1| - 0.0014 18.5 0.8 0.0058 16.6 0.6 1.9 1 1 0 1 1 1 1 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|126466163|ref|YP_001041272.1| - 0.0023 17.7 1.5 0.83 9.6 0.4 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|126466163|ref|YP_001041272.1| - 0.006 16.7 0.8 0.2 11.8 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|126466163|ref|YP_001041272.1| - 0.011 16.1 0.2 0.018 15.4 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.6 gi|126466163|ref|YP_001041272.1| - 0.012 15.4 0.7 0.32 10.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|126466163|ref|YP_001041272.1| - 0.019 15.0 2.2 1.1 9.4 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.6 gi|126466163|ref|YP_001041272.1| - 0.02 15.6 0.2 2 9.1 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.11 gi|126466163|ref|YP_001041272.1| - 0.02 14.5 1.4 1.6 8.5 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|126466163|ref|YP_001041272.1| - 0.022 14.5 0.9 0.51 10.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|126466163|ref|YP_001041272.1| - 0.054 13.2 1.6 3 7.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|126466163|ref|YP_001041272.1| - 0.059 13.1 1.8 0.54 10.0 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.16 gi|126466163|ref|YP_001041272.1| - 0.063 13.2 1.0 1.5 8.8 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Elf1 PF05129.13 gi|126466163|ref|YP_001041272.1| - 0.064 13.3 0.2 0.14 12.2 0.2 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.12 gi|126466163|ref|YP_001041272.1| - 0.068 13.1 0.5 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|126466163|ref|YP_001041272.1| - 0.076 12.5 0.9 0.36 10.4 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37ae PF01780.19 gi|126466163|ref|YP_001041272.1| - 0.08 13.0 0.9 7.8 6.7 0.1 2.3 2 0 0 2 2 2 0 Ribosomal L37ae protein family PriA_CRR PF18319.1 gi|126466163|ref|YP_001041272.1| - 0.11 12.5 1.3 7 6.7 0.3 2.2 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zf-ZPR1 PF03367.13 gi|126466163|ref|YP_001041272.1| - 0.13 12.1 0.7 0.59 10.0 0.7 2.0 1 1 0 1 1 1 0 ZPR1 zinc-finger domain zf-Dof PF02701.15 gi|126466163|ref|YP_001041272.1| - 0.24 11.6 2.3 3.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger zinc_ribbon_4 PF13717.6 gi|126466163|ref|YP_001041272.1| - 0.28 11.1 2.9 8.6 6.4 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|126466163|ref|YP_001041272.1| - 0.33 10.9 4.0 0.5 10.3 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|126466163|ref|YP_001041272.1| - 2.5 7.9 6.5 4.6 7.0 1.0 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Enolase_C PF00113.22 gi|126466164|ref|YP_001041273.1| - 8.3e-121 402.8 0.0 1.2e-120 402.3 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|126466164|ref|YP_001041273.1| - 1.5e-53 180.4 1.2 2e-53 180.0 0.5 1.6 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|126466164|ref|YP_001041273.1| - 8.5e-11 41.8 0.0 1.3e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like protein_MS5 PF04776.12 gi|126466164|ref|YP_001041273.1| - 0.11 12.6 0.2 0.22 11.6 0.2 1.4 1 0 0 1 1 1 0 Protein MS5 Mistic PF11458.8 gi|126466164|ref|YP_001041273.1| - 0.13 12.2 1.2 0.99 9.4 0.3 2.9 3 0 0 3 3 3 0 Membrane-integrating protein Mistic DUF1129 PF06570.11 gi|126466165|ref|YP_001041274.1| - 0.66 9.4 3.9 0.73 9.3 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) CdvA PF18822.1 gi|126466166|ref|YP_001041275.1| - 6.6e-38 129.3 12.6 1.6e-37 128.1 12.5 1.7 2 0 0 2 2 2 1 CdvA-like coiled-coil domain ISG65-75 PF11727.8 gi|126466166|ref|YP_001041275.1| - 0.00014 21.2 9.6 0.011 15.1 3.4 2.1 2 0 0 2 2 2 2 Invariant surface glycoprotein Fmp27_WPPW PF10359.9 gi|126466166|ref|YP_001041275.1| - 0.0004 19.4 6.0 0.0004 19.4 6.0 1.5 1 1 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain PRC PF05239.16 gi|126466166|ref|YP_001041275.1| - 0.0023 18.0 0.4 0.007 16.4 0.2 1.8 2 0 0 2 2 2 1 PRC-barrel domain FH2 PF02181.23 gi|126466166|ref|YP_001041275.1| - 0.0034 16.5 4.2 0.0034 16.5 4.2 2.0 1 1 0 2 2 2 1 Formin Homology 2 Domain DUF2992 PF11208.8 gi|126466166|ref|YP_001041275.1| - 0.0059 16.8 0.7 0.0059 16.8 0.7 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2992) Aconitase PF00330.20 gi|126466166|ref|YP_001041275.1| - 0.028 13.4 0.5 0.037 13.0 0.5 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Type2_restr_D3 PF16902.5 gi|126466166|ref|YP_001041275.1| - 0.036 14.0 2.0 0.77 9.7 0.0 2.6 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain RNA_pol_Rpb2_2 PF04561.14 gi|126466166|ref|YP_001041275.1| - 0.12 12.0 3.5 0.19 11.3 3.5 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 2 DNA_primase_lrg PF04104.14 gi|126466166|ref|YP_001041275.1| - 0.22 10.9 3.3 0.28 10.6 2.5 1.5 1 1 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit Glutaredoxin2_C PF04399.13 gi|126466166|ref|YP_001041275.1| - 0.84 9.5 4.9 0.38 10.6 1.7 1.9 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain Nsp1_C PF05064.13 gi|126466166|ref|YP_001041275.1| - 0.96 9.3 9.2 0.23 11.3 1.5 2.9 3 0 0 3 3 3 0 Nsp1-like C-terminal region Uso1_p115_C PF04871.13 gi|126466166|ref|YP_001041275.1| - 3.5 8.0 18.6 0.22 11.9 10.9 2.2 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region LMBR1 PF04791.16 gi|126466166|ref|YP_001041275.1| - 3.7 6.4 4.9 5.1 5.9 4.9 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein BLOC1_2 PF10046.9 gi|126466166|ref|YP_001041275.1| - 8.6 6.7 12.0 1.6 9.1 0.2 3.2 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|126466166|ref|YP_001041275.1| - 8.6 6.5 8.6 9.1 6.5 2.6 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Snf7 PF03357.21 gi|126466167|ref|YP_001041276.1| - 0.00029 20.5 0.2 0.0004 20.0 0.2 1.2 1 0 0 1 1 1 1 Snf7 Prefoldin_2 PF01920.20 gi|126466167|ref|YP_001041276.1| - 0.02 14.8 0.3 3 7.8 0.0 2.4 2 0 0 2 2 2 0 Prefoldin subunit DASH_Duo1 PF08651.10 gi|126466167|ref|YP_001041276.1| - 0.025 14.4 0.3 0.79 9.5 0.1 2.8 2 1 1 3 3 3 0 DASH complex subunit Duo1 TrmB PF01978.19 gi|126466167|ref|YP_001041276.1| - 0.051 13.5 0.0 0.16 11.9 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Prefoldin PF02996.17 gi|126466167|ref|YP_001041276.1| - 0.069 13.1 1.4 0.35 10.8 0.2 2.1 2 0 0 2 2 2 0 Prefoldin subunit AAA PF00004.29 gi|126466168|ref|YP_001041277.1| - 5.5e-35 120.7 0.0 9.8e-35 119.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|126466168|ref|YP_001041277.1| - 3.5e-14 52.6 1.1 9.7e-14 51.2 1.1 1.8 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_lid_3 PF17862.1 gi|126466168|ref|YP_001041277.1| - 3.9e-07 29.8 0.0 9.1e-07 28.6 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|126466168|ref|YP_001041277.1| - 1.9e-05 24.9 0.0 3.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|126466168|ref|YP_001041277.1| - 5.2e-05 23.0 0.0 0.00014 21.6 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Vps4_C PF09336.10 gi|126466168|ref|YP_001041277.1| - 6.1e-05 22.9 0.2 0.00073 19.5 0.0 2.6 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain TPR_1 PF00515.28 gi|126466168|ref|YP_001041277.1| - 9.2e-05 22.1 1.5 0.00029 20.5 1.5 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat AAA_16 PF13191.6 gi|126466168|ref|YP_001041277.1| - 0.00019 21.9 0.0 0.064 13.6 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 gi|126466168|ref|YP_001041277.1| - 0.00036 20.9 0.0 0.0027 18.1 0.0 2.3 3 0 0 3 3 2 1 RNA helicase AAA_5 PF07728.14 gi|126466168|ref|YP_001041277.1| - 0.00047 20.2 0.0 0.0013 18.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TPR_8 PF13181.6 gi|126466168|ref|YP_001041277.1| - 0.0008 19.4 1.2 0.0008 19.4 1.2 2.4 2 0 0 2 2 1 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126466168|ref|YP_001041277.1| - 0.0012 18.8 1.7 0.0057 16.7 1.3 2.4 1 1 1 2 2 2 1 Tetratricopeptide repeat AAA_22 PF13401.6 gi|126466168|ref|YP_001041277.1| - 0.0016 18.7 0.0 0.052 13.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|126466168|ref|YP_001041277.1| - 0.0023 17.2 0.0 0.0037 16.5 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|126466168|ref|YP_001041277.1| - 0.0037 17.0 0.0 0.006 16.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|126466168|ref|YP_001041277.1| - 0.0037 17.3 0.0 0.0098 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain TPR_7 PF13176.6 gi|126466168|ref|YP_001041277.1| - 0.0039 17.1 0.1 0.013 15.4 0.1 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat AAA_7 PF12775.7 gi|126466168|ref|YP_001041277.1| - 0.0066 16.0 0.0 0.025 14.1 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|126466168|ref|YP_001041277.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.21 gi|126466168|ref|YP_001041277.1| - 0.011 15.1 0.0 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|126466168|ref|YP_001041277.1| - 0.014 15.9 0.0 0.042 14.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain TPR_11 PF13414.6 gi|126466168|ref|YP_001041277.1| - 0.022 14.4 0.2 0.053 13.2 0.2 1.6 1 0 0 1 1 1 0 TPR repeat AAA_25 PF13481.6 gi|126466168|ref|YP_001041277.1| - 0.042 13.4 0.1 0.12 11.9 0.0 1.6 1 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|126466168|ref|YP_001041277.1| - 0.059 13.3 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|126466168|ref|YP_001041277.1| - 0.065 13.0 0.0 0.099 12.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase T2SSE PF00437.20 gi|126466168|ref|YP_001041277.1| - 0.081 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|126466168|ref|YP_001041277.1| - 0.081 12.2 0.0 0.2 10.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|126466168|ref|YP_001041277.1| - 0.095 13.2 0.0 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DUF5113 PF17140.4 gi|126466168|ref|YP_001041277.1| - 0.1 12.4 0.3 0.23 11.3 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) AAA_28 PF13521.6 gi|126466168|ref|YP_001041277.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain TPR_12 PF13424.6 gi|126466168|ref|YP_001041277.1| - 0.27 11.5 2.1 0.71 10.2 0.3 2.5 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126466168|ref|YP_001041277.1| - 0.38 11.5 1.4 6.9 7.5 1.1 2.9 2 1 0 2 2 1 0 Tetratricopeptide repeat PAC2 PF09754.9 gi|126466169|ref|YP_001041278.1| - 1.2e-40 139.8 0.2 1.4e-40 139.6 0.2 1.0 1 0 0 1 1 1 1 PAC2 family HSP20 PF00011.21 gi|126466170|ref|YP_001041279.1| - 2.1e-06 27.8 0.0 3.2e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|126466170|ref|YP_001041279.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 1 0 1 1 1 0 HSP20-like domain found in ArsA TGS PF02824.21 gi|126466171|ref|YP_001041280.1| - 6.6e-19 67.7 0.0 1.3e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|126466171|ref|YP_001041280.1| - 2.7e-18 65.9 0.4 4.3e-18 65.3 0.4 1.3 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|126466171|ref|YP_001041280.1| - 2.3e-14 53.4 0.0 6.3e-14 52.0 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|126466171|ref|YP_001041280.1| - 7.5e-09 35.3 0.0 8.1e-08 31.9 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|126466171|ref|YP_001041280.1| - 9.8e-05 22.0 0.4 0.24 10.9 0.1 3.1 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 gi|126466171|ref|YP_001041280.1| - 0.0013 18.9 0.6 0.09 13.0 0.0 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF933) Arf PF00025.21 gi|126466171|ref|YP_001041280.1| - 0.0016 17.9 0.5 0.016 14.7 0.0 2.6 3 1 0 4 4 4 1 ADP-ribosylation factor family cobW PF02492.19 gi|126466171|ref|YP_001041280.1| - 0.0056 16.3 0.9 0.32 10.6 0.1 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|126466171|ref|YP_001041280.1| - 0.0057 16.6 1.1 0.61 10.0 0.0 2.6 3 0 0 3 3 3 1 RsgA GTPase KTI12 PF08433.10 gi|126466171|ref|YP_001041280.1| - 0.036 13.5 0.2 0.081 12.4 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|126466171|ref|YP_001041280.1| - 0.047 13.8 0.5 0.25 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|126466171|ref|YP_001041280.1| - 0.059 12.3 0.3 0.71 8.8 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|126466171|ref|YP_001041280.1| - 0.067 13.2 0.1 0.31 11.1 0.1 2.0 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|126466171|ref|YP_001041280.1| - 0.099 12.4 0.6 6.7 6.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|126466171|ref|YP_001041280.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.6 gi|126466171|ref|YP_001041280.1| - 0.14 12.7 0.7 0.31 11.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain DDT PF02791.17 gi|126466171|ref|YP_001041280.1| - 0.19 12.1 0.0 0.51 10.7 0.0 1.7 1 1 0 1 1 1 0 DDT domain G-alpha PF00503.20 gi|126466171|ref|YP_001041280.1| - 0.21 10.7 0.0 0.42 9.7 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit RNase_HII PF01351.18 gi|126466172|ref|YP_001041281.1| - 1e-39 136.5 0.1 1.2e-39 136.2 0.1 1.1 1 0 0 1 1 1 1 Ribonuclease HII ABC_sub_bind PF04392.12 gi|126466172|ref|YP_001041281.1| - 0.017 14.4 3.8 0.023 14.0 3.8 1.1 1 0 0 1 1 1 0 ABC transporter substrate binding protein AP_endonuc_2 PF01261.24 gi|126466173|ref|YP_001041282.1| - 8.2e-11 41.7 0.0 2.3e-10 40.3 0.0 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1891 PF09004.10 gi|126466173|ref|YP_001041282.1| - 0.011 15.3 0.4 0.022 14.3 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1891) HisKA PF00512.25 gi|126466175|ref|YP_001041284.1| - 0.093 12.8 0.5 0.093 12.8 0.5 1.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain NUC130_3NT PF08158.12 gi|126466175|ref|YP_001041284.1| - 0.17 12.2 0.2 5.9 7.3 0.1 2.6 2 0 0 2 2 2 0 NUC130/3NT domain PGM_PMM_I PF02878.16 gi|126466176|ref|YP_001041285.1| - 5.5e-45 152.5 0.0 1.1e-44 151.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|126466176|ref|YP_001041285.1| - 3.9e-26 91.7 0.1 1.7e-25 89.6 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|126466176|ref|YP_001041285.1| - 8.1e-23 80.8 0.0 2.1e-22 79.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|126466176|ref|YP_001041285.1| - 1.9e-12 47.2 0.0 5.7e-12 45.6 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain RRF PF01765.19 gi|126466176|ref|YP_001041285.1| - 0.12 12.3 1.5 0.69 9.9 0.3 2.1 1 1 1 2 2 2 0 Ribosome recycling factor Trm112p PF03966.16 gi|126466177|ref|YP_001041286.1| - 1.4e-11 44.8 1.8 2.3e-11 44.1 1.8 1.3 1 0 0 1 1 1 1 Trm112p-like protein Anti-TRAP PF15777.5 gi|126466177|ref|YP_001041286.1| - 0.075 13.0 0.3 0.21 11.5 0.2 1.8 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-UDP PF14569.6 gi|126466177|ref|YP_001041286.1| - 0.12 12.5 2.1 0.41 10.8 2.1 1.9 1 1 0 1 1 1 0 Zinc-binding RING-finger DUF2724 PF10893.8 gi|126466177|ref|YP_001041286.1| - 0.17 11.7 0.3 0.25 11.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2724) DUF2153 PF09921.9 gi|126466178|ref|YP_001041287.1| - 8.8e-53 177.3 5.3 1e-52 177.1 5.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) AbiJ_NTD4 PF18863.1 gi|126466178|ref|YP_001041287.1| - 0.016 15.7 1.3 1 9.8 0.2 2.1 1 1 1 2 2 2 0 AbiJ N-terminal domain 4 ApoB100_C PF12491.8 gi|126466178|ref|YP_001041287.1| - 0.31 11.0 4.4 0.97 9.4 0.3 2.3 2 0 0 2 2 2 0 Apolipoprotein B100 C terminal DUF4364 PF14277.6 gi|126466179|ref|YP_001041288.1| - 0.0087 15.8 1.7 0.015 15.1 1.6 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) Reticulon PF02453.17 gi|126466180|ref|YP_001041289.1| - 0.00026 21.0 0.7 0.00026 21.0 0.7 2.2 1 1 0 2 2 2 1 Reticulon Phage_holin_6_1 PF09682.10 gi|126466180|ref|YP_001041289.1| - 0.015 15.7 0.7 0.015 15.7 0.7 3.4 3 0 0 3 3 3 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Cytochrom_B562 PF07361.11 gi|126466180|ref|YP_001041289.1| - 0.036 14.7 0.7 0.35 11.5 0.1 2.3 2 1 0 2 2 2 0 Cytochrome b562 IF-2B PF01008.17 gi|126466180|ref|YP_001041289.1| - 0.046 12.9 3.6 0.17 11.1 0.5 2.2 2 0 0 2 2 2 0 Initiation factor 2 subunit family Fib_alpha PF08702.10 gi|126466180|ref|YP_001041289.1| - 0.58 10.3 10.2 0.78 9.9 3.7 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Nup54 PF13874.6 gi|126466180|ref|YP_001041289.1| - 0.74 9.9 3.8 9 6.4 0.3 2.4 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 RNA_pol_Rpb4 PF03874.16 gi|126466180|ref|YP_001041289.1| - 0.83 10.0 11.1 2.3 8.6 4.1 3.3 2 1 0 2 2 2 0 RNA polymerase Rpb4 RIH_assoc PF08454.11 gi|126466180|ref|YP_001041289.1| - 3.4 7.6 9.0 8.3 6.3 1.2 2.7 3 1 0 3 3 3 0 RyR and IP3R Homology associated ThrE PF06738.12 gi|126466180|ref|YP_001041289.1| - 6.2 6.1 18.2 1.4 8.2 0.2 3.0 1 1 2 3 3 3 0 Putative threonine/serine exporter TIP49 PF06068.13 gi|126466181|ref|YP_001041290.1| - 1e-143 478.8 0.2 1.4e-143 478.3 0.2 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|126466181|ref|YP_001041290.1| - 7.1e-26 90.1 2.1 3.4e-25 88.0 1.5 2.4 3 0 0 3 3 3 1 TIP49 AAA-lid domain AAA PF00004.29 gi|126466181|ref|YP_001041290.1| - 3e-12 47.1 0.5 4.8e-09 36.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|126466181|ref|YP_001041290.1| - 1.4e-08 34.6 0.4 7.1e-06 25.9 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|126466181|ref|YP_001041290.1| - 9.3e-08 32.4 0.2 0.0045 17.3 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.6 gi|126466181|ref|YP_001041290.1| - 1.3e-05 25.6 0.5 0.00012 22.5 0.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_lid_2 PF17863.1 gi|126466181|ref|YP_001041290.1| - 6.6e-05 22.7 0.2 0.0014 18.5 0.1 2.5 2 0 0 2 2 2 1 AAA lid domain AAA_7 PF12775.7 gi|126466181|ref|YP_001041290.1| - 0.00019 21.0 0.0 0.0052 16.3 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|126466181|ref|YP_001041290.1| - 0.00024 21.1 0.1 0.0011 19.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|126466181|ref|YP_001041290.1| - 0.00029 20.5 0.1 0.0006 19.4 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|126466181|ref|YP_001041290.1| - 0.00065 20.1 1.7 0.015 15.6 1.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126466181|ref|YP_001041290.1| - 0.00065 20.2 0.0 0.0023 18.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|126466181|ref|YP_001041290.1| - 0.00078 19.7 0.6 0.0025 18.1 0.0 2.1 3 0 0 3 3 2 1 AAA domain Mg_chelatase PF01078.21 gi|126466181|ref|YP_001041290.1| - 0.0013 18.1 0.4 0.0042 16.5 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|126466181|ref|YP_001041290.1| - 0.0015 18.3 0.1 0.0033 17.2 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2075 PF09848.9 gi|126466181|ref|YP_001041290.1| - 0.016 14.5 0.0 0.04 13.2 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|126466181|ref|YP_001041290.1| - 0.017 14.8 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_17 PF13207.6 gi|126466181|ref|YP_001041290.1| - 0.021 15.2 0.1 0.42 11.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain TFIID-31kDa PF02291.15 gi|126466181|ref|YP_001041290.1| - 0.033 14.3 0.1 1.6 8.8 0.0 2.5 2 1 0 2 2 2 0 Transcription initiation factor IID, 31kD subunit DnaB_C PF03796.15 gi|126466181|ref|YP_001041290.1| - 0.034 13.5 0.1 0.091 12.1 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_33 PF13671.6 gi|126466181|ref|YP_001041290.1| - 0.04 14.1 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|126466181|ref|YP_001041290.1| - 0.042 13.1 0.0 0.097 11.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|126466181|ref|YP_001041290.1| - 0.046 14.1 0.0 0.096 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.16 gi|126466181|ref|YP_001041290.1| - 0.047 13.1 0.1 0.12 11.8 0.1 1.7 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.6 gi|126466181|ref|YP_001041290.1| - 0.065 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|126466181|ref|YP_001041290.1| - 0.069 13.2 0.1 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|126466181|ref|YP_001041290.1| - 0.075 13.5 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter IPT PF01745.16 gi|126466181|ref|YP_001041290.1| - 0.098 12.0 0.2 0.3 10.4 0.0 1.8 2 0 0 2 2 2 0 Isopentenyl transferase AAA_30 PF13604.6 gi|126466181|ref|YP_001041290.1| - 0.1 12.3 0.2 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|126466181|ref|YP_001041290.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Pyridoxal_deC PF00282.19 gi|126466182|ref|YP_001041291.1| - 2.8e-26 92.1 0.0 2.6e-25 89.0 0.0 2.2 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|126466182|ref|YP_001041291.1| - 4e-08 32.6 0.0 8.9e-08 31.5 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|126466182|ref|YP_001041291.1| - 1.3e-07 31.2 0.1 5.7e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|126466182|ref|YP_001041291.1| - 0.00019 20.9 0.0 0.00062 19.1 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|126466182|ref|YP_001041291.1| - 0.086 11.6 0.1 0.19 10.4 0.1 1.6 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SepSecS PF05889.13 gi|126466182|ref|YP_001041291.1| - 0.11 11.2 0.1 0.15 10.7 0.1 1.3 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Holin_BlyA PF05102.12 gi|126466184|ref|YP_001041293.1| - 0.12 12.3 0.7 0.12 12.3 0.7 2.4 2 1 0 2 2 2 0 holin, BlyA family Col_cuticle_N PF01484.17 gi|126466184|ref|YP_001041293.1| - 0.51 10.5 1.6 1 9.5 1.6 1.5 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain Chordopox_A13L PF05961.11 gi|126466184|ref|YP_001041293.1| - 0.51 10.6 3.7 1.2 9.5 3.7 1.7 1 1 0 1 1 1 0 Chordopoxvirus A13L protein HTH_5 PF01022.20 gi|126466185|ref|YP_001041294.1| - 9.3e-12 44.6 0.9 1.5e-11 44.0 0.9 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|126466185|ref|YP_001041294.1| - 1.2e-11 44.0 0.3 1.9e-11 43.3 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|126466185|ref|YP_001041294.1| - 4e-10 39.6 0.0 5.9e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|126466185|ref|YP_001041294.1| - 3.1e-08 33.4 0.0 4.4e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|126466185|ref|YP_001041294.1| - 9e-06 25.5 0.1 1.3e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|126466185|ref|YP_001041294.1| - 7.1e-05 22.7 0.6 0.00017 21.4 0.2 1.8 1 1 1 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|126466185|ref|YP_001041294.1| - 0.00025 21.3 0.1 0.0004 20.7 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_34 PF13601.6 gi|126466185|ref|YP_001041294.1| - 0.00073 19.7 0.0 0.0011 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.11 gi|126466185|ref|YP_001041294.1| - 0.0052 17.4 0.0 0.0079 16.8 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.19 gi|126466185|ref|YP_001041294.1| - 0.0053 16.6 0.1 0.0078 16.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|126466185|ref|YP_001041294.1| - 0.0057 17.1 0.1 0.0095 16.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|126466185|ref|YP_001041294.1| - 0.014 15.2 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|126466185|ref|YP_001041294.1| - 0.018 15.2 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_43 PF09904.9 gi|126466185|ref|YP_001041294.1| - 0.036 14.0 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix B-block_TFIIIC PF04182.12 gi|126466185|ref|YP_001041294.1| - 0.037 14.2 0.1 0.082 13.1 0.0 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.9 gi|126466185|ref|YP_001041294.1| - 0.094 13.0 0.0 0.16 12.3 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_Crp_2 PF13545.6 gi|126466185|ref|YP_001041294.1| - 0.13 12.2 0.9 0.27 11.2 0.1 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain RIO1 PF01163.22 gi|126466186|ref|YP_001041295.1| - 2.5e-42 144.6 0.0 3.6e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|126466186|ref|YP_001041295.1| - 1.6e-20 73.1 0.9 2.7e-20 72.4 0.9 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|126466186|ref|YP_001041295.1| - 9.8e-07 28.9 0.1 1.1e-05 25.5 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|126466186|ref|YP_001041295.1| - 0.017 14.5 0.1 0.2 11.0 0.1 2.1 1 1 0 1 1 1 0 Protein kinase domain Kdo PF06293.14 gi|126466186|ref|YP_001041295.1| - 0.023 14.1 0.1 0.43 9.9 0.0 2.3 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|126466186|ref|YP_001041295.1| - 0.043 12.6 0.0 0.058 12.2 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Choline_kinase PF01633.20 gi|126466186|ref|YP_001041295.1| - 0.072 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Choline/ethanolamine kinase Fructosamin_kin PF03881.14 gi|126466186|ref|YP_001041295.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Fructosamine kinase DUF460 PF04312.13 gi|126466187|ref|YP_001041296.1| - 2.6e-49 166.6 0.0 1.2e-46 157.9 0.0 2.9 2 0 0 2 2 2 2 Protein of unknown function (DUF460) CCDC85 PF10226.9 gi|126466187|ref|YP_001041296.1| - 0.076 12.7 9.1 0.15 11.7 9.1 1.4 1 0 0 1 1 1 0 CCDC85 family Tropomyosin_1 PF12718.7 gi|126466187|ref|YP_001041296.1| - 0.37 10.9 20.9 0.024 14.8 12.6 2.5 2 1 0 2 2 2 0 Tropomyosin like Exonuc_VII_L PF02601.15 gi|126466187|ref|YP_001041296.1| - 0.75 9.3 5.5 1.3 8.5 5.5 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit AdoMet_Synthase PF01941.19 gi|126466188|ref|YP_001041297.1| - 2e-176 586.6 2.3 2.2e-176 586.5 2.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) FbpA PF05833.11 gi|126466189|ref|YP_001041298.1| - 6.9e-45 153.6 12.7 9.3e-45 153.2 12.7 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|126466189|ref|YP_001041298.1| - 3.9e-29 101.5 0.3 1.1e-28 100.0 0.0 1.9 2 0 0 2 2 2 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|126466189|ref|YP_001041298.1| - 6.8e-06 26.2 0.4 1.6e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 NFACT protein RNA binding domain Rbsn PF11464.8 gi|126466189|ref|YP_001041298.1| - 0.0071 16.1 0.5 0.0071 16.1 0.5 2.5 3 0 0 3 3 3 1 Rabenosyn Rab binding domain LMBR1 PF04791.16 gi|126466189|ref|YP_001041298.1| - 0.29 10.0 3.2 0.44 9.4 3.2 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein QIL1 PF15884.5 gi|126466189|ref|YP_001041298.1| - 3.7 8.2 6.8 18 6.0 1.8 3.2 3 0 0 3 3 3 0 MICOS complex subunit MIC13, QIL1 DUF5379 PF17350.2 gi|126466190|ref|YP_001041299.1| - 0.0046 17.2 8.0 0.0055 17.0 8.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5379) RNA_Me_trans PF04252.13 gi|126466191|ref|YP_001041300.1| - 5.1e-49 166.6 0.0 6.2e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF4296 PF14129.6 gi|126466191|ref|YP_001041300.1| - 0.051 14.2 1.4 1.1 9.9 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4296) NucS PF01939.16 gi|126466192|ref|YP_001041301.1| - 3e-52 177.3 0.3 3.7e-52 177.0 0.3 1.0 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_3 PF13366.6 gi|126466192|ref|YP_001041301.1| - 0.0002 21.7 0.7 0.0037 17.6 0.1 2.3 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily PDDEXK_9 PF08011.11 gi|126466192|ref|YP_001041301.1| - 0.0095 15.8 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily SfsA PF03749.13 gi|126466192|ref|YP_001041301.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Sugar fermentation stimulation protein RE domain ScsC_N PF18312.1 gi|126466192|ref|YP_001041301.1| - 0.26 11.1 1.0 0.56 10.1 1.0 1.6 1 0 0 1 1 1 0 Copper resistance protein ScsC N-terminal domain Methyltransf_25 PF13649.6 gi|126466193|ref|YP_001041302.1| - 2.4e-14 53.8 0.0 3.4e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126466193|ref|YP_001041302.1| - 3e-14 53.4 0.0 4.2e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|126466193|ref|YP_001041302.1| - 6e-10 38.9 0.0 7.5e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|126466193|ref|YP_001041302.1| - 7e-10 38.9 0.0 9.9e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126466193|ref|YP_001041302.1| - 8.7e-10 39.2 0.0 1.7e-09 38.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|126466193|ref|YP_001041302.1| - 2.4e-09 37.3 0.0 3.2e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|126466193|ref|YP_001041302.1| - 3.8e-05 22.8 0.0 4.5e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Ubie_methyltran PF01209.18 gi|126466193|ref|YP_001041302.1| - 8.1e-05 22.1 0.0 9.7e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|126466193|ref|YP_001041302.1| - 0.023 14.4 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|126466193|ref|YP_001041302.1| - 0.026 14.1 0.0 0.041 13.4 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase small domain MetW PF07021.12 gi|126466193|ref|YP_001041302.1| - 0.069 12.7 0.1 0.093 12.3 0.1 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|126466193|ref|YP_001041302.1| - 0.11 12.5 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SSPI PF14098.6 gi|126466193|ref|YP_001041302.1| - 0.11 12.6 0.4 0.24 11.6 0.4 1.6 1 0 0 1 1 1 0 Small, acid-soluble spore protein I Methyltransf_2 PF00891.18 gi|126466193|ref|YP_001041302.1| - 0.14 11.5 0.0 0.41 9.9 0.0 1.6 1 1 0 1 1 1 0 O-methyltransferase domain LSM PF01423.22 gi|126466194|ref|YP_001041303.1| - 4.4e-21 74.3 0.2 5e-21 74.2 0.2 1.0 1 0 0 1 1 1 1 LSM domain LSM14 PF12701.7 gi|126466194|ref|YP_001041303.1| - 0.00061 19.8 0.3 0.00084 19.4 0.3 1.3 1 0 0 1 1 1 1 Scd6-like Sm domain SM-ATX PF14438.6 gi|126466194|ref|YP_001041303.1| - 0.004 17.3 0.1 0.0048 17.0 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain CBS PF00571.28 gi|126466195|ref|YP_001041304.1| - 1.4e-26 92.7 5.5 2e-12 47.3 0.0 2.2 2 0 0 2 2 2 2 CBS domain GTP_cyclohydro2 PF00925.20 gi|126466195|ref|YP_001041304.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II CBS PF00571.28 gi|126466196|ref|YP_001041305.1| - 2.9e-46 155.7 12.4 4.1e-13 49.6 0.3 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|126466197|ref|YP_001041306.1| - 3.9e-27 94.5 15.6 1.1e-06 29.0 0.4 4.4 4 1 0 4 4 4 4 CBS domain Acetyltransf_10 PF13673.7 gi|126466197|ref|YP_001041306.1| - 0.076 13.0 0.0 0.37 10.7 0.0 2.2 1 1 2 3 3 3 0 Acetyltransferase (GNAT) domain Mut7-C PF01927.16 gi|126466198|ref|YP_001041307.1| - 1.3e-49 168.1 0.0 1.5e-49 167.8 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|126466198|ref|YP_001041307.1| - 5.4e-06 26.1 0.0 9.9e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) PIN_9 PF18477.1 gi|126466198|ref|YP_001041307.1| - 0.0066 16.8 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 PIN like domain DUF4428 PF14471.6 gi|126466198|ref|YP_001041307.1| - 0.038 13.9 1.9 1.4 8.9 1.9 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Zn_ribbon_SprT PF17283.2 gi|126466198|ref|YP_001041307.1| - 0.07 13.1 1.2 4.8 7.2 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|126466198|ref|YP_001041307.1| - 0.11 12.5 0.2 3.6 7.6 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Prok-RING_1 PF14446.6 gi|126466198|ref|YP_001041307.1| - 0.14 12.1 0.4 0.58 10.1 0.4 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|126466198|ref|YP_001041307.1| - 0.21 11.5 0.4 0.21 11.5 0.4 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif AMMECR1 PF01871.17 gi|126466199|ref|YP_001041308.1| - 1.1e-46 158.5 0.0 1.3e-46 158.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NAD_synthase PF02540.17 gi|126466200|ref|YP_001041309.1| - 1.1e-75 253.9 0.0 1.3e-75 253.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|126466200|ref|YP_001041309.1| - 3.1e-06 26.2 0.0 0.0004 19.3 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|126466200|ref|YP_001041309.1| - 0.014 14.9 0.0 0.041 13.4 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|126466200|ref|YP_001041309.1| - 0.074 12.7 0.0 0.58 9.7 0.0 1.9 1 1 0 2 2 2 0 Asparagine synthase ATP_bind_3 PF01171.20 gi|126466200|ref|YP_001041309.1| - 0.085 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 PP-loop family PAPS_reduct PF01507.19 gi|126466200|ref|YP_001041309.1| - 0.094 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Metallophos PF00149.28 gi|126466201|ref|YP_001041310.1| - 2.7e-16 60.7 5.0 4.9e-16 59.8 5.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126466201|ref|YP_001041310.1| - 4.2e-14 53.1 0.0 7.5e-14 52.3 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|126466201|ref|YP_001041310.1| - 2.8e-12 46.5 2.5 1.6e-09 37.5 2.5 2.1 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Hydrolase_6 PF13344.6 gi|126466202|ref|YP_001041311.1| - 3.4e-23 81.7 0.0 6.6e-23 80.7 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|126466202|ref|YP_001041311.1| - 1.1e-19 70.2 0.0 2.2e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|126466202|ref|YP_001041311.1| - 4e-07 30.5 0.0 1.8e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|126466202|ref|YP_001041311.1| - 9.1e-06 25.9 0.0 0.00017 21.7 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|126466202|ref|YP_001041311.1| - 0.02 14.5 0.2 0.05 13.2 0.1 1.7 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase Acid_phosphat_B PF03767.14 gi|126466202|ref|YP_001041311.1| - 0.16 11.5 0.1 0.33 10.5 0.1 1.5 1 1 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) DUF5622 PF18533.1 gi|126466204|ref|YP_001041313.1| - 4e-29 100.5 8.1 4.9e-29 100.3 8.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) GtrA PF04138.14 gi|126466205|ref|YP_001041314.1| - 1.8e-20 73.3 13.4 3.4e-20 72.4 13.4 1.4 1 0 0 1 1 1 1 GtrA-like protein UDG PF03167.19 gi|126466206|ref|YP_001041315.1| - 7.3e-46 156.0 0.0 1e-45 155.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF3149 PF11346.8 gi|126466207|ref|YP_001041316.1| - 0.019 14.6 0.0 0.059 13.0 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) Lon_C PF05362.13 gi|126466207|ref|YP_001041316.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Lon protease (S16) C-terminal proteolytic domain YnfE PF17452.2 gi|126466207|ref|YP_001041316.1| - 0.042 14.2 0.0 0.16 12.3 0.0 2.0 1 0 0 1 1 1 0 Uncharacterized YnfE-like Birna_VP4 PF01768.16 gi|126466207|ref|YP_001041316.1| - 0.048 13.5 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Birnavirus VP4 protein DNA_ligase_A_M PF01068.21 gi|126466208|ref|YP_001041317.1| - 1.5e-63 214.2 0.2 2.4e-63 213.5 0.2 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|126466208|ref|YP_001041317.1| - 1.3e-39 136.3 0.2 2.1e-39 135.6 0.2 1.3 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|126466208|ref|YP_001041317.1| - 4.6e-25 88.1 0.0 1.1e-24 86.9 0.0 1.7 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|126466208|ref|YP_001041317.1| - 0.042 13.9 1.3 0.82 9.7 0.0 2.8 3 0 0 3 3 3 0 DNA ligase OB-like domain YfdX PF10938.8 gi|126466208|ref|YP_001041317.1| - 0.13 12.2 0.1 0.32 10.9 0.1 1.6 1 0 0 1 1 1 0 YfdX protein ATP_bind_1 PF03029.17 gi|126466209|ref|YP_001041318.1| - 1.2e-47 162.7 0.0 1.4e-47 162.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|126466209|ref|YP_001041318.1| - 4.4e-08 32.9 0.1 0.0068 16.0 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|126466209|ref|YP_001041318.1| - 5.6e-05 22.9 0.0 8.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|126466209|ref|YP_001041318.1| - 0.00015 22.1 0.0 0.00032 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|126466209|ref|YP_001041318.1| - 0.00017 21.2 0.6 0.0028 17.2 0.1 2.5 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|126466209|ref|YP_001041318.1| - 0.00037 20.4 1.0 0.33 10.8 0.0 3.5 2 1 1 3 3 3 1 RsgA GTPase SRP54 PF00448.22 gi|126466209|ref|YP_001041318.1| - 0.00047 19.8 0.0 0.053 13.1 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|126466209|ref|YP_001041318.1| - 0.00055 19.8 0.0 0.023 14.5 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|126466209|ref|YP_001041318.1| - 0.0006 19.8 0.0 1.2 9.0 0.0 2.2 2 0 0 2 2 2 2 NTPase Gtr1_RagA PF04670.12 gi|126466209|ref|YP_001041318.1| - 0.0018 17.7 0.0 0.0072 15.7 0.0 1.8 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region AAA_16 PF13191.6 gi|126466209|ref|YP_001041318.1| - 0.0019 18.6 0.0 0.0027 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|126466209|ref|YP_001041318.1| - 0.0021 18.1 0.0 0.02 15.0 0.0 2.4 1 1 1 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|126466209|ref|YP_001041318.1| - 0.0054 16.9 0.0 0.0099 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126466209|ref|YP_001041318.1| - 0.0058 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|126466209|ref|YP_001041318.1| - 0.0059 16.3 1.0 1.8 8.3 0.0 3.3 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_5 PF07728.14 gi|126466209|ref|YP_001041318.1| - 0.0074 16.3 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Roc PF08477.13 gi|126466209|ref|YP_001041318.1| - 0.025 14.8 0.1 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|126466209|ref|YP_001041318.1| - 0.047 13.3 0.0 4.9 6.7 0.0 2.3 2 0 0 2 2 2 0 Ras family AAA_29 PF13555.6 gi|126466209|ref|YP_001041318.1| - 0.047 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|126466209|ref|YP_001041318.1| - 0.048 13.6 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.27 gi|126466209|ref|YP_001041318.1| - 0.05 14.1 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_7 PF12775.7 gi|126466209|ref|YP_001041318.1| - 0.059 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region FeoB_N PF02421.18 gi|126466209|ref|YP_001041318.1| - 0.067 12.7 0.1 0.71 9.4 0.0 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.10 gi|126466209|ref|YP_001041318.1| - 0.089 12.2 0.2 12 5.3 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA PF00004.29 gi|126466209|ref|YP_001041318.1| - 0.11 12.9 0.7 0.21 12.0 0.0 2.0 3 1 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|126466209|ref|YP_001041318.1| - 0.13 12.8 0.4 0.2 12.1 0.4 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|126466209|ref|YP_001041318.1| - 0.13 12.6 0.1 0.41 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain MitoNEET_N PF10660.9 gi|126466210|ref|YP_001041319.1| - 0.45 10.6 5.7 2.2 8.4 0.3 2.8 2 1 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF2070 PF09843.9 gi|126466211|ref|YP_001041320.1| - 9.1e-105 351.1 9.1 1e-104 350.9 9.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2100 PF09873.9 gi|126466211|ref|YP_001041320.1| - 0.015 15.2 3.1 3.1 7.6 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2100) TBP PF00352.21 gi|126466212|ref|YP_001041321.1| - 1.2e-59 198.2 0.1 7.4e-29 99.5 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|126466212|ref|YP_001041321.1| - 2.4e-06 27.6 0.0 0.06 13.5 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) RTT107_BRCT_5 PF16770.5 gi|126466212|ref|YP_001041321.1| - 0.0086 15.9 0.4 0.061 13.2 0.1 2.1 2 0 0 2 2 2 1 Regulator of Ty1 transposition protein 107 BRCT domain Spore_YhaL PF14147.6 gi|126466212|ref|YP_001041321.1| - 0.045 13.5 0.1 0.48 10.1 0.0 2.3 2 0 0 2 2 2 0 Sporulation protein YhaL Peptidase_M48 PF01435.18 gi|126466214|ref|YP_001041323.1| - 6.2e-43 146.9 0.0 1.1e-42 146.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|126466214|ref|YP_001041323.1| - 0.21 10.7 2.8 0.13 11.5 0.7 1.8 2 1 0 2 2 2 0 BlaR1 peptidase M56 Tad PF13400.6 gi|126466214|ref|YP_001041323.1| - 0.93 9.8 0.0 0.93 9.8 0.0 3.1 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like CBF_beta PF02312.17 gi|126466215|ref|YP_001041324.1| - 0.004 16.8 0.0 0.0093 15.6 0.0 1.6 1 1 0 1 1 1 1 Core binding factor beta subunit Metallophos PF00149.28 gi|126466216|ref|YP_001041325.1| - 5.7e-07 30.2 1.1 1.1e-05 26.0 0.1 2.2 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|126466216|ref|YP_001041325.1| - 6.9e-05 23.1 0.0 0.00014 22.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HAD PF12710.7 gi|126466216|ref|YP_001041325.1| - 0.026 14.9 0.0 0.039 14.3 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|126466217|ref|YP_001041326.1| - 3e-22 79.8 0.0 4.3e-22 79.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Methyltransf_25 PF13649.6 gi|126466218|ref|YP_001041327.1| - 0.0079 16.9 0.0 0.011 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|126466218|ref|YP_001041327.1| - 0.012 15.2 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|126466218|ref|YP_001041327.1| - 0.029 13.4 0.0 0.035 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|126466218|ref|YP_001041327.1| - 0.044 14.4 0.0 0.069 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|126466218|ref|YP_001041327.1| - 0.08 12.5 0.0 0.31 10.5 0.0 1.8 2 1 1 3 3 3 0 Histone methylation protein DOT1 CMAS PF02353.20 gi|126466218|ref|YP_001041327.1| - 0.11 11.8 0.0 0.14 11.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase ABC_tran PF00005.27 gi|126466219|ref|YP_001041328.1| - 1.5e-30 106.5 0.0 2.5e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|126466219|ref|YP_001041328.1| - 1.7e-20 73.3 0.1 3.1e-20 72.5 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|126466219|ref|YP_001041328.1| - 6.9e-08 32.2 0.8 7.9e-07 28.7 0.4 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126466219|ref|YP_001041328.1| - 4.1e-06 26.8 0.3 1.1e-05 25.4 0.1 1.8 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126466219|ref|YP_001041328.1| - 0.0045 17.3 2.3 0.15 12.3 2.3 2.2 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|126466219|ref|YP_001041328.1| - 0.018 14.5 0.8 0.084 12.3 0.4 2.1 2 0 0 2 2 2 0 Bacterial TniB protein PRK PF00485.18 gi|126466219|ref|YP_001041328.1| - 0.023 14.5 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|126466219|ref|YP_001041328.1| - 0.025 15.0 0.5 0.58 10.6 0.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|126466219|ref|YP_001041328.1| - 0.039 13.9 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|126466219|ref|YP_001041328.1| - 0.085 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|126466219|ref|YP_001041328.1| - 0.1 13.0 0.0 0.25 11.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.25 gi|126466219|ref|YP_001041328.1| - 0.12 12.0 0.1 0.24 11.0 0.1 1.7 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 gi|126466219|ref|YP_001041328.1| - 0.12 11.9 0.0 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|126466219|ref|YP_001041328.1| - 0.18 11.9 0.4 0.89 9.6 0.0 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|126466219|ref|YP_001041328.1| - 0.22 11.2 0.3 0.79 9.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|126466220|ref|YP_001041329.1| - 1e-26 94.0 0.0 1.8e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|126466220|ref|YP_001041329.1| - 4e-19 68.9 0.1 8.1e-19 67.9 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|126466220|ref|YP_001041329.1| - 0.00057 19.8 0.1 0.03 14.2 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|126466220|ref|YP_001041329.1| - 0.092 13.0 0.0 0.43 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|126466220|ref|YP_001041329.1| - 0.13 12.0 0.3 0.24 11.1 0.3 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Viral_helicase1 PF01443.18 gi|126466220|ref|YP_001041329.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_7 PF12775.7 gi|126466220|ref|YP_001041329.1| - 0.14 11.7 0.2 9.7 5.7 0.1 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_13 PF13166.6 gi|126466220|ref|YP_001041329.1| - 0.17 10.5 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|126466220|ref|YP_001041329.1| - 0.27 10.6 1.8 5.7 6.2 0.2 2.2 2 0 0 2 2 2 0 KaiC SBP_bac_5 PF00496.22 gi|126466222|ref|YP_001041331.1| - 8.4e-12 44.7 3.7 4.5e-07 29.2 0.0 3.9 3 2 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Kelch_1 PF01344.25 gi|126466222|ref|YP_001041331.1| - 0.00098 18.7 0.1 0.014 14.9 0.0 2.5 2 0 0 2 2 2 1 Kelch motif RIFIN PF02009.16 gi|126466222|ref|YP_001041331.1| - 0.0017 18.3 7.1 0.0027 17.6 7.1 1.3 1 0 0 1 1 1 1 Rifin PsbJ PF01788.17 gi|126466222|ref|YP_001041331.1| - 0.049 13.5 0.0 0.18 11.7 0.0 2.0 1 0 0 1 1 1 0 PsbJ Stevor PF17410.2 gi|126466222|ref|YP_001041331.1| - 0.099 12.2 3.1 0.21 11.1 3.1 1.6 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Gemini_mov PF01708.16 gi|126466222|ref|YP_001041331.1| - 0.1 12.4 0.4 0.29 10.9 0.4 1.8 1 0 0 1 1 1 0 Geminivirus putative movement protein DUF485 PF04341.12 gi|126466222|ref|YP_001041331.1| - 0.13 12.2 2.3 0.4 10.7 2.3 1.8 1 0 0 1 1 1 0 Protein of unknown function, DUF485 DUF4064 PF13273.6 gi|126466222|ref|YP_001041331.1| - 0.66 10.3 6.0 0.094 13.0 1.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) Phage_holin_2_3 PF16080.5 gi|126466222|ref|YP_001041331.1| - 0.77 9.6 7.6 0.15 11.8 2.9 2.2 2 0 0 2 2 2 0 Bacteriophage holin family HP1 Pex14_N PF04695.13 gi|126466222|ref|YP_001041331.1| - 6.2 7.5 17.0 21 5.8 17.0 1.8 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region BPD_transp_1 PF00528.22 gi|126466223|ref|YP_001041332.1| - 2.7e-35 121.8 16.7 2.7e-35 121.8 16.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component LapA_dom PF06305.11 gi|126466223|ref|YP_001041332.1| - 0.92 9.4 9.1 0.34 10.8 0.6 3.4 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain BPD_transp_1 PF00528.22 gi|126466224|ref|YP_001041333.1| - 6.9e-25 87.9 15.5 6.9e-25 87.9 15.5 2.0 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|126466224|ref|YP_001041333.1| - 3.5e-05 23.7 3.4 4.1e-05 23.5 0.5 2.7 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF3989 PF13150.6 gi|126466224|ref|YP_001041333.1| - 0.15 11.8 0.1 15 5.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3989) ACP_syn_III_C PF08541.10 gi|126466225|ref|YP_001041334.1| - 3.5e-11 43.1 0.0 2.6e-10 40.3 0.0 2.3 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|126466225|ref|YP_001041334.1| - 1.6e-06 27.7 0.1 5.1e-06 26.0 0.3 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|126466225|ref|YP_001041334.1| - 0.00017 21.4 0.7 0.00046 20.0 0.3 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|126466225|ref|YP_001041334.1| - 0.002 17.8 0.0 0.25 11.0 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal DUF35_N PF12172.8 gi|126466226|ref|YP_001041335.1| - 2e-11 43.5 1.2 3e-11 43.0 1.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|126466226|ref|YP_001041335.1| - 9.8e-10 38.3 0.0 1.3e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DZR PF12773.7 gi|126466226|ref|YP_001041335.1| - 0.0087 16.1 0.4 0.013 15.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|126466226|ref|YP_001041335.1| - 0.012 15.3 4.3 0.021 14.5 4.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Methyltransf_13 PF08421.11 gi|126466226|ref|YP_001041335.1| - 0.022 15.0 0.1 8.3 6.7 0.0 2.4 2 0 0 2 2 2 0 Putative zinc binding domain zf-RanBP PF00641.18 gi|126466226|ref|YP_001041335.1| - 0.072 12.4 0.7 0.096 12.0 0.7 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others HypA PF01155.19 gi|126466226|ref|YP_001041335.1| - 0.37 10.8 1.5 0.35 10.9 0.4 1.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CCHC PF00098.23 gi|126466226|ref|YP_001041335.1| - 0.94 9.7 4.7 8.4 6.7 0.5 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-BED PF02892.15 gi|126466226|ref|YP_001041335.1| - 0.96 9.5 4.0 17 5.5 0.4 2.3 2 0 0 2 2 2 0 BED zinc finger zf-ribbon_3 PF13248.6 gi|126466226|ref|YP_001041335.1| - 1 8.9 5.0 3.1 7.4 5.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain HMG-CoA_red PF00368.18 gi|126466227|ref|YP_001041336.1| - 1.9e-09 37.1 0.4 2.7e-07 29.9 0.0 2.2 2 0 0 2 2 2 2 Hydroxymethylglutaryl-coenzyme A reductase Radical_SAM PF04055.21 gi|126466228|ref|YP_001041337.1| - 1.6e-05 25.4 0.0 5.5e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|126466228|ref|YP_001041337.1| - 2.6e-05 24.3 0.0 5.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Cnn_1N PF07989.11 gi|126466228|ref|YP_001041337.1| - 0.38 11.0 1.9 0.77 10.0 1.9 1.5 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 Aminotran_1_2 PF00155.21 gi|126466229|ref|YP_001041338.1| - 1.4e-40 139.6 0.0 1.7e-40 139.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|126466229|ref|YP_001041338.1| - 6.3e-08 31.8 0.0 8.9e-08 31.3 0.0 1.3 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.19 gi|126466229|ref|YP_001041338.1| - 0.0002 20.5 0.0 0.00027 20.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|126466229|ref|YP_001041338.1| - 0.0067 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|126466229|ref|YP_001041338.1| - 0.037 13.3 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF4603 PF15376.6 gi|126466229|ref|YP_001041338.1| - 0.11 9.9 0.0 0.14 9.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4603) HTH_3 PF01381.22 gi|126466231|ref|YP_001041340.1| - 5.3e-07 29.6 0.2 1.4e-06 28.2 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix HTH_11 PF08279.12 gi|126466231|ref|YP_001041340.1| - 2e-05 24.4 1.3 3.5e-05 23.7 0.2 2.0 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|126466231|ref|YP_001041340.1| - 0.00014 21.9 0.1 0.00029 20.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|126466231|ref|YP_001041340.1| - 0.00025 20.4 0.1 0.00046 19.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|126466231|ref|YP_001041340.1| - 0.00031 20.4 1.4 0.00061 19.5 0.4 1.8 2 0 0 2 2 2 1 Homeodomain-like domain MerR PF00376.23 gi|126466231|ref|YP_001041340.1| - 0.0011 18.7 1.3 0.011 15.5 0.2 2.6 2 0 0 2 2 2 1 MerR family regulatory protein HTH_50 PF18024.1 gi|126466231|ref|YP_001041340.1| - 0.0013 18.3 3.2 0.0013 18.3 0.1 2.6 3 1 0 3 3 3 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|126466231|ref|YP_001041340.1| - 0.0044 17.1 0.4 0.0095 16.1 0.3 1.8 1 1 0 1 1 1 1 Trp repressor protein Sigma70_r4_2 PF08281.12 gi|126466231|ref|YP_001041340.1| - 0.0081 15.8 0.1 0.027 14.2 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Linker_histone PF00538.19 gi|126466231|ref|YP_001041340.1| - 0.0095 16.3 0.1 0.031 14.7 0.0 1.8 1 1 0 1 1 1 1 linker histone H1 and H5 family HTH_AsnC-type PF13404.6 gi|126466231|ref|YP_001041340.1| - 0.01 15.7 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|126466231|ref|YP_001041340.1| - 0.011 15.3 0.0 0.035 13.6 0.0 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|126466231|ref|YP_001041340.1| - 0.011 15.5 0.4 0.065 13.0 0.0 2.2 2 1 0 2 2 2 0 HTH DNA binding domain HTH_31 PF13560.6 gi|126466231|ref|YP_001041340.1| - 0.012 15.9 0.1 0.024 15.0 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|126466231|ref|YP_001041340.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT UPF0122 PF04297.14 gi|126466231|ref|YP_001041340.1| - 0.013 15.8 1.3 0.021 15.0 1.2 1.5 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_29 PF13551.6 gi|126466231|ref|YP_001041340.1| - 0.015 15.3 0.1 0.024 14.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_17 PF12728.7 gi|126466231|ref|YP_001041340.1| - 0.024 14.8 0.0 0.066 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Fmp27_SW PF10305.9 gi|126466231|ref|YP_001041340.1| - 0.029 15.1 0.1 0.041 14.6 0.1 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Phage_CI_repr PF07022.13 gi|126466231|ref|YP_001041340.1| - 0.034 14.2 0.0 0.078 13.1 0.0 1.6 2 0 0 2 2 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_22 PF13309.6 gi|126466231|ref|YP_001041340.1| - 0.035 14.2 0.7 0.42 10.7 0.1 2.7 2 1 0 2 2 2 0 HTH domain LacI PF00356.21 gi|126466231|ref|YP_001041340.1| - 0.038 13.8 0.0 0.092 12.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family GntR PF00392.21 gi|126466231|ref|YP_001041340.1| - 0.042 13.5 0.4 0.22 11.2 0.0 2.3 3 0 0 3 3 2 0 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 gi|126466231|ref|YP_001041340.1| - 0.042 13.8 2.2 0.36 10.9 0.1 2.7 2 2 1 3 3 3 0 Helix-turn-helix domain, rpiR family EutB PF06751.11 gi|126466231|ref|YP_001041340.1| - 0.059 12.2 0.1 0.06 12.2 0.1 1.0 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) CDPS PF16715.5 gi|126466231|ref|YP_001041340.1| - 0.061 13.0 0.0 0.068 12.8 0.0 1.2 1 1 0 1 1 1 0 Cyclodipeptide synthase HTH_DeoR PF08220.12 gi|126466231|ref|YP_001041340.1| - 0.064 13.0 0.3 0.18 11.5 0.1 2.0 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain NUMOD1 PF07453.13 gi|126466231|ref|YP_001041340.1| - 0.085 13.1 0.1 0.28 11.5 0.0 1.9 2 0 0 2 2 2 0 NUMOD1 domain HbrB PF08539.11 gi|126466233|ref|YP_001041342.1| - 0.092 12.7 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 HbrB-like dsrm PF00035.26 gi|126466234|ref|YP_001041343.1| - 0.05 14.3 0.2 0.066 13.9 0.2 1.2 1 0 0 1 1 1 0 Double-stranded RNA binding motif DUF2192 PF09958.9 gi|126466235|ref|YP_001041344.1| - 6.5e-91 303.9 5.1 7.3e-91 303.8 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) DEAD_assoc PF08494.11 gi|126466236|ref|YP_001041345.1| - 1.2e-58 198.0 0.0 2.9e-58 196.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|126466236|ref|YP_001041345.1| - 1e-29 103.5 0.1 1.5e-28 99.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126466236|ref|YP_001041345.1| - 5.8e-18 65.3 1.0 2.3e-17 63.3 0.7 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|126466236|ref|YP_001041345.1| - 1.5e-12 47.8 0.0 9.5e-11 42.0 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|126466236|ref|YP_001041345.1| - 0.012 16.0 0.0 0.12 12.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|126466236|ref|YP_001041345.1| - 0.015 15.7 4.8 2.9 8.3 1.2 3.7 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF4287 PF14117.6 gi|126466236|ref|YP_001041345.1| - 0.018 15.2 0.0 0.19 11.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) SNF2_N PF00176.23 gi|126466236|ref|YP_001041345.1| - 0.021 13.6 0.2 0.083 11.6 0.2 2.1 1 1 0 1 1 1 0 SNF2 family N-terminal domain Ploopntkinase1 PF18748.1 gi|126466236|ref|YP_001041345.1| - 0.027 14.0 0.0 0.083 12.4 0.0 1.7 1 1 0 1 1 1 0 P-loop Nucleotide Kinase1 AAA_7 PF12775.7 gi|126466236|ref|YP_001041345.1| - 0.16 11.5 0.0 0.46 10.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing dynein motor region Glyco_trans_2_3 PF13632.6 gi|126466237|ref|YP_001041346.1| - 4.4e-20 72.4 5.0 1.1e-19 71.1 5.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|126466237|ref|YP_001041346.1| - 7.1e-19 68.2 0.1 1.1e-18 67.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|126466237|ref|YP_001041346.1| - 2.2e-16 60.5 0.0 3e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|126466237|ref|YP_001041346.1| - 1.8e-08 34.0 0.0 2.8e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Bac_DnaA PF00308.18 gi|126466237|ref|YP_001041346.1| - 0.05 13.4 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein DUF3040 PF11239.8 gi|126466237|ref|YP_001041346.1| - 0.16 12.3 0.1 0.47 10.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) PmbA_TldD PF01523.16 gi|126466238|ref|YP_001041347.1| - 5.2e-58 197.1 0.1 7.2e-58 196.6 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|126466239|ref|YP_001041348.1| - 9.2e-56 189.7 0.1 9.7e-54 183.1 0.1 2.0 2 0 0 2 2 2 2 Putative modulator of DNA gyrase A1_Propeptide PF07966.12 gi|126466239|ref|YP_001041348.1| - 0.11 12.4 0.0 1.2 9.1 0.2 2.6 2 0 0 2 2 2 0 A1 Propeptide Lactamase_B_3 PF13483.6 gi|126466240|ref|YP_001041349.1| - 7.1e-42 143.1 0.9 8.6e-42 142.8 0.9 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|126466240|ref|YP_001041349.1| - 2.6e-11 43.4 2.0 2.2e-07 30.6 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain DUF2325 PF10087.9 gi|126466240|ref|YP_001041349.1| - 0.095 12.8 0.2 1.8 8.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) Lactamase_B PF00753.27 gi|126466240|ref|YP_001041349.1| - 0.11 12.5 4.3 9.5 6.2 0.0 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily PfkB PF00294.24 gi|126466242|ref|YP_001041351.1| - 3.4e-06 26.6 0.0 4.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase WRW PF10206.9 gi|126466242|ref|YP_001041351.1| - 0.092 13.1 0.1 20 5.6 0.0 3.1 3 0 0 3 3 3 0 Mitochondrial F1F0-ATP synthase, subunit f Thioredoxin_3 PF13192.6 gi|126466243|ref|YP_001041352.1| - 0.00023 21.2 0.0 0.00039 20.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain PIN_5 PF08745.11 gi|126466243|ref|YP_001041352.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 PINc domain ribonuclease tRNA-synt_2b PF00587.25 gi|126466244|ref|YP_001041353.1| - 4.3e-35 121.3 0.0 7.3e-35 120.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|126466244|ref|YP_001041353.1| - 3.3e-21 75.6 8.4 5.5e-21 74.8 8.4 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Nmad5 PF18757.1 gi|126466244|ref|YP_001041353.1| - 0.002 18.4 1.7 0.0038 17.5 1.7 1.3 1 0 0 1 1 1 1 Nucleotide modification associated domain 5 DUF2031 PF09592.10 gi|126466244|ref|YP_001041353.1| - 0.17 11.4 4.1 0.29 10.6 4.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) SpmSyn_N PF17950.1 gi|126466244|ref|YP_001041353.1| - 0.18 12.0 1.2 0.46 10.7 1.2 1.7 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase N -terminal APG6_N PF17675.1 gi|126466244|ref|YP_001041353.1| - 0.23 12.0 5.6 0.4 11.2 5.6 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region V_ATPase_I PF01496.19 gi|126466244|ref|YP_001041353.1| - 0.5 8.2 2.0 0.71 7.7 2.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Osmo_CC PF08946.10 gi|126466244|ref|YP_001041353.1| - 0.92 9.8 5.7 5.6 7.3 5.7 2.2 1 1 0 1 1 1 0 Osmosensory transporter coiled coil Med9 PF07544.13 gi|126466244|ref|YP_001041353.1| - 1.9 8.7 7.3 6.6 6.9 5.0 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 AAA_23 PF13476.6 gi|126466244|ref|YP_001041353.1| - 8.3 6.9 8.3 16 6.0 8.3 1.4 1 0 0 1 1 1 0 AAA domain FeS_assembly_P PF01883.19 gi|126466245|ref|YP_001041354.1| - 1.2e-16 60.6 0.1 1.5e-16 60.3 0.1 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein IF-2B PF01008.17 gi|126466247|ref|YP_001041356.1| - 3.4e-89 298.8 1.8 3.9e-89 298.6 1.8 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family IF-2B PF01008.17 gi|126466248|ref|YP_001041357.1| - 8.4e-54 182.7 0.0 1e-53 182.4 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family AAA_26 PF13500.6 gi|126466249|ref|YP_001041358.1| - 0.0021 17.9 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain TSC22 PF01166.18 gi|126466249|ref|YP_001041358.1| - 0.06 13.7 0.5 0.12 12.8 0.5 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family FAM76 PF16046.5 gi|126466250|ref|YP_001041359.1| - 0.008 15.6 0.5 0.012 15.0 0.5 1.1 1 0 0 1 1 1 1 FAM76 protein Filament PF00038.21 gi|126466250|ref|YP_001041359.1| - 0.0081 15.8 0.2 0.013 15.1 0.2 1.2 1 0 0 1 1 1 1 Intermediate filament protein UPF0242 PF06785.11 gi|126466250|ref|YP_001041359.1| - 0.0094 16.1 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus TetR_C_5 PF08360.11 gi|126466250|ref|YP_001041359.1| - 0.01 16.0 1.9 0.019 15.1 0.2 2.3 2 0 0 2 2 2 0 QacR-like protein, C-terminal region ATG16 PF08614.11 gi|126466250|ref|YP_001041359.1| - 0.029 14.6 1.3 0.045 14.0 1.3 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DegS PF05384.11 gi|126466250|ref|YP_001041359.1| - 0.074 12.5 1.1 0.14 11.7 1.1 1.3 1 0 0 1 1 1 0 Sensor protein DegS DivIVA PF05103.13 gi|126466250|ref|YP_001041359.1| - 0.079 13.1 3.1 2.3 8.3 0.7 2.3 1 1 1 2 2 2 0 DivIVA protein Snapin_Pallidin PF14712.6 gi|126466250|ref|YP_001041359.1| - 0.1 13.1 2.8 0.23 11.9 2.8 1.5 1 0 0 1 1 1 0 Snapin/Pallidin DASH_Dam1 PF08653.10 gi|126466250|ref|YP_001041359.1| - 0.12 12.2 0.4 0.39 10.5 0.4 2.0 1 0 0 1 1 1 0 DASH complex subunit Dam1 TMF_TATA_bd PF12325.8 gi|126466250|ref|YP_001041359.1| - 0.14 12.4 0.8 0.27 11.5 0.8 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding APG6_N PF17675.1 gi|126466250|ref|YP_001041359.1| - 0.15 12.6 0.2 0.28 11.7 0.2 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region Uso1_p115_C PF04871.13 gi|126466250|ref|YP_001041359.1| - 0.22 11.9 1.1 0.35 11.2 1.1 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region TMF_DNA_bd PF12329.8 gi|126466250|ref|YP_001041359.1| - 0.22 11.5 3.5 0.75 9.8 3.5 1.8 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding CENP-F_leu_zip PF10473.9 gi|126466250|ref|YP_001041359.1| - 0.23 11.5 0.9 0.38 10.8 0.9 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-H PF05837.12 gi|126466250|ref|YP_001041359.1| - 0.23 11.9 1.2 0.44 11.0 1.2 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) BST2 PF16716.5 gi|126466250|ref|YP_001041359.1| - 0.3 11.7 1.3 0.71 10.5 1.3 1.5 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 DUF4201 PF13870.6 gi|126466250|ref|YP_001041359.1| - 0.3 10.8 3.2 0.48 10.1 3.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF4763 PF15960.5 gi|126466250|ref|YP_001041359.1| - 0.96 8.7 2.9 1.6 8.0 2.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) FlxA PF14282.6 gi|126466250|ref|YP_001041359.1| - 1.4 8.9 6.1 2.6 8.1 6.1 1.3 1 0 0 1 1 1 0 FlxA-like protein Csm1_N PF18504.1 gi|126466250|ref|YP_001041359.1| - 1.9 8.9 5.7 6.7 7.1 1.1 2.5 1 1 1 2 2 2 0 Csm1 N-terminal domain Baculo_PEP_C PF04513.12 gi|126466250|ref|YP_001041359.1| - 2.8 8.0 13.4 0.046 13.8 4.0 2.7 3 0 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZapB PF06005.12 gi|126466250|ref|YP_001041359.1| - 6.5 7.3 8.1 1.9 9.0 4.8 1.8 2 0 0 2 2 2 0 Cell division protein ZapB YdjM PF04307.14 gi|126466251|ref|YP_001041360.1| - 8e-14 51.3 7.6 3.7e-13 49.1 7.6 1.8 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Phage_holin_3_3 PF16083.5 gi|126466251|ref|YP_001041360.1| - 0.00086 19.4 0.3 0.0027 17.8 0.3 1.9 1 1 0 1 1 1 1 LydA holin phage, holin superfamily III ThrE PF06738.12 gi|126466251|ref|YP_001041360.1| - 0.0014 18.0 0.3 0.013 14.9 0.3 2.0 1 1 1 2 2 2 1 Putative threonine/serine exporter MRAP PF15183.6 gi|126466251|ref|YP_001041360.1| - 0.63 10.0 6.2 0.086 12.8 1.3 2.0 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family DUF1743 PF08489.11 gi|126466252|ref|YP_001041361.1| - 1.9e-34 118.2 0.1 3.1e-34 117.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|126466252|ref|YP_001041361.1| - 3.7e-07 30.0 0.1 6.7e-07 29.2 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|126466252|ref|YP_001041361.1| - 0.0019 18.1 2.4 0.0041 17.0 2.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TPR_12 PF13424.6 gi|126466252|ref|YP_001041361.1| - 0.0042 17.3 0.1 0.0087 16.3 0.1 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat DZR PF12773.7 gi|126466252|ref|YP_001041361.1| - 0.0045 17.0 0.7 0.0078 16.2 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|126466252|ref|YP_001041361.1| - 0.013 15.1 6.4 0.022 14.4 6.4 1.3 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain MCM_OB PF17207.3 gi|126466252|ref|YP_001041361.1| - 0.044 13.6 0.5 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 MCM OB domain TPR_10 PF13374.6 gi|126466252|ref|YP_001041361.1| - 0.055 13.4 0.6 0.17 11.8 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat HypA PF01155.19 gi|126466252|ref|YP_001041361.1| - 0.084 12.9 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|126466252|ref|YP_001041361.1| - 0.13 11.7 3.2 0.26 10.7 3.2 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|126466252|ref|YP_001041361.1| - 0.13 12.0 3.7 7.9 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TPR_2 PF07719.17 gi|126466252|ref|YP_001041361.1| - 0.2 11.9 1.2 1.2 9.4 1.1 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat zf_UBZ PF18439.1 gi|126466252|ref|YP_001041361.1| - 0.6 9.7 2.0 10 5.8 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|126466252|ref|YP_001041361.1| - 0.81 9.7 7.5 3.7 7.6 7.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HscB_4_cys PF18256.1 gi|126466252|ref|YP_001041361.1| - 0.82 9.5 5.7 1.5 8.7 5.7 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Zn_ribbon_recom PF13408.6 gi|126466252|ref|YP_001041361.1| - 1.8 9.2 6.7 5.6 7.6 6.7 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.6 gi|126466252|ref|YP_001041361.1| - 2.2 7.8 6.9 9.6 5.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|126466252|ref|YP_001041361.1| - 2.5 7.7 4.1 1.8 8.2 0.7 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger TPR_1 PF00515.28 gi|126466252|ref|YP_001041361.1| - 2.8 7.9 4.8 2.7 8.0 0.8 2.6 2 1 1 3 3 2 0 Tetratricopeptide repeat zf-HIT PF04438.16 gi|126466252|ref|YP_001041361.1| - 5 7.1 9.1 4 7.4 1.7 2.3 2 0 0 2 2 2 0 HIT zinc finger UPF0547 PF10571.9 gi|126466252|ref|YP_001041361.1| - 5.9 7.1 5.6 31 4.7 5.6 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_ribbon_SprT PF17283.2 gi|126466252|ref|YP_001041361.1| - 6.4 6.8 7.2 16 5.5 7.2 1.7 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zf-ISL3 PF14690.6 gi|126466252|ref|YP_001041361.1| - 6.4 7.5 7.8 3.8 8.3 1.3 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|126466252|ref|YP_001041361.1| - 7.1 6.8 6.4 11 6.2 0.4 2.3 1 1 0 2 2 2 0 Zinc ribbon domain DS PF01916.17 gi|126466253|ref|YP_001041362.1| - 9.8e-100 333.5 0.0 1.1e-99 333.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Peptidase_S66 PF02016.15 gi|126466253|ref|YP_001041362.1| - 0.023 14.8 0.0 3.7 7.7 0.0 2.3 2 0 0 2 2 2 0 LD-carboxypeptidase N-terminal domain Clr5 PF14420.6 gi|126466253|ref|YP_001041362.1| - 0.032 14.4 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 Clr5 domain Meth_synt_1 PF08267.12 gi|126466253|ref|YP_001041362.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Cobalamin-independent synthase, N-terminal domain Mrr_cat PF04471.12 gi|126466254|ref|YP_001041363.1| - 0.0015 18.5 0.0 0.0027 17.7 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease HTH_11 PF08279.12 gi|126466254|ref|YP_001041363.1| - 0.0032 17.4 0.3 0.0099 15.8 0.3 1.9 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|126466254|ref|YP_001041363.1| - 0.023 14.1 0.0 0.61 9.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|126466254|ref|YP_001041363.1| - 0.032 14.1 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|126466254|ref|YP_001041363.1| - 0.04 14.0 0.5 0.18 11.9 0.2 2.2 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF4372 PF14294.6 gi|126466254|ref|YP_001041363.1| - 0.075 13.2 1.8 0.92 9.7 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4372) DnaB_bind PF10410.9 gi|126466254|ref|YP_001041363.1| - 0.15 12.3 0.4 8.8 6.6 0.1 2.7 3 0 0 3 3 3 0 DnaB-helicase binding domain of primase Mga PF05043.13 gi|126466254|ref|YP_001041363.1| - 0.59 10.8 4.0 1.1 9.9 0.2 2.9 3 0 0 3 3 3 0 Mga helix-turn-helix domain PCNA_N PF00705.18 gi|126466255|ref|YP_001041364.1| - 3.3e-11 43.0 0.1 7.8e-11 41.8 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|126466255|ref|YP_001041364.1| - 7.8e-07 29.3 0.3 4.6e-06 26.8 0.0 2.2 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|126466255|ref|YP_001041364.1| - 0.02 14.0 0.2 16 4.5 0.0 3.0 2 1 1 3 3 3 0 Repair protein Rad1/Rec1/Rad17 KH_5 PF13184.6 gi|126466255|ref|YP_001041364.1| - 0.021 14.9 0.2 0.069 13.3 0.1 2.0 2 0 0 2 2 2 0 NusA-like KH domain Rad9 PF04139.13 gi|126466255|ref|YP_001041364.1| - 0.028 13.9 0.0 0.055 12.9 0.0 1.6 1 1 0 1 1 1 0 Rad9 Phosphodiest PF01663.22 gi|126466256|ref|YP_001041365.1| - 1.1e-43 150.2 2.2 1.1e-22 81.2 0.2 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase FeS_assembly_P PF01883.19 gi|126466256|ref|YP_001041365.1| - 0.0092 16.1 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Sulfatase PF00884.23 gi|126466256|ref|YP_001041365.1| - 0.0094 15.4 0.1 0.0094 15.4 0.1 2.9 3 1 1 4 4 4 1 Sulfatase Metalloenzyme PF01676.18 gi|126466256|ref|YP_001041365.1| - 0.011 15.1 0.0 0.011 15.1 0.0 1.7 2 0 0 2 2 2 0 Metalloenzyme superfamily RIFIN PF02009.16 gi|126466256|ref|YP_001041365.1| - 0.057 13.3 8.8 0.089 12.7 8.8 1.2 1 0 0 1 1 1 0 Rifin VCBS PF13517.6 gi|126466256|ref|YP_001041365.1| - 0.067 13.8 2.0 0.12 13.0 0.5 2.3 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DUF229 PF02995.17 gi|126466256|ref|YP_001041365.1| - 0.11 11.1 0.0 0.11 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF229) DUF5534 PF17686.1 gi|126466256|ref|YP_001041365.1| - 2 8.6 5.6 3.9 7.7 5.6 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5534) PhoH PF02562.16 gi|126466258|ref|YP_001041367.1| - 5.8e-49 166.3 0.0 7.8e-49 165.9 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|126466258|ref|YP_001041367.1| - 1.9e-07 30.8 0.9 9.5e-07 28.6 0.4 2.2 1 1 1 2 2 2 1 KH domain KH_1 PF00013.29 gi|126466258|ref|YP_001041367.1| - 4e-05 23.4 0.1 0.0001 22.0 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|126466258|ref|YP_001041367.1| - 8.8e-05 22.5 0.1 0.0053 16.8 0.0 2.4 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|126466258|ref|YP_001041367.1| - 0.0086 15.9 0.2 0.035 14.0 0.2 2.1 2 0 0 2 2 2 1 KH domain IstB_IS21 PF01695.17 gi|126466258|ref|YP_001041367.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein tRNA-synt_2 PF00152.20 gi|126466260|ref|YP_001041369.1| - 1.8e-90 303.2 0.0 2.3e-90 302.9 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|126466260|ref|YP_001041369.1| - 1.7e-08 34.3 1.0 2.9e-08 33.6 1.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|126466260|ref|YP_001041369.1| - 0.0063 16.0 0.1 0.092 12.2 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HhH-GPD PF00730.25 gi|126466261|ref|YP_001041370.1| - 4.7e-23 81.7 0.0 6.2e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|126466261|ref|YP_001041370.1| - 3.6e-05 23.9 8.1 6.2e-05 23.2 8.1 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|126466261|ref|YP_001041370.1| - 0.0023 18.5 0.2 4.1 8.1 0.0 2.5 2 1 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.23 gi|126466261|ref|YP_001041370.1| - 0.0048 16.7 0.0 0.015 15.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF2400 PF09674.10 gi|126466261|ref|YP_001041370.1| - 0.079 12.9 0.0 0.21 11.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) Costars PF14705.6 gi|126466261|ref|YP_001041370.1| - 0.14 12.3 0.2 0.39 10.9 0.1 1.7 2 0 0 2 2 2 0 Costars DUF1803 PF08820.10 gi|126466261|ref|YP_001041370.1| - 0.16 12.0 0.9 2.9 8.0 0.1 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF1803) AGTRAP PF06396.11 gi|126466263|ref|YP_001041372.1| - 1 9.2 9.2 0.96 9.2 5.3 2.0 1 1 1 2 2 2 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Oxidored_molyb PF00174.19 gi|126466264|ref|YP_001041373.1| - 5.8e-38 130.2 0.0 8.7e-38 129.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain MFS_1 PF07690.16 gi|126466265|ref|YP_001041374.1| - 7.1e-15 54.8 39.1 7.1e-15 54.8 39.1 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Met_10 PF02475.16 gi|126466266|ref|YP_001041375.1| - 1e-58 198.4 0.0 1.7e-58 197.7 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|126466266|ref|YP_001041375.1| - 7.8e-07 28.6 0.0 1.1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|126466266|ref|YP_001041375.1| - 6.5e-05 22.6 0.0 0.0001 21.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|126466266|ref|YP_001041375.1| - 8e-05 22.2 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|126466266|ref|YP_001041375.1| - 0.00024 21.1 0.1 0.00062 19.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|126466266|ref|YP_001041375.1| - 0.016 14.8 0.0 0.04 13.5 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|126466266|ref|YP_001041375.1| - 0.03 14.1 0.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|126466266|ref|YP_001041375.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase Acetyltransf_1 PF00583.25 gi|126466267|ref|YP_001041376.1| - 4.2e-18 65.7 0.2 5.6e-18 65.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|126466267|ref|YP_001041376.1| - 1.1e-13 51.3 0.4 1.8e-13 50.7 0.4 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|126466267|ref|YP_001041376.1| - 1.8e-11 44.1 0.1 2.9e-11 43.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|126466267|ref|YP_001041376.1| - 1.1e-10 41.3 0.0 1.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|126466267|ref|YP_001041376.1| - 2.4e-06 27.7 1.0 5.1e-06 26.7 0.3 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|126466267|ref|YP_001041376.1| - 9.1e-06 25.8 0.4 4.2e-05 23.6 0.1 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|126466267|ref|YP_001041376.1| - 2.6e-05 23.9 0.4 6.7e-05 22.6 0.4 1.7 1 1 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_3 PF13302.7 gi|126466267|ref|YP_001041376.1| - 0.0002 22.0 0.0 0.00028 21.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|126466267|ref|YP_001041376.1| - 0.00094 18.9 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|126466267|ref|YP_001041376.1| - 0.0037 16.7 1.2 0.0053 16.3 1.2 1.4 1 1 0 1 1 1 1 Putative acetyl-transferase DFP PF04127.15 gi|126466268|ref|YP_001041377.1| - 9.9e-52 175.5 0.0 3.3e-51 173.8 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|126466268|ref|YP_001041377.1| - 1.2e-39 135.6 0.2 2.5e-39 134.6 0.2 1.5 1 0 0 1 1 1 1 Flavoprotein Ofd1_CTDD PF10637.9 gi|126466268|ref|YP_001041377.1| - 0.024 14.0 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Oxoglutarate and iron-dependent oxygenase degradation C-term DUF1254 PF06863.12 gi|126466268|ref|YP_001041377.1| - 0.037 14.1 0.0 0.09 12.8 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1254) PPS_PS PF02006.16 gi|126466269|ref|YP_001041378.1| - 5.5e-76 254.0 1.2 6.8e-76 253.7 1.2 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF4911 PF16256.5 gi|126466269|ref|YP_001041378.1| - 0.054 13.5 0.1 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) HicB_lk_antitox PF15919.5 gi|126466269|ref|YP_001041378.1| - 0.065 13.4 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system GHMP_kinases_N PF00288.26 gi|126466270|ref|YP_001041379.1| - 0.029 14.6 0.2 0.054 13.7 0.2 1.4 1 0 0 1 1 1 0 GHMP kinases N terminal domain Gcw_chp PF09694.10 gi|126466270|ref|YP_001041379.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (Gcw_chp) Pantoate_transf PF02548.15 gi|126466271|ref|YP_001041380.1| - 5.7e-109 363.5 0.2 6.4e-109 363.3 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|126466271|ref|YP_001041380.1| - 1.2e-06 28.2 2.6 0.00012 21.7 0.2 2.9 1 1 2 3 3 3 2 Phosphoenolpyruvate phosphomutase ComA PF02679.15 gi|126466271|ref|YP_001041380.1| - 0.23 10.9 2.0 1.4 8.3 0.1 2.3 2 1 1 3 3 3 0 (2R)-phospho-3-sulfolactate synthase (ComA) ApbA_C PF08546.11 gi|126466272|ref|YP_001041381.1| - 1.7e-25 89.6 0.1 2.9e-25 88.9 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|126466272|ref|YP_001041381.1| - 1.7e-20 73.2 0.1 2.7e-20 72.5 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|126466272|ref|YP_001041381.1| - 0.00057 20.4 0.0 0.0012 19.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Methyltransf_7 PF03492.15 gi|126466272|ref|YP_001041381.1| - 0.095 11.9 0.4 1.6 7.8 0.1 2.1 2 0 0 2 2 2 0 SAM dependent carboxyl methyltransferase ThiP_synth PF10120.9 gi|126466273|ref|YP_001041382.1| - 8.3e-46 155.6 0.0 1.3e-45 155.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|126466273|ref|YP_001041382.1| - 7.1e-05 22.5 0.0 0.00037 20.2 0.0 2.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_24 PF13412.6 gi|126466273|ref|YP_001041382.1| - 0.017 14.7 0.0 0.3 10.7 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|126466273|ref|YP_001041382.1| - 0.022 14.7 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|126466273|ref|YP_001041382.1| - 0.024 14.7 0.0 0.069 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|126466273|ref|YP_001041382.1| - 0.033 13.9 0.0 0.11 12.2 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|126466273|ref|YP_001041382.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|126466273|ref|YP_001041382.1| - 0.11 12.3 0.0 0.31 10.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|126466273|ref|YP_001041382.1| - 0.13 12.1 0.0 0.42 10.5 0.0 1.8 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|126466273|ref|YP_001041382.1| - 0.16 12.0 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix ABC_tran PF00005.27 gi|126466275|ref|YP_001041384.1| - 9.3e-32 110.4 0.0 1.5e-31 109.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126466275|ref|YP_001041384.1| - 8.8e-14 52.0 0.3 4.2e-06 26.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126466275|ref|YP_001041384.1| - 1.1e-05 25.1 0.2 0.035 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126466275|ref|YP_001041384.1| - 0.0033 17.2 0.1 0.0081 15.9 0.0 1.6 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|126466275|ref|YP_001041384.1| - 0.0069 16.1 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126466275|ref|YP_001041384.1| - 0.0086 16.6 3.7 0.0091 16.5 2.1 1.7 1 1 1 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|126466275|ref|YP_001041384.1| - 0.019 13.6 0.0 0.99 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|126466275|ref|YP_001041384.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|126466275|ref|YP_001041384.1| - 0.028 14.0 0.1 0.065 12.8 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|126466275|ref|YP_001041384.1| - 0.035 14.5 0.1 0.083 13.3 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|126466275|ref|YP_001041384.1| - 0.051 13.3 0.0 0.095 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.21 gi|126466275|ref|YP_001041384.1| - 0.11 12.4 0.2 3.7 7.5 0.0 2.2 2 0 0 2 2 2 0 MutS domain V ABC2_membrane_3 PF12698.7 gi|126466276|ref|YP_001041385.1| - 4.5e-21 75.4 28.4 5.2e-21 75.1 28.4 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|126466276|ref|YP_001041385.1| - 3.8e-15 55.9 21.6 6.5e-15 55.2 21.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein HTH_45 PF14947.6 gi|126466277|ref|YP_001041386.1| - 1e-10 41.4 1.7 2.6e-10 40.1 1.7 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|126466277|ref|YP_001041386.1| - 5.7e-06 25.8 0.5 1.4e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|126466277|ref|YP_001041386.1| - 0.00025 20.9 0.0 0.00045 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|126466277|ref|YP_001041386.1| - 0.00051 19.8 0.0 0.00086 19.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|126466277|ref|YP_001041386.1| - 0.00069 19.5 0.3 0.0014 18.4 0.3 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|126466277|ref|YP_001041386.1| - 0.00078 19.2 0.3 0.0012 18.6 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|126466277|ref|YP_001041386.1| - 0.0051 16.8 0.0 0.009 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|126466277|ref|YP_001041386.1| - 0.0077 16.6 0.1 0.017 15.5 0.1 1.6 1 0 0 1 1 1 1 FaeA-like protein Phage_rep_org_N PF09681.10 gi|126466277|ref|YP_001041386.1| - 0.0082 16.1 0.1 0.017 15.1 0.1 1.5 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_36 PF13730.6 gi|126466277|ref|YP_001041386.1| - 0.0087 16.0 0.0 0.019 14.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TnsD PF15978.5 gi|126466277|ref|YP_001041386.1| - 0.016 14.3 0.7 0.024 13.6 0.5 1.3 1 1 0 1 1 1 0 Tn7-like transposition protein D Mrr_N PF14338.6 gi|126466277|ref|YP_001041386.1| - 0.023 14.8 0.2 0.29 11.3 0.1 2.3 2 0 0 2 2 2 0 Mrr N-terminal domain GntR PF00392.21 gi|126466277|ref|YP_001041386.1| - 0.024 14.3 0.1 0.093 12.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|126466277|ref|YP_001041386.1| - 0.025 14.5 0.2 0.055 13.4 0.2 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain AAA_5 PF07728.14 gi|126466277|ref|YP_001041386.1| - 0.038 14.0 0.0 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) HTH_Crp_2 PF13545.6 gi|126466277|ref|YP_001041386.1| - 0.047 13.7 0.1 0.15 12.0 0.0 1.8 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|126466277|ref|YP_001041386.1| - 0.049 13.5 0.1 0.46 10.3 0.0 2.5 2 1 1 3 3 3 0 Homeodomain-like domain HTH_27 PF13463.6 gi|126466277|ref|YP_001041386.1| - 0.052 14.1 0.1 0.27 11.8 0.1 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|126466277|ref|YP_001041386.1| - 0.052 14.0 0.9 0.17 12.4 0.3 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|126466277|ref|YP_001041386.1| - 0.054 13.7 0.1 0.13 12.5 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|126466277|ref|YP_001041386.1| - 0.062 13.3 0.5 0.22 11.5 0.1 2.2 2 0 0 2 2 2 0 HTH domain RNA_pol_Rpc34 PF05158.12 gi|126466277|ref|YP_001041386.1| - 0.063 12.6 0.2 0.091 12.1 0.2 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit LexA_DNA_bind PF01726.16 gi|126466277|ref|YP_001041386.1| - 0.084 12.7 0.1 0.29 10.9 0.1 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_29 PF13551.6 gi|126466277|ref|YP_001041386.1| - 0.086 12.9 0.6 0.81 9.8 0.0 2.6 2 1 1 3 3 2 0 Winged helix-turn helix Rrf2 PF02082.20 gi|126466277|ref|YP_001041386.1| - 0.091 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|126466277|ref|YP_001041386.1| - 0.14 12.1 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 MarR family MerR-DNA-bind PF09278.11 gi|126466277|ref|YP_001041386.1| - 0.17 12.5 1.1 0.34 11.5 0.6 1.7 2 0 0 2 2 1 0 MerR, DNA binding DUF5310 PF17237.2 gi|126466277|ref|YP_001041386.1| - 0.19 11.6 0.2 0.31 10.9 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5310) Glyco_hydro_57 PF03065.15 gi|126466279|ref|YP_001041388.1| - 7.3e-66 222.6 2.1 1.3e-65 221.8 2.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 MFS_1 PF07690.16 gi|126466280|ref|YP_001041389.1| - 1.3e-52 178.9 34.1 1.4e-44 152.5 29.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|126466280|ref|YP_001041389.1| - 1.8e-14 53.5 23.2 6.8e-13 48.3 9.8 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|126466280|ref|YP_001041389.1| - 1.6e-06 27.3 25.5 3e-05 23.1 12.2 3.3 2 2 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|126466280|ref|YP_001041389.1| - 0.0048 15.3 9.6 0.0084 14.5 1.7 2.2 1 1 1 2 2 2 2 Transmembrane secretion effector OATP PF03137.20 gi|126466280|ref|YP_001041389.1| - 0.18 10.1 25.6 0.28 9.4 2.1 4.0 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Glyco_hydro_1 PF00232.18 gi|126466281|ref|YP_001041390.1| - 5.8e-88 295.3 14.1 1.4e-86 290.7 14.1 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|126466281|ref|YP_001041390.1| - 1.7e-07 31.0 1.0 1.7e-07 31.0 1.0 1.7 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.8 gi|126466281|ref|YP_001041390.1| - 0.008 15.8 2.1 0.012 15.2 0.1 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core DUF4874 PF16173.5 gi|126466281|ref|YP_001041390.1| - 0.031 14.0 0.8 0.066 12.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4874) Radical_SAM PF04055.21 gi|126466281|ref|YP_001041390.1| - 0.043 14.2 0.1 0.39 11.1 0.0 2.2 2 1 0 2 2 2 0 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|126466281|ref|YP_001041390.1| - 0.089 12.2 0.0 0.54 9.7 0.0 1.9 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Glyco_hydro_57 PF03065.15 gi|126466282|ref|YP_001041391.1| - 2.3e-38 132.2 0.3 4.3e-38 131.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.11 gi|126466282|ref|YP_001041391.1| - 1.7e-36 124.4 4.0 3.5e-36 123.3 4.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) DUF1926 PF09095.11 gi|126466282|ref|YP_001041391.1| - 2.1e-27 96.5 0.0 1.9e-13 50.7 0.2 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF1926) Glyco_hydro_38N PF01074.22 gi|126466282|ref|YP_001041391.1| - 1.2e-05 24.9 0.1 2.1e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_transf_5 PF08323.11 gi|126466283|ref|YP_001041392.1| - 1.8e-31 109.7 0.2 5e-31 108.3 0.0 1.7 2 0 0 2 2 2 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|126466283|ref|YP_001041392.1| - 2.2e-23 82.6 0.0 1.1e-22 80.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|126466283|ref|YP_001041392.1| - 1.7e-19 70.6 0.0 3.1e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|126466283|ref|YP_001041392.1| - 8.6e-05 22.6 0.2 0.0016 18.4 0.2 2.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|126466283|ref|YP_001041392.1| - 0.046 13.7 0.6 0.57 10.2 0.0 2.8 3 0 0 3 3 3 0 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|126466283|ref|YP_001041392.1| - 0.05 14.0 0.0 0.21 12.0 0.0 2.1 1 1 1 2 2 2 0 Glycosyl transferases group 1 PqqD PF05402.12 gi|126466284|ref|YP_001041393.1| - 1.7e-11 44.2 0.0 2.5e-11 43.7 0.0 1.3 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF3283 PF11686.8 gi|126466284|ref|YP_001041393.1| - 0.0032 17.3 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3283) GerPC PF10737.9 gi|126466286|ref|YP_001041395.1| - 0.095 12.8 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Spore germination protein GerPC YidC_periplas PF14849.6 gi|126466287|ref|YP_001041396.1| - 2e-07 31.2 1.1 0.0022 17.9 0.2 3.0 2 1 1 3 3 3 2 YidC periplasmic domain Glyco_hydro_36N PF16875.5 gi|126466287|ref|YP_001041396.1| - 0.083 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 36 N-terminal domain DUF4229 PF14012.6 gi|126466287|ref|YP_001041396.1| - 1.7 8.8 5.4 19 5.4 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) FtsX PF02687.21 gi|126466288|ref|YP_001041397.1| - 7.9e-07 29.5 7.7 7.9e-07 29.5 7.7 4.9 3 1 0 4 4 4 1 FtsX-like permease family Peptidase_M28 PF04389.17 gi|126466288|ref|YP_001041397.1| - 1.6e-05 24.7 0.0 2.7e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 MacB_PCD PF12704.7 gi|126466288|ref|YP_001041397.1| - 0.00022 21.6 3.8 0.0004 20.8 1.8 2.4 2 0 0 2 2 2 1 MacB-like periplasmic core domain OPT PF03169.15 gi|126466290|ref|YP_001041399.1| - 2.3e-10 39.8 46.8 4.3e-08 32.3 6.5 3.6 1 1 0 2 2 2 2 OPT oligopeptide transporter protein Glyco_hydro_57 PF03065.15 gi|126466291|ref|YP_001041400.1| - 1.4e-25 90.2 8.3 1.2e-22 80.5 8.4 3.2 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 ASH PF15780.5 gi|126466291|ref|YP_001041400.1| - 0.076 13.2 1.0 0.19 11.9 1.0 1.6 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Transglut_C PF00927.22 gi|126466291|ref|YP_001041400.1| - 0.15 12.2 0.2 0.3 11.2 0.2 1.4 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain CARDB PF07705.11 gi|126466291|ref|YP_001041400.1| - 3 8.1 5.5 2 8.7 1.2 2.5 2 0 0 2 2 2 0 CARDB ABC_tran PF00005.27 gi|126466293|ref|YP_001041402.1| - 1.4e-34 119.5 0.0 2.7e-34 118.6 0.0 1.4 2 0 0 2 2 2 1 ABC transporter SMC_N PF02463.19 gi|126466293|ref|YP_001041402.1| - 1.6e-05 24.4 0.1 0.0071 15.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|126466293|ref|YP_001041402.1| - 0.00027 20.8 0.2 0.64 9.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system dNK PF01712.19 gi|126466293|ref|YP_001041402.1| - 0.0059 16.5 0.1 0.025 14.4 0.0 1.9 2 0 0 2 2 2 1 Deoxynucleoside kinase RsgA_GTPase PF03193.16 gi|126466293|ref|YP_001041402.1| - 0.0082 16.1 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|126466293|ref|YP_001041402.1| - 0.0092 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|126466293|ref|YP_001041402.1| - 0.019 15.5 0.2 0.037 14.5 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126466293|ref|YP_001041402.1| - 0.027 14.8 0.1 0.062 13.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|126466293|ref|YP_001041402.1| - 0.053 13.8 0.7 0.65 10.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|126466293|ref|YP_001041402.1| - 0.32 11.4 1.9 5.9 7.3 0.1 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|126466294|ref|YP_001041403.1| - 2.1e-32 112.5 0.0 3.6e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|126466294|ref|YP_001041403.1| - 0.00014 21.4 0.2 0.099 12.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|126466294|ref|YP_001041403.1| - 0.00053 19.7 0.1 0.0012 18.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|126466294|ref|YP_001041403.1| - 0.00054 19.7 0.0 0.012 15.3 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|126466294|ref|YP_001041403.1| - 0.0047 16.8 0.0 0.0082 16.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|126466294|ref|YP_001041403.1| - 0.0054 16.6 0.2 1.6 8.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|126466294|ref|YP_001041403.1| - 0.0092 16.4 0.5 3.9 7.9 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|126466294|ref|YP_001041403.1| - 0.0099 16.1 0.5 0.21 11.8 0.1 2.7 3 0 0 3 3 3 1 AAA domain T2SSE PF00437.20 gi|126466294|ref|YP_001041403.1| - 0.01 14.9 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|126466294|ref|YP_001041403.1| - 0.018 15.6 0.1 0.038 14.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126466294|ref|YP_001041403.1| - 0.049 14.0 0.0 0.09 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Polyoma_lg_T_C PF06431.11 gi|126466294|ref|YP_001041403.1| - 0.059 12.2 0.0 0.082 11.8 0.0 1.1 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus MMR_HSR1 PF01926.23 gi|126466294|ref|YP_001041403.1| - 0.13 12.4 0.3 0.67 10.1 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|126466294|ref|YP_001041403.1| - 0.13 12.6 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase LEH PF07858.12 gi|126466295|ref|YP_001041404.1| - 0.045 13.9 0.0 0.054 13.6 0.0 1.2 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain DUF521 PF04412.13 gi|126466295|ref|YP_001041404.1| - 0.069 11.8 0.0 0.084 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Glyco_hydro_57 PF03065.15 gi|126466296|ref|YP_001041405.1| - 1.6e-32 113.0 1.0 1.6e-32 113.0 1.0 2.7 2 1 0 3 3 3 2 Glycosyl hydrolase family 57 CHIPS PF11434.8 gi|126466296|ref|YP_001041405.1| - 0.11 12.3 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 Chemotaxis-inhibiting protein CHIPS LexA_DNA_bind PF01726.16 gi|126466298|ref|YP_001041407.1| - 1.3e-08 34.5 0.0 2.2e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|126466298|ref|YP_001041407.1| - 0.00027 20.8 0.0 0.00054 19.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|126466298|ref|YP_001041407.1| - 0.00047 20.0 0.3 0.0011 18.9 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|126466298|ref|YP_001041407.1| - 0.00049 20.1 0.0 0.00066 19.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|126466298|ref|YP_001041407.1| - 0.0025 17.7 0.1 0.0041 16.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|126466298|ref|YP_001041407.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|126466298|ref|YP_001041407.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|126466298|ref|YP_001041407.1| - 0.028 14.3 0.0 0.074 13.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|126466298|ref|YP_001041407.1| - 0.065 13.2 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain DHHA1 PF02272.19 gi|126466299|ref|YP_001041408.1| - 4e-05 24.0 0.3 0.00011 22.6 0.3 1.8 1 1 0 1 1 1 1 DHHA1 domain Peptidase_S8 PF00082.22 gi|126466300|ref|YP_001041409.1| - 5.2e-26 91.6 0.0 1.2e-25 90.4 0.0 1.6 1 1 0 1 1 1 1 Subtilase family OapA_N PF08525.11 gi|126466300|ref|YP_001041409.1| - 0.97 9.5 5.4 2.1 8.4 5.4 1.6 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif Sm_multidrug_ex PF06695.11 gi|126466301|ref|YP_001041410.1| - 5.8e-32 110.9 2.5 9e-32 110.3 2.5 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein DUF4239 PF14023.6 gi|126466301|ref|YP_001041410.1| - 0.093 12.4 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) VWA_CoxE PF05762.14 gi|126466304|ref|YP_001041413.1| - 1.3e-07 31.2 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|126466304|ref|YP_001041413.1| - 3.9e-06 27.2 0.1 9.7e-06 25.9 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|126466304|ref|YP_001041413.1| - 9.2e-05 23.0 0.0 0.0005 20.7 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain Imm2 PF14426.6 gi|126466304|ref|YP_001041413.1| - 0.065 13.3 0.4 0.16 12.1 0.4 1.6 1 0 0 1 1 1 0 Immunity protein Imm2 AAA_5 PF07728.14 gi|126466305|ref|YP_001041414.1| - 7.5e-29 100.5 0.2 8.1e-28 97.1 0.0 2.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|126466305|ref|YP_001041414.1| - 1.5e-07 31.2 0.1 3.1e-07 30.2 0.1 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_3 PF07726.11 gi|126466305|ref|YP_001041414.1| - 5.5e-06 26.3 0.0 1.1e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|126466305|ref|YP_001041414.1| - 1.7e-05 25.2 0.1 0.00014 22.3 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|126466305|ref|YP_001041414.1| - 6.1e-05 23.5 0.6 0.00019 21.9 0.0 2.0 2 2 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|126466305|ref|YP_001041414.1| - 0.00022 20.7 0.0 0.00056 19.3 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|126466305|ref|YP_001041414.1| - 0.0037 17.5 0.1 0.016 15.4 0.0 2.2 2 1 0 2 2 2 1 AAA domain MCM PF00493.23 gi|126466305|ref|YP_001041414.1| - 0.004 16.3 0.0 0.019 14.1 0.0 2.0 2 0 0 2 2 2 1 MCM P-loop domain RuvB_N PF05496.12 gi|126466305|ref|YP_001041414.1| - 0.031 14.0 2.4 0.14 11.9 0.1 2.8 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|126466305|ref|YP_001041414.1| - 0.039 13.6 0.0 0.27 10.9 0.0 2.3 1 1 0 1 1 1 0 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|126466305|ref|YP_001041414.1| - 0.076 12.9 0.5 11 5.9 0.0 3.1 3 0 0 3 3 3 0 NTPase AAA_7 PF12775.7 gi|126466305|ref|YP_001041414.1| - 0.088 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|126466305|ref|YP_001041414.1| - 0.11 12.2 0.6 0.61 9.8 0.0 2.2 2 1 0 2 2 2 0 AAA domain MtrF PF09472.10 gi|126466306|ref|YP_001041415.1| - 0.071 12.5 0.0 0.15 11.4 0.0 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) HisKA PF00512.25 gi|126466306|ref|YP_001041415.1| - 0.086 12.9 0.3 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF123 PF01986.16 gi|126466307|ref|YP_001041416.1| - 1.9e-25 89.2 0.0 2.7e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA_anti-codon PF01336.25 gi|126466308|ref|YP_001041417.1| - 5.3e-08 32.7 0.2 7.7e-08 32.2 0.2 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|126466308|ref|YP_001041417.1| - 0.0002 21.2 0.1 0.0003 20.7 0.1 1.3 1 1 0 1 1 1 1 Replication protein A OB domain PqqD PF05402.12 gi|126466309|ref|YP_001041418.1| - 3.7e-09 36.8 0.1 4.9e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) FtsX PF02687.21 gi|126466311|ref|YP_001041420.1| - 1.7 9.1 29.3 6.6 7.3 0.2 3.2 2 1 1 3 3 3 0 FtsX-like permease family Transglut_core PF01841.19 gi|126466312|ref|YP_001041421.1| - 2.7e-13 50.4 0.0 4.8e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily I-EGF_1 PF18372.1 gi|126466313|ref|YP_001041422.1| - 0.21 11.7 0.2 0.31 11.1 0.2 1.3 1 0 0 1 1 1 0 Integrin beta epidermal growth factor like domain 1 Thiolase_N PF00108.23 gi|126466314|ref|YP_001041423.1| - 1.7e-19 70.2 0.0 9.8e-19 67.7 0.0 2.1 1 1 1 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|126466314|ref|YP_001041423.1| - 4.8e-11 42.4 0.0 1e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|126466314|ref|YP_001041423.1| - 1.6e-05 24.6 1.3 4.7e-05 23.1 1.3 1.9 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|126466314|ref|YP_001041423.1| - 0.00013 21.9 0.1 0.0089 16.0 0.0 2.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Se-cys_synth_N PF12390.8 gi|126466314|ref|YP_001041423.1| - 0.085 13.1 0.1 23 5.3 0.0 3.4 3 1 0 3 3 3 0 Selenocysteine synthase N terminal ACP_syn_III PF08545.10 gi|126466314|ref|YP_001041423.1| - 0.19 11.6 2.9 14 5.6 0.0 3.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Carboxyl_trans PF01039.22 gi|126466315|ref|YP_001041424.1| - 1.8e-186 620.6 0.2 2e-186 620.4 0.2 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|126466315|ref|YP_001041424.1| - 2.8e-06 27.0 0.1 5.1e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) Biotin_lipoyl PF00364.22 gi|126466316|ref|YP_001041425.1| - 4.6e-18 64.8 5.4 4.6e-18 64.8 5.4 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|126466316|ref|YP_001041425.1| - 1.8e-14 53.3 3.9 1.2e-07 31.4 0.1 2.9 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|126466316|ref|YP_001041425.1| - 2.6e-08 34.5 1.1 0.0045 17.7 0.0 3.3 3 1 0 3 3 3 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|126466316|ref|YP_001041425.1| - 3.4e-07 29.7 0.3 0.0081 15.4 0.1 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|126466316|ref|YP_001041425.1| - 4.2e-06 26.7 1.3 4.2e-06 26.7 1.3 1.9 2 1 0 2 2 2 1 Glycine cleavage H-protein Peptidase_M23 PF01551.22 gi|126466316|ref|YP_001041425.1| - 0.00072 19.7 0.5 0.04 14.1 0.2 3.2 2 1 0 2 2 2 1 Peptidase family M23 RnfC_N PF13375.6 gi|126466316|ref|YP_001041425.1| - 0.0012 18.8 3.5 0.012 15.6 0.7 3.0 2 1 1 3 3 3 1 RnfC Barrel sandwich hybrid domain PTS_EIIA_1 PF00358.20 gi|126466316|ref|YP_001041425.1| - 0.0096 15.7 0.8 1.1 9.0 0.1 2.8 1 1 1 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DUF2118 PF09891.9 gi|126466316|ref|YP_001041425.1| - 0.033 14.2 1.5 0.088 12.8 1.5 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) PASTA PF03793.19 gi|126466316|ref|YP_001041425.1| - 0.078 12.8 0.9 0.53 10.2 0.1 2.4 1 1 1 2 2 2 0 PASTA domain Prot_ATP_ID_OB PF16450.5 gi|126466316|ref|YP_001041425.1| - 0.079 12.9 0.6 5.6 7.0 0.0 3.1 3 0 0 3 3 3 0 Proteasomal ATPase OB C-terminal domain eIF-1a PF01176.19 gi|126466316|ref|YP_001041425.1| - 0.081 12.7 5.4 15 5.5 0.0 3.6 3 1 1 4 4 4 0 Translation initiation factor 1A / IF-1 SSXT PF05030.12 gi|126466316|ref|YP_001041425.1| - 0.18 11.4 0.3 13 5.5 0.1 2.3 2 0 0 2 2 2 0 SSXT protein (N-terminal region) PYNP_C PF07831.13 gi|126466316|ref|YP_001041425.1| - 0.28 10.9 3.1 4.2 7.1 0.1 2.7 3 0 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain CxxCxxCC PF03692.15 gi|126466318|ref|YP_001041427.1| - 2.8e-07 31.1 0.0 5.5e-07 30.2 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Na_H_Exchanger PF00999.21 gi|126466319|ref|YP_001041428.1| - 3.5e-53 180.8 53.1 4.2e-53 180.5 53.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family UPF0113 PF03657.13 gi|126466320|ref|YP_001041429.1| - 1.2e-15 57.5 2.4 1.5e-15 57.2 0.3 2.2 3 0 0 3 3 3 1 UPF0113 PUA domain Methyltr_RsmB-F PF01189.17 gi|126466321|ref|YP_001041430.1| - 9.8e-45 152.7 0.0 1.3e-44 152.2 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|126466321|ref|YP_001041430.1| - 1.5e-08 35.0 0.0 2.4e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|126466321|ref|YP_001041430.1| - 0.0018 18.4 0.0 0.0024 18.0 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase DUF72 PF01904.18 gi|126466322|ref|YP_001041431.1| - 2e-40 139.2 1.1 2.5e-40 138.9 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 MAP65_ASE1 PF03999.12 gi|126466324|ref|YP_001041433.1| - 0.019 13.7 0.2 0.024 13.4 0.2 1.0 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Alpha_Helical PF18489.1 gi|126466324|ref|YP_001041433.1| - 0.033 14.4 0.1 0.035 14.3 0.1 1.1 1 0 0 1 1 1 0 Alpha helical domain Peptidase_S78_2 PF14550.6 gi|126466324|ref|YP_001041433.1| - 0.16 12.1 3.8 1.1 9.4 0.4 2.0 1 1 1 2 2 2 0 Putative phage serine protease XkdF Lig_C PF18330.1 gi|126466325|ref|YP_001041434.1| - 1.2e-19 70.6 0.0 2.3e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|126466325|ref|YP_001041434.1| - 7.4e-17 62.1 0.1 1.5e-16 61.1 0.1 1.5 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|126466325|ref|YP_001041434.1| - 2.5e-06 27.3 1.2 0.00033 20.4 1.2 2.3 1 1 0 1 1 1 1 ATP dependent DNA ligase domain 4HB_MCP_1 PF12729.7 gi|126466325|ref|YP_001041434.1| - 0.11 12.1 0.8 0.22 11.1 0.8 1.5 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Spermine_synth PF01564.17 gi|126466326|ref|YP_001041435.1| - 2.4e-54 183.6 0.1 3.1e-54 183.2 0.1 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|126466326|ref|YP_001041435.1| - 2.6e-09 36.8 0.0 7.6e-09 35.3 0.0 1.9 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|126466326|ref|YP_001041435.1| - 1e-06 29.3 0.0 1.8e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126466326|ref|YP_001041435.1| - 1.7e-06 28.6 0.0 2.9e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|126466326|ref|YP_001041435.1| - 4.1e-05 22.9 1.5 0.013 14.7 0.1 2.2 1 1 1 2 2 2 2 Branched-chain polyamine synthase A C-terminal domain Methyltransf_31 PF13847.6 gi|126466326|ref|YP_001041435.1| - 0.0006 19.6 0.0 0.00084 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126466326|ref|YP_001041435.1| - 0.0012 19.5 0.0 0.0029 18.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|126466326|ref|YP_001041435.1| - 0.0031 17.4 0.0 0.0053 16.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|126466326|ref|YP_001041435.1| - 0.0092 15.5 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|126466326|ref|YP_001041435.1| - 0.042 14.9 0.0 0.078 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain NAD_binding_7 PF13241.6 gi|126466326|ref|YP_001041435.1| - 0.18 12.3 0.1 0.36 11.3 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding ABC_tran PF00005.27 gi|126466327|ref|YP_001041436.1| - 5.1e-34 117.7 0.0 7.2e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126466327|ref|YP_001041436.1| - 3.1e-07 30.5 0.1 0.0045 16.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126466327|ref|YP_001041436.1| - 9.5e-06 25.2 0.0 0.00092 18.7 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126466327|ref|YP_001041436.1| - 0.00073 19.4 0.1 1 9.0 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|126466327|ref|YP_001041436.1| - 0.001 19.5 0.0 0.0027 18.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|126466327|ref|YP_001041436.1| - 0.0013 18.4 0.2 0.0026 17.4 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|126466327|ref|YP_001041436.1| - 0.0042 17.4 0.1 0.0063 16.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|126466327|ref|YP_001041436.1| - 0.0073 16.2 0.3 0.018 14.9 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|126466327|ref|YP_001041436.1| - 0.011 16.3 0.2 0.024 15.1 0.2 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|126466327|ref|YP_001041436.1| - 0.042 13.5 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|126466327|ref|YP_001041436.1| - 0.07 12.3 0.4 0.17 11.0 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|126466327|ref|YP_001041436.1| - 0.072 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|126466327|ref|YP_001041436.1| - 0.078 11.7 0.0 0.12 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein T4SS-DNA_transf PF02534.14 gi|126466327|ref|YP_001041436.1| - 0.091 11.5 0.2 0.13 11.1 0.2 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer NTPase_1 PF03266.15 gi|126466327|ref|YP_001041436.1| - 0.1 12.5 0.6 2.5 8.0 0.1 2.4 2 1 0 2 2 2 0 NTPase NACHT PF05729.12 gi|126466327|ref|YP_001041436.1| - 0.13 12.2 0.3 0.29 11.0 0.1 1.7 1 1 1 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|126466327|ref|YP_001041436.1| - 0.15 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|126466327|ref|YP_001041436.1| - 0.15 11.4 0.1 0.36 10.2 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI G-alpha PF00503.20 gi|126466327|ref|YP_001041436.1| - 0.17 11.0 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|126466327|ref|YP_001041436.1| - 0.23 11.6 0.4 0.47 10.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.9 gi|126466328|ref|YP_001041437.1| - 7.5e-07 29.3 0.0 0.062 13.6 0.0 4.7 4 0 0 4 4 4 3 NPCBM-associated, NEW3 domain of alpha-galactosidase He_PIG PF05345.12 gi|126466328|ref|YP_001041437.1| - 0.12 12.6 1.3 1.5 9.1 0.3 3.6 3 0 0 3 3 3 0 Putative Ig domain DUF11 PF01345.18 gi|126466328|ref|YP_001041437.1| - 0.23 11.8 11.4 11 6.4 0.1 6.1 6 0 0 6 6 6 0 Domain of unknown function DUF11 MacB_PCD PF12704.7 gi|126466329|ref|YP_001041438.1| - 1.3e-16 61.6 0.7 1.3e-16 61.6 0.7 2.5 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|126466329|ref|YP_001041438.1| - 1.7e-12 47.6 7.3 1.7e-12 47.6 7.3 3.3 3 1 0 3 3 3 1 FtsX-like permease family DUF4083 PF13314.6 gi|126466329|ref|YP_001041438.1| - 3.5 7.7 6.0 7.2 6.6 1.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4083) MatE PF01554.18 gi|126466330|ref|YP_001041439.1| - 2.4e-62 209.3 36.4 1.1e-35 122.7 9.3 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|126466330|ref|YP_001041439.1| - 1.8e-09 37.8 35.3 5.6e-07 29.7 12.8 3.7 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF412 PF04217.13 gi|126466330|ref|YP_001041439.1| - 8.2 6.3 6.0 1.1 9.2 1.0 2.1 3 0 0 3 3 3 0 Protein of unknown function, DUF412 PadR PF03551.14 gi|126466331|ref|YP_001041440.1| - 7.2e-10 38.7 1.3 1.1e-09 38.1 1.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|126466331|ref|YP_001041440.1| - 4.6e-05 23.5 0.1 8.4e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|126466331|ref|YP_001041440.1| - 0.00038 21.1 0.6 0.00071 20.2 0.5 1.5 1 1 0 1 1 1 1 Replication terminator protein HTH_24 PF13412.6 gi|126466331|ref|YP_001041440.1| - 0.028 14.0 0.3 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding FUR PF01475.19 gi|126466331|ref|YP_001041440.1| - 0.055 13.6 0.1 0.098 12.8 0.1 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|126466331|ref|YP_001041440.1| - 0.065 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.6 gi|126466331|ref|YP_001041440.1| - 0.18 11.8 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation PFO_beta_C PF12367.8 gi|126466332|ref|YP_001041441.1| - 4.7e-30 103.5 0.5 1e-29 102.5 0.5 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal TPP_enzyme_C PF02775.21 gi|126466332|ref|YP_001041441.1| - 4e-28 98.1 0.3 6.1e-28 97.5 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YHYH PF14240.6 gi|126466332|ref|YP_001041441.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 YHYH protein POR_N PF01855.19 gi|126466333|ref|YP_001041442.1| - 1.1e-51 175.9 0.0 1.7e-51 175.2 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|126466333|ref|YP_001041442.1| - 1.7e-36 126.0 0.0 4.2e-36 124.7 0.0 1.7 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.20 gi|126466333|ref|YP_001041442.1| - 5.2e-08 32.8 0.0 1.3e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|126466333|ref|YP_001041442.1| - 2.3e-06 27.8 0.0 5e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|126466333|ref|YP_001041442.1| - 0.00013 21.6 0.4 0.00023 20.8 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OxoGdeHyase_C PF16870.5 gi|126466333|ref|YP_001041442.1| - 0.16 11.7 0.1 0.32 10.7 0.1 1.4 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal Phage_holin_3_6 PF07332.11 gi|126466335|ref|YP_001041444.1| - 0.00056 19.9 1.2 0.00056 19.9 1.2 1.3 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2254 PF10011.9 gi|126466335|ref|YP_001041444.1| - 0.0015 17.4 1.0 0.0037 16.2 1.1 1.6 1 1 0 1 1 1 1 Predicted membrane protein (DUF2254) O-antigen_lig PF13425.6 gi|126466335|ref|YP_001041444.1| - 0.0042 15.9 0.1 0.0055 15.5 0.1 1.1 1 0 0 1 1 1 1 O-antigen ligase like membrane protein Connexin PF00029.19 gi|126466335|ref|YP_001041444.1| - 0.085 12.6 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Connexin T2SSM PF04612.12 gi|126466335|ref|YP_001041444.1| - 0.48 10.5 2.0 4.5 7.3 0.0 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DPM2 PF07297.12 gi|126466335|ref|YP_001041444.1| - 2.1 8.7 10.2 40 4.6 10.2 2.0 1 1 0 1 1 1 0 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) RPN7 PF10602.9 gi|126466335|ref|YP_001041444.1| - 5.5 6.7 6.8 7.7 6.2 6.8 1.2 1 0 0 1 1 1 0 26S proteasome subunit RPN7 POR PF01558.18 gi|126466336|ref|YP_001041445.1| - 1.2e-41 142.7 0.0 1.4e-41 142.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|126466337|ref|YP_001041446.1| - 1.5e-14 53.1 15.2 1.8e-08 33.9 5.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|126466337|ref|YP_001041446.1| - 7.6e-11 42.0 9.2 9.6e-11 41.7 9.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|126466337|ref|YP_001041446.1| - 1.2e-09 37.8 13.6 1.9e-05 24.5 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|126466337|ref|YP_001041446.1| - 1e-07 32.0 20.1 1.4e-05 25.1 10.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|126466337|ref|YP_001041446.1| - 2.4e-07 30.8 9.2 4.6e-07 29.9 9.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|126466337|ref|YP_001041446.1| - 4e-07 30.9 8.1 0.00067 20.5 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|126466337|ref|YP_001041446.1| - 1.9e-06 27.6 11.2 0.00026 20.9 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|126466337|ref|YP_001041446.1| - 2.3e-06 28.1 10.1 1.8e-05 25.2 11.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|126466337|ref|YP_001041446.1| - 0.00012 22.6 11.3 0.0018 18.8 1.3 2.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|126466337|ref|YP_001041446.1| - 0.0034 17.8 10.7 0.14 12.7 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|126466337|ref|YP_001041446.1| - 0.0098 16.6 12.0 0.37 11.5 3.1 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|126466337|ref|YP_001041446.1| - 0.03 14.9 10.6 0.21 12.2 2.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|126466337|ref|YP_001041446.1| - 0.035 14.6 12.4 0.1 13.1 2.5 2.2 1 1 2 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|126466337|ref|YP_001041446.1| - 0.33 11.2 7.0 0.88 9.8 7.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|126466337|ref|YP_001041446.1| - 2.3 9.1 12.2 0.99 10.3 2.6 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|126466338|ref|YP_001041447.1| - 2.4e-74 250.0 0.1 3.1e-74 249.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|126466338|ref|YP_001041447.1| - 7.2e-31 106.5 0.0 1.7e-30 105.3 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|126466338|ref|YP_001041447.1| - 3.5e-06 26.9 0.0 1e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|126466339|ref|YP_001041448.1| - 4.7e-24 84.9 0.1 6.3e-24 84.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AsnC_trans_reg PF01037.21 gi|126466340|ref|YP_001041449.1| - 0.00012 21.9 0.4 0.0015 18.4 0.1 2.0 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain NusG PF02357.19 gi|126466340|ref|YP_001041449.1| - 0.054 14.0 0.3 0.084 13.4 0.3 1.3 1 1 0 1 1 1 0 Transcription termination factor nusG HycI PF01750.18 gi|126466341|ref|YP_001041450.1| - 1.8e-10 40.7 0.8 3.3e-10 39.9 0.6 1.4 1 1 0 1 1 1 1 Hydrogenase maturation protease DUF1256 PF06866.11 gi|126466341|ref|YP_001041450.1| - 0.00063 19.2 0.7 0.053 12.9 0.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1256) Pyr_redox_2 PF07992.14 gi|126466342|ref|YP_001041451.1| - 0.058 12.6 0.1 0.36 10.0 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|126466342|ref|YP_001041451.1| - 0.058 12.1 0.0 0.081 11.6 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|126466342|ref|YP_001041451.1| - 0.31 10.2 0.0 0.64 9.2 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain AdoMet_dc PF02675.15 gi|126466343|ref|YP_001041452.1| - 2e-33 114.8 0.0 2.3e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PGM_PMM_I PF02878.16 gi|126466344|ref|YP_001041453.1| - 4.2e-31 107.5 0.0 1.7e-30 105.5 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|126466344|ref|YP_001041453.1| - 4.5e-19 69.0 0.0 1.6e-18 67.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|126466344|ref|YP_001041453.1| - 2.6e-09 37.1 0.0 6.4e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|126466344|ref|YP_001041453.1| - 0.014 15.6 0.0 0.036 14.3 0.0 1.7 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Amidohydro_3 PF07969.11 gi|126466346|ref|YP_001041455.1| - 1.1e-72 246.1 0.0 1.4e-72 245.7 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|126466346|ref|YP_001041455.1| - 8.1e-09 35.2 0.0 0.00024 20.6 0.0 3.2 2 1 0 2 2 2 2 Amidohydrolase family Orthopox_A49R PF06489.11 gi|126466347|ref|YP_001041456.1| - 0.058 13.6 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 Orthopoxvirus A49R protein CDC50 PF03381.15 gi|126466347|ref|YP_001041456.1| - 0.072 12.6 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 LEM3 (ligand-effect modulator 3) family / CDC50 family CBS PF00571.28 gi|126466348|ref|YP_001041457.1| - 6.2e-11 42.6 3.4 0.00014 22.2 0.1 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|126466348|ref|YP_001041457.1| - 0.068 13.5 0.4 0.17 12.2 0.2 1.8 2 0 0 2 2 2 0 ParB-like nuclease domain Exonuc_VIII PF06630.11 gi|126466348|ref|YP_001041457.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Enterobacterial exodeoxyribonuclease VIII Peptidase_C39_2 PF13529.6 gi|126466348|ref|YP_001041457.1| - 0.2 12.2 0.1 0.51 10.9 0.0 1.6 2 0 0 2 2 2 0 Peptidase_C39 like family MobB PF03205.14 gi|126466349|ref|YP_001041458.1| - 1.5e-14 54.1 0.0 2e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.6 gi|126466349|ref|YP_001041458.1| - 0.008 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|126466349|ref|YP_001041458.1| - 0.013 15.6 0.0 0.014 15.5 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DAO PF01266.24 gi|126466350|ref|YP_001041459.1| - 2.9e-10 40.3 1.0 0.00015 21.5 0.8 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|126466350|ref|YP_001041459.1| - 6.2e-09 35.4 0.3 2.5e-07 30.1 0.4 2.6 3 0 0 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 gi|126466350|ref|YP_001041459.1| - 1.3e-08 34.3 0.0 7.6e-07 28.5 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|126466350|ref|YP_001041459.1| - 3.2e-08 33.2 0.1 0.0001 21.7 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|126466350|ref|YP_001041459.1| - 4.5e-07 29.6 1.5 2.4e-06 27.2 0.5 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|126466350|ref|YP_001041459.1| - 1.5e-06 27.7 0.2 2.8e-06 26.8 0.2 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|126466350|ref|YP_001041459.1| - 2.1e-06 27.1 0.3 3.3e-06 26.4 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|126466350|ref|YP_001041459.1| - 2.5e-06 26.5 0.5 0.00011 21.1 0.2 2.3 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|126466350|ref|YP_001041459.1| - 4.9e-06 26.0 0.0 9.3e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|126466350|ref|YP_001041459.1| - 1.6e-05 25.4 0.5 0.0057 17.2 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|126466350|ref|YP_001041459.1| - 3.2e-05 23.0 0.0 0.14 10.9 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|126466350|ref|YP_001041459.1| - 5.7e-05 23.3 0.2 5.7e-05 23.3 0.2 2.4 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|126466350|ref|YP_001041459.1| - 0.00039 19.8 0.0 0.00091 18.6 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|126466350|ref|YP_001041459.1| - 0.011 15.6 0.2 0.019 14.8 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|126466350|ref|YP_001041459.1| - 0.015 14.6 0.4 0.025 13.8 0.4 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|126466350|ref|YP_001041459.1| - 0.1 12.2 0.7 0.61 9.6 0.1 2.3 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF429 PF04250.13 gi|126466351|ref|YP_001041460.1| - 0.00031 20.6 0.0 0.0045 16.8 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF4350 PF14258.6 gi|126466351|ref|YP_001041460.1| - 0.0063 16.9 0.0 18 5.8 0.0 3.1 2 1 1 3 3 3 2 Domain of unknown function (DUF4350) Glutaredoxin PF00462.24 gi|126466351|ref|YP_001041460.1| - 0.087 13.1 0.1 13 6.1 0.1 2.6 3 0 0 3 3 3 0 Glutaredoxin Osw5 PF17062.5 gi|126466352|ref|YP_001041461.1| - 0.23 11.6 4.1 0.23 11.6 0.7 2.6 2 0 0 2 2 2 0 Outer spore wall 5 Peptidase_A8 PF01252.18 gi|126466352|ref|YP_001041461.1| - 3 8.1 11.2 0.15 12.3 1.2 2.7 2 1 0 2 2 2 0 Signal peptidase (SPase) II DHHA1 PF02272.19 gi|126466353|ref|YP_001041462.1| - 2.7e-08 34.3 0.8 8.2e-08 32.8 0.8 1.9 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|126466353|ref|YP_001041462.1| - 3.4e-05 24.0 0.0 5.3e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 DHH family DUF4817 PF16087.5 gi|126466353|ref|YP_001041462.1| - 0.18 11.6 0.0 0.48 10.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain (DUF4817) DUF815 PF05673.13 gi|126466354|ref|YP_001041463.1| - 0.076 12.2 0.9 0.34 10.0 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ATPase PF06745.13 gi|126466355|ref|YP_001041464.1| - 4.3e-30 104.8 0.0 5.1e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.6 gi|126466355|ref|YP_001041464.1| - 1.9e-06 28.2 0.0 3.4e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|126466355|ref|YP_001041464.1| - 9.1e-05 22.5 0.1 0.00012 22.0 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DnaB_C PF03796.15 gi|126466355|ref|YP_001041464.1| - 0.00011 21.7 0.0 0.0008 18.8 0.0 1.9 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain TniB PF05621.11 gi|126466355|ref|YP_001041464.1| - 0.001 18.5 0.1 0.66 9.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial TniB protein AAA_16 PF13191.6 gi|126466355|ref|YP_001041464.1| - 0.0011 19.4 0.0 0.0014 19.0 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|126466355|ref|YP_001041464.1| - 0.0022 17.8 0.1 0.0039 16.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|126466355|ref|YP_001041464.1| - 0.0025 18.4 1.0 0.005 17.4 1.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|126466355|ref|YP_001041464.1| - 0.027 14.4 0.1 0.056 13.4 0.1 1.6 1 1 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|126466355|ref|YP_001041464.1| - 0.03 14.7 0.0 0.055 13.9 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|126466355|ref|YP_001041464.1| - 0.044 13.9 0.0 0.064 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|126466355|ref|YP_001041464.1| - 0.065 13.3 0.2 0.17 11.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_32 PF13654.6 gi|126466355|ref|YP_001041464.1| - 0.066 12.0 0.5 0.16 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|126466355|ref|YP_001041464.1| - 0.07 13.3 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_25 PF13481.6 gi|126466355|ref|YP_001041464.1| - 0.12 12.0 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|126466355|ref|YP_001041464.1| - 0.16 11.8 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 NTPase IstB_IS21 PF01695.17 gi|126466355|ref|YP_001041464.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|126466356|ref|YP_001041465.1| - 0.16 12.2 0.0 0.47 10.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF150 PF02576.17 gi|126466357|ref|YP_001041466.1| - 0.021 15.2 0.1 0.066 13.6 0.1 1.9 1 0 0 1 1 1 0 RimP N-terminal domain DUF3155 PF11352.8 gi|126466357|ref|YP_001041466.1| - 0.03 14.7 0.0 0.059 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3155) V4R PF02830.18 gi|126466358|ref|YP_001041467.1| - 2.8e-08 33.6 0.0 4.5e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 V4R domain ACT PF01842.25 gi|126466358|ref|YP_001041467.1| - 0.0025 17.6 0.1 0.012 15.4 0.1 2.2 2 0 0 2 2 2 1 ACT domain T2SSE PF00437.20 gi|126466359|ref|YP_001041468.1| - 1.1e-41 142.8 0.0 1.4e-36 126.0 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|126466359|ref|YP_001041468.1| - 9.4e-20 70.9 0.2 2e-19 69.9 0.2 1.5 1 0 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|126466359|ref|YP_001041468.1| - 7.8e-06 26.1 2.0 0.012 15.9 0.0 3.5 4 0 0 4 4 4 2 LAGLIDADG-like domain ABC_tran PF00005.27 gi|126466359|ref|YP_001041468.1| - 0.00033 21.2 0.0 0.00082 19.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|126466359|ref|YP_001041468.1| - 0.023 14.6 0.1 0.049 13.5 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|126466359|ref|YP_001041468.1| - 0.057 12.9 0.1 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|126466359|ref|YP_001041468.1| - 0.27 11.0 1.5 0.33 10.7 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|126466360|ref|YP_001041469.1| - 1.1e-16 60.9 9.3 1.7e-09 37.7 2.6 3.9 3 1 0 3 3 3 2 Type II secretion system (T2SS), protein F FixQ PF05545.11 gi|126466362|ref|YP_001041471.1| - 0.08 12.9 0.7 0.22 11.5 0.6 1.7 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Phage_sheath_1N PF17481.2 gi|126466362|ref|YP_001041471.1| - 0.11 13.0 0.2 0.29 11.6 0.2 1.8 1 1 0 1 1 1 0 Phage tail sheath protein beta-sandwich domain Mannosidase_ig PF17786.1 gi|126466364|ref|YP_001041473.1| - 0.036 14.7 0.0 0.061 13.9 0.0 1.3 1 0 0 1 1 1 0 Mannosidase Ig/CBM-like domain TrkA_N PF02254.18 gi|126466366|ref|YP_001041475.1| - 7.6e-16 58.4 0.1 1.8e-15 57.2 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|126466366|ref|YP_001041475.1| - 7.2e-13 48.3 10.3 1.2e-12 47.6 10.3 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|126466366|ref|YP_001041475.1| - 0.0024 17.6 0.3 0.034 14.0 0.0 2.8 3 0 0 3 3 3 1 TrkA-C domain PglD_N PF17836.1 gi|126466366|ref|YP_001041475.1| - 0.037 14.6 0.6 0.72 10.5 0.0 2.6 2 1 0 2 2 2 0 PglD N-terminal domain Ion_trans PF00520.31 gi|126466366|ref|YP_001041475.1| - 0.066 12.4 7.6 0.097 11.9 7.6 1.2 1 0 0 1 1 1 0 Ion transport protein HTH_24 PF13412.6 gi|126466367|ref|YP_001041476.1| - 5.7e-07 29.0 0.3 8.1e-07 28.5 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|126466367|ref|YP_001041476.1| - 2.1e-06 27.6 0.2 2.6e-06 27.3 0.2 1.1 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|126466367|ref|YP_001041476.1| - 6.7e-06 25.8 0.0 8e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.10 gi|126466367|ref|YP_001041476.1| - 2.8e-05 23.9 0.1 4.3e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|126466367|ref|YP_001041476.1| - 0.00011 22.0 0.1 0.00016 21.5 0.1 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|126466367|ref|YP_001041476.1| - 0.00027 20.8 0.0 0.00034 20.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HARE-HTH PF05066.13 gi|126466367|ref|YP_001041476.1| - 0.00027 21.2 0.0 0.00038 20.8 0.0 1.3 1 0 0 1 1 1 1 HB1, ASXL, restriction endonuclease HTH domain HTH_20 PF12840.7 gi|126466367|ref|YP_001041476.1| - 0.00046 20.2 0.0 0.00054 20.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|126466367|ref|YP_001041476.1| - 0.001 19.4 0.0 0.0011 19.2 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator Rio2_N PF09202.11 gi|126466367|ref|YP_001041476.1| - 0.0014 18.8 0.0 0.0016 18.6 0.0 1.1 1 0 0 1 1 1 1 Rio2, N-terminal HTH_5 PF01022.20 gi|126466367|ref|YP_001041476.1| - 0.0015 18.4 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|126466367|ref|YP_001041476.1| - 0.002 18.0 0.1 0.0023 17.9 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.9 gi|126466367|ref|YP_001041476.1| - 0.0039 17.3 0.2 0.0043 17.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HrcA_DNA-bdg PF03444.15 gi|126466367|ref|YP_001041476.1| - 0.0041 16.7 0.2 0.0046 16.6 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Type2_restr_D3 PF16902.5 gi|126466367|ref|YP_001041476.1| - 0.011 15.6 0.1 0.02 14.8 0.1 1.4 1 1 0 1 1 1 0 Type-2 restriction enzyme D3 domain HTH_Mga PF08280.11 gi|126466367|ref|YP_001041476.1| - 0.013 15.5 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF977 PF06163.11 gi|126466367|ref|YP_001041476.1| - 0.018 15.0 0.0 0.02 14.9 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF2089 PF09862.9 gi|126466367|ref|YP_001041476.1| - 0.023 14.7 0.1 0.028 14.4 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_28 PF13518.6 gi|126466367|ref|YP_001041476.1| - 0.026 14.6 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|126466367|ref|YP_001041476.1| - 0.036 14.6 0.0 0.046 14.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|126466367|ref|YP_001041476.1| - 0.046 13.5 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TBPIP PF07106.13 gi|126466367|ref|YP_001041476.1| - 0.055 13.4 0.4 0.078 12.9 0.4 1.4 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain LexA_DNA_bind PF01726.16 gi|126466367|ref|YP_001041476.1| - 0.056 13.2 0.1 0.068 13.0 0.1 1.1 1 0 0 1 1 1 0 LexA DNA binding domain FaeA PF04703.12 gi|126466367|ref|YP_001041476.1| - 0.06 13.7 0.0 0.072 13.5 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein DUF3489 PF11994.8 gi|126466367|ref|YP_001041476.1| - 0.072 13.2 0.1 0.092 12.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_Crp_2 PF13545.6 gi|126466367|ref|YP_001041476.1| - 0.08 12.9 0.0 0.09 12.8 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4364 PF14277.6 gi|126466367|ref|YP_001041476.1| - 0.09 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|126466367|ref|YP_001041476.1| - 0.091 12.8 0.0 0.095 12.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation MarR PF01047.22 gi|126466367|ref|YP_001041476.1| - 0.098 12.6 0.1 0.2 11.6 0.1 1.5 1 1 1 2 2 2 0 MarR family GntR PF00392.21 gi|126466367|ref|YP_001041476.1| - 0.1 12.2 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TctB PF07331.11 gi|126466368|ref|YP_001041477.1| - 1.7 8.9 8.9 4.8 7.5 8.9 1.7 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family HD PF01966.22 gi|126466369|ref|YP_001041478.1| - 1.8e-09 37.9 0.5 7e-09 36.0 0.5 2.1 1 0 0 1 1 1 1 HD domain PdxJ PF03740.13 gi|126466369|ref|YP_001041478.1| - 0.11 11.6 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ PGM_PMM_I PF02878.16 gi|126466370|ref|YP_001041479.1| - 0.046 13.4 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RNA_pol_Rpb1_3 PF04983.18 gi|126466372|ref|YP_001041481.1| - 0.0063 16.5 0.0 0.0074 16.2 0.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 3 DUF3294 PF07957.11 gi|126466372|ref|YP_001041481.1| - 0.042 13.6 0.2 0.065 13.0 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3294) Sld5 PF05916.11 gi|126466372|ref|YP_001041481.1| - 0.053 14.0 0.5 0.33 11.4 0.0 2.0 2 0 0 2 2 2 0 GINS complex protein DUF1707 PF08044.11 gi|126466372|ref|YP_001041481.1| - 0.11 12.6 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) CitMHS PF03600.16 gi|126466373|ref|YP_001041482.1| - 0.00036 19.8 0.4 0.00058 19.2 0.2 1.3 1 1 0 1 1 1 1 Citrate transporter Srg PF02118.21 gi|126466373|ref|YP_001041482.1| - 0.12 12.0 9.7 0.49 10.0 0.6 2.8 2 1 1 3 3 3 0 Srg family chemoreceptor OppC_N PF12911.7 gi|126466373|ref|YP_001041482.1| - 0.68 10.0 0.1 0.68 10.0 0.1 2.8 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C MpPF26 PF07666.11 gi|126466373|ref|YP_001041482.1| - 1.3 9.1 14.1 3.1 7.9 7.1 2.4 2 0 0 2 2 2 0 M penetrans paralogue family 26 Peptidase_M50 PF02163.22 gi|126466375|ref|YP_001041484.1| - 7.7e-10 38.5 9.4 2.8e-06 26.8 0.7 3.2 2 1 1 3 3 3 3 Peptidase family M50 CTP_transf_like PF01467.26 gi|126466376|ref|YP_001041485.1| - 1.1e-10 41.9 0.0 2.1e-10 41.0 0.0 1.6 1 1 1 2 2 2 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|126466376|ref|YP_001041485.1| - 0.0015 17.8 0.2 0.042 13.1 0.2 2.0 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase CxxCxxCC PF03692.15 gi|126466377|ref|YP_001041486.1| - 6e-07 30.1 0.5 1.6e-06 28.7 0.5 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain BPL_LplA_LipB PF03099.19 gi|126466378|ref|YP_001041487.1| - 1.9e-08 34.3 0.1 3.3e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|126466378|ref|YP_001041487.1| - 0.065 13.1 0.3 0.11 12.4 0.3 1.3 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain PmbA_TldD PF01523.16 gi|126466379|ref|YP_001041488.1| - 1.9e-45 155.9 0.7 2.4e-45 155.5 0.7 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|126466380|ref|YP_001041489.1| - 1.3e-52 179.4 2.1 1.7e-52 179.0 2.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF4352 PF11611.8 gi|126466381|ref|YP_001041490.1| - 1.8e-05 25.0 0.2 2.7e-05 24.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) Pilin_N PF07790.11 gi|126466381|ref|YP_001041490.1| - 0.026 15.5 4.8 0.026 15.5 4.8 1.9 1 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal Calycin_like PF13944.6 gi|126466381|ref|YP_001041490.1| - 0.039 14.2 0.8 0.051 13.9 0.8 1.2 1 0 0 1 1 1 0 Calycin-like beta-barrel domain DarA_N PF18788.1 gi|126466381|ref|YP_001041490.1| - 0.13 12.3 0.1 9.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Defence against restriction A N-terminal DEAD PF00270.29 gi|126466383|ref|YP_001041492.1| - 2.8e-30 105.4 0.0 4.6e-30 104.7 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|126466383|ref|YP_001041492.1| - 2e-16 60.3 0.0 2.5e-14 53.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|126466383|ref|YP_001041492.1| - 2.7e-14 53.7 0.5 9.5e-14 51.9 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|126466383|ref|YP_001041492.1| - 9.8e-06 25.7 0.0 1.7e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.21 gi|126466383|ref|YP_001041492.1| - 0.0063 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|126466383|ref|YP_001041492.1| - 0.0084 16.4 0.0 0.016 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|126466383|ref|YP_001041492.1| - 0.019 14.7 0.0 0.062 13.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Ub-RnfH PF03658.14 gi|126466385|ref|YP_001041494.1| - 0.061 13.7 0.2 0.08 13.3 0.2 1.3 1 0 0 1 1 1 0 RnfH family Ubiquitin Halo_GVPC PF05465.13 gi|126466386|ref|YP_001041495.1| - 0.21 11.9 2.1 4 7.8 0.2 2.3 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat TFX_C PF14601.6 gi|126466388|ref|YP_001041497.1| - 7.5e-22 77.1 0.0 1.2e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4_2 PF08281.12 gi|126466388|ref|YP_001041497.1| - 0.00011 21.8 0.2 0.00023 20.8 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|126466388|ref|YP_001041497.1| - 0.0046 16.7 0.1 0.013 15.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1351 PF07083.11 gi|126466388|ref|YP_001041497.1| - 0.02 14.7 0.2 0.6 9.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1351) HTH_23 PF13384.6 gi|126466388|ref|YP_001041497.1| - 0.021 14.6 0.1 0.049 13.5 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|126466388|ref|YP_001041497.1| - 0.062 12.8 0.3 0.13 11.8 0.3 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|126466388|ref|YP_001041497.1| - 0.067 13.3 0.3 0.15 12.2 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|126466388|ref|YP_001041497.1| - 0.13 12.1 0.5 0.74 9.7 0.2 2.1 1 1 1 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) LDcluster4 PF18306.1 gi|126466390|ref|YP_001041499.1| - 3.6e-14 52.6 0.0 4.3e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family OAD_gamma PF04277.13 gi|126466391|ref|YP_001041500.1| - 2.1e-11 44.2 0.6 2.9e-11 43.8 0.6 1.2 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain DUF4446 PF14584.6 gi|126466391|ref|YP_001041500.1| - 0.083 12.9 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) OAD_beta PF03977.13 gi|126466392|ref|YP_001041501.1| - 4.5e-158 525.8 28.7 5e-158 525.6 28.7 1.0 1 0 0 1 1 1 1 Na+-transporting oxaloacetate decarboxylase beta subunit DUF1029 PF06269.12 gi|126466392|ref|YP_001041501.1| - 0.037 14.1 0.1 0.2 11.8 0.1 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1029) Peptidase_M55 PF04951.13 gi|126466393|ref|YP_001041502.1| - 1.3e-84 283.8 0.0 1.4e-84 283.6 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase LKAAEAR PF15478.6 gi|126466393|ref|YP_001041502.1| - 0.075 13.3 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function with LKAAEAR motif 4HBT PF03061.22 gi|126466395|ref|YP_001041504.1| - 0.039 14.3 0.0 0.053 13.9 0.0 1.3 1 0 0 1 1 1 0 Thioesterase superfamily DUF4894 PF16235.5 gi|126466395|ref|YP_001041504.1| - 0.11 12.9 1.4 0.15 12.4 1.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4894) DUF5374 PF17344.2 gi|126466395|ref|YP_001041504.1| - 0.16 11.9 0.3 0.27 11.2 0.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5374) HTH_IclR PF09339.10 gi|126466396|ref|YP_001041505.1| - 0.00032 20.4 0.1 0.00057 19.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|126466396|ref|YP_001041505.1| - 0.00094 19.0 0.6 0.00094 19.0 0.6 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|126466396|ref|YP_001041505.1| - 0.0011 18.8 0.0 0.0046 16.9 0.0 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|126466396|ref|YP_001041505.1| - 0.0018 18.1 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|126466396|ref|YP_001041505.1| - 0.0083 16.2 0.1 0.021 14.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|126466396|ref|YP_001041505.1| - 0.0084 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|126466396|ref|YP_001041505.1| - 0.019 15.3 0.1 0.033 14.5 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator Mnd1 PF03962.15 gi|126466396|ref|YP_001041505.1| - 0.025 14.8 0.0 0.044 14.1 0.0 1.4 1 0 0 1 1 1 0 Mnd1 HTH domain Sulfolobus_pRN PF05584.11 gi|126466396|ref|YP_001041505.1| - 0.042 13.9 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein HTH_34 PF13601.6 gi|126466396|ref|YP_001041505.1| - 0.048 13.8 0.1 0.078 13.2 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|126466396|ref|YP_001041505.1| - 0.093 12.7 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SMC_ScpB PF04079.16 gi|126466396|ref|YP_001041505.1| - 0.097 12.3 0.1 0.15 11.7 0.1 1.4 1 1 0 1 1 1 0 Segregation and condensation complex subunit ScpB Penicillinase_R PF03965.16 gi|126466396|ref|YP_001041505.1| - 0.12 12.7 0.2 0.18 12.2 0.2 1.4 1 1 0 1 1 1 0 Penicillinase repressor DUF5092 PF17010.5 gi|126466397|ref|YP_001041506.1| - 0.011 15.7 2.1 0.013 15.4 2.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF5092) PSI_PsaE PF02427.17 gi|126466397|ref|YP_001041506.1| - 0.033 13.9 0.1 4.4 7.1 0.0 2.3 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IV / PsaE TetR_C_5 PF08360.11 gi|126466397|ref|YP_001041506.1| - 0.042 14.0 0.1 0.057 13.6 0.1 1.3 1 0 0 1 1 1 0 QacR-like protein, C-terminal region GHMP_kinases_C PF08544.13 gi|126466397|ref|YP_001041506.1| - 0.17 12.3 0.1 0.25 11.7 0.1 1.4 1 1 0 1 1 1 0 GHMP kinases C terminal Radical_SAM PF04055.21 gi|126466398|ref|YP_001041507.1| - 3.5e-17 63.3 0.0 1.3e-16 61.4 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily tRNA-synt_1g PF09334.11 gi|126466399|ref|YP_001041508.1| - 5e-98 328.4 5.5 3.6e-52 177.4 0.3 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|126466399|ref|YP_001041508.1| - 2.9e-22 78.7 6.6 1.9e-12 46.3 1.9 4.0 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|126466399|ref|YP_001041508.1| - 5.2e-11 42.4 1.0 3.6e-07 29.8 0.2 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|126466399|ref|YP_001041508.1| - 2.4e-08 34.1 0.9 1.2e-07 31.8 0.0 2.4 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|126466399|ref|YP_001041508.1| - 6.2e-05 22.1 1.5 0.00045 19.2 0.0 2.9 3 1 1 4 4 4 1 tRNA synthetases class I (K) DUF4413 PF14372.6 gi|126466399|ref|YP_001041508.1| - 0.013 15.8 3.2 3.7 8.0 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4413) tRNA-synt_1c PF00749.21 gi|126466399|ref|YP_001041508.1| - 2.7 6.8 5.9 13 4.5 0.1 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (E and Q), catalytic domain Abhydrolase_1 PF00561.20 gi|126466401|ref|YP_001041510.1| - 1.4e-16 60.9 0.0 3e-08 33.6 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|126466401|ref|YP_001041510.1| - 1.7e-10 40.6 0.0 3.1e-05 23.3 0.0 2.4 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|126466401|ref|YP_001041510.1| - 1e-09 39.3 0.0 4.6e-07 30.7 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|126466401|ref|YP_001041510.1| - 2.7e-05 24.1 0.0 5e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase Abhydrolase_5 PF12695.7 gi|126466401|ref|YP_001041510.1| - 0.00021 21.1 0.0 0.0003 20.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.18 gi|126466401|ref|YP_001041510.1| - 0.00069 19.2 0.0 0.00087 18.9 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|126466401|ref|YP_001041510.1| - 0.00073 19.3 0.0 0.004 16.8 0.0 1.9 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Esterase PF00756.20 gi|126466401|ref|YP_001041510.1| - 0.0022 17.7 0.0 0.0087 15.7 0.0 2.0 1 1 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.16 gi|126466401|ref|YP_001041510.1| - 0.0046 16.8 0.0 0.034 13.9 0.0 1.9 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase UPF0227 PF05728.12 gi|126466401|ref|YP_001041510.1| - 0.006 16.5 0.1 0.0094 15.9 0.1 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) BAGE PF08180.11 gi|126466401|ref|YP_001041510.1| - 0.011 15.9 0.2 2.2 8.4 0.0 2.5 2 0 0 2 2 2 0 B melanoma antigen family Abhydrolase_4 PF08386.10 gi|126466401|ref|YP_001041510.1| - 0.068 13.3 0.0 0.098 12.8 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein DUF1057 PF06342.12 gi|126466401|ref|YP_001041510.1| - 0.18 10.8 0.0 14 4.6 0.0 2.4 1 1 1 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1057) ROK PF00480.20 gi|126466402|ref|YP_001041511.1| - 2.6e-53 181.4 0.0 3.2e-53 181.1 0.0 1.0 1 0 0 1 1 1 1 ROK family FtsA PF14450.6 gi|126466402|ref|YP_001041511.1| - 0.0082 16.6 0.0 0.092 13.2 0.0 2.2 1 1 0 1 1 1 1 Cell division protein FtsA Glucokinase PF02685.16 gi|126466402|ref|YP_001041511.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Glucokinase GHL6 PF14871.6 gi|126466403|ref|YP_001041512.1| - 1.3e-44 151.7 0.0 2.9e-44 150.5 0.0 1.7 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 Glyco_hydro_42M PF08532.10 gi|126466403|ref|YP_001041512.1| - 6.6e-13 48.6 0.1 4.7e-11 42.6 0.0 2.3 2 0 0 2 2 2 1 Beta-galactosidase trimerisation domain ThuA PF06283.11 gi|126466403|ref|YP_001041512.1| - 5.8e-05 23.4 0.0 0.0002 21.7 0.0 2.0 2 0 0 2 2 2 1 Trehalose utilisation FBA PF04300.13 gi|126466403|ref|YP_001041512.1| - 0.11 12.1 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 F-box associated region AP_endonuc_2 PF01261.24 gi|126466403|ref|YP_001041512.1| - 0.12 11.8 0.0 1.8 8.0 0.0 2.2 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel SpoIIM PF01944.17 gi|126466404|ref|YP_001041513.1| - 4.2e-09 36.6 17.4 4.2e-09 36.6 17.4 3.5 3 1 1 4 4 4 1 Stage II sporulation protein M DUF575 PF04746.12 gi|126466404|ref|YP_001041513.1| - 0.14 12.4 0.5 0.45 10.8 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF575) Asparaginase_2 PF01112.18 gi|126466405|ref|YP_001041514.1| - 5.6e-77 258.8 0.0 6.8e-77 258.5 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Methyltransf_23 PF13489.6 gi|126466406|ref|YP_001041515.1| - 8.8e-11 41.9 0.0 1.2e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|126466406|ref|YP_001041515.1| - 1.7e-08 35.1 0.2 5.8e-08 33.4 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|126466406|ref|YP_001041515.1| - 2.1e-07 31.5 0.0 4.2e-07 30.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|126466406|ref|YP_001041515.1| - 1.9e-06 28.5 0.0 3.4e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|126466406|ref|YP_001041515.1| - 0.0046 16.3 0.1 0.0088 15.4 0.1 1.4 1 1 0 1 1 1 1 O-methyltransferase domain Glyco_hydro_130 PF04041.13 gi|126466407|ref|YP_001041516.1| - 4.2e-81 272.4 1.1 4.8e-81 272.2 1.1 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase SIS PF01380.22 gi|126466408|ref|YP_001041517.1| - 3e-40 137.1 0.8 8.4e-25 87.1 0.5 2.6 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|126466408|ref|YP_001041517.1| - 3.5e-17 62.8 0.0 1.3e-16 61.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|126466408|ref|YP_001041517.1| - 9.8e-15 54.6 0.0 2.2e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|126466408|ref|YP_001041517.1| - 4.2e-06 25.9 0.0 5.8e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|126466408|ref|YP_001041517.1| - 0.00025 21.1 2.1 0.0037 17.3 0.6 2.7 2 1 1 3 3 3 1 SIS domain Amidohydro_1 PF01979.20 gi|126466409|ref|YP_001041518.1| - 9e-24 84.4 0.3 1.5e-23 83.7 0.3 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|126466409|ref|YP_001041518.1| - 2.5e-14 53.6 0.3 3.7e-06 26.7 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family DUF3970 PF13113.6 gi|126466409|ref|YP_001041518.1| - 0.17 12.1 0.0 1.6 9.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) PaREP1 PF05942.11 gi|126466410|ref|YP_001041519.1| - 9.7e-27 93.2 3.9 1.7e-26 92.4 3.9 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Snapin_Pallidin PF14712.6 gi|126466410|ref|YP_001041519.1| - 0.025 15.0 0.9 0.088 13.2 0.1 2.0 2 0 0 2 2 2 0 Snapin/Pallidin HEPN PF05168.14 gi|126466410|ref|YP_001041519.1| - 0.054 13.6 1.2 0.14 12.3 1.2 1.7 1 1 0 1 1 1 0 HEPN domain Exonuc_VII_S PF02609.16 gi|126466410|ref|YP_001041519.1| - 0.74 9.9 5.0 0.24 11.5 1.6 2.0 2 0 0 2 2 2 0 Exonuclease VII small subunit THDPS_N_2 PF14805.6 gi|126466410|ref|YP_001041519.1| - 3.4 7.9 5.9 3.7 7.8 4.1 2.2 2 1 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DUF1661 PF07877.11 gi|126466411|ref|YP_001041520.1| - 0.18 11.5 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1661) SDF PF00375.18 gi|126466412|ref|YP_001041521.1| - 5.6e-121 404.2 44.5 6.3e-121 404.1 44.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF1297 PF06973.12 gi|126466413|ref|YP_001041522.1| - 8.2e-54 182.0 0.0 9.1e-54 181.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) Aminotran_1_2 PF00155.21 gi|126466414|ref|YP_001041523.1| - 6.3e-12 45.3 0.0 7.2e-12 45.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II CcdA PF07362.12 gi|126466415|ref|YP_001041524.1| - 2.3e-06 27.9 3.7 3.2e-06 27.5 3.6 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.21 gi|126466415|ref|YP_001041524.1| - 0.00042 20.1 4.5 0.00042 20.1 4.5 2.5 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|126466415|ref|YP_001041524.1| - 0.26 12.1 6.0 0.35 11.7 6.0 1.3 1 0 0 1 1 1 0 Rv0623-like transcription factor PIN PF01850.21 gi|126466416|ref|YP_001041525.1| - 8.4e-09 36.0 0.5 1.1e-08 35.5 0.5 1.3 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|126466416|ref|YP_001041525.1| - 0.091 12.5 0.1 0.23 11.2 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5615) DUF2970 PF11174.8 gi|126466417|ref|YP_001041526.1| - 0.014 15.3 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) PaREP1 PF05942.11 gi|126466418|ref|YP_001041527.1| - 7.5e-32 109.7 5.4 8.5e-32 109.5 5.4 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PepSY PF03413.19 gi|126466419|ref|YP_001041528.1| - 0.06 13.9 0.5 0.12 12.9 0.5 1.6 1 1 0 1 1 1 0 Peptidase propeptide and YPEB domain PaREP1 PF05942.11 gi|126466420|ref|YP_001041529.1| - 3.1e-14 52.9 0.0 4.1e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|126466420|ref|YP_001041529.1| - 0.047 13.8 1.1 0.056 13.6 1.1 1.1 1 0 0 1 1 1 0 HEPN domain PS_pyruv_trans PF04230.13 gi|126466422|ref|YP_001041531.1| - 2.6e-06 27.6 0.1 3.3e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Polysacc_synt_C PF14667.6 gi|126466424|ref|YP_001041533.1| - 2.5e-05 24.4 17.5 2.5e-05 24.4 17.5 3.9 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|126466424|ref|YP_001041533.1| - 0.0041 16.8 3.7 0.0041 16.8 3.7 4.7 2 2 0 4 4 4 2 MatE LapA_dom PF06305.11 gi|126466424|ref|YP_001041533.1| - 0.54 10.1 0.1 0.54 10.1 0.1 5.5 6 2 2 8 8 8 0 Lipopolysaccharide assembly protein A domain Acyl_transf_3 PF01757.22 gi|126466425|ref|YP_001041534.1| - 0.017 14.2 0.1 0.017 14.2 0.1 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF4668 PF15701.5 gi|126466425|ref|YP_001041534.1| - 0.15 11.9 1.3 0.22 11.3 0.9 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4668) Sigma_reg_N PF13800.6 gi|126466425|ref|YP_001041534.1| - 0.33 11.3 3.6 0.31 11.3 2.9 1.3 1 1 0 1 1 1 0 Sigma factor regulator N-terminal ABC_tran PF00005.27 gi|126466427|ref|YP_001041536.1| - 4.2e-13 50.0 0.0 6.4e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126466427|ref|YP_001041536.1| - 1e-06 28.8 0.0 1.3e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126466427|ref|YP_001041536.1| - 6.1e-06 25.8 0.0 7.7e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|126466427|ref|YP_001041536.1| - 0.044 12.4 0.0 0.052 12.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|126466427|ref|YP_001041536.1| - 0.048 13.9 0.0 0.83 9.9 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|126466428|ref|YP_001041537.1| - 1e-16 61.2 15.9 1.4e-16 60.8 15.9 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4668 PF15701.5 gi|126466428|ref|YP_001041537.1| - 7.5 6.3 8.7 35 4.2 4.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4668) S-antigen PF05756.11 gi|126466429|ref|YP_001041538.1| - 0.26 11.7 0.2 0.38 11.1 0.2 1.2 1 0 0 1 1 1 0 S-antigen protein FUN14 PF04930.15 gi|126466429|ref|YP_001041538.1| - 3.6 8.1 10.1 1.2 9.6 3.9 2.5 2 0 0 2 2 2 0 FUN14 family DUF4870 PF09685.10 gi|126466430|ref|YP_001041539.1| - 1.4e-10 41.2 9.7 1.8e-10 40.9 9.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) TIC20 PF16166.5 gi|126466430|ref|YP_001041539.1| - 2.6e-06 27.4 2.6 2.9e-06 27.2 2.6 1.1 1 0 0 1 1 1 1 Chloroplast import apparatus Tic20-like Claudin_2 PF13903.6 gi|126466430|ref|YP_001041539.1| - 0.038 13.8 2.3 0.054 13.3 2.1 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF2207 PF09972.9 gi|126466430|ref|YP_001041539.1| - 0.12 11.1 5.9 0.14 10.9 5.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SLC3A2_N PF16028.5 gi|126466430|ref|YP_001041539.1| - 0.2 11.2 2.8 0.54 9.8 2.8 1.7 1 0 0 1 1 1 0 Solute carrier family 3 member 2 N-terminus FA_desaturase PF00487.24 gi|126466430|ref|YP_001041539.1| - 1.2 8.9 5.6 1.6 8.5 5.6 1.1 1 0 0 1 1 1 0 Fatty acid desaturase OrfB_Zn_ribbon PF07282.11 gi|126466431|ref|YP_001041540.1| - 1.9e-06 27.7 0.0 5.9e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Putative transposase DNA-binding domain RuvC_1 PF18516.1 gi|126466431|ref|YP_001041540.1| - 0.046 12.9 2.2 0.091 11.9 2.2 1.4 1 0 0 1 1 1 0 RuvC nuclease domain PBP PF01161.20 gi|126466432|ref|YP_001041541.1| - 2.1e-31 109.0 0.0 2.5e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF86 PF01934.17 gi|126466433|ref|YP_001041542.1| - 3.3e-16 59.2 0.2 3.7e-16 59.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|126466434|ref|YP_001041543.1| - 8.2e-12 45.0 0.0 1.4e-11 44.3 0.0 1.4 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126466434|ref|YP_001041543.1| - 0.00091 19.5 0.1 0.0014 18.8 0.0 1.4 2 0 0 2 2 2 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|126466434|ref|YP_001041543.1| - 0.043 13.4 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family Cucumopine_C PF18631.1 gi|126466434|ref|YP_001041543.1| - 0.16 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Cucumopine synthase C-terminal helical bundle domain PIN_3 PF13470.6 gi|126466434|ref|YP_001041543.1| - 0.18 12.5 0.0 0.26 12.1 0.0 1.3 1 0 0 1 1 1 0 PIN domain Reg_prop PF07494.11 gi|126466435|ref|YP_001041544.1| - 0.018 15.2 0.0 0.79 10.2 0.0 2.4 2 0 0 2 2 2 0 Two component regulator propeller DUF3782 PF12644.7 gi|126466437|ref|YP_001041546.1| - 4.6e-21 74.7 0.1 1.1e-20 73.5 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|126466437|ref|YP_001041546.1| - 3e-16 59.1 0.9 7.4e-16 57.9 0.9 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily XhlA PF10779.9 gi|126466437|ref|YP_001041546.1| - 0.032 14.4 0.1 0.062 13.5 0.1 1.4 1 0 0 1 1 1 0 Haemolysin XhlA SlyX PF04102.12 gi|126466437|ref|YP_001041546.1| - 0.059 14.0 0.6 0.1 13.3 0.6 1.3 1 0 0 1 1 1 0 SlyX AKNA PF12443.8 gi|126466437|ref|YP_001041546.1| - 0.08 13.6 0.1 0.13 13.0 0.1 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor NTP_transf_2 PF01909.23 gi|126466438|ref|YP_001041547.1| - 4.2e-10 39.8 0.1 1.4e-09 38.1 0.1 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|126466438|ref|YP_001041547.1| - 1e-07 32.0 0.0 1.2e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_transf PF04439.12 gi|126466438|ref|YP_001041547.1| - 0.055 12.6 0.0 0.065 12.3 0.0 1.1 1 0 0 1 1 1 0 Streptomycin adenylyltransferase Heliorhodopsin PF18761.1 gi|126466441|ref|YP_001041550.1| - 0.0069 15.7 2.8 0.0069 15.7 2.8 1.9 1 1 0 1 1 1 1 Heliorhodopsin ABC_tran PF00005.27 gi|126466442|ref|YP_001041551.1| - 1.5e-23 83.8 0.0 2.3e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126466442|ref|YP_001041551.1| - 6.3e-10 39.3 6.3 2.2e-05 24.4 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|126466442|ref|YP_001041551.1| - 8.6e-07 29.7 0.1 1.9e-06 28.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|126466442|ref|YP_001041551.1| - 5.3e-06 26.0 1.2 0.00023 20.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126466442|ref|YP_001041551.1| - 6e-06 26.2 0.1 8.6e-06 25.7 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|126466442|ref|YP_001041551.1| - 0.0019 17.0 1.8 0.0019 16.9 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|126466442|ref|YP_001041551.1| - 0.0023 17.6 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|126466442|ref|YP_001041551.1| - 0.0058 16.6 1.0 0.044 13.7 0.1 2.2 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|126466442|ref|YP_001041551.1| - 0.0069 16.8 0.1 0.033 14.6 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|126466442|ref|YP_001041551.1| - 0.0086 15.7 0.2 0.045 13.4 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|126466442|ref|YP_001041551.1| - 0.011 15.1 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|126466442|ref|YP_001041551.1| - 0.016 14.3 0.0 0.027 13.5 0.0 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|126466442|ref|YP_001041551.1| - 0.017 15.4 0.3 0.041 14.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|126466442|ref|YP_001041551.1| - 0.019 13.8 0.3 0.056 12.2 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|126466442|ref|YP_001041551.1| - 0.029 14.1 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|126466442|ref|YP_001041551.1| - 0.047 13.3 0.0 0.097 12.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|126466442|ref|YP_001041551.1| - 0.062 12.5 4.0 0.3 10.2 4.0 1.9 1 1 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|126466442|ref|YP_001041551.1| - 0.069 13.1 1.6 0.14 12.1 1.6 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|126466442|ref|YP_001041551.1| - 0.094 13.1 1.5 0.62 10.4 1.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|126466442|ref|YP_001041551.1| - 0.11 12.9 0.2 0.18 12.2 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.6 gi|126466442|ref|YP_001041551.1| - 0.11 12.9 1.4 13 6.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|126466442|ref|YP_001041551.1| - 0.11 10.0 0.3 0.15 9.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SHS2_Rpb7-N PF03876.17 gi|126466442|ref|YP_001041551.1| - 0.13 12.7 0.0 0.32 11.4 0.0 2.0 1 1 0 1 1 1 0 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 Viral_helicase1 PF01443.18 gi|126466442|ref|YP_001041551.1| - 0.13 11.9 0.0 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|126466442|ref|YP_001041551.1| - 0.2 11.8 0.2 0.49 10.5 0.2 1.6 2 0 0 2 2 2 0 AAA domain DUF86 PF01934.17 gi|126466443|ref|YP_001041552.1| - 3.4e-17 62.4 0.0 4e-17 62.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|126466444|ref|YP_001041553.1| - 9.6e-11 41.6 0.0 1.6e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|126466444|ref|YP_001041553.1| - 7.5e-05 23.0 0.2 0.00013 22.2 0.2 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain ABC_tran PF00005.27 gi|126466448|ref|YP_001041557.1| - 3e-23 82.8 0.0 4.1e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|126466448|ref|YP_001041557.1| - 1.1e-15 58.3 2.4 1.4e-11 44.8 0.5 2.0 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|126466448|ref|YP_001041557.1| - 3.2e-08 33.3 0.4 5.4e-07 29.3 0.4 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|126466448|ref|YP_001041557.1| - 0.0016 18.3 0.5 1.2 8.7 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain cobW PF02492.19 gi|126466448|ref|YP_001041557.1| - 0.0022 17.6 0.0 0.0039 16.8 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|126466448|ref|YP_001041557.1| - 0.015 15.8 0.4 0.042 14.3 0.1 1.8 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|126466448|ref|YP_001041557.1| - 0.018 15.3 0.0 0.062 13.5 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ILEI PF15711.5 gi|126466448|ref|YP_001041557.1| - 0.019 15.4 0.0 0.057 13.9 0.0 1.8 2 0 0 2 2 2 0 Interleukin-like EMT inducer RsgA_GTPase PF03193.16 gi|126466448|ref|YP_001041557.1| - 0.026 14.4 0.2 0.057 13.3 0.2 1.5 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|126466448|ref|YP_001041557.1| - 0.033 14.3 0.1 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|126466448|ref|YP_001041557.1| - 0.053 12.6 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|126466448|ref|YP_001041557.1| - 0.2 11.4 0.1 0.35 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PIN PF01850.21 gi|126466449|ref|YP_001041558.1| - 4.6e-10 40.1 2.9 5.8e-10 39.7 2.9 1.1 1 0 0 1 1 1 1 PIN domain Snf7 PF03357.21 gi|126466450|ref|YP_001041559.1| - 0.036 13.7 0.1 0.048 13.3 0.2 1.3 1 1 0 1 1 1 0 Snf7 Lentiviral_Tat PF02998.14 gi|126466450|ref|YP_001041559.1| - 0.045 13.8 1.5 0.13 12.3 1.5 1.8 1 1 0 1 1 1 0 Lentiviral Tat protein DUF948 PF06103.11 gi|126466450|ref|YP_001041559.1| - 0.18 12.1 0.0 1.3 9.3 0.0 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF86 PF01934.17 gi|126466451|ref|YP_001041560.1| - 6.7e-15 55.0 0.2 7.7e-15 54.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF3336 PF11815.8 gi|126466451|ref|YP_001041560.1| - 0.0046 16.7 0.1 0.0049 16.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3336) FANCI_S2 PF14676.6 gi|126466451|ref|YP_001041560.1| - 0.023 15.0 0.0 0.089 13.1 0.0 1.7 1 1 1 2 2 2 0 FANCI solenoid 2 bPH_2 PF03703.14 gi|126466452|ref|YP_001041561.1| - 1.6e-07 31.4 0.1 2.5e-07 30.8 0.1 1.5 1 1 0 1 1 1 1 Bacterial PH domain Radical_SAM_C PF16199.5 gi|126466453|ref|YP_001041562.1| - 1.1e-25 89.5 1.5 1.7e-25 88.8 0.6 1.9 2 0 0 2 2 2 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|126466453|ref|YP_001041562.1| - 3.3e-23 82.9 0.0 9.9e-23 81.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|126466453|ref|YP_001041562.1| - 2.4e-07 31.0 0.4 6.2e-07 29.7 0.4 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|126466453|ref|YP_001041562.1| - 0.0053 16.7 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HobA PF12163.8 gi|126466453|ref|YP_001041562.1| - 0.016 14.8 0.0 0.026 14.1 0.0 1.2 1 0 0 1 1 1 0 DNA replication regulator Lactamase_B PF00753.27 gi|126466454|ref|YP_001041563.1| - 1.7e-05 24.9 0.2 0.00012 22.2 0.0 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|126466454|ref|YP_001041563.1| - 0.011 15.3 0.0 0.037 13.5 0.0 1.9 2 0 0 2 2 2 0 Beta-lactamase superfamily domain MoeA_N PF03453.17 gi|126466455|ref|YP_001041564.1| - 5.1e-38 130.3 0.1 7.6e-38 129.7 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126466455|ref|YP_001041564.1| - 4.2e-26 91.3 0.0 6.5e-26 90.7 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|126466455|ref|YP_001041564.1| - 3.1e-17 62.5 0.9 2.7e-16 59.5 0.0 2.9 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) PapC_C PF13953.6 gi|126466455|ref|YP_001041564.1| - 0.045 13.6 0.4 6.3 6.7 0.0 3.1 2 1 1 3 3 3 0 PapC C-terminal domain ABC2_membrane_3 PF12698.7 gi|126466456|ref|YP_001041565.1| - 0.034 13.3 4.6 0.037 13.1 4.6 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein CoatB PF10389.9 gi|126466456|ref|YP_001041565.1| - 0.09 12.6 0.6 0.18 11.7 0.6 1.4 1 0 0 1 1 1 0 Bacteriophage coat protein B TPR_1 PF00515.28 gi|126466457|ref|YP_001041566.1| - 2.1e-09 36.8 22.2 0.0013 18.5 3.8 5.8 6 0 0 6 6 5 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|126466457|ref|YP_001041566.1| - 3.8e-09 36.0 28.2 0.0028 17.6 0.4 7.5 7 0 0 7 7 7 3 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|126466457|ref|YP_001041566.1| - 0.0002 20.8 0.0 0.00046 19.7 0.0 1.5 1 0 0 1 1 1 1 MalT-like TPR region Sel1 PF08238.12 gi|126466457|ref|YP_001041566.1| - 0.00032 21.3 7.9 0.15 12.8 1.9 3.0 2 0 0 2 2 2 2 Sel1 repeat TPR_7 PF13176.6 gi|126466457|ref|YP_001041566.1| - 0.00064 19.6 5.7 0.98 9.6 0.6 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|126466457|ref|YP_001041566.1| - 0.0014 18.9 11.3 0.01 16.1 0.7 4.8 4 2 0 4 4 4 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|126466457|ref|YP_001041566.1| - 0.0037 17.3 24.3 0.2 11.9 2.7 5.8 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|126466457|ref|YP_001041566.1| - 0.0064 17.2 0.8 12 7.1 0.0 4.4 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|126466457|ref|YP_001041566.1| - 0.01 16.4 1.6 36 5.1 0.9 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|126466457|ref|YP_001041566.1| - 0.012 15.5 1.6 0.19 11.7 0.2 3.4 4 0 0 4 4 4 0 Tetratricopeptide repeat SNAP PF14938.6 gi|126466457|ref|YP_001041566.1| - 0.026 13.9 1.7 0.056 12.8 1.7 1.5 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP RST PF12174.8 gi|126466457|ref|YP_001041566.1| - 0.042 13.8 0.7 0.48 10.4 0.7 3.0 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain Fmp27_SW PF10305.9 gi|126466457|ref|YP_001041566.1| - 0.055 14.2 0.2 3.5 8.4 0.0 3.4 3 0 0 3 3 3 0 RNA pol II promoter Fmp27 protein domain TPR_19 PF14559.6 gi|126466457|ref|YP_001041566.1| - 0.37 11.3 2.2 10 6.7 0.0 3.9 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|126466457|ref|YP_001041566.1| - 0.61 10.8 21.7 4.4 8.1 0.2 6.0 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|126466457|ref|YP_001041566.1| - 0.79 10.2 5.7 24 5.6 0.2 4.7 5 0 0 5 5 5 0 Tetratricopeptide repeat ATP13 PF12921.7 gi|126466457|ref|YP_001041566.1| - 0.81 9.6 8.2 8.5 6.3 0.2 4.6 4 1 1 5 5 4 0 Mitochondrial ATPase expression Arabinose_Isome PF02610.15 gi|126466458|ref|YP_001041567.1| - 0.024 13.9 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 L-arabinose isomerase AIRS PF00586.24 gi|126466459|ref|YP_001041568.1| - 7e-16 58.7 0.0 1.3e-15 57.8 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DSPc PF00782.20 gi|126466460|ref|YP_001041569.1| - 1.5e-14 54.0 0.0 3.8e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain CDKN3 PF05706.12 gi|126466460|ref|YP_001041569.1| - 2.5e-06 27.3 0.0 4.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase PF00102.27 gi|126466460|ref|YP_001041569.1| - 0.0034 17.0 0.0 0.0064 16.1 0.0 1.4 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|126466460|ref|YP_001041569.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Inositol hexakisphosphate Rhodanese PF00581.20 gi|126466460|ref|YP_001041569.1| - 0.14 12.7 0.0 0.35 11.4 0.0 1.6 1 0 0 1 1 1 0 Rhodanese-like domain SNARE_assoc PF09335.11 gi|126466461|ref|YP_001041570.1| - 2.9e-12 47.1 6.2 2.9e-12 47.1 6.2 2.1 1 1 1 2 2 2 1 SNARE associated Golgi protein UPF0016 PF01169.19 gi|126466461|ref|YP_001041570.1| - 1.5 9.2 6.5 0.89 9.9 1.1 2.9 1 1 2 3 3 3 0 Uncharacterized protein family UPF0016 FeoA PF04023.14 gi|126466462|ref|YP_001041571.1| - 1.2e-18 67.2 0.0 1.3e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 FeoA domain UBA_5 PF16577.5 gi|126466462|ref|YP_001041571.1| - 0.027 14.6 0.0 0.035 14.3 0.0 1.3 1 0 0 1 1 1 0 UBA domain FeoB_N PF02421.18 gi|126466463|ref|YP_001041572.1| - 1.7e-51 173.8 0.0 2.9e-51 173.1 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|126466463|ref|YP_001041572.1| - 6.7e-25 87.5 28.5 1.1e-19 70.7 9.2 3.1 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|126466463|ref|YP_001041572.1| - 4.1e-21 75.2 0.0 8.3e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|126466463|ref|YP_001041572.1| - 7.4e-13 48.9 0.1 1.4e-12 48.0 0.1 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain GTP_EFTU PF00009.27 gi|126466463|ref|YP_001041572.1| - 3.9e-07 29.8 0.0 7.4e-05 22.4 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|126466463|ref|YP_001041572.1| - 2.1e-06 27.2 0.0 3.5e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 AIG1 family FeoB_C PF07664.12 gi|126466463|ref|YP_001041572.1| - 0.00025 20.7 0.7 0.00025 20.7 0.7 3.8 5 0 0 5 5 3 1 Ferrous iron transport protein B C terminus Dynamin_N PF00350.23 gi|126466463|ref|YP_001041572.1| - 0.0012 19.0 0.2 0.29 11.2 0.0 2.5 2 0 0 2 2 2 1 Dynamin family RsgA_GTPase PF03193.16 gi|126466463|ref|YP_001041572.1| - 0.0016 18.4 0.0 0.89 9.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|126466463|ref|YP_001041572.1| - 0.038 13.4 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MnmE_helical PF12631.7 gi|126466463|ref|YP_001041572.1| - 0.099 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 MnmE helical domain Sigma_reg_N PF13800.6 gi|126466464|ref|YP_001041573.1| - 0.096 13.0 3.7 0.22 11.8 3.7 1.6 1 0 0 1 1 1 0 Sigma factor regulator N-terminal AFOR_N PF02730.15 gi|126466465|ref|YP_001041574.1| - 4.1e-39 134.5 0.3 7.2e-39 133.7 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|126466465|ref|YP_001041574.1| - 1.8e-17 63.5 0.0 9e-17 61.1 0.0 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SNF2_assoc PF08455.10 gi|126466465|ref|YP_001041574.1| - 0.048 12.7 0.3 0.34 9.9 0.1 2.3 2 0 0 2 2 2 0 Bacterial SNF2 helicase associated DUF4346 PF14251.6 gi|126466466|ref|YP_001041575.1| - 3.3e-05 23.9 0.6 0.0023 18.0 0.1 2.7 2 1 1 3 3 3 2 Domain of unknown function (DUF4346) DUF4884 PF16225.5 gi|126466467|ref|YP_001041576.1| - 0.038 14.0 0.0 0.16 12.0 0.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4884) Glucodextran_C PF09985.9 gi|126466468|ref|YP_001041577.1| - 1.2e-155 515.6 12.1 5.1e-79 264.9 2.5 2.1 2 0 0 2 2 2 2 C-terminal binding-module, SLH-like, of glucodextranase Pex14_N PF04695.13 gi|126466468|ref|YP_001041577.1| - 0.19 12.4 20.9 0.051 14.2 16.1 2.1 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF1180 PF06679.12 gi|126466468|ref|YP_001041577.1| - 0.43 11.0 9.6 0.97 9.8 9.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Radical_SAM PF04055.21 gi|126466469|ref|YP_001041578.1| - 3.3e-21 76.4 0.0 5.4e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|126466469|ref|YP_001041578.1| - 2.3e-16 59.9 0.0 3.7e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|126466469|ref|YP_001041578.1| - 3.6e-07 30.5 0.0 1e-06 29.1 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|126466469|ref|YP_001041578.1| - 2.7e-06 27.5 0.0 7.5e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain MoaC PF01967.21 gi|126466470|ref|YP_001041579.1| - 1.5e-47 161.1 0.7 1.7e-47 161.0 0.7 1.0 1 0 0 1 1 1 1 MoaC family Sigma70_r2 PF04542.14 gi|126466470|ref|YP_001041579.1| - 0.073 12.8 0.0 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-70 region 2 tRNA-synt_1d PF00750.19 gi|126466471|ref|YP_001041580.1| - 3.6e-32 111.7 9.7 1.6e-20 73.4 3.3 2.4 1 1 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|126466471|ref|YP_001041580.1| - 2.8e-14 53.3 0.2 1.4e-13 51.0 0.2 2.4 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|126466471|ref|YP_001041580.1| - 0.00047 20.7 0.0 0.0038 17.8 0.0 2.5 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain ELMO_CED12 PF04727.13 gi|126466471|ref|YP_001041580.1| - 0.067 13.3 0.2 0.12 12.5 0.2 1.4 1 0 0 1 1 1 0 ELMO/CED-12 family PMBR PF09373.10 gi|126466471|ref|YP_001041580.1| - 0.19 12.0 5.7 0.27 11.5 0.1 3.9 3 0 0 3 3 3 0 Pseudomurein-binding repeat HTH_29 PF13551.6 gi|126466473|ref|YP_001041582.1| - 1.4e-06 28.2 0.0 0.0067 16.4 0.0 2.8 3 0 0 3 3 3 2 Winged helix-turn helix HTH_23 PF13384.6 gi|126466473|ref|YP_001041582.1| - 2.8e-06 26.9 2.3 2.6e-05 23.9 0.0 3.4 5 0 0 5 5 4 1 Homeodomain-like domain HTH_11 PF08279.12 gi|126466473|ref|YP_001041582.1| - 4.1e-06 26.6 0.5 0.0081 16.1 0.2 2.6 2 0 0 2 2 2 2 HTH domain HTH_5 PF01022.20 gi|126466473|ref|YP_001041582.1| - 1.4e-05 24.9 0.7 0.0063 16.4 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|126466473|ref|YP_001041582.1| - 2.6e-05 23.8 0.7 0.00017 21.2 0.0 2.5 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|126466473|ref|YP_001041582.1| - 3.1e-05 24.0 0.0 0.011 15.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|126466473|ref|YP_001041582.1| - 0.00012 21.6 0.6 0.34 10.5 0.0 3.2 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|126466473|ref|YP_001041582.1| - 0.00016 21.3 3.4 0.0011 18.7 0.0 2.9 3 0 0 3 3 3 1 Helix-turn-helix domain TnsD PF15978.5 gi|126466473|ref|YP_001041582.1| - 0.00036 19.6 0.6 0.0018 17.4 0.2 2.0 1 1 1 2 2 2 1 Tn7-like transposition protein D GerE PF00196.19 gi|126466473|ref|YP_001041582.1| - 0.0006 19.3 1.6 0.0094 15.5 0.1 3.0 3 1 0 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_10 PF04967.12 gi|126466473|ref|YP_001041582.1| - 0.00084 19.1 0.0 0.014 15.2 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain HTH_40 PF14493.6 gi|126466473|ref|YP_001041582.1| - 0.0012 19.2 0.8 0.0031 17.9 0.2 2.1 2 1 0 2 2 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|126466473|ref|YP_001041582.1| - 0.0013 18.6 0.0 0.0097 15.8 0.0 2.3 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) TrmB PF01978.19 gi|126466473|ref|YP_001041582.1| - 0.0017 18.2 0.2 0.6 10.0 0.1 3.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|126466473|ref|YP_001041582.1| - 0.0036 16.7 0.4 0.97 8.9 0.0 3.6 4 0 0 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 HeH PF12949.7 gi|126466473|ref|YP_001041582.1| - 0.004 16.8 0.8 0.012 15.3 0.2 2.1 2 0 0 2 2 2 1 HeH/LEM domain NUMOD1 PF07453.13 gi|126466473|ref|YP_001041582.1| - 0.017 15.4 1.6 0.98 9.8 0.6 2.4 2 0 0 2 2 2 0 NUMOD1 domain HTH_7 PF02796.15 gi|126466473|ref|YP_001041582.1| - 0.052 13.6 6.0 0.72 10.0 0.1 3.0 3 0 0 3 3 2 0 Helix-turn-helix domain of resolvase GLTSCR1 PF15249.6 gi|126466473|ref|YP_001041582.1| - 0.061 13.8 1.9 3.3 8.2 0.2 2.4 2 0 0 2 2 2 0 Conserved region of unknown function on GLTSCR protein Sigma70_r4 PF04545.16 gi|126466473|ref|YP_001041582.1| - 0.072 12.6 1.2 9 5.9 0.0 3.3 3 0 0 3 3 3 0 Sigma-70, region 4 UPF0175 PF03683.13 gi|126466473|ref|YP_001041582.1| - 0.076 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) HTH_3 PF01381.22 gi|126466473|ref|YP_001041582.1| - 0.13 12.4 0.9 1.7 8.7 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix Aminotran_3 PF00202.21 gi|126466474|ref|YP_001041583.1| - 1.1e-113 380.0 0.0 1.3e-113 379.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF364 PF04016.12 gi|126466476|ref|YP_001041585.1| - 8.1e-08 32.0 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation MoeA_N PF03453.17 gi|126466477|ref|YP_001041586.1| - 1e-30 106.6 0.0 1.4e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|126466477|ref|YP_001041586.1| - 2.1e-13 50.2 0.0 3.3e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|126466477|ref|YP_001041586.1| - 0.012 15.8 0.0 0.039 14.1 0.0 1.9 2 0 0 2 2 2 0 MoeA C-terminal region (domain IV) MFS_1 PF07690.16 gi|126466478|ref|YP_001041587.1| - 3.3e-14 52.6 32.5 4.6e-14 52.1 32.5 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily NIL PF09383.10 gi|126466478|ref|YP_001041587.1| - 0.12 12.3 0.8 12 5.8 0.0 2.8 3 0 0 3 3 3 0 NIL domain DUF2953 PF11167.8 gi|126466478|ref|YP_001041587.1| - 3.3 7.9 6.2 3.1 8.0 0.2 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2953) DeoC PF01791.9 gi|126466479|ref|YP_001041588.1| - 4.3e-37 128.0 0.0 5.9e-37 127.5 0.0 1.2 1 0 0 1 1 1 1 DeoC/LacD family aldolase Peripla_BP_6 PF13458.6 gi|126466479|ref|YP_001041588.1| - 0.067 12.8 0.1 0.29 10.7 0.0 2.0 1 1 0 2 2 2 0 Periplasmic binding protein His_biosynth PF00977.21 gi|126466479|ref|YP_001041588.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein CorA PF01544.18 gi|126466480|ref|YP_001041589.1| - 2e-36 125.8 0.8 2.5e-36 125.5 0.8 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein ACR_tran PF00873.19 gi|126466480|ref|YP_001041589.1| - 0.056 11.1 0.0 0.08 10.6 0.0 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family MMR_HSR1_Xtn PF16897.5 gi|126466480|ref|YP_001041589.1| - 0.069 13.2 1.0 0.11 12.5 0.3 1.8 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain Peptidase_M32 PF02074.15 gi|126466481|ref|YP_001041590.1| - 2e-162 541.4 1.3 2.3e-162 541.2 1.3 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase FCH PF00611.23 gi|126466482|ref|YP_001041591.1| - 0.1 12.9 0.1 0.12 12.7 0.1 1.1 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain ThiS PF02597.20 gi|126466483|ref|YP_001041592.1| - 5.7e-09 36.5 0.2 6.7e-09 36.3 0.2 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|126466483|ref|YP_001041592.1| - 0.033 14.2 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin Ub-Mut7C PF14451.6 gi|126466483|ref|YP_001041592.1| - 0.075 12.9 0.1 0.091 12.6 0.1 1.1 1 0 0 1 1 1 0 Mut7-C ubiquitin # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_marinus_F1_uid58719/NC_009033.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_marinus_F1_uid58719/NC_009033.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_marinus_F1_uid58719/NC_009033.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Staphylothermus_marinus_F1_uid58719/NC_009033.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:21:38 2019 # [ok]