# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|347522555|ref|YP_004780125.1| - 1.4e-25 89.1 0.2 3.2e-25 87.9 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|347522555|ref|YP_004780125.1| - 4e-14 53.1 0.0 8.4e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347522555|ref|YP_004780125.1| - 3.4e-13 50.3 1.1 9e-11 42.5 0.3 2.8 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|347522555|ref|YP_004780125.1| - 4.4e-07 30.1 0.3 1.9e-06 28.0 0.2 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|347522555|ref|YP_004780125.1| - 1.9e-06 28.3 0.0 5.1e-06 27.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|347522555|ref|YP_004780125.1| - 2.2e-06 27.2 0.0 4.8e-06 26.1 0.0 1.5 2 0 0 2 2 2 1 Bacterial TniB protein DUF2075 PF09848.9 gi|347522555|ref|YP_004780125.1| - 1.7e-05 24.3 0.0 2.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_32 PF13654.6 gi|347522555|ref|YP_004780125.1| - 7.9e-05 21.6 0.3 0.016 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_assoc_2 PF16193.5 gi|347522555|ref|YP_004780125.1| - 0.0027 18.0 0.2 0.012 16.0 0.1 2.1 2 0 0 2 2 2 1 AAA C-terminal domain AAA_5 PF07728.14 gi|347522555|ref|YP_004780125.1| - 0.01 15.8 0.1 0.03 14.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TIP49_C PF17856.1 gi|347522555|ref|YP_004780125.1| - 0.013 15.7 0.0 0.034 14.3 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain ResIII PF04851.15 gi|347522555|ref|YP_004780125.1| - 0.015 15.3 0.0 0.032 14.2 0.0 1.5 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit Creatinase_N_2 PF16189.5 gi|347522555|ref|YP_004780125.1| - 0.022 14.9 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 Creatinase/Prolidase N-terminal domain DEAD PF00270.29 gi|347522555|ref|YP_004780125.1| - 0.023 14.5 0.6 3.4 7.4 0.1 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase NB-ARC PF00931.22 gi|347522555|ref|YP_004780125.1| - 0.029 13.6 0.0 0.049 12.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Sigma54_activat PF00158.26 gi|347522555|ref|YP_004780125.1| - 0.044 13.5 0.0 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Kinesin PF00225.23 gi|347522555|ref|YP_004780125.1| - 0.046 12.6 0.0 0.099 11.5 0.0 1.4 2 0 0 2 2 2 0 Kinesin motor domain DUF815 PF05673.13 gi|347522555|ref|YP_004780125.1| - 0.059 12.5 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PCP_red PF08369.10 gi|347522555|ref|YP_004780125.1| - 0.065 13.5 0.7 0.69 10.2 0.1 2.9 3 0 0 3 3 2 0 Proto-chlorophyllide reductase 57 kD subunit TsaE PF02367.17 gi|347522555|ref|YP_004780125.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|347522555|ref|YP_004780125.1| - 0.12 12.1 0.0 16 5.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|347522555|ref|YP_004780125.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_7 PF12775.7 gi|347522555|ref|YP_004780125.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF99 PF01949.16 gi|347522556|ref|YP_004780126.1| - 4.4e-41 140.3 0.0 4.9e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 SNO PF01174.19 gi|347522557|ref|YP_004780127.1| - 5.6e-48 163.3 0.0 7.8e-48 162.8 0.0 1.1 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|347522557|ref|YP_004780127.1| - 8.4e-11 41.8 0.0 1.1e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|347522557|ref|YP_004780127.1| - 1.6e-07 31.2 0.0 2.1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|347522557|ref|YP_004780127.1| - 1.8e-05 24.6 0.1 2.7e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|347522557|ref|YP_004780127.1| - 0.0017 18.1 0.0 0.033 14.0 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase class-I BPL_N PF09825.9 gi|347522557|ref|YP_004780127.1| - 0.081 12.0 0.0 1.5 7.8 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal PAPS_reduct PF01507.19 gi|347522559|ref|YP_004780129.1| - 4.7e-16 59.3 0.0 7.6e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.27 gi|347522559|ref|YP_004780129.1| - 0.00018 21.1 14.3 0.00049 19.8 4.9 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347522559|ref|YP_004780129.1| - 0.00066 20.1 4.0 0.043 14.3 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347522559|ref|YP_004780129.1| - 0.0022 18.6 10.7 0.93 10.1 12.9 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347522559|ref|YP_004780129.1| - 0.017 15.2 12.2 0.45 10.7 14.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347522559|ref|YP_004780129.1| - 0.022 15.7 4.3 0.022 15.7 4.3 2.7 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain ATP_bind_3 PF01171.20 gi|347522559|ref|YP_004780129.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Baculo_LEF-2 PF03041.14 gi|347522559|ref|YP_004780129.1| - 0.11 12.1 0.8 1.2 8.7 0.3 2.2 2 0 0 2 2 2 0 lef-2 Fer4_17 PF13534.6 gi|347522559|ref|YP_004780129.1| - 0.17 12.5 8.3 0.22 12.1 0.9 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain tRNA_Me_trans PF03054.16 gi|347522559|ref|YP_004780129.1| - 0.22 10.3 0.0 0.33 9.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Fer4_21 PF14697.6 gi|347522559|ref|YP_004780129.1| - 0.43 10.8 15.9 0.15 12.2 4.4 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|347522559|ref|YP_004780129.1| - 0.53 10.5 15.0 2.4 8.4 2.3 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|347522559|ref|YP_004780129.1| - 1.3 9.7 18.5 0.1 13.1 4.3 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347522559|ref|YP_004780129.1| - 2.5 8.3 15.4 6.7 7.0 5.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347522559|ref|YP_004780129.1| - 2.7 8.2 18.7 0.14 12.4 3.9 2.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|347522559|ref|YP_004780129.1| - 5.2 7.3 11.7 26 5.1 11.7 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Oxidored_q6 PF01058.22 gi|347522560|ref|YP_004780130.1| - 8.8e-15 54.7 0.1 1.1e-14 54.4 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit SWIM PF04434.17 gi|347522561|ref|YP_004780131.1| - 0.0095 15.6 0.8 0.045 13.4 0.8 2.0 1 1 0 1 1 1 1 SWIM zinc finger AP_endonuc_2 PF01261.24 gi|347522562|ref|YP_004780132.1| - 2.2e-09 37.1 0.1 3.4e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel LamB_YcsF PF03746.16 gi|347522562|ref|YP_004780132.1| - 0.14 11.8 0.0 0.28 10.8 0.0 1.4 2 0 0 2 2 2 0 LamB/YcsF family Glycos_transf_2 PF00535.26 gi|347522563|ref|YP_004780133.1| - 2e-33 115.6 0.0 2.9e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|347522563|ref|YP_004780133.1| - 1.6e-20 73.5 8.0 2.5e-20 72.9 8.0 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|347522563|ref|YP_004780133.1| - 7.9e-11 42.3 0.0 1.2e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|347522563|ref|YP_004780133.1| - 0.00044 20.7 0.0 0.0029 18.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|347522563|ref|YP_004780133.1| - 0.0058 16.1 0.0 0.015 14.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|347522563|ref|YP_004780133.1| - 0.011 15.2 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 ATPase_2 PF01637.18 gi|347522564|ref|YP_004780134.1| - 6.4e-10 39.3 0.0 2.5e-05 24.3 0.0 2.5 1 1 2 3 3 3 2 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347522564|ref|YP_004780134.1| - 6.3e-06 26.7 1.5 6.8e-05 23.3 1.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|347522564|ref|YP_004780134.1| - 2.5e-05 24.1 0.0 4.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347522564|ref|YP_004780134.1| - 3.2e-05 24.2 0.1 9.3e-05 22.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|347522564|ref|YP_004780134.1| - 0.00041 20.9 0.0 0.00064 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347522564|ref|YP_004780134.1| - 0.00045 20.6 0.0 0.001 19.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|347522564|ref|YP_004780134.1| - 0.00048 20.0 0.0 0.2 11.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|347522564|ref|YP_004780134.1| - 0.00093 18.8 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|347522564|ref|YP_004780134.1| - 0.00097 19.7 0.0 0.0021 18.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_14 PF13173.6 gi|347522564|ref|YP_004780134.1| - 0.0039 17.2 0.0 0.0052 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347522564|ref|YP_004780134.1| - 0.008 15.9 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|347522564|ref|YP_004780134.1| - 0.009 15.6 0.2 0.019 14.6 0.2 1.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|347522564|ref|YP_004780134.1| - 0.0099 15.3 0.1 0.016 14.6 0.1 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|347522564|ref|YP_004780134.1| - 0.01 15.8 0.1 0.022 14.8 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|347522564|ref|YP_004780134.1| - 0.011 16.1 0.0 0.021 15.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|347522564|ref|YP_004780134.1| - 0.011 15.5 0.1 0.13 12.0 0.1 2.1 1 1 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|347522564|ref|YP_004780134.1| - 0.012 15.5 0.3 0.052 13.5 0.3 2.0 1 1 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|347522564|ref|YP_004780134.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|347522564|ref|YP_004780134.1| - 0.014 14.8 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_35 PF14516.6 gi|347522564|ref|YP_004780134.1| - 0.019 13.8 0.0 0.041 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain T2SSE PF00437.20 gi|347522564|ref|YP_004780134.1| - 0.025 13.7 0.0 0.063 12.3 0.0 1.6 2 0 0 2 2 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|347522564|ref|YP_004780134.1| - 0.028 14.6 0.0 0.053 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|347522564|ref|YP_004780134.1| - 0.031 14.2 0.1 0.06 13.3 0.1 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|347522564|ref|YP_004780134.1| - 0.054 13.5 0.3 0.098 12.7 0.2 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|347522564|ref|YP_004780134.1| - 0.074 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF853 PF05872.12 gi|347522564|ref|YP_004780134.1| - 0.086 11.4 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AAA_28 PF13521.6 gi|347522564|ref|YP_004780134.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|347522564|ref|YP_004780134.1| - 0.12 12.0 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|347522564|ref|YP_004780134.1| - 0.15 12.7 0.0 0.3 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|347522564|ref|YP_004780134.1| - 0.16 10.6 0.0 0.22 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|347522564|ref|YP_004780134.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|347522564|ref|YP_004780134.1| - 0.17 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 NTPase MobB PF03205.14 gi|347522564|ref|YP_004780134.1| - 0.18 11.7 0.1 0.32 10.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.13 gi|347522564|ref|YP_004780134.1| - 0.19 10.8 0.2 1.3 8.1 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) KTI12 PF08433.10 gi|347522564|ref|YP_004780134.1| - 0.21 11.0 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_7 PF12775.7 gi|347522564|ref|YP_004780134.1| - 0.26 10.8 0.0 0.45 10.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PIN_5 PF08745.11 gi|347522565|ref|YP_004780135.1| - 2.8e-77 258.8 3.0 3.2e-77 258.6 3.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease PIN_4 PF13638.6 gi|347522565|ref|YP_004780135.1| - 0.021 15.1 0.9 0.13 12.6 0.3 2.3 2 1 0 2 2 2 0 PIN domain TetR_C_11 PF16859.5 gi|347522565|ref|YP_004780135.1| - 0.34 11.2 5.5 6.8 7.0 1.6 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF357 PF04010.13 gi|347522566|ref|YP_004780136.1| - 9.7e-20 70.4 0.9 1.6e-19 69.8 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|347522566|ref|YP_004780136.1| - 6.1e-12 45.9 0.0 9.3e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase-like FrhB_FdhB_N PF04422.13 gi|347522566|ref|YP_004780136.1| - 0.021 14.9 0.0 0.28 11.3 0.0 2.2 2 0 0 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term FAD_syn PF06574.12 gi|347522566|ref|YP_004780136.1| - 0.073 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase Radical_SAM PF04055.21 gi|347522567|ref|YP_004780137.1| - 4.1e-10 40.3 0.0 6.6e-09 36.4 0.0 2.3 1 1 1 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|347522567|ref|YP_004780137.1| - 7.5e-07 29.3 0.0 1.8e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|347522567|ref|YP_004780137.1| - 5.6e-06 26.0 0.1 1.3e-05 24.8 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|347522567|ref|YP_004780137.1| - 0.00013 22.5 0.0 0.0013 19.3 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|347522567|ref|YP_004780137.1| - 0.0081 16.2 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|347522567|ref|YP_004780137.1| - 0.16 12.4 0.0 0.44 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF1028 PF06267.12 gi|347522568|ref|YP_004780138.1| - 7.5e-66 221.6 0.4 8.4e-66 221.4 0.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) DUF3731 PF12531.8 gi|347522568|ref|YP_004780138.1| - 0.14 11.9 0.1 0.2 11.4 0.1 1.1 1 0 0 1 1 1 0 DNA-K related protein DUF5622 PF18533.1 gi|347522569|ref|YP_004780139.1| - 8.2e-27 93.2 4.5 9e-27 93.0 4.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) Radical_SAM PF04055.21 gi|347522570|ref|YP_004780140.1| - 1e-14 55.3 0.0 1.9e-14 54.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily GCD14 PF08704.10 gi|347522571|ref|YP_004780141.1| - 1e-27 97.4 0.0 7.7e-27 94.5 0.0 1.9 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|347522571|ref|YP_004780141.1| - 7.8e-15 55.0 0.0 1.3e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|347522571|ref|YP_004780141.1| - 1.3e-12 48.0 0.0 2e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|347522571|ref|YP_004780141.1| - 1.4e-10 41.7 0.0 3e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347522571|ref|YP_004780141.1| - 2.6e-10 40.8 0.0 5.4e-10 39.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|347522571|ref|YP_004780141.1| - 2.7e-07 30.3 0.0 1.1e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|347522571|ref|YP_004780141.1| - 7.5e-07 28.7 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|347522571|ref|YP_004780141.1| - 2.2e-06 28.6 0.5 6.8e-06 27.1 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain GCD14_N PF14801.6 gi|347522571|ref|YP_004780141.1| - 4.5e-06 26.4 0.1 1.2e-05 25.0 0.1 1.8 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_18 PF12847.7 gi|347522571|ref|YP_004780141.1| - 1.9e-05 24.6 0.0 3.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|347522571|ref|YP_004780141.1| - 5.9e-05 22.3 0.0 8.7e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_12 PF08242.12 gi|347522571|ref|YP_004780141.1| - 0.00015 22.5 0.0 0.00042 21.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|347522571|ref|YP_004780141.1| - 0.00039 19.9 0.0 0.00047 19.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|347522571|ref|YP_004780141.1| - 0.0041 16.8 0.0 0.0082 15.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltr_RsmB-F PF01189.17 gi|347522571|ref|YP_004780141.1| - 0.0044 16.7 0.0 0.0095 15.6 0.0 1.4 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|347522571|ref|YP_004780141.1| - 0.0076 16.1 0.0 1.7 8.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|347522571|ref|YP_004780141.1| - 0.016 15.2 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|347522571|ref|YP_004780141.1| - 0.028 14.2 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein AviRa PF11599.8 gi|347522571|ref|YP_004780141.1| - 0.033 13.6 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa US22 PF02393.16 gi|347522571|ref|YP_004780141.1| - 0.039 14.2 0.1 0.088 13.1 0.0 1.6 2 0 0 2 2 1 0 US22 like RrnaAD PF00398.20 gi|347522571|ref|YP_004780141.1| - 0.056 12.5 0.0 0.28 10.2 0.0 1.8 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 gi|347522571|ref|YP_004780141.1| - 0.15 11.7 0.0 0.32 10.6 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical protein 95 ADP_ribosyl_GH PF03747.14 gi|347522571|ref|YP_004780141.1| - 0.17 11.6 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylglycohydrolase Herpes_UL3 PF03369.13 gi|347522572|ref|YP_004780142.1| - 0.025 15.1 0.2 0.041 14.4 0.2 1.4 1 0 0 1 1 1 0 Herpesvirus UL3 protein zf-PHD-like PF15446.6 gi|347522572|ref|YP_004780142.1| - 0.27 10.8 0.0 0.34 10.5 0.0 1.1 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain Methyltr_RsmB-F PF01189.17 gi|347522574|ref|YP_004780144.1| - 1.7e-61 207.4 0.0 2.5e-61 206.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|347522574|ref|YP_004780144.1| - 1.2e-09 38.5 0.0 2.5e-08 34.3 0.0 2.6 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|347522574|ref|YP_004780144.1| - 2.9e-09 36.9 0.0 5.5e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|347522574|ref|YP_004780144.1| - 1.9e-07 31.4 0.0 3.4e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|347522574|ref|YP_004780144.1| - 5e-05 23.9 0.3 0.022 15.5 0.0 3.0 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347522574|ref|YP_004780144.1| - 8.7e-05 23.1 0.0 0.00056 20.5 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|347522574|ref|YP_004780144.1| - 0.00017 21.0 0.1 0.018 14.4 0.1 2.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_5 PF01795.19 gi|347522574|ref|YP_004780144.1| - 0.00075 19.1 0.1 0.03 13.8 0.0 2.7 3 0 0 3 3 3 1 MraW methylase family DUF3801 PF12687.7 gi|347522574|ref|YP_004780144.1| - 0.002 18.2 0.0 0.0048 17.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3801) Met_10 PF02475.16 gi|347522574|ref|YP_004780144.1| - 0.0031 17.3 0.0 0.0052 16.5 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein GCD14 PF08704.10 gi|347522574|ref|YP_004780144.1| - 0.0062 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.17 gi|347522574|ref|YP_004780144.1| - 0.088 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin N6_Mtase PF02384.16 gi|347522574|ref|YP_004780144.1| - 0.14 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase TrmB PF01978.19 gi|347522575|ref|YP_004780145.1| - 0.029 14.3 0.2 0.04 13.8 0.2 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Radical_SAM_C PF16199.5 gi|347522575|ref|YP_004780145.1| - 0.11 12.6 0.2 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 Radical_SAM C-terminal domain Pyr_redox_2 PF07992.14 gi|347522577|ref|YP_004780147.1| - 1.4e-53 182.1 1.2 1.6e-53 181.8 1.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|347522577|ref|YP_004780147.1| - 3.8e-29 101.9 0.6 2.1e-23 83.0 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|347522577|ref|YP_004780147.1| - 8.7e-19 67.9 2.9 1.6e-14 54.2 0.2 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|347522577|ref|YP_004780147.1| - 5.5e-13 49.0 1.6 5.6e-08 32.6 0.0 3.2 3 0 0 3 3 3 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|347522577|ref|YP_004780147.1| - 2.8e-10 39.9 12.7 1.3e-05 24.5 1.1 4.6 2 2 3 5 5 5 3 FAD binding domain FAD_binding_3 PF01494.19 gi|347522577|ref|YP_004780147.1| - 3.6e-07 29.8 0.7 0.0067 15.7 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.22 gi|347522577|ref|YP_004780147.1| - 3.8e-07 29.5 16.2 4.8e-05 22.6 0.8 4.9 3 2 1 5 5 5 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|347522577|ref|YP_004780147.1| - 5.7e-07 29.0 0.5 0.00024 20.5 0.1 2.3 2 0 0 2 2 2 2 Thi4 family K_oxygenase PF13434.6 gi|347522577|ref|YP_004780147.1| - 1.9e-06 27.3 0.1 0.0016 17.7 0.0 3.0 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|347522577|ref|YP_004780147.1| - 1.1e-05 24.4 2.8 0.0011 17.8 0.7 3.0 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|347522577|ref|YP_004780147.1| - 1.8e-05 24.9 4.3 0.0047 17.1 0.1 3.0 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|347522577|ref|YP_004780147.1| - 2.8e-05 24.5 2.0 0.0099 16.3 0.4 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|347522577|ref|YP_004780147.1| - 0.00027 20.7 9.1 0.0068 16.0 2.6 3.1 2 1 1 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|347522577|ref|YP_004780147.1| - 0.0018 17.2 3.5 0.022 13.6 1.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|347522577|ref|YP_004780147.1| - 0.011 15.7 4.2 2.5 8.1 0.0 3.3 3 1 0 3 3 3 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|347522577|ref|YP_004780147.1| - 0.016 14.5 0.5 0.91 8.8 0.2 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|347522577|ref|YP_004780147.1| - 0.039 13.0 0.8 0.11 11.6 0.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|347522577|ref|YP_004780147.1| - 0.07 13.2 0.1 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase UCR_TM PF02921.14 gi|347522577|ref|YP_004780147.1| - 6.4 7.3 6.2 2.5 8.6 0.1 2.7 3 0 0 3 3 2 0 Ubiquinol cytochrome reductase transmembrane region DUF4423 PF14394.6 gi|347522578|ref|YP_004780148.1| - 0.0022 17.8 0.0 0.0028 17.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|347522578|ref|YP_004780148.1| - 0.005 16.7 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|347522578|ref|YP_004780148.1| - 0.0079 16.3 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain ANAPC2 PF08672.11 gi|347522578|ref|YP_004780148.1| - 0.02 15.4 0.2 0.18 12.4 0.0 2.5 1 1 2 3 3 3 0 Anaphase promoting complex (APC) subunit 2 Penicillinase_R PF03965.16 gi|347522578|ref|YP_004780148.1| - 0.054 13.9 0.0 0.075 13.4 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.20 gi|347522578|ref|YP_004780148.1| - 0.058 13.3 0.2 0.15 12.0 0.2 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|347522578|ref|YP_004780148.1| - 0.06 13.0 0.2 0.1 12.3 0.2 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|347522578|ref|YP_004780148.1| - 0.085 13.1 0.1 0.27 11.5 0.1 1.8 1 1 1 2 2 2 0 PaaX-like protein Peptidase_S80 PF07230.11 gi|347522578|ref|YP_004780148.1| - 0.092 11.0 0.1 0.11 10.8 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage T4-like capsid assembly protein (Gp20) Glyco_trans_1_2 PF13524.6 gi|347522578|ref|YP_004780148.1| - 0.11 13.0 0.2 0.49 10.8 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferases group 1 DUF4258 PF14076.6 gi|347522578|ref|YP_004780148.1| - 0.15 12.4 0.3 0.35 11.3 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4258) Striatin PF08232.12 gi|347522579|ref|YP_004780149.1| - 0.0086 16.7 0.1 0.011 16.3 0.1 1.2 1 0 0 1 1 1 1 Striatin family DUF883 PF05957.13 gi|347522579|ref|YP_004780149.1| - 0.07 13.7 0.1 0.18 12.4 0.0 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) GCP_C_terminal PF04130.13 gi|347522579|ref|YP_004780149.1| - 0.07 12.6 0.0 0.087 12.3 0.0 1.1 1 0 0 1 1 1 0 Gamma tubulin complex component C-terminal Peptidase_M24 PF00557.24 gi|347522580|ref|YP_004780150.1| - 9.6e-52 175.7 0.2 1.2e-51 175.4 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|347522580|ref|YP_004780150.1| - 7.1e-07 29.9 0.0 1.3e-06 29.1 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain GHMP_kinases_C PF08544.13 gi|347522581|ref|YP_004780151.1| - 0.0003 21.1 0.1 0.0007 19.9 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal NfeD PF01957.18 gi|347522581|ref|YP_004780151.1| - 0.014 15.8 0.3 0.16 12.4 0.1 2.4 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding PPR_1 PF12854.7 gi|347522581|ref|YP_004780151.1| - 0.02 14.6 0.5 0.7 9.6 0.1 2.6 2 0 0 2 2 2 0 PPR repeat GHMP_kinases_N PF00288.26 gi|347522581|ref|YP_004780151.1| - 0.093 13.0 0.2 0.26 11.5 0.1 1.7 2 0 0 2 2 2 0 GHMP kinases N terminal domain TusA PF01206.17 gi|347522583|ref|YP_004780153.1| - 0.053 13.4 0.0 0.062 13.1 0.0 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA Fer4_8 PF13183.6 gi|347522584|ref|YP_004780154.1| - 3.2e-10 40.3 5.1 3.2e-10 40.3 5.1 2.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347522584|ref|YP_004780154.1| - 2.2e-08 34.5 4.9 2.2e-08 34.5 4.9 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347522584|ref|YP_004780154.1| - 9.2e-06 25.7 18.6 9.7e-05 22.4 8.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347522584|ref|YP_004780154.1| - 2.9e-05 24.5 6.5 2.9e-05 24.5 6.5 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|347522584|ref|YP_004780154.1| - 3.2e-05 23.8 21.2 0.00088 19.2 2.8 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347522584|ref|YP_004780154.1| - 6.8e-05 23.0 7.1 6.8e-05 23.0 7.1 3.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347522584|ref|YP_004780154.1| - 0.017 14.9 4.4 0.017 14.9 4.4 3.2 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|347522584|ref|YP_004780154.1| - 0.019 15.9 10.0 0.019 15.9 10.0 2.9 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|347522584|ref|YP_004780154.1| - 0.022 15.2 2.8 0.022 15.2 2.8 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347522584|ref|YP_004780154.1| - 0.027 14.6 3.5 0.027 14.6 3.5 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|347522584|ref|YP_004780154.1| - 0.029 14.6 7.3 0.6 10.3 0.5 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347522584|ref|YP_004780154.1| - 0.044 14.7 5.4 0.044 14.7 5.4 4.0 5 0 0 5 5 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347522584|ref|YP_004780154.1| - 2.9 8.1 15.7 0.9 9.7 0.8 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|347522584|ref|YP_004780154.1| - 3.4 8.5 6.5 3.8 8.3 0.5 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Dimerisation PF08100.11 gi|347522585|ref|YP_004780155.1| - 0.0028 17.6 0.0 0.0045 17.0 0.0 1.2 1 0 0 1 1 1 1 Dimerisation domain Bromodomain PF00439.25 gi|347522585|ref|YP_004780155.1| - 0.072 13.2 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Bromodomain Hist_deacetyl PF00850.19 gi|347522586|ref|YP_004780156.1| - 5.4e-79 265.8 0.0 7.7e-79 265.3 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain MCM PF00493.23 gi|347522587|ref|YP_004780157.1| - 2.3e-99 331.1 0.0 6.9e-99 329.5 0.0 1.7 2 0 0 2 2 2 1 MCM P-loop domain MCM_OB PF17207.3 gi|347522587|ref|YP_004780157.1| - 3.2e-36 124.0 0.0 5.5e-36 123.2 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|347522587|ref|YP_004780157.1| - 4.1e-29 100.9 1.5 9.6e-29 99.7 1.5 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|347522587|ref|YP_004780157.1| - 1.6e-19 70.4 0.3 5.5e-19 68.7 0.3 2.0 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|347522587|ref|YP_004780157.1| - 7.1e-09 35.8 0.0 1.8e-07 31.2 0.0 2.9 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|347522587|ref|YP_004780157.1| - 2.9e-08 33.4 0.1 6.5e-05 22.4 0.0 2.6 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|347522587|ref|YP_004780157.1| - 4.5e-06 26.5 0.0 9.2e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AbiEi_4 PF13338.6 gi|347522587|ref|YP_004780157.1| - 0.00013 22.0 0.0 0.0011 19.1 0.0 2.7 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin Mnd1 PF03962.15 gi|347522587|ref|YP_004780157.1| - 0.00019 21.6 0.0 0.00045 20.4 0.0 1.6 1 0 0 1 1 1 1 Mnd1 HTH domain EAP30 PF04157.16 gi|347522587|ref|YP_004780157.1| - 0.00044 19.6 0.6 0.00091 18.6 0.2 1.7 2 0 0 2 2 2 1 EAP30/Vps36 family Sigma54_activat PF00158.26 gi|347522587|ref|YP_004780157.1| - 0.00099 18.9 0.1 0.0045 16.7 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF3987 PF13148.6 gi|347522587|ref|YP_004780157.1| - 0.0016 17.6 0.6 0.11 11.5 0.5 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3987) AAA_lid_2 PF17863.1 gi|347522587|ref|YP_004780157.1| - 0.002 17.9 1.7 0.0075 16.1 1.7 1.9 1 0 0 1 1 1 1 AAA lid domain RPA_C PF08784.11 gi|347522587|ref|YP_004780157.1| - 0.01 16.5 0.0 0.021 15.4 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal RibD_C PF01872.17 gi|347522587|ref|YP_004780157.1| - 0.033 14.0 0.3 7 6.4 0.1 2.4 2 0 0 2 2 2 0 RibD C-terminal domain AAA PF00004.29 gi|347522587|ref|YP_004780157.1| - 0.068 13.6 0.5 0.36 11.3 0.2 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|347522587|ref|YP_004780157.1| - 0.13 12.0 0.5 0.73 9.6 0.5 2.0 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Zn-ribbon_8 PF09723.10 gi|347522587|ref|YP_004780157.1| - 0.14 12.3 0.5 0.31 11.2 0.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_7 PF12775.7 gi|347522587|ref|YP_004780157.1| - 0.14 11.7 0.1 1.5 8.3 0.0 2.5 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|347522587|ref|YP_004780157.1| - 0.16 12.3 0.7 0.82 10.0 0.7 2.4 1 1 0 1 1 1 0 AAA ATPase domain Uteroglobin PF01099.17 gi|347522587|ref|YP_004780157.1| - 0.27 11.6 0.6 20 5.6 0.0 3.6 4 0 0 4 4 4 0 Uteroglobin family Helicase_C PF00271.31 gi|347522589|ref|YP_004780159.1| - 8.3e-15 55.1 0.8 3.4e-14 53.1 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|347522589|ref|YP_004780159.1| - 1.9e-14 53.8 0.0 3.3e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Radical_SAM PF04055.21 gi|347522591|ref|YP_004780161.1| - 4.6e-21 75.9 0.2 3.5e-20 73.1 0.1 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|347522591|ref|YP_004780161.1| - 0.0023 18.0 0.0 0.004 17.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Oxidored_q6 PF01058.22 gi|347522592|ref|YP_004780162.1| - 4.8e-22 78.2 0.0 1.1e-21 77.0 0.0 1.6 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF4941 PF16299.5 gi|347522593|ref|YP_004780163.1| - 0.043 13.1 0.2 0.056 12.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4941) DHHA1 PF02272.19 gi|347522594|ref|YP_004780164.1| - 3.3e-06 27.6 0.1 9.9e-05 22.8 0.0 2.7 3 0 0 3 3 3 1 DHHA1 domain Metallophos_2 PF12850.7 gi|347522596|ref|YP_004780166.1| - 1.8e-29 103.0 0.0 2.1e-29 102.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|347522596|ref|YP_004780166.1| - 2.8e-06 28.0 0.3 0.0017 18.9 0.3 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase baeRF_family10 PF18854.1 gi|347522596|ref|YP_004780166.1| - 0.049 13.9 0.3 0.14 12.4 0.1 1.8 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 AAA_17 PF13207.6 gi|347522597|ref|YP_004780167.1| - 6.1e-21 75.3 0.0 7.6e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|347522597|ref|YP_004780167.1| - 6e-13 49.5 0.0 8.1e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|347522597|ref|YP_004780167.1| - 4.6e-09 36.6 0.0 7.5e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347522597|ref|YP_004780167.1| - 0.0013 19.1 0.0 0.43 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|347522597|ref|YP_004780167.1| - 0.017 15.6 0.1 0.041 14.3 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|347522597|ref|YP_004780167.1| - 0.023 14.6 0.9 0.89 9.4 0.0 2.3 1 1 1 2 2 2 0 NTPase Zeta_toxin PF06414.12 gi|347522597|ref|YP_004780167.1| - 0.034 13.4 0.2 0.1 11.9 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin ADK PF00406.22 gi|347522597|ref|YP_004780167.1| - 0.035 14.2 0.0 0.046 13.8 0.0 1.3 1 0 0 1 1 1 0 Adenylate kinase CoaE PF01121.20 gi|347522597|ref|YP_004780167.1| - 0.04 13.6 0.0 0.51 10.0 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase PGM_PMM_II PF02879.16 gi|347522597|ref|YP_004780167.1| - 0.05 14.2 0.0 0.086 13.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RNA_binding PF01877.17 gi|347522598|ref|YP_004780168.1| - 4.3e-18 65.7 0.0 5.1e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 RNA binding Kdo PF06293.14 gi|347522599|ref|YP_004780169.1| - 1.9e-06 27.4 0.0 2.1e-05 24.0 0.0 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|347522599|ref|YP_004780169.1| - 5.7e-06 26.4 6.0 0.0014 18.6 0.1 2.9 2 1 1 3 3 3 2 Phosphotransferase enzyme family RIO1 PF01163.22 gi|347522599|ref|YP_004780169.1| - 0.00015 21.5 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.11 gi|347522599|ref|YP_004780169.1| - 0.0063 16.2 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) NTP_transf_3 PF12804.7 gi|347522600|ref|YP_004780170.1| - 5.4e-13 49.6 0.0 6.3e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|347522600|ref|YP_004780170.1| - 0.00057 19.7 0.0 0.00096 19.0 0.0 1.4 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDP-OH_P_transf PF01066.21 gi|347522601|ref|YP_004780171.1| - 1.1e-13 51.7 0.7 1.1e-13 51.7 0.7 2.2 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF5379 PF17350.2 gi|347522601|ref|YP_004780171.1| - 0.28 11.5 4.0 1.1 9.6 0.1 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5379) DUF2153 PF09921.9 gi|347522602|ref|YP_004780172.1| - 3.3e-55 185.2 7.2 3.7e-55 185.0 7.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF1912 PF08930.10 gi|347522602|ref|YP_004780172.1| - 0.012 15.7 1.3 0.54 10.4 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1912) Cas_Cmr3 PF09700.10 gi|347522602|ref|YP_004780172.1| - 0.091 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr3) DHH PF01368.20 gi|347522603|ref|YP_004780173.1| - 2.4e-15 56.6 0.0 3.8e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|347522603|ref|YP_004780173.1| - 6.7e-13 49.2 3.2 3.7e-11 43.6 2.0 2.4 2 0 0 2 2 2 2 DHHA1 domain Prefoldin_2 PF01920.20 gi|347522605|ref|YP_004780175.1| - 7e-19 67.7 16.0 8.6e-19 67.5 16.0 1.1 1 0 0 1 1 1 1 Prefoldin subunit FliJ PF02050.16 gi|347522605|ref|YP_004780175.1| - 0.0035 17.5 9.6 0.021 15.0 1.6 2.3 2 0 0 2 2 2 1 Flagellar FliJ protein Prefoldin PF02996.17 gi|347522605|ref|YP_004780175.1| - 0.005 16.8 11.4 0.17 11.8 3.2 2.2 1 1 1 2 2 2 2 Prefoldin subunit Spc7 PF08317.11 gi|347522605|ref|YP_004780175.1| - 0.012 14.5 12.5 0.017 14.0 12.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2884 PF11101.8 gi|347522605|ref|YP_004780175.1| - 0.019 14.5 3.4 0.037 13.5 3.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) DUF4407 PF14362.6 gi|347522605|ref|YP_004780175.1| - 0.035 13.5 3.3 0.044 13.1 3.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF5578 PF17741.1 gi|347522605|ref|YP_004780175.1| - 0.054 12.9 4.1 0.12 11.7 1.1 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5578) Pox_F11 PF04943.12 gi|347522605|ref|YP_004780175.1| - 0.055 12.5 6.1 0.067 12.3 6.1 1.1 1 0 0 1 1 1 0 Poxvirus F11 protein FlaC_arch PF05377.11 gi|347522605|ref|YP_004780175.1| - 0.082 13.3 1.3 0.082 13.3 1.3 2.9 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) HD_3 PF13023.6 gi|347522605|ref|YP_004780175.1| - 0.087 12.7 2.4 0.11 12.4 2.4 1.2 1 0 0 1 1 1 0 HD domain Spc24 PF08286.11 gi|347522605|ref|YP_004780175.1| - 0.095 13.0 13.2 0.82 9.9 4.3 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Caps_synth_GfcC PF06251.11 gi|347522605|ref|YP_004780175.1| - 0.1 12.2 2.8 0.13 11.9 2.8 1.2 1 0 0 1 1 1 0 Capsule biosynthesis GfcC DUF2913 PF11140.8 gi|347522605|ref|YP_004780175.1| - 0.22 11.3 5.6 0.7 9.6 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2913) GAS PF13851.6 gi|347522605|ref|YP_004780175.1| - 0.22 10.9 15.6 0.73 9.2 3.5 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding ZapB PF06005.12 gi|347522605|ref|YP_004780175.1| - 0.4 11.2 22.7 0.49 10.9 8.0 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF2935 PF11155.8 gi|347522605|ref|YP_004780175.1| - 0.46 10.8 2.9 9.5 6.6 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) SlyX PF04102.12 gi|347522605|ref|YP_004780175.1| - 0.54 10.9 13.7 0.43 11.2 3.7 2.5 2 0 0 2 2 2 0 SlyX Sec34 PF04136.15 gi|347522605|ref|YP_004780175.1| - 0.68 9.8 5.1 5.3 6.9 0.6 2.1 2 0 0 2 2 2 0 Sec34-like family CorA PF01544.18 gi|347522605|ref|YP_004780175.1| - 0.81 9.0 7.0 1.1 8.6 7.0 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2203 PF09969.9 gi|347522605|ref|YP_004780175.1| - 0.95 10.2 10.6 47 4.7 10.6 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) ABC1 PF03109.16 gi|347522605|ref|YP_004780175.1| - 1.1 9.5 4.1 1.3 9.2 0.2 2.0 1 1 1 2 2 2 0 ABC1 family Seryl_tRNA_N PF02403.22 gi|347522605|ref|YP_004780175.1| - 1.6 9.0 12.7 4.8 7.5 12.7 1.7 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain PV-1 PF06637.11 gi|347522605|ref|YP_004780175.1| - 1.6 7.5 13.7 1.9 7.2 13.7 1.0 1 0 0 1 1 1 0 PV-1 protein (PLVAP) FUSC PF04632.12 gi|347522605|ref|YP_004780175.1| - 1.7 7.1 3.0 2.3 6.7 3.0 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF773 PF05600.12 gi|347522605|ref|YP_004780175.1| - 1.7 7.3 11.7 2.2 6.9 2.4 2.0 2 0 0 2 2 2 0 CDK5 regulatory subunit-associated protein 3 Cluap1 PF10234.9 gi|347522605|ref|YP_004780175.1| - 1.8 7.9 12.9 0.37 10.2 3.2 2.0 2 0 0 2 2 2 0 Clusterin-associated protein-1 NYD-SP28_assoc PF14775.6 gi|347522605|ref|YP_004780175.1| - 1.8 8.7 13.3 0.3 11.2 6.2 2.3 2 0 0 2 2 2 0 Sperm tail C-terminal domain PP2C_C PF07830.13 gi|347522605|ref|YP_004780175.1| - 1.9 9.0 11.0 6.6 7.3 4.1 2.5 1 1 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Snapin_Pallidin PF14712.6 gi|347522605|ref|YP_004780175.1| - 2 8.9 13.9 0.23 11.9 2.2 2.4 2 1 0 2 2 2 0 Snapin/Pallidin HlyD_2 PF12700.7 gi|347522605|ref|YP_004780175.1| - 2.2 6.9 9.1 0.34 9.6 2.1 1.9 1 1 0 1 1 1 0 HlyD family secretion protein DNA_primase_lrg PF04104.14 gi|347522605|ref|YP_004780175.1| - 2.6 7.4 9.2 1.2 8.4 1.7 2.0 1 1 1 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit LMBR1 PF04791.16 gi|347522605|ref|YP_004780175.1| - 2.8 6.7 9.5 1 8.2 1.4 2.0 1 1 1 2 2 2 0 LMBR1-like membrane protein MCU PF04678.13 gi|347522605|ref|YP_004780175.1| - 2.9 8.0 5.2 4 7.5 5.2 1.3 1 0 0 1 1 1 0 Mitochondrial calcium uniporter YabA PF06156.13 gi|347522605|ref|YP_004780175.1| - 3 8.5 13.3 2.5 8.8 3.4 2.1 1 1 0 2 2 2 0 Initiation control protein YabA DUF919 PF06034.11 gi|347522605|ref|YP_004780175.1| - 4.1 7.3 14.6 1.2 9.1 1.3 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) JMY PF15871.5 gi|347522605|ref|YP_004780175.1| - 4.9 6.4 13.5 9.4 5.4 13.4 1.4 1 1 0 1 1 1 0 Junction-mediating and -regulatory protein APG6_N PF17675.1 gi|347522605|ref|YP_004780175.1| - 5.2 7.6 22.9 13 6.3 8.6 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF1664 PF07889.12 gi|347522605|ref|YP_004780175.1| - 6.6 6.8 7.5 2.4 8.2 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) COG2 PF06148.11 gi|347522605|ref|YP_004780175.1| - 6.8 6.8 12.4 11 6.1 4.2 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HXXSHH PF07586.11 gi|347522605|ref|YP_004780175.1| - 7.9 6.0 7.2 1.4 8.4 3.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1552) Atg14 PF10186.9 gi|347522605|ref|YP_004780175.1| - 9.8 5.1 11.5 17 4.3 11.5 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CYTH PF01928.21 gi|347522606|ref|YP_004780176.1| - 6.8e-33 114.1 1.3 7.8e-33 113.9 1.3 1.0 1 0 0 1 1 1 1 CYTH domain Na_H_Exchanger PF00999.21 gi|347522607|ref|YP_004780177.1| - 1.5e-30 106.3 32.7 2.2e-30 105.7 32.7 1.2 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|347522607|ref|YP_004780177.1| - 4.5e-09 36.6 2.6 0.0011 19.4 0.5 2.5 2 0 0 2 2 2 2 CBS domain DUF2283 PF10049.9 gi|347522607|ref|YP_004780177.1| - 0.075 13.3 0.3 1.2 9.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) Acetyltransf_1 PF00583.25 gi|347522608|ref|YP_004780178.1| - 9.8e-11 41.9 0.1 1.4e-10 41.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|347522608|ref|YP_004780178.1| - 8.5e-09 35.3 0.0 1.8e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|347522608|ref|YP_004780178.1| - 1.4e-05 25.4 0.0 2.4e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|347522608|ref|YP_004780178.1| - 0.0005 20.0 0.0 0.00074 19.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|347522608|ref|YP_004780178.1| - 0.0006 20.5 0.0 0.001 19.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|347522608|ref|YP_004780178.1| - 0.0026 17.4 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF1152 PF06626.12 gi|347522610|ref|YP_004780180.1| - 7.8e-100 333.9 1.2 9e-100 333.7 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) vATP-synt_E PF01991.18 gi|347522612|ref|YP_004780182.1| - 1.5e-16 60.4 9.9 2.1e-16 60.0 9.9 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit MbeB_N PF04837.12 gi|347522612|ref|YP_004780182.1| - 0.017 15.4 5.7 1.4 9.2 0.5 3.5 3 1 1 4 4 4 0 MbeB-like, N-term conserved region Cache_3-Cache_2 PF17201.4 gi|347522612|ref|YP_004780182.1| - 0.025 13.9 0.3 0.031 13.6 0.3 1.2 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain DUF445 PF04286.12 gi|347522612|ref|YP_004780182.1| - 0.098 12.4 4.0 0.16 11.8 4.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) AAA_13 PF13166.6 gi|347522612|ref|YP_004780182.1| - 0.16 10.6 5.2 0.21 10.2 5.2 1.0 1 0 0 1 1 1 0 AAA domain YpjP PF14005.6 gi|347522612|ref|YP_004780182.1| - 0.18 11.8 1.9 17 5.5 0.0 2.8 1 1 1 2 2 2 0 YpjP-like protein PdaC PF13739.6 gi|347522612|ref|YP_004780182.1| - 0.4 11.7 2.5 40 5.3 2.1 2.5 1 1 1 2 2 2 0 Deacetylase PdaC YtxH PF12732.7 gi|347522612|ref|YP_004780182.1| - 0.46 11.0 11.3 2.3 8.8 8.4 2.6 2 1 0 2 2 2 0 YtxH-like protein Hydantoinase_B PF02538.14 gi|347522612|ref|YP_004780182.1| - 0.85 7.9 2.4 1.4 7.3 1.6 1.5 1 1 1 2 2 2 0 Hydantoinase B/oxoprolinase FdhE PF04216.12 gi|347522612|ref|YP_004780182.1| - 1.9 8.3 6.2 8 6.3 5.6 2.0 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation ComFB PF10719.9 gi|347522612|ref|YP_004780182.1| - 9.4 6.4 8.7 28 4.9 0.4 3.5 2 1 2 4 4 4 0 Late competence development protein ComFB ATP-synt_F PF01990.17 gi|347522613|ref|YP_004780183.1| - 4.7e-16 58.9 0.2 5.5e-16 58.7 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit LUD_dom PF02589.15 gi|347522613|ref|YP_004780183.1| - 0.0049 16.6 0.0 0.0055 16.4 0.0 1.1 1 0 0 1 1 1 1 LUD domain MAAL_C PF07476.11 gi|347522613|ref|YP_004780183.1| - 0.035 13.3 0.1 0.085 12.0 0.1 1.6 1 1 1 2 2 2 0 Methylaspartate ammonia-lyase C-terminus Acetyltransf_18 PF18014.1 gi|347522613|ref|YP_004780183.1| - 0.038 13.8 0.0 0.048 13.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain V_ATPase_I PF01496.19 gi|347522614|ref|YP_004780184.1| - 4.3e-31 107.7 3.2 2.4e-17 62.2 0.0 2.8 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family Laminin_I PF06008.14 gi|347522614|ref|YP_004780184.1| - 0.021 14.5 1.2 0.24 11.1 0.2 2.1 2 0 0 2 2 2 0 Laminin Domain I Apolipoprotein PF01442.18 gi|347522614|ref|YP_004780184.1| - 3.9 7.3 7.1 1.1e+02 2.6 7.3 2.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain CRR7 PF12095.8 gi|347522614|ref|YP_004780184.1| - 4.5 7.8 4.6 29 5.2 0.4 2.9 2 1 1 3 3 3 0 Protein CHLORORESPIRATORY REDUCTION 7 Aconitase PF00330.20 gi|347522615|ref|YP_004780185.1| - 5.2e-100 335.6 3.6 9.5e-98 328.2 3.6 2.5 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|347522615|ref|YP_004780185.1| - 2.4e-06 26.5 0.0 4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PGM_PMM_I PF02878.16 gi|347522615|ref|YP_004780185.1| - 0.16 11.7 0.5 12 5.6 0.1 2.6 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CdvA PF18822.1 gi|347522616|ref|YP_004780186.1| - 5.1e-27 94.1 15.4 5.1e-27 94.1 15.4 1.5 2 0 0 2 2 1 1 CdvA-like coiled-coil domain PIN_8 PF18476.1 gi|347522616|ref|YP_004780186.1| - 0.01 15.7 8.3 0.015 15.1 8.3 1.2 1 0 0 1 1 1 0 PIN like domain Herpes_U47 PF05467.11 gi|347522616|ref|YP_004780186.1| - 0.023 12.9 0.0 0.031 12.4 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein U47 Perilipin PF03036.16 gi|347522616|ref|YP_004780186.1| - 0.029 13.4 0.2 0.17 10.9 0.0 1.9 1 1 1 2 2 2 0 Perilipin family Peptidase_C65 PF10275.9 gi|347522616|ref|YP_004780186.1| - 0.038 13.4 3.4 0.58 9.6 0.7 2.1 1 1 1 2 2 2 0 Peptidase C65 Otubain Chalcone_3 PF16036.5 gi|347522616|ref|YP_004780186.1| - 0.044 13.9 2.8 1.1 9.4 1.4 2.1 1 1 1 2 2 2 0 Chalcone isomerase-like MiaE_2 PF13794.6 gi|347522616|ref|YP_004780186.1| - 0.066 12.9 0.2 0.096 12.4 0.2 1.3 1 0 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like HHH_8 PF14716.6 gi|347522616|ref|YP_004780186.1| - 0.079 13.3 0.9 3.1 8.3 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix domain DUF16 PF01519.16 gi|347522616|ref|YP_004780186.1| - 0.51 10.9 6.5 1.6 9.2 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF16 Spc24 PF08286.11 gi|347522616|ref|YP_004780186.1| - 0.63 10.3 7.0 1.5 9.1 0.5 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 LXG PF04740.12 gi|347522616|ref|YP_004780186.1| - 0.69 9.6 5.3 8 6.1 5.3 2.3 1 1 0 1 1 1 0 LXG domain of WXG superfamily DUF1664 PF07889.12 gi|347522616|ref|YP_004780186.1| - 0.77 9.8 3.7 2.8 8.0 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Med9 PF07544.13 gi|347522616|ref|YP_004780186.1| - 0.79 9.9 7.4 1.9 8.6 1.7 2.6 2 2 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 GPHR_N PF12537.8 gi|347522616|ref|YP_004780186.1| - 0.79 9.9 5.5 18 5.5 5.5 2.4 1 1 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF4140 PF13600.6 gi|347522616|ref|YP_004780186.1| - 1 9.9 5.3 0.46 11.0 0.6 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4298 PF14131.6 gi|347522616|ref|YP_004780186.1| - 1.8 8.6 7.3 7.8 6.5 0.3 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4298) CorA PF01544.18 gi|347522616|ref|YP_004780186.1| - 2.3 7.5 7.4 4 6.7 7.4 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein VIT1 PF01988.19 gi|347522616|ref|YP_004780186.1| - 2.8 7.8 4.4 1.1 9.1 1.4 1.7 1 1 1 2 2 2 0 VIT family DUF4763 PF15960.5 gi|347522616|ref|YP_004780186.1| - 2.8 7.2 11.2 1.6 8.0 4.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) PIN_12 PF16289.5 gi|347522616|ref|YP_004780186.1| - 3.2 8.2 10.4 15 6.0 9.9 2.2 1 1 0 1 1 1 0 PIN domain DHHA1 PF02272.19 gi|347522616|ref|YP_004780186.1| - 4.4 7.7 6.0 1.6 9.1 0.4 2.3 1 1 1 2 2 2 0 DHHA1 domain GvpL_GvpF PF06386.11 gi|347522616|ref|YP_004780186.1| - 8.5 6.2 10.9 5.2 6.9 5.5 2.0 1 1 1 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF Fib_alpha PF08702.10 gi|347522616|ref|YP_004780186.1| - 9.2 6.4 7.4 4.6 7.4 3.2 2.1 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family PaREP1 PF05942.11 gi|347522617|ref|YP_004780187.1| - 0.013 15.4 0.9 0.15 12.0 0.2 2.6 2 1 0 2 2 2 0 Archaeal PaREP1/PaREP8 family DUF3482 PF11981.8 gi|347522618|ref|YP_004780188.1| - 0.051 13.0 0.2 0.051 13.0 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3482) PT-VENN PF04829.13 gi|347522618|ref|YP_004780188.1| - 0.13 12.3 9.8 1.7 8.8 0.3 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif MccV PF17508.2 gi|347522618|ref|YP_004780188.1| - 0.38 11.3 3.2 0.25 11.9 0.8 1.8 1 1 1 2 2 2 0 Microcin V bacteriocin bact-PGI_C PF10432.9 gi|347522619|ref|YP_004780189.1| - 1.4e-24 86.9 0.2 2.2e-24 86.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|347522619|ref|YP_004780189.1| - 0.012 15.4 0.0 0.03 14.2 0.0 1.7 1 0 0 1 1 1 0 SIS domain DUF2204 PF09970.9 gi|347522620|ref|YP_004780190.1| - 1.4e-66 223.6 0.7 1.6e-66 223.4 0.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) HIT PF01230.23 gi|347522621|ref|YP_004780191.1| - 2.8e-30 104.9 0.0 3.8e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|347522621|ref|YP_004780191.1| - 2.1e-16 60.4 0.0 2.6e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|347522621|ref|YP_004780191.1| - 0.0025 17.7 0.1 0.004 17.0 0.1 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 CoA_binding_2 PF13380.6 gi|347522621|ref|YP_004780191.1| - 0.0064 17.0 0.1 0.0078 16.7 0.1 1.3 1 0 0 1 1 1 1 CoA binding domain NeuB PF03102.14 gi|347522621|ref|YP_004780191.1| - 0.18 11.2 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 NeuB family adh_short_C2 PF13561.6 gi|347522622|ref|YP_004780192.1| - 3e-52 177.5 0.0 4e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|347522622|ref|YP_004780192.1| - 9.6e-40 136.1 0.0 1.2e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|347522622|ref|YP_004780192.1| - 4.7e-05 23.4 0.0 0.00014 21.8 0.0 1.7 2 0 0 2 2 2 1 KR domain His_Phos_1 PF00300.22 gi|347522624|ref|YP_004780194.1| - 2.4e-13 50.2 0.2 3.9e-13 49.5 0.1 1.4 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) QueC PF06508.13 gi|347522625|ref|YP_004780195.1| - 1.5e-47 161.8 0.0 2e-47 161.4 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|347522625|ref|YP_004780195.1| - 0.0003 20.6 0.1 0.00043 20.0 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|347522625|ref|YP_004780195.1| - 0.00057 19.1 0.0 0.00081 18.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|347522625|ref|YP_004780195.1| - 0.13 11.1 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase Apo-CII PF05355.11 gi|347522626|ref|YP_004780196.1| - 0.15 12.2 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Apolipoprotein C-II HAD PF12710.7 gi|347522627|ref|YP_004780197.1| - 2.6e-14 54.1 0.0 3.2e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|347522627|ref|YP_004780197.1| - 5.5e-12 46.4 0.0 1.3e-10 41.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|347522627|ref|YP_004780197.1| - 3.2e-06 27.1 0.0 9.5e-06 25.5 0.0 1.7 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|347522627|ref|YP_004780197.1| - 0.00027 21.0 0.1 0.015 15.3 0.1 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|347522627|ref|YP_004780197.1| - 0.00063 19.2 0.0 0.0031 16.9 0.0 1.9 1 1 0 1 1 1 1 Putative Phosphatase S6PP PF05116.13 gi|347522627|ref|YP_004780197.1| - 0.14 11.6 0.0 0.28 10.7 0.0 1.4 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase HAD_2 PF13419.6 gi|347522627|ref|YP_004780197.1| - 0.17 12.0 0.0 3 7.9 0.0 2.5 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase AAA_16 PF13191.6 gi|347522628|ref|YP_004780198.1| - 0.0075 16.7 0.4 0.28 11.5 0.1 3.3 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|347522628|ref|YP_004780198.1| - 0.018 15.3 0.0 0.11 12.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|347522628|ref|YP_004780198.1| - 0.16 12.4 0.0 0.39 11.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DNA_pol3_gamma3 PF12169.8 gi|347522629|ref|YP_004780199.1| - 0.043 13.7 0.1 0.076 12.9 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III Pyr_redox_2 PF07992.14 gi|347522631|ref|YP_004780201.1| - 4e-32 111.6 0.0 5.6e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|347522631|ref|YP_004780201.1| - 3.4e-10 40.3 2.4 0.001 19.6 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|347522631|ref|YP_004780201.1| - 2.9e-07 30.0 0.3 0.00016 21.0 0.3 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|347522631|ref|YP_004780201.1| - 3.6e-07 29.7 2.4 0.039 13.2 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|347522631|ref|YP_004780201.1| - 2.6e-05 24.4 0.9 0.00016 21.8 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|347522631|ref|YP_004780201.1| - 0.0001 21.8 2.5 0.00013 21.5 0.2 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|347522631|ref|YP_004780201.1| - 0.00011 21.4 2.8 0.00042 19.5 0.7 2.4 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|347522631|ref|YP_004780201.1| - 0.00015 20.6 1.3 0.00015 20.6 1.3 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|347522631|ref|YP_004780201.1| - 0.00038 19.8 2.3 0.00038 19.8 2.3 1.6 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|347522631|ref|YP_004780201.1| - 0.0018 17.9 8.2 0.12 12.0 0.9 2.9 2 1 0 3 3 3 2 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|347522631|ref|YP_004780201.1| - 0.0035 17.4 0.1 7.4 6.6 0.0 3.0 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|347522631|ref|YP_004780201.1| - 0.0043 17.5 0.4 0.11 12.9 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|347522631|ref|YP_004780201.1| - 0.011 16.0 0.1 0.38 11.0 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain Thi4 PF01946.17 gi|347522631|ref|YP_004780201.1| - 0.036 13.3 0.1 0.059 12.6 0.1 1.3 1 0 0 1 1 1 0 Thi4 family K_oxygenase PF13434.6 gi|347522631|ref|YP_004780201.1| - 0.041 13.0 0.1 0.32 10.1 0.0 2.3 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|347522631|ref|YP_004780201.1| - 0.065 12.3 4.4 0.12 11.4 0.9 2.5 3 0 0 3 3 3 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|347522631|ref|YP_004780201.1| - 0.089 12.4 1.8 0.31 10.6 0.4 2.4 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|347522631|ref|YP_004780201.1| - 0.11 12.4 0.9 0.33 10.8 0.5 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|347522631|ref|YP_004780201.1| - 0.24 10.4 1.4 0.4 9.7 1.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|347522631|ref|YP_004780201.1| - 0.54 10.2 3.8 1.4 8.9 0.7 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding NiFeSe_Hases PF00374.19 gi|347522632|ref|YP_004780202.1| - 1.9e-50 172.3 0.0 4.3e-32 111.7 0.0 3.3 2 2 1 3 3 3 3 Nickel-dependent hydrogenase Fer4_8 PF13183.6 gi|347522633|ref|YP_004780203.1| - 4.4e-10 39.9 1.0 4.4e-10 39.9 1.0 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347522633|ref|YP_004780203.1| - 1.1e-09 38.7 1.5 3e-09 37.3 1.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|347522633|ref|YP_004780203.1| - 3.9e-09 36.6 3.6 0.0032 17.6 0.0 3.9 4 0 0 4 4 4 2 Cysteine-rich domain Fer4_7 PF12838.7 gi|347522633|ref|YP_004780203.1| - 5.8e-09 36.4 3.6 5.8e-09 36.4 3.6 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347522633|ref|YP_004780203.1| - 7.7e-07 29.1 8.6 1.5e-05 25.0 8.4 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347522633|ref|YP_004780203.1| - 2e-05 24.6 9.4 0.00078 19.6 9.6 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347522633|ref|YP_004780203.1| - 5.2e-05 22.9 21.7 0.0035 17.1 4.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347522633|ref|YP_004780203.1| - 7.9e-05 22.7 8.4 0.021 14.9 0.5 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347522633|ref|YP_004780203.1| - 8.9e-05 23.4 9.1 0.00023 22.0 7.0 2.6 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|347522633|ref|YP_004780203.1| - 0.0003 20.7 18.8 0.0039 17.2 1.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347522633|ref|YP_004780203.1| - 0.0004 20.3 20.7 0.0018 18.3 2.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|347522633|ref|YP_004780203.1| - 0.00056 20.1 2.6 0.056 13.6 0.1 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347522633|ref|YP_004780203.1| - 0.0051 17.2 17.0 0.016 15.7 1.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Ribosomal_L37ae PF01780.19 gi|347522633|ref|YP_004780203.1| - 0.056 13.5 0.2 7.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Ribosomal L37ae protein family Fer4_22 PF17179.4 gi|347522633|ref|YP_004780203.1| - 0.24 12.2 8.7 3.3 8.6 0.2 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|347522633|ref|YP_004780203.1| - 0.47 11.0 12.5 1.2 9.7 2.3 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|347522633|ref|YP_004780203.1| - 0.86 10.4 6.9 1.1 10.0 0.4 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|347522633|ref|YP_004780203.1| - 9.9 7.4 26.8 0.8 10.8 4.0 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain NiFe_hyd_SSU_C PF14720.6 gi|347522635|ref|YP_004780205.1| - 3.6e-25 88.1 1.5 6.9e-25 87.2 1.5 1.5 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|347522635|ref|YP_004780205.1| - 2.3e-13 50.1 0.0 5.2e-10 39.3 0.0 3.8 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|347522635|ref|YP_004780205.1| - 0.097 12.6 0.3 0.097 12.6 0.3 3.9 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence CLTH PF10607.9 gi|347522636|ref|YP_004780206.1| - 0.036 13.9 0.1 0.066 13.1 0.1 1.5 1 1 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain HycI PF01750.18 gi|347522637|ref|YP_004780207.1| - 0.053 13.4 0.0 0.18 11.6 0.0 1.9 1 1 1 2 2 2 0 Hydrogenase maturation protease NUDIX PF00293.28 gi|347522640|ref|YP_004780210.1| - 7.9e-20 71.2 0.4 9.7e-20 71.0 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain T2SSE PF00437.20 gi|347522640|ref|YP_004780210.1| - 0.021 13.9 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3218 PF11508.8 gi|347522640|ref|YP_004780210.1| - 0.081 12.4 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3218) V4R PF02830.18 gi|347522641|ref|YP_004780211.1| - 1.1e-09 38.1 0.0 2.3e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 V4R domain Hydantoinase_A PF01968.18 gi|347522641|ref|YP_004780211.1| - 0.058 12.6 0.0 0.083 12.1 0.0 1.1 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase dsDNA_bind PF01984.20 gi|347522642|ref|YP_004780212.1| - 3.9e-23 81.8 12.2 4.5e-23 81.7 12.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|347522642|ref|YP_004780212.1| - 0.0072 15.6 9.1 0.0088 15.3 9.1 1.1 1 0 0 1 1 1 1 Radial spoke protein 3 DUF4404 PF14357.6 gi|347522642|ref|YP_004780212.1| - 0.1 13.2 4.9 0.14 12.8 3.9 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) YqzH PF14164.6 gi|347522642|ref|YP_004780212.1| - 0.64 10.1 2.1 1.8 8.7 0.6 2.3 2 1 1 3 3 3 0 YqzH-like protein Ribosomal_S19e PF01090.19 gi|347522643|ref|YP_004780213.1| - 2.9e-56 189.0 0.0 3.4e-56 188.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|347522643|ref|YP_004780213.1| - 0.0016 18.4 0.8 0.035 14.0 0.1 2.8 3 1 0 3 3 3 1 Ribonuclease R winged-helix domain DUF4788 PF16032.5 gi|347522643|ref|YP_004780213.1| - 0.21 10.5 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4788) CRS1_YhbY PF01985.21 gi|347522644|ref|YP_004780214.1| - 1.5e-12 47.5 0.6 1.9e-12 47.2 0.6 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain HTH_24 PF13412.6 gi|347522644|ref|YP_004780214.1| - 0.045 13.3 1.4 6 6.5 0.2 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Methyltransf_8 PF05148.15 gi|347522644|ref|YP_004780214.1| - 0.16 11.8 0.0 0.19 11.5 0.0 1.1 1 0 0 1 1 1 0 Hypothetical methyltransferase Rpr2 PF04032.16 gi|347522645|ref|YP_004780215.1| - 2.6e-11 43.6 0.0 3.4e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF4190 PF13828.6 gi|347522645|ref|YP_004780215.1| - 0.0085 15.8 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4190) Phage_holin_2_4 PF16082.5 gi|347522645|ref|YP_004780215.1| - 0.074 12.8 1.1 0.14 11.9 1.1 1.4 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like EMG1 PF03587.14 gi|347522646|ref|YP_004780216.1| - 1.1e-37 129.6 0.0 1.2e-37 129.5 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase TssN PF17555.2 gi|347522647|ref|YP_004780217.1| - 0.12 11.7 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssN CDC48_N PF02359.18 gi|347522648|ref|YP_004780218.1| - 3e-23 81.8 1.4 1.3e-22 79.7 0.5 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|347522648|ref|YP_004780218.1| - 1e-14 54.0 2.2 8.9e-08 31.8 0.4 3.2 3 0 0 3 3 3 2 Cell division protein 48 (CDC48), domain 2 MazE_antitoxin PF04014.18 gi|347522648|ref|YP_004780218.1| - 0.0015 18.4 5.3 0.096 12.6 0.4 3.3 3 0 0 3 3 3 2 Antidote-toxin recognition MazE, bacterial antitoxin DUF2267 PF10025.9 gi|347522648|ref|YP_004780218.1| - 0.0018 18.6 0.1 0.0045 17.3 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) UFD1 PF03152.14 gi|347522648|ref|YP_004780218.1| - 0.031 13.8 0.0 7.4 6.0 0.0 2.9 3 1 0 3 3 3 0 Ubiquitin fusion degradation protein UFD1 DUF1905 PF08922.11 gi|347522648|ref|YP_004780218.1| - 0.039 14.0 0.2 11 6.2 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) Lactamase_B_2 PF12706.7 gi|347522649|ref|YP_004780219.1| - 1.9e-09 37.4 0.0 2.6e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347522649|ref|YP_004780219.1| - 2.1e-07 31.1 0.2 1.9e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|347522649|ref|YP_004780219.1| - 0.00013 21.9 0.0 0.00037 20.4 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TGT_C2 PF14810.6 gi|347522650|ref|YP_004780220.1| - 5.9e-25 87.2 0.0 8.8e-25 86.6 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|347522650|ref|YP_004780220.1| - 2.6e-09 36.9 0.2 4.4e-09 36.2 0.2 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|347522650|ref|YP_004780220.1| - 0.016 15.4 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain PAC2 PF09754.9 gi|347522651|ref|YP_004780221.1| - 1.5e-36 126.4 0.0 1.7e-36 126.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Vac_Fusion PF02346.16 gi|347522651|ref|YP_004780221.1| - 0.045 13.4 2.5 0.057 13.1 0.9 1.9 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 TGT PF01702.18 gi|347522652|ref|YP_004780222.1| - 7.8e-75 252.2 0.0 1.2e-74 251.5 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|347522652|ref|YP_004780222.1| - 1.7e-16 60.5 1.1 3.5e-16 59.4 1.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C1 PF14809.6 gi|347522652|ref|YP_004780222.1| - 0.086 13.2 0.4 0.29 11.5 0.2 2.1 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation RNA_pol_RpbG PF16992.5 gi|347522653|ref|YP_004780223.1| - 1.1e-18 67.4 0.0 1.2e-18 67.2 0.0 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|347522653|ref|YP_004780223.1| - 0.011 15.9 0.0 1.5 9.0 0.0 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb8 DUF87 PF01935.17 gi|347522654|ref|YP_004780224.1| - 9.7e-20 71.6 0.0 1.8e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|347522654|ref|YP_004780224.1| - 4e-05 22.7 0.0 0.0001 21.3 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|347522654|ref|YP_004780224.1| - 0.00014 20.7 0.0 0.012 14.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|347522654|ref|YP_004780224.1| - 0.00078 18.9 0.0 0.0018 17.7 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family CbiA PF01656.23 gi|347522654|ref|YP_004780224.1| - 0.014 15.5 0.0 0.046 13.8 0.1 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|347522654|ref|YP_004780224.1| - 0.02 15.1 0.1 1 9.6 0.0 2.8 1 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|347522654|ref|YP_004780224.1| - 0.064 12.7 0.1 14 5.1 0.0 2.7 3 0 0 3 3 3 0 PhoH-like protein T4SS-DNA_transf PF02534.14 gi|347522654|ref|YP_004780224.1| - 0.067 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_6 PF12774.7 gi|347522654|ref|YP_004780224.1| - 0.14 11.1 0.1 0.47 9.4 0.0 1.8 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region DotD PF16816.5 gi|347522654|ref|YP_004780224.1| - 0.14 12.1 0.0 5.3 7.0 0.0 3.1 4 0 0 4 4 4 0 DotD protein AAA_18 PF13238.6 gi|347522655|ref|YP_004780225.1| - 4.3e-17 62.9 0.0 7e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|347522655|ref|YP_004780225.1| - 7.3e-05 23.2 0.0 0.00038 20.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347522655|ref|YP_004780225.1| - 9.1e-05 22.9 0.0 0.00019 21.8 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|347522655|ref|YP_004780225.1| - 0.00022 21.5 0.1 0.0005 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|347522655|ref|YP_004780225.1| - 0.00059 20.2 0.0 0.0041 17.4 0.0 2.0 2 0 0 2 2 2 1 Hydin Adenylate kinase-like domain CPT PF07931.12 gi|347522655|ref|YP_004780225.1| - 0.00091 19.1 0.0 0.021 14.6 0.0 2.2 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_22 PF13401.6 gi|347522655|ref|YP_004780225.1| - 0.002 18.4 0.0 0.0029 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|347522655|ref|YP_004780225.1| - 0.0031 17.5 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|347522655|ref|YP_004780225.1| - 0.0052 17.2 0.0 0.0083 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|347522655|ref|YP_004780225.1| - 0.0059 15.9 0.1 0.02 14.2 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin dNK PF01712.19 gi|347522655|ref|YP_004780225.1| - 0.012 15.5 0.0 0.24 11.2 0.0 2.2 2 0 0 2 2 2 0 Deoxynucleoside kinase Cytidylate_kin PF02224.18 gi|347522655|ref|YP_004780225.1| - 0.017 14.8 0.0 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 Cytidylate kinase AAA_24 PF13479.6 gi|347522655|ref|YP_004780225.1| - 0.027 14.2 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ADK PF00406.22 gi|347522655|ref|YP_004780225.1| - 0.044 13.9 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase DUF815 PF05673.13 gi|347522655|ref|YP_004780225.1| - 0.048 12.8 0.0 0.096 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|347522655|ref|YP_004780225.1| - 0.055 13.2 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ABC_tran PF00005.27 gi|347522655|ref|YP_004780225.1| - 0.066 13.7 0.0 0.17 12.4 0.0 1.7 2 0 0 2 2 2 0 ABC transporter SKI PF01202.22 gi|347522655|ref|YP_004780225.1| - 0.084 13.0 0.0 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 Shikimate kinase AAA_33 PF13671.6 gi|347522655|ref|YP_004780225.1| - 0.085 13.0 0.2 0.11 12.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|347522655|ref|YP_004780225.1| - 0.13 12.0 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.6 gi|347522655|ref|YP_004780225.1| - 0.16 11.5 0.4 0.31 10.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|347522655|ref|YP_004780225.1| - 0.18 12.2 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Cpn60_TCP1 PF00118.24 gi|347522656|ref|YP_004780226.1| - 2.6e-183 610.1 10.5 3e-183 609.9 10.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|347522656|ref|YP_004780226.1| - 0.0065 16.4 2.5 0.075 12.9 0.1 2.6 2 0 0 2 2 2 1 DAK2 domain M20_dimer PF07687.14 gi|347522656|ref|YP_004780226.1| - 0.01 15.8 0.1 13 5.8 0.1 3.5 3 0 0 3 3 3 2 Peptidase dimerisation domain Rad10 PF03834.14 gi|347522657|ref|YP_004780227.1| - 0.11 12.5 0.1 0.15 12.1 0.1 1.2 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) S4 PF01479.25 gi|347522658|ref|YP_004780228.1| - 0.01 15.6 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 1 S4 domain YhfH PF14149.6 gi|347522658|ref|YP_004780228.1| - 0.025 14.6 0.5 0.072 13.1 0.1 2.0 1 1 0 1 1 1 0 YhfH-like protein NAD_kinase PF01513.21 gi|347522659|ref|YP_004780229.1| - 1e-34 120.1 0.0 1.5e-34 119.5 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|347522659|ref|YP_004780229.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Met_10 PF02475.16 gi|347522660|ref|YP_004780230.1| - 4.3e-30 104.9 0.2 5.9e-30 104.5 0.2 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 gi|347522660|ref|YP_004780230.1| - 0.00012 21.8 0.3 0.0003 20.5 0.0 1.8 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F TRM PF02005.16 gi|347522660|ref|YP_004780230.1| - 0.0023 17.1 0.0 0.0032 16.7 0.0 1.4 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_11 PF08241.12 gi|347522660|ref|YP_004780230.1| - 0.006 17.2 0.4 0.044 14.4 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|347522660|ref|YP_004780230.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|347522660|ref|YP_004780230.1| - 0.015 16.0 0.1 0.082 13.6 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|347522660|ref|YP_004780230.1| - 0.15 11.6 0.1 1.4 8.4 0.0 2.3 2 1 0 2 2 2 0 RNA cap guanine-N2 methyltransferase DUF371 PF04027.13 gi|347522661|ref|YP_004780231.1| - 4.5e-17 62.3 1.0 5.7e-16 58.7 1.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF371) PCMT PF01135.19 gi|347522662|ref|YP_004780232.1| - 2e-76 256.4 0.0 2.4e-76 256.2 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|347522662|ref|YP_004780232.1| - 5.7e-10 39.2 0.0 8e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|347522662|ref|YP_004780232.1| - 9.4e-07 28.7 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|347522662|ref|YP_004780232.1| - 1.3e-06 29.4 0.0 2.7e-06 28.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347522662|ref|YP_004780232.1| - 3.3e-06 27.7 0.0 5.1e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347522662|ref|YP_004780232.1| - 0.0002 21.9 0.0 0.00079 20.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|347522662|ref|YP_004780232.1| - 0.0002 20.6 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.6 gi|347522662|ref|YP_004780232.1| - 0.00043 20.1 0.0 0.0011 18.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|347522662|ref|YP_004780232.1| - 0.00086 18.5 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase POTRA PF07244.15 gi|347522662|ref|YP_004780232.1| - 0.0017 18.9 0.0 0.029 15.0 0.0 2.3 2 0 0 2 2 2 1 Surface antigen variable number repeat Fibrillarin PF01269.17 gi|347522662|ref|YP_004780232.1| - 0.0037 16.4 0.0 0.0055 15.8 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.20 gi|347522662|ref|YP_004780232.1| - 0.011 15.1 0.0 0.03 13.6 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|347522662|ref|YP_004780232.1| - 0.017 15.0 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain ACP_syn_III_C PF08541.10 gi|347522662|ref|YP_004780232.1| - 0.059 13.5 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GPP34 PF05719.11 gi|347522662|ref|YP_004780232.1| - 0.2 11.6 1.5 0.35 10.9 0.5 1.8 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) XPG_I PF00867.18 gi|347522663|ref|YP_004780233.1| - 4.6e-28 97.4 0.0 8.7e-28 96.5 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|347522663|ref|YP_004780233.1| - 7.7e-21 74.5 0.0 1.5e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|347522663|ref|YP_004780233.1| - 0.0022 18.5 0.2 0.0087 16.6 0.0 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|347522663|ref|YP_004780233.1| - 0.028 15.0 0.0 0.18 12.5 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF4878 PF12870.7 gi|347522663|ref|YP_004780233.1| - 0.033 14.5 0.3 0.065 13.6 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4878) DUF1771 PF08590.10 gi|347522663|ref|YP_004780233.1| - 6.1 7.3 11.3 0.31 11.5 4.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Cdc6_C PF09079.11 gi|347522664|ref|YP_004780234.1| - 0.001 19.0 0.3 0.0012 18.8 0.3 1.1 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|347522665|ref|YP_004780235.1| - 8.3e-98 323.9 0.0 1.7e-49 167.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|347522665|ref|YP_004780235.1| - 9.4e-38 127.8 4.3 3.4e-18 65.2 0.7 2.9 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|347522665|ref|YP_004780235.1| - 2.1e-35 120.8 1.3 1.3e-34 118.2 1.2 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|347522665|ref|YP_004780235.1| - 2.6e-16 59.8 0.0 5e-08 32.9 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|347522665|ref|YP_004780235.1| - 5.4e-15 54.9 7.0 5.6e-15 54.9 2.1 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|347522665|ref|YP_004780235.1| - 5.9e-15 55.8 0.0 4.6e-07 30.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|347522665|ref|YP_004780235.1| - 1.7e-13 51.3 1.7 5e-06 27.0 0.0 4.3 2 2 1 4 4 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|347522665|ref|YP_004780235.1| - 6.2e-11 42.7 0.6 0.0016 18.7 0.0 4.5 3 2 1 4 4 3 2 AAA domain AAA_5 PF07728.14 gi|347522665|ref|YP_004780235.1| - 7.5e-11 42.2 0.8 0.0005 20.1 0.1 4.3 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|347522665|ref|YP_004780235.1| - 1.7e-10 41.1 0.0 0.00014 21.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|347522665|ref|YP_004780235.1| - 1.7e-09 38.0 0.0 0.00067 19.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|347522665|ref|YP_004780235.1| - 4.2e-09 36.1 0.0 0.0024 17.1 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain Vps4_C PF09336.10 gi|347522665|ref|YP_004780235.1| - 2.4e-08 33.9 0.4 0.00032 20.6 0.0 3.3 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|347522665|ref|YP_004780235.1| - 5.3e-08 33.5 0.0 0.0068 17.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|347522665|ref|YP_004780235.1| - 8.8e-08 32.1 0.0 0.013 15.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|347522665|ref|YP_004780235.1| - 3.5e-07 30.1 0.0 0.0074 16.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|347522665|ref|YP_004780235.1| - 3.1e-06 27.5 0.0 0.033 14.6 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ATPase_2 PF01637.18 gi|347522665|ref|YP_004780235.1| - 4.7e-06 26.7 0.5 0.0047 16.9 0.0 3.4 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|347522665|ref|YP_004780235.1| - 5.6e-06 25.9 0.8 0.072 12.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|347522665|ref|YP_004780235.1| - 7.5e-06 25.7 0.0 0.062 13.0 0.0 3.5 2 1 0 2 2 2 1 Sigma-54 interaction domain TsaE PF02367.17 gi|347522665|ref|YP_004780235.1| - 2.1e-05 24.5 0.0 0.16 12.0 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|347522665|ref|YP_004780235.1| - 5.8e-05 23.6 0.0 0.11 13.0 0.0 2.5 2 0 0 2 2 2 1 ABC transporter AAA_28 PF13521.6 gi|347522665|ref|YP_004780235.1| - 6.5e-05 23.2 0.0 0.11 12.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|347522665|ref|YP_004780235.1| - 0.00018 21.4 0.0 0.22 11.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|347522665|ref|YP_004780235.1| - 0.00022 20.5 0.0 0.19 10.8 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain Zeta_toxin PF06414.12 gi|347522665|ref|YP_004780235.1| - 0.00028 20.2 0.7 0.65 9.2 0.0 2.8 3 0 0 3 3 3 2 Zeta toxin AAA_7 PF12775.7 gi|347522665|ref|YP_004780235.1| - 0.00039 20.0 0.0 0.42 10.1 0.0 2.6 2 1 0 2 2 2 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|347522665|ref|YP_004780235.1| - 0.0004 20.0 4.8 2 7.9 0.0 4.3 3 1 0 4 4 4 2 AAA domain Bac_DnaA PF00308.18 gi|347522665|ref|YP_004780235.1| - 0.00053 19.9 0.0 0.24 11.2 0.0 3.5 2 2 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.13 gi|347522665|ref|YP_004780235.1| - 0.00054 19.2 0.0 1.1 8.4 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) UFD1 PF03152.14 gi|347522665|ref|YP_004780235.1| - 0.00062 19.3 0.0 0.023 14.2 0.0 2.4 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 NACHT PF05729.12 gi|347522665|ref|YP_004780235.1| - 0.00094 19.1 0.7 0.5 10.3 0.0 3.2 3 0 0 3 3 3 1 NACHT domain ATPase PF06745.13 gi|347522665|ref|YP_004780235.1| - 0.0013 18.1 0.5 5 6.4 0.0 3.4 2 1 0 3 3 3 0 KaiC AAA_17 PF13207.6 gi|347522665|ref|YP_004780235.1| - 0.0019 18.6 0.0 1.8 9.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.17 gi|347522665|ref|YP_004780235.1| - 0.0032 16.6 0.1 0.12 11.5 0.0 2.4 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 AFG1_ATPase PF03969.16 gi|347522665|ref|YP_004780235.1| - 0.0069 15.3 0.0 1.6 7.6 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase NTPase_1 PF03266.15 gi|347522665|ref|YP_004780235.1| - 0.0094 15.9 5.3 5.4 6.9 0.0 4.8 4 2 1 5 5 4 0 NTPase PhoH PF02562.16 gi|347522665|ref|YP_004780235.1| - 0.016 14.7 0.4 3.4 7.1 0.1 2.5 2 0 0 2 2 2 0 PhoH-like protein Viral_helicase1 PF01443.18 gi|347522665|ref|YP_004780235.1| - 0.024 14.4 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Guanylate_kin PF00625.21 gi|347522665|ref|YP_004780235.1| - 0.05 13.3 0.4 35 4.0 0.0 3.7 2 2 2 4 4 4 0 Guanylate kinase MMR_HSR1 PF01926.23 gi|347522665|ref|YP_004780235.1| - 0.05 13.7 0.0 7.9 6.6 0.0 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|347522665|ref|YP_004780235.1| - 0.091 13.1 2.4 18 5.7 0.1 3.2 2 1 1 3 3 3 0 AAA domain DNA_ligase_OB PF03120.16 gi|347522665|ref|YP_004780235.1| - 0.11 12.4 1.3 3.3 7.7 0.1 2.9 2 1 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain Roc PF08477.13 gi|347522665|ref|YP_004780235.1| - 0.11 12.7 0.0 15 5.8 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ADSL_C PF10397.9 gi|347522665|ref|YP_004780235.1| - 0.12 13.0 1.8 7.8 7.1 0.1 3.0 3 0 0 3 3 2 0 Adenylosuccinate lyase C-terminus DNA_ligase_A_C PF04679.15 gi|347522665|ref|YP_004780235.1| - 0.13 12.9 0.0 25 5.5 0.0 3.4 3 0 0 3 3 3 0 ATP dependent DNA ligase C terminal region AAA_29 PF13555.6 gi|347522665|ref|YP_004780235.1| - 0.15 11.8 0.0 24 4.8 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.6 gi|347522665|ref|YP_004780235.1| - 0.16 12.1 0.0 9.9 6.3 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain PduV-EutP PF10662.9 gi|347522665|ref|YP_004780235.1| - 0.16 11.7 0.0 8.5 6.1 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF2075 PF09848.9 gi|347522665|ref|YP_004780235.1| - 0.25 10.5 0.0 4.6 6.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) EF1_GNE PF00736.19 gi|347522666|ref|YP_004780236.1| - 1.1e-17 63.9 0.0 1.3e-17 63.8 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HHH PF00633.23 gi|347522666|ref|YP_004780236.1| - 0.078 12.9 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1610 PF07754.11 gi|347522667|ref|YP_004780237.1| - 2.6e-13 49.7 8.5 1.5e-11 44.0 3.4 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.12 gi|347522667|ref|YP_004780237.1| - 0.0048 16.8 4.1 0.0079 16.2 4.1 1.4 1 0 0 1 1 1 1 zinc-ribbons zf-C2HC5 PF06221.13 gi|347522667|ref|YP_004780237.1| - 0.0064 16.5 7.8 0.039 13.9 2.6 2.1 1 1 1 2 2 2 1 Putative zinc finger motif, C2HC5-type zf-CHY PF05495.12 gi|347522667|ref|YP_004780237.1| - 0.017 15.6 5.9 0.026 15.0 5.9 1.4 1 1 0 1 1 1 0 CHY zinc finger Rhodanese_C PF12368.8 gi|347522667|ref|YP_004780237.1| - 0.022 15.1 4.0 0.028 14.8 4.0 1.2 1 0 0 1 1 1 0 Rhodanase C-terminal DZR PF12773.7 gi|347522667|ref|YP_004780237.1| - 0.024 14.7 10.3 0.33 11.0 1.1 2.2 1 1 1 2 2 2 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|347522667|ref|YP_004780237.1| - 0.03 14.4 9.4 0.54 10.4 2.7 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RING_7 PF02591.15 gi|347522667|ref|YP_004780237.1| - 0.064 13.5 8.6 4.2 7.6 0.1 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347522667|ref|YP_004780237.1| - 0.1 12.4 17.2 0.63 9.8 3.8 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|347522667|ref|YP_004780237.1| - 0.16 11.6 13.0 3.1 7.5 0.2 4.0 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|347522667|ref|YP_004780237.1| - 0.17 11.9 7.6 1.4 9.0 0.1 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_9 PF13901.6 gi|347522667|ref|YP_004780237.1| - 0.51 10.3 5.2 0.65 9.9 5.2 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon PknG_rubred PF16919.5 gi|347522667|ref|YP_004780237.1| - 0.85 9.8 3.9 1.4 9.1 3.9 1.3 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain zf-RING_5 PF14634.6 gi|347522667|ref|YP_004780237.1| - 1.2 9.1 9.0 12 6.0 9.0 2.2 1 1 0 1 1 1 0 zinc-RING finger domain zf-MYND PF01753.18 gi|347522667|ref|YP_004780237.1| - 1.7 8.8 9.2 8.6 6.5 0.2 2.2 2 0 0 2 2 2 0 MYND finger zinc_ribbon_10 PF10058.9 gi|347522667|ref|YP_004780237.1| - 2.1 8.2 16.8 1.7 8.4 0.4 3.8 1 1 2 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Mu-like_Com PF10122.9 gi|347522667|ref|YP_004780237.1| - 2.9 7.4 11.0 1.3 8.5 0.5 2.7 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-LITAF-like PF10601.9 gi|347522667|ref|YP_004780237.1| - 8.4 6.7 12.3 2.1 8.7 2.0 3.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Nop10p PF04135.12 gi|347522667|ref|YP_004780237.1| - 8.8 6.5 6.5 6.8 6.8 1.5 2.3 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-HIT PF04438.16 gi|347522667|ref|YP_004780237.1| - 9 6.3 14.7 12 5.8 5.7 3.1 3 1 0 3 3 3 0 HIT zinc finger zinc_ribbon_9 PF14369.6 gi|347522667|ref|YP_004780237.1| - 9.8 6.5 11.7 2.8 8.3 1.4 2.6 2 2 0 2 2 2 0 zinc-ribbon PTH2 PF01981.16 gi|347522668|ref|YP_004780238.1| - 1.2e-42 144.9 0.1 1.3e-42 144.8 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TruD PF01142.18 gi|347522669|ref|YP_004780239.1| - 6.4e-40 137.2 0.7 5.2e-23 81.5 0.0 3.0 1 1 2 3 3 3 3 tRNA pseudouridine synthase D (TruD) KH_5 PF13184.6 gi|347522670|ref|YP_004780240.1| - 1.3e-06 28.4 0.1 4.4e-06 26.7 0.0 2.0 2 0 0 2 2 2 1 NusA-like KH domain Ribosomal_S7e PF01251.18 gi|347522670|ref|YP_004780240.1| - 0.00058 19.7 0.1 0.017 14.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein S7e Peptidase_M54 PF07998.11 gi|347522671|ref|YP_004780241.1| - 1.2e-37 129.8 0.0 1.5e-37 129.5 0.0 1.0 1 0 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.8 gi|347522671|ref|YP_004780241.1| - 0.00086 18.0 0.0 0.0011 17.6 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M66 PF10462.9 gi|347522671|ref|YP_004780241.1| - 0.0047 15.9 0.0 0.007 15.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.6 gi|347522671|ref|YP_004780241.1| - 0.0047 17.4 0.1 0.0076 16.8 0.0 1.5 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|347522671|ref|YP_004780241.1| - 0.0072 16.2 0.0 0.01 15.7 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|347522671|ref|YP_004780241.1| - 0.011 15.9 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.6 gi|347522671|ref|YP_004780241.1| - 0.092 12.4 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|347522671|ref|YP_004780241.1| - 0.2 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Archease PF01951.16 gi|347522672|ref|YP_004780242.1| - 4.8e-42 143.5 0.1 5.4e-42 143.3 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) SPOUT_MTase_2 PF14419.6 gi|347522672|ref|YP_004780242.1| - 0.056 12.8 0.1 0.083 12.3 0.1 1.3 1 1 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP EPSP_synthase PF00275.20 gi|347522673|ref|YP_004780243.1| - 5.8e-22 78.0 0.0 2e-21 76.2 0.0 1.8 1 1 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DUF3945 PF13101.6 gi|347522673|ref|YP_004780243.1| - 0.071 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) Muraidase PF11860.8 gi|347522674|ref|YP_004780244.1| - 0.2 11.9 0.0 0.21 11.8 0.0 1.0 1 0 0 1 1 1 0 N-acetylmuramidase MTHFR PF02219.17 gi|347522675|ref|YP_004780245.1| - 3.3e-05 23.4 0.0 5.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase HEM4 PF02602.15 gi|347522675|ref|YP_004780245.1| - 0.022 14.1 0.0 0.093 12.1 0.0 2.2 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD zf-C2HC5 PF06221.13 gi|347522676|ref|YP_004780246.1| - 0.00025 21.0 1.3 0.12 12.4 0.1 2.2 2 0 0 2 2 2 2 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.12 gi|347522676|ref|YP_004780246.1| - 0.0006 19.8 4.1 0.0044 17.0 4.1 1.9 1 1 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|347522676|ref|YP_004780246.1| - 0.00093 19.2 4.7 0.014 15.4 3.5 2.1 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_10 PF10058.9 gi|347522676|ref|YP_004780246.1| - 0.0045 16.7 4.4 0.0045 16.7 4.4 1.8 1 1 1 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein DUF1272 PF06906.11 gi|347522676|ref|YP_004780246.1| - 0.0051 16.9 5.5 0.012 15.6 5.5 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) C1_2 PF03107.16 gi|347522676|ref|YP_004780246.1| - 0.0063 16.8 7.5 0.019 15.3 1.5 2.2 1 1 1 2 2 2 1 C1 domain Zn_ribbon_SprT PF17283.2 gi|347522676|ref|YP_004780246.1| - 0.0081 16.1 12.6 0.014 15.3 7.1 2.7 2 1 0 2 2 2 1 SprT-like zinc ribbon domain Prok-RING_4 PF14447.6 gi|347522676|ref|YP_004780246.1| - 0.023 14.6 9.0 4.2 7.3 8.9 2.8 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 Ribosomal_S14 PF00253.21 gi|347522676|ref|YP_004780246.1| - 0.058 13.2 0.4 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S14p/S29e HypA PF01155.19 gi|347522676|ref|YP_004780246.1| - 0.23 11.5 3.9 0.98 9.5 3.9 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|347522676|ref|YP_004780246.1| - 0.38 10.5 0.1 0.38 10.5 0.1 3.2 3 1 0 3 3 3 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|347522676|ref|YP_004780246.1| - 0.42 10.7 4.0 4.6 7.4 0.1 2.3 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-LITAF-like PF10601.9 gi|347522676|ref|YP_004780246.1| - 0.52 10.6 7.5 1.3e+02 2.9 7.5 2.1 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain DUF2757 PF10955.8 gi|347522676|ref|YP_004780246.1| - 0.61 10.4 11.3 4.7 7.5 2.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2757) zf-ribbon_3 PF13248.6 gi|347522676|ref|YP_004780246.1| - 0.66 9.5 7.5 0.72 9.3 0.1 3.3 4 0 0 4 4 4 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|347522676|ref|YP_004780246.1| - 0.7 10.9 9.2 5 8.2 0.1 3.3 3 1 0 3 3 3 0 C2H2-type zinc finger zf-RING_2 PF13639.6 gi|347522676|ref|YP_004780246.1| - 0.86 10.0 9.8 1.5 9.2 9.8 1.4 1 1 0 1 1 1 0 Ring finger domain zf-C3HC4_3 PF13920.6 gi|347522676|ref|YP_004780246.1| - 1.1 9.2 11.0 7.9 6.4 11.0 2.5 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|347522676|ref|YP_004780246.1| - 1.1 8.8 8.5 0.19 11.3 3.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-Di19 PF05605.12 gi|347522676|ref|YP_004780246.1| - 1.3 9.4 0.1 1.3 9.4 0.1 3.1 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_17 PF17120.5 gi|347522676|ref|YP_004780246.1| - 1.3 8.7 8.3 2.5 7.8 3.3 2.1 1 1 1 2 2 2 0 Zinc-ribbon, C4HC2 type Zn-ribbon_8 PF09723.10 gi|347522676|ref|YP_004780246.1| - 3.1 8.0 9.8 1.2 9.3 6.5 2.1 2 1 0 2 2 2 0 Zinc ribbon domain Methyltrans_SAM PF10672.9 gi|347522678|ref|YP_004780248.1| - 9.7e-22 77.4 0.1 1.3e-21 77.0 0.1 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.15 gi|347522678|ref|YP_004780248.1| - 2e-13 50.4 0.0 3.9e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|347522678|ref|YP_004780248.1| - 2.3e-11 43.8 0.2 3.2e-11 43.3 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein PUA_3 PF17785.1 gi|347522678|ref|YP_004780248.1| - 4.1e-08 32.9 0.1 1.2e-07 31.4 0.1 1.8 1 0 0 1 1 1 1 PUA-like domain MTS PF05175.14 gi|347522678|ref|YP_004780248.1| - 7.4e-06 25.6 0.0 1.4e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|347522678|ref|YP_004780248.1| - 2.2e-05 24.0 0.0 3.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PUA PF01472.20 gi|347522678|ref|YP_004780248.1| - 0.0013 18.7 1.2 0.26 11.3 0.1 3.0 3 0 0 3 3 3 1 PUA domain Methyltransf_15 PF09445.10 gi|347522678|ref|YP_004780248.1| - 0.0028 17.3 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|347522678|ref|YP_004780248.1| - 0.0039 16.9 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|347522678|ref|YP_004780248.1| - 0.0083 15.3 0.0 0.017 14.3 0.0 1.5 1 1 1 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_25 PF13649.6 gi|347522678|ref|YP_004780248.1| - 0.013 16.1 0.0 0.029 15.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|347522678|ref|YP_004780248.1| - 0.04 13.6 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase DNA_methylase PF00145.17 gi|347522678|ref|YP_004780248.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Lactamase_B_2 PF12706.7 gi|347522679|ref|YP_004780249.1| - 9.2e-16 57.9 0.0 1e-07 31.7 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347522679|ref|YP_004780249.1| - 3.5e-09 37.0 0.5 3.7e-07 30.4 0.0 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|347522679|ref|YP_004780249.1| - 0.00023 20.8 0.0 0.00045 19.9 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease IRF-3 PF10401.9 gi|347522679|ref|YP_004780249.1| - 0.22 11.3 0.0 0.42 10.4 0.0 1.4 1 0 0 1 1 1 0 Interferon-regulatory factor 3 eIF-1a PF01176.19 gi|347522680|ref|YP_004780250.1| - 0.0027 17.5 0.2 0.0032 17.3 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 MazE_antitoxin PF04014.18 gi|347522680|ref|YP_004780250.1| - 0.037 14.0 0.3 0.063 13.2 0.3 1.4 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DMRL_synthase PF00885.19 gi|347522681|ref|YP_004780251.1| - 3.5e-35 120.9 1.1 4e-35 120.7 1.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Ham1p_like PF01725.16 gi|347522682|ref|YP_004780252.1| - 0.015 15.2 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 Ham1 family SCAB-ABD PF16711.5 gi|347522682|ref|YP_004780252.1| - 0.024 14.5 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein DUF2067 PF09840.9 gi|347522682|ref|YP_004780252.1| - 0.04 13.5 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) TubC_N PF18563.1 gi|347522682|ref|YP_004780252.1| - 0.1 12.6 0.0 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 TubC N-terminal docking domain LigT_PEase PF02834.16 gi|347522683|ref|YP_004780253.1| - 1.6e-30 105.1 0.1 2.7e-14 53.1 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|347522683|ref|YP_004780253.1| - 1.8e-16 60.4 0.0 2.2e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|347522683|ref|YP_004780253.1| - 2.6e-09 37.3 0.0 8.4e-09 35.6 0.0 1.7 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|347522683|ref|YP_004780253.1| - 0.00034 20.2 0.0 0.00041 19.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein DUF2795 PF11387.8 gi|347522684|ref|YP_004780254.1| - 1.5e-12 47.5 1.3 2.7e-07 30.7 0.0 3.5 3 1 0 3 3 3 2 Protein of unknown function (DUF2795) BMFP PF04380.13 gi|347522684|ref|YP_004780254.1| - 1.5e-05 25.4 0.9 0.11 13.0 0.5 2.4 2 0 0 2 2 2 2 Membrane fusogenic activity STAT_alpha PF01017.20 gi|347522684|ref|YP_004780254.1| - 0.0016 18.4 0.0 0.71 9.8 0.0 2.1 2 0 0 2 2 2 2 STAT protein, all-alpha domain DUF724 PF05266.14 gi|347522684|ref|YP_004780254.1| - 0.0022 17.9 0.1 0.95 9.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF724) Linocin_M18 PF04454.12 gi|347522684|ref|YP_004780254.1| - 0.0076 15.6 0.0 1.3 8.3 0.0 2.1 2 0 0 2 2 2 2 Encapsulating protein for peroxidase GvpG PF05120.12 gi|347522684|ref|YP_004780254.1| - 0.0099 15.9 3.1 0.14 12.2 0.2 2.9 2 1 0 2 2 2 1 Gas vesicle protein G DUF1955 PF09205.10 gi|347522684|ref|YP_004780254.1| - 0.013 15.2 0.1 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1955) GAT PF03127.14 gi|347522684|ref|YP_004780254.1| - 0.087 13.1 0.1 2.5 8.5 0.0 2.3 2 0 0 2 2 2 0 GAT domain UMP1 PF05348.11 gi|347522684|ref|YP_004780254.1| - 0.12 12.6 0.0 2.8 8.2 0.0 2.2 1 1 1 2 2 2 0 Proteasome maturation factor UMP1 Maf_N PF08383.11 gi|347522684|ref|YP_004780254.1| - 0.13 12.0 0.7 4.4 7.1 0.1 2.5 2 0 0 2 2 2 0 Maf N-terminal region MKT1_C PF12246.8 gi|347522684|ref|YP_004780254.1| - 0.18 11.0 0.0 1.1 8.4 0.0 1.9 2 0 0 2 2 2 0 Temperature dependent protein affecting M2 dsRNA replication TFA2_Winged_2 PF18121.1 gi|347522684|ref|YP_004780254.1| - 0.26 11.0 4.0 1.9 8.3 0.0 3.1 3 1 1 4 4 4 0 TFA2 Winged helix domain 2 Translin PF01997.16 gi|347522685|ref|YP_004780255.1| - 2e-09 37.7 0.1 6.5e-09 36.1 0.1 1.7 1 1 0 1 1 1 1 Translin family Spectrin_like PF18373.1 gi|347522685|ref|YP_004780255.1| - 0.033 14.3 0.2 0.15 12.1 0.0 2.1 2 0 0 2 2 2 0 Spectrin like domain Wzy_C_2 PF11846.8 gi|347522685|ref|YP_004780255.1| - 0.041 13.8 0.1 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal Serine_rich PF08824.10 gi|347522685|ref|YP_004780255.1| - 0.063 13.3 0.3 0.72 9.8 0.0 2.3 2 1 0 2 2 2 0 Serine rich protein interaction domain TPR_4 PF07721.14 gi|347522685|ref|YP_004780255.1| - 0.14 12.8 1.4 0.31 11.8 0.2 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Com_YlbF PF06133.11 gi|347522686|ref|YP_004780256.1| - 0.13 12.9 0.0 0.17 12.5 0.0 1.1 1 0 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA Macro PF01661.21 gi|347522687|ref|YP_004780257.1| - 4.8e-29 100.8 0.1 7.1e-29 100.3 0.1 1.3 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.6 gi|347522687|ref|YP_004780257.1| - 0.0014 18.0 0.0 0.0051 16.2 0.0 1.8 1 1 0 1 1 1 1 Macro-like domain Spo0A_C PF08769.11 gi|347522687|ref|YP_004780257.1| - 0.065 13.3 0.8 0.91 9.6 0.1 2.8 2 1 1 3 3 3 0 Sporulation initiation factor Spo0A C terminal GCV_H PF01597.19 gi|347522689|ref|YP_004780259.1| - 4.6e-44 149.2 0.8 5.3e-44 149.0 0.8 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|347522689|ref|YP_004780259.1| - 5.5e-05 22.9 0.2 9.7e-05 22.1 0.2 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|347522689|ref|YP_004780259.1| - 0.00034 20.5 0.0 0.00055 19.8 0.0 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain UDG PF03167.19 gi|347522691|ref|YP_004780261.1| - 1.7e-44 151.5 0.0 2.3e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lon_C PF05362.13 gi|347522692|ref|YP_004780262.1| - 2.9e-07 30.2 0.5 6.9e-07 29.0 0.5 1.6 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF480 PF04337.12 gi|347522693|ref|YP_004780263.1| - 0.01 16.0 0.1 0.016 15.3 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF480 HTH_39 PF14090.6 gi|347522693|ref|YP_004780263.1| - 0.086 12.6 0.1 0.24 11.1 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain G-gamma PF00631.22 gi|347522693|ref|YP_004780263.1| - 0.5 10.4 3.1 0.55 10.3 0.8 2.1 2 0 0 2 2 2 0 GGL domain Vir_act_alpha_C PF10400.9 gi|347522693|ref|YP_004780263.1| - 1.4 9.7 4.8 1 10.1 0.6 2.2 1 1 1 2 2 2 0 Virulence activator alpha C-term Met_10 PF02475.16 gi|347522694|ref|YP_004780264.1| - 1.2e-49 168.8 0.0 1.8e-49 168.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|347522694|ref|YP_004780264.1| - 0.00088 18.5 0.1 0.0011 18.2 0.1 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|347522694|ref|YP_004780264.1| - 0.0013 18.3 0.0 0.0021 17.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|347522694|ref|YP_004780264.1| - 0.0028 17.1 0.0 0.0041 16.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|347522694|ref|YP_004780264.1| - 0.044 13.7 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Lycopene_cycl PF05834.12 gi|347522695|ref|YP_004780265.1| - 2.9e-15 56.2 0.6 1.1e-11 44.4 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|347522695|ref|YP_004780265.1| - 9.4e-08 32.0 1.8 0.0037 16.9 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|347522695|ref|YP_004780265.1| - 1.2e-07 30.9 0.2 0.00037 19.3 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.14 gi|347522695|ref|YP_004780265.1| - 9.2e-07 28.4 0.9 0.0072 15.6 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|347522695|ref|YP_004780265.1| - 3.2e-06 26.6 3.1 0.014 14.6 0.4 3.0 1 1 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|347522695|ref|YP_004780265.1| - 5.6e-05 22.5 0.4 0.00055 19.3 0.4 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|347522695|ref|YP_004780265.1| - 0.0001 21.8 0.3 0.003 16.9 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|347522695|ref|YP_004780265.1| - 0.00047 19.1 0.0 0.061 12.2 0.0 2.3 2 1 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|347522695|ref|YP_004780265.1| - 0.0046 17.0 0.4 2.3 8.2 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Glu_dehyd_C PF16912.5 gi|347522695|ref|YP_004780265.1| - 0.016 14.7 0.0 1.1 8.7 0.0 2.9 3 0 0 3 3 3 0 Glucose dehydrogenase C-terminus NAD_binding_8 PF13450.6 gi|347522695|ref|YP_004780265.1| - 0.027 14.7 0.0 0.076 13.3 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|347522695|ref|YP_004780265.1| - 0.032 13.3 0.4 1.2 8.1 0.0 2.5 3 0 0 3 3 3 0 FAD binding domain Thi4 PF01946.17 gi|347522695|ref|YP_004780265.1| - 0.082 12.1 0.1 0.12 11.6 0.1 1.4 1 1 0 1 1 1 0 Thi4 family PAPS_reduct PF01507.19 gi|347522696|ref|YP_004780266.1| - 4.1e-29 101.8 0.0 9.4e-29 100.7 0.0 1.6 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|347522696|ref|YP_004780266.1| - 1.1e-05 25.0 0.0 2.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Diphthamide synthase NAD_synthase PF02540.17 gi|347522696|ref|YP_004780266.1| - 1.3e-05 24.5 0.0 2.4e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|347522696|ref|YP_004780266.1| - 0.0082 15.7 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Reo_sigmaC PF04582.12 gi|347522696|ref|YP_004780266.1| - 0.038 14.2 0.0 0.058 13.7 0.0 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein C-terminal domain ATP_bind_3 PF01171.20 gi|347522696|ref|YP_004780266.1| - 0.086 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 PP-loop family DUF354 PF04007.12 gi|347522697|ref|YP_004780267.1| - 6.4e-39 133.9 0.0 7.4e-39 133.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|347522697|ref|YP_004780267.1| - 2.3e-05 24.4 2.4 0.0001 22.3 0.8 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|347522697|ref|YP_004780267.1| - 4e-05 24.1 2.0 0.00016 22.1 1.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|347522697|ref|YP_004780267.1| - 0.00056 20.0 0.0 0.016 15.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Epimerase_2 PF02350.19 gi|347522697|ref|YP_004780267.1| - 0.041 12.7 0.0 0.11 11.4 0.0 1.6 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_28 PF03033.20 gi|347522697|ref|YP_004780267.1| - 0.076 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF4142 PF13628.6 gi|347522698|ref|YP_004780268.1| - 0.002 18.4 0.2 0.0034 17.6 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4142) DUF2710 PF10921.8 gi|347522698|ref|YP_004780268.1| - 0.004 17.6 0.8 0.0059 17.0 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2710) Ferritin PF00210.24 gi|347522698|ref|YP_004780268.1| - 0.029 14.3 0.4 0.048 13.6 0.2 1.5 1 1 1 2 2 2 0 Ferritin-like domain DELLA PF12041.8 gi|347522698|ref|YP_004780268.1| - 0.1 12.5 0.9 9.8 6.1 0.0 2.9 3 1 1 4 4 4 0 Transcriptional regulator DELLA protein N terminal DUF3368 PF11848.8 gi|347522698|ref|YP_004780268.1| - 0.12 12.2 0.1 1.1 9.1 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3368) DUF1451 PF07295.11 gi|347522698|ref|YP_004780268.1| - 0.18 11.9 1.2 0.26 11.3 1.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DegT_DnrJ_EryC1 PF01041.17 gi|347522699|ref|YP_004780269.1| - 3.7e-130 434.4 0.0 4.2e-130 434.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|347522699|ref|YP_004780269.1| - 5.7e-11 42.2 0.0 8.7e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|347522699|ref|YP_004780269.1| - 1.3e-07 31.2 2.8 3.6e-07 29.8 2.8 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|347522699|ref|YP_004780269.1| - 2.8e-07 29.9 0.2 2.8e-06 26.5 0.1 1.9 2 0 0 2 2 2 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|347522699|ref|YP_004780269.1| - 0.0017 17.1 0.0 0.0033 16.2 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.20 gi|347522699|ref|YP_004780269.1| - 0.0026 16.3 0.0 0.0034 16.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF1967 PF09269.11 gi|347522699|ref|YP_004780269.1| - 0.041 13.8 0.0 3 7.9 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) RNA_Me_trans PF04252.13 gi|347522700|ref|YP_004780270.1| - 3e-09 36.7 0.0 4.6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase SepRS_C PF18006.1 gi|347522700|ref|YP_004780270.1| - 0.27 11.4 2.5 15 5.8 0.0 2.6 2 0 0 2 2 2 0 O-phosphoseryl-tRNA synthetase C-terminal domain Pribosyltran PF00156.27 gi|347522701|ref|YP_004780271.1| - 8.4e-17 61.1 0.0 1.2e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|347522701|ref|YP_004780271.1| - 0.0037 16.7 0.0 0.005 16.3 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase GntR PF00392.21 gi|347522701|ref|YP_004780271.1| - 0.09 12.4 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Pribosyl_synth PF14572.6 gi|347522701|ref|YP_004780271.1| - 0.17 11.9 0.0 0.25 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Cupin_2 PF07883.11 gi|347522702|ref|YP_004780272.1| - 1.4e-21 76.0 0.7 2e-21 75.4 0.7 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|347522702|ref|YP_004780272.1| - 6.4e-12 45.6 0.0 8.7e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|347522702|ref|YP_004780272.1| - 1.1e-08 34.8 0.0 1.5e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_1 PF00190.22 gi|347522702|ref|YP_004780272.1| - 1.2e-07 31.4 0.0 1.9e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|347522702|ref|YP_004780272.1| - 0.00018 21.5 0.1 0.00019 21.3 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase GPI PF06560.11 gi|347522702|ref|YP_004780272.1| - 0.00045 19.5 0.0 0.00064 19.0 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_3 PF05899.12 gi|347522702|ref|YP_004780272.1| - 0.0024 17.5 0.1 0.0031 17.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|347522702|ref|YP_004780272.1| - 0.005 16.3 0.0 0.007 15.8 0.0 1.2 1 0 0 1 1 1 1 PCO_ADO Auxin_BP PF02041.16 gi|347522702|ref|YP_004780272.1| - 0.018 14.7 0.1 0.055 13.1 0.1 1.8 1 1 0 1 1 1 0 Auxin binding protein ARD PF03079.14 gi|347522702|ref|YP_004780272.1| - 0.03 14.5 0.2 0.051 13.7 0.2 1.4 1 0 0 1 1 1 0 ARD/ARD' family Ectoine_synth PF06339.12 gi|347522702|ref|YP_004780272.1| - 0.04 14.1 0.0 0.046 13.9 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase DMSP_lyase PF16867.5 gi|347522702|ref|YP_004780272.1| - 0.17 11.6 0.0 0.23 11.1 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Pyr_redox_2 PF07992.14 gi|347522703|ref|YP_004780273.1| - 1.7e-48 165.4 2.3 2e-48 165.1 2.3 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|347522703|ref|YP_004780273.1| - 1.9e-16 60.4 10.5 3.7e-14 53.1 0.9 3.3 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|347522703|ref|YP_004780273.1| - 1.5e-10 41.2 12.2 0.001 18.7 0.1 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|347522703|ref|YP_004780273.1| - 2.1e-06 27.2 2.7 0.00039 19.8 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|347522703|ref|YP_004780273.1| - 0.00081 19.0 2.0 0.0067 16.0 0.1 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.6 gi|347522703|ref|YP_004780273.1| - 0.0013 18.0 0.6 0.16 11.1 0.1 2.8 1 1 2 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|347522703|ref|YP_004780273.1| - 0.0014 17.8 7.8 1.1 8.2 1.9 4.4 4 1 1 5 5 5 2 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|347522703|ref|YP_004780273.1| - 0.0083 15.2 3.5 0.015 14.3 0.2 2.7 2 2 0 3 3 3 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|347522703|ref|YP_004780273.1| - 0.011 15.9 1.3 0.17 12.1 0.0 2.6 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|347522703|ref|YP_004780273.1| - 0.013 15.5 4.6 5.5 6.9 0.0 4.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|347522703|ref|YP_004780273.1| - 0.013 14.8 5.7 0.32 10.3 0.6 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|347522703|ref|YP_004780273.1| - 0.19 12.0 0.2 0.19 12.0 0.2 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain ThiF PF00899.21 gi|347522703|ref|YP_004780273.1| - 0.39 10.0 1.5 3.4 6.9 0.0 2.4 2 0 0 2 2 2 0 ThiF family HI0933_like PF03486.14 gi|347522703|ref|YP_004780273.1| - 0.8 8.3 6.4 2.4 6.8 0.3 3.4 3 1 1 4 4 4 0 HI0933-like protein 3HCDH_N PF02737.18 gi|347522703|ref|YP_004780273.1| - 1.1 9.1 6.0 0.064 13.1 0.8 1.6 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|347522703|ref|YP_004780273.1| - 2.5 7.1 7.2 22 4.0 0.1 3.1 3 0 0 3 3 3 0 FAD binding domain DUF460 PF04312.13 gi|347522704|ref|YP_004780274.1| - 8.6e-49 164.9 0.3 2.9e-48 163.2 0.0 2.1 3 0 0 3 3 1 1 Protein of unknown function (DUF460) TolA_bind_tri PF16331.5 gi|347522704|ref|YP_004780274.1| - 0.00012 22.1 2.1 0.00012 22.1 2.1 2.7 2 1 1 3 3 2 1 TolA binding protein trimerisation DUF4407 PF14362.6 gi|347522704|ref|YP_004780274.1| - 0.0037 16.7 5.7 0.0074 15.7 5.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Selenoprotein_S PF06936.11 gi|347522704|ref|YP_004780274.1| - 0.0095 15.8 9.8 0.0095 15.8 9.8 2.2 2 1 1 3 3 2 1 Selenoprotein S (SelS) HR1 PF02185.16 gi|347522704|ref|YP_004780274.1| - 0.0096 16.0 18.4 0.038 14.1 2.3 3.4 2 1 1 3 3 3 2 Hr1 repeat PucR PF07905.11 gi|347522704|ref|YP_004780274.1| - 0.029 14.6 0.5 3.5 7.9 0.1 3.1 4 0 0 4 4 2 0 Purine catabolism regulatory protein-like family Macoilin PF09726.9 gi|347522704|ref|YP_004780274.1| - 0.039 12.5 11.5 0.065 11.8 11.5 1.3 1 0 0 1 1 1 0 Macoilin family V_ATPase_I PF01496.19 gi|347522704|ref|YP_004780274.1| - 0.044 11.7 4.3 0.061 11.3 4.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4129 PF13559.6 gi|347522704|ref|YP_004780274.1| - 0.088 13.1 2.6 0.58 10.5 0.1 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) MDM1 PF15501.6 gi|347522704|ref|YP_004780274.1| - 0.098 11.8 5.1 0.13 11.4 5.1 1.1 1 0 0 1 1 1 0 Nuclear protein MDM1 FlaC_arch PF05377.11 gi|347522704|ref|YP_004780274.1| - 0.12 12.8 9.3 0.079 13.4 1.8 3.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Cnn_1N PF07989.11 gi|347522704|ref|YP_004780274.1| - 0.15 12.3 13.5 0.76 10.0 13.5 2.2 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 SlyX PF04102.12 gi|347522704|ref|YP_004780274.1| - 0.22 12.2 8.5 8.8 7.0 0.7 3.0 1 1 1 2 2 2 0 SlyX DUF16 PF01519.16 gi|347522704|ref|YP_004780274.1| - 0.24 11.9 12.6 1 9.9 0.8 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 Effector_1 PF04518.12 gi|347522704|ref|YP_004780274.1| - 0.29 10.2 7.7 0.45 9.6 7.7 1.2 1 0 0 1 1 1 0 Effector from type III secretion system SKA2 PF16740.5 gi|347522704|ref|YP_004780274.1| - 0.46 10.3 14.3 1.3 8.9 10.7 2.9 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Med30 PF11315.8 gi|347522704|ref|YP_004780274.1| - 0.47 10.6 9.0 0.92 9.7 9.0 1.5 1 0 0 1 1 1 0 Mediator complex subunit 30 HIP1_clath_bdg PF16515.5 gi|347522704|ref|YP_004780274.1| - 0.49 11.0 17.5 1 10.0 8.5 2.7 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Occludin_ELL PF07303.13 gi|347522704|ref|YP_004780274.1| - 0.62 10.8 12.0 1.2 9.9 10.6 2.1 2 0 0 2 2 2 0 Occludin homology domain Pox_A_type_inc PF04508.12 gi|347522704|ref|YP_004780274.1| - 0.68 9.9 7.5 0.54 10.2 1.9 3.0 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Bcr-Abl_Oligo PF09036.10 gi|347522704|ref|YP_004780274.1| - 0.84 9.7 8.0 1.1 9.4 2.3 3.0 1 1 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain BLOC1_2 PF10046.9 gi|347522704|ref|YP_004780274.1| - 0.84 10.0 9.3 1 9.7 8.1 1.8 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Y2_Tnp PF04986.13 gi|347522704|ref|YP_004780274.1| - 0.9 9.6 4.0 2.1 8.4 4.0 1.6 1 0 0 1 1 1 0 Putative transposase Alb1 PF09135.11 gi|347522704|ref|YP_004780274.1| - 0.95 10.4 5.4 1.4 9.8 4.2 2.0 1 1 0 1 1 1 0 Alb1 Snapin_Pallidin PF14712.6 gi|347522704|ref|YP_004780274.1| - 1 9.8 11.5 1.5 9.3 8.2 2.8 1 1 2 3 3 3 0 Snapin/Pallidin HAUS-augmin3 PF14932.6 gi|347522704|ref|YP_004780274.1| - 1 8.9 13.8 0.12 11.9 9.5 1.6 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 DUF4349 PF14257.6 gi|347522704|ref|YP_004780274.1| - 1.3 8.4 9.5 11 5.4 9.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) DUF1664 PF07889.12 gi|347522704|ref|YP_004780274.1| - 1.5 8.9 5.4 7.1 6.7 5.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) V-SNARE PF05008.15 gi|347522704|ref|YP_004780274.1| - 1.6 9.1 16.9 0.88 10.0 12.1 2.7 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus COG2 PF06148.11 gi|347522704|ref|YP_004780274.1| - 1.9 8.6 10.0 11 6.1 3.3 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FapA PF03961.13 gi|347522704|ref|YP_004780274.1| - 1.9 7.0 14.0 2.7 6.5 13.3 1.6 1 1 0 1 1 1 0 Flagellar Assembly Protein A AAA_11 PF13086.6 gi|347522704|ref|YP_004780274.1| - 3.6 7.3 9.0 6.6 6.4 9.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4446 PF14584.6 gi|347522704|ref|YP_004780274.1| - 8.2 6.4 10.1 9.6 6.2 1.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) AdoMet_Synthase PF01941.19 gi|347522705|ref|YP_004780275.1| - 3.6e-176 585.8 3.9 4e-176 585.6 3.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|347522705|ref|YP_004780275.1| - 0.26 12.0 1.4 0.91 10.2 0.0 2.7 3 1 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain BON PF04972.17 gi|347522705|ref|YP_004780275.1| - 1.1 9.6 4.0 1 9.7 0.1 2.9 3 0 0 3 3 3 0 BON domain LSM PF01423.22 gi|347522706|ref|YP_004780276.1| - 2.9e-17 62.1 0.5 3.8e-17 61.7 0.5 1.2 1 0 0 1 1 1 1 LSM domain Elf1 PF05129.13 gi|347522707|ref|YP_004780277.1| - 5.9e-21 74.3 0.0 7.4e-21 74.0 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Nop10p PF04135.12 gi|347522707|ref|YP_004780277.1| - 0.008 16.2 0.1 0.27 11.3 0.0 2.4 2 0 0 2 2 2 1 Nucleolar RNA-binding protein, Nop10p family HydF_tetramer PF18133.1 gi|347522707|ref|YP_004780277.1| - 0.031 14.0 0.1 0.046 13.5 0.1 1.2 1 0 0 1 1 1 0 Hydrogen maturase F tetramerization domain zf-CHY PF05495.12 gi|347522707|ref|YP_004780277.1| - 0.099 13.1 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 CHY zinc finger Lar_restr_allev PF14354.6 gi|347522707|ref|YP_004780277.1| - 0.11 12.8 0.8 0.37 11.2 1.0 1.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|347522707|ref|YP_004780277.1| - 0.19 11.3 2.8 0.99 9.0 2.8 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Rubredoxin PF00301.20 gi|347522707|ref|YP_004780277.1| - 0.26 11.3 1.5 0.58 10.2 0.2 2.0 2 0 0 2 2 2 0 Rubredoxin zf-CSL PF05207.13 gi|347522707|ref|YP_004780277.1| - 0.26 11.0 1.2 0.33 10.7 0.3 1.6 2 0 0 2 2 2 0 CSL zinc finger PcrB PF01884.17 gi|347522708|ref|YP_004780278.1| - 2.6e-50 171.0 0.0 3.2e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|347522708|ref|YP_004780278.1| - 1.8e-08 34.1 0.0 2.8e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|347522708|ref|YP_004780278.1| - 0.0026 17.0 0.1 0.0038 16.5 0.1 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|347522708|ref|YP_004780278.1| - 0.0035 16.6 0.1 0.0054 15.9 0.1 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Ribul_P_3_epim PF00834.19 gi|347522708|ref|YP_004780278.1| - 0.0039 16.6 0.1 0.032 13.6 0.1 2.3 3 0 0 3 3 3 1 Ribulose-phosphate 3 epimerase family IMPDH PF00478.25 gi|347522708|ref|YP_004780278.1| - 0.0043 16.1 0.0 0.0062 15.6 0.0 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|347522708|ref|YP_004780278.1| - 0.007 15.6 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase ThiG PF05690.14 gi|347522708|ref|YP_004780278.1| - 0.038 13.3 0.1 0.13 11.6 0.1 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG MoCF_biosynth PF00994.24 gi|347522708|ref|YP_004780278.1| - 0.11 12.2 0.2 0.31 10.7 0.0 1.8 2 1 0 2 2 2 0 Probable molybdopterin binding domain MazG PF03819.17 gi|347522709|ref|YP_004780279.1| - 2.7e-12 46.7 0.1 3.2e-12 46.4 0.1 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|347522709|ref|YP_004780279.1| - 5.5e-07 29.7 0.1 6.7e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|347522709|ref|YP_004780279.1| - 9e-06 26.1 0.2 1.1e-05 25.8 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase nsp8 PF08717.10 gi|347522709|ref|YP_004780279.1| - 0.15 11.9 0.0 0.18 11.7 0.0 1.1 1 0 0 1 1 1 0 nsp8 replicase Sec61_beta PF03911.16 gi|347522710|ref|YP_004780280.1| - 4e-15 55.5 1.0 4.7e-15 55.3 1.0 1.1 1 0 0 1 1 1 1 Sec61beta family Ribo_biogen_C PF04034.13 gi|347522711|ref|YP_004780281.1| - 5.3e-39 132.8 0.0 6.5e-39 132.6 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|347522711|ref|YP_004780281.1| - 5.4e-05 22.9 0.0 9.7e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Got1 PF04178.12 gi|347522711|ref|YP_004780281.1| - 0.11 12.9 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 Got1/Sft2-like family AsnC_trans_reg PF01037.21 gi|347522712|ref|YP_004780282.1| - 9.9e-16 57.5 0.5 1.1e-15 57.3 0.5 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|347522712|ref|YP_004780282.1| - 0.0053 16.7 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|347522712|ref|YP_004780282.1| - 0.0076 16.3 0.5 0.012 15.6 0.5 1.3 1 1 0 1 1 1 1 NapD protein DUF1743 PF08489.11 gi|347522713|ref|YP_004780283.1| - 2.6e-24 85.5 0.0 5e-24 84.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) PhnA_Zn_Ribbon PF08274.12 gi|347522713|ref|YP_004780283.1| - 0.0055 16.6 1.0 0.0097 15.8 1.0 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|347522713|ref|YP_004780283.1| - 0.041 13.9 2.6 0.084 12.9 2.6 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|347522713|ref|YP_004780283.1| - 0.051 13.7 1.7 3.9 7.7 0.3 2.6 2 0 0 2 2 2 0 Zinc ribbon domain MCM_OB PF17207.3 gi|347522713|ref|YP_004780283.1| - 0.083 12.7 0.1 7.6 6.4 0.0 2.3 2 0 0 2 2 2 0 MCM OB domain Desulfoferrod_N PF06397.12 gi|347522713|ref|YP_004780283.1| - 0.16 11.6 0.9 0.31 10.7 0.9 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain PADR1 PF08063.12 gi|347522713|ref|YP_004780283.1| - 0.23 11.3 1.0 0.41 10.5 1.0 1.4 1 0 0 1 1 1 0 PADR1 (NUC008) domain zf-Mss51 PF13824.6 gi|347522713|ref|YP_004780283.1| - 0.28 11.3 1.3 0.65 10.1 1.3 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.12 gi|347522713|ref|YP_004780283.1| - 0.48 10.0 2.2 1 8.9 2.2 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|347522713|ref|YP_004780283.1| - 9.3 6.4 6.0 4.1 7.6 0.6 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain CBS PF00571.28 gi|347522714|ref|YP_004780284.1| - 3.1e-22 78.8 10.8 5e-11 42.9 1.4 2.6 3 0 0 3 3 3 2 CBS domain HTH_3 PF01381.22 gi|347522714|ref|YP_004780284.1| - 4.6e-16 58.6 1.1 7.9e-16 57.9 1.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|347522714|ref|YP_004780284.1| - 9.2e-15 54.7 2.7 1.7e-14 53.9 2.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|347522714|ref|YP_004780284.1| - 6.9e-10 38.8 0.5 1.2e-09 38.1 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|347522714|ref|YP_004780284.1| - 2.3e-05 24.8 0.1 4.8e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.6 gi|347522714|ref|YP_004780284.1| - 9e-05 22.2 0.6 0.00017 21.2 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|347522714|ref|YP_004780284.1| - 0.00014 21.7 0.3 0.00022 21.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|347522714|ref|YP_004780284.1| - 0.0003 20.9 1.3 0.01 15.9 0.1 2.2 2 0 0 2 2 2 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_25 PF13413.6 gi|347522714|ref|YP_004780284.1| - 0.00072 19.4 0.8 0.0015 18.3 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|347522714|ref|YP_004780284.1| - 0.076 12.6 2.5 0.13 11.9 0.2 2.4 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding RE_XamI PF09572.10 gi|347522714|ref|YP_004780284.1| - 0.092 12.4 0.2 0.14 11.8 0.2 1.3 1 1 0 1 1 1 0 XamI restriction endonuclease Thioredoxin_3 PF13192.6 gi|347522714|ref|YP_004780284.1| - 0.1 12.7 0.7 1.6 8.9 0.3 2.3 2 0 0 2 2 2 0 Thioredoxin domain PspB PF06667.12 gi|347522714|ref|YP_004780284.1| - 0.13 12.4 0.2 0.22 11.6 0.2 1.4 1 0 0 1 1 1 0 Phage shock protein B Diphthami_syn_2 PF01902.17 gi|347522716|ref|YP_004780286.1| - 2.1e-30 105.9 0.0 2.2e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase eIF-5a PF01287.20 gi|347522717|ref|YP_004780287.1| - 4.6e-07 29.8 0.1 7.8e-07 29.1 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|347522717|ref|YP_004780287.1| - 5.1e-07 29.6 0.4 2.2e-05 24.4 0.1 2.3 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|347522717|ref|YP_004780287.1| - 0.15 12.1 0.3 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 Elongation factor P (EF-P) OB domain SRP54 PF00448.22 gi|347522718|ref|YP_004780288.1| - 3.7e-70 235.6 0.1 5.2e-70 235.1 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|347522718|ref|YP_004780288.1| - 2e-27 95.7 0.0 1.4e-26 93.0 0.0 2.3 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|347522718|ref|YP_004780288.1| - 6.8e-14 51.8 0.1 3.4e-13 49.6 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|347522718|ref|YP_004780288.1| - 8.1e-06 25.9 0.0 1.7e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|347522718|ref|YP_004780288.1| - 9.6e-05 22.7 0.9 0.0013 19.0 0.0 2.9 4 0 0 4 4 3 1 AAA domain ParA PF10609.9 gi|347522718|ref|YP_004780288.1| - 0.00026 20.5 0.0 0.00045 19.7 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|347522718|ref|YP_004780288.1| - 0.0003 20.4 0.1 0.001 18.7 0.1 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|347522718|ref|YP_004780288.1| - 0.00054 19.3 0.0 0.0014 18.0 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|347522718|ref|YP_004780288.1| - 0.0013 17.8 1.0 0.0037 16.3 1.0 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|347522718|ref|YP_004780288.1| - 0.0014 18.8 0.0 0.0043 17.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347522718|ref|YP_004780288.1| - 0.002 17.9 1.4 0.0047 16.7 0.4 2.1 2 1 0 2 2 2 1 AAA domain MobB PF03205.14 gi|347522718|ref|YP_004780288.1| - 0.004 17.0 0.3 0.012 15.5 0.1 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|347522718|ref|YP_004780288.1| - 0.0047 17.5 0.0 0.015 15.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|347522718|ref|YP_004780288.1| - 0.0062 16.3 0.0 0.02 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|347522718|ref|YP_004780288.1| - 0.011 15.8 0.2 0.18 11.9 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase APS_kinase PF01583.20 gi|347522718|ref|YP_004780288.1| - 0.011 15.6 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_28 PF13521.6 gi|347522718|ref|YP_004780288.1| - 0.019 15.2 0.0 0.061 13.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|347522718|ref|YP_004780288.1| - 0.024 14.6 0.1 0.049 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain PFOR_II PF17147.4 gi|347522718|ref|YP_004780288.1| - 0.034 14.5 0.2 0.61 10.4 0.1 2.5 1 1 1 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II NTPase_1 PF03266.15 gi|347522718|ref|YP_004780288.1| - 0.046 13.6 1.5 0.4 10.6 0.0 3.1 4 1 1 5 5 4 0 NTPase AAA_17 PF13207.6 gi|347522718|ref|YP_004780288.1| - 0.051 14.0 3.3 0.055 13.9 0.4 2.6 3 1 0 3 3 2 0 AAA domain ATPase PF06745.13 gi|347522718|ref|YP_004780288.1| - 0.057 12.7 0.1 0.21 10.9 0.1 2.1 1 1 0 1 1 1 0 KaiC AAA_16 PF13191.6 gi|347522718|ref|YP_004780288.1| - 0.061 13.7 0.2 0.33 11.3 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|347522718|ref|YP_004780288.1| - 0.063 13.2 0.2 0.22 11.4 0.2 1.9 2 0 0 2 2 1 0 NACHT domain ArgoMid PF16487.5 gi|347522718|ref|YP_004780288.1| - 0.078 13.2 0.0 2.6 8.4 0.0 2.6 2 0 0 2 2 2 0 Mid domain of argonaute AAA_5 PF07728.14 gi|347522718|ref|YP_004780288.1| - 0.11 12.5 0.9 1 9.3 0.1 2.7 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) CLP1_P PF16575.5 gi|347522718|ref|YP_004780288.1| - 0.11 12.3 0.0 9.7 5.9 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF373 PF04123.13 gi|347522718|ref|YP_004780288.1| - 0.11 11.9 0.1 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) PduV-EutP PF10662.9 gi|347522718|ref|YP_004780288.1| - 0.19 11.4 0.4 1.2 8.9 0.0 2.3 2 1 1 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.6 gi|347522718|ref|YP_004780288.1| - 0.25 10.9 1.4 1.9 8.0 1.4 2.5 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|347522718|ref|YP_004780288.1| - 0.61 9.7 2.7 0.41 10.3 0.1 2.1 2 0 0 2 2 1 0 Thymidylate kinase Methyltrn_RNA_2 PF04013.12 gi|347522719|ref|YP_004780289.1| - 0.023 14.4 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase TubC_N PF18563.1 gi|347522719|ref|YP_004780289.1| - 0.038 14.0 0.0 0.088 12.8 0.0 1.6 1 0 0 1 1 1 0 TubC N-terminal docking domain THUMP PF02926.17 gi|347522720|ref|YP_004780290.1| - 5.6e-17 62.2 0.3 5.6e-17 62.2 0.3 2.2 2 1 0 2 2 2 1 THUMP domain TF_Zn_Ribbon PF08271.12 gi|347522720|ref|YP_004780290.1| - 0.47 10.0 1.7 0.59 9.7 0.3 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding Rad50_zn_hook PF04423.14 gi|347522720|ref|YP_004780290.1| - 5.9 6.8 4.8 2 8.3 0.0 2.6 3 0 0 3 3 3 0 Rad50 zinc hook motif Ribosomal_L21e PF01157.18 gi|347522721|ref|YP_004780291.1| - 1.4e-38 130.8 2.2 1.6e-38 130.6 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|347522722|ref|YP_004780292.1| - 5.8e-12 46.0 0.1 6.8e-12 45.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|347522723|ref|YP_004780293.1| - 1e-57 195.0 1.6 1.3e-57 194.7 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|347522723|ref|YP_004780293.1| - 3.7e-05 23.9 0.0 9.5e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|347522723|ref|YP_004780293.1| - 0.0058 16.9 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|347522723|ref|YP_004780293.1| - 0.049 14.2 0.3 0.23 12.1 0.1 1.9 1 1 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|347522724|ref|YP_004780294.1| - 7.1e-31 107.2 0.0 8.4e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|347522724|ref|YP_004780294.1| - 0.043 14.4 0.0 0.096 13.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347522724|ref|YP_004780294.1| - 0.047 14.4 0.0 0.083 13.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SpoU_methylase PF00588.19 gi|347522725|ref|YP_004780295.1| - 4e-34 117.8 0.0 6.5e-34 117.1 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|347522725|ref|YP_004780295.1| - 2.4e-06 27.5 0.0 3.1e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase UPF0020 PF01170.18 gi|347522726|ref|YP_004780296.1| - 3.7e-42 144.2 0.0 2.2e-41 141.8 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|347522726|ref|YP_004780296.1| - 3.2e-16 59.7 0.3 5.6e-16 59.0 0.3 1.5 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|347522726|ref|YP_004780296.1| - 2.4e-05 23.9 0.0 4e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|347522726|ref|YP_004780296.1| - 3.8e-05 24.3 0.0 0.00014 22.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|347522726|ref|YP_004780296.1| - 5.5e-05 23.0 0.1 0.0001 22.2 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|347522726|ref|YP_004780296.1| - 0.0027 17.4 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|347522726|ref|YP_004780296.1| - 0.012 14.9 0.0 0.039 13.2 0.0 1.7 1 1 0 1 1 1 0 N-6 DNA Methylase PrmA PF06325.13 gi|347522726|ref|YP_004780296.1| - 0.031 13.7 0.0 0.049 13.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|347522726|ref|YP_004780296.1| - 0.049 13.2 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|347522726|ref|YP_004780296.1| - 0.12 12.3 0.0 0.52 10.2 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain N6-adenineMlase PF10237.9 gi|347522726|ref|YP_004780296.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Ribosomal_L16 PF00252.18 gi|347522727|ref|YP_004780297.1| - 2.4e-37 127.9 0.0 2.9e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e ArfA PF03889.13 gi|347522727|ref|YP_004780297.1| - 0.014 14.9 0.1 0.051 13.1 0.0 2.0 2 0 0 2 2 2 0 Alternative ribosome-rescue factor A Diphthamide_syn PF01866.17 gi|347522728|ref|YP_004780298.1| - 5.7e-54 183.6 0.0 7e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.14 gi|347522729|ref|YP_004780299.1| - 5.1e-12 45.7 0.0 9.1e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|347522729|ref|YP_004780299.1| - 1.7e-08 35.0 0.0 3.6e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347522729|ref|YP_004780299.1| - 7.9e-07 29.7 0.0 1.7e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|347522729|ref|YP_004780299.1| - 1.8e-06 27.8 0.0 4.5e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|347522729|ref|YP_004780299.1| - 2e-05 24.2 0.0 2.7e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|347522729|ref|YP_004780299.1| - 0.00013 21.8 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|347522729|ref|YP_004780299.1| - 0.0042 17.0 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347522729|ref|YP_004780299.1| - 0.0062 17.2 0.0 0.024 15.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|347522729|ref|YP_004780299.1| - 0.017 15.1 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.11 gi|347522729|ref|YP_004780299.1| - 0.03 13.9 0.3 0.051 13.1 0.0 1.7 2 0 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) AdoMet_MTase PF07757.13 gi|347522729|ref|YP_004780299.1| - 0.05 13.9 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase ECR1_N PF14382.6 gi|347522731|ref|YP_004780301.1| - 4.9e-09 35.8 0.3 4.9e-09 35.8 0.3 2.5 3 0 0 3 3 3 1 Exosome complex exonuclease RRP4 N-terminal region Auto_anti-p27 PF06677.12 gi|347522731|ref|YP_004780301.1| - 0.0044 17.1 1.4 0.0044 17.1 1.4 1.6 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.11 gi|347522731|ref|YP_004780301.1| - 0.0061 16.2 1.2 0.01 15.4 1.2 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|347522731|ref|YP_004780301.1| - 0.01 15.8 0.5 0.018 15.1 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon S1 PF00575.23 gi|347522731|ref|YP_004780301.1| - 0.013 15.9 0.0 0.044 14.1 0.0 1.9 2 0 0 2 2 2 0 S1 RNA binding domain zinc_ribbon_2 PF13240.6 gi|347522731|ref|YP_004780301.1| - 0.062 13.0 1.0 0.6 9.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347522731|ref|YP_004780301.1| - 0.075 13.0 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2318 PF10080.9 gi|347522731|ref|YP_004780301.1| - 0.091 12.9 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Zn_ribbon_recom PF13408.6 gi|347522731|ref|YP_004780301.1| - 0.12 12.9 0.8 0.25 11.9 0.8 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF2067 PF09840.9 gi|347522732|ref|YP_004780302.1| - 1.9e-55 187.3 2.2 2.2e-55 187.1 2.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) EccE PF11203.8 gi|347522732|ref|YP_004780302.1| - 0.049 14.0 0.4 0.18 12.2 0.4 1.9 1 1 0 1 1 1 0 Putative type VII ESX secretion system translocon, EccE RNA_pol_L_2 PF13656.6 gi|347522733|ref|YP_004780303.1| - 1.7e-20 72.6 0.0 1.9e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|347522733|ref|YP_004780303.1| - 0.00012 21.5 0.0 0.00026 20.4 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.18 gi|347522734|ref|YP_004780304.1| - 1e-23 82.9 13.1 2.8e-21 75.1 4.2 3.1 3 0 0 3 3 3 2 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|347522734|ref|YP_004780304.1| - 1.3e-06 28.1 0.5 1.3e-06 28.1 0.5 2.7 3 0 0 3 3 2 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|347522734|ref|YP_004780304.1| - 5e-06 26.1 12.6 0.15 11.8 0.3 4.2 4 0 0 4 4 4 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|347522734|ref|YP_004780304.1| - 7e-06 25.5 8.0 0.013 15.0 0.1 3.2 2 2 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|347522734|ref|YP_004780304.1| - 2.9e-05 23.9 13.9 0.06 13.3 0.8 4.2 4 0 0 4 4 4 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|347522734|ref|YP_004780304.1| - 0.00015 21.7 15.7 0.0013 18.7 1.4 3.2 2 1 1 3 3 3 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|347522734|ref|YP_004780304.1| - 0.00019 21.4 9.9 0.0017 18.3 1.0 2.7 2 1 0 2 2 2 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|347522734|ref|YP_004780304.1| - 0.00032 20.6 10.7 0.016 15.1 1.0 2.6 2 1 1 3 3 3 2 Putative transposase DNA-binding domain zinc_ribbon_10 PF10058.9 gi|347522734|ref|YP_004780304.1| - 0.00042 20.0 11.1 0.004 16.8 1.7 3.2 2 2 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Nudix_N_2 PF14803.6 gi|347522734|ref|YP_004780304.1| - 0.00044 20.1 15.2 0.0027 17.6 3.8 3.5 3 1 0 3 3 3 1 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|347522734|ref|YP_004780304.1| - 0.00091 19.3 13.3 1.6 8.9 0.4 4.1 3 1 0 3 3 3 1 Zinc ribbon domain zf-TFIIB PF13453.6 gi|347522734|ref|YP_004780304.1| - 0.001 18.4 2.1 0.001 18.4 2.1 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|347522734|ref|YP_004780304.1| - 0.0011 18.3 15.3 0.17 11.3 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain zf-ACC PF17848.1 gi|347522734|ref|YP_004780304.1| - 0.0011 19.0 13.4 0.087 12.9 3.0 3.8 3 1 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain UPF0547 PF10571.9 gi|347522734|ref|YP_004780304.1| - 0.0019 18.2 19.1 0.92 9.6 0.4 4.2 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|347522734|ref|YP_004780304.1| - 0.002 18.0 7.8 1.1 9.3 0.2 3.4 2 2 0 2 2 2 2 PhnA Zinc-Ribbon DUF2387 PF09526.10 gi|347522734|ref|YP_004780304.1| - 0.0031 17.6 6.9 0.68 10.1 0.2 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf_UBZ PF18439.1 gi|347522734|ref|YP_004780304.1| - 0.0031 17.1 12.8 1.5 8.5 0.1 4.2 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger Ima1_N PF09779.9 gi|347522734|ref|YP_004780304.1| - 0.0035 18.2 1.0 0.0092 16.8 0.0 1.8 1 1 1 2 2 2 1 Ima1 N-terminal domain zf-NADH-PPase PF09297.11 gi|347522734|ref|YP_004780304.1| - 0.0073 15.9 6.8 0.0073 15.9 6.8 3.8 3 1 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain IBR PF01485.21 gi|347522734|ref|YP_004780304.1| - 0.0089 16.2 9.7 0.096 12.9 1.1 2.6 2 1 0 2 2 2 1 IBR domain, a half RING-finger domain zf-FPG_IleRS PF06827.14 gi|347522734|ref|YP_004780304.1| - 0.022 14.6 4.6 0.022 14.6 4.6 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.6 gi|347522734|ref|YP_004780304.1| - 0.023 14.8 9.8 0.94 9.6 0.7 2.8 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_recom PF13408.6 gi|347522734|ref|YP_004780304.1| - 0.028 14.9 0.2 0.028 14.9 0.2 2.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS91 PF14319.6 gi|347522734|ref|YP_004780304.1| - 0.057 13.5 10.2 3.5 7.7 0.5 3.9 2 2 1 3 3 3 0 Transposase zinc-binding domain DUF35_N PF12172.8 gi|347522734|ref|YP_004780304.1| - 0.067 13.1 14.6 6.3 6.8 0.1 4.2 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_13 PF09855.9 gi|347522734|ref|YP_004780304.1| - 0.079 13.1 7.2 9 6.6 0.0 3.9 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) HypA PF01155.19 gi|347522734|ref|YP_004780304.1| - 0.11 12.6 8.7 0.35 10.9 0.6 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YhfH PF14149.6 gi|347522734|ref|YP_004780304.1| - 0.11 12.5 7.1 12 6.0 0.0 3.9 4 0 0 4 4 4 0 YhfH-like protein AlbA_2 PF04326.14 gi|347522734|ref|YP_004780304.1| - 0.11 12.8 0.0 0.15 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative DNA-binding domain zf-HIT PF04438.16 gi|347522734|ref|YP_004780304.1| - 0.17 11.8 13.7 5.8 6.9 0.1 4.1 4 0 0 4 4 4 0 HIT zinc finger Terminase_GpA PF05876.12 gi|347522734|ref|YP_004780304.1| - 0.23 10.0 6.7 0.31 9.6 0.6 2.1 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) C1_4 PF07975.12 gi|347522734|ref|YP_004780304.1| - 0.26 11.5 8.0 8.3 6.7 0.1 3.3 2 2 1 3 3 3 0 TFIIH C1-like domain Elf1 PF05129.13 gi|347522734|ref|YP_004780304.1| - 0.32 11.1 9.1 0.57 10.3 1.9 3.2 2 2 0 2 2 2 0 Transcription elongation factor Elf1 like zf-RING_11 PF17123.5 gi|347522734|ref|YP_004780304.1| - 0.37 10.6 5.8 16 5.4 0.1 3.4 3 0 0 3 3 3 0 RING-like zinc finger GFA PF04828.14 gi|347522734|ref|YP_004780304.1| - 0.38 11.1 8.7 2.1 8.7 0.3 3.3 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme tRNA-synt_1f PF01921.18 gi|347522734|ref|YP_004780304.1| - 0.4 9.5 2.7 3.3 6.5 0.1 2.0 1 1 1 2 2 2 0 tRNA synthetases class I (K) A2L_zn_ribbon PF08792.10 gi|347522734|ref|YP_004780304.1| - 0.68 9.7 12.0 4.1 7.2 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain NMD3 PF04981.13 gi|347522734|ref|YP_004780304.1| - 0.77 9.2 9.4 2.7 7.4 1.5 2.7 1 1 2 3 3 3 0 NMD3 family Zn_ribbon_17 PF17120.5 gi|347522734|ref|YP_004780304.1| - 0.93 9.2 10.1 5.4 6.7 0.1 3.5 3 1 0 3 3 3 0 Zinc-ribbon, C4HC2 type DUF2197 PF09963.9 gi|347522734|ref|YP_004780304.1| - 0.93 9.8 4.9 13 6.2 0.3 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) DUF4379 PF14311.6 gi|347522734|ref|YP_004780304.1| - 0.97 9.8 13.2 1.8 9.0 1.0 3.6 3 1 0 3 3 3 0 Probable Zinc-ribbon domain Methyltransf_13 PF08421.11 gi|347522734|ref|YP_004780304.1| - 1 9.7 10.1 12 6.3 0.1 3.8 2 2 2 4 4 4 0 Putative zinc binding domain HalOD2 PF18547.1 gi|347522734|ref|YP_004780304.1| - 1.3 9.0 11.5 1.4 8.8 0.3 3.7 3 1 1 4 4 4 0 Halobacterial output domain 2 NRDD PF13597.6 gi|347522734|ref|YP_004780304.1| - 1.3 7.7 4.2 0.7 8.6 0.3 1.9 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase Mu-like_Com PF10122.9 gi|347522734|ref|YP_004780304.1| - 1.6 8.2 17.6 0.49 9.9 0.8 4.0 3 1 1 4 4 4 0 Mu-like prophage protein Com DUF983 PF06170.12 gi|347522734|ref|YP_004780304.1| - 1.8 9.0 0.0 1.8 9.0 0.0 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF983) DNA_RNApol_7kD PF03604.13 gi|347522734|ref|YP_004780304.1| - 1.8 8.3 14.4 16 5.3 0.4 3.8 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin PF00301.20 gi|347522734|ref|YP_004780304.1| - 2.1 8.5 12.3 24 5.0 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin Ribosomal_L32p PF01783.23 gi|347522734|ref|YP_004780304.1| - 2.5 8.4 8.6 6.3 7.1 2.5 3.5 3 1 0 3 3 3 0 Ribosomal L32p protein family RNHCP PF12647.7 gi|347522734|ref|YP_004780304.1| - 2.5 8.1 9.3 17 5.5 4.0 3.1 1 1 2 3 3 3 0 RNHCP domain zinc-ribbons_6 PF07191.12 gi|347522734|ref|YP_004780304.1| - 2.6 8.1 9.9 3 7.9 1.2 2.9 2 2 0 2 2 2 0 zinc-ribbons zf-RRN7 PF11781.8 gi|347522734|ref|YP_004780304.1| - 2.7 7.7 13.6 10 5.9 0.0 4.0 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_9 PF14369.6 gi|347522734|ref|YP_004780304.1| - 2.8 8.3 10.9 16 5.9 4.1 3.6 3 1 0 3 3 3 0 zinc-ribbon eIF-5_eIF-2B PF01873.17 gi|347522734|ref|YP_004780304.1| - 3.6 7.5 5.9 5.9 6.8 0.6 2.4 2 1 0 2 2 2 0 Domain found in IF2B/IF5 CxC4 PF18717.1 gi|347522734|ref|YP_004780304.1| - 3.8 7.4 8.2 1.7 8.5 0.5 2.7 2 1 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases DUF3268 PF11672.8 gi|347522734|ref|YP_004780304.1| - 4.3 7.7 8.5 1.4 9.3 0.8 2.5 2 2 0 2 2 2 0 zinc-finger-containing domain Baculo_LEF5_C PF11792.8 gi|347522734|ref|YP_004780304.1| - 4.5 7.0 7.9 0.85 9.3 0.3 2.9 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-tcix PF14952.6 gi|347522734|ref|YP_004780304.1| - 5 6.8 19.1 4.7 6.9 0.8 3.9 3 1 1 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding Auto_anti-p27 PF06677.12 gi|347522734|ref|YP_004780304.1| - 5.1 7.3 13.3 0.3 11.3 3.2 2.8 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin_2 PF18073.1 gi|347522734|ref|YP_004780304.1| - 5.5 6.8 18.0 5.1 6.9 0.3 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain DNA_ligase_ZBD PF03119.16 gi|347522734|ref|YP_004780304.1| - 6.8 6.8 12.5 0.28 11.2 1.5 3.4 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.6 gi|347522734|ref|YP_004780304.1| - 6.8 6.7 11.6 2.1 8.3 3.4 3.4 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 Zn_ribbon_SprT PF17283.2 gi|347522734|ref|YP_004780304.1| - 7.2 6.6 19.5 0.47 10.4 3.7 3.5 2 2 0 2 2 2 0 SprT-like zinc ribbon domain zf-IS66 PF13005.7 gi|347522734|ref|YP_004780304.1| - 7.3 7.1 20.6 2.9 8.4 0.2 4.5 2 2 3 5 5 5 0 zinc-finger binding domain of transposase IS66 Opy2 PF09463.10 gi|347522734|ref|YP_004780304.1| - 7.7 6.9 9.2 5.7 7.3 0.0 3.6 4 0 0 4 4 4 0 Opy2 protein PHD PF00628.29 gi|347522734|ref|YP_004780304.1| - 8.3 6.4 11.7 14 5.7 2.6 3.0 2 2 0 2 2 2 0 PHD-finger zf-C4_Topoisom PF01396.19 gi|347522734|ref|YP_004780304.1| - 8.8 6.2 14.4 4.6 7.1 0.1 3.9 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger PCNA_N PF00705.18 gi|347522736|ref|YP_004780306.1| - 1.2e-16 60.5 0.0 2.1e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|347522736|ref|YP_004780306.1| - 1.7e-06 28.2 0.0 2.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|347522736|ref|YP_004780306.1| - 1.9e-06 27.1 0.1 4.7e-05 22.6 0.1 2.0 1 1 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|347522736|ref|YP_004780306.1| - 0.042 13.3 0.0 0.075 12.5 0.0 1.5 1 1 0 1 1 1 0 Rad9 DUF4901 PF16244.5 gi|347522736|ref|YP_004780306.1| - 0.064 12.6 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4901) DNA_primase_S PF01896.19 gi|347522737|ref|YP_004780307.1| - 9.4e-15 55.1 0.3 1.8e-13 50.9 0.1 2.8 2 1 0 2 2 2 1 DNA primase small subunit Ribosomal_L44 PF00935.19 gi|347522739|ref|YP_004780309.1| - 7.7e-28 96.8 10.2 9.9e-28 96.4 10.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_2 PF13240.6 gi|347522739|ref|YP_004780309.1| - 0.0043 16.7 3.6 0.42 10.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|347522739|ref|YP_004780309.1| - 0.015 15.2 3.2 0.22 11.4 0.4 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS NOB1_Zn_bind PF08772.11 gi|347522739|ref|YP_004780309.1| - 0.028 14.6 2.0 0.67 10.2 0.2 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like RNA_POL_M_15KD PF02150.16 gi|347522739|ref|YP_004780309.1| - 0.06 13.2 1.2 2.4 8.1 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_L33 PF00471.20 gi|347522739|ref|YP_004780309.1| - 0.22 12.0 0.4 0.22 12.0 0.4 2.9 2 1 0 2 2 2 0 Ribosomal protein L33 UPF0547 PF10571.9 gi|347522739|ref|YP_004780309.1| - 0.23 11.6 2.8 2.6 8.2 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|347522739|ref|YP_004780309.1| - 0.32 11.0 3.5 0.19 11.6 0.3 2.1 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|347522739|ref|YP_004780309.1| - 0.33 10.9 4.1 1.2 9.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|347522739|ref|YP_004780309.1| - 0.35 10.9 3.7 1 9.5 3.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|347522739|ref|YP_004780309.1| - 0.52 10.4 2.6 3 8.0 2.7 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HscB_4_cys PF18256.1 gi|347522739|ref|YP_004780309.1| - 1.6 8.6 5.2 1.2 9.0 1.4 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Ribosomal_S27e PF01667.17 gi|347522740|ref|YP_004780310.1| - 3.3e-22 78.0 0.8 3.7e-22 77.8 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|347522740|ref|YP_004780310.1| - 2.2e-05 23.9 0.8 2.9e-05 23.5 0.8 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|347522740|ref|YP_004780310.1| - 0.00071 18.9 1.0 0.017 14.5 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF35_N PF12172.8 gi|347522740|ref|YP_004780310.1| - 0.00093 19.0 1.9 0.1 12.5 0.1 2.3 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|347522740|ref|YP_004780310.1| - 0.0068 16.3 1.3 0.16 11.9 0.0 2.4 2 1 0 2 2 2 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|347522740|ref|YP_004780310.1| - 0.011 15.4 0.6 0.19 11.4 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|347522740|ref|YP_004780310.1| - 0.013 15.6 0.4 0.022 14.9 0.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347522740|ref|YP_004780310.1| - 0.017 14.9 4.0 0.12 12.2 0.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|347522740|ref|YP_004780310.1| - 0.019 15.0 3.4 0.85 9.7 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3797 PF12677.7 gi|347522740|ref|YP_004780310.1| - 0.019 14.9 0.4 0.25 11.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DZR PF12773.7 gi|347522740|ref|YP_004780310.1| - 0.02 14.9 0.8 0.048 13.7 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|347522740|ref|YP_004780310.1| - 0.024 14.5 0.7 3.5 7.6 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|347522740|ref|YP_004780310.1| - 0.029 14.4 0.0 0.032 14.2 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|347522740|ref|YP_004780310.1| - 0.059 13.8 0.4 0.069 13.5 0.4 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Auto_anti-p27 PF06677.12 gi|347522740|ref|YP_004780310.1| - 0.068 13.3 0.5 3 8.1 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|347522740|ref|YP_004780310.1| - 0.087 12.8 1.1 0.12 12.3 1.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|347522740|ref|YP_004780310.1| - 0.09 12.7 2.7 0.77 9.7 2.7 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Methyltransf_13 PF08421.11 gi|347522740|ref|YP_004780310.1| - 0.12 12.7 1.6 0.61 10.4 0.1 2.0 1 1 1 2 2 2 0 Putative zinc binding domain DUF1610 PF07754.11 gi|347522740|ref|YP_004780310.1| - 0.13 12.2 2.5 0.54 10.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PADR1 PF08063.12 gi|347522740|ref|YP_004780310.1| - 0.15 11.9 1.0 0.35 10.7 1.1 1.6 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-NADH-PPase PF09297.11 gi|347522740|ref|YP_004780310.1| - 0.2 11.4 4.9 0.46 10.2 1.5 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain EIF_2_alpha PF07541.12 gi|347522741|ref|YP_004780311.1| - 2.2e-24 85.8 0.0 5.2e-24 84.6 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|347522741|ref|YP_004780311.1| - 9.1e-15 54.8 2.1 5.3e-14 52.3 0.6 2.3 2 0 0 2 2 2 1 S1 RNA binding domain Nop10p PF04135.12 gi|347522742|ref|YP_004780312.1| - 5.2e-24 84.0 1.7 6.6e-24 83.7 1.7 1.2 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Desulfoferrod_N PF06397.12 gi|347522742|ref|YP_004780312.1| - 0.0091 15.6 2.3 0.3 10.7 0.0 2.2 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain RecR PF02132.15 gi|347522742|ref|YP_004780312.1| - 0.059 12.9 0.4 0.086 12.4 0.4 1.2 1 0 0 1 1 1 0 RecR protein zf-FPG_IleRS PF06827.14 gi|347522742|ref|YP_004780312.1| - 0.065 13.1 3.2 4.3 7.3 0.3 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Prok-RING_2 PF14445.6 gi|347522742|ref|YP_004780312.1| - 0.15 12.2 3.0 0.41 10.9 2.2 2.1 2 1 0 2 2 2 0 Prokaryotic RING finger family 2 TF_Zn_Ribbon PF08271.12 gi|347522742|ref|YP_004780312.1| - 0.25 10.9 3.3 6.5 6.3 0.7 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding CarS-like PF01864.17 gi|347522743|ref|YP_004780313.1| - 8.1e-36 123.6 6.4 2.4e-35 122.1 6.4 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|347522743|ref|YP_004780313.1| - 3.1e-05 23.9 0.6 3.1e-05 23.9 0.6 2.1 1 1 0 2 2 2 1 Cytidylyltransferase family DUF3084 PF11283.8 gi|347522743|ref|YP_004780313.1| - 3.2 7.8 7.7 9.6 6.3 0.9 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3084) Rad51 PF08423.11 gi|347522744|ref|YP_004780314.1| - 0.00058 19.2 0.0 0.0082 15.4 0.0 2.1 2 0 0 2 2 2 1 Rad51 AAA_16 PF13191.6 gi|347522744|ref|YP_004780314.1| - 0.0089 16.4 0.0 0.014 15.8 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|347522744|ref|YP_004780314.1| - 0.0098 15.3 0.0 1.2 8.4 0.0 2.2 2 0 0 2 2 2 2 KaiC ResIII PF04851.15 gi|347522744|ref|YP_004780314.1| - 0.032 14.2 0.0 0.074 13.0 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|347522744|ref|YP_004780314.1| - 0.053 13.0 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein ATPase_2 PF01637.18 gi|347522744|ref|YP_004780314.1| - 0.099 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DnaB_C PF03796.15 gi|347522744|ref|YP_004780314.1| - 0.18 11.1 0.0 6.9 5.9 0.0 2.1 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain CLP1_P PF16575.5 gi|347522745|ref|YP_004780315.1| - 3.4e-39 134.6 0.0 5.1e-39 134.0 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|347522745|ref|YP_004780315.1| - 0.035 14.2 0.0 0.081 13.0 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|347522745|ref|YP_004780315.1| - 0.04 13.4 0.4 0.076 12.5 0.4 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase PhoH PF02562.16 gi|347522745|ref|YP_004780315.1| - 0.13 11.7 0.1 14 5.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein UbiD PF01977.16 gi|347522746|ref|YP_004780316.1| - 8.8e-51 173.0 0.0 1.1e-50 172.8 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF521 PF04412.13 gi|347522747|ref|YP_004780317.1| - 2.7e-118 395.2 0.0 3.1e-118 395.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|347522748|ref|YP_004780318.1| - 2.5e-15 56.0 0.1 5.3e-15 55.0 0.1 1.5 1 1 0 1 1 1 1 Aconitase X swivel domain UPF0147 PF03685.13 gi|347522749|ref|YP_004780319.1| - 3.7e-35 119.8 2.4 4.2e-35 119.6 2.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_2 PF13646.6 gi|347522749|ref|YP_004780319.1| - 0.014 15.8 0.1 0.038 14.4 0.0 1.7 1 1 0 1 1 1 0 HEAT repeats Lipase_chap PF03280.14 gi|347522749|ref|YP_004780319.1| - 0.08 12.9 0.0 0.087 12.8 0.0 1.1 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein Ribosomal_S5_C PF03719.15 gi|347522749|ref|YP_004780319.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S5, C-terminal domain DUF402 PF04167.13 gi|347522750|ref|YP_004780320.1| - 5.5e-17 61.7 0.0 1e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|347522750|ref|YP_004780320.1| - 4.1e-07 29.7 0.3 6.5e-07 29.0 0.3 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family CTP-dep_RFKase PF01982.16 gi|347522751|ref|YP_004780321.1| - 3e-20 72.5 0.0 3.7e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 VitK2_biosynth PF02621.14 gi|347522752|ref|YP_004780322.1| - 5e-10 39.3 0.0 7e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis Radical_SAM PF04055.21 gi|347522753|ref|YP_004780323.1| - 5.7e-14 52.8 0.1 9.1e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347522753|ref|YP_004780323.1| - 0.0031 17.8 0.0 0.0051 17.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347522753|ref|YP_004780323.1| - 0.015 15.4 0.0 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|347522754|ref|YP_004780324.1| - 1.6e-14 54.7 0.0 2.8e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Med27 PF11571.8 gi|347522754|ref|YP_004780324.1| - 0.16 12.4 0.0 0.37 11.2 0.0 1.7 1 0 0 1 1 1 0 Mediator complex subunit 27 CBS PF00571.28 gi|347522755|ref|YP_004780325.1| - 4.2e-62 206.5 35.5 8e-12 45.4 0.6 8.3 8 0 0 8 8 8 7 CBS domain Acetyltransf_10 PF13673.7 gi|347522755|ref|YP_004780325.1| - 0.0008 19.4 0.0 3 7.8 0.0 3.8 3 0 0 3 3 3 2 Acetyltransferase (GNAT) domain DUF3659 PF12396.8 gi|347522755|ref|YP_004780325.1| - 0.003 17.4 7.5 4.3 7.3 0.1 4.4 4 0 0 4 4 4 1 Protein of unknown function (DUF3659) Acetyltransf_1 PF00583.25 gi|347522755|ref|YP_004780325.1| - 0.011 16.0 1.4 13 6.0 0.1 5.4 4 3 1 5 5 5 0 Acetyltransferase (GNAT) family IF3_N PF05198.16 gi|347522755|ref|YP_004780325.1| - 0.015 15.6 2.6 61 4.0 0.0 4.7 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain Robl_LC7 PF03259.17 gi|347522755|ref|YP_004780325.1| - 0.035 13.9 0.2 0.54 10.1 0.0 2.7 2 0 0 2 2 2 0 Roadblock/LC7 domain sCache_3_2 PF17203.4 gi|347522755|ref|YP_004780325.1| - 9 6.4 7.2 27 4.9 0.2 3.7 4 0 0 4 4 4 0 Single cache domain 3 RNA_POL_M_15KD PF02150.16 gi|347522756|ref|YP_004780326.1| - 1.6e-06 27.8 0.7 2.6e-06 27.2 0.7 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.6 gi|347522756|ref|YP_004780326.1| - 0.00064 19.0 0.2 0.29 10.5 0.1 2.5 2 0 0 2 2 2 2 Transcription factor zinc-finger zf-NADH-PPase PF09297.11 gi|347522756|ref|YP_004780326.1| - 0.00079 19.0 4.6 0.02 14.6 4.9 2.3 1 1 1 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347522756|ref|YP_004780326.1| - 0.0044 16.7 4.7 0.94 9.3 1.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|347522756|ref|YP_004780326.1| - 0.007 16.0 2.3 0.17 11.7 0.1 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|347522756|ref|YP_004780326.1| - 0.0099 15.8 1.4 0.17 11.8 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zf-IS66 PF13005.7 gi|347522756|ref|YP_004780326.1| - 0.015 15.7 3.7 2.6 8.5 0.2 2.6 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 IBR PF01485.21 gi|347522756|ref|YP_004780326.1| - 0.017 15.3 0.5 0.028 14.6 0.5 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DZR PF12773.7 gi|347522756|ref|YP_004780326.1| - 0.022 14.8 0.3 0.037 14.1 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|347522756|ref|YP_004780326.1| - 0.023 14.3 0.3 4.2 7.1 0.0 2.7 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|347522756|ref|YP_004780326.1| - 0.026 13.9 2.1 0.69 9.4 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|347522756|ref|YP_004780326.1| - 0.029 14.3 1.1 0.7 9.8 1.1 2.1 1 1 0 1 1 1 0 Halobacterial output domain 2 OrfB_Zn_ribbon PF07282.11 gi|347522756|ref|YP_004780326.1| - 0.037 13.9 0.2 0.068 13.1 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|347522756|ref|YP_004780326.1| - 0.061 13.5 0.8 8.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|347522756|ref|YP_004780326.1| - 0.065 13.2 0.4 0.13 12.3 0.4 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|347522756|ref|YP_004780326.1| - 0.068 13.3 4.1 0.081 13.1 0.6 2.2 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.6 gi|347522756|ref|YP_004780326.1| - 0.094 13.1 0.2 0.17 12.3 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_ribbon_recom PF13408.6 gi|347522756|ref|YP_004780326.1| - 0.11 13.1 5.0 1.3 9.6 0.3 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF951 PF06107.11 gi|347522756|ref|YP_004780326.1| - 0.11 12.4 1.2 0.35 10.8 1.0 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF951) NOB1_Zn_bind PF08772.11 gi|347522756|ref|YP_004780326.1| - 0.14 12.4 0.6 3.6 7.8 0.2 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C4_Topoisom PF01396.19 gi|347522756|ref|YP_004780326.1| - 0.15 11.8 2.1 3.9 7.3 0.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TFIIS_C PF01096.18 gi|347522756|ref|YP_004780326.1| - 0.16 11.9 1.5 5.6 6.9 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|347522756|ref|YP_004780326.1| - 0.32 11.1 4.4 4.9 7.3 1.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ACC PF17848.1 gi|347522756|ref|YP_004780326.1| - 0.45 10.6 3.1 19 5.4 0.1 2.6 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|347522756|ref|YP_004780326.1| - 0.66 9.9 6.9 7.2 6.6 5.5 2.6 2 1 1 3 3 2 0 Nudix N-terminal Endonuclease_5 PF04493.14 gi|347522757|ref|YP_004780327.1| - 1.4e-54 184.8 0.3 1.8e-54 184.4 0.3 1.1 1 0 0 1 1 1 1 Endonuclease V Proteasome PF00227.26 gi|347522758|ref|YP_004780328.1| - 7.3e-56 188.7 2.2 8.9e-56 188.4 2.2 1.0 1 0 0 1 1 1 1 Proteasome subunit TF_Zn_Ribbon PF08271.12 gi|347522759|ref|YP_004780329.1| - 2.9e-11 42.7 2.6 5.1e-11 41.9 2.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|347522759|ref|YP_004780329.1| - 2.7e-05 23.8 1.1 4.6e-05 23.0 1.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|347522759|ref|YP_004780329.1| - 0.0033 17.8 0.2 0.0051 17.2 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|347522759|ref|YP_004780329.1| - 0.013 15.2 0.9 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347522759|ref|YP_004780329.1| - 0.017 15.1 0.2 0.033 14.1 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|347522759|ref|YP_004780329.1| - 0.022 14.1 3.2 0.16 11.4 3.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|347522759|ref|YP_004780329.1| - 0.033 13.9 0.1 0.06 13.1 0.1 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 GntR PF00392.21 gi|347522759|ref|YP_004780329.1| - 0.05 13.2 0.0 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sda PF08970.10 gi|347522759|ref|YP_004780329.1| - 0.06 13.1 1.4 3 7.6 0.3 2.6 2 0 0 2 2 2 0 Sporulation inhibitor A Elf1 PF05129.13 gi|347522759|ref|YP_004780329.1| - 0.061 13.4 0.6 0.18 11.8 0.6 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Desulfoferrod_N PF06397.12 gi|347522759|ref|YP_004780329.1| - 0.064 12.9 1.6 0.13 11.9 1.6 1.5 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain YhfH PF14149.6 gi|347522759|ref|YP_004780329.1| - 0.071 13.1 0.6 11 6.1 0.0 2.3 2 0 0 2 2 2 0 YhfH-like protein PhnA_Zn_Ribbon PF08274.12 gi|347522759|ref|YP_004780329.1| - 0.081 12.9 0.5 0.16 12.0 0.5 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon HTH_36 PF13730.6 gi|347522759|ref|YP_004780329.1| - 0.17 11.8 1.0 6.2 6.9 0.0 2.5 3 0 0 3 3 2 0 Helix-turn-helix domain DZR PF12773.7 gi|347522759|ref|YP_004780329.1| - 0.2 11.7 0.4 0.32 11.1 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|347522759|ref|YP_004780329.1| - 0.23 11.6 2.5 8.9 6.5 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 cIII PF08134.11 gi|347522759|ref|YP_004780329.1| - 0.4 10.5 4.5 1 9.2 0.2 2.4 2 0 0 2 2 2 0 cIII protein family Prim_Zn_Ribbon PF08273.12 gi|347522759|ref|YP_004780329.1| - 3.4 8.0 5.7 11 6.4 3.7 2.4 2 1 0 2 2 1 0 Zinc-binding domain of primase-helicase MMR_HSR1 PF01926.23 gi|347522760|ref|YP_004780330.1| - 7.4e-20 71.1 0.0 1.4e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|347522760|ref|YP_004780330.1| - 1.2e-16 60.2 1.0 2.5e-16 59.2 1.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) NOG1_N PF17835.1 gi|347522760|ref|YP_004780330.1| - 5.8e-12 45.9 1.3 1e-11 45.0 1.3 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain FeoB_N PF02421.18 gi|347522760|ref|YP_004780330.1| - 8.2e-12 44.9 0.1 1.5e-11 44.1 0.1 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|347522760|ref|YP_004780330.1| - 2.3e-06 27.6 1.1 0.0098 15.8 0.1 3.2 2 1 0 2 2 2 2 RsgA GTPase Arf PF00025.21 gi|347522760|ref|YP_004780330.1| - 1.3e-05 24.7 0.9 0.00021 20.8 0.1 2.8 1 1 1 2 2 2 1 ADP-ribosylation factor family Ras PF00071.22 gi|347522760|ref|YP_004780330.1| - 3.7e-05 23.4 0.0 7.6e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.27 gi|347522760|ref|YP_004780330.1| - 0.00011 21.8 0.4 0.0064 16.1 0.5 2.7 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|347522760|ref|YP_004780330.1| - 0.00062 19.4 0.2 0.88 9.1 0.3 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|347522760|ref|YP_004780330.1| - 0.0016 18.2 0.1 0.006 16.3 0.1 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|347522760|ref|YP_004780330.1| - 0.0067 17.0 0.0 0.095 13.2 0.0 2.4 2 2 0 2 2 2 1 AAA domain Dynamin_N PF00350.23 gi|347522760|ref|YP_004780330.1| - 0.007 16.4 1.1 1.8 8.6 0.1 2.4 1 1 1 2 2 2 2 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|347522760|ref|YP_004780330.1| - 0.013 15.5 0.4 0.034 14.2 0.1 1.8 2 0 0 2 2 1 0 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|347522760|ref|YP_004780330.1| - 0.018 14.0 0.7 0.99 8.3 0.0 2.4 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|347522760|ref|YP_004780330.1| - 0.029 14.5 0.1 0.16 12.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain AIG1 PF04548.16 gi|347522760|ref|YP_004780330.1| - 0.035 13.4 0.1 0.064 12.6 0.1 1.5 1 0 0 1 1 1 0 AIG1 family AAA_28 PF13521.6 gi|347522760|ref|YP_004780330.1| - 0.041 14.1 3.3 0.21 11.8 0.0 2.7 2 2 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|347522760|ref|YP_004780330.1| - 0.048 13.4 0.1 5.6 6.7 0.0 2.4 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|347522760|ref|YP_004780330.1| - 0.071 13.5 0.0 0.21 11.9 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain RTC PF01137.21 gi|347522761|ref|YP_004780331.1| - 2.4e-81 272.2 0.0 2.8e-81 272.0 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|347522761|ref|YP_004780331.1| - 3.8e-26 91.6 0.0 1.6e-25 89.6 0.0 2.0 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_like PF01467.26 gi|347522762|ref|YP_004780332.1| - 2.6e-16 60.1 0.0 1.7e-14 54.3 0.0 2.1 1 1 0 1 1 1 1 Cytidylyltransferase-like SAM_adeno_trans PF01887.16 gi|347522763|ref|YP_004780333.1| - 5.5e-72 242.0 0.0 6.2e-72 241.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Methyltr_RsmB-F PF01189.17 gi|347522764|ref|YP_004780334.1| - 3.8e-45 154.0 0.0 5.6e-45 153.4 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|347522764|ref|YP_004780334.1| - 9.3e-11 41.7 0.0 1.6e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|347522764|ref|YP_004780334.1| - 3.1e-07 30.8 0.0 9.1e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|347522764|ref|YP_004780334.1| - 1.8e-05 24.9 0.0 3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|347522764|ref|YP_004780334.1| - 4.2e-05 24.2 0.0 0.00013 22.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|347522764|ref|YP_004780334.1| - 0.00012 21.9 0.0 0.00022 21.1 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|347522764|ref|YP_004780334.1| - 0.00061 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|347522764|ref|YP_004780334.1| - 0.0035 17.0 0.0 0.009 15.7 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|347522764|ref|YP_004780334.1| - 0.0037 16.6 0.0 0.0075 15.6 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DUF43 PF01861.16 gi|347522764|ref|YP_004780334.1| - 0.005 16.1 0.0 0.0093 15.2 0.0 1.3 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain TRM PF02005.16 gi|347522764|ref|YP_004780334.1| - 0.0074 15.5 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.18 gi|347522764|ref|YP_004780334.1| - 0.036 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF348 PF03990.14 gi|347522764|ref|YP_004780334.1| - 0.052 13.3 0.0 4.5 7.1 0.0 2.5 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain LPD22 PF18834.1 gi|347522764|ref|YP_004780334.1| - 0.17 12.1 0.0 5.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 Methyltransf_11 PF08241.12 gi|347522764|ref|YP_004780334.1| - 0.17 12.6 0.0 0.45 11.2 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain UPF0113 PF03657.13 gi|347522765|ref|YP_004780335.1| - 7.5e-19 67.8 0.0 1.1e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain FKBP_C PF00254.28 gi|347522766|ref|YP_004780336.1| - 1.9e-13 50.6 0.1 1.1e-12 48.1 0.1 2.1 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|347522766|ref|YP_004780336.1| - 3e-05 24.0 0.5 7.3e-05 22.8 0.2 1.9 2 0 0 2 2 2 1 FKBP26_C-terminal AAA_14 PF13173.6 gi|347522766|ref|YP_004780336.1| - 0.0079 16.2 0.2 0.5 10.4 0.0 2.6 3 0 0 3 3 3 1 AAA domain FeS_assembly_P PF01883.19 gi|347522766|ref|YP_004780336.1| - 0.0094 16.1 1.4 0.072 13.3 0.0 2.6 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein Fe-ADH_2 PF13685.6 gi|347522767|ref|YP_004780337.1| - 1.4e-69 234.6 1.2 1.7e-69 234.3 1.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|347522767|ref|YP_004780337.1| - 1.4e-27 96.5 3.1 1.3e-26 93.3 3.1 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|347522767|ref|YP_004780337.1| - 3.4e-12 46.1 0.1 3.5e-11 42.8 0.1 2.4 1 1 0 1 1 1 1 3-dehydroquinate synthase Proteasome PF00227.26 gi|347522768|ref|YP_004780338.1| - 3.3e-59 199.6 2.2 3.8e-59 199.4 2.2 1.0 1 0 0 1 1 1 1 Proteasome subunit SO_alpha_A3 PF17806.1 gi|347522768|ref|YP_004780338.1| - 0.097 13.0 0.6 0.19 12.0 0.1 1.8 2 0 0 2 2 2 0 Sarcosine oxidase A3 domain Beta-Casp PF10996.8 gi|347522769|ref|YP_004780339.1| - 1.2e-24 86.8 0.0 2.9e-24 85.5 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|347522769|ref|YP_004780339.1| - 5e-20 71.2 7.0 1.5e-19 69.7 0.4 3.3 4 0 0 4 4 4 1 KH domain RMMBL PF07521.12 gi|347522769|ref|YP_004780339.1| - 1.1e-15 57.3 0.0 3.9e-15 55.5 0.0 2.0 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|347522769|ref|YP_004780339.1| - 1.4e-14 54.0 0.0 3.3e-14 52.8 0.0 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347522769|ref|YP_004780339.1| - 3e-12 47.0 2.1 1.5e-11 44.6 2.2 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|347522769|ref|YP_004780339.1| - 8.7e-11 41.7 0.1 6e-10 39.0 0.1 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|347522769|ref|YP_004780339.1| - 0.001 19.0 0.0 0.0031 17.4 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain PUA PF01472.20 gi|347522770|ref|YP_004780340.1| - 8.4e-19 67.3 0.1 1.1e-18 66.9 0.1 1.2 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|347522770|ref|YP_004780340.1| - 4.6e-11 42.9 0.5 7e-11 42.3 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|347522770|ref|YP_004780340.1| - 0.0045 17.7 0.1 0.017 15.8 0.1 1.8 1 1 0 1 1 1 1 Pre-PUA-like domain LSM PF01423.22 gi|347522771|ref|YP_004780341.1| - 1.2e-23 82.5 0.6 1.4e-23 82.4 0.6 1.0 1 0 0 1 1 1 1 LSM domain Terminase_3 PF04466.13 gi|347522771|ref|YP_004780341.1| - 0.17 11.4 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit Ribosomal_L37e PF01907.19 gi|347522772|ref|YP_004780342.1| - 4.8e-24 84.3 9.8 5.4e-24 84.1 9.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e RNA_pol_Rpb5_C PF01191.19 gi|347522773|ref|YP_004780343.1| - 1.9e-30 104.5 0.0 2.4e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DNA_binding_1 PF01035.20 gi|347522773|ref|YP_004780343.1| - 0.062 13.4 0.5 0.5 10.5 0.1 2.2 1 1 1 2 2 2 0 6-O-methylguanine DNA methyltransferase, DNA binding domain RNA_pol_Rpb2_6 PF00562.28 gi|347522774|ref|YP_004780344.1| - 8.6e-129 430.0 0.0 1.2e-128 429.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|347522774|ref|YP_004780344.1| - 6e-41 140.2 0.0 9.1e-41 139.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|347522774|ref|YP_004780344.1| - 3.4e-33 114.9 0.1 1.3e-32 113.0 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|347522774|ref|YP_004780344.1| - 3.9e-31 107.3 0.1 8.7e-31 106.2 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|347522774|ref|YP_004780344.1| - 1.1e-29 102.4 0.0 6.8e-29 99.9 0.0 2.3 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|347522774|ref|YP_004780344.1| - 1.9e-22 79.3 0.3 6.7e-22 77.6 0.3 2.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|347522774|ref|YP_004780344.1| - 2.2e-10 41.0 0.0 6.9e-10 39.3 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RecG_N PF17190.4 gi|347522774|ref|YP_004780344.1| - 0.066 13.9 1.1 0.24 12.1 0.4 2.3 2 0 0 2 2 2 0 RecG N-terminal helical domain RNA_pol_Rpb1_1 PF04997.12 gi|347522775|ref|YP_004780345.1| - 4.5e-93 312.0 0.0 7.3e-93 311.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|347522775|ref|YP_004780345.1| - 1.9e-75 252.7 0.0 3e-75 252.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|347522775|ref|YP_004780345.1| - 7.1e-36 123.5 0.0 1.1e-35 122.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|347522775|ref|YP_004780345.1| - 1.9e-29 101.8 0.0 4.2e-29 100.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|347522775|ref|YP_004780345.1| - 5.4e-26 91.6 0.0 9.2e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Metal_resist PF13801.6 gi|347522775|ref|YP_004780345.1| - 0.068 13.4 0.4 0.32 11.2 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal resistance RNA_pol_Rpb1_5 PF04998.17 gi|347522776|ref|YP_004780346.1| - 4.6e-58 196.8 0.4 7.5e-58 196.1 0.4 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF150 PF02576.17 gi|347522776|ref|YP_004780346.1| - 0.018 15.4 0.1 13 6.3 0.1 3.0 1 1 1 2 2 2 0 RimP N-terminal domain NB-ARC PF00931.22 gi|347522776|ref|YP_004780346.1| - 0.027 13.7 0.1 0.077 12.2 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Ribosomal_L7Ae PF01248.26 gi|347522777|ref|YP_004780347.1| - 6.6e-20 70.7 0.0 7.6e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Ribosomal_L30 PF00327.20 gi|347522777|ref|YP_004780347.1| - 0.028 14.3 0.1 0.047 13.6 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L30p/L7e KH_2 PF07650.17 gi|347522778|ref|YP_004780348.1| - 3.5e-14 52.4 1.7 5.9e-11 42.0 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|347522778|ref|YP_004780348.1| - 4.2e-13 49.0 0.7 2e-05 24.4 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|347522778|ref|YP_004780348.1| - 6e-13 48.7 1.2 1.4e-10 41.0 0.3 2.2 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|347522778|ref|YP_004780348.1| - 7.3e-07 28.9 1.8 0.0001 22.0 0.3 2.4 2 0 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.25 gi|347522779|ref|YP_004780349.1| - 4.6e-47 158.4 0.2 7.4e-47 157.7 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.14 gi|347522781|ref|YP_004780351.1| - 3.4e-06 26.7 0.0 5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosomal_S7 PF00177.21 gi|347522782|ref|YP_004780352.1| - 2.4e-44 150.6 0.2 2.9e-44 150.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|347522783|ref|YP_004780353.1| - 3.7e-56 189.8 0.0 5.6e-56 189.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|347522783|ref|YP_004780353.1| - 5.5e-37 126.5 0.1 2.3e-36 124.5 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|347522783|ref|YP_004780353.1| - 3.6e-17 62.5 2.3 8.1e-17 61.4 2.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|347522783|ref|YP_004780353.1| - 1.4e-05 25.1 0.0 8.9e-05 22.5 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|347522783|ref|YP_004780353.1| - 0.00031 20.6 1.2 0.00094 19.0 1.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 RsgA_GTPase PF03193.16 gi|347522783|ref|YP_004780353.1| - 0.003 17.5 0.1 0.25 11.2 0.0 2.4 1 1 1 2 2 2 1 RsgA GTPase Septin PF00735.18 gi|347522783|ref|YP_004780353.1| - 0.0083 15.4 0.0 0.032 13.5 0.0 1.9 1 1 0 1 1 1 1 Septin Dynamin_N PF00350.23 gi|347522783|ref|YP_004780353.1| - 0.015 15.4 0.1 5.6 7.0 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Amelogenin PF02948.15 gi|347522783|ref|YP_004780353.1| - 0.017 15.8 1.8 0.021 15.5 0.3 1.7 2 0 0 2 2 2 0 Amelogenin SRPRB PF09439.10 gi|347522783|ref|YP_004780353.1| - 0.066 12.6 0.0 1.4 8.3 0.0 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|347522783|ref|YP_004780353.1| - 0.16 11.5 0.1 1.8 8.1 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B TetR_C_2 PF08361.11 gi|347522783|ref|YP_004780353.1| - 0.19 11.9 0.0 0.35 11.0 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region RHH_1 PF01402.21 gi|347522783|ref|YP_004780353.1| - 0.33 11.0 1.4 0.7 9.9 0.2 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Ribosomal_S10 PF00338.22 gi|347522784|ref|YP_004780354.1| - 1.9e-26 92.1 0.1 2.2e-26 92.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|347522784|ref|YP_004780354.1| - 0.016 16.0 0.1 0.04 14.7 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain Ribosomal_L11 PF00298.19 gi|347522784|ref|YP_004780354.1| - 0.14 12.7 0.1 0.25 11.9 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain AhpC-TSA PF00578.21 gi|347522785|ref|YP_004780355.1| - 1.7e-32 111.9 0.0 2.4e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|347522785|ref|YP_004780355.1| - 8.1e-14 51.6 0.0 1.1e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|347522785|ref|YP_004780355.1| - 2.5e-12 46.4 0.0 5.5e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|347522785|ref|YP_004780355.1| - 0.067 13.3 0.0 0.2 11.8 0.0 1.8 2 1 0 2 2 2 0 AhpC/TSA antioxidant enzyme RIO1 PF01163.22 gi|347522786|ref|YP_004780356.1| - 0.0034 17.0 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|347522786|ref|YP_004780356.1| - 0.033 13.6 0.0 0.11 11.9 0.0 1.8 1 1 0 1 1 1 0 Protein kinase domain Pkinase_Tyr PF07714.17 gi|347522786|ref|YP_004780356.1| - 0.074 12.3 0.0 0.098 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein tyrosine kinase DUF1464 PF07318.12 gi|347522787|ref|YP_004780357.1| - 7.6e-100 334.2 0.0 8.6e-100 334.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Glyco_transf_4 PF13439.6 gi|347522788|ref|YP_004780358.1| - 0.034 14.1 4.3 0.053 13.5 2.1 2.3 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|347522788|ref|YP_004780358.1| - 0.06 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|347522788|ref|YP_004780358.1| - 0.16 11.5 0.0 0.57 9.7 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 TrmB PF01978.19 gi|347522788|ref|YP_004780358.1| - 0.27 11.2 1.7 1.3 8.9 0.1 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Glyco_trans_4_4 PF13579.6 gi|347522788|ref|YP_004780358.1| - 1.5 9.3 9.5 5.1 7.5 9.5 2.2 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Pribosyltran PF00156.27 gi|347522789|ref|YP_004780359.1| - 3.3e-17 62.5 0.4 4.7e-17 62.0 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|347522789|ref|YP_004780359.1| - 0.015 14.8 0.0 0.05 13.1 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase DUF4031 PF13223.6 gi|347522789|ref|YP_004780359.1| - 0.065 13.5 0.0 11 6.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4031) DUF1297 PF06973.12 gi|347522791|ref|YP_004780361.1| - 2e-65 219.9 0.0 2.6e-65 219.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|347522791|ref|YP_004780361.1| - 6.3e-39 132.7 0.0 8.8e-39 132.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) HTH_AsnC-type PF13404.6 gi|347522792|ref|YP_004780362.1| - 4.8e-15 55.1 1.1 8.5e-15 54.3 1.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|347522792|ref|YP_004780362.1| - 9.2e-14 51.2 0.0 1.7e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|347522792|ref|YP_004780362.1| - 3.2e-13 49.0 0.6 3.2e-13 49.0 0.6 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|347522792|ref|YP_004780362.1| - 2.2e-08 33.9 0.2 3.9e-08 33.1 0.2 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|347522792|ref|YP_004780362.1| - 6.6e-07 29.2 0.3 2.7e-06 27.2 0.1 2.1 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.6 gi|347522792|ref|YP_004780362.1| - 2.9e-06 27.1 0.4 5.1e-05 23.2 0.1 2.6 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|347522792|ref|YP_004780362.1| - 8.8e-06 26.0 0.2 0.002 18.4 0.1 2.4 3 0 0 3 3 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|347522792|ref|YP_004780362.1| - 1.9e-05 24.5 0.2 4.6e-05 23.2 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|347522792|ref|YP_004780362.1| - 0.00012 22.1 0.0 0.0002 21.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|347522792|ref|YP_004780362.1| - 0.00012 21.8 0.3 0.00031 20.5 0.1 1.8 2 0 0 2 2 2 1 HxlR-like helix-turn-helix HTH_36 PF13730.6 gi|347522792|ref|YP_004780362.1| - 0.00024 21.0 0.0 0.00045 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|347522792|ref|YP_004780362.1| - 0.00035 20.3 0.1 0.00079 19.2 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain DUF4423 PF14394.6 gi|347522792|ref|YP_004780362.1| - 0.00043 20.0 0.1 0.00071 19.3 0.1 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|347522792|ref|YP_004780362.1| - 0.00048 20.6 1.1 0.0012 19.3 0.2 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|347522792|ref|YP_004780362.1| - 0.00094 19.3 0.2 0.0032 17.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|347522792|ref|YP_004780362.1| - 0.0023 18.1 0.1 0.14 12.3 0.1 2.1 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Mga PF08280.11 gi|347522792|ref|YP_004780362.1| - 0.0027 17.7 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_50 PF18024.1 gi|347522792|ref|YP_004780362.1| - 0.0036 16.9 0.1 0.009 15.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|347522792|ref|YP_004780362.1| - 0.0063 16.4 0.3 0.016 15.1 0.3 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|347522792|ref|YP_004780362.1| - 0.0067 16.1 0.1 0.018 14.7 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.27 gi|347522792|ref|YP_004780362.1| - 0.0072 16.2 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_39 PF14090.6 gi|347522792|ref|YP_004780362.1| - 0.012 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA_edit PF04073.15 gi|347522792|ref|YP_004780362.1| - 0.024 14.7 0.3 0.48 10.5 0.2 2.4 1 1 0 1 1 1 0 Aminoacyl-tRNA editing domain HTH_IclR PF09339.10 gi|347522792|ref|YP_004780362.1| - 0.034 14.0 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|347522792|ref|YP_004780362.1| - 0.037 13.9 0.6 0.059 13.2 0.5 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.20 gi|347522792|ref|YP_004780362.1| - 0.042 13.7 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|347522792|ref|YP_004780362.1| - 0.043 14.0 0.4 0.2 11.9 0.1 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|347522792|ref|YP_004780362.1| - 0.043 13.6 0.3 0.089 12.5 0.3 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_6 PF01418.17 gi|347522792|ref|YP_004780362.1| - 0.044 13.8 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Penicillinase_R PF03965.16 gi|347522792|ref|YP_004780362.1| - 0.052 13.9 0.7 1.8 9.0 0.0 2.6 3 0 0 3 3 3 0 Penicillinase repressor DUF2250 PF10007.9 gi|347522792|ref|YP_004780362.1| - 0.058 13.5 0.5 0.19 11.9 0.1 1.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_28 PF13518.6 gi|347522792|ref|YP_004780362.1| - 0.068 13.3 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|347522792|ref|YP_004780362.1| - 0.071 12.9 0.2 0.18 11.6 0.2 1.8 1 0 0 1 1 1 0 Homeodomain-like domain NapD PF03927.13 gi|347522792|ref|YP_004780362.1| - 0.08 13.0 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 NapD protein GntR PF00392.21 gi|347522792|ref|YP_004780362.1| - 0.095 12.4 0.2 0.2 11.3 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RepL PF05732.11 gi|347522792|ref|YP_004780362.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_30 PF13556.6 gi|347522792|ref|YP_004780362.1| - 0.13 12.1 0.1 0.28 11.0 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain NADH-u_ox-rdase PF10785.9 gi|347522792|ref|YP_004780362.1| - 0.19 12.5 0.0 0.32 11.7 0.0 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF5591 PF17884.1 gi|347522793|ref|YP_004780363.1| - 1.2e-05 25.2 0.0 1.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) DUF104 PF01954.16 gi|347522794|ref|YP_004780364.1| - 2.8e-16 59.7 0.4 3.2e-16 59.5 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|347522795|ref|YP_004780365.1| - 5.6e-12 46.2 0.2 6.1e-12 46.1 0.2 1.0 1 0 0 1 1 1 1 PIN domain Methyltransf_25 PF13649.6 gi|347522797|ref|YP_004780367.1| - 1.3e-14 54.7 0.2 3e-14 53.5 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.14 gi|347522797|ref|YP_004780367.1| - 5.4e-11 42.3 0.0 7.6e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|347522797|ref|YP_004780367.1| - 4.1e-10 39.7 0.0 5.9e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|347522797|ref|YP_004780367.1| - 2.6e-09 37.1 0.0 3.9e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347522797|ref|YP_004780367.1| - 1.5e-08 35.1 0.1 2.9e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347522797|ref|YP_004780367.1| - 1.4e-07 32.1 0.1 4.9e-07 30.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|347522797|ref|YP_004780367.1| - 3.6e-05 23.3 0.1 4.7e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_PK PF05891.12 gi|347522797|ref|YP_004780367.1| - 0.00011 21.8 0.0 0.00015 21.4 0.0 1.1 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_2 PF00891.18 gi|347522797|ref|YP_004780367.1| - 0.00028 20.3 0.0 0.00037 19.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain CheR PF01739.18 gi|347522797|ref|YP_004780367.1| - 0.00055 19.5 0.0 0.83 9.1 0.0 2.4 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_32 PF13679.6 gi|347522797|ref|YP_004780367.1| - 0.0021 18.0 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|347522797|ref|YP_004780367.1| - 0.0088 15.8 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase GidB PF02527.15 gi|347522797|ref|YP_004780367.1| - 0.0097 15.2 0.0 0.018 14.4 0.0 1.5 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_18 PF12847.7 gi|347522797|ref|YP_004780367.1| - 0.018 15.0 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain ThiF PF00899.21 gi|347522798|ref|YP_004780368.1| - 1.2e-70 237.7 0.0 1.4e-70 237.4 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|347522798|ref|YP_004780368.1| - 0.0025 18.1 0.3 0.011 16.0 0.3 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|347522798|ref|YP_004780368.1| - 0.016 14.5 0.5 0.022 14.0 0.5 1.2 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.20 gi|347522798|ref|YP_004780368.1| - 0.022 14.8 0.1 0.084 12.9 0.1 2.0 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|347522798|ref|YP_004780368.1| - 0.051 13.2 0.0 0.088 12.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA KR PF08659.10 gi|347522798|ref|YP_004780368.1| - 0.13 12.1 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 KR domain MoaE PF02391.17 gi|347522799|ref|YP_004780369.1| - 3.9e-30 104.4 1.1 5.7e-30 103.9 0.5 1.6 2 0 0 2 2 2 1 MoaE protein ThiS PF02597.20 gi|347522799|ref|YP_004780369.1| - 5.4e-07 30.2 0.3 2.8e-06 27.8 0.1 2.4 3 0 0 3 3 3 1 ThiS family Ub-Mut7C PF14451.6 gi|347522799|ref|YP_004780369.1| - 0.005 16.7 0.1 0.016 15.0 0.1 1.9 1 0 0 1 1 1 1 Mut7-C ubiquitin ThiS-like PF14453.6 gi|347522799|ref|YP_004780369.1| - 0.006 16.6 0.0 0.081 13.0 0.0 2.5 2 0 0 2 2 2 1 ThiS-like ubiquitin Prok-JAB PF14464.6 gi|347522800|ref|YP_004780370.1| - 1.7e-13 50.4 0.0 2.2e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|347522800|ref|YP_004780370.1| - 0.014 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain DUF4329 PF14220.6 gi|347522800|ref|YP_004780370.1| - 0.16 11.9 0.0 0.3 11.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4329) HypA PF01155.19 gi|347522801|ref|YP_004780371.1| - 1.2e-14 54.3 0.0 1.3e-14 54.2 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|347522801|ref|YP_004780371.1| - 0.0019 17.7 0.4 0.35 10.4 0.1 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|347522801|ref|YP_004780371.1| - 0.0034 17.0 2.6 1.4 8.7 0.2 2.3 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|347522801|ref|YP_004780371.1| - 0.0044 17.0 0.3 1 9.4 0.1 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347522801|ref|YP_004780371.1| - 0.0057 16.5 0.2 3.3 7.7 0.0 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|347522801|ref|YP_004780371.1| - 0.016 15.1 0.4 2.7 8.0 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-ISL3 PF14690.6 gi|347522801|ref|YP_004780371.1| - 0.02 15.5 1.4 4 8.2 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.12 gi|347522801|ref|YP_004780371.1| - 0.023 14.6 0.2 6.5 6.8 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TFIIS_C PF01096.18 gi|347522801|ref|YP_004780371.1| - 0.028 14.3 1.5 3.9 7.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Mut7-C PF01927.16 gi|347522801|ref|YP_004780371.1| - 0.037 14.1 0.0 0.047 13.8 0.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain Zn_Tnp_IS1 PF03811.13 gi|347522801|ref|YP_004780371.1| - 0.039 13.7 2.5 5.5 6.8 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Lar_restr_allev PF14354.6 gi|347522801|ref|YP_004780371.1| - 0.046 14.1 0.1 1.3 9.5 0.0 2.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|347522801|ref|YP_004780371.1| - 0.055 13.6 2.9 0.59 10.3 2.9 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-Dof PF02701.15 gi|347522801|ref|YP_004780371.1| - 0.066 13.4 1.6 10 6.4 0.2 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger zf-IS66 PF13005.7 gi|347522801|ref|YP_004780371.1| - 0.089 13.2 1.5 8.6 6.9 0.1 2.8 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_L37e PF01907.19 gi|347522801|ref|YP_004780371.1| - 0.091 12.9 0.7 3.5 7.8 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.6 gi|347522801|ref|YP_004780371.1| - 0.1 12.4 1.9 6.5 6.6 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain MCM_OB PF17207.3 gi|347522801|ref|YP_004780371.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 MCM OB domain zf-ZPR1 PF03367.13 gi|347522801|ref|YP_004780371.1| - 0.13 12.1 0.1 0.32 10.9 0.1 1.7 1 1 1 2 2 2 0 ZPR1 zinc-finger domain Elf1 PF05129.13 gi|347522801|ref|YP_004780371.1| - 0.14 12.2 0.6 1.4 9.0 0.0 2.0 1 1 0 2 2 2 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|347522801|ref|YP_004780371.1| - 0.3 11.0 0.3 0.3 11.0 0.3 2.5 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ParA PF10609.9 gi|347522802|ref|YP_004780372.1| - 1.1e-44 152.7 0.0 1.4e-43 149.2 0.0 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|347522802|ref|YP_004780372.1| - 1.5e-13 50.9 0.0 2.4e-13 50.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|347522802|ref|YP_004780372.1| - 1e-07 32.0 0.1 4.7e-05 23.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|347522802|ref|YP_004780372.1| - 0.00089 18.5 1.5 0.0042 16.3 0.2 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|347522802|ref|YP_004780372.1| - 0.0011 18.4 0.3 0.0027 17.0 0.3 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|347522802|ref|YP_004780372.1| - 0.033 13.8 1.8 0.13 11.9 1.4 2.2 2 1 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|347522802|ref|YP_004780372.1| - 0.059 13.2 0.0 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop IstB_IS21 PF01695.17 gi|347522802|ref|YP_004780372.1| - 0.095 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Phosphodiest PF01663.22 gi|347522803|ref|YP_004780373.1| - 3.5e-21 76.2 0.0 6.7e-20 72.0 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|347522803|ref|YP_004780373.1| - 0.0078 16.3 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 PglZ domain tRNA-synt_1 PF00133.22 gi|347522804|ref|YP_004780374.1| - 6.5e-56 189.8 0.2 1.7e-44 152.1 0.0 3.1 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|347522804|ref|YP_004780374.1| - 3.1e-25 88.7 0.0 7.1e-14 51.4 0.0 3.2 2 1 1 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|347522804|ref|YP_004780374.1| - 4.6e-24 85.1 0.1 1.3e-23 83.7 0.1 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|347522804|ref|YP_004780374.1| - 1.1e-10 41.3 0.0 1.9e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|347522804|ref|YP_004780374.1| - 1.5e-08 34.4 0.0 2.9e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DUF2316 PF10078.9 gi|347522804|ref|YP_004780374.1| - 0.052 13.8 0.3 0.28 11.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) SIS PF01380.22 gi|347522805|ref|YP_004780375.1| - 1.5e-20 73.4 0.0 3.7e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|347522805|ref|YP_004780375.1| - 1.5e-11 44.5 3.3 9.7e-09 35.4 1.1 2.3 1 1 1 2 2 2 2 SIS domain Isochorismatase PF00857.20 gi|347522805|ref|YP_004780375.1| - 0.00022 21.4 0.0 0.036 14.3 0.0 2.3 1 1 1 2 2 2 2 Isochorismatase family PRMT5 PF05185.16 gi|347522805|ref|YP_004780375.1| - 0.0053 16.6 1.8 0.22 11.3 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase YjeF_N PF03853.15 gi|347522805|ref|YP_004780375.1| - 0.14 12.0 0.3 0.28 11.1 0.3 1.6 1 1 0 1 1 1 0 YjeF-related protein N-terminus Methyltransf_32 PF13679.6 gi|347522805|ref|YP_004780375.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain SHS2_Rpb7-N PF03876.17 gi|347522806|ref|YP_004780376.1| - 1e-17 64.2 0.0 2.4e-17 63.1 0.0 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|347522806|ref|YP_004780376.1| - 1.8e-12 47.4 3.2 1.8e-12 47.4 3.2 1.8 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|347522806|ref|YP_004780376.1| - 0.1 12.8 0.2 0.3 11.3 0.2 1.7 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|347522807|ref|YP_004780377.1| - 1.5e-12 47.4 0.1 1.8e-12 47.2 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.6 gi|347522807|ref|YP_004780377.1| - 0.001 18.7 1.2 0.0015 18.2 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|347522807|ref|YP_004780377.1| - 0.0012 19.5 0.8 0.0016 19.1 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|347522807|ref|YP_004780377.1| - 0.002 18.1 0.6 0.0026 17.8 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|347522807|ref|YP_004780377.1| - 0.0051 16.7 3.6 0.008 16.0 3.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|347522807|ref|YP_004780377.1| - 0.0053 16.5 0.2 0.0067 16.1 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|347522807|ref|YP_004780377.1| - 0.014 15.4 0.2 0.016 15.2 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|347522807|ref|YP_004780377.1| - 0.02 14.4 0.1 0.069 12.7 0.0 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding zf-P11 PF03854.14 gi|347522807|ref|YP_004780377.1| - 0.043 13.5 0.5 0.067 12.9 0.5 1.2 1 0 0 1 1 1 0 P-11 zinc finger UPF0547 PF10571.9 gi|347522807|ref|YP_004780377.1| - 0.097 12.8 2.7 0.15 12.2 2.7 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 NRDD PF13597.6 gi|347522807|ref|YP_004780377.1| - 0.12 11.1 0.3 0.14 11.0 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|347522807|ref|YP_004780377.1| - 0.12 12.5 2.7 7 6.9 2.9 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|347522807|ref|YP_004780377.1| - 0.14 11.8 3.1 1.5 8.6 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|347522807|ref|YP_004780377.1| - 0.22 11.0 0.4 0.22 11.0 0.4 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4H2 PF10146.9 gi|347522807|ref|YP_004780377.1| - 0.42 10.9 1.2 0.51 10.6 1.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein DUF359 PF04019.12 gi|347522808|ref|YP_004780378.1| - 2.8e-30 104.5 0.0 3.9e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) V4R PF02830.18 gi|347522809|ref|YP_004780379.1| - 8.4e-06 25.7 0.2 1.8e-05 24.6 0.2 1.6 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|347522809|ref|YP_004780379.1| - 0.0039 17.1 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2507) XylR_N PF06505.11 gi|347522809|ref|YP_004780379.1| - 0.0065 16.2 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Activator of aromatic catabolism ABC_ATPase PF09818.9 gi|347522811|ref|YP_004780381.1| - 5.4e-134 447.4 0.0 6.5e-134 447.1 0.0 1.1 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|347522811|ref|YP_004780381.1| - 0.00031 21.3 0.0 0.00049 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347522811|ref|YP_004780381.1| - 0.0049 16.6 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|347522811|ref|YP_004780381.1| - 0.0068 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain TPP_enzyme_N PF02776.18 gi|347522811|ref|YP_004780381.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AAA_28 PF13521.6 gi|347522811|ref|YP_004780381.1| - 0.14 12.4 0.1 0.85 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|347522812|ref|YP_004780382.1| - 2.9e-15 56.5 16.0 2.9e-15 56.5 16.0 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_Crp_2 PF13545.6 gi|347522812|ref|YP_004780382.1| - 0.021 14.8 0.2 0.041 13.9 0.2 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|347522812|ref|YP_004780382.1| - 0.082 12.8 0.8 0.2 11.6 0.8 1.6 1 0 0 1 1 1 0 MarR family BPD_transp_1 PF00528.22 gi|347522813|ref|YP_004780383.1| - 9.7e-15 54.8 12.5 9.7e-15 54.8 12.5 2.4 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component VitK2_biosynth PF02621.14 gi|347522814|ref|YP_004780384.1| - 5e-80 268.8 0.0 5.6e-80 268.7 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis NS3 PF17530.2 gi|347522814|ref|YP_004780384.1| - 0.23 11.0 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 Non-structural protein NS3 DUF87 PF01935.17 gi|347522815|ref|YP_004780385.1| - 3e-11 43.9 0.0 4.7e-11 43.2 0.0 1.5 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|347522815|ref|YP_004780385.1| - 0.00036 19.6 0.0 0.00075 18.5 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|347522815|ref|YP_004780385.1| - 0.00043 20.7 0.0 0.0013 19.2 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|347522815|ref|YP_004780385.1| - 0.0011 19.2 0.0 0.03 14.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|347522815|ref|YP_004780385.1| - 0.071 13.2 0.0 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase Virul_Fac PF10139.9 gi|347522815|ref|YP_004780385.1| - 0.21 9.8 0.0 0.35 9.1 0.0 1.2 1 0 0 1 1 1 0 Putative bacterial virulence factor vATP-synt_AC39 PF01992.16 gi|347522816|ref|YP_004780386.1| - 4.8e-07 29.6 0.2 6.1e-07 29.2 0.2 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit V-ATPase_G_2 PF16999.5 gi|347522817|ref|YP_004780387.1| - 0.0023 18.3 19.1 0.0028 18.0 19.1 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit SLATT_4 PF18186.1 gi|347522817|ref|YP_004780387.1| - 0.0072 16.0 1.3 0.011 15.4 0.4 1.5 1 1 1 2 2 2 1 SMODS and SLOG-associating 2TM effector domain family 4 Phasin PF05597.11 gi|347522817|ref|YP_004780387.1| - 0.044 13.8 8.0 0.036 14.1 5.9 1.7 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Phage_Mu_Gam PF07352.12 gi|347522817|ref|YP_004780387.1| - 0.068 13.1 10.0 0.6 10.0 1.3 2.1 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein OmpH PF03938.14 gi|347522817|ref|YP_004780387.1| - 0.074 13.4 5.7 0.093 13.1 5.7 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF1931 PF09123.11 gi|347522817|ref|YP_004780387.1| - 0.093 12.8 4.4 2.6 8.1 0.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1931) Prominin PF05478.11 gi|347522817|ref|YP_004780387.1| - 0.14 10.1 1.0 0.16 9.9 1.0 1.0 1 0 0 1 1 1 0 Prominin XhlA PF10779.9 gi|347522817|ref|YP_004780387.1| - 0.42 10.9 6.8 0.24 11.6 1.9 2.4 1 1 1 2 2 2 0 Haemolysin XhlA Remorin_C PF03763.13 gi|347522817|ref|YP_004780387.1| - 0.66 9.9 13.5 0.7 9.8 3.0 2.2 1 1 1 2 2 2 0 Remorin, C-terminal region DUF885 PF05960.11 gi|347522817|ref|YP_004780387.1| - 0.74 9.4 7.2 0.82 9.2 7.2 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) EF-G-binding_N PF07299.11 gi|347522817|ref|YP_004780387.1| - 1.4 9.5 4.5 1.3 9.6 1.5 2.0 1 1 1 2 2 2 0 Elongation factor G-binding protein, N-terminal YtxH PF12732.7 gi|347522817|ref|YP_004780387.1| - 1.5 9.4 6.3 11 6.7 6.3 2.2 1 1 0 1 1 1 0 YtxH-like protein DUF883 PF05957.13 gi|347522817|ref|YP_004780387.1| - 1.6 9.4 11.1 9.5 6.9 10.9 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) dCache_2 PF08269.11 gi|347522817|ref|YP_004780387.1| - 2 7.5 4.7 2.2 7.4 4.7 1.2 1 0 0 1 1 1 0 Cache domain DUF5446 PF17522.2 gi|347522817|ref|YP_004780387.1| - 2.1 8.6 10.4 0.35 11.1 2.9 2.5 1 1 2 3 3 3 0 Family of unknown function (DUF5446) CorA PF01544.18 gi|347522817|ref|YP_004780387.1| - 4.9 6.4 6.8 14 4.9 6.8 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2203 PF09969.9 gi|347522817|ref|YP_004780387.1| - 5.2 7.8 8.3 1.7 9.4 2.3 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Nbl1_Borealin_N PF10444.9 gi|347522817|ref|YP_004780387.1| - 9.4 6.0 8.7 3.8 7.2 3.4 2.8 2 2 0 2 2 2 0 Nbl1 / Borealin N terminal PadR PF03551.14 gi|347522818|ref|YP_004780388.1| - 1.4e-10 40.9 0.1 2e-10 40.4 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Lactamase_B PF00753.27 gi|347522819|ref|YP_004780389.1| - 5.1e-05 23.4 0.5 7.9e-05 22.8 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|347522819|ref|YP_004780389.1| - 0.00021 20.8 0.0 0.00028 20.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|347522819|ref|YP_004780389.1| - 0.053 13.0 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain OrfB_IS605 PF01385.19 gi|347522819|ref|YP_004780389.1| - 0.2 11.9 0.0 1.2 9.4 0.0 2.1 2 0 0 2 2 2 0 Probable transposase PAPS_reduct PF01507.19 gi|347522820|ref|YP_004780390.1| - 1.4e-08 35.0 0.0 2.1e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|347522820|ref|YP_004780390.1| - 3.3e-05 23.7 0.0 6.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|347522820|ref|YP_004780390.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Glu-tRNAGln PF02686.15 gi|347522821|ref|YP_004780391.1| - 5.2e-13 49.1 0.1 8.6e-13 48.4 0.1 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit HycI PF01750.18 gi|347522822|ref|YP_004780392.1| - 0.0044 16.9 0.0 0.0058 16.4 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease Oxidored_q6 PF01058.22 gi|347522824|ref|YP_004780394.1| - 5.7e-25 87.7 0.0 9.9e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.6 gi|347522824|ref|YP_004780394.1| - 2.3 8.6 6.1 17 5.9 6.1 2.2 1 1 0 1 1 1 0 NiFe/NiFeSe hydrogenase small subunit C-terminal NiFeSe_Hases PF00374.19 gi|347522825|ref|YP_004780395.1| - 6.5e-33 114.4 0.8 3.2e-16 59.3 0.1 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Bap31_Bap29_C PF18035.1 gi|347522825|ref|YP_004780395.1| - 0.27 11.3 3.2 0.47 10.5 3.2 1.4 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain HALZ PF02183.18 gi|347522825|ref|YP_004780395.1| - 0.42 10.9 4.9 0.95 9.7 4.9 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper Fer4 PF00037.27 gi|347522826|ref|YP_004780396.1| - 3.4e-08 33.0 12.7 1.5e-05 24.6 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347522826|ref|YP_004780396.1| - 7.5e-07 29.2 9.1 1.2e-06 28.5 9.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347522826|ref|YP_004780396.1| - 1.1e-06 29.1 5.8 0.011 16.4 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347522826|ref|YP_004780396.1| - 3.6e-06 27.0 11.5 0.00017 21.7 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347522826|ref|YP_004780396.1| - 2.8e-05 24.2 8.0 6.7e-05 23.0 8.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347522826|ref|YP_004780396.1| - 0.00015 22.6 6.3 0.006 17.5 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|347522826|ref|YP_004780396.1| - 0.00016 21.6 14.7 0.015 15.3 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347522826|ref|YP_004780396.1| - 0.00021 21.2 11.8 0.06 13.5 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347522826|ref|YP_004780396.1| - 0.013 16.0 12.0 0.6 10.6 11.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|347522826|ref|YP_004780396.1| - 0.041 14.7 5.9 0.59 11.0 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|347522826|ref|YP_004780396.1| - 0.11 13.2 0.7 0.11 13.2 0.7 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.10 gi|347522826|ref|YP_004780396.1| - 0.12 12.6 5.2 0.76 10.0 0.3 2.2 2 0 0 2 2 2 0 c-SKI Smad4 binding domain Fer4_17 PF13534.6 gi|347522826|ref|YP_004780396.1| - 0.14 12.7 12.8 0.37 11.4 1.4 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|347522826|ref|YP_004780396.1| - 0.16 12.2 12.1 0.21 11.8 1.8 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347522826|ref|YP_004780396.1| - 0.39 11.8 17.0 3 9.0 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|347522826|ref|YP_004780396.1| - 0.71 10.5 11.3 2.3 8.9 3.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|347522826|ref|YP_004780396.1| - 1.8 9.1 9.9 3 8.4 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Methyltrn_RNA_2 PF04013.12 gi|347522827|ref|YP_004780397.1| - 0.0023 17.7 0.1 0.1 12.3 0.0 2.1 2 0 0 2 2 2 2 Putative SAM-dependent RNA methyltransferase GHMP_kinases_N PF00288.26 gi|347522828|ref|YP_004780398.1| - 0.001 19.2 0.7 0.002 18.3 0.7 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain DFP PF04127.15 gi|347522829|ref|YP_004780399.1| - 9.6e-50 169.0 0.0 1.9e-49 168.0 0.0 1.5 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|347522829|ref|YP_004780399.1| - 9.7e-24 83.9 0.0 1.9e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 Flavoprotein P5CR_dimer PF14748.6 gi|347522829|ref|YP_004780399.1| - 0.11 12.7 0.4 4.6 7.6 0.0 2.8 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation Lactamase_B_3 PF13483.6 gi|347522831|ref|YP_004780401.1| - 5.1e-34 117.5 0.1 6.1e-34 117.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|347522831|ref|YP_004780401.1| - 8.6e-12 45.0 3.6 1.6e-09 37.6 0.1 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347522831|ref|YP_004780401.1| - 0.0041 17.2 2.4 0.068 13.2 1.5 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PmbA_TldD PF01523.16 gi|347522832|ref|YP_004780402.1| - 2.5e-15 57.1 0.0 3.7e-15 56.5 0.0 1.3 1 1 0 1 1 1 1 Putative modulator of DNA gyrase Glycos_transf_2 PF00535.26 gi|347522833|ref|YP_004780403.1| - 0.00062 19.6 0.2 0.0015 18.4 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 TmoB PF06234.12 gi|347522833|ref|YP_004780403.1| - 0.21 11.7 1.9 2.3 8.4 0.2 2.9 3 0 0 3 3 3 0 Toluene-4-monooxygenase system protein B (TmoB) DUF108 PF01958.18 gi|347522834|ref|YP_004780404.1| - 1.3e-30 105.6 0.7 2.3e-30 104.8 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|347522834|ref|YP_004780404.1| - 1.7e-20 73.9 1.6 2.9e-20 73.1 0.3 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|347522834|ref|YP_004780404.1| - 7.8e-08 32.5 0.0 1.3e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|347522834|ref|YP_004780404.1| - 1e-06 29.6 0.0 1.8e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|347522834|ref|YP_004780404.1| - 2.4e-05 24.7 0.1 3.7e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ThiF PF00899.21 gi|347522834|ref|YP_004780404.1| - 0.0015 18.0 0.4 0.046 13.1 0.1 2.4 2 0 0 2 2 2 1 ThiF family F420_oxidored PF03807.17 gi|347522834|ref|YP_004780404.1| - 0.0085 16.7 0.2 0.027 15.1 0.2 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|347522834|ref|YP_004780404.1| - 0.029 14.6 0.2 0.084 13.1 0.0 2.0 2 1 0 2 2 2 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|347522834|ref|YP_004780404.1| - 0.038 14.2 0.1 0.071 13.4 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|347522834|ref|YP_004780404.1| - 0.052 13.4 0.6 0.42 10.5 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|347522834|ref|YP_004780404.1| - 0.076 13.2 0.0 0.14 12.3 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|347522834|ref|YP_004780404.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CstA PF02554.14 gi|347522835|ref|YP_004780405.1| - 1.5e-99 333.4 32.4 1.5e-99 333.4 32.4 2.4 2 1 1 3 3 3 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|347522835|ref|YP_004780405.1| - 1.8e-25 89.5 14.8 1.8e-25 89.5 14.8 3.2 3 1 1 4 4 4 1 5TM C-terminal transporter carbon starvation CstA ArsA_ATPase PF02374.15 gi|347522838|ref|YP_004780408.1| - 1.6e-41 142.5 0.0 2e-41 142.2 0.0 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|347522838|ref|YP_004780408.1| - 1.3e-13 51.2 0.0 2.4e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|347522838|ref|YP_004780408.1| - 1.8e-08 34.5 0.0 2.4e-08 34.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|347522838|ref|YP_004780408.1| - 6.4e-07 29.1 0.2 7.9e-05 22.2 0.1 2.4 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ATP_bind_1 PF03029.17 gi|347522838|ref|YP_004780408.1| - 4.3e-06 26.7 0.7 1.1e-05 25.4 0.7 1.7 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein Fer4_NifH PF00142.18 gi|347522838|ref|YP_004780408.1| - 0.00013 21.5 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|347522838|ref|YP_004780408.1| - 0.00094 18.8 1.8 0.002 17.8 0.6 2.1 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|347522838|ref|YP_004780408.1| - 0.0014 18.4 0.1 0.0026 17.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|347522838|ref|YP_004780408.1| - 0.0017 17.9 0.0 0.0044 16.5 0.0 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|347522838|ref|YP_004780408.1| - 0.0026 17.1 0.1 0.11 11.8 0.2 2.4 1 1 1 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|347522838|ref|YP_004780408.1| - 0.0037 16.3 0.1 0.006 15.6 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase PF06745.13 gi|347522838|ref|YP_004780408.1| - 0.0089 15.4 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 KaiC SRP54 PF00448.22 gi|347522838|ref|YP_004780408.1| - 0.021 14.5 0.3 0.049 13.3 0.2 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|347522838|ref|YP_004780408.1| - 0.038 13.2 0.3 0.065 12.4 0.3 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF3368 PF11848.8 gi|347522838|ref|YP_004780408.1| - 0.057 13.2 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) IstB_IS21 PF01695.17 gi|347522838|ref|YP_004780408.1| - 0.06 13.1 0.7 0.15 11.7 0.1 2.0 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|347522838|ref|YP_004780408.1| - 0.064 13.6 0.1 0.16 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|347522838|ref|YP_004780408.1| - 0.1 12.8 0.0 0.22 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|347522838|ref|YP_004780408.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop YjeF_N PF03853.15 gi|347522838|ref|YP_004780408.1| - 0.11 12.4 0.2 0.46 10.4 0.0 2.0 2 1 0 2 2 2 0 YjeF-related protein N-terminus T2SSE PF00437.20 gi|347522838|ref|YP_004780408.1| - 0.12 11.4 0.0 0.28 10.2 0.0 1.6 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|347522838|ref|YP_004780408.1| - 0.26 11.6 1.7 3.3 8.0 0.5 2.6 2 2 0 2 2 2 0 AAA domain Fe-ADH PF00465.19 gi|347522839|ref|YP_004780409.1| - 3.4e-121 404.5 0.0 3.9e-121 404.3 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|347522839|ref|YP_004780409.1| - 2.4e-14 53.7 0.0 4.9e-10 39.5 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|347522839|ref|YP_004780409.1| - 0.13 11.4 0.0 11 5.0 0.0 2.2 2 0 0 2 2 2 0 3-dehydroquinate synthase Amidase PF01425.21 gi|347522840|ref|YP_004780410.1| - 2.2e-119 399.4 0.0 2.7e-119 399.1 0.0 1.0 1 0 0 1 1 1 1 Amidase Meth_synt_2 PF01717.18 gi|347522842|ref|YP_004780412.1| - 7e-72 242.4 0.0 8.3e-72 242.2 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|347522842|ref|YP_004780412.1| - 3e-15 56.5 0.0 1.4e-14 54.3 0.0 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain SHOCT PF09851.9 gi|347522842|ref|YP_004780412.1| - 0.075 12.8 0.2 0.18 11.6 0.2 1.7 1 0 0 1 1 1 0 Short C-terminal domain C2-C2_1 PF11618.8 gi|347522842|ref|YP_004780412.1| - 0.16 12.0 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 First C2 domain of RPGR-interacting protein 1 Pantoate_transf PF02548.15 gi|347522846|ref|YP_004780416.1| - 1.3e-108 362.3 1.2 1.5e-108 362.1 1.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|347522846|ref|YP_004780416.1| - 2.3e-09 37.0 3.0 2.6e-08 33.6 0.9 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase FmdA_AmdA PF03069.15 gi|347522846|ref|YP_004780416.1| - 0.097 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 Acetamidase/Formamidase family Sm_multidrug_ex PF06695.11 gi|347522848|ref|YP_004780418.1| - 2.5e-21 76.5 5.4 3.3e-21 76.2 5.4 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein DUF502 PF04367.13 gi|347522848|ref|YP_004780418.1| - 0.00041 20.2 0.1 0.00054 19.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF502) DNA_pol_B PF00136.21 gi|347522849|ref|YP_004780419.1| - 3.7e-74 250.1 0.0 5.8e-74 249.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|347522849|ref|YP_004780419.1| - 3.6e-43 148.0 0.0 2e-41 142.3 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|347522849|ref|YP_004780419.1| - 7.5e-10 39.0 0.1 1.8e-09 37.8 0.0 1.7 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|347522849|ref|YP_004780419.1| - 7e-05 22.6 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|347522849|ref|YP_004780419.1| - 0.0064 15.4 0.0 0.016 14.1 0.0 1.6 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral DUF1664 PF07889.12 gi|347522849|ref|YP_004780419.1| - 0.77 9.8 3.0 1 9.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Acetyltransf_1 PF00583.25 gi|347522850|ref|YP_004780420.1| - 7.5e-18 64.9 0.3 1e-17 64.5 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|347522850|ref|YP_004780420.1| - 1.4e-12 47.9 0.0 2.3e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|347522850|ref|YP_004780420.1| - 1.6e-10 41.0 0.0 2e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|347522850|ref|YP_004780420.1| - 3.9e-05 23.7 0.0 0.00022 21.3 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|347522850|ref|YP_004780420.1| - 0.00082 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|347522850|ref|YP_004780420.1| - 0.00083 19.5 0.0 0.001 19.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|347522850|ref|YP_004780420.1| - 0.0035 17.0 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain eRF1_1 PF03463.15 gi|347522851|ref|YP_004780421.1| - 7.3e-27 93.9 0.0 1.3e-26 93.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|347522851|ref|YP_004780421.1| - 4.3e-22 78.7 0.0 1.1e-20 74.2 0.0 2.4 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|347522851|ref|YP_004780421.1| - 0.00022 21.5 0.0 0.00051 20.4 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 AAA_22 PF13401.6 gi|347522851|ref|YP_004780421.1| - 0.1 12.9 0.1 8.7 6.6 0.0 2.8 2 1 0 2 2 2 0 AAA domain SBP_bac_5 PF00496.22 gi|347522851|ref|YP_004780421.1| - 0.1 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Amidohydro_2 PF04909.14 gi|347522852|ref|YP_004780422.1| - 0.01 15.7 0.0 0.024 14.4 0.0 1.5 1 1 1 2 2 2 0 Amidohydrolase PK_C PF02887.16 gi|347522852|ref|YP_004780422.1| - 0.079 13.2 0.0 0.5 10.6 0.0 2.1 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain CinA_KH PF18146.1 gi|347522853|ref|YP_004780423.1| - 0.086 13.0 1.8 2.4 8.4 0.0 3.2 3 1 1 4 4 4 0 Damage-inducible protein CinA KH domain LigT_PEase PF02834.16 gi|347522856|ref|YP_004780426.1| - 0.056 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 LigT like Phosphoesterase GntR PF00392.21 gi|347522856|ref|YP_004780426.1| - 0.13 12.0 0.0 0.94 9.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DEAD_assoc PF08494.11 gi|347522857|ref|YP_004780427.1| - 4.9e-58 196.1 1.1 1.2e-57 194.9 1.1 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|347522857|ref|YP_004780427.1| - 1.1e-26 93.7 0.0 3.8e-26 91.9 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|347522857|ref|YP_004780427.1| - 1.4e-16 60.8 0.1 4.7e-16 59.1 0.1 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|347522857|ref|YP_004780427.1| - 1.4e-06 28.5 0.0 3.3e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CcmH PF03918.14 gi|347522857|ref|YP_004780427.1| - 0.0003 20.1 0.2 0.29 10.4 0.0 2.7 2 0 0 2 2 2 2 Cytochrome C biogenesis protein AAA_19 PF13245.6 gi|347522857|ref|YP_004780427.1| - 0.00052 20.4 0.6 0.036 14.4 0.0 3.3 3 1 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|347522857|ref|YP_004780427.1| - 0.013 15.9 0.4 0.48 10.8 0.0 3.0 2 0 0 2 2 2 0 AAA ATPase domain DUF4130 PF13566.6 gi|347522857|ref|YP_004780427.1| - 0.03 14.4 0.0 0.11 12.5 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4130 SNF2_N PF00176.23 gi|347522857|ref|YP_004780427.1| - 0.091 11.5 0.0 0.15 10.7 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|347522857|ref|YP_004780427.1| - 0.36 11.1 4.7 16 5.7 0.0 4.2 5 0 0 5 5 5 0 AAA domain GGACT PF06094.12 gi|347522859|ref|YP_004780429.1| - 4.3e-18 66.1 0.0 6.1e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|347522859|ref|YP_004780429.1| - 0.0097 16.3 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family ImmE5 PF11480.8 gi|347522859|ref|YP_004780429.1| - 0.2 12.2 0.1 0.47 11.0 0.0 1.5 2 0 0 2 2 2 0 Colicin-E5 Imm protein Peptidase_C25 PF01364.18 gi|347522861|ref|YP_004780431.1| - 1.9e-18 66.8 0.0 3.1e-17 62.8 0.0 2.1 1 1 0 1 1 1 1 Peptidase family C25 DUF4010 PF13194.6 gi|347522862|ref|YP_004780432.1| - 0.0061 16.3 7.9 0.0066 16.2 7.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4010) Trp_oprn_chp PF09534.10 gi|347522862|ref|YP_004780432.1| - 0.39 10.5 13.2 0.51 10.1 13.2 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) EMG1 PF03587.14 gi|347522863|ref|YP_004780433.1| - 3.1e-45 154.2 0.0 3.5e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Glyco_transf_4 PF13439.6 gi|347522863|ref|YP_004780433.1| - 0.085 12.8 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 BCA_ABC_TP_C PF12399.8 gi|347522863|ref|YP_004780433.1| - 3.3 7.7 4.7 1.4 8.9 1.3 2.0 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter Nitroreductase PF00881.24 gi|347522866|ref|YP_004780436.1| - 2.6e-33 115.5 0.0 3.1e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|347522866|ref|YP_004780436.1| - 2.5e-06 27.2 0.0 0.001 18.7 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase Toprim_Crpt PF13342.6 gi|347522866|ref|YP_004780436.1| - 0.21 11.6 0.0 0.45 10.5 0.0 1.5 1 0 0 1 1 1 0 C-terminal repeat of topoisomerase YHS PF04945.13 gi|347522867|ref|YP_004780437.1| - 2e-18 66.2 0.3 2.3e-18 66.0 0.3 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|347522867|ref|YP_004780437.1| - 0.00018 21.8 0.7 0.00024 21.3 0.7 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|347522867|ref|YP_004780437.1| - 0.0012 18.8 0.1 0.0017 18.3 0.1 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|347522867|ref|YP_004780437.1| - 0.035 13.6 0.0 0.044 13.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function E1-E2_ATPase PF00122.20 gi|347522868|ref|YP_004780438.1| - 1.1e-48 165.2 1.7 1.1e-48 165.2 1.7 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|347522868|ref|YP_004780438.1| - 1.9e-39 136.1 1.5 4e-39 135.1 1.5 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|347522868|ref|YP_004780438.1| - 2.5e-11 43.9 0.5 1.3e-05 25.6 0.1 3.2 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|347522868|ref|YP_004780438.1| - 2.2e-06 27.6 0.8 0.0036 17.1 0.3 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|347522868|ref|YP_004780438.1| - 0.00017 21.7 0.1 0.00087 19.4 0.1 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|347522868|ref|YP_004780438.1| - 0.00048 20.6 0.1 0.004 17.6 0.1 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|347522868|ref|YP_004780438.1| - 0.0067 16.5 0.0 0.16 12.1 0.0 3.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PASTA PF03793.19 gi|347522868|ref|YP_004780438.1| - 0.15 11.9 0.6 3.8 7.4 0.0 3.3 4 0 0 4 4 4 0 PASTA domain Desulfoferrodox PF01880.18 gi|347522869|ref|YP_004780439.1| - 5.4e-29 100.6 0.0 6.3e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|347522869|ref|YP_004780439.1| - 2.5e-12 47.0 0.0 3.1e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY HicB_lk_antitox PF15919.5 gi|347522870|ref|YP_004780440.1| - 0.02 15.0 0.1 0.024 14.8 0.1 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system TetR_C_3 PF08362.11 gi|347522870|ref|YP_004780440.1| - 0.067 13.1 0.1 0.077 12.9 0.1 1.1 1 0 0 1 1 1 0 YcdC-like protein, C-terminal region cwf21 PF08312.12 gi|347522870|ref|YP_004780440.1| - 4 7.7 6.4 1.5 9.0 1.5 2.5 2 1 0 2 2 2 0 cwf21 domain Lactamase_B PF00753.27 gi|347522871|ref|YP_004780441.1| - 3.2e-13 50.1 0.6 3.2e-13 50.1 0.6 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|347522871|ref|YP_004780441.1| - 8.6e-07 28.7 0.0 1.4e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|347522871|ref|YP_004780441.1| - 0.0023 17.4 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain DpaA_N PF16924.5 gi|347522871|ref|YP_004780441.1| - 0.0052 16.9 0.0 0.021 14.9 0.0 1.9 2 0 0 2 2 2 1 Dipicolinate synthase subunit A N-terminal domain Lactamase_B_3 PF13483.6 gi|347522871|ref|YP_004780441.1| - 0.017 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Glyco_transf_4 PF13439.6 gi|347522871|ref|YP_004780441.1| - 0.03 14.3 0.1 1.4 8.9 0.0 2.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Flavodoxin_1 PF00258.25 gi|347522871|ref|YP_004780441.1| - 0.035 14.3 0.1 0.09 13.0 0.1 1.8 1 1 0 1 1 1 0 Flavodoxin DUF2283 PF10049.9 gi|347522874|ref|YP_004780444.1| - 1e-18 67.3 0.6 1.4e-18 66.8 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF987 PF06174.11 gi|347522874|ref|YP_004780444.1| - 0.087 12.8 0.2 0.14 12.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF987) DUF4258 PF14076.6 gi|347522875|ref|YP_004780445.1| - 4.6e-16 58.9 0.4 5.2e-16 58.8 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) PBECR3 PF18812.1 gi|347522875|ref|YP_004780445.1| - 0.00015 21.7 0.0 0.00018 21.5 0.0 1.0 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 PBECR2 PF18810.1 gi|347522875|ref|YP_004780445.1| - 0.00025 21.3 0.0 0.00033 20.9 0.0 1.1 1 0 0 1 1 1 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 PBECR1 PF18809.1 gi|347522875|ref|YP_004780445.1| - 0.071 13.8 0.0 0.078 13.6 0.0 1.1 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 BrnT_toxin PF04365.13 gi|347522875|ref|YP_004780445.1| - 0.095 13.1 0.1 0.23 11.8 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system GHL5 PF14872.6 gi|347522876|ref|YP_004780446.1| - 0.083 10.9 0.0 0.09 10.8 0.0 1.0 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 DUF2201_N PF13203.6 gi|347522877|ref|YP_004780447.1| - 0.039 13.6 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain Phage_integr_3 PF16795.5 gi|347522878|ref|YP_004780448.1| - 7.6e-09 35.7 0.0 1.2e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal phage integrase RHH_1 PF01402.21 gi|347522879|ref|YP_004780449.1| - 1.5e-05 24.8 0.3 6.5e-05 22.7 0.0 2.0 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_4 PF13467.6 gi|347522879|ref|YP_004780449.1| - 0.0036 17.2 0.0 0.0065 16.3 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_7 PF16777.5 gi|347522879|ref|YP_004780449.1| - 0.075 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator, RHH-like, CopG ZT_dimer PF16916.5 gi|347522880|ref|YP_004780450.1| - 0.1 12.7 0.1 0.33 11.1 0.1 1.9 1 1 0 1 1 1 0 Dimerisation domain of Zinc Transporter DUF87 PF01935.17 gi|347522881|ref|YP_004780451.1| - 2.2e-09 37.8 0.0 1.9e-08 34.7 0.0 2.5 2 1 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|347522881|ref|YP_004780451.1| - 1.5e-05 24.5 0.0 3.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|347522881|ref|YP_004780451.1| - 8.6e-05 21.6 0.0 0.00045 19.2 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|347522881|ref|YP_004780451.1| - 0.0003 21.1 0.0 0.39 11.0 0.0 3.2 3 0 0 3 3 3 2 AAA domain Zot PF05707.12 gi|347522881|ref|YP_004780451.1| - 0.0036 17.0 0.0 0.015 15.0 0.0 1.9 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA PF00004.29 gi|347522881|ref|YP_004780451.1| - 0.0051 17.2 0.2 0.08 13.4 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|347522881|ref|YP_004780451.1| - 0.01 14.8 0.0 0.16 10.9 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_21 PF13304.6 gi|347522881|ref|YP_004780451.1| - 0.15 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|347522881|ref|YP_004780451.1| - 1.2 9.6 3.5 3.5 8.2 0.0 3.4 4 0 0 4 4 4 0 AAA domain WG_beta_rep PF14903.6 gi|347522882|ref|YP_004780452.1| - 0.15 12.3 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 WG containing repeat DUF3522 PF12036.8 gi|347522883|ref|YP_004780453.1| - 0.069 13.4 0.1 0.081 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) DUF202 PF02656.15 gi|347522883|ref|YP_004780453.1| - 1.1 9.7 5.8 5.8 7.4 5.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Neurensin PF14927.6 gi|347522883|ref|YP_004780453.1| - 8.6 6.1 6.1 1.1 8.9 0.7 2.0 1 1 1 2 2 2 0 Neurensin CarboxypepD_reg PF13620.6 gi|347522885|ref|YP_004780455.1| - 0.00051 20.3 0.0 0.002 18.4 0.0 2.0 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain BACON PF13004.7 gi|347522885|ref|YP_004780455.1| - 0.075 13.0 0.1 0.27 11.2 0.1 1.9 1 0 0 1 1 1 0 Putative binding domain, N-terminal PIN PF01850.21 gi|347522886|ref|YP_004780456.1| - 5.8e-11 42.9 0.6 7.9e-11 42.5 0.6 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|347522886|ref|YP_004780456.1| - 0.0032 18.2 1.7 0.0097 16.7 0.8 1.9 1 1 1 2 2 2 1 PIN domain DUF104 PF01954.16 gi|347522887|ref|YP_004780457.1| - 3.9e-15 56.0 0.3 4.4e-15 55.9 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 LSDAT_prok PF18171.1 gi|347522887|ref|YP_004780457.1| - 0.13 11.5 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 SLOG in TRPM, prokaryote ABATE PF07336.11 gi|347522889|ref|YP_004780459.1| - 5.1 7.8 8.0 0.88 10.2 2.0 2.0 1 1 1 2 2 2 0 Putative stress-induced transcription regulator DUF390 PF04094.14 gi|347522890|ref|YP_004780460.1| - 0.042 12.2 0.0 0.066 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF390) DUF4352 PF11611.8 gi|347522892|ref|YP_004780462.1| - 0.00016 21.9 0.0 0.0003 21.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) CARDB PF07705.11 gi|347522892|ref|YP_004780462.1| - 0.00023 21.4 3.1 0.0005 20.3 2.7 1.9 1 1 1 2 2 2 1 CARDB DUF4232 PF14016.6 gi|347522892|ref|YP_004780462.1| - 0.0051 16.9 3.7 0.05 13.8 3.7 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4232) PAAR_motif PF05488.13 gi|347522892|ref|YP_004780462.1| - 0.019 15.1 0.3 0.051 13.8 0.3 2.0 1 1 0 1 1 1 0 PAAR motif CBM49 PF09478.10 gi|347522892|ref|YP_004780462.1| - 0.13 12.5 0.3 0.26 11.6 0.3 1.5 1 1 0 1 1 1 0 Carbohydrate binding domain CBM49 Ldh_1_C PF02866.18 gi|347522892|ref|YP_004780462.1| - 0.48 10.3 2.6 0.3 11.0 0.3 1.7 2 0 0 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain Pilin_N PF07790.11 gi|347522892|ref|YP_004780462.1| - 1.6 9.7 7.4 0.43 11.5 4.1 1.7 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal DUF3869 PF12985.7 gi|347522892|ref|YP_004780462.1| - 3.4 8.1 9.2 3.6 8.0 3.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3869) Herpes_UL25 PF01499.16 gi|347522894|ref|YP_004780464.1| - 0.23 9.9 0.2 0.33 9.4 0.2 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family Bromo_TP PF07524.13 gi|347522895|ref|YP_004780465.1| - 0.024 14.7 0.0 0.083 12.9 0.0 1.9 2 0 0 2 2 2 0 Bromodomain associated MucBP PF06458.12 gi|347522896|ref|YP_004780466.1| - 0.0035 18.3 1.0 0.0062 17.5 0.3 1.7 1 1 1 2 2 2 2 MucBP domain CARDB PF07705.11 gi|347522896|ref|YP_004780466.1| - 0.0039 17.4 0.1 0.0067 16.7 0.1 1.4 1 1 0 1 1 1 1 CARDB DUF4307 PF14155.6 gi|347522896|ref|YP_004780466.1| - 0.093 12.6 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Pilin_N PF07790.11 gi|347522896|ref|YP_004780466.1| - 1.6 9.7 6.9 2.8 8.9 6.9 1.8 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal AAA_10 PF12846.7 gi|347522897|ref|YP_004780467.1| - 7.4e-08 31.7 0.0 6.4e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|347522897|ref|YP_004780467.1| - 1.4e-07 31.9 0.0 2.4e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TPR_14 PF13428.6 gi|347522898|ref|YP_004780468.1| - 0.031 15.1 2.1 22 6.2 0.0 3.6 2 1 1 3 3 3 0 Tetratricopeptide repeat CarboxypepD_reg PF13620.6 gi|347522899|ref|YP_004780469.1| - 2.3e-06 27.8 0.1 4.6e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain YdjM PF04307.14 gi|347522900|ref|YP_004780470.1| - 4e-14 52.3 16.6 8.5e-14 51.2 16.6 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1286 PF06939.11 gi|347522900|ref|YP_004780470.1| - 1.9e-05 24.9 0.0 3.4e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) DUF3185 PF11381.8 gi|347522900|ref|YP_004780470.1| - 0.013 15.5 0.2 8.1 6.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) AI-2E_transport PF01594.16 gi|347522901|ref|YP_004780471.1| - 0.026 13.7 4.0 0.029 13.5 4.0 1.0 1 0 0 1 1 1 0 AI-2E family transporter T2SSF PF00482.23 gi|347522902|ref|YP_004780472.1| - 3.3e-09 36.7 11.8 4.4e-07 29.9 2.9 3.5 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F SLATT_1 PF18181.1 gi|347522902|ref|YP_004780472.1| - 0.011 15.7 0.2 0.011 15.7 0.2 6.9 6 1 0 7 7 7 0 SMODS and SLOG-associating 2TM effector domain 1 T2SSE PF00437.20 gi|347522903|ref|YP_004780473.1| - 8.6e-36 123.4 0.0 1.2e-35 122.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|347522903|ref|YP_004780473.1| - 0.0035 17.1 0.0 0.19 11.5 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain Gly-zipper_Omp PF13488.6 gi|347522904|ref|YP_004780474.1| - 0.03 14.3 10.3 0.043 13.8 10.3 1.2 1 0 0 1 1 1 0 Glycine zipper Lipase_3 PF01764.25 gi|347522904|ref|YP_004780474.1| - 0.27 11.1 1.4 0.3 10.9 1.4 1.2 1 0 0 1 1 1 0 Lipase (class 3) Gly-zipper_YMGG PF13441.6 gi|347522904|ref|YP_004780474.1| - 0.8 9.5 15.4 1.2 8.9 15.4 1.2 1 0 0 1 1 1 0 YMGG-like Gly-zipper Bacteriocin_IIc PF10439.9 gi|347522904|ref|YP_004780474.1| - 1.5 9.0 9.3 2.3 8.4 9.3 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide YtxH PF12732.7 gi|347522904|ref|YP_004780474.1| - 3.6 8.2 9.2 37 4.9 9.2 2.2 1 1 0 1 1 1 0 YtxH-like protein DUF5304 PF17230.2 gi|347522905|ref|YP_004780475.1| - 0.23 11.7 0.0 3.6 7.8 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5304) PI_PP_I PF18363.1 gi|347522907|ref|YP_004780477.1| - 0.19 12.0 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide phosphatase insertion domain RHH_1 PF01402.21 gi|347522909|ref|YP_004780479.1| - 1.3e-07 31.3 0.7 1.3e-07 31.3 0.7 2.1 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family zf-C2H2_4 PF13894.6 gi|347522909|ref|YP_004780479.1| - 1.4e-06 28.6 6.1 9.5e-06 26.0 1.5 2.8 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|347522909|ref|YP_004780479.1| - 3.4e-06 27.2 1.2 3.4e-06 27.2 1.2 2.3 3 0 0 3 3 2 1 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|347522909|ref|YP_004780479.1| - 0.0018 18.1 7.9 0.011 15.6 0.2 2.8 2 0 0 2 2 2 1 zinc-finger of a C2HC-type ADK_lid PF05191.14 gi|347522909|ref|YP_004780479.1| - 0.0025 17.8 2.8 0.0053 16.7 2.8 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid zf-Di19 PF05605.12 gi|347522909|ref|YP_004780479.1| - 0.011 16.1 5.6 0.029 14.7 5.5 1.8 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_SprT PF17283.2 gi|347522909|ref|YP_004780479.1| - 0.048 13.6 4.3 0.048 13.6 4.3 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|347522909|ref|YP_004780479.1| - 0.091 12.9 2.9 0.3 11.2 2.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|347522909|ref|YP_004780479.1| - 0.26 11.8 5.4 2.1 8.9 1.4 2.5 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-H2C2_5 PF13909.6 gi|347522909|ref|YP_004780479.1| - 0.4 10.5 3.9 0.93 9.3 3.9 1.7 1 1 0 1 1 1 0 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 gi|347522909|ref|YP_004780479.1| - 0.53 10.8 5.8 1.7 9.2 0.3 2.6 2 0 0 2 2 2 0 Zinc-finger double domain GAS PF13851.6 gi|347522912|ref|YP_004780482.1| - 1.3e-07 31.2 3.5 0.0027 17.1 0.2 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding ADIP PF11559.8 gi|347522912|ref|YP_004780482.1| - 0.0003 20.9 4.4 0.0044 17.1 0.9 2.2 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.9 gi|347522912|ref|YP_004780482.1| - 0.00031 21.0 0.3 0.43 10.9 0.1 2.2 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 gi|347522912|ref|YP_004780482.1| - 0.00071 19.8 2.3 0.012 15.9 0.3 2.8 3 0 0 3 3 3 1 Seryl-tRNA synthetase N-terminal domain CorA PF01544.18 gi|347522912|ref|YP_004780482.1| - 0.0013 18.2 5.1 0.19 11.0 0.2 2.5 2 1 0 2 2 2 2 CorA-like Mg2+ transporter protein CK2S PF15011.6 gi|347522912|ref|YP_004780482.1| - 0.0034 17.3 4.0 0.093 12.6 0.1 2.4 2 0 0 2 2 2 1 Casein Kinase 2 substrate TMF_TATA_bd PF12325.8 gi|347522912|ref|YP_004780482.1| - 0.0088 16.3 11.0 0.21 11.8 2.2 2.2 2 0 0 2 2 2 2 TATA element modulatory factor 1 TATA binding FPP PF05911.11 gi|347522912|ref|YP_004780482.1| - 0.013 13.7 2.4 0.62 8.2 0.3 2.0 2 0 0 2 2 2 0 Filament-like plant protein, long coiled-coil Tropomyosin_1 PF12718.7 gi|347522912|ref|YP_004780482.1| - 0.014 15.6 6.5 0.65 10.1 1.5 2.2 2 0 0 2 2 2 0 Tropomyosin like ABC_tran_CTD PF16326.5 gi|347522912|ref|YP_004780482.1| - 0.014 15.6 13.3 0.18 12.1 2.8 2.8 2 1 0 2 2 2 0 ABC transporter C-terminal domain DUF4201 PF13870.6 gi|347522912|ref|YP_004780482.1| - 0.031 14.0 3.7 0.34 10.6 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Spc7 PF08317.11 gi|347522912|ref|YP_004780482.1| - 0.032 13.1 5.1 1.4 7.7 0.1 2.6 3 0 0 3 3 3 0 Spc7 kinetochore protein Med9 PF07544.13 gi|347522912|ref|YP_004780482.1| - 0.032 14.3 1.7 0.032 14.3 1.7 2.1 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 FUSC PF04632.12 gi|347522912|ref|YP_004780482.1| - 0.078 11.5 21.7 0.026 13.1 7.7 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family Fzo_mitofusin PF04799.13 gi|347522912|ref|YP_004780482.1| - 0.088 12.4 1.3 0.36 10.4 0.2 2.0 2 0 0 2 2 2 0 fzo-like conserved region Fez1 PF06818.15 gi|347522912|ref|YP_004780482.1| - 0.16 12.4 3.3 4.7 7.6 0.6 2.2 2 0 0 2 2 2 0 Fez1 FapA PF03961.13 gi|347522912|ref|YP_004780482.1| - 0.16 10.6 0.4 1.4 7.4 0.1 1.9 2 0 0 2 2 2 0 Flagellar Assembly Protein A BAR_3 PF16746.5 gi|347522912|ref|YP_004780482.1| - 0.24 11.1 0.6 22 4.6 0.0 2.3 2 0 0 2 2 2 0 BAR domain of APPL family CLZ PF16526.5 gi|347522912|ref|YP_004780482.1| - 0.45 10.9 15.6 2.5 8.5 3.3 3.8 2 2 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Rx_N PF18052.1 gi|347522912|ref|YP_004780482.1| - 0.48 10.7 6.5 0.54 10.6 0.8 2.5 2 0 0 2 2 2 0 Rx N-terminal domain Dynamitin PF04912.14 gi|347522912|ref|YP_004780482.1| - 0.5 9.6 5.4 0.21 10.9 0.3 2.1 2 0 0 2 2 2 0 Dynamitin PilO PF04350.13 gi|347522912|ref|YP_004780482.1| - 0.61 10.2 2.4 0.77 9.9 0.4 1.9 2 0 0 2 2 2 0 Pilus assembly protein, PilO H-kinase_dim PF02895.14 gi|347522912|ref|YP_004780482.1| - 0.66 10.4 6.2 1.1 9.6 0.4 3.2 3 1 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain kleA_kleC PF17383.2 gi|347522912|ref|YP_004780482.1| - 0.88 9.9 7.8 4.1 7.8 3.5 3.4 2 1 1 3 3 3 0 Uncharacterized KorC regulated protein A FlgN PF05130.12 gi|347522912|ref|YP_004780482.1| - 0.89 10.1 9.9 4.1 7.9 3.1 2.3 2 0 0 2 2 2 0 FlgN protein PspA_IM30 PF04012.12 gi|347522912|ref|YP_004780482.1| - 1.1 8.8 18.6 11 5.5 3.0 3.6 2 2 0 2 2 2 0 PspA/IM30 family Atg14 PF10186.9 gi|347522912|ref|YP_004780482.1| - 1.2 8.2 6.0 0.37 9.8 2.3 1.8 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc24 PF08286.11 gi|347522912|ref|YP_004780482.1| - 1.5 9.1 5.9 8.8 6.6 1.3 3.0 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 MbeD_MobD PF04899.12 gi|347522912|ref|YP_004780482.1| - 1.8 8.7 5.1 8.6 6.6 0.5 3.2 2 1 0 2 2 2 0 MbeD/MobD like Lambda_CIII PF02061.16 gi|347522912|ref|YP_004780482.1| - 1.8 8.7 8.9 9.9 6.3 0.1 3.8 3 1 0 3 3 2 0 Lambda Phage CIII COG2 PF06148.11 gi|347522912|ref|YP_004780482.1| - 2.2 8.3 4.5 11 6.1 0.6 2.5 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 SeqA_N PF17206.3 gi|347522912|ref|YP_004780482.1| - 2.3 7.6 6.4 0.55 9.6 0.9 2.7 2 0 0 2 2 2 0 SeqA protein N-terminal domain CENP-F_leu_zip PF10473.9 gi|347522912|ref|YP_004780482.1| - 2.7 8.0 13.7 0.44 10.6 3.0 2.5 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ZapB PF06005.12 gi|347522912|ref|YP_004780482.1| - 3.7 8.1 16.7 2.6 8.5 4.4 3.4 2 1 1 3 3 3 0 Cell division protein ZapB DHR10 PF18595.1 gi|347522912|ref|YP_004780482.1| - 8.7 6.4 18.6 1.6 8.8 5.4 3.0 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain DUF5591 PF17884.1 gi|347522914|ref|YP_004780484.1| - 5.1e-07 29.7 0.0 1.4e-06 28.3 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) Kdo PF06293.14 gi|347522916|ref|YP_004780486.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF3040 PF11239.8 gi|347522917|ref|YP_004780487.1| - 0.41 10.9 0.2 0.41 10.9 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF4282 PF14110.6 gi|347522918|ref|YP_004780488.1| - 2.3 9.0 7.7 8.8 7.1 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) NAC PF01849.18 gi|347522919|ref|YP_004780489.1| - 0.052 13.5 0.2 0.81 9.7 0.1 2.3 2 1 0 2 2 2 0 NAC domain Thi4 PF01946.17 gi|347522920|ref|YP_004780490.1| - 7.4e-69 231.6 2.2 8.7e-69 231.3 2.2 1.1 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|347522920|ref|YP_004780490.1| - 1.2e-12 48.1 8.5 7.3e-08 32.4 2.4 2.5 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|347522920|ref|YP_004780490.1| - 5.2e-12 45.6 11.2 2e-07 30.5 1.5 3.1 2 1 1 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.6 gi|347522920|ref|YP_004780490.1| - 1.6e-09 37.9 2.4 5.7e-09 36.1 2.4 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|347522920|ref|YP_004780490.1| - 2.4e-08 33.6 0.3 5.2e-08 32.5 0.2 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|347522920|ref|YP_004780490.1| - 1.6e-07 30.9 0.2 2.4e-07 30.3 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|347522920|ref|YP_004780490.1| - 3.8e-07 29.2 1.0 6.1e-07 28.5 1.0 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.7 gi|347522920|ref|YP_004780490.1| - 4e-07 29.8 6.6 2.4e-06 27.2 6.6 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|347522920|ref|YP_004780490.1| - 1.2e-05 24.6 0.3 2.1e-05 23.8 0.3 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|347522920|ref|YP_004780490.1| - 3.9e-05 23.1 0.4 8.9e-05 21.9 0.3 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|347522920|ref|YP_004780490.1| - 0.00017 21.0 0.9 0.00036 20.0 0.9 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|347522920|ref|YP_004780490.1| - 0.0018 17.4 0.2 0.0049 16.0 0.1 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein Glu_dehyd_C PF16912.5 gi|347522920|ref|YP_004780490.1| - 0.0079 15.7 0.2 0.024 14.1 0.0 1.9 2 1 0 2 2 2 1 Glucose dehydrogenase C-terminus Shikimate_DH PF01488.20 gi|347522920|ref|YP_004780490.1| - 0.019 15.1 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.27 gi|347522920|ref|YP_004780490.1| - 0.03 14.9 2.1 0.085 13.4 1.2 2.3 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|347522920|ref|YP_004780490.1| - 0.043 13.1 0.4 0.12 11.6 0.3 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|347522920|ref|YP_004780490.1| - 0.075 11.9 2.1 0.13 11.1 1.2 1.7 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|347522920|ref|YP_004780490.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 ThiF family K_oxygenase PF13434.6 gi|347522920|ref|YP_004780490.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|347522920|ref|YP_004780490.1| - 0.99 9.4 3.7 0.76 9.7 1.6 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding SOR_SNZ PF01680.17 gi|347522921|ref|YP_004780491.1| - 1e-100 335.8 3.1 1e-100 335.8 3.1 1.4 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|347522921|ref|YP_004780491.1| - 8.8e-07 28.5 3.3 8.3e-06 25.3 0.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|347522921|ref|YP_004780491.1| - 0.00011 21.8 0.6 0.54 9.7 0.0 3.2 2 1 1 3 3 3 2 Histidine biosynthesis protein OMPdecase PF00215.24 gi|347522921|ref|YP_004780491.1| - 0.0011 18.6 0.7 0.99 8.9 0.0 2.8 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family Dus PF01207.17 gi|347522921|ref|YP_004780491.1| - 0.0013 17.9 1.4 0.29 10.2 0.1 2.3 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|347522921|ref|YP_004780491.1| - 0.0026 17.2 4.3 0.012 15.0 0.1 2.2 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|347522921|ref|YP_004780491.1| - 0.0031 16.7 0.2 0.25 10.5 0.0 2.4 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|347522921|ref|YP_004780491.1| - 0.0053 16.0 0.0 0.27 10.4 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase TetR_C_27 PF17935.1 gi|347522921|ref|YP_004780491.1| - 0.0074 16.3 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain AdoHcyase PF05221.17 gi|347522922|ref|YP_004780492.1| - 7.2e-70 235.5 0.0 2.7e-38 131.8 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|347522922|ref|YP_004780492.1| - 2.2e-57 193.6 0.1 3.9e-57 192.8 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|347522922|ref|YP_004780492.1| - 1.5e-08 34.2 0.3 3.1e-08 33.2 0.3 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|347522922|ref|YP_004780492.1| - 1.6e-07 31.0 0.1 3.2e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain zf-RNPHF PF08080.12 gi|347522922|ref|YP_004780492.1| - 0.12 12.4 0.3 0.25 11.3 0.3 1.5 1 0 0 1 1 1 0 RNPHF zinc finger THF_DHG_CYH_C PF02882.19 gi|347522922|ref|YP_004780492.1| - 0.18 11.1 0.9 1.3 8.3 1.0 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sld5 PF05916.11 gi|347522923|ref|YP_004780493.1| - 0.017 15.6 1.0 0.024 15.1 1.0 1.3 1 0 0 1 1 1 0 GINS complex protein CYTH PF01928.21 gi|347522923|ref|YP_004780493.1| - 0.16 11.8 2.6 0.21 11.5 0.4 2.0 2 0 0 2 2 2 0 CYTH domain HMGL-like PF00682.19 gi|347522924|ref|YP_004780494.1| - 1.4e-50 172.3 0.0 2.1e-50 171.8 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|347522924|ref|YP_004780494.1| - 2.9e-23 82.2 0.0 5.5e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Radical_SAM PF04055.21 gi|347522924|ref|YP_004780494.1| - 0.0096 16.3 0.4 0.15 12.5 0.1 2.8 2 2 1 3 3 3 1 Radical SAM superfamily PSK_trans_fac PF07704.11 gi|347522924|ref|YP_004780494.1| - 0.06 14.1 0.1 19 6.1 0.0 2.8 1 1 1 2 2 2 0 Rv0623-like transcription factor URO-D PF01208.17 gi|347522924|ref|YP_004780494.1| - 0.09 11.9 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) Glutaredoxin PF00462.24 gi|347522925|ref|YP_004780495.1| - 3e-07 30.6 0.1 6e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.14 gi|347522925|ref|YP_004780495.1| - 0.0007 20.0 0.6 0.0013 19.1 0.0 1.7 2 0 0 2 2 2 1 Glutaredoxin-like domain (DUF836) Cad PF03596.13 gi|347522925|ref|YP_004780495.1| - 0.17 11.7 4.9 0.12 12.2 2.5 2.0 2 0 0 2 2 2 0 Cadmium resistance transporter Pribosyltran PF00156.27 gi|347522926|ref|YP_004780496.1| - 6.8e-09 35.4 0.3 1.4e-08 34.4 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain SBP_bac_11 PF13531.6 gi|347522927|ref|YP_004780497.1| - 1.8e-32 112.9 0.0 2.2e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|347522928|ref|YP_004780498.1| - 1.8e-14 53.9 18.1 1.8e-14 53.9 18.1 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|347522929|ref|YP_004780499.1| - 6.6e-30 104.4 0.0 9.4e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347522929|ref|YP_004780499.1| - 3.6e-08 33.6 2.0 0.00068 19.5 0.4 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|347522929|ref|YP_004780499.1| - 0.00016 22.2 0.0 0.00027 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|347522929|ref|YP_004780499.1| - 0.00023 21.3 0.3 0.0022 18.2 0.3 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|347522929|ref|YP_004780499.1| - 0.00069 19.3 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347522929|ref|YP_004780499.1| - 0.00089 19.7 0.6 0.0036 17.7 0.6 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|347522929|ref|YP_004780499.1| - 0.0017 18.0 0.1 0.0033 17.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|347522929|ref|YP_004780499.1| - 0.0028 17.1 0.4 0.03 13.7 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|347522929|ref|YP_004780499.1| - 0.0036 17.2 0.1 0.0082 16.1 0.1 1.8 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.6 gi|347522929|ref|YP_004780499.1| - 0.0051 17.1 0.2 0.013 15.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347522929|ref|YP_004780499.1| - 0.0061 16.3 0.0 0.014 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|347522929|ref|YP_004780499.1| - 0.0077 16.2 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 gi|347522929|ref|YP_004780499.1| - 0.0093 15.0 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_ATPase PF09818.9 gi|347522929|ref|YP_004780499.1| - 0.027 13.3 1.1 1.1 8.0 0.2 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|347522929|ref|YP_004780499.1| - 0.04 13.8 0.0 0.063 13.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|347522929|ref|YP_004780499.1| - 0.045 14.0 0.0 0.25 11.5 0.0 2.3 2 1 1 3 3 3 0 AAA domain AAA PF00004.29 gi|347522929|ref|YP_004780499.1| - 0.045 14.2 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|347522929|ref|YP_004780499.1| - 0.075 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|347522929|ref|YP_004780499.1| - 0.078 12.1 0.0 0.31 10.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_19 PF13245.6 gi|347522929|ref|YP_004780499.1| - 0.08 13.3 0.1 0.23 11.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|347522929|ref|YP_004780499.1| - 0.086 12.4 0.3 0.16 11.6 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DLIC PF05783.11 gi|347522929|ref|YP_004780499.1| - 0.09 11.6 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.6 gi|347522929|ref|YP_004780499.1| - 0.11 12.6 0.1 0.32 11.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|347522929|ref|YP_004780499.1| - 0.12 12.4 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|347522929|ref|YP_004780499.1| - 0.22 11.1 0.0 0.38 10.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain GARS_A PF01071.19 gi|347522930|ref|YP_004780500.1| - 2.3e-37 128.7 0.0 3.1e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|347522930|ref|YP_004780500.1| - 1.7e-23 83.2 0.0 3.6e-23 82.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|347522930|ref|YP_004780500.1| - 9.9e-10 38.6 0.9 1.9e-09 37.7 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|347522930|ref|YP_004780500.1| - 0.035 14.1 0.0 0.13 12.3 0.0 1.9 1 1 0 1 1 1 0 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|347522930|ref|YP_004780500.1| - 0.04 13.5 0.1 0.077 12.6 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|347522930|ref|YP_004780500.1| - 0.13 11.8 0.5 0.33 10.5 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain MarC PF01914.17 gi|347522932|ref|YP_004780502.1| - 5.4e-45 153.3 14.5 6.7e-45 153.0 14.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein ETRAMP PF09716.10 gi|347522932|ref|YP_004780502.1| - 0.13 12.3 0.1 0.13 12.3 0.1 3.1 4 0 0 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) Defensin_like PF10868.8 gi|347522933|ref|YP_004780503.1| - 0.01 16.5 6.8 0.015 16.0 6.8 1.2 1 0 0 1 1 1 0 Cysteine-rich antifungal protein 2, defensin-like Metallophos PF00149.28 gi|347522934|ref|YP_004780504.1| - 2.7e-09 37.9 0.0 3.2e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|347522934|ref|YP_004780504.1| - 4.7e-07 30.1 0.0 2.4e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF434 PF04256.12 gi|347522935|ref|YP_004780505.1| - 4.1e-18 64.8 0.1 2e-17 62.6 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF434) DUF5616 PF18481.1 gi|347522935|ref|YP_004780505.1| - 1.8e-14 54.3 0.0 2.6e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) QRPTase_C PF01729.19 gi|347522937|ref|YP_004780507.1| - 4e-52 176.4 1.8 5.4e-52 176.0 1.8 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|347522937|ref|YP_004780507.1| - 8.1e-19 67.5 0.1 1.7e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain AAA_5 PF07728.14 gi|347522938|ref|YP_004780508.1| - 5e-07 29.8 0.0 9.7e-06 25.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|347522938|ref|YP_004780508.1| - 6.1e-06 26.7 0.0 9e-05 22.9 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|347522938|ref|YP_004780508.1| - 2.8e-05 24.6 0.2 0.00015 22.2 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_3 PF07726.11 gi|347522938|ref|YP_004780508.1| - 3.2e-05 23.8 0.0 0.0019 18.1 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|347522938|ref|YP_004780508.1| - 0.002 17.9 0.0 0.048 13.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|347522938|ref|YP_004780508.1| - 0.0035 17.6 0.0 0.011 16.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|347522938|ref|YP_004780508.1| - 0.007 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|347522938|ref|YP_004780508.1| - 0.013 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|347522938|ref|YP_004780508.1| - 0.016 15.6 0.0 0.041 14.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|347522938|ref|YP_004780508.1| - 0.025 15.1 0.0 0.38 11.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.21 gi|347522938|ref|YP_004780508.1| - 0.045 13.1 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|347522938|ref|YP_004780508.1| - 0.072 12.9 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|347522938|ref|YP_004780508.1| - 0.073 13.2 0.1 0.28 11.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|347522938|ref|YP_004780508.1| - 0.13 12.5 0.0 0.3 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|347522938|ref|YP_004780508.1| - 0.14 12.5 0.0 0.38 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|347522938|ref|YP_004780508.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2201_N PF13203.6 gi|347522939|ref|YP_004780509.1| - 5.2e-18 65.6 0.7 3.4e-16 59.7 0.7 2.3 1 1 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.9 gi|347522939|ref|YP_004780509.1| - 1.4e-16 60.8 0.0 2e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 VWA-like domain (DUF2201) Peptidase_M61_N PF17899.1 gi|347522939|ref|YP_004780509.1| - 0.14 12.2 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase M61 N-terminal domain AA_kinase PF00696.28 gi|347522940|ref|YP_004780510.1| - 4.4e-42 144.3 3.3 5e-42 144.1 3.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family AAA PF00004.29 gi|347522941|ref|YP_004780511.1| - 6e-100 330.9 0.0 1.6e-50 170.9 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|347522941|ref|YP_004780511.1| - 3.3e-38 129.2 0.1 1.1e-18 66.7 0.0 3.0 3 0 0 3 3 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|347522941|ref|YP_004780511.1| - 1.4e-31 108.5 0.5 6.5e-31 106.4 0.5 2.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.17 gi|347522941|ref|YP_004780511.1| - 5.6e-19 67.7 2.3 3e-18 65.3 0.8 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|347522941|ref|YP_004780511.1| - 2.5e-16 60.3 0.0 1.9e-08 34.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|347522941|ref|YP_004780511.1| - 5e-16 58.9 0.0 1.8e-08 34.3 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|347522941|ref|YP_004780511.1| - 7.5e-14 52.5 0.3 1.8e-06 28.4 0.0 3.7 2 1 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|347522941|ref|YP_004780511.1| - 5.8e-11 42.5 1.0 0.00015 21.8 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|347522941|ref|YP_004780511.1| - 6.5e-11 42.4 0.0 2.2e-05 24.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|347522941|ref|YP_004780511.1| - 6.8e-11 42.6 0.4 0.0011 19.2 0.0 4.1 2 2 0 3 3 3 2 AAA domain TIP49 PF06068.13 gi|347522941|ref|YP_004780511.1| - 5.4e-10 39.0 0.2 0.00075 18.8 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|347522941|ref|YP_004780511.1| - 1.1e-09 38.6 0.0 0.00036 20.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|347522941|ref|YP_004780511.1| - 1.7e-09 37.5 0.1 1.8e-05 24.7 0.0 3.0 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|347522941|ref|YP_004780511.1| - 6.4e-09 36.4 0.0 0.00097 19.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|347522941|ref|YP_004780511.1| - 5.4e-08 32.8 0.0 0.0097 15.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|347522941|ref|YP_004780511.1| - 4.5e-07 30.2 0.0 0.004 17.5 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|347522941|ref|YP_004780511.1| - 1.5e-06 28.1 0.0 0.02 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|347522941|ref|YP_004780511.1| - 3e-06 26.7 1.0 0.043 13.2 0.1 2.7 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|347522941|ref|YP_004780511.1| - 5.1e-06 26.8 0.0 0.01 16.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|347522941|ref|YP_004780511.1| - 7.3e-06 26.1 0.1 0.0046 16.9 0.0 3.1 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|347522941|ref|YP_004780511.1| - 9.6e-06 25.6 0.0 0.051 13.6 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|347522941|ref|YP_004780511.1| - 1.4e-05 24.8 4.5 0.79 9.3 0.3 4.5 3 2 1 4 4 4 2 AAA domain AAA_3 PF07726.11 gi|347522941|ref|YP_004780511.1| - 2.5e-05 24.1 0.0 0.11 12.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|347522941|ref|YP_004780511.1| - 6.5e-05 22.9 0.0 0.0092 15.8 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein Sigma54_activat PF00158.26 gi|347522941|ref|YP_004780511.1| - 0.00022 21.0 0.0 0.87 9.3 0.0 3.5 2 1 0 2 2 2 1 Sigma-54 interaction domain ABC_tran PF00005.27 gi|347522941|ref|YP_004780511.1| - 0.00029 21.3 0.0 0.83 10.2 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Zeta_toxin PF06414.12 gi|347522941|ref|YP_004780511.1| - 0.00032 20.0 0.1 0.81 8.9 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin DUF815 PF05673.13 gi|347522941|ref|YP_004780511.1| - 0.00048 19.4 0.0 0.65 9.1 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|347522941|ref|YP_004780511.1| - 0.00071 19.5 2.0 0.44 10.4 0.1 3.6 4 0 0 4 4 3 1 NACHT domain AAA_7 PF12775.7 gi|347522941|ref|YP_004780511.1| - 0.00072 19.1 0.0 0.7 9.4 0.0 2.7 2 1 0 2 2 2 1 P-loop containing dynein motor region AAA_17 PF13207.6 gi|347522941|ref|YP_004780511.1| - 0.00077 19.9 0.0 0.79 10.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|347522941|ref|YP_004780511.1| - 0.0013 18.2 0.4 3.2 7.0 0.0 3.4 2 1 0 3 3 3 1 KaiC Rad17 PF03215.15 gi|347522941|ref|YP_004780511.1| - 0.0045 16.9 0.0 1.4 8.8 0.0 2.5 2 1 0 2 2 2 1 Rad17 P-loop domain NB-ARC PF00931.22 gi|347522941|ref|YP_004780511.1| - 0.0047 16.2 0.0 1.8 7.7 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain NTPase_1 PF03266.15 gi|347522941|ref|YP_004780511.1| - 0.0051 16.7 3.3 8.3 6.3 0.0 4.4 3 1 1 4 4 4 0 NTPase Parvo_NS1 PF01057.17 gi|347522941|ref|YP_004780511.1| - 0.014 14.5 0.1 0.47 9.5 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AFG1_ATPase PF03969.16 gi|347522941|ref|YP_004780511.1| - 0.019 13.9 0.0 3.6 6.4 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase PhoH PF02562.16 gi|347522941|ref|YP_004780511.1| - 0.019 14.4 0.9 3.4 7.1 0.1 2.6 2 0 0 2 2 2 0 PhoH-like protein DUF1905 PF08922.11 gi|347522941|ref|YP_004780511.1| - 0.029 14.4 1.4 0.41 10.7 0.0 3.2 4 0 0 4 4 3 0 Domain of unknown function (DUF1905) UFD1 PF03152.14 gi|347522941|ref|YP_004780511.1| - 0.039 13.4 0.0 0.091 12.2 0.0 1.6 2 0 0 2 2 1 0 Ubiquitin fusion degradation protein UFD1 Molydop_binding PF01568.21 gi|347522941|ref|YP_004780511.1| - 0.047 13.7 0.1 0.16 12.0 0.1 1.9 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain MMR_HSR1 PF01926.23 gi|347522941|ref|YP_004780511.1| - 0.048 13.7 0.0 4.2 7.5 0.0 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|347522941|ref|YP_004780511.1| - 0.073 13.4 0.7 25 5.2 0.0 3.0 2 1 0 3 3 3 0 AAA domain SKI PF01202.22 gi|347522941|ref|YP_004780511.1| - 0.075 13.2 0.0 4.5 7.4 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase Sigma54_activ_2 PF14532.6 gi|347522941|ref|YP_004780511.1| - 0.082 13.0 0.0 5.1 7.2 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain Guanylate_kin PF00625.21 gi|347522941|ref|YP_004780511.1| - 0.091 12.4 0.6 35 4.0 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase TniB PF05621.11 gi|347522941|ref|YP_004780511.1| - 0.11 11.8 0.0 18 4.7 0.0 3.3 4 0 0 4 4 3 0 Bacterial TniB protein DUF2075 PF09848.9 gi|347522941|ref|YP_004780511.1| - 0.13 11.4 0.0 2 7.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PduV-EutP PF10662.9 gi|347522941|ref|YP_004780511.1| - 0.19 11.5 0.0 10 5.9 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|347522941|ref|YP_004780511.1| - 0.21 11.8 0.0 26 5.1 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_30 PF13604.6 gi|347522941|ref|YP_004780511.1| - 0.22 11.2 0.6 19 4.9 0.0 2.8 3 0 0 3 3 2 0 AAA domain IPT PF01745.16 gi|347522941|ref|YP_004780511.1| - 0.23 10.8 0.3 14 5.0 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Viral_helicase1 PF01443.18 gi|347522941|ref|YP_004780511.1| - 0.24 11.1 0.0 9.5 5.9 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase EpmC PF04315.12 gi|347522943|ref|YP_004780513.1| - 0.071 12.8 1.2 0.093 12.4 1.2 1.1 1 0 0 1 1 1 0 Elongation factor P hydroxylase PaREP1 PF05942.11 gi|347522945|ref|YP_004780515.1| - 5.9e-24 84.2 5.1 8.2e-24 83.7 5.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|347522945|ref|YP_004780515.1| - 0.00022 21.4 0.0 0.00034 20.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) HEPN PF05168.14 gi|347522945|ref|YP_004780515.1| - 0.0068 16.5 2.5 0.027 14.6 2.5 1.8 1 1 0 1 1 1 1 HEPN domain DUF1771 PF08590.10 gi|347522945|ref|YP_004780515.1| - 0.22 11.9 5.9 0.096 13.1 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Exonuc_VII_S PF02609.16 gi|347522945|ref|YP_004780515.1| - 0.36 10.9 2.6 9.5 6.4 0.1 2.6 2 0 0 2 2 2 0 Exonuclease VII small subunit SSF PF00474.17 gi|347522946|ref|YP_004780516.1| - 6.4e-23 81.3 29.4 1.8e-22 79.8 29.5 1.8 1 1 0 1 1 1 1 Sodium:solute symporter family RibD_C PF01872.17 gi|347522948|ref|YP_004780518.1| - 3.6e-38 131.4 0.0 4.1e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain LigB PF02900.18 gi|347522948|ref|YP_004780518.1| - 0.0032 16.6 0.0 0.0047 16.0 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase B12-binding PF02310.19 gi|347522948|ref|YP_004780518.1| - 0.14 12.2 1.0 0.28 11.2 0.3 1.9 2 1 0 2 2 2 0 B12 binding domain TusA PF01206.17 gi|347522949|ref|YP_004780519.1| - 0.043 13.6 0.1 0.057 13.3 0.1 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA Thioredoxin_3 PF13192.6 gi|347522950|ref|YP_004780520.1| - 1.1e-07 31.8 0.2 2.5e-07 30.6 0.1 1.7 2 0 0 2 2 2 1 Thioredoxin domain Cytochrom_C_asm PF01578.20 gi|347522951|ref|YP_004780521.1| - 1.3e-16 61.0 17.1 1.3e-16 61.0 17.1 4.7 3 2 0 3 3 3 1 Cytochrome C assembly protein CcmF_C PF16327.5 gi|347522951|ref|YP_004780521.1| - 1.6e-07 31.0 5.5 1.6e-07 31.0 5.5 3.9 4 1 0 5 5 5 2 Cytochrome c-type biogenesis protein CcmF C-terminal DUF2593 PF10767.9 gi|347522951|ref|YP_004780521.1| - 0.0065 16.6 1.3 0.029 14.5 1.3 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2593) YvrJ PF12841.7 gi|347522951|ref|YP_004780521.1| - 6.8 6.3 7.1 4.6 6.8 0.1 3.1 3 0 0 3 3 3 0 YvrJ protein family DEAD PF00270.29 gi|347522952|ref|YP_004780522.1| - 1.2e-16 61.0 0.0 2e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|347522952|ref|YP_004780522.1| - 9e-15 55.0 0.2 5.3e-14 52.5 0.1 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_33 PF13671.6 gi|347522952|ref|YP_004780522.1| - 0.0017 18.6 1.1 0.087 13.0 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|347522952|ref|YP_004780522.1| - 0.0037 17.6 0.0 0.024 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|347522952|ref|YP_004780522.1| - 0.011 15.5 1.4 0.19 11.5 0.0 3.0 3 0 0 3 3 3 0 AAA domain ResIII PF04851.15 gi|347522952|ref|YP_004780522.1| - 0.024 14.7 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Alkyl_sulf_dimr PF14863.6 gi|347522952|ref|YP_004780522.1| - 0.75 10.2 2.1 0.86 10.1 0.6 1.8 2 0 0 2 2 2 0 Alkyl sulfatase dimerisation Peptidase_M22 PF00814.25 gi|347522953|ref|YP_004780523.1| - 4.2e-74 249.7 0.1 4.9e-74 249.4 0.1 1.0 1 0 0 1 1 1 1 Glycoprotease family ketoacyl-synt PF00109.26 gi|347522953|ref|YP_004780523.1| - 0.0084 15.7 0.0 0.023 14.3 0.0 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain DUF348 PF03990.14 gi|347522953|ref|YP_004780523.1| - 0.16 11.7 0.3 0.41 10.4 0.1 1.8 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Methyltransf_21 PF05050.12 gi|347522954|ref|YP_004780524.1| - 3.4e-23 82.6 0.0 5.1e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|347522954|ref|YP_004780524.1| - 0.0028 17.0 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|347522954|ref|YP_004780524.1| - 0.0053 16.5 0.3 0.022 14.5 0.0 2.0 2 0 0 2 2 2 1 Met-10+ like-protein Ets PF00178.22 gi|347522954|ref|YP_004780524.1| - 0.12 12.9 0.1 0.32 11.5 0.1 1.8 1 0 0 1 1 1 0 Ets-domain Methyltransf_24 PF13578.6 gi|347522954|ref|YP_004780524.1| - 0.14 13.2 0.0 1 10.4 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Phosphodiest PF01663.22 gi|347522955|ref|YP_004780525.1| - 4.3e-57 194.3 0.1 5e-57 194.1 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|347522955|ref|YP_004780525.1| - 0.00011 21.7 0.0 0.0002 20.9 0.0 1.5 1 1 0 1 1 1 1 Sulfatase DUF229 PF02995.17 gi|347522955|ref|YP_004780525.1| - 0.053 12.1 0.0 0.075 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) His_Phos_1 PF00300.22 gi|347522955|ref|YP_004780525.1| - 0.096 12.4 0.3 0.2 11.4 0.1 1.6 2 0 0 2 2 2 0 Histidine phosphatase superfamily (branch 1) ATP-sulfurylase PF01747.17 gi|347522956|ref|YP_004780526.1| - 3.3e-88 294.7 0.0 4.7e-88 294.2 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|347522956|ref|YP_004780526.1| - 5.9e-55 185.3 0.0 8.6e-55 184.8 0.0 1.2 1 0 0 1 1 1 1 PUA-like domain RHH_3 PF12651.7 gi|347522957|ref|YP_004780527.1| - 0.0098 15.8 0.1 0.52 10.3 0.3 2.2 2 0 0 2 2 2 2 Ribbon-helix-helix domain T4_Rnl2_C PF18043.1 gi|347522957|ref|YP_004780527.1| - 0.11 12.7 0.0 0.12 12.5 0.0 1.3 1 1 0 1 1 1 0 T4 RNA ligase 2 C-terminal tRNA-synt_1b PF00579.25 gi|347522958|ref|YP_004780528.1| - 1.1e-43 149.6 0.0 2.1e-31 109.4 0.0 2.0 1 1 1 2 2 2 2 tRNA synthetases class I (W and Y) Glyco_trans_1_2 PF13524.6 gi|347522958|ref|YP_004780528.1| - 0.00012 22.4 0.0 0.11 12.8 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferases group 1 Toprim_4 PF13662.6 gi|347522959|ref|YP_004780529.1| - 6.9e-09 36.1 0.1 1.7e-08 34.8 0.1 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|347522959|ref|YP_004780529.1| - 0.00026 21.3 0.0 0.00064 20.1 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Pex14_N PF04695.13 gi|347522959|ref|YP_004780529.1| - 0.014 16.1 18.4 0.022 15.4 18.4 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Toprim PF01751.22 gi|347522959|ref|YP_004780529.1| - 0.091 13.0 0.3 0.3 11.4 0.1 2.1 2 1 0 2 2 2 0 Toprim domain Ndc1_Nup PF09531.10 gi|347522959|ref|YP_004780529.1| - 0.16 10.6 5.3 0.21 10.2 5.3 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup TFIIA PF03153.13 gi|347522959|ref|YP_004780529.1| - 2 8.3 6.7 2.6 7.9 6.7 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF3322 PF11795.8 gi|347522959|ref|YP_004780529.1| - 4.8 7.1 7.8 0.14 12.2 0.4 2.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) Mut7-C PF01927.16 gi|347522960|ref|YP_004780530.1| - 2.3e-47 160.8 0.0 2.9e-47 160.4 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|347522960|ref|YP_004780530.1| - 9.9e-06 25.2 0.0 1.6e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) zf_CopZ PF18423.1 gi|347522960|ref|YP_004780530.1| - 0.0011 18.9 0.2 0.0019 18.1 0.2 1.4 1 0 0 1 1 1 1 Zinc binding domain zf-IS66 PF13005.7 gi|347522960|ref|YP_004780530.1| - 0.01 16.2 0.8 0.71 10.3 0.1 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PIN_9 PF18477.1 gi|347522960|ref|YP_004780530.1| - 0.011 16.1 0.0 0.02 15.2 0.0 1.5 1 0 0 1 1 1 0 PIN like domain PhnA_Zn_Ribbon PF08274.12 gi|347522960|ref|YP_004780530.1| - 0.013 15.4 0.9 3.7 7.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF188 PF02639.14 gi|347522960|ref|YP_004780530.1| - 0.013 15.1 0.6 0.039 13.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 ADK_lid PF05191.14 gi|347522960|ref|YP_004780530.1| - 0.045 13.7 0.4 0.68 10.0 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF4428 PF14471.6 gi|347522960|ref|YP_004780530.1| - 0.097 12.6 0.0 0.97 9.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DZR PF12773.7 gi|347522960|ref|YP_004780530.1| - 0.097 12.7 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon PIN_5 PF08745.11 gi|347522960|ref|YP_004780530.1| - 0.13 11.6 0.6 0.2 11.1 0.0 1.5 2 0 0 2 2 2 0 PINc domain ribonuclease Zn_ribbon_recom PF13408.6 gi|347522960|ref|YP_004780530.1| - 0.29 11.7 2.1 29 5.3 0.3 2.7 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain Ogr_Delta PF04606.12 gi|347522960|ref|YP_004780530.1| - 0.66 10.0 2.1 34 4.5 0.0 2.6 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.6 gi|347522960|ref|YP_004780530.1| - 1.2 9.8 8.0 16 6.3 1.0 3.2 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|347522960|ref|YP_004780530.1| - 2.8 7.5 4.8 7.1 6.2 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF553 PF04473.12 gi|347522961|ref|YP_004780531.1| - 5.3e-15 55.3 0.0 1.5e-14 53.8 0.0 1.7 1 1 0 1 1 1 1 Transglutaminase-like domain LMBR1 PF04791.16 gi|347522961|ref|YP_004780531.1| - 0.014 14.3 0.1 0.019 13.9 0.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2833 PF11090.8 gi|347522961|ref|YP_004780531.1| - 0.14 12.6 0.1 0.35 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2833) Lon_C PF05362.13 gi|347522962|ref|YP_004780532.1| - 7.2e-12 45.3 0.5 1.5e-11 44.2 0.5 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|347522962|ref|YP_004780532.1| - 0.062 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase RhoGAP PF00620.27 gi|347522963|ref|YP_004780533.1| - 0.003 17.4 0.0 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 RhoGAP domain Gag_p17 PF00540.18 gi|347522963|ref|YP_004780533.1| - 0.15 12.1 0.7 0.35 10.8 0.1 1.8 1 1 1 2 2 2 0 gag gene protein p17 (matrix protein) HrpF PF06266.12 gi|347522963|ref|YP_004780533.1| - 0.18 12.1 0.0 0.79 10.1 0.0 1.9 2 0 0 2 2 2 0 HrpF protein NPCBM_assoc PF10633.9 gi|347522965|ref|YP_004780535.1| - 1.6e-15 57.1 20.3 0.0022 18.2 0.0 8.8 8 0 0 8 8 8 5 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|347522965|ref|YP_004780535.1| - 1.7e-08 34.6 0.0 0.029 14.6 0.0 4.9 4 0 0 4 4 4 3 CARDB DUF11 PF01345.18 gi|347522965|ref|YP_004780535.1| - 0.084 13.2 34.4 5 7.5 0.0 9.0 9 1 0 9 9 9 0 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|347522965|ref|YP_004780535.1| - 0.33 10.3 1.6 1.2 8.5 0.0 2.6 3 0 0 3 3 3 0 Translocon-associated protein beta (TRAPB) MacB_PCD PF12704.7 gi|347522966|ref|YP_004780536.1| - 1.5e-16 61.3 3.7 1.5e-16 61.3 3.7 1.9 1 1 1 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|347522966|ref|YP_004780536.1| - 5.7e-14 52.4 2.5 5.7e-14 52.4 2.5 3.1 3 0 0 3 3 3 1 FtsX-like permease family NapD PF03927.13 gi|347522966|ref|YP_004780536.1| - 0.0015 18.6 0.0 0.013 15.5 0.0 2.4 2 0 0 2 2 2 1 NapD protein ABC_tran PF00005.27 gi|347522967|ref|YP_004780537.1| - 3.2e-31 108.7 0.0 4.5e-31 108.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347522967|ref|YP_004780537.1| - 8.4e-06 25.8 0.0 0.09 12.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347522967|ref|YP_004780537.1| - 0.0001 21.8 0.0 0.13 11.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|347522967|ref|YP_004780537.1| - 0.0008 19.1 0.4 0.0015 18.2 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|347522967|ref|YP_004780537.1| - 0.0025 18.1 0.2 0.006 16.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347522967|ref|YP_004780537.1| - 0.0032 17.9 0.3 0.0094 16.3 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|347522967|ref|YP_004780537.1| - 0.012 15.5 0.2 0.027 14.4 0.2 1.6 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|347522967|ref|YP_004780537.1| - 0.035 13.2 0.7 0.061 12.4 0.7 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|347522967|ref|YP_004780537.1| - 0.048 13.2 0.2 0.12 12.0 0.1 1.7 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|347522967|ref|YP_004780537.1| - 0.064 13.0 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347522967|ref|YP_004780537.1| - 0.068 13.1 0.1 0.28 11.1 0.1 1.9 2 0 0 2 2 2 0 NACHT domain T4SS-DNA_transf PF02534.14 gi|347522967|ref|YP_004780537.1| - 0.076 11.8 0.1 0.1 11.4 0.1 1.1 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_23 PF13476.6 gi|347522967|ref|YP_004780537.1| - 0.096 13.2 0.3 0.14 12.7 0.3 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|347522967|ref|YP_004780537.1| - 0.11 12.1 0.1 0.21 11.1 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|347522967|ref|YP_004780537.1| - 0.15 12.6 0.3 0.42 11.2 0.3 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|347522967|ref|YP_004780537.1| - 0.15 11.8 0.3 0.33 10.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|347522967|ref|YP_004780537.1| - 0.17 12.1 0.0 1.9 8.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|347522967|ref|YP_004780537.1| - 0.2 11.8 0.9 0.46 10.6 0.9 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|347522967|ref|YP_004780537.1| - 0.27 10.4 1.0 0.5 9.5 0.2 1.7 2 0 0 2 2 2 0 NB-ARC domain PIN PF01850.21 gi|347522971|ref|YP_004780541.1| - 1e-08 35.7 0.9 1.2e-08 35.5 0.9 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|347522971|ref|YP_004780541.1| - 0.16 12.8 0.2 0.2 12.4 0.2 1.3 1 0 0 1 1 1 0 PIN domain Peripla_BP_2 PF01497.18 gi|347522975|ref|YP_004780545.1| - 5.2e-52 176.8 0.0 2.9e-27 95.8 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein Peripla_BP_4 PF13407.6 gi|347522975|ref|YP_004780545.1| - 2.7e-07 30.4 0.0 0.00052 19.7 0.0 2.4 2 0 0 2 2 2 2 Periplasmic binding protein domain FecCD PF01032.18 gi|347522976|ref|YP_004780546.1| - 9.1e-87 291.0 31.6 1.1e-86 290.7 31.6 1.0 1 0 0 1 1 1 1 FecCD transport family RES PF08808.11 gi|347522976|ref|YP_004780546.1| - 0.0071 16.2 0.1 0.016 15.1 0.1 1.6 1 0 0 1 1 1 1 RES domain BPD_transp_2 PF02653.16 gi|347522976|ref|YP_004780546.1| - 0.053 12.7 28.6 0.088 12.0 27.6 2.0 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|347522977|ref|YP_004780547.1| - 1e-31 110.3 0.0 1.4e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347522977|ref|YP_004780547.1| - 3.1e-13 50.2 1.9 3.7e-06 27.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347522977|ref|YP_004780547.1| - 3.9e-09 36.3 0.1 7.2e-05 22.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|347522977|ref|YP_004780547.1| - 3.4e-05 23.6 0.2 8.5e-05 22.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|347522977|ref|YP_004780547.1| - 9.3e-05 23.0 0.0 0.00015 22.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|347522977|ref|YP_004780547.1| - 9.6e-05 22.1 0.2 0.00061 19.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|347522977|ref|YP_004780547.1| - 0.0007 20.0 0.9 0.0021 18.5 0.9 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|347522977|ref|YP_004780547.1| - 0.00086 19.0 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|347522977|ref|YP_004780547.1| - 0.00096 18.1 0.5 0.73 8.6 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|347522977|ref|YP_004780547.1| - 0.0013 18.5 0.0 0.053 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|347522977|ref|YP_004780547.1| - 0.0042 17.0 0.0 0.0074 16.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase cobW PF02492.19 gi|347522977|ref|YP_004780547.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|347522977|ref|YP_004780547.1| - 0.02 15.2 1.3 0.13 12.6 1.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|347522977|ref|YP_004780547.1| - 0.027 14.7 0.0 0.063 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|347522977|ref|YP_004780547.1| - 0.03 13.0 0.0 0.046 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|347522977|ref|YP_004780547.1| - 0.034 14.3 0.2 0.41 10.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|347522977|ref|YP_004780547.1| - 0.039 14.2 0.1 0.4 11.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|347522977|ref|YP_004780547.1| - 0.045 13.8 0.1 0.19 11.9 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|347522977|ref|YP_004780547.1| - 0.051 14.1 0.0 0.61 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|347522977|ref|YP_004780547.1| - 0.068 13.1 0.1 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|347522977|ref|YP_004780547.1| - 0.07 13.0 0.0 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain AAA PF00004.29 gi|347522977|ref|YP_004780547.1| - 0.073 13.5 0.0 0.68 10.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|347522977|ref|YP_004780547.1| - 0.14 11.7 0.7 0.74 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|347522977|ref|YP_004780547.1| - 0.21 11.5 0.0 0.47 10.3 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea DSPc PF00782.20 gi|347522979|ref|YP_004780549.1| - 0.0002 21.1 0.0 0.00024 20.9 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|347522979|ref|YP_004780549.1| - 0.016 14.8 0.1 0.018 14.6 0.1 1.2 1 0 0 1 1 1 0 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.6 gi|347522979|ref|YP_004780549.1| - 0.14 12.1 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Tyrosine phosphatase family Penicillinase_R PF03965.16 gi|347522981|ref|YP_004780551.1| - 0.00015 22.1 0.1 0.00036 20.9 0.1 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|347522981|ref|YP_004780551.1| - 0.00018 21.3 5.7 0.0028 17.4 0.6 3.7 3 1 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|347522981|ref|YP_004780551.1| - 0.0003 20.6 0.5 0.00077 19.3 0.3 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|347522981|ref|YP_004780551.1| - 0.00031 20.6 0.1 0.0006 19.7 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|347522981|ref|YP_004780551.1| - 0.0036 17.2 0.1 0.01 15.8 0.1 1.8 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|347522981|ref|YP_004780551.1| - 0.0057 17.1 0.2 0.054 14.0 0.3 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|347522981|ref|YP_004780551.1| - 0.012 15.7 0.6 0.012 15.7 0.6 2.5 2 1 1 3 3 3 0 Helix-turn-helix domain TetR_C_11 PF16859.5 gi|347522981|ref|YP_004780551.1| - 0.025 14.9 0.9 8.8 6.7 0.1 2.9 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Arg_repressor PF01316.21 gi|347522981|ref|YP_004780551.1| - 0.031 14.0 0.1 0.064 13.0 0.1 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain FUR PF01475.19 gi|347522981|ref|YP_004780551.1| - 0.041 14.0 0.1 0.066 13.4 0.1 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family FliX PF10768.9 gi|347522981|ref|YP_004780551.1| - 0.078 13.5 0.5 1.2 9.7 0.2 2.1 2 0 0 2 2 2 0 Class II flagellar assembly regulator HTH_32 PF13565.6 gi|347522981|ref|YP_004780551.1| - 0.11 13.1 0.2 0.91 10.2 0.2 2.2 1 1 0 1 1 1 0 Homeodomain-like domain DevR PF01905.16 gi|347522983|ref|YP_004780553.1| - 2.2e-65 220.4 0.0 2.9e-65 220.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF4785 PF16024.5 gi|347522983|ref|YP_004780553.1| - 0.13 11.0 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4785) Cas_Cas5d PF09704.10 gi|347522984|ref|YP_004780554.1| - 0.0015 18.5 0.1 0.0032 17.4 0.1 1.5 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Helicase_C PF00271.31 gi|347522986|ref|YP_004780556.1| - 1.8e-09 37.9 0.1 4.4e-09 36.7 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|347522986|ref|YP_004780556.1| - 1.8e-05 24.5 0.0 9.4e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|347522986|ref|YP_004780556.1| - 0.002 18.1 0.0 0.0036 17.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|347522986|ref|YP_004780556.1| - 0.0062 16.8 0.0 0.21 11.9 0.0 3.1 3 1 0 3 3 3 1 AAA domain HD PF01966.22 gi|347522987|ref|YP_004780557.1| - 3.5e-05 24.0 0.0 0.00011 22.5 0.0 1.9 1 1 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|347522987|ref|YP_004780557.1| - 0.033 14.3 1.4 0.13 12.3 1.4 2.1 1 1 0 1 1 1 0 HD domain DUF1640 PF07798.11 gi|347522988|ref|YP_004780558.1| - 0.00043 20.4 1.8 0.00058 20.0 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1640) CdvA PF18822.1 gi|347522988|ref|YP_004780558.1| - 0.00089 19.1 2.5 0.0014 18.5 2.5 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Fzo_mitofusin PF04799.13 gi|347522988|ref|YP_004780558.1| - 0.0025 17.4 0.7 0.0035 16.9 0.7 1.2 1 0 0 1 1 1 1 fzo-like conserved region Baculo_PEP_C PF04513.12 gi|347522988|ref|YP_004780558.1| - 0.0092 16.0 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1676 PF07898.13 gi|347522988|ref|YP_004780558.1| - 0.031 14.3 2.3 0.038 14.0 2.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) DUF4795 PF16043.5 gi|347522988|ref|YP_004780558.1| - 0.042 13.5 4.7 0.042 13.5 4.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Prominin PF05478.11 gi|347522988|ref|YP_004780558.1| - 0.044 11.8 0.1 0.045 11.7 0.1 1.2 1 0 0 1 1 1 0 Prominin Phage_Mu_Gam PF07352.12 gi|347522988|ref|YP_004780558.1| - 0.046 13.6 1.8 0.065 13.1 1.8 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein EMP24_GP25L PF01105.24 gi|347522988|ref|YP_004780558.1| - 0.052 13.5 0.2 0.061 13.3 0.2 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF1664 PF07889.12 gi|347522988|ref|YP_004780558.1| - 0.068 13.2 0.6 0.11 12.6 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2951 PF11166.8 gi|347522988|ref|YP_004780558.1| - 0.11 12.7 4.3 0.19 12.0 4.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2951) PI3K_P85_iSH2 PF16454.5 gi|347522988|ref|YP_004780558.1| - 0.12 12.0 6.5 0.17 11.5 6.5 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2207 PF09972.9 gi|347522988|ref|YP_004780558.1| - 0.13 11.0 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AAA_9 PF12781.7 gi|347522988|ref|YP_004780558.1| - 0.22 10.6 3.1 0.27 10.3 3.1 1.2 1 0 0 1 1 1 0 ATP-binding dynein motor region Hydantoinase_B PF02538.14 gi|347522988|ref|YP_004780558.1| - 0.29 9.5 0.6 0.31 9.4 0.6 1.0 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase FlaC_arch PF05377.11 gi|347522988|ref|YP_004780558.1| - 0.34 11.3 3.1 0.81 10.1 1.8 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF1451 PF07295.11 gi|347522988|ref|YP_004780558.1| - 0.5 10.4 4.1 0.45 10.6 2.8 1.5 1 1 1 2 2 2 0 Zinc-ribbon containing domain DUF2721 PF11026.8 gi|347522988|ref|YP_004780558.1| - 1.3 8.9 5.3 0.29 11.0 2.0 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) DUF883 PF05957.13 gi|347522988|ref|YP_004780558.1| - 1.6 9.4 6.9 1.3 9.7 5.3 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Herpes_UL25 PF01499.16 gi|347522988|ref|YP_004780558.1| - 1.8 7.0 5.9 2.1 6.7 5.9 1.0 1 0 0 1 1 1 0 Herpesvirus UL25 family GrpE PF01025.19 gi|347522988|ref|YP_004780558.1| - 2.7 7.6 7.1 2 8.1 5.8 1.4 1 1 0 1 1 1 0 GrpE Tsc35 PF15079.6 gi|347522988|ref|YP_004780558.1| - 4.3 6.9 9.6 7.6 6.1 9.6 1.5 1 1 0 1 1 1 0 Testis-specific protein 35 SlyX PF04102.12 gi|347522988|ref|YP_004780558.1| - 8.7 7.0 11.1 23 5.7 0.9 2.7 2 1 1 3 3 3 0 SlyX RAMPs PF03787.15 gi|347522989|ref|YP_004780559.1| - 0.04 13.9 0.2 0.045 13.8 0.2 1.1 1 0 0 1 1 1 0 RAMP superfamily DUF2283 PF10049.9 gi|347522990|ref|YP_004780560.1| - 1.3e-14 54.1 2.9 2.2e-14 53.4 2.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF5335 PF17269.2 gi|347522990|ref|YP_004780560.1| - 0.086 12.7 0.3 0.099 12.5 0.3 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5335) DUF2914 PF11141.8 gi|347522991|ref|YP_004780561.1| - 0.036 13.8 0.2 0.069 12.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2914) DUF1794 PF08768.11 gi|347522991|ref|YP_004780561.1| - 0.16 11.9 0.1 0.17 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1794) DSPc PF00782.20 gi|347522994|ref|YP_004780564.1| - 3.9e-05 23.5 0.0 5e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|347522994|ref|YP_004780564.1| - 0.00072 19.2 0.1 0.00088 18.9 0.1 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase HCV_NS5a_1a PF08300.13 gi|347522994|ref|YP_004780564.1| - 0.0019 18.3 1.2 0.005 16.9 1.2 1.7 1 0 0 1 1 1 1 Hepatitis C virus non-structural 5a zinc finger domain LPAM_2 PF13627.6 gi|347522994|ref|YP_004780564.1| - 9.9 6.2 7.2 20 5.2 0.2 2.5 2 0 0 2 2 2 0 Prokaryotic lipoprotein-attachment site RAMPs PF03787.15 gi|347522997|ref|YP_004780567.1| - 1.7e-05 25.0 0.0 4.3e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 RAMP superfamily DUF4192 PF13830.6 gi|347522997|ref|YP_004780567.1| - 1.1 9.2 7.2 21 5.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) RAMPs PF03787.15 gi|347522999|ref|YP_004780569.1| - 1.5e-13 51.3 0.0 2.5e-13 50.6 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily Indigoidine_A PF04227.12 gi|347522999|ref|YP_004780569.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Indigoidine synthase A like protein DUF3692 PF12469.8 gi|347523000|ref|YP_004780570.1| - 2.3e-33 114.7 0.1 5.2e-33 113.6 0.1 1.7 1 0 0 1 1 1 1 CRISPR-associated protein DUF104 PF01954.16 gi|347523003|ref|YP_004780573.1| - 2.3e-21 76.0 2.5 2.8e-21 75.7 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.21 gi|347523004|ref|YP_004780574.1| - 2.8e-19 69.8 1.0 4.3e-19 69.2 1.0 1.3 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|347523004|ref|YP_004780574.1| - 0.0029 18.1 0.0 0.0044 17.5 0.0 1.4 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|347523004|ref|YP_004780574.1| - 0.011 16.5 0.1 0.02 15.7 0.1 1.3 1 1 0 1 1 1 0 PIN domain ATPase_2 PF01637.18 gi|347523005|ref|YP_004780575.1| - 0.00079 19.4 0.0 0.00091 19.2 0.0 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347523005|ref|YP_004780575.1| - 0.07 13.5 0.0 0.073 13.5 0.0 1.0 1 0 0 1 1 1 0 AAA ATPase domain DUF86 PF01934.17 gi|347523006|ref|YP_004780576.1| - 5.3e-18 65.0 0.1 6.1e-18 64.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 HNH_repeat PF18780.1 gi|347523006|ref|YP_004780576.1| - 0.001 18.8 0.1 0.014 15.2 0.0 2.7 1 1 1 2 2 2 1 Homing endonuclease repeat DUF4145 PF13643.6 gi|347523006|ref|YP_004780576.1| - 0.0042 17.2 0.0 0.0058 16.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) HTH_24 PF13412.6 gi|347523006|ref|YP_004780576.1| - 0.0052 16.3 0.5 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|347523006|ref|YP_004780576.1| - 0.0075 16.2 0.5 0.014 15.3 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|347523006|ref|YP_004780576.1| - 0.017 15.2 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF294_C PF10335.9 gi|347523006|ref|YP_004780576.1| - 0.02 14.7 0.3 0.031 14.1 0.3 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase substrate binding domain CtsR_C PF17727.1 gi|347523006|ref|YP_004780576.1| - 0.032 14.4 0.2 0.089 12.9 0.1 1.8 1 1 1 2 2 2 0 CtsR C-terminal dimerization domain GntR PF00392.21 gi|347523006|ref|YP_004780576.1| - 0.039 13.6 1.9 0.065 12.9 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|347523006|ref|YP_004780576.1| - 0.18 11.6 0.1 0.18 11.6 0.1 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Polbeta PF18765.1 gi|347523007|ref|YP_004780577.1| - 1.3e-05 25.1 0.0 1.9e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HEPN PF05168.14 gi|347523009|ref|YP_004780579.1| - 1.3e-25 89.8 2.0 1.6e-25 89.5 2.0 1.1 1 0 0 1 1 1 1 HEPN domain PHY PF00360.20 gi|347523009|ref|YP_004780579.1| - 0.0017 17.7 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 Phytochrome region HEPN_AbiU2 PF18734.1 gi|347523009|ref|YP_004780579.1| - 0.083 12.4 0.1 1.7 8.1 0.1 2.5 1 1 1 2 2 2 0 AbiU2 NTP_transf_2 PF01909.23 gi|347523010|ref|YP_004780580.1| - 1.7e-11 44.3 0.0 2.2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523010|ref|YP_004780580.1| - 3.4e-05 23.8 0.0 4.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|347523010|ref|YP_004780580.1| - 0.00083 19.5 0.0 0.0012 19.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|347523010|ref|YP_004780580.1| - 0.021 14.6 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 CRISPR_Cas6 PF10040.9 gi|347523011|ref|YP_004780581.1| - 1.4e-05 25.6 0.0 2.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 AAA_assoc_2 PF16193.5 gi|347523011|ref|YP_004780581.1| - 0.034 14.5 0.0 0.062 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA C-terminal domain TPR_14 PF13428.6 gi|347523011|ref|YP_004780581.1| - 0.22 12.4 0.5 0.22 12.4 0.5 2.1 2 1 1 3 3 3 0 Tetratricopeptide repeat PaREP1 PF05942.11 gi|347523012|ref|YP_004780582.1| - 5.8e-22 77.8 2.4 8.5e-22 77.3 2.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|347523012|ref|YP_004780582.1| - 0.012 15.7 1.2 0.049 13.8 1.2 1.9 1 1 0 1 1 1 0 HEPN domain ATPase_2 PF01637.18 gi|347523013|ref|YP_004780583.1| - 7.2e-51 173.3 0.0 1e-50 172.8 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347523013|ref|YP_004780583.1| - 6e-05 23.5 1.3 0.00027 21.4 0.7 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|347523013|ref|YP_004780583.1| - 0.0022 17.7 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347523013|ref|YP_004780583.1| - 0.0043 17.3 0.0 0.0076 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347523013|ref|YP_004780583.1| - 0.0058 17.1 0.0 0.012 16.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|347523013|ref|YP_004780583.1| - 0.018 15.0 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|347523013|ref|YP_004780583.1| - 0.019 14.9 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.6 gi|347523013|ref|YP_004780583.1| - 0.034 14.2 0.0 0.068 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|347523013|ref|YP_004780583.1| - 0.042 14.1 2.0 0.1 12.9 0.0 2.4 3 0 0 3 3 2 0 AAA domain MobB PF03205.14 gi|347523013|ref|YP_004780583.1| - 0.043 13.7 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|347523013|ref|YP_004780583.1| - 0.046 13.5 0.0 0.081 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|347523013|ref|YP_004780583.1| - 0.047 13.2 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|347523013|ref|YP_004780583.1| - 0.065 13.2 0.0 0.14 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|347523013|ref|YP_004780583.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|347523013|ref|YP_004780583.1| - 0.086 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain NB-ARC PF00931.22 gi|347523013|ref|YP_004780583.1| - 0.1 11.8 0.0 0.25 10.5 0.0 1.8 1 1 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|347523013|ref|YP_004780583.1| - 0.1 12.8 0.0 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|347523013|ref|YP_004780583.1| - 0.13 12.6 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Glyco_trans_4_3 PF12000.8 gi|347523013|ref|YP_004780583.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 4 group HisG_C PF08029.11 gi|347523013|ref|YP_004780583.1| - 0.17 12.1 0.0 0.41 10.8 0.0 1.6 1 0 0 1 1 1 0 HisG, C-terminal domain CRISPR_Cas6 PF10040.9 gi|347523014|ref|YP_004780584.1| - 6.7e-10 39.5 0.0 1.3e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 NTP_transf_2 PF01909.23 gi|347523015|ref|YP_004780585.1| - 1.9e-06 28.0 0.0 2.3e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523015|ref|YP_004780585.1| - 0.012 15.7 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Bac_luciferase PF00296.20 gi|347523015|ref|YP_004780585.1| - 0.045 13.2 0.4 0.058 12.8 0.4 1.1 1 0 0 1 1 1 0 Luciferase-like monooxygenase Kelch_4 PF13418.6 gi|347523015|ref|YP_004780585.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Galactose oxidase, central domain HEPN PF05168.14 gi|347523016|ref|YP_004780586.1| - 9.7e-25 87.0 0.7 1.2e-24 86.7 0.7 1.1 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|347523016|ref|YP_004780586.1| - 0.034 14.1 0.2 0.082 12.8 0.1 1.7 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family TPR_2 PF07719.17 gi|347523016|ref|YP_004780586.1| - 0.64 10.3 4.8 0.2 11.8 0.8 2.3 3 0 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|347523017|ref|YP_004780587.1| - 2.6e-10 40.4 0.0 3.3e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523017|ref|YP_004780587.1| - 1.4e-09 37.9 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|347523017|ref|YP_004780587.1| - 0.0034 17.2 0.2 0.0066 16.3 0.2 1.6 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Adenyl_cycl_N PF12633.7 gi|347523017|ref|YP_004780587.1| - 0.0072 16.2 0.0 0.011 15.7 0.0 1.4 1 1 0 1 1 1 1 Adenylate cyclase NT domain HLH PF00010.26 gi|347523017|ref|YP_004780587.1| - 0.08 12.9 0.0 0.78 9.8 0.0 2.0 1 1 0 1 1 1 0 Helix-loop-helix DNA-binding domain HEPN PF05168.14 gi|347523018|ref|YP_004780588.1| - 1.2e-31 109.3 1.3 1.4e-31 109.0 1.3 1.0 1 0 0 1 1 1 1 HEPN domain DUF1771 PF08590.10 gi|347523018|ref|YP_004780588.1| - 0.16 12.3 0.5 0.16 12.3 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) PaREP1 PF05942.11 gi|347523018|ref|YP_004780588.1| - 1.7 8.6 8.0 0.33 10.9 3.4 2.1 2 1 0 2 2 2 0 Archaeal PaREP1/PaREP8 family ATP-synt_DE PF00401.20 gi|347523018|ref|YP_004780588.1| - 9.4 6.6 20.4 3.8 7.8 7.8 2.6 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ABC_tran PF00005.27 gi|347523021|ref|YP_004780591.1| - 6.2e-19 68.9 0.0 1e-18 68.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523021|ref|YP_004780591.1| - 6.3e-11 42.6 0.0 0.00016 21.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|347523021|ref|YP_004780591.1| - 7.4e-07 28.8 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|347523021|ref|YP_004780591.1| - 0.00057 20.3 0.2 0.00076 19.9 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|347523021|ref|YP_004780591.1| - 0.0013 19.3 0.0 0.0018 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|347523021|ref|YP_004780591.1| - 0.0087 15.5 0.0 0.052 13.0 0.0 1.9 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|347523021|ref|YP_004780591.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.6 gi|347523021|ref|YP_004780591.1| - 0.014 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|347523021|ref|YP_004780591.1| - 0.021 14.4 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|347523021|ref|YP_004780591.1| - 0.028 14.6 0.1 0.045 13.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|347523021|ref|YP_004780591.1| - 0.036 13.3 0.0 0.067 12.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|347523021|ref|YP_004780591.1| - 0.049 13.9 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|347523021|ref|YP_004780591.1| - 0.057 13.1 0.0 0.067 12.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|347523021|ref|YP_004780591.1| - 0.065 13.2 0.0 0.23 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|347523021|ref|YP_004780591.1| - 0.065 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|347523021|ref|YP_004780591.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DLIC PF05783.11 gi|347523021|ref|YP_004780591.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RsgA_GTPase PF03193.16 gi|347523021|ref|YP_004780591.1| - 0.13 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|347523021|ref|YP_004780591.1| - 0.15 11.8 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|347523021|ref|YP_004780591.1| - 0.15 12.3 0.0 0.51 10.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|347523021|ref|YP_004780591.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain GPHR_N PF12537.8 gi|347523022|ref|YP_004780592.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal YqzM PF14141.6 gi|347523023|ref|YP_004780593.1| - 0.35 10.9 1.9 0.48 10.5 0.1 2.0 2 0 0 2 2 2 0 YqzM-like protein Cas_Cas02710 PF09670.10 gi|347523026|ref|YP_004780596.1| - 1.6e-05 23.9 0.0 2.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.10 gi|347523026|ref|YP_004780596.1| - 0.035 14.0 0.1 0.37 10.7 0.0 2.4 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_APE2256) DUF1887 PF09002.11 gi|347523026|ref|YP_004780596.1| - 0.14 10.8 0.0 0.29 9.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Cas_DxTHG PF09455.10 gi|347523026|ref|YP_004780596.1| - 0.23 11.0 0.0 0.61 9.6 0.0 1.6 2 0 0 2 2 2 0 CRISPR-associated (Cas) DxTHG family PIN PF01850.21 gi|347523027|ref|YP_004780597.1| - 9e-09 35.9 0.0 1.1e-08 35.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|347523028|ref|YP_004780598.1| - 2.9e-10 39.8 1.2 2.9e-10 39.8 1.2 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Molydop_binding PF01568.21 gi|347523028|ref|YP_004780598.1| - 0.0095 15.9 1.0 0.012 15.6 0.5 1.4 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain SymE_toxin PF08845.10 gi|347523028|ref|YP_004780598.1| - 0.016 15.3 0.1 0.016 15.3 0.1 2.0 3 0 0 3 3 3 0 Toxin SymE, type I toxin-antitoxin system DUF104 PF01954.16 gi|347523030|ref|YP_004780600.1| - 1.3e-07 32.0 0.1 2.1e-07 31.3 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF104 AAA_14 PF13173.6 gi|347523031|ref|YP_004780601.1| - 4.5e-06 26.7 0.0 0.0035 17.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain TetR_C_6 PF13977.6 gi|347523031|ref|YP_004780601.1| - 0.00018 21.7 4.2 2.1 8.6 0.0 3.6 3 0 0 3 3 3 2 BetI-type transcriptional repressor, C-terminal ATPase_2 PF01637.18 gi|347523031|ref|YP_004780601.1| - 0.00092 19.2 0.0 0.044 13.7 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|347523031|ref|YP_004780601.1| - 0.0031 17.8 0.1 0.019 15.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|347523031|ref|YP_004780601.1| - 0.0061 16.9 3.2 0.096 13.1 2.2 2.6 2 1 0 2 2 2 1 AAA ATPase domain CDP-OH_P_transf PF01066.21 gi|347523031|ref|YP_004780601.1| - 0.0062 17.3 0.2 0.67 10.8 0.0 3.0 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase AAA_5 PF07728.14 gi|347523031|ref|YP_004780601.1| - 0.089 12.8 0.1 0.33 11.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|347523031|ref|YP_004780601.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein PIN_4 PF13638.6 gi|347523032|ref|YP_004780602.1| - 0.00056 20.2 0.1 2.3 8.5 0.0 2.9 2 1 1 3 3 3 2 PIN domain DUF3368 PF11848.8 gi|347523032|ref|YP_004780602.1| - 0.00095 18.9 0.1 0.0022 17.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN_9 PF18477.1 gi|347523032|ref|YP_004780602.1| - 0.012 15.9 0.0 0.042 14.1 0.0 1.9 1 1 0 1 1 1 0 PIN like domain UPF0175 PF03683.13 gi|347523033|ref|YP_004780603.1| - 1.5e-08 34.2 0.2 4.6e-08 32.7 0.2 1.8 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Phage_Mu_Gp45 PF06890.12 gi|347523034|ref|YP_004780604.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein PaREP1 PF05942.11 gi|347523035|ref|YP_004780605.1| - 6.5e-05 22.8 1.4 0.00032 20.6 1.4 2.0 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Cas_NE0113 PF09623.10 gi|347523038|ref|YP_004780608.1| - 0.0012 18.6 0.0 0.0016 18.1 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_APE2256 PF09651.10 gi|347523038|ref|YP_004780608.1| - 0.04 13.8 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) DUF1887 PF09002.11 gi|347523038|ref|YP_004780608.1| - 0.05 12.3 0.0 0.063 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|347523038|ref|YP_004780608.1| - 0.08 11.7 0.0 0.097 11.5 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) DUF87 PF01935.17 gi|347523039|ref|YP_004780609.1| - 7.9e-17 62.1 0.0 1.9e-16 60.8 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|347523039|ref|YP_004780609.1| - 1.2e-09 37.4 0.0 5.1e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|347523039|ref|YP_004780609.1| - 2.4e-07 30.4 0.1 0.0018 17.7 0.0 3.2 2 1 1 3 3 3 3 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|347523039|ref|YP_004780609.1| - 5.3e-05 23.5 0.0 0.017 15.4 0.0 2.8 3 0 0 3 3 3 1 AAA domain TrwB_AAD_bind PF10412.9 gi|347523039|ref|YP_004780609.1| - 0.00042 19.4 0.0 0.0011 18.0 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|347523039|ref|YP_004780609.1| - 0.0038 17.6 0.8 0.48 10.8 0.0 3.3 1 1 2 3 3 3 1 AAA ATPase domain DEAD PF00270.29 gi|347523039|ref|YP_004780609.1| - 0.049 13.4 0.0 3.2 7.5 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase Microtub_bd PF16796.5 gi|347523039|ref|YP_004780609.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Microtubule binding AAA_10 PF12846.7 gi|347523039|ref|YP_004780609.1| - 0.27 10.1 0.0 6.4 5.6 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain ATPase_2 PF01637.18 gi|347523040|ref|YP_004780610.1| - 4.5e-17 62.8 0.0 6e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347523040|ref|YP_004780610.1| - 3.4e-11 43.8 0.5 5e-11 43.3 0.5 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523040|ref|YP_004780610.1| - 4.2e-06 27.1 0.0 7.3e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347523040|ref|YP_004780610.1| - 0.00017 22.0 0.0 0.00034 21.0 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|347523040|ref|YP_004780610.1| - 0.00062 19.8 0.1 0.015 15.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|347523040|ref|YP_004780610.1| - 0.016 14.3 0.4 0.049 12.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) RsgA_GTPase PF03193.16 gi|347523040|ref|YP_004780610.1| - 0.031 14.2 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|347523040|ref|YP_004780610.1| - 0.038 13.5 0.0 0.089 12.3 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|347523040|ref|YP_004780610.1| - 0.13 12.3 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|347523040|ref|YP_004780610.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.5 1 1 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.14 gi|347523040|ref|YP_004780610.1| - 0.15 11.2 0.0 2.3 7.4 0.0 2.3 2 1 1 3 3 3 0 KAP family P-loop domain AAA_33 PF13671.6 gi|347523040|ref|YP_004780610.1| - 0.17 12.1 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|347523040|ref|YP_004780610.1| - 0.2 10.3 0.0 0.33 9.6 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein RNA_helicase PF00910.22 gi|347523040|ref|YP_004780610.1| - 0.25 11.7 0.0 0.48 10.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase CcdA PF07362.12 gi|347523042|ref|YP_004780612.1| - 2.7e-05 24.5 0.3 3.5e-05 24.1 0.3 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA ABM PF03992.16 gi|347523042|ref|YP_004780612.1| - 0.0051 16.9 0.2 0.008 16.3 0.2 1.4 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase PSK_trans_fac PF07704.11 gi|347523042|ref|YP_004780612.1| - 0.059 14.1 3.7 0.07 13.9 3.7 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor FUSC PF04632.12 gi|347523042|ref|YP_004780612.1| - 0.073 11.6 0.4 0.076 11.5 0.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family G-gamma PF00631.22 gi|347523042|ref|YP_004780612.1| - 0.11 12.5 2.9 0.88 9.6 0.0 2.1 1 1 1 2 2 2 0 GGL domain TGT PF01702.18 gi|347523044|ref|YP_004780614.1| - 5.2e-11 42.3 0.0 7.2e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Cas_Cas4 PF01930.17 gi|347523047|ref|YP_004780617.1| - 0.0012 18.9 0.0 0.0032 17.6 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF83 ATPase_2 PF01637.18 gi|347523048|ref|YP_004780618.1| - 9.9e-16 58.4 0.0 1.9e-15 57.4 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347523048|ref|YP_004780618.1| - 5.8e-14 52.8 1.3 5.8e-14 52.8 1.3 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523048|ref|YP_004780618.1| - 2.3e-11 44.1 0.0 9.6e-11 42.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|347523048|ref|YP_004780618.1| - 0.0002 21.3 0.0 0.00036 20.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_5 PF07728.14 gi|347523048|ref|YP_004780618.1| - 0.00046 20.2 0.1 0.0022 18.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|347523048|ref|YP_004780618.1| - 0.0017 17.8 0.0 1.5 8.2 0.0 2.3 2 0 0 2 2 2 2 Bacterial TniB protein AAA_33 PF13671.6 gi|347523048|ref|YP_004780618.1| - 0.0035 17.5 0.1 0.011 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|347523048|ref|YP_004780618.1| - 0.0044 17.5 0.0 0.0088 16.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 gi|347523048|ref|YP_004780618.1| - 0.0059 16.2 1.2 0.019 14.6 0.2 2.4 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|347523048|ref|YP_004780618.1| - 0.006 16.3 0.1 0.096 12.4 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.6 gi|347523048|ref|YP_004780618.1| - 0.0071 15.2 0.0 0.16 10.8 0.0 2.2 3 0 0 3 3 3 1 AAA-like domain PPK2 PF03976.14 gi|347523048|ref|YP_004780618.1| - 0.017 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) IstB_IS21 PF01695.17 gi|347523048|ref|YP_004780618.1| - 0.017 14.8 0.0 0.04 13.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|347523048|ref|YP_004780618.1| - 0.018 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|347523048|ref|YP_004780618.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|347523048|ref|YP_004780618.1| - 0.025 13.8 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|347523048|ref|YP_004780618.1| - 0.031 14.7 0.0 0.18 12.2 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|347523048|ref|YP_004780618.1| - 0.035 13.9 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_PrkA PF08298.11 gi|347523048|ref|YP_004780618.1| - 0.052 12.5 0.0 0.071 12.0 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain NACHT PF05729.12 gi|347523048|ref|YP_004780618.1| - 0.06 13.3 0.6 0.21 11.5 0.6 2.0 1 1 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|347523048|ref|YP_004780618.1| - 0.063 13.5 0.0 0.23 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|347523048|ref|YP_004780618.1| - 0.068 13.7 0.0 0.25 11.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|347523048|ref|YP_004780618.1| - 0.095 12.7 0.0 2 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|347523048|ref|YP_004780618.1| - 0.14 12.5 0.0 0.26 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase DUF3800 PF12686.7 gi|347523049|ref|YP_004780619.1| - 0.019 15.6 0.0 0.02 15.5 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) ACT PF01842.25 gi|347523050|ref|YP_004780620.1| - 0.0031 17.2 0.1 0.005 16.6 0.1 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|347523050|ref|YP_004780620.1| - 0.14 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 ACT domain LytR_C PF13399.6 gi|347523051|ref|YP_004780621.1| - 0.02 15.9 0.1 0.023 15.6 0.1 1.1 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator ACT_7 PF13840.6 gi|347523051|ref|YP_004780621.1| - 0.25 11.2 0.0 0.27 11.0 0.0 1.1 1 0 0 1 1 1 0 ACT domain CRISPR_Cas2 PF09827.9 gi|347523052|ref|YP_004780622.1| - 3.3e-16 59.2 0.0 3.7e-16 59.1 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|347523053|ref|YP_004780623.1| - 3.9e-69 232.9 0.0 4.6e-69 232.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|347523054|ref|YP_004780624.1| - 1.9e-69 234.2 0.0 3.6e-69 233.4 0.0 1.4 1 1 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|347523054|ref|YP_004780624.1| - 0.011 15.9 0.0 5.6 7.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF83 Toxin_24 PF08094.11 gi|347523054|ref|YP_004780624.1| - 5.4 6.9 8.8 13 5.7 8.8 1.6 1 0 0 1 1 1 0 Conotoxin TVIIA/GS family HTH_DeoR PF08220.12 gi|347523055|ref|YP_004780625.1| - 4e-05 23.3 0.1 7.8e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|347523055|ref|YP_004780625.1| - 4.1e-05 23.3 0.5 9.7e-05 22.0 0.5 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|347523055|ref|YP_004780625.1| - 0.00083 18.9 1.9 0.0047 16.5 0.2 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|347523055|ref|YP_004780625.1| - 0.001 18.9 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|347523055|ref|YP_004780625.1| - 0.0022 18.1 0.4 0.011 15.8 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|347523055|ref|YP_004780625.1| - 0.0064 16.3 0.0 0.023 14.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|347523055|ref|YP_004780625.1| - 0.024 14.4 2.0 1.4 8.9 0.2 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|347523055|ref|YP_004780625.1| - 0.041 13.7 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_1 PF00126.27 gi|347523055|ref|YP_004780625.1| - 0.054 13.4 0.2 0.12 12.4 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 gi|347523055|ref|YP_004780625.1| - 0.066 13.3 0.8 0.066 13.3 0.8 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HD PF01966.22 gi|347523058|ref|YP_004780628.1| - 2.4e-08 34.3 0.3 4.8e-08 33.3 0.2 1.8 1 1 1 2 2 2 1 HD domain HD_6 PF18019.1 gi|347523058|ref|YP_004780628.1| - 2.5e-06 27.8 1.8 6.4e-06 26.4 1.8 1.8 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|347523058|ref|YP_004780628.1| - 0.0025 17.3 0.1 0.006 16.1 0.1 1.6 1 0 0 1 1 1 1 HDOD domain DUF1931 PF09123.11 gi|347523058|ref|YP_004780628.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) MIOX PF05153.15 gi|347523058|ref|YP_004780628.1| - 0.18 11.4 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Myo-inositol oxygenase Helicase_C PF00271.31 gi|347523059|ref|YP_004780629.1| - 1.2e-07 32.1 0.0 2.3e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|347523059|ref|YP_004780629.1| - 2.7e-07 30.5 0.0 1.3e-06 28.4 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase Cas_Cas5d PF09704.10 gi|347523061|ref|YP_004780631.1| - 0.059 13.2 0.0 0.16 11.8 0.0 1.8 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|347523062|ref|YP_004780632.1| - 6.4e-53 179.5 0.0 1.2e-52 178.7 0.0 1.4 1 1 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 HEPN PF05168.14 gi|347523064|ref|YP_004780634.1| - 2e-18 66.7 0.6 2.6e-18 66.3 0.6 1.1 1 0 0 1 1 1 1 HEPN domain PaaX PF07848.12 gi|347523064|ref|YP_004780634.1| - 0.059 13.6 3.5 0.079 13.2 0.3 2.3 2 1 1 3 3 3 0 PaaX-like protein NTP_transf_2 PF01909.23 gi|347523065|ref|YP_004780635.1| - 1.8e-09 37.7 0.0 2.2e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523065|ref|YP_004780635.1| - 0.011 15.8 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase DUF2062 PF09835.9 gi|347523065|ref|YP_004780635.1| - 0.21 11.5 0.6 0.31 10.9 0.6 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) NTP_transf_2 PF01909.23 gi|347523066|ref|YP_004780636.1| - 5e-12 46.0 0.0 7.4e-12 45.4 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523066|ref|YP_004780636.1| - 3.8e-06 26.9 0.0 4.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Adenyl_cycl_N PF12633.7 gi|347523066|ref|YP_004780636.1| - 0.00052 20.0 0.0 0.00054 19.9 0.0 1.1 1 0 0 1 1 1 1 Adenylate cyclase NT domain MdcG PF10620.9 gi|347523066|ref|YP_004780636.1| - 0.036 13.8 0.0 0.052 13.3 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG DNA_pol_B_palm PF14792.6 gi|347523066|ref|YP_004780636.1| - 0.098 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.14 gi|347523067|ref|YP_004780637.1| - 2.3e-27 95.5 0.1 2.9e-27 95.1 0.1 1.1 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|347523067|ref|YP_004780637.1| - 0.034 14.1 0.7 0.049 13.5 0.7 1.3 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family TPR_12 PF13424.6 gi|347523067|ref|YP_004780637.1| - 0.054 13.8 5.1 4.2 7.7 5.1 2.7 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|347523067|ref|YP_004780637.1| - 1.5 9.1 7.4 3.8 7.9 0.9 3.2 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|347523067|ref|YP_004780637.1| - 9.5 7.4 10.9 15 6.7 3.2 3.3 3 1 0 3 3 3 0 Tetratricopeptide repeat SdpI PF13630.6 gi|347523068|ref|YP_004780638.1| - 0.3 11.2 6.3 0.58 10.3 6.3 1.4 1 0 0 1 1 1 0 SdpI/YhfL protein family bPH_5 PF10882.8 gi|347523069|ref|YP_004780639.1| - 0.013 15.5 0.0 0.02 15.0 0.0 1.4 1 1 0 1 1 1 0 Bacterial PH domain DUF2207 PF09972.9 gi|347523069|ref|YP_004780639.1| - 9.3 4.9 6.2 12 4.5 6.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Cas_Cas02710 PF09670.10 gi|347523070|ref|YP_004780640.1| - 0.014 14.2 0.3 0.014 14.2 0.3 2.4 1 1 1 3 3 3 0 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.11 gi|347523070|ref|YP_004780640.1| - 0.05 12.3 0.0 0.092 11.4 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1887) HHH_9 PF17674.1 gi|347523070|ref|YP_004780640.1| - 0.075 13.9 0.0 0.18 12.7 0.0 1.6 1 0 0 1 1 1 0 HHH domain Mo-co_dimer PF03404.16 gi|347523071|ref|YP_004780641.1| - 0.039 14.0 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Mo-co oxidoreductase dimerisation domain LPD22 PF18834.1 gi|347523073|ref|YP_004780643.1| - 0.0003 21.0 0.1 0.00033 20.8 0.1 1.1 1 0 0 1 1 1 1 Large polyvalent protein associated domain 22 TPR_4 PF07721.14 gi|347523074|ref|YP_004780644.1| - 0.003 18.0 3.8 0.0087 16.6 3.8 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|347523074|ref|YP_004780644.1| - 0.0075 16.1 1.7 0.01 15.7 0.6 1.8 1 1 1 2 2 2 1 Tetratricopeptide repeat CDPS PF16715.5 gi|347523074|ref|YP_004780644.1| - 0.015 14.9 0.2 0.016 14.9 0.2 1.1 1 0 0 1 1 1 0 Cyclodipeptide synthase ABATE PF07336.11 gi|347523074|ref|YP_004780644.1| - 0.04 14.6 3.3 0.041 14.6 3.3 1.1 1 0 0 1 1 1 0 Putative stress-induced transcription regulator VbhA PF18495.1 gi|347523075|ref|YP_004780645.1| - 0.078 12.9 0.8 0.27 11.1 0.1 2.2 1 1 0 2 2 2 0 Antitoxin VbhA RST PF12174.8 gi|347523075|ref|YP_004780645.1| - 0.13 12.2 0.1 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 RCD1-SRO-TAF4 (RST) plant domain Fic PF02661.18 gi|347523077|ref|YP_004780647.1| - 9.3e-07 29.7 0.0 1.4e-06 29.1 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family DUF4729 PF15866.5 gi|347523077|ref|YP_004780647.1| - 0.053 12.8 0.0 0.067 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4729) DUF2157 PF09925.9 gi|347523078|ref|YP_004780648.1| - 0.011 15.5 3.0 0.019 14.8 3.0 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF2157 PF09925.9 gi|347523079|ref|YP_004780649.1| - 0.75 9.6 8.9 0.31 10.8 1.0 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) CPBP PF02517.16 gi|347523080|ref|YP_004780650.1| - 0.98 9.8 5.1 0.29 11.5 1.0 2.0 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease DUF1722 PF08349.11 gi|347523081|ref|YP_004780651.1| - 0.21 11.9 0.0 0.24 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) 4PPT_N PF17837.1 gi|347523081|ref|YP_004780651.1| - 0.61 10.2 3.8 1.4 9.1 0.8 2.0 1 1 1 2 2 2 0 4'-phosphopantetheinyl transferase N-terminal domain PIN PF01850.21 gi|347523082|ref|YP_004780652.1| - 0.0053 17.2 0.3 0.011 16.2 0.3 1.5 1 1 0 1 1 1 1 PIN domain STAS_2 PF13466.6 gi|347523083|ref|YP_004780653.1| - 0.037 14.4 1.9 0.063 13.6 0.2 2.2 2 1 0 3 3 3 0 STAS domain TilS PF09179.11 gi|347523083|ref|YP_004780653.1| - 0.045 14.2 0.8 0.087 13.3 0.8 1.5 1 0 0 1 1 1 0 TilS substrate binding domain Catalase-rel PF06628.12 gi|347523084|ref|YP_004780654.1| - 0.052 13.8 0.2 0.11 12.7 0.2 1.6 1 1 0 1 1 1 0 Catalase-related immune-responsive ARGLU PF15346.6 gi|347523084|ref|YP_004780654.1| - 0.21 11.5 2.1 0.25 11.2 0.6 1.7 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 PPR_1 PF12854.7 gi|347523086|ref|YP_004780656.1| - 0.0058 16.3 0.6 0.81 9.4 0.1 2.6 2 1 0 2 2 2 2 PPR repeat PPR PF01535.20 gi|347523086|ref|YP_004780656.1| - 0.03 14.6 0.1 9.2 6.8 0.0 2.8 2 0 0 2 2 2 0 PPR repeat GST_C_2 PF13410.6 gi|347523086|ref|YP_004780656.1| - 0.069 13.2 0.1 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain PPR_2 PF13041.6 gi|347523086|ref|YP_004780656.1| - 0.14 12.3 0.0 18 5.6 0.0 2.8 3 0 0 3 3 3 0 PPR repeat family DUF553 PF04473.12 gi|347523087|ref|YP_004780657.1| - 0.011 15.3 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain DUF2613 PF11021.8 gi|347523087|ref|YP_004780657.1| - 0.013 15.6 0.1 0.03 14.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF3040 PF11239.8 gi|347523088|ref|YP_004780658.1| - 0.39 11.0 0.2 0.39 11.0 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF1664 PF07889.12 gi|347523095|ref|YP_004780665.1| - 3.4e-08 33.6 14.1 0.019 15.0 2.6 4.4 2 1 2 4 4 4 3 Protein of unknown function (DUF1664) Apolipoprotein PF01442.18 gi|347523095|ref|YP_004780665.1| - 1.9e-07 31.2 23.1 6.5e-06 26.2 9.9 2.3 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|347523095|ref|YP_004780665.1| - 2.8e-07 30.6 26.5 0.006 16.6 0.2 4.1 1 1 3 4 4 4 4 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.6 gi|347523095|ref|YP_004780665.1| - 0.00017 20.4 9.4 0.0065 15.2 0.1 2.0 1 1 1 2 2 2 2 AAA domain ApoO PF09769.9 gi|347523095|ref|YP_004780665.1| - 0.0022 18.0 3.2 0.0055 16.7 0.7 2.8 1 1 2 3 3 2 1 Apolipoprotein O BshC PF10079.9 gi|347523095|ref|YP_004780665.1| - 0.011 14.6 8.2 0.018 13.8 5.0 2.0 1 1 1 2 2 2 0 Bacillithiol biosynthesis BshC DUF948 PF06103.11 gi|347523095|ref|YP_004780665.1| - 0.02 15.2 24.8 0.34 11.2 2.1 5.6 1 1 2 4 4 4 0 Bacterial protein of unknown function (DUF948) ApoLp-III PF07464.11 gi|347523095|ref|YP_004780665.1| - 0.02 15.0 8.2 0.26 11.4 3.9 2.7 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) FAS_I_H PF18314.1 gi|347523095|ref|YP_004780665.1| - 0.021 14.5 2.7 2.3 7.8 0.1 3.2 3 1 0 3 3 3 0 Fatty acid synthase type I helical domain WXG100 PF06013.12 gi|347523095|ref|YP_004780665.1| - 0.023 14.9 4.7 13 6.1 0.0 4.4 3 1 1 4 4 4 0 Proteins of 100 residues with WXG Med21 PF11221.8 gi|347523095|ref|YP_004780665.1| - 0.026 14.8 8.8 0.095 13.0 3.4 2.6 2 1 0 2 2 2 0 Subunit 21 of Mediator complex Prominin PF05478.11 gi|347523095|ref|YP_004780665.1| - 0.035 12.1 12.8 0.07 11.1 10.5 2.0 1 1 1 2 2 2 0 Prominin CLZ PF16526.5 gi|347523095|ref|YP_004780665.1| - 0.04 14.3 17.8 1.7 9.0 0.0 4.9 3 1 3 6 6 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Filament PF00038.21 gi|347523095|ref|YP_004780665.1| - 0.041 13.5 15.3 2.3 7.7 0.1 3.1 1 1 2 3 3 3 0 Intermediate filament protein Fib_alpha PF08702.10 gi|347523095|ref|YP_004780665.1| - 0.088 13.0 11.5 4.2 7.6 3.8 3.2 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|347523095|ref|YP_004780665.1| - 0.091 12.8 21.5 3.6 7.6 1.8 4.1 1 1 3 4 4 4 0 Laminin Domain II FlaC_arch PF05377.11 gi|347523095|ref|YP_004780665.1| - 0.098 13.1 16.2 2.4 8.6 0.0 5.7 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|347523095|ref|YP_004780665.1| - 0.11 13.1 17.3 5.1 7.8 3.5 5.3 3 2 2 5 5 5 0 SlyX IFT57 PF10498.9 gi|347523095|ref|YP_004780665.1| - 0.12 11.3 12.0 3.7 6.4 1.0 2.9 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 DUF16 PF01519.16 gi|347523095|ref|YP_004780665.1| - 0.14 12.7 8.4 27 5.3 3.1 4.2 1 1 3 4 4 4 0 Protein of unknown function DUF16 Mer2 PF09074.10 gi|347523095|ref|YP_004780665.1| - 0.14 12.0 12.1 0.034 13.9 5.2 2.5 2 1 1 3 3 3 0 Mer2 HMMR_N PF15905.5 gi|347523095|ref|YP_004780665.1| - 0.14 11.6 12.9 0.21 11.1 12.2 1.6 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal BST2 PF16716.5 gi|347523095|ref|YP_004780665.1| - 0.15 12.7 10.0 0.91 10.1 2.6 3.6 1 1 0 3 3 3 0 Bone marrow stromal antigen 2 Spc7 PF08317.11 gi|347523095|ref|YP_004780665.1| - 0.15 10.9 17.7 0.16 10.8 6.1 2.7 1 1 0 2 2 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|347523095|ref|YP_004780665.1| - 0.16 12.2 9.2 0.12 12.6 1.9 3.2 2 1 1 4 4 3 0 Seryl-tRNA synthetase N-terminal domain DUF2205 PF10224.9 gi|347523095|ref|YP_004780665.1| - 0.16 11.9 13.7 0.67 10.0 0.7 4.4 3 1 2 5 5 4 0 Short coiled-coil protein KxDL PF10241.9 gi|347523095|ref|YP_004780665.1| - 0.23 11.8 8.9 22 5.4 3.2 3.7 3 1 1 4 4 4 0 Uncharacterized conserved protein PhaP_Bmeg PF09602.10 gi|347523095|ref|YP_004780665.1| - 0.47 10.4 3.3 2 8.3 0.5 2.5 2 1 1 3 3 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) FAM184 PF15665.5 gi|347523095|ref|YP_004780665.1| - 0.48 10.2 8.3 1.3 8.8 6.8 2.2 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B FliT PF05400.13 gi|347523095|ref|YP_004780665.1| - 0.49 11.3 17.0 1.7 9.5 1.0 3.5 2 1 1 3 3 3 0 Flagellar protein FliT Exonuc_VII_L PF02601.15 gi|347523095|ref|YP_004780665.1| - 0.51 9.8 13.8 80 2.6 13.8 2.2 1 1 0 1 1 1 0 Exonuclease VII, large subunit Bacillus_HBL PF05791.11 gi|347523095|ref|YP_004780665.1| - 0.67 9.8 5.9 3.5 7.4 0.4 3.2 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Unstab_antitox PF09720.10 gi|347523095|ref|YP_004780665.1| - 0.82 9.8 3.6 1 9.5 0.3 2.6 2 0 0 2 2 2 0 Putative addiction module component TMPIT PF07851.13 gi|347523095|ref|YP_004780665.1| - 0.96 8.6 6.2 9.5 5.4 0.5 3.0 1 1 2 3 3 3 0 TMPIT-like protein Spectrin PF00435.21 gi|347523095|ref|YP_004780665.1| - 1.3 9.6 6.8 2.1 8.9 2.5 2.6 1 1 2 3 3 3 0 Spectrin repeat SIMPL PF04402.14 gi|347523095|ref|YP_004780665.1| - 1.3 9.4 11.4 0.051 14.0 2.0 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF541) ABC_tran_CTD PF16326.5 gi|347523095|ref|YP_004780665.1| - 1.3 9.3 11.3 1 9.7 2.4 3.6 2 1 1 3 3 3 0 ABC transporter C-terminal domain TolA_bind_tri PF16331.5 gi|347523095|ref|YP_004780665.1| - 1.5 9.0 14.4 3.1 8.0 2.3 4.4 3 1 1 4 4 4 0 TolA binding protein trimerisation T7SS_ESX_EspC PF10824.8 gi|347523095|ref|YP_004780665.1| - 1.6 9.2 13.0 6.7 7.3 0.3 4.0 3 1 1 4 4 4 0 Excreted virulence factor EspC, type VII ESX diderm DUF5631 PF18645.1 gi|347523095|ref|YP_004780665.1| - 1.7 9.1 7.5 4.1 7.8 0.2 3.7 2 2 1 4 4 4 0 Family of unknown function (DUF5631) YtxH PF12732.7 gi|347523095|ref|YP_004780665.1| - 2.3 8.8 11.8 15 6.2 0.2 4.2 3 1 0 3 3 3 0 YtxH-like protein CdvA PF18822.1 gi|347523095|ref|YP_004780665.1| - 2.3 8.1 13.3 11 5.9 0.3 3.7 3 1 0 4 4 3 0 CdvA-like coiled-coil domain BBP1_C PF15272.6 gi|347523095|ref|YP_004780665.1| - 4 7.2 6.0 17 5.1 3.1 2.7 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal TMCO5 PF14992.6 gi|347523095|ref|YP_004780665.1| - 4 6.9 15.1 2.5e+02 1.1 14.9 2.2 1 1 0 1 1 1 0 TMCO5 family COG2 PF06148.11 gi|347523095|ref|YP_004780665.1| - 4.2 7.5 14.9 3.2 7.8 0.5 4.4 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1690 PF07956.11 gi|347523095|ref|YP_004780665.1| - 5.6 7.4 10.6 1.3 9.4 2.6 2.5 2 1 0 2 2 2 0 Protein of Unknown function (DUF1690) Muted PF14942.6 gi|347523095|ref|YP_004780665.1| - 7.3 6.9 8.2 98 3.3 0.0 3.0 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein Allexi_40kDa PF05549.11 gi|347523095|ref|YP_004780665.1| - 7.4 6.0 13.6 10 5.5 0.7 3.0 1 1 1 3 3 3 0 Allexivirus 40kDa protein DUF4404 PF14357.6 gi|347523095|ref|YP_004780665.1| - 8.8 7.0 12.0 19 6.0 0.2 3.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4404) DUF1192 PF06698.11 gi|347523095|ref|YP_004780665.1| - 9.9 6.3 6.8 1.7 8.7 0.7 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF1192) AAA_16 PF13191.6 gi|347523096|ref|YP_004780666.1| - 5e-07 30.3 0.3 1.3e-05 25.7 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|347523096|ref|YP_004780666.1| - 1.9e-06 28.3 0.0 0.018 15.5 0.0 2.2 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|347523096|ref|YP_004780666.1| - 3.7e-06 27.0 0.1 0.00016 21.7 0.1 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|347523096|ref|YP_004780666.1| - 0.0013 19.0 0.2 0.0038 17.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.6 gi|347523096|ref|YP_004780666.1| - 0.0023 18.3 0.1 0.086 13.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|347523096|ref|YP_004780666.1| - 0.0039 16.7 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_14 PF13173.6 gi|347523096|ref|YP_004780666.1| - 0.0051 16.8 0.0 0.85 9.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|347523096|ref|YP_004780666.1| - 0.0056 16.4 0.0 2.6 7.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|347523096|ref|YP_004780666.1| - 0.0058 16.2 0.1 0.017 14.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|347523096|ref|YP_004780666.1| - 0.006 16.3 0.0 0.015 15.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|347523096|ref|YP_004780666.1| - 0.006 16.3 0.1 0.058 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|347523096|ref|YP_004780666.1| - 0.0068 16.9 1.0 0.019 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|347523096|ref|YP_004780666.1| - 0.008 15.9 0.1 2.7 7.7 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|347523096|ref|YP_004780666.1| - 0.0083 15.3 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_3 PF07726.11 gi|347523096|ref|YP_004780666.1| - 0.023 14.5 0.0 4.7 7.1 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|347523096|ref|YP_004780666.1| - 0.038 13.4 0.0 7.5 5.9 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|347523096|ref|YP_004780666.1| - 0.05 13.9 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|347523096|ref|YP_004780666.1| - 0.067 13.4 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347523096|ref|YP_004780666.1| - 0.085 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Roc PF08477.13 gi|347523096|ref|YP_004780666.1| - 0.092 13.0 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_2 PF07724.14 gi|347523096|ref|YP_004780666.1| - 0.11 12.6 0.0 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.12 gi|347523096|ref|YP_004780666.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|347523096|ref|YP_004780666.1| - 0.15 12.6 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|347523096|ref|YP_004780666.1| - 0.16 12.0 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF2201_N PF13203.6 gi|347523097|ref|YP_004780667.1| - 2.2e-07 30.8 0.8 5.2e-07 29.5 0.0 2.0 1 1 1 2 2 2 1 Putative metallopeptidase domain VWA_CoxE PF05762.14 gi|347523097|ref|YP_004780667.1| - 0.00012 21.6 0.7 0.00026 20.5 0.7 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|347523097|ref|YP_004780667.1| - 0.042 14.0 0.0 0.087 13.0 0.0 1.5 1 0 0 1 1 1 0 VWA-like domain (DUF2201) Transglut_core PF01841.19 gi|347523097|ref|YP_004780667.1| - 0.098 13.1 0.4 0.37 11.2 0.0 2.0 2 0 0 2 2 2 0 Transglutaminase-like superfamily RsdA_SigD_bd PF16751.5 gi|347523097|ref|YP_004780667.1| - 0.13 12.6 0.6 0.43 10.9 0.0 2.1 2 0 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region PaREP1 PF05942.11 gi|347523100|ref|YP_004780670.1| - 1.6e-27 95.7 6.6 2.1e-27 95.3 6.6 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|347523100|ref|YP_004780670.1| - 7.9e-05 22.8 3.5 0.00034 20.7 3.5 1.8 1 1 0 1 1 1 1 HEPN domain DUF5618 PF18498.1 gi|347523100|ref|YP_004780670.1| - 0.014 15.6 0.0 0.019 15.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5618) RHH_1 PF01402.21 gi|347523100|ref|YP_004780670.1| - 0.082 12.9 0.4 0.082 12.9 0.4 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|347523100|ref|YP_004780670.1| - 0.14 12.7 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system PIG-S PF10510.9 gi|347523100|ref|YP_004780670.1| - 0.29 9.9 0.1 0.4 9.5 0.1 1.1 1 0 0 1 1 1 0 Phosphatidylinositol-glycan biosynthesis class S protein BsuPI PF12690.7 gi|347523101|ref|YP_004780671.1| - 0.083 12.9 0.0 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Intracellular proteinase inhibitor COX14 PF14880.6 gi|347523101|ref|YP_004780671.1| - 0.55 10.1 2.1 0.9 9.4 2.1 1.2 1 0 0 1 1 1 0 Cytochrome oxidase c assembly ABC2_membrane PF01061.24 gi|347523102|ref|YP_004780672.1| - 5.2e-08 32.6 19.0 7.8e-08 32.0 19.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|347523102|ref|YP_004780672.1| - 0.0015 17.8 19.8 0.0018 17.5 19.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|347523103|ref|YP_004780673.1| - 3.6e-25 89.1 0.0 5e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523103|ref|YP_004780673.1| - 2.2e-10 40.8 0.0 2.2e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|347523103|ref|YP_004780673.1| - 6.6e-05 22.6 0.2 0.00011 21.9 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|347523103|ref|YP_004780673.1| - 0.001 18.6 0.0 0.76 9.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|347523103|ref|YP_004780673.1| - 0.0023 18.3 0.0 0.0049 17.3 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|347523103|ref|YP_004780673.1| - 0.0024 17.5 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347523103|ref|YP_004780673.1| - 0.0032 17.2 0.8 0.0032 17.2 0.8 1.9 2 1 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|347523103|ref|YP_004780673.1| - 0.0034 16.1 0.0 0.35 9.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|347523103|ref|YP_004780673.1| - 0.0035 17.1 0.1 0.0072 16.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|347523103|ref|YP_004780673.1| - 0.0067 16.7 0.1 0.02 15.1 0.2 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|347523103|ref|YP_004780673.1| - 0.0078 16.7 0.0 0.012 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|347523103|ref|YP_004780673.1| - 0.016 15.5 0.1 0.049 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|347523103|ref|YP_004780673.1| - 0.039 13.7 0.0 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|347523103|ref|YP_004780673.1| - 0.046 14.2 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|347523103|ref|YP_004780673.1| - 0.061 13.7 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|347523103|ref|YP_004780673.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|347523103|ref|YP_004780673.1| - 0.13 12.2 0.2 0.22 11.4 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|347523103|ref|YP_004780673.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|347523103|ref|YP_004780673.1| - 0.2 11.7 0.0 0.21 11.6 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PIN PF01850.21 gi|347523105|ref|YP_004780675.1| - 2.5e-14 53.8 3.3 2.8e-14 53.6 3.3 1.0 1 0 0 1 1 1 1 PIN domain TM140 PF14985.6 gi|347523105|ref|YP_004780675.1| - 0.0055 16.3 0.2 0.11 12.0 0.0 2.0 1 1 1 2 2 2 1 TM140 protein family PIN_2 PF10130.9 gi|347523105|ref|YP_004780675.1| - 0.024 14.9 0.6 0.03 14.6 0.6 1.1 1 0 0 1 1 1 0 PIN domain GATase_4 PF13230.6 gi|347523107|ref|YP_004780677.1| - 1.9e-31 109.0 0.0 2.4e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|347523107|ref|YP_004780677.1| - 1.2e-12 48.2 0.0 2e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|347523107|ref|YP_004780677.1| - 0.0098 15.8 0.0 0.029 14.3 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain AIRS_C PF02769.22 gi|347523108|ref|YP_004780678.1| - 1.3e-24 87.1 1.6 1.3e-24 87.1 1.6 1.8 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|347523108|ref|YP_004780678.1| - 1.4e-18 67.3 1.7 2.8e-18 66.4 0.9 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PaREP1 PF05942.11 gi|347523109|ref|YP_004780679.1| - 3.1e-25 88.3 0.5 4.2e-25 87.9 0.1 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family TRM PF02005.16 gi|347523110|ref|YP_004780680.1| - 1.7e-94 317.1 0.0 2.2e-94 316.7 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|347523110|ref|YP_004780680.1| - 2.3e-09 37.3 0.0 3.7e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|347523110|ref|YP_004780680.1| - 5.2e-08 32.6 0.1 7.9e-08 32.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|347523110|ref|YP_004780680.1| - 5.7e-06 26.0 0.0 9e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|347523110|ref|YP_004780680.1| - 0.00035 21.6 0.0 0.00088 20.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|347523110|ref|YP_004780680.1| - 0.00038 20.1 0.0 0.00086 19.0 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|347523110|ref|YP_004780680.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347523110|ref|YP_004780680.1| - 0.0072 17.0 0.0 0.019 15.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|347523110|ref|YP_004780680.1| - 0.023 13.9 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase MTS PF05175.14 gi|347523110|ref|YP_004780680.1| - 0.034 13.7 0.0 0.072 12.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|347523110|ref|YP_004780680.1| - 0.035 14.7 0.1 0.14 12.8 0.0 2.1 2 0 0 2 2 1 0 Methyltransferase domain Spermine_synth PF01564.17 gi|347523110|ref|YP_004780680.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain UPF0020 PF01170.18 gi|347523110|ref|YP_004780680.1| - 0.14 11.9 0.0 0.35 10.5 0.0 1.7 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 zf-ribbon_3 PF13248.6 gi|347523110|ref|YP_004780680.1| - 4.3 6.9 6.8 18 4.9 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|347523110|ref|YP_004780680.1| - 4.8 6.9 9.8 29 4.4 0.5 3.6 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347523110|ref|YP_004780680.1| - 6.4 6.6 7.7 5.6 6.8 0.8 2.5 2 0 0 2 2 2 0 zinc-ribbon domain B-block_TFIIIC PF04182.12 gi|347523111|ref|YP_004780681.1| - 3.6e-08 33.5 0.1 5e-08 33.0 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.22 gi|347523111|ref|YP_004780681.1| - 0.00034 20.5 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 MarR family RNA_pol_Rpc34 PF05158.12 gi|347523111|ref|YP_004780681.1| - 0.0064 15.9 0.2 0.92 8.8 0.0 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit DHHA1 PF02272.19 gi|347523112|ref|YP_004780682.1| - 0.00078 19.9 0.0 0.0023 18.4 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|347523112|ref|YP_004780682.1| - 0.14 12.4 0.0 0.36 11.1 0.0 1.7 1 1 0 1 1 1 0 DHH family Dpy-30 PF05186.13 gi|347523112|ref|YP_004780682.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Dpy-30 motif Peptidase_M29 PF02073.15 gi|347523114|ref|YP_004780684.1| - 2.2e-92 309.9 0.0 2.5e-92 309.8 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_S24 PF00717.23 gi|347523114|ref|YP_004780684.1| - 0.16 11.9 0.0 0.45 10.5 0.0 1.7 2 0 0 2 2 2 0 Peptidase S24-like Helicase_RecD PF05127.14 gi|347523115|ref|YP_004780685.1| - 8.1e-38 130.0 0.0 1.4e-37 129.2 0.0 1.4 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.11 gi|347523115|ref|YP_004780685.1| - 1.9e-09 37.4 0.0 4.2e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|347523115|ref|YP_004780685.1| - 3e-07 30.3 0.0 3.6e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|347523115|ref|YP_004780685.1| - 0.0002 21.7 0.0 0.0063 16.8 0.0 2.9 2 1 1 3 3 3 1 AAA domain DUF815 PF05673.13 gi|347523115|ref|YP_004780685.1| - 0.0022 17.2 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|347523115|ref|YP_004780685.1| - 0.0089 16.4 0.2 0.0089 16.4 0.2 3.2 4 0 0 4 4 4 1 AAA ATPase domain VapB_antitoxin PF09957.9 gi|347523115|ref|YP_004780685.1| - 0.18 11.7 0.3 0.62 10.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB DUF4350 PF14258.6 gi|347523115|ref|YP_004780685.1| - 0.29 11.6 3.0 4.2 7.9 0.5 3.6 4 1 0 4 4 4 0 Domain of unknown function (DUF4350) PIN PF01850.21 gi|347523117|ref|YP_004780687.1| - 4.9e-08 33.5 2.0 6.3e-08 33.2 2.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|347523117|ref|YP_004780687.1| - 0.05 13.8 0.3 0.079 13.2 0.3 1.4 1 1 0 1 1 1 0 PIN domain TadZ_N PF16968.5 gi|347523117|ref|YP_004780687.1| - 0.14 11.9 0.2 0.19 11.4 0.2 1.2 1 0 0 1 1 1 0 Pilus assembly protein TadZ N-terminal CBS PF00571.28 gi|347523118|ref|YP_004780688.1| - 3.4e-24 85.0 10.2 7.1e-06 26.4 0.8 4.3 4 0 0 4 4 4 4 CBS domain RHH_1 PF01402.21 gi|347523119|ref|YP_004780689.1| - 3.2e-06 26.9 0.4 3.2e-06 26.9 0.4 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family VAPB_antitox PF02697.14 gi|347523119|ref|YP_004780689.1| - 0.00047 20.9 0.1 0.00053 20.7 0.1 1.2 1 0 0 1 1 1 1 Putative antitoxin PIN PF01850.21 gi|347523120|ref|YP_004780690.1| - 3.6e-19 69.5 0.4 4.4e-19 69.2 0.4 1.1 1 0 0 1 1 1 1 PIN domain DEK_C PF08766.11 gi|347523120|ref|YP_004780690.1| - 0.0019 18.1 0.6 0.0037 17.2 0.6 1.6 1 1 0 1 1 1 1 DEK C terminal domain SPO22 PF08631.10 gi|347523120|ref|YP_004780690.1| - 0.0059 16.1 0.0 0.007 15.9 0.0 1.1 1 0 0 1 1 1 1 Meiosis protein SPO22/ZIP4 like PIN_3 PF13470.6 gi|347523120|ref|YP_004780690.1| - 0.0087 16.8 0.3 0.011 16.5 0.3 1.2 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|347523120|ref|YP_004780690.1| - 0.015 15.5 0.1 0.026 14.8 0.1 1.4 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.6 gi|347523120|ref|YP_004780690.1| - 0.092 12.6 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) DUF5615 PF18480.1 gi|347523120|ref|YP_004780690.1| - 0.17 11.6 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) DUF167 PF02594.16 gi|347523121|ref|YP_004780691.1| - 3.6e-13 49.4 0.0 6.1e-13 48.7 0.0 1.4 2 0 0 2 2 2 1 Uncharacterised ACR, YggU family COG1872 Integrase_1 PF12835.7 gi|347523121|ref|YP_004780691.1| - 0.087 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Integrase PreAtp-grasp PF18604.1 gi|347523121|ref|YP_004780691.1| - 0.091 12.4 0.2 0.15 11.7 0.2 1.5 1 1 0 1 1 1 0 Pre ATP-grasp domain BacA PF02673.18 gi|347523122|ref|YP_004780692.1| - 2.7e-18 66.6 13.8 9.7e-18 64.8 13.8 1.9 1 1 0 1 1 1 1 Bacitracin resistance protein BacA CPP1-like PF11833.8 gi|347523122|ref|YP_004780692.1| - 0.0072 16.0 4.9 0.0072 16.0 4.9 1.9 2 0 0 2 2 2 1 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2569 PF10754.9 gi|347523122|ref|YP_004780692.1| - 0.067 13.6 3.0 1 9.8 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2569) Glyco_trans_4_2 PF13477.6 gi|347523122|ref|YP_004780692.1| - 0.071 13.1 0.6 6.1 6.9 0.1 2.8 2 1 1 3 3 3 0 Glycosyl transferase 4-like FUSC-like PF12805.7 gi|347523122|ref|YP_004780692.1| - 5.8 5.9 7.0 1.7 7.6 3.9 1.6 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS DUF2299 PF10061.9 gi|347523124|ref|YP_004780694.1| - 1.5e-11 44.2 0.0 1.7e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF4187 PF13821.6 gi|347523124|ref|YP_004780694.1| - 0.082 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) DUF3267 PF11667.8 gi|347523126|ref|YP_004780696.1| - 2.4e-10 40.7 0.5 2.7e-10 40.5 0.5 1.1 1 0 0 1 1 1 1 Putative zincin peptidase Peptidase_M50 PF02163.22 gi|347523126|ref|YP_004780696.1| - 0.00049 19.4 0.5 0.00066 19.0 0.3 1.3 1 1 0 1 1 1 1 Peptidase family M50 Radical_SAM PF04055.21 gi|347523127|ref|YP_004780697.1| - 3.7e-17 63.2 0.0 7.9e-17 62.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|347523127|ref|YP_004780697.1| - 1.1e-06 29.0 0.0 2.3e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|347523127|ref|YP_004780697.1| - 7.4e-05 23.0 0.0 0.00014 22.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347523127|ref|YP_004780697.1| - 0.009 16.1 0.0 0.022 14.9 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Calici_coat_C PF08435.11 gi|347523127|ref|YP_004780697.1| - 0.054 13.0 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Calicivirus coat protein C-terminal OTOS PF15182.6 gi|347523127|ref|YP_004780697.1| - 0.2 11.6 0.3 27 4.8 0.0 2.8 3 0 0 3 3 3 0 Otospiralin Glyco_transf_4 PF13439.6 gi|347523129|ref|YP_004780699.1| - 1.8e-06 28.1 2.6 3.3e-06 27.2 1.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|347523129|ref|YP_004780699.1| - 2.4e-06 28.1 13.9 8.5e-06 26.3 4.5 2.2 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|347523129|ref|YP_004780699.1| - 0.0015 18.9 0.0 0.0061 17.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 PDDEXK_1 PF12705.7 gi|347523130|ref|YP_004780700.1| - 3.7e-11 43.4 3.0 1.6e-09 38.1 1.8 2.3 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|347523130|ref|YP_004780700.1| - 9.3e-05 22.6 0.8 0.00027 21.1 0.8 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|347523130|ref|YP_004780700.1| - 0.00021 21.6 0.1 0.00035 20.9 0.1 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Dna2 PF08696.11 gi|347523130|ref|YP_004780700.1| - 0.075 12.8 0.0 0.2 11.5 0.0 1.5 1 1 1 2 2 2 0 DNA replication factor Dna2 Ribonuc_red_lgC PF02867.15 gi|347523131|ref|YP_004780701.1| - 8.2e-129 430.5 0.0 3.4e-94 316.3 0.0 2.3 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|347523131|ref|YP_004780701.1| - 7.4e-16 57.9 0.1 1.7e-15 56.8 0.1 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain HlyD_D4 PF16572.5 gi|347523131|ref|YP_004780701.1| - 0.044 13.6 0.2 0.16 11.9 0.2 2.0 1 1 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB NTP_transf_2 PF01909.23 gi|347523132|ref|YP_004780702.1| - 1.6e-09 37.9 0.0 2.1e-09 37.6 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523132|ref|YP_004780702.1| - 1.3e-07 31.6 0.0 1.7e-07 31.3 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|347523132|ref|YP_004780702.1| - 0.014 15.2 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|347523133|ref|YP_004780703.1| - 1.4e-31 109.0 0.3 1.7e-31 108.8 0.3 1.0 1 0 0 1 1 1 1 HEPN domain HEPN_AbiV PF18728.1 gi|347523133|ref|YP_004780703.1| - 0.00086 19.5 0.5 0.0067 16.6 0.3 2.0 2 0 0 2 2 2 1 AbiV PaREP1 PF05942.11 gi|347523133|ref|YP_004780703.1| - 0.0095 15.9 2.9 0.012 15.5 2.9 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Transport_MerF PF11431.8 gi|347523134|ref|YP_004780704.1| - 0.33 10.9 3.4 1.9 8.4 0.1 3.0 3 0 0 3 3 3 0 Membrane transport protein MerF DUF2442 PF10387.9 gi|347523135|ref|YP_004780705.1| - 0.16 12.3 0.0 0.36 11.2 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2442) PaREP1 PF05942.11 gi|347523137|ref|YP_004780707.1| - 5.3e-08 32.8 1.2 7.2e-08 32.4 1.2 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ExoD PF06055.12 gi|347523137|ref|YP_004780707.1| - 0.16 11.4 2.5 1.1 8.6 0.6 2.1 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD LEDGF PF11467.8 gi|347523138|ref|YP_004780708.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Lens epithelium-derived growth factor (LEDGF) CLP1_P PF16575.5 gi|347523139|ref|YP_004780709.1| - 1.8e-26 93.1 0.0 2.4e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop PaREP1 PF05942.11 gi|347523140|ref|YP_004780710.1| - 1.1e-27 96.2 1.5 1.9e-27 95.5 0.1 1.8 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family PaREP1 PF05942.11 gi|347523144|ref|YP_004780714.1| - 5e-31 107.0 0.4 7.6e-31 106.4 0.4 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SesA PF17107.5 gi|347523144|ref|YP_004780714.1| - 0.0001 22.5 0.0 0.084 13.1 0.0 2.3 2 0 0 2 2 2 2 N-terminal domain on NACHT_NTPase and P-loop NTPases HEPN PF05168.14 gi|347523144|ref|YP_004780714.1| - 0.0096 16.0 0.4 0.088 12.9 0.4 2.1 1 1 0 1 1 1 1 HEPN domain DUF1905 PF08922.11 gi|347523144|ref|YP_004780714.1| - 0.075 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) PaREP1 PF05942.11 gi|347523145|ref|YP_004780715.1| - 1.9e-26 92.3 2.9 2.8e-26 91.7 2.9 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|347523145|ref|YP_004780715.1| - 0.0023 18.0 1.0 0.0095 16.1 1.0 1.9 1 1 0 1 1 1 1 HEPN domain SfsA PF03749.13 gi|347523146|ref|YP_004780716.1| - 5.2e-27 94.4 0.0 7e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|347523146|ref|YP_004780716.1| - 1.4e-14 54.0 0.2 3.5e-14 52.7 0.2 1.7 1 0 0 1 1 1 1 SfsA N-terminal OB domain HTH_34 PF13601.6 gi|347523148|ref|YP_004780718.1| - 1.3e-12 47.7 0.0 1.6e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|347523148|ref|YP_004780718.1| - 0.00012 21.6 0.0 0.00038 20.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|347523148|ref|YP_004780718.1| - 0.0041 16.9 0.0 0.0069 16.2 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|347523148|ref|YP_004780718.1| - 0.0046 16.8 0.0 0.014 15.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|347523148|ref|YP_004780718.1| - 0.0093 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|347523148|ref|YP_004780718.1| - 0.011 15.7 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|347523148|ref|YP_004780718.1| - 0.025 14.2 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB Fe_dep_repress PF01325.19 gi|347523148|ref|YP_004780718.1| - 0.033 14.4 0.0 0.061 13.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Helicase_IV_N PF12462.8 gi|347523148|ref|YP_004780718.1| - 0.21 11.5 0.0 0.3 11.0 0.0 1.1 1 0 0 1 1 1 0 DNA helicase IV / RNA helicase N terminal DUF5518 PF17647.1 gi|347523149|ref|YP_004780719.1| - 6e-07 29.6 42.7 6.7e-07 29.5 42.7 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Antimicrobial_1 PF08018.11 gi|347523149|ref|YP_004780719.1| - 6.7 7.0 7.3 0.82 9.9 1.5 2.6 2 0 0 2 2 2 0 Frog antimicrobial peptide NRDD PF13597.6 gi|347523151|ref|YP_004780721.1| - 4.2e-127 425.3 0.0 4.8e-127 425.1 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|347523151|ref|YP_004780721.1| - 1.4 8.4 5.7 5.1 6.6 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|347523151|ref|YP_004780721.1| - 1.7 8.4 3.9 6.1 6.7 3.9 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DDHD PF02862.17 gi|347523152|ref|YP_004780722.1| - 0.28 11.3 1.9 0.41 10.8 1.9 1.2 1 0 0 1 1 1 0 DDHD domain RIFIN PF02009.16 gi|347523152|ref|YP_004780722.1| - 0.39 10.5 19.1 0.66 9.8 19.1 1.3 1 0 0 1 1 1 0 Rifin Macoilin PF09726.9 gi|347523152|ref|YP_004780722.1| - 0.57 8.7 10.2 0.8 8.2 10.2 1.1 1 0 0 1 1 1 0 Macoilin family Dsh_C PF12316.8 gi|347523152|ref|YP_004780722.1| - 2.3 8.6 7.0 4 7.8 7.0 1.3 1 0 0 1 1 1 0 Segment polarity protein dishevelled (Dsh) C terminal Rib_5-P_isom_A PF06026.14 gi|347523153|ref|YP_004780723.1| - 3.9e-39 134.0 0.0 4.7e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Sugar-bind PF04198.13 gi|347523153|ref|YP_004780723.1| - 0.005 16.0 0.0 0.0082 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative sugar-binding domain DUF1967 PF09269.11 gi|347523153|ref|YP_004780723.1| - 0.026 14.5 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) DeoRC PF00455.22 gi|347523153|ref|YP_004780723.1| - 0.17 11.8 0.1 2 8.3 0.0 2.1 2 0 0 2 2 2 0 DeoR C terminal sensor domain SWIM PF04434.17 gi|347523154|ref|YP_004780724.1| - 4.6e-06 26.2 0.1 7.5e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger DUF2559 PF10832.8 gi|347523155|ref|YP_004780725.1| - 0.0013 18.8 0.9 0.62 10.2 0.0 3.5 2 1 1 3 3 3 1 Protein of unknown function (DUF2559) POX PF07526.11 gi|347523155|ref|YP_004780725.1| - 0.036 14.6 0.0 0.068 13.7 0.0 1.4 1 0 0 1 1 1 0 Associated with HOX Herpes_BBRF1 PF04793.12 gi|347523155|ref|YP_004780725.1| - 0.093 11.8 0.1 0.13 11.2 0.1 1.2 1 0 0 1 1 1 0 BRRF1-like protein DUF3720 PF12517.8 gi|347523155|ref|YP_004780725.1| - 0.11 13.5 0.0 0.16 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3720) HDV_ag PF01517.18 gi|347523156|ref|YP_004780726.1| - 0.04 13.7 0.0 0.041 13.7 0.0 1.1 1 0 0 1 1 1 0 Hepatitis delta virus delta antigen Aminotran_1_2 PF00155.21 gi|347523157|ref|YP_004780727.1| - 9.1e-57 192.9 0.0 1e-56 192.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|347523157|ref|YP_004780727.1| - 0.04 13.2 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Chorismate_synt PF01264.21 gi|347523158|ref|YP_004780728.1| - 2.1e-122 407.9 0.0 2.5e-122 407.7 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase PaREP1 PF05942.11 gi|347523159|ref|YP_004780729.1| - 8.7e-31 106.2 6.0 1.4e-30 105.6 6.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family tRNA-synt_His PF13393.6 gi|347523159|ref|YP_004780729.1| - 0.0094 15.2 0.8 0.014 14.7 0.8 1.3 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HEPN PF05168.14 gi|347523159|ref|YP_004780729.1| - 0.024 14.8 5.4 0.076 13.1 5.4 1.9 1 1 0 1 1 1 0 HEPN domain SesA PF17107.5 gi|347523159|ref|YP_004780729.1| - 0.024 14.8 0.2 0.14 12.3 0.2 2.0 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF357 PF04010.13 gi|347523159|ref|YP_004780729.1| - 0.053 13.6 0.1 0.23 11.6 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF357) EFP PF01132.20 gi|347523159|ref|YP_004780729.1| - 0.055 13.5 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Elongation factor P (EF-P) OB domain CcdA PF07362.12 gi|347523159|ref|YP_004780729.1| - 0.12 12.8 0.3 0.34 11.4 0.1 2.1 1 1 1 2 2 2 0 Post-segregation antitoxin CcdA WbqC PF08889.11 gi|347523159|ref|YP_004780729.1| - 0.2 11.5 0.1 14 5.5 0.0 2.5 1 1 2 3 3 3 0 WbqC-like protein family DUF4398 PF14346.6 gi|347523159|ref|YP_004780729.1| - 0.8 10.4 8.2 0.22 12.1 3.7 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4398) TraL PF07178.11 gi|347523160|ref|YP_004780730.1| - 0.25 11.9 3.6 2 8.9 0.1 3.5 3 0 0 3 3 3 0 TraL protein PIN PF01850.21 gi|347523161|ref|YP_004780731.1| - 1.2e-14 54.9 0.6 1.4e-14 54.6 0.6 1.0 1 0 0 1 1 1 1 PIN domain Ribosomal_S16 PF00886.19 gi|347523162|ref|YP_004780732.1| - 0.058 13.5 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S16 MazE_antitoxin PF04014.18 gi|347523163|ref|YP_004780733.1| - 1.8e-08 34.1 0.3 3.2e-08 33.3 0.3 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin CDC48_N PF02359.18 gi|347523163|ref|YP_004780733.1| - 8.1e-05 22.7 0.5 0.25 11.5 0.1 2.1 2 0 0 2 2 2 2 Cell division protein 48 (CDC48), N-terminal domain eIF-1a PF01176.19 gi|347523163|ref|YP_004780733.1| - 0.036 13.9 1.1 0.49 10.2 0.5 2.0 1 1 1 2 2 2 0 Translation initiation factor 1A / IF-1 PrlF_antitoxin PF15937.5 gi|347523163|ref|YP_004780733.1| - 0.094 13.2 0.0 0.14 12.7 0.0 1.3 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin DUF1905 PF08922.11 gi|347523163|ref|YP_004780733.1| - 0.14 12.2 0.2 1.5 9.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) dUTPase PF00692.19 gi|347523164|ref|YP_004780734.1| - 3.3e-16 59.2 0.0 6.1e-16 58.3 0.0 1.4 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|347523164|ref|YP_004780734.1| - 1e-08 34.4 0.0 2.1e-08 33.3 0.0 1.5 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) PRAI PF00697.22 gi|347523165|ref|YP_004780735.1| - 1.7e-12 47.5 0.0 2e-11 44.0 0.0 2.1 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Ribosomal_S6e PF01092.19 gi|347523166|ref|YP_004780736.1| - 1e-31 109.5 0.0 1.7e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S6e Lactamase_B PF00753.27 gi|347523168|ref|YP_004780738.1| - 3.7e-07 30.3 0.1 8.3e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|347523168|ref|YP_004780738.1| - 0.00045 19.8 0.2 0.021 14.3 0.1 2.2 2 0 0 2 2 2 2 Beta-lactamase superfamily domain DUF4202 PF13875.6 gi|347523168|ref|YP_004780738.1| - 0.015 15.2 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4202) Lactamase_B_3 PF13483.6 gi|347523168|ref|YP_004780738.1| - 0.06 13.2 0.0 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain Rubrerythrin PF02915.17 gi|347523169|ref|YP_004780739.1| - 2.1e-10 41.2 0.5 0.0005 20.5 0.0 2.3 2 0 0 2 2 2 2 Rubrerythrin VIT1 PF01988.19 gi|347523169|ref|YP_004780739.1| - 3.5e-06 27.0 21.9 0.00027 20.9 4.1 2.3 1 1 1 2 2 2 2 VIT family COQ7 PF03232.13 gi|347523169|ref|YP_004780739.1| - 0.0019 18.0 0.8 0.75 9.5 0.0 2.6 1 1 2 3 3 3 2 Ubiquinone biosynthesis protein COQ7 DUF4781 PF16013.5 gi|347523169|ref|YP_004780739.1| - 0.13 11.1 0.2 0.19 10.5 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) SPC25 PF06703.11 gi|347523169|ref|YP_004780739.1| - 0.3 10.9 1.0 0.59 9.9 0.2 1.8 1 1 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) MazE_antitoxin PF04014.18 gi|347523171|ref|YP_004780741.1| - 1.9e-08 34.0 2.1 1.9e-08 34.0 2.1 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|347523171|ref|YP_004780741.1| - 0.0012 18.9 0.1 0.0017 18.4 0.1 1.4 1 1 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MraZ PF02381.18 gi|347523171|ref|YP_004780741.1| - 0.0092 15.9 0.0 0.012 15.6 0.0 1.3 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like DUF104 PF01954.16 gi|347523171|ref|YP_004780741.1| - 0.02 15.3 0.2 0.036 14.5 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF104 PrlF_antitoxin PF15937.5 gi|347523171|ref|YP_004780741.1| - 0.045 14.2 0.0 0.062 13.8 0.0 1.2 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin TOBE PF03459.17 gi|347523171|ref|YP_004780741.1| - 0.062 13.6 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 TOBE domain UFD1 PF03152.14 gi|347523171|ref|YP_004780741.1| - 0.094 12.2 0.0 0.098 12.1 0.0 1.2 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 PIN PF01850.21 gi|347523172|ref|YP_004780742.1| - 2e-17 63.8 0.2 2.2e-17 63.7 0.2 1.0 1 0 0 1 1 1 1 PIN domain FTCD_C PF04961.12 gi|347523172|ref|YP_004780742.1| - 0.17 11.6 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase TAN PF11640.8 gi|347523173|ref|YP_004780743.1| - 0.014 15.5 0.3 0.72 10.0 0.3 2.3 2 0 0 2 2 2 0 Telomere-length maintenance and DNA damage repair HTH_25 PF13413.6 gi|347523173|ref|YP_004780743.1| - 0.062 13.2 0.2 11 6.0 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain TAF6_C PF07571.13 gi|347523173|ref|YP_004780743.1| - 0.072 13.4 0.1 0.36 11.2 0.1 2.1 2 0 0 2 2 2 0 TAF6 C-terminal HEAT repeat domain DUF2710 PF10921.8 gi|347523173|ref|YP_004780743.1| - 0.1 13.0 0.1 0.38 11.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2710) AAA_21 PF13304.6 gi|347523175|ref|YP_004780745.1| - 2e-24 86.9 0.0 3.2e-14 53.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|347523175|ref|YP_004780745.1| - 2.5e-17 63.7 0.7 3.4e-11 43.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|347523175|ref|YP_004780745.1| - 2e-10 40.5 0.2 3.2e-08 33.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|347523175|ref|YP_004780745.1| - 6.1e-09 35.6 1.8 1e-06 28.3 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|347523175|ref|YP_004780745.1| - 2.6e-08 34.6 0.1 3.9e-08 34.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|347523175|ref|YP_004780745.1| - 0.00077 20.0 0.0 0.14 12.6 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_27 PF13514.6 gi|347523175|ref|YP_004780745.1| - 0.0029 17.2 0.1 0.0045 16.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347523175|ref|YP_004780745.1| - 0.014 15.6 0.1 0.063 13.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|347523175|ref|YP_004780745.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Alpha_Helical PF18489.1 gi|347523177|ref|YP_004780747.1| - 8.1e-40 135.9 0.0 1.1e-39 135.4 0.0 1.2 1 0 0 1 1 1 1 Alpha helical domain tRNA_bind PF01588.20 gi|347523177|ref|YP_004780747.1| - 1.5e-05 25.0 0.0 2.6e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain MarC PF01914.17 gi|347523178|ref|YP_004780748.1| - 0.0058 16.0 1.3 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 MarC family integral membrane protein Inhibitor_I53 PF11714.8 gi|347523178|ref|YP_004780748.1| - 0.02 15.1 0.1 8.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Thrombin inhibitor Madanin Ni_hydr_CYTB PF01292.20 gi|347523178|ref|YP_004780748.1| - 0.08 12.5 8.0 12 5.5 0.2 2.1 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 Pox_I5 PF04713.12 gi|347523178|ref|YP_004780748.1| - 2.1 8.5 7.5 0.54 10.3 3.1 2.1 2 0 0 2 2 2 0 Poxvirus protein I5 Asn_synthase PF00733.21 gi|347523179|ref|YP_004780749.1| - 2.1e-20 73.7 0.0 1.3e-16 61.2 0.1 2.0 1 1 1 2 2 2 2 Asparagine synthase QueC PF06508.13 gi|347523179|ref|YP_004780749.1| - 0.00038 20.0 0.0 0.001 18.6 0.0 1.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|347523179|ref|YP_004780749.1| - 0.026 13.6 0.0 0.031 13.4 0.0 1.1 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|347523179|ref|YP_004780749.1| - 0.055 12.3 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Mrr_cat PF04471.12 gi|347523180|ref|YP_004780750.1| - 1.2e-08 35.0 0.1 2.9e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Restriction endonuclease PLN_propep PF16485.5 gi|347523180|ref|YP_004780750.1| - 0.043 13.5 0.8 28 4.5 0.0 3.4 3 0 0 3 3 3 0 Protealysin propeptide NusB PF01029.18 gi|347523180|ref|YP_004780750.1| - 0.045 14.0 0.3 5.2 7.3 0.0 2.7 3 0 0 3 3 3 0 NusB family RuvA_C PF07499.13 gi|347523180|ref|YP_004780750.1| - 0.047 14.2 0.0 0.97 9.9 0.0 2.7 2 0 0 2 2 2 0 RuvA, C-terminal domain ApoC-I PF04691.12 gi|347523180|ref|YP_004780750.1| - 0.11 12.5 0.5 11 6.1 0.0 3.5 4 0 0 4 4 4 0 Apolipoprotein C-I (ApoC-1) PaREP1 PF05942.11 gi|347523181|ref|YP_004780751.1| - 3.7e-21 75.2 0.6 3.7e-21 75.2 0.6 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family GABP-alpha PF11620.8 gi|347523181|ref|YP_004780751.1| - 0.18 12.0 1.2 3 8.1 0.4 2.3 2 0 0 2 2 2 0 GA-binding protein alpha chain CotE PF10628.9 gi|347523183|ref|YP_004780753.1| - 5.4e-05 22.9 0.1 6.8e-05 22.6 0.1 1.1 1 0 0 1 1 1 1 Outer spore coat protein E (CotE) DUF3042 PF11240.8 gi|347523184|ref|YP_004780754.1| - 0.57 10.2 3.9 13 5.9 0.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3042) dUTPase PF00692.19 gi|347523185|ref|YP_004780755.1| - 1.1e-08 34.8 0.0 1.5e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 dUTPase PfkB PF00294.24 gi|347523186|ref|YP_004780756.1| - 3.5e-13 49.5 2.9 4.3e-08 32.8 0.1 2.9 3 0 0 3 3 3 2 pfkB family carbohydrate kinase ADP_PFK_GK PF04587.15 gi|347523186|ref|YP_004780756.1| - 0.17 10.4 0.4 1.3 7.5 0.4 2.0 2 0 0 2 2 2 0 ADP-specific Phosphofructokinase/Glucokinase conserved region Ldh_1_N PF00056.23 gi|347523187|ref|YP_004780757.1| - 1.6e-36 125.5 0.2 2.9e-36 124.7 0.2 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|347523187|ref|YP_004780757.1| - 3.6e-14 53.0 0.0 6.1e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain TrkA_N PF02254.18 gi|347523187|ref|YP_004780757.1| - 2.1e-07 31.2 0.5 4.3e-07 30.2 0.5 1.6 1 0 0 1 1 1 1 TrkA-N domain Glyco_hydro_4 PF02056.16 gi|347523187|ref|YP_004780757.1| - 5e-05 22.9 2.0 0.01 15.4 0.2 2.2 1 1 1 2 2 2 2 Family 4 glycosyl hydrolase PEP_hydrolase PF09370.10 gi|347523187|ref|YP_004780757.1| - 0.0018 17.6 0.1 0.003 16.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like F420_oxidored PF03807.17 gi|347523187|ref|YP_004780757.1| - 0.0028 18.2 0.8 0.011 16.3 0.3 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|347523187|ref|YP_004780757.1| - 0.0079 16.2 0.6 0.17 11.8 0.0 2.5 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding PF02629.19 gi|347523187|ref|YP_004780757.1| - 0.048 14.4 0.2 0.11 13.1 0.2 1.7 1 0 0 1 1 1 0 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|347523187|ref|YP_004780757.1| - 0.055 13.7 0.3 0.12 12.7 0.3 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Neur PF00064.18 gi|347523187|ref|YP_004780757.1| - 0.084 11.6 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Neuraminidase MFS_1 PF07690.16 gi|347523188|ref|YP_004780758.1| - 6.2e-43 147.1 38.5 5.6e-25 88.0 13.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|347523188|ref|YP_004780758.1| - 1.6e-13 50.3 20.6 4e-11 42.5 8.2 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|347523188|ref|YP_004780758.1| - 2.3e-10 39.9 18.2 9.7e-06 24.7 8.2 2.4 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|347523188|ref|YP_004780758.1| - 0.00013 20.6 25.9 0.00018 20.0 25.9 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector DUF1360 PF07098.11 gi|347523188|ref|YP_004780758.1| - 0.046 13.7 0.6 0.42 10.6 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1360) ATP_bind_1 PF03029.17 gi|347523189|ref|YP_004780759.1| - 6.1e-59 199.7 0.0 6.9e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|347523189|ref|YP_004780759.1| - 0.00015 22.0 0.0 0.00094 19.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347523189|ref|YP_004780759.1| - 0.001 18.8 0.0 0.0056 16.4 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|347523189|ref|YP_004780759.1| - 0.0023 18.1 0.0 0.0042 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|347523189|ref|YP_004780759.1| - 0.0029 17.7 0.0 0.041 14.0 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|347523189|ref|YP_004780759.1| - 0.0033 17.8 0.0 0.011 16.1 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|347523189|ref|YP_004780759.1| - 0.0039 17.1 0.0 0.016 15.1 0.0 1.9 2 0 0 2 2 2 1 NACHT domain SRP54 PF00448.22 gi|347523189|ref|YP_004780759.1| - 0.0042 16.7 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|347523189|ref|YP_004780759.1| - 0.0055 16.5 0.0 3.7 7.3 0.0 2.2 2 0 0 2 2 2 2 mRNA cleavage and polyadenylation factor CLP1 P-loop IstB_IS21 PF01695.17 gi|347523189|ref|YP_004780759.1| - 0.0078 16.0 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|347523189|ref|YP_004780759.1| - 0.0084 16.0 0.0 1.4 8.8 0.0 3.1 3 1 0 3 3 3 1 RsgA GTPase AAA_18 PF13238.6 gi|347523189|ref|YP_004780759.1| - 0.014 16.0 0.0 0.028 15.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain FeoB_N PF02421.18 gi|347523189|ref|YP_004780759.1| - 0.016 14.7 0.1 0.29 10.7 0.1 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_28 PF13521.6 gi|347523189|ref|YP_004780759.1| - 0.028 14.7 0.0 0.55 10.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain RNA12 PF10443.9 gi|347523189|ref|YP_004780759.1| - 0.037 12.8 0.0 0.052 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein SMC_N PF02463.19 gi|347523189|ref|YP_004780759.1| - 0.042 13.3 0.0 0.068 12.6 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 gi|347523189|ref|YP_004780759.1| - 0.058 13.9 0.0 0.093 13.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|347523189|ref|YP_004780759.1| - 0.061 13.7 0.0 0.33 11.4 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Zeta_toxin PF06414.12 gi|347523189|ref|YP_004780759.1| - 0.066 12.5 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.19 gi|347523189|ref|YP_004780759.1| - 0.067 12.8 0.0 1.4 8.5 0.0 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|347523189|ref|YP_004780759.1| - 0.075 13.1 0.1 10 6.2 0.0 2.3 2 0 0 2 2 2 0 Dynamin family CbiA PF01656.23 gi|347523189|ref|YP_004780759.1| - 0.091 12.8 0.0 0.12 12.4 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|347523189|ref|YP_004780759.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PhoH PF02562.16 gi|347523189|ref|YP_004780759.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ArsA_ATPase PF02374.15 gi|347523189|ref|YP_004780759.1| - 0.16 11.1 0.0 1.5 7.9 0.0 2.3 3 0 0 3 3 3 0 Anion-transporting ATPase AAA_21 PF13304.6 gi|347523189|ref|YP_004780759.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Lactamase_B_2 PF12706.7 gi|347523190|ref|YP_004780760.1| - 8.6e-23 80.9 0.0 1e-22 80.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347523190|ref|YP_004780760.1| - 2.2e-13 50.7 0.8 3.3e-13 50.1 0.8 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|347523190|ref|YP_004780760.1| - 0.0006 19.7 0.1 0.0019 18.1 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|347523190|ref|YP_004780760.1| - 0.061 12.8 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain NAC PF01849.18 gi|347523191|ref|YP_004780761.1| - 0.0017 18.3 0.3 0.0033 17.4 0.3 1.5 1 0 0 1 1 1 1 NAC domain CUE PF02845.16 gi|347523191|ref|YP_004780761.1| - 0.0076 15.9 0.0 0.095 12.4 0.0 2.2 2 0 0 2 2 2 1 CUE domain HOIP-UBA PF16678.5 gi|347523191|ref|YP_004780761.1| - 0.01 15.8 1.0 0.011 15.7 1.0 1.4 1 1 0 1 1 1 0 HOIP UBA domain pair UBA_4 PF14555.6 gi|347523191|ref|YP_004780761.1| - 0.063 13.1 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Clp_N PF02861.20 gi|347523191|ref|YP_004780761.1| - 0.069 13.3 2.6 2.9 8.1 0.3 2.9 4 0 0 4 4 4 0 Clp amino terminal domain, pathogenicity island component CopK PF11525.8 gi|347523191|ref|YP_004780761.1| - 0.092 12.4 0.2 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 Copper resistance protein K DUF3606 PF12244.8 gi|347523191|ref|YP_004780761.1| - 0.099 12.6 0.3 11 6.1 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3606) Beta_propel PF09826.9 gi|347523192|ref|YP_004780762.1| - 9.8e-24 84.1 0.0 2.9e-22 79.2 0.0 2.2 2 1 0 2 2 2 2 Beta propeller domain ID PF18543.1 gi|347523192|ref|YP_004780762.1| - 0.14 12.2 0.1 0.28 11.2 0.1 1.5 1 0 0 1 1 1 0 Intracellular delivery domain LexA_DNA_bind PF01726.16 gi|347523193|ref|YP_004780763.1| - 1.3e-06 28.1 0.0 2.1e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_20 PF12840.7 gi|347523193|ref|YP_004780763.1| - 2.5e-06 27.5 0.1 5.3e-06 26.4 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|347523193|ref|YP_004780763.1| - 2.8e-06 27.1 0.0 3.9e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|347523193|ref|YP_004780763.1| - 0.0007 19.4 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|347523193|ref|YP_004780763.1| - 0.0015 18.4 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|347523193|ref|YP_004780763.1| - 0.021 14.6 0.3 0.039 13.7 0.3 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|347523193|ref|YP_004780763.1| - 0.038 13.9 0.0 0.072 13.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|347523193|ref|YP_004780763.1| - 0.079 13.5 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain CTP_synth_N PF06418.14 gi|347523194|ref|YP_004780764.1| - 2.6e-128 426.9 0.4 3.4e-128 426.5 0.4 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|347523194|ref|YP_004780764.1| - 8.5e-48 162.6 0.0 1.5e-47 161.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|347523194|ref|YP_004780764.1| - 3.4e-10 40.1 0.0 1.4e-09 38.0 0.0 2.0 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|347523194|ref|YP_004780764.1| - 0.00048 20.2 0.0 0.00074 19.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.6 gi|347523195|ref|YP_004780765.1| - 0.0005 20.1 0.0 0.001 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347523195|ref|YP_004780765.1| - 0.0031 17.8 0.1 0.14 12.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|347523195|ref|YP_004780765.1| - 0.0046 16.9 0.0 0.74 9.7 0.0 2.2 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea TrmB PF01978.19 gi|347523195|ref|YP_004780765.1| - 0.0071 16.2 0.0 33 4.5 0.0 3.4 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB APS_kinase PF01583.20 gi|347523196|ref|YP_004780766.1| - 1.2e-52 178.0 0.0 1.4e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|347523196|ref|YP_004780766.1| - 3.5e-14 53.2 0.0 4.6e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|347523196|ref|YP_004780766.1| - 1e-08 35.0 0.0 1.2e-08 34.8 0.0 1.0 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|347523196|ref|YP_004780766.1| - 1.4e-08 35.4 0.0 2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|347523196|ref|YP_004780766.1| - 2.1e-05 24.8 0.1 0.00014 22.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|347523196|ref|YP_004780766.1| - 2.4e-05 23.5 0.0 3.6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_17 PF13207.6 gi|347523196|ref|YP_004780766.1| - 0.00013 22.4 0.0 0.00023 21.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347523196|ref|YP_004780766.1| - 0.00015 21.5 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|347523196|ref|YP_004780766.1| - 0.00019 21.4 0.0 0.0005 20.0 0.0 1.6 1 1 0 1 1 1 1 NTPase Cytidylate_kin2 PF13189.6 gi|347523196|ref|YP_004780766.1| - 0.00023 21.4 0.0 0.057 13.6 0.0 2.2 1 1 1 2 2 2 1 Cytidylate kinase-like family SRP54 PF00448.22 gi|347523196|ref|YP_004780766.1| - 0.00028 20.6 0.0 0.00041 20.0 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SKI PF01202.22 gi|347523196|ref|YP_004780766.1| - 0.00041 20.5 0.0 0.00088 19.4 0.0 1.5 1 1 0 1 1 1 1 Shikimate kinase CbiA PF01656.23 gi|347523196|ref|YP_004780766.1| - 0.00046 20.2 0.0 0.00077 19.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|347523196|ref|YP_004780766.1| - 0.0015 18.0 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Thymidylate_kin PF02223.17 gi|347523196|ref|YP_004780766.1| - 0.0037 16.9 0.0 0.012 15.3 0.0 1.7 2 0 0 2 2 2 1 Thymidylate kinase AAA_16 PF13191.6 gi|347523196|ref|YP_004780766.1| - 0.0049 17.3 0.1 0.0076 16.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523196|ref|YP_004780766.1| - 0.0056 17.0 0.1 0.035 14.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|347523196|ref|YP_004780766.1| - 0.0056 16.6 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.6 gi|347523196|ref|YP_004780766.1| - 0.0065 16.4 0.0 0.0081 16.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|347523196|ref|YP_004780766.1| - 0.0076 16.2 0.0 0.036 14.0 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 gi|347523196|ref|YP_004780766.1| - 0.0077 16.2 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|347523196|ref|YP_004780766.1| - 0.0097 16.3 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Glyco_trans_4_4 PF13579.6 gi|347523196|ref|YP_004780766.1| - 0.011 16.2 0.8 0.17 12.3 0.8 2.0 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain 6PF2K PF01591.18 gi|347523196|ref|YP_004780766.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase ATP_bind_1 PF03029.17 gi|347523196|ref|YP_004780766.1| - 0.018 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|347523196|ref|YP_004780766.1| - 0.022 14.3 0.2 0.05 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|347523196|ref|YP_004780766.1| - 0.034 13.4 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.22 gi|347523196|ref|YP_004780766.1| - 0.04 13.1 0.0 0.084 12.1 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.21 gi|347523196|ref|YP_004780766.1| - 0.044 13.2 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|347523196|ref|YP_004780766.1| - 0.051 14.0 0.0 0.077 13.4 0.0 1.3 1 0 0 1 1 1 0 RNA helicase CLP1_P PF16575.5 gi|347523196|ref|YP_004780766.1| - 0.06 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop cobW PF02492.19 gi|347523196|ref|YP_004780766.1| - 0.096 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|347523196|ref|YP_004780766.1| - 0.13 12.8 0.0 0.18 12.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter ArsA_ATPase PF02374.15 gi|347523196|ref|YP_004780766.1| - 0.15 11.2 0.0 0.35 10.0 0.0 1.5 2 0 0 2 2 2 0 Anion-transporting ATPase Parvo_NS1 PF01057.17 gi|347523196|ref|YP_004780766.1| - 0.16 11.0 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|347523196|ref|YP_004780766.1| - 0.18 11.0 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) tRNA-synt_2 PF00152.20 gi|347523197|ref|YP_004780767.1| - 4.2e-78 262.6 0.0 5e-78 262.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|347523197|ref|YP_004780767.1| - 7.3e-14 51.5 0.9 1.4e-13 50.6 0.9 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|347523197|ref|YP_004780767.1| - 0.13 12.5 0.1 0.24 11.6 0.1 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|347523197|ref|YP_004780767.1| - 0.15 11.5 0.0 6.8 6.1 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) DUF61 PF01886.16 gi|347523198|ref|YP_004780768.1| - 4.8e-24 84.8 0.0 6.2e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 OMPdecase PF00215.24 gi|347523199|ref|YP_004780769.1| - 6.2e-29 101.2 5.2 7.3e-29 101.0 5.2 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|347523199|ref|YP_004780769.1| - 6.1e-06 25.7 2.9 1.2e-05 24.8 2.9 1.7 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PEP_mutase PF13714.6 gi|347523199|ref|YP_004780769.1| - 0.0002 20.9 9.6 0.0003 20.3 1.7 2.6 1 1 2 3 3 3 2 Phosphoenolpyruvate phosphomutase Aldolase PF01081.19 gi|347523199|ref|YP_004780769.1| - 0.00036 20.0 1.7 0.00036 20.0 1.7 2.2 1 1 1 2 2 2 1 KDPG and KHG aldolase IGPS PF00218.21 gi|347523199|ref|YP_004780769.1| - 0.0023 17.1 0.2 0.0041 16.3 0.2 1.4 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|347523199|ref|YP_004780769.1| - 0.0025 16.7 4.4 0.014 14.2 3.3 2.2 1 1 0 2 2 2 1 Tryptophan synthase alpha chain NanE PF04131.14 gi|347523199|ref|YP_004780769.1| - 0.0088 15.2 2.8 0.024 13.8 2.6 1.8 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Pterin_bind PF00809.22 gi|347523199|ref|YP_004780769.1| - 0.011 15.5 7.1 0.16 11.6 1.1 3.2 1 1 2 3 3 3 0 Pterin binding enzyme 4HFCP_synth PF04476.13 gi|347523199|ref|YP_004780769.1| - 0.053 13.2 5.1 1.8 8.2 1.9 2.4 1 1 1 2 2 2 0 4-HFC-P synthase ADH_zinc_N PF00107.26 gi|347523199|ref|YP_004780769.1| - 0.057 13.4 4.1 0.2 11.6 2.2 2.5 3 0 0 3 3 3 0 Zinc-binding dehydrogenase ABC_tran PF00005.27 gi|347523200|ref|YP_004780770.1| - 1.4e-28 100.1 0.0 3e-28 99.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|347523200|ref|YP_004780770.1| - 6.1e-17 62.4 0.1 1.1e-11 45.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523200|ref|YP_004780770.1| - 7.3e-05 22.3 0.0 0.00015 21.3 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|347523200|ref|YP_004780770.1| - 0.00025 20.8 0.3 0.041 13.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|347523200|ref|YP_004780770.1| - 0.0015 19.0 0.1 0.0033 17.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|347523200|ref|YP_004780770.1| - 0.0015 18.7 0.1 0.025 14.7 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523200|ref|YP_004780770.1| - 0.0035 17.0 0.1 0.0068 16.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|347523200|ref|YP_004780770.1| - 0.0036 16.9 0.1 0.0069 16.0 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|347523200|ref|YP_004780770.1| - 0.01 15.4 2.7 0.022 14.3 0.3 2.4 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|347523200|ref|YP_004780770.1| - 0.025 13.7 0.1 0.048 12.7 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|347523200|ref|YP_004780770.1| - 0.025 13.9 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|347523200|ref|YP_004780770.1| - 0.041 13.2 0.0 0.074 12.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|347523200|ref|YP_004780770.1| - 0.061 13.3 0.8 0.12 12.4 0.1 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|347523200|ref|YP_004780770.1| - 0.081 12.8 0.5 0.25 11.2 0.3 1.9 1 1 1 2 2 2 0 NACHT domain ResIII PF04851.15 gi|347523200|ref|YP_004780770.1| - 0.092 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|347523200|ref|YP_004780770.1| - 0.11 12.9 0.8 1.3 9.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|347523200|ref|YP_004780770.1| - 0.13 12.8 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|347523200|ref|YP_004780770.1| - 0.15 11.6 0.6 0.36 10.4 0.3 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|347523200|ref|YP_004780770.1| - 0.16 12.4 0.0 0.39 11.1 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|347523200|ref|YP_004780770.1| - 0.16 11.6 0.0 1.6 8.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoH PF02562.16 gi|347523200|ref|YP_004780770.1| - 0.19 11.2 0.1 0.49 9.8 0.1 1.7 2 0 0 2 2 2 0 PhoH-like protein TsaE PF02367.17 gi|347523200|ref|YP_004780770.1| - 0.19 11.7 0.1 0.35 10.9 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CbiQ PF02361.16 gi|347523201|ref|YP_004780771.1| - 5.9e-13 48.9 13.7 4.9e-12 45.9 13.8 2.0 1 1 0 1 1 1 1 Cobalt transport protein PDGLE PF13190.6 gi|347523202|ref|YP_004780772.1| - 1.1e-07 31.7 0.1 1.5e-07 31.2 0.1 1.5 1 1 0 1 1 1 1 PDGLE domain DUF4910 PF16254.5 gi|347523202|ref|YP_004780772.1| - 0.11 11.4 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4910) Trp_oprn_chp PF09534.10 gi|347523202|ref|YP_004780772.1| - 0.23 11.3 2.2 0.25 11.1 2.2 1.0 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) CbiM PF01891.16 gi|347523203|ref|YP_004780773.1| - 1.9e-67 227.2 22.5 2.1e-67 227.0 22.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Ldr_toxin PF13940.6 gi|347523203|ref|YP_004780773.1| - 0.22 11.6 0.1 0.22 11.6 0.1 2.9 3 0 0 3 3 3 0 Toxin Ldr, type I toxin-antitoxin system NiFe_hyd_3_EhaA PF17367.2 gi|347523203|ref|YP_004780773.1| - 0.76 10.0 0.0 0.76 10.0 0.0 3.1 2 1 1 3 3 3 0 NiFe-hydrogenase-type-3 Eha complex subunit A HTH_1 PF00126.27 gi|347523204|ref|YP_004780774.1| - 2.2e-13 49.9 1.9 3.2e-13 49.4 0.8 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 gi|347523204|ref|YP_004780774.1| - 0.00019 21.2 0.1 0.00032 20.4 0.1 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 gi|347523204|ref|YP_004780774.1| - 0.00035 20.6 2.5 0.002 18.2 0.6 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain XdhC_CoxI PF02625.16 gi|347523204|ref|YP_004780774.1| - 0.016 15.4 0.2 0.034 14.3 0.2 1.5 1 0 0 1 1 1 0 XdhC and CoxI family HTH_psq PF05225.16 gi|347523204|ref|YP_004780774.1| - 0.023 14.4 0.1 0.035 13.8 0.1 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Topoisom_bac PF01131.20 gi|347523205|ref|YP_004780775.1| - 5.9e-64 216.6 0.0 3.6e-53 181.1 0.0 3.2 3 0 0 3 3 3 3 DNA topoisomerase Toprim PF01751.22 gi|347523205|ref|YP_004780775.1| - 1.3e-20 73.5 0.0 1.2e-19 70.4 0.0 2.4 1 1 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|347523205|ref|YP_004780775.1| - 2.1e-12 47.2 0.0 4.2e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|347523205|ref|YP_004780775.1| - 2.5e-09 36.4 1.6 2.5e-09 36.4 1.6 2.7 4 0 0 4 4 4 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|347523205|ref|YP_004780775.1| - 2.5e-07 31.0 0.0 0.0069 16.7 0.0 3.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|347523205|ref|YP_004780775.1| - 0.0011 19.0 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|347523205|ref|YP_004780775.1| - 0.0084 15.4 0.1 0.087 12.1 0.0 2.2 2 0 0 2 2 2 1 SecA DEAD-like domain DUF2802 PF10975.8 gi|347523205|ref|YP_004780775.1| - 0.11 12.6 0.1 0.65 10.2 0.1 2.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) RAC_head PF16717.5 gi|347523205|ref|YP_004780775.1| - 0.13 13.2 0.1 0.47 11.5 0.1 1.9 1 0 0 1 1 1 0 Ribosome-associated complex head domain zf-ribbon_3 PF13248.6 gi|347523205|ref|YP_004780775.1| - 0.17 11.4 10.1 3.9 7.0 0.3 3.6 3 0 0 3 3 3 0 zinc-ribbon domain CN_hydrolase PF00795.22 gi|347523206|ref|YP_004780776.1| - 1e-18 67.6 0.0 1.3e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase UPF0175 PF03683.13 gi|347523207|ref|YP_004780777.1| - 4.1e-18 64.9 0.6 4.7e-18 64.7 0.6 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.8 gi|347523208|ref|YP_004780778.1| - 1.4e-12 47.1 1.8 2.7e-12 46.3 0.4 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN_9 PF18477.1 gi|347523208|ref|YP_004780778.1| - 0.045 14.1 1.0 0.33 11.3 0.4 2.5 2 1 0 2 2 2 0 PIN like domain ArsA_HSP20 PF17886.1 gi|347523209|ref|YP_004780779.1| - 4.6e-08 32.5 0.1 6.8e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|347523209|ref|YP_004780779.1| - 6.5e-06 26.2 0.0 8.5e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Gram_pos_anchor PF00746.21 gi|347523210|ref|YP_004780780.1| - 9.2 6.3 6.3 0.8 9.7 1.3 1.8 2 0 0 2 2 2 0 LPXTG cell wall anchor motif FGFR3_TM PF18123.1 gi|347523211|ref|YP_004780781.1| - 0.37 10.4 2.9 0.79 9.3 2.9 1.6 1 0 0 1 1 1 0 Fibroblast growth factor receptor 3 transmembrane domain Pilin_N PF07790.11 gi|347523212|ref|YP_004780782.1| - 0.001 19.9 0.2 0.0017 19.2 0.2 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal AFOR_N PF02730.15 gi|347523213|ref|YP_004780783.1| - 1.9e-39 135.6 0.5 2.7e-39 135.1 0.5 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|347523213|ref|YP_004780783.1| - 8.9e-12 44.7 0.0 9.3e-11 41.3 0.0 2.0 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 MiaE_2 PF13794.6 gi|347523213|ref|YP_004780783.1| - 0.08 12.6 0.1 0.3 10.8 0.1 1.9 1 1 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like Methyltr_RsmB-F PF01189.17 gi|347523214|ref|YP_004780784.1| - 1.2e-55 188.3 0.0 1.7e-55 187.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PCMT PF01135.19 gi|347523214|ref|YP_004780784.1| - 1.2e-05 25.2 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|347523214|ref|YP_004780784.1| - 4.1e-05 23.8 0.0 6.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|347523214|ref|YP_004780784.1| - 0.00012 21.9 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|347523214|ref|YP_004780784.1| - 0.023 14.3 0.0 5.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|347523214|ref|YP_004780784.1| - 0.037 13.4 0.0 0.093 12.1 0.0 1.6 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|347523214|ref|YP_004780784.1| - 0.037 14.7 0.7 0.61 10.8 0.0 3.1 3 1 0 3 3 3 0 Methyltransferase domain AP_endonuc_2 PF01261.24 gi|347523215|ref|YP_004780785.1| - 5.1e-22 78.3 0.2 6.2e-22 78.1 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|347523215|ref|YP_004780785.1| - 4.1e-06 26.3 0.1 1.1e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 UV-endonuclease UvdE YdjC PF04794.12 gi|347523215|ref|YP_004780785.1| - 0.024 14.6 0.0 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 YdjC-like protein HAD PF12710.7 gi|347523215|ref|YP_004780785.1| - 0.036 14.5 0.0 0.08 13.3 0.0 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Vps8 PF12816.7 gi|347523215|ref|YP_004780785.1| - 0.062 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Golgi CORVET complex core vacuolar protein 8 PdxJ PF03740.13 gi|347523215|ref|YP_004780785.1| - 0.096 11.8 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ GHMP_kinases_C PF08544.13 gi|347523215|ref|YP_004780785.1| - 0.13 12.6 0.2 8.4 6.8 0.1 3.4 2 1 1 3 3 3 0 GHMP kinases C terminal PMT_2 PF13231.6 gi|347523217|ref|YP_004780787.1| - 4.2e-05 23.8 16.7 4.2e-05 23.8 16.7 4.3 3 1 0 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase GatB_N PF02934.15 gi|347523218|ref|YP_004780788.1| - 4.1e-97 324.8 0.0 5.4e-97 324.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|347523218|ref|YP_004780788.1| - 1.8e-40 138.2 0.1 2.7e-40 137.6 0.1 1.3 1 0 0 1 1 1 1 GatB domain Metallophos PF00149.28 gi|347523220|ref|YP_004780790.1| - 1e-16 62.1 2.4 1.8e-16 61.2 2.4 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|347523220|ref|YP_004780790.1| - 1.3e-13 51.5 0.2 2.3e-13 50.7 0.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MutL PF13941.6 gi|347523220|ref|YP_004780790.1| - 0.0045 15.7 0.0 0.0084 14.7 0.0 1.4 1 0 0 1 1 1 1 MutL protein Metallophos_3 PF14582.6 gi|347523220|ref|YP_004780790.1| - 0.014 14.7 0.1 0.38 10.1 0.1 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily PGA_cap PF09587.10 gi|347523220|ref|YP_004780790.1| - 0.046 13.2 0.0 0.082 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap baeRF_family2 PF18844.1 gi|347523220|ref|YP_004780790.1| - 0.21 11.7 0.3 0.38 10.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 2 Molybdopterin PF00384.22 gi|347523222|ref|YP_004780792.1| - 1.7e-58 198.6 0.0 1.3e-57 195.7 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|347523222|ref|YP_004780792.1| - 4e-16 59.0 0.0 1.3e-15 57.3 0.0 2.0 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|347523222|ref|YP_004780792.1| - 7.2e-10 38.7 1.8 1.4e-09 37.8 1.8 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Prismane PF03063.20 gi|347523223|ref|YP_004780793.1| - 1.5e-116 390.2 0.0 8.7e-99 331.5 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family HTH_3 PF01381.22 gi|347523224|ref|YP_004780794.1| - 9e-07 28.9 0.1 1.9e-06 27.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|347523224|ref|YP_004780794.1| - 4.8e-06 26.2 0.1 9.7e-06 25.2 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|347523224|ref|YP_004780794.1| - 5.4e-06 26.2 0.1 1e-05 25.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_37 PF13744.6 gi|347523224|ref|YP_004780794.1| - 5.4e-05 23.1 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|347523224|ref|YP_004780794.1| - 0.0001 22.6 0.0 0.00017 21.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|347523224|ref|YP_004780794.1| - 0.00024 20.6 0.1 0.00049 19.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|347523224|ref|YP_004780794.1| - 0.0005 19.9 0.2 0.0017 18.2 0.2 1.8 1 1 1 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|347523224|ref|YP_004780794.1| - 0.00066 19.3 0.1 0.0014 18.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|347523224|ref|YP_004780794.1| - 0.00076 19.0 0.1 0.0016 18.0 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|347523224|ref|YP_004780794.1| - 0.00098 19.1 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|347523224|ref|YP_004780794.1| - 0.0041 16.9 0.2 0.0076 16.0 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|347523224|ref|YP_004780794.1| - 0.0061 16.6 0.2 0.015 15.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|347523224|ref|YP_004780794.1| - 0.008 16.1 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|347523224|ref|YP_004780794.1| - 0.009 15.8 0.1 0.018 14.8 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|347523224|ref|YP_004780794.1| - 0.009 16.1 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|347523224|ref|YP_004780794.1| - 0.014 15.8 0.1 0.021 15.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|347523224|ref|YP_004780794.1| - 0.015 14.4 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_11 PF08279.12 gi|347523224|ref|YP_004780794.1| - 0.016 15.2 0.1 0.032 14.2 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|347523224|ref|YP_004780794.1| - 0.021 14.8 0.1 0.042 13.8 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|347523224|ref|YP_004780794.1| - 0.031 14.2 0.1 0.058 13.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_7 PF02796.15 gi|347523224|ref|YP_004780794.1| - 0.037 14.1 0.1 0.07 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_26 PF13443.6 gi|347523224|ref|YP_004780794.1| - 0.045 14.2 0.3 0.086 13.3 0.1 1.6 2 0 0 2 2 1 0 Cro/C1-type HTH DNA-binding domain Sigma70_ECF PF07638.11 gi|347523224|ref|YP_004780794.1| - 0.048 13.5 0.0 0.075 12.9 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_Tnp_ISL3 PF13542.6 gi|347523224|ref|YP_004780794.1| - 0.055 12.9 0.0 0.096 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 YdaS_antitoxin PF15943.5 gi|347523224|ref|YP_004780794.1| - 0.073 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Cro PF09048.10 gi|347523224|ref|YP_004780794.1| - 0.082 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Cro DUF1843 PF08898.10 gi|347523224|ref|YP_004780794.1| - 0.083 13.4 0.4 0.91 10.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) Pex14_N PF04695.13 gi|347523224|ref|YP_004780794.1| - 0.089 13.4 0.0 0.11 13.2 0.0 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region GerE PF00196.19 gi|347523224|ref|YP_004780794.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_29 PF13551.6 gi|347523224|ref|YP_004780794.1| - 0.15 12.1 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Glycos_transf_1 PF00534.20 gi|347523225|ref|YP_004780795.1| - 4.2e-33 114.3 0.0 6.9e-33 113.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|347523225|ref|YP_004780795.1| - 5.5e-26 91.6 0.1 1.4e-25 90.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|347523225|ref|YP_004780795.1| - 2.2e-11 44.1 0.1 9.2e-11 42.0 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|347523225|ref|YP_004780795.1| - 9.1e-10 38.8 0.0 1.9e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|347523225|ref|YP_004780795.1| - 0.00058 18.7 0.0 0.00091 18.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 20 Methyltransf_21 PF05050.12 gi|347523226|ref|YP_004780796.1| - 2.5e-22 79.7 0.0 3.6e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|347523226|ref|YP_004780796.1| - 3.6e-05 23.2 0.0 6.9e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|347523226|ref|YP_004780796.1| - 0.00023 21.0 0.2 0.00046 20.0 0.2 1.4 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|347523226|ref|YP_004780796.1| - 0.023 14.2 0.0 0.048 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|347523226|ref|YP_004780796.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|347523226|ref|YP_004780796.1| - 0.14 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 FtsJ-like methyltransferase Phosphodiest PF01663.22 gi|347523227|ref|YP_004780797.1| - 1.9e-31 109.9 0.1 9.2e-31 107.7 0.1 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase dTDP_sugar_isom PF00908.17 gi|347523228|ref|YP_004780798.1| - 2.9e-67 225.6 0.0 3.2e-67 225.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Glycos_transf_2 PF00535.26 gi|347523229|ref|YP_004780799.1| - 8.3e-20 71.3 0.0 1.3e-19 70.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|347523229|ref|YP_004780799.1| - 1.2e-10 41.7 0.0 3.7e-10 40.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|347523229|ref|YP_004780799.1| - 3.5e-06 27.1 0.0 4.9e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|347523229|ref|YP_004780799.1| - 0.0033 16.9 0.0 0.005 16.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|347523229|ref|YP_004780799.1| - 0.066 13.7 0.0 0.16 12.5 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 RmlD_sub_bind PF04321.17 gi|347523230|ref|YP_004780800.1| - 2.3e-69 233.6 0.0 2.8e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|347523230|ref|YP_004780800.1| - 9.7e-24 84.1 0.0 1.3e-23 83.8 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|347523230|ref|YP_004780800.1| - 1.3e-13 51.1 0.0 2.3e-13 50.2 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|347523230|ref|YP_004780800.1| - 6.7e-13 48.4 0.0 3.7e-12 46.0 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|347523230|ref|YP_004780800.1| - 4.5e-09 35.7 0.0 5.6e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|347523230|ref|YP_004780800.1| - 1e-08 34.7 0.1 2e-06 27.2 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|347523231|ref|YP_004780801.1| - 2.6e-72 244.0 0.0 3.6e-72 243.6 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|347523231|ref|YP_004780801.1| - 2.7e-63 213.6 0.0 3.5e-63 213.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|347523231|ref|YP_004780801.1| - 1.5e-17 63.6 0.0 1.9e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|347523231|ref|YP_004780801.1| - 1.5e-16 60.2 0.0 2.2e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|347523231|ref|YP_004780801.1| - 1.7e-14 53.7 0.0 1.1e-13 51.0 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|347523231|ref|YP_004780801.1| - 1.6e-12 47.2 0.0 1.2e-11 44.3 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|347523231|ref|YP_004780801.1| - 0.0044 16.9 0.0 0.0071 16.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|347523231|ref|YP_004780801.1| - 0.016 14.7 0.1 11 5.4 0.0 3.0 3 0 0 3 3 3 0 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|347523231|ref|YP_004780801.1| - 0.06 13.6 0.0 0.098 12.9 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|347523231|ref|YP_004780801.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 KR domain NTP_transferase PF00483.23 gi|347523232|ref|YP_004780802.1| - 9.8e-43 146.5 0.0 1.2e-42 146.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|347523232|ref|YP_004780802.1| - 1.4e-13 51.5 0.0 2.5e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Bactofilin PF04519.13 gi|347523232|ref|YP_004780802.1| - 3.8e-06 27.1 2.1 9.2e-06 25.9 2.1 1.6 1 0 0 1 1 1 1 Polymer-forming cytoskeletal IspD PF01128.19 gi|347523232|ref|YP_004780802.1| - 0.00025 20.8 0.0 0.00049 19.9 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.24 gi|347523232|ref|YP_004780802.1| - 0.012 15.3 1.5 22 4.9 0.0 4.2 3 1 1 4 4 4 0 Bacterial transferase hexapeptide (six repeats) Glycos_transf_2 PF00535.26 gi|347523232|ref|YP_004780802.1| - 0.039 13.8 0.1 0.1 12.4 0.1 1.7 1 1 1 2 2 2 0 Glycosyl transferase family 2 HD PF01966.22 gi|347523233|ref|YP_004780803.1| - 3e-05 24.3 0.4 4.8e-05 23.6 0.4 1.5 1 0 0 1 1 1 1 HD domain ParBc PF02195.18 gi|347523234|ref|YP_004780804.1| - 2e-07 31.2 0.1 3.4e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|347523234|ref|YP_004780804.1| - 3.1e-05 23.0 0.0 0.076 11.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) ABC2_membrane_3 PF12698.7 gi|347523235|ref|YP_004780805.1| - 1e-14 54.4 11.2 1.3e-14 54.0 11.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|347523235|ref|YP_004780805.1| - 3.9e-11 42.8 18.5 5.9e-11 42.2 18.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|347523235|ref|YP_004780805.1| - 3e-07 30.1 17.4 3e-07 30.1 17.4 2.6 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|347523235|ref|YP_004780805.1| - 5e-05 23.3 9.2 5e-05 23.3 9.2 3.1 2 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|347523235|ref|YP_004780805.1| - 0.00066 19.3 15.2 0.00066 19.3 15.2 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|347523236|ref|YP_004780806.1| - 9.7e-29 100.6 0.0 1.7e-28 99.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523236|ref|YP_004780806.1| - 2.8e-12 47.1 0.0 1.6e-05 24.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|347523236|ref|YP_004780806.1| - 0.00031 21.3 0.0 0.00035 21.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523236|ref|YP_004780806.1| - 0.00037 20.2 0.0 0.00062 19.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|347523236|ref|YP_004780806.1| - 0.0006 19.5 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|347523236|ref|YP_004780806.1| - 0.00086 19.6 0.0 0.0027 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347523236|ref|YP_004780806.1| - 0.00091 19.0 0.1 0.0056 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|347523236|ref|YP_004780806.1| - 0.0027 17.2 0.0 0.0073 15.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|347523236|ref|YP_004780806.1| - 0.0034 17.8 0.0 0.016 15.7 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|347523236|ref|YP_004780806.1| - 0.013 15.2 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|347523236|ref|YP_004780806.1| - 0.019 15.1 0.1 0.059 13.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|347523236|ref|YP_004780806.1| - 0.03 14.7 0.1 0.043 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain HTH_8 PF02954.19 gi|347523236|ref|YP_004780806.1| - 0.036 13.9 0.1 0.081 12.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family AAA_13 PF13166.6 gi|347523236|ref|YP_004780806.1| - 0.042 12.5 0.0 1.2 7.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|347523236|ref|YP_004780806.1| - 0.057 13.5 0.0 0.063 13.3 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.6 gi|347523236|ref|YP_004780806.1| - 0.06 12.9 0.6 0.53 9.8 0.6 2.3 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|347523236|ref|YP_004780806.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|347523236|ref|YP_004780806.1| - 0.082 13.5 0.1 1.4 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|347523236|ref|YP_004780806.1| - 0.082 12.5 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|347523236|ref|YP_004780806.1| - 0.084 10.4 0.0 0.13 9.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) APS_kinase PF01583.20 gi|347523236|ref|YP_004780806.1| - 0.092 12.6 0.0 3.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|347523236|ref|YP_004780806.1| - 0.19 11.6 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|347523236|ref|YP_004780806.1| - 0.19 11.6 0.1 0.46 10.4 0.0 1.6 2 0 0 2 2 1 0 NACHT domain Methyltr_RsmB-F PF01189.17 gi|347523238|ref|YP_004780808.1| - 1.3e-30 106.6 0.0 1.9e-30 106.0 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|347523238|ref|YP_004780808.1| - 0.0023 18.4 0.0 0.0046 17.4 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF MTS PF05175.14 gi|347523238|ref|YP_004780808.1| - 0.0094 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PIG-H PF10181.9 gi|347523238|ref|YP_004780808.1| - 0.1 12.5 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 GPI-GlcNAc transferase complex, PIG-H component Tricorn_PDZ PF14685.6 gi|347523238|ref|YP_004780808.1| - 0.1 12.6 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_M50 PF02163.22 gi|347523239|ref|YP_004780809.1| - 0.00014 21.2 7.5 0.00026 20.4 3.3 2.7 2 1 0 2 2 2 1 Peptidase family M50 ThiP_synth PF10120.9 gi|347523240|ref|YP_004780810.1| - 2.1e-38 131.5 0.0 4.9e-38 130.3 0.0 1.6 2 0 0 2 2 2 1 Thiamine-phosphate synthase Phos_pyr_kin PF08543.12 gi|347523240|ref|YP_004780810.1| - 9.3e-30 103.8 0.1 1.2e-29 103.4 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|347523240|ref|YP_004780810.1| - 0.015 14.7 0.3 0.036 13.4 0.3 1.6 1 1 0 1 1 1 0 pfkB family carbohydrate kinase US6 PF17616.2 gi|347523240|ref|YP_004780810.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Viral unique short region 6 Trp_leader2 PF08056.11 gi|347523240|ref|YP_004780810.1| - 3.3 7.8 4.8 13 5.9 1.6 2.4 1 1 1 2 2 2 0 Tryptophan operon leader peptide Bacteriocin_IIc PF10439.9 gi|347523240|ref|YP_004780810.1| - 7.8 6.7 11.9 0.28 11.3 4.0 2.9 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide 2-Hacid_dh_C PF02826.19 gi|347523241|ref|YP_004780811.1| - 1.3e-59 200.6 0.0 2.2e-59 199.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|347523241|ref|YP_004780811.1| - 2.1e-33 114.8 0.0 2.7e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|347523241|ref|YP_004780811.1| - 1.1e-07 32.1 1.0 2.8e-07 30.8 0.0 2.1 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|347523241|ref|YP_004780811.1| - 8.2e-05 22.7 0.2 0.00018 21.6 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|347523241|ref|YP_004780811.1| - 0.0001 21.7 0.5 0.00071 18.9 0.5 2.0 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|347523241|ref|YP_004780811.1| - 0.025 14.1 0.1 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain XdhC_C PF13478.6 gi|347523241|ref|YP_004780811.1| - 0.093 13.2 0.1 0.34 11.4 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain Aminotran_5 PF00266.19 gi|347523242|ref|YP_004780812.1| - 2.1e-33 115.8 0.0 2.8e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|347523242|ref|YP_004780812.1| - 0.00047 18.8 0.0 0.00067 18.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|347523242|ref|YP_004780812.1| - 0.0023 17.2 0.0 0.0035 16.6 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II HTH_Crp_2 PF13545.6 gi|347523243|ref|YP_004780813.1| - 0.018 15.0 0.2 0.035 14.1 0.2 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ResIII PF04851.15 gi|347523244|ref|YP_004780814.1| - 4.1e-17 62.7 0.0 6.2e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|347523244|ref|YP_004780814.1| - 1e-14 54.7 0.0 1.9e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|347523244|ref|YP_004780814.1| - 1.7e-12 47.7 0.0 4.4e-12 46.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|347523244|ref|YP_004780814.1| - 3.5e-06 26.4 0.0 5.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase TrmB PF01978.19 gi|347523244|ref|YP_004780814.1| - 0.00088 19.1 0.0 0.0035 17.2 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|347523244|ref|YP_004780814.1| - 0.0022 18.0 2.7 0.32 10.9 0.1 3.4 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF977) AAA_11 PF13086.6 gi|347523244|ref|YP_004780814.1| - 0.0078 16.0 0.2 0.95 9.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|347523244|ref|YP_004780814.1| - 0.012 15.4 0.1 0.028 14.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain MarR_2 PF12802.7 gi|347523244|ref|YP_004780814.1| - 0.039 13.8 3.4 0.25 11.3 0.0 3.3 3 0 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 gi|347523244|ref|YP_004780814.1| - 0.053 13.5 0.0 0.25 11.4 0.0 2.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DNA_alkylation PF08713.11 gi|347523244|ref|YP_004780814.1| - 0.075 12.7 0.2 0.15 11.8 0.2 1.4 1 0 0 1 1 1 0 DNA alkylation repair enzyme PhoH PF02562.16 gi|347523244|ref|YP_004780814.1| - 0.084 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DprA_WH PF17782.1 gi|347523244|ref|YP_004780814.1| - 0.093 12.9 0.1 0.31 11.2 0.1 1.9 1 0 0 1 1 1 0 DprA winged helix domain Helicase_RecD PF05127.14 gi|347523244|ref|YP_004780814.1| - 0.094 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Helicase Sulfolobus_pRN PF05584.11 gi|347523244|ref|YP_004780814.1| - 0.11 12.5 0.0 0.33 11.0 0.0 1.8 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein AAA_34 PF13872.6 gi|347523244|ref|YP_004780814.1| - 0.6 8.9 2.1 2.6 6.8 0.6 2.5 2 1 0 2 2 2 0 P-loop containing NTP hydrolase pore-1 cobW PF02492.19 gi|347523246|ref|YP_004780816.1| - 4.7e-25 88.2 0.0 6e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|347523246|ref|YP_004780816.1| - 6.5e-07 28.6 0.7 1.5e-05 24.1 0.7 2.2 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|347523246|ref|YP_004780816.1| - 0.00081 19.3 0.0 0.42 10.5 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase FeoB_N PF02421.18 gi|347523246|ref|YP_004780816.1| - 0.0035 16.9 0.1 0.18 11.3 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_19 PF13245.6 gi|347523246|ref|YP_004780816.1| - 0.0051 17.2 0.0 0.0056 17.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347523246|ref|YP_004780816.1| - 0.0091 16.4 0.0 0.024 15.0 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain GTP_EFTU PF00009.27 gi|347523246|ref|YP_004780816.1| - 0.11 12.0 0.3 8.1 5.9 0.1 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain MobB PF03205.14 gi|347523246|ref|YP_004780816.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UvrD-helicase PF00580.21 gi|347523246|ref|YP_004780816.1| - 0.25 10.8 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AIRS_C PF02769.22 gi|347523247|ref|YP_004780817.1| - 1.9e-26 93.0 0.3 2.8e-26 92.5 0.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|347523247|ref|YP_004780817.1| - 3.2e-14 53.3 1.3 4.4e-14 52.9 0.3 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain OB_aCoA_assoc PF01796.17 gi|347523248|ref|YP_004780818.1| - 2.2e-12 46.8 0.2 3.2e-12 46.2 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|347523248|ref|YP_004780818.1| - 1.3e-11 44.1 4.0 2.1e-11 43.5 4.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|347523248|ref|YP_004780818.1| - 0.0053 16.8 0.1 0.0086 16.1 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|347523248|ref|YP_004780818.1| - 0.011 15.6 0.5 0.011 15.6 0.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TLP1_add_C PF18313.1 gi|347523248|ref|YP_004780818.1| - 0.036 14.0 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Thiolase-like protein type 1 additional C-terminal domain Zn-ribbon_8 PF09723.10 gi|347523248|ref|YP_004780818.1| - 0.13 12.4 4.9 0.29 11.3 4.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|347523248|ref|YP_004780818.1| - 0.16 11.9 1.0 7.7 6.5 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|347523248|ref|YP_004780818.1| - 0.79 9.2 5.0 1.3 8.6 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|347523248|ref|YP_004780818.1| - 1.3 8.8 4.9 3.8 7.3 4.9 1.7 1 1 0 1 1 1 0 Rubredoxin metal binding domain DNA_RNApol_7kD PF03604.13 gi|347523248|ref|YP_004780818.1| - 1.4 8.7 5.3 47 3.8 5.3 2.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|347523248|ref|YP_004780818.1| - 3.2 7.7 4.2 7.2 6.6 0.2 2.4 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Ham1p_like PF01725.16 gi|347523249|ref|YP_004780819.1| - 9.6e-46 156.1 0.0 1.1e-45 155.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family ArgJ PF01960.18 gi|347523250|ref|YP_004780820.1| - 0.014 14.2 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 ArgJ family Amidase PF01425.21 gi|347523250|ref|YP_004780820.1| - 0.059 12.3 0.1 0.097 11.6 0.0 1.4 1 1 0 1 1 1 0 Amidase DUF2007 PF09413.10 gi|347523250|ref|YP_004780820.1| - 0.11 12.6 0.1 3.6 7.8 0.0 2.5 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein DUF4208 PF13907.6 gi|347523250|ref|YP_004780820.1| - 0.15 12.5 0.0 12 6.4 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4208) CitT PF12431.8 gi|347523250|ref|YP_004780820.1| - 0.17 12.3 0.0 0.43 11.0 0.0 1.8 1 1 0 1 1 1 0 Transcriptional regulator FecCD PF01032.18 gi|347523251|ref|YP_004780821.1| - 1.1e-54 185.5 39.9 1.4e-54 185.2 39.9 1.0 1 0 0 1 1 1 1 FecCD transport family DUF2418 PF10332.9 gi|347523251|ref|YP_004780821.1| - 0.14 12.7 0.4 0.74 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) Peripla_BP_2 PF01497.18 gi|347523252|ref|YP_004780822.1| - 2.4e-24 86.2 0.8 4.2e-24 85.4 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein MTHFR PF02219.17 gi|347523252|ref|YP_004780822.1| - 0.28 10.5 1.6 0.43 9.9 1.6 1.3 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase RHH_1 PF01402.21 gi|347523253|ref|YP_004780823.1| - 0.00055 19.8 0.6 0.00095 19.0 0.6 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|347523253|ref|YP_004780823.1| - 0.0029 17.5 0.1 0.004 17.1 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain Cys_Met_Meta_PP PF01053.20 gi|347523254|ref|YP_004780824.1| - 3.2e-120 401.2 0.0 3.5e-120 401.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|347523254|ref|YP_004780824.1| - 3.2e-07 29.9 0.0 6.7e-07 28.8 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|347523254|ref|YP_004780824.1| - 4.6e-07 29.1 0.0 1.6e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|347523254|ref|YP_004780824.1| - 2.4e-05 23.8 0.0 0.00025 20.5 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|347523254|ref|YP_004780824.1| - 0.00067 18.3 0.1 0.012 14.1 0.1 2.0 1 1 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 gi|347523254|ref|YP_004780824.1| - 0.0088 15.4 0.0 0.059 12.7 0.0 1.9 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family GHMP_kinases_N PF00288.26 gi|347523255|ref|YP_004780825.1| - 7.8e-12 45.3 0.7 1.9e-11 44.0 0.7 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|347523255|ref|YP_004780825.1| - 1.7e-09 37.9 0.1 1.7e-09 37.9 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal Pribosyltran_N PF13793.6 gi|347523256|ref|YP_004780826.1| - 3.9e-26 91.3 0.0 2.6e-24 85.4 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|347523256|ref|YP_004780826.1| - 2.2e-24 85.8 1.5 4.8e-24 84.7 0.3 2.0 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|347523256|ref|YP_004780826.1| - 3.1e-12 46.9 0.8 5.7e-10 39.5 0.1 3.1 3 0 0 3 3 3 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|347523256|ref|YP_004780826.1| - 3.1e-06 26.8 0.1 1.4e-05 24.6 0.0 2.0 3 0 0 3 3 3 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|347523256|ref|YP_004780826.1| - 0.00076 19.0 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase CCB2_CCB4 PF11152.8 gi|347523257|ref|YP_004780827.1| - 0.055 12.8 0.1 0.087 12.1 0.1 1.5 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 Lactamase_B PF00753.27 gi|347523258|ref|YP_004780828.1| - 2.5e-22 79.9 1.1 3.7e-22 79.3 1.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|347523258|ref|YP_004780828.1| - 0.00035 20.1 0.1 0.00056 19.5 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|347523258|ref|YP_004780828.1| - 0.053 13.4 0.1 0.097 12.6 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Roughex PF06020.11 gi|347523258|ref|YP_004780828.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Drosophila roughex protein TPP_enzyme_C PF02775.21 gi|347523259|ref|YP_004780829.1| - 1.5e-26 93.1 0.1 2.1e-26 92.6 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Glyco_transf_4 PF13439.6 gi|347523259|ref|YP_004780829.1| - 0.057 13.4 0.1 0.34 10.9 0.0 2.1 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|347523259|ref|YP_004780829.1| - 0.09 13.2 0.3 0.49 10.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Nefa_Nip30_N PF10187.9 gi|347523259|ref|YP_004780829.1| - 0.2 12.0 0.1 0.31 11.4 0.1 1.2 1 0 0 1 1 1 0 N-terminal domain of NEFA-interacting nuclear protein NIP30 POR_N PF01855.19 gi|347523260|ref|YP_004780830.1| - 1.1e-72 244.6 0.5 1.4e-72 244.2 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|347523260|ref|YP_004780830.1| - 9e-27 93.4 0.4 2.3e-26 92.0 0.4 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|347523260|ref|YP_004780830.1| - 0.00052 19.9 0.1 0.0014 18.5 0.1 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|347523261|ref|YP_004780831.1| - 2e-14 52.7 14.3 1.1e-07 31.4 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347523261|ref|YP_004780831.1| - 8.7e-12 45.0 8.0 1.2e-11 44.5 8.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347523261|ref|YP_004780831.1| - 1.6e-10 41.4 33.9 9.8e-07 29.3 12.8 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523261|ref|YP_004780831.1| - 1.3e-08 34.8 21.4 1.2e-07 31.7 10.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347523261|ref|YP_004780831.1| - 2e-08 34.2 6.5 0.0011 19.1 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523261|ref|YP_004780831.1| - 2.4e-08 34.8 9.7 0.00098 20.0 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|347523261|ref|YP_004780831.1| - 5.4e-08 32.5 11.9 0.00035 20.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347523261|ref|YP_004780831.1| - 9.8e-08 31.8 15.6 0.00042 20.3 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|347523261|ref|YP_004780831.1| - 0.0001 22.8 11.2 0.0029 18.1 1.2 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|347523261|ref|YP_004780831.1| - 0.00012 22.3 12.5 0.0031 17.9 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347523261|ref|YP_004780831.1| - 0.00025 21.4 10.0 0.00043 20.7 10.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|347523261|ref|YP_004780831.1| - 0.002 19.0 10.6 0.021 15.7 2.2 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|347523261|ref|YP_004780831.1| - 0.007 17.1 12.0 0.59 10.9 3.8 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|347523261|ref|YP_004780831.1| - 0.013 16.0 12.0 0.13 12.9 12.1 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain tRNA-synt_1 PF00133.22 gi|347523261|ref|YP_004780831.1| - 0.026 12.8 0.0 0.031 12.6 0.0 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) ETF_QO PF05187.13 gi|347523261|ref|YP_004780831.1| - 3 8.0 7.4 3.3 7.9 0.8 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR PF01558.18 gi|347523262|ref|YP_004780832.1| - 5.9e-40 137.2 0.0 6.9e-40 137.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase ParBc PF02195.18 gi|347523262|ref|YP_004780832.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 ParB-like nuclease domain Aminotran_5 PF00266.19 gi|347523263|ref|YP_004780833.1| - 1.7e-132 441.9 0.0 1.9e-132 441.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|347523263|ref|YP_004780833.1| - 2.3e-10 40.3 0.4 3.5e-10 39.7 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|347523263|ref|YP_004780833.1| - 8e-09 34.5 0.0 1.7e-08 33.4 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|347523263|ref|YP_004780833.1| - 2.8e-08 33.4 0.0 3.6e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|347523263|ref|YP_004780833.1| - 6.1e-08 32.2 0.0 7.8e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|347523263|ref|YP_004780833.1| - 0.00034 19.4 0.0 0.0015 17.3 0.0 1.8 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|347523263|ref|YP_004780833.1| - 0.039 13.0 0.1 0.13 11.3 0.1 1.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase SepSecS PF05889.13 gi|347523263|ref|YP_004780833.1| - 0.078 11.6 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS OKR_DC_1 PF01276.20 gi|347523263|ref|YP_004780833.1| - 0.21 10.3 0.2 0.38 9.4 0.2 1.5 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF998 PF06197.13 gi|347523264|ref|YP_004780834.1| - 6.9e-09 35.6 22.3 1.2e-08 34.7 22.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF998) SirB PF04247.12 gi|347523264|ref|YP_004780834.1| - 0.54 10.4 6.6 11 6.1 6.6 2.3 1 1 0 1 1 1 0 Invasion gene expression up-regulator, SirB Metallophos_2 PF12850.7 gi|347523265|ref|YP_004780835.1| - 3.2e-12 46.9 0.0 1.5e-11 44.8 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|347523265|ref|YP_004780835.1| - 1e-08 35.9 0.0 1.5e-08 35.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase ASCH PF04266.14 gi|347523266|ref|YP_004780836.1| - 0.0044 17.6 0.0 0.0082 16.7 0.0 1.6 1 1 0 1 1 1 1 ASCH domain TFIIB PF00382.19 gi|347523267|ref|YP_004780837.1| - 2.7e-32 110.6 5.9 2.3e-17 62.8 1.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|347523267|ref|YP_004780837.1| - 1.8e-07 30.5 0.1 2.9e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|347523267|ref|YP_004780837.1| - 1.3e-05 24.6 0.2 0.00015 21.2 0.3 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|347523267|ref|YP_004780837.1| - 0.00068 19.4 0.3 0.00068 19.4 0.3 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.19 gi|347523267|ref|YP_004780837.1| - 0.001 19.2 0.0 1.8 8.7 0.0 2.4 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|347523267|ref|YP_004780837.1| - 0.0027 17.1 0.1 0.04 13.3 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|347523267|ref|YP_004780837.1| - 0.0045 16.5 1.0 0.034 13.7 0.1 2.6 2 1 1 3 3 3 1 Bacterial regulatory proteins, luxR family RB_B PF01857.20 gi|347523267|ref|YP_004780837.1| - 0.0047 17.0 0.0 0.011 15.8 0.0 1.6 1 1 0 1 1 1 1 Retinoblastoma-associated protein B domain Sigma70_r4_2 PF08281.12 gi|347523267|ref|YP_004780837.1| - 0.0048 16.5 0.7 0.029 14.0 0.1 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|347523267|ref|YP_004780837.1| - 0.0091 16.0 0.0 1.1 9.3 0.0 2.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Pro_racemase PF05544.11 gi|347523267|ref|YP_004780837.1| - 0.013 14.5 0.0 0.027 13.5 0.0 1.5 2 0 0 2 2 2 0 Proline racemase HTH_11 PF08279.12 gi|347523267|ref|YP_004780837.1| - 0.033 14.2 0.2 0.31 11.0 0.1 2.5 2 0 0 2 2 2 0 HTH domain Fe-ADH PF00465.19 gi|347523267|ref|YP_004780837.1| - 0.043 12.6 0.3 0.083 11.7 0.3 1.4 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Rrf2 PF02082.20 gi|347523267|ref|YP_004780837.1| - 0.096 13.0 2.0 16 5.9 0.1 3.5 2 1 1 3 3 3 0 Transcriptional regulator Cyclin_N PF00134.23 gi|347523267|ref|YP_004780837.1| - 0.13 12.0 0.7 0.28 10.9 0.1 1.8 2 0 0 2 2 2 0 Cyclin, N-terminal domain HTH_23 PF13384.6 gi|347523267|ref|YP_004780837.1| - 0.15 11.9 2.9 0.16 11.8 0.1 2.5 2 1 0 2 2 2 0 Homeodomain-like domain HTH_36 PF13730.6 gi|347523267|ref|YP_004780837.1| - 0.36 10.8 2.0 10 6.2 0.1 3.3 4 0 0 4 4 4 0 Helix-turn-helix domain DUF484 PF04340.12 gi|347523267|ref|YP_004780837.1| - 0.81 9.3 4.3 1.2 8.8 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF484 SUI1 PF01253.22 gi|347523268|ref|YP_004780838.1| - 1.1e-22 80.3 0.1 1.4e-22 80.0 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|347523268|ref|YP_004780838.1| - 0.00079 19.7 0.1 0.0011 19.2 0.1 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DNA_RNApol_7kD PF03604.13 gi|347523269|ref|YP_004780839.1| - 2.6e-09 36.6 3.0 5.7e-09 35.5 3.0 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.18 gi|347523269|ref|YP_004780839.1| - 0.0079 16.0 0.8 1.5 8.7 0.1 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.11 gi|347523269|ref|YP_004780839.1| - 0.012 15.5 0.2 0.017 15.1 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|347523269|ref|YP_004780839.1| - 0.018 15.0 0.1 3.5 7.7 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|347523269|ref|YP_004780839.1| - 0.02 14.6 0.9 3.7 7.4 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|347523269|ref|YP_004780839.1| - 0.04 13.9 0.1 0.042 13.9 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YhfH PF14149.6 gi|347523269|ref|YP_004780839.1| - 0.052 13.5 1.0 7.7 6.6 0.1 2.4 2 0 0 2 2 2 0 YhfH-like protein C1_1 PF00130.22 gi|347523269|ref|YP_004780839.1| - 0.053 13.4 0.4 0.079 12.9 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RNHCP PF12647.7 gi|347523269|ref|YP_004780839.1| - 0.066 13.2 0.2 0.88 9.6 0.0 2.0 2 0 0 2 2 2 0 RNHCP domain zinc_ribbon_13 PF09855.9 gi|347523269|ref|YP_004780839.1| - 0.077 13.2 1.8 0.51 10.5 0.1 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.10 gi|347523269|ref|YP_004780839.1| - 0.098 12.8 1.5 0.23 11.6 1.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-ACC PF17848.1 gi|347523269|ref|YP_004780839.1| - 0.1 12.7 1.8 2.2 8.4 0.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-HIT PF04438.16 gi|347523269|ref|YP_004780839.1| - 0.12 12.3 2.9 2.3 8.1 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zf_UBZ PF18439.1 gi|347523269|ref|YP_004780839.1| - 0.2 11.3 0.7 0.76 9.4 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|347523269|ref|YP_004780839.1| - 0.22 11.3 1.6 5.7 6.7 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain PhnA_Zn_Ribbon PF08274.12 gi|347523269|ref|YP_004780839.1| - 0.23 11.4 2.4 1.3 9.1 0.1 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Arginase PF00491.21 gi|347523270|ref|YP_004780840.1| - 2.1e-65 221.0 0.1 2.4e-65 220.9 0.1 1.0 1 0 0 1 1 1 1 Arginase family PGDH_C PF16896.5 gi|347523270|ref|YP_004780840.1| - 0.082 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphogluconate dehydrogenase (decarboxylating) C-term DUF2175 PF09943.9 gi|347523271|ref|YP_004780841.1| - 2.3e-32 111.2 0.2 2.6e-32 111.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) DNA_pol3_beta PF00712.19 gi|347523271|ref|YP_004780841.1| - 0.037 14.1 0.1 0.053 13.7 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain Lant_dehydr_N PF04738.13 gi|347523271|ref|YP_004780841.1| - 0.069 11.2 0.2 0.084 11.0 0.2 1.0 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus ABC_tran PF00005.27 gi|347523273|ref|YP_004780843.1| - 7.2e-28 97.8 0.0 1.2e-27 97.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523273|ref|YP_004780843.1| - 4.2e-10 39.9 1.2 0.00026 20.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523273|ref|YP_004780843.1| - 8.6e-07 28.6 0.0 0.0018 17.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|347523273|ref|YP_004780843.1| - 0.00092 19.8 0.0 0.0013 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523273|ref|YP_004780843.1| - 0.0032 17.2 0.0 0.0056 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|347523273|ref|YP_004780843.1| - 0.051 14.0 0.0 1.1 9.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|347523273|ref|YP_004780843.1| - 0.052 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|347523273|ref|YP_004780843.1| - 0.066 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|347523273|ref|YP_004780843.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|347523276|ref|YP_004780846.1| - 4.5e-32 111.4 0.0 6.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523276|ref|YP_004780846.1| - 1.2e-14 54.9 2.7 1.9e-06 27.9 0.6 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523276|ref|YP_004780846.1| - 7.2e-07 28.9 0.1 3.2e-06 26.8 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|347523276|ref|YP_004780846.1| - 1e-05 26.0 0.1 3.6e-05 24.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523276|ref|YP_004780846.1| - 6.9e-05 23.1 0.5 0.002 18.4 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|347523276|ref|YP_004780846.1| - 0.00015 22.3 1.5 0.00016 22.2 0.3 1.6 2 0 0 2 2 2 1 AAA domain Dynamin_N PF00350.23 gi|347523276|ref|YP_004780846.1| - 0.00017 21.7 0.0 0.0003 20.9 0.0 1.4 1 1 0 1 1 1 1 Dynamin family AAA_29 PF13555.6 gi|347523276|ref|YP_004780846.1| - 0.00038 20.2 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|347523276|ref|YP_004780846.1| - 0.00067 19.5 0.3 0.0033 17.2 0.2 1.8 1 1 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|347523276|ref|YP_004780846.1| - 0.00082 19.6 0.1 0.014 15.6 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|347523276|ref|YP_004780846.1| - 0.0014 18.4 0.2 0.021 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|347523276|ref|YP_004780846.1| - 0.0022 18.1 0.2 0.0075 16.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|347523276|ref|YP_004780846.1| - 0.0053 15.6 0.1 0.44 9.3 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|347523276|ref|YP_004780846.1| - 0.0057 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Guanylate_kin PF00625.21 gi|347523276|ref|YP_004780846.1| - 0.0088 15.7 0.2 0.02 14.6 0.0 1.6 2 0 0 2 2 2 1 Guanylate kinase NACHT PF05729.12 gi|347523276|ref|YP_004780846.1| - 0.0099 15.8 0.1 0.023 14.6 0.1 1.6 1 0 0 1 1 1 1 NACHT domain ATPase_2 PF01637.18 gi|347523276|ref|YP_004780846.1| - 0.013 15.4 0.1 0.025 14.5 0.1 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|347523276|ref|YP_004780846.1| - 0.016 15.2 0.1 0.11 12.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|347523276|ref|YP_004780846.1| - 0.02 14.9 0.1 0.052 13.6 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|347523276|ref|YP_004780846.1| - 0.021 14.4 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.7 gi|347523276|ref|YP_004780846.1| - 0.028 13.3 0.1 0.051 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA-like domain RsgA_GTPase PF03193.16 gi|347523276|ref|YP_004780846.1| - 0.028 14.3 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|347523276|ref|YP_004780846.1| - 0.042 13.0 0.3 0.092 11.9 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.6 gi|347523276|ref|YP_004780846.1| - 0.042 13.6 0.3 0.31 10.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_35 PF14516.6 gi|347523276|ref|YP_004780846.1| - 0.043 12.7 0.0 1.1 8.0 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain T2SSE PF00437.20 gi|347523276|ref|YP_004780846.1| - 0.045 12.8 0.1 0.081 12.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|347523276|ref|YP_004780846.1| - 0.05 13.6 0.2 0.49 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|347523276|ref|YP_004780846.1| - 0.06 12.9 0.4 0.45 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|347523276|ref|YP_004780846.1| - 0.068 13.6 0.3 0.73 10.3 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Septin PF00735.18 gi|347523276|ref|YP_004780846.1| - 0.17 11.2 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_13 PF13166.6 gi|347523276|ref|YP_004780846.1| - 0.37 9.4 0.2 2 6.9 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|347523276|ref|YP_004780846.1| - 0.43 10.8 0.2 0.43 10.8 0.2 2.0 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|347523277|ref|YP_004780847.1| - 7.4e-29 101.0 0.0 9.6e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523277|ref|YP_004780847.1| - 4e-10 40.0 0.3 3.6e-05 23.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|347523277|ref|YP_004780847.1| - 3.9e-07 29.9 0.9 7.6e-07 28.9 0.9 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|347523277|ref|YP_004780847.1| - 0.00054 20.5 0.1 0.00076 20.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523277|ref|YP_004780847.1| - 0.0016 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|347523277|ref|YP_004780847.1| - 0.011 15.1 0.1 0.089 12.2 0.1 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|347523277|ref|YP_004780847.1| - 0.053 13.9 0.0 0.093 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|347523277|ref|YP_004780847.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|347523277|ref|YP_004780847.1| - 0.073 12.6 0.0 2.5 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|347523277|ref|YP_004780847.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|347523277|ref|YP_004780847.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|347523277|ref|YP_004780847.1| - 0.15 12.1 0.0 0.47 10.5 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|347523277|ref|YP_004780847.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|347523277|ref|YP_004780847.1| - 0.16 11.1 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|347523277|ref|YP_004780847.1| - 0.17 12.2 0.1 1.4 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|347523277|ref|YP_004780847.1| - 0.23 11.1 0.0 0.62 9.7 0.1 1.6 2 0 0 2 2 2 0 AAA ATPase domain KAP_NTPase PF07693.14 gi|347523277|ref|YP_004780847.1| - 0.26 10.5 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain BPD_transp_2 PF02653.16 gi|347523278|ref|YP_004780848.1| - 2.7e-44 151.3 39.2 6.3e-44 150.2 39.2 1.5 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|347523279|ref|YP_004780849.1| - 3.3e-24 85.5 42.7 4.1e-24 85.2 42.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|347523280|ref|YP_004780850.1| - 3.3e-40 138.8 7.2 7.3e-34 117.9 0.4 2.0 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|347523280|ref|YP_004780850.1| - 1.2e-25 90.4 0.0 2.3e-22 79.6 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|347523280|ref|YP_004780850.1| - 4e-09 35.9 0.1 1.2e-06 27.7 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain LppC PF04348.13 gi|347523280|ref|YP_004780850.1| - 0.0013 17.6 0.0 0.003 16.4 0.0 1.5 1 1 0 1 1 1 1 LppC putative lipoprotein OppC_N PF12911.7 gi|347523280|ref|YP_004780850.1| - 0.07 13.1 0.6 0.2 11.7 0.6 1.7 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C HypD PF01924.16 gi|347523281|ref|YP_004780851.1| - 3.2e-132 440.9 0.0 4e-132 440.6 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.6 gi|347523281|ref|YP_004780851.1| - 0.00036 20.3 0.0 0.00082 19.2 0.0 1.6 1 0 0 1 1 1 1 zf-RING of BARD1-type protein BPL_LplA_LipB PF03099.19 gi|347523282|ref|YP_004780852.1| - 3.2e-15 56.2 0.0 7.7e-15 55.0 0.0 1.6 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|347523283|ref|YP_004780853.1| - 0.047 13.7 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus COPIIcoated_ERV PF07970.12 gi|347523285|ref|YP_004780855.1| - 0.044 13.6 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum vesicle transporter Ribosomal_L40e PF01020.17 gi|347523287|ref|YP_004780857.1| - 1e-07 31.7 4.0 1.2e-07 31.5 4.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.18 gi|347523287|ref|YP_004780857.1| - 0.0011 18.2 3.5 0.0014 17.9 3.5 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|347523287|ref|YP_004780857.1| - 0.0012 18.5 4.4 0.0016 18.1 4.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|347523287|ref|YP_004780857.1| - 0.0021 18.0 1.3 0.0028 17.6 1.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|347523287|ref|YP_004780857.1| - 0.0023 17.8 1.3 0.0028 17.5 1.3 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|347523287|ref|YP_004780857.1| - 0.0052 16.1 2.5 0.0072 15.7 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|347523287|ref|YP_004780857.1| - 0.026 14.5 0.3 0.027 14.5 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|347523287|ref|YP_004780857.1| - 0.11 12.1 1.6 9.4 5.8 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DHHC PF01529.20 gi|347523287|ref|YP_004780857.1| - 0.18 11.9 0.8 0.2 11.8 0.8 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase RNA_POL_M_15KD PF02150.16 gi|347523287|ref|YP_004780857.1| - 0.86 9.5 4.7 2.9 7.9 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit HTH_24 PF13412.6 gi|347523288|ref|YP_004780858.1| - 1.3e-09 37.4 0.1 2.3e-09 36.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|347523288|ref|YP_004780858.1| - 1.1e-06 28.4 0.1 2.8e-06 27.1 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|347523288|ref|YP_004780858.1| - 2.3e-06 27.3 1.2 5e-06 26.2 1.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|347523288|ref|YP_004780858.1| - 2.1e-05 24.2 0.1 4.2e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|347523288|ref|YP_004780858.1| - 0.00019 21.3 0.1 0.00037 20.4 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|347523288|ref|YP_004780858.1| - 0.00023 21.2 0.1 0.00053 20.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|347523288|ref|YP_004780858.1| - 0.0014 18.4 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|347523288|ref|YP_004780858.1| - 0.0018 18.2 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|347523288|ref|YP_004780858.1| - 0.0019 18.0 0.1 0.004 17.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_psq PF05225.16 gi|347523288|ref|YP_004780858.1| - 0.002 17.8 0.0 0.0052 16.5 0.0 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain Fe_dep_repress PF01325.19 gi|347523288|ref|YP_004780858.1| - 0.024 14.9 0.0 0.063 13.5 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|347523288|ref|YP_004780858.1| - 0.045 13.4 0.2 0.44 10.2 0.1 2.1 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_8 PF02954.19 gi|347523288|ref|YP_004780858.1| - 0.33 10.8 1.5 1.3 8.9 0.4 2.4 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family DUF4006 PF13179.6 gi|347523288|ref|YP_004780858.1| - 0.56 10.1 2.5 8.3 6.4 0.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF4006) FixQ PF05545.11 gi|347523288|ref|YP_004780858.1| - 1.2 9.1 3.0 1.1 9.3 0.1 2.1 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Tad PF13400.6 gi|347523288|ref|YP_004780858.1| - 1.9 8.9 9.3 10 6.5 2.8 2.7 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF515 PF04415.12 gi|347523288|ref|YP_004780858.1| - 3.8 5.8 5.3 6.9 4.9 5.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF515) NPV_P10 PF05531.12 gi|347523289|ref|YP_004780859.1| - 4.7e-08 33.4 10.5 0.0066 16.9 0.2 5.3 4 1 1 5 5 4 2 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|347523289|ref|YP_004780859.1| - 1.4e-06 26.8 27.2 0.00038 18.8 15.3 3.0 2 1 1 3 3 3 2 Septation ring formation regulator, EzrA Prominin PF05478.11 gi|347523289|ref|YP_004780859.1| - 4.6e-06 24.9 18.3 0.011 13.7 5.0 3.1 1 1 2 3 3 3 3 Prominin LPP PF04728.13 gi|347523289|ref|YP_004780859.1| - 5.4e-05 23.5 2.6 0.58 10.6 0.5 4.0 4 0 0 4 4 2 2 Lipoprotein leucine-zipper Laminin_I PF06008.14 gi|347523289|ref|YP_004780859.1| - 0.00031 20.6 39.3 0.0013 18.6 17.6 4.4 2 2 2 4 4 4 2 Laminin Domain I DUF3800 PF12686.7 gi|347523289|ref|YP_004780859.1| - 0.0005 20.7 0.0 0.57 10.8 0.0 3.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) Fib_alpha PF08702.10 gi|347523289|ref|YP_004780859.1| - 0.00075 19.7 11.3 0.13 12.5 1.4 3.2 2 1 0 2 2 2 2 Fibrinogen alpha/beta chain family DUF4618 PF15397.6 gi|347523289|ref|YP_004780859.1| - 0.00099 18.6 24.5 0.33 10.3 2.7 4.4 2 1 2 4 4 4 3 Domain of unknown function (DUF4618) Snapin_Pallidin PF14712.6 gi|347523289|ref|YP_004780859.1| - 0.0013 19.1 18.0 0.55 10.7 3.1 4.8 2 1 1 4 4 4 1 Snapin/Pallidin Nmad5 PF18757.1 gi|347523289|ref|YP_004780859.1| - 0.0019 18.4 6.0 0.0019 18.4 6.0 4.0 1 1 3 4 4 4 1 Nucleotide modification associated domain 5 TolA_bind_tri PF16331.5 gi|347523289|ref|YP_004780859.1| - 0.0024 17.9 22.0 0.022 14.9 3.7 4.5 5 2 1 6 6 3 2 TolA binding protein trimerisation Apolipoprotein PF01442.18 gi|347523289|ref|YP_004780859.1| - 0.0036 17.2 30.4 0.0036 17.2 30.4 4.2 1 1 1 2 2 1 1 Apolipoprotein A1/A4/E domain DASH_Dad4 PF08650.10 gi|347523289|ref|YP_004780859.1| - 0.0053 16.7 6.8 4.6 7.3 0.5 4.6 3 2 1 4 4 3 0 DASH complex subunit Dad4 Laminin_II PF06009.12 gi|347523289|ref|YP_004780859.1| - 0.0081 16.2 1.6 0.0081 16.2 1.6 5.4 3 3 3 6 6 6 1 Laminin Domain II PspA_IM30 PF04012.12 gi|347523289|ref|YP_004780859.1| - 0.0085 15.7 17.3 0.0085 15.7 17.3 5.8 2 1 4 6 6 5 2 PspA/IM30 family WXG100 PF06013.12 gi|347523289|ref|YP_004780859.1| - 0.0094 16.2 3.7 0.88 9.8 0.2 4.5 4 2 0 4 4 2 1 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.22 gi|347523289|ref|YP_004780859.1| - 0.011 16.0 5.0 0.011 16.0 5.0 5.7 2 1 2 5 5 4 0 Seryl-tRNA synthetase N-terminal domain ING PF12998.7 gi|347523289|ref|YP_004780859.1| - 0.013 16.0 19.5 0.027 15.1 6.5 4.2 4 1 1 5 5 3 0 Inhibitor of growth proteins N-terminal histone-binding DUF1664 PF07889.12 gi|347523289|ref|YP_004780859.1| - 0.014 15.4 18.2 0.048 13.7 1.4 4.6 3 1 2 5 5 4 0 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|347523289|ref|YP_004780859.1| - 0.014 15.2 11.1 10 6.1 0.0 5.0 3 1 1 4 4 4 0 Heat shock factor binding protein 1 Cytochrom_B562 PF07361.11 gi|347523289|ref|YP_004780859.1| - 0.015 16.0 20.2 0.39 11.4 3.6 5.1 2 2 2 4 4 3 0 Cytochrome b562 PhoU PF01895.19 gi|347523289|ref|YP_004780859.1| - 0.023 15.2 1.3 0.023 15.2 1.3 5.4 2 1 4 6 6 4 0 PhoU domain DUF3829 PF12889.7 gi|347523289|ref|YP_004780859.1| - 0.031 13.7 7.0 0.017 14.6 2.5 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3829) DUF713 PF05218.14 gi|347523289|ref|YP_004780859.1| - 0.055 13.2 6.2 0.067 12.9 1.0 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF713) Syntaxin_2 PF14523.6 gi|347523289|ref|YP_004780859.1| - 0.065 13.6 13.5 2.2 8.7 6.7 4.5 2 2 2 4 4 3 0 Syntaxin-like protein Baculo_PEP_C PF04513.12 gi|347523289|ref|YP_004780859.1| - 0.075 13.1 19.2 0.46 10.5 1.2 5.3 2 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.11 gi|347523289|ref|YP_004780859.1| - 0.079 13.4 22.1 0.22 11.9 4.1 5.9 4 2 2 6 6 5 0 Flagella accessory protein C (FlaC) Swi5 PF07061.11 gi|347523289|ref|YP_004780859.1| - 0.082 13.0 0.5 0.082 13.0 0.5 5.1 5 1 0 5 5 2 0 Swi5 TMPIT PF07851.13 gi|347523289|ref|YP_004780859.1| - 0.084 12.1 9.7 0.25 10.5 2.1 2.8 1 1 2 3 3 3 0 TMPIT-like protein Spc42p PF11544.8 gi|347523289|ref|YP_004780859.1| - 0.087 12.8 10.1 0.5 10.4 0.4 3.0 2 0 0 2 2 2 0 Spindle pole body component Spc42p ApoLp-III PF07464.11 gi|347523289|ref|YP_004780859.1| - 0.1 12.7 17.6 0.091 12.9 3.0 4.4 3 1 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) DUF883 PF05957.13 gi|347523289|ref|YP_004780859.1| - 0.13 12.9 46.7 0.16 12.6 3.8 7.1 3 2 3 7 7 6 0 Bacterial protein of unknown function (DUF883) TraF_2 PF13729.6 gi|347523289|ref|YP_004780859.1| - 0.13 11.6 6.1 4 6.7 0.1 3.6 3 2 1 4 4 4 0 F plasmid transfer operon, TraF, protein CelTOS PF18659.1 gi|347523289|ref|YP_004780859.1| - 0.15 12.5 8.6 0.087 13.3 1.4 3.5 3 0 0 3 3 3 0 Cell-traversal protein for ookinetes and sporozoites DUF1515 PF07439.11 gi|347523289|ref|YP_004780859.1| - 0.18 11.9 13.9 0.076 13.0 2.2 3.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1515) SpoOE-like PF09388.10 gi|347523289|ref|YP_004780859.1| - 0.18 11.7 21.8 0.75 9.7 0.2 6.0 4 2 1 5 5 5 0 Spo0E like sporulation regulatory protein ACP_PD PF04336.12 gi|347523289|ref|YP_004780859.1| - 0.19 12.1 7.7 0.65 10.4 0.6 4.8 2 2 4 6 6 3 0 Acyl carrier protein phosphodiesterase RPW8 PF05659.11 gi|347523289|ref|YP_004780859.1| - 0.19 11.4 22.7 0.44 10.2 1.5 4.9 2 2 3 5 5 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 BLOC1_2 PF10046.9 gi|347523289|ref|YP_004780859.1| - 0.21 11.9 26.6 0.15 12.4 2.1 5.4 4 2 2 6 6 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dam1 PF08653.10 gi|347523289|ref|YP_004780859.1| - 0.23 11.3 9.3 6.4 6.7 0.1 4.6 5 0 0 5 5 3 0 DASH complex subunit Dam1 MscS_porin PF12795.7 gi|347523289|ref|YP_004780859.1| - 0.25 10.9 37.6 0.25 10.9 10.8 4.5 1 1 4 5 5 5 0 Mechanosensitive ion channel porin domain Vps51 PF08700.11 gi|347523289|ref|YP_004780859.1| - 0.25 11.5 8.7 3.7 7.7 0.2 4.6 5 1 0 5 5 2 0 Vps51/Vps67 Lectin_N PF03954.14 gi|347523289|ref|YP_004780859.1| - 0.28 10.9 5.3 7.1 6.4 0.4 3.1 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain DUF5344 PF17279.2 gi|347523289|ref|YP_004780859.1| - 0.28 11.8 11.7 9.4 6.9 0.2 4.6 4 1 0 4 4 3 0 Family of unknown function (DUF5344) AI-2E_transport PF01594.16 gi|347523289|ref|YP_004780859.1| - 0.28 10.3 0.2 9.2 5.3 0.0 3.0 3 0 0 3 3 3 0 AI-2E family transporter Sipho_tail PF05709.11 gi|347523289|ref|YP_004780859.1| - 0.3 10.5 0.1 0.53 9.7 0.1 1.3 1 0 0 1 1 1 0 Phage tail protein FlxA PF14282.6 gi|347523289|ref|YP_004780859.1| - 0.34 10.9 6.8 2.9 7.9 0.6 3.1 4 0 0 4 4 2 0 FlxA-like protein YtxH PF12732.7 gi|347523289|ref|YP_004780859.1| - 0.36 11.4 15.4 6.8 7.3 1.2 5.8 1 1 2 3 3 3 0 YtxH-like protein DUF2433 PF10360.9 gi|347523289|ref|YP_004780859.1| - 0.37 10.9 2.9 2.4 8.3 0.3 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2433) Hemagglutinin PF00509.18 gi|347523289|ref|YP_004780859.1| - 0.38 9.1 5.5 0.29 9.5 1.0 2.2 1 1 0 2 2 2 0 Haemagglutinin FliD_C PF07195.12 gi|347523289|ref|YP_004780859.1| - 0.46 9.9 4.5 8.2 5.8 0.4 3.2 2 2 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus LMP PF04778.12 gi|347523289|ref|YP_004780859.1| - 0.56 10.1 6.7 0.35 10.8 2.9 2.7 2 1 0 2 2 2 0 LMP repeated region FapA PF03961.13 gi|347523289|ref|YP_004780859.1| - 0.65 8.5 25.7 0.42 9.2 5.6 3.5 1 1 2 3 3 3 0 Flagellar Assembly Protein A YojJ PF10372.9 gi|347523289|ref|YP_004780859.1| - 0.73 10.0 13.5 3.2 7.9 0.3 5.0 3 2 1 4 4 3 0 Bacterial membrane-spanning protein N-terminus IL34 PF15036.6 gi|347523289|ref|YP_004780859.1| - 0.79 9.8 12.6 1 9.4 1.1 3.6 2 1 3 5 5 3 0 Interleukin 34 PHM7_cyt PF14703.6 gi|347523289|ref|YP_004780859.1| - 0.79 9.9 20.9 0.36 11.0 4.5 4.4 1 1 2 3 3 3 0 Cytosolic domain of 10TM putative phosphate transporter Bacillus_HBL PF05791.11 gi|347523289|ref|YP_004780859.1| - 1.1 9.1 6.8 2.1 8.1 1.2 2.7 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF5082 PF16888.5 gi|347523289|ref|YP_004780859.1| - 1.4 9.2 17.8 2.5 8.4 8.0 3.8 2 2 1 3 3 2 0 Domain of unknown function (DUF5082) Csm1_N PF18504.1 gi|347523289|ref|YP_004780859.1| - 1.6 9.2 18.8 12 6.3 1.0 5.4 2 2 1 4 4 4 0 Csm1 N-terminal domain IFP_35_N PF07334.13 gi|347523289|ref|YP_004780859.1| - 1.9 8.6 7.3 4.6 7.4 2.6 2.9 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Sec34 PF04136.15 gi|347523289|ref|YP_004780859.1| - 2 8.3 23.1 5.7 6.8 6.7 5.8 5 1 0 5 5 4 0 Sec34-like family Rx_N PF18052.1 gi|347523289|ref|YP_004780859.1| - 2 8.7 38.8 1.6 9.0 4.3 5.2 3 2 2 5 5 4 0 Rx N-terminal domain FemAB PF02388.16 gi|347523289|ref|YP_004780859.1| - 2.1 7.1 9.4 1.6 7.6 2.2 2.5 2 0 0 2 2 2 0 FemAB family BAR_2 PF10455.9 gi|347523289|ref|YP_004780859.1| - 2.5 7.2 23.2 0.097 11.8 8.6 2.9 1 1 2 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking OmpH PF03938.14 gi|347523289|ref|YP_004780859.1| - 2.5 8.4 26.8 0.17 12.2 8.2 3.9 2 1 2 4 4 2 0 Outer membrane protein (OmpH-like) MtrG PF04210.13 gi|347523289|ref|YP_004780859.1| - 2.9 7.8 7.0 0.94 9.4 0.3 3.5 3 2 0 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Phasin PF05597.11 gi|347523289|ref|YP_004780859.1| - 3 7.9 31.7 2.4 8.2 0.4 5.9 2 2 4 6 6 6 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PhaP_Bmeg PF09602.10 gi|347523289|ref|YP_004780859.1| - 3 7.7 11.7 8.7 6.2 3.3 3.5 2 2 1 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF4265 PF14085.6 gi|347523289|ref|YP_004780859.1| - 3.2 7.8 7.6 4.7 7.2 0.2 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4265) PIN_8 PF18476.1 gi|347523289|ref|YP_004780859.1| - 3.5 7.4 23.3 0.44 10.4 0.2 4.7 1 1 3 5 5 5 0 PIN like domain HCMV_UL139 PF12507.8 gi|347523289|ref|YP_004780859.1| - 4 7.8 9.0 2e+02 2.4 9.0 2.9 1 1 0 1 1 1 0 Human Cytomegalovirus UL139 protein ACCA PF03255.14 gi|347523289|ref|YP_004780859.1| - 4.3 7.2 11.8 12 5.8 1.0 3.6 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Exonuc_VII_L PF02601.15 gi|347523289|ref|YP_004780859.1| - 4.8 6.7 30.6 3.8 7.0 8.9 3.3 1 1 2 3 3 3 0 Exonuclease VII, large subunit Lipoprotein_20 PF13942.6 gi|347523289|ref|YP_004780859.1| - 4.8 7.1 17.1 0.4 10.6 1.9 3.4 2 1 1 3 3 3 0 YfhG lipoprotein DASH_Dad3 PF08656.10 gi|347523289|ref|YP_004780859.1| - 5 7.3 17.1 12 6.1 1.8 4.6 2 2 1 3 3 3 0 DASH complex subunit Dad3 DUF2203 PF09969.9 gi|347523289|ref|YP_004780859.1| - 5.9 7.6 36.9 1.8 9.3 2.6 5.8 2 2 4 6 6 6 0 Uncharacterized conserved protein (DUF2203) MutS_IV PF05190.18 gi|347523289|ref|YP_004780859.1| - 5.9 7.3 19.9 0.78 10.1 1.1 4.9 4 2 0 4 4 3 0 MutS family domain IV HTH_15 PF12324.8 gi|347523289|ref|YP_004780859.1| - 6 6.9 7.4 0.74 9.8 0.1 3.5 4 0 0 4 4 1 0 Helix-turn-helix domain of alkylmercury lyase Phage_Mu_Gam PF07352.12 gi|347523289|ref|YP_004780859.1| - 7 6.5 22.9 0.51 10.2 3.1 4.4 4 2 0 4 4 3 0 Bacteriophage Mu Gam like protein Occludin_ELL PF07303.13 gi|347523289|ref|YP_004780859.1| - 7.1 7.4 15.1 7.8 7.3 1.7 4.3 3 2 2 5 5 4 0 Occludin homology domain UPF0242 PF06785.11 gi|347523289|ref|YP_004780859.1| - 7.1 6.7 34.9 1.9 8.6 10.1 4.0 3 2 1 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus KxDL PF10241.9 gi|347523289|ref|YP_004780859.1| - 7.4 6.9 13.7 2.6 8.4 1.5 4.7 1 1 3 4 4 4 0 Uncharacterized conserved protein Med9 PF07544.13 gi|347523289|ref|YP_004780859.1| - 8.2 6.6 23.3 9.7 6.4 5.2 4.7 2 2 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 DUF16 PF01519.16 gi|347523289|ref|YP_004780859.1| - 8.3 7.0 25.1 2.5 8.6 1.7 5.1 3 1 2 5 5 4 0 Protein of unknown function DUF16 Succ_DH_flav_C PF02910.20 gi|347523289|ref|YP_004780859.1| - 8.4 6.4 13.9 4.4 7.3 1.0 4.2 4 1 1 5 5 4 0 Fumarate reductase flavoprotein C-term Synaptobrevin PF00957.21 gi|347523289|ref|YP_004780859.1| - 8.7 6.2 9.7 1.2 9.0 0.8 3.6 3 2 1 4 4 4 0 Synaptobrevin COMM_domain PF07258.14 gi|347523289|ref|YP_004780859.1| - 9 6.5 7.1 9.8 6.4 1.9 3.3 2 1 1 3 3 3 0 COMM domain SKA2 PF16740.5 gi|347523289|ref|YP_004780859.1| - 9.4 6.1 26.5 3.2 7.6 9.6 5.9 1 1 4 6 6 5 0 Spindle and kinetochore-associated protein 2 TF_Zn_Ribbon PF08271.12 gi|347523290|ref|YP_004780860.1| - 0.0061 16.1 0.6 0.0086 15.6 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|347523290|ref|YP_004780860.1| - 0.08 13.3 0.2 0.11 12.9 0.2 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|347523290|ref|YP_004780860.1| - 0.34 11.0 3.3 0.61 10.2 0.2 2.4 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain RimK PF08443.11 gi|347523291|ref|YP_004780861.1| - 5.4e-33 114.2 0.0 7e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|347523291|ref|YP_004780861.1| - 3.7e-08 33.6 0.0 5.4e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|347523291|ref|YP_004780861.1| - 6.8e-08 32.3 0.0 1.3e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|347523291|ref|YP_004780861.1| - 1.2e-07 31.5 0.0 2.5e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|347523291|ref|YP_004780861.1| - 1.3e-07 31.1 0.0 0.011 15.0 0.0 2.6 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|347523291|ref|YP_004780861.1| - 1.8e-07 30.7 0.0 3.1e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|347523291|ref|YP_004780861.1| - 8e-06 25.5 0.0 0.00011 21.8 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.6 gi|347523291|ref|YP_004780861.1| - 6.7e-05 22.4 0.0 0.00021 20.9 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|347523291|ref|YP_004780861.1| - 0.0045 16.6 0.0 0.0077 15.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Rimk_N PF18030.1 gi|347523291|ref|YP_004780861.1| - 0.0084 16.5 0.0 0.029 14.7 0.0 1.9 1 1 0 1 1 1 1 RimK PreATP-grasp domain ATP-grasp_4 PF13535.6 gi|347523291|ref|YP_004780861.1| - 0.034 13.7 0.0 0.065 12.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain SIS PF01380.22 gi|347523293|ref|YP_004780863.1| - 6.1e-11 42.3 0.1 1.2e-08 34.9 0.0 2.6 3 0 0 3 3 3 2 SIS domain SIS_2 PF13580.6 gi|347523293|ref|YP_004780863.1| - 0.0038 17.2 0.1 0.014 15.4 0.0 1.9 1 1 0 2 2 2 1 SIS domain HAD_2 PF13419.6 gi|347523294|ref|YP_004780864.1| - 2.4e-15 57.1 0.0 3.2e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|347523294|ref|YP_004780864.1| - 7.3e-10 39.5 0.0 2.4e-09 37.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|347523294|ref|YP_004780864.1| - 1.2e-05 25.8 0.1 1.8e-05 25.3 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|347523294|ref|YP_004780864.1| - 0.00018 21.5 0.1 0.00059 19.8 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|347523294|ref|YP_004780864.1| - 0.011 15.8 0.0 1.8 8.7 0.0 2.6 1 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase SpoU_sub_bind PF08032.12 gi|347523294|ref|YP_004780864.1| - 0.059 13.7 0.0 3.9 7.8 0.0 2.3 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding DUF4392 PF14336.6 gi|347523294|ref|YP_004780864.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4392) Aconitase_C PF00694.19 gi|347523295|ref|YP_004780865.1| - 3.6e-21 75.9 0.0 4.2e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain IlvN PF07991.12 gi|347523295|ref|YP_004780865.1| - 0.04 13.5 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Molybdopterin PF00384.22 gi|347523296|ref|YP_004780866.1| - 6.5e-45 153.9 0.0 8e-45 153.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|347523296|ref|YP_004780866.1| - 0.00024 21.0 5.2 0.0018 18.2 5.2 2.2 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|347523296|ref|YP_004780866.1| - 0.00051 20.0 0.0 0.0017 18.4 0.0 1.9 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF1205 PF06722.12 gi|347523296|ref|YP_004780866.1| - 0.19 11.8 0.7 52 4.0 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1205) Ribosomal_S24e PF01282.19 gi|347523298|ref|YP_004780868.1| - 2e-23 82.1 0.0 2.6e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e RNA_helicase PF00910.22 gi|347523298|ref|YP_004780868.1| - 0.025 15.0 0.0 0.033 14.6 0.0 1.2 1 0 0 1 1 1 0 RNA helicase OsmC PF02566.19 gi|347523298|ref|YP_004780868.1| - 0.085 13.4 0.0 4.1 8.0 0.0 2.1 1 1 1 2 2 2 0 OsmC-like protein Ribosomal_S27 PF01599.19 gi|347523299|ref|YP_004780869.1| - 1.9e-09 37.6 3.4 3.7e-09 36.6 3.4 1.6 1 1 0 1 1 1 1 Ribosomal protein S27a PriA_CRR PF18319.1 gi|347523299|ref|YP_004780869.1| - 0.0058 16.6 3.0 0.024 14.6 3.0 2.1 1 1 0 1 1 1 1 PriA DNA helicase Cys-rich region (CRR) domain Zn_Tnp_IS1595 PF12760.7 gi|347523299|ref|YP_004780869.1| - 0.011 15.7 5.4 0.016 15.1 5.4 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347523299|ref|YP_004780869.1| - 0.02 14.8 1.9 0.03 14.2 1.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.19 gi|347523299|ref|YP_004780869.1| - 0.025 14.7 0.9 0.03 14.4 0.9 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF1451 PF07295.11 gi|347523299|ref|YP_004780869.1| - 0.031 14.3 0.3 0.031 14.3 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-ISL3 PF14690.6 gi|347523299|ref|YP_004780869.1| - 0.032 14.9 5.1 1.8 9.3 0.3 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Gmx_para_CXXCG PF09535.10 gi|347523299|ref|YP_004780869.1| - 0.033 13.5 0.3 0.042 13.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (Gmx_para_CXXCG) zf-ribbon_3 PF13248.6 gi|347523299|ref|YP_004780869.1| - 0.047 13.1 5.2 0.13 11.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|347523299|ref|YP_004780869.1| - 0.053 13.7 6.3 0.43 10.7 2.4 2.5 2 1 0 2 2 2 0 Zinc ribbon domain YhfH PF14149.6 gi|347523299|ref|YP_004780869.1| - 0.067 13.2 3.2 0.61 10.1 0.2 2.3 2 0 0 2 2 2 0 YhfH-like protein DUF35_N PF12172.8 gi|347523299|ref|YP_004780869.1| - 0.1 12.5 3.6 2.9 7.9 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TFIIS_C PF01096.18 gi|347523299|ref|YP_004780869.1| - 0.11 12.4 3.8 5.1 7.0 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_recom PF13408.6 gi|347523299|ref|YP_004780869.1| - 0.13 12.8 5.3 0.43 11.1 5.3 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.10 gi|347523299|ref|YP_004780869.1| - 0.16 11.7 3.5 5.4 6.9 0.5 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|347523299|ref|YP_004780869.1| - 0.19 11.3 2.3 1 9.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|347523299|ref|YP_004780869.1| - 0.2 11.6 3.7 1 9.3 3.7 2.0 1 1 0 1 1 1 0 Nudix N-terminal Mu-like_Com PF10122.9 gi|347523299|ref|YP_004780869.1| - 0.26 10.8 2.4 0.55 9.7 0.1 2.0 2 0 0 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_13 PF09855.9 gi|347523299|ref|YP_004780869.1| - 0.32 11.2 2.1 2.3 8.4 0.2 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-NADH-PPase PF09297.11 gi|347523299|ref|YP_004780869.1| - 0.4 10.4 5.8 5.6 6.7 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347523299|ref|YP_004780869.1| - 0.44 10.3 0.4 0.44 10.3 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|347523299|ref|YP_004780869.1| - 1 9.3 6.9 0.68 9.9 1.6 2.1 1 1 1 2 2 2 0 Halobacterial output domain 2 Rubredoxin_2 PF18073.1 gi|347523299|ref|YP_004780869.1| - 7.1 6.5 10.6 6.3 6.6 0.6 2.3 1 1 0 1 1 1 0 Rubredoxin metal binding domain Radical_SAM PF04055.21 gi|347523300|ref|YP_004780870.1| - 8.2e-07 29.6 0.0 2.1e-06 28.2 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|347523300|ref|YP_004780870.1| - 0.0012 18.7 0.9 2.6 7.7 3.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF1848) tRNA-synt_2d PF01409.20 gi|347523301|ref|YP_004780871.1| - 1.3e-84 283.5 0.0 1.7e-84 283.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|347523301|ref|YP_004780871.1| - 4.6e-08 32.8 0.0 2e-07 30.7 0.0 2.0 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|347523301|ref|YP_004780871.1| - 0.00056 19.1 0.2 0.47 9.5 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|347523301|ref|YP_004780871.1| - 0.0013 18.5 6.6 0.004 17.0 0.1 4.2 5 1 0 5 5 5 1 MarR family HTH_24 PF13412.6 gi|347523301|ref|YP_004780871.1| - 0.0024 17.4 0.0 0.02 14.4 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|347523301|ref|YP_004780871.1| - 0.0046 16.8 0.3 0.094 12.6 0.2 3.2 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|347523301|ref|YP_004780871.1| - 0.039 13.8 4.0 0.2 11.5 0.1 3.3 2 1 1 3 3 3 0 IclR helix-turn-helix domain PheRS_DBD3 PF18553.1 gi|347523301|ref|YP_004780871.1| - 0.074 13.4 0.0 0.2 12.0 0.0 1.7 1 0 0 1 1 1 0 PheRS DNA binding domain 3 HTH_AsnC-type PF13404.6 gi|347523301|ref|YP_004780871.1| - 0.32 10.9 0.1 0.32 10.9 0.1 2.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|347523301|ref|YP_004780871.1| - 0.35 10.8 1.2 5.5 7.0 0.0 3.4 4 1 0 4 4 4 0 MarR family HemN_C PF06969.16 gi|347523301|ref|YP_004780871.1| - 0.45 10.6 3.1 15 5.8 0.1 2.9 2 0 0 2 2 2 0 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|347523301|ref|YP_004780871.1| - 0.89 9.6 3.4 0.73 9.8 0.1 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain ACT_7 PF13840.6 gi|347523302|ref|YP_004780872.1| - 5.7e-06 26.0 0.5 1.8e-05 24.4 0.2 2.1 1 1 1 2 2 2 1 ACT domain Arginosuc_synth PF00764.19 gi|347523303|ref|YP_004780873.1| - 4.1e-154 513.5 0.0 4.9e-154 513.3 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.21 gi|347523303|ref|YP_004780873.1| - 9.4e-07 28.8 0.0 1.5e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|347523303|ref|YP_004780873.1| - 2.3e-06 27.2 0.0 4.3e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|347523303|ref|YP_004780873.1| - 0.00011 21.1 0.0 0.00014 20.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|347523303|ref|YP_004780873.1| - 0.053 13.1 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|347523303|ref|YP_004780873.1| - 0.066 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 PP-loop family Lyase_1 PF00206.20 gi|347523304|ref|YP_004780874.1| - 6e-31 108.0 0.1 2.2e-30 106.1 0.0 1.9 2 1 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|347523304|ref|YP_004780874.1| - 0.00015 22.4 0.0 0.00062 20.5 0.0 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal YojJ PF10372.9 gi|347523304|ref|YP_004780874.1| - 0.02 15.0 0.0 0.076 13.1 0.0 2.0 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus CPSase_sm_chain PF00988.22 gi|347523305|ref|YP_004780875.1| - 3.6e-46 156.1 0.0 6.6e-46 155.3 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|347523305|ref|YP_004780875.1| - 2.2e-44 151.5 0.0 3.6e-44 150.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|347523305|ref|YP_004780875.1| - 1.9e-07 31.1 0.4 0.001 18.9 0.1 2.3 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|347523305|ref|YP_004780875.1| - 6.1e-05 22.9 0.0 0.0013 18.6 0.0 2.3 2 0 0 2 2 2 1 DJ-1/PfpI family HTH_22 PF13309.6 gi|347523305|ref|YP_004780875.1| - 0.046 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain CPSase_L_D2 PF02786.17 gi|347523306|ref|YP_004780876.1| - 1.3e-103 345.1 0.0 5.3e-69 231.9 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|347523306|ref|YP_004780876.1| - 4.4e-35 120.7 0.0 1.1e-34 119.5 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|347523306|ref|YP_004780876.1| - 1.6e-21 76.6 0.0 1.5e-09 37.6 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|347523306|ref|YP_004780876.1| - 3.6e-15 55.9 0.1 1.3e-07 31.4 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|347523306|ref|YP_004780876.1| - 4e-15 55.9 0.0 4.6e-09 36.1 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.6 gi|347523306|ref|YP_004780876.1| - 2.3e-09 37.0 0.0 0.0015 18.0 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|347523306|ref|YP_004780876.1| - 3e-07 30.6 0.0 0.00055 20.0 0.0 2.8 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|347523306|ref|YP_004780876.1| - 1.3e-06 28.4 0.0 0.0016 18.2 0.0 2.9 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|347523306|ref|YP_004780876.1| - 0.00034 20.3 0.0 2.7 7.6 0.0 3.5 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|347523306|ref|YP_004780876.1| - 0.094 12.3 0.0 3.8 7.0 0.0 2.5 2 0 0 2 2 2 0 ATP-grasp domain RimK PF08443.11 gi|347523307|ref|YP_004780877.1| - 8.5e-33 113.5 0.0 1.2e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|347523307|ref|YP_004780877.1| - 1.8e-11 43.7 0.0 5.1e-11 42.3 0.0 1.7 1 1 1 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|347523307|ref|YP_004780877.1| - 0.0014 18.7 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|347523307|ref|YP_004780877.1| - 0.029 13.6 0.0 0.25 10.5 0.0 2.4 1 1 1 2 2 2 0 Sugar-transfer associated ATP-grasp PaREP1 PF05942.11 gi|347523308|ref|YP_004780878.1| - 3.1e-27 94.8 7.0 4e-27 94.4 7.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|347523308|ref|YP_004780878.1| - 0.00068 19.8 5.3 0.0036 17.4 5.3 2.0 1 1 0 1 1 1 1 HEPN domain DUF357 PF04010.13 gi|347523308|ref|YP_004780878.1| - 0.078 13.1 0.3 0.24 11.5 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF357) Semialdhyde_dh PF01118.24 gi|347523309|ref|YP_004780879.1| - 4.8e-32 110.9 0.0 8.3e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|347523309|ref|YP_004780879.1| - 2.6e-13 50.4 0.0 3.7e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|347523309|ref|YP_004780879.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Radical_SAM PF04055.21 gi|347523310|ref|YP_004780880.1| - 1.6e-18 67.6 0.1 2.4e-18 67.1 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347523310|ref|YP_004780880.1| - 4e-05 23.9 0.0 0.00026 21.3 0.0 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347523310|ref|YP_004780880.1| - 0.0097 16.0 0.0 0.024 14.8 0.0 1.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain HTH_45 PF14947.6 gi|347523311|ref|YP_004780881.1| - 0.0001 22.2 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|347523311|ref|YP_004780881.1| - 0.021 14.4 0.0 0.048 13.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Radical_SAM PF04055.21 gi|347523312|ref|YP_004780882.1| - 4.2e-18 66.3 0.1 1.1e-17 64.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|347523312|ref|YP_004780882.1| - 0.00018 21.5 0.0 0.00039 20.4 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain Hydantoinase_B PF02538.14 gi|347523313|ref|YP_004780883.1| - 9.9e-165 548.8 0.0 1.1e-164 548.7 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase NTP_transf_2 PF01909.23 gi|347523315|ref|YP_004780885.1| - 0.00023 21.4 0.2 0.00039 20.6 0.2 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523315|ref|YP_004780885.1| - 0.0018 18.4 0.1 0.0024 17.9 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HEPN PF05168.14 gi|347523316|ref|YP_004780886.1| - 1.3e-31 109.2 3.9 1.5e-31 108.9 3.9 1.0 1 0 0 1 1 1 1 HEPN domain Thiolase_N PF00108.23 gi|347523317|ref|YP_004780887.1| - 3.4e-11 43.0 0.0 2.6e-10 40.1 0.0 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|347523317|ref|YP_004780887.1| - 0.00016 21.4 0.3 0.0015 18.3 0.0 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.18 gi|347523317|ref|YP_004780887.1| - 0.0074 15.9 1.1 0.013 15.2 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|347523318|ref|YP_004780888.1| - 1.1e-13 51.1 0.0 1.8e-12 47.3 0.0 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|347523318|ref|YP_004780888.1| - 0.00012 21.8 0.0 0.015 14.9 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|347523318|ref|YP_004780888.1| - 0.00025 20.8 2.4 0.00025 20.8 2.4 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_N PF01154.17 gi|347523318|ref|YP_004780888.1| - 0.001 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|347523318|ref|YP_004780888.1| - 0.0013 18.1 0.3 0.0033 16.8 0.4 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain DUF4357 PF14267.6 gi|347523318|ref|YP_004780888.1| - 0.46 10.5 1.8 1 9.4 1.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4357) Pilin_N PF07790.11 gi|347523319|ref|YP_004780889.1| - 9.5e-05 23.2 1.2 0.00014 22.7 1.2 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal LapA_dom PF06305.11 gi|347523319|ref|YP_004780889.1| - 0.56 10.1 2.8 0.91 9.4 2.8 1.3 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain ArsA_ATPase PF02374.15 gi|347523320|ref|YP_004780890.1| - 4.2e-18 65.6 0.0 1.9e-17 63.4 0.0 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|347523320|ref|YP_004780890.1| - 2e-10 40.5 0.1 3.9e-10 39.6 0.1 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|347523320|ref|YP_004780890.1| - 6.8e-09 35.9 0.0 7.7e-08 32.4 0.0 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|347523320|ref|YP_004780890.1| - 0.00025 21.0 0.0 0.00045 20.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|347523320|ref|YP_004780890.1| - 0.00027 20.0 0.1 0.00056 19.0 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|347523320|ref|YP_004780890.1| - 0.00039 19.8 0.0 0.0047 16.3 0.1 2.2 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.22 gi|347523320|ref|YP_004780890.1| - 0.00044 19.9 0.0 0.0015 18.2 0.0 1.8 3 0 0 3 3 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|347523320|ref|YP_004780890.1| - 0.0013 19.1 0.1 0.0024 18.3 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|347523320|ref|YP_004780890.1| - 0.0019 18.3 0.7 0.11 12.6 0.7 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.14 gi|347523320|ref|YP_004780890.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_NifH PF00142.18 gi|347523320|ref|YP_004780890.1| - 0.017 14.6 0.0 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 gi|347523320|ref|YP_004780890.1| - 0.027 14.2 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|347523320|ref|YP_004780890.1| - 0.029 14.0 1.3 0.078 12.5 0.1 2.2 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|347523320|ref|YP_004780890.1| - 0.037 13.2 0.0 0.08 12.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|347523320|ref|YP_004780890.1| - 0.038 13.3 0.1 0.093 12.0 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.6 gi|347523320|ref|YP_004780890.1| - 0.054 13.7 0.0 0.22 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|347523320|ref|YP_004780890.1| - 0.062 13.9 0.3 0.28 11.7 0.1 2.1 2 1 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|347523320|ref|YP_004780890.1| - 0.063 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ DUF815 PF05673.13 gi|347523320|ref|YP_004780890.1| - 0.076 12.2 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA PF00004.29 gi|347523320|ref|YP_004780890.1| - 0.083 13.3 0.0 0.6 10.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|347523320|ref|YP_004780890.1| - 0.087 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|347523320|ref|YP_004780890.1| - 0.099 12.5 0.3 0.31 10.9 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|347523320|ref|YP_004780890.1| - 0.11 12.4 0.3 0.38 10.7 0.0 1.9 2 0 0 2 2 2 0 NTPase Torsin PF06309.11 gi|347523320|ref|YP_004780890.1| - 0.11 12.6 0.0 0.35 11.0 0.0 1.8 2 0 0 2 2 2 0 Torsin ABC_tran PF00005.27 gi|347523320|ref|YP_004780890.1| - 0.2 12.1 0.0 0.39 11.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.6 gi|347523320|ref|YP_004780890.1| - 0.22 11.9 0.1 23 5.4 0.0 2.8 3 0 0 3 3 3 0 AAA domain PaREP1 PF05942.11 gi|347523321|ref|YP_004780891.1| - 2.3e-20 72.6 7.5 3.4e-20 72.1 7.5 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|347523321|ref|YP_004780891.1| - 0.0065 16.7 0.1 0.0094 16.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) Exog_C PF18026.1 gi|347523321|ref|YP_004780891.1| - 0.0066 16.5 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 Endo/exonuclease (EXOG) C-terminal domain HOIP-UBA PF16678.5 gi|347523321|ref|YP_004780891.1| - 0.013 15.5 0.5 0.07 13.1 0.1 2.1 2 1 1 3 3 3 0 HOIP UBA domain pair HEPN PF05168.14 gi|347523321|ref|YP_004780891.1| - 0.049 13.7 8.0 0.061 13.5 6.4 2.0 2 1 0 2 2 2 0 HEPN domain KH_1 PF00013.29 gi|347523322|ref|YP_004780892.1| - 1.6e-11 43.9 1.3 7.8e-06 25.6 0.2 2.4 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|347523322|ref|YP_004780892.1| - 4.5e-06 26.7 0.0 8.7e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Krr1 KH1 domain KH_2 PF07650.17 gi|347523322|ref|YP_004780892.1| - 0.091 12.6 1.3 13 5.7 0.1 2.5 2 0 0 2 2 2 0 KH domain GNAT_acetyltr_2 PF13718.6 gi|347523323|ref|YP_004780893.1| - 1.6e-23 83.3 0.1 9.2e-08 31.8 0.0 3.4 3 1 1 4 4 4 3 GNAT acetyltransferase 2 Acetyltransf_1 PF00583.25 gi|347523323|ref|YP_004780893.1| - 5.6e-06 26.6 0.0 1.8e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|347523323|ref|YP_004780893.1| - 0.00035 20.9 0.0 0.00068 20.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|347523323|ref|YP_004780893.1| - 0.085 12.8 0.0 0.34 10.9 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NUDIX PF00293.28 gi|347523325|ref|YP_004780895.1| - 1.2e-18 67.4 0.0 1.5e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|347523325|ref|YP_004780895.1| - 6.6e-06 26.1 0.0 9.8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain TetR_C_31 PF17940.1 gi|347523326|ref|YP_004780896.1| - 0.056 13.7 7.2 0.07 13.3 7.2 1.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Radical_SAM PF04055.21 gi|347523327|ref|YP_004780897.1| - 1.8e-15 57.7 0.0 2.3e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|347523327|ref|YP_004780897.1| - 3.7e-15 56.1 0.0 5.6e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|347523327|ref|YP_004780897.1| - 2.2e-12 47.4 0.0 3e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain DNA_photolyase PF00875.18 gi|347523327|ref|YP_004780897.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase HEPN PF05168.14 gi|347523328|ref|YP_004780898.1| - 1.7e-30 105.6 0.2 2e-30 105.3 0.2 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|347523329|ref|YP_004780899.1| - 2.3e-12 47.0 0.0 3.1e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523329|ref|YP_004780899.1| - 7.1e-08 32.4 0.0 9.6e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Peptidase_C25 PF01364.18 gi|347523330|ref|YP_004780900.1| - 5.9e-28 98.1 0.0 1.2e-27 97.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase family C25 Apolipoprotein PF01442.18 gi|347523330|ref|YP_004780900.1| - 3.3e-09 36.9 5.6 7.2e-09 35.8 5.6 1.5 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|347523330|ref|YP_004780900.1| - 3.1e-06 27.3 11.1 0.0081 16.2 0.2 2.5 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4164 PF13747.6 gi|347523330|ref|YP_004780900.1| - 0.001 19.3 5.6 0.54 10.6 3.6 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4164) AAA_13 PF13166.6 gi|347523330|ref|YP_004780900.1| - 0.0015 17.3 9.7 0.0021 16.8 9.7 1.1 1 0 0 1 1 1 1 AAA domain DUF1664 PF07889.12 gi|347523330|ref|YP_004780900.1| - 0.0051 16.8 12.2 0.023 14.8 1.9 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) SF-assemblin PF06705.11 gi|347523330|ref|YP_004780900.1| - 0.011 15.1 11.4 0.031 13.6 11.4 1.7 1 1 0 1 1 1 0 SF-assemblin/beta giardin Prominin PF05478.11 gi|347523330|ref|YP_004780900.1| - 0.013 13.5 5.0 0.023 12.7 5.0 1.3 1 0 0 1 1 1 0 Prominin YtkA PF13115.6 gi|347523330|ref|YP_004780900.1| - 0.019 15.5 0.0 0.074 13.7 0.0 2.0 1 0 0 1 1 1 0 YtkA-like Snapin_Pallidin PF14712.6 gi|347523330|ref|YP_004780900.1| - 0.023 15.1 3.6 3.4 8.2 0.1 3.2 1 1 2 3 3 3 0 Snapin/Pallidin Dynamin_M PF01031.20 gi|347523330|ref|YP_004780900.1| - 0.11 11.7 1.4 0.2 10.9 1.4 1.4 1 0 0 1 1 1 0 Dynamin central region DUF2884 PF11101.8 gi|347523330|ref|YP_004780900.1| - 0.2 11.1 10.2 0.034 13.6 3.4 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2884) Mer2 PF09074.10 gi|347523330|ref|YP_004780900.1| - 0.25 11.1 6.5 0.68 9.7 6.5 1.7 1 1 0 1 1 1 0 Mer2 DUF1640 PF07798.11 gi|347523330|ref|YP_004780900.1| - 0.32 11.0 9.9 0.14 12.2 4.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Leu_zip PF15294.6 gi|347523330|ref|YP_004780900.1| - 0.38 10.2 8.0 0.95 8.9 8.0 1.5 1 1 0 1 1 1 0 Leucine zipper ApoLp-III PF07464.11 gi|347523330|ref|YP_004780900.1| - 0.67 10.0 20.4 0.025 14.7 9.7 2.9 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) DUF883 PF05957.13 gi|347523330|ref|YP_004780900.1| - 0.68 10.6 4.5 1.4 9.6 2.1 2.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Allexi_40kDa PF05549.11 gi|347523330|ref|YP_004780900.1| - 0.77 9.2 2.4 1 8.8 0.7 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein Phasin PF05597.11 gi|347523330|ref|YP_004780900.1| - 0.96 9.5 11.0 4.4 7.3 3.1 2.8 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF16 PF01519.16 gi|347523330|ref|YP_004780900.1| - 1.4 9.4 10.9 4 8.0 2.7 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 HSCB_C PF07743.13 gi|347523330|ref|YP_004780900.1| - 1.8 9.1 4.8 24 5.5 4.8 2.5 1 1 0 1 1 1 0 HSCB C-terminal oligomerisation domain PIN_8 PF18476.1 gi|347523330|ref|YP_004780900.1| - 2.2 8.1 5.6 7.2 6.4 5.5 1.8 1 1 0 1 1 1 0 PIN like domain Uso1_p115_C PF04871.13 gi|347523330|ref|YP_004780900.1| - 2.2 8.6 7.5 11 6.4 5.5 2.2 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF3450 PF11932.8 gi|347523330|ref|YP_004780900.1| - 2.4 7.4 7.2 0.81 8.9 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Atg14 PF10186.9 gi|347523330|ref|YP_004780900.1| - 2.6 7.1 6.9 4 6.4 6.9 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF5082 PF16888.5 gi|347523330|ref|YP_004780900.1| - 2.6 8.3 7.4 2.3 8.5 5.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Muted PF14942.6 gi|347523330|ref|YP_004780900.1| - 3.5 7.9 6.6 2.7 8.3 4.0 2.0 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein COG5 PF10392.9 gi|347523330|ref|YP_004780900.1| - 4.3 7.5 7.2 7.4 6.8 3.7 2.5 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Fib_alpha PF08702.10 gi|347523330|ref|YP_004780900.1| - 4.4 7.5 8.0 4.7 7.4 3.7 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Fzo_mitofusin PF04799.13 gi|347523330|ref|YP_004780900.1| - 4.9 6.7 6.5 18 4.8 0.4 2.7 1 1 1 2 2 2 0 fzo-like conserved region XhlA PF10779.9 gi|347523330|ref|YP_004780900.1| - 5.4 7.3 7.9 2.9 8.2 0.4 3.0 2 1 0 2 2 2 0 Haemolysin XhlA NPV_P10 PF05531.12 gi|347523330|ref|YP_004780900.1| - 6.3 7.3 10.2 5 7.7 1.3 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|347523330|ref|YP_004780900.1| - 6.4 7.1 8.7 0.99 9.8 0.6 2.9 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.11 gi|347523330|ref|YP_004780900.1| - 6.7 6.8 9.6 6.2 6.9 3.4 3.1 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.11 gi|347523330|ref|YP_004780900.1| - 10 6.6 14.2 6 7.3 0.3 4.3 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Helicase_C_2 PF13307.6 gi|347523331|ref|YP_004780901.1| - 6.8e-27 94.7 0.0 1.1e-26 94.0 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|347523331|ref|YP_004780901.1| - 6.6e-11 42.1 0.0 1.4e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|347523331|ref|YP_004780901.1| - 6.5e-06 26.0 0.1 0.0085 15.9 0.0 3.4 4 0 0 4 4 4 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|347523331|ref|YP_004780901.1| - 0.0051 16.8 0.0 0.6 10.1 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|347523331|ref|YP_004780901.1| - 0.033 13.8 0.0 0.19 11.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain HAD_2 PF13419.6 gi|347523332|ref|YP_004780902.1| - 0.00012 22.3 0.0 0.00027 21.1 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|347523332|ref|YP_004780902.1| - 0.15 12.2 0.0 25 5.1 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF973 PF06157.11 gi|347523333|ref|YP_004780903.1| - 7.9e-15 54.7 25.8 9.5e-15 54.4 25.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF4013 PF13197.6 gi|347523333|ref|YP_004780903.1| - 0.017 15.0 3.0 0.017 15.0 3.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4013) Methyltransf_11 PF08241.12 gi|347523334|ref|YP_004780904.1| - 1.4e-13 51.3 0.1 2.1e-13 50.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347523334|ref|YP_004780904.1| - 1.7e-08 35.1 0.0 2.7e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|347523334|ref|YP_004780904.1| - 2.8e-05 23.8 0.0 3.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|347523334|ref|YP_004780904.1| - 0.00019 21.3 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347523334|ref|YP_004780904.1| - 0.0035 18.0 0.0 0.0064 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|347523334|ref|YP_004780904.1| - 0.0073 16.1 0.0 0.0099 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|347523334|ref|YP_004780904.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family Radical_SAM PF04055.21 gi|347523335|ref|YP_004780905.1| - 2e-28 99.9 0.2 4.3e-28 98.8 0.2 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|347523335|ref|YP_004780905.1| - 2.6e-10 40.4 0.3 6e-10 39.2 0.3 1.7 1 0 0 1 1 1 1 B12 binding domain CobW_C PF07683.14 gi|347523335|ref|YP_004780905.1| - 0.13 12.2 0.1 0.34 10.9 0.1 1.8 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain Cytochrome_C7 PF14522.6 gi|347523337|ref|YP_004780907.1| - 3e-12 46.4 60.0 0.0046 16.9 6.8 7.7 2 2 5 7 7 7 7 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|347523337|ref|YP_004780907.1| - 6.5e-11 42.5 49.2 0.015 15.8 3.4 6.7 2 2 4 6 6 6 6 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|347523337|ref|YP_004780907.1| - 5.2e-08 32.5 79.5 5.5e-05 22.8 3.1 10.3 7 3 2 10 10 10 7 Doubled CXXCH motif (Paired_CXXCH_1) Multi-haem_cyto PF13447.6 gi|347523339|ref|YP_004780909.1| - 4.2e-23 82.0 8.0 6.2e-16 58.5 3.1 3.4 3 0 0 3 3 3 3 Seven times multi-haem cytochrome CxxCH Cytochrome_C7 PF14522.6 gi|347523339|ref|YP_004780909.1| - 1.3e-12 47.5 4.3 0.0022 17.9 0.5 4.8 3 1 1 4 4 4 4 Cytochrome c7 and related cytochrome c Cytochrome_C554 PF13435.6 gi|347523339|ref|YP_004780909.1| - 1.4e-08 35.5 19.9 0.034 15.0 0.1 6.0 6 0 0 6 6 6 3 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.10 gi|347523339|ref|YP_004780909.1| - 1.7e-05 24.5 23.8 0.77 9.6 3.8 6.7 6 1 1 7 7 7 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 gi|347523339|ref|YP_004780909.1| - 2.7e-05 24.4 16.8 0.097 13.0 0.6 4.9 4 1 0 4 4 4 2 Class III cytochrome C family Cytochrom_c3_2 PF14537.6 gi|347523339|ref|YP_004780909.1| - 0.014 15.8 22.0 3.9 8.0 0.2 5.8 3 2 2 5 5 5 0 Cytochrome c3 NapB PF03892.14 gi|347523339|ref|YP_004780909.1| - 0.097 12.7 5.9 14 5.7 0.1 4.9 5 0 0 5 5 5 0 Nitrate reductase cytochrome c-type subunit (NapB) Cytochrom_NNT PF03264.14 gi|347523339|ref|YP_004780909.1| - 0.11 12.2 15.8 0.28 10.9 0.3 5.6 4 2 2 6 6 6 0 NapC/NirT cytochrome c family, N-terminal region Cytochrom_C552 PF02335.15 gi|347523339|ref|YP_004780909.1| - 0.13 11.1 9.5 1.1 8.1 0.1 4.4 4 1 1 5 5 5 0 Cytochrome c552 Cytochrome_CBB3 PF13442.6 gi|347523339|ref|YP_004780909.1| - 0.47 10.8 24.4 7.1 7.0 0.0 7.4 5 2 3 8 8 8 0 Cytochrome C oxidase, cbb3-type, subunit III DUF3365 PF11845.8 gi|347523339|ref|YP_004780909.1| - 2.4 8.5 0.0 2.4 8.5 0.0 7.1 6 2 3 9 9 8 0 Protein of unknown function (DUF3365) DUF1864 PF08933.11 gi|347523341|ref|YP_004780911.1| - 0.0002 20.3 0.7 0.0003 19.7 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1864) Intein_splicing PF14890.6 gi|347523341|ref|YP_004780911.1| - 0.0068 16.4 0.6 1.6 8.7 0.0 2.6 1 1 1 2 2 2 2 Intein splicing domain DUF553 PF04473.12 gi|347523341|ref|YP_004780911.1| - 0.0076 15.8 1.0 0.022 14.3 0.1 2.1 2 1 0 2 2 2 1 Transglutaminase-like domain MbeD_MobD PF04899.12 gi|347523341|ref|YP_004780911.1| - 0.0081 16.3 0.6 0.015 15.4 0.6 1.4 1 0 0 1 1 1 1 MbeD/MobD like SHE3 PF17078.5 gi|347523341|ref|YP_004780911.1| - 0.021 14.5 1.9 0.036 13.8 1.9 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 HMMR_C PF15908.5 gi|347523341|ref|YP_004780911.1| - 0.039 14.2 0.4 0.58 10.4 0.6 2.1 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor C-terminal DUF3450 PF11932.8 gi|347523341|ref|YP_004780911.1| - 0.044 13.1 3.2 0.066 12.5 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Cnn_1N PF07989.11 gi|347523341|ref|YP_004780911.1| - 0.11 12.6 2.6 0.22 11.7 2.6 1.4 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 Sec34 PF04136.15 gi|347523341|ref|YP_004780911.1| - 0.43 10.4 4.2 0.8 9.6 4.2 1.4 1 0 0 1 1 1 0 Sec34-like family YabA PF06156.13 gi|347523341|ref|YP_004780911.1| - 0.56 10.9 2.0 1.1 9.9 2.0 1.5 1 0 0 1 1 1 0 Initiation control protein YabA Fibrillarin PF01269.17 gi|347523342|ref|YP_004780912.1| - 4.4e-107 356.4 0.0 5.1e-107 356.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|347523342|ref|YP_004780912.1| - 0.0004 20.2 0.0 0.00052 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|347523342|ref|YP_004780912.1| - 0.0027 17.8 0.0 0.0035 17.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase F420_ligase PF01996.16 gi|347523342|ref|YP_004780912.1| - 0.0034 16.8 0.0 0.0052 16.2 0.0 1.2 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Methyltr_RsmB-F PF01189.17 gi|347523342|ref|YP_004780912.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Peptidase_M28 PF04389.17 gi|347523343|ref|YP_004780913.1| - 1.1e-17 64.4 0.0 1.9e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|347523343|ref|YP_004780913.1| - 0.0015 18.3 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 PA PF02225.22 gi|347523343|ref|YP_004780913.1| - 0.024 14.6 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 PA domain Peptidase_S24 PF00717.23 gi|347523343|ref|YP_004780913.1| - 0.14 12.2 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Peptidase S24-like DUF4910 PF16254.5 gi|347523343|ref|YP_004780913.1| - 0.2 10.5 0.0 3.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4910) Shikimate_dh_N PF08501.11 gi|347523344|ref|YP_004780914.1| - 1.8e-22 79.3 0.0 6.4e-22 77.6 0.0 1.9 2 1 1 3 3 3 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|347523344|ref|YP_004780914.1| - 3.6e-07 30.3 0.0 6.9e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|347523344|ref|YP_004780914.1| - 3.7e-06 26.6 2.4 6e-06 25.9 0.1 2.4 2 0 0 2 2 2 1 Shikimate 5'-dehydrogenase C-terminal domain OCD_Mu_crystall PF02423.15 gi|347523344|ref|YP_004780914.1| - 0.0011 18.0 0.0 0.004 16.1 0.0 1.7 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|347523344|ref|YP_004780914.1| - 0.0057 17.2 0.2 0.013 16.0 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|347523344|ref|YP_004780914.1| - 0.049 12.9 0.2 0.088 12.1 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ABC_tran PF00005.27 gi|347523345|ref|YP_004780915.1| - 1.1e-23 84.3 0.0 2e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|347523345|ref|YP_004780915.1| - 4.2e-19 68.8 0.1 7.9e-19 67.9 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|347523345|ref|YP_004780915.1| - 2.6e-06 27.8 0.0 0.024 14.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 gi|347523345|ref|YP_004780915.1| - 9.8e-06 25.6 0.4 0.0077 16.1 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523345|ref|YP_004780915.1| - 0.0019 17.7 0.0 0.03 13.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|347523345|ref|YP_004780915.1| - 0.031 13.7 0.0 1.5 8.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial TniB protein AAA_16 PF13191.6 gi|347523345|ref|YP_004780915.1| - 0.046 14.1 0.1 0.089 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|347523345|ref|YP_004780915.1| - 0.078 12.7 0.0 0.35 10.6 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA PF00004.29 gi|347523345|ref|YP_004780915.1| - 0.1 13.0 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|347523345|ref|YP_004780915.1| - 0.16 11.5 0.0 0.46 10.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain NikR_C PF08753.11 gi|347523346|ref|YP_004780916.1| - 2.5e-09 37.1 0.1 4.5e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|347523346|ref|YP_004780916.1| - 3e-06 27.0 0.3 6.6e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|347523346|ref|YP_004780916.1| - 4.2e-05 23.4 0.0 7.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 gi|347523346|ref|YP_004780916.1| - 0.035 14.2 0.0 0.072 13.2 0.0 1.6 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system ABC-3 PF00950.17 gi|347523347|ref|YP_004780917.1| - 1.5e-22 80.4 30.8 2.3e-22 79.7 30.8 1.2 1 0 0 1 1 1 1 ABC 3 transport family ZnuA PF01297.17 gi|347523347|ref|YP_004780917.1| - 4.2e-19 69.0 0.0 6.5e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ATPase PF06745.13 gi|347523348|ref|YP_004780918.1| - 1.3e-55 188.3 0.1 1.5e-55 188.1 0.1 1.1 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|347523348|ref|YP_004780918.1| - 5.8e-08 32.3 0.0 9.5e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|347523348|ref|YP_004780918.1| - 3.9e-07 29.8 0.1 6.2e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|347523348|ref|YP_004780918.1| - 3.5e-06 26.7 0.0 6.8e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|347523348|ref|YP_004780918.1| - 7e-05 22.7 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|347523348|ref|YP_004780918.1| - 0.00021 20.0 0.2 0.0038 15.9 0.0 2.2 2 1 0 2 2 2 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|347523348|ref|YP_004780918.1| - 0.00022 21.0 0.0 0.00074 19.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|347523348|ref|YP_004780918.1| - 0.0017 17.7 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|347523348|ref|YP_004780918.1| - 0.0043 16.8 0.0 0.0071 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347523348|ref|YP_004780918.1| - 0.0086 16.4 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain PAXNEB PF05625.11 gi|347523348|ref|YP_004780918.1| - 0.023 13.9 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.9 gi|347523348|ref|YP_004780918.1| - 0.064 12.5 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|347523348|ref|YP_004780918.1| - 0.11 12.8 0.0 0.25 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain HTH_5 PF01022.20 gi|347523349|ref|YP_004780919.1| - 6.1e-14 51.6 0.1 1e-13 50.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|347523349|ref|YP_004780919.1| - 7.3e-14 51.6 0.7 1.2e-13 50.8 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|347523349|ref|YP_004780919.1| - 2.2e-09 37.1 0.3 4.3e-09 36.1 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|347523349|ref|YP_004780919.1| - 7.4e-07 28.6 1.8 2.4e-06 27.0 1.8 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|347523349|ref|YP_004780919.1| - 8.7e-06 25.6 0.0 1.4e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|347523349|ref|YP_004780919.1| - 2.2e-05 24.6 0.0 3.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|347523349|ref|YP_004780919.1| - 2.6e-05 24.0 0.1 3.9e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|347523349|ref|YP_004780919.1| - 0.00011 22.0 0.6 0.00019 21.2 0.6 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|347523349|ref|YP_004780919.1| - 0.00051 20.2 0.0 0.00066 19.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|347523349|ref|YP_004780919.1| - 0.0006 20.2 0.0 0.00089 19.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|347523349|ref|YP_004780919.1| - 0.004 17.2 0.1 0.007 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|347523349|ref|YP_004780919.1| - 0.0067 16.4 0.3 0.011 15.7 0.3 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|347523349|ref|YP_004780919.1| - 0.0089 16.0 0.1 0.014 15.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|347523349|ref|YP_004780919.1| - 0.0096 15.8 0.4 0.017 15.1 0.4 1.4 1 0 0 1 1 1 1 HTH domain HemN_C PF06969.16 gi|347523349|ref|YP_004780919.1| - 0.039 14.0 0.2 0.062 13.4 0.2 1.2 1 0 0 1 1 1 0 HemN C-terminal domain DUF2250 PF10007.9 gi|347523349|ref|YP_004780919.1| - 0.046 13.8 0.0 0.06 13.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|347523349|ref|YP_004780919.1| - 0.074 12.7 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|347523349|ref|YP_004780919.1| - 0.092 12.7 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RIO1 PF01163.22 gi|347523350|ref|YP_004780920.1| - 2e-49 167.7 0.0 2.6e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|347523350|ref|YP_004780920.1| - 1.9e-23 82.5 0.2 3.8e-23 81.5 0.2 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|347523350|ref|YP_004780920.1| - 1.3e-08 35.1 0.3 0.00068 19.6 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|347523350|ref|YP_004780920.1| - 2.2e-05 23.9 0.0 0.00052 19.4 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|347523350|ref|YP_004780920.1| - 7.2e-05 21.7 0.0 8.7e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase YrbL-PhoP_reg PF10707.9 gi|347523350|ref|YP_004780920.1| - 0.026 14.1 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL Pkinase PF00069.25 gi|347523350|ref|YP_004780920.1| - 0.073 12.4 0.2 0.5 9.7 0.2 2.0 1 1 0 1 1 1 0 Protein kinase domain TrmB PF01978.19 gi|347523350|ref|YP_004780920.1| - 0.097 12.6 1.1 15 5.6 0.1 3.5 3 2 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|347523350|ref|YP_004780920.1| - 0.14 12.5 0.0 0.4 11.1 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator DUF2797 PF10977.8 gi|347523351|ref|YP_004780921.1| - 6.3e-09 36.1 0.0 9.1e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) MFS_1 PF07690.16 gi|347523352|ref|YP_004780922.1| - 8.6e-20 71.0 27.6 8.6e-20 71.0 27.6 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|347523352|ref|YP_004780922.1| - 0.0014 17.5 4.2 0.0014 17.5 4.2 1.8 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.24 gi|347523352|ref|YP_004780922.1| - 0.35 9.7 21.3 0.033 13.1 5.8 3.0 2 1 1 3 3 3 0 Sugar (and other) transporter OATP PF03137.20 gi|347523352|ref|YP_004780922.1| - 3.2 5.9 5.5 1.5 7.0 0.5 2.3 2 1 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF4145 PF13643.6 gi|347523353|ref|YP_004780923.1| - 0.082 13.0 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) B3_4 PF03483.17 gi|347523354|ref|YP_004780924.1| - 4.3e-30 104.7 0.0 6.7e-30 104.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain MobB PF03205.14 gi|347523356|ref|YP_004780926.1| - 1.2e-15 57.5 0.2 3.4e-15 56.1 0.2 1.6 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.6 gi|347523356|ref|YP_004780926.1| - 7e-05 22.7 0.1 0.00013 21.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain DUF1611 PF07755.11 gi|347523356|ref|YP_004780926.1| - 0.0021 17.4 1.8 0.12 11.6 1.8 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain RraA-like PF03737.15 gi|347523356|ref|YP_004780926.1| - 0.066 13.4 0.9 1.5 9.0 0.1 2.0 1 1 0 2 2 2 0 Aldolase/RraA Methyltr_RsmB-F PF01189.17 gi|347523357|ref|YP_004780927.1| - 7.7e-26 91.0 0.0 2.9e-25 89.1 0.0 1.8 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F TrmB PF01978.19 gi|347523358|ref|YP_004780928.1| - 6.4e-05 22.8 0.0 0.00018 21.3 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|347523358|ref|YP_004780928.1| - 0.015 15.3 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR_2 PF12802.7 gi|347523358|ref|YP_004780928.1| - 0.029 14.3 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF742 PF05331.11 gi|347523358|ref|YP_004780928.1| - 0.041 13.7 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) PTPS PF01242.19 gi|347523359|ref|YP_004780929.1| - 1.3e-30 105.9 0.0 1.4e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase SDH_sah PF01972.16 gi|347523360|ref|YP_004780930.1| - 3.2e-128 426.7 0.7 4.1e-128 426.3 0.7 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|347523360|ref|YP_004780930.1| - 1.4e-06 28.3 0.0 6.8e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|347523360|ref|YP_004780930.1| - 0.0011 19.0 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family S49 AMP-binding PF00501.28 gi|347523361|ref|YP_004780931.1| - 3.2e-84 283.0 0.0 4.4e-84 282.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|347523361|ref|YP_004780931.1| - 5.9e-12 46.4 0.3 2e-11 44.7 0.1 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain PALP PF00291.25 gi|347523362|ref|YP_004780932.1| - 1.7e-70 237.8 1.9 2e-70 237.5 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ZipA_C PF04354.13 gi|347523362|ref|YP_004780932.1| - 0.033 14.0 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain Pribosyltran PF00156.27 gi|347523362|ref|YP_004780932.1| - 0.051 13.1 0.2 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 Phosphoribosyl transferase domain ATP-synt_C PF00137.21 gi|347523363|ref|YP_004780933.1| - 1e-17 64.2 16.2 1e-17 64.2 16.2 2.5 2 1 1 3 3 3 1 ATP synthase subunit C DUF2165 PF09933.9 gi|347523363|ref|YP_004780933.1| - 2.7 8.0 8.4 1.1 9.3 4.2 1.9 1 1 1 2 2 2 0 Predicted small integral membrane protein (DUF2165) tRNA-synt_2b PF00587.25 gi|347523364|ref|YP_004780934.1| - 1.1e-24 87.4 0.0 1.8e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|347523364|ref|YP_004780934.1| - 7.9e-22 77.2 0.6 1.5e-21 76.3 0.6 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|347523364|ref|YP_004780934.1| - 1.5e-14 53.9 0.0 3.1e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal ProRS-C_2 PF09181.10 gi|347523364|ref|YP_004780934.1| - 0.021 14.9 0.0 0.056 13.6 0.0 1.7 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal DUF2101 PF09874.9 gi|347523364|ref|YP_004780934.1| - 0.11 12.2 0.4 0.22 11.2 0.4 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) EPSP_synthase PF00275.20 gi|347523366|ref|YP_004780936.1| - 8.4e-08 31.3 0.0 1.5e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Thg1 PF04446.12 gi|347523367|ref|YP_004780937.1| - 2.5e-17 63.1 0.0 3.5e-17 62.6 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase NUDIX PF00293.28 gi|347523368|ref|YP_004780938.1| - 1.8e-14 53.9 0.0 2.3e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.6 gi|347523368|ref|YP_004780938.1| - 0.041 13.5 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase EamA PF00892.20 gi|347523369|ref|YP_004780939.1| - 5.6e-17 62.2 45.3 9.3e-14 51.8 16.1 2.2 2 0 0 2 2 2 2 EamA-like transporter family DUF3188 PF11384.8 gi|347523369|ref|YP_004780939.1| - 0.0044 16.7 0.9 0.0044 16.7 0.9 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF3188) PAPS_reduct PF01507.19 gi|347523370|ref|YP_004780940.1| - 2.6e-35 122.0 0.0 3.6e-35 121.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|347523370|ref|YP_004780940.1| - 4.5e-06 25.9 0.0 6.7e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|347523370|ref|YP_004780940.1| - 0.00011 21.7 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|347523370|ref|YP_004780940.1| - 0.033 13.0 0.0 0.057 12.2 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|347523370|ref|YP_004780940.1| - 0.048 13.4 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 PP-loop family ETF PF01012.21 gi|347523370|ref|YP_004780940.1| - 0.068 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain AP_endonuc_2 PF01261.24 gi|347523370|ref|YP_004780940.1| - 0.14 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Voltage_CLC PF00654.20 gi|347523371|ref|YP_004780941.1| - 3.9e-43 148.1 31.2 3.9e-43 148.1 31.2 2.0 1 1 1 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|347523371|ref|YP_004780941.1| - 8.2e-18 64.6 0.3 5.7e-08 33.1 0.1 2.8 1 1 0 2 2 2 2 CBS domain DUF4229 PF14012.6 gi|347523371|ref|YP_004780941.1| - 0.022 14.8 0.4 0.022 14.8 0.4 5.1 4 2 2 6 6 6 0 Protein of unknown function (DUF4229) PetG PF02529.15 gi|347523371|ref|YP_004780941.1| - 0.13 12.1 5.0 0.22 11.4 2.3 3.0 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 Keratin_assoc PF09775.9 gi|347523371|ref|YP_004780941.1| - 0.14 11.8 2.8 0.16 11.6 0.2 2.5 2 0 0 2 2 2 0 Keratinocyte-associated protein 2 HAS-barrel PF09378.10 gi|347523372|ref|YP_004780942.1| - 0.0037 17.4 0.1 0.0043 17.2 0.1 1.3 1 1 0 1 1 1 1 HAS barrel domain DUF4438 PF14505.6 gi|347523372|ref|YP_004780942.1| - 0.038 12.9 0.0 0.04 12.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) PrmA PF06325.13 gi|347523373|ref|YP_004780943.1| - 4e-10 39.6 0.5 5.5e-10 39.1 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|347523373|ref|YP_004780943.1| - 4.8e-06 26.5 0.0 5.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|347523373|ref|YP_004780943.1| - 1.3e-05 24.8 0.1 1.8e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|347523373|ref|YP_004780943.1| - 8e-05 23.3 0.0 0.00014 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347523373|ref|YP_004780943.1| - 0.00036 21.1 0.1 0.0008 20.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|347523373|ref|YP_004780943.1| - 0.0012 18.6 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.9 gi|347523373|ref|YP_004780943.1| - 0.0027 17.5 0.0 0.0037 17.0 0.0 1.1 1 0 0 1 1 1 1 Lysine methyltransferase Herpes_UL31 PF02718.14 gi|347523373|ref|YP_004780943.1| - 0.0036 16.3 0.0 0.0049 15.9 0.0 1.1 1 0 0 1 1 1 1 Herpesvirus UL31-like protein Methyltransf_32 PF13679.6 gi|347523373|ref|YP_004780943.1| - 0.026 14.5 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|347523373|ref|YP_004780943.1| - 0.03 14.3 0.1 0.044 13.7 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|347523373|ref|YP_004780943.1| - 0.038 13.8 0.1 0.06 13.1 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347523373|ref|YP_004780943.1| - 0.13 13.0 0.0 0.3 11.8 0.0 1.6 2 0 0 2 2 1 0 Methyltransferase domain zinc_ribbon_2 PF13240.6 gi|347523374|ref|YP_004780944.1| - 0.001 18.7 3.1 0.14 11.9 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|347523374|ref|YP_004780944.1| - 0.0031 17.5 0.3 0.2 11.6 0.0 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|347523374|ref|YP_004780944.1| - 0.0065 16.0 1.2 1.9 8.1 0.2 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger DUF2688 PF10892.8 gi|347523374|ref|YP_004780944.1| - 0.008 15.6 0.6 2.2 7.8 0.2 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2688) zf-IS66 PF13005.7 gi|347523374|ref|YP_004780944.1| - 0.01 16.3 1.1 0.43 11.0 0.1 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|347523374|ref|YP_004780944.1| - 0.027 13.9 2.6 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain SpecificRecomb PF10136.9 gi|347523374|ref|YP_004780944.1| - 0.036 12.4 0.0 0.043 12.1 0.0 1.0 1 0 0 1 1 1 0 Site-specific recombinase zf-Mss51 PF13824.6 gi|347523374|ref|YP_004780944.1| - 0.039 14.0 1.1 0.39 10.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|347523374|ref|YP_004780944.1| - 0.041 14.0 4.8 0.81 9.9 4.8 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-HYPF PF07503.12 gi|347523374|ref|YP_004780944.1| - 0.054 13.3 2.6 0.84 9.5 0.1 2.9 3 0 0 3 3 3 0 HypF finger DNA_ligase_ZBD PF03119.16 gi|347523374|ref|YP_004780944.1| - 0.07 13.2 1.7 1.1 9.3 0.0 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|347523374|ref|YP_004780944.1| - 0.1 12.0 2.0 0.85 9.0 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_ribbon_SprT PF17283.2 gi|347523374|ref|YP_004780944.1| - 0.1 12.5 4.0 5.3 7.0 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|347523374|ref|YP_004780944.1| - 0.21 11.3 8.5 1.4 8.7 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2 PF00096.26 gi|347523374|ref|YP_004780944.1| - 0.48 11.0 3.8 11 6.7 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-HIT PF04438.16 gi|347523374|ref|YP_004780944.1| - 0.49 10.3 5.5 1.9 8.4 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger DUF35_N PF12172.8 gi|347523374|ref|YP_004780944.1| - 0.54 10.2 6.0 7.3 6.6 1.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CCHC_5 PF14787.6 gi|347523374|ref|YP_004780944.1| - 1.4 8.7 8.2 0.43 10.3 2.2 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Amidohydro_1 PF01979.20 gi|347523375|ref|YP_004780945.1| - 9.3e-14 51.5 0.0 4.7e-10 39.3 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|347523375|ref|YP_004780945.1| - 5.6e-09 36.0 0.2 0.0002 21.0 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family RNA_binding PF01877.17 gi|347523376|ref|YP_004780946.1| - 1.6e-33 115.5 0.1 1.9e-33 115.3 0.1 1.1 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|347523377|ref|YP_004780947.1| - 1.6e-16 60.4 0.0 2.1e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 RNase_P_Rpp14 PF01900.19 gi|347523378|ref|YP_004780948.1| - 7.5e-15 55.0 0.2 2.5e-14 53.4 0.0 1.7 2 0 0 2 2 2 1 Rpp14/Pop5 family Imm58 PF15581.6 gi|347523378|ref|YP_004780948.1| - 0.0024 17.9 0.7 0.0049 16.9 0.8 1.5 1 1 1 2 2 2 1 Immunity protein 58 TrkA_N PF02254.18 gi|347523379|ref|YP_004780949.1| - 9.2e-21 74.3 0.9 2.8e-20 72.7 0.8 1.9 2 0 0 2 2 2 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|347523379|ref|YP_004780949.1| - 2.1e-19 69.2 4.4 4.6e-19 68.1 4.4 1.5 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|347523379|ref|YP_004780949.1| - 3e-06 27.0 0.0 8.7e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain Ion_trans PF00520.31 gi|347523379|ref|YP_004780949.1| - 4.3e-05 22.9 0.6 6.1e-05 22.4 0.6 1.3 1 0 0 1 1 1 1 Ion transport protein Spore_YabQ PF09578.10 gi|347523379|ref|YP_004780949.1| - 5.4 7.3 7.2 8.4 6.7 2.8 2.4 1 1 1 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) DAHP_synth_1 PF00793.20 gi|347523380|ref|YP_004780950.1| - 8.3e-57 192.1 0.0 1.1e-56 191.7 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|347523380|ref|YP_004780950.1| - 0.0015 18.0 0.0 0.021 14.3 0.0 2.3 1 1 1 2 2 2 1 NeuB family Methyltr_RsmB-F PF01189.17 gi|347523381|ref|YP_004780951.1| - 5.3e-50 169.8 0.0 7.7e-50 169.3 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|347523381|ref|YP_004780951.1| - 5.2e-08 33.3 0.0 1.6e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|347523381|ref|YP_004780951.1| - 6.2e-05 22.8 0.0 0.00016 21.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|347523381|ref|YP_004780951.1| - 0.0014 18.8 0.0 0.003 17.7 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 gi|347523381|ref|YP_004780951.1| - 0.0054 16.1 0.0 0.34 10.2 0.0 2.2 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Fibrillarin PF01269.17 gi|347523381|ref|YP_004780951.1| - 0.015 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin Methyltransf_25 PF13649.6 gi|347523381|ref|YP_004780951.1| - 0.042 14.6 0.1 1.3 9.8 0.1 2.8 1 1 0 1 1 1 0 Methyltransferase domain NusB PF01029.18 gi|347523381|ref|YP_004780951.1| - 0.058 13.6 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 NusB family Methyltransf_11 PF08241.12 gi|347523381|ref|YP_004780951.1| - 0.1 13.3 0.5 1.4 9.7 0.1 2.8 2 1 0 2 2 2 0 Methyltransferase domain TatD_DNase PF01026.21 gi|347523382|ref|YP_004780952.1| - 7.1e-46 156.6 0.0 8e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase FAM83 PF07894.12 gi|347523382|ref|YP_004780952.1| - 0.089 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 FAM83 A-H NTP_transferase PF00483.23 gi|347523383|ref|YP_004780953.1| - 1.1e-40 139.8 0.0 1.3e-40 139.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|347523383|ref|YP_004780953.1| - 3.4e-12 47.0 0.0 3.6e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|347523383|ref|YP_004780953.1| - 0.00016 21.5 0.0 0.00041 20.2 0.0 1.7 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|347523383|ref|YP_004780953.1| - 0.041 13.8 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Radical_SAM PF04055.21 gi|347523384|ref|YP_004780954.1| - 8.7e-26 91.3 0.0 8.7e-26 91.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|347523384|ref|YP_004780954.1| - 7.4e-09 35.8 0.5 3.1e-08 33.8 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|347523384|ref|YP_004780954.1| - 1.6e-07 31.7 1.1 4.1e-07 30.4 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|347523384|ref|YP_004780954.1| - 0.0088 15.5 0.0 0.77 9.2 0.0 2.3 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Cob_adeno_trans PF01923.18 gi|347523386|ref|YP_004780956.1| - 4.1e-40 137.6 0.0 4.7e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Corona_NS3b PF03053.14 gi|347523387|ref|YP_004780957.1| - 0.011 15.6 0.1 0.015 15.1 0.1 1.2 1 0 0 1 1 1 0 ORF3b coronavirus protein Cation_efflux PF01545.21 gi|347523388|ref|YP_004780958.1| - 9e-13 48.4 11.9 1.2e-12 48.0 11.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|347523388|ref|YP_004780958.1| - 1.4e-05 25.1 2.7 2.8e-05 24.2 2.6 1.6 1 1 0 1 1 1 1 Dimerisation domain of Zinc Transporter OCD_Mu_crystall PF02423.15 gi|347523389|ref|YP_004780959.1| - 8.5e-106 353.5 0.5 9.3e-106 353.3 0.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|347523389|ref|YP_004780959.1| - 0.0031 17.6 0.1 0.0047 17.0 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Radical_SAM PF04055.21 gi|347523390|ref|YP_004780960.1| - 1.2e-18 68.0 0.1 3.4e-18 66.6 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|347523391|ref|YP_004780961.1| - 8.5e-22 77.3 0.2 1.3e-20 73.5 0.0 2.6 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|347523391|ref|YP_004780961.1| - 5.9e-21 75.5 0.1 2.3e-20 73.6 0.1 1.9 1 1 0 1 1 1 1 Radical SAM superfamily DUF2208 PF09973.9 gi|347523392|ref|YP_004780962.1| - 3.8e-65 219.7 5.7 4.2e-65 219.6 5.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF3488 PF11992.8 gi|347523392|ref|YP_004780962.1| - 0.0054 15.7 0.4 0.011 14.7 0.4 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3488) V_ATPase_I PF01496.19 gi|347523392|ref|YP_004780962.1| - 0.086 10.8 1.7 0.11 10.3 1.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FUN14 PF04930.15 gi|347523394|ref|YP_004780964.1| - 1.3e-17 64.0 3.7 1.6e-17 63.7 3.7 1.1 1 0 0 1 1 1 1 FUN14 family Bacteriocin_IIc PF10439.9 gi|347523394|ref|YP_004780964.1| - 0.065 13.4 1.4 0.065 13.4 1.4 2.1 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide SPC12 PF06645.13 gi|347523394|ref|YP_004780964.1| - 4.7 7.4 7.2 0.91 9.7 2.1 2.3 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) PsiE PF06146.12 gi|347523395|ref|YP_004780965.1| - 4e-09 36.7 8.3 4e-09 36.7 8.3 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E MobB PF03205.14 gi|347523396|ref|YP_004780966.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_26 PF13500.6 gi|347523396|ref|YP_004780966.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ThiI PF02568.14 gi|347523397|ref|YP_004780967.1| - 1.1e-21 77.4 0.0 1.6e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|347523397|ref|YP_004780967.1| - 0.067 12.7 0.1 1.6 8.2 0.0 2.2 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|347523397|ref|YP_004780967.1| - 0.14 11.5 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|347523397|ref|YP_004780967.1| - 0.14 11.9 0.0 0.6 9.8 0.0 1.8 2 1 0 2 2 2 0 PP-loop family ZapB PF06005.12 gi|347523399|ref|YP_004780969.1| - 3.9e-06 27.2 7.5 3.9e-06 27.2 7.5 2.3 3 0 0 3 3 1 1 Cell division protein ZapB DUF16 PF01519.16 gi|347523399|ref|YP_004780969.1| - 4.2e-05 24.0 1.4 0.00017 22.0 0.6 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF16 HOOK PF05622.12 gi|347523399|ref|YP_004780969.1| - 0.00029 19.1 0.2 0.00043 18.6 0.2 1.2 1 0 0 1 1 1 1 HOOK protein IFT57 PF10498.9 gi|347523399|ref|YP_004780969.1| - 0.00065 18.8 1.7 0.001 18.2 1.7 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 AAA_13 PF13166.6 gi|347523399|ref|YP_004780969.1| - 0.0013 17.5 1.7 0.0019 16.9 1.7 1.1 1 0 0 1 1 1 1 AAA domain Atg14 PF10186.9 gi|347523399|ref|YP_004780969.1| - 0.0015 17.6 2.1 0.0021 17.2 2.1 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 LPP PF04728.13 gi|347523399|ref|YP_004780969.1| - 0.0019 18.6 0.5 0.0042 17.4 0.5 1.6 1 0 0 1 1 1 1 Lipoprotein leucine-zipper DUF3450 PF11932.8 gi|347523399|ref|YP_004780969.1| - 0.0041 16.4 2.2 0.0083 15.5 2.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Apolipoprotein PF01442.18 gi|347523399|ref|YP_004780969.1| - 0.0049 16.8 2.6 0.01 15.8 2.6 1.5 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain MutS_III PF05192.18 gi|347523399|ref|YP_004780969.1| - 0.0049 17.1 2.7 0.0081 16.4 2.7 1.3 1 1 0 1 1 1 1 MutS domain III RPW8 PF05659.11 gi|347523399|ref|YP_004780969.1| - 0.006 16.3 0.5 0.013 15.1 0.5 1.6 1 0 0 1 1 1 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 Fib_alpha PF08702.10 gi|347523399|ref|YP_004780969.1| - 0.0067 16.6 0.3 0.01 16.0 0.3 1.3 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family CC2-LZ PF16516.5 gi|347523399|ref|YP_004780969.1| - 0.0074 16.6 2.8 0.014 15.7 2.1 1.9 2 0 0 2 2 1 1 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator KASH_CCD PF14662.6 gi|347523399|ref|YP_004780969.1| - 0.0077 16.1 1.2 0.015 15.1 1.2 1.4 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DUF4407 PF14362.6 gi|347523399|ref|YP_004780969.1| - 0.0078 15.6 0.2 0.0099 15.3 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Prefoldin_2 PF01920.20 gi|347523399|ref|YP_004780969.1| - 0.0088 16.0 1.6 0.029 14.3 1.5 1.9 2 0 0 2 2 1 1 Prefoldin subunit Spc7 PF08317.11 gi|347523399|ref|YP_004780969.1| - 0.011 14.7 0.8 0.018 13.9 0.8 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein TACC_C PF05010.14 gi|347523399|ref|YP_004780969.1| - 0.011 15.6 1.1 0.021 14.6 1.1 1.5 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ADIP PF11559.8 gi|347523399|ref|YP_004780969.1| - 0.011 15.8 1.6 0.011 15.8 1.6 1.8 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding DUF2205 PF10224.9 gi|347523399|ref|YP_004780969.1| - 0.011 15.6 1.7 0.035 14.1 1.7 1.8 1 0 0 1 1 1 0 Short coiled-coil protein YabA PF06156.13 gi|347523399|ref|YP_004780969.1| - 0.012 16.2 0.3 0.028 15.0 0.3 1.6 1 0 0 1 1 1 0 Initiation control protein YabA MCU PF04678.13 gi|347523399|ref|YP_004780969.1| - 0.015 15.4 0.4 0.024 14.7 0.4 1.3 1 0 0 1 1 1 0 Mitochondrial calcium uniporter DivIC PF04977.15 gi|347523399|ref|YP_004780969.1| - 0.016 14.9 2.0 0.016 14.9 2.0 2.7 3 0 0 3 3 3 0 Septum formation initiator DUF4618 PF15397.6 gi|347523399|ref|YP_004780969.1| - 0.019 14.4 0.8 0.044 13.2 0.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) RHH_5 PF07878.11 gi|347523399|ref|YP_004780969.1| - 0.02 14.8 2.4 0.033 14.1 0.0 2.5 2 1 0 2 2 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 TSC22 PF01166.18 gi|347523399|ref|YP_004780969.1| - 0.023 15.0 2.9 0.07 13.5 2.4 2.1 2 0 0 2 2 1 0 TSC-22/dip/bun family Rho_Binding PF08912.11 gi|347523399|ref|YP_004780969.1| - 0.026 15.3 2.5 0.089 13.6 2.5 1.9 1 0 0 1 1 1 0 Rho Binding XhlA PF10779.9 gi|347523399|ref|YP_004780969.1| - 0.027 14.7 5.1 0.1 12.8 3.4 2.4 2 1 0 2 2 2 0 Haemolysin XhlA DUF1192 PF06698.11 gi|347523399|ref|YP_004780969.1| - 0.027 14.5 5.2 0.027 14.5 5.2 2.3 2 0 0 2 2 1 0 Protein of unknown function (DUF1192) DUF4795 PF16043.5 gi|347523399|ref|YP_004780969.1| - 0.028 14.1 3.2 0.1 12.2 3.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) EMP24_GP25L PF01105.24 gi|347523399|ref|YP_004780969.1| - 0.029 14.3 1.0 0.053 13.5 1.0 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DASH_Spc19 PF08287.11 gi|347523399|ref|YP_004780969.1| - 0.03 14.2 0.8 0.064 13.1 0.8 1.5 1 0 0 1 1 1 0 Spc19 DUF4763 PF15960.5 gi|347523399|ref|YP_004780969.1| - 0.033 13.5 0.8 0.06 12.7 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) EnY2 PF10163.9 gi|347523399|ref|YP_004780969.1| - 0.036 14.4 1.3 14 6.1 0.0 3.2 2 1 1 3 3 3 0 Transcription factor e(y)2 Prominin PF05478.11 gi|347523399|ref|YP_004780969.1| - 0.04 11.9 0.2 0.054 11.5 0.2 1.1 1 0 0 1 1 1 0 Prominin WASH_WAHD PF11945.8 gi|347523399|ref|YP_004780969.1| - 0.047 13.2 2.7 0.058 12.9 1.8 1.5 2 0 0 2 2 1 0 WAHD domain of WASH complex DUF2802 PF10975.8 gi|347523399|ref|YP_004780969.1| - 0.049 13.8 2.8 2.5 8.3 1.0 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF2802) FlxA PF14282.6 gi|347523399|ref|YP_004780969.1| - 0.049 13.6 0.6 0.089 12.8 0.6 1.3 1 0 0 1 1 1 0 FlxA-like protein DASH_Hsk3 PF08227.11 gi|347523399|ref|YP_004780969.1| - 0.05 14.0 0.2 0.11 12.8 0.2 1.5 1 0 0 1 1 1 0 DASH complex subunit Hsk3 like Csm1_N PF18504.1 gi|347523399|ref|YP_004780969.1| - 0.054 13.8 3.1 0.2 12.0 3.1 2.0 1 0 0 1 1 1 0 Csm1 N-terminal domain FapA PF03961.13 gi|347523399|ref|YP_004780969.1| - 0.055 12.1 0.1 0.074 11.6 0.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A RHH_1 PF01402.21 gi|347523399|ref|YP_004780969.1| - 0.065 13.2 0.1 0.065 13.2 0.1 4.0 4 0 0 4 4 2 0 Ribbon-helix-helix protein, copG family TolA_bind_tri PF16331.5 gi|347523399|ref|YP_004780969.1| - 0.065 13.3 4.6 0.051 13.7 1.8 2.2 2 0 0 2 2 2 0 TolA binding protein trimerisation OmpH PF03938.14 gi|347523399|ref|YP_004780969.1| - 0.068 13.5 4.7 4.6 7.6 3.6 3.0 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) HSBP1 PF06825.12 gi|347523399|ref|YP_004780969.1| - 0.079 12.8 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 Heat shock factor binding protein 1 BLOC1_2 PF10046.9 gi|347523399|ref|YP_004780969.1| - 0.08 13.3 2.1 0.16 12.3 1.3 1.9 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|347523399|ref|YP_004780969.1| - 0.1 13.1 0.1 0.31 11.5 0.1 1.8 2 0 0 2 2 1 0 Nucleopolyhedrovirus P10 protein Nup88 PF10168.9 gi|347523399|ref|YP_004780969.1| - 0.11 10.3 1.0 0.15 9.8 1.0 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF5446 PF17522.2 gi|347523399|ref|YP_004780969.1| - 0.11 12.7 6.1 0.39 10.9 4.2 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5446) DUF1664 PF07889.12 gi|347523399|ref|YP_004780969.1| - 0.14 12.2 0.9 0.28 11.2 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|347523399|ref|YP_004780969.1| - 0.14 10.3 3.7 0.063 11.4 1.7 1.4 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Spc24 PF08286.11 gi|347523399|ref|YP_004780969.1| - 0.15 12.4 0.8 0.35 11.1 0.8 1.7 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Cep57_MT_bd PF06657.13 gi|347523399|ref|YP_004780969.1| - 0.15 12.5 3.6 0.42 11.1 1.8 2.5 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF2730 PF10805.8 gi|347523399|ref|YP_004780969.1| - 0.15 12.1 0.8 0.63 10.2 0.6 2.1 3 0 0 3 3 1 0 Protein of unknown function (DUF2730) bZIP_1 PF00170.21 gi|347523399|ref|YP_004780969.1| - 0.15 12.1 11.3 0.12 12.5 3.5 2.6 2 0 0 2 2 2 0 bZIP transcription factor COG5 PF10392.9 gi|347523399|ref|YP_004780969.1| - 0.16 12.1 2.5 0.27 11.4 1.6 1.8 1 1 0 2 2 1 0 Golgi transport complex subunit 5 DUF948 PF06103.11 gi|347523399|ref|YP_004780969.1| - 0.17 12.1 0.1 0.34 11.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) SpmSyn_N PF17950.1 gi|347523399|ref|YP_004780969.1| - 0.39 10.9 2.8 2.7 8.2 0.0 2.8 1 1 2 3 3 2 0 S-adenosylmethionine decarboxylase N -terminal GAS PF13851.6 gi|347523399|ref|YP_004780969.1| - 0.4 10.0 6.1 1.7 8.0 6.2 1.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding GrpE PF01025.19 gi|347523399|ref|YP_004780969.1| - 0.41 10.3 5.1 0.9 9.2 4.9 1.7 1 1 0 1 1 1 0 GrpE JIP_LZII PF16471.5 gi|347523399|ref|YP_004780969.1| - 0.47 10.7 5.4 0.95 9.7 3.9 2.3 1 1 1 2 2 1 0 JNK-interacting protein leucine zipper II YvrJ PF12841.7 gi|347523399|ref|YP_004780969.1| - 0.55 9.8 1.8 30 4.2 0.0 2.7 2 0 0 2 2 2 0 YvrJ protein family Dzip-like_N PF13815.6 gi|347523399|ref|YP_004780969.1| - 0.68 9.9 5.0 1.6 8.8 3.4 2.2 1 1 1 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal PI3K_P85_iSH2 PF16454.5 gi|347523399|ref|YP_004780969.1| - 0.77 9.3 7.9 2.6 7.6 3.6 3.1 2 2 1 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain SlyX PF04102.12 gi|347523399|ref|YP_004780969.1| - 0.84 10.3 6.8 0.47 11.1 3.2 2.5 2 1 0 2 2 1 0 SlyX CorA PF01544.18 gi|347523399|ref|YP_004780969.1| - 0.87 8.9 4.0 0.75 9.1 0.8 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Ax_dynein_light PF10211.9 gi|347523399|ref|YP_004780969.1| - 1.1 9.2 6.3 4.5 7.2 6.3 2.1 1 1 0 1 1 1 0 Axonemal dynein light chain CENP-Q PF13094.6 gi|347523399|ref|YP_004780969.1| - 5.2 7.3 10.3 1.8 8.8 7.0 1.8 1 1 1 2 2 1 0 CENP-Q, a CENPA-CAD centromere complex subunit FUSC PF04632.12 gi|347523399|ref|YP_004780969.1| - 7 5.1 6.1 2.6 6.5 3.0 1.5 1 1 2 3 3 3 0 Fusaric acid resistance protein family PEPcase_2 PF14010.6 gi|347523400|ref|YP_004780970.1| - 6.5e-122 407.5 0.0 7.5e-122 407.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|347523400|ref|YP_004780970.1| - 0.016 13.3 0.0 0.022 12.8 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase Peptidase_M3_N PF08439.10 gi|347523400|ref|YP_004780970.1| - 0.16 12.3 0.1 0.46 10.8 0.1 1.8 1 0 0 1 1 1 0 Oligopeptidase F Thy1 PF02511.15 gi|347523402|ref|YP_004780972.1| - 7e-53 179.2 1.1 1.1e-52 178.6 1.1 1.3 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Peptidase_M55 PF04951.13 gi|347523403|ref|YP_004780973.1| - 1.8e-73 247.2 0.0 2.1e-73 247.0 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase DHquinase_I PF01487.15 gi|347523404|ref|YP_004780974.1| - 4e-15 56.7 0.0 4.7e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase DUF2336 PF10098.9 gi|347523404|ref|YP_004780974.1| - 0.019 14.4 0.6 0.034 13.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2336) Aminotran_5 PF00266.19 gi|347523405|ref|YP_004780975.1| - 4.4e-08 32.5 0.0 5.9e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|347523405|ref|YP_004780975.1| - 5.7e-08 32.0 0.0 9.4e-08 31.3 0.0 1.3 1 0 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|347523405|ref|YP_004780975.1| - 8.1e-06 25.3 0.0 1.4e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|347523406|ref|YP_004780976.1| - 7.1e-108 361.2 0.0 7.9e-108 361.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|347523406|ref|YP_004780976.1| - 0.00012 21.2 0.0 0.00027 20.0 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|347523406|ref|YP_004780976.1| - 0.0095 14.5 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|347523406|ref|YP_004780976.1| - 0.081 12.1 0.0 0.16 11.1 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class I and II DUF2258 PF10015.9 gi|347523407|ref|YP_004780977.1| - 4e-32 110.2 0.7 9.4e-32 109.0 0.7 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) FTA4 PF13093.6 gi|347523408|ref|YP_004780978.1| - 0.00031 20.7 1.3 0.053 13.4 0.1 2.1 2 0 0 2 2 2 2 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Vac_Fusion PF02346.16 gi|347523408|ref|YP_004780978.1| - 0.0095 15.5 2.1 0.26 10.9 0.3 2.6 2 1 0 2 2 2 1 Chordopoxvirus multifunctional envelope protein A27 FliJ PF02050.16 gi|347523408|ref|YP_004780978.1| - 0.0096 16.1 1.4 2.6 8.3 0.0 2.2 2 0 0 2 2 2 2 Flagellar FliJ protein WASH_WAHD PF11945.8 gi|347523408|ref|YP_004780978.1| - 0.021 14.4 0.4 0.28 10.7 0.1 2.0 2 0 0 2 2 2 0 WAHD domain of WASH complex Helo_like_N PF17111.5 gi|347523408|ref|YP_004780978.1| - 0.033 13.6 0.8 2.9 7.2 0.1 2.1 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins Prefoldin PF02996.17 gi|347523408|ref|YP_004780978.1| - 0.038 13.9 0.8 2.4 8.1 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit DUF4200 PF13863.6 gi|347523408|ref|YP_004780978.1| - 0.047 14.1 1.3 0.71 10.3 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) NOG1_N PF17835.1 gi|347523408|ref|YP_004780978.1| - 0.063 13.3 0.8 3 7.8 0.1 2.1 2 0 0 2 2 2 0 NOG1 N-terminal helical domain V-SNARE PF05008.15 gi|347523408|ref|YP_004780978.1| - 0.071 13.5 4.5 0.19 12.1 0.5 2.3 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus DUF713 PF05218.14 gi|347523408|ref|YP_004780978.1| - 0.091 12.5 0.0 0.4 10.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF713) Apolipoprotein PF01442.18 gi|347523408|ref|YP_004780978.1| - 0.12 12.2 3.7 1.5 8.6 3.7 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain RE_HindIII PF09518.10 gi|347523408|ref|YP_004780978.1| - 0.14 11.4 0.1 0.16 11.2 0.1 1.1 1 0 0 1 1 1 0 HindIII restriction endonuclease DHR10 PF18595.1 gi|347523408|ref|YP_004780978.1| - 0.18 11.9 3.0 1.7 8.7 0.2 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain COG2 PF06148.11 gi|347523408|ref|YP_004780978.1| - 0.31 11.1 2.0 2.1 8.4 1.4 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Trimer_CC PF08954.11 gi|347523408|ref|YP_004780978.1| - 3.9 7.1 8.0 1.6 8.3 2.9 2.5 2 1 0 2 2 2 0 Trimerisation motif SelP_N PF04592.14 gi|347523410|ref|YP_004780980.1| - 0.019 14.4 12.1 0.021 14.2 12.1 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region SHQ1 PF04925.15 gi|347523410|ref|YP_004780980.1| - 0.077 12.6 2.3 0.33 10.5 0.1 2.1 2 0 0 2 2 2 0 SHQ1 protein TetR_C_19 PF17924.1 gi|347523410|ref|YP_004780980.1| - 0.47 11.1 4.0 0.8 10.3 3.9 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain NTP_transf_2 PF01909.23 gi|347523411|ref|YP_004780981.1| - 0.11 12.8 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain PPDK_N PF01326.19 gi|347523414|ref|YP_004780984.1| - 3.7e-129 430.7 0.7 5.4e-129 430.2 0.7 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|347523414|ref|YP_004780984.1| - 3.2e-87 292.3 0.0 7.1e-87 291.2 0.0 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|347523414|ref|YP_004780984.1| - 3.7e-30 103.4 1.0 1e-29 102.0 1.0 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|347523414|ref|YP_004780984.1| - 0.013 14.6 0.0 0.033 13.3 0.0 1.6 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family Radical_SAM PF04055.21 gi|347523414|ref|YP_004780984.1| - 0.03 14.7 0.0 0.2 12.0 0.0 2.2 1 1 0 2 2 2 0 Radical SAM superfamily GHMP_kinases_C PF08544.13 gi|347523415|ref|YP_004780985.1| - 1.7e-16 60.4 0.6 1.7e-16 60.4 0.6 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|347523415|ref|YP_004780985.1| - 2.2e-16 59.8 0.6 2.2e-16 59.8 0.6 2.3 2 1 0 2 2 2 1 GHMP kinases N terminal domain Oxidored_q4 PF00507.19 gi|347523416|ref|YP_004780986.1| - 5.6e-07 29.6 0.1 1.2e-06 28.6 0.0 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ATP-synt_ab PF00006.25 gi|347523417|ref|YP_004780987.1| - 6.6e-90 300.4 0.0 9.3e-90 299.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|347523417|ref|YP_004780987.1| - 7.2e-48 161.4 0.0 1.4e-47 160.6 0.0 1.5 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|347523417|ref|YP_004780987.1| - 9.2e-15 54.9 1.0 2.5e-14 53.5 1.0 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|347523417|ref|YP_004780987.1| - 0.014 15.6 1.0 0.099 12.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain Esterase PF00756.20 gi|347523417|ref|YP_004780987.1| - 0.079 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Putative esterase AAA_6 PF12774.7 gi|347523417|ref|YP_004780987.1| - 0.18 10.8 0.2 0.45 9.4 0.0 1.6 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Peptidase_M17_N PF02789.17 gi|347523417|ref|YP_004780987.1| - 0.2 11.5 0.0 0.42 10.5 0.0 1.5 1 0 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Lyase_1 PF00206.20 gi|347523418|ref|YP_004780988.1| - 1.3e-42 146.3 0.0 1.9e-42 145.8 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|347523418|ref|YP_004780988.1| - 5.3e-14 52.5 0.7 1.8e-13 50.8 0.7 2.0 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.6 gi|347523418|ref|YP_004780988.1| - 0.0033 18.1 0.2 0.012 16.3 0.2 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|347523418|ref|YP_004780988.1| - 0.0088 16.4 0.0 0.043 14.2 0.0 2.3 1 0 0 1 1 1 1 Fumarase C C-terminus ASL_C PF08328.11 gi|347523418|ref|YP_004780988.1| - 0.067 13.3 0.2 0.21 11.7 0.1 2.0 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminal SIR2 PF02146.17 gi|347523419|ref|YP_004780989.1| - 7.6e-57 192.1 0.0 9.2e-57 191.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family RNA_POL_M_15KD PF02150.16 gi|347523419|ref|YP_004780989.1| - 0.14 12.0 3.0 0.8 9.6 0.4 2.7 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|347523419|ref|YP_004780989.1| - 0.37 10.8 2.2 5.7 6.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Bmp PF02608.14 gi|347523420|ref|YP_004780990.1| - 1.1e-45 156.0 0.0 2.8e-45 154.6 0.0 1.6 1 1 1 2 2 2 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|347523420|ref|YP_004780990.1| - 0.00018 21.2 0.1 0.0033 17.0 0.0 2.5 2 1 0 2 2 2 1 Periplasmic binding protein domain DUF2749 PF10907.8 gi|347523420|ref|YP_004780990.1| - 0.048 13.8 0.2 0.11 12.6 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF4148 PF13663.6 gi|347523420|ref|YP_004780990.1| - 0.081 13.1 0.3 0.16 12.2 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) ABC_tran PF00005.27 gi|347523421|ref|YP_004780991.1| - 6e-49 166.1 0.0 9.6e-30 103.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|347523421|ref|YP_004780991.1| - 8.9e-10 38.9 1.8 0.00034 20.5 0.3 2.8 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|347523421|ref|YP_004780991.1| - 0.006 16.3 0.0 0.071 12.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|347523421|ref|YP_004780991.1| - 0.015 15.0 0.2 0.92 9.2 0.1 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_23 PF13476.6 gi|347523421|ref|YP_004780991.1| - 0.021 15.3 0.0 0.031 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|347523421|ref|YP_004780991.1| - 0.024 15.0 0.1 0.091 13.1 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|347523421|ref|YP_004780991.1| - 0.029 14.1 0.2 0.25 11.0 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|347523421|ref|YP_004780991.1| - 0.031 14.7 0.1 0.26 11.7 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|347523421|ref|YP_004780991.1| - 0.081 12.8 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|347523421|ref|YP_004780991.1| - 0.083 13.2 0.2 0.85 9.9 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|347523421|ref|YP_004780991.1| - 0.096 12.4 0.1 8.9 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_27 PF13514.6 gi|347523421|ref|YP_004780991.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|347523421|ref|YP_004780991.1| - 0.14 12.0 0.0 0.44 10.3 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal SMC_N PF02463.19 gi|347523421|ref|YP_004780991.1| - 0.15 11.5 0.0 14 5.0 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF3584 PF12128.8 gi|347523421|ref|YP_004780991.1| - 0.21 9.1 0.0 0.28 8.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_15 PF13175.6 gi|347523421|ref|YP_004780991.1| - 0.21 11.2 0.0 2.3 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|347523422|ref|YP_004780992.1| - 1.6e-35 122.5 30.8 1.6e-35 122.5 30.8 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|347523423|ref|YP_004780993.1| - 7.9e-36 123.6 35.0 9.9e-36 123.3 35.0 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PRA1 PF03208.19 gi|347523423|ref|YP_004780993.1| - 0.033 13.8 5.6 5 6.7 3.1 2.6 2 0 0 2 2 2 0 PRA1 family protein DUF1129 PF06570.11 gi|347523423|ref|YP_004780993.1| - 0.3 10.5 4.8 0.39 10.2 4.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Gly_reductase PF09338.11 gi|347523424|ref|YP_004780994.1| - 0.22 9.8 0.0 0.33 9.3 0.0 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits LPG_synthase_TM PF03706.13 gi|347523425|ref|YP_004780995.1| - 8.7e-11 41.9 28.7 1.9e-10 40.8 28.7 1.5 1 1 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Semialdhyde_dhC PF02774.18 gi|347523426|ref|YP_004780996.1| - 6.9e-33 114.3 0.0 9.2e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|347523426|ref|YP_004780996.1| - 4.1e-30 104.7 0.0 7.3e-30 103.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.20 gi|347523426|ref|YP_004780996.1| - 9.4e-05 22.1 0.0 0.031 13.9 0.0 2.2 2 0 0 2 2 2 2 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|347523426|ref|YP_004780996.1| - 0.092 12.9 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus TrmB PF01978.19 gi|347523427|ref|YP_004780997.1| - 0.014 15.3 0.0 1.1 9.3 0.0 3.3 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Peptidase_C25 PF01364.18 gi|347523428|ref|YP_004780998.1| - 1.2e-31 110.3 0.0 2.1e-31 109.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family C25 Baculo_PEP_C PF04513.12 gi|347523428|ref|YP_004780998.1| - 3.9e-08 33.5 27.0 0.0023 18.0 2.5 3.3 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|347523428|ref|YP_004780998.1| - 2.6e-05 24.6 18.8 0.59 10.6 0.2 5.3 3 1 2 5 5 5 3 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|347523428|ref|YP_004780998.1| - 0.00015 21.8 19.5 0.00057 19.9 0.3 4.3 1 1 2 4 4 4 1 Protein of unknown function (DUF1664) COG2 PF06148.11 gi|347523428|ref|YP_004780998.1| - 0.00058 20.0 1.6 0.00058 20.0 1.6 4.0 1 1 3 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 Apolipoprotein PF01442.18 gi|347523428|ref|YP_004780998.1| - 0.00092 19.1 16.4 0.021 14.7 7.8 3.0 1 1 0 2 2 2 1 Apolipoprotein A1/A4/E domain Spc7 PF08317.11 gi|347523428|ref|YP_004780998.1| - 0.001 18.0 17.1 0.0084 15.0 6.0 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein Snapin_Pallidin PF14712.6 gi|347523428|ref|YP_004780998.1| - 0.0032 17.8 18.4 1 9.8 0.2 4.6 2 2 1 4 4 4 1 Snapin/Pallidin DUF4795 PF16043.5 gi|347523428|ref|YP_004780998.1| - 0.0097 15.5 11.9 0.12 11.9 3.9 2.3 1 1 0 2 2 2 2 Domain of unknown function (DUF4795) AAA_13 PF13166.6 gi|347523428|ref|YP_004780998.1| - 0.014 14.1 10.0 0.022 13.5 10.0 1.2 1 0 0 1 1 1 0 AAA domain IFT57 PF10498.9 gi|347523428|ref|YP_004780998.1| - 0.018 14.0 12.9 0.027 13.5 4.2 2.6 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 RsbU_N PF08673.10 gi|347523428|ref|YP_004780998.1| - 0.029 14.5 3.9 3.5 7.8 0.5 2.7 1 1 1 2 2 2 0 Phosphoserine phosphatase RsbU, N-terminal domain WASH_WAHD PF11945.8 gi|347523428|ref|YP_004780998.1| - 0.029 13.9 0.9 0.36 10.3 0.2 2.4 2 0 0 2 2 2 0 WAHD domain of WASH complex FliJ PF02050.16 gi|347523428|ref|YP_004780998.1| - 0.032 14.4 8.4 4.6 7.5 3.2 3.2 2 1 1 3 3 3 0 Flagellar FliJ protein DUF16 PF01519.16 gi|347523428|ref|YP_004780998.1| - 0.035 14.6 10.6 1.6 9.3 0.1 3.9 2 1 1 3 3 3 0 Protein of unknown function DUF16 XhlA PF10779.9 gi|347523428|ref|YP_004780998.1| - 0.036 14.3 18.9 0.45 10.8 0.9 5.0 3 2 4 7 7 7 0 Haemolysin XhlA HAUS-augmin3 PF14932.6 gi|347523428|ref|YP_004780998.1| - 0.04 13.5 12.7 1.2 8.6 1.2 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Tektin PF03148.14 gi|347523428|ref|YP_004780998.1| - 0.041 12.6 10.3 0.2 10.4 1.6 2.5 2 0 0 2 2 2 0 Tektin family DUF948 PF06103.11 gi|347523428|ref|YP_004780998.1| - 0.054 13.8 18.8 3 8.2 1.7 4.5 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.8 gi|347523428|ref|YP_004780998.1| - 0.058 12.7 0.1 0.058 12.7 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) APG17 PF04108.12 gi|347523428|ref|YP_004780998.1| - 0.061 12.4 16.5 0.87 8.6 15.8 2.4 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF2408 PF10303.9 gi|347523428|ref|YP_004780998.1| - 0.065 13.8 13.6 0.15 12.6 0.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2408) Laminin_II PF06009.12 gi|347523428|ref|YP_004780998.1| - 0.069 13.2 22.6 0.32 11.0 2.7 4.1 1 1 3 4 4 4 0 Laminin Domain II ABC_tran_CTD PF16326.5 gi|347523428|ref|YP_004780998.1| - 0.076 13.3 13.6 0.63 10.3 2.1 3.7 2 1 1 3 3 3 0 ABC transporter C-terminal domain FPP PF05911.11 gi|347523428|ref|YP_004780998.1| - 0.086 11.0 14.3 0.86 7.7 8.8 2.1 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil VirD1 PF07328.11 gi|347523428|ref|YP_004780998.1| - 0.095 12.7 0.2 0.26 11.3 0.2 1.8 1 0 0 1 1 1 0 T-DNA border endonuclease VirD1 Tropomyosin_1 PF12718.7 gi|347523428|ref|YP_004780998.1| - 0.1 12.7 11.1 0.26 11.4 0.0 3.2 1 1 1 3 3 3 0 Tropomyosin like KNOX2 PF03791.13 gi|347523428|ref|YP_004780998.1| - 0.12 11.9 0.2 0.34 10.5 0.2 1.7 1 0 0 1 1 1 0 KNOX2 domain DUF883 PF05957.13 gi|347523428|ref|YP_004780998.1| - 0.13 12.9 11.0 0.17 12.5 2.3 3.9 4 0 0 4 4 2 0 Bacterial protein of unknown function (DUF883) Latarcin PF10279.9 gi|347523428|ref|YP_004780998.1| - 0.15 12.5 5.0 13 6.2 5.0 3.1 1 1 0 1 1 1 0 Latarcin precursor Syntaxin-6_N PF09177.11 gi|347523428|ref|YP_004780998.1| - 0.16 12.6 14.5 2 9.0 2.2 3.7 2 1 1 3 3 3 0 Syntaxin 6, N-terminal PspA_IM30 PF04012.12 gi|347523428|ref|YP_004780998.1| - 0.18 11.4 12.9 0.045 13.3 6.3 2.2 1 1 1 2 2 2 0 PspA/IM30 family DUF720 PF05302.11 gi|347523428|ref|YP_004780998.1| - 0.19 11.6 1.9 0.15 11.9 0.1 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF720) Rab5-bind PF09311.11 gi|347523428|ref|YP_004780998.1| - 0.19 11.1 15.2 0.29 10.5 14.7 1.5 1 1 0 1 1 1 0 Rabaptin-like protein Exonuc_VII_L PF02601.15 gi|347523428|ref|YP_004780998.1| - 0.22 11.1 10.7 0.24 10.9 1.5 2.3 1 1 1 2 2 2 0 Exonuclease VII, large subunit TMPIT PF07851.13 gi|347523428|ref|YP_004780998.1| - 0.24 10.6 3.7 2.2 7.5 0.2 2.4 1 1 1 2 2 2 0 TMPIT-like protein Serine_rich PF08824.10 gi|347523428|ref|YP_004780998.1| - 0.25 11.3 9.5 2.6 8.0 1.5 3.4 3 0 0 3 3 3 0 Serine rich protein interaction domain ATG16 PF08614.11 gi|347523428|ref|YP_004780998.1| - 0.25 11.5 14.7 1.7 8.8 3.1 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Jnk-SapK_ap_N PF09744.9 gi|347523428|ref|YP_004780998.1| - 0.27 11.4 14.1 0.23 11.7 3.0 2.8 1 1 2 3 3 2 0 JNK_SAPK-associated protein-1 KxDL PF10241.9 gi|347523428|ref|YP_004780998.1| - 0.28 11.5 12.8 8.4 6.7 0.4 4.4 2 1 2 4 4 4 0 Uncharacterized conserved protein CorA PF01544.18 gi|347523428|ref|YP_004780998.1| - 0.29 10.4 18.7 0.24 10.7 5.6 3.0 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein CHASE3 PF05227.13 gi|347523428|ref|YP_004780998.1| - 0.31 10.9 7.1 0.072 13.0 2.0 2.4 2 0 0 2 2 2 0 CHASE3 domain Fib_alpha PF08702.10 gi|347523428|ref|YP_004780998.1| - 0.31 11.2 15.5 0.28 11.4 0.9 3.7 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family MscS_porin PF12795.7 gi|347523428|ref|YP_004780998.1| - 0.32 10.5 15.6 1.4 8.4 1.8 2.9 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain ADIP PF11559.8 gi|347523428|ref|YP_004780998.1| - 0.32 11.1 8.8 4 7.5 0.1 3.2 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding DUF4200 PF13863.6 gi|347523428|ref|YP_004780998.1| - 0.38 11.2 4.3 3.4 8.1 1.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) BLOC1_2 PF10046.9 gi|347523428|ref|YP_004780998.1| - 0.38 11.1 19.4 2.5 8.5 2.5 4.5 2 1 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG5 PF10392.9 gi|347523428|ref|YP_004780998.1| - 0.43 10.8 20.4 0.3 11.3 3.6 4.4 1 1 3 4 4 4 0 Golgi transport complex subunit 5 DUF812 PF05667.11 gi|347523428|ref|YP_004780998.1| - 0.48 9.2 14.5 0.34 9.8 1.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) CLZ PF16526.5 gi|347523428|ref|YP_004780998.1| - 0.5 10.8 15.1 2.2 8.7 0.0 4.9 3 2 1 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ApoLp-III PF07464.11 gi|347523428|ref|YP_004780998.1| - 0.53 10.4 8.1 1.3 9.1 2.4 3.3 1 1 4 5 5 5 0 Apolipophorin-III precursor (apoLp-III) Mer2 PF09074.10 gi|347523428|ref|YP_004780998.1| - 0.67 9.7 20.0 0.2 11.5 7.6 3.2 2 1 1 3 3 3 0 Mer2 Prominin PF05478.11 gi|347523428|ref|YP_004780998.1| - 0.72 7.7 15.8 0.26 9.2 11.1 1.9 1 1 1 2 2 2 0 Prominin BRE1 PF08647.11 gi|347523428|ref|YP_004780998.1| - 0.73 9.9 9.7 20 5.3 0.0 4.0 2 2 2 4 4 4 0 BRE1 E3 ubiquitin ligase FapA PF03961.13 gi|347523428|ref|YP_004780998.1| - 0.88 8.1 11.3 3.2 6.3 5.7 2.6 1 1 2 3 3 3 0 Flagellar Assembly Protein A LMBR1 PF04791.16 gi|347523428|ref|YP_004780998.1| - 0.97 8.3 7.1 1.5 7.6 4.4 2.0 1 1 1 2 2 2 0 LMBR1-like membrane protein DUF3251 PF11622.8 gi|347523428|ref|YP_004780998.1| - 1 9.0 6.8 4.8 6.8 0.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3251) Tmemb_cc2 PF10267.9 gi|347523428|ref|YP_004780998.1| - 1 8.4 14.0 3.6 6.6 1.9 2.6 1 1 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein APG6_N PF17675.1 gi|347523428|ref|YP_004780998.1| - 1.1 9.8 16.6 1.2 9.7 3.2 2.9 2 1 0 3 3 2 0 Apg6 coiled-coil region TRPM_tetra PF16519.5 gi|347523428|ref|YP_004780998.1| - 1.2 9.3 5.7 5.7 7.1 0.6 4.0 3 1 0 3 3 2 0 Tetramerisation domain of TRPM RasGAP_C PF03836.15 gi|347523428|ref|YP_004780998.1| - 1.3 9.2 10.8 0.56 10.4 4.3 2.9 1 1 1 3 3 3 0 RasGAP C-terminus FmiP_Thoc5 PF09766.9 gi|347523428|ref|YP_004780998.1| - 1.3 8.3 10.0 2.1 7.6 0.9 2.9 1 1 2 3 3 3 0 Fms-interacting protein/Thoc5 DUF2203 PF09969.9 gi|347523428|ref|YP_004780998.1| - 1.3 9.7 9.7 7.8 7.2 0.5 3.2 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) HrpB7 PF09486.10 gi|347523428|ref|YP_004780998.1| - 2.2 8.7 8.9 5.4 7.4 2.9 3.0 2 1 0 3 3 2 0 Bacterial type III secretion protein (HrpB7) UPF0242 PF06785.11 gi|347523428|ref|YP_004780998.1| - 2.2 8.3 10.9 0.49 10.5 3.8 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Occludin_ELL PF07303.13 gi|347523428|ref|YP_004780998.1| - 2.5 8.9 3.9 19 6.0 0.2 3.3 2 1 2 4 4 2 0 Occludin homology domain DUF1484 PF07363.11 gi|347523428|ref|YP_004780998.1| - 2.6 9.1 6.3 0.9 10.6 0.5 2.8 2 1 1 3 3 2 0 Protein of unknown function (DUF1484) DUF4140 PF13600.6 gi|347523428|ref|YP_004780998.1| - 2.6 8.5 6.0 11 6.5 0.2 3.6 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Atg14 PF10186.9 gi|347523428|ref|YP_004780998.1| - 2.6 7.0 9.1 1.7 7.7 4.0 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 YscO PF07321.12 gi|347523428|ref|YP_004780998.1| - 2.7 7.9 9.0 3.8 7.4 5.4 2.7 1 1 1 2 2 2 0 Type III secretion protein YscO Hormone_1 PF00103.20 gi|347523428|ref|YP_004780998.1| - 2.8 7.6 6.0 15 5.2 1.5 2.4 1 1 1 2 2 2 0 Somatotropin hormone family Nsp1_C PF05064.13 gi|347523428|ref|YP_004780998.1| - 2.8 7.8 10.2 0.46 10.3 0.7 2.9 3 0 0 3 3 2 0 Nsp1-like C-terminal region DHR10 PF18595.1 gi|347523428|ref|YP_004780998.1| - 2.9 8.0 17.3 3 7.9 1.9 3.6 2 1 1 4 4 3 0 Designed helical repeat protein 10 domain Flagellin_N PF00669.20 gi|347523428|ref|YP_004780998.1| - 3.2 7.8 8.2 0.73 9.9 1.5 2.4 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region Bacillus_HBL PF05791.11 gi|347523428|ref|YP_004780998.1| - 3.4 7.5 10.4 1.4 8.7 1.4 3.2 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) SlyX PF04102.12 gi|347523428|ref|YP_004780998.1| - 3.6 8.3 13.8 7.1 7.3 3.0 4.5 1 1 4 5 5 5 0 SlyX MitMem_reg PF13012.6 gi|347523428|ref|YP_004780998.1| - 3.8 8.0 10.6 1e+03 0.2 10.6 2.9 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function AATF-Che1 PF13339.6 gi|347523428|ref|YP_004780998.1| - 4.1 8.1 8.6 18 6.0 5.4 2.7 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF4164 PF13747.6 gi|347523428|ref|YP_004780998.1| - 5.6 7.3 21.7 12 6.3 1.8 4.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4164) SKA2 PF16740.5 gi|347523428|ref|YP_004780998.1| - 5.6 6.8 13.9 10 6.0 0.1 3.6 1 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 TPR_MLP1_2 PF07926.12 gi|347523428|ref|YP_004780998.1| - 5.7 7.0 14.1 1.3 9.1 4.9 2.6 1 1 1 2 2 1 0 TPR/MLP1/MLP2-like protein YabA PF06156.13 gi|347523428|ref|YP_004780998.1| - 5.7 7.6 13.6 12 6.6 2.5 3.9 1 1 2 3 3 3 0 Initiation control protein YabA SbcD_C PF12320.8 gi|347523428|ref|YP_004780998.1| - 7.1 7.0 11.8 3.9 7.9 0.7 3.4 4 0 0 4 4 2 0 Type 5 capsule protein repressor C-terminal domain Enkurin PF13864.6 gi|347523428|ref|YP_004780998.1| - 7.4 7.1 6.8 4 7.9 1.4 2.4 2 0 0 2 2 2 0 Calmodulin-binding DUF1515 PF07439.11 gi|347523428|ref|YP_004780998.1| - 8.5 6.4 13.1 4.1 7.5 0.2 3.7 2 2 2 4 4 4 0 Protein of unknown function (DUF1515) DUF5082 PF16888.5 gi|347523428|ref|YP_004780998.1| - 8.7 6.6 14.2 5.6 7.3 0.0 3.7 2 1 2 4 4 3 0 Domain of unknown function (DUF5082) Fzo_mitofusin PF04799.13 gi|347523428|ref|YP_004780998.1| - 8.9 5.8 16.1 2 8.0 1.2 4.4 1 1 2 4 4 4 0 fzo-like conserved region IFT20 PF14931.6 gi|347523428|ref|YP_004780998.1| - 9.5 6.4 10.1 5.7 7.1 3.0 2.9 3 0 0 3 3 2 0 Intraflagellar transport complex B, subunit 20 CREPT PF16566.5 gi|347523428|ref|YP_004780998.1| - 9.7 6.3 17.7 4 7.6 3.5 4.3 2 1 1 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour ING PF12998.7 gi|347523428|ref|YP_004780998.1| - 10 6.8 13.6 6.8 7.3 2.3 3.5 2 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding HD PF01966.22 gi|347523429|ref|YP_004780999.1| - 1.2e-05 25.5 0.8 8.9e-05 22.7 0.8 2.4 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|347523429|ref|YP_004780999.1| - 0.07 12.6 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 HDOD domain HemN_C PF06969.16 gi|347523430|ref|YP_004781000.1| - 0.04 14.0 0.2 0.23 11.5 0.1 2.1 1 1 1 2 2 2 0 HemN C-terminal domain Radical_SAM PF04055.21 gi|347523430|ref|YP_004781000.1| - 0.081 13.3 0.1 0.099 13.0 0.1 1.1 1 0 0 1 1 1 0 Radical SAM superfamily Hydantoinase_A PF01968.18 gi|347523431|ref|YP_004781001.1| - 3.9e-95 318.5 0.2 1.5e-94 316.6 0.1 1.8 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|347523431|ref|YP_004781001.1| - 4.7e-31 107.9 0.0 1.2e-30 106.5 0.0 1.7 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region EutA PF06277.11 gi|347523431|ref|YP_004781001.1| - 0.086 11.7 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutA HTH_11 PF08279.12 gi|347523431|ref|YP_004781001.1| - 0.13 12.2 0.0 0.34 10.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain MutL PF13941.6 gi|347523431|ref|YP_004781001.1| - 0.14 10.7 0.3 0.73 8.4 0.0 1.9 2 0 0 2 2 2 0 MutL protein SBP_bac_1 PF01547.25 gi|347523432|ref|YP_004781002.1| - 2.1e-19 70.6 7.5 1.1e-18 68.3 7.5 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|347523433|ref|YP_004781003.1| - 5e-13 49.2 20.7 5e-13 49.2 20.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|347523433|ref|YP_004781003.1| - 0.017 15.2 1.0 0.017 15.2 1.0 2.0 2 0 0 2 2 2 0 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|347523434|ref|YP_004781004.1| - 2.9e-12 46.7 18.4 2.9e-12 46.7 18.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|347523435|ref|YP_004781005.1| - 6.1e-36 124.0 0.0 8.5e-36 123.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523435|ref|YP_004781005.1| - 1.2e-09 38.5 1.8 0.00085 19.2 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|347523435|ref|YP_004781005.1| - 6.7e-05 23.0 0.0 0.00016 21.7 0.0 1.7 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|347523435|ref|YP_004781005.1| - 7.7e-05 22.2 0.2 0.35 10.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|347523435|ref|YP_004781005.1| - 0.00048 20.7 0.1 0.00095 19.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain OB_MalK PF17912.1 gi|347523435|ref|YP_004781005.1| - 0.00064 20.5 0.0 0.002 18.9 0.0 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_29 PF13555.6 gi|347523435|ref|YP_004781005.1| - 0.00075 19.2 0.1 0.0016 18.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TOBE PF03459.17 gi|347523435|ref|YP_004781005.1| - 0.0061 16.8 0.6 0.03 14.6 0.3 2.3 2 0 0 2 2 2 1 TOBE domain RsgA_GTPase PF03193.16 gi|347523435|ref|YP_004781005.1| - 0.016 15.2 0.0 0.069 13.1 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|347523435|ref|YP_004781005.1| - 0.02 14.5 0.1 0.089 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|347523435|ref|YP_004781005.1| - 0.025 14.3 0.0 0.056 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|347523435|ref|YP_004781005.1| - 0.026 15.0 0.0 0.13 12.7 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|347523435|ref|YP_004781005.1| - 0.051 14.0 0.1 0.39 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_15 PF13175.6 gi|347523435|ref|YP_004781005.1| - 0.08 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|347523435|ref|YP_004781005.1| - 0.16 11.9 0.3 0.77 9.7 0.1 2.1 2 0 0 2 2 2 0 NACHT domain G-alpha PF00503.20 gi|347523435|ref|YP_004781005.1| - 0.16 11.1 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_22 PF13401.6 gi|347523435|ref|YP_004781005.1| - 0.17 12.1 1.5 0.53 10.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|347523435|ref|YP_004781005.1| - 0.51 9.1 2.5 3 6.5 0.1 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Auto_anti-p27 PF06677.12 gi|347523438|ref|YP_004781008.1| - 6.1e-15 55.1 0.1 8.9e-15 54.6 0.1 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) MqsA_antitoxin PF15731.5 gi|347523438|ref|YP_004781008.1| - 0.06 13.5 0.1 0.11 12.6 0.1 1.3 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-ribbon_3 PF13248.6 gi|347523438|ref|YP_004781008.1| - 0.11 12.0 0.9 0.35 10.3 0.9 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ZPR1 PF03367.13 gi|347523438|ref|YP_004781008.1| - 0.37 10.6 1.8 1 9.2 0.1 2.3 1 1 2 3 3 3 0 ZPR1 zinc-finger domain tRNA-synt_1g PF09334.11 gi|347523439|ref|YP_004781009.1| - 3.7e-161 536.2 0.0 4.4e-161 536.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|347523439|ref|YP_004781009.1| - 1.2e-15 56.8 0.2 7.7e-09 34.3 0.0 3.8 2 2 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|347523439|ref|YP_004781009.1| - 1.9e-11 44.1 0.0 3.5e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|347523439|ref|YP_004781009.1| - 0.00022 20.7 0.0 0.032 13.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|347523439|ref|YP_004781009.1| - 0.038 12.9 0.0 3.4 6.5 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) TerY_C PF15616.6 gi|347523439|ref|YP_004781009.1| - 0.056 13.6 0.4 0.098 12.8 0.4 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain zf-Di19 PF05605.12 gi|347523439|ref|YP_004781009.1| - 0.077 13.3 1.8 0.17 12.2 1.8 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF35_N PF12172.8 gi|347523439|ref|YP_004781009.1| - 0.21 11.5 2.1 4 7.4 0.5 2.8 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|347523439|ref|YP_004781009.1| - 0.58 10.2 4.3 1.2 9.2 4.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|347523439|ref|YP_004781009.1| - 0.71 9.8 4.6 3.1 7.7 1.6 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-RING_7 PF02591.15 gi|347523439|ref|YP_004781009.1| - 4.4 7.6 7.6 1.9 8.7 0.4 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347523439|ref|YP_004781009.1| - 6.7 6.6 8.8 4 7.3 0.3 3.0 2 1 0 2 2 2 0 zinc-ribbon domain TIM PF00121.18 gi|347523440|ref|YP_004781010.1| - 1.3e-13 50.9 0.0 3e-12 46.4 0.0 2.0 1 1 0 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|347523440|ref|YP_004781010.1| - 1.1e-08 34.7 0.4 2.1e-08 33.8 0.4 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|347523440|ref|YP_004781010.1| - 1.4e-06 27.4 1.1 1.6e-05 23.9 0.3 2.3 2 0 0 2 2 2 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|347523440|ref|YP_004781010.1| - 6.5e-05 22.5 0.1 9.1e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.21 gi|347523440|ref|YP_004781010.1| - 0.00064 19.0 0.0 0.001 18.3 0.0 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|347523440|ref|YP_004781010.1| - 0.0019 17.7 0.3 0.028 13.9 0.1 2.2 1 1 0 2 2 2 1 PcrB family NMO PF03060.15 gi|347523440|ref|YP_004781010.1| - 0.013 14.9 0.9 0.017 14.5 0.6 1.4 1 1 0 1 1 1 0 Nitronate monooxygenase FMN_dh PF01070.18 gi|347523440|ref|YP_004781010.1| - 0.02 14.0 0.3 0.029 13.4 0.3 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Adenylsucc_synt PF00709.21 gi|347523441|ref|YP_004781011.1| - 1.5e-77 261.3 4.7 4.2e-37 128.1 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pyr_redox_2 PF07992.14 gi|347523442|ref|YP_004781012.1| - 1.1e-14 54.4 0.8 4.1e-05 22.9 0.2 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|347523442|ref|YP_004781012.1| - 1.9e-09 37.6 2.0 1.2e-05 25.1 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|347523442|ref|YP_004781012.1| - 2.5e-09 36.7 1.5 1.3e-05 24.5 0.0 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|347523442|ref|YP_004781012.1| - 3.4e-09 35.9 0.1 0.00046 19.0 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|347523442|ref|YP_004781012.1| - 1.2e-07 31.4 3.1 0.0002 20.7 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|347523442|ref|YP_004781012.1| - 4.5e-06 26.0 7.6 0.0013 17.9 1.3 3.1 3 0 0 3 3 3 3 FAD binding domain NAD_binding_9 PF13454.6 gi|347523442|ref|YP_004781012.1| - 2.4e-05 24.4 0.2 0.038 14.0 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|347523442|ref|YP_004781012.1| - 0.0011 18.3 0.1 0.025 13.8 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|347523442|ref|YP_004781012.1| - 0.003 16.7 0.4 0.14 11.2 0.3 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|347523442|ref|YP_004781012.1| - 0.0034 17.9 0.3 0.095 13.3 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|347523442|ref|YP_004781012.1| - 0.0085 15.4 0.2 0.015 14.6 0.2 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|347523442|ref|YP_004781012.1| - 0.013 15.7 0.4 0.039 14.2 0.4 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MatK_N PF01824.18 gi|347523443|ref|YP_004781013.1| - 0.03 14.0 0.0 0.04 13.6 0.0 1.1 1 0 0 1 1 1 0 MatK/TrnK amino terminal region PBP_like_2 PF12849.7 gi|347523444|ref|YP_004781014.1| - 9.5e-47 160.0 0.5 1.2e-46 159.6 0.5 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|347523444|ref|YP_004781014.1| - 1e-13 52.0 7.1 4.1e-13 50.0 7.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|347523444|ref|YP_004781014.1| - 4.1e-09 35.9 0.0 1.4e-08 34.1 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain Ribosomal_S13_N PF08069.12 gi|347523445|ref|YP_004781015.1| - 1.4e-24 85.9 0.0 2.7e-24 85.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|347523445|ref|YP_004781015.1| - 7.9e-16 58.0 0.4 1.3e-15 57.4 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.16 gi|347523445|ref|YP_004781015.1| - 0.13 12.7 0.1 12 6.4 0.0 2.1 2 0 0 2 2 2 0 RecX family DUF3670 PF12419.8 gi|347523445|ref|YP_004781015.1| - 0.15 11.9 0.0 18 5.2 0.0 2.2 2 0 0 2 2 2 0 SNF2 Helicase protein PBP PF01161.20 gi|347523446|ref|YP_004781016.1| - 1.6e-18 67.3 0.3 2.1e-18 66.9 0.3 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein NurA PF09376.10 gi|347523447|ref|YP_004781017.1| - 5.1e-07 29.6 0.1 7.2e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 NurA domain PfkB PF00294.24 gi|347523448|ref|YP_004781018.1| - 2.4e-41 142.0 0.1 3.1e-41 141.7 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CxxCxxCC PF03692.15 gi|347523449|ref|YP_004781019.1| - 1.8e-12 47.8 7.0 2.4e-12 47.4 7.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain GntR PF00392.21 gi|347523450|ref|YP_004781020.1| - 0.00016 21.3 1.2 0.00036 20.1 0.3 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|347523450|ref|YP_004781020.1| - 0.0048 16.7 0.8 0.0093 15.8 0.1 1.9 2 0 0 2 2 2 1 MarR family HemN_C PF06969.16 gi|347523450|ref|YP_004781020.1| - 0.0076 16.3 0.0 0.055 13.6 0.0 2.4 2 0 0 2 2 2 1 HemN C-terminal domain Sulfolobus_pRN PF05584.11 gi|347523450|ref|YP_004781020.1| - 0.088 12.9 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein PheRS_DBD1 PF18552.1 gi|347523450|ref|YP_004781020.1| - 0.1 12.4 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 PheRS DNA binding domain 1 AAA PF00004.29 gi|347523451|ref|YP_004781021.1| - 4.1e-39 134.0 0.0 1.1e-38 132.7 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|347523451|ref|YP_004781021.1| - 1.3e-11 44.1 0.0 2.8e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain MIT PF04212.18 gi|347523451|ref|YP_004781021.1| - 2.8e-10 40.1 1.7 7.3e-10 38.8 1.7 1.7 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_2 PF07724.14 gi|347523451|ref|YP_004781021.1| - 1.1e-07 32.2 0.0 1.9e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|347523451|ref|YP_004781021.1| - 3.1e-07 30.5 0.3 3.7e-06 27.0 0.1 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Vps4_C PF09336.10 gi|347523451|ref|YP_004781021.1| - 2e-06 27.7 0.0 1.1e-05 25.3 0.0 2.2 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_22 PF13401.6 gi|347523451|ref|YP_004781021.1| - 4.2e-06 27.1 0.0 0.00027 21.2 0.0 2.6 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|347523451|ref|YP_004781021.1| - 1e-05 25.3 0.2 0.00027 20.7 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|347523451|ref|YP_004781021.1| - 1.5e-05 25.4 0.0 0.006 17.0 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|347523451|ref|YP_004781021.1| - 2.7e-05 24.2 0.0 9e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|347523451|ref|YP_004781021.1| - 4.4e-05 23.1 0.5 0.049 13.2 0.1 2.5 1 1 1 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|347523451|ref|YP_004781021.1| - 0.00016 21.7 0.1 0.62 9.9 0.1 2.6 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea TPR_11 PF13414.6 gi|347523451|ref|YP_004781021.1| - 0.00016 21.2 0.3 0.0003 20.4 0.3 1.4 1 0 0 1 1 1 1 TPR repeat AAA_24 PF13479.6 gi|347523451|ref|YP_004781021.1| - 0.00049 19.9 0.1 0.0043 16.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain TPR_1 PF00515.28 gi|347523451|ref|YP_004781021.1| - 0.00085 19.0 0.3 0.0027 17.5 0.3 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TIP49 PF06068.13 gi|347523451|ref|YP_004781021.1| - 0.0012 18.1 0.0 0.0026 17.0 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|347523451|ref|YP_004781021.1| - 0.0025 17.6 0.0 0.0051 16.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Bac_DnaA PF00308.18 gi|347523451|ref|YP_004781021.1| - 0.0028 17.5 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial dnaA protein Mg_chelatase PF01078.21 gi|347523451|ref|YP_004781021.1| - 0.0029 17.0 0.0 0.0066 15.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|347523451|ref|YP_004781021.1| - 0.003 17.9 0.0 0.012 16.0 0.0 2.2 1 1 0 1 1 1 1 RNA helicase ATPase PF06745.13 gi|347523451|ref|YP_004781021.1| - 0.0032 16.9 0.1 2.2 7.6 0.0 2.6 1 1 1 2 2 2 1 KaiC AAA_17 PF13207.6 gi|347523451|ref|YP_004781021.1| - 0.0058 17.1 0.1 0.033 14.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|347523451|ref|YP_004781021.1| - 0.0067 16.2 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.6 gi|347523451|ref|YP_004781021.1| - 0.007 16.9 0.0 0.034 14.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain TPR_2 PF07719.17 gi|347523451|ref|YP_004781021.1| - 0.0083 16.2 0.3 0.0083 16.2 0.3 2.8 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|347523451|ref|YP_004781021.1| - 0.012 15.9 0.4 0.049 13.9 0.2 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat Zeta_toxin PF06414.12 gi|347523451|ref|YP_004781021.1| - 0.016 14.5 0.0 0.061 12.6 0.0 2.0 1 0 0 1 1 1 0 Zeta toxin TPR_8 PF13181.6 gi|347523451|ref|YP_004781021.1| - 0.017 15.3 1.8 0.026 14.7 0.2 2.2 2 0 0 2 2 1 0 Tetratricopeptide repeat AAA_33 PF13671.6 gi|347523451|ref|YP_004781021.1| - 0.018 15.2 0.0 0.042 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|347523451|ref|YP_004781021.1| - 0.019 15.5 0.0 0.038 14.5 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.6 gi|347523451|ref|YP_004781021.1| - 0.02 15.1 0.0 0.049 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain SHNi-TPR PF10516.9 gi|347523451|ref|YP_004781021.1| - 0.022 14.2 0.0 0.052 13.0 0.0 1.6 1 0 0 1 1 1 0 SHNi-TPR AAA_7 PF12775.7 gi|347523451|ref|YP_004781021.1| - 0.03 13.9 0.0 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region NACHT PF05729.12 gi|347523451|ref|YP_004781021.1| - 0.03 14.2 0.0 0.062 13.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 gi|347523451|ref|YP_004781021.1| - 0.031 14.0 0.1 0.16 11.6 0.1 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|347523451|ref|YP_004781021.1| - 0.076 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain TPR_6 PF13174.6 gi|347523451|ref|YP_004781021.1| - 0.081 13.6 1.4 0.26 12.0 0.2 2.5 2 0 0 2 2 1 0 Tetratricopeptide repeat DnaB_C PF03796.15 gi|347523451|ref|YP_004781021.1| - 0.13 11.5 0.1 16 4.7 0.0 2.5 2 1 1 3 3 2 0 DnaB-like helicase C terminal domain ResIII PF04851.15 gi|347523451|ref|YP_004781021.1| - 0.13 12.2 0.0 0.28 11.2 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit NRBF2_MIT PF17169.4 gi|347523451|ref|YP_004781021.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 MIT domain of nuclear receptor-binding factor 2 TPR_14 PF13428.6 gi|347523451|ref|YP_004781021.1| - 0.15 12.9 0.3 2.3 9.2 0.2 3.0 2 1 0 2 2 1 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|347523451|ref|YP_004781021.1| - 0.16 12.0 0.1 0.49 10.6 0.1 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat ATP-synt_ab PF00006.25 gi|347523451|ref|YP_004781021.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NurA PF09376.10 gi|347523452|ref|YP_004781022.1| - 4.9e-10 39.5 0.0 8.2e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|347523453|ref|YP_004781023.1| - 2.2e-28 99.9 0.0 3.1e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|347523453|ref|YP_004781023.1| - 0.0042 16.0 0.0 0.017 14.1 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|347523453|ref|YP_004781023.1| - 0.041 14.2 0.1 5.2 7.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain SWIM PF04434.17 gi|347523454|ref|YP_004781024.1| - 0.0002 20.9 0.2 0.00032 20.3 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger GDPD PF03009.17 gi|347523455|ref|YP_004781025.1| - 6.9e-32 111.2 0.0 4.2e-31 108.6 0.0 1.9 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|347523455|ref|YP_004781025.1| - 0.0047 16.5 0.0 0.0083 15.7 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylinositol-specific phospholipase C, X domain IF3_N PF05198.16 gi|347523455|ref|YP_004781025.1| - 0.0079 16.4 0.3 2.4 8.5 0.0 2.9 3 0 0 3 3 3 2 Translation initiation factor IF-3, N-terminal domain GDPD_2 PF13653.6 gi|347523455|ref|YP_004781025.1| - 0.013 15.9 0.3 0.054 14.0 0.1 2.1 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family CRCB PF02537.15 gi|347523456|ref|YP_004781026.1| - 4.6e-24 84.5 12.0 6.1e-24 84.1 12.0 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) UCR_UQCRX_QCR9 PF05365.12 gi|347523456|ref|YP_004781026.1| - 5.7 7.0 7.4 1.2 9.1 2.5 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF190 PF02641.15 gi|347523457|ref|YP_004781027.1| - 8.9e-39 131.7 0.7 1e-38 131.6 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 Fer4 PF00037.27 gi|347523458|ref|YP_004781028.1| - 1.4e-08 34.2 17.7 2.1e-08 33.6 1.2 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347523458|ref|YP_004781028.1| - 1.3e-07 32.1 11.1 7.7e-06 26.4 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347523458|ref|YP_004781028.1| - 1.3e-07 31.6 23.0 4.2e-05 23.6 12.1 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523458|ref|YP_004781028.1| - 7.7e-07 30.0 9.5 8.9e-05 23.3 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|347523458|ref|YP_004781028.1| - 9.1e-07 28.7 17.1 3.6e-06 26.8 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347523458|ref|YP_004781028.1| - 1.3e-06 28.5 10.9 7.5e-05 22.8 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523458|ref|YP_004781028.1| - 1.6e-06 28.1 13.3 3.3e-06 27.1 11.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|347523458|ref|YP_004781028.1| - 0.00014 21.7 2.3 0.00014 21.7 2.3 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|347523458|ref|YP_004781028.1| - 0.00033 20.9 1.6 0.00033 20.9 1.6 3.0 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|347523458|ref|YP_004781028.1| - 0.0017 19.2 5.7 0.0017 19.2 5.7 3.1 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|347523458|ref|YP_004781028.1| - 0.022 15.3 0.8 0.022 15.3 0.8 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|347523458|ref|YP_004781028.1| - 0.024 15.2 2.0 0.024 15.2 2.0 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|347523458|ref|YP_004781028.1| - 0.051 14.4 2.2 0.051 14.4 2.2 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347523458|ref|YP_004781028.1| - 0.076 13.5 3.2 0.076 13.5 3.2 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|347523458|ref|YP_004781028.1| - 0.16 12.2 13.5 0.25 11.5 13.4 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|347523458|ref|YP_004781028.1| - 0.71 10.6 13.3 6.5 7.6 13.3 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain Ribosomal_L15e PF00827.17 gi|347523459|ref|YP_004781029.1| - 5.3e-81 270.9 3.7 5.3e-81 270.9 3.7 1.4 1 1 1 2 2 2 1 Ribosomal L15 DSPc PF00782.20 gi|347523460|ref|YP_004781030.1| - 1.1e-05 25.2 0.0 1.4e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|347523460|ref|YP_004781030.1| - 0.0015 18.1 0.1 0.002 17.7 0.1 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Myotub-related PF06602.14 gi|347523460|ref|YP_004781030.1| - 0.22 10.4 0.0 0.29 10.0 0.0 1.1 1 0 0 1 1 1 0 Myotubularin-like phosphatase domain DUF1297 PF06973.12 gi|347523462|ref|YP_004781032.1| - 8e-73 244.0 0.0 1.1e-72 243.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|347523462|ref|YP_004781032.1| - 3.1e-45 153.1 0.0 4.9e-45 152.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) TrmB PF01978.19 gi|347523462|ref|YP_004781032.1| - 0.028 14.3 0.3 1.4 8.8 0.1 2.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB ATP-grasp_4 PF13535.6 gi|347523462|ref|YP_004781032.1| - 0.1 12.2 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 ATP-grasp domain UPF0004 PF00919.20 gi|347523463|ref|YP_004781033.1| - 1.3e-26 92.5 0.1 6e-26 90.4 0.1 2.0 2 0 0 2 2 2 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|347523463|ref|YP_004781033.1| - 3.7e-25 89.2 0.1 8.5e-25 88.1 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 gi|347523463|ref|YP_004781033.1| - 0.00012 22.0 0.0 0.00069 19.6 0.0 2.2 2 0 0 2 2 2 1 TRAM domain Memo PF01875.17 gi|347523464|ref|YP_004781034.1| - 5.2e-88 294.7 0.0 5.9e-88 294.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|347523464|ref|YP_004781034.1| - 3.3e-07 29.7 0.1 6.1e-07 28.8 0.1 1.3 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase AA_kinase PF00696.28 gi|347523466|ref|YP_004781036.1| - 3.6e-23 82.4 0.0 4.1e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|347523467|ref|YP_004781037.1| - 1.8e-23 83.1 6.1 1.5e-21 76.9 6.1 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|347523467|ref|YP_004781037.1| - 0.00039 19.7 1.4 0.0091 15.2 1.2 2.3 2 1 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|347523467|ref|YP_004781037.1| - 0.028 13.4 5.8 0.32 9.9 0.1 3.2 3 1 0 4 4 4 0 IMP dehydrogenase / GMP reductase domain polyprenyl_synt PF00348.17 gi|347523468|ref|YP_004781038.1| - 7.3e-70 234.9 0.0 9.2e-70 234.6 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase MtrA PF04208.14 gi|347523468|ref|YP_004781038.1| - 0.071 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit A DUF2118 PF09891.9 gi|347523469|ref|YP_004781039.1| - 2.2e-39 134.8 0.5 2.6e-39 134.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Biotin_lipoyl_2 PF13533.6 gi|347523469|ref|YP_004781039.1| - 0.0033 17.2 1.2 0.011 15.5 0.5 2.0 1 1 1 2 2 2 1 Biotin-lipoyl like Biotin_lipoyl PF00364.22 gi|347523469|ref|YP_004781039.1| - 0.0048 16.7 1.7 0.0086 15.9 0.1 2.1 3 0 0 3 3 3 1 Biotin-requiring enzyme tRNA-synt_1c PF00749.21 gi|347523470|ref|YP_004781040.1| - 7.8e-78 261.5 0.0 1e-77 261.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|347523470|ref|YP_004781040.1| - 5.5e-28 98.0 0.0 1.4e-27 96.7 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain SH3_3 PF08239.11 gi|347523470|ref|YP_004781040.1| - 0.14 12.5 0.1 28 5.1 0.0 2.7 2 0 0 2 2 2 0 Bacterial SH3 domain Ribosomal_L12 PF00542.19 gi|347523470|ref|YP_004781040.1| - 0.19 12.1 0.6 0.48 10.8 0.6 1.6 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain Zip PF02535.22 gi|347523471|ref|YP_004781041.1| - 1.5e-18 67.1 24.2 3.7e-15 56.0 12.0 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter DUF2919 PF11143.8 gi|347523471|ref|YP_004781041.1| - 3.2 8.1 6.0 0.96 9.8 0.3 2.8 2 2 2 4 4 4 0 Protein of unknown function (DUF2919) Ribosomal_L7Ae PF01248.26 gi|347523472|ref|YP_004781042.1| - 9.6e-32 108.6 1.0 9.6e-32 108.6 1.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|347523472|ref|YP_004781042.1| - 1e-05 25.3 0.1 1.7e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|347523472|ref|YP_004781042.1| - 0.0024 18.0 0.0 0.0027 17.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 UbiA PF01040.18 gi|347523473|ref|YP_004781043.1| - 1.5e-36 126.0 24.5 2.1e-36 125.5 24.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Myc_target_1 PF15179.6 gi|347523473|ref|YP_004781043.1| - 0.3 11.0 0.6 0.49 10.3 0.6 1.3 1 0 0 1 1 1 0 Myc target protein 1 ABC_tran PF00005.27 gi|347523475|ref|YP_004781045.1| - 3.2e-24 86.0 0.0 4.1e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523475|ref|YP_004781045.1| - 2.9e-13 50.3 1.4 5.8e-07 29.6 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523475|ref|YP_004781045.1| - 3.2e-06 26.8 0.2 6.3e-05 22.5 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|347523475|ref|YP_004781045.1| - 0.00056 19.7 0.0 0.81 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|347523475|ref|YP_004781045.1| - 0.0049 16.5 0.1 0.091 12.4 0.0 2.3 1 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|347523475|ref|YP_004781045.1| - 0.0061 17.1 0.0 0.01 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523475|ref|YP_004781045.1| - 0.013 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|347523475|ref|YP_004781045.1| - 0.014 15.1 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|347523475|ref|YP_004781045.1| - 0.021 13.9 0.3 0.62 9.1 0.0 2.1 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|347523475|ref|YP_004781045.1| - 0.039 14.2 0.2 0.13 12.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|347523475|ref|YP_004781045.1| - 0.062 12.9 0.3 0.14 11.8 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|347523475|ref|YP_004781045.1| - 0.069 12.7 0.1 0.093 12.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|347523475|ref|YP_004781045.1| - 0.086 13.2 0.7 0.22 11.9 0.7 1.7 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.22 gi|347523475|ref|YP_004781045.1| - 0.087 12.0 0.1 0.19 10.9 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain DUF460 PF04312.13 gi|347523475|ref|YP_004781045.1| - 0.098 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) SbcCD_C PF13558.6 gi|347523475|ref|YP_004781045.1| - 0.11 12.7 0.1 2.3 8.5 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|347523475|ref|YP_004781045.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|347523475|ref|YP_004781045.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|347523475|ref|YP_004781045.1| - 0.16 12.0 0.0 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|347523475|ref|YP_004781045.1| - 0.17 12.0 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|347523475|ref|YP_004781045.1| - 0.23 8.9 0.1 0.29 8.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NACHT PF05729.12 gi|347523475|ref|YP_004781045.1| - 0.31 10.9 1.3 1.6 8.6 0.3 2.1 2 0 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.22 gi|347523476|ref|YP_004781046.1| - 9.2e-08 32.0 14.1 1.1e-07 31.8 13.7 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABA_GPCR PF12430.8 gi|347523476|ref|YP_004781046.1| - 4.4 7.0 10.2 0.11 12.3 2.2 1.9 2 0 0 2 2 2 0 Abscisic acid G-protein coupled receptor PBP_like_2 PF12849.7 gi|347523477|ref|YP_004781047.1| - 1.1e-20 74.5 0.0 1.4e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|347523477|ref|YP_004781047.1| - 5.4e-10 39.4 0.0 1.6e-09 37.8 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|347523477|ref|YP_004781047.1| - 4.7e-08 32.4 0.0 7.9e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|347523477|ref|YP_004781047.1| - 7.9e-07 29.3 0.0 5.5e-06 26.5 0.0 2.2 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|347523477|ref|YP_004781047.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain SBP_bac_8 PF13416.6 gi|347523477|ref|YP_004781047.1| - 0.13 12.1 0.0 8.2 6.1 0.0 2.2 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein NDK PF00334.19 gi|347523478|ref|YP_004781048.1| - 1.6e-56 190.1 0.0 1.8e-56 189.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|347523479|ref|YP_004781049.1| - 1.3e-23 83.0 1.5 1.4e-23 82.8 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|347523479|ref|YP_004781049.1| - 2.2e-06 27.5 0.6 2.2e-06 27.5 0.6 1.5 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|347523479|ref|YP_004781049.1| - 0.063 13.4 0.0 0.091 12.9 0.0 1.5 1 1 0 1 1 1 0 YHS domain DUF2116 PF09889.9 gi|347523479|ref|YP_004781049.1| - 0.29 11.2 1.6 7.3 6.6 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) VATC PF18716.1 gi|347523479|ref|YP_004781049.1| - 0.39 10.6 4.7 2.1 8.2 4.7 1.9 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|347523480|ref|YP_004781050.1| - 1.3e-30 105.2 3.4 1.7e-30 104.8 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e TGS PF02824.21 gi|347523481|ref|YP_004781051.1| - 3.6e-21 75.0 0.0 6.4e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|347523481|ref|YP_004781051.1| - 3.8e-16 59.0 0.0 1.3e-15 57.3 0.0 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|347523481|ref|YP_004781051.1| - 4.6e-15 55.7 0.0 1.7e-14 53.8 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|347523481|ref|YP_004781051.1| - 4.9e-08 32.6 0.0 8.9e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|347523481|ref|YP_004781051.1| - 7.5e-05 22.8 0.1 0.007 16.5 0.0 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|347523481|ref|YP_004781051.1| - 0.0005 19.7 0.0 0.065 12.8 0.0 2.9 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|347523481|ref|YP_004781051.1| - 0.0074 15.8 0.0 2.1 7.8 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family Mg_chelatase PF01078.21 gi|347523481|ref|YP_004781051.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRPRB PF09439.10 gi|347523481|ref|YP_004781051.1| - 0.15 11.5 0.0 0.74 9.2 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit VQ PF05678.14 gi|347523481|ref|YP_004781051.1| - 0.15 11.5 0.1 0.26 10.8 0.1 1.4 1 0 0 1 1 1 0 VQ motif AIM24 PF01987.17 gi|347523482|ref|YP_004781052.1| - 1.1e-53 182.0 0.0 1.2e-53 181.9 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 TrmB PF01978.19 gi|347523483|ref|YP_004781053.1| - 3.5e-10 39.6 0.0 7.1e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|347523483|ref|YP_004781053.1| - 7.5e-08 32.2 1.1 1.3e-07 31.4 0.3 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|347523483|ref|YP_004781053.1| - 2.2e-05 24.3 0.1 5.4e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|347523483|ref|YP_004781053.1| - 3.2e-05 23.8 0.0 5.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|347523483|ref|YP_004781053.1| - 0.00043 20.6 0.0 0.0014 18.9 0.0 1.9 1 1 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|347523483|ref|YP_004781053.1| - 0.0013 18.8 0.1 0.0027 17.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|347523483|ref|YP_004781053.1| - 0.0016 18.0 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|347523483|ref|YP_004781053.1| - 0.0023 17.4 0.7 0.0033 17.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_CodY PF08222.11 gi|347523483|ref|YP_004781053.1| - 0.0036 16.8 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|347523483|ref|YP_004781053.1| - 0.0053 16.6 0.3 0.069 13.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|347523483|ref|YP_004781053.1| - 0.0076 16.3 0.1 0.016 15.3 0.1 1.6 2 0 0 2 2 2 1 Replication-relaxation HTH_15 PF12324.8 gi|347523483|ref|YP_004781053.1| - 0.011 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase TFIIE_alpha PF02002.17 gi|347523483|ref|YP_004781053.1| - 0.058 13.3 0.0 0.1 12.4 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|347523483|ref|YP_004781053.1| - 0.066 13.2 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|347523483|ref|YP_004781053.1| - 0.067 12.8 0.0 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB DUF2250 PF10007.9 gi|347523483|ref|YP_004781053.1| - 0.073 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HrcA_DNA-bdg PF03444.15 gi|347523483|ref|YP_004781053.1| - 0.073 12.7 0.0 0.14 11.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_27 PF13463.6 gi|347523483|ref|YP_004781053.1| - 0.11 13.0 0.1 0.34 11.5 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain VWA PF00092.28 gi|347523484|ref|YP_004781054.1| - 1e-13 51.9 0.0 1.8e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|347523484|ref|YP_004781054.1| - 3.4e-13 49.8 0.0 1.9e-12 47.4 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|347523484|ref|YP_004781054.1| - 6.2e-12 46.1 0.1 9.8e-11 42.3 0.0 2.5 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|347523484|ref|YP_004781054.1| - 0.0002 20.8 0.0 0.00049 19.6 0.0 1.7 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein AP_endonuc_2 PF01261.24 gi|347523484|ref|YP_004781054.1| - 0.029 13.8 0.9 0.043 13.2 0.0 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel TetR_C_21 PF17926.1 gi|347523484|ref|YP_004781054.1| - 0.042 14.0 1.2 0.077 13.1 1.2 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Glyco_tran_WecB PF03808.13 gi|347523484|ref|YP_004781054.1| - 0.068 13.1 0.2 0.23 11.4 0.0 2.0 3 0 0 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family DUF834 PF05754.14 gi|347523484|ref|YP_004781054.1| - 0.16 12.0 0.7 0.5 10.4 0.7 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF834) ArnB_C PF18677.1 gi|347523484|ref|YP_004781054.1| - 1 9.5 6.1 2.9 8.1 4.5 2.5 1 1 1 2 2 2 0 Archaellum regulatory network B, C-terminal domain FHA PF00498.26 gi|347523485|ref|YP_004781055.1| - 1.5e-23 82.9 0.0 1.9e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|347523485|ref|YP_004781055.1| - 5.1e-18 65.2 0.0 6.3e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain FHA_2 PF17913.1 gi|347523485|ref|YP_004781055.1| - 0.042 14.1 0.0 0.084 13.1 0.0 1.5 1 1 0 1 1 1 0 FHA domain Pkinase PF00069.25 gi|347523486|ref|YP_004781056.1| - 3.2e-22 79.2 0.0 6.3e-20 71.6 0.0 2.3 2 0 0 2 2 2 2 Protein kinase domain DUF2226 PF09987.9 gi|347523486|ref|YP_004781056.1| - 0.022 14.1 0.4 0.041 13.2 0.4 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) APH PF01636.23 gi|347523486|ref|YP_004781056.1| - 0.029 14.3 0.1 0.076 12.9 0.1 1.9 1 1 0 1 1 1 0 Phosphotransferase enzyme family 5-FTHF_cyc-lig PF01812.20 gi|347523487|ref|YP_004781057.1| - 2.7e-35 121.9 0.0 3.2e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Mrr_cat PF04471.12 gi|347523488|ref|YP_004781058.1| - 0.00016 21.7 0.2 0.00031 20.7 0.2 1.5 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|347523488|ref|YP_004781058.1| - 0.0073 16.5 0.3 0.015 15.5 0.3 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 HTH_3 PF01381.22 gi|347523488|ref|YP_004781058.1| - 0.066 13.3 0.3 16 5.6 0.0 3.4 3 0 0 3 3 3 0 Helix-turn-helix DNA_photolyase PF00875.18 gi|347523488|ref|YP_004781058.1| - 0.072 13.1 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 DNA photolyase PCP_red PF08369.10 gi|347523488|ref|YP_004781058.1| - 0.083 13.1 5.2 1.5 9.1 0.0 3.5 4 0 0 4 4 4 0 Proto-chlorophyllide reductase 57 kD subunit PreAtp-grasp PF18604.1 gi|347523488|ref|YP_004781058.1| - 0.13 11.9 1.0 11 5.6 0.1 2.4 1 1 1 2 2 2 0 Pre ATP-grasp domain HTH_Crp_2 PF13545.6 gi|347523488|ref|YP_004781058.1| - 0.7 9.9 4.9 0.66 10.0 1.3 2.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain IF2_N PF04760.15 gi|347523488|ref|YP_004781058.1| - 1.3 8.9 4.0 51 3.8 0.0 3.3 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Lactamase_B_3 PF13483.6 gi|347523489|ref|YP_004781059.1| - 7e-24 84.6 0.3 2.4e-23 82.8 0.3 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|347523489|ref|YP_004781059.1| - 7.1e-20 71.4 0.0 1.2e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347523489|ref|YP_004781059.1| - 1.9e-11 44.3 0.9 2.4e-11 44.0 0.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|347523489|ref|YP_004781059.1| - 0.07 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Peptidase_M24 PF00557.24 gi|347523490|ref|YP_004781060.1| - 6.2e-43 146.9 0.0 7.5e-43 146.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.12 gi|347523491|ref|YP_004781061.1| - 8.5e-135 449.3 3.5 9.8e-135 449.1 3.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) HypA PF01155.19 gi|347523492|ref|YP_004781062.1| - 0.0071 16.3 0.0 0.0098 15.9 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|347523492|ref|YP_004781062.1| - 0.008 16.5 0.2 5.2 7.5 0.0 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.19 gi|347523492|ref|YP_004781062.1| - 0.027 14.3 2.8 0.047 13.5 0.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|347523492|ref|YP_004781062.1| - 0.04 13.8 0.6 10 6.1 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|347523492|ref|YP_004781062.1| - 0.057 13.5 1.1 0.15 12.2 1.1 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF3754 PF12576.8 gi|347523492|ref|YP_004781062.1| - 0.061 13.3 0.2 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) PknG_rubred PF16919.5 gi|347523492|ref|YP_004781062.1| - 0.064 13.4 2.2 0.086 13.0 1.7 1.4 1 1 0 1 1 1 0 Protein kinase G rubredoxin domain DZR PF12773.7 gi|347523492|ref|YP_004781062.1| - 0.073 13.1 0.3 0.18 11.9 0.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|347523492|ref|YP_004781062.1| - 0.081 12.5 1.1 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|347523492|ref|YP_004781062.1| - 0.14 12.1 1.4 0.37 10.7 1.4 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF4258 PF14076.6 gi|347523493|ref|YP_004781063.1| - 2.7e-05 24.4 0.6 3.9e-05 23.9 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4258) EABR PF12180.8 gi|347523493|ref|YP_004781063.1| - 0.035 13.7 0.1 0.063 12.9 0.1 1.4 1 0 0 1 1 1 0 TSG101 and ALIX binding domain of CEP55 BrnT_toxin PF04365.13 gi|347523493|ref|YP_004781063.1| - 0.039 14.3 0.1 0.048 14.0 0.1 1.3 1 1 0 1 1 1 0 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system BPD_transp_1 PF00528.22 gi|347523495|ref|YP_004781065.1| - 4.1e-34 117.9 18.4 4.1e-34 117.9 18.4 2.2 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|347523496|ref|YP_004781066.1| - 1.7e-25 89.8 16.5 1.7e-25 89.8 16.5 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component CBM_48 PF02922.18 gi|347523496|ref|YP_004781066.1| - 0.066 13.6 0.0 0.28 11.6 0.0 2.0 1 1 1 2 2 2 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SBP_bac_5 PF00496.22 gi|347523497|ref|YP_004781067.1| - 2.6e-24 85.9 5.8 2.6e-17 62.9 0.1 2.9 3 0 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle HA PF03457.14 gi|347523497|ref|YP_004781067.1| - 0.18 12.1 0.0 0.77 10.1 0.0 2.0 2 0 0 2 2 2 0 Helicase associated domain tRNA_SAD PF07973.14 gi|347523498|ref|YP_004781068.1| - 4.1e-09 36.4 0.3 7.7e-09 35.5 0.3 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|347523498|ref|YP_004781068.1| - 4.2e-09 35.5 0.0 5.8e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) PNP_UDP_1 PF01048.20 gi|347523499|ref|YP_004781069.1| - 4e-41 140.8 2.7 4.6e-41 140.6 2.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Cep57_CLD_2 PF14197.6 gi|347523500|ref|YP_004781070.1| - 0.066 13.3 0.4 0.11 12.6 0.4 1.3 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Flavin_Reduct PF01613.18 gi|347523501|ref|YP_004781071.1| - 1.3e-20 74.0 0.0 1.5e-20 73.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF4265 PF14085.6 gi|347523502|ref|YP_004781072.1| - 0.0009 19.2 0.4 0.0018 18.2 0.3 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4265) FlgD_ig PF13860.6 gi|347523502|ref|YP_004781072.1| - 0.0054 16.6 0.2 0.019 14.8 0.2 1.8 1 1 1 2 2 2 1 FlgD Ig-like domain SNAP-25 PF00835.19 gi|347523502|ref|YP_004781072.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 SNAP-25 family Ribonuc_2-5A PF06479.12 gi|347523502|ref|YP_004781072.1| - 0.17 12.1 0.1 0.3 11.3 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease 2-5A Metallophos PF00149.28 gi|347523504|ref|YP_004781074.1| - 2.4e-27 96.8 0.1 3.2e-27 96.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|347523504|ref|YP_004781074.1| - 6.9e-05 23.1 0.0 9.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain THUMP PF02926.17 gi|347523505|ref|YP_004781075.1| - 3.2e-18 66.2 0.1 5.6e-18 65.4 0.1 1.4 1 0 0 1 1 1 1 THUMP domain Sigma70_r4_2 PF08281.12 gi|347523506|ref|YP_004781076.1| - 0.0019 17.8 0.3 0.0079 15.9 0.0 2.0 2 1 1 3 3 3 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|347523506|ref|YP_004781076.1| - 0.0032 17.2 0.0 0.0097 15.7 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Cro PF09048.10 gi|347523506|ref|YP_004781076.1| - 0.038 14.0 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 Cro DUF1933 PF09147.10 gi|347523506|ref|YP_004781076.1| - 0.13 11.9 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1933) Thioredoxin_3 PF13192.6 gi|347523507|ref|YP_004781077.1| - 3.4e-31 107.1 0.3 6.5e-16 58.1 0.0 2.3 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|347523507|ref|YP_004781077.1| - 1.6e-07 31.4 1.7 0.00042 20.5 0.3 3.3 3 1 0 3 3 3 2 Glutaredoxin Thioredoxin PF00085.20 gi|347523507|ref|YP_004781077.1| - 6.4e-05 22.9 0.0 0.01 15.8 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|347523507|ref|YP_004781077.1| - 0.0021 18.5 4.0 1.3 9.5 0.1 3.5 2 2 0 2 2 2 2 Thioredoxin-like domain TraF PF13728.6 gi|347523507|ref|YP_004781077.1| - 0.0038 17.1 0.0 2 8.2 0.0 2.7 2 1 0 2 2 2 2 F plasmid transfer operon protein TrbC_Ftype PF09673.10 gi|347523507|ref|YP_004781077.1| - 0.0059 16.6 0.0 5.2 7.1 0.0 2.6 2 1 0 2 2 2 2 Type-F conjugative transfer system pilin assembly protein Thioredoxin_4 PF13462.6 gi|347523507|ref|YP_004781077.1| - 0.0071 16.5 4.4 9.8 6.3 0.0 4.0 2 2 2 4 4 4 1 Thioredoxin DUF356 PF04009.12 gi|347523507|ref|YP_004781077.1| - 0.039 14.2 0.0 2.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF356) Thioredoxin_9 PF14595.6 gi|347523507|ref|YP_004781077.1| - 0.16 11.8 0.0 4.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin PDDEXK_1 PF12705.7 gi|347523507|ref|YP_004781077.1| - 0.19 11.6 0.0 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily GatB_N PF02934.15 gi|347523508|ref|YP_004781078.1| - 9.5e-73 244.9 0.0 1.7e-72 244.1 0.0 1.4 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|347523508|ref|YP_004781078.1| - 3.6e-27 95.1 0.1 3.6e-27 95.1 0.1 2.1 3 0 0 3 3 3 1 GatB domain GAD PF02938.14 gi|347523508|ref|YP_004781078.1| - 2.7e-23 82.0 0.0 1.1e-22 80.1 0.0 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|347523508|ref|YP_004781078.1| - 6e-07 29.6 0.6 1.5e-06 28.3 0.6 1.7 1 0 0 1 1 1 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.15 gi|347523508|ref|YP_004781078.1| - 0.00029 20.9 0.1 0.0015 18.6 0.1 2.0 2 0 0 2 2 2 1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Toprim_3 PF13362.6 gi|347523508|ref|YP_004781078.1| - 0.047 14.0 0.1 0.52 10.7 0.1 2.3 2 0 0 2 2 2 0 Toprim domain Asparaginase PF00710.20 gi|347523509|ref|YP_004781079.1| - 5.3e-62 208.8 0.3 1.3e-61 207.5 0.0 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|347523509|ref|YP_004781079.1| - 3.7e-37 127.0 0.1 1.1e-35 122.3 0.0 2.4 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|347523509|ref|YP_004781079.1| - 1.6e-22 78.5 1.0 1.5e-21 75.5 0.3 2.5 2 0 0 2 2 2 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|347523509|ref|YP_004781079.1| - 0.035 13.7 0.0 2.1 7.9 0.0 2.4 2 0 0 2 2 2 0 Periplasmic binding protein domain Ribosomal_S30 PF04758.14 gi|347523510|ref|YP_004781080.1| - 6.4e-12 45.5 2.7 7.2e-12 45.3 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Alba PF01918.21 gi|347523511|ref|YP_004781081.1| - 9.7e-23 79.8 1.1 1.5e-22 79.2 1.1 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|347523511|ref|YP_004781081.1| - 0.031 14.2 0.6 0.041 13.8 0.3 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P YjeF_N PF03853.15 gi|347523512|ref|YP_004781082.1| - 3e-44 150.9 0.1 4.8e-44 150.3 0.1 1.3 1 0 0 1 1 1 1 YjeF-related protein N-terminus Carb_kinase PF01256.17 gi|347523512|ref|YP_004781082.1| - 7.8e-44 150.0 0.0 1.2e-43 149.4 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|347523512|ref|YP_004781082.1| - 6.9e-07 28.9 0.0 1.1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|347523512|ref|YP_004781082.1| - 2.5e-06 27.1 0.0 3.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Methyltransf_30 PF05430.11 gi|347523513|ref|YP_004781083.1| - 1.1e-08 35.0 0.0 1.7e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.12 gi|347523513|ref|YP_004781083.1| - 0.00038 21.1 0.0 0.0042 17.7 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347523513|ref|YP_004781083.1| - 0.00092 19.9 0.0 0.0044 17.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|347523513|ref|YP_004781083.1| - 0.0022 17.9 0.0 0.0068 16.3 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347523513|ref|YP_004781083.1| - 0.19 12.5 0.0 2.4 8.9 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain Topoisom_bac PF01131.20 gi|347523514|ref|YP_004781084.1| - 6.2e-79 265.9 0.0 1.2e-78 264.9 0.0 1.5 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|347523514|ref|YP_004781084.1| - 2.2e-23 82.5 0.0 5.7e-23 81.1 0.0 1.8 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|347523514|ref|YP_004781084.1| - 6.4e-15 55.4 0.0 1.8e-14 53.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|347523514|ref|YP_004781084.1| - 2.2e-12 46.2 4.3 1.1e-11 43.9 1.5 2.5 2 0 0 2 2 2 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|347523514|ref|YP_004781084.1| - 7.3e-07 29.3 0.0 1.8e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|347523514|ref|YP_004781084.1| - 2e-06 27.6 0.0 4.6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Helicase_C PF00271.31 gi|347523514|ref|YP_004781084.1| - 2.1e-06 28.1 0.0 0.0095 16.3 0.0 3.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_19 PF13245.6 gi|347523514|ref|YP_004781084.1| - 0.0003 21.2 0.0 0.00077 19.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain TackOD1 PF18551.1 gi|347523514|ref|YP_004781084.1| - 0.00034 20.4 1.6 0.001 18.8 0.3 2.2 2 0 0 2 2 2 1 Thaumarchaeal output domain 1 AAA_22 PF13401.6 gi|347523514|ref|YP_004781084.1| - 0.0012 19.1 0.1 0.011 16.0 0.1 2.7 1 1 0 1 1 1 1 AAA domain Toprim_4 PF13662.6 gi|347523514|ref|YP_004781084.1| - 0.009 16.5 0.0 0.03 14.8 0.0 1.9 1 0 0 1 1 1 1 Toprim domain SecA_DEAD PF07517.14 gi|347523514|ref|YP_004781084.1| - 0.012 14.9 0.0 0.034 13.5 0.0 1.6 1 1 0 1 1 1 0 SecA DEAD-like domain T2SSE PF00437.20 gi|347523514|ref|YP_004781084.1| - 0.033 13.2 0.0 0.068 12.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|347523514|ref|YP_004781084.1| - 0.035 14.5 1.0 2.4 8.5 0.0 3.3 3 0 0 3 3 3 0 AAA ATPase domain HypA PF01155.19 gi|347523514|ref|YP_004781084.1| - 0.056 13.5 0.2 0.056 13.5 0.2 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_25 PF13481.6 gi|347523514|ref|YP_004781084.1| - 0.063 12.8 1.3 0.2 11.2 0.4 2.3 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|347523514|ref|YP_004781084.1| - 0.079 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_11 PF13086.6 gi|347523514|ref|YP_004781084.1| - 0.13 12.0 0.0 1.1 9.0 0.0 2.2 1 1 1 2 2 2 0 AAA domain RE_MamI PF09567.10 gi|347523514|ref|YP_004781084.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 MamI restriction endonuclease PhoH PF02562.16 gi|347523514|ref|YP_004781084.1| - 0.15 11.5 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_23 PF13476.6 gi|347523514|ref|YP_004781084.1| - 0.22 12.0 0.0 0.53 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|347523514|ref|YP_004781084.1| - 2.8 8.0 4.6 2 8.5 0.6 2.2 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|347523514|ref|YP_004781084.1| - 4.2 7.6 7.4 0.67 10.1 0.9 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|347523514|ref|YP_004781084.1| - 4.3 7.3 5.1 6.1 6.8 0.8 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|347523514|ref|YP_004781084.1| - 8.4 6.0 7.7 9 5.9 0.3 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding Alba PF01918.21 gi|347523515|ref|YP_004781085.1| - 9.8e-13 47.7 0.6 1.3e-12 47.4 0.6 1.2 1 0 0 1 1 1 1 Alba DNAPolymera_Pol PF11590.8 gi|347523516|ref|YP_004781086.1| - 0.056 13.3 0.2 0.1 12.5 0.2 1.5 1 0 0 1 1 1 0 DNA polymerase catalytic subunit Pol DEAD PF00270.29 gi|347523517|ref|YP_004781087.1| - 4.1e-32 111.4 0.0 9.2e-32 110.2 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|347523517|ref|YP_004781087.1| - 1.5e-17 63.9 0.0 1.4e-14 54.3 0.0 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|347523517|ref|YP_004781087.1| - 1.5e-09 37.9 0.0 0.002 18.0 0.0 2.7 1 1 1 2 2 2 2 DEAD/H associated ResIII PF04851.15 gi|347523517|ref|YP_004781087.1| - 3.1e-07 30.5 0.0 6.7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|347523517|ref|YP_004781087.1| - 0.00088 19.6 0.0 0.0096 16.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain HEM4 PF02602.15 gi|347523517|ref|YP_004781087.1| - 0.06 12.7 0.1 0.14 11.5 0.1 1.6 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD HTH_Crp_2 PF13545.6 gi|347523517|ref|YP_004781087.1| - 0.085 12.8 0.1 2 8.4 0.0 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AAA_11 PF13086.6 gi|347523517|ref|YP_004781087.1| - 0.15 11.8 0.0 0.8 9.4 0.0 2.2 1 1 1 2 2 2 0 AAA domain zf-FCS PF06467.14 gi|347523518|ref|YP_004781088.1| - 0.042 13.8 0.1 0.059 13.3 0.1 1.3 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif AlkA_N PF06029.11 gi|347523519|ref|YP_004781089.1| - 0.12 12.7 0.1 0.14 12.5 0.1 1.0 1 0 0 1 1 1 0 AlkA N-terminal domain DUF3539 PF12058.8 gi|347523519|ref|YP_004781089.1| - 0.14 12.3 0.1 0.17 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3539) GntR PF00392.21 gi|347523520|ref|YP_004781090.1| - 0.026 14.2 0.1 0.055 13.1 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family YjcQ PF09639.10 gi|347523520|ref|YP_004781090.1| - 0.1 12.8 0.0 0.12 12.6 0.0 1.3 1 1 0 1 1 1 0 YjcQ protein TrmB PF01978.19 gi|347523520|ref|YP_004781090.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HIT PF01230.23 gi|347523521|ref|YP_004781091.1| - 6.3e-13 49.3 0.1 1.1e-12 48.5 0.1 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|347523521|ref|YP_004781091.1| - 6.9e-07 29.7 0.0 1e-06 29.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|347523521|ref|YP_004781091.1| - 9.7e-06 25.5 0.5 1.6e-05 24.8 0.0 1.5 2 0 0 2 2 2 1 Protein similar to CwfJ C-terminus 1 FMN_bind_2 PF04299.12 gi|347523521|ref|YP_004781091.1| - 0.14 11.8 0.0 0.37 10.5 0.0 1.7 2 0 0 2 2 2 0 Putative FMN-binding domain Arc_PepC_II PF06847.11 gi|347523522|ref|YP_004781092.1| - 1.1e-08 35.4 0.0 4.9e-08 33.4 0.0 2.0 1 1 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|347523522|ref|YP_004781092.1| - 0.0047 17.3 10.6 0.0095 16.3 10.6 1.5 1 0 0 1 1 1 1 Type IV leader peptidase family Rad51 PF08423.11 gi|347523524|ref|YP_004781094.1| - 4.2e-94 314.6 0.0 5e-94 314.3 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|347523524|ref|YP_004781094.1| - 5.6e-14 52.2 0.0 8.2e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|347523524|ref|YP_004781094.1| - 3.1e-13 50.1 1.0 5.7e-13 49.3 0.1 2.0 2 0 0 2 2 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|347523524|ref|YP_004781094.1| - 1.8e-11 43.9 0.0 2.8e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|347523524|ref|YP_004781094.1| - 3.7e-06 26.7 0.0 6.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|347523524|ref|YP_004781094.1| - 1.9e-05 24.8 0.0 3.8e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|347523524|ref|YP_004781094.1| - 3.5e-05 23.5 0.0 0.00011 21.9 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|347523524|ref|YP_004781094.1| - 7e-05 22.9 0.1 0.00028 20.9 0.0 2.1 2 0 0 2 2 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|347523524|ref|YP_004781094.1| - 0.0011 19.2 0.0 0.0028 17.9 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif HHH PF00633.23 gi|347523524|ref|YP_004781094.1| - 0.0011 18.7 0.8 0.0093 15.8 0.1 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|347523524|ref|YP_004781094.1| - 0.0041 17.3 0.4 0.02 15.2 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) AAA_22 PF13401.6 gi|347523524|ref|YP_004781094.1| - 0.016 15.5 0.0 0.053 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|347523524|ref|YP_004781094.1| - 0.025 15.0 0.0 0.08 13.4 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HHH_8 PF14716.6 gi|347523524|ref|YP_004781094.1| - 0.034 14.5 0.7 0.084 13.3 0.1 2.0 2 0 0 2 2 1 0 Helix-hairpin-helix domain Sigma70_r3 PF04539.16 gi|347523524|ref|YP_004781094.1| - 0.034 14.2 0.4 4.1 7.6 0.2 2.9 3 0 0 3 3 3 0 Sigma-70 region 3 AAA_18 PF13238.6 gi|347523524|ref|YP_004781094.1| - 0.071 13.7 0.0 0.18 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain HhH-GPD PF00730.25 gi|347523524|ref|YP_004781094.1| - 0.083 13.4 0.4 0.96 9.9 0.1 2.4 1 1 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein PAXNEB PF05625.11 gi|347523524|ref|YP_004781094.1| - 0.11 11.6 0.1 9.9 5.2 0.1 2.1 2 0 0 2 2 2 0 PAXNEB protein RHH_4 PF13467.6 gi|347523524|ref|YP_004781094.1| - 0.12 12.3 0.2 6.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix domain HTH_IclR PF09339.10 gi|347523524|ref|YP_004781094.1| - 0.14 12.0 1.4 0.22 11.4 0.2 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain AAA_24 PF13479.6 gi|347523524|ref|YP_004781094.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain BAF PF02961.14 gi|347523524|ref|YP_004781094.1| - 0.16 12.4 0.0 0.32 11.5 0.0 1.4 1 0 0 1 1 1 0 Barrier to autointegration factor 5_3_exonuc PF01367.20 gi|347523524|ref|YP_004781094.1| - 0.17 12.5 1.1 0.93 10.1 0.3 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold AMP-binding PF00501.28 gi|347523525|ref|YP_004781095.1| - 3.2e-94 315.9 0.0 4e-94 315.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|347523525|ref|YP_004781095.1| - 1.7e-32 112.2 2.0 4.3e-32 110.9 2.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|347523525|ref|YP_004781095.1| - 3.7e-22 78.0 0.3 9.7e-22 76.6 0.3 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus tRNA-Thr_ED PF08915.11 gi|347523526|ref|YP_004781096.1| - 2.9e-50 169.9 0.8 4.2e-50 169.4 0.0 1.7 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|347523526|ref|YP_004781096.1| - 3e-23 81.8 0.5 1.4e-22 79.6 0.3 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|347523526|ref|YP_004781096.1| - 2.6e-15 56.8 0.1 7.8e-15 55.3 0.1 1.8 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Sulfakinin PF08257.11 gi|347523526|ref|YP_004781096.1| - 1.8 8.9 6.0 0.22 11.6 0.9 2.4 2 0 0 2 2 2 0 Sulfakinin family SIS PF01380.22 gi|347523527|ref|YP_004781097.1| - 2.6e-52 176.1 1.9 8.5e-32 109.8 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|347523527|ref|YP_004781097.1| - 2e-19 70.1 0.0 3.9e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|347523527|ref|YP_004781097.1| - 7.5e-17 61.4 0.0 1.4e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|347523527|ref|YP_004781097.1| - 1.9e-08 34.4 4.1 2e-07 31.1 0.2 3.2 2 1 1 3 3 3 1 SIS domain GATase_4 PF13230.6 gi|347523527|ref|YP_004781097.1| - 0.0052 15.7 0.0 0.01 14.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.24 gi|347523528|ref|YP_004781098.1| - 1.8e-08 33.8 0.0 0.0018 17.9 0.1 4.9 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) PGM1_C PF18105.1 gi|347523528|ref|YP_004781098.1| - 0.00044 19.7 0.1 0.015 14.8 0.0 2.6 2 0 0 2 2 2 1 PGM1 C-terminal domain tRNA-synt_2c PF01411.19 gi|347523529|ref|YP_004781099.1| - 2.1e-113 379.7 0.0 3.1e-113 379.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|347523529|ref|YP_004781099.1| - 2.4e-15 56.3 0.1 5.3e-15 55.2 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|347523529|ref|YP_004781099.1| - 2.5e-08 34.4 2.8 2.9e-08 34.2 1.1 2.0 2 0 0 2 2 2 1 DHHA1 domain Rpn9_C PF18261.1 gi|347523529|ref|YP_004781099.1| - 0.14 11.8 0.0 0.6 9.8 0.0 2.1 1 0 0 1 1 1 0 Rpn9 C-terminal helix Phage_ABA_S PF18066.1 gi|347523529|ref|YP_004781099.1| - 0.17 12.6 0.2 10 6.9 0.0 3.1 3 0 0 3 3 3 0 Phage ABA sandwich domain CLZ PF16526.5 gi|347523529|ref|YP_004781099.1| - 1.5 9.2 5.1 0.48 10.8 0.2 2.6 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Ribosomal_L39 PF00832.20 gi|347523530|ref|YP_004781100.1| - 1.4e-20 72.6 12.0 1.7e-20 72.4 12.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein REV PF00424.18 gi|347523530|ref|YP_004781100.1| - 0.062 13.3 1.4 0.071 13.1 1.4 1.1 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) Ribosomal_L31e PF01198.19 gi|347523531|ref|YP_004781101.1| - 1.2e-11 44.7 0.5 2.3e-11 43.8 0.2 1.6 1 1 1 2 2 2 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|347523532|ref|YP_004781102.1| - 1.5e-66 223.6 1.7 1.9e-66 223.2 1.7 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|347523533|ref|YP_004781103.1| - 2.1e-13 50.4 0.1 3.7e-13 49.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|347523534|ref|YP_004781104.1| - 6.2e-15 55.2 0.4 8.4e-15 54.7 0.4 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|347523534|ref|YP_004781104.1| - 0.00027 20.8 0.4 0.077 13.0 0.0 2.3 2 0 0 2 2 2 2 Prefoldin subunit DUF5344 PF17279.2 gi|347523534|ref|YP_004781104.1| - 0.03 14.9 0.6 2.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5344) Syntaxin-6_N PF09177.11 gi|347523534|ref|YP_004781104.1| - 0.038 14.5 0.7 3.9 8.1 0.0 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Nsp1_C PF05064.13 gi|347523534|ref|YP_004781104.1| - 0.046 13.5 1.7 0.31 10.8 0.0 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF1192 PF06698.11 gi|347523534|ref|YP_004781104.1| - 0.061 13.4 0.7 0.061 13.4 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Baculo_PEP_C PF04513.12 gi|347523534|ref|YP_004781104.1| - 0.079 13.0 2.0 0.19 11.7 0.4 1.9 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|347523534|ref|YP_004781104.1| - 0.097 13.1 0.6 0.22 12.0 0.2 1.8 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein SKA2 PF16740.5 gi|347523534|ref|YP_004781104.1| - 0.53 10.1 4.3 1.6 8.5 0.2 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF4140 PF13600.6 gi|347523534|ref|YP_004781104.1| - 1.3 9.5 4.2 1.7 9.1 0.3 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) ABC_tran_CTD PF16326.5 gi|347523534|ref|YP_004781104.1| - 1.4 9.3 6.2 0.51 10.6 0.8 2.2 2 0 0 2 2 2 0 ABC transporter C-terminal domain TPR_MLP1_2 PF07926.12 gi|347523534|ref|YP_004781104.1| - 1.4 8.9 7.2 2.4 8.2 1.1 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein SRP54 PF00448.22 gi|347523535|ref|YP_004781105.1| - 2.9e-72 242.4 0.3 4.5e-72 241.8 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|347523535|ref|YP_004781105.1| - 3.9e-12 46.2 3.3 3.9e-12 46.2 3.3 1.9 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|347523535|ref|YP_004781105.1| - 1.2e-06 28.4 0.3 2.6e-06 27.3 0.3 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|347523535|ref|YP_004781105.1| - 4.7e-05 22.5 0.7 0.00016 20.8 0.6 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|347523535|ref|YP_004781105.1| - 7.7e-05 23.1 0.4 0.00038 20.9 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523535|ref|YP_004781105.1| - 0.0007 19.9 0.1 0.0074 16.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain cobW PF02492.19 gi|347523535|ref|YP_004781105.1| - 0.0024 17.5 0.9 0.0061 16.2 0.9 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|347523535|ref|YP_004781105.1| - 0.0052 16.9 1.7 0.057 13.5 0.6 2.8 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|347523535|ref|YP_004781105.1| - 0.0058 16.7 0.3 0.038 14.1 0.1 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_17 PF13207.6 gi|347523535|ref|YP_004781105.1| - 0.01 16.3 1.0 0.039 14.4 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|347523535|ref|YP_004781105.1| - 0.011 15.4 4.4 0.031 14.0 0.9 2.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|347523535|ref|YP_004781105.1| - 0.014 15.5 0.1 0.24 11.6 0.1 2.6 2 2 0 2 2 2 0 AAA domain AAA PF00004.29 gi|347523535|ref|YP_004781105.1| - 0.017 15.5 0.2 0.11 12.9 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|347523535|ref|YP_004781105.1| - 0.024 13.9 0.2 0.12 11.7 0.0 2.2 2 1 0 2 2 2 0 Zeta toxin PIN_8 PF18476.1 gi|347523535|ref|YP_004781105.1| - 0.03 14.2 0.2 0.044 13.6 0.2 1.2 1 0 0 1 1 1 0 PIN like domain AAA_19 PF13245.6 gi|347523535|ref|YP_004781105.1| - 0.059 13.7 0.2 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|347523535|ref|YP_004781105.1| - 0.11 11.8 0.9 0.22 10.9 0.1 1.9 2 1 0 2 2 2 0 KaiC AAA_28 PF13521.6 gi|347523535|ref|YP_004781105.1| - 0.19 12.0 1.0 0.37 11.0 0.1 2.0 2 1 1 3 3 3 0 AAA domain AAA_31 PF13614.6 gi|347523535|ref|YP_004781105.1| - 0.27 11.1 1.6 2 8.3 0.1 2.6 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|347523535|ref|YP_004781105.1| - 0.55 10.1 3.6 2.8 7.8 0.1 2.9 3 0 0 3 3 3 0 NTPase CAP18_C PF12153.8 gi|347523535|ref|YP_004781105.1| - 2.8 7.9 9.8 0.72 9.8 2.1 3.2 3 0 0 3 3 3 0 LPS binding domain of CAP18 (C terminal) SecE PF00584.20 gi|347523536|ref|YP_004781106.1| - 0.00014 21.7 0.0 0.00015 21.6 0.0 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex PufQ PF05398.11 gi|347523536|ref|YP_004781106.1| - 0.0036 17.4 0.1 0.004 17.2 0.1 1.1 1 0 0 1 1 1 1 PufQ cytochrome subunit Spt5-NGN PF03439.13 gi|347523537|ref|YP_004781107.1| - 5.9e-21 74.2 0.1 9.1e-21 73.6 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|347523537|ref|YP_004781107.1| - 2.9e-07 30.2 0.0 6.4e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L11_N PF03946.14 gi|347523538|ref|YP_004781108.1| - 2.9e-20 71.8 1.0 6.1e-20 70.8 1.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|347523538|ref|YP_004781108.1| - 5e-18 65.4 0.3 1e-17 64.4 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|347523539|ref|YP_004781109.1| - 3.1e-38 131.6 0.0 3.7e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|347523540|ref|YP_004781110.1| - 9.6e-27 93.1 0.2 4.8e-26 90.8 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|347523540|ref|YP_004781110.1| - 1e-21 76.7 0.1 2.8e-21 75.3 0.1 1.8 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|347523540|ref|YP_004781110.1| - 0.00042 20.9 15.7 0.00079 20.0 14.2 2.3 2 0 0 2 2 2 1 60s Acidic ribosomal protein HTH_IclR PF09339.10 gi|347523540|ref|YP_004781110.1| - 0.15 11.9 0.6 5.3 6.9 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain PTPS PF01242.19 gi|347523541|ref|YP_004781111.1| - 1.4e-17 63.8 0.1 1.8e-17 63.4 0.1 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF447 PF04289.12 gi|347523542|ref|YP_004781112.1| - 2.4e-16 60.0 0.0 2.8e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) MAF_flag10 PF01973.18 gi|347523543|ref|YP_004781113.1| - 4.4e-16 59.0 0.0 6.2e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Flavoprotein PF02441.19 gi|347523544|ref|YP_004781114.1| - 2.4e-16 59.9 0.1 4.2e-16 59.1 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|347523544|ref|YP_004781114.1| - 1.5e-11 43.6 15.9 5.5e-08 32.3 4.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347523544|ref|YP_004781114.1| - 3.8e-10 39.4 15.2 4.3e-06 26.6 4.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347523544|ref|YP_004781114.1| - 3.8e-09 37.0 26.8 3.8e-08 33.8 12.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|347523544|ref|YP_004781114.1| - 7.3e-09 35.6 14.5 0.00034 20.7 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523544|ref|YP_004781114.1| - 8.3e-09 36.3 8.1 0.0003 21.7 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|347523544|ref|YP_004781114.1| - 4e-08 33.3 10.9 7.7e-08 32.4 10.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523544|ref|YP_004781114.1| - 8e-07 29.1 12.5 1.2e-06 28.6 11.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347523544|ref|YP_004781114.1| - 7.6e-06 26.3 6.4 0.016 15.7 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347523544|ref|YP_004781114.1| - 1.3e-05 25.3 14.0 0.011 16.2 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347523544|ref|YP_004781114.1| - 7.9e-05 22.5 15.3 0.0056 16.7 4.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|347523544|ref|YP_004781114.1| - 0.0009 20.0 12.1 0.034 15.0 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347523544|ref|YP_004781114.1| - 0.0089 16.9 26.0 0.099 13.6 8.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|347523544|ref|YP_004781114.1| - 0.0099 16.1 14.9 0.024 14.8 12.0 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523544|ref|YP_004781114.1| - 0.041 14.4 13.0 0.21 12.2 1.0 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|347523544|ref|YP_004781114.1| - 0.28 11.7 13.8 0.82 10.3 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|347523544|ref|YP_004781114.1| - 0.31 11.8 14.7 0.098 13.4 2.3 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain PNP_UDP_1 PF01048.20 gi|347523545|ref|YP_004781115.1| - 1.9e-20 73.1 0.0 2.3e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Hist_deacetyl PF00850.19 gi|347523546|ref|YP_004781116.1| - 3.3e-66 223.9 0.0 4.3e-66 223.5 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain tRNA-synt_1f PF01921.18 gi|347523547|ref|YP_004781117.1| - 1.2e-94 317.2 0.0 1.7e-94 316.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) PEGSRP PF07623.11 gi|347523547|ref|YP_004781117.1| - 0.0058 16.4 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1584) Zn_Tnp_IS1595 PF12760.7 gi|347523547|ref|YP_004781117.1| - 0.014 15.4 0.4 0.014 15.4 0.4 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|347523547|ref|YP_004781117.1| - 0.22 11.4 0.9 0.41 10.5 0.9 1.4 1 0 0 1 1 1 0 Domain found in IF2B/IF5 FAA_hydro_N_2 PF18288.1 gi|347523547|ref|YP_004781117.1| - 0.29 11.6 1.1 2.1 8.8 0.2 2.4 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 Ivy PF08816.11 gi|347523548|ref|YP_004781118.1| - 0.17 12.1 0.4 0.19 11.9 0.4 1.2 1 0 0 1 1 1 0 Inhibitor of vertebrate lysozyme (Ivy) GCV_T PF01571.21 gi|347523549|ref|YP_004781119.1| - 1.2e-75 254.3 0.0 1.4e-75 254.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|347523549|ref|YP_004781119.1| - 2.1e-16 59.6 0.2 4.7e-16 58.5 0.2 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Ion_trans_2 PF07885.16 gi|347523550|ref|YP_004781120.1| - 1.1e-18 67.0 9.0 1.1e-18 67.0 9.0 2.2 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|347523550|ref|YP_004781120.1| - 1.4e-07 31.0 9.7 3e-07 29.9 9.7 1.5 1 1 0 1 1 1 1 Ion transport protein IRK PF01007.20 gi|347523550|ref|YP_004781120.1| - 0.0054 16.6 0.6 0.011 15.6 0.6 1.5 1 0 0 1 1 1 1 Inward rectifier potassium channel transmembrane domain Lig_chan PF00060.26 gi|347523550|ref|YP_004781120.1| - 0.27 11.1 0.8 0.48 10.3 0.8 1.4 1 0 0 1 1 1 0 Ligand-gated ion channel DUF21 PF01595.20 gi|347523550|ref|YP_004781120.1| - 0.62 9.8 6.2 0.22 11.2 1.9 2.3 2 0 0 2 2 2 0 Cyclin M transmembrane N-terminal domain Snf7 PF03357.21 gi|347523551|ref|YP_004781121.1| - 0.0034 17.0 0.6 0.0034 17.0 0.6 1.4 2 0 0 2 2 2 1 Snf7 LOH1CR12 PF10158.9 gi|347523551|ref|YP_004781121.1| - 0.018 15.1 0.9 0.033 14.2 0.7 1.5 1 1 0 1 1 1 0 Tumour suppressor protein DUF1830 PF08865.11 gi|347523551|ref|YP_004781121.1| - 0.11 12.5 0.1 9.5 6.3 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1830) YabA PF06156.13 gi|347523551|ref|YP_004781121.1| - 0.12 13.0 3.2 0.17 12.5 1.5 2.0 2 1 0 2 2 2 0 Initiation control protein YabA DUF433 PF04255.14 gi|347523552|ref|YP_004781122.1| - 0.064 13.1 0.1 0.12 12.2 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF433) Corona_NS2A PF05213.12 gi|347523552|ref|YP_004781122.1| - 0.09 12.1 0.0 0.095 12.0 0.0 1.1 1 0 0 1 1 1 0 Coronavirus NS2A protein FeoA PF04023.14 gi|347523553|ref|YP_004781123.1| - 3e-18 65.9 1.7 3.3e-18 65.7 1.7 1.0 1 0 0 1 1 1 1 FeoA domain NfeD PF01957.18 gi|347523553|ref|YP_004781123.1| - 0.016 15.6 0.7 1.3 9.4 0.2 2.2 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DUF2931 PF11153.8 gi|347523553|ref|YP_004781123.1| - 0.068 12.9 0.1 0.076 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2931) P5CR_dimer PF14748.6 gi|347523554|ref|YP_004781124.1| - 5.1e-25 87.7 1.1 1.1e-24 86.6 0.2 2.0 2 1 1 3 3 3 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|347523554|ref|YP_004781124.1| - 8.8e-15 55.1 1.8 1.3e-14 54.5 0.4 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|347523554|ref|YP_004781124.1| - 7.1e-07 29.0 1.0 7.1e-06 25.7 1.0 2.1 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|347523554|ref|YP_004781124.1| - 1.6e-06 28.4 0.1 2.8e-06 27.6 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|347523554|ref|YP_004781124.1| - 3.5e-05 23.8 0.5 0.1 12.6 0.1 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|347523554|ref|YP_004781124.1| - 0.00014 21.7 2.1 0.00035 20.4 2.1 1.7 1 0 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|347523554|ref|YP_004781124.1| - 0.0017 17.7 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|347523554|ref|YP_004781124.1| - 0.0021 17.6 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|347523554|ref|YP_004781124.1| - 0.0027 17.6 0.1 0.0048 16.8 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|347523554|ref|YP_004781124.1| - 0.0095 16.0 0.1 0.016 15.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|347523554|ref|YP_004781124.1| - 0.085 13.1 0.5 0.81 10.0 0.1 2.2 1 1 1 2 2 2 0 TrkA-N domain DapB_N PF01113.20 gi|347523554|ref|YP_004781124.1| - 0.1 12.7 0.1 0.2 11.8 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ACT_7 PF13840.6 gi|347523554|ref|YP_004781124.1| - 0.12 12.2 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 ACT domain S4 PF01479.25 gi|347523555|ref|YP_004781125.1| - 0.11 12.3 0.1 0.32 10.8 0.1 1.8 1 0 0 1 1 1 0 S4 domain AdoMet_dc PF02675.15 gi|347523556|ref|YP_004781126.1| - 6.9e-34 116.3 0.1 7.8e-34 116.1 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|347523556|ref|YP_004781126.1| - 0.16 11.8 0.1 0.22 11.3 0.1 1.2 1 0 0 1 1 1 0 Stage VI sporulation protein F Cytochrom_c3_2 PF14537.6 gi|347523558|ref|YP_004781128.1| - 3.1e-06 27.5 24.4 0.025 15.1 9.3 4.6 2 1 1 3 3 3 2 Cytochrome c3 Cytochrome_C7 PF14522.6 gi|347523558|ref|YP_004781128.1| - 1.2e-05 25.2 32.2 0.077 13.0 8.3 5.5 2 1 3 5 5 5 5 Cytochrome c7 and related cytochrome c Cytochrome_C554 PF13435.6 gi|347523558|ref|YP_004781128.1| - 0.0004 21.3 25.1 0.0024 18.7 0.3 5.7 5 1 0 5 5 5 2 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.10 gi|347523558|ref|YP_004781128.1| - 0.0026 17.5 4.9 0.0026 17.5 4.9 6.8 4 3 2 6 6 6 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 gi|347523558|ref|YP_004781128.1| - 0.11 12.8 29.7 3.9 7.9 3.6 4.3 2 1 0 3 3 3 0 Class III cytochrome C family DnaJ_CXXCXGXG PF00684.19 gi|347523558|ref|YP_004781128.1| - 1.4 9.4 20.9 3.1 8.2 5.7 4.3 3 2 0 3 3 3 0 DnaJ central domain DUF5591 PF17884.1 gi|347523559|ref|YP_004781129.1| - 1.9e-17 63.6 0.0 2.6e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) DUF725 PF05267.12 gi|347523560|ref|YP_004781130.1| - 0.087 12.8 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF725) HTH_23 PF13384.6 gi|347523561|ref|YP_004781131.1| - 9.5e-06 25.3 0.4 0.0071 16.1 0.0 2.8 2 1 0 2 2 2 2 Homeodomain-like domain TrmB PF01978.19 gi|347523561|ref|YP_004781131.1| - 4e-05 23.4 0.1 0.00031 20.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|347523561|ref|YP_004781131.1| - 0.00017 21.4 1.1 0.24 11.3 0.1 2.5 2 1 0 2 2 2 2 MarR family HTH_Crp_2 PF13545.6 gi|347523561|ref|YP_004781131.1| - 0.00025 21.0 0.2 0.13 12.2 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain FaeA PF04703.12 gi|347523561|ref|YP_004781131.1| - 0.00058 20.2 0.0 0.0017 18.7 0.0 1.7 2 0 0 2 2 2 1 FaeA-like protein HTH_24 PF13412.6 gi|347523561|ref|YP_004781131.1| - 0.0006 19.3 0.2 0.11 12.0 0.0 2.6 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|347523561|ref|YP_004781131.1| - 0.0037 17.0 0.1 0.038 13.7 0.0 2.1 2 0 0 2 2 2 1 LexA DNA binding domain HTH_38 PF13936.6 gi|347523561|ref|YP_004781131.1| - 0.0062 16.3 0.4 0.43 10.4 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|347523561|ref|YP_004781131.1| - 0.022 14.6 1.9 2.1 8.2 0.2 2.7 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.6 gi|347523561|ref|YP_004781131.1| - 0.03 14.0 0.0 0.11 12.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DUF1627 PF07789.12 gi|347523561|ref|YP_004781131.1| - 0.043 13.5 0.0 0.059 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1627) HTH_20 PF12840.7 gi|347523561|ref|YP_004781131.1| - 0.05 13.7 0.2 2.9 8.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|347523561|ref|YP_004781131.1| - 0.07 12.8 0.2 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 AbiEi_4 PF13338.6 gi|347523561|ref|YP_004781131.1| - 0.081 13.1 1.9 1.8 8.8 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin PaaX PF07848.12 gi|347523561|ref|YP_004781131.1| - 0.088 13.0 0.4 0.2 11.9 0.4 1.5 1 0 0 1 1 1 0 PaaX-like protein VEG PF06257.11 gi|347523561|ref|YP_004781131.1| - 0.09 12.8 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Biofilm formation stimulator VEG DUF2122 PF09895.9 gi|347523562|ref|YP_004781132.1| - 1.8e-34 118.3 0.0 2.4e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) SpoU_methylase PF00588.19 gi|347523562|ref|YP_004781132.1| - 0.091 12.9 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family ABC_tran PF00005.27 gi|347523563|ref|YP_004781133.1| - 1.1e-17 64.8 0.0 1.5e-17 64.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523563|ref|YP_004781133.1| - 3.7e-11 43.4 0.0 7.3e-05 22.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|347523563|ref|YP_004781133.1| - 0.00014 22.5 0.1 0.00021 21.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523563|ref|YP_004781133.1| - 0.00017 21.2 0.1 0.00032 20.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|347523563|ref|YP_004781133.1| - 0.0011 18.5 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|347523563|ref|YP_004781133.1| - 0.0052 16.4 0.1 0.0082 15.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347523563|ref|YP_004781133.1| - 0.0054 17.1 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|347523563|ref|YP_004781133.1| - 0.042 13.8 0.0 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|347523563|ref|YP_004781133.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 gi|347523563|ref|YP_004781133.1| - 0.08 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|347523563|ref|YP_004781133.1| - 0.083 12.8 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.6 gi|347523563|ref|YP_004781133.1| - 0.084 13.1 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|347523563|ref|YP_004781133.1| - 0.095 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|347523563|ref|YP_004781133.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|347523563|ref|YP_004781133.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|347523563|ref|YP_004781133.1| - 0.36 9.4 0.1 0.88 8.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain DNA_methylase PF00145.17 gi|347523568|ref|YP_004781138.1| - 2.1e-49 168.7 0.0 3.9e-33 115.2 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|347523568|ref|YP_004781138.1| - 0.0076 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|347523568|ref|YP_004781138.1| - 0.2 11.2 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain TFIIE_alpha PF02002.17 gi|347523569|ref|YP_004781139.1| - 4.9e-20 71.3 0.4 4.9e-20 71.3 0.4 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit GntR PF00392.21 gi|347523569|ref|YP_004781139.1| - 2.2e-05 24.0 2.8 3e-05 23.6 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|347523569|ref|YP_004781139.1| - 0.00054 19.5 0.6 0.001 18.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|347523569|ref|YP_004781139.1| - 0.0027 17.5 0.0 0.0046 16.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|347523569|ref|YP_004781139.1| - 0.0037 17.2 0.0 0.0086 16.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|347523569|ref|YP_004781139.1| - 0.0041 17.0 1.2 0.0075 16.2 0.1 1.9 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|347523569|ref|YP_004781139.1| - 0.008 16.0 0.0 0.018 14.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|347523569|ref|YP_004781139.1| - 0.011 15.7 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rad50_zn_hook PF04423.14 gi|347523569|ref|YP_004781139.1| - 0.013 15.3 0.2 0.013 15.3 0.2 2.5 3 0 0 3 3 3 0 Rad50 zinc hook motif HTH_9 PF08221.11 gi|347523569|ref|YP_004781139.1| - 0.017 15.2 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phage_endo_I PF05367.11 gi|347523569|ref|YP_004781139.1| - 0.018 14.6 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Phage endonuclease I MarR_2 PF12802.7 gi|347523569|ref|YP_004781139.1| - 0.022 14.7 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family TF_Zn_Ribbon PF08271.12 gi|347523569|ref|YP_004781139.1| - 0.025 14.1 0.2 0.065 12.8 0.2 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|347523569|ref|YP_004781139.1| - 0.026 14.1 0.3 0.061 12.9 0.3 1.6 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger EAP30 PF04157.16 gi|347523569|ref|YP_004781139.1| - 0.039 13.2 0.1 0.078 12.2 0.0 1.5 2 0 0 2 2 2 0 EAP30/Vps36 family zf-NADH-PPase PF09297.11 gi|347523569|ref|YP_004781139.1| - 0.039 13.6 0.1 0.093 12.4 0.0 1.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|347523569|ref|YP_004781139.1| - 0.051 13.6 0.3 0.16 12.1 0.3 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rrf2 PF02082.20 gi|347523569|ref|YP_004781139.1| - 0.059 13.7 0.2 0.14 12.6 0.0 1.6 2 0 0 2 2 1 0 Transcriptional regulator zf-ribbon_3 PF13248.6 gi|347523569|ref|YP_004781139.1| - 0.062 12.7 0.1 0.062 12.7 0.1 1.5 2 0 0 2 2 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|347523569|ref|YP_004781139.1| - 0.071 12.4 0.2 0.17 11.2 0.2 1.7 1 0 0 1 1 1 0 Transcription factor zinc-finger HypA PF01155.19 gi|347523569|ref|YP_004781139.1| - 0.097 12.7 0.0 0.25 11.4 0.0 1.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_5 PF01022.20 gi|347523569|ref|YP_004781139.1| - 0.14 12.1 0.0 0.36 10.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family zinc_ribbon_2 PF13240.6 gi|347523569|ref|YP_004781139.1| - 0.14 11.9 0.1 0.25 11.1 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HTH_3 PF01381.22 gi|347523570|ref|YP_004781140.1| - 2.1e-10 40.5 0.7 3.7e-10 39.7 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|347523570|ref|YP_004781140.1| - 1.7e-09 37.8 1.3 4.6e-09 36.5 1.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|347523570|ref|YP_004781140.1| - 2.7e-07 30.5 0.7 8.8e-07 28.9 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|347523570|ref|YP_004781140.1| - 0.0002 21.2 0.7 0.00045 20.0 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|347523570|ref|YP_004781140.1| - 0.064 13.2 0.1 0.13 12.2 0.1 1.5 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain MqsA_antitoxin PF15731.5 gi|347523570|ref|YP_004781140.1| - 0.099 12.7 0.8 0.27 11.4 0.1 1.9 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DZR PF12773.7 gi|347523570|ref|YP_004781140.1| - 0.11 12.6 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|347523570|ref|YP_004781140.1| - 3.7 7.1 5.9 1.7 8.2 0.5 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Trp_syntA PF00290.20 gi|347523573|ref|YP_004781143.1| - 1.9e-27 95.8 0.0 2.5e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|347523573|ref|YP_004781143.1| - 1.9e-05 24.2 0.0 3.1e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 PcrB family NanE PF04131.14 gi|347523573|ref|YP_004781143.1| - 0.001 18.3 0.1 0.0015 17.7 0.1 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|347523573|ref|YP_004781143.1| - 0.0028 16.9 0.0 0.0046 16.2 0.0 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|347523573|ref|YP_004781143.1| - 0.01 15.3 0.1 0.015 14.7 0.1 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein ThiG PF05690.14 gi|347523573|ref|YP_004781143.1| - 0.018 14.3 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|347523573|ref|YP_004781143.1| - 0.15 11.0 0.3 0.21 10.6 0.3 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PadR PF03551.14 gi|347523574|ref|YP_004781144.1| - 8.4e-18 64.1 1.0 1.6e-17 63.2 0.2 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|347523574|ref|YP_004781144.1| - 0.0011 19.1 0.0 0.0022 18.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|347523574|ref|YP_004781144.1| - 0.0025 17.7 0.8 0.018 14.9 0.2 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|347523574|ref|YP_004781144.1| - 0.0033 17.3 1.0 0.0043 16.9 0.2 1.7 2 0 0 2 2 2 1 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|347523574|ref|YP_004781144.1| - 0.031 14.3 0.3 0.038 14.1 0.3 1.3 1 0 0 1 1 1 0 Replication-relaxation Phage_pRha PF09669.10 gi|347523574|ref|YP_004781144.1| - 0.038 14.5 0.0 0.078 13.5 0.0 1.5 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) FliT PF05400.13 gi|347523574|ref|YP_004781144.1| - 0.042 14.7 4.3 0.077 13.8 3.8 1.8 1 1 0 1 1 1 0 Flagellar protein FliT HTH_5 PF01022.20 gi|347523574|ref|YP_004781144.1| - 0.068 13.1 0.1 6.2 6.8 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family EAL PF00563.20 gi|347523574|ref|YP_004781144.1| - 0.069 12.7 0.3 0.13 11.8 0.3 1.5 1 1 0 1 1 1 0 EAL domain FUR PF01475.19 gi|347523574|ref|YP_004781144.1| - 0.093 12.9 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family RTP PF02334.16 gi|347523574|ref|YP_004781144.1| - 0.099 13.3 0.0 0.15 12.7 0.0 1.3 1 0 0 1 1 1 0 Replication terminator protein MMPL PF03176.15 gi|347523575|ref|YP_004781145.1| - 2.2e-63 214.2 22.7 3.7e-33 114.9 8.2 2.4 2 0 0 2 2 2 2 MMPL family CHASE6_C PF17150.4 gi|347523575|ref|YP_004781145.1| - 0.0059 17.2 0.4 1.6 9.5 0.0 3.6 3 0 0 3 3 3 1 C-terminal domain of two-partite extracellular sensor domain PGDH_C PF16896.5 gi|347523575|ref|YP_004781145.1| - 0.29 11.1 1.1 2.2 8.2 0.2 2.7 2 0 0 2 2 2 0 Phosphogluconate dehydrogenase (decarboxylating) C-term DUF4405 PF14358.6 gi|347523577|ref|YP_004781147.1| - 2.7e-11 43.8 0.9 3.6e-11 43.4 0.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) HTH_AraC PF00165.23 gi|347523577|ref|YP_004781147.1| - 0.2 11.8 0.0 0.34 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF373 PF04123.13 gi|347523578|ref|YP_004781148.1| - 8.8 5.7 15.1 41 3.4 15.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF373) HTH_45 PF14947.6 gi|347523579|ref|YP_004781149.1| - 5.2e-14 52.0 0.0 6.1e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix PadR PF03551.14 gi|347523579|ref|YP_004781149.1| - 2.3e-06 27.5 0.1 3.2e-05 23.8 0.1 2.1 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|347523579|ref|YP_004781149.1| - 3.4e-06 26.9 0.2 7e-06 25.8 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|347523579|ref|YP_004781149.1| - 3.9e-06 26.7 1.0 1.1e-05 25.2 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|347523579|ref|YP_004781149.1| - 7e-06 26.5 0.4 1.5e-05 25.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|347523579|ref|YP_004781149.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|347523579|ref|YP_004781149.1| - 0.00036 20.0 0.2 0.00074 19.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|347523579|ref|YP_004781149.1| - 0.00056 20.2 0.0 0.00074 19.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator Rio2_N PF09202.11 gi|347523579|ref|YP_004781149.1| - 0.0016 18.6 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 Rio2, N-terminal DUF1495 PF07381.11 gi|347523579|ref|YP_004781149.1| - 0.0028 17.5 0.0 0.0055 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 gi|347523579|ref|YP_004781149.1| - 0.011 15.8 0.2 0.012 15.6 0.2 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_42 PF06224.12 gi|347523579|ref|YP_004781149.1| - 0.017 14.7 0.1 0.021 14.4 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|347523579|ref|YP_004781149.1| - 0.024 14.6 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF3375 PF11855.8 gi|347523579|ref|YP_004781149.1| - 0.03 13.3 0.1 0.037 13.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) ANAPC2 PF08672.11 gi|347523579|ref|YP_004781149.1| - 0.031 14.8 0.2 0.07 13.6 0.2 1.8 1 1 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 Dimerisation2 PF16864.5 gi|347523579|ref|YP_004781149.1| - 0.04 13.9 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain Mrr_N PF14338.6 gi|347523579|ref|YP_004781149.1| - 0.041 14.0 0.0 0.13 12.4 0.0 1.7 1 1 1 2 2 2 0 Mrr N-terminal domain TFIIE_alpha PF02002.17 gi|347523579|ref|YP_004781149.1| - 0.044 13.7 0.1 0.068 13.0 0.1 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|347523579|ref|YP_004781149.1| - 0.046 13.5 0.9 0.076 12.8 0.2 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|347523579|ref|YP_004781149.1| - 0.061 13.3 0.0 0.065 13.2 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) RQC PF09382.10 gi|347523579|ref|YP_004781149.1| - 0.068 12.9 0.0 0.09 12.6 0.0 1.2 1 0 0 1 1 1 0 RQC domain DUF2250 PF10007.9 gi|347523579|ref|YP_004781149.1| - 0.093 12.9 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.12 gi|347523579|ref|YP_004781149.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.5 1 1 0 1 1 1 0 PaaX-like protein HTH_20 PF12840.7 gi|347523579|ref|YP_004781149.1| - 0.21 11.7 2.1 0.18 11.9 0.4 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain PhoH PF02562.16 gi|347523580|ref|YP_004781150.1| - 3.6e-53 180.1 0.0 4.8e-53 179.7 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|347523580|ref|YP_004781150.1| - 3.6e-08 33.1 0.5 1.1e-07 31.5 0.5 1.9 1 1 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|347523580|ref|YP_004781150.1| - 1.9e-05 24.6 0.0 0.012 15.6 0.0 2.7 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|347523580|ref|YP_004781150.1| - 0.00086 19.1 0.0 0.0026 17.6 0.0 1.8 1 0 0 1 1 1 1 KH domain AAA_30 PF13604.6 gi|347523580|ref|YP_004781150.1| - 0.0058 16.4 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|347523580|ref|YP_004781150.1| - 0.073 13.6 0.0 0.15 12.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter KH_7 PF17214.3 gi|347523580|ref|YP_004781150.1| - 0.08 12.9 0.1 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 KH domain IstB_IS21 PF01695.17 gi|347523580|ref|YP_004781150.1| - 0.16 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AMP-binding_C_2 PF14535.6 gi|347523581|ref|YP_004781151.1| - 5.8e-13 49.0 0.0 1e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|347523581|ref|YP_004781151.1| - 0.0054 15.4 0.0 0.008 14.8 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme GATase PF00117.28 gi|347523582|ref|YP_004781152.1| - 6.7e-19 68.4 0.0 7.9e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|347523582|ref|YP_004781152.1| - 5.7e-10 39.1 0.0 1.2e-09 38.1 0.0 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|347523582|ref|YP_004781152.1| - 4.9e-07 29.8 0.0 3.9e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|347523582|ref|YP_004781152.1| - 1.2e-05 25.2 0.6 7.1e-05 22.7 0.6 2.1 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|347523582|ref|YP_004781152.1| - 0.00023 21.0 0.0 0.00033 20.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family ParBc PF02195.18 gi|347523582|ref|YP_004781152.1| - 0.1 12.9 0.0 0.92 9.8 0.1 2.1 2 0 0 2 2 2 0 ParB-like nuclease domain PRA-CH PF01502.18 gi|347523583|ref|YP_004781153.1| - 3.7e-30 103.6 0.0 5e-30 103.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Chorismate_bind PF00425.18 gi|347523584|ref|YP_004781154.1| - 7.1e-88 294.5 0.0 8.4e-88 294.3 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|347523584|ref|YP_004781154.1| - 1.6e-05 25.1 0.0 0.00041 20.6 0.0 2.6 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region Zfx_Zfy_act PF04704.13 gi|347523584|ref|YP_004781154.1| - 0.062 12.4 0.1 0.084 12.0 0.1 1.1 1 0 0 1 1 1 0 Zfx / Zfy transcription activation region GATase PF00117.28 gi|347523585|ref|YP_004781155.1| - 2.3e-50 171.0 0.0 2.7e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|347523585|ref|YP_004781155.1| - 5.9e-14 52.3 0.1 1.2e-13 51.4 0.1 1.4 1 1 0 1 1 1 1 Peptidase C26 YdjM PF04307.14 gi|347523586|ref|YP_004781156.1| - 3.1e-10 39.7 8.7 1.8e-09 37.1 8.7 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1286 PF06939.11 gi|347523586|ref|YP_004781156.1| - 0.0002 21.6 0.8 0.00026 21.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) DUF4184 PF13803.6 gi|347523586|ref|YP_004781156.1| - 0.02 14.6 0.3 0.028 14.1 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) Fea1 PF07692.11 gi|347523586|ref|YP_004781156.1| - 0.054 12.5 0.1 0.063 12.3 0.1 1.1 1 0 0 1 1 1 0 Low iron-inducible periplasmic protein Peptidase_M20 PF01546.28 gi|347523587|ref|YP_004781157.1| - 5.3e-34 117.7 0.0 6.8e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|347523587|ref|YP_004781157.1| - 1e-14 54.3 0.0 2e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|347523587|ref|YP_004781157.1| - 4.2e-06 26.6 0.0 6.5e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 TauE PF01925.19 gi|347523588|ref|YP_004781158.1| - 5.3e-43 147.3 45.2 6.9e-43 147.0 45.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Fumerase_C PF05683.12 gi|347523589|ref|YP_004781159.1| - 8e-46 156.0 0.0 9.6e-46 155.7 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Methyltr_RsmB-F PF01189.17 gi|347523590|ref|YP_004781160.1| - 4.7e-42 143.9 0.0 1.1e-41 142.7 0.0 1.6 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|347523590|ref|YP_004781160.1| - 8e-16 57.8 4.0 1.9e-15 56.6 4.0 1.6 1 0 0 1 1 1 1 PUA domain FtsJ PF01728.19 gi|347523590|ref|YP_004781160.1| - 2.6e-06 27.7 0.0 1.3e-05 25.4 0.0 2.0 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|347523590|ref|YP_004781160.1| - 8.3e-05 22.4 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347523590|ref|YP_004781160.1| - 0.012 16.2 0.1 0.15 12.8 0.0 2.6 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347523590|ref|YP_004781160.1| - 0.044 14.5 0.0 0.085 13.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0113 PF03657.13 gi|347523590|ref|YP_004781160.1| - 0.078 13.3 0.2 0.14 12.5 0.2 1.4 1 0 0 1 1 1 0 UPF0113 PUA domain Cons_hypoth95 PF03602.15 gi|347523590|ref|YP_004781160.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_8 PF05148.15 gi|347523590|ref|YP_004781160.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase Methyltransf_11 PF08241.12 gi|347523590|ref|YP_004781160.1| - 0.15 12.8 0.1 2.6 8.8 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain PIN_6 PF17146.4 gi|347523591|ref|YP_004781161.1| - 3.9e-19 68.9 0.1 5.3e-19 68.5 0.1 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease NOB1_Zn_bind PF08772.11 gi|347523591|ref|YP_004781161.1| - 0.0017 18.5 0.1 0.0036 17.4 0.1 1.5 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|347523591|ref|YP_004781161.1| - 0.002 17.5 3.0 0.092 12.2 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|347523591|ref|YP_004781161.1| - 0.0024 17.5 1.2 0.74 9.5 0.4 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain PIN_4 PF13638.6 gi|347523591|ref|YP_004781161.1| - 0.0048 17.2 0.0 0.0061 16.8 0.0 1.2 1 0 0 1 1 1 1 PIN domain DNA_ligase_ZBD PF03119.16 gi|347523591|ref|YP_004781161.1| - 0.015 15.3 6.6 0.048 13.7 1.7 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain ADK_lid PF05191.14 gi|347523591|ref|YP_004781161.1| - 0.021 14.8 2.9 0.19 11.7 2.9 2.3 1 1 0 1 1 1 0 Adenylate kinase, active site lid HypA PF01155.19 gi|347523591|ref|YP_004781161.1| - 0.027 14.5 0.6 0.064 13.3 0.6 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|347523591|ref|YP_004781161.1| - 0.029 14.1 3.2 0.095 12.5 3.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|347523591|ref|YP_004781161.1| - 0.03 14.2 0.5 0.042 13.7 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|347523591|ref|YP_004781161.1| - 0.032 14.2 0.2 0.055 13.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon PIN_5 PF08745.11 gi|347523591|ref|YP_004781161.1| - 0.061 12.7 3.0 0.13 11.6 1.5 2.1 1 1 1 2 2 2 0 PINc domain ribonuclease zf-IS66 PF13005.7 gi|347523591|ref|YP_004781161.1| - 0.068 13.6 2.5 8 6.9 0.2 2.8 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 PIN PF01850.21 gi|347523591|ref|YP_004781161.1| - 0.073 13.6 0.2 0.22 12.0 0.1 1.7 1 1 1 2 2 2 0 PIN domain SsgA PF04686.12 gi|347523591|ref|YP_004781161.1| - 0.081 12.9 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Streptomyces sporulation and cell division protein, SsgA Auto_anti-p27 PF06677.12 gi|347523591|ref|YP_004781161.1| - 0.09 12.9 2.7 0.55 10.4 0.4 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|347523591|ref|YP_004781161.1| - 0.094 12.5 3.3 0.37 10.6 0.5 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|347523591|ref|YP_004781161.1| - 0.097 12.6 5.0 3.9 7.5 0.1 2.9 3 0 0 3 3 3 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|347523591|ref|YP_004781161.1| - 0.13 12.2 2.3 0.9 9.5 1.2 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|347523591|ref|YP_004781161.1| - 0.18 12.0 4.8 0.74 10.0 4.8 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Ogr_Delta PF04606.12 gi|347523591|ref|YP_004781161.1| - 0.28 11.2 2.3 3.2 7.8 0.6 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Rubredoxin_2 PF18073.1 gi|347523591|ref|YP_004781161.1| - 0.8 9.5 5.3 3.4 7.5 5.3 1.9 1 1 0 1 1 1 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|347523591|ref|YP_004781161.1| - 0.84 9.2 4.8 4.1 7.0 4.8 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|347523591|ref|YP_004781161.1| - 1.8 8.5 4.3 17 5.4 0.2 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF1272 PF06906.11 gi|347523591|ref|YP_004781161.1| - 2.7 8.2 5.9 9.5 6.4 6.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Zn_Tnp_IS1595 PF12760.7 gi|347523591|ref|YP_004781161.1| - 7.2 6.7 7.7 9 6.4 0.8 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF4129 PF13559.6 gi|347523592|ref|YP_004781162.1| - 0.00013 22.2 1.5 0.0027 17.9 0.3 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4350 PF14258.6 gi|347523593|ref|YP_004781163.1| - 0.0027 18.1 0.0 0.0089 16.4 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) Sulfolobus_pRN PF05584.11 gi|347523593|ref|YP_004781163.1| - 0.073 13.1 3.5 0.09 12.8 0.1 2.8 4 0 0 4 4 4 0 Sulfolobus plasmid regulatory protein AAA_3 PF07726.11 gi|347523594|ref|YP_004781164.1| - 2.2e-67 224.9 0.1 3.3e-67 224.3 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|347523594|ref|YP_004781164.1| - 1.8e-22 79.0 1.6 1.8e-22 79.0 1.6 2.2 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|347523594|ref|YP_004781164.1| - 1.5e-17 63.9 0.0 3.1e-17 62.9 0.0 1.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|347523594|ref|YP_004781164.1| - 4.9e-08 33.5 0.0 7.6e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|347523594|ref|YP_004781164.1| - 1.9e-06 27.2 0.0 2.8e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|347523594|ref|YP_004781164.1| - 5.9e-06 26.1 0.0 3.3e-05 23.7 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|347523594|ref|YP_004781164.1| - 5.5e-05 22.9 0.0 0.00026 20.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|347523594|ref|YP_004781164.1| - 0.00088 19.7 0.0 0.002 18.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|347523594|ref|YP_004781164.1| - 0.0012 18.3 0.2 0.89 8.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|347523594|ref|YP_004781164.1| - 0.17 11.2 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 KaiC DUF58 PF01882.18 gi|347523595|ref|YP_004781165.1| - 1.4e-20 73.4 0.0 4.4e-20 71.8 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|347523595|ref|YP_004781165.1| - 3.4e-05 24.4 0.0 6e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2207 PF09972.9 gi|347523597|ref|YP_004781167.1| - 0.4 9.4 1.9 0.47 9.2 1.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF202 PF02656.15 gi|347523597|ref|YP_004781167.1| - 0.63 10.5 8.6 0.94 10.0 8.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF72 PF01904.18 gi|347523598|ref|YP_004781168.1| - 2e-43 149.0 0.1 2.6e-43 148.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Ribosomal_S2 PF00318.20 gi|347523599|ref|YP_004781169.1| - 3.3e-24 85.3 0.0 3e-14 52.8 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 TraI_2 PF07514.11 gi|347523600|ref|YP_004781170.1| - 0.027 13.4 0.1 0.038 12.9 0.1 1.1 1 0 0 1 1 1 0 Putative helicase ERp29 PF07749.12 gi|347523600|ref|YP_004781170.1| - 0.093 13.6 3.2 0.22 12.5 0.3 2.7 3 0 0 3 3 3 0 Endoplasmic reticulum protein ERp29, C-terminal domain ATP-cone PF03477.16 gi|347523600|ref|YP_004781170.1| - 0.12 12.9 2.7 0.16 12.5 0.5 2.1 2 0 0 2 2 2 0 ATP cone domain FUR PF01475.19 gi|347523600|ref|YP_004781170.1| - 0.23 11.6 3.5 9.3 6.4 0.1 2.9 2 1 1 3 3 3 0 Ferric uptake regulator family Peptidase_A4 PF01828.17 gi|347523601|ref|YP_004781171.1| - 1.4e-05 24.7 3.2 3e-05 23.6 2.8 1.8 1 1 0 1 1 1 1 Peptidase A4 family Arginase PF00491.21 gi|347523602|ref|YP_004781172.1| - 6e-61 206.4 0.2 6.9e-61 206.2 0.2 1.0 1 0 0 1 1 1 1 Arginase family HalOD1 PF18545.1 gi|347523602|ref|YP_004781172.1| - 0.03 14.6 0.5 0.11 12.7 0.1 2.3 2 1 0 2 2 2 0 Halobacterial output domain 1 TMP-TENI PF02581.17 gi|347523602|ref|YP_004781172.1| - 0.035 13.4 0.2 0.049 13.0 0.2 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase CO_dh PF02552.16 gi|347523602|ref|YP_004781172.1| - 0.081 12.7 0.3 0.77 9.5 0.1 2.1 1 1 1 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit RNA_pol_N PF01194.17 gi|347523603|ref|YP_004781173.1| - 1e-29 102.6 0.2 1.2e-29 102.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|347523603|ref|YP_004781173.1| - 0.013 15.7 0.0 0.019 15.2 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) HscB_4_cys PF18256.1 gi|347523603|ref|YP_004781173.1| - 0.014 15.2 0.4 0.025 14.4 0.4 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Ribosomal_S9 PF00380.19 gi|347523604|ref|YP_004781174.1| - 9e-33 113.4 0.1 1.1e-32 113.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|347523605|ref|YP_004781175.1| - 4.8e-09 36.5 0.8 7.1e-05 23.1 0.1 2.6 1 1 2 3 3 3 2 Ribosomal protein L13 DUF5507 PF17612.2 gi|347523605|ref|YP_004781175.1| - 0.19 11.5 0.0 0.24 11.1 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5507) Ribosomal_L18 PF17135.4 gi|347523606|ref|YP_004781176.1| - 1.4e-11 44.2 0.2 1.4e-11 44.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|347523606|ref|YP_004781176.1| - 3.7e-08 34.1 0.1 6.8e-08 33.2 0.1 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF4131 PF13567.6 gi|347523606|ref|YP_004781176.1| - 0.1 12.2 0.4 0.15 11.7 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) RNA_pol_A_bac PF01000.26 gi|347523607|ref|YP_004781177.1| - 6.2e-25 87.8 0.0 3.4e-24 85.4 0.0 2.1 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|347523607|ref|YP_004781177.1| - 6.4e-13 47.9 0.0 9.8e-13 47.3 0.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SLATT_2 PF18183.1 gi|347523607|ref|YP_004781177.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 2 DUF5472 PF17566.2 gi|347523608|ref|YP_004781178.1| - 0.13 12.2 0.5 0.66 10.0 0.3 2.1 2 1 0 2 2 2 0 Family of unknown function (DUF5472) DUF983 PF06170.12 gi|347523608|ref|YP_004781178.1| - 2.7 8.5 5.4 14 6.1 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Iso_dh PF00180.20 gi|347523609|ref|YP_004781179.1| - 1.2e-86 291.1 0.0 1.4e-86 290.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|347523609|ref|YP_004781179.1| - 0.013 15.0 0.1 0.022 14.2 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA PGM_PMM_II PF02879.16 gi|347523609|ref|YP_004781179.1| - 0.097 13.3 0.0 1.5 9.5 0.0 2.7 2 1 1 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Diphthami_syn_2 PF01902.17 gi|347523610|ref|YP_004781180.1| - 2.8e-52 177.4 0.0 3.4e-52 177.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase Thioredoxin PF00085.20 gi|347523611|ref|YP_004781181.1| - 2e-10 40.6 0.0 7.2e-10 38.8 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|347523611|ref|YP_004781181.1| - 2.1e-06 28.1 0.0 3.8e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|347523611|ref|YP_004781181.1| - 0.00014 21.7 0.1 0.019 14.8 0.0 2.3 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 gi|347523611|ref|YP_004781181.1| - 0.00021 21.3 0.3 0.00033 20.6 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|347523611|ref|YP_004781181.1| - 0.0057 16.5 0.0 0.0098 15.7 0.0 1.5 1 0 0 1 1 1 1 F plasmid transfer operon protein Redoxin PF08534.10 gi|347523611|ref|YP_004781181.1| - 0.04 13.6 0.0 0.058 13.1 0.0 1.4 1 1 0 1 1 1 0 Redoxin Glutaredoxin PF00462.24 gi|347523611|ref|YP_004781181.1| - 0.041 14.1 0.1 0.08 13.2 0.1 1.5 1 0 0 1 1 1 0 Glutaredoxin CitMHS PF03600.16 gi|347523613|ref|YP_004781183.1| - 2e-31 109.3 39.7 8.9e-17 61.2 18.5 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|347523613|ref|YP_004781183.1| - 7.2e-08 31.9 34.6 1.4e-05 24.4 19.6 3.0 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DctM PF06808.12 gi|347523613|ref|YP_004781183.1| - 6.2e-07 28.6 30.3 0.00057 18.8 19.8 2.2 1 1 0 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component bact-PGI_C PF10432.9 gi|347523613|ref|YP_004781183.1| - 0.1 12.6 0.2 0.37 10.8 0.1 1.9 2 0 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal SIS domain Peripla_BP_6 PF13458.6 gi|347523614|ref|YP_004781184.1| - 3.7e-60 204.4 2.2 5.6e-60 203.8 2.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|347523614|ref|YP_004781184.1| - 5.4e-14 52.1 0.0 7.2e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|347523614|ref|YP_004781184.1| - 8.5e-13 48.0 0.2 6.1e-08 32.0 0.1 2.5 2 1 0 2 2 2 2 Periplasmic binding protein domain ABC_sub_bind PF04392.12 gi|347523614|ref|YP_004781184.1| - 0.00046 19.5 0.0 0.00098 18.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter substrate binding protein DUF4366 PF14283.6 gi|347523614|ref|YP_004781184.1| - 0.026 14.6 0.2 0.063 13.3 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Glyco_tran_WecB PF03808.13 gi|347523614|ref|YP_004781184.1| - 0.042 13.8 0.1 0.47 10.4 0.1 2.4 1 1 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family SecD-TM1 PF13721.6 gi|347523614|ref|YP_004781184.1| - 0.063 13.7 0.2 0.16 12.5 0.2 1.7 1 0 0 1 1 1 0 SecD export protein N-terminal TM region BPD_transp_2 PF02653.16 gi|347523615|ref|YP_004781185.1| - 1.3e-26 93.3 45.5 1.7e-26 93.0 45.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Amidohydro_1 PF01979.20 gi|347523616|ref|YP_004781186.1| - 7.6e-09 35.3 0.0 1.2e-05 24.9 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|347523616|ref|YP_004781186.1| - 7.7e-06 25.6 2.9 0.026 14.0 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family SprT-like PF10263.9 gi|347523617|ref|YP_004781187.1| - 0.0021 17.9 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 SprT-like family WLM PF08325.10 gi|347523617|ref|YP_004781187.1| - 0.019 15.1 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 WLM domain Pyr_redox_2 PF07992.14 gi|347523618|ref|YP_004781188.1| - 3.1e-54 184.2 6.4 4.5e-54 183.7 6.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|347523618|ref|YP_004781188.1| - 9e-20 71.0 5.0 1.6e-15 57.4 1.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|347523618|ref|YP_004781188.1| - 4.6e-13 49.1 0.0 4.5e-08 32.7 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|347523618|ref|YP_004781188.1| - 3.6e-11 43.3 0.0 1.5e-10 41.3 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.6 gi|347523618|ref|YP_004781188.1| - 1.5e-07 31.6 11.1 0.00012 22.2 0.1 4.9 4 1 0 4 4 4 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|347523618|ref|YP_004781188.1| - 2.3e-07 29.9 1.6 0.0032 16.2 0.0 4.2 4 0 0 4 4 4 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|347523618|ref|YP_004781188.1| - 5.6e-07 28.9 4.4 0.0075 15.4 0.0 3.4 3 0 0 3 3 3 3 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|347523618|ref|YP_004781188.1| - 4.1e-06 26.1 10.5 0.0061 15.7 0.1 4.3 4 1 0 4 4 4 2 FAD binding domain DAO PF01266.24 gi|347523618|ref|YP_004781188.1| - 0.00012 21.8 18.8 0.0016 18.1 0.2 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|347523618|ref|YP_004781188.1| - 0.00062 19.0 6.4 1.8 7.5 0.0 3.7 3 1 0 4 4 4 3 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|347523618|ref|YP_004781188.1| - 0.00088 18.2 10.1 0.04 12.8 0.1 3.3 3 0 0 3 3 3 2 Tryptophan halogenase TrkA_N PF02254.18 gi|347523618|ref|YP_004781188.1| - 0.0024 18.1 1.1 2 8.7 0.0 2.5 2 0 0 2 2 2 2 TrkA-N domain FAD_binding_3 PF01494.19 gi|347523618|ref|YP_004781188.1| - 0.0034 16.7 4.8 0.34 10.1 1.0 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.6 gi|347523618|ref|YP_004781188.1| - 0.0049 16.9 6.9 3.4 7.6 0.0 4.3 3 1 1 4 4 4 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|347523618|ref|YP_004781188.1| - 0.006 16.0 6.9 0.24 10.7 0.6 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|347523618|ref|YP_004781188.1| - 0.014 15.8 3.1 2 8.9 0.4 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|347523618|ref|YP_004781188.1| - 0.022 13.9 0.2 0.17 11.0 0.0 2.0 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|347523618|ref|YP_004781188.1| - 0.028 13.7 2.2 0.18 11.0 0.1 2.6 3 0 0 3 3 3 0 Thi4 family Shal-type PF11601.8 gi|347523618|ref|YP_004781188.1| - 0.1 12.2 0.2 0.29 10.7 0.2 1.8 1 0 0 1 1 1 0 Shal-type voltage-gated potassium channels, N-terminal 3HCDH_N PF02737.18 gi|347523618|ref|YP_004781188.1| - 0.17 11.7 1.3 0.37 10.6 0.2 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|347523618|ref|YP_004781188.1| - 1.4 8.2 11.4 0.69 9.2 0.6 2.7 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Creatininase PF02633.14 gi|347523619|ref|YP_004781189.1| - 2.9e-30 105.5 0.0 3.8e-30 105.1 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase PP-binding PF00550.25 gi|347523619|ref|YP_004781189.1| - 0.16 12.3 0.0 0.52 10.7 0.0 1.8 2 0 0 2 2 2 0 Phosphopantetheine attachment site Lactamase_B_2 PF12706.7 gi|347523621|ref|YP_004781191.1| - 2.5e-08 33.7 0.1 5e-08 32.7 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|347523621|ref|YP_004781191.1| - 0.00018 21.4 0.0 0.00043 20.2 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|347523621|ref|YP_004781191.1| - 0.003 17.6 0.7 0.0047 17.0 0.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_red PF03358.15 gi|347523622|ref|YP_004781192.1| - 3.5e-28 98.3 0.0 4.5e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|347523622|ref|YP_004781192.1| - 5.6e-12 45.8 0.0 8.1e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF2192 PF09958.9 gi|347523623|ref|YP_004781193.1| - 1.1e-84 283.6 4.6 1.2e-84 283.4 4.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) SnoaL_4 PF13577.6 gi|347523623|ref|YP_004781193.1| - 0.033 14.3 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like domain Methyltr_RsmB-F PF01189.17 gi|347523624|ref|YP_004781194.1| - 2.3e-52 177.6 0.0 3.2e-52 177.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|347523624|ref|YP_004781194.1| - 3.3e-07 30.6 0.0 9.3e-07 29.1 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|347523624|ref|YP_004781194.1| - 0.014 16.1 0.0 0.68 10.7 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347523624|ref|YP_004781194.1| - 0.074 13.7 0.0 1.3 9.7 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|347523624|ref|YP_004781194.1| - 0.094 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|347523624|ref|YP_004781194.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|347523624|ref|YP_004781194.1| - 0.12 12.2 0.0 6.6 6.5 0.0 2.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|347523624|ref|YP_004781194.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|347523624|ref|YP_004781194.1| - 0.16 11.2 0.0 9.9 5.4 0.0 2.2 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family HTH_38 PF13936.6 gi|347523625|ref|YP_004781195.1| - 7.3e-17 60.9 2.0 8.8e-11 41.4 0.1 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|347523625|ref|YP_004781195.1| - 3.2e-16 58.6 0.1 2.4e-05 24.0 0.0 3.2 3 0 0 3 3 3 3 Homeodomain-like domain HTH_7 PF02796.15 gi|347523625|ref|YP_004781195.1| - 1.8e-14 53.6 7.2 5.4e-05 23.2 0.1 3.2 3 0 0 3 3 3 3 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|347523625|ref|YP_004781195.1| - 6.8e-13 48.4 0.9 2.2e-06 27.6 0.0 3.6 3 1 0 3 3 3 3 Winged helix-turn helix HTH_28 PF13518.6 gi|347523625|ref|YP_004781195.1| - 1.1e-12 47.9 0.5 0.00028 20.9 0.2 3.2 3 0 0 3 3 3 3 Helix-turn-helix domain TrmB PF01978.19 gi|347523625|ref|YP_004781195.1| - 7e-11 41.9 2.7 1.7e-05 24.6 0.1 3.3 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_40 PF14493.6 gi|347523625|ref|YP_004781195.1| - 4.4e-08 33.5 0.3 0.0039 17.6 0.1 2.4 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.16 gi|347523625|ref|YP_004781195.1| - 3e-06 27.3 1.6 2.5e-05 24.3 0.7 2.0 1 1 1 2 2 2 2 Transposase HTH_Tnp_1 PF01527.20 gi|347523625|ref|YP_004781195.1| - 3.3e-06 27.3 1.8 0.22 11.8 0.1 3.5 1 1 2 4 4 3 1 Transposase CENP-B_N PF04218.13 gi|347523625|ref|YP_004781195.1| - 4.8e-06 26.1 3.5 0.025 14.2 0.6 3.2 3 0 0 3 3 3 2 CENP-B N-terminal DNA-binding domain Terminase_5 PF06056.12 gi|347523625|ref|YP_004781195.1| - 8.1e-06 25.6 0.0 0.15 11.9 0.0 2.4 2 0 0 2 2 2 2 Putative ATPase subunit of terminase (gpP-like) HTH_17 PF12728.7 gi|347523625|ref|YP_004781195.1| - 2.8e-05 24.2 3.4 0.11 12.7 0.0 3.2 3 0 0 3 3 3 2 Helix-turn-helix domain MarR PF01047.22 gi|347523625|ref|YP_004781195.1| - 9.4e-05 22.3 0.0 1.1 9.2 0.0 3.2 3 0 0 3 3 3 2 MarR family HTH_32 PF13565.6 gi|347523625|ref|YP_004781195.1| - 0.00011 22.7 6.2 0.17 12.5 1.4 2.7 1 1 2 3 3 3 2 Homeodomain-like domain TnsD PF15978.5 gi|347523625|ref|YP_004781195.1| - 0.00019 20.6 0.5 0.048 12.7 0.1 2.2 1 1 1 2 2 2 1 Tn7-like transposition protein D Mor PF08765.11 gi|347523625|ref|YP_004781195.1| - 0.0003 20.7 1.1 0.03 14.3 0.1 2.9 2 1 1 3 3 3 1 Mor transcription activator family HTH_33 PF13592.6 gi|347523625|ref|YP_004781195.1| - 0.00053 19.6 1.0 0.6 9.8 0.0 3.3 3 0 0 3 3 3 1 Winged helix-turn helix HTH_22 PF13309.6 gi|347523625|ref|YP_004781195.1| - 0.00063 19.8 7.8 0.017 15.2 0.3 4.0 2 2 0 3 3 3 1 HTH domain HTH_11 PF08279.12 gi|347523625|ref|YP_004781195.1| - 0.00075 19.4 0.1 2.6 8.1 0.0 3.4 3 1 0 3 3 3 1 HTH domain DUF433 PF04255.14 gi|347523625|ref|YP_004781195.1| - 0.0008 19.2 0.2 11 5.9 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF433) DUF3791 PF12668.7 gi|347523625|ref|YP_004781195.1| - 0.0011 19.0 0.0 0.38 10.8 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF3791) TetR_N PF00440.23 gi|347523625|ref|YP_004781195.1| - 0.0021 17.8 0.0 0.077 12.8 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory proteins, tetR family Mga PF05043.13 gi|347523625|ref|YP_004781195.1| - 0.0033 18.0 0.1 1.1 9.9 0.0 3.0 3 0 0 3 3 3 1 Mga helix-turn-helix domain GerE PF00196.19 gi|347523625|ref|YP_004781195.1| - 0.0033 16.9 0.4 5.2 6.7 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family IF2_N PF04760.15 gi|347523625|ref|YP_004781195.1| - 0.0043 16.9 1.7 0.11 12.4 0.0 3.3 2 1 2 4 4 3 1 Translation initiation factor IF-2, N-terminal region Sigma70_r4 PF04545.16 gi|347523625|ref|YP_004781195.1| - 0.0065 16.0 4.1 2.1 7.9 0.2 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_IclR PF09339.10 gi|347523625|ref|YP_004781195.1| - 0.0083 15.9 0.0 0.97 9.3 0.0 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|347523625|ref|YP_004781195.1| - 0.01 15.5 2.3 0.48 10.1 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 DUF742 PF05331.11 gi|347523625|ref|YP_004781195.1| - 0.011 15.6 0.1 0.028 14.2 0.0 1.7 3 0 0 3 3 1 0 Protein of unknown function (DUF742) Phage_antitermQ PF06530.12 gi|347523625|ref|YP_004781195.1| - 0.014 15.3 3.5 10 6.1 0.1 3.1 3 0 0 3 3 3 0 Phage antitermination protein Q UPF0175 PF03683.13 gi|347523625|ref|YP_004781195.1| - 0.021 14.5 0.0 0.61 9.8 0.0 2.8 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0175) Sigma70_ECF PF07638.11 gi|347523625|ref|YP_004781195.1| - 0.022 14.6 0.3 2 8.2 0.0 2.8 2 1 0 3 3 3 0 ECF sigma factor Ribosomal_S13_N PF08069.12 gi|347523625|ref|YP_004781195.1| - 0.023 14.8 0.1 9.7 6.3 0.0 2.6 2 0 0 2 2 2 0 Ribosomal S13/S15 N-terminal domain HTH_10 PF04967.12 gi|347523625|ref|YP_004781195.1| - 0.04 13.7 0.0 21 5.0 0.0 3.2 3 0 0 3 3 3 0 HTH DNA binding domain Ad_Cy_reg PF16701.5 gi|347523625|ref|YP_004781195.1| - 0.048 13.4 0.1 0.64 9.7 0.0 2.4 2 1 1 3 3 3 0 Adenylate cyclase regulatory domain GcrA PF07750.11 gi|347523625|ref|YP_004781195.1| - 0.064 13.7 0.2 12 6.2 0.1 2.2 1 1 1 2 2 2 0 GcrA cell cycle regulator Penicillinase_R PF03965.16 gi|347523625|ref|YP_004781195.1| - 0.093 13.1 0.6 2.5 8.5 0.1 3.2 2 1 2 4 4 3 0 Penicillinase repressor sCache_2 PF17200.4 gi|347523625|ref|YP_004781195.1| - 0.098 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Single Cache domain 2 GatB_Yqey PF02637.18 gi|347523625|ref|YP_004781195.1| - 0.1 12.5 0.2 2.6 7.9 0.2 2.1 1 1 0 1 1 1 0 GatB domain Glycos_trans_3N PF02885.17 gi|347523625|ref|YP_004781195.1| - 0.11 12.3 0.2 0.5 10.3 0.2 2.1 1 1 0 1 1 1 0 Glycosyl transferase family, helical bundle domain RPA_C PF08784.11 gi|347523625|ref|YP_004781195.1| - 0.14 12.8 0.0 46 4.8 0.0 2.9 3 0 0 3 3 3 0 Replication protein A C terminal Arg_decarbox_C PF17944.1 gi|347523625|ref|YP_004781195.1| - 0.2 12.2 3.3 0.76 10.4 0.1 2.8 4 0 0 4 4 2 0 Arginine decarboxylase C-terminal helical extension MerR_1 PF13411.6 gi|347523625|ref|YP_004781195.1| - 0.21 11.7 2.5 11 6.2 0.3 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein AMMECR1 PF01871.17 gi|347523626|ref|YP_004781196.1| - 5.8e-50 169.2 0.0 7e-50 168.9 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 Ribosomal_S3Ae PF01015.18 gi|347523627|ref|YP_004781197.1| - 5.8e-68 228.5 0.1 6.5e-68 228.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Thioredoxin_4 PF13462.6 gi|347523628|ref|YP_004781198.1| - 1.4e-12 48.1 0.0 2.7e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|347523628|ref|YP_004781198.1| - 0.00036 20.4 0.4 0.52 10.1 0.0 3.1 2 2 1 3 3 3 2 DSBA-like thioredoxin domain Thioredoxin PF00085.20 gi|347523628|ref|YP_004781198.1| - 0.013 15.5 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|347523628|ref|YP_004781198.1| - 0.021 15.3 0.1 1.4 9.4 0.1 3.1 2 1 0 2 2 2 0 Thioredoxin-like domain Molydop_binding PF01568.21 gi|347523628|ref|YP_004781198.1| - 0.038 14.0 0.0 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain Radical_SAM PF04055.21 gi|347523629|ref|YP_004781199.1| - 6e-20 72.3 0.0 3e-19 70.0 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|347523629|ref|YP_004781199.1| - 0.00017 20.9 2.5 0.067 12.6 0.2 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|347523629|ref|YP_004781199.1| - 0.00037 20.5 0.0 0.00037 20.5 0.0 2.3 3 0 0 3 3 3 1 Double zinc ribbon zf-ISL3 PF14690.6 gi|347523629|ref|YP_004781199.1| - 0.0085 16.7 0.7 2.8 8.7 0.0 2.7 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_Rg PF17915.1 gi|347523629|ref|YP_004781199.1| - 0.011 15.1 1.5 3.5 7.1 0.0 3.1 3 0 0 3 3 3 0 Reverse gyrase zinc finger zf-NADH-PPase PF09297.11 gi|347523629|ref|YP_004781199.1| - 0.03 14.0 0.4 2.2 8.0 0.0 2.7 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Fer4_12 PF13353.6 gi|347523629|ref|YP_004781199.1| - 0.032 14.5 0.0 0.057 13.7 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.6 gi|347523629|ref|YP_004781199.1| - 0.054 13.2 11.3 0.18 11.5 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.14 gi|347523629|ref|YP_004781199.1| - 0.082 12.9 1.2 8.5 6.5 0.0 2.7 2 0 0 2 2 2 0 Adenylate kinase, active site lid OrfB_Zn_ribbon PF07282.11 gi|347523629|ref|YP_004781199.1| - 0.1 12.6 0.5 0.4 10.6 0.5 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.19 gi|347523629|ref|YP_004781199.1| - 0.78 9.6 0.0 0.78 9.6 0.0 3.4 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF1610 PF07754.11 gi|347523629|ref|YP_004781199.1| - 2.1 8.4 8.0 0.67 10.0 1.9 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.12 gi|347523629|ref|YP_004781199.1| - 5.5 7.0 8.2 2.7 8.0 0.4 3.0 3 1 0 3 3 3 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|347523629|ref|YP_004781199.1| - 6.7 6.9 6.6 2.2 8.5 1.0 2.7 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TF_Zn_Ribbon PF08271.12 gi|347523629|ref|YP_004781199.1| - 7.1 6.2 8.9 2.1 8.0 2.2 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|347523629|ref|YP_004781199.1| - 9.4 6.4 10.2 5.7 7.1 0.1 3.6 4 0 0 4 4 3 0 Zinc ribbon domain PDDEXK_1 PF12705.7 gi|347523630|ref|YP_004781200.1| - 0.00036 20.5 0.0 0.00051 20.0 0.0 1.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|347523630|ref|YP_004781200.1| - 0.022 14.9 0.0 0.05 13.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF83 Exo5 PF09810.9 gi|347523630|ref|YP_004781200.1| - 0.089 12.3 0.0 0.21 11.0 0.0 1.5 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease ADH_N PF08240.12 gi|347523631|ref|YP_004781201.1| - 5.9e-18 64.8 0.0 1e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|347523631|ref|YP_004781201.1| - 3.6e-10 39.9 0.0 6.6e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|347523631|ref|YP_004781201.1| - 7.2e-08 32.2 0.0 1.6e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|347523631|ref|YP_004781201.1| - 0.00027 22.0 0.0 0.00051 21.1 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Pyr_redox PF00070.27 gi|347523631|ref|YP_004781201.1| - 0.0039 17.7 0.1 0.0093 16.5 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ADH_N_assoc PF13823.6 gi|347523631|ref|YP_004781201.1| - 0.0078 16.1 0.3 0.0078 16.1 0.3 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated Pyr_redox_2 PF07992.14 gi|347523631|ref|YP_004781201.1| - 0.0082 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|347523631|ref|YP_004781201.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|347523631|ref|YP_004781201.1| - 0.084 12.2 0.1 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Gp_dh_N PF00044.24 gi|347523631|ref|YP_004781201.1| - 0.091 13.1 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IlvN PF07991.12 gi|347523631|ref|YP_004781201.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|347523631|ref|YP_004781201.1| - 0.16 12.5 0.1 0.31 11.5 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Molybdopterin PF00384.22 gi|347523632|ref|YP_004781202.1| - 1e-37 130.2 0.0 8e-37 127.2 0.0 2.2 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|347523632|ref|YP_004781202.1| - 4.2e-12 46.1 0.1 9.1e-12 45.0 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|347523632|ref|YP_004781202.1| - 0.00023 20.9 0.8 0.00045 19.9 0.8 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|347523632|ref|YP_004781202.1| - 0.0017 17.7 0.1 0.003 16.8 0.1 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fer4_11 PF13247.6 gi|347523633|ref|YP_004781203.1| - 1.2e-15 57.5 14.5 1.5e-09 37.9 5.4 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347523633|ref|YP_004781203.1| - 3e-15 56.5 23.5 3.2e-07 30.9 7.4 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523633|ref|YP_004781203.1| - 5.3e-11 41.9 39.3 4.5e-07 29.4 2.0 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347523633|ref|YP_004781203.1| - 1.4e-09 37.9 21.3 0.00021 21.4 7.3 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347523633|ref|YP_004781203.1| - 2.7e-09 36.7 41.3 4.8e-06 26.4 3.6 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|347523633|ref|YP_004781203.1| - 5.8e-09 35.9 30.7 6.5e-06 26.2 9.2 3.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347523633|ref|YP_004781203.1| - 2.2e-07 31.2 19.2 0.00014 22.2 3.5 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|347523633|ref|YP_004781203.1| - 2.6e-06 27.2 11.9 0.00051 20.0 2.1 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|347523633|ref|YP_004781203.1| - 0.00016 22.3 43.9 0.069 14.1 4.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|347523633|ref|YP_004781203.1| - 0.0003 21.1 1.8 0.0003 21.1 1.8 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347523633|ref|YP_004781203.1| - 0.00031 20.8 12.8 0.001 19.2 3.6 3.6 3 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523633|ref|YP_004781203.1| - 0.00077 20.0 21.1 0.0073 16.8 4.2 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523633|ref|YP_004781203.1| - 0.0026 18.6 26.5 0.95 10.4 2.6 3.9 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|347523633|ref|YP_004781203.1| - 0.0032 18.2 17.7 0.046 14.4 0.4 3.9 4 0 0 4 4 4 2 4Fe-4S single cluster domain HIG_1_N PF04588.13 gi|347523633|ref|YP_004781203.1| - 0.062 13.5 1.0 17 5.7 0.0 2.5 2 0 0 2 2 2 0 Hypoxia induced protein conserved region ETF_QO PF05187.13 gi|347523633|ref|YP_004781203.1| - 1.8 8.7 7.2 18 5.6 3.2 2.4 2 1 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|347523633|ref|YP_004781203.1| - 6.4 7.0 18.9 8.6 6.6 0.8 3.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain NrfD PF03916.14 gi|347523634|ref|YP_004781204.1| - 1.6e-09 37.9 33.5 1.6e-09 37.9 33.5 1.8 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Chordopox_A13L PF05961.11 gi|347523634|ref|YP_004781204.1| - 1.1 9.5 3.0 2.6 8.3 0.2 2.4 2 0 0 2 2 2 0 Chordopoxvirus A13L protein PALP PF00291.25 gi|347523635|ref|YP_004781205.1| - 7.1e-48 163.5 0.5 8.7e-48 163.2 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Complex1_30kDa PF00329.19 gi|347523636|ref|YP_004781206.1| - 1.9e-34 118.9 0.1 2.3e-34 118.6 0.1 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF4911 PF16256.5 gi|347523636|ref|YP_004781206.1| - 0.024 14.6 0.2 0.48 10.4 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4911) Fer4_13 PF13370.6 gi|347523637|ref|YP_004781207.1| - 7e-21 74.5 4.2 8.5e-21 74.3 4.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|347523637|ref|YP_004781207.1| - 4.9e-18 65.6 3.1 5.5e-18 65.5 3.1 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.27 gi|347523637|ref|YP_004781207.1| - 0.0017 18.1 8.8 0.0018 18.0 1.5 2.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|347523637|ref|YP_004781207.1| - 0.0039 17.3 3.4 0.019 15.1 3.6 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347523637|ref|YP_004781207.1| - 0.023 14.8 1.5 0.023 14.8 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|347523637|ref|YP_004781207.1| - 0.033 14.3 3.3 0.11 12.7 3.3 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster CagY_M PF07337.11 gi|347523637|ref|YP_004781207.1| - 0.15 11.7 0.2 0.15 11.7 0.2 1.8 2 0 0 2 2 2 0 DC-EC Repeat Fer4_7 PF12838.7 gi|347523637|ref|YP_004781207.1| - 0.38 11.4 4.9 0.59 10.8 0.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain FHA PF00498.26 gi|347523638|ref|YP_004781208.1| - 0.018 15.4 0.0 0.045 14.1 0.0 1.7 2 0 0 2 2 2 0 FHA domain TP_methylase PF00590.20 gi|347523639|ref|YP_004781209.1| - 1.6e-22 80.5 1.1 2e-22 80.2 1.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Lactamase_B_3 PF13483.6 gi|347523640|ref|YP_004781210.1| - 3e-35 121.5 0.0 3.9e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|347523640|ref|YP_004781210.1| - 1e-19 70.8 0.0 1.5e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|347523640|ref|YP_004781210.1| - 4e-05 23.7 0.3 0.0016 18.5 0.1 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Tobravirus_2B PF05271.11 gi|347523640|ref|YP_004781210.1| - 0.099 12.6 0.0 0.23 11.4 0.0 1.5 2 0 0 2 2 2 0 Tobravirus 2B protein DHHA1 PF02272.19 gi|347523641|ref|YP_004781211.1| - 0.0028 18.1 0.7 0.0084 16.5 0.7 1.8 1 0 0 1 1 1 1 DHHA1 domain PIN_9 PF18477.1 gi|347523641|ref|YP_004781211.1| - 0.011 16.1 1.3 0.022 15.1 0.1 2.1 3 0 0 3 3 3 0 PIN like domain DHH PF01368.20 gi|347523641|ref|YP_004781211.1| - 0.019 15.2 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 DHH family CHAD PF05235.14 gi|347523641|ref|YP_004781211.1| - 0.045 13.7 1.3 0.41 10.6 0.5 2.1 2 0 0 2 2 2 0 CHAD domain Pico_P2A PF00947.19 gi|347523643|ref|YP_004781213.1| - 0.49 10.4 1.8 0.86 9.6 1.8 1.3 1 0 0 1 1 1 0 Picornavirus core protein 2A Nitro_FeMo-Co PF02579.17 gi|347523644|ref|YP_004781214.1| - 5.4e-08 33.1 0.0 7e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor MarR_2 PF12802.7 gi|347523645|ref|YP_004781215.1| - 9.6e-08 31.8 0.0 1.2e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|347523645|ref|YP_004781215.1| - 8.4e-05 22.4 0.1 0.00011 22.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|347523645|ref|YP_004781215.1| - 0.0013 18.2 0.2 0.0022 17.5 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|347523645|ref|YP_004781215.1| - 0.0016 18.4 0.2 0.0027 17.6 0.2 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|347523645|ref|YP_004781215.1| - 0.0028 17.5 0.1 0.0035 17.2 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|347523645|ref|YP_004781215.1| - 0.0029 17.9 0.1 0.0049 17.2 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|347523645|ref|YP_004781215.1| - 0.0042 17.0 0.1 0.0053 16.7 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|347523645|ref|YP_004781215.1| - 0.013 15.5 0.0 0.016 15.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|347523645|ref|YP_004781215.1| - 0.018 15.2 0.1 0.026 14.7 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|347523645|ref|YP_004781215.1| - 0.034 13.9 0.1 0.047 13.4 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|347523645|ref|YP_004781215.1| - 0.1 13.1 0.1 0.15 12.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF5055 PF16478.5 gi|347523645|ref|YP_004781215.1| - 0.1 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5055) Mrr_cat PF04471.12 gi|347523646|ref|YP_004781216.1| - 2.5e-06 27.5 0.2 4.1e-06 26.8 0.2 1.3 1 0 0 1 1 1 1 Restriction endonuclease DUF1664 PF07889.12 gi|347523647|ref|YP_004781217.1| - 5.4e-07 29.7 7.6 0.044 13.8 0.5 4.1 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) Apolipoprotein PF01442.18 gi|347523647|ref|YP_004781217.1| - 1.4e-06 28.3 8.9 1.9e-05 24.7 4.2 2.4 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|347523647|ref|YP_004781217.1| - 2.7e-06 27.5 17.6 0.05 13.7 4.4 3.6 1 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF16 PF01519.16 gi|347523647|ref|YP_004781217.1| - 3.3e-06 27.5 5.4 0.17 12.4 0.6 4.2 2 1 1 3 3 3 1 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|347523647|ref|YP_004781217.1| - 0.00017 22.0 7.2 0.13 12.7 0.8 4.3 3 1 1 4 4 4 1 Nucleopolyhedrovirus P10 protein Cob_adeno_trans PF01923.18 gi|347523647|ref|YP_004781217.1| - 0.00021 21.5 2.3 0.32 11.1 0.2 3.1 1 1 2 3 3 3 1 Cobalamin adenosyltransferase SlyX PF04102.12 gi|347523647|ref|YP_004781217.1| - 0.00035 21.1 0.4 0.094 13.4 0.1 3.9 4 0 0 4 4 4 1 SlyX ZapB PF06005.12 gi|347523647|ref|YP_004781217.1| - 0.00095 19.6 5.0 0.078 13.4 0.9 3.3 3 1 0 3 3 3 1 Cell division protein ZapB DUF2730 PF10805.8 gi|347523647|ref|YP_004781217.1| - 0.0014 18.7 6.2 0.016 15.3 0.6 4.1 1 1 1 4 4 3 1 Protein of unknown function (DUF2730) Tektin PF03148.14 gi|347523647|ref|YP_004781217.1| - 0.0016 17.3 5.3 0.36 9.5 0.1 2.8 2 1 0 3 3 3 2 Tektin family Laminin_II PF06009.12 gi|347523647|ref|YP_004781217.1| - 0.0024 17.9 13.2 0.19 11.8 2.0 3.3 2 1 1 3 3 3 1 Laminin Domain II ADIP PF11559.8 gi|347523647|ref|YP_004781217.1| - 0.0024 18.0 0.6 0.074 13.1 0.2 2.7 3 0 0 3 3 2 1 Afadin- and alpha -actinin-Binding Fez1 PF06818.15 gi|347523647|ref|YP_004781217.1| - 0.0034 17.9 2.3 0.033 14.7 0.7 2.5 1 1 1 2 2 2 1 Fez1 COG2 PF06148.11 gi|347523647|ref|YP_004781217.1| - 0.0034 17.5 12.6 4.3 7.4 0.8 4.1 2 1 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4164 PF13747.6 gi|347523647|ref|YP_004781217.1| - 0.0037 17.5 0.5 0.0037 17.5 0.5 3.5 2 1 2 4 4 3 1 Domain of unknown function (DUF4164) Spc7 PF08317.11 gi|347523647|ref|YP_004781217.1| - 0.0041 16.1 0.9 0.0041 16.1 0.9 2.3 2 1 1 3 3 2 1 Spc7 kinetochore protein RmuC PF02646.16 gi|347523647|ref|YP_004781217.1| - 0.0044 16.2 4.2 1.9 7.6 0.3 3.9 2 1 2 4 4 4 1 RmuC family FlaC_arch PF05377.11 gi|347523647|ref|YP_004781217.1| - 0.0049 17.2 11.4 0.8 10.1 1.4 4.9 4 2 1 5 5 4 2 Flagella accessory protein C (FlaC) Lipoprotein_7 PF01540.16 gi|347523647|ref|YP_004781217.1| - 0.0065 15.8 2.0 0.011 15.1 2.0 1.3 1 0 0 1 1 1 1 Adhesin lipoprotein DUF4618 PF15397.6 gi|347523647|ref|YP_004781217.1| - 0.0075 15.7 4.4 0.21 11.0 1.1 2.7 2 1 2 4 4 3 1 Domain of unknown function (DUF4618) TolA_bind_tri PF16331.5 gi|347523647|ref|YP_004781217.1| - 0.0084 16.2 0.5 0.08 13.0 0.0 2.8 4 0 0 4 4 1 1 TolA binding protein trimerisation CCDC154 PF15450.6 gi|347523647|ref|YP_004781217.1| - 0.011 14.3 3.2 0.057 12.0 1.2 2.2 2 1 0 2 2 1 0 Coiled-coil domain-containing protein 154 DUF3584 PF12128.8 gi|347523647|ref|YP_004781217.1| - 0.011 13.3 0.2 0.019 12.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Lectin_N PF03954.14 gi|347523647|ref|YP_004781217.1| - 0.012 15.4 1.6 2.8 7.7 1.5 2.9 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain Nup54 PF13874.6 gi|347523647|ref|YP_004781217.1| - 0.013 15.6 1.8 0.31 11.1 0.4 2.6 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 DUF2205 PF10224.9 gi|347523647|ref|YP_004781217.1| - 0.013 15.5 2.7 0.065 13.2 0.2 2.8 3 0 0 3 3 2 0 Short coiled-coil protein Fib_alpha PF08702.10 gi|347523647|ref|YP_004781217.1| - 0.016 15.4 2.1 0.099 12.8 0.3 2.6 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Taxilin PF09728.9 gi|347523647|ref|YP_004781217.1| - 0.02 14.1 0.4 0.037 13.2 0.1 1.5 2 0 0 2 2 1 0 Myosin-like coiled-coil protein Vip3A_N PF12495.8 gi|347523647|ref|YP_004781217.1| - 0.025 14.5 1.8 0.2 11.6 0.5 2.5 2 1 0 2 2 2 0 Vegetative insecticide protein 3A N terminal Cep57_MT_bd PF06657.13 gi|347523647|ref|YP_004781217.1| - 0.029 14.8 1.6 6.9 7.2 0.1 2.8 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4795 PF16043.5 gi|347523647|ref|YP_004781217.1| - 0.031 13.9 1.6 1.8 8.1 0.9 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) CdvA PF18822.1 gi|347523647|ref|YP_004781217.1| - 0.031 14.1 6.9 1.7 8.5 0.1 3.9 2 1 2 4 4 3 0 CdvA-like coiled-coil domain IFT57 PF10498.9 gi|347523647|ref|YP_004781217.1| - 0.032 13.2 1.9 0.74 8.7 0.7 2.5 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 APG6_N PF17675.1 gi|347523647|ref|YP_004781217.1| - 0.035 14.6 1.9 0.69 10.4 0.5 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region ABC_tran_CTD PF16326.5 gi|347523647|ref|YP_004781217.1| - 0.035 14.3 1.1 15 5.9 0.3 3.5 3 1 0 3 3 2 0 ABC transporter C-terminal domain Collagen_mid PF15984.5 gi|347523647|ref|YP_004781217.1| - 0.035 13.8 11.0 0.048 13.4 4.7 2.6 1 1 1 2 2 2 0 Bacterial collagen, middle region AAA_13 PF13166.6 gi|347523647|ref|YP_004781217.1| - 0.037 12.7 1.1 0.054 12.2 1.1 1.2 1 0 0 1 1 1 0 AAA domain APG17 PF04108.12 gi|347523647|ref|YP_004781217.1| - 0.041 13.0 4.5 0.11 11.5 3.4 2.1 1 1 0 1 1 1 0 Autophagy protein Apg17 FliJ PF02050.16 gi|347523647|ref|YP_004781217.1| - 0.042 14.1 0.6 11 6.3 0.1 3.1 2 1 0 3 3 3 0 Flagellar FliJ protein Tropomyosin PF00261.20 gi|347523647|ref|YP_004781217.1| - 0.056 12.8 9.5 0.074 12.4 1.7 2.9 2 1 1 3 3 3 0 Tropomyosin Sipho_Gp157 PF05565.11 gi|347523647|ref|YP_004781217.1| - 0.061 13.3 4.2 0.13 12.2 1.0 2.6 3 0 0 3 3 2 0 Siphovirus Gp157 HEAT_2 PF13646.6 gi|347523647|ref|YP_004781217.1| - 0.065 13.6 0.6 0.46 10.9 0.2 2.3 2 0 0 2 2 2 0 HEAT repeats DUF5082 PF16888.5 gi|347523647|ref|YP_004781217.1| - 0.067 13.5 3.8 0.15 12.4 0.5 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF5082) DASH_Duo1 PF08651.10 gi|347523647|ref|YP_004781217.1| - 0.072 12.9 3.6 3.3 7.6 0.0 3.6 3 0 0 3 3 2 0 DASH complex subunit Duo1 PTCB-BRCT PF12738.7 gi|347523647|ref|YP_004781217.1| - 0.083 12.8 0.3 12 5.9 0.1 3.0 3 0 0 3 3 2 0 twin BRCT domain Matrilin_ccoil PF10393.9 gi|347523647|ref|YP_004781217.1| - 0.09 12.7 5.1 12 5.8 0.8 3.9 3 1 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Filament PF00038.21 gi|347523647|ref|YP_004781217.1| - 0.1 12.2 3.9 1.6 8.3 2.4 2.5 2 1 0 2 2 1 0 Intermediate filament protein TPR_MLP1_2 PF07926.12 gi|347523647|ref|YP_004781217.1| - 0.11 12.6 4.7 6.3 6.9 0.5 3.2 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DivIC PF04977.15 gi|347523647|ref|YP_004781217.1| - 0.13 12.1 2.3 0.36 10.6 0.3 2.8 2 0 0 2 2 1 0 Septum formation initiator Tropomyosin_1 PF12718.7 gi|347523647|ref|YP_004781217.1| - 0.14 12.4 5.1 0.49 10.5 0.6 2.9 3 0 0 3 3 3 0 Tropomyosin like XhlA PF10779.9 gi|347523647|ref|YP_004781217.1| - 0.14 12.4 9.2 0.58 10.4 2.4 3.8 3 1 1 4 4 3 0 Haemolysin XhlA Bacillus_HBL PF05791.11 gi|347523647|ref|YP_004781217.1| - 0.14 11.9 1.6 1.3 8.8 0.4 2.3 1 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF4201 PF13870.6 gi|347523647|ref|YP_004781217.1| - 0.15 11.8 1.3 0.43 10.3 0.1 2.2 3 0 0 3 3 1 0 Domain of unknown function (DUF4201) CLZ PF16526.5 gi|347523647|ref|YP_004781217.1| - 0.15 12.5 10.0 1.1 9.7 0.3 4.2 3 1 2 6 6 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels LPP PF04728.13 gi|347523647|ref|YP_004781217.1| - 0.15 12.5 4.1 0.37 11.2 0.2 3.4 4 1 0 4 4 2 0 Lipoprotein leucine-zipper bZIP_1 PF00170.21 gi|347523647|ref|YP_004781217.1| - 0.16 12.0 2.5 0.61 10.2 0.4 2.8 3 0 0 3 3 2 0 bZIP transcription factor GAS PF13851.6 gi|347523647|ref|YP_004781217.1| - 0.17 11.3 5.5 0.57 9.5 0.4 3.3 2 1 2 4 4 4 0 Growth-arrest specific micro-tubule binding Lebercilin PF15619.6 gi|347523647|ref|YP_004781217.1| - 0.17 11.5 2.3 0.22 11.1 0.8 1.9 2 1 0 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease COG5 PF10392.9 gi|347523647|ref|YP_004781217.1| - 0.18 12.0 5.0 3.1 8.0 0.4 3.2 2 1 1 3 3 3 0 Golgi transport complex subunit 5 EzrA PF06160.12 gi|347523647|ref|YP_004781217.1| - 0.18 10.0 3.6 1.5 6.9 1.5 2.6 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA MtrG PF04210.13 gi|347523647|ref|YP_004781217.1| - 0.21 11.5 1.1 14 5.6 0.0 3.5 2 1 1 4 4 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G YscO PF07321.12 gi|347523647|ref|YP_004781217.1| - 0.21 11.5 1.9 5.4 7.0 0.1 3.0 3 0 0 3 3 3 0 Type III secretion protein YscO TMF_TATA_bd PF12325.8 gi|347523647|ref|YP_004781217.1| - 0.24 11.6 7.8 2.7 8.2 0.8 3.2 2 2 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DLP_helical PF18709.1 gi|347523647|ref|YP_004781217.1| - 0.25 10.5 3.5 1.8 7.7 0.6 2.4 1 1 1 2 2 2 0 Dynamin-like helical domain DUF2046 PF09755.9 gi|347523647|ref|YP_004781217.1| - 0.27 10.4 2.9 0.42 9.8 0.7 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein H4 (DUF2046) Nnf1 PF03980.14 gi|347523647|ref|YP_004781217.1| - 0.28 11.6 1.4 15 6.0 0.2 2.6 2 0 0 2 2 2 0 Nnf1 BLOC1_2 PF10046.9 gi|347523647|ref|YP_004781217.1| - 0.28 11.5 6.2 7.9 6.9 1.1 3.6 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc42p PF11544.8 gi|347523647|ref|YP_004781217.1| - 0.29 11.1 1.3 2.8 8.0 0.3 2.7 3 0 0 3 3 2 0 Spindle pole body component Spc42p Phasin PF05597.11 gi|347523647|ref|YP_004781217.1| - 0.32 11.0 8.5 0.21 11.6 1.1 3.1 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Vps5 PF09325.10 gi|347523647|ref|YP_004781217.1| - 0.34 10.4 5.0 7 6.1 0.4 2.9 3 0 0 3 3 3 0 Vps5 C terminal like CEP63 PF17045.5 gi|347523647|ref|YP_004781217.1| - 0.39 10.6 1.3 2 8.2 0.5 2.1 2 0 0 2 2 2 0 Centrosomal protein of 63 kDa 3-PAP PF12578.8 gi|347523647|ref|YP_004781217.1| - 0.39 10.5 0.9 27 4.5 0.0 2.7 3 0 0 3 3 2 0 Myotubularin-associated protein RasGAP_C PF03836.15 gi|347523647|ref|YP_004781217.1| - 0.4 10.8 1.5 5.1 7.3 0.1 2.7 3 1 0 3 3 2 0 RasGAP C-terminus THOC7 PF05615.13 gi|347523647|ref|YP_004781217.1| - 0.43 10.9 4.4 1.7 8.9 3.5 2.4 1 1 1 2 2 2 0 Tho complex subunit 7 YabA PF06156.13 gi|347523647|ref|YP_004781217.1| - 0.44 11.2 5.6 3.1 8.5 0.8 3.3 2 1 0 3 3 3 0 Initiation control protein YabA DUF148 PF02520.17 gi|347523647|ref|YP_004781217.1| - 0.45 10.7 2.5 11 6.2 0.0 3.7 1 1 3 4 4 3 0 Domain of unknown function DUF148 Spc24 PF08286.11 gi|347523647|ref|YP_004781217.1| - 0.46 10.7 2.0 3.3 8.0 0.1 3.0 3 1 1 4 4 3 0 Spc24 subunit of Ndc80 CENP-F_leu_zip PF10473.9 gi|347523647|ref|YP_004781217.1| - 0.49 10.4 10.2 0.14 12.1 1.1 3.2 2 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DASH_Dad2 PF08654.10 gi|347523647|ref|YP_004781217.1| - 0.5 10.8 5.2 20 5.7 0.5 3.5 2 1 1 3 3 3 0 DASH complex subunit Dad2 Prefoldin_2 PF01920.20 gi|347523647|ref|YP_004781217.1| - 0.61 10.1 4.7 9.6 6.2 0.3 3.3 3 1 1 4 4 3 0 Prefoldin subunit HrpB7 PF09486.10 gi|347523647|ref|YP_004781217.1| - 0.68 10.3 6.4 1.6 9.1 0.2 3.0 2 1 2 4 4 3 0 Bacterial type III secretion protein (HrpB7) DUF948 PF06103.11 gi|347523647|ref|YP_004781217.1| - 0.71 10.2 21.9 2.4 8.5 2.2 5.4 2 1 2 4 4 3 0 Bacterial protein of unknown function (DUF948) CCDC144C PF14915.6 gi|347523647|ref|YP_004781217.1| - 0.76 8.8 3.5 2.5 7.1 1.2 2.4 1 1 1 2 2 2 0 CCDC144C protein coiled-coil region PspA_IM30 PF04012.12 gi|347523647|ref|YP_004781217.1| - 1.1 8.8 7.3 0.27 10.8 1.5 2.4 2 1 1 3 3 2 0 PspA/IM30 family Seryl_tRNA_N PF02403.22 gi|347523647|ref|YP_004781217.1| - 1.2 9.4 6.2 1.1 9.6 0.7 2.9 2 1 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain DUF5446 PF17522.2 gi|347523647|ref|YP_004781217.1| - 1.2 9.3 5.7 2.8 8.2 0.0 3.4 3 1 1 4 4 3 0 Family of unknown function (DUF5446) Erp_C PF06780.11 gi|347523647|ref|YP_004781217.1| - 2.4 8.2 5.4 9 6.3 0.1 3.4 2 1 0 3 3 3 0 Erp protein C-terminus CCDC-167 PF15188.6 gi|347523647|ref|YP_004781217.1| - 2.4 8.6 6.0 7.2 7.0 0.8 3.7 3 1 0 3 3 2 0 Coiled-coil domain-containing protein 167 ATG16 PF08614.11 gi|347523647|ref|YP_004781217.1| - 5.9 7.1 8.6 8.3 6.6 1.8 2.9 3 1 0 3 3 2 0 Autophagy protein 16 (ATG16) NTP_transf_2 PF01909.23 gi|347523648|ref|YP_004781218.1| - 3.1e-07 30.6 0.0 4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523648|ref|YP_004781218.1| - 5.6e-07 29.6 0.0 6.6e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Kelch_4 PF13418.6 gi|347523648|ref|YP_004781218.1| - 0.084 12.9 0.0 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 Galactose oxidase, central domain DUF3928 PF13065.6 gi|347523648|ref|YP_004781218.1| - 0.089 13.6 0.0 0.11 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) HEPN PF05168.14 gi|347523649|ref|YP_004781219.1| - 4.7e-20 71.9 3.5 5.9e-20 71.6 3.5 1.1 1 0 0 1 1 1 1 HEPN domain Hydrolase PF00702.26 gi|347523650|ref|YP_004781220.1| - 3.9e-32 112.2 0.0 5.8e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|347523650|ref|YP_004781220.1| - 1e-25 90.3 0.0 1e-25 90.3 0.0 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase_3 PF08282.12 gi|347523650|ref|YP_004781220.1| - 6.3e-07 29.4 0.1 0.03 14.1 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|347523650|ref|YP_004781220.1| - 0.0019 18.6 0.3 0.0047 17.4 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|347523650|ref|YP_004781220.1| - 0.092 12.8 0.0 0.36 10.9 0.0 1.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase KBP_C PF12309.8 gi|347523650|ref|YP_004781220.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 KIF-1 binding protein C terminal Peptidase_S24 PF00717.23 gi|347523650|ref|YP_004781220.1| - 0.12 12.4 0.0 27 4.8 0.0 2.7 2 0 0 2 2 2 0 Peptidase S24-like Cytochrome_C7 PF14522.6 gi|347523651|ref|YP_004781221.1| - 4.7e-06 26.5 13.1 0.00018 21.4 1.8 2.7 1 1 1 2 2 2 2 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|347523651|ref|YP_004781221.1| - 0.0036 17.7 12.4 0.1 13.1 0.5 2.8 2 1 0 2 2 2 2 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|347523651|ref|YP_004781221.1| - 0.0061 16.3 15.5 0.15 11.8 0.1 3.8 2 1 1 3 3 3 1 Doubled CXXCH motif (Paired_CXXCH_1) dCMP_cyt_deam_1 PF00383.23 gi|347523651|ref|YP_004781221.1| - 0.04 13.8 0.1 0.082 12.8 0.1 1.5 1 0 0 1 1 1 0 Cytidine and deoxycytidylate deaminase zinc-binding region Cytochrom_NNT PF03264.14 gi|347523651|ref|YP_004781221.1| - 0.38 10.4 14.9 3.7 7.2 2.2 3.2 1 1 1 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region zf-CHY PF05495.12 gi|347523651|ref|YP_004781221.1| - 0.64 10.6 13.0 7 7.2 7.2 3.2 2 1 1 3 3 3 0 CHY zinc finger CCP_MauG PF03150.14 gi|347523651|ref|YP_004781221.1| - 0.64 10.7 7.3 30 5.2 0.0 3.9 2 1 2 4 4 4 0 Di-haem cytochrome c peroxidase Cytochrom_C552 PF02335.15 gi|347523651|ref|YP_004781221.1| - 2.9 6.7 12.2 1 8.2 4.0 2.3 1 1 2 3 3 3 0 Cytochrome c552 Endonuclease_7 PF02945.15 gi|347523651|ref|YP_004781221.1| - 3.3 7.7 6.9 6.4 6.8 0.8 2.8 3 0 0 3 3 3 0 Recombination endonuclease VII Cytochrome_C554 PF13435.6 gi|347523651|ref|YP_004781221.1| - 3.9 8.5 15.5 4.9 8.1 4.1 3.2 2 2 0 2 2 2 0 Cytochrome c554 and c-prime Fer4_11 PF13247.6 gi|347523652|ref|YP_004781222.1| - 7.9e-18 64.4 11.3 9.5e-12 44.9 6.1 3.3 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347523652|ref|YP_004781222.1| - 1.3e-15 57.7 24.4 6.8e-09 36.2 7.1 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523652|ref|YP_004781222.1| - 3e-13 49.0 38.1 2e-08 33.7 3.5 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347523652|ref|YP_004781222.1| - 1.5e-10 40.5 40.5 4.7e-06 26.4 3.3 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347523652|ref|YP_004781222.1| - 1.7e-10 40.5 41.7 1.3e-07 31.3 4.2 4.9 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347523652|ref|YP_004781222.1| - 2.9e-10 40.1 27.2 2.2e-06 27.7 5.3 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523652|ref|YP_004781222.1| - 2.4e-09 37.2 34.0 4.2e-07 30.0 8.3 4.0 4 2 0 4 4 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347523652|ref|YP_004781222.1| - 1.6e-05 25.3 26.9 0.00093 19.6 4.0 3.6 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347523652|ref|YP_004781222.1| - 1.6e-05 25.5 41.1 0.025 15.5 3.8 4.9 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|347523652|ref|YP_004781222.1| - 0.00013 22.4 30.9 0.00038 20.9 4.2 4.4 2 2 3 5 5 5 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523652|ref|YP_004781222.1| - 0.0007 20.5 33.3 0.002 19.0 7.1 4.1 3 2 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|347523652|ref|YP_004781222.1| - 0.00081 19.5 36.2 0.0032 17.6 10.9 4.1 3 3 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347523652|ref|YP_004781222.1| - 0.0035 17.7 3.1 0.0035 17.7 3.1 5.4 5 2 0 5 5 4 2 4Fe-4S binding domain DUF4485 PF14846.6 gi|347523652|ref|YP_004781222.1| - 0.0071 16.4 5.1 0.1 12.6 1.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4485) Fer4_15 PF13459.6 gi|347523652|ref|YP_004781222.1| - 0.019 15.7 1.8 0.019 15.7 1.8 4.0 5 0 0 5 5 3 0 4Fe-4S single cluster domain TAT_signal PF10518.9 gi|347523652|ref|YP_004781222.1| - 0.46 10.4 5.0 0.84 9.6 5.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_18 PF13746.6 gi|347523652|ref|YP_004781222.1| - 2.1 8.6 25.0 4.2 7.6 9.0 3.7 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|347523652|ref|YP_004781222.1| - 2.7 7.8 27.8 0.19 11.5 2.0 4.9 4 1 0 5 5 5 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NrfD PF03916.14 gi|347523653|ref|YP_004781223.1| - 1e-35 123.9 25.1 1.8e-35 123.1 25.1 1.4 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Oxidored_q2 PF00420.24 gi|347523653|ref|YP_004781223.1| - 0.12 12.0 0.2 0.12 12.0 0.2 4.3 3 2 1 4 4 4 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF588 PF04535.12 gi|347523653|ref|YP_004781223.1| - 2.8 7.7 8.0 0.2 11.4 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF588) Cytochrom_C PF00034.21 gi|347523654|ref|YP_004781224.1| - 1.1e-10 42.5 3.3 0.00012 23.2 0.2 2.7 3 0 0 3 3 2 2 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|347523654|ref|YP_004781224.1| - 6.4e-10 39.2 0.1 0.00043 20.5 0.0 2.4 2 0 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Paired_CXXCH_1 PF09699.10 gi|347523654|ref|YP_004781224.1| - 1e-05 25.1 0.0 0.15 11.8 0.0 2.4 2 0 0 2 2 2 2 Doubled CXXCH motif (Paired_CXXCH_1) Gp-FAR-1 PF05823.12 gi|347523654|ref|YP_004781224.1| - 1.9e-05 25.1 1.8 0.053 13.9 0.2 2.5 2 0 0 2 2 2 2 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF465 PF04325.13 gi|347523654|ref|YP_004781224.1| - 7e-05 22.8 0.0 0.072 13.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF465) DUF4919 PF16266.5 gi|347523654|ref|YP_004781224.1| - 8.1e-05 22.6 0.9 0.14 12.1 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4919) Cytochrom_NNT PF03264.14 gi|347523654|ref|YP_004781224.1| - 0.00019 21.2 2.1 0.18 11.5 0.0 2.6 3 0 0 3 3 2 2 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C7 PF14522.6 gi|347523654|ref|YP_004781224.1| - 0.00021 21.2 0.2 0.7 9.9 0.0 2.5 2 0 0 2 2 2 2 Cytochrome c7 and related cytochrome c DUF5343 PF17278.2 gi|347523654|ref|YP_004781224.1| - 0.0003 20.9 0.8 0.43 10.7 0.1 2.4 2 0 0 2 2 2 2 Family of unknown function (DUF5343) FixO PF02433.15 gi|347523654|ref|YP_004781224.1| - 0.00037 20.0 0.2 0.54 9.7 0.0 2.7 1 1 0 2 2 2 2 Cytochrome C oxidase, mono-heme subunit/FixO DUF2400 PF09674.10 gi|347523654|ref|YP_004781224.1| - 0.01 15.8 1.8 1.2 9.0 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) PLU-1 PF08429.11 gi|347523654|ref|YP_004781224.1| - 0.016 14.4 0.2 2.4 7.3 0.0 2.1 2 0 0 2 2 2 0 PLU-1-like protein HutP PF09021.11 gi|347523654|ref|YP_004781224.1| - 0.017 15.4 0.3 1.8 8.9 0.1 2.3 2 0 0 2 2 2 0 HutP Haem_bd PF14376.6 gi|347523654|ref|YP_004781224.1| - 0.018 15.0 3.1 1.1 9.2 0.5 2.9 1 1 1 2 2 2 0 Haem-binding domain Peripla_BP_2 PF01497.18 gi|347523654|ref|YP_004781224.1| - 0.02 14.4 0.4 5.1 6.6 0.1 2.2 1 1 0 2 2 2 0 Periplasmic binding protein DUF4366 PF14283.6 gi|347523654|ref|YP_004781224.1| - 0.026 14.6 0.1 0.072 13.1 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Cytochrome-c551 PF10643.9 gi|347523654|ref|YP_004781224.1| - 0.028 14.0 9.2 0.62 9.6 0.2 3.7 3 2 0 3 3 3 0 Photosystem P840 reaction-centre cytochrome c-551 zf-C4pol PF14260.6 gi|347523654|ref|YP_004781224.1| - 0.029 14.9 0.1 5.8 7.5 0.0 2.6 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta AJAP1_PANP_C PF15298.6 gi|347523654|ref|YP_004781224.1| - 0.033 14.4 2.0 0.058 13.6 2.0 1.4 1 0 0 1 1 1 0 AJAP1/PANP C-terminus COMMD1_N PF17221.3 gi|347523654|ref|YP_004781224.1| - 0.038 14.3 1.2 0.88 9.9 0.3 2.4 2 0 0 2 2 2 0 COMMD1 N-terminal domain Melibiase_2 PF16499.5 gi|347523654|ref|YP_004781224.1| - 0.038 13.1 0.3 1.2 8.2 0.0 2.0 2 0 0 2 2 2 0 Alpha galactosidase A Cytochrom_c3_2 PF14537.6 gi|347523654|ref|YP_004781224.1| - 0.045 14.2 0.2 16 6.0 0.1 2.5 2 0 0 2 2 2 0 Cytochrome c3 DHC_N1 PF08385.12 gi|347523654|ref|YP_004781224.1| - 0.058 12.0 0.9 2.9 6.4 0.2 2.0 2 0 0 2 2 2 0 Dynein heavy chain, N-terminal region 1 Ribo_biogen_C PF04034.13 gi|347523654|ref|YP_004781224.1| - 0.066 12.9 2.3 5.1 6.8 0.3 2.5 2 1 0 2 2 2 0 Ribosome biogenesis protein, C-terminal DUF1924 PF09086.11 gi|347523654|ref|YP_004781224.1| - 0.076 13.4 3.0 9.3 6.7 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1924) FlpD PF02662.16 gi|347523654|ref|YP_004781224.1| - 0.081 12.9 0.1 3.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit BLOC1_2 PF10046.9 gi|347523654|ref|YP_004781224.1| - 0.09 13.1 1.7 1.9 8.8 0.1 2.6 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mid2 PF04478.12 gi|347523654|ref|YP_004781224.1| - 0.096 12.5 0.3 0.21 11.4 0.3 1.5 1 0 0 1 1 1 0 Mid2 like cell wall stress sensor Occludin_ELL PF07303.13 gi|347523654|ref|YP_004781224.1| - 0.14 12.9 4.1 1.9 9.2 0.8 2.3 2 0 0 2 2 2 0 Occludin homology domain PSCyt3 PF07627.11 gi|347523654|ref|YP_004781224.1| - 0.14 12.4 1.0 20 5.6 0.0 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1588) ERp29 PF07749.12 gi|347523654|ref|YP_004781224.1| - 0.19 12.7 6.2 3.9 8.4 1.7 2.6 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain TipAS PF07739.13 gi|347523654|ref|YP_004781224.1| - 0.25 11.9 8.6 3.5 8.2 1.2 3.2 1 1 1 3 3 3 0 TipAS antibiotic-recognition domain Yippee-Mis18 PF03226.14 gi|347523654|ref|YP_004781224.1| - 0.27 11.5 1.4 12 6.2 0.0 2.5 2 1 0 3 3 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly SSP160 PF06933.11 gi|347523654|ref|YP_004781224.1| - 0.28 9.4 6.6 2.8 6.0 4.6 2.3 2 1 0 2 2 2 0 Special lobe-specific silk protein SSP160 DHOR PF06537.11 gi|347523654|ref|YP_004781224.1| - 0.35 9.5 3.8 3.8 6.0 0.3 2.2 1 1 0 2 2 2 0 Di-haem oxidoreductase, putative peroxidase Med3 PF11593.8 gi|347523654|ref|YP_004781224.1| - 0.42 9.8 5.4 0.12 11.5 1.3 1.9 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal Uteroglobin PF01099.17 gi|347523654|ref|YP_004781224.1| - 0.52 10.7 5.4 8.9 6.7 2.3 2.8 2 1 0 2 2 2 0 Uteroglobin family Ubiq-assoc PF09145.10 gi|347523654|ref|YP_004781224.1| - 0.58 10.2 3.2 5.3 7.1 0.3 2.5 2 0 0 2 2 2 0 Ubiquitin-associated Cytochrome_C554 PF13435.6 gi|347523654|ref|YP_004781224.1| - 0.72 10.8 9.9 6.4 7.8 6.4 3.2 1 1 2 3 3 2 0 Cytochrome c554 and c-prime DUF3365 PF11845.8 gi|347523654|ref|YP_004781224.1| - 1.3 9.3 7.9 6.6 7.0 0.4 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3365) TMEM154 PF15102.6 gi|347523654|ref|YP_004781224.1| - 1.6 8.7 4.2 0.56 10.1 1.2 1.8 2 0 0 2 2 1 0 TMEM154 protein family Syndecan PF01034.20 gi|347523654|ref|YP_004781224.1| - 2 8.4 9.8 0.11 12.4 2.7 2.3 2 0 0 2 2 2 0 Syndecan domain DHC PF09626.10 gi|347523654|ref|YP_004781224.1| - 2.2 9.2 5.2 36 5.3 0.5 3.2 3 1 0 3 3 3 0 Dihaem cytochrome c Ish1 PF10281.9 gi|347523654|ref|YP_004781224.1| - 2.7 8.4 5.0 17 5.8 0.3 3.3 3 1 0 3 3 2 0 Putative stress-responsive nuclear envelope protein Thioredoxin_2 PF13098.6 gi|347523654|ref|YP_004781224.1| - 3.1 8.3 8.2 3.7 8.1 0.4 2.5 2 1 0 2 2 2 0 Thioredoxin-like domain FeS_assembly_P PF01883.19 gi|347523655|ref|YP_004781225.1| - 2.4e-05 24.4 0.3 3.4e-05 23.9 0.3 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein ThiS PF02597.20 gi|347523656|ref|YP_004781226.1| - 3.9e-09 37.0 0.0 4.4e-09 36.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family YukD PF08817.10 gi|347523656|ref|YP_004781226.1| - 0.0081 16.8 0.2 0.0095 16.6 0.2 1.2 1 0 0 1 1 1 1 WXG100 protein secretion system (Wss), protein YukD ThiS-like PF14453.6 gi|347523656|ref|YP_004781226.1| - 0.032 14.3 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 ThiS-like ubiquitin PALP PF00291.25 gi|347523657|ref|YP_004781227.1| - 1.2e-48 166.0 0.0 2.9e-48 164.8 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ribosomal_L31e PF01198.19 gi|347523657|ref|YP_004781227.1| - 0.089 13.0 0.4 0.74 10.1 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein L31e Syntaxin-5_N PF11416.8 gi|347523657|ref|YP_004781227.1| - 0.13 11.5 0.0 0.25 10.6 0.0 1.5 1 0 0 1 1 1 0 Syntaxin-5 N-terminal, Sly1p-binding domain NifU PF01106.17 gi|347523658|ref|YP_004781228.1| - 0.049 13.8 0.0 0.075 13.2 0.0 1.4 1 0 0 1 1 1 0 NifU-like domain Thioredoxin_3 PF13192.6 gi|347523658|ref|YP_004781228.1| - 0.06 13.4 0.0 0.086 12.9 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain Ammonium_transp PF00909.21 gi|347523659|ref|YP_004781229.1| - 3.6e-118 394.7 33.2 4e-118 394.6 33.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|347523660|ref|YP_004781230.1| - 5.8e-34 116.7 0.8 6.6e-34 116.6 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II ABC_ATPase PF09818.9 gi|347523660|ref|YP_004781230.1| - 0.021 13.6 0.1 0.033 13.0 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class TrkA_C PF02080.21 gi|347523661|ref|YP_004781231.1| - 3.7e-22 77.9 3.5 7.4e-12 44.9 0.3 2.4 2 0 0 2 2 2 2 TrkA-C domain PhoU_div PF01865.16 gi|347523661|ref|YP_004781231.1| - 0.0098 15.2 1.8 2.4 7.5 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function DUF47 PhoU PF01895.19 gi|347523661|ref|YP_004781231.1| - 0.016 15.7 0.7 0.042 14.3 0.1 2.0 2 0 0 2 2 2 0 PhoU domain Castor_Poll_mid PF06241.12 gi|347523661|ref|YP_004781231.1| - 0.14 12.1 0.0 2.1 8.3 0.0 2.6 3 0 0 3 3 3 0 Castor and Pollux, part of voltage-gated ion channel CBS PF00571.28 gi|347523663|ref|YP_004781233.1| - 4.4e-42 142.3 12.4 1e-14 54.7 0.6 4.2 4 0 0 4 4 4 4 CBS domain Aldo_ket_red PF00248.21 gi|347523664|ref|YP_004781234.1| - 2.9e-39 135.0 0.0 3.4e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PAPS_reduct PF01507.19 gi|347523665|ref|YP_004781235.1| - 2.2e-13 50.6 0.0 3.7e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|347523665|ref|YP_004781235.1| - 0.0044 16.8 0.0 0.0068 16.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|347523665|ref|YP_004781235.1| - 0.018 14.2 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 NAD synthase HTH_3 PF01381.22 gi|347523666|ref|YP_004781236.1| - 7.2e-09 35.6 0.0 4e-08 33.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|347523666|ref|YP_004781236.1| - 6.4e-05 23.2 0.2 6.4e-05 23.2 0.2 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|347523666|ref|YP_004781236.1| - 0.00012 22.0 0.1 0.017 15.1 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|347523666|ref|YP_004781236.1| - 0.024 14.4 0.0 0.076 12.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain UPF0175 PF03683.13 gi|347523666|ref|YP_004781236.1| - 0.06 13.1 0.1 0.38 10.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) Mrr_cat PF04471.12 gi|347523666|ref|YP_004781236.1| - 0.12 12.4 0.5 0.72 9.9 0.1 2.2 2 0 0 2 2 2 0 Restriction endonuclease HTH_IclR PF09339.10 gi|347523666|ref|YP_004781236.1| - 4.9 7.0 6.3 4.6 7.1 0.1 3.4 4 0 0 4 4 4 0 IclR helix-turn-helix domain DUF1616 PF07760.11 gi|347523667|ref|YP_004781237.1| - 1.2e-33 116.8 6.9 1.5e-33 116.5 6.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) NADH-u_ox-rdase PF10785.9 gi|347523667|ref|YP_004781237.1| - 0.056 14.1 0.2 0.12 13.1 0.2 1.5 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF4395 PF14340.6 gi|347523667|ref|YP_004781237.1| - 0.28 11.5 3.3 0.76 10.1 3.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4395) Phage_holin_3_6 PF07332.11 gi|347523668|ref|YP_004781238.1| - 0.00086 19.3 5.1 0.00086 19.3 5.1 1.4 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III LMBR1 PF04791.16 gi|347523668|ref|YP_004781238.1| - 0.0064 15.5 0.0 0.0077 15.2 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein DUF2254 PF10011.9 gi|347523668|ref|YP_004781238.1| - 0.011 14.5 0.0 0.013 14.3 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF4131 PF13567.6 gi|347523668|ref|YP_004781238.1| - 0.03 14.0 0.0 0.034 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) LapA_dom PF06305.11 gi|347523668|ref|YP_004781238.1| - 0.35 10.7 10.8 0.033 14.0 5.2 2.2 1 1 1 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF4307 PF14155.6 gi|347523668|ref|YP_004781238.1| - 2.6 7.9 4.5 1.9 8.3 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) adh_short PF00106.25 gi|347523669|ref|YP_004781239.1| - 1.6e-60 203.9 0.1 2e-60 203.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|347523669|ref|YP_004781239.1| - 5.2e-56 189.8 0.9 6.8e-56 189.4 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|347523669|ref|YP_004781239.1| - 1.6e-17 64.0 0.1 2.2e-17 63.6 0.1 1.2 1 0 0 1 1 1 1 KR domain CoA_binding_2 PF13380.6 gi|347523669|ref|YP_004781239.1| - 0.012 16.0 1.2 2 9.0 0.0 2.3 2 0 0 2 2 2 0 CoA binding domain YAcAr PF10686.9 gi|347523669|ref|YP_004781239.1| - 0.015 15.2 0.2 7.4 6.6 0.1 2.9 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family HEM4 PF02602.15 gi|347523669|ref|YP_004781239.1| - 0.03 13.7 1.1 1.1 8.6 0.3 2.2 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD B12-binding PF02310.19 gi|347523669|ref|YP_004781239.1| - 0.034 14.2 0.3 0.081 13.0 0.3 1.6 1 0 0 1 1 1 0 B12 binding domain Cellulase PF00150.18 gi|347523669|ref|YP_004781239.1| - 0.15 11.5 0.0 0.18 11.2 0.0 1.1 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) RraA-like PF03737.15 gi|347523669|ref|YP_004781239.1| - 0.38 10.9 2.5 0.74 10.0 1.7 2.0 2 1 0 2 2 2 0 Aldolase/RraA DFP PF04127.15 gi|347523669|ref|YP_004781239.1| - 0.67 9.7 3.0 2.3 8.0 1.5 2.4 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein TraQ PF09679.10 gi|347523670|ref|YP_004781240.1| - 2.2 8.2 5.3 2.7 8.0 5.3 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) Band_7 PF01145.25 gi|347523671|ref|YP_004781241.1| - 4e-24 85.6 6.9 4e-24 85.6 6.9 2.3 2 1 0 2 2 2 1 SPFH domain / Band 7 family V-ATPase_G_2 PF16999.5 gi|347523671|ref|YP_004781241.1| - 0.033 14.6 15.5 0.033 14.6 15.5 2.9 2 1 1 3 3 3 0 Vacuolar (H+)-ATPase G subunit AAA_21 PF13304.6 gi|347523672|ref|YP_004781242.1| - 3e-26 93.0 0.1 1.7e-24 87.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|347523672|ref|YP_004781242.1| - 2.5e-17 63.7 0.0 2.4e-10 40.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|347523672|ref|YP_004781242.1| - 9e-08 32.9 0.0 1.1e-07 32.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|347523672|ref|YP_004781242.1| - 1.5e-05 24.5 0.1 0.00013 21.5 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|347523672|ref|YP_004781242.1| - 3e-05 22.9 0.0 0.025 13.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF2813 PF11398.8 gi|347523672|ref|YP_004781242.1| - 0.00012 21.4 0.6 0.054 12.8 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|347523672|ref|YP_004781242.1| - 0.00023 20.8 0.0 0.00043 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|347523672|ref|YP_004781242.1| - 0.0064 16.8 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347523672|ref|YP_004781242.1| - 0.022 14.5 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|347523672|ref|YP_004781242.1| - 0.026 14.9 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|347523672|ref|YP_004781242.1| - 0.028 14.9 0.8 0.064 13.8 0.1 1.9 2 0 0 2 2 2 0 ABC transporter AAA_33 PF13671.6 gi|347523672|ref|YP_004781242.1| - 0.075 13.2 0.1 0.26 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|347523672|ref|YP_004781242.1| - 0.084 12.4 0.1 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|347523672|ref|YP_004781242.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Peptidase_S8 PF00082.22 gi|347523673|ref|YP_004781243.1| - 6.6e-45 153.6 0.2 1.1e-44 152.9 0.2 1.3 1 1 0 1 1 1 1 Subtilase family DUF4479 PF14794.6 gi|347523674|ref|YP_004781244.1| - 0.00017 21.3 0.0 0.02 14.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4479) PG_binding_2 PF08823.11 gi|347523674|ref|YP_004781244.1| - 0.004 17.4 0.2 1.1 9.6 0.1 2.1 1 1 1 2 2 2 2 Putative peptidoglycan binding domain RHH_1 PF01402.21 gi|347523674|ref|YP_004781244.1| - 0.023 14.6 2.8 0.057 13.4 0.2 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Mistic PF11458.8 gi|347523674|ref|YP_004781244.1| - 0.038 14.0 0.0 0.055 13.4 0.0 1.2 1 0 0 1 1 1 0 Membrane-integrating protein Mistic HHH_5 PF14520.6 gi|347523674|ref|YP_004781244.1| - 0.065 13.9 0.1 0.089 13.4 0.1 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain CBFD_NFYB_HMF PF00808.23 gi|347523674|ref|YP_004781244.1| - 0.086 13.1 0.6 0.2 11.9 0.2 1.8 1 1 1 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone CheR_N PF03705.15 gi|347523674|ref|YP_004781244.1| - 0.12 12.1 0.0 0.32 10.8 0.0 1.7 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain SpoVR PF04293.13 gi|347523674|ref|YP_004781244.1| - 0.12 11.0 0.0 0.14 10.9 0.0 1.0 1 0 0 1 1 1 0 SpoVR like protein HEPN PF05168.14 gi|347523675|ref|YP_004781245.1| - 6.7e-18 64.9 3.3 1.4e-17 63.9 3.3 1.5 1 1 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|347523676|ref|YP_004781246.1| - 9.7e-08 32.2 0.0 1.1e-07 32.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523676|ref|YP_004781246.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase ADH_N PF08240.12 gi|347523677|ref|YP_004781247.1| - 6.9e-30 103.1 3.1 1.5e-29 102.1 3.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|347523677|ref|YP_004781247.1| - 1.7e-23 83.0 0.1 2.7e-23 82.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|347523677|ref|YP_004781247.1| - 8.8e-09 35.2 0.3 3.8e-08 33.1 0.1 1.9 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|347523677|ref|YP_004781247.1| - 3.9e-06 28.0 0.1 7e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|347523677|ref|YP_004781247.1| - 0.011 15.0 0.2 0.023 14.0 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|347523677|ref|YP_004781247.1| - 0.016 15.5 0.2 0.09 13.0 0.0 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NADH_4Fe-4S PF10589.9 gi|347523677|ref|YP_004781247.1| - 0.076 13.1 1.0 0.16 12.1 1.0 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NAD_binding_7 PF13241.6 gi|347523677|ref|YP_004781247.1| - 0.13 12.8 0.1 0.23 11.9 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrmB PF01978.19 gi|347523678|ref|YP_004781248.1| - 2.5e-23 81.7 0.3 5e-23 80.8 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|347523678|ref|YP_004781248.1| - 0.032 13.4 0.0 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB TatD_DNase PF01026.21 gi|347523679|ref|YP_004781249.1| - 8.9e-15 54.7 0.0 1.6e-14 53.9 0.0 1.4 2 0 0 2 2 2 1 TatD related DNase PTE PF02126.18 gi|347523679|ref|YP_004781249.1| - 0.0053 16.2 0.1 0.0092 15.4 0.1 1.3 1 0 0 1 1 1 1 Phosphotriesterase family Nup84_Nup100 PF04121.13 gi|347523679|ref|YP_004781249.1| - 0.25 9.4 0.0 0.29 9.2 0.0 1.1 1 0 0 1 1 1 0 Nuclear pore protein 84 / 107 DUF2250 PF10007.9 gi|347523680|ref|YP_004781250.1| - 3e-57 190.7 19.1 2.7e-28 97.9 2.0 3.7 3 1 0 3 3 3 3 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|347523680|ref|YP_004781250.1| - 1.8e-09 37.3 5.0 0.039 13.9 0.1 4.2 3 1 0 3 3 3 3 MarR family DUF4423 PF14394.6 gi|347523680|ref|YP_004781250.1| - 3.5e-08 33.3 2.1 0.0014 18.4 0.0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF4423) MarR PF01047.22 gi|347523680|ref|YP_004781250.1| - 3.2e-07 30.2 2.9 0.022 14.7 0.1 3.4 3 0 0 3 3 3 2 MarR family TrmB PF01978.19 gi|347523680|ref|YP_004781250.1| - 4.1e-07 29.8 1.7 0.037 13.9 0.0 3.8 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|347523680|ref|YP_004781250.1| - 0.00014 22.3 3.5 2.9 8.4 0.1 3.8 3 0 0 3 3 3 2 Winged helix DNA-binding domain Phage_rep_org_N PF09681.10 gi|347523680|ref|YP_004781250.1| - 0.00018 21.5 0.8 0.057 13.3 0.0 2.7 2 1 1 3 3 3 1 N-terminal phage replisome organiser (Phage_rep_org_N) Rrf2 PF02082.20 gi|347523680|ref|YP_004781250.1| - 0.00049 20.4 3.4 1.8 9.0 0.0 3.5 3 0 0 3 3 3 1 Transcriptional regulator RPA_C PF08784.11 gi|347523680|ref|YP_004781250.1| - 0.005 17.5 0.1 12 6.6 0.0 3.2 3 0 0 3 3 3 0 Replication protein A C terminal HTH_47 PF16221.5 gi|347523680|ref|YP_004781250.1| - 0.017 14.7 2.0 5.8 6.5 0.0 3.2 3 0 0 3 3 3 0 winged helix-turn-helix HTH_IclR PF09339.10 gi|347523680|ref|YP_004781250.1| - 0.019 14.8 1.0 0.019 14.8 1.0 3.2 3 0 0 3 3 3 0 IclR helix-turn-helix domain EcoR124_C PF12008.8 gi|347523680|ref|YP_004781250.1| - 0.021 14.5 0.3 0.038 13.6 0.1 1.6 2 0 0 2 2 2 0 Type I restriction and modification enzyme - subunit R C terminal HTH_36 PF13730.6 gi|347523680|ref|YP_004781250.1| - 0.053 13.5 0.2 2.1 8.4 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|347523680|ref|YP_004781250.1| - 0.054 13.5 5.1 6.1 6.9 0.0 4.0 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain Dimerisation2 PF16864.5 gi|347523680|ref|YP_004781250.1| - 0.068 13.2 4.3 1.1 9.2 0.3 3.4 4 0 0 4 4 4 0 Dimerisation domain HTH_20 PF12840.7 gi|347523680|ref|YP_004781250.1| - 1.1 9.4 5.3 8.2 6.6 0.1 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain PIN PF01850.21 gi|347523681|ref|YP_004781251.1| - 1.5e-11 44.8 0.0 1.9e-11 44.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain XhlA PF10779.9 gi|347523684|ref|YP_004781254.1| - 2.9e-08 33.8 4.3 6e-08 32.8 4.3 1.6 1 1 0 1 1 1 1 Haemolysin XhlA DUF16 PF01519.16 gi|347523684|ref|YP_004781254.1| - 1.4e-05 25.6 0.3 2.3e-05 24.8 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF16 Prefoldin_2 PF01920.20 gi|347523684|ref|YP_004781254.1| - 6.1e-05 22.9 2.0 0.00011 22.2 2.0 1.3 1 0 0 1 1 1 1 Prefoldin subunit HSBP1 PF06825.12 gi|347523684|ref|YP_004781254.1| - 0.0011 18.7 1.1 0.0022 17.8 1.1 1.5 1 0 0 1 1 1 1 Heat shock factor binding protein 1 DUF812 PF05667.11 gi|347523684|ref|YP_004781254.1| - 0.004 16.1 0.6 0.0045 15.9 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) FlaC_arch PF05377.11 gi|347523684|ref|YP_004781254.1| - 0.005 17.2 1.0 0.0093 16.3 1.0 1.5 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) CCDC53 PF10152.9 gi|347523684|ref|YP_004781254.1| - 0.0077 16.7 0.7 0.011 16.2 0.7 1.3 1 0 0 1 1 1 1 Subunit CCDC53 of WASH complex DUF1664 PF07889.12 gi|347523684|ref|YP_004781254.1| - 0.01 15.9 0.3 0.015 15.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4618 PF15397.6 gi|347523684|ref|YP_004781254.1| - 0.012 15.1 1.0 0.013 14.9 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) ABC_tran_CTD PF16326.5 gi|347523684|ref|YP_004781254.1| - 0.014 15.6 6.5 0.029 14.6 3.2 2.6 1 1 0 2 2 2 0 ABC transporter C-terminal domain Jnk-SapK_ap_N PF09744.9 gi|347523684|ref|YP_004781254.1| - 0.018 15.3 3.8 0.021 15.0 3.8 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Fib_alpha PF08702.10 gi|347523684|ref|YP_004781254.1| - 0.019 15.2 0.2 0.021 15.0 0.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Prefoldin_3 PF13758.6 gi|347523684|ref|YP_004781254.1| - 0.019 15.0 3.1 0.025 14.6 3.1 1.4 1 1 0 1 1 1 0 Prefoldin subunit Transcrip_act PF04949.13 gi|347523684|ref|YP_004781254.1| - 0.031 14.2 5.6 0.046 13.6 5.6 1.4 1 1 0 1 1 1 0 Transcriptional activator Tropomyosin PF00261.20 gi|347523684|ref|YP_004781254.1| - 0.034 13.5 10.8 0.057 12.8 7.8 2.0 1 1 1 2 2 2 0 Tropomyosin EMP24_GP25L PF01105.24 gi|347523684|ref|YP_004781254.1| - 0.038 13.9 0.1 0.041 13.8 0.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF3287 PF11690.8 gi|347523684|ref|YP_004781254.1| - 0.043 13.6 1.5 0.08 12.7 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) CHD5 PF04420.14 gi|347523684|ref|YP_004781254.1| - 0.046 13.6 0.5 0.079 12.8 0.4 1.5 1 1 0 1 1 1 0 CHD5-like protein K-box PF01486.17 gi|347523684|ref|YP_004781254.1| - 0.046 13.9 5.5 0.061 13.5 5.5 1.2 1 0 0 1 1 1 0 K-box region FapA PF03961.13 gi|347523684|ref|YP_004781254.1| - 0.049 12.3 0.5 0.054 12.1 0.5 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF2951 PF11166.8 gi|347523684|ref|YP_004781254.1| - 0.06 13.6 5.2 0.083 13.1 4.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2951) DUF3584 PF12128.8 gi|347523684|ref|YP_004781254.1| - 0.066 10.7 3.1 0.075 10.5 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FliD_C PF07195.12 gi|347523684|ref|YP_004781254.1| - 0.078 12.4 0.0 0.078 12.4 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Snapin_Pallidin PF14712.6 gi|347523684|ref|YP_004781254.1| - 0.08 13.4 4.3 0.059 13.8 2.6 1.6 2 0 0 2 2 1 0 Snapin/Pallidin DUF4988 PF16378.5 gi|347523684|ref|YP_004781254.1| - 0.086 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function Hemagglutinin PF00509.18 gi|347523684|ref|YP_004781254.1| - 0.11 10.9 0.2 0.14 10.5 0.2 1.1 1 0 0 1 1 1 0 Haemagglutinin Prominin PF05478.11 gi|347523684|ref|YP_004781254.1| - 0.11 10.4 0.0 0.1 10.5 0.0 1.0 1 0 0 1 1 1 0 Prominin DUF2207 PF09972.9 gi|347523684|ref|YP_004781254.1| - 0.11 11.2 0.1 0.11 11.2 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AAA_13 PF13166.6 gi|347523684|ref|YP_004781254.1| - 0.19 10.3 0.7 0.2 10.2 0.7 1.0 1 0 0 1 1 1 0 AAA domain 5_nucleotid PF05761.14 gi|347523684|ref|YP_004781254.1| - 0.22 10.4 0.3 0.25 10.2 0.3 1.0 1 0 0 1 1 1 0 5' nucleotidase family DUF4140 PF13600.6 gi|347523684|ref|YP_004781254.1| - 0.27 11.7 3.3 0.44 11.0 3.3 1.6 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF1515 PF07439.11 gi|347523684|ref|YP_004781254.1| - 0.27 11.3 3.5 0.42 10.7 3.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) CorA PF01544.18 gi|347523684|ref|YP_004781254.1| - 0.64 9.3 4.3 0.96 8.7 4.2 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Osmo_CC PF08946.10 gi|347523684|ref|YP_004781254.1| - 0.87 9.9 6.3 0.31 11.3 2.5 2.2 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Herpes_UL25 PF01499.16 gi|347523684|ref|YP_004781254.1| - 1.2 7.6 4.5 1.3 7.4 4.5 1.0 1 0 0 1 1 1 0 Herpesvirus UL25 family Matrilin_ccoil PF10393.9 gi|347523684|ref|YP_004781254.1| - 5.3 7.0 5.5 12 5.9 0.2 2.6 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin MazE_antitoxin PF04014.18 gi|347523686|ref|YP_004781256.1| - 6.4e-11 41.9 0.6 8.8e-11 41.5 0.6 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|347523686|ref|YP_004781256.1| - 0.02 15.3 0.0 0.027 14.9 0.0 1.2 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin UTRA PF07702.13 gi|347523686|ref|YP_004781256.1| - 0.042 13.7 0.1 0.042 13.7 0.1 1.2 1 0 0 1 1 1 0 UTRA domain PIN PF01850.21 gi|347523687|ref|YP_004781257.1| - 1.7e-05 25.3 0.0 1.7e-05 25.3 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|347523688|ref|YP_004781258.1| - 5.3e-09 36.6 0.0 5.7e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain HTH_18 PF12833.7 gi|347523688|ref|YP_004781258.1| - 0.011 16.0 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1727 PF08353.10 gi|347523688|ref|YP_004781258.1| - 0.014 15.3 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1727) TauE PF01925.19 gi|347523689|ref|YP_004781259.1| - 4.4e-26 92.0 38.0 5e-26 91.8 38.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF962 PF06127.11 gi|347523689|ref|YP_004781259.1| - 0.094 12.8 0.0 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF962) PaREP1 PF05942.11 gi|347523690|ref|YP_004781260.1| - 4.8e-29 100.6 0.4 6.1e-29 100.3 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SesA PF17107.5 gi|347523690|ref|YP_004781260.1| - 0.00023 21.3 0.0 0.12 12.5 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain on NACHT_NTPase and P-loop NTPases T3SS_needle_E PF08988.10 gi|347523690|ref|YP_004781260.1| - 0.061 13.5 0.8 0.13 12.5 0.4 1.7 1 1 0 1 1 1 0 Type III secretion system, cytoplasmic E component of needle Hs1pro-1_C PF07014.12 gi|347523690|ref|YP_004781260.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Hs1pro-1 protein C-terminus Pyr_redox_2 PF07992.14 gi|347523691|ref|YP_004781261.1| - 6.1e-45 153.7 0.3 9.5e-45 153.1 0.0 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|347523691|ref|YP_004781261.1| - 6.7e-15 55.4 2.6 4e-13 49.7 0.0 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|347523691|ref|YP_004781261.1| - 1.4e-14 54.0 3.2 4.3e-08 32.7 1.1 2.7 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox_dim PF02852.22 gi|347523691|ref|YP_004781261.1| - 2.4e-09 37.4 0.0 6.4e-09 36.0 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_oxidored PF12831.7 gi|347523691|ref|YP_004781261.1| - 4.5e-09 36.2 7.2 1.1e-06 28.3 0.5 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|347523691|ref|YP_004781261.1| - 3.4e-08 33.1 0.0 8.4e-07 28.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|347523691|ref|YP_004781261.1| - 3.6e-07 29.7 0.0 5.1e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|347523691|ref|YP_004781261.1| - 1.3e-06 28.5 5.6 0.02 15.1 0.6 2.9 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|347523691|ref|YP_004781261.1| - 1.6e-06 27.6 1.6 0.0017 17.7 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|347523691|ref|YP_004781261.1| - 4.3e-06 26.1 14.3 0.0004 19.6 2.9 3.1 2 1 1 3 3 3 2 FAD binding domain 3HCDH_N PF02737.18 gi|347523691|ref|YP_004781261.1| - 6.4e-06 26.2 1.1 0.0011 18.9 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|347523691|ref|YP_004781261.1| - 1.9e-05 23.6 7.9 0.15 10.8 0.4 3.4 4 0 0 4 4 4 2 HI0933-like protein Thi4 PF01946.17 gi|347523691|ref|YP_004781261.1| - 0.015 14.5 3.2 0.065 12.5 0.2 2.5 3 0 0 3 3 3 0 Thi4 family Amino_oxidase PF01593.24 gi|347523691|ref|YP_004781261.1| - 0.056 12.7 1.4 5.2 6.2 0.2 3.1 3 1 1 4 4 4 0 Flavin containing amine oxidoreductase DAO PF01266.24 gi|347523691|ref|YP_004781261.1| - 0.28 10.7 20.7 0.049 13.2 3.7 3.9 2 2 2 4 4 4 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|347523691|ref|YP_004781261.1| - 4.6 6.4 6.4 0.88 8.8 0.9 2.2 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 gi|347523691|ref|YP_004781261.1| - 7.3 5.5 14.7 1.2 8.1 0.9 3.8 4 0 0 4 4 4 0 Lycopene cyclase protein NTP_transf_3 PF12804.7 gi|347523692|ref|YP_004781262.1| - 7.6e-18 65.4 1.6 7.6e-18 65.4 1.6 1.7 1 1 1 2 2 2 1 MobA-like NTP transferase domain PTS_2-RNA PF01885.16 gi|347523693|ref|YP_004781263.1| - 9.7e-28 97.4 0.0 1.2e-27 97.2 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|347523693|ref|YP_004781263.1| - 0.036 13.6 0.0 0.075 12.6 0.0 1.5 2 0 0 2 2 2 0 Poly(ADP-ribose) polymerase catalytic domain RecR PF02132.15 gi|347523693|ref|YP_004781263.1| - 0.12 12.0 0.3 0.43 10.2 0.1 1.9 2 0 0 2 2 2 0 RecR protein Desulfoferrod_N PF06397.12 gi|347523693|ref|YP_004781263.1| - 0.35 10.5 2.2 1.3 8.7 2.5 1.8 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain T2SSF PF00482.23 gi|347523694|ref|YP_004781264.1| - 6e-24 84.4 1.6 2e-13 50.4 0.3 4.6 8 0 0 8 8 8 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|347523695|ref|YP_004781265.1| - 6.3e-51 173.0 0.1 1.2e-50 172.1 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|347523695|ref|YP_004781265.1| - 0.0012 19.4 0.0 0.003 18.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|347523695|ref|YP_004781265.1| - 0.003 17.3 0.1 0.0069 16.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|347523695|ref|YP_004781265.1| - 0.0041 16.8 0.6 0.0082 15.8 0.6 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|347523695|ref|YP_004781265.1| - 0.0053 17.1 0.0 0.014 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|347523695|ref|YP_004781265.1| - 0.011 15.1 1.6 0.074 12.4 0.0 2.6 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|347523695|ref|YP_004781265.1| - 0.012 15.9 0.1 0.042 14.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|347523695|ref|YP_004781265.1| - 0.014 15.1 0.1 0.034 13.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain TSNAXIP1_N PF15739.5 gi|347523695|ref|YP_004781265.1| - 0.073 13.5 1.4 0.14 12.5 1.4 1.4 1 0 0 1 1 1 0 Translin-associated factor X-interacting N-terminus Choline_kin_N PF04428.14 gi|347523695|ref|YP_004781265.1| - 0.077 12.7 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Choline kinase N terminus AAA_6 PF12774.7 gi|347523695|ref|YP_004781265.1| - 0.089 11.7 0.1 0.16 10.9 0.1 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region Viral_helicase1 PF01443.18 gi|347523695|ref|YP_004781265.1| - 0.092 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_7 PF12775.7 gi|347523695|ref|YP_004781265.1| - 0.13 11.7 0.1 0.23 10.9 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NTPase_P4 PF11602.8 gi|347523695|ref|YP_004781265.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 AAA_18 PF13238.6 gi|347523695|ref|YP_004781265.1| - 0.17 12.4 1.5 0.76 10.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain Glyco_trans_1_2 PF13524.6 gi|347523695|ref|YP_004781265.1| - 0.36 11.2 2.4 2.3 8.7 2.1 2.4 3 0 0 3 3 3 0 Glycosyl transferases group 1 AAA_28 PF13521.6 gi|347523695|ref|YP_004781265.1| - 1.1 9.5 6.4 0.83 9.9 0.2 2.5 2 0 0 2 2 2 0 AAA domain CarboxypepD_reg PF13620.6 gi|347523696|ref|YP_004781266.1| - 1.5e-49 166.2 54.2 3.7e-11 43.1 1.9 9.8 10 0 0 10 10 9 7 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|347523696|ref|YP_004781266.1| - 1.7e-19 69.5 22.7 0.00035 20.4 0.1 10.1 10 0 0 10 10 10 6 PEGA domain CarbopepD_reg_2 PF13715.6 gi|347523696|ref|YP_004781266.1| - 1.3e-16 60.3 11.7 0.0013 18.7 0.1 6.9 7 0 0 7 7 7 4 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|347523696|ref|YP_004781266.1| - 3.3e-08 33.4 16.7 8.2e-05 22.5 0.7 5.6 5 0 0 5 5 5 3 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|347523696|ref|YP_004781266.1| - 8.9e-08 32.2 1.5 0.0032 17.6 0.0 4.8 5 0 0 5 5 5 2 Macroglobulin domain MG4 DUF824 PF05688.11 gi|347523696|ref|YP_004781266.1| - 9.6e-05 22.1 5.9 0.058 13.2 0.2 4.5 4 0 0 4 4 4 2 Salmonella repeat of unknown function (DUF824) PQQ_2 PF13360.6 gi|347523696|ref|YP_004781266.1| - 0.00012 21.8 7.7 0.005 16.4 0.0 4.8 5 1 0 5 5 5 1 PQQ-like domain bMG3 PF11974.8 gi|347523696|ref|YP_004781266.1| - 0.00012 22.0 0.2 7.8 6.6 0.0 4.4 4 0 0 4 4 4 1 Bacterial alpha-2-macroglobulin MG3 domain bMG6 PF17962.1 gi|347523696|ref|YP_004781266.1| - 0.00023 21.3 7.9 5.5 7.2 0.0 5.9 6 0 0 6 6 5 1 Bacterial macroglobulin domain 6 PQQ PF01011.21 gi|347523696|ref|YP_004781266.1| - 0.0036 17.2 4.5 0.58 10.2 0.0 4.7 6 0 0 6 6 4 1 PQQ enzyme repeat SpaA PF17802.1 gi|347523696|ref|YP_004781266.1| - 0.021 15.1 0.4 0.021 15.1 0.4 6.7 5 3 0 5 5 5 0 Prealbumin-like fold domain Glyco_hydro2_C5 PF18565.1 gi|347523696|ref|YP_004781266.1| - 0.029 14.2 0.2 0.78 9.6 0.0 3.6 5 0 0 5 5 5 0 Glycoside hydrolase family 2 C-terminal domain 5 FlgD_ig PF13860.6 gi|347523696|ref|YP_004781266.1| - 0.047 13.6 3.9 14 5.6 0.0 5.1 4 0 0 4 4 4 0 FlgD Ig-like domain DUF1533 PF07550.11 gi|347523696|ref|YP_004781266.1| - 0.066 13.1 0.1 6.7 6.7 0.0 3.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1533) DUF4399 PF14347.6 gi|347523696|ref|YP_004781266.1| - 0.079 13.3 0.1 23 5.4 0.0 4.0 4 1 0 4 4 2 0 Domain of unknown function (DUF4399) Invasin_D3 PF09134.10 gi|347523696|ref|YP_004781266.1| - 0.15 12.4 33.8 0.072 13.4 1.0 8.0 7 2 2 9 9 8 0 Invasin, domain 3 YtkA PF13115.6 gi|347523696|ref|YP_004781266.1| - 0.18 12.4 1.3 36 5.0 0.0 3.7 3 0 0 3 3 2 0 YtkA-like AMIN PF11741.8 gi|347523696|ref|YP_004781266.1| - 0.54 10.4 3.2 1 9.6 0.2 3.0 3 0 0 3 3 2 0 AMIN domain fn3_3 PF14686.6 gi|347523696|ref|YP_004781266.1| - 1.9 8.3 21.0 0.15 11.9 0.1 5.6 6 0 0 6 6 6 0 Polysaccharide lyase family 4, domain II Pkinase PF00069.25 gi|347523700|ref|YP_004781270.1| - 3e-17 62.8 0.0 4e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|347523700|ref|YP_004781270.1| - 0.0019 18.1 0.0 0.013 15.5 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|347523700|ref|YP_004781270.1| - 0.0075 15.9 0.0 0.026 14.1 0.0 1.7 1 1 0 2 2 2 1 Choline/ethanolamine kinase PP2C_2 PF13672.6 gi|347523701|ref|YP_004781271.1| - 3.9e-09 36.4 0.0 5.7e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|347523701|ref|YP_004781271.1| - 2.8e-06 27.1 0.0 0.015 15.0 0.0 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 gi|347523701|ref|YP_004781271.1| - 0.00051 20.0 0.1 0.0011 18.9 0.1 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) SeqA_N PF17206.3 gi|347523701|ref|YP_004781271.1| - 0.011 15.0 0.2 0.023 14.0 0.2 1.4 1 0 0 1 1 1 0 SeqA protein N-terminal domain DctQ PF04290.12 gi|347523702|ref|YP_004781272.1| - 0.027 14.4 1.1 0.037 14.0 1.1 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component HemN_C PF06969.16 gi|347523702|ref|YP_004781272.1| - 0.035 14.2 0.6 0.056 13.5 0.6 1.3 1 0 0 1 1 1 0 HemN C-terminal domain DZR PF12773.7 gi|347523703|ref|YP_004781273.1| - 1.4e-06 28.2 0.9 2.3e-06 27.5 0.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|347523703|ref|YP_004781273.1| - 3.1e-06 26.7 2.9 5.1e-06 26.0 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain FHA PF00498.26 gi|347523703|ref|YP_004781273.1| - 0.00012 22.3 0.0 0.00024 21.4 0.0 1.4 1 0 0 1 1 1 1 FHA domain zf-ribbon_3 PF13248.6 gi|347523703|ref|YP_004781273.1| - 0.00014 21.1 3.4 0.00014 21.1 3.4 1.7 2 0 0 2 2 2 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|347523703|ref|YP_004781273.1| - 0.0012 18.1 0.6 0.0019 17.5 0.6 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-tcix PF14952.6 gi|347523703|ref|YP_004781273.1| - 0.026 14.1 3.3 0.046 13.3 3.3 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Nudix_N_2 PF14803.6 gi|347523703|ref|YP_004781273.1| - 0.044 13.7 2.1 6.7 6.7 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|347523703|ref|YP_004781273.1| - 0.045 13.7 1.9 0.096 12.6 0.6 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|347523703|ref|YP_004781273.1| - 0.049 13.3 2.6 0.42 10.3 0.1 2.5 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit YhfH PF14149.6 gi|347523703|ref|YP_004781273.1| - 0.1 12.6 0.3 16 5.6 0.0 2.3 2 0 0 2 2 2 0 YhfH-like protein DUF2116 PF09889.9 gi|347523703|ref|YP_004781273.1| - 0.13 12.3 0.1 0.22 11.5 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2318 PF10080.9 gi|347523703|ref|YP_004781273.1| - 0.13 12.4 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF35_N PF12172.8 gi|347523703|ref|YP_004781273.1| - 0.14 12.1 2.4 0.25 11.2 2.4 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_15 PF17032.5 gi|347523703|ref|YP_004781273.1| - 0.19 12.5 1.9 0.32 11.8 1.9 1.3 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|347523704|ref|YP_004781274.1| - 8.5e-08 31.7 4.1 1.3e-07 31.1 4.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|347523704|ref|YP_004781274.1| - 1.9e-05 24.6 2.9 3e-05 24.0 2.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|347523704|ref|YP_004781274.1| - 0.0002 20.6 3.4 0.00033 19.9 3.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|347523704|ref|YP_004781274.1| - 0.0015 19.2 0.3 0.0022 18.7 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbon family SARAF PF06682.12 gi|347523704|ref|YP_004781274.1| - 0.016 14.9 0.1 0.017 14.8 0.1 1.2 1 0 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis Nudix_N_2 PF14803.6 gi|347523704|ref|YP_004781274.1| - 0.075 13.0 4.1 0.41 10.6 0.5 2.3 2 0 0 2 2 2 0 Nudix N-terminal DHHC PF01529.20 gi|347523704|ref|YP_004781274.1| - 0.092 12.8 2.7 0.31 11.1 0.3 2.0 2 0 0 2 2 2 0 DHHC palmitoyltransferase zf-RanBP PF00641.18 gi|347523704|ref|YP_004781274.1| - 0.41 10.0 2.8 0.63 9.4 2.8 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others RecR PF02132.15 gi|347523704|ref|YP_004781274.1| - 0.63 9.7 4.1 6.2 6.5 0.2 2.1 1 1 1 2 2 2 0 RecR protein zf-RRN7 PF11781.8 gi|347523704|ref|YP_004781274.1| - 3.6 7.4 7.2 7.4 6.4 1.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_C2H2_13 PF18508.1 gi|347523704|ref|YP_004781274.1| - 7.2 6.3 8.0 4 7.1 0.7 2.2 1 1 1 2 2 2 0 Zinc finger domain zf-NADH-PPase PF09297.11 gi|347523704|ref|YP_004781274.1| - 9.8 5.9 8.7 7.5 6.3 1.2 2.8 2 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain FAM153 PF15722.5 gi|347523705|ref|YP_004781275.1| - 0.0036 17.6 0.0 0.0074 16.6 0.0 1.4 1 0 0 1 1 1 1 FAM153 family Pkinase PF00069.25 gi|347523706|ref|YP_004781276.1| - 6.5e-23 81.4 0.0 1.1e-22 80.6 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain FHA PF00498.26 gi|347523706|ref|YP_004781276.1| - 8e-11 42.1 0.0 1.5e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 FHA domain Pkinase_Tyr PF07714.17 gi|347523706|ref|YP_004781276.1| - 3.7e-09 36.3 0.0 5.7e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|347523706|ref|YP_004781276.1| - 0.012 14.9 0.0 1.1 8.5 0.0 2.5 2 1 0 2 2 2 0 Kinase-like APH PF01636.23 gi|347523706|ref|YP_004781276.1| - 0.042 13.8 0.3 0.25 11.2 0.0 2.3 1 1 2 3 3 3 0 Phosphotransferase enzyme family STAT2_C PF12188.8 gi|347523706|ref|YP_004781276.1| - 0.076 13.0 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Signal transducer and activator of transcription 2 C terminal Ribosomal_S17e PF00833.18 gi|347523707|ref|YP_004781277.1| - 0.045 13.7 0.3 0.074 13.0 0.3 1.3 1 0 0 1 1 1 0 Ribosomal S17 AAA PF00004.29 gi|347523707|ref|YP_004781277.1| - 0.081 13.3 0.0 0.18 12.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|347523707|ref|YP_004781277.1| - 0.082 12.9 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF4234 PF14018.6 gi|347523708|ref|YP_004781278.1| - 0.00029 20.9 0.1 0.00029 20.9 0.1 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) DUF2232 PF09991.9 gi|347523708|ref|YP_004781278.1| - 0.0018 17.5 1.3 0.013 14.7 0.5 2.4 1 1 2 3 3 3 1 Predicted membrane protein (DUF2232) DUF1129 PF06570.11 gi|347523708|ref|YP_004781278.1| - 0.024 14.1 0.9 1.2 8.6 0.7 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) DUF4342 PF14242.6 gi|347523708|ref|YP_004781278.1| - 0.12 12.4 0.1 0.12 12.4 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4342) EI24 PF07264.11 gi|347523708|ref|YP_004781278.1| - 0.34 11.2 15.2 5.4 7.2 13.1 2.6 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF334 PF03904.13 gi|347523708|ref|YP_004781278.1| - 0.92 9.0 3.7 1.8 8.1 3.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF334) DUF2070 PF09843.9 gi|347523708|ref|YP_004781278.1| - 2.5 6.3 9.8 31 2.7 9.8 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4064 PF13273.6 gi|347523708|ref|YP_004781278.1| - 5.9 7.2 12.7 9 6.6 5.3 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) DUF3782 PF12644.7 gi|347523709|ref|YP_004781279.1| - 9.5e-26 89.8 1.5 9.5e-26 89.8 1.5 2.5 3 0 0 3 3 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|347523709|ref|YP_004781279.1| - 2.9e-15 55.9 2.1 6.1e-15 54.9 2.1 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily AAA_13 PF13166.6 gi|347523709|ref|YP_004781279.1| - 1e-05 24.5 0.8 1.3e-05 24.1 0.8 1.1 1 0 0 1 1 1 1 AAA domain DUF16 PF01519.16 gi|347523709|ref|YP_004781279.1| - 2e-05 25.0 5.5 2e-05 25.0 5.5 1.8 2 0 0 2 2 1 1 Protein of unknown function DUF16 ATG16 PF08614.11 gi|347523709|ref|YP_004781279.1| - 6.6e-05 23.2 8.8 9.9e-05 22.7 8.8 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) BRE1 PF08647.11 gi|347523709|ref|YP_004781279.1| - 7.1e-05 22.8 2.5 0.00012 22.1 2.5 1.3 1 0 0 1 1 1 1 BRE1 E3 ubiquitin ligase IFT57 PF10498.9 gi|347523709|ref|YP_004781279.1| - 0.00013 21.0 1.8 0.0002 20.5 1.8 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 TolA_bind_tri PF16331.5 gi|347523709|ref|YP_004781279.1| - 0.00016 21.6 9.2 0.00027 21.0 9.2 1.3 1 0 0 1 1 1 1 TolA binding protein trimerisation EzrA PF06160.12 gi|347523709|ref|YP_004781279.1| - 0.0002 19.7 0.6 0.00024 19.4 0.6 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA SlyX PF04102.12 gi|347523709|ref|YP_004781279.1| - 0.00031 21.3 12.1 0.066 13.8 0.2 2.4 1 1 1 2 2 2 2 SlyX DUF2383 PF09537.10 gi|347523709|ref|YP_004781279.1| - 0.00044 20.6 5.3 0.078 13.3 0.1 2.9 2 1 1 3 3 2 1 Domain of unknown function (DUF2383) Fib_alpha PF08702.10 gi|347523709|ref|YP_004781279.1| - 0.00046 20.4 2.9 0.00094 19.4 2.9 1.6 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|347523709|ref|YP_004781279.1| - 0.0009 18.2 3.8 0.0012 17.8 3.8 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein Lebercilin PF15619.6 gi|347523709|ref|YP_004781279.1| - 0.0014 18.4 4.9 0.0022 17.7 4.9 1.2 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Tropomyosin PF00261.20 gi|347523709|ref|YP_004781279.1| - 0.0021 17.5 8.5 0.003 17.0 8.5 1.2 1 0 0 1 1 1 1 Tropomyosin GCN5L1 PF06320.13 gi|347523709|ref|YP_004781279.1| - 0.0026 17.9 1.2 0.005 17.0 1.2 1.4 1 0 0 1 1 1 1 GCN5-like protein 1 (GCN5L1) Laminin_II PF06009.12 gi|347523709|ref|YP_004781279.1| - 0.0026 17.8 0.7 0.0041 17.2 0.7 1.3 1 0 0 1 1 1 1 Laminin Domain II DUF4349 PF14257.6 gi|347523709|ref|YP_004781279.1| - 0.0028 17.1 2.3 0.0052 16.3 2.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DUF724 PF05266.14 gi|347523709|ref|YP_004781279.1| - 0.0031 17.4 2.1 0.0052 16.6 2.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF724) ZapB PF06005.12 gi|347523709|ref|YP_004781279.1| - 0.0039 17.6 9.3 0.0088 16.5 9.3 1.5 1 0 0 1 1 1 1 Cell division protein ZapB Helo_like_N PF17111.5 gi|347523709|ref|YP_004781279.1| - 0.0054 16.1 1.4 0.0083 15.5 1.4 1.3 1 0 0 1 1 1 1 Fungal N-terminal domain of STAND proteins XhlA PF10779.9 gi|347523709|ref|YP_004781279.1| - 0.0062 16.7 7.2 0.0091 16.2 5.6 2.0 1 1 1 2 2 2 2 Haemolysin XhlA DUF1664 PF07889.12 gi|347523709|ref|YP_004781279.1| - 0.0068 16.4 3.2 0.011 15.8 3.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF812 PF05667.11 gi|347523709|ref|YP_004781279.1| - 0.0073 15.3 1.1 0.0092 14.9 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ADIP PF11559.8 gi|347523709|ref|YP_004781279.1| - 0.0073 16.4 4.1 0.012 15.7 4.1 1.3 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding FemAB PF02388.16 gi|347523709|ref|YP_004781279.1| - 0.0096 14.8 0.3 0.014 14.3 0.3 1.2 1 0 0 1 1 1 1 FemAB family DUF2408 PF10303.9 gi|347523709|ref|YP_004781279.1| - 0.01 16.4 2.9 0.019 15.5 2.5 1.6 2 0 0 2 2 1 1 Protein of unknown function (DUF2408) FapA PF03961.13 gi|347523709|ref|YP_004781279.1| - 0.011 14.4 0.6 0.016 13.8 0.6 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A MPS2 PF17060.5 gi|347523709|ref|YP_004781279.1| - 0.011 15.0 2.7 0.018 14.4 2.7 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 CorA PF01544.18 gi|347523709|ref|YP_004781279.1| - 0.011 15.1 3.4 0.016 14.5 3.4 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein KxDL PF10241.9 gi|347523709|ref|YP_004781279.1| - 0.011 16.0 3.2 0.098 13.0 0.9 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein NPV_P10 PF05531.12 gi|347523709|ref|YP_004781279.1| - 0.012 16.1 0.8 0.03 14.8 0.7 1.7 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CENP-K PF11802.8 gi|347523709|ref|YP_004781279.1| - 0.012 15.2 2.0 0.016 14.8 2.0 1.2 1 0 0 1 1 1 0 Centromere-associated protein K DUF3972 PF13118.6 gi|347523709|ref|YP_004781279.1| - 0.016 15.6 2.5 0.033 14.6 2.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3972) PTRF_SDPR PF15237.6 gi|347523709|ref|YP_004781279.1| - 0.016 14.8 2.4 0.024 14.3 2.4 1.2 1 0 0 1 1 1 0 PTRF/SDPR family COG5 PF10392.9 gi|347523709|ref|YP_004781279.1| - 0.018 15.2 2.4 0.031 14.4 2.4 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 DUF677 PF05055.12 gi|347523709|ref|YP_004781279.1| - 0.022 13.7 1.4 0.11 11.4 2.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF677) FmiP_Thoc5 PF09766.9 gi|347523709|ref|YP_004781279.1| - 0.023 14.0 1.9 0.037 13.3 1.9 1.3 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 DUF948 PF06103.11 gi|347523709|ref|YP_004781279.1| - 0.025 14.8 0.3 0.039 14.2 0.3 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) HAP1_N PF04849.13 gi|347523709|ref|YP_004781279.1| - 0.025 13.8 6.1 0.035 13.3 6.1 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Hydantoinase_B PF02538.14 gi|347523709|ref|YP_004781279.1| - 0.026 13.0 1.0 0.033 12.6 1.0 1.1 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase Hrs_helical PF12210.8 gi|347523709|ref|YP_004781279.1| - 0.028 15.0 2.8 0.052 14.1 2.8 1.6 1 0 0 1 1 1 0 Hepatocyte growth factor-regulated tyrosine kinase substrate ERM PF00769.19 gi|347523709|ref|YP_004781279.1| - 0.029 14.2 9.7 0.044 13.6 9.7 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fmp27_WPPW PF10359.9 gi|347523709|ref|YP_004781279.1| - 0.03 13.2 2.3 0.04 12.8 2.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain HAUS-augmin3 PF14932.6 gi|347523709|ref|YP_004781279.1| - 0.033 13.8 2.8 0.046 13.3 2.8 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF641 PF04859.12 gi|347523709|ref|YP_004781279.1| - 0.034 14.5 3.1 0.059 13.7 3.1 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Exonuc_VII_L PF02601.15 gi|347523709|ref|YP_004781279.1| - 0.035 13.7 1.0 0.042 13.4 1.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit P66_CC PF16563.5 gi|347523709|ref|YP_004781279.1| - 0.036 13.7 5.7 0.11 12.1 0.4 2.8 2 0 0 2 2 2 0 Coiled-coil and interaction region of P66A and P66B with MBD2 BAR_3_WASP_bdg PF10456.9 gi|347523709|ref|YP_004781279.1| - 0.036 13.5 0.1 0.057 12.9 0.1 1.4 1 1 0 1 1 1 0 WASP-binding domain of Sorting nexin protein Zw10 PF06248.13 gi|347523709|ref|YP_004781279.1| - 0.037 12.6 0.8 0.05 12.2 0.8 1.2 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 DUF4754 PF15946.5 gi|347523709|ref|YP_004781279.1| - 0.04 14.2 0.3 2.5 8.4 0.0 3.2 4 0 0 4 4 2 0 Domain of unknown function (DUF4754) DUF4795 PF16043.5 gi|347523709|ref|YP_004781279.1| - 0.043 13.4 1.6 0.065 12.8 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) AATF-Che1 PF13339.6 gi|347523709|ref|YP_004781279.1| - 0.065 13.9 1.1 0.15 12.7 1.2 1.6 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor USP8_interact PF08941.10 gi|347523709|ref|YP_004781279.1| - 0.084 12.7 1.3 0.16 11.7 1.3 1.5 1 0 0 1 1 1 0 USP8 interacting TMEM70 PF06979.12 gi|347523709|ref|YP_004781279.1| - 0.087 13.2 0.1 0.13 12.7 0.1 1.2 1 0 0 1 1 1 0 Assembly, mitochondrial proton-transport ATP synth complex GHMP_kinases_C PF08544.13 gi|347523709|ref|YP_004781279.1| - 0.09 13.2 0.5 0.36 11.2 0.5 2.2 1 1 0 1 1 1 0 GHMP kinases C terminal SKA2 PF16740.5 gi|347523709|ref|YP_004781279.1| - 0.097 12.5 6.9 1.5 8.6 6.9 2.2 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 2 APG6_N PF17675.1 gi|347523709|ref|YP_004781279.1| - 0.1 13.1 7.1 0.16 12.5 7.1 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region Prefoldin PF02996.17 gi|347523709|ref|YP_004781279.1| - 0.13 12.2 4.3 0.18 11.7 3.2 1.8 1 1 1 2 2 2 0 Prefoldin subunit Atg14 PF10186.9 gi|347523709|ref|YP_004781279.1| - 0.14 11.2 2.4 0.16 11.0 2.4 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIC PF04977.15 gi|347523709|ref|YP_004781279.1| - 0.16 11.8 6.8 0.24 11.2 5.7 1.9 1 1 1 2 2 2 0 Septum formation initiator FlxA PF14282.6 gi|347523709|ref|YP_004781279.1| - 0.16 12.0 5.1 0.66 10.0 5.8 1.6 1 1 0 1 1 1 0 FlxA-like protein DUF3138 PF11336.8 gi|347523709|ref|YP_004781279.1| - 0.17 10.4 0.1 0.23 10.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Prefoldin_2 PF01920.20 gi|347523709|ref|YP_004781279.1| - 0.18 11.8 7.8 0.49 10.4 7.8 1.8 1 1 0 1 1 1 0 Prefoldin subunit GrpE PF01025.19 gi|347523709|ref|YP_004781279.1| - 0.18 11.5 4.1 0.31 10.7 4.1 1.4 1 0 0 1 1 1 0 GrpE LPP PF04728.13 gi|347523709|ref|YP_004781279.1| - 0.19 12.2 1.6 0.39 11.1 1.6 1.5 1 0 0 1 1 1 0 Lipoprotein leucine-zipper Sec2p PF06428.11 gi|347523709|ref|YP_004781279.1| - 0.19 11.7 6.4 0.35 10.8 5.0 1.9 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p ABC_tran_CTD PF16326.5 gi|347523709|ref|YP_004781279.1| - 0.33 11.2 9.1 5.4 7.3 9.0 2.4 1 1 1 2 2 2 0 ABC transporter C-terminal domain Csm1_N PF18504.1 gi|347523709|ref|YP_004781279.1| - 0.34 11.3 7.0 2.1 8.8 7.5 2.1 1 1 1 2 2 2 0 Csm1 N-terminal domain DUF4763 PF15960.5 gi|347523709|ref|YP_004781279.1| - 0.4 10.0 8.7 1.3 8.3 8.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) DUF3450 PF11932.8 gi|347523709|ref|YP_004781279.1| - 0.4 9.9 7.4 0.71 9.1 7.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Spc29 PF17082.5 gi|347523709|ref|YP_004781279.1| - 0.4 10.5 1.7 0.6 9.9 1.7 1.3 1 0 0 1 1 1 0 Spindle Pole Component 29 FUSC PF04632.12 gi|347523709|ref|YP_004781279.1| - 0.95 7.9 6.0 1.1 7.7 6.0 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Spc24 PF08286.11 gi|347523709|ref|YP_004781279.1| - 1.1 9.5 5.3 2.1 8.6 5.3 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 COG2 PF06148.11 gi|347523709|ref|YP_004781279.1| - 1.6 8.8 5.8 3.6 7.7 5.8 1.6 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 YabA PF06156.13 gi|347523709|ref|YP_004781279.1| - 1.7 9.3 5.2 4 8.1 5.2 1.7 1 1 0 1 1 1 0 Initiation control protein YabA DUF4140 PF13600.6 gi|347523709|ref|YP_004781279.1| - 3.2 8.3 7.8 69 4.0 7.9 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) SAC3 PF12209.8 gi|347523709|ref|YP_004781279.1| - 6.8 6.9 8.6 1.1 9.5 2.2 2.5 2 1 1 3 3 2 0 Leucine permease transcriptional regulator helical domain UPF0175 PF03683.13 gi|347523710|ref|YP_004781280.1| - 3.9e-24 84.2 0.1 4.5e-24 84.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) PIN PF01850.21 gi|347523712|ref|YP_004781282.1| - 3.4e-05 24.3 0.0 0.00015 22.3 0.0 1.9 1 1 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|347523712|ref|YP_004781282.1| - 0.031 15.0 0.1 0.95 10.2 0.0 2.0 2 0 0 2 2 2 0 PIN domain DUF1314 PF07013.11 gi|347523712|ref|YP_004781282.1| - 0.12 12.2 0.1 0.98 9.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1314) MazE_antitoxin PF04014.18 gi|347523716|ref|YP_004781286.1| - 6.1e-09 35.6 0.0 9.4e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PepSY PF03413.19 gi|347523718|ref|YP_004781288.1| - 0.0067 17.0 0.0 0.0097 16.4 0.0 1.3 1 1 0 1 1 1 1 Peptidase propeptide and YPEB domain MazE_antitoxin PF04014.18 gi|347523720|ref|YP_004781290.1| - 4.1e-07 29.8 2.6 9.9e-07 28.6 2.6 1.7 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|347523720|ref|YP_004781290.1| - 0.00065 19.6 0.1 0.00087 19.2 0.1 1.3 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like PIN PF01850.21 gi|347523721|ref|YP_004781291.1| - 2.3e-12 47.5 0.5 2.8e-12 47.2 0.5 1.1 1 0 0 1 1 1 1 PIN domain DUF433 PF04255.14 gi|347523722|ref|YP_004781292.1| - 1.7e-23 82.2 0.0 2.7e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Sigma70_r3 PF04539.16 gi|347523722|ref|YP_004781292.1| - 0.019 15.0 0.2 0.032 14.3 0.2 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 GerE PF00196.19 gi|347523722|ref|YP_004781292.1| - 0.028 13.9 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF5615 PF18480.1 gi|347523723|ref|YP_004781293.1| - 0.19 11.5 0.0 0.2 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) GIT_SHD PF08518.11 gi|347523723|ref|YP_004781293.1| - 0.19 11.4 0.1 0.19 11.4 0.1 1.9 3 0 0 3 3 3 0 Spa2 homology domain (SHD) of GIT RNA_pol_Rpb1_6 PF04992.14 gi|347523725|ref|YP_004781295.1| - 0.14 12.0 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 6 AAA_5 PF07728.14 gi|347523731|ref|YP_004781301.1| - 5.1e-18 65.4 0.0 4e-17 62.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|347523731|ref|YP_004781301.1| - 8.5e-07 29.5 0.0 6e-06 26.7 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|347523731|ref|YP_004781301.1| - 0.0002 20.8 0.0 0.00041 19.8 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|347523731|ref|YP_004781301.1| - 0.00043 20.1 0.0 0.048 13.5 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|347523731|ref|YP_004781301.1| - 0.0015 18.3 0.6 0.0028 17.4 0.2 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|347523731|ref|YP_004781301.1| - 0.0027 18.1 0.3 0.031 14.6 0.1 2.4 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|347523731|ref|YP_004781301.1| - 0.0029 17.4 0.0 0.0087 15.8 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|347523731|ref|YP_004781301.1| - 0.0047 17.2 0.1 0.049 13.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|347523731|ref|YP_004781301.1| - 0.01 15.5 0.2 0.023 14.3 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|347523731|ref|YP_004781301.1| - 0.032 13.7 0.0 0.089 12.3 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region PhoH PF02562.16 gi|347523731|ref|YP_004781301.1| - 0.043 13.3 0.0 0.089 12.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|347523731|ref|YP_004781301.1| - 0.045 13.9 0.0 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|347523731|ref|YP_004781301.1| - 0.054 13.2 0.0 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|347523731|ref|YP_004781301.1| - 0.091 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|347523731|ref|YP_004781301.1| - 0.12 12.7 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|347523731|ref|YP_004781301.1| - 0.18 12.2 0.1 0.46 10.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|347523731|ref|YP_004781301.1| - 0.2 11.3 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cation_efflux PF01545.21 gi|347523733|ref|YP_004781303.1| - 2.7e-12 46.8 9.3 3.4e-12 46.5 9.3 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|347523733|ref|YP_004781303.1| - 1.4e-08 34.7 0.0 2.4e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MARVEL PF01284.23 gi|347523733|ref|YP_004781303.1| - 3 7.9 9.4 0.43 10.6 4.5 1.9 1 1 0 2 2 2 0 Membrane-associating domain RuvA_C PF07499.13 gi|347523735|ref|YP_004781305.1| - 0.048 14.1 0.3 0.048 14.1 0.3 1.9 2 0 0 2 2 2 0 RuvA, C-terminal domain DUF3782 PF12644.7 gi|347523737|ref|YP_004781307.1| - 2.1e-25 88.7 19.2 2.8e-25 88.3 1.6 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|347523737|ref|YP_004781307.1| - 2.7e-15 56.0 3.1 2.7e-15 56.0 3.1 2.0 2 0 0 2 2 1 1 PD-(D/E)XK nuclease superfamily AAA_13 PF13166.6 gi|347523737|ref|YP_004781307.1| - 1.2e-08 34.2 6.3 2.7e-08 33.0 6.3 1.5 1 0 0 1 1 1 1 AAA domain SlyX PF04102.12 gi|347523737|ref|YP_004781307.1| - 1.4e-06 28.8 24.1 0.0077 16.8 16.6 3.1 1 1 1 2 2 2 2 SlyX DUF16 PF01519.16 gi|347523737|ref|YP_004781307.1| - 4e-06 27.3 20.2 0.00073 20.0 11.2 3.1 2 1 2 4 4 3 2 Protein of unknown function DUF16 Spc7 PF08317.11 gi|347523737|ref|YP_004781307.1| - 8.2e-06 24.9 13.9 1.4e-05 24.1 13.9 1.4 1 0 0 1 1 1 1 Spc7 kinetochore protein XhlA PF10779.9 gi|347523737|ref|YP_004781307.1| - 9.8e-06 25.7 17.4 0.00056 20.1 5.6 2.9 1 1 1 3 3 3 2 Haemolysin XhlA DUF4763 PF15960.5 gi|347523737|ref|YP_004781307.1| - 1.8e-05 24.2 12.4 3e-05 23.5 12.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4763) Lebercilin PF15619.6 gi|347523737|ref|YP_004781307.1| - 7e-05 22.6 13.9 7e-05 22.6 13.9 2.2 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease DUF812 PF05667.11 gi|347523737|ref|YP_004781307.1| - 8.3e-05 21.7 13.3 0.00011 21.3 13.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Laminin_I PF06008.14 gi|347523737|ref|YP_004781307.1| - 8.5e-05 22.4 10.3 0.00013 21.8 10.3 1.2 1 0 0 1 1 1 1 Laminin Domain I HOOK PF05622.12 gi|347523737|ref|YP_004781307.1| - 8.7e-05 20.9 10.7 0.00011 20.5 10.7 1.1 1 0 0 1 1 1 1 HOOK protein EzrA PF06160.12 gi|347523737|ref|YP_004781307.1| - 0.00011 20.5 12.1 0.00016 20.0 12.1 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Fib_alpha PF08702.10 gi|347523737|ref|YP_004781307.1| - 0.00013 22.2 14.8 0.0029 17.8 15.1 2.3 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family TMF_DNA_bd PF12329.8 gi|347523737|ref|YP_004781307.1| - 0.00013 21.8 9.2 0.00013 21.8 9.2 2.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|347523737|ref|YP_004781307.1| - 0.00014 22.2 22.4 0.0017 18.6 8.2 2.1 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Taxilin PF09728.9 gi|347523737|ref|YP_004781307.1| - 0.0002 20.7 7.2 0.00029 20.1 7.2 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein V_ATPase_I PF01496.19 gi|347523737|ref|YP_004781307.1| - 0.00031 18.8 1.8 0.0004 18.4 1.8 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family BRE1 PF08647.11 gi|347523737|ref|YP_004781307.1| - 0.00036 20.6 10.5 0.00036 20.6 10.5 1.7 1 1 1 2 2 2 1 BRE1 E3 ubiquitin ligase ERM PF00769.19 gi|347523737|ref|YP_004781307.1| - 0.00036 20.4 20.7 0.00047 20.1 20.7 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family DUF1664 PF07889.12 gi|347523737|ref|YP_004781307.1| - 0.00038 20.5 11.1 0.026 14.5 8.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|347523737|ref|YP_004781307.1| - 0.0004 20.6 14.4 0.0047 17.2 5.8 2.6 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2383 PF09537.10 gi|347523737|ref|YP_004781307.1| - 0.00056 20.2 10.3 0.21 11.9 0.1 3.6 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) Laminin_II PF06009.12 gi|347523737|ref|YP_004781307.1| - 0.00063 19.8 11.2 0.0093 16.0 11.7 2.2 1 1 1 2 2 2 1 Laminin Domain II KxDL PF10241.9 gi|347523737|ref|YP_004781307.1| - 0.00066 19.9 10.5 0.083 13.2 3.2 2.6 1 1 1 2 2 2 2 Uncharacterized conserved protein FH2 PF02181.23 gi|347523737|ref|YP_004781307.1| - 0.00079 18.6 3.8 0.0012 18.0 3.8 1.3 1 0 0 1 1 1 1 Formin Homology 2 Domain Prominin PF05478.11 gi|347523737|ref|YP_004781307.1| - 0.0012 16.9 2.4 0.0017 16.4 2.4 1.2 1 0 0 1 1 1 1 Prominin ZapB PF06005.12 gi|347523737|ref|YP_004781307.1| - 0.0016 18.8 22.9 0.028 14.8 13.8 2.6 1 1 1 2 2 2 1 Cell division protein ZapB NPV_P10 PF05531.12 gi|347523737|ref|YP_004781307.1| - 0.0018 18.7 11.6 0.013 15.9 7.4 3.2 2 1 1 3 3 2 2 Nucleopolyhedrovirus P10 protein DUF4795 PF16043.5 gi|347523737|ref|YP_004781307.1| - 0.0022 17.6 14.9 0.19 11.3 9.4 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) Atg14 PF10186.9 gi|347523737|ref|YP_004781307.1| - 0.0024 17.0 13.0 0.0034 16.5 13.0 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 CALCOCO1 PF07888.11 gi|347523737|ref|YP_004781307.1| - 0.0025 16.8 14.5 0.0037 16.2 14.5 1.2 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like ADIP PF11559.8 gi|347523737|ref|YP_004781307.1| - 0.0025 17.9 18.0 0.04 14.0 11.9 2.2 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding DUF724 PF05266.14 gi|347523737|ref|YP_004781307.1| - 0.0025 17.7 17.1 0.007 16.2 16.9 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF724) LUC7 PF03194.15 gi|347523737|ref|YP_004781307.1| - 0.0026 17.5 2.7 0.0032 17.2 2.7 1.3 1 0 0 1 1 1 1 LUC7 N_terminus DUF948 PF06103.11 gi|347523737|ref|YP_004781307.1| - 0.0031 17.7 5.2 0.0031 17.7 5.2 2.1 2 1 0 2 2 1 1 Bacterial protein of unknown function (DUF948) DUF713 PF05218.14 gi|347523737|ref|YP_004781307.1| - 0.0035 17.1 1.8 0.0054 16.5 1.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF713) Tropomyosin PF00261.20 gi|347523737|ref|YP_004781307.1| - 0.0036 16.7 22.9 0.014 14.8 22.8 1.7 1 1 0 1 1 1 1 Tropomyosin HAP1_N PF04849.13 gi|347523737|ref|YP_004781307.1| - 0.0038 16.5 18.7 0.0069 15.6 18.7 1.4 1 0 0 1 1 1 1 HAP1 N-terminal conserved region Csm1_N PF18504.1 gi|347523737|ref|YP_004781307.1| - 0.004 17.5 20.9 0.55 10.6 3.8 3.4 1 1 2 3 3 3 1 Csm1 N-terminal domain DUF3450 PF11932.8 gi|347523737|ref|YP_004781307.1| - 0.0043 16.4 16.0 0.0076 15.6 15.1 1.7 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.15 gi|347523737|ref|YP_004781307.1| - 0.0047 16.5 9.9 0.0068 16.0 9.9 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit HAUS-augmin3 PF14932.6 gi|347523737|ref|YP_004781307.1| - 0.0048 16.5 10.6 0.0063 16.1 10.6 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 UPF0242 PF06785.11 gi|347523737|ref|YP_004781307.1| - 0.0056 16.8 12.7 0.0093 16.1 12.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Sec34 PF04136.15 gi|347523737|ref|YP_004781307.1| - 0.0057 16.5 7.7 0.014 15.3 5.1 2.1 1 1 1 2 2 2 1 Sec34-like family Baculo_PEP_C PF04513.12 gi|347523737|ref|YP_004781307.1| - 0.0059 16.6 5.2 0.084 12.9 5.8 2.0 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus FPP PF05911.11 gi|347523737|ref|YP_004781307.1| - 0.0065 14.7 12.3 0.0085 14.3 12.3 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil DUF2968 PF11180.8 gi|347523737|ref|YP_004781307.1| - 0.0067 16.1 20.1 0.01 15.4 20.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) HemX PF04375.14 gi|347523737|ref|YP_004781307.1| - 0.0068 15.7 13.6 0.12 11.6 7.1 2.2 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase Prefoldin_2 PF01920.20 gi|347523737|ref|YP_004781307.1| - 0.0068 16.3 22.4 1.6 8.7 9.7 3.3 1 1 2 3 3 3 0 Prefoldin subunit IFT57 PF10498.9 gi|347523737|ref|YP_004781307.1| - 0.0069 15.4 14.8 0.015 14.3 14.4 1.6 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Prefoldin PF02996.17 gi|347523737|ref|YP_004781307.1| - 0.007 16.3 13.8 0.68 9.9 6.1 3.4 1 1 2 3 3 3 1 Prefoldin subunit CorA PF01544.18 gi|347523737|ref|YP_004781307.1| - 0.0079 15.5 11.4 0.012 15.0 11.4 1.3 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Phage_GPO PF05929.11 gi|347523737|ref|YP_004781307.1| - 0.0081 15.8 3.1 0.012 15.2 3.1 1.4 1 0 0 1 1 1 1 Phage capsid scaffolding protein (GPO) serine peptidase Tropomyosin_1 PF12718.7 gi|347523737|ref|YP_004781307.1| - 0.0089 16.2 19.6 0.024 14.8 19.6 1.7 1 1 0 1 1 1 1 Tropomyosin like TMPIT PF07851.13 gi|347523737|ref|YP_004781307.1| - 0.0091 15.3 7.9 0.014 14.7 7.9 1.3 1 0 0 1 1 1 1 TMPIT-like protein SKA2 PF16740.5 gi|347523737|ref|YP_004781307.1| - 0.0094 15.7 16.2 0.046 13.5 2.3 2.7 1 1 1 2 2 2 1 Spindle and kinetochore-associated protein 2 CT_C_D PF02682.16 gi|347523737|ref|YP_004781307.1| - 0.0097 15.7 1.4 0.017 14.9 1.4 1.4 1 0 0 1 1 1 1 Carboxyltransferase domain, subdomain C and D LXG PF04740.12 gi|347523737|ref|YP_004781307.1| - 0.0097 15.6 2.1 0.016 14.9 2.1 1.4 1 0 0 1 1 1 1 LXG domain of WXG superfamily GAS PF13851.6 gi|347523737|ref|YP_004781307.1| - 0.01 15.2 17.4 0.018 14.4 17.4 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.6 gi|347523737|ref|YP_004781307.1| - 0.012 16.0 19.4 0.024 15.0 11.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) FAM76 PF16046.5 gi|347523737|ref|YP_004781307.1| - 0.014 14.8 6.0 0.026 13.9 6.0 1.4 1 0 0 1 1 1 0 FAM76 protein DUF3584 PF12128.8 gi|347523737|ref|YP_004781307.1| - 0.014 13.0 10.1 0.018 12.6 10.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Phage_GP20 PF06810.11 gi|347523737|ref|YP_004781307.1| - 0.016 15.0 5.1 0.032 14.0 5.1 1.6 1 0 0 1 1 1 0 Phage minor structural protein GP20 DUF5082 PF16888.5 gi|347523737|ref|YP_004781307.1| - 0.017 15.4 13.5 0.22 11.8 4.8 3.0 2 1 1 3 3 2 0 Domain of unknown function (DUF5082) Spectrin PF00435.21 gi|347523737|ref|YP_004781307.1| - 0.017 15.6 15.5 0.073 13.6 15.6 2.0 1 1 1 2 2 2 0 Spectrin repeat HrpB7 PF09486.10 gi|347523737|ref|YP_004781307.1| - 0.018 15.4 22.0 0.054 13.9 9.6 2.3 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) COG5 PF10392.9 gi|347523737|ref|YP_004781307.1| - 0.018 15.2 10.6 0.11 12.6 10.6 2.0 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Helo_like_N PF17111.5 gi|347523737|ref|YP_004781307.1| - 0.02 14.3 9.5 0.046 13.1 7.0 2.4 1 1 2 3 3 3 0 Fungal N-terminal domain of STAND proteins KASH_CCD PF14662.6 gi|347523737|ref|YP_004781307.1| - 0.03 14.2 18.3 0.05 13.4 18.3 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH LMBR1 PF04791.16 gi|347523737|ref|YP_004781307.1| - 0.03 13.3 1.9 0.038 12.9 1.9 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF932 PF06067.11 gi|347523737|ref|YP_004781307.1| - 0.03 14.1 1.7 0.045 13.5 1.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF932) LPP PF04728.13 gi|347523737|ref|YP_004781307.1| - 0.034 14.5 8.7 1.2 9.6 4.1 2.6 1 1 1 2 2 2 0 Lipoprotein leucine-zipper Tweety PF04906.13 gi|347523737|ref|YP_004781307.1| - 0.035 12.8 2.0 0.048 12.3 2.0 1.3 1 0 0 1 1 1 0 Tweety Snapin_Pallidin PF14712.6 gi|347523737|ref|YP_004781307.1| - 0.035 14.5 20.0 0.17 12.3 0.6 2.6 1 1 1 2 2 2 0 Snapin/Pallidin DUF3829 PF12889.7 gi|347523737|ref|YP_004781307.1| - 0.037 13.5 0.2 0.049 13.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) FlxA PF14282.6 gi|347523737|ref|YP_004781307.1| - 0.038 14.0 17.1 0.074 13.0 15.9 2.1 1 1 1 2 2 2 0 FlxA-like protein FmiP_Thoc5 PF09766.9 gi|347523737|ref|YP_004781307.1| - 0.04 13.2 13.2 1.2 8.3 10.1 2.1 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 Tektin PF03148.14 gi|347523737|ref|YP_004781307.1| - 0.044 12.5 17.6 0.37 9.5 2.8 2.1 1 1 1 2 2 2 0 Tektin family Cob_adeno_trans PF01923.18 gi|347523737|ref|YP_004781307.1| - 0.046 13.9 7.7 0.17 12.0 5.4 2.2 1 1 2 3 3 3 0 Cobalamin adenosyltransferase COG6 PF06419.11 gi|347523737|ref|YP_004781307.1| - 0.051 11.8 10.8 0.03 12.6 7.8 1.8 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 RmuC PF02646.16 gi|347523737|ref|YP_004781307.1| - 0.054 12.6 12.1 0.5 9.4 1.7 2.4 1 1 2 3 3 3 0 RmuC family APG6_N PF17675.1 gi|347523737|ref|YP_004781307.1| - 0.06 13.9 20.3 0.2 12.2 20.3 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region AATF-Che1 PF13339.6 gi|347523737|ref|YP_004781307.1| - 0.06 14.0 5.6 0.18 12.5 5.5 1.8 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Jnk-SapK_ap_N PF09744.9 gi|347523737|ref|YP_004781307.1| - 0.06 13.6 21.4 0.11 12.7 21.4 1.6 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF4988 PF16378.5 gi|347523737|ref|YP_004781307.1| - 0.061 13.0 7.0 0.046 13.4 2.6 2.6 1 1 2 3 3 3 0 Domain of unknown function DUF4407 PF14362.6 gi|347523737|ref|YP_004781307.1| - 0.063 12.6 10.2 0.13 11.5 10.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) MutS_III PF05192.18 gi|347523737|ref|YP_004781307.1| - 0.063 13.5 2.1 0.097 12.9 2.1 1.4 1 0 0 1 1 1 0 MutS domain III Fmp27_WPPW PF10359.9 gi|347523737|ref|YP_004781307.1| - 0.066 12.1 12.9 0.19 10.6 12.9 1.7 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Seryl_tRNA_N PF02403.22 gi|347523737|ref|YP_004781307.1| - 0.078 13.2 15.2 0.26 11.5 14.8 2.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|347523737|ref|YP_004781307.1| - 0.082 11.5 13.9 0.22 10.1 13.9 1.7 1 1 0 1 1 1 0 Flagellar Assembly Protein A ISG65-75 PF11727.8 gi|347523737|ref|YP_004781307.1| - 0.082 12.1 4.9 0.15 11.3 4.9 1.4 1 0 0 1 1 1 0 Invariant surface glycoprotein MPS2 PF17060.5 gi|347523737|ref|YP_004781307.1| - 0.086 12.1 13.4 0.032 13.5 11.1 1.4 2 0 0 2 2 1 0 Monopolar spindle protein 2 WXG100 PF06013.12 gi|347523737|ref|YP_004781307.1| - 0.091 13.0 7.5 8.7 6.7 4.8 3.3 1 1 2 3 3 3 0 Proteins of 100 residues with WXG UME PF08064.13 gi|347523737|ref|YP_004781307.1| - 0.1 12.5 3.4 0.49 10.3 2.6 2.2 1 1 1 2 2 2 0 UME (NUC010) domain DUF1798 PF08807.10 gi|347523737|ref|YP_004781307.1| - 0.11 12.7 5.6 6.1 7.0 6.9 2.5 2 1 1 3 3 2 0 Bacterial domain of unknown function (DUF1798) Gp58 PF07902.11 gi|347523737|ref|YP_004781307.1| - 0.11 10.7 2.3 0.15 10.3 2.3 1.1 1 0 0 1 1 1 0 gp58-like protein Syntaxin-6_N PF09177.11 gi|347523737|ref|YP_004781307.1| - 0.14 12.7 12.0 0.81 10.3 12.5 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal MNR PF15718.5 gi|347523737|ref|YP_004781307.1| - 0.17 10.0 12.9 0.24 9.5 12.9 1.1 1 0 0 1 1 1 0 Protein moonraker MbeD_MobD PF04899.12 gi|347523737|ref|YP_004781307.1| - 0.18 11.9 14.3 0.63 10.2 4.8 3.0 1 1 1 2 2 2 0 MbeD/MobD like TolA_bind_tri PF16331.5 gi|347523737|ref|YP_004781307.1| - 0.18 11.9 27.7 0.067 13.3 14.8 2.6 2 1 0 3 3 2 0 TolA binding protein trimerisation SpecificRecomb PF10136.9 gi|347523737|ref|YP_004781307.1| - 0.2 9.9 4.4 0.25 9.6 4.4 1.1 1 0 0 1 1 1 0 Site-specific recombinase DivIC PF04977.15 gi|347523737|ref|YP_004781307.1| - 0.21 11.4 20.2 2.3 8.1 9.5 2.8 1 1 1 2 2 2 0 Septum formation initiator FUSC PF04632.12 gi|347523737|ref|YP_004781307.1| - 0.21 10.1 10.1 0.28 9.7 10.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family FliD_C PF07195.12 gi|347523737|ref|YP_004781307.1| - 0.22 10.9 4.7 1.7 8.0 4.7 2.2 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus FemAB PF02388.16 gi|347523737|ref|YP_004781307.1| - 0.23 10.3 10.1 0.19 10.6 5.2 2.0 1 1 1 2 2 2 0 FemAB family YkyA PF10368.9 gi|347523737|ref|YP_004781307.1| - 0.23 11.1 12.2 0.43 10.2 12.2 1.4 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein Fez1 PF06818.15 gi|347523737|ref|YP_004781307.1| - 0.27 11.7 16.5 0.6 10.5 16.5 1.6 1 1 0 1 1 1 0 Fez1 Mod_r PF07200.13 gi|347523737|ref|YP_004781307.1| - 0.27 11.3 14.8 0.64 10.1 14.7 1.6 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DASH_Dam1 PF08653.10 gi|347523737|ref|YP_004781307.1| - 0.28 11.0 1.0 15 5.4 0.3 3.2 2 1 1 3 3 3 0 DASH complex subunit Dam1 Occludin_ELL PF07303.13 gi|347523737|ref|YP_004781307.1| - 0.29 11.9 9.9 2.2 9.0 1.0 2.6 1 1 1 2 2 2 0 Occludin homology domain Spore_III_AB PF09548.10 gi|347523737|ref|YP_004781307.1| - 0.29 11.2 12.7 0.75 9.9 12.7 1.7 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) Bacillus_HBL PF05791.11 gi|347523737|ref|YP_004781307.1| - 0.32 10.8 5.4 0.8 9.5 5.3 1.6 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) YabA PF06156.13 gi|347523737|ref|YP_004781307.1| - 0.32 11.7 14.4 23 5.7 14.4 2.9 1 1 0 1 1 1 0 Initiation control protein YabA ORF6C PF10552.9 gi|347523737|ref|YP_004781307.1| - 0.36 10.9 12.1 4.2 7.5 0.2 3.4 1 1 2 3 3 3 0 ORF6C domain SKA1 PF07160.12 gi|347523737|ref|YP_004781307.1| - 0.37 10.6 14.5 7.6 6.3 5.7 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 HMMR_N PF15905.5 gi|347523737|ref|YP_004781307.1| - 0.38 10.2 19.6 1 8.7 19.6 1.7 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Noelin-1 PF12308.8 gi|347523737|ref|YP_004781307.1| - 0.47 10.5 11.0 4.6 7.3 5.0 2.4 1 1 1 2 2 2 0 Neurogenesis glycoprotein USP8_interact PF08941.10 gi|347523737|ref|YP_004781307.1| - 0.49 10.2 13.6 1.1 9.0 5.6 2.2 1 1 1 2 2 2 0 USP8 interacting CC2-LZ PF16516.5 gi|347523737|ref|YP_004781307.1| - 0.5 10.8 15.8 7.1 7.1 4.6 2.5 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator TPR_MLP1_2 PF07926.12 gi|347523737|ref|YP_004781307.1| - 0.51 10.4 19.5 0.46 10.5 15.7 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF745 PF05335.13 gi|347523737|ref|YP_004781307.1| - 0.51 10.0 11.8 1.1 9.0 11.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF745) ArdA PF07275.11 gi|347523737|ref|YP_004781307.1| - 0.53 10.9 2.7 6.9 7.2 2.7 2.3 1 1 0 1 1 1 0 Antirestriction protein (ArdA) DUF3972 PF13118.6 gi|347523737|ref|YP_004781307.1| - 0.6 10.6 13.2 0.21 12.0 8.2 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF3972) THOC7 PF05615.13 gi|347523737|ref|YP_004781307.1| - 0.6 10.4 14.9 1 9.6 14.9 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 ABC_tran_CTD PF16326.5 gi|347523737|ref|YP_004781307.1| - 0.62 10.4 23.9 2.9 8.2 2.9 3.2 1 1 2 3 3 3 0 ABC transporter C-terminal domain COG2 PF06148.11 gi|347523737|ref|YP_004781307.1| - 0.62 10.2 15.3 3 7.9 5.1 2.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc29 PF17082.5 gi|347523737|ref|YP_004781307.1| - 0.63 9.8 12.9 11 5.7 12.9 2.2 1 1 0 1 1 1 0 Spindle Pole Component 29 DUF1465 PF07323.12 gi|347523737|ref|YP_004781307.1| - 0.63 9.9 11.1 1.5 8.7 10.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) FlaC_arch PF05377.11 gi|347523737|ref|YP_004781307.1| - 0.66 10.4 14.6 1.4e+02 3.0 0.1 3.1 1 1 1 2 2 1 0 Flagella accessory protein C (FlaC) DUF641 PF04859.12 gi|347523737|ref|YP_004781307.1| - 0.66 10.3 16.1 4.8 7.5 10.3 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF4559 PF15112.6 gi|347523737|ref|YP_004781307.1| - 0.7 9.5 9.5 0.11 12.2 5.7 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4559) Nup54 PF13874.6 gi|347523737|ref|YP_004781307.1| - 0.73 9.9 20.1 0.46 10.6 8.2 2.2 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DivIVA PF05103.13 gi|347523737|ref|YP_004781307.1| - 0.82 9.8 15.5 16 5.6 15.3 2.4 1 1 0 1 1 1 0 DivIVA protein Cauli_AT PF03233.13 gi|347523737|ref|YP_004781307.1| - 0.83 9.6 13.5 2.5 8.0 5.4 2.9 2 1 1 3 3 3 0 Aphid transmission protein NERD PF08378.11 gi|347523737|ref|YP_004781307.1| - 0.91 10.0 3.8 0.95 10.0 0.1 2.5 2 1 0 2 2 1 0 Nuclease-related domain PI3K_P85_iSH2 PF16454.5 gi|347523737|ref|YP_004781307.1| - 1 8.9 18.9 3.9 7.0 17.8 2.2 2 1 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Nup88 PF10168.9 gi|347523737|ref|YP_004781307.1| - 1 7.1 12.8 1.4 6.6 12.8 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF3251 PF11622.8 gi|347523737|ref|YP_004781307.1| - 1 9.0 11.9 4.6 6.9 6.6 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3251) GBP_C PF02841.14 gi|347523737|ref|YP_004781307.1| - 1 8.7 13.6 1.8 7.9 13.6 1.3 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Sec2p PF06428.11 gi|347523737|ref|YP_004781307.1| - 1.2 9.2 17.7 2.4 8.2 1.1 2.8 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Uds1 PF15456.6 gi|347523737|ref|YP_004781307.1| - 1.2 9.3 18.7 3.7 7.7 7.7 3.2 1 1 2 3 3 3 0 Up-regulated During Septation Yuri_gagarin PF15934.5 gi|347523737|ref|YP_004781307.1| - 1.3 8.8 13.9 2.1 8.2 13.9 1.3 1 0 0 1 1 1 0 Yuri gagarin Uso1_p115_C PF04871.13 gi|347523737|ref|YP_004781307.1| - 1.4 9.3 15.5 7.1 7.0 15.5 2.0 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4446 PF14584.6 gi|347523737|ref|YP_004781307.1| - 1.4 8.9 10.2 9.4 6.2 5.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) CENP-H PF05837.12 gi|347523737|ref|YP_004781307.1| - 1.4 9.4 17.5 1.9 9.0 13.6 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) betaPIX_CC PF16523.5 gi|347523737|ref|YP_004781307.1| - 1.5 8.7 14.8 4.2 7.3 14.4 2.0 1 1 0 1 1 1 0 betaPIX coiled coil OEP PF02321.18 gi|347523737|ref|YP_004781307.1| - 1.7 8.4 16.8 0.96 9.2 13.4 2.0 1 1 0 1 1 1 0 Outer membrane efflux protein DLP_helical PF18709.1 gi|347523737|ref|YP_004781307.1| - 1.8 7.7 13.3 0.35 10.0 2.7 2.2 1 1 1 2 2 2 0 Dynamin-like helical domain DUF1487 PF07368.11 gi|347523737|ref|YP_004781307.1| - 1.8 8.0 8.7 6.1 6.2 0.8 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1487) Med30 PF11315.8 gi|347523737|ref|YP_004781307.1| - 1.8 8.7 12.2 6.8 6.9 12.2 1.9 1 1 0 1 1 1 0 Mediator complex subunit 30 GrpE PF01025.19 gi|347523737|ref|YP_004781307.1| - 1.9 8.2 15.4 56 3.3 14.5 2.7 1 1 1 2 2 2 0 GrpE DUF3138 PF11336.8 gi|347523737|ref|YP_004781307.1| - 2 7.0 8.2 18 3.8 8.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3138) TMF_TATA_bd PF12325.8 gi|347523737|ref|YP_004781307.1| - 2.2 8.5 21.4 0.57 10.4 15.3 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Allexi_40kDa PF05549.11 gi|347523737|ref|YP_004781307.1| - 2.3 7.6 4.6 3.7 7.0 4.6 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein Apt1 PF10351.9 gi|347523737|ref|YP_004781307.1| - 3 6.6 9.8 3.7 6.3 9.8 1.4 1 1 0 1 1 1 0 Golgi-body localisation protein domain SpoIIID PF12116.8 gi|347523737|ref|YP_004781307.1| - 3.4 7.8 7.1 1.4 9.1 3.7 2.2 2 1 0 2 2 1 0 Stage III sporulation protein D TEX13 PF15186.6 gi|347523737|ref|YP_004781307.1| - 3.4 7.4 16.0 5.5 6.7 8.1 2.1 1 1 1 2 2 2 0 Testis-expressed sequence 13 protein family PspA_IM30 PF04012.12 gi|347523737|ref|YP_004781307.1| - 3.7 7.0 23.2 19 4.7 23.1 1.9 1 1 0 1 1 1 0 PspA/IM30 family Sulfatase_C PF14707.6 gi|347523737|ref|YP_004781307.1| - 4.2 8.1 5.1 21 5.9 1.8 2.3 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase CLZ PF16526.5 gi|347523737|ref|YP_004781307.1| - 4.6 7.7 18.2 8.8 6.8 11.9 3.1 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Swi5 PF07061.11 gi|347523737|ref|YP_004781307.1| - 4.6 7.4 14.2 26 5.0 9.0 3.2 1 1 1 2 2 2 0 Swi5 Sec8_exocyst PF04048.14 gi|347523737|ref|YP_004781307.1| - 4.7 7.1 11.1 3.3 7.6 7.4 2.3 2 1 0 2 2 1 0 Sec8 exocyst complex component specific domain DASH_Spc34 PF08657.10 gi|347523737|ref|YP_004781307.1| - 5 6.8 10.0 8.3 6.1 10.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF4527 PF15030.6 gi|347523737|ref|YP_004781307.1| - 5.6 6.3 13.2 9.7 5.5 13.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) BST2 PF16716.5 gi|347523737|ref|YP_004781307.1| - 5.7 7.6 15.5 12 6.6 14.2 2.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 DUF2730 PF10805.8 gi|347523737|ref|YP_004781307.1| - 5.9 7.0 11.7 21 5.2 1.6 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Spc24 PF08286.11 gi|347523737|ref|YP_004781307.1| - 6.1 7.1 13.8 2.1e+02 2.2 13.4 2.8 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Macoilin PF09726.9 gi|347523737|ref|YP_004781307.1| - 6.1 5.3 12.8 7.9 4.9 12.8 1.1 1 0 0 1 1 1 0 Macoilin family DUF4140 PF13600.6 gi|347523737|ref|YP_004781307.1| - 6.5 7.3 20.3 1.8e+04 -5.2 20.3 3.5 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) GIT_CC PF16559.5 gi|347523737|ref|YP_004781307.1| - 6.6 6.7 18.7 8.2 6.4 4.6 4.1 2 1 3 5 5 5 0 GIT coiled-coil Rho guanine nucleotide exchange factor ACP_PD PF04336.12 gi|347523737|ref|YP_004781307.1| - 6.8 7.2 6.7 5.8 7.4 2.1 2.5 1 1 2 3 3 2 0 Acyl carrier protein phosphodiesterase Sin3_corepress PF08295.12 gi|347523737|ref|YP_004781307.1| - 6.9 6.8 9.4 1.9 8.6 2.5 2.3 1 1 1 2 2 2 0 Sin3 family co-repressor zf-C4H2 PF10146.9 gi|347523737|ref|YP_004781307.1| - 7 6.9 14.1 11 6.3 14.1 1.2 1 0 0 1 1 1 0 Zinc finger-containing protein DUF2203 PF09969.9 gi|347523737|ref|YP_004781307.1| - 7.4 7.3 17.7 1.5 9.6 7.3 2.6 2 1 1 3 3 2 0 Uncharacterized conserved protein (DUF2203) DUF4349 PF14257.6 gi|347523737|ref|YP_004781307.1| - 9 5.7 20.3 0.61 9.5 7.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) DHR10 PF18595.1 gi|347523737|ref|YP_004781307.1| - 9.5 6.3 26.9 14 5.8 18.5 2.3 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain TSNAXIP1_N PF15739.5 gi|347523737|ref|YP_004781307.1| - 10 6.6 16.0 4.8 7.6 11.7 2.2 1 1 1 2 2 2 0 Translin-associated factor X-interacting N-terminus MazE_antitoxin PF04014.18 gi|347523738|ref|YP_004781308.1| - 1.2e-09 37.9 0.6 1.5e-09 37.5 0.6 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|347523738|ref|YP_004781308.1| - 0.0056 16.6 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like PrlF_antitoxin PF15937.5 gi|347523738|ref|YP_004781308.1| - 0.18 12.3 0.0 0.23 11.9 0.0 1.1 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|347523739|ref|YP_004781309.1| - 8.1e-18 65.1 0.1 9.2e-18 64.9 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF3782 PF12644.7 gi|347523740|ref|YP_004781310.1| - 1e-21 76.9 7.9 2.4e-21 75.7 0.2 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|347523740|ref|YP_004781310.1| - 8.9e-18 64.0 2.7 9.4e-18 63.9 0.5 2.1 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF724 PF05266.14 gi|347523740|ref|YP_004781310.1| - 2.4e-05 24.2 3.8 3.6e-05 23.7 3.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF724) SlyX PF04102.12 gi|347523740|ref|YP_004781310.1| - 0.00012 22.7 16.6 0.0003 21.3 13.2 2.3 1 1 1 2 2 2 1 SlyX TolA_bind_tri PF16331.5 gi|347523740|ref|YP_004781310.1| - 0.00033 20.7 18.4 0.00039 20.5 14.6 2.1 1 1 1 2 2 2 1 TolA binding protein trimerisation DUF4763 PF15960.5 gi|347523740|ref|YP_004781310.1| - 0.00041 19.8 7.8 0.00062 19.1 7.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4763) EzrA PF06160.12 gi|347523740|ref|YP_004781310.1| - 0.0013 17.0 4.1 0.0016 16.7 4.1 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Jnk-SapK_ap_N PF09744.9 gi|347523740|ref|YP_004781310.1| - 0.0019 18.5 7.2 0.0032 17.7 7.2 1.3 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 Tropomyosin_1 PF12718.7 gi|347523740|ref|YP_004781310.1| - 0.0022 18.2 7.7 0.0037 17.4 7.7 1.3 1 0 0 1 1 1 1 Tropomyosin like Spc7 PF08317.11 gi|347523740|ref|YP_004781310.1| - 0.0031 16.4 7.0 0.0046 15.9 7.0 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.12 gi|347523740|ref|YP_004781310.1| - 0.0036 17.3 4.5 0.0077 16.3 4.0 1.9 2 0 0 2 2 1 1 Protein of unknown function (DUF1664) EMP24_GP25L PF01105.24 gi|347523740|ref|YP_004781310.1| - 0.0036 17.3 2.8 0.019 14.9 2.3 2.0 2 0 0 2 2 2 1 emp24/gp25L/p24 family/GOLD KASH_CCD PF14662.6 gi|347523740|ref|YP_004781310.1| - 0.0057 16.5 8.6 0.0086 15.9 8.6 1.4 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH TBCA PF02970.16 gi|347523740|ref|YP_004781310.1| - 0.0079 16.5 10.3 0.058 13.7 8.8 2.7 2 1 1 3 3 2 1 Tubulin binding cofactor A PspA_IM30 PF04012.12 gi|347523740|ref|YP_004781310.1| - 0.0081 15.8 9.5 0.011 15.3 9.0 1.5 2 0 0 2 2 1 1 PspA/IM30 family ADIP PF11559.8 gi|347523740|ref|YP_004781310.1| - 0.01 15.9 5.5 0.021 14.9 5.5 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding KxDL PF10241.9 gi|347523740|ref|YP_004781310.1| - 0.014 15.6 9.5 1.1 9.6 6.5 3.1 2 1 1 3 3 3 0 Uncharacterized conserved protein TMF_DNA_bd PF12329.8 gi|347523740|ref|YP_004781310.1| - 0.017 15.1 4.9 0.017 15.1 4.9 1.9 1 1 1 2 2 1 0 TATA element modulatory factor 1 DNA binding XhlA PF10779.9 gi|347523740|ref|YP_004781310.1| - 0.019 15.1 8.1 0.052 13.8 2.1 2.8 2 1 1 3 3 2 0 Haemolysin XhlA FapA PF03961.13 gi|347523740|ref|YP_004781310.1| - 0.02 13.5 1.8 0.027 13.1 1.8 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Prominin PF05478.11 gi|347523740|ref|YP_004781310.1| - 0.027 12.4 1.0 0.033 12.2 1.0 1.1 1 0 0 1 1 1 0 Prominin GAS PF13851.6 gi|347523740|ref|YP_004781310.1| - 0.031 13.6 9.6 0.048 13.0 9.6 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding ArdA PF07275.11 gi|347523740|ref|YP_004781310.1| - 0.034 14.8 0.1 0.047 14.3 0.1 1.2 1 0 0 1 1 1 0 Antirestriction protein (ArdA) ERM PF00769.19 gi|347523740|ref|YP_004781310.1| - 0.037 13.9 10.6 0.049 13.5 10.6 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Laminin_II PF06009.12 gi|347523740|ref|YP_004781310.1| - 0.037 14.0 7.9 0.03 14.3 6.0 1.8 2 1 1 3 3 1 0 Laminin Domain II DUF16 PF01519.16 gi|347523740|ref|YP_004781310.1| - 0.041 14.4 10.1 0.12 12.9 9.3 2.1 2 1 0 2 2 1 0 Protein of unknown function DUF16 Mod_r PF07200.13 gi|347523740|ref|YP_004781310.1| - 0.047 13.8 7.3 0.074 13.2 7.3 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.11 gi|347523740|ref|YP_004781310.1| - 0.047 14.1 6.6 0.063 13.7 3.6 2.5 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF4988 PF16378.5 gi|347523740|ref|YP_004781310.1| - 0.05 13.3 1.5 0.091 12.4 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function IFT57 PF10498.9 gi|347523740|ref|YP_004781310.1| - 0.051 12.5 4.1 0.071 12.1 4.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Exonuc_VII_L PF02601.15 gi|347523740|ref|YP_004781310.1| - 0.054 13.1 1.7 0.067 12.8 1.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|347523740|ref|YP_004781310.1| - 0.054 13.7 5.8 0.14 12.4 5.4 1.8 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family ATG16 PF08614.11 gi|347523740|ref|YP_004781310.1| - 0.066 13.4 11.3 0.097 12.9 11.3 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) TraO PF10626.9 gi|347523740|ref|YP_004781310.1| - 0.069 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Conjugative transposon protein TraO DUF812 PF05667.11 gi|347523740|ref|YP_004781310.1| - 0.074 11.9 6.4 0.091 11.6 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) ZapB PF06005.12 gi|347523740|ref|YP_004781310.1| - 0.081 13.4 14.9 0.2 12.1 14.9 1.7 1 0 0 1 1 1 0 Cell division protein ZapB AAA_13 PF13166.6 gi|347523740|ref|YP_004781310.1| - 0.081 11.6 3.5 0.11 11.1 3.5 1.1 1 0 0 1 1 1 0 AAA domain NPV_P10 PF05531.12 gi|347523740|ref|YP_004781310.1| - 0.088 13.3 5.4 0.32 11.5 5.4 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.11 gi|347523740|ref|YP_004781310.1| - 0.091 12.9 7.7 0.085 13.0 6.6 1.5 2 0 0 2 2 1 0 Uncharacterised protein family (UPF0242) N-terminus CLZ PF16526.5 gi|347523740|ref|YP_004781310.1| - 0.1 12.9 10.8 0.28 11.6 10.5 1.9 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CENP-H PF05837.12 gi|347523740|ref|YP_004781310.1| - 0.11 13.0 7.5 0.2 12.1 7.5 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF2730 PF10805.8 gi|347523740|ref|YP_004781310.1| - 0.14 12.3 5.6 0.24 11.5 4.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DivIC PF04977.15 gi|347523740|ref|YP_004781310.1| - 0.15 11.8 11.3 0.29 10.9 2.8 2.5 1 1 2 3 3 3 0 Septum formation initiator Apt1 PF10351.9 gi|347523740|ref|YP_004781310.1| - 0.17 10.7 4.6 0.21 10.4 4.6 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF641 PF04859.12 gi|347523740|ref|YP_004781310.1| - 0.17 12.2 7.2 0.34 11.2 6.2 1.9 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) AATF-Che1 PF13339.6 gi|347523740|ref|YP_004781310.1| - 0.21 12.2 3.4 1.4 9.6 3.7 1.9 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Fmp27_WPPW PF10359.9 gi|347523740|ref|YP_004781310.1| - 0.26 10.1 3.1 0.34 9.7 3.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CorA PF01544.18 gi|347523740|ref|YP_004781310.1| - 0.29 10.4 7.7 0.5 9.6 7.3 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein MbeD_MobD PF04899.12 gi|347523740|ref|YP_004781310.1| - 0.31 11.2 10.4 1.8 8.7 10.4 2.2 1 1 0 1 1 1 0 MbeD/MobD like MPS2 PF17060.5 gi|347523740|ref|YP_004781310.1| - 0.42 9.8 5.9 0.72 9.1 5.7 1.4 1 1 0 1 1 1 0 Monopolar spindle protein 2 LPP PF04728.13 gi|347523740|ref|YP_004781310.1| - 0.45 11.0 3.7 1.3 9.5 3.6 1.9 1 1 0 1 1 1 0 Lipoprotein leucine-zipper DUF4795 PF16043.5 gi|347523740|ref|YP_004781310.1| - 0.51 9.9 7.9 0.72 9.4 6.7 1.9 2 1 0 2 2 1 0 Domain of unknown function (DUF4795) Nup54 PF13874.6 gi|347523740|ref|YP_004781310.1| - 0.58 10.3 12.4 1.1 9.3 11.9 1.7 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Spc24 PF08286.11 gi|347523740|ref|YP_004781310.1| - 0.64 10.3 7.4 2.7 8.3 7.3 2.2 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 TEX13 PF15186.6 gi|347523740|ref|YP_004781310.1| - 0.75 9.5 11.5 1.8 8.2 10.3 1.9 1 1 1 2 2 2 0 Testis-expressed sequence 13 protein family BLOC1_2 PF10046.9 gi|347523740|ref|YP_004781310.1| - 0.96 9.8 9.3 3.6 8.0 6.2 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3251 PF11622.8 gi|347523740|ref|YP_004781310.1| - 1.1 8.9 5.7 0.63 9.7 3.4 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF3251) FlxA PF14282.6 gi|347523740|ref|YP_004781310.1| - 1.5 8.8 11.1 3.9 7.5 10.6 1.7 1 1 0 1 1 1 0 FlxA-like protein Csm1_N PF18504.1 gi|347523740|ref|YP_004781310.1| - 1.6 9.1 10.6 4.1 7.8 6.3 2.9 2 1 2 4 4 3 0 Csm1 N-terminal domain ABC_tran_CTD PF16326.5 gi|347523740|ref|YP_004781310.1| - 1.6 9.0 13.1 25 5.2 11.9 2.7 2 1 0 2 2 1 0 ABC transporter C-terminal domain YabA PF06156.13 gi|347523740|ref|YP_004781310.1| - 1.7 9.3 9.4 3.4 8.4 8.8 1.8 1 1 0 1 1 1 0 Initiation control protein YabA DUF5082 PF16888.5 gi|347523740|ref|YP_004781310.1| - 2.1 8.6 8.2 9.5 6.5 4.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF3138 PF11336.8 gi|347523740|ref|YP_004781310.1| - 4.5 5.8 4.6 8.9 4.8 4.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3138) Spc29 PF17082.5 gi|347523740|ref|YP_004781310.1| - 4.5 7.0 9.2 74 3.1 0.0 2.8 2 1 0 2 2 2 0 Spindle Pole Component 29 FAM76 PF16046.5 gi|347523740|ref|YP_004781310.1| - 8.1 5.7 7.1 19 4.5 7.1 1.5 1 1 0 1 1 1 0 FAM76 protein ATPase_2 PF01637.18 gi|347523741|ref|YP_004781311.1| - 3.1e-11 43.7 0.0 1.4e-10 41.5 0.0 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347523741|ref|YP_004781311.1| - 4.6e-07 30.4 3.7 8.5e-07 29.5 1.6 2.3 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|347523741|ref|YP_004781311.1| - 3.9e-05 23.1 0.0 7.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_22 PF13401.6 gi|347523741|ref|YP_004781311.1| - 8.1e-05 22.9 0.0 0.00015 22.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|347523741|ref|YP_004781311.1| - 0.0012 18.9 0.0 0.0037 17.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347523741|ref|YP_004781311.1| - 0.026 14.9 0.0 0.071 13.5 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|347523741|ref|YP_004781311.1| - 0.033 14.3 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|347523741|ref|YP_004781311.1| - 0.2 11.6 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase RNA_helicase PF00910.22 gi|347523741|ref|YP_004781311.1| - 0.27 11.7 0.0 0.42 11.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase CcdA PF07362.12 gi|347523742|ref|YP_004781312.1| - 0.0001 22.6 3.6 0.00014 22.2 3.6 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA KorB PF08535.10 gi|347523742|ref|YP_004781312.1| - 0.047 13.7 0.5 0.072 13.1 0.4 1.4 1 1 0 1 1 1 0 KorB domain TilS PF09179.11 gi|347523742|ref|YP_004781312.1| - 0.051 14.1 2.6 0.081 13.4 2.6 1.3 1 0 0 1 1 1 0 TilS substrate binding domain PSK_trans_fac PF07704.11 gi|347523742|ref|YP_004781312.1| - 0.59 10.9 10.1 2.7 8.8 10.1 1.8 1 1 0 1 1 1 0 Rv0623-like transcription factor PIN PF01850.21 gi|347523743|ref|YP_004781313.1| - 3.7e-06 27.5 1.2 5.2e-06 27.0 1.2 1.2 1 0 0 1 1 1 1 PIN domain PaREP1 PF05942.11 gi|347523744|ref|YP_004781314.1| - 6.6e-31 106.6 2.9 9.4e-31 106.1 2.9 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SesA PF17107.5 gi|347523744|ref|YP_004781314.1| - 0.0056 16.9 0.5 0.025 14.8 0.4 1.9 2 0 0 2 2 2 1 N-terminal domain on NACHT_NTPase and P-loop NTPases T3SS_needle_E PF08988.10 gi|347523744|ref|YP_004781314.1| - 0.1 12.7 2.2 1.2 9.4 0.3 2.4 1 1 1 2 2 2 0 Type III secretion system, cytoplasmic E component of needle PaREP1 PF05942.11 gi|347523745|ref|YP_004781315.1| - 2.7e-28 98.2 0.3 5.2e-28 97.3 0.0 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family EPSP_synthase PF00275.20 gi|347523745|ref|YP_004781315.1| - 0.18 10.4 0.0 0.26 9.9 0.0 1.1 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SNase PF00565.17 gi|347523746|ref|YP_004781316.1| - 8.2e-08 32.7 0.0 1.2e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue TrmB PF01978.19 gi|347523747|ref|YP_004781317.1| - 0.0048 16.8 0.2 0.013 15.4 0.2 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|347523747|ref|YP_004781317.1| - 0.023 14.6 0.4 0.67 9.9 0.0 2.4 2 0 0 2 2 2 0 MarR family MarR PF01047.22 gi|347523747|ref|YP_004781317.1| - 0.029 14.3 0.0 0.34 10.9 0.0 2.4 2 1 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|347523747|ref|YP_004781317.1| - 0.03 14.4 0.2 31 4.7 0.0 3.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|347523747|ref|YP_004781317.1| - 0.064 12.8 0.0 2 8.0 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|347523747|ref|YP_004781317.1| - 0.084 12.7 0.0 3 7.7 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain C_GCAxxG_C_C PF09719.10 gi|347523748|ref|YP_004781318.1| - 5.6e-13 49.2 0.0 5.6e-13 49.2 0.0 1.8 2 0 0 2 2 2 1 Putative redox-active protein (C_GCAxxG_C_C) Cytochrom_c3_2 PF14537.6 gi|347523748|ref|YP_004781318.1| - 0.052 14.0 0.8 0.1 13.1 0.8 1.5 1 0 0 1 1 1 0 Cytochrome c3 Zn_Tnp_IS1595 PF12760.7 gi|347523748|ref|YP_004781318.1| - 0.072 13.1 2.2 0.16 11.9 2.2 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Cytochrome_C7 PF14522.6 gi|347523748|ref|YP_004781318.1| - 0.086 12.8 3.7 0.19 11.7 3.5 1.8 1 1 0 1 1 1 0 Cytochrome c7 and related cytochrome c PHD_4 PF16866.5 gi|347523748|ref|YP_004781318.1| - 0.091 12.9 0.4 0.18 11.9 0.4 1.4 1 0 0 1 1 1 0 PHD-finger DSX_dimer PF08828.10 gi|347523748|ref|YP_004781318.1| - 0.18 11.5 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Doublesex dimerisation domain HypA PF01155.19 gi|347523748|ref|YP_004781318.1| - 0.41 10.7 2.3 0.41 10.7 0.6 1.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4405 PF14358.6 gi|347523749|ref|YP_004781319.1| - 0.00082 19.9 8.9 0.00082 19.9 8.9 3.2 3 1 0 3 3 3 1 Domain of unknown function (DUF4405) Ferric_reduct PF01794.19 gi|347523749|ref|YP_004781319.1| - 0.0095 16.1 2.5 0.0095 16.1 2.5 2.6 1 1 1 2 2 2 1 Ferric reductase like transmembrane component DUF4271 PF14093.6 gi|347523749|ref|YP_004781319.1| - 0.86 9.5 8.7 1.4 8.8 0.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4271) Usp PF00582.26 gi|347523751|ref|YP_004781321.1| - 5.7e-26 91.7 0.9 6.5e-26 91.5 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family PGM_PMM_I PF02878.16 gi|347523751|ref|YP_004781321.1| - 0.0067 16.1 0.5 1.9 8.2 0.1 2.1 2 0 0 2 2 2 2 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP_endonuc_2 PF01261.24 gi|347523751|ref|YP_004781321.1| - 0.011 15.2 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Robl_LC7 PF03259.17 gi|347523752|ref|YP_004781322.1| - 0.024 14.4 0.2 0.054 13.3 0.0 1.6 2 0 0 2 2 2 0 Roadblock/LC7 domain CBS PF00571.28 gi|347523753|ref|YP_004781323.1| - 5.9e-33 113.1 2.4 3e-16 59.6 0.1 2.0 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|347523753|ref|YP_004781323.1| - 0.0011 19.2 0.0 0.042 14.1 0.0 2.4 2 0 0 2 2 2 1 Translation initiation factor IF-3, N-terminal domain ATPase_2 PF01637.18 gi|347523754|ref|YP_004781324.1| - 1.3e-20 74.3 0.0 2.9e-19 69.9 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|347523754|ref|YP_004781324.1| - 1.7e-09 38.0 0.0 2.9e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|347523754|ref|YP_004781324.1| - 2.8e-09 37.1 0.0 4.2e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347523754|ref|YP_004781324.1| - 5e-09 36.8 3.8 1.1e-05 25.9 0.1 3.3 3 1 0 4 4 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|347523754|ref|YP_004781324.1| - 7.5e-08 32.7 0.0 1.9e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|347523754|ref|YP_004781324.1| - 5.8e-05 22.8 2.1 0.0003 20.5 0.3 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|347523754|ref|YP_004781324.1| - 0.00015 21.7 0.0 0.00031 20.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_20 PF12840.7 gi|347523754|ref|YP_004781324.1| - 0.00077 19.5 0.6 0.0036 17.3 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|347523754|ref|YP_004781324.1| - 0.0013 18.2 0.0 0.0066 16.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TniB PF05621.11 gi|347523754|ref|YP_004781324.1| - 0.0025 17.3 0.0 0.11 11.9 0.0 2.9 2 1 0 2 2 2 1 Bacterial TniB protein MarR_2 PF12802.7 gi|347523754|ref|YP_004781324.1| - 0.0025 17.6 0.4 0.0025 17.6 0.4 2.9 3 0 0 3 3 3 1 MarR family HTH_23 PF13384.6 gi|347523754|ref|YP_004781324.1| - 0.0029 17.3 0.6 0.0079 16.0 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_1 PF00126.27 gi|347523754|ref|YP_004781324.1| - 0.0051 16.7 0.0 0.02 14.8 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MerR PF00376.23 gi|347523754|ref|YP_004781324.1| - 0.011 15.5 0.0 0.027 14.2 0.0 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_28 PF13518.6 gi|347523754|ref|YP_004781324.1| - 0.022 14.9 0.0 0.059 13.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain NACHT PF05729.12 gi|347523754|ref|YP_004781324.1| - 0.063 13.2 0.1 16 5.4 0.0 2.7 3 0 0 3 3 3 0 NACHT domain Roc PF08477.13 gi|347523754|ref|YP_004781324.1| - 0.09 13.0 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Cdc6_C PF09079.11 gi|347523754|ref|YP_004781324.1| - 0.1 12.6 0.0 0.51 10.3 0.0 2.1 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain DUF4143 PF13635.6 gi|347523754|ref|YP_004781324.1| - 0.22 11.7 0.0 0.41 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Methyltr_RsmB-F PF01189.17 gi|347523755|ref|YP_004781325.1| - 1.8e-54 184.4 0.0 2.7e-54 183.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|347523755|ref|YP_004781325.1| - 1.4e-05 25.5 0.0 2.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|347523755|ref|YP_004781325.1| - 0.00041 20.2 0.0 0.00063 19.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|347523755|ref|YP_004781325.1| - 0.00044 20.4 0.0 0.00075 19.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_25 PF13649.6 gi|347523755|ref|YP_004781325.1| - 0.0014 19.3 0.0 0.0036 18.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|347523755|ref|YP_004781325.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Radical_SAM PF04055.21 gi|347523755|ref|YP_004781325.1| - 0.051 14.0 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Radical SAM superfamily Fibrillarin PF01269.17 gi|347523755|ref|YP_004781325.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin AID PF18767.1 gi|347523756|ref|YP_004781326.1| - 0.024 14.7 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Activation induced deaminase PaREP1 PF05942.11 gi|347523757|ref|YP_004781327.1| - 1.2e-26 92.9 6.4 1.7e-26 92.4 6.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|347523757|ref|YP_004781327.1| - 6.9e-06 26.3 0.0 1.5e-05 25.2 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF5618) HEPN PF05168.14 gi|347523757|ref|YP_004781327.1| - 2e-05 24.7 6.9 9.6e-05 22.5 6.3 2.2 1 1 0 1 1 1 1 HEPN domain THDPS_N_2 PF14805.6 gi|347523757|ref|YP_004781327.1| - 0.014 15.6 3.0 0.044 14.0 0.5 2.4 2 1 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal HicB PF05534.12 gi|347523757|ref|YP_004781327.1| - 0.032 14.1 0.4 0.077 12.8 0.0 1.8 2 0 0 2 2 2 0 HicB family COG6 PF06419.11 gi|347523757|ref|YP_004781327.1| - 0.032 12.5 0.4 0.16 10.2 0.0 1.8 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 DUF1771 PF08590.10 gi|347523757|ref|YP_004781327.1| - 0.26 11.7 6.8 0.61 10.5 3.8 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF1771) FUSC PF04632.12 gi|347523757|ref|YP_004781327.1| - 1.4 7.3 10.9 2.7 6.4 10.9 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family Vsr PF03852.15 gi|347523758|ref|YP_004781328.1| - 0.04 13.8 1.0 0.047 13.5 1.0 1.1 1 0 0 1 1 1 0 DNA mismatch endonuclease Vsr Peptidase_S49_N PF08496.10 gi|347523758|ref|YP_004781328.1| - 0.21 11.6 4.5 0.23 11.5 4.5 1.0 1 0 0 1 1 1 0 Peptidase family S49 N-terminal CoA_binding PF02629.19 gi|347523759|ref|YP_004781329.1| - 4.5e-29 101.0 1.0 4.5e-29 101.0 1.0 2.5 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|347523759|ref|YP_004781329.1| - 3.2e-16 59.5 0.3 5.6e-16 58.7 0.3 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|347523759|ref|YP_004781329.1| - 3e-14 53.0 0.1 9.9e-14 51.3 0.0 1.8 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|347523759|ref|YP_004781329.1| - 5e-12 46.3 0.6 2.4e-10 40.9 0.0 2.6 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|347523759|ref|YP_004781329.1| - 0.081 13.8 0.0 0.61 10.9 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.10 gi|347523760|ref|YP_004781330.1| - 8.6e-62 208.3 1.7 7.9e-61 205.1 0.5 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|347523760|ref|YP_004781330.1| - 7.2e-20 71.4 0.0 1.3e-19 70.6 0.0 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|347523760|ref|YP_004781330.1| - 1.3e-14 54.2 1.6 9e-14 51.5 0.6 2.7 2 1 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|347523760|ref|YP_004781330.1| - 9.2e-07 28.8 0.1 2.4e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|347523760|ref|YP_004781330.1| - 2.7e-05 23.8 0.0 4.8e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|347523760|ref|YP_004781330.1| - 7.7e-05 22.3 0.0 0.00014 21.4 0.0 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|347523760|ref|YP_004781330.1| - 0.026 14.1 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 RimK-like ATP-grasp domain DUF1664 PF07889.12 gi|347523761|ref|YP_004781331.1| - 4e-07 30.1 1.1 0.02 15.0 0.3 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|347523761|ref|YP_004781331.1| - 5.4e-06 25.5 1.8 7.4e-06 25.1 1.8 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|347523761|ref|YP_004781331.1| - 1.1e-05 25.5 4.5 1.1e-05 25.5 4.5 1.8 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF713 PF05218.14 gi|347523761|ref|YP_004781331.1| - 5.9e-05 22.9 2.3 0.0019 17.9 4.0 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF713) Med4 PF10018.9 gi|347523761|ref|YP_004781331.1| - 0.00011 22.0 3.3 0.03 14.0 3.0 2.9 2 1 1 3 3 3 1 Vitamin-D-receptor interacting Mediator subunit 4 COG2 PF06148.11 gi|347523761|ref|YP_004781331.1| - 0.00016 21.7 2.8 0.054 13.6 0.4 2.6 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 APG6_N PF17675.1 gi|347523761|ref|YP_004781331.1| - 0.00021 21.8 6.0 0.00056 20.4 5.3 1.9 1 1 1 2 2 2 2 Apg6 coiled-coil region YabA PF06156.13 gi|347523761|ref|YP_004781331.1| - 0.00031 21.3 2.4 0.027 15.1 2.2 2.4 1 1 0 1 1 1 1 Initiation control protein YabA BRE1 PF08647.11 gi|347523761|ref|YP_004781331.1| - 0.00031 20.7 0.1 0.00082 19.4 0.0 1.7 1 1 1 2 2 1 1 BRE1 E3 ubiquitin ligase Carbpep_Y_N PF05388.11 gi|347523761|ref|YP_004781331.1| - 0.00049 20.6 0.6 0.059 13.9 0.3 2.5 1 1 1 2 2 2 1 Carboxypeptidase Y pro-peptide DUF4200 PF13863.6 gi|347523761|ref|YP_004781331.1| - 0.00055 20.3 6.4 0.0017 18.8 6.4 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4200) ATG16 PF08614.11 gi|347523761|ref|YP_004781331.1| - 0.00071 19.8 2.5 0.0055 16.9 2.4 2.0 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.22 gi|347523761|ref|YP_004781331.1| - 0.00077 19.7 2.3 0.004 17.4 2.3 2.1 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|347523761|ref|YP_004781331.1| - 0.00077 19.7 0.0 0.0088 16.3 0.0 2.1 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) RmuC PF02646.16 gi|347523761|ref|YP_004781331.1| - 0.00079 18.6 0.9 0.46 9.6 0.0 2.2 1 1 1 2 2 2 1 RmuC family TMPIT PF07851.13 gi|347523761|ref|YP_004781331.1| - 0.00086 18.6 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 TMPIT-like protein GAS PF13851.6 gi|347523761|ref|YP_004781331.1| - 0.00087 18.7 4.0 0.0039 16.6 2.0 2.0 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding FapA PF03961.13 gi|347523761|ref|YP_004781331.1| - 0.00096 17.9 0.6 0.0013 17.5 0.6 1.2 1 0 0 1 1 1 1 Flagellar Assembly Protein A Filament PF00038.21 gi|347523761|ref|YP_004781331.1| - 0.00098 18.8 6.1 0.0056 16.3 5.4 1.9 1 1 1 2 2 2 1 Intermediate filament protein SOGA PF11365.8 gi|347523761|ref|YP_004781331.1| - 0.0011 20.1 1.1 0.0011 20.1 1.1 2.1 2 1 1 3 3 2 1 Protein SOGA KASH_CCD PF14662.6 gi|347523761|ref|YP_004781331.1| - 0.0012 18.7 3.4 0.002 18.0 3.0 1.6 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH FAM184 PF15665.5 gi|347523761|ref|YP_004781331.1| - 0.0012 18.6 2.5 0.0015 18.3 2.5 1.1 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B HAP1_N PF04849.13 gi|347523761|ref|YP_004781331.1| - 0.0013 18.1 2.1 0.0023 17.2 2.0 1.5 1 1 0 1 1 1 1 HAP1 N-terminal conserved region Lebercilin PF15619.6 gi|347523761|ref|YP_004781331.1| - 0.0013 18.5 4.6 0.0061 16.2 4.6 2.0 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease WEMBL PF05701.11 gi|347523761|ref|YP_004781331.1| - 0.0017 17.2 1.6 0.0023 16.7 1.6 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light JIP_LZII PF16471.5 gi|347523761|ref|YP_004781331.1| - 0.0017 18.5 7.6 0.0064 16.6 0.1 3.0 1 1 1 3 3 3 1 JNK-interacting protein leucine zipper II DUF3450 PF11932.8 gi|347523761|ref|YP_004781331.1| - 0.002 17.5 1.1 0.0087 15.4 0.6 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 gi|347523761|ref|YP_004781331.1| - 0.0022 18.3 0.0 0.0074 16.6 0.0 1.8 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0242 PF06785.11 gi|347523761|ref|YP_004781331.1| - 0.0022 18.1 2.8 0.0025 18.0 2.8 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF724 PF05266.14 gi|347523761|ref|YP_004781331.1| - 0.0026 17.6 1.9 0.0037 17.1 1.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF724) zf-C4H2 PF10146.9 gi|347523761|ref|YP_004781331.1| - 0.0027 18.1 3.5 0.0033 17.8 3.5 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein Spectrin PF00435.21 gi|347523761|ref|YP_004781331.1| - 0.0031 18.0 3.6 1.1 9.7 3.0 2.7 1 1 1 2 2 2 1 Spectrin repeat COG7 PF10191.9 gi|347523761|ref|YP_004781331.1| - 0.0032 15.8 0.1 0.0039 15.5 0.1 1.1 1 0 0 1 1 1 1 Golgi complex component 7 (COG7) AAA_13 PF13166.6 gi|347523761|ref|YP_004781331.1| - 0.0037 16.0 0.3 0.011 14.4 0.4 1.4 1 1 0 1 1 1 1 AAA domain DUF4201 PF13870.6 gi|347523761|ref|YP_004781331.1| - 0.0038 17.0 1.2 0.0073 16.1 1.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) DUF4618 PF15397.6 gi|347523761|ref|YP_004781331.1| - 0.0048 16.4 4.2 1.2 8.5 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) FlaC_arch PF05377.11 gi|347523761|ref|YP_004781331.1| - 0.0051 17.2 2.5 2.6 8.5 0.1 2.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) YkyA PF10368.9 gi|347523761|ref|YP_004781331.1| - 0.0063 16.2 0.1 0.0081 15.8 0.1 1.2 1 0 0 1 1 1 1 Putative cell-wall binding lipoprotein SKA2 PF16740.5 gi|347523761|ref|YP_004781331.1| - 0.0068 16.2 1.5 2.2 8.1 0.0 2.9 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 EzrA PF06160.12 gi|347523761|ref|YP_004781331.1| - 0.0068 14.6 1.6 0.015 13.5 1.6 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Sigma70_ner PF04546.13 gi|347523761|ref|YP_004781331.1| - 0.0075 16.2 2.3 0.34 10.8 0.1 2.2 1 1 1 2 2 2 1 Sigma-70, non-essential region HMMR_N PF15905.5 gi|347523761|ref|YP_004781331.1| - 0.0075 15.8 0.5 0.01 15.3 0.5 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Fib_alpha PF08702.10 gi|347523761|ref|YP_004781331.1| - 0.0077 16.4 0.9 0.26 11.5 0.4 2.0 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family bZIP_1 PF00170.21 gi|347523761|ref|YP_004781331.1| - 0.008 16.3 2.7 1.3 9.1 0.1 3.0 1 1 1 2 2 2 1 bZIP transcription factor Vps51 PF08700.11 gi|347523761|ref|YP_004781331.1| - 0.0085 16.1 0.4 3.7 7.7 0.1 2.5 1 1 1 2 2 2 0 Vps51/Vps67 TBCA PF02970.16 gi|347523761|ref|YP_004781331.1| - 0.0087 16.4 2.2 2.9 8.3 0.0 2.3 1 1 1 2 2 2 0 Tubulin binding cofactor A TetR_C_15 PF17918.1 gi|347523761|ref|YP_004781331.1| - 0.0087 16.8 3.1 0.0091 16.7 0.9 2.1 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain DUF2968 PF11180.8 gi|347523761|ref|YP_004781331.1| - 0.0095 15.6 1.0 0.22 11.1 1.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF2968) DUF4795 PF16043.5 gi|347523761|ref|YP_004781331.1| - 0.0095 15.6 5.9 0.026 14.1 3.2 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4795) Sec34 PF04136.15 gi|347523761|ref|YP_004781331.1| - 0.01 15.8 0.0 0.75 9.7 0.1 2.1 1 1 1 2 2 2 1 Sec34-like family OmpH PF03938.14 gi|347523761|ref|YP_004781331.1| - 0.011 16.1 1.2 0.052 13.9 0.6 2.0 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF4763 PF15960.5 gi|347523761|ref|YP_004781331.1| - 0.011 15.1 0.1 0.04 13.2 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) SlyX PF04102.12 gi|347523761|ref|YP_004781331.1| - 0.012 16.3 7.8 2.3 8.9 5.1 3.1 1 1 3 4 4 4 0 SlyX DUF812 PF05667.11 gi|347523761|ref|YP_004781331.1| - 0.013 14.5 5.8 0.021 13.8 5.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF2730 PF10805.8 gi|347523761|ref|YP_004781331.1| - 0.013 15.5 1.5 2.5 8.2 0.2 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Atg14 PF10186.9 gi|347523761|ref|YP_004781331.1| - 0.014 14.5 1.0 0.017 14.3 1.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ZapB PF06005.12 gi|347523761|ref|YP_004781331.1| - 0.017 15.6 10.9 0.26 11.8 0.1 3.1 1 1 1 2 2 2 0 Cell division protein ZapB Tektin PF03148.14 gi|347523761|ref|YP_004781331.1| - 0.02 13.7 7.1 0.62 8.7 4.0 2.1 1 1 0 2 2 2 0 Tektin family PI3K_P85_iSH2 PF16454.5 gi|347523761|ref|YP_004781331.1| - 0.02 14.5 1.0 0.03 13.9 1.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TPR_MLP1_2 PF07926.12 gi|347523761|ref|YP_004781331.1| - 0.02 14.9 0.4 0.054 13.5 0.4 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein HAUS-augmin3 PF14932.6 gi|347523761|ref|YP_004781331.1| - 0.021 14.4 1.1 0.043 13.4 0.6 1.6 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Bacillus_HBL PF05791.11 gi|347523761|ref|YP_004781331.1| - 0.022 14.6 0.0 0.63 9.8 0.0 2.0 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) MCPsignal PF00015.21 gi|347523761|ref|YP_004781331.1| - 0.025 14.4 0.1 0.035 13.9 0.1 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain CALCOCO1 PF07888.11 gi|347523761|ref|YP_004781331.1| - 0.025 13.5 8.4 0.061 12.2 8.4 1.5 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Laminin_II PF06009.12 gi|347523761|ref|YP_004781331.1| - 0.026 14.6 0.1 0.15 12.0 0.0 2.0 1 1 0 1 1 1 0 Laminin Domain II DUF5082 PF16888.5 gi|347523761|ref|YP_004781331.1| - 0.032 14.5 0.9 7.5 6.9 0.1 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) CtIP_N PF10482.9 gi|347523761|ref|YP_004781331.1| - 0.032 14.3 4.3 1 9.4 1.2 2.4 1 1 1 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain Zwint PF15556.6 gi|347523761|ref|YP_004781331.1| - 0.034 13.6 3.1 0.12 11.8 3.0 1.7 1 1 0 1 1 1 0 ZW10 interactor TMF_DNA_bd PF12329.8 gi|347523761|ref|YP_004781331.1| - 0.035 14.1 2.2 0.16 12.0 0.3 2.6 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding Kre28 PF17097.5 gi|347523761|ref|YP_004781331.1| - 0.036 13.0 0.2 0.058 12.3 0.2 1.3 1 1 0 1 1 1 0 Spindle pole body component DLP_helical PF18709.1 gi|347523761|ref|YP_004781331.1| - 0.041 13.1 1.5 0.76 8.9 0.6 2.2 1 1 1 2 2 2 0 Dynamin-like helical domain Jnk-SapK_ap_N PF09744.9 gi|347523761|ref|YP_004781331.1| - 0.041 14.1 8.8 0.11 12.7 8.8 1.7 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 CP12 PF02672.15 gi|347523761|ref|YP_004781331.1| - 0.043 14.6 0.3 0.24 12.2 0.0 2.2 1 1 1 2 2 2 0 CP12 domain Cnn_1N PF07989.11 gi|347523761|ref|YP_004781331.1| - 0.043 14.0 5.6 1.7 8.9 0.1 2.7 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 Taxilin PF09728.9 gi|347523761|ref|YP_004781331.1| - 0.045 12.9 4.0 0.54 9.4 4.1 1.8 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Fez1 PF06818.15 gi|347523761|ref|YP_004781331.1| - 0.045 14.2 4.5 0.094 13.2 4.5 1.6 1 1 0 1 1 1 0 Fez1 WXG100 PF06013.12 gi|347523761|ref|YP_004781331.1| - 0.059 13.6 0.7 9.4 6.6 0.0 2.6 1 1 1 2 2 2 0 Proteins of 100 residues with WXG HisKA_3 PF07730.13 gi|347523761|ref|YP_004781331.1| - 0.066 13.7 10.3 3 8.4 0.1 3.9 1 1 3 4 4 4 0 Histidine kinase Macoilin PF09726.9 gi|347523761|ref|YP_004781331.1| - 0.067 11.8 1.8 1.8 7.0 0.0 2.0 1 1 1 2 2 2 0 Macoilin family Occludin_ELL PF07303.13 gi|347523761|ref|YP_004781331.1| - 0.068 13.9 1.1 7.4 7.4 0.5 2.6 1 1 1 2 2 2 0 Occludin homology domain DivIVA PF05103.13 gi|347523761|ref|YP_004781331.1| - 0.071 13.2 1.7 3.7 7.6 0.0 2.7 1 1 2 3 3 3 0 DivIVA protein Prefoldin_2 PF01920.20 gi|347523761|ref|YP_004781331.1| - 0.072 13.0 4.9 8.1 6.5 1.3 2.9 1 1 2 3 3 3 0 Prefoldin subunit IFT57 PF10498.9 gi|347523761|ref|YP_004781331.1| - 0.073 12.0 2.2 0.14 11.1 2.2 1.5 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Lectin_N PF03954.14 gi|347523761|ref|YP_004781331.1| - 0.076 12.8 0.1 3.1 7.6 0.1 2.1 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain SAM_KSR1 PF13543.6 gi|347523761|ref|YP_004781331.1| - 0.076 13.2 1.9 1.6 8.9 0.5 2.4 2 1 0 2 2 2 0 SAM like domain present in kinase suppressor RAS 1 DUF16 PF01519.16 gi|347523761|ref|YP_004781331.1| - 0.079 13.4 0.9 0.27 11.7 0.9 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 ADIP PF11559.8 gi|347523761|ref|YP_004781331.1| - 0.085 12.9 1.3 0.44 10.6 0.6 1.9 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding CENP-H PF05837.12 gi|347523761|ref|YP_004781331.1| - 0.088 13.2 1.9 0.25 11.7 1.9 1.9 1 1 0 1 1 1 0 Centromere protein H (CENP-H) NBD94 PF16830.5 gi|347523761|ref|YP_004781331.1| - 0.094 13.1 0.9 1.2 9.5 0.1 2.7 1 1 2 3 3 3 0 Nucleotide-Binding Domain 94 of RH CorA PF01544.18 gi|347523761|ref|YP_004781331.1| - 0.094 12.0 5.9 0.091 12.1 1.2 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein TACC_C PF05010.14 gi|347523761|ref|YP_004781331.1| - 0.094 12.5 3.7 0.15 11.8 3.4 1.5 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ERM PF00769.19 gi|347523761|ref|YP_004781331.1| - 0.096 12.5 8.9 0.12 12.2 8.9 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family TolA_bind_tri PF16331.5 gi|347523761|ref|YP_004781331.1| - 0.097 12.8 5.3 1.3 9.1 1.5 2.6 1 1 0 2 2 2 0 TolA binding protein trimerisation DUF4140 PF13600.6 gi|347523761|ref|YP_004781331.1| - 0.1 13.0 3.0 1.9 8.9 1.2 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Cauli_AT PF03233.13 gi|347523761|ref|YP_004781331.1| - 0.11 12.4 0.6 0.87 9.5 0.1 2.0 1 1 1 2 2 2 0 Aphid transmission protein COG6 PF06419.11 gi|347523761|ref|YP_004781331.1| - 0.12 10.6 0.6 0.15 10.2 0.6 1.2 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 Baculo_PEP_C PF04513.12 gi|347523761|ref|YP_004781331.1| - 0.12 12.4 0.0 0.35 10.9 0.0 1.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus RRF PF01765.19 gi|347523761|ref|YP_004781331.1| - 0.15 12.1 2.1 0.2 11.6 1.4 1.6 1 1 0 1 1 1 0 Ribosome recycling factor BicD PF09730.9 gi|347523761|ref|YP_004781331.1| - 0.18 10.2 6.2 0.24 9.8 6.2 1.2 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Nmad5 PF18757.1 gi|347523761|ref|YP_004781331.1| - 0.21 11.8 3.3 3.4 7.8 1.5 2.3 1 1 2 3 3 3 0 Nucleotide modification associated domain 5 DUF334 PF03904.13 gi|347523761|ref|YP_004781331.1| - 0.22 11.0 5.3 0.31 10.5 4.9 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF334) H-kinase_dim PF02895.14 gi|347523761|ref|YP_004781331.1| - 0.24 11.8 2.9 1.7 9.1 0.0 2.4 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain SidE PF12252.8 gi|347523761|ref|YP_004781331.1| - 0.29 8.6 1.4 0.32 8.5 1.4 1.1 1 0 0 1 1 1 0 Dot/Icm substrate protein HAUS6_N PF14661.6 gi|347523761|ref|YP_004781331.1| - 0.35 10.4 3.9 0.7 9.4 3.9 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DUF641 PF04859.12 gi|347523761|ref|YP_004781331.1| - 0.36 11.2 3.4 2.4 8.5 3.4 2.0 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) Rx_N PF18052.1 gi|347523761|ref|YP_004781331.1| - 0.4 11.0 5.8 1.5e+02 2.7 5.8 2.9 1 1 0 1 1 1 0 Rx N-terminal domain DUF4530 PF15039.6 gi|347523761|ref|YP_004781331.1| - 0.54 10.4 6.6 13 5.9 1.9 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4530) HIP1_clath_bdg PF16515.5 gi|347523761|ref|YP_004781331.1| - 0.54 10.9 4.9 5.8 7.6 4.9 2.3 1 1 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 CCDC85 PF10226.9 gi|347523761|ref|YP_004781331.1| - 0.55 9.9 10.2 0.78 9.4 10.2 1.2 1 0 0 1 1 1 0 CCDC85 family DUF2205 PF10224.9 gi|347523761|ref|YP_004781331.1| - 0.56 10.2 3.4 5.8 7.0 0.0 2.5 1 1 0 2 2 2 0 Short coiled-coil protein TSC22 PF01166.18 gi|347523761|ref|YP_004781331.1| - 1.1 9.6 0.1 1.1 9.6 0.1 3.7 2 1 3 5 5 4 0 TSC-22/dip/bun family Rootletin PF15035.6 gi|347523761|ref|YP_004781331.1| - 1.2 9.1 10.1 2.7 8.0 10.2 1.6 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF5595 PF18077.1 gi|347523761|ref|YP_004781331.1| - 1.3 9.1 9.6 0.21 11.7 3.1 2.7 3 1 1 4 4 3 0 Domain of unknown function (DUF5595) PEARLI-4 PF05278.12 gi|347523761|ref|YP_004781331.1| - 2.2 7.8 9.5 2.8 7.5 9.5 1.2 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) CCDC73 PF15818.5 gi|347523761|ref|YP_004781331.1| - 5.9 4.6 6.4 3.5 5.4 3.6 1.7 1 1 0 2 2 2 0 Coiled-coil domain-containing protein 73 family Cep57_CLD_2 PF14197.6 gi|347523761|ref|YP_004781331.1| - 7.3 6.8 10.6 24 5.1 0.2 2.6 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 Methyltransf_25 PF13649.6 gi|347523762|ref|YP_004781332.1| - 3.4e-05 24.5 0.0 0.00042 21.0 0.0 2.5 2 1 1 3 3 3 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|347523762|ref|YP_004781332.1| - 9.3e-05 22.1 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_30 PF05430.11 gi|347523762|ref|YP_004781332.1| - 0.0016 18.3 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.12 gi|347523762|ref|YP_004781332.1| - 0.0025 18.4 0.0 0.051 14.2 0.0 2.8 1 1 1 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|347523762|ref|YP_004781332.1| - 0.022 14.2 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2795 PF11387.8 gi|347523762|ref|YP_004781332.1| - 0.12 12.6 0.1 0.25 11.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2795) Met_10 PF02475.16 gi|347523762|ref|YP_004781332.1| - 0.22 11.3 0.0 0.41 10.3 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein RHH_5 PF07878.11 gi|347523763|ref|YP_004781333.1| - 2.6e-07 30.4 0.0 6.8e-07 29.1 0.0 1.8 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Sigma70_ner PF04546.13 gi|347523763|ref|YP_004781333.1| - 0.0014 18.6 3.9 0.0018 18.2 3.9 1.2 1 0 0 1 1 1 1 Sigma-70, non-essential region DUF4618 PF15397.6 gi|347523763|ref|YP_004781333.1| - 0.0026 17.2 0.8 0.0029 17.1 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) TolA_bind_tri PF16331.5 gi|347523763|ref|YP_004781333.1| - 0.0078 16.3 1.9 0.016 15.3 1.9 1.6 1 0 0 1 1 1 1 TolA binding protein trimerisation Dynactin_p22 PF07426.11 gi|347523763|ref|YP_004781333.1| - 0.0092 15.8 1.2 0.032 14.1 1.2 1.8 1 1 1 2 2 2 1 Dynactin subunit p22 Fib_alpha PF08702.10 gi|347523763|ref|YP_004781333.1| - 0.011 16.0 0.4 0.015 15.5 0.4 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family GyrB_insert PF18053.1 gi|347523763|ref|YP_004781333.1| - 0.013 15.4 1.0 0.019 14.9 1.0 1.2 1 0 0 1 1 1 0 DNA gyrase B subunit insert domain RHH_1 PF01402.21 gi|347523763|ref|YP_004781333.1| - 0.017 15.1 0.1 0.017 15.1 0.1 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family FAM184 PF15665.5 gi|347523763|ref|YP_004781333.1| - 0.022 14.5 6.2 0.029 14.2 6.2 1.2 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B EMP24_GP25L PF01105.24 gi|347523763|ref|YP_004781333.1| - 0.06 13.3 1.2 0.089 12.7 1.2 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF1664 PF07889.12 gi|347523763|ref|YP_004781333.1| - 0.065 13.3 1.1 0.099 12.7 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Cnn_1N PF07989.11 gi|347523763|ref|YP_004781333.1| - 0.097 12.8 4.3 2.2 8.5 0.5 2.2 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 FlaC_arch PF05377.11 gi|347523763|ref|YP_004781333.1| - 0.21 12.0 2.6 0.73 10.3 2.6 2.0 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Phasin PF05597.11 gi|347523763|ref|YP_004781333.1| - 0.35 10.9 5.7 0.57 10.2 5.6 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Jnk-SapK_ap_N PF09744.9 gi|347523763|ref|YP_004781333.1| - 0.58 10.4 10.7 0.91 9.7 10.7 1.3 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 RHH_1 PF01402.21 gi|347523764|ref|YP_004781334.1| - 5.3e-10 38.9 1.3 7.3e-10 38.4 1.3 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|347523764|ref|YP_004781334.1| - 2.3e-07 30.6 1.3 3.1e-07 30.2 1.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|347523764|ref|YP_004781334.1| - 0.0019 18.0 2.5 0.0026 17.6 2.5 1.4 1 1 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB PSK_trans_fac PF07704.11 gi|347523764|ref|YP_004781334.1| - 0.0046 17.7 0.2 0.0051 17.5 0.2 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor CopG_antitoxin PF12441.8 gi|347523764|ref|YP_004781334.1| - 0.046 14.3 0.1 0.057 14.0 0.1 1.1 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system GPW_gp25 PF04965.14 gi|347523764|ref|YP_004781334.1| - 0.11 12.3 0.3 0.12 12.1 0.3 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme Peripla_BP_2 PF01497.18 gi|347523765|ref|YP_004781335.1| - 3.8e-11 43.0 0.0 4.1e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF4427 PF14468.6 gi|347523767|ref|YP_004781337.1| - 0.1 12.7 0.0 0.1 12.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4427) AAA_21 PF13304.6 gi|347523769|ref|YP_004781339.1| - 5e-21 75.8 0.3 3.1e-12 46.9 0.6 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|347523769|ref|YP_004781339.1| - 2.2e-15 57.2 0.0 2.6e-09 37.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|347523769|ref|YP_004781339.1| - 1.7e-09 37.5 0.0 8.4e-09 35.2 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|347523769|ref|YP_004781339.1| - 8.9e-09 36.1 0.0 1.2e-08 35.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.8 gi|347523769|ref|YP_004781339.1| - 0.011 15.0 0.2 0.73 9.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|347523769|ref|YP_004781339.1| - 0.026 14.3 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3037 PF11236.8 gi|347523770|ref|YP_004781340.1| - 0.058 13.8 0.0 0.097 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3037) GIDA PF01134.22 gi|347523770|ref|YP_004781340.1| - 0.16 11.0 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A DUF4352 PF11611.8 gi|347523771|ref|YP_004781341.1| - 9.2e-11 42.1 0.1 1.7e-09 38.0 0.1 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) TNFR_16_TM PF18422.1 gi|347523771|ref|YP_004781341.1| - 0.39 10.7 5.0 0.13 12.3 0.9 2.3 1 1 1 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain DUF104 PF01954.16 gi|347523772|ref|YP_004781342.1| - 6e-14 52.2 0.6 6.6e-14 52.1 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF3701 PF12482.8 gi|347523772|ref|YP_004781342.1| - 0.082 13.0 0.0 0.091 12.8 0.0 1.0 1 0 0 1 1 1 0 Phage integrase protein DUF433 PF04255.14 gi|347523773|ref|YP_004781343.1| - 4.2e-05 23.3 0.0 5.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) HTH_23 PF13384.6 gi|347523773|ref|YP_004781343.1| - 0.001 18.8 0.0 0.0028 17.4 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.12 gi|347523773|ref|YP_004781343.1| - 0.038 13.9 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4_2 PF08281.12 gi|347523773|ref|YP_004781343.1| - 0.054 13.2 0.2 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 DUF5338 PF17273.2 gi|347523773|ref|YP_004781343.1| - 0.054 13.6 0.1 0.11 12.6 0.1 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5338) GerE PF00196.19 gi|347523773|ref|YP_004781343.1| - 0.079 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|347523773|ref|YP_004781343.1| - 0.087 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Apolipoprotein PF01442.18 gi|347523774|ref|YP_004781344.1| - 7.2e-10 39.1 10.6 7.7e-10 38.9 9.2 1.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain HSBP1 PF06825.12 gi|347523774|ref|YP_004781344.1| - 1.3e-09 37.8 25.7 0.00015 21.5 2.0 5.7 1 1 3 4 4 4 1 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|347523774|ref|YP_004781344.1| - 2.7e-09 37.1 16.6 7.8e-06 26.1 1.8 3.3 1 1 3 4 4 4 3 Bacterial protein of unknown function (DUF948) ApoLp-III PF07464.11 gi|347523774|ref|YP_004781344.1| - 3.6e-08 33.6 4.3 7.4e-05 22.9 1.2 2.6 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) Baculo_PEP_C PF04513.12 gi|347523774|ref|YP_004781344.1| - 4.5e-08 33.2 3.1 0.00043 20.4 2.2 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus FliD_C PF07195.12 gi|347523774|ref|YP_004781344.1| - 4.6e-08 32.8 10.1 0.014 14.9 0.4 3.1 1 1 2 3 3 3 3 Flagellar hook-associated protein 2 C-terminus DUF1664 PF07889.12 gi|347523774|ref|YP_004781344.1| - 1.6e-07 31.4 15.3 0.043 13.9 11.4 3.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) KMP11 PF03037.16 gi|347523774|ref|YP_004781344.1| - 2.1e-07 31.6 6.9 0.042 14.6 1.3 3.5 1 1 2 3 3 3 2 Kinetoplastid membrane protein 11 Laminin_II PF06009.12 gi|347523774|ref|YP_004781344.1| - 2.2e-06 27.7 12.1 0.00062 19.8 8.8 2.5 1 1 1 2 2 2 1 Laminin Domain II AAA_13 PF13166.6 gi|347523774|ref|YP_004781344.1| - 3.1e-06 26.2 14.3 6.9e-06 25.0 14.3 1.5 1 1 0 1 1 1 1 AAA domain NPV_P10 PF05531.12 gi|347523774|ref|YP_004781344.1| - 4.9e-06 26.9 6.9 0.00084 19.8 2.2 3.3 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein Mitofilin PF09731.9 gi|347523774|ref|YP_004781344.1| - 1.1e-05 24.6 11.3 1.4e-05 24.1 11.3 1.2 1 0 0 1 1 1 1 Mitochondrial inner membrane protein HalX PF08663.10 gi|347523774|ref|YP_004781344.1| - 8.3e-05 22.8 20.3 0.15 12.4 6.5 4.8 1 1 2 3 3 3 1 HalX domain ABC_tran_CTD PF16326.5 gi|347523774|ref|YP_004781344.1| - 0.00011 22.4 9.7 0.0035 17.6 0.4 3.7 1 1 3 4 4 4 2 ABC transporter C-terminal domain CdvA PF18822.1 gi|347523774|ref|YP_004781344.1| - 0.00011 22.0 21.5 0.011 15.6 3.7 4.0 1 1 2 3 3 3 2 CdvA-like coiled-coil domain Phage_Mu_Gam PF07352.12 gi|347523774|ref|YP_004781344.1| - 0.00013 21.9 12.3 0.2 11.6 4.7 3.2 1 1 2 3 3 3 1 Bacteriophage Mu Gam like protein Exonuc_VII_L PF02601.15 gi|347523774|ref|YP_004781344.1| - 0.00017 21.3 13.0 0.0052 16.4 13.0 2.0 1 1 0 1 1 1 1 Exonuclease VII, large subunit Sec5 PF15469.6 gi|347523774|ref|YP_004781344.1| - 0.0002 21.2 12.1 0.039 13.8 11.9 2.9 1 1 0 1 1 1 1 Exocyst complex component Sec5 Spectrin PF00435.21 gi|347523774|ref|YP_004781344.1| - 0.00028 21.3 8.6 0.0038 17.7 2.7 2.4 1 1 1 2 2 2 1 Spectrin repeat OrfB_IS605 PF01385.19 gi|347523774|ref|YP_004781344.1| - 0.0003 21.0 17.5 0.0016 18.7 2.0 3.8 1 1 3 4 4 4 1 Probable transposase Prefoldin_2 PF01920.20 gi|347523774|ref|YP_004781344.1| - 0.0003 20.7 11.9 0.0042 17.0 0.8 3.8 1 1 3 4 4 4 2 Prefoldin subunit TPR_MLP1_2 PF07926.12 gi|347523774|ref|YP_004781344.1| - 0.0003 20.8 13.1 0.0064 16.5 1.5 3.0 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein KxDL PF10241.9 gi|347523774|ref|YP_004781344.1| - 0.00038 20.7 12.0 0.022 15.1 2.5 3.2 1 1 2 3 3 3 2 Uncharacterized conserved protein Lipoprotein_7 PF01540.16 gi|347523774|ref|YP_004781344.1| - 0.0004 19.8 11.9 0.00095 18.5 1.9 2.0 1 1 1 2 2 2 1 Adhesin lipoprotein Prominin PF05478.11 gi|347523774|ref|YP_004781344.1| - 0.0004 18.5 6.3 0.00058 18.0 6.3 1.2 1 0 0 1 1 1 1 Prominin SlyX PF04102.12 gi|347523774|ref|YP_004781344.1| - 0.00041 20.9 11.9 0.33 11.6 0.9 3.9 1 1 2 3 3 3 2 SlyX Muted PF14942.6 gi|347523774|ref|YP_004781344.1| - 0.00045 20.6 15.8 0.054 13.9 15.4 2.4 1 1 0 1 1 1 1 Organelle biogenesis, Muted-like protein Mt_ATP-synt_D PF05873.12 gi|347523774|ref|YP_004781344.1| - 0.00049 20.0 6.8 0.12 12.2 0.8 3.6 1 1 3 4 4 4 1 ATP synthase D chain, mitochondrial (ATP5H) DUF3584 PF12128.8 gi|347523774|ref|YP_004781344.1| - 0.00051 17.7 16.0 0.00086 17.0 16.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) MCPsignal PF00015.21 gi|347523774|ref|YP_004781344.1| - 0.00052 19.9 7.1 0.016 15.0 2.4 2.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain MukF_M PF17192.4 gi|347523774|ref|YP_004781344.1| - 0.00053 19.8 6.7 0.0011 18.8 3.4 2.2 1 1 1 2 2 2 1 MukF middle domain V_ATPase_I PF01496.19 gi|347523774|ref|YP_004781344.1| - 0.00057 18.0 3.8 0.00057 18.0 3.8 1.9 1 1 1 2 2 2 1 V-type ATPase 116kDa subunit family RmuC PF02646.16 gi|347523774|ref|YP_004781344.1| - 0.00058 19.1 9.3 0.072 12.2 2.9 3.0 1 1 2 3 3 3 2 RmuC family DUF4795 PF16043.5 gi|347523774|ref|YP_004781344.1| - 0.00064 19.4 17.9 0.058 13.0 9.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) DUF4407 PF14362.6 gi|347523774|ref|YP_004781344.1| - 0.00073 19.0 9.5 0.0026 17.2 9.5 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) Phasin PF05597.11 gi|347523774|ref|YP_004781344.1| - 0.00084 19.3 13.3 0.1 12.6 0.9 2.6 1 1 1 2 2 2 2 Poly(hydroxyalcanoate) granule associated protein (phasin) Gp58 PF07902.11 gi|347523774|ref|YP_004781344.1| - 0.00088 17.7 4.7 0.0015 16.9 4.6 1.4 1 1 0 1 1 1 1 gp58-like protein Transcrip_act PF04949.13 gi|347523774|ref|YP_004781344.1| - 0.0009 19.2 27.2 0.0089 15.9 9.9 3.1 1 1 2 3 3 3 1 Transcriptional activator DUF148 PF02520.17 gi|347523774|ref|YP_004781344.1| - 0.0012 18.9 5.7 0.16 12.1 0.6 2.7 1 1 2 3 3 3 2 Domain of unknown function DUF148 Nup54 PF13874.6 gi|347523774|ref|YP_004781344.1| - 0.0012 18.9 9.4 0.0012 18.9 9.4 1.8 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 TMPIT PF07851.13 gi|347523774|ref|YP_004781344.1| - 0.0013 18.1 8.3 0.0022 17.3 1.7 2.1 1 1 1 2 2 2 1 TMPIT-like protein YtxH PF12732.7 gi|347523774|ref|YP_004781344.1| - 0.0015 19.0 5.6 2.6 8.6 5.6 3.2 1 1 0 1 1 1 0 YtxH-like protein Spc7 PF08317.11 gi|347523774|ref|YP_004781344.1| - 0.0016 17.4 18.7 0.014 14.3 7.7 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein Snapin_Pallidin PF14712.6 gi|347523774|ref|YP_004781344.1| - 0.0016 18.8 18.1 0.016 15.6 4.2 3.4 1 1 2 3 3 3 1 Snapin/Pallidin DUF4455 PF14643.6 gi|347523774|ref|YP_004781344.1| - 0.0016 17.2 10.7 0.021 13.5 0.5 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4455) MscS_porin PF12795.7 gi|347523774|ref|YP_004781344.1| - 0.0017 18.0 8.4 0.037 13.6 8.5 2.5 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain Filament PF00038.21 gi|347523774|ref|YP_004781344.1| - 0.002 17.8 17.3 0.0068 16.0 6.4 2.3 1 1 1 2 2 2 1 Intermediate filament protein Rab5-bind PF09311.11 gi|347523774|ref|YP_004781344.1| - 0.002 17.6 16.3 0.053 12.9 9.0 2.2 1 1 1 2 2 2 2 Rabaptin-like protein Fzo_mitofusin PF04799.13 gi|347523774|ref|YP_004781344.1| - 0.0022 17.6 10.7 0.35 10.4 0.6 3.3 1 1 1 2 2 2 1 fzo-like conserved region IFT57 PF10498.9 gi|347523774|ref|YP_004781344.1| - 0.0024 16.9 7.1 0.0024 16.9 7.1 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 YlqD PF11068.8 gi|347523774|ref|YP_004781344.1| - 0.0026 18.1 7.9 0.28 11.6 0.5 2.3 1 1 1 2 2 2 2 YlqD protein Prefoldin PF02996.17 gi|347523774|ref|YP_004781344.1| - 0.0027 17.6 12.3 0.097 12.6 0.8 4.0 1 1 3 4 4 4 1 Prefoldin subunit DUF2802 PF10975.8 gi|347523774|ref|YP_004781344.1| - 0.0028 17.8 5.9 73 3.6 5.9 4.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) Tropomyosin_1 PF12718.7 gi|347523774|ref|YP_004781344.1| - 0.0028 17.8 20.9 0.0044 17.2 12.9 2.1 1 1 1 2 2 2 1 Tropomyosin like Fib_alpha PF08702.10 gi|347523774|ref|YP_004781344.1| - 0.0028 17.8 18.3 0.033 14.4 4.1 2.2 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family DUF1351 PF07083.11 gi|347523774|ref|YP_004781344.1| - 0.0035 17.2 12.7 0.34 10.7 4.9 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF1351) Syntaxin_2 PF14523.6 gi|347523774|ref|YP_004781344.1| - 0.0044 17.3 15.4 0.74 10.2 2.4 3.2 1 1 1 2 2 2 1 Syntaxin-like protein ANAPC4 PF12896.7 gi|347523774|ref|YP_004781344.1| - 0.0044 16.5 3.2 0.36 10.3 0.2 2.9 1 1 2 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 4 Syntaxin PF00804.25 gi|347523774|ref|YP_004781344.1| - 0.0048 16.6 19.8 0.058 13.1 8.9 2.1 1 1 1 2 2 2 2 Syntaxin DUF2884 PF11101.8 gi|347523774|ref|YP_004781344.1| - 0.005 16.4 5.0 0.041 13.4 4.9 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2884) RPW8 PF05659.11 gi|347523774|ref|YP_004781344.1| - 0.0055 16.4 13.1 0.082 12.6 2.8 3.3 1 1 2 3 3 3 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF4618 PF15397.6 gi|347523774|ref|YP_004781344.1| - 0.0066 15.9 12.7 0.14 11.6 12.7 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) TMF_DNA_bd PF12329.8 gi|347523774|ref|YP_004781344.1| - 0.0075 16.2 16.4 0.47 10.5 2.9 4.2 2 2 2 4 4 4 1 TATA element modulatory factor 1 DNA binding BLOC1_2 PF10046.9 gi|347523774|ref|YP_004781344.1| - 0.0079 16.5 9.7 0.37 11.1 3.9 3.1 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 gi|347523774|ref|YP_004781344.1| - 0.0087 16.3 18.5 0.018 15.2 8.1 2.5 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain T3SSipB PF16535.5 gi|347523774|ref|YP_004781344.1| - 0.0099 16.4 0.0 5.4 7.5 0.0 2.4 1 1 1 2 2 2 0 Type III cell invasion protein SipB DLP_helical PF18709.1 gi|347523774|ref|YP_004781344.1| - 0.011 15.0 12.1 0.027 13.7 12.2 1.9 1 1 0 1 1 1 0 Dynamin-like helical domain Zw10 PF06248.13 gi|347523774|ref|YP_004781344.1| - 0.012 14.3 11.4 0.025 13.2 2.2 2.2 1 1 1 2 2 2 0 Centromere/kinetochore Zw10 BshC PF10079.9 gi|347523774|ref|YP_004781344.1| - 0.012 14.4 11.3 0.083 11.6 3.0 2.0 1 1 1 2 2 2 0 Bacillithiol biosynthesis BshC MobC PF05713.11 gi|347523774|ref|YP_004781344.1| - 0.013 15.9 6.6 9 6.9 0.7 4.8 2 2 3 5 5 4 0 Bacterial mobilisation protein (MobC) PEPcase PF00311.17 gi|347523774|ref|YP_004781344.1| - 0.013 13.6 3.9 0.017 13.2 3.9 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase DUF5082 PF16888.5 gi|347523774|ref|YP_004781344.1| - 0.014 15.7 19.4 0.21 11.9 14.9 3.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF1043 PF06295.12 gi|347523774|ref|YP_004781344.1| - 0.015 15.3 1.2 0.96 9.5 0.9 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) Phage_GPO PF05929.11 gi|347523774|ref|YP_004781344.1| - 0.015 14.9 3.8 1.9 8.0 0.4 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase KfrA_N PF11740.8 gi|347523774|ref|YP_004781344.1| - 0.015 15.9 2.1 7.6 7.3 0.2 3.1 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term DUF883 PF05957.13 gi|347523774|ref|YP_004781344.1| - 0.018 15.7 11.4 0.42 11.3 3.2 3.2 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Lebercilin PF15619.6 gi|347523774|ref|YP_004781344.1| - 0.018 14.7 20.7 1.4 8.5 5.1 3.1 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DinI PF06183.13 gi|347523774|ref|YP_004781344.1| - 0.02 15.2 9.9 1.7 9.0 1.0 5.3 1 1 3 4 4 3 0 DinI-like family Fibritin_C PF07921.12 gi|347523774|ref|YP_004781344.1| - 0.023 14.8 0.7 0.15 12.2 1.1 2.0 2 0 0 2 2 1 0 Fibritin C-terminal region FPP PF05911.11 gi|347523774|ref|YP_004781344.1| - 0.024 12.8 13.8 0.063 11.5 2.0 2.2 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil HMMR_N PF15905.5 gi|347523774|ref|YP_004781344.1| - 0.025 14.1 17.4 0.083 12.4 6.9 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Fmp27_WPPW PF10359.9 gi|347523774|ref|YP_004781344.1| - 0.026 13.4 19.3 0.41 9.4 9.1 2.4 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF745 PF05335.13 gi|347523774|ref|YP_004781344.1| - 0.028 14.1 3.0 0.95 9.2 0.3 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF745) DUF2959 PF11172.8 gi|347523774|ref|YP_004781344.1| - 0.028 14.6 11.7 1.1 9.4 1.7 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) Atg14 PF10186.9 gi|347523774|ref|YP_004781344.1| - 0.028 13.5 17.7 0.013 14.6 12.5 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF16 PF01519.16 gi|347523774|ref|YP_004781344.1| - 0.029 14.8 14.8 18 5.9 14.7 2.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 HIP1_clath_bdg PF16515.5 gi|347523774|ref|YP_004781344.1| - 0.031 14.9 13.2 1.5 9.5 4.0 2.9 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 PIN_8 PF18476.1 gi|347523774|ref|YP_004781344.1| - 0.032 14.1 12.9 0.25 11.2 12.9 2.0 1 1 0 1 1 1 0 PIN like domain FadA PF09403.10 gi|347523774|ref|YP_004781344.1| - 0.032 14.7 9.5 3.9 8.0 3.1 3.6 1 1 1 2 2 2 0 Adhesion protein FadA DUF5446 PF17522.2 gi|347523774|ref|YP_004781344.1| - 0.033 14.3 24.1 0.18 12.0 6.2 3.9 1 1 3 4 4 4 0 Family of unknown function (DUF5446) CagA PF03507.13 gi|347523774|ref|YP_004781344.1| - 0.034 14.1 2.3 0.29 11.1 0.2 2.1 1 1 1 2 2 2 0 CagA exotoxin ARGLU PF15346.6 gi|347523774|ref|YP_004781344.1| - 0.035 14.0 34.8 26 4.6 30.7 3.0 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 LUC7 PF03194.15 gi|347523774|ref|YP_004781344.1| - 0.035 13.8 20.4 0.64 9.6 9.0 2.9 1 1 2 3 3 3 0 LUC7 N_terminus GldM_N PF12081.8 gi|347523774|ref|YP_004781344.1| - 0.036 14.2 3.7 0.43 10.6 3.6 2.2 1 1 0 1 1 1 0 GldM N-terminal domain DUF3450 PF11932.8 gi|347523774|ref|YP_004781344.1| - 0.036 13.4 13.3 0.096 12.0 6.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) FAM76 PF16046.5 gi|347523774|ref|YP_004781344.1| - 0.037 13.4 13.5 0.15 11.4 2.5 2.1 1 1 1 2 2 2 0 FAM76 protein AAA_32 PF13654.6 gi|347523774|ref|YP_004781344.1| - 0.037 12.8 14.9 0.19 10.4 7.1 2.5 1 1 1 2 2 2 0 AAA domain T3SS_needle_F PF09392.10 gi|347523774|ref|YP_004781344.1| - 0.042 14.1 0.4 16 5.8 0.0 3.6 2 2 2 4 4 3 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF COG5 PF10392.9 gi|347523774|ref|YP_004781344.1| - 0.042 14.0 11.7 0.081 13.1 5.0 2.6 1 1 2 3 3 3 0 Golgi transport complex subunit 5 FUSC PF04632.12 gi|347523774|ref|YP_004781344.1| - 0.043 12.4 1.1 0.09 11.3 1.0 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein family Rad50_zn_hook PF04423.14 gi|347523774|ref|YP_004781344.1| - 0.045 13.6 10.0 8.1 6.4 0.2 6.3 1 1 6 7 7 5 0 Rad50 zinc hook motif Swi5 PF07061.11 gi|347523774|ref|YP_004781344.1| - 0.046 13.8 10.2 0.3 11.2 1.1 4.3 1 1 3 4 4 4 0 Swi5 FemAB PF02388.16 gi|347523774|ref|YP_004781344.1| - 0.047 12.6 11.6 0.28 10.0 2.9 2.5 1 1 2 3 3 3 0 FemAB family DUF1993 PF09351.10 gi|347523774|ref|YP_004781344.1| - 0.05 13.7 0.8 6.3 6.9 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) Phage_GP20 PF06810.11 gi|347523774|ref|YP_004781344.1| - 0.051 13.4 7.2 0.03 14.1 3.3 2.1 1 1 0 2 2 2 0 Phage minor structural protein GP20 STAT_alpha PF01017.20 gi|347523774|ref|YP_004781344.1| - 0.051 13.5 9.7 1 9.2 9.3 2.4 1 1 1 2 2 1 0 STAT protein, all-alpha domain Occludin_ELL PF07303.13 gi|347523774|ref|YP_004781344.1| - 0.056 14.2 10.2 1.3e+02 3.4 9.4 3.2 1 1 0 1 1 1 0 Occludin homology domain MtrG PF04210.13 gi|347523774|ref|YP_004781344.1| - 0.058 13.2 16.4 16 5.4 0.2 5.0 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G FlaC_arch PF05377.11 gi|347523774|ref|YP_004781344.1| - 0.059 13.8 20.7 3.3 8.2 4.9 3.9 1 1 3 4 4 3 0 Flagella accessory protein C (FlaC) Cep57_MT_bd PF06657.13 gi|347523774|ref|YP_004781344.1| - 0.063 13.7 17.7 0.89 10.0 2.3 3.6 1 1 3 4 4 4 0 Centrosome microtubule-binding domain of Cep57 Bacillus_HBL PF05791.11 gi|347523774|ref|YP_004781344.1| - 0.065 13.1 3.1 4.7 7.0 0.4 2.2 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) YkyA PF10368.9 gi|347523774|ref|YP_004781344.1| - 0.068 12.8 15.8 0.75 9.4 15.8 2.5 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein DHR10 PF18595.1 gi|347523774|ref|YP_004781344.1| - 0.073 13.1 22.2 0.41 10.7 2.8 3.5 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain Vip3A_N PF12495.8 gi|347523774|ref|YP_004781344.1| - 0.077 12.9 3.9 7.3 6.5 2.6 2.3 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal XhlA PF10779.9 gi|347523774|ref|YP_004781344.1| - 0.082 13.1 30.3 0.71 10.1 2.3 4.2 1 1 1 3 3 3 0 Haemolysin XhlA FlxA PF14282.6 gi|347523774|ref|YP_004781344.1| - 0.084 12.9 3.4 0.68 9.9 0.6 2.7 1 1 1 2 2 2 0 FlxA-like protein LXG PF04740.12 gi|347523774|ref|YP_004781344.1| - 0.086 12.5 7.5 0.2 11.4 3.5 2.4 1 1 2 3 3 3 0 LXG domain of WXG superfamily Nup88 PF10168.9 gi|347523774|ref|YP_004781344.1| - 0.092 10.6 13.2 0.12 10.2 13.2 1.2 1 0 0 1 1 1 0 Nuclear pore component Uds1 PF15456.6 gi|347523774|ref|YP_004781344.1| - 0.1 12.8 17.9 3.7 7.7 6.9 3.6 1 1 1 2 2 2 0 Up-regulated During Septation Hemerythrin PF01814.23 gi|347523774|ref|YP_004781344.1| - 0.1 13.2 9.6 1.3 9.7 4.9 3.0 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain Peptidase_M75 PF09375.10 gi|347523774|ref|YP_004781344.1| - 0.1 12.0 0.7 5.8 6.3 0.0 2.2 1 1 1 2 2 2 0 Imelysin Tektin PF03148.14 gi|347523774|ref|YP_004781344.1| - 0.1 11.3 23.9 2 7.1 3.8 2.6 1 1 1 2 2 2 0 Tektin family DUF4527 PF15030.6 gi|347523774|ref|YP_004781344.1| - 0.1 12.0 6.9 0.33 10.3 2.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF4527) V-SNARE PF05008.15 gi|347523774|ref|YP_004781344.1| - 0.11 12.9 13.2 0.76 10.2 3.8 3.2 1 1 2 3 3 3 0 Vesicle transport v-SNARE protein N-terminus TcpS PF17456.2 gi|347523774|ref|YP_004781344.1| - 0.11 12.5 10.7 0.089 12.8 5.1 2.6 1 1 2 3 3 3 0 Toxin-coregulated pilus protein S Mce4_CUP1 PF11887.8 gi|347523774|ref|YP_004781344.1| - 0.12 11.9 0.9 4.8 6.6 0.0 2.8 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Hemagglutinin PF00509.18 gi|347523774|ref|YP_004781344.1| - 0.12 10.7 13.3 0.27 9.6 7.1 2.5 1 1 0 2 2 2 0 Haemagglutinin BAR_3 PF16746.5 gi|347523774|ref|YP_004781344.1| - 0.12 12.0 7.4 0.39 10.4 7.4 2.0 1 1 0 1 1 1 0 BAR domain of APPL family CLZ PF16526.5 gi|347523774|ref|YP_004781344.1| - 0.12 12.7 17.0 0.65 10.4 1.3 3.2 1 1 3 4 4 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HAUS-augmin3 PF14932.6 gi|347523774|ref|YP_004781344.1| - 0.13 11.9 4.2 1.5 8.3 0.5 2.3 1 1 0 2 2 2 0 HAUS augmin-like complex subunit 3 COG2 PF06148.11 gi|347523774|ref|YP_004781344.1| - 0.13 12.4 13.6 1.1e+03 -0.4 13.6 3.5 1 1 0 1 1 0 0 COG (conserved oligomeric Golgi) complex component, COG2 Cor1 PF04803.12 gi|347523774|ref|YP_004781344.1| - 0.13 12.5 5.1 2.4 8.4 0.4 2.3 1 1 2 3 3 3 0 Cor1/Xlr/Xmr conserved region ACP_PD PF04336.12 gi|347523774|ref|YP_004781344.1| - 0.14 12.6 2.2 4.4 7.8 0.1 2.7 1 1 1 2 2 2 0 Acyl carrier protein phosphodiesterase GLE1 PF07817.13 gi|347523774|ref|YP_004781344.1| - 0.14 11.4 3.6 3 7.0 0.8 2.2 2 0 0 2 2 2 0 GLE1-like protein Med22 PF06179.12 gi|347523774|ref|YP_004781344.1| - 0.14 12.4 14.4 2.3 8.5 0.4 4.3 1 1 3 4 4 4 0 Surfeit locus protein 5 subunit 22 of Mediator complex ApoO PF09769.9 gi|347523774|ref|YP_004781344.1| - 0.14 12.1 1.9 12 5.9 0.1 2.9 1 1 1 2 2 2 0 Apolipoprotein O Vps54_N PF10475.9 gi|347523774|ref|YP_004781344.1| - 0.14 11.4 11.4 0.053 12.8 1.9 2.2 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex FapA PF03961.13 gi|347523774|ref|YP_004781344.1| - 0.15 10.6 16.5 8 4.9 1.0 2.4 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF4351 PF14261.6 gi|347523774|ref|YP_004781344.1| - 0.15 12.1 10.5 35 4.5 0.1 5.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4351) YabA PF06156.13 gi|347523774|ref|YP_004781344.1| - 0.15 12.7 14.2 5 7.8 3.9 3.1 1 1 1 2 2 2 0 Initiation control protein YabA FliJ PF02050.16 gi|347523774|ref|YP_004781344.1| - 0.16 12.2 10.3 2.3 8.5 2.3 2.8 1 1 1 2 2 2 0 Flagellar FliJ protein Mobilization_B PF17511.2 gi|347523774|ref|YP_004781344.1| - 0.16 12.3 0.1 0.69 10.3 0.0 2.1 1 1 1 2 2 1 0 Mobilization protein B DASH_Duo1 PF08651.10 gi|347523774|ref|YP_004781344.1| - 0.17 11.6 11.3 4 7.3 0.2 4.4 1 1 3 4 4 4 0 DASH complex subunit Duo1 DUF1640 PF07798.11 gi|347523774|ref|YP_004781344.1| - 0.18 11.9 25.0 0.053 13.6 6.1 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) DUF2203 PF09969.9 gi|347523774|ref|YP_004781344.1| - 0.19 12.5 13.3 6.7e+02 1.0 13.3 2.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) THOC7 PF05615.13 gi|347523774|ref|YP_004781344.1| - 0.19 12.0 26.8 1.3 9.3 6.4 3.2 1 1 2 3 3 3 0 Tho complex subunit 7 ISG65-75 PF11727.8 gi|347523774|ref|YP_004781344.1| - 0.23 10.6 9.4 0.17 11.1 4.0 2.2 1 1 0 2 2 2 0 Invariant surface glycoprotein CREPT PF16566.5 gi|347523774|ref|YP_004781344.1| - 0.23 11.6 12.1 0.61 10.2 4.8 2.9 1 1 2 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour SOAR PF16533.5 gi|347523774|ref|YP_004781344.1| - 0.24 11.4 16.4 8.1 6.5 3.6 3.9 1 1 2 3 3 3 0 STIM1 Orai1-activating region Fez1 PF06818.15 gi|347523774|ref|YP_004781344.1| - 0.24 11.8 17.9 2.6 8.4 17.9 2.0 1 1 0 1 1 1 0 Fez1 FmiP_Thoc5 PF09766.9 gi|347523774|ref|YP_004781344.1| - 0.26 10.5 14.2 0.65 9.2 14.2 1.6 1 1 0 1 1 1 0 Fms-interacting protein/Thoc5 WASH_WAHD PF11945.8 gi|347523774|ref|YP_004781344.1| - 0.27 10.7 21.9 0.7 9.4 6.8 3.1 1 1 2 3 3 3 0 WAHD domain of WASH complex ACCA PF03255.14 gi|347523774|ref|YP_004781344.1| - 0.27 11.1 11.5 0.73 9.7 3.2 2.9 1 1 3 4 4 4 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF2205 PF10224.9 gi|347523774|ref|YP_004781344.1| - 0.27 11.2 18.7 0.33 11.0 1.6 4.2 1 1 2 3 3 3 0 Short coiled-coil protein Tht1 PF04163.12 gi|347523774|ref|YP_004781344.1| - 0.29 9.9 6.7 0.34 9.6 6.7 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein Sulfatase_C PF14707.6 gi|347523774|ref|YP_004781344.1| - 0.3 11.8 0.5 32 5.3 0.1 2.9 1 1 2 3 3 3 0 C-terminal region of aryl-sulfatase Med30 PF11315.8 gi|347523774|ref|YP_004781344.1| - 0.3 11.3 15.8 0.29 11.3 7.3 2.9 1 1 2 3 3 3 0 Mediator complex subunit 30 Allexi_40kDa PF05549.11 gi|347523774|ref|YP_004781344.1| - 0.34 10.4 10.8 0.67 9.4 4.2 2.3 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF4446 PF14584.6 gi|347523774|ref|YP_004781344.1| - 0.37 10.8 12.9 0.54 10.2 2.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) DUF2130 PF09903.9 gi|347523774|ref|YP_004781344.1| - 0.37 10.0 13.3 14 4.8 13.0 2.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) DUF3810 PF12725.7 gi|347523774|ref|YP_004781344.1| - 0.38 10.1 3.2 5.3 6.3 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) Taxilin PF09728.9 gi|347523774|ref|YP_004781344.1| - 0.41 9.8 16.5 0.79 8.8 13.3 2.1 1 1 1 2 2 2 0 Myosin-like coiled-coil protein DUF445 PF04286.12 gi|347523774|ref|YP_004781344.1| - 0.45 10.3 12.4 0.75 9.5 12.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF445) CSN5_C PF18323.1 gi|347523774|ref|YP_004781344.1| - 0.46 11.4 3.2 98 4.0 3.2 3.5 1 1 0 1 1 1 0 Cop9 signalosome subunit 5 C-terminal domain Vps53_N PF04100.12 gi|347523774|ref|YP_004781344.1| - 0.49 9.3 13.3 0.67 8.9 4.9 2.4 1 1 1 2 2 2 0 Vps53-like, N-terminal HAUS6_N PF14661.6 gi|347523774|ref|YP_004781344.1| - 0.5 9.9 13.8 0.23 11.0 4.1 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus 7TMR-HDED PF07697.11 gi|347523774|ref|YP_004781344.1| - 0.51 10.4 13.6 1.1 9.3 13.6 1.7 1 1 0 1 1 1 0 7TM-HD extracellular LidA_Long_CC PF18641.1 gi|347523774|ref|YP_004781344.1| - 0.54 10.3 12.5 14 5.7 2.2 3.2 1 1 1 2 2 2 0 LidA long coiled-coil domain CorA PF01544.18 gi|347523774|ref|YP_004781344.1| - 0.54 9.5 22.9 4.6 6.5 22.9 2.3 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein MutS_IV PF05190.18 gi|347523774|ref|YP_004781344.1| - 0.57 10.6 18.4 1.2 9.5 0.3 4.9 1 1 4 5 5 5 0 MutS family domain IV DUF1706 PF08020.11 gi|347523774|ref|YP_004781344.1| - 0.57 10.1 5.6 4.5 7.2 0.8 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1706) 5_nucleotid PF05761.14 gi|347523774|ref|YP_004781344.1| - 0.69 8.8 11.7 1.2 8.0 1.6 2.1 1 1 1 2 2 2 0 5' nucleotidase family DUF1110 PF06533.12 gi|347523774|ref|YP_004781344.1| - 0.73 9.8 6.1 2.9 7.8 0.2 3.1 1 1 1 3 3 2 0 Protein of unknown function (DUF1110) Med9 PF07544.13 gi|347523774|ref|YP_004781344.1| - 0.8 9.8 18.7 6.7 6.9 1.4 3.3 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Polyoma_coat2 PF00761.20 gi|347523774|ref|YP_004781344.1| - 0.86 9.3 2.6 0.66 9.6 1.3 1.4 1 1 0 1 1 1 0 Polyomavirus coat protein CENP-H PF05837.12 gi|347523774|ref|YP_004781344.1| - 0.93 9.9 15.0 23 5.4 9.3 3.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Matrilin_ccoil PF10393.9 gi|347523774|ref|YP_004781344.1| - 0.96 9.4 3.9 27 4.7 0.0 3.7 2 2 2 4 4 4 0 Trimeric coiled-coil oligomerisation domain of matrilin UPF0184 PF03670.13 gi|347523774|ref|YP_004781344.1| - 0.98 9.8 16.7 0.3 11.5 1.4 4.0 1 1 3 4 4 3 0 Uncharacterised protein family (UPF0184) DUF4200 PF13863.6 gi|347523774|ref|YP_004781344.1| - 1 9.8 23.4 1.2 9.6 10.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TolA_bind_tri PF16331.5 gi|347523774|ref|YP_004781344.1| - 1.4 9.1 17.3 2.5 8.2 3.3 2.7 1 1 0 2 2 2 0 TolA binding protein trimerisation DUF1451 PF07295.11 gi|347523774|ref|YP_004781344.1| - 1.4 9.0 5.9 0.78 9.8 2.2 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain Flagellin_C PF00700.21 gi|347523774|ref|YP_004781344.1| - 1.4 9.3 7.1 41 4.6 2.5 4.0 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region NPA PF16469.5 gi|347523774|ref|YP_004781344.1| - 1.5 9.4 7.5 14 6.3 0.4 3.1 1 1 0 2 2 2 0 Nematode polyprotein allergen ABA-1 TraF_2 PF13729.6 gi|347523774|ref|YP_004781344.1| - 1.9 7.8 7.9 96 2.2 7.9 2.6 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein DUF4140 PF13600.6 gi|347523774|ref|YP_004781344.1| - 2.2 8.8 17.4 54 4.3 7.2 4.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF3818 PF12825.7 gi|347523774|ref|YP_004781344.1| - 2.2 7.2 10.3 0.41 9.6 3.1 2.2 1 1 2 3 3 3 0 Domain of unknown function in PX-proteins (DUF3818) Halogen_Hydrol PF10112.9 gi|347523774|ref|YP_004781344.1| - 2.3 8.2 7.8 50 3.8 7.8 2.4 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein MICSWaP PF17018.5 gi|347523774|ref|YP_004781344.1| - 2.4 7.7 8.8 2.5 7.6 0.4 2.7 1 1 2 3 3 3 0 Spore wall protein MIF4G_like_2 PF09090.11 gi|347523774|ref|YP_004781344.1| - 2.5 7.5 13.7 45 3.4 13.7 2.5 1 1 0 1 1 1 0 MIF4G like Histidinol_dh PF00815.20 gi|347523774|ref|YP_004781344.1| - 2.5 7.0 7.4 3.5 6.5 1.3 2.1 1 1 1 2 2 2 0 Histidinol dehydrogenase DivIC PF04977.15 gi|347523774|ref|YP_004781344.1| - 2.6 7.9 18.0 1.6 8.6 3.2 4.0 1 1 4 5 5 4 0 Septum formation initiator UPF0449 PF15136.6 gi|347523774|ref|YP_004781344.1| - 2.7 8.5 10.3 43 4.6 5.5 3.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 HNOBA PF07701.14 gi|347523774|ref|YP_004781344.1| - 3 7.2 8.9 1.9 7.9 1.0 2.6 2 1 0 2 2 2 0 Heme NO binding associated DUF3552 PF12072.8 gi|347523774|ref|YP_004781344.1| - 3.1 7.2 23.5 1.2 8.5 19.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF3782 PF12644.7 gi|347523774|ref|YP_004781344.1| - 3.2 8.0 17.7 1.8e+04 -7.4 17.7 4.7 1 1 0 1 1 0 0 Protein of unknown function (DUF3782) GrpE PF01025.19 gi|347523774|ref|YP_004781344.1| - 3.3 7.4 13.7 1.4e+02 2.0 13.6 2.6 1 1 0 1 1 1 0 GrpE ATP-synt_ab_C PF00306.27 gi|347523774|ref|YP_004781344.1| - 3.6 7.9 7.6 8.9 6.7 0.6 3.0 1 1 2 3 3 3 0 ATP synthase alpha/beta chain, C terminal domain UPF0242 PF06785.11 gi|347523774|ref|YP_004781344.1| - 3.6 7.7 18.7 3.2 7.8 9.4 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus YojJ PF10372.9 gi|347523774|ref|YP_004781344.1| - 3.9 7.6 10.9 21 5.3 0.9 4.1 2 2 3 5 5 5 0 Bacterial membrane-spanning protein N-terminus LMBR1 PF04791.16 gi|347523774|ref|YP_004781344.1| - 4 6.2 16.2 16 4.3 16.2 1.8 1 1 0 1 1 1 0 LMBR1-like membrane protein DASH_Dad4 PF08650.10 gi|347523774|ref|YP_004781344.1| - 4.1 7.4 16.8 1.4 9.0 1.3 3.6 1 1 1 3 3 3 0 DASH complex subunit Dad4 zf-CpG_bind_C PF12269.8 gi|347523774|ref|YP_004781344.1| - 4.1 7.1 11.4 7.6 6.2 3.5 2.2 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain KH_5 PF13184.6 gi|347523774|ref|YP_004781344.1| - 4.3 7.5 13.5 1.4 9.1 3.0 3.8 2 2 2 4 4 3 0 NusA-like KH domain DUF4988 PF16378.5 gi|347523774|ref|YP_004781344.1| - 4.3 7.0 10.7 8.6 6.0 1.0 3.1 2 1 1 3 3 3 0 Domain of unknown function SNARE PF05739.19 gi|347523774|ref|YP_004781344.1| - 5.9 7.0 9.3 58 3.8 0.1 4.0 2 1 1 4 4 4 0 SNARE domain MRPL52 PF18699.1 gi|347523774|ref|YP_004781344.1| - 7 6.9 17.5 4 7.7 2.7 3.3 1 1 2 3 3 3 0 Mitoribosomal protein mL52 DUF1729 PF08354.10 gi|347523774|ref|YP_004781344.1| - 7.8 5.3 6.7 24 3.7 6.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1729) LegC3_N PF18654.1 gi|347523774|ref|YP_004781344.1| - 8 5.6 23.3 2.5 7.2 16.0 2.2 1 1 1 2 2 2 0 LegC3 N-terminal coiled-coil domain DUF4041 PF13250.6 gi|347523774|ref|YP_004781344.1| - 9.8 6.1 15.4 1.9 8.4 2.0 4.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4041) NTP_transf_2 PF01909.23 gi|347523776|ref|YP_004781346.1| - 2.1e-15 56.8 0.0 2.5e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523776|ref|YP_004781346.1| - 1.8e-07 31.2 0.0 2e-07 31.0 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|347523776|ref|YP_004781346.1| - 0.012 15.8 0.0 0.017 15.4 0.0 1.5 1 1 0 1 1 1 0 DNA polymerase beta palm BolA PF01722.18 gi|347523776|ref|YP_004781346.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.5 1 1 0 1 1 1 0 BolA-like protein HEPN PF05168.14 gi|347523777|ref|YP_004781347.1| - 9.1e-28 96.8 0.0 1.1e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|347523778|ref|YP_004781348.1| - 2.9e-24 85.2 0.5 2.9e-24 85.2 0.5 1.8 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family EAL PF00563.20 gi|347523778|ref|YP_004781348.1| - 0.07 12.6 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 EAL domain AAA_5 PF07728.14 gi|347523780|ref|YP_004781350.1| - 5.6e-13 49.1 0.0 1.1e-12 48.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|347523780|ref|YP_004781350.1| - 0.00034 21.1 0.0 0.00059 20.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|347523780|ref|YP_004781350.1| - 0.00087 19.8 0.0 0.0017 18.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347523780|ref|YP_004781350.1| - 0.0011 19.4 0.0 0.0055 17.1 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|347523780|ref|YP_004781350.1| - 0.004 16.9 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|347523780|ref|YP_004781350.1| - 0.0041 17.3 0.0 0.0077 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347523780|ref|YP_004781350.1| - 0.0047 17.2 0.0 0.013 15.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|347523780|ref|YP_004781350.1| - 0.0051 16.6 0.0 0.0094 15.7 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|347523780|ref|YP_004781350.1| - 0.026 13.8 0.0 0.038 13.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_25 PF13481.6 gi|347523780|ref|YP_004781350.1| - 0.026 14.1 0.2 0.27 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|347523780|ref|YP_004781350.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|347523780|ref|YP_004781350.1| - 0.08 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|347523780|ref|YP_004781350.1| - 0.091 13.0 0.0 0.21 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347523780|ref|YP_004781350.1| - 0.096 12.6 0.0 2.3 8.1 0.0 2.6 3 0 0 3 3 3 0 NACHT domain AAA_17 PF13207.6 gi|347523780|ref|YP_004781350.1| - 0.1 13.0 0.0 0.36 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|347523780|ref|YP_004781350.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|347523780|ref|YP_004781350.1| - 0.19 11.6 0.0 0.63 9.9 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|347523780|ref|YP_004781350.1| - 0.22 11.0 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Nucleic_acid_bd PF13820.6 gi|347523781|ref|YP_004781351.1| - 0.0081 16.0 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative nucleic acid-binding region MacB_PCD PF12704.7 gi|347523781|ref|YP_004781351.1| - 0.037 14.4 0.0 0.083 13.2 0.0 1.5 1 1 0 1 1 1 0 MacB-like periplasmic core domain PaREP1 PF05942.11 gi|347523784|ref|YP_004781354.1| - 2.8e-30 104.6 0.2 4.2e-30 104.0 0.2 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DNA_pol_phi PF04931.13 gi|347523784|ref|YP_004781354.1| - 0.0035 15.5 0.1 0.03 12.5 0.1 1.9 2 0 0 2 2 2 1 DNA polymerase phi DUF1488 PF07369.11 gi|347523784|ref|YP_004781354.1| - 0.18 11.8 1.5 6.3 6.9 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1488) PaREP1 PF05942.11 gi|347523786|ref|YP_004781356.1| - 2e-27 95.4 5.3 3.3e-27 94.7 5.3 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|347523786|ref|YP_004781356.1| - 0.00018 21.6 3.3 0.00018 21.6 3.3 1.9 2 1 0 2 2 2 1 HEPN domain DUF5618 PF18498.1 gi|347523786|ref|YP_004781356.1| - 0.0012 19.1 0.0 0.0017 18.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) DUF1771 PF08590.10 gi|347523786|ref|YP_004781356.1| - 0.59 10.6 5.5 1.1 9.7 2.8 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1771) NTP_transf_2 PF01909.23 gi|347523787|ref|YP_004781357.1| - 2.6e-08 34.0 0.0 4e-08 33.4 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523787|ref|YP_004781357.1| - 7.5e-06 25.9 0.0 8.5e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase PGK PF00162.19 gi|347523787|ref|YP_004781357.1| - 0.021 13.8 0.0 0.024 13.6 0.0 1.0 1 0 0 1 1 1 0 Phosphoglycerate kinase Adenyl_cycl_N PF12633.7 gi|347523787|ref|YP_004781357.1| - 0.085 12.8 0.0 0.09 12.7 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase NT domain HEPN PF05168.14 gi|347523788|ref|YP_004781358.1| - 4.9e-22 78.3 3.1 6.8e-22 77.8 3.1 1.1 1 0 0 1 1 1 1 HEPN domain EzrA PF06160.12 gi|347523790|ref|YP_004781360.1| - 0.025 12.8 0.8 0.034 12.3 0.8 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Prefoldin_2 PF01920.20 gi|347523790|ref|YP_004781360.1| - 0.079 12.9 3.8 0.12 12.4 3.8 1.2 1 0 0 1 1 1 0 Prefoldin subunit HalX PF08663.10 gi|347523790|ref|YP_004781360.1| - 0.13 12.6 1.2 0.27 11.6 1.2 1.5 1 0 0 1 1 1 0 HalX domain CorA PF01544.18 gi|347523790|ref|YP_004781360.1| - 0.14 11.4 0.4 0.22 10.8 0.4 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein FlaC_arch PF05377.11 gi|347523790|ref|YP_004781360.1| - 0.3 11.5 3.4 0.61 10.5 3.4 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Med21 PF11221.8 gi|347523790|ref|YP_004781360.1| - 0.54 10.5 3.1 0.82 9.9 3.1 1.2 1 0 0 1 1 1 0 Subunit 21 of Mediator complex XhlA PF10779.9 gi|347523790|ref|YP_004781360.1| - 0.72 10.1 2.7 2.1 8.6 2.7 1.7 1 0 0 1 1 1 0 Haemolysin XhlA Acyl-CoA_dh_C PF12806.7 gi|347523790|ref|YP_004781360.1| - 2.8 8.1 7.0 12 6.1 1.1 3.0 3 0 0 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like PsbX PF06596.11 gi|347523790|ref|YP_004781360.1| - 10 6.3 9.5 0.22 11.6 0.9 2.6 2 1 0 2 2 2 0 Photosystem II reaction centre X protein (PsbX) DUF973 PF06157.11 gi|347523791|ref|YP_004781361.1| - 1.1e-05 24.6 15.6 2.5e-05 23.5 15.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|347523791|ref|YP_004781361.1| - 0.5 10.7 19.0 0.58 10.4 13.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF996) HEPN PF05168.14 gi|347523792|ref|YP_004781362.1| - 5.3e-29 100.8 0.0 6.2e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|347523793|ref|YP_004781363.1| - 2.7e-11 43.6 0.0 3.6e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347523793|ref|YP_004781363.1| - 3.5e-10 39.8 0.0 9.3e-10 38.5 0.0 1.6 1 1 1 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|347523793|ref|YP_004781363.1| - 0.00023 21.0 0.0 0.00033 20.5 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 Polbeta PF18765.1 gi|347523794|ref|YP_004781364.1| - 1.4e-05 25.1 0.1 3.1e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|347523794|ref|YP_004781364.1| - 6.5e-05 23.1 0.5 0.00014 22.1 0.5 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain ZT_dimer PF16916.5 gi|347523794|ref|YP_004781364.1| - 0.00018 21.6 0.5 0.00018 21.6 0.5 1.7 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter RepB PF07506.11 gi|347523794|ref|YP_004781364.1| - 0.06 13.4 0.9 0.21 11.7 0.1 2.1 2 1 1 3 3 3 0 RepB plasmid partitioning protein HEPN PF05168.14 gi|347523795|ref|YP_004781365.1| - 1.5e-22 80.0 0.2 1.8e-22 79.7 0.2 1.1 1 0 0 1 1 1 1 HEPN domain HEPN_AbiV PF18728.1 gi|347523795|ref|YP_004781365.1| - 0.00025 21.3 0.1 0.12 12.5 0.1 2.4 1 1 1 2 2 2 2 AbiV PaREP1 PF05942.11 gi|347523795|ref|YP_004781365.1| - 0.012 15.5 1.0 0.021 14.8 0.2 1.7 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family SMBP PF16785.5 gi|347523795|ref|YP_004781365.1| - 0.061 13.5 0.1 0.15 12.3 0.0 1.6 2 0 0 2 2 2 0 Small metal-binding protein DUF4398 PF14346.6 gi|347523795|ref|YP_004781365.1| - 0.092 13.4 4.9 0.12 13.0 1.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_2 PF07719.17 gi|347523795|ref|YP_004781365.1| - 0.12 12.6 1.6 0.41 10.9 0.2 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat FliS PF02561.14 gi|347523795|ref|YP_004781365.1| - 0.19 12.0 0.2 0.39 11.0 0.1 1.6 2 0 0 2 2 2 0 Flagellar protein FliS ATP-synt_DE PF00401.20 gi|347523795|ref|YP_004781365.1| - 0.68 10.2 10.3 0.25 11.6 0.7 2.7 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DUF692 PF05114.13 gi|347523796|ref|YP_004781366.1| - 0.17 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF692) PaREP1 PF05942.11 gi|347523798|ref|YP_004781368.1| - 1.6e-28 99.0 2.2 1.6e-28 99.0 2.2 2.0 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF3209 PF11483.8 gi|347523798|ref|YP_004781368.1| - 0.0054 17.2 1.0 0.0075 16.7 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) LEA_2 PF03168.13 gi|347523800|ref|YP_004781370.1| - 2.5e-05 24.7 0.0 0.0017 18.9 0.0 2.5 2 0 0 2 2 2 2 Late embryogenesis abundant protein Radical_SAM PF04055.21 gi|347523801|ref|YP_004781371.1| - 4.4e-14 53.2 0.1 3.2e-13 50.4 0.0 2.1 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347523801|ref|YP_004781371.1| - 7.3e-10 39.3 0.0 1e-09 38.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347523801|ref|YP_004781371.1| - 1.2e-05 25.4 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain CcmH PF03918.14 gi|347523801|ref|YP_004781371.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Hemerythrin PF01814.23 gi|347523802|ref|YP_004781372.1| - 1.7e-10 41.6 2.9 2.2e-10 41.2 2.0 1.6 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain DUF4388 PF14332.6 gi|347523802|ref|YP_004781372.1| - 0.18 12.1 0.0 0.27 11.5 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4388) PaREP1 PF05942.11 gi|347523803|ref|YP_004781373.1| - 1e-22 80.2 0.4 1.8e-22 79.5 0.4 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Phage_holin_3_6 PF07332.11 gi|347523804|ref|YP_004781374.1| - 4.4 7.4 13.9 0.56 10.3 9.6 1.6 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III PDT PF00800.18 gi|347523805|ref|YP_004781375.1| - 1.3e-49 168.5 0.0 1.6e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|347523805|ref|YP_004781375.1| - 7.8e-09 35.2 0.0 1.6e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain SpoU_sub_bind PF08032.12 gi|347523805|ref|YP_004781375.1| - 0.028 14.7 1.2 1 9.7 0.0 3.3 4 0 0 4 4 4 0 RNA 2'-O ribose methyltransferase substrate binding DUF4395 PF14340.6 gi|347523806|ref|YP_004781376.1| - 0.045 14.1 3.6 0.067 13.5 3.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) DUF3510 PF12022.8 gi|347523807|ref|YP_004781377.1| - 0.08 13.3 0.1 0.094 13.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) PIN PF01850.21 gi|347523808|ref|YP_004781378.1| - 0.026 15.0 0.0 0.03 14.8 0.0 1.0 1 0 0 1 1 1 0 PIN domain PAPS_reduct PF01507.19 gi|347523810|ref|YP_004781380.1| - 1.8e-34 119.3 0.0 2.8e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.6 gi|347523810|ref|YP_004781380.1| - 0.00011 22.2 12.8 0.0037 17.3 1.4 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523810|ref|YP_004781380.1| - 0.00017 22.1 2.5 0.47 11.0 0.4 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523810|ref|YP_004781380.1| - 0.00021 20.9 24.4 0.00043 20.0 3.0 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|347523810|ref|YP_004781380.1| - 0.00028 21.7 13.9 0.0038 18.1 4.4 2.7 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|347523810|ref|YP_004781380.1| - 0.00034 20.5 2.2 0.00034 20.5 2.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347523810|ref|YP_004781380.1| - 0.00045 20.2 5.2 0.00045 20.2 5.2 3.0 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347523810|ref|YP_004781380.1| - 0.00066 19.8 13.0 0.0027 17.8 13.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347523810|ref|YP_004781380.1| - 0.0025 18.3 15.8 0.038 14.6 16.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain NAD_synthase PF02540.17 gi|347523810|ref|YP_004781380.1| - 0.017 14.2 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|347523810|ref|YP_004781380.1| - 0.022 13.6 0.0 0.043 12.6 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase Fer4_4 PF12800.7 gi|347523810|ref|YP_004781380.1| - 0.041 14.4 15.1 1.6 9.5 2.5 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347523810|ref|YP_004781380.1| - 0.066 13.7 12.1 1.1 9.7 2.2 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|347523810|ref|YP_004781380.1| - 0.17 12.0 20.9 3.6 7.8 5.0 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|347523810|ref|YP_004781380.1| - 0.49 11.2 7.5 1.6 9.5 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|347523810|ref|YP_004781380.1| - 1.2 9.3 13.2 3.2 8.0 3.5 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523812|ref|YP_004781382.1| - 2.2e-13 49.4 14.3 5.8e-08 32.2 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347523812|ref|YP_004781382.1| - 1.7e-10 40.9 9.3 5.9e-05 23.1 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347523812|ref|YP_004781382.1| - 1.8e-09 37.3 13.2 1.1e-05 25.2 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347523812|ref|YP_004781382.1| - 4.4e-09 36.4 12.5 1.2e-07 31.8 4.6 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|347523812|ref|YP_004781382.1| - 6.9e-09 36.2 5.6 1.5e-08 35.1 5.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523812|ref|YP_004781382.1| - 4.9e-08 33.8 5.4 7.8e-08 33.1 5.4 1.3 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|347523812|ref|YP_004781382.1| - 8.6e-08 31.8 13.1 0.00033 20.6 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|347523812|ref|YP_004781382.1| - 1.6e-07 31.3 20.7 2.6e-06 27.4 10.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523812|ref|YP_004781382.1| - 2.5e-07 31.1 2.9 3.6e-07 30.6 2.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347523812|ref|YP_004781382.1| - 4e-07 30.0 8.6 0.0042 17.5 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347523812|ref|YP_004781382.1| - 3e-05 24.4 5.8 5.7e-05 23.5 5.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|347523812|ref|YP_004781382.1| - 0.00014 22.6 4.2 0.055 14.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|347523812|ref|YP_004781382.1| - 0.0023 18.8 16.5 0.065 14.2 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|347523812|ref|YP_004781382.1| - 0.0032 18.0 9.5 0.071 13.7 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|347523812|ref|YP_004781382.1| - 0.0065 17.3 5.6 0.99 10.3 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain MULE PF10551.9 gi|347523812|ref|YP_004781382.1| - 0.039 14.4 0.0 0.051 14.0 0.0 1.2 1 0 0 1 1 1 0 MULE transposase domain Fer4_20 PF14691.6 gi|347523812|ref|YP_004781382.1| - 0.22 11.3 3.7 0.23 11.3 0.1 2.0 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|347523812|ref|YP_004781382.1| - 4.4 7.5 9.4 9.2 6.5 1.5 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|347523813|ref|YP_004781383.1| - 5.9e-34 117.7 0.0 7.2e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|347523814|ref|YP_004781384.1| - 3.8e-29 101.5 0.0 5.9e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|347523814|ref|YP_004781384.1| - 0.017 15.3 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|347523815|ref|YP_004781385.1| - 1.8e-61 207.8 0.9 1.8e-61 207.8 0.9 1.4 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|347523815|ref|YP_004781385.1| - 4.8e-18 65.4 0.0 1.1e-17 64.2 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|347523815|ref|YP_004781385.1| - 9.3e-07 28.6 0.9 1.9e-06 27.6 0.4 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|347523815|ref|YP_004781385.1| - 0.00016 21.5 0.0 0.00057 19.8 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain HpaB_N PF11794.8 gi|347523816|ref|YP_004781386.1| - 1.5e-103 346.2 1.5 2.3e-103 345.6 1.5 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|347523816|ref|YP_004781386.1| - 4e-66 221.9 0.1 6e-66 221.4 0.1 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_1 PF00441.24 gi|347523816|ref|YP_004781386.1| - 0.00067 19.9 0.0 0.0013 19.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|347523816|ref|YP_004781386.1| - 0.003 17.7 0.0 0.0058 16.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Fumerase PF05681.14 gi|347523817|ref|YP_004781387.1| - 5.5e-86 288.3 0.0 6.2e-86 288.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) FAD_binding_2 PF00890.24 gi|347523818|ref|YP_004781388.1| - 1e-115 387.2 7.0 1.4e-115 386.7 7.0 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|347523818|ref|YP_004781388.1| - 2.4e-31 108.4 0.1 4e-31 107.7 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|347523818|ref|YP_004781388.1| - 1.7e-10 41.0 8.5 1.7e-09 37.7 8.5 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|347523818|ref|YP_004781388.1| - 1.2e-07 31.3 0.2 2.4e-06 27.0 0.0 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|347523818|ref|YP_004781388.1| - 3.9e-07 29.8 3.9 1.5e-06 27.8 2.8 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|347523818|ref|YP_004781388.1| - 4.7e-07 28.9 2.1 1.5e-06 27.2 1.2 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|347523818|ref|YP_004781388.1| - 9.4e-06 24.9 3.8 6.7e-05 22.1 3.6 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|347523818|ref|YP_004781388.1| - 2.1e-05 24.0 1.2 3.2e-05 23.4 1.2 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|347523818|ref|YP_004781388.1| - 0.00024 20.4 2.1 0.0052 16.1 0.5 2.8 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.6 gi|347523818|ref|YP_004781388.1| - 0.00071 19.8 1.5 0.00071 19.8 1.5 3.1 4 0 0 4 4 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|347523818|ref|YP_004781388.1| - 0.0062 15.6 0.8 0.01 14.9 0.8 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|347523818|ref|YP_004781388.1| - 0.0071 15.6 0.2 0.012 14.9 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|347523818|ref|YP_004781388.1| - 0.0073 15.6 0.4 0.016 14.5 0.4 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|347523818|ref|YP_004781388.1| - 0.0096 16.5 0.6 0.023 15.2 0.6 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|347523818|ref|YP_004781388.1| - 0.041 13.2 0.0 0.1 11.9 0.0 1.6 2 0 0 2 2 2 0 GMC oxidoreductase 3HCDH_N PF02737.18 gi|347523818|ref|YP_004781388.1| - 0.55 10.1 1.8 0.89 9.4 1.8 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer2_3 PF13085.6 gi|347523819|ref|YP_004781389.1| - 8.3e-33 112.7 0.0 8.3e-33 112.7 0.0 1.6 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|347523819|ref|YP_004781389.1| - 5.3e-11 42.8 2.8 5.6e-11 42.7 0.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523819|ref|YP_004781389.1| - 1.9e-07 31.5 1.2 1.9e-07 31.5 1.2 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347523819|ref|YP_004781389.1| - 4.6e-07 29.9 8.0 0.0017 18.5 0.1 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523819|ref|YP_004781389.1| - 3.6e-06 26.5 18.7 0.00033 20.4 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347523819|ref|YP_004781389.1| - 9.5e-06 25.7 4.0 0.0084 16.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer2 PF00111.27 gi|347523819|ref|YP_004781389.1| - 2.6e-05 24.1 0.3 2.6e-05 24.1 0.3 2.2 3 0 0 3 3 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.6 gi|347523819|ref|YP_004781389.1| - 9.1e-05 22.5 13.1 0.00018 21.6 9.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347523819|ref|YP_004781389.1| - 9.3e-05 22.3 18.0 0.00075 19.5 0.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347523819|ref|YP_004781389.1| - 0.00025 21.6 12.4 0.0025 18.4 9.4 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|347523819|ref|YP_004781389.1| - 0.00058 19.8 15.9 0.01 15.9 0.8 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|347523819|ref|YP_004781389.1| - 0.0043 17.4 14.3 0.041 14.4 0.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|347523819|ref|YP_004781389.1| - 0.023 14.9 1.4 1.3 9.2 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523819|ref|YP_004781389.1| - 0.039 14.9 13.2 0.13 13.2 10.0 2.8 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|347523819|ref|YP_004781389.1| - 0.15 12.8 2.1 6 7.7 0.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|347523819|ref|YP_004781389.1| - 0.68 10.5 8.7 0.68 10.5 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|347523819|ref|YP_004781389.1| - 1 9.2 4.8 0.5 10.1 0.4 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CCG PF02754.16 gi|347523820|ref|YP_004781390.1| - 7.1e-21 74.2 1.3 1.7e-10 41.0 0.1 2.2 2 0 0 2 2 2 2 Cysteine-rich domain UPF0004 PF00919.20 gi|347523820|ref|YP_004781390.1| - 0.027 14.5 0.8 3.3 7.8 0.1 2.4 2 1 0 2 2 2 0 Uncharacterized protein family UPF0004 DUF2487 PF10673.9 gi|347523820|ref|YP_004781390.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) DUF5304 PF17230.2 gi|347523821|ref|YP_004781391.1| - 0.2 11.9 0.2 0.2 11.9 0.2 1.7 2 1 0 2 2 2 0 Family of unknown function (DUF5304) ACC_epsilon PF13822.6 gi|347523821|ref|YP_004781391.1| - 0.71 10.6 4.9 0.66 10.7 3.5 1.8 1 1 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit SPOUT_MTase_2 PF14419.6 gi|347523822|ref|YP_004781392.1| - 3e-80 267.6 0.2 5.9e-80 266.7 0.2 1.5 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|347523822|ref|YP_004781392.1| - 5e-26 91.5 0.2 9.6e-26 90.6 0.2 1.5 1 0 0 1 1 1 1 THUMP domain DUF89 PF01937.19 gi|347523823|ref|YP_004781393.1| - 1.2e-26 93.5 0.1 6.2e-26 91.2 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function DUF89 Usp PF00582.26 gi|347523825|ref|YP_004781395.1| - 2.1e-16 60.7 4.6 2.8e-15 57.1 4.6 1.9 1 1 0 1 1 1 1 Universal stress protein family Gp_dh_C PF02800.20 gi|347523826|ref|YP_004781396.1| - 1.6e-23 83.0 0.1 2.3e-23 82.5 0.1 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|347523826|ref|YP_004781396.1| - 4.9e-12 46.1 0.1 1.2e-11 44.7 0.1 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|347523826|ref|YP_004781396.1| - 3.6e-06 27.2 0.3 3.1e-05 24.2 0.1 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|347523826|ref|YP_004781396.1| - 8.3e-05 22.0 0.1 0.1 11.9 0.1 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|347523826|ref|YP_004781396.1| - 0.00041 21.1 0.1 0.0031 18.3 0.0 2.4 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|347523826|ref|YP_004781396.1| - 0.00076 19.7 0.2 0.0045 17.2 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|347523826|ref|YP_004781396.1| - 0.0024 18.5 0.3 0.01 16.5 0.0 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|347523826|ref|YP_004781396.1| - 0.051 14.0 0.1 0.15 12.5 0.1 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain PGK PF00162.19 gi|347523827|ref|YP_004781397.1| - 7.1e-103 344.5 0.0 8.7e-103 344.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase QRPTase_C PF01729.19 gi|347523829|ref|YP_004781399.1| - 5.3e-39 133.7 0.0 7.7e-39 133.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|347523829|ref|YP_004781399.1| - 1.1e-18 67.1 0.4 2e-18 66.2 0.4 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|347523829|ref|YP_004781399.1| - 0.0022 17.4 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|347523829|ref|YP_004781399.1| - 0.015 14.7 0.2 0.046 13.1 0.2 1.8 1 1 0 1 1 1 0 Thiamine monophosphate synthase ASCH PF04266.14 gi|347523831|ref|YP_004781401.1| - 3.4e-19 69.4 0.1 6e-19 68.6 0.1 1.4 1 0 0 1 1 1 1 ASCH domain HOIP-UBA PF16678.5 gi|347523831|ref|YP_004781401.1| - 0.035 14.1 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair zf-FPG_IleRS PF06827.14 gi|347523832|ref|YP_004781402.1| - 5.5e-05 22.9 2.4 9.9e-05 22.1 2.4 1.5 1 1 0 1 1 1 1 Zinc finger found in FPG and IleRS NOB1_Zn_bind PF08772.11 gi|347523832|ref|YP_004781402.1| - 0.0002 21.5 0.1 0.00025 21.1 0.1 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|347523832|ref|YP_004781402.1| - 0.001 18.9 1.8 0.0015 18.4 1.8 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain Ribosomal_L37e PF01907.19 gi|347523832|ref|YP_004781402.1| - 0.011 15.8 2.2 0.77 10.0 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein L37e Zn-ribbon_8 PF09723.10 gi|347523832|ref|YP_004781402.1| - 0.011 15.8 0.6 0.037 14.1 0.4 2.0 1 1 1 2 2 2 0 Zinc ribbon domain HscB_4_cys PF18256.1 gi|347523832|ref|YP_004781402.1| - 0.023 14.5 4.1 0.029 14.2 0.3 2.1 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif zf-RING_7 PF02591.15 gi|347523832|ref|YP_004781402.1| - 0.041 14.1 1.2 2.1 8.6 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain HypA PF01155.19 gi|347523832|ref|YP_004781402.1| - 0.052 13.6 0.1 0.06 13.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|347523832|ref|YP_004781402.1| - 0.21 11.5 6.1 1.6 8.7 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|347523832|ref|YP_004781402.1| - 0.5 10.2 7.1 2.7 7.8 1.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|347523832|ref|YP_004781402.1| - 1.2 9.7 5.7 21 5.6 5.7 2.1 1 1 0 1 1 1 0 Ribosomal protein L33 zinc_ribbon_4 PF13717.6 gi|347523832|ref|YP_004781402.1| - 1.2 9.1 7.2 0.35 10.8 1.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DeoC PF01791.9 gi|347523833|ref|YP_004781403.1| - 1.9e-06 27.7 0.2 7.4e-06 25.8 0.1 2.0 1 1 1 2 2 2 1 DeoC/LacD family aldolase Radical_SAM PF04055.21 gi|347523833|ref|YP_004781403.1| - 0.078 13.4 0.1 2.8 8.3 0.0 2.5 2 1 0 2 2 2 0 Radical SAM superfamily PdxJ PF03740.13 gi|347523833|ref|YP_004781403.1| - 0.087 11.9 0.1 0.28 10.3 0.1 1.8 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthesis protein PdxJ TP6A_N PF04406.14 gi|347523834|ref|YP_004781404.1| - 1.9e-22 79.0 0.2 5.1e-22 77.6 0.2 1.8 2 0 0 2 2 2 1 Type IIB DNA topoisomerase GTP_EFTU_D4 PF14578.6 gi|347523834|ref|YP_004781404.1| - 0.029 14.3 0.2 0.06 13.2 0.2 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 4 DUF2399 PF09664.10 gi|347523834|ref|YP_004781404.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|347523835|ref|YP_004781405.1| - 2.4e-60 202.9 0.0 4.2e-60 202.2 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|347523835|ref|YP_004781405.1| - 3.2e-11 43.7 0.0 5.6e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|347523835|ref|YP_004781405.1| - 2.2e-08 34.0 0.0 4.1e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|347523835|ref|YP_004781405.1| - 1.2e-06 27.6 0.1 2.5e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) AAA_lid_2 PF17863.1 gi|347523835|ref|YP_004781405.1| - 0.03 14.2 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain Ribosomal_S13 PF00416.22 gi|347523835|ref|YP_004781405.1| - 0.035 14.5 0.0 0.094 13.1 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S13/S18 H2TH PF06831.14 gi|347523835|ref|YP_004781405.1| - 0.041 13.9 0.0 0.16 12.0 0.0 2.0 1 0 0 1 1 1 0 Formamidopyrimidine-DNA glycosylase H2TH domain DUF5053 PF16476.5 gi|347523835|ref|YP_004781405.1| - 0.14 11.9 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5053) LTD PF00932.19 gi|347523836|ref|YP_004781406.1| - 0.083 13.3 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Lamin Tail Domain T2SSE PF00437.20 gi|347523837|ref|YP_004781407.1| - 6.9e-48 163.1 0.0 1e-47 162.5 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|347523837|ref|YP_004781407.1| - 6.7e-05 23.4 0.0 0.00012 22.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|347523837|ref|YP_004781407.1| - 0.0001 22.8 0.2 0.00099 19.5 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|347523837|ref|YP_004781407.1| - 0.00029 20.8 0.0 0.00045 20.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|347523837|ref|YP_004781407.1| - 0.0007 20.2 0.0 0.0015 19.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347523837|ref|YP_004781407.1| - 0.00079 19.1 0.0 0.0018 18.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|347523837|ref|YP_004781407.1| - 0.00082 18.9 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|347523837|ref|YP_004781407.1| - 0.0022 17.8 0.0 0.0048 16.6 0.0 1.5 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.6 gi|347523837|ref|YP_004781407.1| - 0.0081 16.2 0.0 0.074 13.1 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|347523837|ref|YP_004781407.1| - 0.012 15.6 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|347523837|ref|YP_004781407.1| - 0.015 15.5 0.1 0.071 13.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|347523837|ref|YP_004781407.1| - 0.031 13.6 0.0 0.062 12.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|347523837|ref|YP_004781407.1| - 0.067 13.3 0.0 0.23 11.5 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|347523837|ref|YP_004781407.1| - 0.074 13.2 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|347523837|ref|YP_004781407.1| - 0.074 12.4 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|347523837|ref|YP_004781407.1| - 0.1 11.3 0.2 0.17 10.7 0.2 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class SRPRB PF09439.10 gi|347523837|ref|YP_004781407.1| - 0.15 11.4 0.0 0.35 10.3 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit FtsK_SpoIIIE PF01580.18 gi|347523837|ref|YP_004781407.1| - 0.17 11.2 0.4 0.34 10.2 0.1 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family DLIC PF05783.11 gi|347523837|ref|YP_004781407.1| - 0.19 10.5 0.0 0.3 9.9 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) IF-2B PF01008.17 gi|347523839|ref|YP_004781409.1| - 1e-94 316.9 0.3 1.2e-94 316.6 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family tRNA_int_endo PF01974.17 gi|347523840|ref|YP_004781410.1| - 5.8e-07 29.5 0.0 1.2e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA-synt_His PF13393.6 gi|347523841|ref|YP_004781411.1| - 3.5e-65 220.3 0.2 4.2e-65 220.0 0.2 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|347523841|ref|YP_004781411.1| - 6.9e-13 49.0 0.3 3.8e-12 46.5 0.2 2.0 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|347523841|ref|YP_004781411.1| - 5.9e-11 42.4 0.1 1.8e-10 40.8 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|347523841|ref|YP_004781411.1| - 0.0017 17.9 0.0 0.0047 16.4 0.0 1.7 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|347523841|ref|YP_004781411.1| - 0.054 12.6 4.4 1.5 7.8 1.6 2.4 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) DUF2524 PF10732.9 gi|347523841|ref|YP_004781411.1| - 0.068 13.5 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2524) RtcB PF01139.17 gi|347523842|ref|YP_004781412.1| - 4.8e-162 539.8 0.0 5.5e-162 539.6 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|347523842|ref|YP_004781412.1| - 0.1 12.7 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Helicase_RecD PF05127.14 gi|347523843|ref|YP_004781413.1| - 9.6e-54 181.9 0.0 1.8e-53 181.0 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|347523843|ref|YP_004781413.1| - 1.3e-45 155.6 0.0 1e-31 110.1 0.0 2.9 2 1 1 3 3 3 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|347523843|ref|YP_004781413.1| - 2.4e-32 110.7 0.0 6.1e-32 109.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|347523843|ref|YP_004781413.1| - 5.1e-09 36.2 1.6 1e-08 35.2 0.0 2.0 3 0 0 3 3 3 1 Possible tRNA binding domain Acetyltransf_7 PF13508.7 gi|347523843|ref|YP_004781413.1| - 7.4e-08 32.7 0.0 6.5e-07 29.7 0.0 2.7 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|347523843|ref|YP_004781413.1| - 1.7e-07 31.5 0.1 7.3e-07 29.4 0.1 2.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|347523843|ref|YP_004781413.1| - 0.0009 19.2 0.0 0.0024 17.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|347523843|ref|YP_004781413.1| - 0.0021 18.1 0.0 0.01 15.9 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|347523843|ref|YP_004781413.1| - 0.016 15.4 0.0 0.044 13.9 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Myb_DNA-binding PF00249.31 gi|347523843|ref|YP_004781413.1| - 0.024 14.8 0.4 0.063 13.5 0.4 1.8 1 0 0 1 1 1 0 Myb-like DNA-binding domain Sigma70_r4_2 PF08281.12 gi|347523843|ref|YP_004781413.1| - 0.04 13.6 0.1 0.23 11.1 0.1 2.4 1 1 1 2 2 2 0 Sigma-70, region 4 DUF3482 PF11981.8 gi|347523843|ref|YP_004781413.1| - 0.057 12.8 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) FR47 PF08445.10 gi|347523843|ref|YP_004781413.1| - 0.077 13.0 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 FR47-like protein HTH_23 PF13384.6 gi|347523843|ref|YP_004781413.1| - 0.08 12.8 0.2 0.58 10.0 0.1 2.6 2 1 0 2 2 2 0 Homeodomain-like domain ERCC4 PF02732.15 gi|347523844|ref|YP_004781414.1| - 3.4e-18 66.3 0.0 4.6e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|347523844|ref|YP_004781414.1| - 3.4e-11 43.1 0.0 7.6e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|347523844|ref|YP_004781414.1| - 6e-11 42.8 0.1 1.5e-10 41.5 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|347523844|ref|YP_004781414.1| - 1.5e-07 31.0 0.0 6.6e-07 28.9 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|347523844|ref|YP_004781414.1| - 0.0057 16.9 0.1 0.052 13.8 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2513 PF10711.9 gi|347523844|ref|YP_004781414.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Trep_Strep PF09605.10 gi|347523845|ref|YP_004781415.1| - 0.003 17.6 2.0 0.0031 17.5 2.0 1.0 1 0 0 1 1 1 1 Hypothetical bacterial integral membrane protein (Trep_Strep) GHMP_kinases_C PF08544.13 gi|347523846|ref|YP_004781416.1| - 7.8e-08 32.6 0.1 1.7e-07 31.5 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|347523846|ref|YP_004781416.1| - 2.4e-06 27.7 0.4 2.4e-06 27.7 0.4 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain ATP-synt_DE PF00401.20 gi|347523846|ref|YP_004781416.1| - 0.51 10.7 3.2 1.6 9.1 0.4 2.5 2 0 0 2 2 2 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TYW3 PF02676.14 gi|347523847|ref|YP_004781417.1| - 1.9e-36 125.4 0.0 4.7e-36 124.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase TYW3 zf-Di19 PF05605.12 gi|347523848|ref|YP_004781418.1| - 7.5e-05 22.9 0.0 8.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.6 gi|347523848|ref|YP_004781418.1| - 0.00082 20.0 0.2 0.0012 19.5 0.2 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|347523848|ref|YP_004781418.1| - 0.017 15.5 0.2 0.025 15.0 0.2 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type DUF2256 PF10013.9 gi|347523848|ref|YP_004781418.1| - 0.071 13.2 0.1 0.11 12.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-C2H2_jaz PF12171.8 gi|347523848|ref|YP_004781418.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.6 gi|347523848|ref|YP_004781418.1| - 0.24 11.3 2.7 0.6 10.1 2.7 1.7 1 1 0 1 1 1 0 zinc-finger of a C2HC-type Fe_dep_repress PF01325.19 gi|347523850|ref|YP_004781420.1| - 2.1e-18 66.3 0.1 3.1e-18 65.7 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|347523850|ref|YP_004781420.1| - 2.8e-18 65.7 0.0 7.1e-18 64.5 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|347523850|ref|YP_004781420.1| - 8.2e-08 32.0 0.0 1.7e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|347523850|ref|YP_004781420.1| - 2.1e-07 30.8 0.0 3.5e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|347523850|ref|YP_004781420.1| - 3e-06 27.0 0.5 4.6e-06 26.4 0.5 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB IF2_N PF04760.15 gi|347523850|ref|YP_004781420.1| - 4.7e-06 26.3 0.4 2e-05 24.3 0.1 2.1 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region Rrf2 PF02082.20 gi|347523850|ref|YP_004781420.1| - 8.8e-06 26.0 0.0 1.4e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|347523850|ref|YP_004781420.1| - 1.1e-05 25.2 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|347523850|ref|YP_004781420.1| - 5.1e-05 22.8 0.0 0.00023 20.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|347523850|ref|YP_004781420.1| - 6.3e-05 22.5 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|347523850|ref|YP_004781420.1| - 0.00015 21.7 0.0 0.0003 20.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|347523850|ref|YP_004781420.1| - 0.00042 20.1 0.0 0.00076 19.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|347523850|ref|YP_004781420.1| - 0.00092 19.0 0.1 0.0016 18.3 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|347523850|ref|YP_004781420.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|347523850|ref|YP_004781420.1| - 0.0018 17.9 0.0 0.0035 17.0 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain FeoC PF09012.10 gi|347523850|ref|YP_004781420.1| - 0.0021 18.1 0.2 0.0057 16.7 0.0 1.9 2 0 0 2 2 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.16 gi|347523850|ref|YP_004781420.1| - 0.005 16.6 0.1 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 LexA DNA binding domain HTH_10 PF04967.12 gi|347523850|ref|YP_004781420.1| - 0.0053 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_micro PF17007.5 gi|347523850|ref|YP_004781420.1| - 0.011 14.6 0.1 0.012 14.5 0.1 1.1 1 0 0 1 1 1 0 HTH-like HTH_47 PF16221.5 gi|347523850|ref|YP_004781420.1| - 0.016 14.8 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix HTH_27 PF13463.6 gi|347523850|ref|YP_004781420.1| - 0.016 15.7 0.0 0.024 15.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|347523850|ref|YP_004781420.1| - 0.023 14.7 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|347523850|ref|YP_004781420.1| - 0.026 14.5 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain SMC_ScpB PF04079.16 gi|347523850|ref|YP_004781420.1| - 0.034 13.8 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB Penicillinase_R PF03965.16 gi|347523850|ref|YP_004781420.1| - 0.041 14.2 0.0 0.059 13.7 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor ANT PF03374.14 gi|347523850|ref|YP_004781420.1| - 0.041 14.2 0.0 0.19 12.1 0.0 1.8 2 0 0 2 2 2 0 Phage antirepressor protein KilAC domain DUF2250 PF10007.9 gi|347523850|ref|YP_004781420.1| - 0.053 13.6 0.3 0.089 12.9 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_40 PF14493.6 gi|347523850|ref|YP_004781420.1| - 0.074 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|347523850|ref|YP_004781420.1| - 0.079 12.8 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain AbiEi_4 PF13338.6 gi|347523850|ref|YP_004781420.1| - 0.091 12.9 0.5 0.76 10.0 0.0 2.4 3 0 0 3 3 2 0 Transcriptional regulator, AbiEi antitoxin HTH_6 PF01418.17 gi|347523850|ref|YP_004781420.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_28 PF13518.6 gi|347523850|ref|YP_004781420.1| - 0.11 12.7 0.0 0.27 11.4 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain Citrate_synt PF00285.21 gi|347523852|ref|YP_004781422.1| - 3.7e-114 381.6 0.1 4.2e-114 381.4 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TPR_10 PF13374.6 gi|347523852|ref|YP_004781422.1| - 0.017 15.0 2.3 0.86 9.6 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Sec16_C PF12931.7 gi|347523852|ref|YP_004781422.1| - 0.15 11.7 0.0 0.33 10.6 0.0 1.5 1 1 0 1 1 1 0 Sec23-binding domain of Sec16 SNARE_assoc PF09335.11 gi|347523853|ref|YP_004781423.1| - 1e-10 42.1 6.2 1e-10 42.1 6.2 2.2 1 1 1 2 2 2 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.11 gi|347523853|ref|YP_004781423.1| - 0.66 10.6 16.3 0.29 11.8 4.5 3.7 2 2 1 3 3 3 0 Putative small multi-drug export protein DMRL_synthase PF00885.19 gi|347523854|ref|YP_004781424.1| - 1.1e-11 44.8 0.1 1.2e-11 44.6 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PNP_UDP_1 PF01048.20 gi|347523854|ref|YP_004781424.1| - 0.12 11.6 0.1 0.15 11.3 0.1 1.3 1 1 0 1 1 1 0 Phosphorylase superfamily DHBP_synthase PF00926.19 gi|347523855|ref|YP_004781425.1| - 1.6e-51 174.6 0.0 1.9e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase PhoU PF01895.19 gi|347523856|ref|YP_004781426.1| - 2.4e-15 56.7 5.8 8e-09 35.8 2.6 2.3 2 0 0 2 2 2 2 PhoU domain ABC_tran PF00005.27 gi|347523857|ref|YP_004781427.1| - 1.3e-32 113.2 0.0 1.7e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523857|ref|YP_004781427.1| - 1.9e-13 50.9 0.0 5.3e-08 33.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523857|ref|YP_004781427.1| - 2e-10 40.5 0.1 3.3e-09 36.5 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|347523857|ref|YP_004781427.1| - 6.3e-06 26.1 0.0 0.019 14.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|347523857|ref|YP_004781427.1| - 3.2e-05 23.6 0.0 5.9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|347523857|ref|YP_004781427.1| - 0.00022 21.8 0.0 0.00052 20.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|347523857|ref|YP_004781427.1| - 0.0005 19.3 0.0 0.00063 19.0 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_22 PF13401.6 gi|347523857|ref|YP_004781427.1| - 0.00052 20.3 0.0 0.0014 18.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|347523857|ref|YP_004781427.1| - 0.0021 18.0 0.0 0.0056 16.6 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase ABC_ATPase PF09818.9 gi|347523857|ref|YP_004781427.1| - 0.0024 16.8 0.1 0.08 11.7 0.0 2.2 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|347523857|ref|YP_004781427.1| - 0.0033 17.8 0.3 0.02 15.3 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|347523857|ref|YP_004781427.1| - 0.0042 17.6 0.0 0.013 16.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|347523857|ref|YP_004781427.1| - 0.0058 16.2 0.2 0.13 11.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|347523857|ref|YP_004781427.1| - 0.0077 16.0 0.1 0.034 13.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|347523857|ref|YP_004781427.1| - 0.011 15.5 0.0 0.03 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|347523857|ref|YP_004781427.1| - 0.014 15.6 0.0 0.022 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|347523857|ref|YP_004781427.1| - 0.015 15.1 0.0 0.042 13.6 0.0 1.8 2 0 0 2 2 2 0 Cytidylate kinase ATPase_2 PF01637.18 gi|347523857|ref|YP_004781427.1| - 0.023 14.6 0.1 0.16 11.9 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|347523857|ref|YP_004781427.1| - 0.024 14.5 0.0 0.095 12.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain TniB PF05621.11 gi|347523857|ref|YP_004781427.1| - 0.038 13.4 0.0 6.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein SbcCD_C PF13558.6 gi|347523857|ref|YP_004781427.1| - 0.058 13.6 0.0 1 9.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PRK PF00485.18 gi|347523857|ref|YP_004781427.1| - 0.062 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|347523857|ref|YP_004781427.1| - 0.064 13.7 0.1 2.7 8.4 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|347523857|ref|YP_004781427.1| - 0.083 13.0 0.1 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain T2SSE PF00437.20 gi|347523857|ref|YP_004781427.1| - 0.084 11.9 0.1 0.21 10.6 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|347523857|ref|YP_004781427.1| - 0.1 12.5 0.0 0.44 10.4 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_PrkA PF08298.11 gi|347523857|ref|YP_004781427.1| - 0.11 11.3 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain cobW PF02492.19 gi|347523857|ref|YP_004781427.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|347523857|ref|YP_004781427.1| - 0.16 12.0 0.1 0.44 10.6 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AA_kinase PF00696.28 gi|347523858|ref|YP_004781428.1| - 2.9e-48 164.6 0.1 6.1e-48 163.5 0.0 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|347523858|ref|YP_004781428.1| - 2e-05 24.3 0.7 0.00078 19.2 0.3 3.0 3 0 0 3 3 3 1 ACT domain ACT PF01842.25 gi|347523858|ref|YP_004781428.1| - 0.011 15.5 0.7 0.13 12.0 0.3 2.6 2 0 0 2 2 2 0 ACT domain KH_5 PF13184.6 gi|347523858|ref|YP_004781428.1| - 0.097 12.8 0.2 0.8 9.8 0.1 2.4 2 0 0 2 2 2 0 NusA-like KH domain DUF5612 PF18462.1 gi|347523858|ref|YP_004781428.1| - 0.22 11.3 4.6 0.61 9.9 1.5 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF5612) DUF134 PF02001.16 gi|347523859|ref|YP_004781429.1| - 3.3e-24 85.3 0.0 4e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|347523859|ref|YP_004781429.1| - 5.9e-08 32.3 0.2 9.1e-08 31.7 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|347523859|ref|YP_004781429.1| - 3.7e-07 29.6 0.1 5.5e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|347523859|ref|YP_004781429.1| - 0.00017 21.2 0.1 0.00027 20.6 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|347523859|ref|YP_004781429.1| - 0.0005 20.0 0.3 0.00058 19.8 0.3 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_31 PF13560.6 gi|347523859|ref|YP_004781429.1| - 0.00062 20.1 0.1 0.00082 19.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|347523859|ref|YP_004781429.1| - 0.0017 18.3 0.2 0.0022 17.9 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_psq PF05225.16 gi|347523859|ref|YP_004781429.1| - 0.0017 18.0 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain DUF1492 PF07374.11 gi|347523859|ref|YP_004781429.1| - 0.0038 17.4 0.0 0.0044 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) HTH_28 PF13518.6 gi|347523859|ref|YP_004781429.1| - 0.0065 16.6 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|347523859|ref|YP_004781429.1| - 0.0084 16.1 0.2 0.019 15.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix DUF2857 PF11198.8 gi|347523859|ref|YP_004781429.1| - 0.018 14.8 0.1 0.074 12.8 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2857) HTH_Crp_2 PF13545.6 gi|347523859|ref|YP_004781429.1| - 0.021 14.8 0.1 0.031 14.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|347523859|ref|YP_004781429.1| - 0.033 14.4 0.1 0.068 13.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|347523859|ref|YP_004781429.1| - 0.039 14.0 0.1 0.039 14.0 0.1 1.5 2 0 0 2 2 1 0 Winged helix-turn helix HTH_Tnp_1_2 PF13022.6 gi|347523859|ref|YP_004781429.1| - 0.056 13.6 0.0 0.071 13.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_10 PF04967.12 gi|347523859|ref|YP_004781429.1| - 0.057 13.2 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.6 gi|347523859|ref|YP_004781429.1| - 0.071 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|347523859|ref|YP_004781429.1| - 0.071 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|347523859|ref|YP_004781429.1| - 0.1 12.4 0.2 0.18 11.7 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family MarR_2 PF12802.7 gi|347523859|ref|YP_004781429.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 1 0 1 1 1 0 MarR family Helicase_RecD PF05127.14 gi|347523860|ref|YP_004781430.1| - 1.3e-40 139.2 0.0 2.1e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|347523860|ref|YP_004781430.1| - 8.4e-17 61.3 2.1 2.9e-07 30.1 0.0 3.2 2 1 1 3 3 3 3 GNAT acetyltransferase 2 AAA_30 PF13604.6 gi|347523860|ref|YP_004781430.1| - 5.5e-06 26.2 0.2 2.3e-05 24.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|347523860|ref|YP_004781430.1| - 1.7e-05 25.1 0.2 0.00031 21.0 0.0 2.7 2 1 1 3 3 3 1 AAA domain DUF1726 PF08351.11 gi|347523860|ref|YP_004781430.1| - 0.00016 21.6 0.0 0.00032 20.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.7 gi|347523860|ref|YP_004781430.1| - 0.0002 21.7 0.1 0.00052 20.4 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|347523860|ref|YP_004781430.1| - 0.0013 18.9 0.1 0.0032 17.7 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_16 PF13191.6 gi|347523860|ref|YP_004781430.1| - 0.0015 18.9 0.3 0.0015 18.9 0.3 2.8 2 1 0 3 3 3 1 AAA ATPase domain Sigma70_r4 PF04545.16 gi|347523860|ref|YP_004781430.1| - 0.038 13.5 1.7 0.05 13.1 0.3 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 AAA_29 PF13555.6 gi|347523860|ref|YP_004781430.1| - 0.056 13.2 0.0 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain FR47 PF08445.10 gi|347523860|ref|YP_004781430.1| - 0.061 13.3 0.2 0.21 11.6 0.2 1.9 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_10 PF13673.7 gi|347523860|ref|YP_004781430.1| - 0.1 12.5 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TIP49 PF06068.13 gi|347523860|ref|YP_004781430.1| - 0.23 10.6 0.0 0.41 9.8 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain Cupin_3 PF05899.12 gi|347523861|ref|YP_004781431.1| - 0.0027 17.4 0.0 1.3 8.7 0.0 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF861) Inos-1-P_synth PF01658.17 gi|347523862|ref|YP_004781432.1| - 7.3e-21 74.5 0.0 1.3e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase FeoB_N PF02421.18 gi|347523864|ref|YP_004781434.1| - 2.2e-53 180.0 0.0 4.3e-53 179.0 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|347523864|ref|YP_004781434.1| - 5.8e-28 97.4 16.0 4.4e-19 68.8 1.0 3.1 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|347523864|ref|YP_004781434.1| - 3.4e-18 65.8 0.0 7.7e-18 64.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|347523864|ref|YP_004781434.1| - 2.5e-11 43.9 0.2 5.1e-11 43.0 0.2 1.5 1 0 0 1 1 1 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|347523864|ref|YP_004781434.1| - 1.8e-10 40.3 0.3 9.4e-10 38.0 0.3 2.3 1 0 0 1 1 1 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|347523864|ref|YP_004781434.1| - 0.00081 19.3 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|347523864|ref|YP_004781434.1| - 0.0063 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|347523864|ref|YP_004781434.1| - 0.17 11.9 0.0 6.2 6.8 0.0 2.3 1 1 1 2 2 2 0 Dynamin family tRNA_synthFbeta PF17759.1 gi|347523865|ref|YP_004781435.1| - 1e-38 133.0 0.0 3.7e-38 131.1 0.0 1.8 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|347523865|ref|YP_004781435.1| - 6.8e-16 58.3 0.1 3.1e-11 43.4 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|347523865|ref|YP_004781435.1| - 4.8e-08 32.9 0.0 7.8e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|347523865|ref|YP_004781435.1| - 5.4e-06 26.5 0.0 0.00011 22.3 0.0 2.7 1 1 0 1 1 1 1 Phe-tRNA synthetase beta subunit B1 domain RsgA_GTPase PF03193.16 gi|347523866|ref|YP_004781436.1| - 1.2e-14 54.6 0.0 1.9e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|347523866|ref|YP_004781436.1| - 4.4e-14 52.5 0.1 4.2e-10 39.7 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|347523866|ref|YP_004781436.1| - 1.6e-09 37.5 0.2 0.0018 17.8 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|347523866|ref|YP_004781436.1| - 1.6e-07 31.6 0.5 0.0095 16.0 0.1 2.7 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|347523866|ref|YP_004781436.1| - 7e-06 25.7 0.5 3.6e-05 23.4 0.1 1.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|347523866|ref|YP_004781436.1| - 0.00041 20.0 0.2 0.05 13.2 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|347523866|ref|YP_004781436.1| - 0.0059 17.0 0.2 0.016 15.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain MeaB PF03308.16 gi|347523866|ref|YP_004781436.1| - 0.0079 15.2 0.4 0.067 12.2 0.1 2.1 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|347523866|ref|YP_004781436.1| - 0.016 15.5 0.2 0.39 11.0 0.1 2.4 1 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|347523866|ref|YP_004781436.1| - 0.027 15.0 0.0 0.093 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain Arf PF00025.21 gi|347523866|ref|YP_004781436.1| - 0.061 12.8 0.2 1.8 8.0 0.0 2.2 1 1 0 2 2 2 0 ADP-ribosylation factor family IIGP PF05049.13 gi|347523866|ref|YP_004781436.1| - 0.063 12.3 0.0 0.092 11.8 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_28 PF13521.6 gi|347523866|ref|YP_004781436.1| - 0.08 13.2 2.0 0.66 10.2 0.1 2.9 3 1 0 3 3 3 0 AAA domain KTI12 PF08433.10 gi|347523866|ref|YP_004781436.1| - 0.095 12.1 0.1 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF463 PF04317.12 gi|347523866|ref|YP_004781436.1| - 0.13 11.2 0.4 11 4.8 0.1 2.1 2 0 0 2 2 2 0 YcjX-like family, DUF463 AAA_30 PF13604.6 gi|347523866|ref|YP_004781436.1| - 0.18 11.5 0.1 0.42 10.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain zf-H2C2 PF09337.10 gi|347523866|ref|YP_004781436.1| - 0.19 12.0 0.1 38 4.6 0.0 2.6 2 0 0 2 2 2 0 H2C2 zinc finger HypA PF01155.19 gi|347523867|ref|YP_004781437.1| - 2.9e-05 24.0 0.0 3.9e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|347523867|ref|YP_004781437.1| - 9e-05 22.5 1.7 0.00018 21.6 1.7 1.5 1 0 0 1 1 1 1 Zinc ribbon domain FYDLN_acid PF09538.10 gi|347523867|ref|YP_004781437.1| - 0.02 15.6 2.8 0.034 14.8 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_4 PF13717.6 gi|347523867|ref|YP_004781437.1| - 0.024 14.5 2.3 2.5 8.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|347523867|ref|YP_004781437.1| - 0.033 14.2 2.9 0.076 13.1 2.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.18 gi|347523867|ref|YP_004781437.1| - 0.093 12.6 1.4 8.4 6.3 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) CSN8_PSD8_EIF3K PF10075.9 gi|347523867|ref|YP_004781437.1| - 0.14 12.2 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 CSN8/PSMD8/EIF3K family PhnA_Zn_Ribbon PF08274.12 gi|347523867|ref|YP_004781437.1| - 0.18 11.8 3.4 0.54 10.3 0.4 2.6 3 0 0 3 3 3 0 PhnA Zinc-Ribbon DUF1451 PF07295.11 gi|347523867|ref|YP_004781437.1| - 0.3 11.1 2.3 0.49 10.4 1.9 1.5 1 1 0 1 1 1 0 Zinc-ribbon containing domain zf_C2H2_10 PF18414.1 gi|347523867|ref|YP_004781437.1| - 0.46 10.1 2.4 15 5.2 0.6 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger Rubredoxin_2 PF18073.1 gi|347523867|ref|YP_004781437.1| - 2.3 8.0 5.2 4.8 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_5 PF13719.6 gi|347523867|ref|YP_004781437.1| - 4.7 7.1 9.3 2.3 8.0 0.5 2.3 1 1 1 2 2 2 0 zinc-ribbon domain NapD PF03927.13 gi|347523868|ref|YP_004781438.1| - 0.0083 16.2 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 1 NapD protein Fer4_5 PF12801.7 gi|347523869|ref|YP_004781439.1| - 8.2e-10 38.5 22.2 5.5e-09 35.8 0.8 4.8 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347523869|ref|YP_004781439.1| - 2e-08 34.7 9.4 0.0013 19.3 0.3 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523869|ref|YP_004781439.1| - 8.4e-08 31.7 16.9 0.0002 21.0 1.9 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|347523869|ref|YP_004781439.1| - 1.2e-07 31.8 21.5 4.1e-06 26.8 11.8 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347523869|ref|YP_004781439.1| - 9.5e-07 28.9 10.0 9.5e-07 28.9 10.0 2.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|347523869|ref|YP_004781439.1| - 4.7e-05 23.4 15.9 0.012 15.7 5.6 3.3 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347523869|ref|YP_004781439.1| - 8.5e-05 22.9 11.8 0.012 16.1 0.1 2.8 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523869|ref|YP_004781439.1| - 0.00011 22.6 12.6 0.061 13.9 0.7 3.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523869|ref|YP_004781439.1| - 0.0002 22.2 15.0 0.0063 17.4 0.7 3.6 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|347523869|ref|YP_004781439.1| - 0.0028 17.8 14.7 0.005 17.0 10.2 3.0 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347523869|ref|YP_004781439.1| - 0.0038 17.6 2.5 0.0038 17.6 2.5 3.1 4 0 0 4 4 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347523869|ref|YP_004781439.1| - 0.0048 16.9 2.0 0.0048 16.9 2.0 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347523869|ref|YP_004781439.1| - 0.019 15.0 2.5 0.019 15.0 2.5 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|347523869|ref|YP_004781439.1| - 0.64 11.1 28.6 0.13 13.2 4.9 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|347523869|ref|YP_004781439.1| - 1.1 10.0 9.0 3.6 8.4 0.8 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|347523869|ref|YP_004781439.1| - 5.3 7.7 13.6 1.5 9.4 1.1 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|347523870|ref|YP_004781440.1| - 2.7e-16 58.6 35.7 1.3e-07 31.1 3.7 5.4 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347523870|ref|YP_004781440.1| - 4.6e-16 59.1 43.3 1.7e-07 31.7 8.0 3.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347523870|ref|YP_004781440.1| - 1.6e-15 56.4 29.3 1.8e-05 24.6 2.5 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347523870|ref|YP_004781440.1| - 2.8e-15 56.2 15.0 2.1e-07 31.0 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523870|ref|YP_004781440.1| - 1.6e-12 47.4 24.5 1.5e-07 31.4 8.2 3.9 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347523870|ref|YP_004781440.1| - 3.4e-11 42.7 34.2 4.7e-05 23.6 4.5 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347523870|ref|YP_004781440.1| - 5e-10 39.4 27.1 2e-05 24.6 8.2 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523870|ref|YP_004781440.1| - 6.9e-09 36.5 25.0 0.00094 20.1 0.2 4.4 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|347523870|ref|YP_004781440.1| - 3.2e-08 33.2 39.3 0.00027 20.8 4.7 4.9 5 1 0 5 5 4 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347523870|ref|YP_004781440.1| - 1.2e-07 32.1 28.4 0.0011 19.3 10.3 4.0 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347523870|ref|YP_004781440.1| - 4e-06 27.4 40.6 0.0074 17.1 7.2 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|347523870|ref|YP_004781440.1| - 0.00087 19.8 29.9 0.18 12.3 3.9 4.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain TAT_signal PF10518.9 gi|347523870|ref|YP_004781440.1| - 0.0034 17.2 1.2 0.0055 16.5 1.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.6 gi|347523870|ref|YP_004781440.1| - 0.1 13.3 0.3 0.1 13.3 0.3 4.0 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|347523870|ref|YP_004781440.1| - 9.6 7.1 29.6 65 4.5 0.7 4.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|347523871|ref|YP_004781441.1| - 8.1e-48 163.4 0.0 2.2e-47 162.0 0.0 1.7 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|347523871|ref|YP_004781441.1| - 2.6e-19 69.3 0.0 6.6e-19 68.0 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|347523871|ref|YP_004781441.1| - 2e-10 40.5 0.3 5.6e-10 39.1 0.3 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FMN_dh PF01070.18 gi|347523871|ref|YP_004781441.1| - 4e-05 22.8 0.4 0.0029 16.7 0.3 2.3 2 0 0 2 2 2 2 FMN-dependent dehydrogenase TAT_signal PF10518.9 gi|347523871|ref|YP_004781441.1| - 0.0022 17.8 2.2 0.0045 16.8 2.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MazE_antitoxin PF04014.18 gi|347523871|ref|YP_004781441.1| - 0.021 14.8 0.3 0.021 14.8 0.3 1.9 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Reeler PF02014.16 gi|347523873|ref|YP_004781443.1| - 4e-05 24.4 0.0 0.00011 22.9 0.0 1.7 1 1 0 1 1 1 1 Reeler domain DUF4307 PF14155.6 gi|347523873|ref|YP_004781443.1| - 0.0075 16.1 1.9 0.0075 16.1 1.9 3.1 3 1 0 3 3 3 2 Domain of unknown function (DUF4307) Multi-haem_cyto PF13447.6 gi|347523874|ref|YP_004781444.1| - 1.6e-25 89.9 7.3 9.3e-21 74.3 1.3 4.2 4 0 0 4 4 4 1 Seven times multi-haem cytochrome CxxCH Cytochrome_C7 PF14522.6 gi|347523874|ref|YP_004781444.1| - 5.2e-09 36.0 15.0 0.0027 17.6 0.3 5.4 3 2 2 5 5 5 3 Cytochrome c7 and related cytochrome c NPV_P10 PF05531.12 gi|347523874|ref|YP_004781444.1| - 6.8e-08 32.9 11.5 0.0013 19.2 2.9 3.9 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|347523874|ref|YP_004781444.1| - 1.7e-07 31.3 10.5 0.00082 19.4 0.6 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|347523874|ref|YP_004781444.1| - 3.1e-07 30.5 2.2 0.0044 17.1 0.1 2.5 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|347523874|ref|YP_004781444.1| - 8.1e-07 28.2 18.9 6.5e-05 22.0 6.0 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|347523874|ref|YP_004781444.1| - 2.7e-06 27.6 5.0 0.0023 18.1 1.4 2.6 2 0 0 2 2 2 2 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|347523874|ref|YP_004781444.1| - 4.3e-06 26.8 15.8 0.0026 17.8 8.7 2.9 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2353 PF09789.9 gi|347523874|ref|YP_004781444.1| - 4.4e-06 26.3 4.2 6.9e-06 25.6 4.2 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) AAA_13 PF13166.6 gi|347523874|ref|YP_004781444.1| - 5.5e-06 25.3 7.7 8.8e-06 24.7 7.7 1.2 1 0 0 1 1 1 1 AAA domain BLOC1_2 PF10046.9 gi|347523874|ref|YP_004781444.1| - 6.1e-06 26.5 11.8 0.11 12.8 0.3 3.6 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 LPP PF04728.13 gi|347523874|ref|YP_004781444.1| - 1.7e-05 25.1 13.0 0.07 13.5 0.1 5.2 2 1 5 7 7 6 2 Lipoprotein leucine-zipper ZapB PF06005.12 gi|347523874|ref|YP_004781444.1| - 2e-05 24.9 12.2 0.011 16.1 0.4 3.3 2 1 2 4 4 3 2 Cell division protein ZapB Laminin_II PF06009.12 gi|347523874|ref|YP_004781444.1| - 3e-05 24.0 12.7 0.00023 21.2 5.1 3.0 1 1 2 3 3 3 2 Laminin Domain II DUF5082 PF16888.5 gi|347523874|ref|YP_004781444.1| - 5.7e-05 23.4 6.7 0.031 14.6 1.2 3.3 2 1 1 3 3 3 1 Domain of unknown function (DUF5082) GAS PF13851.6 gi|347523874|ref|YP_004781444.1| - 0.00016 21.1 11.3 0.00063 19.2 11.3 1.9 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding SlyX PF04102.12 gi|347523874|ref|YP_004781444.1| - 0.00017 22.1 5.0 0.024 15.2 0.3 3.7 2 1 0 3 3 2 1 SlyX ABC_tran_CTD PF16326.5 gi|347523874|ref|YP_004781444.1| - 0.00018 21.6 10.3 0.14 12.4 0.7 4.3 2 1 2 4 4 3 2 ABC transporter C-terminal domain Myosin_tail_1 PF01576.19 gi|347523874|ref|YP_004781444.1| - 0.00019 19.4 12.8 0.00027 18.9 12.8 1.1 1 0 0 1 1 1 1 Myosin tail DUF2730 PF10805.8 gi|347523874|ref|YP_004781444.1| - 0.00035 20.6 11.4 0.02 15.0 0.7 3.5 1 1 1 3 3 3 1 Protein of unknown function (DUF2730) Laminin_I PF06008.14 gi|347523874|ref|YP_004781444.1| - 0.00045 20.0 7.2 0.0013 18.5 7.2 1.7 1 1 0 1 1 1 1 Laminin Domain I DUF4559 PF15112.6 gi|347523874|ref|YP_004781444.1| - 0.00047 19.9 5.4 0.00093 19.0 5.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) Seryl_tRNA_N PF02403.22 gi|347523874|ref|YP_004781444.1| - 0.00055 20.1 15.4 0.0048 17.1 4.4 3.3 1 1 2 3 3 3 2 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.11 gi|347523874|ref|YP_004781444.1| - 0.00056 20.2 21.4 0.26 11.7 0.2 5.3 2 1 3 5 5 4 1 Flagella accessory protein C (FlaC) EzrA PF06160.12 gi|347523874|ref|YP_004781444.1| - 0.00057 18.2 9.9 0.0031 15.8 9.9 1.9 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA TolA_bind_tri PF16331.5 gi|347523874|ref|YP_004781444.1| - 0.00062 19.8 0.3 0.32 11.1 0.1 2.9 1 1 1 2 2 2 1 TolA binding protein trimerisation DUF3584 PF12128.8 gi|347523874|ref|YP_004781444.1| - 0.00066 17.4 6.5 0.0019 15.8 6.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) HemX PF04375.14 gi|347523874|ref|YP_004781444.1| - 0.0009 18.6 10.8 0.065 12.5 0.5 3.1 2 1 1 3 3 3 2 HemX, putative uroporphyrinogen-III C-methyltransferase DUF16 PF01519.16 gi|347523874|ref|YP_004781444.1| - 0.00092 19.7 11.1 0.23 12.0 2.7 3.0 2 1 1 3 3 2 2 Protein of unknown function DUF16 DUF724 PF05266.14 gi|347523874|ref|YP_004781444.1| - 0.00095 19.0 11.5 0.02 14.7 0.8 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF724) COG5 PF10392.9 gi|347523874|ref|YP_004781444.1| - 0.00095 19.3 7.0 0.065 13.4 1.3 2.7 1 1 2 3 3 3 1 Golgi transport complex subunit 5 Atg14 PF10186.9 gi|347523874|ref|YP_004781444.1| - 0.00096 18.3 5.1 0.0022 17.1 1.4 2.1 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 IFT57 PF10498.9 gi|347523874|ref|YP_004781444.1| - 0.001 18.1 7.8 0.0095 14.9 7.0 2.1 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 TPR_MLP1_2 PF07926.12 gi|347523874|ref|YP_004781444.1| - 0.0011 19.0 21.5 0.004 17.2 9.7 2.7 2 1 1 3 3 2 2 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 gi|347523874|ref|YP_004781444.1| - 0.0012 18.6 5.9 0.0033 17.2 3.6 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) Nup88 PF10168.9 gi|347523874|ref|YP_004781444.1| - 0.0013 16.7 4.9 0.0018 16.2 4.9 1.1 1 0 0 1 1 1 1 Nuclear pore component V_ATPase_I PF01496.19 gi|347523874|ref|YP_004781444.1| - 0.0013 16.8 5.7 0.0044 15.0 1.7 2.1 1 1 1 2 2 2 1 V-type ATPase 116kDa subunit family XhlA PF10779.9 gi|347523874|ref|YP_004781444.1| - 0.0013 18.9 10.5 0.23 11.7 0.3 3.6 2 1 2 4 4 3 2 Haemolysin XhlA HOOK PF05622.12 gi|347523874|ref|YP_004781444.1| - 0.0019 16.5 7.9 0.0029 15.9 7.9 1.2 1 0 0 1 1 1 1 HOOK protein MAD PF05557.13 gi|347523874|ref|YP_004781444.1| - 0.0019 16.7 6.7 0.0033 15.9 6.7 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein ADIP PF11559.8 gi|347523874|ref|YP_004781444.1| - 0.0019 18.3 4.7 0.055 13.6 0.4 2.7 2 1 1 3 3 2 1 Afadin- and alpha -actinin-Binding FapA PF03961.13 gi|347523874|ref|YP_004781444.1| - 0.0019 16.9 10.2 0.1 11.2 0.7 2.2 1 1 1 2 2 2 2 Flagellar Assembly Protein A ATG16 PF08614.11 gi|347523874|ref|YP_004781444.1| - 0.0021 18.3 10.8 0.18 12.0 1.8 2.5 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Prominin PF05478.11 gi|347523874|ref|YP_004781444.1| - 0.0022 16.1 3.0 0.0039 15.2 3.0 1.3 1 0 0 1 1 1 1 Prominin PLU-1 PF08429.11 gi|347523874|ref|YP_004781444.1| - 0.0023 17.2 5.2 0.005 16.1 5.2 1.5 1 0 0 1 1 1 1 PLU-1-like protein Cytochrome_C554 PF13435.6 gi|347523874|ref|YP_004781444.1| - 0.0026 18.6 21.9 0.049 14.5 0.1 6.2 5 1 1 6 6 4 1 Cytochrome c554 and c-prime NleF_casp_inhib PF16809.5 gi|347523874|ref|YP_004781444.1| - 0.0028 17.6 4.4 0.12 12.3 1.6 2.5 1 1 1 2 2 2 1 NleF caspase inhibitor MscS_porin PF12795.7 gi|347523874|ref|YP_004781444.1| - 0.0033 17.0 6.3 0.06 12.9 7.4 2.0 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain SHE3 PF17078.5 gi|347523874|ref|YP_004781444.1| - 0.0033 17.2 5.5 0.0083 15.9 5.5 1.7 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 Snapin_Pallidin PF14712.6 gi|347523874|ref|YP_004781444.1| - 0.0036 17.7 9.4 0.99 9.9 6.6 3.1 1 1 2 3 3 3 0 Snapin/Pallidin COG2 PF06148.11 gi|347523874|ref|YP_004781444.1| - 0.0036 17.4 12.0 0.4 10.8 2.0 3.3 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 Sec34 PF04136.15 gi|347523874|ref|YP_004781444.1| - 0.0038 17.1 8.2 0.076 12.9 0.9 2.9 2 1 1 3 3 2 1 Sec34-like family HsbA PF12296.8 gi|347523874|ref|YP_004781444.1| - 0.004 17.6 1.1 3.6 8.0 0.1 2.9 2 1 1 3 3 2 0 Hydrophobic surface binding protein A KxDL PF10241.9 gi|347523874|ref|YP_004781444.1| - 0.0043 17.3 1.9 0.091 13.1 0.2 2.5 1 1 1 2 2 2 1 Uncharacterized conserved protein Tropomyosin PF00261.20 gi|347523874|ref|YP_004781444.1| - 0.0044 16.4 13.0 0.008 15.6 13.0 1.4 1 0 0 1 1 1 1 Tropomyosin AIP3 PF03915.13 gi|347523874|ref|YP_004781444.1| - 0.0044 16.2 6.7 0.0075 15.4 6.7 1.3 1 0 0 1 1 1 1 Actin interacting protein 3 Fez1 PF06818.15 gi|347523874|ref|YP_004781444.1| - 0.0046 17.4 10.4 0.071 13.6 1.5 2.4 1 1 1 2 2 2 1 Fez1 Jnk-SapK_ap_N PF09744.9 gi|347523874|ref|YP_004781444.1| - 0.005 17.1 8.8 0.044 14.0 1.8 2.4 1 1 1 2 2 2 1 JNK_SAPK-associated protein-1 TMF_DNA_bd PF12329.8 gi|347523874|ref|YP_004781444.1| - 0.0052 16.8 1.2 0.0052 16.8 1.2 4.1 3 1 1 4 4 3 1 TATA element modulatory factor 1 DNA binding DUF4618 PF15397.6 gi|347523874|ref|YP_004781444.1| - 0.0053 16.2 14.2 0.23 10.8 4.4 2.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) RmuC PF02646.16 gi|347523874|ref|YP_004781444.1| - 0.0057 15.8 6.7 0.24 10.5 1.4 2.6 1 1 1 2 2 2 1 RmuC family Cytochrom_c3_2 PF14537.6 gi|347523874|ref|YP_004781444.1| - 0.0069 16.8 24.6 1.1 9.8 5.1 5.7 3 2 1 4 4 4 0 Cytochrome c3 Tropomyosin_1 PF12718.7 gi|347523874|ref|YP_004781444.1| - 0.0073 16.5 12.6 0.026 14.7 12.2 2.0 1 1 0 1 1 1 1 Tropomyosin like Occludin_ELL PF07303.13 gi|347523874|ref|YP_004781444.1| - 0.0091 16.7 5.5 0.085 13.6 0.4 3.5 1 1 3 4 4 3 1 Occludin homology domain Syntaxin-6_N PF09177.11 gi|347523874|ref|YP_004781444.1| - 0.0095 16.5 8.0 0.15 12.6 1.2 2.5 1 1 1 2 2 2 2 Syntaxin 6, N-terminal Yuri_gagarin PF15934.5 gi|347523874|ref|YP_004781444.1| - 0.0096 15.8 2.2 0.017 15.0 1.9 1.5 1 1 0 1 1 1 1 Yuri gagarin Bacillus_HBL PF05791.11 gi|347523874|ref|YP_004781444.1| - 0.011 15.6 5.7 0.12 12.2 0.9 3.3 3 1 1 4 4 3 0 Bacillus haemolytic enterotoxin (HBL) bZIP_1 PF00170.21 gi|347523874|ref|YP_004781444.1| - 0.012 15.6 16.3 0.36 11.0 0.7 4.3 2 2 1 4 4 3 0 bZIP transcription factor MCPsignal PF00015.21 gi|347523874|ref|YP_004781444.1| - 0.013 15.4 10.8 0.026 14.3 8.3 2.3 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain UPF0242 PF06785.11 gi|347523874|ref|YP_004781444.1| - 0.013 15.6 5.8 0.032 14.3 5.8 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FadA PF09403.10 gi|347523874|ref|YP_004781444.1| - 0.013 15.9 4.2 0.013 15.9 4.2 2.7 1 1 1 2 2 1 0 Adhesion protein FadA Syntaxin_2 PF14523.6 gi|347523874|ref|YP_004781444.1| - 0.014 15.8 5.2 0.14 12.5 1.2 2.6 1 1 1 2 2 2 0 Syntaxin-like protein Taxilin PF09728.9 gi|347523874|ref|YP_004781444.1| - 0.014 14.6 11.1 0.43 9.7 11.1 2.3 1 1 0 1 1 1 0 Myosin-like coiled-coil protein DUF812 PF05667.11 gi|347523874|ref|YP_004781444.1| - 0.015 14.3 15.5 0.15 10.9 5.6 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF812) APG6_N PF17675.1 gi|347523874|ref|YP_004781444.1| - 0.016 15.8 11.5 0.5 10.9 6.6 2.5 1 1 1 2 2 2 0 Apg6 coiled-coil region Mt_ATP-synt_D PF05873.12 gi|347523874|ref|YP_004781444.1| - 0.016 15.1 4.1 0.042 13.7 4.1 1.7 1 0 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) DUF948 PF06103.11 gi|347523874|ref|YP_004781444.1| - 0.021 15.1 0.3 0.021 15.1 0.3 4.0 2 1 2 4 4 2 0 Bacterial protein of unknown function (DUF948) MCC-bdg_PDZ PF10506.9 gi|347523874|ref|YP_004781444.1| - 0.024 14.7 0.9 0.024 14.7 0.9 3.4 4 1 0 4 4 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome HrpB7 PF09486.10 gi|347523874|ref|YP_004781444.1| - 0.024 15.0 1.4 0.46 10.9 0.4 2.2 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) TPD52 PF04201.15 gi|347523874|ref|YP_004781444.1| - 0.024 14.2 8.5 0.14 11.8 8.6 2.1 2 0 0 2 2 1 0 Tumour protein D52 family Nup54 PF13874.6 gi|347523874|ref|YP_004781444.1| - 0.024 14.7 3.2 0.53 10.4 1.1 2.4 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Dynactin_p22 PF07426.11 gi|347523874|ref|YP_004781444.1| - 0.024 14.5 9.8 1.6 8.6 9.8 3.3 1 1 0 1 1 1 0 Dynactin subunit p22 HAP1_N PF04849.13 gi|347523874|ref|YP_004781444.1| - 0.025 13.8 8.2 0.055 12.7 8.2 1.6 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Sec3_C PF09763.9 gi|347523874|ref|YP_004781444.1| - 0.025 13.0 6.1 0.073 11.4 0.5 2.1 1 1 1 2 2 2 0 Exocyst complex component Sec3 MbeD_MobD PF04899.12 gi|347523874|ref|YP_004781444.1| - 0.028 14.5 3.4 3.2 7.9 0.1 3.9 1 1 3 4 4 3 0 MbeD/MobD like FH2 PF02181.23 gi|347523874|ref|YP_004781444.1| - 0.03 13.4 7.3 1.6 7.8 3.5 2.3 1 1 1 2 2 2 0 Formin Homology 2 Domain ALIX_LYPXL_bnd PF13949.6 gi|347523874|ref|YP_004781444.1| - 0.03 13.6 5.6 0.053 12.8 5.6 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Phage_GP20 PF06810.11 gi|347523874|ref|YP_004781444.1| - 0.032 14.0 12.5 0.24 11.2 2.3 3.3 1 1 3 4 4 4 0 Phage minor structural protein GP20 DUF3450 PF11932.8 gi|347523874|ref|YP_004781444.1| - 0.032 13.5 7.2 0.34 10.2 2.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Noelin-1 PF12308.8 gi|347523874|ref|YP_004781444.1| - 0.039 13.9 2.8 0.38 10.8 0.5 2.7 1 1 0 2 2 2 0 Neurogenesis glycoprotein PI3K_P85_iSH2 PF16454.5 gi|347523874|ref|YP_004781444.1| - 0.049 13.2 3.3 0.097 12.3 0.6 2.3 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain IL11 PF07400.11 gi|347523874|ref|YP_004781444.1| - 0.051 13.2 0.8 11 5.7 0.1 2.5 1 1 1 2 2 2 0 Interleukin 11 PspA_IM30 PF04012.12 gi|347523874|ref|YP_004781444.1| - 0.053 13.1 16.8 0.83 9.2 8.3 2.4 1 1 1 2 2 2 0 PspA/IM30 family DUF4446 PF14584.6 gi|347523874|ref|YP_004781444.1| - 0.054 13.5 8.2 1.8 8.5 1.4 3.5 2 1 1 3 3 2 0 Protein of unknown function (DUF4446) Dor1 PF04124.12 gi|347523874|ref|YP_004781444.1| - 0.056 12.1 1.3 0.11 11.2 0.6 1.6 1 1 1 2 2 2 0 Dor1-like family Spectrin PF00435.21 gi|347523874|ref|YP_004781444.1| - 0.057 13.9 6.1 0.6 10.6 0.6 2.6 1 1 1 2 2 2 0 Spectrin repeat Golgin_A5 PF09787.9 gi|347523874|ref|YP_004781444.1| - 0.057 12.9 6.1 0.099 12.1 6.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF4795 PF16043.5 gi|347523874|ref|YP_004781444.1| - 0.058 13.0 10.8 0.089 12.4 5.7 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Filament PF00038.21 gi|347523874|ref|YP_004781444.1| - 0.059 13.0 8.5 4.8 6.7 2.5 2.1 1 1 0 1 1 1 0 Intermediate filament protein Talin_middle PF09141.10 gi|347523874|ref|YP_004781444.1| - 0.059 13.4 1.6 2.7 8.0 0.2 2.6 1 1 1 2 2 2 0 Talin, middle domain DUF3829 PF12889.7 gi|347523874|ref|YP_004781444.1| - 0.065 12.7 3.7 1.1 8.7 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) TACC_C PF05010.14 gi|347523874|ref|YP_004781444.1| - 0.066 13.0 8.7 0.14 12.0 8.7 1.5 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Allexi_40kDa PF05549.11 gi|347523874|ref|YP_004781444.1| - 0.066 12.7 4.5 0.91 9.0 1.8 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein DUF148 PF02520.17 gi|347523874|ref|YP_004781444.1| - 0.069 13.3 6.3 2.5 8.3 0.3 2.7 1 1 1 2 2 2 0 Domain of unknown function DUF148 Leu_zip PF15294.6 gi|347523874|ref|YP_004781444.1| - 0.075 12.5 10.0 0.13 11.8 10.0 1.3 1 0 0 1 1 1 0 Leucine zipper YabA PF06156.13 gi|347523874|ref|YP_004781444.1| - 0.078 13.6 11.2 1.7 9.3 1.2 3.3 2 1 1 3 3 2 0 Initiation control protein YabA Paired_CXXCH_1 PF09699.10 gi|347523874|ref|YP_004781444.1| - 0.081 12.7 29.9 0.97 9.2 2.9 7.2 6 1 1 7 7 7 0 Doubled CXXCH motif (Paired_CXXCH_1) TMPIT PF07851.13 gi|347523874|ref|YP_004781444.1| - 0.082 12.1 7.3 2.1 7.5 7.4 2.2 1 1 0 1 1 1 0 TMPIT-like protein APG17 PF04108.12 gi|347523874|ref|YP_004781444.1| - 0.089 11.9 6.8 0.11 11.6 3.0 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 COG6 PF06419.11 gi|347523874|ref|YP_004781444.1| - 0.09 11.0 6.0 0.14 10.4 0.9 2.2 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 MAP65_ASE1 PF03999.12 gi|347523874|ref|YP_004781444.1| - 0.11 11.1 3.5 0.23 10.1 3.5 1.4 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) KMP11 PF03037.16 gi|347523874|ref|YP_004781444.1| - 0.13 13.1 0.7 2.5 9.0 0.0 2.6 2 0 0 2 2 2 0 Kinetoplastid membrane protein 11 MIP-T3_C PF17749.1 gi|347523874|ref|YP_004781444.1| - 0.14 12.1 3.9 1 9.3 0.1 2.5 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region STAT_alpha PF01017.20 gi|347523874|ref|YP_004781444.1| - 0.14 12.0 2.4 0.34 10.8 1.4 2.1 1 1 0 1 1 1 0 STAT protein, all-alpha domain SKA1 PF07160.12 gi|347523874|ref|YP_004781444.1| - 0.16 11.8 8.5 4.1 7.2 8.7 2.2 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 1 HMMR_N PF15905.5 gi|347523874|ref|YP_004781444.1| - 0.17 11.3 14.4 0.4 10.1 14.4 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal TMF_TATA_bd PF12325.8 gi|347523874|ref|YP_004781444.1| - 0.18 12.1 19.5 0.15 12.3 7.0 3.3 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding ATP-synt_D PF01813.17 gi|347523874|ref|YP_004781444.1| - 0.18 11.6 9.0 0.86 9.4 6.8 2.9 2 1 0 2 2 1 0 ATP synthase subunit D Cob_adeno_trans PF01923.18 gi|347523874|ref|YP_004781444.1| - 0.2 11.8 3.3 9.9 6.3 0.2 2.5 1 1 0 2 2 2 0 Cobalamin adenosyltransferase DUF2203 PF09969.9 gi|347523874|ref|YP_004781444.1| - 0.2 12.4 8.5 4.6 8.0 2.2 2.6 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) CSN5_C PF18323.1 gi|347523874|ref|YP_004781444.1| - 0.21 12.6 4.0 2.4 9.1 0.2 2.7 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain HCMV_UL139 PF12507.8 gi|347523874|ref|YP_004781444.1| - 0.22 11.9 0.7 1.2 9.5 0.3 2.1 1 1 1 2 2 2 0 Human Cytomegalovirus UL139 protein CALCOCO1 PF07888.11 gi|347523874|ref|YP_004781444.1| - 0.23 10.3 7.8 0.4 9.5 7.8 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Prefoldin PF02996.17 gi|347523874|ref|YP_004781444.1| - 0.24 11.3 9.8 6.5 6.7 0.7 3.6 2 1 1 3 3 3 0 Prefoldin subunit PEARLI-4 PF05278.12 gi|347523874|ref|YP_004781444.1| - 0.25 10.9 11.3 0.57 9.7 0.2 2.3 1 1 1 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) GIT_CC PF16559.5 gi|347523874|ref|YP_004781444.1| - 0.26 11.2 1.5 1.5 8.7 0.1 2.6 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Fmp27_WPPW PF10359.9 gi|347523874|ref|YP_004781444.1| - 0.27 10.1 5.9 3.5 6.4 1.7 2.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain SKA2 PF16740.5 gi|347523874|ref|YP_004781444.1| - 0.27 11.0 11.1 1.6 8.5 1.4 3.8 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 FPP PF05911.11 gi|347523874|ref|YP_004781444.1| - 0.27 9.4 13.4 0.16 10.1 4.9 1.9 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil DASH_Dad1 PF08649.10 gi|347523874|ref|YP_004781444.1| - 0.3 11.3 1.5 1.1 9.5 0.1 2.6 3 0 0 3 3 1 0 DASH complex subunit Dad1 DUF4988 PF16378.5 gi|347523874|ref|YP_004781444.1| - 0.33 10.6 6.3 12 5.5 0.1 3.3 2 1 1 3 3 3 0 Domain of unknown function FliJ PF02050.16 gi|347523874|ref|YP_004781444.1| - 0.35 11.1 1.3 5.5 7.2 0.3 2.4 1 1 1 2 2 2 0 Flagellar FliJ protein Mod_r PF07200.13 gi|347523874|ref|YP_004781444.1| - 0.36 10.9 9.1 5.2 7.2 4.0 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Lebercilin PF15619.6 gi|347523874|ref|YP_004781444.1| - 0.37 10.4 9.6 1.1 8.8 9.6 1.8 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Cast PF10174.9 gi|347523874|ref|YP_004781444.1| - 0.39 8.9 9.7 0.59 8.3 9.7 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DivIC PF04977.15 gi|347523874|ref|YP_004781444.1| - 0.41 10.4 12.3 0.23 11.2 0.3 3.9 1 1 2 4 4 3 0 Septum formation initiator Pil1 PF13805.6 gi|347523874|ref|YP_004781444.1| - 0.43 10.0 5.9 0.18 11.3 0.7 2.1 1 1 1 2 2 2 0 Eisosome component PIL1 GrpE PF01025.19 gi|347523874|ref|YP_004781444.1| - 0.45 10.2 8.8 9.5 5.8 8.7 2.6 1 1 0 1 1 1 0 GrpE Focal_AT PF03623.13 gi|347523874|ref|YP_004781444.1| - 0.47 10.4 7.7 0.58 10.2 6.0 2.0 1 1 0 1 1 1 0 Focal adhesion targeting region CENP-K PF11802.8 gi|347523874|ref|YP_004781444.1| - 0.48 10.0 10.1 0.78 9.3 9.5 1.6 1 1 0 1 1 1 0 Centromere-associated protein K CLZ PF16526.5 gi|347523874|ref|YP_004781444.1| - 0.48 10.8 16.1 0.59 10.5 2.9 4.1 2 1 2 4 4 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FlxA PF14282.6 gi|347523874|ref|YP_004781444.1| - 0.5 10.4 7.1 2.4 8.2 0.9 3.3 1 1 2 4 4 4 0 FlxA-like protein TelA PF05816.11 gi|347523874|ref|YP_004781444.1| - 0.51 9.3 10.1 2.3 7.2 1.6 2.5 1 1 2 3 3 3 0 Toxic anion resistance protein (TelA) DUF2703 PF10865.8 gi|347523874|ref|YP_004781444.1| - 0.58 10.4 2.5 6 7.1 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2703) LXG PF04740.12 gi|347523874|ref|YP_004781444.1| - 0.58 9.8 5.5 9.8 5.8 0.1 2.6 1 1 1 2 2 2 0 LXG domain of WXG superfamily DHR10 PF18595.1 gi|347523874|ref|YP_004781444.1| - 0.6 10.2 18.1 0.062 13.3 6.0 2.8 2 1 1 3 3 2 0 Designed helical repeat protein 10 domain TSC22 PF01166.18 gi|347523874|ref|YP_004781444.1| - 0.6 10.5 7.0 1.9 8.9 0.0 4.3 3 2 1 4 4 2 0 TSC-22/dip/bun family FliD_N PF02465.18 gi|347523874|ref|YP_004781444.1| - 0.62 10.8 9.3 2.8 8.7 3.1 2.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus SOGA PF11365.8 gi|347523874|ref|YP_004781444.1| - 0.63 11.2 8.9 8.7 7.6 0.7 2.6 2 0 0 2 2 2 0 Protein SOGA DUF883 PF05957.13 gi|347523874|ref|YP_004781444.1| - 0.63 10.7 7.6 0.21 12.2 2.3 2.7 1 1 2 3 3 1 0 Bacterial protein of unknown function (DUF883) Spc42p PF11544.8 gi|347523874|ref|YP_004781444.1| - 0.63 10.1 4.9 5.5 7.1 2.0 2.8 2 0 0 2 2 2 0 Spindle pole body component Spc42p AKNA PF12443.8 gi|347523874|ref|YP_004781444.1| - 0.64 10.7 2.9 2 9.1 0.2 2.5 1 1 0 2 2 2 0 AT-hook-containing transcription factor Fzo_mitofusin PF04799.13 gi|347523874|ref|YP_004781444.1| - 0.67 9.5 7.1 1.3 8.5 0.2 2.6 2 1 1 3 3 3 0 fzo-like conserved region TF_AP-2 PF03299.14 gi|347523874|ref|YP_004781444.1| - 0.68 9.9 3.3 1.3 8.9 3.3 1.4 1 0 0 1 1 1 0 Transcription factor AP-2 ERM PF00769.19 gi|347523874|ref|YP_004781444.1| - 0.68 9.7 8.2 0.36 10.6 5.6 1.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF2205 PF10224.9 gi|347523874|ref|YP_004781444.1| - 0.71 9.9 6.3 14 5.8 0.2 2.6 2 0 0 2 2 2 0 Short coiled-coil protein DUF4686 PF15742.5 gi|347523874|ref|YP_004781444.1| - 0.74 8.9 8.1 2.2 7.3 8.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4686) Mis14 PF08641.12 gi|347523874|ref|YP_004781444.1| - 0.76 10.1 8.3 12 6.2 8.3 2.5 1 1 0 1 1 1 0 Kinetochore protein Mis14 like DASH_Spc34 PF08657.10 gi|347523874|ref|YP_004781444.1| - 0.81 9.4 3.4 4 7.1 0.8 2.2 1 1 0 1 1 1 0 DASH complex subunit Spc34 Syntaxin PF00804.25 gi|347523874|ref|YP_004781444.1| - 0.82 9.3 10.0 1.5 8.4 1.5 2.3 1 1 1 2 2 2 0 Syntaxin Tweety PF04906.13 gi|347523874|ref|YP_004781444.1| - 0.82 8.3 7.0 5.8 5.5 2.2 2.4 1 1 1 2 2 2 0 Tweety Phage_GPO PF05929.11 gi|347523874|ref|YP_004781444.1| - 0.94 9.0 8.3 1.6 8.3 2.1 2.3 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF2968 PF11180.8 gi|347523874|ref|YP_004781444.1| - 0.97 9.0 2.9 0.73 9.4 0.8 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF2968) YkyA PF10368.9 gi|347523874|ref|YP_004781444.1| - 0.99 9.1 11.2 2.8 7.6 10.6 1.8 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Not3 PF04065.15 gi|347523874|ref|YP_004781444.1| - 1.1 8.7 8.3 11 5.3 8.3 2.2 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component HAUS-augmin3 PF14932.6 gi|347523874|ref|YP_004781444.1| - 1.1 8.8 11.1 0.8 9.2 5.6 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Med9 PF07544.13 gi|347523874|ref|YP_004781444.1| - 1.2 9.3 5.0 2.1 8.5 0.3 2.7 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 TBK1_CCD1 PF18394.1 gi|347523874|ref|YP_004781444.1| - 1.2 8.6 9.9 5.1 6.6 4.3 2.6 2 1 1 3 3 2 0 TANK-binding kinase 1 coiled-coil domain 1 CREPT PF16566.5 gi|347523874|ref|YP_004781444.1| - 1.2 9.3 7.7 4.4 7.5 1.3 2.4 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour 5_nucleotid PF05761.14 gi|347523874|ref|YP_004781444.1| - 1.2 7.9 6.9 3.8 6.3 0.3 2.3 1 1 1 2 2 2 0 5' nucleotidase family KASH_CCD PF14662.6 gi|347523874|ref|YP_004781444.1| - 1.3 8.8 12.5 6 6.7 12.7 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Rab5-bind PF09311.11 gi|347523874|ref|YP_004781444.1| - 1.4 8.2 8.7 0.62 9.4 4.1 1.8 1 1 0 1 1 1 0 Rabaptin-like protein zinc_ribbon_15 PF17032.5 gi|347523874|ref|YP_004781444.1| - 1.6 9.5 6.8 6.6 7.6 0.2 4.1 4 0 0 4 4 2 0 zinc-ribbon family DASH_Spc19 PF08287.11 gi|347523874|ref|YP_004781444.1| - 1.6 8.6 7.9 3.5 7.5 5.8 2.2 1 1 1 2 2 2 0 Spc19 DUF4404 PF14357.6 gi|347523874|ref|YP_004781444.1| - 1.7 9.3 8.2 0.52 11.0 1.9 2.8 2 1 1 3 3 2 0 Domain of unknown function (DUF4404) Uso1_p115_C PF04871.13 gi|347523874|ref|YP_004781444.1| - 1.7 9.0 18.4 0.44 10.9 13.8 2.2 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region HalX PF08663.10 gi|347523874|ref|YP_004781444.1| - 1.8 8.9 11.8 13 6.2 0.5 4.3 2 1 2 4 4 3 0 HalX domain DUF4472 PF14739.6 gi|347523874|ref|YP_004781444.1| - 1.9 9.3 8.0 2.1 9.1 2.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) DUF4200 PF13863.6 gi|347523874|ref|YP_004781444.1| - 1.9 8.9 13.0 7.7 6.9 1.1 3.0 1 1 2 3 3 2 0 Domain of unknown function (DUF4200) DUF1319 PF07028.11 gi|347523874|ref|YP_004781444.1| - 2.1 8.6 7.5 1.4 9.1 4.0 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) Wtap PF17098.5 gi|347523874|ref|YP_004781444.1| - 2.2 8.2 10.8 1.1 9.2 7.2 2.1 1 1 1 2 2 1 0 WTAP/Mum2p family CdvA PF18822.1 gi|347523874|ref|YP_004781444.1| - 2.2 8.1 13.5 14 5.5 1.9 3.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain AAA_23 PF13476.6 gi|347523874|ref|YP_004781444.1| - 2.3 8.7 4.3 13 6.2 4.2 2.1 1 1 0 1 1 1 0 AAA domain PCRF PF03462.18 gi|347523874|ref|YP_004781444.1| - 2.4 8.0 11.5 3.2 7.6 3.0 2.5 1 1 1 2 2 2 0 PCRF domain FAM76 PF16046.5 gi|347523874|ref|YP_004781444.1| - 2.4 7.4 10.3 0.35 10.2 2.9 2.7 1 1 1 2 2 2 0 FAM76 protein DUF773 PF05600.12 gi|347523874|ref|YP_004781444.1| - 2.5 6.7 8.7 1.2 7.8 1.4 2.3 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 DUF4337 PF14235.6 gi|347523874|ref|YP_004781444.1| - 2.5 8.2 8.3 8.4e+02 -0.0 8.3 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) YscO PF07321.12 gi|347523874|ref|YP_004781444.1| - 2.6 8.0 8.8 2.5 8.0 4.7 2.5 1 1 0 1 1 1 0 Type III secretion protein YscO Tektin PF03148.14 gi|347523874|ref|YP_004781444.1| - 2.7 6.7 7.5 2.1 7.0 0.9 2.1 1 1 0 1 1 1 0 Tektin family CENP-H PF05837.12 gi|347523874|ref|YP_004781444.1| - 3.4 8.1 14.7 1.2 9.6 3.3 2.7 2 1 1 3 3 2 0 Centromere protein H (CENP-H) Sigma70_ner PF04546.13 gi|347523874|ref|YP_004781444.1| - 3.6 7.4 8.9 1.1 9.1 5.0 2.1 2 1 0 2 2 1 0 Sigma-70, non-essential region Nsp1_C PF05064.13 gi|347523874|ref|YP_004781444.1| - 3.8 7.4 6.4 9.3 6.1 0.3 2.7 1 1 1 2 2 2 0 Nsp1-like C-terminal region DUF641 PF04859.12 gi|347523874|ref|YP_004781444.1| - 3.9 7.8 12.0 0.59 10.5 1.4 2.9 2 1 1 3 3 2 0 Plant protein of unknown function (DUF641) DUF2024 PF09630.10 gi|347523874|ref|YP_004781444.1| - 4.3 7.3 5.8 21 5.1 0.6 4.1 4 1 0 4 4 3 0 Domain of unknown function (DUF2024) Lge1 PF11488.8 gi|347523874|ref|YP_004781444.1| - 5.2 7.3 10.1 1.8 8.8 1.9 3.0 2 1 1 3 3 2 0 Transcriptional regulatory protein LGE1 LUC7 PF03194.15 gi|347523874|ref|YP_004781444.1| - 5.4 6.6 9.3 24 4.5 8.3 2.4 1 1 1 2 2 2 0 LUC7 N_terminus FmiP_Thoc5 PF09766.9 gi|347523874|ref|YP_004781444.1| - 6.1 6.0 7.6 18 4.4 1.2 2.2 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 BRE1 PF08647.11 gi|347523874|ref|YP_004781444.1| - 6.2 7.0 16.4 0.028 14.5 5.2 2.8 3 1 0 3 3 1 0 BRE1 E3 ubiquitin ligase JIP_LZII PF16471.5 gi|347523874|ref|YP_004781444.1| - 6.3 7.0 17.9 1.2 9.4 1.2 4.0 2 1 2 4 4 3 0 JNK-interacting protein leucine zipper II CHD5 PF04420.14 gi|347523874|ref|YP_004781444.1| - 6.4 6.6 6.0 11 5.9 0.4 2.5 1 1 1 2 2 2 0 CHD5-like protein RPW8 PF05659.11 gi|347523874|ref|YP_004781444.1| - 6.6 6.4 9.3 1 9.1 3.0 2.7 2 1 1 3 3 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Cortex-I_coil PF09304.10 gi|347523874|ref|YP_004781444.1| - 6.8 7.0 10.5 2 8.6 3.5 2.4 1 1 2 3 3 3 0 Cortexillin I, coiled coil H-kinase_dim PF02895.14 gi|347523874|ref|YP_004781444.1| - 6.9 7.1 7.1 17 5.9 1.6 2.9 1 1 1 2 2 2 0 Signal transducing histidine kinase, homodimeric domain Cauli_DNA-bind PF03310.13 gi|347523874|ref|YP_004781444.1| - 7.1 6.7 8.3 6 7.0 2.4 3.0 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein DUF4407 PF14362.6 gi|347523874|ref|YP_004781444.1| - 7.2 5.9 12.5 0.015 14.7 2.5 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4407) Cluap1 PF10234.9 gi|347523874|ref|YP_004781444.1| - 7.2 5.9 9.1 6.6 6.0 1.1 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 Wbp11 PF09429.10 gi|347523874|ref|YP_004781444.1| - 7.6 7.0 7.1 4.1 7.9 0.5 3.0 1 1 2 3 3 2 0 WW domain binding protein 11 Lectin_N PF03954.14 gi|347523874|ref|YP_004781444.1| - 7.7 6.3 13.6 0.37 10.5 1.3 2.9 3 1 0 3 3 2 0 Hepatic lectin, N-terminal domain Ax_dynein_light PF10211.9 gi|347523874|ref|YP_004781444.1| - 7.9 6.4 9.4 8 6.4 1.8 2.6 1 1 1 2 2 2 0 Axonemal dynein light chain CCCAP PF15964.5 gi|347523874|ref|YP_004781444.1| - 8.7 4.5 12.0 2.9 6.1 5.3 2.1 1 1 1 2 2 2 0 Centrosomal colon cancer autoantigen protein family Uds1 PF15456.6 gi|347523874|ref|YP_004781444.1| - 9 6.5 9.6 66 3.7 0.6 2.6 1 1 1 2 2 2 0 Up-regulated During Septation TMCO5 PF14992.6 gi|347523874|ref|YP_004781444.1| - 9.1 5.8 12.3 31 4.0 12.3 1.8 1 1 0 1 1 1 0 TMCO5 family EFhand_Ca_insen PF08726.10 gi|347523875|ref|YP_004781445.1| - 0.056 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Ca2+ insensitive EF hand HTH_10 PF04967.12 gi|347523876|ref|YP_004781446.1| - 5e-18 64.6 0.4 9.7e-18 63.7 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.6 gi|347523876|ref|YP_004781446.1| - 0.00055 19.4 0.0 0.0014 18.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|347523876|ref|YP_004781446.1| - 0.0072 16.4 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix PCI PF01399.27 gi|347523876|ref|YP_004781446.1| - 0.0098 16.4 0.1 0.019 15.5 0.1 1.5 1 0 0 1 1 1 1 PCI domain MarR_2 PF12802.7 gi|347523876|ref|YP_004781446.1| - 0.021 14.7 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|347523876|ref|YP_004781446.1| - 0.029 14.3 0.6 0.74 9.8 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|347523876|ref|YP_004781446.1| - 0.04 14.1 0.8 0.51 10.6 0.1 2.6 2 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_AraC PF00165.23 gi|347523876|ref|YP_004781446.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_50 PF18024.1 gi|347523876|ref|YP_004781446.1| - 0.06 13.0 0.3 0.38 10.4 0.2 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.15 gi|347523876|ref|YP_004781446.1| - 0.12 12.2 0.4 0.4 10.5 0.4 2.0 1 1 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region PT-VENN PF04829.13 gi|347523877|ref|YP_004781447.1| - 0.19 11.9 1.9 0.41 10.7 0.1 2.5 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif DUF3327 PF11806.8 gi|347523877|ref|YP_004781447.1| - 0.19 12.4 0.0 0.31 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3327) Rubrerythrin PF02915.17 gi|347523878|ref|YP_004781448.1| - 1.9e-10 41.2 0.8 2.6e-10 40.8 0.8 1.2 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.10 gi|347523878|ref|YP_004781448.1| - 0.0014 19.0 0.3 0.0018 18.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Peptidase_S8_N PF16361.5 gi|347523878|ref|YP_004781448.1| - 0.011 16.2 0.2 0.013 15.9 0.2 1.1 1 0 0 1 1 1 0 N-terminal of Subtilase family Ferritin PF00210.24 gi|347523878|ref|YP_004781448.1| - 0.018 15.0 0.7 0.024 14.6 0.7 1.3 1 0 0 1 1 1 0 Ferritin-like domain DUF2202 PF09968.9 gi|347523878|ref|YP_004781448.1| - 0.032 14.1 0.2 0.041 13.7 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized protein domain (DUF2202) Multi-haem_cyto PF13447.6 gi|347523879|ref|YP_004781449.1| - 7.8e-17 61.4 12.6 1.2e-12 47.6 0.5 4.0 3 1 0 3 3 3 2 Seven times multi-haem cytochrome CxxCH Cytochrome_C554 PF13435.6 gi|347523879|ref|YP_004781449.1| - 1.5e-12 48.2 7.9 0.035 15.0 0.0 5.4 5 1 0 5 5 5 3 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.6 gi|347523879|ref|YP_004781449.1| - 2.1e-12 46.9 7.2 0.02 14.9 3.7 5.4 2 1 2 4 4 4 4 Cytochrome c7 and related cytochrome c Cytochrom_c3_2 PF14537.6 gi|347523879|ref|YP_004781449.1| - 4.9e-07 30.1 13.1 0.00094 19.6 0.5 5.2 4 2 1 5 5 5 1 Cytochrome c3 Paired_CXXCH_1 PF09699.10 gi|347523879|ref|YP_004781449.1| - 7.8e-05 22.3 24.6 0.018 14.8 1.8 6.8 6 1 0 6 6 6 1 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.16 gi|347523879|ref|YP_004781449.1| - 0.00083 19.7 19.4 0.25 11.7 0.3 5.3 3 2 3 6 6 6 2 Class III cytochrome C family zf-C2H2_3 PF13878.6 gi|347523879|ref|YP_004781449.1| - 0.0015 18.3 1.9 0.13 12.1 0.0 4.0 4 0 0 4 4 4 1 zinc-finger of acetyl-transferase ESCO Cytochrom_C552 PF02335.15 gi|347523879|ref|YP_004781449.1| - 0.0049 15.9 15.2 0.031 13.2 1.0 4.9 4 1 1 5 5 5 1 Cytochrome c552 zinc_ribbon_16 PF17034.5 gi|347523879|ref|YP_004781449.1| - 0.019 15.2 1.5 32 4.8 0.0 3.5 3 0 0 3 3 3 0 Zinc-ribbon like family Cytochrom_C PF00034.21 gi|347523879|ref|YP_004781449.1| - 1.9 9.7 25.6 5.4 8.2 0.2 7.3 6 1 1 7 7 6 0 Cytochrome c Haem_bd PF14376.6 gi|347523879|ref|YP_004781449.1| - 4 7.4 14.8 19 5.2 0.0 5.0 4 1 0 5 5 5 0 Haem-binding domain HNH PF01844.23 gi|347523879|ref|YP_004781449.1| - 5.2 7.3 0.0 5.2 7.3 0.0 5.2 7 0 0 7 7 7 0 HNH endonuclease Cytochrome_CBB3 PF13442.6 gi|347523879|ref|YP_004781449.1| - 6.5 7.2 27.6 14 6.1 0.6 7.9 4 2 4 8 8 8 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrome_P460 PF16694.5 gi|347523879|ref|YP_004781449.1| - 8.4 6.8 0.0 8.4 6.8 0.0 6.0 7 1 1 8 8 7 0 Cytochrome P460 Peptidase_M48 PF01435.18 gi|347523880|ref|YP_004781450.1| - 2.7e-40 138.2 0.4 4.9e-40 137.4 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M48 LtrA PF06772.11 gi|347523880|ref|YP_004781450.1| - 0.002 17.4 14.3 0.03 13.5 3.4 2.3 2 0 0 2 2 2 2 Bacterial low temperature requirement A protein (LtrA) Peptidase_M56 PF05569.11 gi|347523880|ref|YP_004781450.1| - 0.012 14.9 0.0 0.018 14.2 0.0 1.5 1 0 0 1 1 1 0 BlaR1 peptidase M56 PaREP1 PF05942.11 gi|347523881|ref|YP_004781451.1| - 2.1e-31 108.3 1.3 2.1e-31 108.3 1.3 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family BtpA PF03437.15 gi|347523882|ref|YP_004781452.1| - 1.9e-86 289.7 0.0 2.1e-86 289.5 0.0 1.0 1 0 0 1 1 1 1 BtpA family CobS PF02654.15 gi|347523883|ref|YP_004781453.1| - 2.4e-34 119.3 17.3 2.8e-34 119.1 17.3 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF4239 PF14023.6 gi|347523883|ref|YP_004781453.1| - 0.019 14.7 0.3 0.046 13.4 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) Aminotran_1_2 PF00155.21 gi|347523885|ref|YP_004781455.1| - 4.6e-36 124.7 0.0 5.2e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II NTP_transf_3 PF12804.7 gi|347523886|ref|YP_004781456.1| - 1.5e-18 67.7 0.2 1.7e-18 67.5 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|347523886|ref|YP_004781456.1| - 2.4e-05 24.1 0.0 3.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|347523886|ref|YP_004781456.1| - 6.9e-05 22.7 0.0 9.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CbiZ PF01955.18 gi|347523887|ref|YP_004781457.1| - 6.7e-34 117.7 0.2 1e-33 117.1 0.2 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DBI_PRT PF02277.17 gi|347523888|ref|YP_004781458.1| - 7.9e-10 38.5 0.7 1.2e-09 37.9 0.7 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase CobD_Cbib PF03186.13 gi|347523889|ref|YP_004781459.1| - 3.2e-77 259.4 3.3 3.9e-77 259.2 3.3 1.1 1 0 0 1 1 1 1 CobD/Cbib protein FA_desaturase PF00487.24 gi|347523889|ref|YP_004781459.1| - 5.5 6.8 15.1 0.27 11.0 8.6 1.9 2 0 0 2 2 2 0 Fatty acid desaturase TrmK PF04816.12 gi|347523890|ref|YP_004781460.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase AsnC_trans_reg2 PF17805.1 gi|347523891|ref|YP_004781461.1| - 1.7e-26 92.2 0.0 1.9e-15 56.8 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|347523891|ref|YP_004781461.1| - 0.013 15.3 6.2 0.024 14.5 0.1 3.8 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|347523891|ref|YP_004781461.1| - 0.075 12.7 0.1 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Radical_SAM PF04055.21 gi|347523892|ref|YP_004781462.1| - 7.2e-23 81.8 0.0 1.6e-22 80.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347523892|ref|YP_004781462.1| - 6e-08 33.1 0.0 1.2e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|347523892|ref|YP_004781462.1| - 2.5e-06 27.9 0.1 6e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|347523892|ref|YP_004781462.1| - 7.3e-05 22.9 0.0 0.00014 22.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain NAD_binding_4 PF07993.12 gi|347523892|ref|YP_004781462.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein GlutR_N PF05201.15 gi|347523893|ref|YP_004781463.1| - 1.7e-34 118.7 0.0 4.6e-34 117.3 0.0 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|347523893|ref|YP_004781463.1| - 1.8e-18 66.9 0.0 3.7e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|347523893|ref|YP_004781463.1| - 2.4e-12 47.1 3.0 5.7e-12 45.9 3.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|347523893|ref|YP_004781463.1| - 1.3e-09 38.5 1.1 3.4e-09 37.1 1.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|347523893|ref|YP_004781463.1| - 0.0003 20.2 0.0 0.00062 19.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|347523893|ref|YP_004781463.1| - 0.0016 18.7 0.2 0.0035 17.6 0.1 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|347523893|ref|YP_004781463.1| - 0.002 18.3 0.0 0.0055 16.9 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|347523893|ref|YP_004781463.1| - 0.053 14.4 0.1 5.7 7.8 0.1 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|347523893|ref|YP_004781463.1| - 0.06 13.2 3.1 0.068 13.1 0.1 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NleF_casp_inhib PF16809.5 gi|347523893|ref|YP_004781463.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 NleF caspase inhibitor GIDA PF01134.22 gi|347523893|ref|YP_004781463.1| - 0.19 10.8 2.6 0.23 10.5 1.0 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|347523894|ref|YP_004781464.1| - 5.4e-23 81.4 0.6 1.3e-22 80.2 0.3 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|347523894|ref|YP_004781464.1| - 3.5e-05 24.0 1.5 7.6e-05 22.9 1.5 1.7 1 0 0 1 1 1 1 TrkA-N domain Rossmann-like PF10727.9 gi|347523894|ref|YP_004781464.1| - 0.00036 20.4 0.9 0.00071 19.4 0.6 1.6 1 1 0 1 1 1 1 Rossmann-like domain F420_oxidored PF03807.17 gi|347523894|ref|YP_004781464.1| - 0.0014 19.2 0.2 0.003 18.1 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|347523894|ref|YP_004781464.1| - 0.0024 17.5 0.1 0.0055 16.3 0.1 1.7 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CysG_dimeriser PF10414.9 gi|347523894|ref|YP_004781464.1| - 0.0026 17.4 0.1 2.4 7.9 0.0 2.6 2 0 0 2 2 2 2 Sirohaem synthase dimerisation region Pyr_redox PF00070.27 gi|347523894|ref|YP_004781464.1| - 0.0075 16.8 0.7 0.024 15.2 0.1 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|347523894|ref|YP_004781464.1| - 0.014 15.4 0.2 0.086 12.8 0.2 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus THF_DHG_CYH_C PF02882.19 gi|347523894|ref|YP_004781464.1| - 0.016 14.6 0.3 0.025 13.9 0.3 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|347523894|ref|YP_004781464.1| - 0.025 14.0 0.1 0.065 12.6 0.1 1.7 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|347523894|ref|YP_004781464.1| - 0.043 13.1 0.1 0.084 12.2 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.22 gi|347523894|ref|YP_004781464.1| - 0.044 14.6 0.5 0.12 13.2 0.1 1.9 2 1 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold PDH PF02153.17 gi|347523894|ref|YP_004781464.1| - 0.061 12.3 0.2 0.076 12.0 0.2 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase FAD_binding_2 PF00890.24 gi|347523894|ref|YP_004781464.1| - 0.074 12.1 1.6 0.045 12.8 0.2 1.4 2 0 0 2 2 2 0 FAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|347523894|ref|YP_004781464.1| - 0.083 13.3 0.1 0.2 12.1 0.1 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF3573 PF12097.8 gi|347523894|ref|YP_004781464.1| - 0.087 11.6 0.1 0.17 10.7 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3573) Nre_N PF04894.12 gi|347523895|ref|YP_004781465.1| - 2.4e-90 303.1 0.0 3.3e-90 302.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|347523895|ref|YP_004781465.1| - 9.1e-28 96.4 0.1 1.4e-27 95.8 0.1 1.2 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Thiolase_N PF00108.23 gi|347523896|ref|YP_004781466.1| - 2.8e-84 282.5 0.0 4e-84 282.0 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|347523896|ref|YP_004781466.1| - 1e-39 135.0 0.0 2.2e-38 130.6 0.0 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|347523896|ref|YP_004781466.1| - 3.9e-06 26.6 0.4 3.4e-05 23.6 0.1 2.3 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|347523896|ref|YP_004781466.1| - 0.0015 18.3 0.1 0.082 12.8 0.0 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|347523896|ref|YP_004781466.1| - 0.0058 16.6 0.3 2.2 8.3 0.0 3.1 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain AIRC PF00731.20 gi|347523898|ref|YP_004781468.1| - 2.4e-48 163.5 0.0 2.8e-48 163.3 0.0 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|347523898|ref|YP_004781468.1| - 0.003 17.3 0.0 0.0037 17.0 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DUF166 PF02593.14 gi|347523898|ref|YP_004781468.1| - 0.08 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function AIRS_C PF02769.22 gi|347523899|ref|YP_004781469.1| - 2.5e-18 66.7 0.0 3.6e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|347523899|ref|YP_004781469.1| - 3.9e-12 46.6 0.8 8.8e-12 45.5 0.8 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain tRNA-synt_1d PF00750.19 gi|347523900|ref|YP_004781470.1| - 1.9e-34 119.2 0.4 1.6e-31 109.5 0.4 2.4 1 1 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|347523900|ref|YP_004781470.1| - 5.3e-26 91.1 2.9 6e-26 91.0 0.0 2.5 3 0 0 3 3 3 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|347523900|ref|YP_004781470.1| - 9.9e-09 35.7 0.0 4.3e-08 33.6 0.0 2.1 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain Bclx_interact PF08945.10 gi|347523900|ref|YP_004781470.1| - 0.024 14.4 0.0 0.073 12.9 0.0 1.8 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain PRP9_N PF16958.5 gi|347523900|ref|YP_004781470.1| - 0.036 14.1 1.1 0.074 13.1 0.3 1.9 2 0 0 2 2 2 0 Pre-mRNA-splicing factor PRP9 N-terminus OmpH PF03938.14 gi|347523900|ref|YP_004781470.1| - 0.1 12.9 1.9 0.25 11.7 1.9 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) tRNA-synt_1e PF01406.19 gi|347523900|ref|YP_004781470.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|347523900|ref|YP_004781470.1| - 0.13 11.1 0.1 0.36 9.7 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF1090 PF06476.12 gi|347523900|ref|YP_004781470.1| - 0.75 9.9 8.1 0.14 12.2 3.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1090) HSCB_C PF07743.13 gi|347523900|ref|YP_004781470.1| - 9.9 6.7 11.1 2.4 8.7 4.9 3.0 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain MgtE PF01769.16 gi|347523901|ref|YP_004781471.1| - 5.3e-30 104.3 23.7 9.2e-18 64.8 5.4 2.9 2 1 1 3 3 3 2 Divalent cation transporter ATP-synt_ab PF00006.25 gi|347523903|ref|YP_004781473.1| - 2e-69 233.5 0.0 2.7e-69 233.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|347523903|ref|YP_004781473.1| - 1.9e-10 41.1 1.2 6.1e-10 39.5 1.2 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|347523903|ref|YP_004781473.1| - 0.02 15.1 1.0 0.069 13.3 0.8 2.1 2 0 0 2 2 2 0 HAS barrel domain Glyco_tranf_2_3 PF13641.6 gi|347523905|ref|YP_004781475.1| - 4.9e-20 72.4 0.0 7.4e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|347523905|ref|YP_004781475.1| - 5.1e-14 52.6 6.7 1.4e-13 51.2 6.7 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|347523905|ref|YP_004781475.1| - 1.1e-09 38.3 0.0 1.6e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 UPF0093 PF03653.13 gi|347523905|ref|YP_004781475.1| - 0.14 12.4 0.1 0.3 11.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0093) ApbA_C PF08546.11 gi|347523906|ref|YP_004781476.1| - 1.1e-38 132.2 0.0 2.6e-38 131.0 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|347523906|ref|YP_004781476.1| - 1.5e-30 105.9 0.1 2.1e-30 105.4 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|347523906|ref|YP_004781476.1| - 0.0016 18.1 1.6 0.0021 17.7 0.4 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|347523906|ref|YP_004781476.1| - 0.0019 17.5 0.1 0.0028 17.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|347523906|ref|YP_004781476.1| - 0.0029 17.6 0.0 0.0055 16.7 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|347523906|ref|YP_004781476.1| - 0.0031 18.1 0.5 0.014 15.9 0.5 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|347523906|ref|YP_004781476.1| - 0.0083 16.0 0.2 0.015 15.2 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|347523906|ref|YP_004781476.1| - 0.017 15.2 0.1 0.044 13.9 0.1 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|347523906|ref|YP_004781476.1| - 0.029 13.9 0.0 0.052 13.1 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|347523906|ref|YP_004781476.1| - 0.038 13.5 0.0 0.085 12.4 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain HI0933_like PF03486.14 gi|347523906|ref|YP_004781476.1| - 0.039 12.7 0.2 0.054 12.2 0.2 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_8 PF13450.6 gi|347523906|ref|YP_004781476.1| - 0.045 14.0 1.6 0.078 13.2 0.9 1.8 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 gi|347523906|ref|YP_004781476.1| - 0.072 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4010 PF13194.6 gi|347523908|ref|YP_004781478.1| - 1.1e-16 61.1 39.8 5.4e-16 58.9 22.0 3.3 2 2 2 4 4 4 2 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|347523908|ref|YP_004781478.1| - 3.3e-14 53.3 9.4 3.3e-14 53.3 9.4 3.0 3 1 1 4 4 4 1 MgtC family MFS_1 PF07690.16 gi|347523909|ref|YP_004781479.1| - 1.2 7.9 52.5 1.9 7.3 0.8 3.0 1 1 0 2 2 2 0 Major Facilitator Superfamily DUF2651 PF10852.8 gi|347523909|ref|YP_004781479.1| - 5.3 7.7 8.1 0.72 10.5 2.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2651) AdoMet_dc PF02675.15 gi|347523910|ref|YP_004781480.1| - 1.1e-36 125.3 0.0 1.3e-36 125.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase NMD3 PF04981.13 gi|347523911|ref|YP_004781481.1| - 1.4e-45 155.6 0.0 1.6e-45 155.5 0.0 1.0 1 0 0 1 1 1 1 NMD3 family AceK PF06315.11 gi|347523911|ref|YP_004781481.1| - 0.0031 16.1 0.0 0.0041 15.7 0.0 1.1 1 0 0 1 1 1 1 Isocitrate dehydrogenase kinase/phosphatase (AceK) zf-XS PF03470.14 gi|347523911|ref|YP_004781481.1| - 0.017 15.4 0.1 0.041 14.2 0.1 1.6 2 0 0 2 2 2 0 XS zinc finger domain DZR PF12773.7 gi|347523911|ref|YP_004781481.1| - 0.46 10.6 4.7 68 3.6 3.6 3.0 2 1 0 2 2 2 0 Double zinc ribbon Thioredoxin PF00085.20 gi|347523912|ref|YP_004781482.1| - 1.4e-10 41.1 0.0 1.6e-10 40.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|347523912|ref|YP_004781482.1| - 9.2e-07 29.3 0.1 4.8e-06 27.0 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|347523912|ref|YP_004781482.1| - 8.6e-05 22.5 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|347523912|ref|YP_004781482.1| - 9.7e-05 22.6 0.2 0.014 15.7 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like AhpC-TSA PF00578.21 gi|347523912|ref|YP_004781482.1| - 0.00054 19.9 0.2 0.0094 15.9 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_4 PF13462.6 gi|347523912|ref|YP_004781482.1| - 0.0025 18.0 0.5 2.1 8.5 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin TraF PF13728.6 gi|347523912|ref|YP_004781482.1| - 0.0049 16.7 0.1 0.015 15.2 0.1 1.7 1 1 0 1 1 1 1 F plasmid transfer operon protein DUF2847 PF11009.8 gi|347523912|ref|YP_004781482.1| - 0.014 15.2 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2847) DSBA PF01323.20 gi|347523912|ref|YP_004781482.1| - 0.021 14.6 0.1 0.97 9.2 0.0 2.0 2 0 0 2 2 2 0 DSBA-like thioredoxin domain OST3_OST6 PF04756.13 gi|347523912|ref|YP_004781482.1| - 0.025 14.0 0.0 0.026 13.9 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family TrbC_Ftype PF09673.10 gi|347523912|ref|YP_004781482.1| - 0.028 14.5 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein DUF393 PF04134.12 gi|347523912|ref|YP_004781482.1| - 0.036 15.4 0.0 0.042 15.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF393 HyaE PF07449.11 gi|347523912|ref|YP_004781482.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE SAICAR_synt PF01259.18 gi|347523913|ref|YP_004781483.1| - 1.4e-50 172.3 0.0 1.7e-50 172.0 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.14 gi|347523914|ref|YP_004781484.1| - 2.2e-19 69.4 0.0 2.4e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase PALP PF00291.25 gi|347523916|ref|YP_004781486.1| - 0.00021 20.8 0.1 0.00079 18.9 0.0 1.8 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme MetOD1 PF18546.1 gi|347523918|ref|YP_004781488.1| - 0.065 13.2 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Metanogen output domain 1 ALAD PF00490.21 gi|347523919|ref|YP_004781489.1| - 8.4e-143 475.3 0.0 9.5e-143 475.1 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_3 PF00202.21 gi|347523920|ref|YP_004781490.1| - 3.8e-70 236.6 0.0 4.7e-70 236.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|347523920|ref|YP_004781490.1| - 5.8e-06 25.7 0.0 7.1e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|347523920|ref|YP_004781490.1| - 0.0048 16.2 0.0 0.011 15.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Bclx_interact PF08945.10 gi|347523920|ref|YP_004781490.1| - 0.16 11.8 0.1 0.41 10.5 0.1 1.6 1 0 0 1 1 1 0 Bcl-x interacting, BH3 domain Porphobil_deam PF01379.20 gi|347523921|ref|YP_004781491.1| - 3.7e-65 219.3 0.0 4.7e-65 218.9 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|347523921|ref|YP_004781491.1| - 1.1e-16 61.0 0.1 1.9e-16 60.2 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain TP_methylase PF00590.20 gi|347523922|ref|YP_004781492.1| - 1.3e-52 178.9 3.6 1.5e-52 178.7 3.6 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|347523923|ref|YP_004781493.1| - 3.5e-37 128.0 0.4 4.3e-37 127.7 0.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.17 gi|347523923|ref|YP_004781493.1| - 0.0013 19.0 0.0 0.057 13.8 0.0 2.5 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor GST_N_2 PF13409.6 gi|347523923|ref|YP_004781493.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain adh_short PF00106.25 gi|347523923|ref|YP_004781493.1| - 0.14 11.6 0.0 1.2 8.6 0.0 2.3 3 0 0 3 3 3 0 short chain dehydrogenase DUF2795 PF11387.8 gi|347523924|ref|YP_004781494.1| - 0.14 12.4 0.1 0.31 11.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) CBS PF00571.28 gi|347523925|ref|YP_004781495.1| - 1.2e-40 137.7 5.6 7.6e-20 71.1 0.2 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|347523925|ref|YP_004781495.1| - 0.0029 17.8 0.2 3.2 8.1 0.1 2.7 2 1 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain Acetyltransf_10 PF13673.7 gi|347523925|ref|YP_004781495.1| - 0.011 15.7 0.0 4.4 7.3 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|347523925|ref|YP_004781495.1| - 0.012 15.8 0.0 0.61 10.3 0.0 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) family PRC PF05239.16 gi|347523925|ref|YP_004781495.1| - 0.054 13.6 0.8 3.3 7.8 0.0 2.5 2 0 0 2 2 2 0 PRC-barrel domain Glyco_hydro_38 PF18438.1 gi|347523925|ref|YP_004781495.1| - 0.055 13.5 0.0 12 6.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal domain 1 DUF3659 PF12396.8 gi|347523925|ref|YP_004781495.1| - 0.077 12.9 1.7 4.7 7.2 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) DUF2283 PF10049.9 gi|347523925|ref|YP_004781495.1| - 0.098 12.9 0.2 2.8 8.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) GATase_5 PF13507.6 gi|347523926|ref|YP_004781496.1| - 6.1e-40 137.0 0.0 2.5e-26 92.4 0.0 2.1 1 1 1 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.14 gi|347523926|ref|YP_004781496.1| - 1.6e-07 31.2 0.0 2.2e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|347523926|ref|YP_004781496.1| - 7.4e-07 29.1 0.0 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|347523926|ref|YP_004781496.1| - 9.8e-07 28.7 0.0 3.5e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|347523926|ref|YP_004781496.1| - 7.4e-05 22.7 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|347523926|ref|YP_004781496.1| - 0.011 15.4 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 AIRS_C PF02769.22 gi|347523927|ref|YP_004781497.1| - 2.4e-47 161.0 2.0 8e-27 94.3 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|347523927|ref|YP_004781497.1| - 1.2e-45 154.1 0.8 2.9e-22 79.1 0.0 2.8 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|347523927|ref|YP_004781497.1| - 5.1e-11 42.9 0.1 2e-10 41.0 0.1 2.1 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain HTH_20 PF12840.7 gi|347523927|ref|YP_004781497.1| - 0.072 13.2 0.4 0.24 11.5 0.4 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|347523927|ref|YP_004781497.1| - 0.078 12.9 1.6 1.2 9.0 0.5 2.7 2 0 0 2 2 2 0 MarR family GATase_6 PF13522.6 gi|347523928|ref|YP_004781498.1| - 5.7e-15 55.7 0.3 1.2e-14 54.7 0.2 1.5 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|347523928|ref|YP_004781498.1| - 2.3e-12 46.9 0.0 4.1e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|347523928|ref|YP_004781498.1| - 1.5e-05 24.6 0.0 3.1e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Glyco_trans_4_4 PF13579.6 gi|347523928|ref|YP_004781498.1| - 0.37 11.2 8.4 4 7.9 2.0 2.7 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Peptidase_C15 PF01470.17 gi|347523929|ref|YP_004781499.1| - 6.4e-20 72.2 0.0 1.2e-19 71.2 0.0 1.4 1 1 0 1 1 1 1 Pyroglutamyl peptidase YbjN PF10722.9 gi|347523930|ref|YP_004781500.1| - 0.0043 17.1 0.1 0.0057 16.7 0.1 1.1 1 0 0 1 1 1 1 Putative bacterial sensory transduction regulator DUF5644 PF18712.1 gi|347523930|ref|YP_004781500.1| - 0.09 12.8 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5644) HTH_38 PF13936.6 gi|347523932|ref|YP_004781502.1| - 2.4e-10 40.0 0.4 1.1e-08 34.7 0.5 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|347523932|ref|YP_004781502.1| - 4.7e-10 39.0 0.1 0.0012 18.6 0.0 2.2 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 gi|347523932|ref|YP_004781502.1| - 6.9e-09 35.7 0.8 7.6e-05 22.8 0.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|347523932|ref|YP_004781502.1| - 6.4e-07 29.2 0.2 0.0021 17.9 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|347523932|ref|YP_004781502.1| - 2.9e-05 24.0 1.1 0.011 15.7 0.3 2.5 2 1 0 2 2 2 2 Winged helix-turn helix HTH_7 PF02796.15 gi|347523932|ref|YP_004781502.1| - 6.3e-05 23.0 0.7 0.18 11.9 0.1 2.5 2 1 0 2 2 2 2 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|347523932|ref|YP_004781502.1| - 0.006 16.2 0.4 0.32 10.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|347523932|ref|YP_004781502.1| - 0.0094 15.5 0.0 0.28 10.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_Tnp_IS630 PF01710.16 gi|347523932|ref|YP_004781502.1| - 0.012 15.7 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Transposase Terminase_5 PF06056.12 gi|347523932|ref|YP_004781502.1| - 0.088 12.7 0.1 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_40 PF14493.6 gi|347523932|ref|YP_004781502.1| - 0.1 13.1 0.0 0.73 10.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HlyD_D4 PF16572.5 gi|347523932|ref|YP_004781502.1| - 0.2 11.6 1.1 6.1 6.8 0.1 2.6 2 1 1 3 3 3 0 Long alpha hairpin domain of cation efflux system protein, CusB IGPS PF00218.21 gi|347523933|ref|YP_004781503.1| - 3.2e-36 124.8 0.0 4.1e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PA PF02225.22 gi|347523933|ref|YP_004781503.1| - 0.0027 17.7 0.0 0.13 12.3 0.0 2.2 2 0 0 2 2 2 1 PA domain Oxidored_nitro PF00148.19 gi|347523933|ref|YP_004781503.1| - 0.12 11.1 0.1 0.16 10.7 0.1 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Beta_protein PF14350.6 gi|347523933|ref|YP_004781503.1| - 0.18 11.2 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Beta protein ATPase_2 PF01637.18 gi|347523934|ref|YP_004781504.1| - 5.2e-08 33.1 0.0 2.2e-05 24.5 0.0 2.4 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|347523934|ref|YP_004781504.1| - 1.1e-05 25.9 0.0 2.6e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523934|ref|YP_004781504.1| - 0.0028 17.9 0.0 0.021 15.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|347523934|ref|YP_004781504.1| - 0.025 13.6 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_PrkA PF08298.11 gi|347523934|ref|YP_004781504.1| - 0.033 13.1 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain DUF815 PF05673.13 gi|347523934|ref|YP_004781504.1| - 0.06 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|347523934|ref|YP_004781504.1| - 0.093 11.9 0.0 1.4 8.0 0.0 2.5 2 1 1 3 3 3 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|347523934|ref|YP_004781504.1| - 0.15 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|347523934|ref|YP_004781504.1| - 0.19 11.5 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Adeno_IVa2 PF02456.15 gi|347523934|ref|YP_004781504.1| - 0.21 10.4 0.0 0.54 9.0 0.0 1.6 2 0 0 2 2 2 0 Adenovirus IVa2 protein HypA PF01155.19 gi|347523935|ref|YP_004781505.1| - 6.4e-21 74.5 0.1 7.2e-21 74.3 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|347523935|ref|YP_004781505.1| - 0.00038 20.4 0.4 0.027 14.5 0.1 2.2 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like Trm112p PF03966.16 gi|347523935|ref|YP_004781505.1| - 0.016 15.8 0.0 5.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Trm112p-like protein DUF951 PF06107.11 gi|347523935|ref|YP_004781505.1| - 0.022 14.7 0.0 5.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) UPF0547 PF10571.9 gi|347523935|ref|YP_004781505.1| - 0.026 14.6 4.1 0.32 11.1 0.2 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-CSL PF05207.13 gi|347523935|ref|YP_004781505.1| - 0.027 14.2 0.3 0.05 13.3 0.3 1.4 1 0 0 1 1 1 0 CSL zinc finger DNA_RNApol_7kD PF03604.13 gi|347523935|ref|YP_004781505.1| - 0.03 14.0 0.4 4.2 7.1 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|347523935|ref|YP_004781505.1| - 0.047 13.6 3.6 3.3 7.7 0.4 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|347523935|ref|YP_004781505.1| - 0.08 13.1 1.1 0.54 10.4 1.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF4379 PF14311.6 gi|347523935|ref|YP_004781505.1| - 0.19 12.1 2.7 0.49 10.8 2.7 1.8 1 1 0 1 1 1 0 Probable Zinc-ribbon domain zf-IS66 PF13005.7 gi|347523935|ref|YP_004781505.1| - 0.21 12.0 1.7 8.9 6.8 0.0 3.0 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.18 gi|347523935|ref|YP_004781505.1| - 0.29 11.0 2.5 4.7 7.2 0.6 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HupF_HypC PF01455.18 gi|347523936|ref|YP_004781506.1| - 7.9e-23 80.4 0.3 1e-22 80.0 0.3 1.2 1 0 0 1 1 1 1 HupF/HypC family DUF3006 PF11213.8 gi|347523936|ref|YP_004781506.1| - 0.004 17.4 0.0 0.0053 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) DUF447 PF04289.12 gi|347523936|ref|YP_004781506.1| - 0.036 13.8 0.0 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) AA_kinase PF00696.28 gi|347523937|ref|YP_004781507.1| - 5.6e-27 94.9 0.4 2.4e-25 89.6 0.4 2.0 1 1 0 1 1 1 1 Amino acid kinase family Lys_export PF03956.13 gi|347523939|ref|YP_004781509.1| - 6e-41 140.1 13.1 6e-41 140.1 13.1 2.1 2 0 0 2 2 2 1 Lysine exporter LysO UPF0220 PF05255.11 gi|347523939|ref|YP_004781509.1| - 0.66 9.5 3.7 0.45 10.0 0.4 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0220) CcdA PF07362.12 gi|347523940|ref|YP_004781510.1| - 3.4e-08 33.8 0.6 4.4e-08 33.4 0.6 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.21 gi|347523940|ref|YP_004781510.1| - 0.0017 18.2 4.4 0.0017 18.2 4.4 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|347523940|ref|YP_004781510.1| - 0.014 16.1 5.0 0.019 15.7 5.0 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor Nup84_Nup100 PF04121.13 gi|347523940|ref|YP_004781510.1| - 0.025 12.7 0.7 0.024 12.7 0.7 1.1 1 0 0 1 1 1 0 Nuclear pore protein 84 / 107 ArnB_C PF18677.1 gi|347523940|ref|YP_004781510.1| - 0.059 13.5 3.0 1.5 9.0 1.5 2.0 1 1 1 2 2 2 0 Archaellum regulatory network B, C-terminal domain SinI PF08671.10 gi|347523940|ref|YP_004781510.1| - 0.061 13.1 0.7 0.57 10.0 0.1 2.4 2 0 0 2 2 2 0 Anti-repressor SinI Acetyltransf_11 PF13720.6 gi|347523940|ref|YP_004781510.1| - 0.14 12.6 1.3 0.19 12.2 1.3 1.3 1 1 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PIN PF01850.21 gi|347523941|ref|YP_004781511.1| - 7.7e-07 29.6 0.2 1.6e-06 28.6 0.1 1.5 1 1 1 2 2 2 1 PIN domain DUF4411 PF14367.6 gi|347523941|ref|YP_004781511.1| - 0.17 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) Aldo_ket_red PF00248.21 gi|347523943|ref|YP_004781513.1| - 4.1e-55 187.1 0.0 5.6e-53 180.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family ATP-synt_DE PF00401.20 gi|347523943|ref|YP_004781513.1| - 0.028 14.7 0.1 13 6.2 0.0 2.9 3 0 0 3 3 3 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DUF5518 PF17647.1 gi|347523944|ref|YP_004781514.1| - 0.00017 21.7 22.5 0.00021 21.4 22.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) TMC PF07810.13 gi|347523944|ref|YP_004781514.1| - 0.034 14.7 0.3 0.06 13.9 0.3 1.5 1 0 0 1 1 1 0 TMC domain Trep_Strep PF09605.10 gi|347523944|ref|YP_004781514.1| - 0.038 14.0 11.1 0.044 13.8 11.1 1.0 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) Tic110 PF16940.5 gi|347523944|ref|YP_004781514.1| - 0.11 11.0 2.0 0.12 10.8 2.0 1.0 1 0 0 1 1 1 0 Chloroplast envelope transporter EVC2_like PF12297.8 gi|347523944|ref|YP_004781514.1| - 5.7 5.5 4.0 5.1 5.7 2.8 1.5 1 1 0 1 1 1 0 Ellis van Creveld protein 2 like protein TIP49 PF06068.13 gi|347523945|ref|YP_004781515.1| - 1.3e-143 478.5 0.7 1.8e-143 478.0 0.7 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|347523945|ref|YP_004781515.1| - 2.8e-24 85.0 0.5 3e-23 81.7 0.2 2.9 3 0 0 3 3 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|347523945|ref|YP_004781515.1| - 4.4e-12 46.6 0.7 2.5e-08 34.4 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|347523945|ref|YP_004781515.1| - 6.2e-09 35.8 0.2 3.4e-06 26.9 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|347523945|ref|YP_004781515.1| - 1.8e-07 31.7 1.9 3e-06 27.7 0.6 2.9 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|347523945|ref|YP_004781515.1| - 6.2e-07 29.8 0.1 0.0086 16.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|347523945|ref|YP_004781515.1| - 0.00015 21.8 0.1 0.0027 17.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|347523945|ref|YP_004781515.1| - 0.00045 19.8 0.1 0.005 16.4 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|347523945|ref|YP_004781515.1| - 0.00048 20.5 0.8 0.21 11.9 0.2 2.4 2 0 0 2 2 2 1 AAA domain AAA_lid_2 PF17863.1 gi|347523945|ref|YP_004781515.1| - 0.00056 19.7 0.1 0.0015 18.3 0.1 1.7 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|347523945|ref|YP_004781515.1| - 0.001 18.5 1.4 0.017 14.5 0.1 2.8 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI DnaB_C PF03796.15 gi|347523945|ref|YP_004781515.1| - 0.0013 18.1 0.1 0.024 14.0 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain TFIID-31kDa PF02291.15 gi|347523945|ref|YP_004781515.1| - 0.0021 18.1 0.1 0.089 12.9 0.0 2.5 2 0 0 2 2 2 1 Transcription initiation factor IID, 31kD subunit AAA_33 PF13671.6 gi|347523945|ref|YP_004781515.1| - 0.0054 16.9 0.1 0.017 15.3 0.0 1.9 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.26 gi|347523945|ref|YP_004781515.1| - 0.0055 16.4 0.1 0.11 12.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|347523945|ref|YP_004781515.1| - 0.01 15.6 0.2 0.028 14.2 0.2 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|347523945|ref|YP_004781515.1| - 0.019 14.5 0.1 0.045 13.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|347523945|ref|YP_004781515.1| - 0.029 14.6 0.1 0.089 13.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|347523945|ref|YP_004781515.1| - 0.031 14.8 1.2 0.075 13.6 0.1 2.3 2 1 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|347523945|ref|YP_004781515.1| - 0.042 13.6 1.5 0.41 10.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain DUF150_C PF17384.2 gi|347523945|ref|YP_004781515.1| - 0.042 14.0 0.7 0.21 11.8 0.7 2.2 1 0 0 1 1 1 0 RimP C-terminal SH3 domain Zeta_toxin PF06414.12 gi|347523945|ref|YP_004781515.1| - 0.048 12.9 0.1 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.6 gi|347523945|ref|YP_004781515.1| - 0.078 13.4 0.9 1.9 8.9 0.0 3.1 3 0 0 3 3 3 0 AAA domain NACHT PF05729.12 gi|347523945|ref|YP_004781515.1| - 0.081 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|347523945|ref|YP_004781515.1| - 0.089 13.3 0.0 0.29 11.7 0.0 1.8 2 0 0 2 2 1 0 ABC transporter RNA_helicase PF00910.22 gi|347523945|ref|YP_004781515.1| - 0.092 13.1 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|347523945|ref|YP_004781515.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|347523945|ref|YP_004781515.1| - 0.12 12.4 0.1 0.82 9.7 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|347523945|ref|YP_004781515.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|347523945|ref|YP_004781515.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TsaE PF02367.17 gi|347523945|ref|YP_004781515.1| - 0.15 12.1 0.1 0.37 10.8 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|347523945|ref|YP_004781515.1| - 0.2 11.0 2.4 0.17 11.2 0.2 2.0 2 0 0 2 2 2 0 KaiC S1 PF00575.23 gi|347523945|ref|YP_004781515.1| - 0.3 11.4 2.5 0.8 10.1 1.0 2.4 2 1 0 2 2 2 0 S1 RNA binding domain Sua5_yciO_yrdC PF01300.18 gi|347523946|ref|YP_004781516.1| - 4.2e-44 150.2 0.0 4.9e-44 150.0 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Nitro_FeMo-Co PF02579.17 gi|347523947|ref|YP_004781517.1| - 1.9e-14 53.8 0.2 1e-13 51.4 0.0 1.8 2 0 0 2 2 2 1 Dinitrogenase iron-molybdenum cofactor UPF0047 PF01894.17 gi|347523949|ref|YP_004781519.1| - 1.5e-36 125.1 0.0 1.7e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Ribonuc_red_lgC PF02867.15 gi|347523949|ref|YP_004781519.1| - 0.033 12.7 0.0 0.039 12.5 0.0 1.1 1 0 0 1 1 1 0 Ribonucleotide reductase, barrel domain ATP-grasp_5 PF13549.6 gi|347523950|ref|YP_004781520.1| - 2.7e-84 282.1 0.1 3e-84 281.9 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|347523950|ref|YP_004781520.1| - 3.9e-09 36.4 0.0 5.1e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|347523950|ref|YP_004781520.1| - 0.00061 19.4 0.0 0.00091 18.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|347523950|ref|YP_004781520.1| - 0.011 15.3 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain OATP PF03137.20 gi|347523950|ref|YP_004781520.1| - 0.13 10.6 0.0 0.2 9.9 0.0 1.2 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Succ_CoA_lig PF13607.6 gi|347523951|ref|YP_004781521.1| - 3e-54 182.6 1.7 3e-54 182.6 1.7 1.8 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|347523951|ref|YP_004781521.1| - 4.2e-26 91.7 0.1 1.1e-25 90.4 0.1 1.8 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|347523951|ref|YP_004781521.1| - 1.4e-14 54.5 0.0 4.2e-14 53.0 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|347523951|ref|YP_004781521.1| - 0.011 15.7 0.0 0.05 13.6 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|347523951|ref|YP_004781521.1| - 0.25 11.9 4.9 12 6.6 0.3 3.8 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent AAA_13 PF13166.6 gi|347523953|ref|YP_004781523.1| - 5.2e-05 22.1 8.8 6.2e-05 21.9 8.8 1.1 1 0 0 1 1 1 1 AAA domain DUF812 PF05667.11 gi|347523953|ref|YP_004781523.1| - 5.7e-05 22.2 19.0 0.00038 19.5 19.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF812) Spc7 PF08317.11 gi|347523953|ref|YP_004781523.1| - 8.9e-05 21.5 27.9 0.0099 14.8 10.9 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein HTH_23 PF13384.6 gi|347523953|ref|YP_004781523.1| - 9.9e-05 22.0 0.1 0.00033 20.4 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|347523953|ref|YP_004781523.1| - 0.00011 21.9 2.6 0.00011 21.9 0.2 2.3 2 0 0 2 2 1 1 Helix-turn-helix domain ATG16 PF08614.11 gi|347523953|ref|YP_004781523.1| - 0.00012 22.4 22.7 0.013 15.7 10.0 2.3 2 0 0 2 2 2 2 Autophagy protein 16 (ATG16) Cnn_1N PF07989.11 gi|347523953|ref|YP_004781523.1| - 0.00019 21.5 20.1 0.0062 16.7 8.4 2.8 2 0 0 2 2 2 2 Centrosomin N-terminal motif 1 TMPIT PF07851.13 gi|347523953|ref|YP_004781523.1| - 0.00023 20.5 9.8 0.0004 19.7 9.8 1.5 1 0 0 1 1 1 1 TMPIT-like protein Sigma70_r4_2 PF08281.12 gi|347523953|ref|YP_004781523.1| - 0.00023 20.7 0.1 0.00023 20.7 0.1 2.7 4 0 0 4 4 1 1 Sigma-70, region 4 DUF4795 PF16043.5 gi|347523953|ref|YP_004781523.1| - 0.00031 20.4 13.3 0.00054 19.6 13.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) MscS_porin PF12795.7 gi|347523953|ref|YP_004781523.1| - 0.00033 20.3 9.8 0.00033 20.3 9.8 1.8 2 0 0 2 2 1 1 Mechanosensitive ion channel porin domain TSC22 PF01166.18 gi|347523953|ref|YP_004781523.1| - 0.00047 20.4 26.9 0.0011 19.2 7.8 3.8 2 1 1 3 3 3 1 TSC-22/dip/bun family TPR_MLP1_2 PF07926.12 gi|347523953|ref|YP_004781523.1| - 0.00057 19.9 29.1 0.0043 17.1 17.7 2.6 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein EzrA PF06160.12 gi|347523953|ref|YP_004781523.1| - 0.0006 18.1 17.1 0.0015 16.8 17.1 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4349 PF14257.6 gi|347523953|ref|YP_004781523.1| - 0.0007 19.1 6.0 0.0007 19.1 6.0 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4349) MIS13 PF08202.11 gi|347523953|ref|YP_004781523.1| - 0.00083 18.7 2.8 0.0011 18.4 2.8 1.2 1 0 0 1 1 1 1 Mis12-Mtw1 protein family HTH_28 PF13518.6 gi|347523953|ref|YP_004781523.1| - 0.001 19.2 0.3 0.0033 17.5 0.3 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HOOK PF05622.12 gi|347523953|ref|YP_004781523.1| - 0.0012 17.1 16.6 0.0022 16.2 16.6 1.4 1 0 0 1 1 1 1 HOOK protein BLOC1_2 PF10046.9 gi|347523953|ref|YP_004781523.1| - 0.0014 18.9 16.0 0.011 16.0 2.5 3.4 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lebercilin PF15619.6 gi|347523953|ref|YP_004781523.1| - 0.0014 18.3 28.0 0.053 13.2 26.7 2.3 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF4407 PF14362.6 gi|347523953|ref|YP_004781523.1| - 0.0018 17.7 6.9 0.0027 17.1 6.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Leu_zip PF15294.6 gi|347523953|ref|YP_004781523.1| - 0.0032 17.0 20.5 0.02 14.4 17.8 2.0 1 1 0 1 1 1 1 Leucine zipper COG6 PF06419.11 gi|347523953|ref|YP_004781523.1| - 0.0034 15.7 10.2 0.0034 15.7 2.7 2.1 1 1 1 2 2 2 1 Conserved oligomeric complex COG6 bZIP_1 PF00170.21 gi|347523953|ref|YP_004781523.1| - 0.0037 17.3 6.2 0.0037 17.3 6.2 4.4 5 0 0 5 5 3 1 bZIP transcription factor Terminase_5 PF06056.12 gi|347523953|ref|YP_004781523.1| - 0.0043 16.9 0.1 0.014 15.2 0.1 1.9 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Spectrin PF00435.21 gi|347523953|ref|YP_004781523.1| - 0.0048 17.4 17.6 0.0057 17.1 10.4 2.7 2 0 0 2 2 2 1 Spectrin repeat Laminin_II PF06009.12 gi|347523953|ref|YP_004781523.1| - 0.006 16.6 11.4 0.033 14.2 2.2 2.3 1 1 1 2 2 2 2 Laminin Domain II IFT57 PF10498.9 gi|347523953|ref|YP_004781523.1| - 0.0062 15.6 16.0 0.23 10.4 16.0 2.1 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|347523953|ref|YP_004781523.1| - 0.0075 16.3 8.8 0.38 10.8 2.4 2.4 1 1 0 2 2 2 1 Protein of unknown function (DUF1664) Filament PF00038.21 gi|347523953|ref|YP_004781523.1| - 0.008 15.8 22.6 0.015 14.9 14.9 2.4 1 1 1 2 2 2 2 Intermediate filament protein DUF3584 PF12128.8 gi|347523953|ref|YP_004781523.1| - 0.0081 13.7 18.0 0.011 13.4 4.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3584) UPF0242 PF06785.11 gi|347523953|ref|YP_004781523.1| - 0.01 15.9 24.5 0.053 13.6 24.5 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FlxA PF14282.6 gi|347523953|ref|YP_004781523.1| - 0.011 15.7 7.5 0.089 12.8 3.8 2.6 1 1 1 2 2 2 0 FlxA-like protein KxDL PF10241.9 gi|347523953|ref|YP_004781523.1| - 0.011 15.9 7.8 0.049 13.9 0.9 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein FapA PF03961.13 gi|347523953|ref|YP_004781523.1| - 0.012 14.2 15.3 0.041 12.5 15.3 1.7 1 1 0 1 1 1 0 Flagellar Assembly Protein A YabA PF06156.13 gi|347523953|ref|YP_004781523.1| - 0.013 16.2 18.4 22 5.8 18.4 2.8 1 1 0 1 1 1 0 Initiation control protein YabA ZapB PF06005.12 gi|347523953|ref|YP_004781523.1| - 0.014 15.8 31.8 0.46 11.0 13.1 3.3 1 1 1 2 2 2 0 Cell division protein ZapB Seryl_tRNA_N PF02403.22 gi|347523953|ref|YP_004781523.1| - 0.014 15.6 11.0 0.014 15.6 11.0 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ERM PF00769.19 gi|347523953|ref|YP_004781523.1| - 0.015 15.1 30.1 0.027 14.3 30.1 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Fzo_mitofusin PF04799.13 gi|347523953|ref|YP_004781523.1| - 0.015 14.8 0.3 0.015 14.8 0.3 2.7 1 1 0 2 2 2 0 fzo-like conserved region Uso1_p115_C PF04871.13 gi|347523953|ref|YP_004781523.1| - 0.017 15.5 20.9 0.2 12.0 8.1 2.5 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Swi5 PF07061.11 gi|347523953|ref|YP_004781523.1| - 0.019 15.0 20.8 0.11 12.6 4.5 3.9 2 1 1 3 3 2 0 Swi5 FlaC_arch PF05377.11 gi|347523953|ref|YP_004781523.1| - 0.021 15.2 28.9 0.11 12.9 2.8 4.6 5 0 0 5 5 3 0 Flagella accessory protein C (FlaC) PilJ PF13675.6 gi|347523953|ref|YP_004781523.1| - 0.021 14.8 3.6 0.14 12.2 0.8 2.6 2 1 1 3 3 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term ABC_tran_CTD PF16326.5 gi|347523953|ref|YP_004781523.1| - 0.022 15.0 10.4 0.022 15.0 10.4 4.2 2 2 1 3 3 2 0 ABC transporter C-terminal domain Snapin_Pallidin PF14712.6 gi|347523953|ref|YP_004781523.1| - 0.022 15.2 13.7 0.65 10.5 4.3 2.6 1 1 1 2 2 2 0 Snapin/Pallidin CALCOCO1 PF07888.11 gi|347523953|ref|YP_004781523.1| - 0.023 13.6 23.7 0.038 12.9 23.7 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like GerE PF00196.19 gi|347523953|ref|YP_004781523.1| - 0.024 14.2 0.1 0.069 12.7 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|347523953|ref|YP_004781523.1| - 0.025 14.6 0.1 0.14 12.2 0.0 2.4 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase WASH_WAHD PF11945.8 gi|347523953|ref|YP_004781523.1| - 0.027 14.0 2.8 0.043 13.3 2.8 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex FPP PF05911.11 gi|347523953|ref|YP_004781523.1| - 0.028 12.6 17.1 0.035 12.3 17.1 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil HTH_29 PF13551.6 gi|347523953|ref|YP_004781523.1| - 0.029 14.4 0.8 0.062 13.3 0.1 1.9 2 0 0 2 2 1 0 Winged helix-turn helix Laminin_I PF06008.14 gi|347523953|ref|YP_004781523.1| - 0.029 14.1 16.6 0.048 13.4 16.6 1.5 1 1 0 1 1 1 0 Laminin Domain I Herpes_BLRF2 PF05812.12 gi|347523953|ref|YP_004781523.1| - 0.03 14.5 2.1 0.03 14.5 2.1 3.2 1 1 2 3 3 2 0 Herpesvirus BLRF2 protein ADIP PF11559.8 gi|347523953|ref|YP_004781523.1| - 0.033 14.3 17.9 0.091 12.9 17.6 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding PPDK_N PF01326.19 gi|347523953|ref|YP_004781523.1| - 0.034 13.4 0.4 0.06 12.6 0.4 1.4 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WXG100 PF06013.12 gi|347523953|ref|YP_004781523.1| - 0.037 14.3 1.7 1.9 8.8 0.2 3.0 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF4763 PF15960.5 gi|347523953|ref|YP_004781523.1| - 0.042 13.1 14.5 0.12 11.7 14.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) NPV_P10 PF05531.12 gi|347523953|ref|YP_004781523.1| - 0.049 14.1 2.7 4.7 7.7 2.7 2.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein GAS PF13851.6 gi|347523953|ref|YP_004781523.1| - 0.051 12.9 25.9 1.3 8.3 11.4 2.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding HTH_19 PF12844.7 gi|347523953|ref|YP_004781523.1| - 0.051 13.6 0.1 0.051 13.6 0.1 3.6 2 1 0 2 2 1 0 Helix-turn-helix domain Tropomyosin PF00261.20 gi|347523953|ref|YP_004781523.1| - 0.054 12.9 32.5 0.015 14.7 28.9 1.8 2 0 0 2 2 1 0 Tropomyosin HTH_40 PF14493.6 gi|347523953|ref|YP_004781523.1| - 0.065 13.7 13.6 5.8 7.4 13.6 3.3 1 1 0 1 1 1 0 Helix-turn-helix domain Allexi_40kDa PF05549.11 gi|347523953|ref|YP_004781523.1| - 0.066 12.7 1.0 0.11 12.0 1.0 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein Lectin_N PF03954.14 gi|347523953|ref|YP_004781523.1| - 0.077 12.7 4.4 0.91 9.3 0.7 2.4 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Serine_rich PF08824.10 gi|347523953|ref|YP_004781523.1| - 0.078 13.0 2.3 0.17 11.9 2.3 1.5 1 0 0 1 1 1 0 Serine rich protein interaction domain Fib_alpha PF08702.10 gi|347523953|ref|YP_004781523.1| - 0.078 13.2 10.2 0.58 10.3 2.2 2.6 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family LMBR1 PF04791.16 gi|347523953|ref|YP_004781523.1| - 0.079 11.9 4.9 0.086 11.7 4.9 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Vps51 PF08700.11 gi|347523953|ref|YP_004781523.1| - 0.082 13.0 9.4 2.5 8.2 1.3 3.5 3 0 0 3 3 3 0 Vps51/Vps67 FliJ PF02050.16 gi|347523953|ref|YP_004781523.1| - 0.083 13.1 17.1 0.68 10.2 17.1 2.3 1 1 0 1 1 1 0 Flagellar FliJ protein PIN_8 PF18476.1 gi|347523953|ref|YP_004781523.1| - 0.084 12.7 5.2 0.15 11.9 5.2 1.4 1 0 0 1 1 1 0 PIN like domain YkuI_C PF10388.9 gi|347523953|ref|YP_004781523.1| - 0.088 12.6 3.2 0.14 11.9 3.2 1.2 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain Macoilin PF09726.9 gi|347523953|ref|YP_004781523.1| - 0.096 11.2 8.2 0.11 11.1 8.2 1.2 1 0 0 1 1 1 0 Macoilin family DUF16 PF01519.16 gi|347523953|ref|YP_004781523.1| - 0.1 13.1 14.4 0.21 12.1 6.9 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4559 PF15112.6 gi|347523953|ref|YP_004781523.1| - 0.11 12.2 6.3 0.17 11.6 6.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) SlyX PF04102.12 gi|347523953|ref|YP_004781523.1| - 0.11 13.1 0.5 0.11 13.1 0.5 4.7 3 1 2 5 5 4 0 SlyX GIT_CC PF16559.5 gi|347523953|ref|YP_004781523.1| - 0.11 12.4 14.0 0.12 12.3 1.0 3.3 3 1 1 4 4 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor MAD PF05557.13 gi|347523953|ref|YP_004781523.1| - 0.13 10.7 21.9 0.088 11.2 8.3 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein Fez1 PF06818.15 gi|347523953|ref|YP_004781523.1| - 0.13 12.7 23.4 0.13 12.7 21.8 1.7 2 0 0 2 2 1 0 Fez1 Tektin PF03148.14 gi|347523953|ref|YP_004781523.1| - 0.14 10.8 20.0 0.17 10.6 6.0 2.5 1 1 1 2 2 2 0 Tektin family FUSC PF04632.12 gi|347523953|ref|YP_004781523.1| - 0.14 10.6 5.2 0.25 9.8 5.2 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF948 PF06103.11 gi|347523953|ref|YP_004781523.1| - 0.16 12.3 3.5 2.2 8.6 0.6 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Cauli_AT PF03233.13 gi|347523953|ref|YP_004781523.1| - 0.18 11.7 10.9 1.1 9.2 1.1 2.3 1 1 1 2 2 2 0 Aphid transmission protein DHC_N2 PF08393.13 gi|347523953|ref|YP_004781523.1| - 0.19 10.8 6.9 0.31 10.1 6.9 1.2 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 2 CotH PF08757.11 gi|347523953|ref|YP_004781523.1| - 0.2 11.1 2.7 0.2 11.2 1.8 1.4 1 1 0 1 1 1 0 CotH kinase protein HTH_24 PF13412.6 gi|347523953|ref|YP_004781523.1| - 0.2 11.2 0.0 0.2 11.2 0.0 3.6 6 0 0 6 6 1 0 Winged helix-turn-helix DNA-binding HIP1_clath_bdg PF16515.5 gi|347523953|ref|YP_004781523.1| - 0.21 12.2 20.9 0.073 13.7 7.2 2.8 3 0 0 3 3 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 MCC-bdg_PDZ PF10506.9 gi|347523953|ref|YP_004781523.1| - 0.21 11.6 16.8 0.85 9.7 1.1 4.5 4 1 1 5 5 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Baculo_PEP_C PF04513.12 gi|347523953|ref|YP_004781523.1| - 0.22 11.6 0.1 0.87 9.6 0.1 2.0 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin_2 PF14523.6 gi|347523953|ref|YP_004781523.1| - 0.22 11.9 6.8 3.8 8.0 6.8 2.4 1 1 0 1 1 1 0 Syntaxin-like protein NYD-SP28_assoc PF14775.6 gi|347523953|ref|YP_004781523.1| - 0.22 11.6 22.5 0.37 10.9 1.4 3.5 3 0 0 3 3 3 0 Sperm tail C-terminal domain Syntaxin-6_N PF09177.11 gi|347523953|ref|YP_004781523.1| - 0.24 12.0 12.4 1.7 9.2 1.2 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Taxilin PF09728.9 gi|347523953|ref|YP_004781523.1| - 0.24 10.5 21.9 1.5 7.9 9.0 2.3 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Exonuc_VII_L PF02601.15 gi|347523953|ref|YP_004781523.1| - 0.27 10.8 10.8 0.49 9.9 10.7 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit HemX PF04375.14 gi|347523953|ref|YP_004781523.1| - 0.27 10.5 10.4 23 4.1 11.1 2.5 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase HTH_11 PF08279.12 gi|347523953|ref|YP_004781523.1| - 0.28 11.2 0.0 0.28 11.2 0.0 2.7 4 0 0 4 4 1 0 HTH domain Prefoldin PF02996.17 gi|347523953|ref|YP_004781523.1| - 0.31 11.0 23.0 0.27 11.2 1.3 3.7 2 2 1 3 3 3 0 Prefoldin subunit Syntaxin PF00804.25 gi|347523953|ref|YP_004781523.1| - 0.32 10.7 15.0 0.032 13.9 7.7 2.0 1 1 1 2 2 2 0 Syntaxin MIP-T3_C PF17749.1 gi|347523953|ref|YP_004781523.1| - 0.32 11.0 14.1 0.61 10.1 3.6 2.4 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region T3SSipB PF16535.5 gi|347523953|ref|YP_004781523.1| - 0.39 11.2 3.5 2.1 8.8 3.5 2.0 1 1 0 1 1 1 0 Type III cell invasion protein SipB THOC7 PF05615.13 gi|347523953|ref|YP_004781523.1| - 0.39 11.0 27.5 3.4 7.9 2.2 3.3 2 1 0 2 2 2 0 Tho complex subunit 7 Occludin_ELL PF07303.13 gi|347523953|ref|YP_004781523.1| - 0.41 11.4 15.3 2.7 8.8 7.9 3.0 2 1 1 3 3 2 0 Occludin homology domain STAT_alpha PF01017.20 gi|347523953|ref|YP_004781523.1| - 0.42 10.5 11.9 5.2 6.9 11.9 2.2 1 1 0 1 1 1 0 STAT protein, all-alpha domain PspA_IM30 PF04012.12 gi|347523953|ref|YP_004781523.1| - 0.42 10.1 22.7 1.2 8.6 22.3 2.0 1 1 0 1 1 1 0 PspA/IM30 family Phage_GPO PF05929.11 gi|347523953|ref|YP_004781523.1| - 0.43 10.1 11.4 2.2 7.8 1.9 2.2 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Atg14 PF10186.9 gi|347523953|ref|YP_004781523.1| - 0.44 9.6 19.5 1.8 7.6 19.6 1.9 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 RmuC PF02646.16 gi|347523953|ref|YP_004781523.1| - 0.45 9.6 13.4 1.4 7.9 2.5 2.8 2 1 0 3 3 2 0 RmuC family APG6_N PF17675.1 gi|347523953|ref|YP_004781523.1| - 0.46 11.0 35.6 4.6 7.8 13.5 2.6 1 1 1 2 2 2 0 Apg6 coiled-coil region DHR10 PF18595.1 gi|347523953|ref|YP_004781523.1| - 0.46 10.6 32.8 2.5 8.2 11.5 2.8 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain TBCC_N PF16752.5 gi|347523953|ref|YP_004781523.1| - 0.47 10.9 10.8 1.6 9.2 6.7 2.7 1 1 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain DUF3450 PF11932.8 gi|347523953|ref|YP_004781523.1| - 0.48 9.7 17.4 0.59 9.4 4.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF4201 PF13870.6 gi|347523953|ref|YP_004781523.1| - 0.51 10.1 27.6 14 5.3 17.7 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) LXG PF04740.12 gi|347523953|ref|YP_004781523.1| - 0.61 9.8 5.7 2.5 7.8 5.6 2.2 1 1 0 1 1 1 0 LXG domain of WXG superfamily CCDC106 PF15794.5 gi|347523953|ref|YP_004781523.1| - 0.61 9.7 21.2 0.055 13.2 6.6 2.4 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 106 HMMR_N PF15905.5 gi|347523953|ref|YP_004781523.1| - 0.62 9.5 28.4 0.47 9.9 25.6 2.1 1 1 1 2 2 1 0 Hyaluronan mediated motility receptor N-terminal Fmp27_WPPW PF10359.9 gi|347523953|ref|YP_004781523.1| - 0.62 8.9 15.9 3.5 6.4 16.0 1.9 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Spc24 PF08286.11 gi|347523953|ref|YP_004781523.1| - 0.68 10.2 23.5 2.4 8.4 3.2 3.8 2 1 0 3 3 2 0 Spc24 subunit of Ndc80 CENP-F_leu_zip PF10473.9 gi|347523953|ref|YP_004781523.1| - 0.68 9.9 36.0 2.7 8.0 31.6 3.1 2 1 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nup54 PF13874.6 gi|347523953|ref|YP_004781523.1| - 0.73 9.9 15.1 2.5 8.2 15.1 2.0 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DASH_Dam1 PF08653.10 gi|347523953|ref|YP_004781523.1| - 0.78 9.6 5.2 2 8.3 0.2 3.1 3 0 0 3 3 3 0 DASH complex subunit Dam1 Nif11 PF07862.11 gi|347523953|ref|YP_004781523.1| - 0.8 10.1 3.6 16 5.9 0.5 3.1 1 1 0 2 2 2 0 Nif11 domain Golgin_A5 PF09787.9 gi|347523953|ref|YP_004781523.1| - 0.85 9.0 23.1 0.39 10.1 16.0 2.1 1 1 1 2 2 2 0 Golgin subfamily A member 5 Bacillus_HBL PF05791.11 gi|347523953|ref|YP_004781523.1| - 0.87 9.4 2.7 14 5.5 2.6 2.5 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Jnk-SapK_ap_N PF09744.9 gi|347523953|ref|YP_004781523.1| - 0.95 9.7 29.5 0.92 9.7 13.6 2.7 1 1 0 2 2 2 0 JNK_SAPK-associated protein-1 RPW8 PF05659.11 gi|347523953|ref|YP_004781523.1| - 0.96 9.1 18.3 1.4 8.6 1.5 3.4 3 1 1 4 4 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF4618 PF15397.6 gi|347523953|ref|YP_004781523.1| - 1.2 8.5 18.6 2.5 7.5 4.5 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) KASH_CCD PF14662.6 gi|347523953|ref|YP_004781523.1| - 1.2 9.0 29.3 4.5 7.0 29.3 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Noelin-1 PF12308.8 gi|347523953|ref|YP_004781523.1| - 1.2 9.1 4.5 1.2 9.1 2.0 2.1 2 0 0 2 2 1 0 Neurogenesis glycoprotein Phage_GP20 PF06810.11 gi|347523953|ref|YP_004781523.1| - 1.2 8.9 19.2 2.9 7.7 4.0 3.2 1 1 2 3 3 3 0 Phage minor structural protein GP20 CENP-H PF05837.12 gi|347523953|ref|YP_004781523.1| - 1.2 9.5 22.0 1 9.8 13.0 2.7 1 1 1 2 2 2 0 Centromere protein H (CENP-H) AAA_23 PF13476.6 gi|347523953|ref|YP_004781523.1| - 1.3 9.5 26.8 1.2e+03 -0.2 26.8 2.2 1 1 0 1 1 0 0 AAA domain Phlebovirus_NSM PF07246.11 gi|347523953|ref|YP_004781523.1| - 1.3 8.3 7.4 5.3 6.3 7.4 1.8 1 1 0 1 1 1 0 Phlebovirus nonstructural protein NS-M CheZ PF04344.13 gi|347523953|ref|YP_004781523.1| - 1.3 8.9 7.6 12 5.8 0.9 2.3 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ Mod_r PF07200.13 gi|347523953|ref|YP_004781523.1| - 1.4 9.0 20.1 7 6.8 9.8 2.4 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein XhlA PF10779.9 gi|347523953|ref|YP_004781523.1| - 1.5 9.1 23.2 0.31 11.3 3.9 3.5 4 1 0 4 4 2 0 Haemolysin XhlA SOGA PF11365.8 gi|347523953|ref|YP_004781523.1| - 1.5 10.0 23.8 0.75 11.0 2.5 3.8 1 1 2 3 3 3 0 Protein SOGA TMF_DNA_bd PF12329.8 gi|347523953|ref|YP_004781523.1| - 1.5 8.9 37.4 1.8 8.6 9.1 3.4 3 1 0 3 3 2 0 TATA element modulatory factor 1 DNA binding DUF724 PF05266.14 gi|347523953|ref|YP_004781523.1| - 1.5 8.6 20.7 1.8 8.4 19.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) DivIC PF04977.15 gi|347523953|ref|YP_004781523.1| - 1.5 8.6 32.2 0.036 13.8 6.5 4.1 3 1 1 4 4 3 0 Septum formation initiator FlgN PF05130.12 gi|347523953|ref|YP_004781523.1| - 1.6 9.2 19.7 0.75 10.3 4.8 2.5 1 1 1 2 2 2 0 FlgN protein DUF1319 PF07028.11 gi|347523953|ref|YP_004781523.1| - 1.7 8.9 14.0 2.1 8.6 5.2 3.1 3 0 0 3 3 2 0 Protein of unknown function (DUF1319) V_ATPase_I PF01496.19 gi|347523953|ref|YP_004781523.1| - 1.7 6.4 13.3 3.1 5.6 11.4 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HSBP1 PF06825.12 gi|347523953|ref|YP_004781523.1| - 1.8 8.5 8.3 5.8 6.8 0.3 2.9 3 0 0 3 3 2 0 Heat shock factor binding protein 1 CC2-LZ PF16516.5 gi|347523953|ref|YP_004781523.1| - 1.9 8.9 19.9 1.1 9.7 5.8 3.0 1 1 1 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF2408 PF10303.9 gi|347523953|ref|YP_004781523.1| - 2.1 8.9 13.4 4.6 7.8 13.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Uds1 PF15456.6 gi|347523953|ref|YP_004781523.1| - 2.4 8.3 24.6 1.4 9.1 5.5 3.5 1 1 1 3 3 3 0 Up-regulated During Septation DUF4363 PF14276.6 gi|347523953|ref|YP_004781523.1| - 2.5 8.3 10.1 3.5 7.8 1.3 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4363) Ran-binding PF05508.11 gi|347523953|ref|YP_004781523.1| - 2.5 7.0 10.4 0.89 8.5 4.8 2.2 1 1 0 2 2 2 0 RanGTP-binding protein Prefoldin_2 PF01920.20 gi|347523953|ref|YP_004781523.1| - 2.6 8.1 32.6 1.6 8.7 6.9 3.9 4 0 0 4 4 3 0 Prefoldin subunit Sec34 PF04136.15 gi|347523953|ref|YP_004781523.1| - 2.6 7.9 8.9 4.6 7.1 1.1 2.3 1 1 0 2 2 2 0 Sec34-like family DASH_Duo1 PF08651.10 gi|347523953|ref|YP_004781523.1| - 2.6 7.9 11.4 7.6 6.4 1.8 3.3 3 0 0 3 3 3 0 DASH complex subunit Duo1 FTA4 PF13093.6 gi|347523953|ref|YP_004781523.1| - 2.7 7.8 14.4 6.8 6.5 7.0 2.3 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Prominin PF05478.11 gi|347523953|ref|YP_004781523.1| - 2.7 5.8 7.0 6.7 4.5 6.1 2.0 1 1 1 2 2 2 0 Prominin MctB PF11382.8 gi|347523953|ref|YP_004781523.1| - 2.8 7.6 4.4 8.3 6.0 4.4 1.8 1 1 0 1 1 1 0 Copper transport outer membrane protein, MctB Rootletin PF15035.6 gi|347523953|ref|YP_004781523.1| - 2.8 7.9 26.0 37 4.3 26.0 2.3 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion PV-1 PF06637.11 gi|347523953|ref|YP_004781523.1| - 2.9 6.6 18.6 4.5 6.0 18.6 1.3 1 0 0 1 1 1 0 PV-1 protein (PLVAP) GP41 PF00517.17 gi|347523953|ref|YP_004781523.1| - 3.3 7.6 4.4 9.7 6.0 0.2 2.6 1 1 2 3 3 2 0 Retroviral envelope protein DASH_Spc34 PF08657.10 gi|347523953|ref|YP_004781523.1| - 3.4 7.4 14.4 0.58 9.9 7.3 2.3 2 0 0 2 2 2 0 DASH complex subunit Spc34 DUF1043 PF06295.12 gi|347523953|ref|YP_004781523.1| - 3.5 7.6 10.9 2 8.4 0.7 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1043) Tropomyosin_1 PF12718.7 gi|347523953|ref|YP_004781523.1| - 3.6 7.7 35.2 5.1 7.2 32.3 2.6 2 1 0 2 2 1 0 Tropomyosin like DivIVA PF05103.13 gi|347523953|ref|YP_004781523.1| - 3.8 7.6 22.0 8.9 6.4 9.2 3.4 1 1 0 1 1 1 0 DivIVA protein SHE3 PF17078.5 gi|347523953|ref|YP_004781523.1| - 4 7.1 17.6 0.85 9.3 5.2 2.6 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 DUF4988 PF16378.5 gi|347523953|ref|YP_004781523.1| - 4 7.1 6.5 1.8 8.2 1.2 2.6 2 1 1 3 3 3 0 Domain of unknown function HTH_Tnp_1 PF01527.20 gi|347523953|ref|YP_004781523.1| - 4.1 7.8 23.0 1e+02 3.3 1.8 4.8 2 2 1 3 3 3 0 Transposase MIF4G_like_2 PF09090.11 gi|347523953|ref|YP_004781523.1| - 4.4 6.7 10.0 9 5.7 5.6 2.2 2 0 0 2 2 2 0 MIF4G like DUF4140 PF13600.6 gi|347523953|ref|YP_004781523.1| - 4.6 7.8 27.9 0.28 11.6 6.0 4.0 2 1 1 3 3 1 0 N-terminal domain of unknown function (DUF4140) FH2 PF02181.23 gi|347523953|ref|YP_004781523.1| - 5.2 6.1 15.4 1.5 7.8 7.3 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain ISG65-75 PF11727.8 gi|347523953|ref|YP_004781523.1| - 5.3 6.2 14.0 0.5 9.6 6.2 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein 3-PAP PF12578.8 gi|347523953|ref|YP_004781523.1| - 5.3 6.8 7.9 4.5 7.0 0.2 3.1 2 1 1 3 3 3 0 Myotubularin-associated protein UPF0184 PF03670.13 gi|347523953|ref|YP_004781523.1| - 5.4 7.5 9.9 7.3 7.1 0.8 3.0 1 1 2 3 3 2 0 Uncharacterised protein family (UPF0184) COG5 PF10392.9 gi|347523953|ref|YP_004781523.1| - 5.5 7.2 9.2 3.2 7.9 2.5 2.9 2 1 1 3 3 2 0 Golgi transport complex subunit 5 Tex_N PF09371.10 gi|347523953|ref|YP_004781523.1| - 5.6 6.6 21.9 1 9.0 1.1 3.2 1 1 2 3 3 3 0 Tex-like protein N-terminal domain Hemerythrin PF01814.23 gi|347523953|ref|YP_004781523.1| - 5.7 7.6 19.2 5.8 7.6 15.2 2.4 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain SesA PF17107.5 gi|347523953|ref|YP_004781523.1| - 5.8 7.1 9.4 4.1e+02 1.2 9.4 2.6 1 1 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases FemAB PF02388.16 gi|347523953|ref|YP_004781523.1| - 5.9 5.6 14.9 0.65 8.8 6.6 2.1 1 1 1 2 2 2 0 FemAB family Wtap PF17098.5 gi|347523953|ref|YP_004781523.1| - 6.4 6.7 25.2 1.4 8.9 14.4 2.8 1 1 1 2 2 2 0 WTAP/Mum2p family DUF2968 PF11180.8 gi|347523953|ref|YP_004781523.1| - 6.6 6.3 10.8 4 7.0 0.4 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF2968) Cluap1 PF10234.9 gi|347523953|ref|YP_004781523.1| - 7.3 5.9 18.9 29 3.9 18.6 1.8 1 1 0 1 1 1 0 Clusterin-associated protein-1 DUF2203 PF09969.9 gi|347523953|ref|YP_004781523.1| - 8 7.2 18.0 4.1 8.2 5.9 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF5082 PF16888.5 gi|347523953|ref|YP_004781523.1| - 8 6.8 17.0 50 4.2 10.5 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) TEX13 PF15186.6 gi|347523953|ref|YP_004781523.1| - 8.1 6.1 18.6 0.28 10.8 10.3 2.3 2 1 1 3 3 2 0 Testis-expressed sequence 13 protein family Rho_Binding PF08912.11 gi|347523953|ref|YP_004781523.1| - 8.9 7.2 25.7 5.3 7.9 9.5 3.3 1 1 0 2 2 2 0 Rho Binding CLZ PF16526.5 gi|347523953|ref|YP_004781523.1| - 9.6 6.6 24.5 2.9 8.3 6.4 4.0 3 1 1 4 4 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1515 PF07439.11 gi|347523953|ref|YP_004781523.1| - 10 6.2 9.9 13 5.8 2.2 2.8 1 1 2 3 3 2 0 Protein of unknown function (DUF1515) HATPase_c_2 PF13581.6 gi|347523954|ref|YP_004781524.1| - 0.13 12.2 0.1 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Ribosomal_S8e PF01201.22 gi|347523956|ref|YP_004781526.1| - 2.5e-36 124.9 0.6 2.8e-36 124.7 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e NTPase_I-T PF01931.18 gi|347523957|ref|YP_004781527.1| - 5.4e-49 166.1 0.0 6.1e-49 165.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Nha1_C PF08619.10 gi|347523959|ref|YP_004781529.1| - 0.076 12.2 0.8 0.07 12.3 0.8 1.0 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus TM_helix PF05552.12 gi|347523960|ref|YP_004781530.1| - 3.7e-07 30.0 1.0 3.7e-07 30.0 1.0 4.5 3 1 0 3 3 3 2 Conserved TM helix PGM_PMM_I PF02878.16 gi|347523961|ref|YP_004781531.1| - 8.2e-45 151.9 0.0 2.1e-44 150.6 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|347523961|ref|YP_004781531.1| - 8.7e-27 93.8 0.1 2.9e-26 92.1 0.1 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|347523961|ref|YP_004781531.1| - 8.7e-20 71.0 0.0 6.2e-19 68.3 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|347523961|ref|YP_004781531.1| - 1.6e-16 60.2 0.1 5.4e-16 58.5 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain AstE_AspA PF04952.14 gi|347523961|ref|YP_004781531.1| - 0.19 10.8 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Succinylglutamate desuccinylase / Aspartoacylase family Spermine_synth PF01564.17 gi|347523962|ref|YP_004781532.1| - 5.9e-54 182.3 0.0 2.5e-53 180.3 0.1 1.8 2 0 0 2 2 2 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|347523962|ref|YP_004781532.1| - 1.3e-13 50.6 0.1 3.3e-13 49.3 0.1 1.7 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|347523962|ref|YP_004781532.1| - 3.3e-05 24.5 0.0 0.00012 22.8 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347523962|ref|YP_004781532.1| - 4.6e-05 24.0 0.0 9.5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|347523962|ref|YP_004781532.1| - 0.0023 17.5 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.11 gi|347523962|ref|YP_004781532.1| - 0.0055 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|347523962|ref|YP_004781532.1| - 0.0086 15.4 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain Cons_hypoth95 PF03602.15 gi|347523962|ref|YP_004781532.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_5 PF01795.19 gi|347523962|ref|YP_004781532.1| - 0.022 14.3 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family Methyltransf_18 PF12847.7 gi|347523962|ref|YP_004781532.1| - 0.05 13.5 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Trm112p PF03966.16 gi|347523963|ref|YP_004781533.1| - 4.8e-13 49.5 6.2 1.9e-12 47.6 6.2 1.9 1 1 0 1 1 1 1 Trm112p-like protein DUF35_N PF12172.8 gi|347523963|ref|YP_004781533.1| - 0.021 14.7 0.7 0.51 10.3 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.15 gi|347523963|ref|YP_004781533.1| - 0.028 14.0 1.6 10 5.8 0.0 3.3 3 0 0 3 3 3 0 RecR protein zf-RING_7 PF02591.15 gi|347523963|ref|YP_004781533.1| - 0.038 14.2 0.6 0.038 14.2 0.6 2.4 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|347523963|ref|YP_004781533.1| - 0.043 13.5 1.7 0.34 10.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|347523963|ref|YP_004781533.1| - 0.13 12.3 3.0 7.4 6.6 0.0 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|347523963|ref|YP_004781533.1| - 0.58 10.9 5.3 1.4 9.7 5.3 1.8 1 1 0 1 1 1 0 zinc-ribbon family DZR PF12773.7 gi|347523963|ref|YP_004781533.1| - 1.7 8.7 5.0 8.4 6.5 5.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon MttA_Hcf106 PF02416.16 gi|347523965|ref|YP_004781535.1| - 3.3e-22 77.5 5.9 1.5e-21 75.5 0.5 2.2 2 0 0 2 2 2 2 mttA/Hcf106 family Prismane PF03063.20 gi|347523965|ref|YP_004781535.1| - 0.04 12.6 0.6 0.045 12.4 0.6 1.0 1 0 0 1 1 1 0 Prismane/CO dehydrogenase family DUF5510 PF17629.2 gi|347523965|ref|YP_004781535.1| - 0.076 13.0 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5510) DUF4274 PF14096.6 gi|347523965|ref|YP_004781535.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4274) Ibs_toxin PF13956.6 gi|347523965|ref|YP_004781535.1| - 1.1 9.4 4.8 1.7 8.8 4.8 1.2 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system RHH_1 PF01402.21 gi|347523965|ref|YP_004781535.1| - 1.5 8.9 5.7 0.77 9.8 0.3 2.7 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family TatC PF00902.18 gi|347523966|ref|YP_004781536.1| - 1.4e-51 175.3 15.4 2e-51 174.8 15.4 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) 3HCDH_N PF02737.18 gi|347523968|ref|YP_004781538.1| - 1.5e-70 236.8 1.2 2.7e-70 235.9 1.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|347523968|ref|YP_004781538.1| - 2.7e-60 203.8 0.2 4.9e-60 202.9 0.2 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|347523968|ref|YP_004781538.1| - 1.2e-49 166.8 1.0 1.4e-29 102.5 0.1 3.1 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|347523968|ref|YP_004781538.1| - 3.7e-35 122.0 1.0 5.3e-29 101.8 0.1 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|347523968|ref|YP_004781538.1| - 8.9e-07 29.0 0.2 7.3e-06 26.0 0.0 2.5 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|347523968|ref|YP_004781538.1| - 4.2e-05 23.8 0.1 0.0002 21.6 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|347523968|ref|YP_004781538.1| - 0.00018 20.8 0.3 0.00045 19.5 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|347523968|ref|YP_004781538.1| - 0.001 19.6 0.9 0.0056 17.2 0.4 2.6 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase SDH_sah PF01972.16 gi|347523968|ref|YP_004781538.1| - 0.0037 16.3 0.0 0.0069 15.4 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase adh_short PF00106.25 gi|347523968|ref|YP_004781538.1| - 0.01 15.3 0.1 0.021 14.3 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|347523968|ref|YP_004781538.1| - 0.035 13.7 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|347523968|ref|YP_004781538.1| - 0.04 13.2 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain adh_short_C2 PF13561.6 gi|347523968|ref|YP_004781538.1| - 0.056 13.0 0.1 0.18 11.3 0.0 1.9 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|347523968|ref|YP_004781538.1| - 0.087 13.1 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|347523968|ref|YP_004781538.1| - 0.093 13.3 0.1 0.34 11.5 0.1 2.1 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|347523968|ref|YP_004781538.1| - 0.097 12.0 0.2 0.17 11.1 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|347523968|ref|YP_004781538.1| - 0.1 12.9 0.3 0.45 10.8 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|347523968|ref|YP_004781538.1| - 0.13 12.7 0.1 0.37 11.3 0.1 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding TrmB PF01978.19 gi|347523969|ref|YP_004781539.1| - 1.3e-05 24.9 1.8 0.00017 21.4 0.0 3.1 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|347523969|ref|YP_004781539.1| - 2.2e-05 24.2 0.3 0.00022 21.0 0.3 2.9 1 0 0 1 1 1 1 MarR family MutS_III PF05192.18 gi|347523969|ref|YP_004781539.1| - 5.6e-05 23.5 2.1 13 6.0 10.7 4.0 2 2 1 3 3 3 0 MutS domain III AAA_22 PF13401.6 gi|347523969|ref|YP_004781539.1| - 0.0022 18.3 3.5 0.017 15.4 0.0 3.9 4 0 0 4 4 4 1 AAA domain DprA_WH PF17782.1 gi|347523969|ref|YP_004781539.1| - 0.0052 16.9 8.8 0.26 11.4 0.2 4.4 4 0 0 4 4 4 2 DprA winged helix domain DASH_Duo1 PF08651.10 gi|347523969|ref|YP_004781539.1| - 0.015 15.1 2.7 13 5.7 0.1 4.5 3 1 1 4 4 4 0 DASH complex subunit Duo1 DUF948 PF06103.11 gi|347523969|ref|YP_004781539.1| - 0.036 14.3 5.0 48 4.3 0.0 4.8 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) NB-ARC PF00931.22 gi|347523969|ref|YP_004781539.1| - 0.052 12.7 0.0 3.2 6.9 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain dCache_2 PF08269.11 gi|347523969|ref|YP_004781539.1| - 0.058 12.6 0.9 0.65 9.1 0.0 2.3 2 0 0 2 2 2 0 Cache domain AAA_13 PF13166.6 gi|347523969|ref|YP_004781539.1| - 0.1 11.2 3.6 4.3 5.8 1.1 2.3 2 0 0 2 2 2 0 AAA domain CtsR_C PF17727.1 gi|347523969|ref|YP_004781539.1| - 0.11 12.7 2.7 3.9 7.7 0.0 4.2 4 0 0 4 4 4 0 CtsR C-terminal dimerization domain Mnd1 PF03962.15 gi|347523969|ref|YP_004781539.1| - 0.16 12.3 0.1 14 6.1 0.0 2.9 2 0 0 2 2 2 0 Mnd1 HTH domain GrpE PF01025.19 gi|347523969|ref|YP_004781539.1| - 0.17 11.5 4.4 0.37 10.5 1.5 2.9 3 1 0 3 3 3 0 GrpE Syntaxin_2 PF14523.6 gi|347523969|ref|YP_004781539.1| - 0.2 12.0 5.2 1.8 9.0 1.8 3.6 3 1 0 3 3 2 0 Syntaxin-like protein phiKZ_IP PF12699.7 gi|347523969|ref|YP_004781539.1| - 0.25 10.4 4.0 0.14 11.3 0.8 2.2 2 1 0 2 2 2 0 phiKZ-like phage internal head proteins ECH_2 PF16113.5 gi|347523969|ref|YP_004781539.1| - 0.42 10.1 4.3 0.16 11.4 0.9 1.9 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase Laminin_I PF06008.14 gi|347523969|ref|YP_004781539.1| - 0.61 9.7 13.6 0.067 12.9 1.2 3.5 3 0 0 3 3 3 0 Laminin Domain I Fib_alpha PF08702.10 gi|347523969|ref|YP_004781539.1| - 0.64 10.2 5.1 3.3 7.9 0.9 3.5 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family RPW8 PF05659.11 gi|347523969|ref|YP_004781539.1| - 0.85 9.3 13.4 9.4 5.9 0.4 5.0 4 1 0 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 HTH_31 PF13560.6 gi|347523969|ref|YP_004781539.1| - 1.7 9.1 11.1 1.2 9.5 2.5 4.3 3 0 0 3 3 3 0 Helix-turn-helix domain FAP206 PF12018.8 gi|347523969|ref|YP_004781539.1| - 2.9 7.3 4.2 3.3 7.1 1.6 2.4 3 0 0 3 3 3 0 Domain of unknown function GAS PF13851.6 gi|347523969|ref|YP_004781539.1| - 3.3 7.0 8.0 0.62 9.4 2.9 2.3 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding KxDL PF10241.9 gi|347523969|ref|YP_004781539.1| - 3.3 8.1 5.1 11 6.4 0.1 3.5 2 1 1 3 3 3 0 Uncharacterized conserved protein DUF2203 PF09969.9 gi|347523969|ref|YP_004781539.1| - 3.8 8.3 13.2 69 4.2 0.0 5.0 3 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) DUF5518 PF17647.1 gi|347523970|ref|YP_004781540.1| - 0.0021 18.2 28.1 0.0028 17.8 28.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) ABC2_membrane PF01061.24 gi|347523970|ref|YP_004781540.1| - 4 6.8 13.5 0.91 8.9 6.7 2.0 1 1 1 2 2 2 0 ABC-2 type transporter Isochorismatase PF00857.20 gi|347523971|ref|YP_004781541.1| - 1.2e-53 181.9 0.0 1.4e-53 181.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family HALZ PF02183.18 gi|347523971|ref|YP_004781541.1| - 0.0046 17.2 0.2 0.0092 16.2 0.2 1.4 1 0 0 1 1 1 1 Homeobox associated leucine zipper Thioredoxin PF00085.20 gi|347523972|ref|YP_004781542.1| - 1.1e-08 35.0 0.0 1.8e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|347523972|ref|YP_004781542.1| - 2.5e-07 31.1 0.1 5.7e-07 30.0 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.15 gi|347523972|ref|YP_004781542.1| - 1.8e-05 24.7 22.0 0.00076 19.4 22.0 2.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.6 gi|347523972|ref|YP_004781542.1| - 0.00034 20.6 0.0 0.0011 19.0 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|347523972|ref|YP_004781542.1| - 0.022 14.9 2.6 1.2 9.3 0.1 2.5 2 1 0 3 3 3 0 Thioredoxin DsbD_2 PF13386.6 gi|347523972|ref|YP_004781542.1| - 0.029 14.3 31.1 0.84 9.5 19.3 2.7 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region PAPS_reduct PF01507.19 gi|347523973|ref|YP_004781543.1| - 1.3e-34 119.8 0.0 1.9e-34 119.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_21 PF14697.6 gi|347523973|ref|YP_004781543.1| - 4.5e-08 33.1 23.9 4.7e-07 29.8 13.1 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347523973|ref|YP_004781543.1| - 1.6e-07 30.8 25.3 2.1e-05 24.1 2.7 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347523973|ref|YP_004781543.1| - 4.8e-07 29.5 21.8 0.00015 21.6 3.1 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347523973|ref|YP_004781543.1| - 6.8e-07 29.4 10.9 6.8e-07 29.4 10.9 2.6 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347523973|ref|YP_004781543.1| - 1e-06 28.6 22.8 0.00013 21.9 2.4 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347523973|ref|YP_004781543.1| - 3.8e-06 27.4 12.5 3.8e-06 27.4 12.5 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523973|ref|YP_004781543.1| - 1.3e-05 25.2 23.6 0.00021 21.3 14.0 3.4 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523973|ref|YP_004781543.1| - 2.4e-05 24.8 6.4 0.014 15.9 0.4 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347523973|ref|YP_004781543.1| - 4.1e-05 24.0 6.6 0.035 14.6 0.1 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347523973|ref|YP_004781543.1| - 0.00059 20.7 13.6 0.012 16.5 4.2 3.0 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain tRNA_Me_trans PF03054.16 gi|347523973|ref|YP_004781543.1| - 0.0019 17.1 0.0 0.0029 16.4 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Fer4_18 PF13746.6 gi|347523973|ref|YP_004781543.1| - 0.0055 16.9 8.2 0.017 15.3 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain QueC PF06508.13 gi|347523973|ref|YP_004781543.1| - 0.007 15.9 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Fer4_4 PF12800.7 gi|347523973|ref|YP_004781543.1| - 0.015 15.8 1.5 0.015 15.8 1.5 4.1 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|347523973|ref|YP_004781543.1| - 0.1 13.4 5.5 5 8.0 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain NAD_synthase PF02540.17 gi|347523973|ref|YP_004781543.1| - 0.11 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Psb28 PF03912.14 gi|347523973|ref|YP_004781543.1| - 0.13 12.5 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Psb28 protein Fer4_3 PF12798.7 gi|347523973|ref|YP_004781543.1| - 0.4 11.7 26.1 0.095 13.7 5.4 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|347523973|ref|YP_004781543.1| - 0.86 10.4 8.7 8.8 7.2 1.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|347523973|ref|YP_004781543.1| - 7.6 7.2 21.6 0.2 12.2 2.7 3.9 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I ABC_tran PF00005.27 gi|347523974|ref|YP_004781544.1| - 2.2e-27 96.3 0.0 3.3e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523974|ref|YP_004781544.1| - 4.2e-16 59.6 0.1 3e-11 43.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|347523974|ref|YP_004781544.1| - 5.7e-05 23.8 0.0 0.00014 22.5 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.6 gi|347523974|ref|YP_004781544.1| - 5.9e-05 22.9 0.0 0.026 14.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|347523974|ref|YP_004781544.1| - 0.0019 17.9 0.0 0.0036 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|347523974|ref|YP_004781544.1| - 0.0023 18.5 0.0 0.0033 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|347523974|ref|YP_004781544.1| - 0.0027 17.5 0.1 1.2 8.9 0.0 2.6 3 0 0 3 3 3 2 IstB-like ATP binding protein MukB PF04310.12 gi|347523974|ref|YP_004781544.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA PF00004.29 gi|347523974|ref|YP_004781544.1| - 0.012 16.0 0.2 0.13 12.7 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|347523974|ref|YP_004781544.1| - 0.032 13.8 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|347523974|ref|YP_004781544.1| - 0.038 13.7 0.3 0.14 11.9 0.2 2.1 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|347523974|ref|YP_004781544.1| - 0.056 13.4 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|347523974|ref|YP_004781544.1| - 0.083 11.5 0.0 5.6 5.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|347523974|ref|YP_004781544.1| - 0.35 11.1 1.5 5 7.4 0.9 2.6 2 1 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|347523975|ref|YP_004781545.1| - 1e-05 25.1 24.0 7.9e-05 22.2 24.0 2.8 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|347523975|ref|YP_004781545.1| - 0.12 11.5 21.7 0.026 13.6 18.2 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|347523976|ref|YP_004781546.1| - 2.3e-05 23.9 14.3 2.3e-05 23.9 14.3 1.6 2 0 0 2 2 2 1 ABC-2 type transporter DUF2341 PF10102.9 gi|347523977|ref|YP_004781547.1| - 4e-19 69.0 0.0 5.3e-12 46.2 0.0 3.1 2 0 0 2 2 2 2 Domain of unknown function (DUF2341) Robl_LC7 PF03259.17 gi|347523978|ref|YP_004781548.1| - 3.7e-12 45.9 0.7 4.6e-12 45.5 0.7 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|347523978|ref|YP_004781548.1| - 3.7e-06 26.8 0.0 4.4e-06 26.5 0.0 1.0 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting HrcA_DNA-bdg PF03444.15 gi|347523979|ref|YP_004781549.1| - 4.4e-33 112.8 0.2 2.6e-32 110.3 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|347523979|ref|YP_004781549.1| - 5.9e-32 109.9 9.0 1.7e-15 57.2 0.1 3.3 4 0 0 4 4 4 2 CBS domain Rrf2 PF02082.20 gi|347523979|ref|YP_004781549.1| - 4.7e-09 36.5 0.1 4.7e-09 36.5 0.1 2.1 3 0 0 3 3 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|347523979|ref|YP_004781549.1| - 0.00019 21.3 0.9 0.00044 20.1 0.2 2.0 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|347523979|ref|YP_004781549.1| - 0.0025 17.6 0.0 0.0066 16.3 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|347523979|ref|YP_004781549.1| - 0.0047 16.7 0.1 0.017 14.9 0.0 2.1 2 0 0 2 2 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|347523979|ref|YP_004781549.1| - 0.0092 15.8 0.1 0.032 14.1 0.1 2.0 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|347523979|ref|YP_004781549.1| - 0.0094 15.6 0.3 2 8.1 0.1 3.8 4 0 0 4 4 4 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|347523979|ref|YP_004781549.1| - 0.035 14.1 0.1 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.6 gi|347523979|ref|YP_004781549.1| - 0.037 13.6 2.7 0.088 12.4 0.3 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|347523979|ref|YP_004781549.1| - 0.045 13.4 1.7 0.31 10.7 0.1 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|347523979|ref|YP_004781549.1| - 0.05 13.7 0.1 0.19 11.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|347523979|ref|YP_004781549.1| - 0.05 13.7 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 Rio2_N PF09202.11 gi|347523979|ref|YP_004781549.1| - 0.065 13.5 0.3 0.17 12.1 0.1 1.8 2 0 0 2 2 2 0 Rio2, N-terminal TusA PF01206.17 gi|347523979|ref|YP_004781549.1| - 0.071 13.0 0.0 0.77 9.6 0.0 2.5 2 1 0 2 2 2 0 Sulfurtransferase TusA HTH_5 PF01022.20 gi|347523979|ref|YP_004781549.1| - 0.12 12.3 0.3 0.27 11.1 0.3 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|347523979|ref|YP_004781549.1| - 0.19 11.7 0.1 0.39 10.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|347523979|ref|YP_004781549.1| - 0.74 9.6 2.6 2.1 8.2 0.2 2.8 3 1 0 3 3 3 0 Helix-turn-helix domain MoaE PF02391.17 gi|347523980|ref|YP_004781550.1| - 8.3e-07 29.3 0.0 1e-06 29.0 0.0 1.2 1 0 0 1 1 1 1 MoaE protein ABC_tran PF00005.27 gi|347523981|ref|YP_004781551.1| - 3.7e-20 72.8 0.0 5e-20 72.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347523981|ref|YP_004781551.1| - 1.6e-07 31.4 0.0 0.001 18.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347523981|ref|YP_004781551.1| - 0.00011 21.7 0.0 0.057 12.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|347523981|ref|YP_004781551.1| - 0.00015 21.4 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|347523981|ref|YP_004781551.1| - 0.00096 18.8 0.0 0.1 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|347523981|ref|YP_004781551.1| - 0.015 15.2 0.1 0.025 14.5 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|347523981|ref|YP_004781551.1| - 0.019 15.3 0.1 0.056 13.8 0.0 1.7 1 1 1 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|347523981|ref|YP_004781551.1| - 0.033 14.7 0.0 0.048 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|347523981|ref|YP_004781551.1| - 0.13 11.1 0.1 0.2 10.5 0.1 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_33 PF13671.6 gi|347523981|ref|YP_004781551.1| - 0.19 11.9 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|347523981|ref|YP_004781551.1| - 0.25 10.2 0.1 0.36 9.6 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) UPF0051 PF01458.17 gi|347523982|ref|YP_004781552.1| - 5.3e-57 193.0 0.0 6.4e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) GATase_7 PF13537.6 gi|347523983|ref|YP_004781553.1| - 4.6e-18 65.3 0.0 7.1e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|347523983|ref|YP_004781553.1| - 1.8e-17 63.8 0.0 3.7e-17 62.8 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain ACT PF01842.25 gi|347523983|ref|YP_004781553.1| - 0.00026 20.7 0.1 0.00061 19.5 0.1 1.7 1 0 0 1 1 1 1 ACT domain GATase_4 PF13230.6 gi|347523983|ref|YP_004781553.1| - 0.00062 18.8 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.21 gi|347523983|ref|YP_004781553.1| - 0.00093 18.0 0.0 0.1 11.3 0.0 2.4 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|347523984|ref|YP_004781554.1| - 6e-121 404.0 4.4 9.8e-121 403.3 4.4 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase GXGXG PF01493.19 gi|347523984|ref|YP_004781554.1| - 1e-21 77.4 12.2 2.1e-21 76.4 12.2 1.4 1 0 0 1 1 1 1 GXGXG motif Fer4_7 PF12838.7 gi|347523984|ref|YP_004781554.1| - 1.8e-10 41.2 18.4 1.2e-09 38.6 11.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347523984|ref|YP_004781554.1| - 7.4e-10 38.9 17.1 1.5e-08 34.7 8.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain FMN_dh PF01070.18 gi|347523984|ref|YP_004781554.1| - 3.2e-09 36.3 21.9 7.1e-08 31.9 14.4 3.2 3 1 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_21 PF14697.6 gi|347523984|ref|YP_004781554.1| - 3.4e-08 33.5 8.1 3.4e-08 33.5 8.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347523984|ref|YP_004781554.1| - 6.7e-08 32.5 16.9 7.1e-06 26.0 10.2 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain NMO PF03060.15 gi|347523984|ref|YP_004781554.1| - 1e-06 28.4 5.8 1.9e-06 27.5 5.8 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_16 PF13484.6 gi|347523984|ref|YP_004781554.1| - 1.2e-06 29.3 12.7 0.011 16.6 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Glu_syn_central PF04898.14 gi|347523984|ref|YP_004781554.1| - 2.8e-06 27.0 1.2 0.00025 20.6 0.3 3.2 3 0 0 3 3 3 1 Glutamate synthase central domain IMPDH PF00478.25 gi|347523984|ref|YP_004781554.1| - 1.1e-05 24.7 9.0 2.1e-05 23.7 6.6 2.5 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4 PF00037.27 gi|347523984|ref|YP_004781554.1| - 6.5e-05 22.6 26.5 0.0051 16.6 3.6 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|347523984|ref|YP_004781554.1| - 7.1e-05 22.7 25.6 0.015 15.3 1.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|347523984|ref|YP_004781554.1| - 0.00016 22.4 31.4 0.0015 19.3 5.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347523984|ref|YP_004781554.1| - 0.00019 21.3 28.5 0.00059 19.8 2.3 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain His_biosynth PF00977.21 gi|347523984|ref|YP_004781554.1| - 0.00031 20.3 1.3 0.00078 19.0 0.4 2.0 1 1 1 2 2 2 1 Histidine biosynthesis protein Fer4_8 PF13183.6 gi|347523984|ref|YP_004781554.1| - 0.0014 19.1 19.5 0.08 13.4 12.0 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|347523984|ref|YP_004781554.1| - 0.0022 18.8 11.6 0.018 15.9 0.1 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347523984|ref|YP_004781554.1| - 0.0023 18.4 18.7 1 9.9 2.0 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain QRPTase_C PF01729.19 gi|347523984|ref|YP_004781554.1| - 0.026 14.3 0.1 0.074 12.8 0.1 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Fer4_15 PF13459.6 gi|347523984|ref|YP_004781554.1| - 0.059 14.1 0.4 0.059 14.1 0.4 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain DHO_dh PF01180.21 gi|347523984|ref|YP_004781554.1| - 0.08 12.1 1.9 0.21 10.8 1.9 1.7 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase Fer4_4 PF12800.7 gi|347523984|ref|YP_004781554.1| - 0.17 12.5 24.1 0.3 11.7 1.6 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|347523984|ref|YP_004781554.1| - 0.77 10.0 18.2 0.56 10.4 3.8 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Ribul_P_3_epim PF00834.19 gi|347523984|ref|YP_004781554.1| - 3.6 6.9 6.8 6.4 6.1 0.4 2.7 3 0 0 3 3 3 0 Ribulose-phosphate 3 epimerase family Aminotran_1_2 PF00155.21 gi|347523985|ref|YP_004781555.1| - 3.8e-46 157.9 0.0 4.3e-46 157.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|347523985|ref|YP_004781555.1| - 0.00082 18.3 0.0 0.0065 15.4 0.0 2.0 1 1 1 2 2 2 1 Allinase NAD_synthase PF02540.17 gi|347523986|ref|YP_004781556.1| - 3e-70 236.1 0.0 3.4e-70 235.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|347523986|ref|YP_004781556.1| - 0.00018 20.4 0.3 0.01 14.7 0.1 2.1 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|347523986|ref|YP_004781556.1| - 0.039 13.5 0.1 0.28 10.6 0.1 2.1 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|347523986|ref|YP_004781556.1| - 0.086 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 PP-loop family Histidinol_dh PF00815.20 gi|347523987|ref|YP_004781557.1| - 4.7e-120 401.3 0.2 5.5e-120 401.1 0.2 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase ThiC_Rad_SAM PF01964.18 gi|347523988|ref|YP_004781558.1| - 1.1e-171 571.3 0.0 1.2e-171 571.2 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Methyltransf_31 PF13847.6 gi|347523988|ref|YP_004781558.1| - 0.012 15.5 0.0 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain His_biosynth PF00977.21 gi|347523989|ref|YP_004781559.1| - 9.1e-88 293.6 0.5 1e-87 293.4 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|347523989|ref|YP_004781559.1| - 1e-06 28.3 0.3 0.0011 18.3 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|347523989|ref|YP_004781559.1| - 2.3e-05 23.6 0.0 0.0016 17.6 0.0 2.2 1 1 0 2 2 2 1 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|347523989|ref|YP_004781559.1| - 0.00034 20.0 0.1 0.24 10.7 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase NMO PF03060.15 gi|347523989|ref|YP_004781559.1| - 0.00037 20.0 2.5 0.21 10.9 0.0 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|347523989|ref|YP_004781559.1| - 0.00038 19.6 1.4 0.067 12.2 0.4 2.1 1 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|347523989|ref|YP_004781559.1| - 0.0015 17.8 0.0 0.15 11.2 0.0 2.3 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|347523989|ref|YP_004781559.1| - 0.021 14.2 0.2 0.36 10.2 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator His_biosynth PF00977.21 gi|347523990|ref|YP_004781560.1| - 6.9e-54 182.7 0.7 7.7e-54 182.6 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|347523990|ref|YP_004781560.1| - 0.094 12.2 0.2 0.18 11.3 0.2 1.4 1 0 0 1 1 1 0 PcrB family HisG PF01634.18 gi|347523991|ref|YP_004781561.1| - 1.4e-50 171.4 0.0 1.8e-50 171.0 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|347523991|ref|YP_004781561.1| - 1.5e-19 69.9 1.3 3.6e-19 68.7 1.3 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain GvpK PF05121.12 gi|347523991|ref|YP_004781561.1| - 0.067 13.2 0.1 0.16 12.0 0.1 1.7 1 0 0 1 1 1 0 Gas vesicle protein K Hydant_A_N PF05378.13 gi|347523991|ref|YP_004781561.1| - 0.12 12.1 0.7 0.59 9.8 0.7 2.0 1 1 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region CbiX PF01903.17 gi|347523991|ref|YP_004781561.1| - 0.16 12.4 0.2 1.5 9.1 0.2 2.4 2 0 0 2 2 2 0 CbiX TBP PF00352.21 gi|347523992|ref|YP_004781562.1| - 1.7e-63 210.6 0.9 4.9e-31 106.5 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|347523992|ref|YP_004781562.1| - 3e-08 33.7 0.1 0.011 15.8 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF4015 PF13200.6 gi|347523992|ref|YP_004781562.1| - 0.057 12.5 0.0 0.095 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative glycosyl hydrolase domain PucR PF07905.11 gi|347523992|ref|YP_004781562.1| - 0.058 13.7 0.1 0.33 11.2 0.0 2.2 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family Cytidylate_kin2 PF13189.6 gi|347523992|ref|YP_004781562.1| - 0.059 13.5 0.0 0.097 12.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase-like family Trm56 PF01994.16 gi|347523992|ref|YP_004781562.1| - 0.13 12.2 0.4 0.56 10.1 0.1 2.0 2 0 0 2 2 2 0 tRNA ribose 2'-O-methyltransferase, aTrm56 Metallophos PF00149.28 gi|347523993|ref|YP_004781563.1| - 1.7e-09 38.5 1.0 8.6e-09 36.2 1.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|347523993|ref|YP_004781563.1| - 1.8e-06 28.2 0.1 2.7e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Hpr_kinase_N PF02603.16 gi|347523993|ref|YP_004781563.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus Resolvase PF00239.21 gi|347523993|ref|YP_004781563.1| - 0.024 14.8 0.1 0.04 14.0 0.1 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain Rhomboid_N PF12122.8 gi|347523993|ref|YP_004781563.1| - 0.084 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Cytoplasmic N-terminal domain of rhomboid serine protease Ribosomal_L38e PF01781.18 gi|347523994|ref|YP_004781564.1| - 1.3e-10 41.2 1.5 2.1e-10 40.6 1.5 1.4 1 0 0 1 1 1 1 Ribosomal L38e protein family DUF5093 PF17011.5 gi|347523994|ref|YP_004781564.1| - 0.026 14.8 0.2 0.046 14.0 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5093) Beta-Casp PF10996.8 gi|347523995|ref|YP_004781565.1| - 8.3e-17 61.5 0.0 1.6e-16 60.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|347523995|ref|YP_004781565.1| - 9.2e-15 55.2 3.4 4.9e-14 52.8 1.4 2.5 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|347523995|ref|YP_004781565.1| - 4.7e-14 52.1 0.0 9.9e-14 51.0 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|347523995|ref|YP_004781565.1| - 2.3e-11 43.6 0.1 1.4e-10 41.0 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|347523995|ref|YP_004781565.1| - 1.8e-10 40.6 0.0 2.8e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|347523995|ref|YP_004781565.1| - 0.0012 18.8 0.0 0.0062 16.4 0.0 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain ZapB PF06005.12 gi|347523997|ref|YP_004781567.1| - 0.037 14.5 1.3 0.037 14.5 1.3 2.3 2 0 0 2 2 2 0 Cell division protein ZapB MutS_III PF05192.18 gi|347523997|ref|YP_004781567.1| - 0.28 11.4 8.3 3.9 7.6 7.4 2.3 1 1 1 2 2 2 0 MutS domain III rRNA_proc-arch PF13234.6 gi|347523997|ref|YP_004781567.1| - 0.3 11.0 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 rRNA-processing arch domain DUF948 PF06103.11 gi|347523997|ref|YP_004781567.1| - 0.32 11.3 4.2 0.85 9.9 0.1 3.7 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) FapA PF03961.13 gi|347523997|ref|YP_004781567.1| - 1.5 7.3 3.4 0.87 8.1 1.1 1.6 1 1 0 1 1 1 0 Flagellar Assembly Protein A FlgN PF05130.12 gi|347523997|ref|YP_004781567.1| - 3.2 8.2 10.7 0.13 12.7 2.3 2.3 2 1 0 2 2 2 0 FlgN protein YabA PF06156.13 gi|347523997|ref|YP_004781567.1| - 5.9 7.6 4.9 18 6.0 0.5 2.4 2 0 0 2 2 2 0 Initiation control protein YabA eIF2_C PF09173.11 gi|347523998|ref|YP_004781568.1| - 1.8e-30 105.0 0.6 4.5e-30 103.7 0.6 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|347523998|ref|YP_004781568.1| - 9.7e-30 103.6 0.1 6.5e-29 100.9 0.1 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|347523998|ref|YP_004781568.1| - 3.1e-09 37.1 5.1 1.1e-08 35.4 2.2 2.9 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|347523998|ref|YP_004781568.1| - 0.00016 21.7 0.0 0.00035 20.6 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|347523998|ref|YP_004781568.1| - 0.0024 17.8 0.2 0.073 13.0 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase PduV-EutP PF10662.9 gi|347523998|ref|YP_004781568.1| - 0.0042 16.8 0.9 3.3 7.4 0.1 2.6 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|347523998|ref|YP_004781568.1| - 0.0049 16.4 1.3 3.8 7.0 0.1 3.2 3 0 0 3 3 3 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|347523998|ref|YP_004781568.1| - 0.027 14.5 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Metallophos_2 PF12850.7 gi|347523999|ref|YP_004781569.1| - 7.3e-15 55.5 2.0 1.2e-14 54.8 2.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|347523999|ref|YP_004781569.1| - 6.5e-10 39.9 3.3 2.6e-09 37.9 3.3 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|347523999|ref|YP_004781569.1| - 1.5e-09 37.6 2.8 8.3e-07 28.6 1.2 3.0 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily GlgS PF08971.11 gi|347523999|ref|YP_004781569.1| - 0.057 13.5 0.1 0.32 11.0 0.1 2.1 1 1 0 1 1 1 0 Glycogen synthesis protein TolA_bind_tri PF16331.5 gi|347524000|ref|YP_004781570.1| - 0.027 14.5 1.4 0.056 13.5 1.4 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation ZapB PF06005.12 gi|347524000|ref|YP_004781570.1| - 0.044 14.2 1.7 0.082 13.4 1.7 1.5 1 0 0 1 1 1 0 Cell division protein ZapB BLOC1_2 PF10046.9 gi|347524000|ref|YP_004781570.1| - 0.084 13.2 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|347524000|ref|YP_004781570.1| - 0.2 12.1 0.6 0.42 11.0 0.6 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.8 gi|347524000|ref|YP_004781570.1| - 0.61 10.3 4.6 0.2 11.9 1.2 1.8 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding LDcluster4 PF18306.1 gi|347524001|ref|YP_004781571.1| - 4.5e-18 65.3 0.1 5.3e-18 65.1 0.1 1.0 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 gi|347524001|ref|YP_004781571.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 SLOG in TRPM, prokaryote DUF354 PF04007.12 gi|347524001|ref|YP_004781571.1| - 0.032 13.3 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) NAD_binding_10 PF13460.6 gi|347524001|ref|YP_004781571.1| - 0.085 12.7 0.6 0.26 11.2 0.1 1.8 1 1 1 2 2 2 0 NAD(P)H-binding Lant_dehydr_C PF14028.6 gi|347524002|ref|YP_004781572.1| - 0.15 11.6 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term Inositol_P PF00459.25 gi|347524003|ref|YP_004781573.1| - 7.9e-16 58.4 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|347524003|ref|YP_004781573.1| - 0.00049 19.6 0.0 0.00079 19.0 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Hydrolase_3 PF08282.12 gi|347524004|ref|YP_004781574.1| - 1.2e-23 84.2 0.0 2.4e-12 47.2 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|347524004|ref|YP_004781574.1| - 5.8e-07 29.3 0.1 3.8e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|347524004|ref|YP_004781574.1| - 4.8e-06 27.0 0.4 0.6 10.4 0.0 3.3 2 2 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|347524004|ref|YP_004781574.1| - 2.8e-05 24.6 0.4 0.024 15.1 0.0 2.9 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|347524004|ref|YP_004781574.1| - 0.0037 17.4 0.0 0.22 11.6 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|347524004|ref|YP_004781574.1| - 0.014 15.5 0.1 0.041 14.0 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase AA_kinase PF00696.28 gi|347524004|ref|YP_004781574.1| - 0.061 12.9 0.0 0.12 11.9 0.0 1.5 2 0 0 2 2 2 0 Amino acid kinase family Hydrolase_like PF13242.6 gi|347524004|ref|YP_004781574.1| - 0.078 13.0 0.2 0.24 11.5 0.2 1.8 1 1 0 1 1 1 0 HAD-hyrolase-like Lig_C PF18330.1 gi|347524005|ref|YP_004781575.1| - 4.7e-26 91.2 0.1 8.7e-26 90.4 0.1 1.5 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|347524005|ref|YP_004781575.1| - 3e-20 73.2 0.1 4.6e-20 72.5 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|347524005|ref|YP_004781575.1| - 5.4e-05 22.9 0.0 0.13 11.9 0.0 2.7 3 0 0 3 3 3 2 ATP dependent DNA ligase domain Bacteriocin_IIi PF11758.8 gi|347524005|ref|YP_004781575.1| - 0.042 13.7 0.1 0.31 10.9 0.0 2.3 2 0 0 2 2 2 0 Aureocin-like type II bacteriocin Radical_SAM PF04055.21 gi|347524005|ref|YP_004781575.1| - 0.059 13.8 0.1 0.25 11.7 0.1 2.0 1 1 0 1 1 1 0 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|347524005|ref|YP_004781575.1| - 0.16 11.4 0.0 0.38 10.1 0.0 1.7 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel NAD_binding_2 PF03446.15 gi|347524007|ref|YP_004781577.1| - 2e-12 47.5 0.0 3.2e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|347524007|ref|YP_004781577.1| - 2.1e-07 31.2 0.0 4e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 gi|347524007|ref|YP_004781577.1| - 0.022 14.6 0.5 0.093 12.6 0.0 2.2 3 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|347524007|ref|YP_004781577.1| - 0.087 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|347524007|ref|YP_004781577.1| - 0.19 11.3 0.1 9.7 5.7 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DJ-1_PfpI PF01965.24 gi|347524008|ref|YP_004781578.1| - 0.065 13.0 0.0 0.083 12.7 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family DHQ_synthase PF01761.20 gi|347524009|ref|YP_004781579.1| - 4.3e-79 265.4 0.0 5.1e-79 265.1 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|347524009|ref|YP_004781579.1| - 4.8e-10 39.5 0.1 1.4e-08 34.8 0.1 2.1 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|347524009|ref|YP_004781579.1| - 0.00016 20.7 0.1 0.00032 19.6 0.1 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase UBA_6 PF18039.1 gi|347524009|ref|YP_004781579.1| - 0.09 12.7 0.0 0.44 10.5 0.0 2.2 2 0 0 2 2 2 0 UBA-like domain DUF3388 PF11868.8 gi|347524009|ref|YP_004781579.1| - 0.21 10.9 0.0 0.4 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3388) Transketolase_N PF00456.21 gi|347524010|ref|YP_004781580.1| - 3.4e-35 121.6 0.0 4.6e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|347524010|ref|YP_004781580.1| - 2.4e-13 49.9 0.0 1.2e-11 44.4 0.0 2.2 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|347524010|ref|YP_004781580.1| - 2.2e-06 26.8 0.0 3.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|347524010|ref|YP_004781580.1| - 0.00035 20.4 0.2 0.013 15.2 0.2 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.24 gi|347524011|ref|YP_004781581.1| - 1.8e-38 132.0 0.2 2.8e-38 131.3 0.2 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|347524011|ref|YP_004781581.1| - 4.6e-28 97.6 0.0 7.3e-28 96.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PDH PF02153.17 gi|347524012|ref|YP_004781582.1| - 8.7e-25 87.2 0.0 1.2e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.21 gi|347524012|ref|YP_004781582.1| - 3.5e-19 68.9 0.1 2.7e-18 66.1 0.0 2.5 2 0 0 2 2 2 1 Chorismate mutase type II F420_oxidored PF03807.17 gi|347524012|ref|YP_004781582.1| - 1.1e-13 51.6 0.0 3e-13 50.2 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|347524012|ref|YP_004781582.1| - 2.5e-07 31.0 0.0 7.3e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|347524012|ref|YP_004781582.1| - 1.2e-06 28.0 0.0 2.3e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|347524012|ref|YP_004781582.1| - 2e-06 27.5 0.0 3.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|347524012|ref|YP_004781582.1| - 3.7e-05 23.8 0.0 0.00016 21.7 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.21 gi|347524012|ref|YP_004781582.1| - 9.5e-05 22.5 0.0 0.0002 21.4 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|347524012|ref|YP_004781582.1| - 0.016 15.2 0.1 0.13 12.2 0.1 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2827 PF10933.8 gi|347524012|ref|YP_004781582.1| - 0.019 13.7 0.1 0.78 8.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2827) GFO_IDH_MocA PF01408.22 gi|347524012|ref|YP_004781582.1| - 0.028 15.2 0.0 0.061 14.1 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|347524012|ref|YP_004781582.1| - 0.031 14.2 0.0 0.079 12.8 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1845 PF08900.11 gi|347524012|ref|YP_004781582.1| - 0.036 13.8 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1845) Rossmann-like PF10727.9 gi|347524012|ref|YP_004781582.1| - 0.044 13.7 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain HD_2 PF12917.7 gi|347524012|ref|YP_004781582.1| - 0.044 13.5 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 HD containing hydrolase-like enzyme Hydrolase PF00702.26 gi|347524012|ref|YP_004781582.1| - 0.066 13.5 0.0 0.22 11.8 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase UDPG_MGDP_dh_C PF03720.15 gi|347524012|ref|YP_004781582.1| - 0.07 13.6 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GST_N PF02798.20 gi|347524012|ref|YP_004781582.1| - 0.13 12.7 0.0 0.82 10.1 0.0 2.2 2 0 0 2 2 2 0 Glutathione S-transferase, N-terminal domain MCD_N PF17408.2 gi|347524012|ref|YP_004781582.1| - 0.28 11.3 1.3 1.4 9.1 1.3 2.2 1 1 0 1 1 1 0 Malonyl-CoA decarboxylase N-terminal domain NTP_transferase PF00483.23 gi|347524013|ref|YP_004781583.1| - 2.1e-23 83.2 0.0 2.6e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|347524013|ref|YP_004781583.1| - 5.6e-13 49.6 0.1 5.2e-12 46.4 0.0 2.1 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|347524013|ref|YP_004781583.1| - 4.6e-11 42.0 11.9 0.00029 20.4 0.5 5.4 4 1 2 6 6 6 4 Bacterial transferase hexapeptide (six repeats) Glyco_tranf_2_3 PF13641.6 gi|347524013|ref|YP_004781583.1| - 0.00013 21.9 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 IspD PF01128.19 gi|347524013|ref|YP_004781583.1| - 0.0015 18.3 0.0 0.0063 16.3 0.0 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Propep_M14 PF02244.16 gi|347524013|ref|YP_004781583.1| - 0.029 14.7 0.2 0.09 13.2 0.0 1.9 2 0 0 2 2 2 0 Carboxypeptidase activation peptide Metallophos_2 PF12850.7 gi|347524015|ref|YP_004781585.1| - 3.9e-26 92.2 0.0 5.3e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|347524015|ref|YP_004781585.1| - 1.7e-07 31.9 0.1 0.00022 21.8 0.0 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF2250 PF10007.9 gi|347524016|ref|YP_004781586.1| - 0.00016 21.7 0.0 0.0003 20.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|347524016|ref|YP_004781586.1| - 0.00047 19.9 0.0 0.00062 19.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|347524016|ref|YP_004781586.1| - 0.012 15.6 0.5 0.025 14.5 0.5 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|347524016|ref|YP_004781586.1| - 0.017 15.0 0.1 0.039 13.8 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|347524016|ref|YP_004781586.1| - 0.045 13.4 1.4 0.077 12.7 0.1 2.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family ATP_bind_1 PF03029.17 gi|347524017|ref|YP_004781587.1| - 1.8e-56 191.7 0.0 2e-56 191.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|347524017|ref|YP_004781587.1| - 3.6e-06 26.7 0.1 8.5e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|347524017|ref|YP_004781587.1| - 4.5e-06 25.9 0.0 9.9e-05 21.4 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|347524017|ref|YP_004781587.1| - 2.5e-05 24.3 0.0 3.4e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|347524017|ref|YP_004781587.1| - 0.00011 22.1 0.0 0.002 18.1 0.0 2.2 1 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|347524017|ref|YP_004781587.1| - 0.0002 20.7 0.0 0.00027 20.2 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase CLP1_P PF16575.5 gi|347524017|ref|YP_004781587.1| - 0.0018 18.1 0.0 0.019 14.8 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|347524017|ref|YP_004781587.1| - 0.0018 18.0 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|347524017|ref|YP_004781587.1| - 0.0022 17.6 0.1 0.34 10.4 0.1 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|347524017|ref|YP_004781587.1| - 0.0041 17.5 0.0 0.0074 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|347524017|ref|YP_004781587.1| - 0.0067 16.2 0.0 0.0097 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|347524017|ref|YP_004781587.1| - 0.019 14.9 0.1 0.045 13.7 0.1 1.7 1 1 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|347524017|ref|YP_004781587.1| - 0.025 14.5 0.0 0.065 13.1 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|347524017|ref|YP_004781587.1| - 0.029 14.1 0.5 2 8.2 0.0 3.2 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.12 gi|347524017|ref|YP_004781587.1| - 0.039 13.9 0.0 0.076 12.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Thymidylate_kin PF02223.17 gi|347524017|ref|YP_004781587.1| - 0.045 13.4 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_22 PF13401.6 gi|347524017|ref|YP_004781587.1| - 0.054 13.8 0.0 0.082 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|347524017|ref|YP_004781587.1| - 0.065 13.8 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|347524017|ref|YP_004781587.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 cobW PF02492.19 gi|347524017|ref|YP_004781587.1| - 0.12 11.9 0.3 1.4 8.5 0.0 2.1 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|347524017|ref|YP_004781587.1| - 0.16 12.3 0.0 1.3 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|347524017|ref|YP_004781587.1| - 0.17 10.9 0.0 0.28 10.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|347524017|ref|YP_004781587.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|347524017|ref|YP_004781587.1| - 0.22 10.4 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain tRNA_NucTransf2 PF09249.11 gi|347524018|ref|YP_004781588.1| - 2.9e-46 156.4 0.0 4.2e-46 155.8 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|347524018|ref|YP_004781588.1| - 3.2e-10 40.2 0.1 7.4e-10 39.0 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|347524018|ref|YP_004781588.1| - 0.0008 19.6 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|347524018|ref|YP_004781588.1| - 0.099 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Methyltransf_25 PF13649.6 gi|347524019|ref|YP_004781589.1| - 0.0011 19.7 0.0 0.0016 19.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347524019|ref|YP_004781589.1| - 0.0062 17.3 0.0 0.032 15.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347524019|ref|YP_004781589.1| - 0.0083 16.8 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|347524019|ref|YP_004781589.1| - 0.03 13.4 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Snf7 PF03357.21 gi|347524020|ref|YP_004781590.1| - 0.0002 21.0 4.6 0.00032 20.4 4.6 1.4 1 1 0 1 1 1 1 Snf7 DUF2931 PF11153.8 gi|347524021|ref|YP_004781591.1| - 0.081 12.6 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2931) Radical_SAM PF04055.21 gi|347524022|ref|YP_004781592.1| - 2.9e-16 60.3 0.1 4.2e-16 59.8 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347524022|ref|YP_004781592.1| - 4.7e-05 23.7 0.0 7e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347524022|ref|YP_004781592.1| - 0.0002 21.5 0.0 0.00044 20.4 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain HTH_34 PF13601.6 gi|347524022|ref|YP_004781592.1| - 0.013 15.7 0.0 0.023 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain CinA_KH PF18146.1 gi|347524022|ref|YP_004781592.1| - 0.097 12.8 0.0 0.31 11.2 0.0 1.8 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain MoeA_N PF03453.17 gi|347524023|ref|YP_004781593.1| - 9.3e-34 116.5 3.9 2.1e-33 115.3 3.9 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|347524023|ref|YP_004781593.1| - 1.5e-22 79.8 0.0 3.8e-22 78.5 0.0 1.7 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|347524023|ref|YP_004781593.1| - 1.7e-08 34.5 0.1 5.8e-08 32.8 0.0 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) T2SSE PF00437.20 gi|347524023|ref|YP_004781593.1| - 0.0038 16.3 0.0 0.0084 15.2 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PBP_like PF12727.7 gi|347524023|ref|YP_004781593.1| - 0.047 12.8 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 PBP superfamily domain MoeA_N PF03453.17 gi|347524024|ref|YP_004781594.1| - 1.6e-36 125.5 0.5 2.6e-36 124.8 0.5 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|347524024|ref|YP_004781594.1| - 2.3e-21 76.0 0.0 3.7e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|347524024|ref|YP_004781594.1| - 3e-09 36.9 0.1 7.5e-09 35.7 0.1 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) 7TMR-HDED PF07697.11 gi|347524024|ref|YP_004781594.1| - 0.055 13.6 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 7TM-HD extracellular DUF4934 PF16288.5 gi|347524024|ref|YP_004781594.1| - 0.082 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4934) CitMHS PF03600.16 gi|347524025|ref|YP_004781595.1| - 8.5e-25 87.6 72.6 2.7e-23 82.6 41.0 2.4 2 1 1 3 3 3 2 Citrate transporter ArsB PF02040.15 gi|347524025|ref|YP_004781595.1| - 3.4e-06 26.6 31.9 3.7e-05 23.2 31.9 2.3 1 1 0 1 1 1 1 Arsenical pump membrane protein MitoNEET_N PF10660.9 gi|347524025|ref|YP_004781595.1| - 1.9 8.6 5.9 37 4.4 0.2 4.0 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF123 PF01986.16 gi|347524026|ref|YP_004781596.1| - 5.1e-23 81.4 0.0 6.8e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 FAD_binding_2 PF00890.24 gi|347524026|ref|YP_004781596.1| - 0.16 11.0 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain TrmB PF01978.19 gi|347524027|ref|YP_004781597.1| - 7.5e-14 51.4 0.0 1e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|347524027|ref|YP_004781597.1| - 5.5e-07 29.4 0.1 8.5e-07 28.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|347524027|ref|YP_004781597.1| - 6.5e-07 28.8 0.1 1.2e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|347524027|ref|YP_004781597.1| - 5.9e-06 26.1 0.0 9.9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|347524027|ref|YP_004781597.1| - 9.1e-06 25.4 0.1 1.9e-05 24.4 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|347524027|ref|YP_004781597.1| - 1.5e-05 24.6 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|347524027|ref|YP_004781597.1| - 2.1e-05 24.3 0.0 2.9e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.6 gi|347524027|ref|YP_004781597.1| - 6.8e-05 22.8 0.3 0.00013 21.8 0.3 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|347524027|ref|YP_004781597.1| - 0.00016 21.2 0.1 0.00038 20.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|347524027|ref|YP_004781597.1| - 0.0005 19.8 0.0 0.00095 18.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mga PF05043.13 gi|347524027|ref|YP_004781597.1| - 0.00067 20.2 0.0 0.0014 19.2 0.0 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|347524027|ref|YP_004781597.1| - 0.00086 19.1 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|347524027|ref|YP_004781597.1| - 0.0011 18.8 0.0 0.0019 18.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|347524027|ref|YP_004781597.1| - 0.0012 18.9 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.6 gi|347524027|ref|YP_004781597.1| - 0.0015 18.3 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|347524027|ref|YP_004781597.1| - 0.0024 17.8 0.1 0.0041 17.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|347524027|ref|YP_004781597.1| - 0.0027 17.9 0.0 0.0049 17.0 0.0 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|347524027|ref|YP_004781597.1| - 0.0093 16.4 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|347524027|ref|YP_004781597.1| - 0.01 15.7 0.1 0.04 13.8 0.1 1.9 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_41 PF14502.6 gi|347524027|ref|YP_004781597.1| - 0.015 15.0 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|347524027|ref|YP_004781597.1| - 0.018 15.1 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_6 PF01418.17 gi|347524027|ref|YP_004781597.1| - 0.04 13.9 0.1 0.24 11.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Penicillinase_R PF03965.16 gi|347524027|ref|YP_004781597.1| - 0.043 14.2 0.1 0.073 13.4 0.1 1.7 1 1 0 1 1 1 0 Penicillinase repressor HTH_10 PF04967.12 gi|347524027|ref|YP_004781597.1| - 0.044 13.6 0.3 0.32 10.8 0.1 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Dimerisation2 PF16864.5 gi|347524027|ref|YP_004781597.1| - 0.045 13.7 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain HTH_34 PF13601.6 gi|347524027|ref|YP_004781597.1| - 0.048 13.8 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|347524027|ref|YP_004781597.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 gi|347524027|ref|YP_004781597.1| - 0.075 13.0 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Radical_SAM PF04055.21 gi|347524028|ref|YP_004781598.1| - 7.4e-09 36.2 0.0 6.4e-08 33.2 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347524028|ref|YP_004781598.1| - 0.0069 16.7 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|347524029|ref|YP_004781599.1| - 7.8e-10 39.4 0.5 5.1e-09 36.7 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily RHH_1 PF01402.21 gi|347524030|ref|YP_004781600.1| - 6.2e-07 29.1 0.3 1.6e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-ZPR1 PF03367.13 gi|347524031|ref|YP_004781601.1| - 5.6e-32 110.8 0.0 6.9e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DiS_P_DiS PF06750.13 gi|347524031|ref|YP_004781601.1| - 0.0022 18.1 0.1 0.0064 16.6 0.1 1.7 2 0 0 2 2 2 1 Bacterial Peptidase A24 N-terminal domain Zn-ribbon_8 PF09723.10 gi|347524031|ref|YP_004781601.1| - 0.0038 17.3 0.4 2 8.6 0.2 2.7 2 0 0 2 2 2 2 Zinc ribbon domain Elf1 PF05129.13 gi|347524031|ref|YP_004781601.1| - 0.035 14.1 0.2 0.074 13.1 0.2 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like CxC4 PF18717.1 gi|347524031|ref|YP_004781601.1| - 0.16 11.8 0.4 0.26 11.1 0.4 1.3 1 0 0 1 1 1 0 CxC4 like cysteine cluster associated with KDZ transposases zf-ribbon_3 PF13248.6 gi|347524031|ref|YP_004781601.1| - 0.3 10.6 3.0 5.3 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|347524031|ref|YP_004781601.1| - 0.41 10.8 3.6 0.66 10.1 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|347524031|ref|YP_004781601.1| - 1.1 9.1 6.2 0.83 9.4 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|347524031|ref|YP_004781601.1| - 1.6 8.7 5.9 4.5 7.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain ArsA_HSP20 PF17886.1 gi|347524032|ref|YP_004781602.1| - 1.3e-13 50.2 0.2 2.2e-13 49.6 0.2 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|347524032|ref|YP_004781602.1| - 5.1e-11 42.6 4.0 3e-09 36.9 4.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|347524032|ref|YP_004781602.1| - 5.6e-06 27.3 1.4 8.6e-06 26.7 1.4 1.3 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|347524032|ref|YP_004781602.1| - 0.017 15.5 0.1 0.026 14.9 0.1 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain FKBP26_C PF18046.1 gi|347524032|ref|YP_004781602.1| - 0.018 15.1 2.3 0.025 14.6 1.4 1.9 1 1 0 1 1 1 0 FKBP26_C-terminal GvpH PF05455.11 gi|347524032|ref|YP_004781602.1| - 0.13 12.4 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 GvpH DAO PF01266.24 gi|347524033|ref|YP_004781603.1| - 1.4e-10 41.3 2.3 5.2e-06 26.3 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|347524033|ref|YP_004781603.1| - 7.4e-09 35.5 0.1 9.3e-05 21.9 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|347524033|ref|YP_004781603.1| - 5.7e-08 32.3 0.2 5.8e-07 28.9 0.3 2.4 2 1 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|347524033|ref|YP_004781603.1| - 1.1e-07 31.1 0.2 0.0039 16.1 0.0 2.7 3 0 0 3 3 3 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|347524033|ref|YP_004781603.1| - 1e-06 28.2 0.4 0.00078 18.8 0.0 2.8 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|347524033|ref|YP_004781603.1| - 1.1e-06 28.0 0.5 0.0059 15.7 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|347524033|ref|YP_004781603.1| - 6.2e-05 22.4 0.2 0.001 18.3 0.2 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|347524033|ref|YP_004781603.1| - 0.00017 21.8 0.2 0.00017 21.8 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|347524033|ref|YP_004781603.1| - 0.00035 19.4 0.2 0.026 13.2 0.3 2.3 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|347524033|ref|YP_004781603.1| - 0.0032 16.7 0.0 0.017 14.4 0.0 2.1 3 0 0 3 3 3 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|347524033|ref|YP_004781603.1| - 0.067 12.5 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|347524033|ref|YP_004781603.1| - 0.073 12.1 0.1 0.25 10.4 0.1 1.9 2 1 0 2 2 2 0 Lycopene cyclase protein CBS PF00571.28 gi|347524034|ref|YP_004781604.1| - 3e-12 46.8 6.6 0.0032 17.9 0.2 4.3 3 1 2 5 5 5 3 CBS domain zf-C2H2_4 PF13894.6 gi|347524035|ref|YP_004781605.1| - 0.012 16.4 1.4 0.15 13.0 1.4 2.1 1 1 0 1 1 1 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|347524035|ref|YP_004781605.1| - 0.019 15.4 0.1 0.04 14.4 0.1 1.5 1 1 0 1 1 1 0 Zinc finger, C2H2 type PfkB PF00294.24 gi|347524036|ref|YP_004781606.1| - 0.0011 18.3 0.0 0.077 12.3 0.0 2.0 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Flagellar_rod PF05149.12 gi|347524037|ref|YP_004781607.1| - 0.086 12.3 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Paraflagellar rod protein SHMT PF00464.19 gi|347524039|ref|YP_004781609.1| - 3.8e-62 210.2 0.0 4.8e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|347524039|ref|YP_004781609.1| - 4.8e-07 29.4 0.1 1.4e-06 27.9 0.1 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|347524039|ref|YP_004781609.1| - 8.7e-05 21.6 0.0 0.00021 20.4 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|347524039|ref|YP_004781609.1| - 0.0004 19.7 0.0 0.00066 19.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|347524039|ref|YP_004781609.1| - 0.0051 15.4 0.0 0.0072 14.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|347524039|ref|YP_004781609.1| - 0.0097 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|347524039|ref|YP_004781609.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.3 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase MoCF_biosynth PF00994.24 gi|347524040|ref|YP_004781610.1| - 5.9e-35 120.0 0.0 1.2e-34 119.0 0.0 1.5 2 0 0 2 2 2 1 Probable molybdopterin binding domain DUF2007 PF09413.10 gi|347524040|ref|YP_004781610.1| - 0.087 13.0 0.1 16 5.7 0.0 2.7 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein FeS_assembly_P PF01883.19 gi|347524041|ref|YP_004781611.1| - 2e-23 82.4 1.4 3e-23 81.8 1.1 1.4 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|347524041|ref|YP_004781611.1| - 0.0013 18.8 0.1 0.011 15.8 0.0 2.1 2 0 0 2 2 2 1 NifU-like domain CCB1 PF12046.8 gi|347524041|ref|YP_004781611.1| - 0.14 11.5 0.0 0.19 11.0 0.0 1.1 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B tRNA-synt_2b PF00587.25 gi|347524046|ref|YP_004781616.1| - 1.1e-41 142.7 0.0 3.6e-41 141.1 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|347524046|ref|YP_004781616.1| - 6e-21 74.7 10.0 6e-21 74.7 8.3 1.9 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain PCRF PF03462.18 gi|347524046|ref|YP_004781616.1| - 0.04 13.8 0.7 0.1 12.5 0.7 1.6 1 0 0 1 1 1 0 PCRF domain CdiI_2 PF18593.1 gi|347524046|ref|YP_004781616.1| - 0.081 13.6 0.3 0.31 11.7 0.3 2.0 1 1 0 1 1 1 0 CdiI immunity protein LAL_C2 PF18603.1 gi|347524046|ref|YP_004781616.1| - 0.11 12.7 0.1 0.33 11.2 0.1 1.8 1 0 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 ALS2CR8 PF15299.6 gi|347524046|ref|YP_004781616.1| - 0.25 11.2 1.8 0.41 10.5 0.8 1.8 2 0 0 2 2 2 0 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 tRNA-synt_His PF13393.6 gi|347524046|ref|YP_004781616.1| - 0.36 10.0 2.3 9.8 5.3 1.0 2.3 2 0 0 2 2 2 0 Histidyl-tRNA synthetase FapA PF03961.13 gi|347524046|ref|YP_004781616.1| - 1.1 7.7 3.8 1.9 7.0 3.8 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A MADF_DNA_bdg PF10545.9 gi|347524046|ref|YP_004781616.1| - 4.6 7.6 6.9 1.7 9.0 3.8 1.9 2 0 0 2 2 2 0 Alcohol dehydrogenase transcription factor Myb/SANT-like DUF4670 PF15709.5 gi|347524046|ref|YP_004781616.1| - 5.7 6.1 12.7 8.1 5.6 12.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4670) APG6_N PF17675.1 gi|347524046|ref|YP_004781616.1| - 8.5 6.9 12.6 27 5.3 12.6 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region TatD_DNase PF01026.21 gi|347524047|ref|YP_004781617.1| - 9.7e-22 77.6 0.0 1.2e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase VWA_CoxE PF05762.14 gi|347524048|ref|YP_004781618.1| - 1.4e-07 31.1 1.2 1.9e-07 30.7 0.0 1.8 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|347524048|ref|YP_004781618.1| - 5.7e-07 29.6 0.0 2.9e-05 24.1 0.0 2.4 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|347524048|ref|YP_004781618.1| - 6e-07 30.1 0.2 6.3e-06 26.8 0.0 2.6 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA PF00092.28 gi|347524048|ref|YP_004781618.1| - 7.6e-07 29.5 0.1 2.6e-06 27.8 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain BAT PF15915.5 gi|347524048|ref|YP_004781618.1| - 0.049 13.5 2.0 1.1 9.1 0.1 2.4 2 0 0 2 2 2 0 GAF and HTH_10 associated domain SH3_18 PF18354.1 gi|347524048|ref|YP_004781618.1| - 0.054 13.5 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 CarS bacterial SH3 domain EDR1 PF14381.6 gi|347524048|ref|YP_004781618.1| - 0.12 12.1 0.1 0.25 11.1 0.1 1.5 1 1 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 AAA_5 PF07728.14 gi|347524049|ref|YP_004781619.1| - 2.1e-28 99.0 0.0 9.4e-28 96.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|347524049|ref|YP_004781619.1| - 2.5e-08 33.8 0.0 4.2e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_8 PF17868.1 gi|347524049|ref|YP_004781619.1| - 6.5e-08 32.3 0.1 1.7e-07 31.0 0.1 1.7 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|347524049|ref|YP_004781619.1| - 1.7e-06 28.5 0.0 8.1e-06 26.3 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|347524049|ref|YP_004781619.1| - 5.7e-06 25.9 0.1 8.9e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|347524049|ref|YP_004781619.1| - 6.8e-06 26.6 0.1 1.8e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|347524049|ref|YP_004781619.1| - 0.00094 19.5 0.0 0.0068 16.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|347524049|ref|YP_004781619.1| - 0.0013 18.5 0.0 0.0032 17.2 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|347524049|ref|YP_004781619.1| - 0.0055 15.8 0.0 0.012 14.8 0.0 1.7 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|347524049|ref|YP_004781619.1| - 0.0056 16.4 0.0 0.038 13.7 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|347524049|ref|YP_004781619.1| - 0.021 14.6 0.1 0.057 13.1 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|347524049|ref|YP_004781619.1| - 0.077 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region SpoIIM PF01944.17 gi|347524051|ref|YP_004781621.1| - 2.4e-25 89.4 20.7 3.2e-25 89.0 20.7 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M Radical_SAM PF04055.21 gi|347524052|ref|YP_004781622.1| - 7.5e-13 49.2 4.1 4.6e-12 46.6 0.1 2.7 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347524052|ref|YP_004781622.1| - 3.4e-07 30.6 0.0 6.7e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347524052|ref|YP_004781622.1| - 0.00046 20.3 0.0 0.0012 18.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HEPN PF05168.14 gi|347524052|ref|YP_004781622.1| - 0.097 12.8 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 HEPN domain DHO_dh PF01180.21 gi|347524053|ref|YP_004781623.1| - 1.7e-49 168.6 0.4 2e-49 168.4 0.4 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|347524053|ref|YP_004781623.1| - 6.5e-07 28.7 0.2 1.4e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) IMPDH PF00478.25 gi|347524053|ref|YP_004781623.1| - 0.0012 17.9 5.5 0.03 13.3 0.5 2.6 2 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|347524053|ref|YP_004781623.1| - 0.12 11.8 3.4 0.35 10.3 0.1 3.0 3 1 1 4 4 4 0 Histidine biosynthesis protein EIIBC-GUT_C PF07663.11 gi|347524053|ref|YP_004781623.1| - 0.31 11.2 5.5 3.2 8.0 0.0 3.5 2 1 1 4 4 4 0 Sorbitol phosphotransferase enzyme II C-terminus NMO PF03060.15 gi|347524053|ref|YP_004781623.1| - 2 7.7 8.4 0.21 10.9 2.9 1.9 2 1 0 2 2 2 0 Nitronate monooxygenase Amidohydro_1 PF01979.20 gi|347524054|ref|YP_004781624.1| - 5.6e-24 85.1 0.0 7.1e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|347524054|ref|YP_004781624.1| - 7.5e-08 32.3 0.1 0.00015 21.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family DHODB_Fe-S_bind PF10418.9 gi|347524055|ref|YP_004781625.1| - 2.7e-09 36.7 4.2 3.3e-09 36.4 1.1 2.2 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|347524055|ref|YP_004781625.1| - 0.06 14.0 0.1 0.12 13.1 0.1 1.5 1 1 0 1 1 1 0 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|347524055|ref|YP_004781625.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain PyrI PF01948.18 gi|347524056|ref|YP_004781626.1| - 1.4e-33 115.0 0.6 1.9e-33 114.6 0.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|347524056|ref|YP_004781626.1| - 1.5e-17 63.3 0.8 2.4e-17 62.6 0.8 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|347524057|ref|YP_004781627.1| - 9.6e-47 158.7 0.0 1.7e-46 158.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|347524057|ref|YP_004781627.1| - 9.8e-19 68.0 0.0 1.4e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OMPdecase PF00215.24 gi|347524058|ref|YP_004781628.1| - 8.5e-21 74.6 0.0 1.1e-20 74.3 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family CutA1 PF03091.15 gi|347524059|ref|YP_004781629.1| - 2.5e-33 113.9 0.2 3.1e-33 113.6 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF4227 PF14004.6 gi|347524059|ref|YP_004781629.1| - 0.089 12.8 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4227) RsgI_N PF12791.7 gi|347524062|ref|YP_004781632.1| - 0.027 14.4 0.0 0.071 13.0 0.0 1.6 2 0 0 2 2 2 0 Anti-sigma factor N-terminus HTH_Crp_2 PF13545.6 gi|347524063|ref|YP_004781633.1| - 0.0078 16.2 0.2 0.046 13.7 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|347524063|ref|YP_004781633.1| - 0.018 14.9 0.0 0.53 10.2 0.0 2.5 2 1 0 2 2 2 0 MarR family Mrr_N PF14338.6 gi|347524063|ref|YP_004781633.1| - 0.029 14.5 2.3 0.92 9.7 0.0 3.0 3 1 0 3 3 3 0 Mrr N-terminal domain AAA_assoc_C PF09821.9 gi|347524063|ref|YP_004781633.1| - 0.035 14.6 0.0 0.95 10.0 0.0 3.0 2 1 1 3 3 3 0 C-terminal AAA-associated domain DUF4065 PF13274.6 gi|347524063|ref|YP_004781633.1| - 0.065 14.1 0.1 0.47 11.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4065) HTH_23 PF13384.6 gi|347524063|ref|YP_004781633.1| - 0.073 12.9 0.1 0.42 10.5 0.1 2.3 2 0 0 2 2 2 0 Homeodomain-like domain OTCace PF00185.24 gi|347524064|ref|YP_004781634.1| - 3.7e-59 199.3 0.0 5.1e-59 198.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|347524064|ref|YP_004781634.1| - 1.2e-46 158.4 0.0 1.8e-46 157.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SpoU_sub_bind PF08032.12 gi|347524065|ref|YP_004781635.1| - 0.025 14.9 0.1 0.037 14.3 0.1 1.3 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding CoA_binding_2 PF13380.6 gi|347524065|ref|YP_004781635.1| - 0.082 13.4 0.0 0.11 13.1 0.0 1.3 1 0 0 1 1 1 0 CoA binding domain RNA_pol_inhib PF16857.5 gi|347524065|ref|YP_004781635.1| - 0.14 12.0 2.2 1.5 8.6 0.1 2.6 2 0 0 2 2 2 0 RNA polymerase inhibitor LAB_N PF07578.11 gi|347524066|ref|YP_004781636.1| - 0.00047 20.2 0.3 0.00086 19.3 0.3 1.4 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain MtN3_slv PF03083.16 gi|347524066|ref|YP_004781636.1| - 0.041 13.9 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange STT3 PF02516.14 gi|347524067|ref|YP_004781637.1| - 3.9e-14 52.4 34.1 9.5e-14 51.2 34.1 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF4287 PF14117.6 gi|347524071|ref|YP_004781641.1| - 0.038 14.1 0.0 0.14 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) Trigger_C PF05698.14 gi|347524071|ref|YP_004781641.1| - 0.07 13.1 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus AbiEi_4 PF13338.6 gi|347524072|ref|YP_004781642.1| - 0.088 13.0 0.4 0.19 11.9 0.4 1.6 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin RecR PF02132.15 gi|347524072|ref|YP_004781642.1| - 1.9 8.1 8.0 1.2 8.8 0.5 2.9 3 0 0 3 3 3 0 RecR protein CTP_transf_like PF01467.26 gi|347524073|ref|YP_004781643.1| - 2.2e-13 50.6 0.0 3.1e-13 50.1 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase-like ScdA_N PF04405.14 gi|347524073|ref|YP_004781643.1| - 0.0097 15.6 0.0 2.8 7.7 0.0 2.3 2 0 0 2 2 2 2 Domain of Unknown function (DUF542) NAD_kinase PF01513.21 gi|347524074|ref|YP_004781644.1| - 9.6e-43 146.4 0.1 1.1e-42 146.3 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|347524074|ref|YP_004781644.1| - 2.7e-06 27.0 0.5 1e-05 25.2 0.3 2.0 1 1 1 2 2 2 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.22 gi|347524074|ref|YP_004781644.1| - 0.034 14.1 0.0 0.091 12.7 0.0 1.8 2 0 0 2 2 2 0 DeoR C terminal sensor domain PqqD PF05402.12 gi|347524074|ref|YP_004781644.1| - 0.11 12.9 0.0 0.59 10.5 0.0 2.2 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Hydrolase PF00702.26 gi|347524075|ref|YP_004781645.1| - 0.15 12.4 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Phage_holin_3_1 PF05106.12 gi|347524075|ref|YP_004781645.1| - 4.2 7.9 7.3 1.8 9.1 2.9 2.3 2 0 0 2 2 2 0 Phage holin family (Lysis protein S) Rhomboid PF01694.22 gi|347524076|ref|YP_004781646.1| - 6.2e-36 123.7 16.0 6.2e-36 123.7 16.0 1.5 2 0 0 2 2 2 1 Rhomboid family UbiA PF01040.18 gi|347524077|ref|YP_004781647.1| - 4e-43 147.5 24.4 5.2e-43 147.2 24.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Radical_SAM PF04055.21 gi|347524078|ref|YP_004781648.1| - 3e-26 92.8 0.1 9.6e-26 91.1 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|347524078|ref|YP_004781648.1| - 3.4e-16 59.4 0.0 7.5e-16 58.2 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|347524078|ref|YP_004781648.1| - 3.7e-08 33.5 0.0 8.4e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|347524078|ref|YP_004781648.1| - 1.3e-05 25.5 0.0 2.8e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2024 PF09630.10 gi|347524078|ref|YP_004781648.1| - 0.19 11.6 0.1 0.38 10.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) Cys_rich_CPXG PF14255.6 gi|347524079|ref|YP_004781649.1| - 0.00063 19.6 0.2 0.00088 19.1 0.2 1.3 1 0 0 1 1 1 1 Cysteine-rich CPXCG Zn-ribbon_8 PF09723.10 gi|347524079|ref|YP_004781649.1| - 0.0015 18.6 0.7 2 8.6 0.0 2.2 2 0 0 2 2 2 2 Zinc ribbon domain TFIIS_C PF01096.18 gi|347524079|ref|YP_004781649.1| - 0.0022 17.8 2.8 0.2 11.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|347524079|ref|YP_004781649.1| - 0.0039 17.1 1.5 0.0065 16.4 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|347524079|ref|YP_004781649.1| - 0.022 14.4 1.6 4.2 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4579 PF15158.6 gi|347524079|ref|YP_004781649.1| - 0.024 14.4 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4579) zf-ribbon_3 PF13248.6 gi|347524079|ref|YP_004781649.1| - 0.063 12.7 0.4 5.3 6.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|347524079|ref|YP_004781649.1| - 0.072 12.6 2.5 1.1 8.8 2.5 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.6 gi|347524079|ref|YP_004781649.1| - 0.074 13.6 6.7 0.11 13.1 6.1 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn_ribbon_SprT PF17283.2 gi|347524079|ref|YP_004781649.1| - 0.11 12.5 3.5 1.3 9.0 0.4 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Lar_restr_allev PF14354.6 gi|347524079|ref|YP_004781649.1| - 0.11 12.9 0.9 0.14 12.5 0.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin PF00301.20 gi|347524079|ref|YP_004781649.1| - 0.36 10.9 3.2 7.1 6.7 1.0 2.2 2 0 0 2 2 2 0 Rubredoxin RNA_POL_M_15KD PF02150.16 gi|347524079|ref|YP_004781649.1| - 2.1 8.3 4.7 8.2 6.4 4.7 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit VIT1 PF01988.19 gi|347524080|ref|YP_004781650.1| - 1.3e-05 25.2 16.0 6.1e-05 23.0 3.6 2.1 1 1 1 2 2 2 2 VIT family PhosphMutase PF10143.9 gi|347524081|ref|YP_004781651.1| - 2.6e-51 173.9 0.0 3.7e-51 173.4 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|347524081|ref|YP_004781651.1| - 1.2e-24 87.0 0.0 1.5e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|347524081|ref|YP_004781651.1| - 9.3e-06 25.5 0.0 0.032 13.8 0.0 3.1 3 0 0 3 3 3 3 Type I phosphodiesterase / nucleotide pyrophosphatase UbiA PF01040.18 gi|347524082|ref|YP_004781652.1| - 1.3e-38 132.7 23.5 1.6e-38 132.4 23.5 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Deltameth_res PF16020.5 gi|347524082|ref|YP_004781652.1| - 8.2 6.4 6.1 37 4.3 0.7 3.3 1 1 2 3 3 3 0 Deltamethrin resistance UbiD PF01977.16 gi|347524083|ref|YP_004781653.1| - 1.3e-137 458.9 0.2 1.6e-137 458.7 0.2 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rrf2 PF02082.20 gi|347524083|ref|YP_004781653.1| - 0.04 14.3 0.2 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator Prok-JAB PF14464.6 gi|347524084|ref|YP_004781654.1| - 2e-05 24.3 0.0 3.8e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain Gln-synt_C PF00120.24 gi|347524085|ref|YP_004781655.1| - 2.7e-135 450.8 0.0 3.1e-135 450.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|347524085|ref|YP_004781655.1| - 3.1e-21 74.9 0.0 6.7e-21 73.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF711 PF05167.12 gi|347524086|ref|YP_004781656.1| - 3.7e-42 144.7 0.0 7e-42 143.8 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) YlzJ PF14035.6 gi|347524087|ref|YP_004781657.1| - 0.016 15.4 0.0 0.084 13.1 0.0 2.0 2 0 0 2 2 2 0 YlzJ-like protein SMC_N PF02463.19 gi|347524089|ref|YP_004781659.1| - 6.1e-19 68.3 14.2 2.5e-10 40.2 0.0 2.9 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|347524089|ref|YP_004781659.1| - 4.1e-15 56.4 18.6 8.7e-13 48.7 0.5 4.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|347524089|ref|YP_004781659.1| - 2.6e-14 54.2 39.4 2.6e-14 54.2 39.4 7.4 2 2 0 2 2 1 1 AAA domain Rad50_zn_hook PF04423.14 gi|347524089|ref|YP_004781659.1| - 3.4e-13 49.2 2.2 3.4e-13 49.2 2.2 7.0 6 1 0 6 6 5 1 Rad50 zinc hook motif AAA_21 PF13304.6 gi|347524089|ref|YP_004781659.1| - 7.1e-10 39.2 22.3 2.2e-05 24.4 0.1 4.2 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|347524089|ref|YP_004781659.1| - 1e-09 37.7 62.2 0.00027 19.8 13.6 4.7 2 1 3 5 5 5 3 AAA domain Baculo_PEP_C PF04513.12 gi|347524089|ref|YP_004781659.1| - 3.4e-08 33.6 21.4 0.0095 16.0 0.5 6.8 3 2 5 8 8 7 4 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 gi|347524089|ref|YP_004781659.1| - 4.3e-08 32.8 106.4 0.015 14.7 19.4 6.4 2 2 2 5 5 5 5 Growth-arrest specific micro-tubule binding AAA_29 PF13555.6 gi|347524089|ref|YP_004781659.1| - 7.4e-08 32.0 0.0 1.3e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NPV_P10 PF05531.12 gi|347524089|ref|YP_004781659.1| - 9.5e-08 32.4 21.2 0.61 10.6 0.4 9.1 3 2 4 8 8 8 1 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.27 gi|347524089|ref|YP_004781659.1| - 1.8e-07 31.7 12.5 0.0013 19.2 0.0 5.5 2 1 0 3 3 2 2 ABC transporter DUF1664 PF07889.12 gi|347524089|ref|YP_004781659.1| - 3.7e-06 27.0 60.8 0.022 14.8 0.5 9.0 3 2 6 9 9 9 3 Protein of unknown function (DUF1664) Golgin_A5 PF09787.9 gi|347524089|ref|YP_004781659.1| - 5.6e-06 26.0 94.2 0.00018 21.1 13.3 4.5 3 1 1 4 4 4 3 Golgin subfamily A member 5 AAA_27 PF13514.6 gi|347524089|ref|YP_004781659.1| - 1.9e-05 24.3 0.1 1.9e-05 24.3 0.1 5.6 4 2 3 8 8 8 1 AAA domain FlaC_arch PF05377.11 gi|347524089|ref|YP_004781659.1| - 2e-05 24.9 71.4 0.039 14.4 0.6 12.2 5 4 7 12 12 12 4 Flagella accessory protein C (FlaC) OmpH PF03938.14 gi|347524089|ref|YP_004781659.1| - 2.1e-05 24.9 79.4 0.077 13.3 8.8 6.3 2 2 4 6 6 6 4 Outer membrane protein (OmpH-like) SbcCD_C PF13558.6 gi|347524089|ref|YP_004781659.1| - 2.4e-05 24.5 0.0 6.5e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Spc7 PF08317.11 gi|347524089|ref|YP_004781659.1| - 3.6e-05 22.8 100.7 0.2 10.5 14.3 5.7 1 1 8 9 9 9 7 Spc7 kinetochore protein FapA PF03961.13 gi|347524089|ref|YP_004781659.1| - 4.4e-05 22.3 84.6 0.24 10.0 6.4 6.8 1 1 6 7 7 7 5 Flagellar Assembly Protein A TPR_MLP1_2 PF07926.12 gi|347524089|ref|YP_004781659.1| - 0.0006 19.9 98.9 0.34 11.0 11.8 7.0 2 2 4 6 6 6 2 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|347524089|ref|YP_004781659.1| - 0.0011 19.2 77.3 0.11 12.8 6.1 10.0 2 2 6 10 10 10 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF5082 PF16888.5 gi|347524089|ref|YP_004781659.1| - 0.0012 19.2 7.2 0.0012 19.2 7.2 7.6 2 2 5 7 7 7 2 Domain of unknown function (DUF5082) DUF4618 PF15397.6 gi|347524089|ref|YP_004781659.1| - 0.0034 16.8 2.3 0.0034 16.8 2.3 5.4 2 2 2 4 4 3 1 Domain of unknown function (DUF4618) Laminin_II PF06009.12 gi|347524089|ref|YP_004781659.1| - 0.0057 16.7 60.5 0.0085 16.1 8.9 7.3 2 2 7 9 9 9 2 Laminin Domain II CENP-F_leu_zip PF10473.9 gi|347524089|ref|YP_004781659.1| - 0.0057 16.7 120.4 0.25 11.4 6.6 7.4 2 2 4 6 6 6 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HSBP1 PF06825.12 gi|347524089|ref|YP_004781659.1| - 0.0071 16.2 0.3 0.0071 16.2 0.3 6.1 7 0 0 7 7 5 1 Heat shock factor binding protein 1 DUF3584 PF12128.8 gi|347524089|ref|YP_004781659.1| - 0.0072 13.9 84.8 0.11 10.1 36.4 4.2 2 1 2 4 4 4 2 Protein of unknown function (DUF3584) Uds1 PF15456.6 gi|347524089|ref|YP_004781659.1| - 0.01 16.0 12.5 0.01 16.0 12.5 6.5 2 2 5 7 7 4 0 Up-regulated During Septation AAA_33 PF13671.6 gi|347524089|ref|YP_004781659.1| - 0.012 15.8 0.2 5.4 7.2 0.0 3.9 3 1 0 3 3 2 0 AAA domain FadA PF09403.10 gi|347524089|ref|YP_004781659.1| - 0.012 16.1 7.9 0.012 16.1 7.9 8.1 3 2 5 8 8 7 0 Adhesion protein FadA APG6_N PF17675.1 gi|347524089|ref|YP_004781659.1| - 0.014 15.9 125.2 0.49 10.9 17.2 8.1 2 2 5 7 7 5 0 Apg6 coiled-coil region MMR_HSR1 PF01926.23 gi|347524089|ref|YP_004781659.1| - 0.034 14.2 0.0 0.42 10.7 0.0 3.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF4407 PF14362.6 gi|347524089|ref|YP_004781659.1| - 0.053 12.9 54.4 1.4 8.2 9.7 5.1 1 1 3 4 4 3 0 Domain of unknown function (DUF4407) RsgA_GTPase PF03193.16 gi|347524089|ref|YP_004781659.1| - 0.064 13.2 0.2 0.59 10.0 0.0 2.7 2 0 0 2 2 1 0 RsgA GTPase Mce4_CUP1 PF11887.8 gi|347524089|ref|YP_004781659.1| - 0.13 11.7 3.6 4.7 6.6 0.1 3.4 3 1 0 3 3 2 0 Cholesterol uptake porter CUP1 of Mce4, putative FliD_N PF02465.18 gi|347524089|ref|YP_004781659.1| - 0.17 12.6 28.6 4 8.2 1.5 8.1 5 2 2 7 7 7 0 Flagellar hook-associated protein 2 N-terminus DUF3450 PF11932.8 gi|347524089|ref|YP_004781659.1| - 0.2 10.9 86.4 0.51 9.6 1.7 9.3 3 2 7 10 10 9 0 Protein of unknown function (DUF3450) BCL9 PF11502.8 gi|347524089|ref|YP_004781659.1| - 0.35 10.7 3.9 1.6 8.6 3.9 2.2 1 0 0 1 1 1 0 B-cell lymphoma 9 protein Occludin_ELL PF07303.13 gi|347524089|ref|YP_004781659.1| - 0.4 11.4 72.3 0.067 13.9 10.1 8.7 2 2 8 10 10 10 0 Occludin homology domain Sec34 PF04136.15 gi|347524089|ref|YP_004781659.1| - 0.47 10.3 49.2 0.69 9.8 3.6 7.1 2 2 3 7 7 7 0 Sec34-like family MukB PF04310.12 gi|347524089|ref|YP_004781659.1| - 0.58 9.9 0.0 0.58 9.9 0.0 5.1 3 2 1 4 4 4 0 MukB N-terminal Osmo_CC PF08946.10 gi|347524089|ref|YP_004781659.1| - 0.64 10.3 0.0 0.64 10.3 0.0 11.2 10 4 3 13 13 8 0 Osmosensory transporter coiled coil UPF0242 PF06785.11 gi|347524089|ref|YP_004781659.1| - 0.97 9.5 98.1 1.1 9.3 15.0 5.7 2 2 0 3 3 2 0 Uncharacterised protein family (UPF0242) N-terminus Serine_rich PF08824.10 gi|347524089|ref|YP_004781659.1| - 1.3 9.0 36.6 9.7 6.2 3.9 6.5 3 2 1 5 5 5 0 Serine rich protein interaction domain EzrA PF06160.12 gi|347524089|ref|YP_004781659.1| - 1.6 6.8 91.2 0.23 9.6 22.1 5.3 1 1 0 3 3 3 0 Septation ring formation regulator, EzrA DUF948 PF06103.11 gi|347524089|ref|YP_004781659.1| - 1.8 8.9 20.3 30 5.0 0.5 8.0 3 2 4 7 7 7 0 Bacterial protein of unknown function (DUF948) HemX PF04375.14 gi|347524089|ref|YP_004781659.1| - 2.1 7.5 48.3 0.53 9.5 0.5 6.7 2 2 5 7 7 7 0 HemX, putative uroporphyrinogen-III C-methyltransferase DHR10 PF18595.1 gi|347524089|ref|YP_004781659.1| - 2.2 8.4 115.1 1.5 8.9 13.3 8.0 2 2 6 8 8 8 0 Designed helical repeat protein 10 domain APG17 PF04108.12 gi|347524089|ref|YP_004781659.1| - 2.9 6.9 69.6 0.64 9.1 3.4 5.5 1 1 4 5 5 5 0 Autophagy protein Apg17 Fib_alpha PF08702.10 gi|347524089|ref|YP_004781659.1| - 2.9 8.1 66.0 0.85 9.8 9.4 6.9 1 1 3 7 7 7 0 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.15 gi|347524089|ref|YP_004781659.1| - 3.4 7.2 70.2 8.8 5.8 13.4 4.6 1 1 3 4 4 4 0 Exonuclease VII, large subunit T3SSipB PF16535.5 gi|347524089|ref|YP_004781659.1| - 3.5 8.1 24.2 1.3 9.5 1.7 4.7 2 2 1 4 4 4 0 Type III cell invasion protein SipB Flagellin_C PF00700.21 gi|347524089|ref|YP_004781659.1| - 3.7 8.0 6.4 5.6 7.4 0.2 3.9 3 1 0 3 3 2 0 Bacterial flagellin C-terminal helical region Fez1 PF06818.15 gi|347524089|ref|YP_004781659.1| - 4.5 7.7 90.3 1.9e+02 2.4 33.6 5.1 1 1 1 3 3 2 0 Fez1 DUF1409 PF07197.12 gi|347524089|ref|YP_004781659.1| - 6.6 6.7 7.0 2.3 8.1 0.3 4.0 3 1 1 4 4 2 0 Protein of unknown function (DUF1409) DASH_Dam1 PF08653.10 gi|347524089|ref|YP_004781659.1| - 7.1 6.5 20.2 76 3.2 0.1 8.4 6 3 3 10 10 7 0 DASH complex subunit Dam1 Rogdi_lz PF10259.9 gi|347524089|ref|YP_004781659.1| - 8.3 5.8 12.6 0.087 12.3 0.4 3.2 2 2 2 4 4 4 0 Rogdi leucine zipper containing protein IFT57 PF10498.9 gi|347524089|ref|YP_004781659.1| - 8.4 5.3 75.4 1.8 7.5 12.6 5.5 2 2 2 5 5 5 0 Intra-flagellar transport protein 57 HMMR_N PF15905.5 gi|347524089|ref|YP_004781659.1| - 9.7 5.6 99.4 0.35 10.3 23.0 4.9 2 2 2 5 5 5 0 Hyaluronan mediated motility receptor N-terminal Metallophos_2 PF12850.7 gi|347524090|ref|YP_004781660.1| - 4.6e-16 59.4 0.0 9e-16 58.5 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|347524090|ref|YP_004781660.1| - 1.2e-12 48.8 0.0 2.5e-12 47.8 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF87 PF01935.17 gi|347524091|ref|YP_004781661.1| - 8.5e-45 153.6 0.0 1.3e-44 153.0 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|347524091|ref|YP_004781661.1| - 6e-11 41.6 0.0 6e-06 25.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|347524091|ref|YP_004781661.1| - 7.1e-05 22.9 0.1 0.00018 21.6 0.1 1.8 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|347524091|ref|YP_004781661.1| - 0.0002 20.4 0.0 0.00094 18.2 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|347524091|ref|YP_004781661.1| - 0.00062 18.8 0.0 0.062 12.2 0.0 2.4 2 1 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|347524091|ref|YP_004781661.1| - 0.0022 17.4 0.2 0.82 9.0 0.0 2.9 2 1 0 3 3 3 2 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|347524091|ref|YP_004781661.1| - 0.014 15.8 2.4 0.23 11.8 1.9 2.5 1 1 0 1 1 1 0 AAA ATPase domain DUF384 PF04064.13 gi|347524091|ref|YP_004781661.1| - 0.064 13.1 0.6 4.2 7.3 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF384) Phage_Gp23 PF10669.9 gi|347524091|ref|YP_004781661.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) THUMP PF02926.17 gi|347524092|ref|YP_004781662.1| - 7.1e-09 35.9 0.0 8.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 THUMP domain DUF488 PF04343.13 gi|347524093|ref|YP_004781663.1| - 9.3e-18 65.0 1.1 1.1e-15 58.3 1.1 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 ABC_tran PF00005.27 gi|347524094|ref|YP_004781664.1| - 7.4e-18 65.4 0.0 2.4e-17 63.7 0.0 1.9 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|347524094|ref|YP_004781664.1| - 3e-08 33.9 0.1 0.0032 17.3 0.0 2.7 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|347524094|ref|YP_004781664.1| - 5.5e-07 29.9 0.0 1e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Acetyltransf_1 PF00583.25 gi|347524094|ref|YP_004781664.1| - 7.2e-06 26.2 2.9 7.9e-06 26.1 0.2 2.6 3 1 0 3 3 2 1 Acetyltransferase (GNAT) family SMC_N PF02463.19 gi|347524094|ref|YP_004781664.1| - 3.1e-05 23.5 0.0 0.00017 21.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Acetyltransf_7 PF13508.7 gi|347524094|ref|YP_004781664.1| - 8.3e-05 22.9 0.1 0.00023 21.5 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FtsK_SpoIIIE PF01580.18 gi|347524094|ref|YP_004781664.1| - 0.00011 21.7 0.1 0.03 13.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family RsgA_GTPase PF03193.16 gi|347524094|ref|YP_004781664.1| - 0.00066 19.6 0.0 0.0042 17.0 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|347524094|ref|YP_004781664.1| - 0.00091 19.0 0.3 0.14 11.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|347524094|ref|YP_004781664.1| - 0.0015 18.2 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|347524094|ref|YP_004781664.1| - 0.0017 18.9 0.0 0.0026 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347524094|ref|YP_004781664.1| - 0.0031 17.9 0.2 0.021 15.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|347524094|ref|YP_004781664.1| - 0.0056 16.6 0.2 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 NACHT domain TniB PF05621.11 gi|347524094|ref|YP_004781664.1| - 0.0059 16.0 0.4 0.1 12.0 0.1 2.6 3 0 0 3 3 3 1 Bacterial TniB protein AAA_25 PF13481.6 gi|347524094|ref|YP_004781664.1| - 0.0071 15.9 0.0 0.28 10.7 0.0 2.7 2 0 0 2 2 2 1 AAA domain Acetyltransf_10 PF13673.7 gi|347524094|ref|YP_004781664.1| - 0.011 15.6 0.0 0.024 14.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MMR_HSR1 PF01926.23 gi|347524094|ref|YP_004781664.1| - 0.019 15.0 0.0 0.044 13.9 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|347524094|ref|YP_004781664.1| - 0.02 15.0 0.9 0.09 12.9 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|347524094|ref|YP_004781664.1| - 0.02 15.2 0.1 0.18 12.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|347524094|ref|YP_004781664.1| - 0.023 14.3 0.1 0.088 12.4 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GNAT_acetyltr_2 PF13718.6 gi|347524094|ref|YP_004781664.1| - 0.029 13.8 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 AAA_28 PF13521.6 gi|347524094|ref|YP_004781664.1| - 0.038 14.2 0.5 0.16 12.2 0.2 2.2 2 0 0 2 2 2 0 AAA domain Acetyltransf_CG PF14542.6 gi|347524094|ref|YP_004781664.1| - 0.045 13.9 0.4 0.17 12.0 0.1 2.1 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase AAA_15 PF13175.6 gi|347524094|ref|YP_004781664.1| - 0.08 12.6 0.0 0.4 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|347524094|ref|YP_004781664.1| - 0.088 13.2 1.3 0.75 10.2 1.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Acetyltransf_5 PF13444.6 gi|347524094|ref|YP_004781664.1| - 0.088 13.5 0.1 0.27 12.0 0.1 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain ATPase_2 PF01637.18 gi|347524094|ref|YP_004781664.1| - 0.097 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|347524094|ref|YP_004781664.1| - 0.16 11.1 0.0 0.35 10.0 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|347524094|ref|YP_004781664.1| - 0.18 11.8 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF3584 PF12128.8 gi|347524094|ref|YP_004781664.1| - 0.2 9.2 0.1 0.28 8.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Radical_SAM PF04055.21 gi|347524095|ref|YP_004781665.1| - 1.9e-06 28.4 0.3 7.6e-05 23.1 0.0 2.7 2 1 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|347524095|ref|YP_004781665.1| - 0.12 12.1 3.2 8.8 6.0 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1848) LysE PF01810.18 gi|347524096|ref|YP_004781666.1| - 1.1e-16 60.9 15.3 1.3e-16 60.6 15.3 1.1 1 0 0 1 1 1 1 LysE type translocator tRNA-synt_1e PF01406.19 gi|347524097|ref|YP_004781667.1| - 5.4e-130 433.1 0.0 7.4e-130 432.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|347524097|ref|YP_004781667.1| - 2.5e-21 75.9 0.5 7e-13 48.1 0.4 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|347524097|ref|YP_004781667.1| - 2.5e-09 37.5 1.1 4.9e-09 36.5 0.5 1.8 2 0 0 2 2 2 1 DALR domain tRNA-synt_1 PF00133.22 gi|347524097|ref|YP_004781667.1| - 2.9e-08 32.4 0.0 2e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|347524097|ref|YP_004781667.1| - 9.4e-05 21.5 0.3 0.0035 16.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|347524097|ref|YP_004781667.1| - 0.0044 16.0 0.3 0.023 13.6 0.3 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain Speriolin_C PF15059.6 gi|347524097|ref|YP_004781667.1| - 0.1 12.7 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 Speriolin C-terminus Methyltransf_25 PF13649.6 gi|347524098|ref|YP_004781668.1| - 1.6e-08 35.1 0.0 3.4e-08 34.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347524098|ref|YP_004781668.1| - 2.2e-05 25.0 0.0 3.8e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|347524098|ref|YP_004781668.1| - 0.00021 20.7 0.0 0.00028 20.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|347524098|ref|YP_004781668.1| - 0.0006 19.6 0.0 0.0017 18.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|347524098|ref|YP_004781668.1| - 0.00062 19.8 0.0 0.00073 19.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|347524098|ref|YP_004781668.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|347524098|ref|YP_004781668.1| - 0.0016 18.0 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.7 gi|347524098|ref|YP_004781668.1| - 0.0036 17.2 0.0 0.0055 16.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347524098|ref|YP_004781668.1| - 0.0098 16.6 0.0 0.019 15.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|347524098|ref|YP_004781668.1| - 0.0099 15.7 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|347524098|ref|YP_004781668.1| - 0.011 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|347524098|ref|YP_004781668.1| - 0.018 14.7 0.0 0.023 14.3 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DOT1 PF08123.13 gi|347524098|ref|YP_004781668.1| - 0.035 13.6 0.0 0.051 13.1 0.0 1.4 1 1 0 1 1 1 0 Histone methylation protein DOT1 DUF917 PF06032.12 gi|347524098|ref|YP_004781668.1| - 0.038 12.8 0.0 0.048 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF917) UPF0020 PF01170.18 gi|347524098|ref|YP_004781668.1| - 0.076 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_8 PF05148.15 gi|347524098|ref|YP_004781668.1| - 0.087 12.7 0.0 0.15 11.9 0.0 1.3 1 1 0 1 1 1 0 Hypothetical methyltransferase AAA_33 PF13671.6 gi|347524098|ref|YP_004781668.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain PrmA PF06325.13 gi|347524098|ref|YP_004781668.1| - 0.11 11.9 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|347524098|ref|YP_004781668.1| - 0.14 13.2 0.0 0.17 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF131 PF01998.17 gi|347524099|ref|YP_004781669.1| - 4.3e-15 55.1 5.7 4.3e-15 55.1 5.7 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 Claudin_3 PF06653.11 gi|347524099|ref|YP_004781669.1| - 0.0099 15.8 1.8 0.011 15.7 1.8 1.1 1 0 0 1 1 1 1 Tight junction protein, Claudin-like DUF2615 PF11027.8 gi|347524099|ref|YP_004781669.1| - 0.27 11.4 0.4 6.9 6.9 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2615) DUF2207 PF09972.9 gi|347524099|ref|YP_004781669.1| - 0.47 9.2 6.0 0.62 8.8 6.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TMEM171 PF15471.6 gi|347524099|ref|YP_004781669.1| - 3 6.7 4.1 1.4 7.8 2.5 1.4 1 1 0 1 1 1 0 Transmembrane protein family 171 DUF2070 PF09843.9 gi|347524102|ref|YP_004781672.1| - 3e-48 164.5 0.0 3.7e-48 164.2 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) TBPIP PF07106.13 gi|347524103|ref|YP_004781673.1| - 0.026 14.4 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HxlR PF01638.17 gi|347524104|ref|YP_004781674.1| - 0.038 13.8 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix SAMP PF05924.11 gi|347524104|ref|YP_004781674.1| - 0.099 12.0 0.5 0.17 11.2 0.5 1.4 1 0 0 1 1 1 0 SAMP Motif Thioredoxin_15 PF18403.1 gi|347524106|ref|YP_004781676.1| - 0.049 13.6 0.0 2.5 8.0 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like domain F-box PF00646.33 gi|347524108|ref|YP_004781678.1| - 0.15 12.0 0.9 1.9 8.5 0.2 2.4 2 0 0 2 2 2 0 F-box domain zf-B_box PF00643.24 gi|347524110|ref|YP_004781680.1| - 0.0007 19.7 28.3 0.029 14.5 3.5 3.8 2 1 2 4 4 4 3 B-box zinc finger zf-piccolo PF05715.13 gi|347524110|ref|YP_004781680.1| - 0.8 9.9 30.3 0.26 11.5 2.1 4.0 1 1 2 3 3 3 0 Piccolo Zn-finger Prok-RING_4 PF14447.6 gi|347524110|ref|YP_004781680.1| - 4.7 7.2 27.1 0.42 10.5 5.2 3.3 1 1 3 4 4 4 0 Prokaryotic RING finger family 4 Radical_SAM PF04055.21 gi|347524111|ref|YP_004781681.1| - 4.6e-16 59.6 0.1 1.3e-15 58.2 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|347524111|ref|YP_004781681.1| - 1.8e-09 37.7 0.4 0.0026 17.5 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) PIN_9 PF18477.1 gi|347524112|ref|YP_004781682.1| - 1.2e-17 64.3 0.0 1.3e-17 64.1 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|347524112|ref|YP_004781682.1| - 0.031 14.0 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_5 PF08745.11 gi|347524112|ref|YP_004781682.1| - 0.033 13.6 0.0 0.96 8.8 0.0 2.1 1 1 1 2 2 2 0 PINc domain ribonuclease HTH_3 PF01381.22 gi|347524113|ref|YP_004781683.1| - 1.2e-10 41.3 0.0 2.8e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|347524113|ref|YP_004781683.1| - 9.2e-09 35.5 0.1 5.1e-08 33.1 0.1 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|347524113|ref|YP_004781683.1| - 2.2e-06 27.6 0.0 4.5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|347524113|ref|YP_004781683.1| - 0.00018 21.2 0.1 0.3 10.9 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|347524113|ref|YP_004781683.1| - 0.016 14.9 0.1 0.68 9.7 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|347524113|ref|YP_004781683.1| - 0.076 12.8 0.1 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Ribosomal_S26e PF01283.19 gi|347524114|ref|YP_004781684.1| - 8.7e-26 90.5 4.7 1e-25 90.2 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|347524114|ref|YP_004781684.1| - 8.7e-05 22.6 0.3 0.0017 18.5 0.2 2.3 2 0 0 2 2 2 1 C4-type zinc ribbon domain Auto_anti-p27 PF06677.12 gi|347524114|ref|YP_004781684.1| - 0.048 13.8 6.5 0.4 10.9 0.6 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CxxCxxCC PF03692.15 gi|347524115|ref|YP_004781685.1| - 2.9e-10 40.7 0.1 4.4e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Acetyltransf_11 PF13720.6 gi|347524115|ref|YP_004781685.1| - 0.13 12.7 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABC_tran PF00005.27 gi|347524116|ref|YP_004781686.1| - 7.4e-28 97.8 0.0 1e-27 97.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|347524116|ref|YP_004781686.1| - 3e-19 69.3 0.6 5.6e-19 68.4 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|347524116|ref|YP_004781686.1| - 1.5e-06 27.9 0.3 2.7e-05 23.7 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|347524116|ref|YP_004781686.1| - 0.00029 20.8 0.2 0.055 13.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 gi|347524116|ref|YP_004781686.1| - 0.00045 19.7 0.2 0.0076 15.7 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein AAA_22 PF13401.6 gi|347524116|ref|YP_004781686.1| - 0.0035 17.6 0.1 0.6 10.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|347524116|ref|YP_004781686.1| - 0.0052 16.5 0.0 0.0095 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|347524116|ref|YP_004781686.1| - 0.017 14.7 0.2 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|347524116|ref|YP_004781686.1| - 0.019 14.7 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|347524116|ref|YP_004781686.1| - 0.072 13.5 0.2 0.11 12.9 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|347524116|ref|YP_004781686.1| - 0.11 12.4 0.2 4.9 7.0 0.1 2.6 2 1 1 3 3 3 0 NACHT domain T2SSE PF00437.20 gi|347524116|ref|YP_004781686.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.20 gi|347524116|ref|YP_004781686.1| - 0.12 12.3 0.0 0.55 10.1 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|347524116|ref|YP_004781686.1| - 0.21 11.3 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ADP_ribosyl_GH PF03747.14 gi|347524117|ref|YP_004781687.1| - 9.6e-47 160.1 0.1 1.2e-46 159.8 0.1 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Asparaginase_2 PF01112.18 gi|347524118|ref|YP_004781688.1| - 2.6e-65 220.4 7.0 3.1e-65 220.2 7.0 1.0 1 0 0 1 1 1 1 Asparaginase DUF3989 PF13150.6 gi|347524119|ref|YP_004781689.1| - 0.034 13.9 0.1 0.07 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) Phage_holin_3_5 PF16085.5 gi|347524119|ref|YP_004781689.1| - 0.081 13.1 8.6 0.06 13.5 4.4 2.1 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III DUF2070 PF09843.9 gi|347524119|ref|YP_004781689.1| - 0.21 9.8 3.8 0.25 9.6 3.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) HMG-CoA_red PF00368.18 gi|347524120|ref|YP_004781690.1| - 7.2e-138 459.6 1.3 8.4e-138 459.4 1.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF89 PF01937.19 gi|347524121|ref|YP_004781691.1| - 4.2e-22 78.6 0.9 5.7e-22 78.2 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 Pyrophosphatase PF00719.19 gi|347524123|ref|YP_004781693.1| - 2.3e-57 193.3 0.0 2.7e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase DUF4342 PF14242.6 gi|347524124|ref|YP_004781694.1| - 5.4 7.1 5.6 2.7 8.1 1.2 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) Pcc1 PF09341.10 gi|347524125|ref|YP_004781695.1| - 6.2e-05 23.1 0.1 8.1e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF1949 PF09186.11 gi|347524125|ref|YP_004781695.1| - 0.076 12.9 0.8 7 6.6 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1949) HTH_3 PF01381.22 gi|347524126|ref|YP_004781696.1| - 4e-08 33.2 0.0 8.9e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|347524126|ref|YP_004781696.1| - 2e-05 24.8 0.1 5.7e-05 23.4 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|347524126|ref|YP_004781696.1| - 2.1e-05 24.0 0.2 8.1e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|347524126|ref|YP_004781696.1| - 0.0011 18.9 0.0 0.0025 17.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|347524126|ref|YP_004781696.1| - 0.0016 18.3 0.0 0.063 13.2 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|347524126|ref|YP_004781696.1| - 0.0018 18.3 0.5 0.0085 16.1 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|347524126|ref|YP_004781696.1| - 0.0023 17.8 0.2 0.01 15.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|347524126|ref|YP_004781696.1| - 0.003 17.3 0.0 0.0079 16.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|347524126|ref|YP_004781696.1| - 0.0091 15.8 0.1 0.35 10.7 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|347524126|ref|YP_004781696.1| - 0.024 14.3 0.7 0.76 9.5 0.1 2.8 2 1 0 2 2 2 0 Sigma-70, region 4 OmdA PF13376.6 gi|347524126|ref|YP_004781696.1| - 0.032 14.2 0.0 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated HTH_5 PF01022.20 gi|347524126|ref|YP_004781696.1| - 0.035 14.0 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LacI PF00356.21 gi|347524126|ref|YP_004781696.1| - 0.042 13.7 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_26 PF13443.6 gi|347524126|ref|YP_004781696.1| - 0.069 13.6 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain ABC1 PF03109.16 gi|347524126|ref|YP_004781696.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.4 2 0 0 2 2 1 0 ABC1 family TnsD PF15978.5 gi|347524126|ref|YP_004781696.1| - 0.099 11.6 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D KORA PF16509.5 gi|347524126|ref|YP_004781696.1| - 0.11 12.8 0.0 0.29 11.4 0.0 1.8 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor MgtE_N PF03448.17 gi|347524126|ref|YP_004781696.1| - 0.11 13.1 1.1 17 6.1 0.0 2.6 2 1 0 2 2 2 0 MgtE intracellular N domain HTH_IclR PF09339.10 gi|347524126|ref|YP_004781696.1| - 0.25 11.2 2.0 0.85 9.5 0.0 2.8 3 2 1 4 4 4 0 IclR helix-turn-helix domain ABC_tran PF00005.27 gi|347524127|ref|YP_004781697.1| - 1.3e-16 61.4 0.0 3.3e-16 60.1 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347524127|ref|YP_004781697.1| - 3.9e-16 59.7 1.1 6.1e-09 36.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347524127|ref|YP_004781697.1| - 3.4e-09 36.5 0.0 0.00069 19.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|347524127|ref|YP_004781697.1| - 2.2e-06 28.3 0.1 3.3e-06 27.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|347524127|ref|YP_004781697.1| - 0.0004 20.2 0.0 0.055 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|347524127|ref|YP_004781697.1| - 0.00077 19.2 0.2 0.0014 18.3 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|347524127|ref|YP_004781697.1| - 0.0016 18.6 0.0 0.0093 16.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|347524127|ref|YP_004781697.1| - 0.0036 16.9 0.0 0.0057 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|347524127|ref|YP_004781697.1| - 0.0049 16.8 0.2 0.012 15.6 0.1 1.6 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|347524127|ref|YP_004781697.1| - 0.0052 17.1 0.0 0.015 15.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347524127|ref|YP_004781697.1| - 0.013 15.9 0.1 0.025 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|347524127|ref|YP_004781697.1| - 0.016 15.2 0.1 0.92 9.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|347524127|ref|YP_004781697.1| - 0.021 14.6 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|347524127|ref|YP_004781697.1| - 0.042 14.3 0.0 0.11 12.9 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|347524127|ref|YP_004781697.1| - 0.086 12.7 0.0 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|347524127|ref|YP_004781697.1| - 0.12 12.7 0.4 0.41 10.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|347524127|ref|YP_004781697.1| - 0.12 12.0 0.2 0.21 11.2 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Sigma54_activ_2 PF14532.6 gi|347524127|ref|YP_004781697.1| - 0.13 12.3 0.0 0.6 10.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3584 PF12128.8 gi|347524127|ref|YP_004781697.1| - 0.14 9.6 0.1 0.19 9.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_14 PF13173.6 gi|347524127|ref|YP_004781697.1| - 0.22 11.6 0.0 2.6 8.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|347524127|ref|YP_004781697.1| - 0.24 10.8 0.2 0.4 10.0 0.2 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|347524127|ref|YP_004781697.1| - 0.24 10.4 0.1 0.35 9.9 0.1 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|347524127|ref|YP_004781697.1| - 0.26 10.4 0.3 1.2 8.2 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain ABC_ATPase PF09818.9 gi|347524127|ref|YP_004781697.1| - 0.26 10.0 0.3 0.46 9.2 0.2 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|347524127|ref|YP_004781697.1| - 0.3 9.7 0.1 0.42 9.2 0.1 1.1 1 0 0 1 1 1 0 AAA domain AFOR_C PF01314.18 gi|347524128|ref|YP_004781698.1| - 7.8e-89 298.3 0.0 9.6e-89 298.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|347524128|ref|YP_004781698.1| - 1.2e-62 211.3 0.3 1.8e-62 210.7 0.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HTH_45 PF14947.6 gi|347524130|ref|YP_004781700.1| - 4.7e-06 26.5 0.2 1.2e-05 25.2 0.2 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix Rio2_N PF09202.11 gi|347524130|ref|YP_004781700.1| - 0.0042 17.3 0.1 0.048 13.9 0.0 2.1 2 0 0 2 2 2 1 Rio2, N-terminal HTH_27 PF13463.6 gi|347524130|ref|YP_004781700.1| - 0.015 15.8 0.2 0.049 14.1 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|347524130|ref|YP_004781700.1| - 0.037 13.9 0.0 0.081 12.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|347524130|ref|YP_004781700.1| - 0.063 13.3 0.1 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|347524130|ref|YP_004781700.1| - 0.076 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|347524130|ref|YP_004781700.1| - 0.17 11.7 1.2 1.8 8.5 0.0 2.8 3 0 0 3 3 3 0 IclR helix-turn-helix domain PPS_PS PF02006.16 gi|347524131|ref|YP_004781701.1| - 4.7e-66 221.7 0.2 5.8e-66 221.4 0.2 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF2650 PF10853.8 gi|347524131|ref|YP_004781701.1| - 0.031 14.0 0.2 0.052 13.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2650) DNA_processg_A PF02481.15 gi|347524131|ref|YP_004781701.1| - 0.071 12.3 0.0 0.23 10.7 0.0 1.8 2 0 0 2 2 2 0 DNA recombination-mediator protein A RHH_1 PF01402.21 gi|347524132|ref|YP_004781702.1| - 3.7e-12 45.7 0.2 4.8e-12 45.4 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|347524132|ref|YP_004781702.1| - 0.00063 19.9 0.0 0.00064 19.9 0.0 1.2 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|347524132|ref|YP_004781702.1| - 0.0014 18.5 0.1 0.0019 18.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB ParD_antitoxin PF03693.14 gi|347524132|ref|YP_004781702.1| - 0.0023 18.3 0.0 0.0026 18.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ATPase PF06745.13 gi|347524133|ref|YP_004781703.1| - 4.6e-88 294.4 0.0 5.3e-88 294.3 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|347524133|ref|YP_004781703.1| - 4.8e-06 25.5 1.2 0.001 17.8 0.1 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_25 PF13481.6 gi|347524133|ref|YP_004781703.1| - 1.3e-05 24.9 0.0 3e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|347524133|ref|YP_004781703.1| - 0.0017 17.6 0.2 0.0042 16.4 0.0 1.6 2 0 0 2 2 2 1 Rad51 T2SSE PF00437.20 gi|347524133|ref|YP_004781703.1| - 0.0064 15.6 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF2075 PF09848.9 gi|347524133|ref|YP_004781703.1| - 0.019 14.2 0.0 0.025 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RecA PF00154.21 gi|347524133|ref|YP_004781703.1| - 0.023 14.2 0.3 2.7 7.4 0.0 2.8 3 0 0 3 3 3 0 recA bacterial DNA recombination protein AAA_19 PF13245.6 gi|347524133|ref|YP_004781703.1| - 0.031 14.6 0.2 0.061 13.7 0.2 1.4 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|347524133|ref|YP_004781703.1| - 0.034 13.0 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase DnaB_C PF03796.15 gi|347524133|ref|YP_004781703.1| - 0.13 11.6 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DNA_binding_1 PF01035.20 gi|347524134|ref|YP_004781704.1| - 2.5e-24 85.2 0.0 4.6e-24 84.3 0.0 1.4 2 0 0 2 2 2 1 6-O-methylguanine DNA methyltransferase, DNA binding domain SMP_LBD PF17047.5 gi|347524134|ref|YP_004781704.1| - 0.035 13.6 0.0 0.047 13.1 0.0 1.1 1 0 0 1 1 1 0 Synaptotagmin-like mitochondrial-lipid-binding domain PALP PF00291.25 gi|347524135|ref|YP_004781705.1| - 1.5e-74 251.1 1.4 1.8e-74 250.8 1.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.12 gi|347524135|ref|YP_004781705.1| - 0.056 13.0 2.0 0.17 11.4 2.0 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding CBP PF12192.8 gi|347524135|ref|YP_004781705.1| - 0.062 13.5 0.1 9.8 6.5 0.0 3.1 2 1 1 3 3 3 0 Fungal calcium binding protein Zn-ribbon_8 PF09723.10 gi|347524135|ref|YP_004781705.1| - 0.11 12.6 0.7 5.6 7.2 0.0 2.3 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|347524135|ref|YP_004781705.1| - 0.17 11.9 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACP_syn_III_C PF08541.10 gi|347524135|ref|YP_004781705.1| - 0.18 12.0 0.8 0.58 10.4 0.1 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Desulfoferrod_N PF06397.12 gi|347524135|ref|YP_004781705.1| - 0.31 10.7 3.1 4 7.1 0.1 2.6 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain GCH_III PF05165.12 gi|347524136|ref|YP_004781706.1| - 2.8e-33 115.2 0.0 2.8e-31 108.6 0.0 2.0 1 1 0 1 1 1 1 GTP cyclohydrolase III IlvN PF07991.12 gi|347524137|ref|YP_004781707.1| - 1.3e-77 259.0 0.1 2.6e-77 258.1 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|347524137|ref|YP_004781707.1| - 1.9e-56 190.4 0.3 2.7e-56 189.9 0.3 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|347524137|ref|YP_004781707.1| - 1.6e-08 35.0 0.0 3.8e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|347524137|ref|YP_004781707.1| - 8.7e-07 28.5 0.0 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|347524137|ref|YP_004781707.1| - 6e-05 23.3 0.0 0.00015 21.9 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|347524137|ref|YP_004781707.1| - 7.6e-05 22.8 0.0 0.00024 21.2 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.19 gi|347524137|ref|YP_004781707.1| - 0.001 19.7 0.0 0.0038 17.9 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|347524137|ref|YP_004781707.1| - 0.0026 17.7 0.2 5.4 7.0 0.0 3.2 3 0 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|347524137|ref|YP_004781707.1| - 0.0033 17.5 0.0 0.011 15.8 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|347524137|ref|YP_004781707.1| - 0.031 13.9 0.1 0.066 12.9 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DS PF01916.17 gi|347524138|ref|YP_004781708.1| - 1.4e-99 333.0 0.0 1.6e-99 332.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase RNase_PH_C PF03725.15 gi|347524138|ref|YP_004781708.1| - 0.0085 16.1 0.0 0.028 14.4 0.0 1.9 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 Methyltransf_25 PF13649.6 gi|347524139|ref|YP_004781709.1| - 5.8e-10 39.8 0.0 9.7e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347524139|ref|YP_004781709.1| - 1.8e-06 28.5 0.1 4.2e-06 27.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|347524139|ref|YP_004781709.1| - 1.9e-06 27.7 0.0 2.3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|347524139|ref|YP_004781709.1| - 1.1e-05 25.0 0.0 5.2e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Histone methylation protein DOT1 Ubie_methyltran PF01209.18 gi|347524139|ref|YP_004781709.1| - 3.8e-05 23.2 0.0 4.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|347524139|ref|YP_004781709.1| - 0.00019 21.0 0.0 0.00027 20.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.20 gi|347524139|ref|YP_004781709.1| - 0.0013 17.8 0.0 0.0016 17.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.18 gi|347524139|ref|YP_004781709.1| - 0.002 17.9 0.0 0.0043 16.7 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.20 gi|347524139|ref|YP_004781709.1| - 0.0028 17.0 0.0 0.0038 16.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|347524139|ref|YP_004781709.1| - 0.0061 16.5 0.0 0.0082 16.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|347524139|ref|YP_004781709.1| - 0.012 15.3 0.2 0.016 14.8 0.2 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|347524139|ref|YP_004781709.1| - 0.016 15.0 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347524139|ref|YP_004781709.1| - 0.027 15.2 0.0 0.045 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|347524139|ref|YP_004781709.1| - 0.03 14.3 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|347524139|ref|YP_004781709.1| - 0.035 13.7 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase VapB_antitoxin PF09957.9 gi|347524139|ref|YP_004781709.1| - 0.042 13.8 0.2 0.4 10.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB AdoMet_MTase PF07757.13 gi|347524139|ref|YP_004781709.1| - 0.058 13.7 0.0 0.091 13.1 0.0 1.3 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase PrpR_N PF06506.11 gi|347524139|ref|YP_004781709.1| - 0.099 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Propionate catabolism activator Cons_hypoth95 PF03602.15 gi|347524139|ref|YP_004781709.1| - 0.14 11.7 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|347524141|ref|YP_004781711.1| - 6.1e-20 71.5 0.0 8e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|347524141|ref|YP_004781711.1| - 1.4e-17 64.2 0.1 3.6e-17 62.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347524141|ref|YP_004781711.1| - 3e-15 56.7 0.0 7.2e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347524141|ref|YP_004781711.1| - 1.1e-07 32.5 0.0 2.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|347524141|ref|YP_004781711.1| - 3.8e-07 30.1 0.0 6e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|347524141|ref|YP_004781711.1| - 5e-07 29.6 0.0 9.3e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|347524141|ref|YP_004781711.1| - 0.0028 17.6 0.0 0.01 15.7 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase PrmA PF06325.13 gi|347524141|ref|YP_004781711.1| - 0.0052 16.2 0.0 0.007 15.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|347524141|ref|YP_004781711.1| - 0.02 14.9 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.11 gi|347524141|ref|YP_004781711.1| - 0.033 13.8 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 gi|347524141|ref|YP_004781711.1| - 0.033 13.7 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|347524141|ref|YP_004781711.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Flavoprotein PF02441.19 gi|347524142|ref|YP_004781712.1| - 3.5e-16 59.3 0.0 4.4e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein tRNA_int_endo PF01974.17 gi|347524144|ref|YP_004781714.1| - 7.9e-27 93.2 0.3 1.4e-26 92.4 0.3 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|347524144|ref|YP_004781714.1| - 6e-20 70.7 0.1 8.9e-20 70.1 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain PhoU_div PF01865.16 gi|347524145|ref|YP_004781715.1| - 8e-11 41.7 8.5 9e-11 41.5 8.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|347524145|ref|YP_004781715.1| - 0.0035 17.8 13.9 0.023 15.2 5.5 2.3 2 0 0 2 2 2 2 PhoU domain DUF1512 PF07431.12 gi|347524145|ref|YP_004781715.1| - 0.11 11.5 1.5 0.43 9.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1512) EccE PF11203.8 gi|347524145|ref|YP_004781715.1| - 0.13 12.6 0.1 0.34 11.2 0.1 1.8 1 1 0 1 1 1 0 Putative type VII ESX secretion system translocon, EccE RNA_pol_Rpb1_5 PF04998.17 gi|347524145|ref|YP_004781715.1| - 0.38 10.1 0.8 0.81 9.1 0.5 1.5 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 5 Radical_SAM PF04055.21 gi|347524146|ref|YP_004781716.1| - 1.9e-14 54.4 0.0 1.3e-13 51.7 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|347524146|ref|YP_004781716.1| - 8.2e-06 25.9 0.1 1.7e-05 24.9 0.1 1.5 1 0 0 1 1 1 1 B12 binding domain MutS_V PF00488.21 gi|347524147|ref|YP_004781717.1| - 1.6e-09 38.1 0.5 2.8e-09 37.3 0.5 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|347524147|ref|YP_004781717.1| - 4.8e-06 26.9 0.0 4.9e-05 23.6 0.0 2.2 1 1 0 1 1 1 1 MutS domain III AAA_21 PF13304.6 gi|347524147|ref|YP_004781717.1| - 0.00021 21.2 0.3 0.23 11.3 0.3 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system HHH_2 PF12826.7 gi|347524147|ref|YP_004781717.1| - 0.00067 19.7 0.4 0.024 14.7 0.0 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|347524147|ref|YP_004781717.1| - 0.0016 19.0 0.0 0.035 14.7 0.0 3.0 1 1 0 2 2 2 1 Helix-hairpin-helix domain DUF3701 PF12482.8 gi|347524147|ref|YP_004781717.1| - 0.017 15.2 0.1 6.3 7.0 0.0 3.1 3 0 0 3 3 3 0 Phage integrase protein HHH_8 PF14716.6 gi|347524147|ref|YP_004781717.1| - 0.017 15.4 0.4 0.21 12.0 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix domain AAA_14 PF13173.6 gi|347524147|ref|YP_004781717.1| - 0.028 14.5 0.0 0.066 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain 5_3_exonuc PF01367.20 gi|347524147|ref|YP_004781717.1| - 0.031 14.9 1.3 1.5 9.5 0.0 3.9 4 1 0 4 4 4 0 5'-3' exonuclease, C-terminal SAM fold AAA_28 PF13521.6 gi|347524147|ref|YP_004781717.1| - 0.035 14.4 0.2 0.13 12.5 0.2 2.0 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|347524147|ref|YP_004781717.1| - 0.036 14.5 0.6 0.11 12.9 0.1 2.2 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) IMS_HHH PF11798.8 gi|347524147|ref|YP_004781717.1| - 0.045 14.1 0.0 0.18 12.2 0.0 2.2 1 0 0 1 1 1 0 IMS family HHH motif DASH_Dad3 PF08656.10 gi|347524147|ref|YP_004781717.1| - 0.066 13.3 0.6 0.64 10.1 0.1 2.6 2 0 0 2 2 2 0 DASH complex subunit Dad3 ABC_tran PF00005.27 gi|347524147|ref|YP_004781717.1| - 0.072 13.6 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|347524147|ref|YP_004781717.1| - 0.08 13.3 3.3 0.43 10.9 0.2 3.3 3 2 1 4 4 4 0 AAA ATPase domain AAA_29 PF13555.6 gi|347524147|ref|YP_004781717.1| - 0.12 12.2 0.1 0.49 10.2 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|347524147|ref|YP_004781717.1| - 1.1 9.8 2.3 0.9 10.0 0.3 1.8 2 0 0 2 2 1 0 AAA domain AGOG PF09171.10 gi|347524148|ref|YP_004781718.1| - 1.3e-46 158.9 0.0 1.7e-46 158.6 0.0 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Aldolase_II PF00596.21 gi|347524149|ref|YP_004781719.1| - 8.1e-34 117.2 0.0 1e-33 116.9 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain T2SSF PF00482.23 gi|347524150|ref|YP_004781720.1| - 2.2e-16 60.0 0.4 6.5e-16 58.4 0.4 1.8 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F T2SSF PF00482.23 gi|347524151|ref|YP_004781721.1| - 7.3e-07 29.2 3.2 7.3e-07 29.2 3.2 3.1 3 1 1 4 4 4 1 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|347524152|ref|YP_004781722.1| - 2e-53 181.2 0.0 3.6e-53 180.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|347524152|ref|YP_004781722.1| - 3.6e-06 27.5 0.0 3.4e-05 24.4 0.0 2.2 2 0 0 2 2 2 1 ABC transporter AAA_23 PF13476.6 gi|347524152|ref|YP_004781722.1| - 6.3e-06 26.8 0.0 1.1e-05 26.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347524152|ref|YP_004781722.1| - 8.8e-05 22.8 0.0 0.0006 20.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|347524152|ref|YP_004781722.1| - 0.00055 19.6 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|347524152|ref|YP_004781722.1| - 0.0011 18.9 0.0 0.0023 17.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|347524152|ref|YP_004781722.1| - 0.0013 19.1 0.1 0.0066 16.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|347524152|ref|YP_004781722.1| - 0.0016 18.2 0.0 0.0056 16.4 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|347524152|ref|YP_004781722.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|347524152|ref|YP_004781722.1| - 0.013 15.8 0.0 0.037 14.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|347524152|ref|YP_004781722.1| - 0.015 14.6 0.0 0.031 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_21 PF13304.6 gi|347524152|ref|YP_004781722.1| - 0.018 14.8 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system cobW PF02492.19 gi|347524152|ref|YP_004781722.1| - 0.023 14.3 0.1 0.059 13.0 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|347524152|ref|YP_004781722.1| - 0.025 14.3 0.0 0.09 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|347524152|ref|YP_004781722.1| - 0.028 14.5 0.0 0.069 13.2 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|347524152|ref|YP_004781722.1| - 0.036 14.0 0.0 0.09 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF3562 PF12085.8 gi|347524152|ref|YP_004781722.1| - 0.041 13.5 0.6 3.7 7.2 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) AAA_30 PF13604.6 gi|347524152|ref|YP_004781722.1| - 0.047 13.4 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|347524152|ref|YP_004781722.1| - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_18 PF13238.6 gi|347524152|ref|YP_004781722.1| - 0.066 13.8 0.1 0.29 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|347524152|ref|YP_004781722.1| - 0.082 12.9 0.0 0.25 11.3 0.0 1.8 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|347524152|ref|YP_004781722.1| - 0.084 13.3 0.0 0.2 12.1 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|347524152|ref|YP_004781722.1| - 0.085 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|347524152|ref|YP_004781722.1| - 0.09 12.8 0.0 0.31 11.1 0.0 2.0 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|347524152|ref|YP_004781722.1| - 0.11 12.3 0.0 0.31 10.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_25 PF13481.6 gi|347524152|ref|YP_004781722.1| - 0.13 11.8 0.1 0.59 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain 3H PF02829.14 gi|347524152|ref|YP_004781722.1| - 0.14 12.5 0.0 0.4 11.0 0.0 1.8 1 0 0 1 1 1 0 3H domain PduV-EutP PF10662.9 gi|347524152|ref|YP_004781722.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TackOD1 PF18551.1 gi|347524153|ref|YP_004781723.1| - 4e-31 108.1 3.0 5.7e-31 107.7 3.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc_ribbon_9 PF14369.6 gi|347524153|ref|YP_004781723.1| - 0.00032 20.9 13.1 0.082 13.2 2.9 4.4 4 0 0 4 4 4 1 zinc-ribbon HypA PF01155.19 gi|347524153|ref|YP_004781723.1| - 0.0004 20.4 7.8 0.069 13.2 0.3 3.1 1 1 2 3 3 3 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|347524153|ref|YP_004781723.1| - 0.00051 20.0 8.9 0.21 11.6 6.9 2.8 2 1 0 2 2 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|347524153|ref|YP_004781723.1| - 0.00057 19.8 16.0 0.012 15.6 0.7 4.4 2 2 2 4 4 4 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|347524153|ref|YP_004781723.1| - 0.0023 17.3 7.9 1 8.8 0.2 4.5 4 0 0 4 4 4 1 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|347524153|ref|YP_004781723.1| - 0.0051 17.5 14.0 29 5.9 0.0 5.4 5 0 0 5 5 5 0 C2H2-type zinc finger zf-Di19 PF05605.12 gi|347524153|ref|YP_004781723.1| - 0.0078 16.5 8.9 0.015 15.6 2.0 3.3 1 1 1 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_3rep PF18868.1 gi|347524153|ref|YP_004781723.1| - 0.015 16.0 1.6 0.23 12.2 0.2 2.3 2 0 0 2 2 2 0 Zinc finger C2H2-type, 3 repeats NRDD PF13597.6 gi|347524153|ref|YP_004781723.1| - 0.015 14.1 3.5 0.019 13.8 0.2 2.1 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zinc-ribbons_6 PF07191.12 gi|347524153|ref|YP_004781723.1| - 0.035 14.1 10.1 0.53 10.3 3.2 2.7 1 1 2 3 3 3 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|347524153|ref|YP_004781723.1| - 0.039 14.1 14.9 7.3 6.8 0.0 5.1 4 1 1 5 5 5 0 Zinc ribbon domain PriA_CRR PF18319.1 gi|347524153|ref|YP_004781723.1| - 0.14 12.1 21.5 2.5 8.2 1.0 4.9 4 1 0 4 4 4 0 PriA DNA helicase Cys-rich region (CRR) domain zinc_ribbon_15 PF17032.5 gi|347524153|ref|YP_004781723.1| - 0.2 12.4 9.2 1.2 9.9 2.5 2.6 1 1 2 3 3 3 0 zinc-ribbon family DpnI PF06044.12 gi|347524153|ref|YP_004781723.1| - 0.28 10.8 5.2 15 5.1 1.1 3.1 2 1 1 3 3 3 0 Dam-replacing family zf-RING_7 PF02591.15 gi|347524153|ref|YP_004781723.1| - 0.29 11.4 11.5 6.6 7.0 0.0 4.9 6 0 0 6 6 4 0 C4-type zinc ribbon domain DUF2318 PF10080.9 gi|347524153|ref|YP_004781723.1| - 0.32 11.2 7.5 11 6.3 0.4 3.2 1 1 2 3 3 3 0 Predicted membrane protein (DUF2318) Mu-like_Com PF10122.9 gi|347524153|ref|YP_004781723.1| - 0.35 10.4 8.4 0.14 11.6 0.9 3.1 3 1 0 3 3 3 0 Mu-like prophage protein Com DUF1178 PF06676.11 gi|347524153|ref|YP_004781723.1| - 0.42 11.0 0.2 0.42 11.0 0.2 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1178) zinc_ribbon_4 PF13717.6 gi|347524153|ref|YP_004781723.1| - 0.87 9.6 16.9 6.2 6.8 0.0 5.5 4 1 0 4 4 4 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|347524153|ref|YP_004781723.1| - 1 9.4 10.4 1.4 9.0 0.0 4.0 5 0 0 5 5 4 0 PhnA Zinc-Ribbon FdhE PF04216.12 gi|347524153|ref|YP_004781723.1| - 1 9.1 5.9 0.62 9.9 0.4 2.2 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation NOB1_Zn_bind PF08772.11 gi|347524153|ref|YP_004781723.1| - 2.3 8.4 11.6 0.18 12.0 0.3 2.9 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like LIM PF00412.22 gi|347524153|ref|YP_004781723.1| - 2.5 8.4 11.8 0.66 10.2 2.4 2.9 2 1 1 3 3 2 0 LIM domain Prok-RING_1 PF14446.6 gi|347524153|ref|YP_004781723.1| - 4 7.4 10.8 2.8 8.0 0.3 3.7 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 zf-H2C2_2 PF13465.6 gi|347524153|ref|YP_004781723.1| - 4.2 8.0 19.7 0.56 10.7 1.8 4.7 5 0 0 5 5 4 0 Zinc-finger double domain zf-trcl PF13451.6 gi|347524153|ref|YP_004781723.1| - 4.4 7.3 8.8 26 4.8 0.1 4.3 5 0 0 5 5 5 0 Probable zinc-ribbon domain Lar_restr_allev PF14354.6 gi|347524153|ref|YP_004781723.1| - 4.6 7.7 12.1 3.9 7.9 2.4 3.5 3 1 0 3 3 3 0 Restriction alleviation protein Lar Elf1 PF05129.13 gi|347524153|ref|YP_004781723.1| - 6.7 6.8 10.8 27 4.9 1.1 3.9 1 1 3 4 4 4 0 Transcription elongation factor Elf1 like zf-Mss51 PF13824.6 gi|347524153|ref|YP_004781723.1| - 8.8 6.5 11.9 5.8 7.1 1.1 3.0 3 1 0 3 3 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CarboxypepD_reg PF13620.6 gi|347524154|ref|YP_004781724.1| - 1e-26 93.0 4.9 5.7e-10 39.3 0.0 8.1 8 1 0 8 8 8 4 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|347524154|ref|YP_004781724.1| - 8.5e-14 51.2 0.9 0.0072 16.2 0.0 5.4 4 0 0 4 4 4 4 PEGA domain CarbopepD_reg_2 PF13715.6 gi|347524154|ref|YP_004781724.1| - 4.7e-13 48.9 0.1 8.4e-07 28.9 0.0 5.2 3 1 1 4 4 4 2 CarboxypepD_reg-like domain DUF4198 PF10670.9 gi|347524154|ref|YP_004781724.1| - 4.8e-05 23.8 0.2 0.014 15.7 0.1 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) TcfC PF16967.5 gi|347524154|ref|YP_004781724.1| - 0.026 14.0 1.9 1.6 8.3 0.0 3.9 4 0 0 4 4 4 0 E-set like domain Y_Y_Y PF07495.13 gi|347524154|ref|YP_004781724.1| - 0.038 13.9 5.1 39 4.3 0.0 4.7 4 0 0 4 4 4 0 Y_Y_Y domain bMG6 PF17962.1 gi|347524154|ref|YP_004781724.1| - 0.038 14.1 0.0 4.4 7.5 0.0 3.4 4 0 0 4 4 4 0 Bacterial macroglobulin domain 6 Big_3_5 PF16640.5 gi|347524154|ref|YP_004781724.1| - 0.041 14.1 1.2 0.72 10.1 0.2 3.4 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) bMG3 PF11974.8 gi|347524154|ref|YP_004781724.1| - 0.079 13.0 0.7 17 5.5 0.0 3.4 4 0 0 4 4 4 0 Bacterial alpha-2-macroglobulin MG3 domain SpaA PF17802.1 gi|347524154|ref|YP_004781724.1| - 0.13 12.6 2.1 4 7.8 0.0 3.8 4 1 0 4 4 3 0 Prealbumin-like fold domain Big_1 PF02369.16 gi|347524154|ref|YP_004781724.1| - 0.22 11.5 6.6 0.33 11.0 0.5 4.0 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 1) He_PIG PF05345.12 gi|347524154|ref|YP_004781724.1| - 0.59 10.4 3.1 9.2 6.5 0.2 3.7 3 0 0 3 3 3 0 Putative Ig domain WGG PF10273.9 gi|347524155|ref|YP_004781725.1| - 0.13 12.9 0.0 0.21 12.3 0.0 1.3 1 0 0 1 1 1 0 Pre-rRNA-processing protein TSR2 DUF4455 PF14643.6 gi|347524155|ref|YP_004781725.1| - 0.17 10.5 0.1 0.21 10.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) Acetyltransf_1 PF00583.25 gi|347524156|ref|YP_004781726.1| - 6.7e-24 84.4 0.1 8.2e-24 84.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|347524156|ref|YP_004781726.1| - 3e-16 59.6 0.3 5.1e-16 58.9 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|347524156|ref|YP_004781726.1| - 2.6e-15 56.5 0.1 4.7e-15 55.6 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|347524156|ref|YP_004781726.1| - 2.2e-12 46.8 0.0 4.8e-12 45.7 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|347524156|ref|YP_004781726.1| - 9.8e-10 38.6 0.2 2.1e-09 37.5 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|347524156|ref|YP_004781726.1| - 1.8e-08 34.2 0.2 3.7e-08 33.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|347524156|ref|YP_004781726.1| - 6.3e-08 33.4 0.1 9.6e-08 32.8 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|347524156|ref|YP_004781726.1| - 3.8e-07 30.4 0.1 8.6e-07 29.2 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|347524156|ref|YP_004781726.1| - 5.6e-06 26.0 0.0 1.1e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_CG PF14542.6 gi|347524156|ref|YP_004781726.1| - 0.00039 20.5 0.0 0.00067 19.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|347524156|ref|YP_004781726.1| - 0.00085 19.0 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_13 PF13880.6 gi|347524156|ref|YP_004781726.1| - 0.0032 17.4 0.0 0.0067 16.4 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_18 PF18014.1 gi|347524156|ref|YP_004781726.1| - 0.031 14.1 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|347524156|ref|YP_004781726.1| - 0.043 14.1 0.0 0.083 13.1 0.0 1.4 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region PA14 PF07691.12 gi|347524157|ref|YP_004781727.1| - 7.3e-23 81.0 0.0 9.2e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 PA14 domain GLEYA PF10528.9 gi|347524157|ref|YP_004781727.1| - 7e-06 26.4 0.0 1.3e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 GLEYA domain DUF1722 PF08349.11 gi|347524160|ref|YP_004781730.1| - 0.094 13.0 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1722) Aconitase_C PF00694.19 gi|347524161|ref|YP_004781731.1| - 6.2e-21 75.1 0.0 8e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|347524161|ref|YP_004781731.1| - 0.011 15.4 0.1 0.066 12.8 0.0 1.9 1 1 1 2 2 2 0 Aconitate hydratase 2 N-terminus B12D PF06522.11 gi|347524162|ref|YP_004781732.1| - 2.6 7.9 6.4 0.42 10.4 2.1 1.8 1 1 1 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit ATP-grasp PF02222.22 gi|347524163|ref|YP_004781733.1| - 4.8e-42 143.4 0.0 7.9e-42 142.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|347524163|ref|YP_004781733.1| - 9.6e-09 35.1 0.0 1.8e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|347524163|ref|YP_004781733.1| - 5.2e-07 29.4 0.0 1.3e-06 28.1 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|347524163|ref|YP_004781733.1| - 3.2e-05 23.5 0.0 6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain LAL_C2 PF18603.1 gi|347524163|ref|YP_004781733.1| - 0.0014 18.8 0.6 0.0066 16.6 0.1 2.3 2 0 0 2 2 2 1 L-amino acid ligase C-terminal domain 2 GARS_A PF01071.19 gi|347524163|ref|YP_004781733.1| - 0.0015 18.4 0.0 0.0051 16.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|347524163|ref|YP_004781733.1| - 0.0021 18.1 0.0 0.011 15.8 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain Pyr_redox PF00070.27 gi|347524163|ref|YP_004781733.1| - 0.0029 18.1 0.2 0.031 14.8 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ATPgrasp_N PF18130.1 gi|347524163|ref|YP_004781733.1| - 0.012 16.2 0.2 0.2 12.3 0.0 2.6 2 0 0 2 2 2 0 ATP-grasp N-terminal domain 2-Hacid_dh_C PF02826.19 gi|347524163|ref|YP_004781733.1| - 0.014 14.8 0.0 0.032 13.6 0.0 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|347524163|ref|YP_004781733.1| - 0.015 14.5 0.0 0.028 13.6 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|347524163|ref|YP_004781733.1| - 0.036 13.4 0.1 0.075 12.4 0.1 1.4 1 1 0 1 1 1 0 ThiF family XdhC_C PF13478.6 gi|347524163|ref|YP_004781733.1| - 0.057 13.9 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain GARS_C PF02843.16 gi|347524163|ref|YP_004781733.1| - 0.062 13.6 0.5 0.36 11.1 0.1 2.4 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, C domain Relaxase PF03432.14 gi|347524163|ref|YP_004781733.1| - 0.13 11.8 0.0 0.82 9.2 0.0 2.0 2 0 0 2 2 2 0 Relaxase/Mobilisation nuclease domain DUF5321 PF17254.2 gi|347524164|ref|YP_004781734.1| - 0.027 13.9 0.9 0.036 13.5 0.1 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5321) CBS PF00571.28 gi|347524165|ref|YP_004781735.1| - 1.8e-17 63.5 9.6 6.8e-09 36.1 0.2 5.6 5 1 0 5 5 5 4 CBS domain AsnC_trans_reg PF01037.21 gi|347524165|ref|YP_004781735.1| - 6e-11 42.2 0.2 1.3e-10 41.1 0.2 1.6 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|347524165|ref|YP_004781735.1| - 2.4e-05 24.3 1.2 0.0021 18.1 0.3 2.6 2 0 0 2 2 2 2 NapD protein Peptidase_M17 PF00883.21 gi|347524166|ref|YP_004781736.1| - 5.7e-109 364.2 0.0 7e-109 363.9 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain ThrE_2 PF12821.7 gi|347524166|ref|YP_004781736.1| - 0.075 13.2 1.0 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 Threonine/Serine exporter, ThrE SPOR PF05036.13 gi|347524168|ref|YP_004781738.1| - 0.16 12.3 0.3 0.47 10.9 0.1 1.9 2 0 0 2 2 2 0 Sporulation related domain Vps54 PF07928.12 gi|347524170|ref|YP_004781740.1| - 0.083 13.3 0.0 0.1 13.0 0.0 1.1 1 0 0 1 1 1 0 Vps54-like protein Baculo_PEP_C PF04513.12 gi|347524171|ref|YP_004781741.1| - 0.0065 16.5 5.5 0.014 15.4 5.5 1.6 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|347524171|ref|YP_004781741.1| - 0.039 11.9 2.6 0.054 11.5 2.6 1.1 1 0 0 1 1 1 0 Prominin Spc7 PF08317.11 gi|347524171|ref|YP_004781741.1| - 0.054 12.4 0.6 0.079 11.8 0.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein ApoLp-III PF07464.11 gi|347524171|ref|YP_004781741.1| - 0.073 13.2 1.0 0.14 12.3 1.0 1.4 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) AIP3 PF03915.13 gi|347524171|ref|YP_004781741.1| - 0.082 12.0 3.1 0.12 11.4 3.1 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 HsbA PF12296.8 gi|347524171|ref|YP_004781741.1| - 0.23 11.9 4.1 0.5 10.8 4.1 1.6 1 0 0 1 1 1 0 Hydrophobic surface binding protein A DUF1664 PF07889.12 gi|347524171|ref|YP_004781741.1| - 0.27 11.3 5.7 1.4 9.0 3.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Phasin PF05597.11 gi|347524171|ref|YP_004781741.1| - 0.27 11.2 0.5 1.5 8.9 0.1 2.2 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) NleF_casp_inhib PF16809.5 gi|347524171|ref|YP_004781741.1| - 0.35 10.8 4.1 0.76 9.7 4.1 1.5 1 0 0 1 1 1 0 NleF caspase inhibitor DUF5082 PF16888.5 gi|347524171|ref|YP_004781741.1| - 2.3 8.5 3.5 14 5.9 3.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Fib_alpha PF08702.10 gi|347524171|ref|YP_004781741.1| - 2.7 8.2 3.6 4.3 7.5 3.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|347524171|ref|YP_004781741.1| - 4.5 7.8 6.1 1.4e+02 3.0 6.1 2.7 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Aminotran_1_2 PF00155.21 gi|347524172|ref|YP_004781742.1| - 1.2e-41 143.1 0.0 1.4e-41 142.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|347524172|ref|YP_004781742.1| - 7.5e-16 57.9 0.0 1.1e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|347524172|ref|YP_004781742.1| - 0.0018 17.7 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|347524172|ref|YP_004781742.1| - 0.039 13.2 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase ADH_zinc_N PF00107.26 gi|347524172|ref|YP_004781742.1| - 0.05 13.6 0.0 7.2 6.6 0.0 3.4 2 1 1 3 3 3 0 Zinc-binding dehydrogenase Aminotran_5 PF00266.19 gi|347524172|ref|YP_004781742.1| - 0.053 12.5 0.0 0.082 11.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V LuxE PF04443.12 gi|347524172|ref|YP_004781742.1| - 0.22 10.5 0.0 0.34 9.9 0.0 1.2 1 0 0 1 1 1 0 Acyl-protein synthetase, LuxE Radical_SAM PF04055.21 gi|347524173|ref|YP_004781743.1| - 1.1e-25 90.9 0.1 8.7e-25 88.0 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347524173|ref|YP_004781743.1| - 3.5e-09 37.1 0.0 7.2e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347524173|ref|YP_004781743.1| - 4.8e-07 29.9 0.0 9.8e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Hydrolase_6 PF13344.6 gi|347524173|ref|YP_004781743.1| - 0.03 14.4 0.0 2.6 8.2 0.0 2.6 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CTP_transf_3 PF02348.19 gi|347524173|ref|YP_004781743.1| - 0.036 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase HAD_2 PF13419.6 gi|347524173|ref|YP_004781743.1| - 0.17 12.0 0.0 1.3 9.0 0.0 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|347524173|ref|YP_004781743.1| - 0.21 12.0 0.0 0.33 11.3 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|347524174|ref|YP_004781744.1| - 0.013 16.0 3.6 0.016 15.6 0.8 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain ATP13 PF12921.7 gi|347524174|ref|YP_004781744.1| - 0.019 14.8 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ATPase expression DUF3213 PF11491.8 gi|347524174|ref|YP_004781744.1| - 0.3 11.3 3.3 0.86 9.8 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3213) RNA_pol_Rpo13 PF12136.8 gi|347524175|ref|YP_004781745.1| - 0.0064 16.4 14.7 0.017 15.0 10.7 2.6 2 1 0 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain DUF1844 PF08899.11 gi|347524175|ref|YP_004781745.1| - 0.12 12.6 0.6 0.12 12.6 0.6 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1844) DEAD PF00270.29 gi|347524176|ref|YP_004781746.1| - 1.2e-31 109.9 0.0 2.9e-31 108.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|347524176|ref|YP_004781746.1| - 2.1e-24 86.4 1.0 6.1e-24 84.9 1.0 1.8 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|347524176|ref|YP_004781746.1| - 7.3e-21 74.6 0.0 3e-19 69.4 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|347524176|ref|YP_004781746.1| - 3.3e-05 24.0 0.0 5.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Zn-ribbon_8 PF09723.10 gi|347524176|ref|YP_004781746.1| - 0.00088 19.3 1.1 0.0019 18.3 1.1 1.5 1 0 0 1 1 1 1 Zinc ribbon domain HHH_5 PF14520.6 gi|347524176|ref|YP_004781746.1| - 0.0028 18.2 0.0 0.015 15.9 0.0 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|347524176|ref|YP_004781746.1| - 0.01 15.5 0.1 0.033 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain HHH PF00633.23 gi|347524176|ref|YP_004781746.1| - 0.016 15.0 0.4 0.055 13.4 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif HypA PF01155.19 gi|347524176|ref|YP_004781746.1| - 0.02 14.9 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|347524176|ref|YP_004781746.1| - 0.054 13.0 0.4 0.52 9.9 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding AAA_19 PF13245.6 gi|347524176|ref|YP_004781746.1| - 0.15 12.4 0.1 1.3 9.4 0.0 2.5 2 2 0 2 2 2 0 AAA domain ADK_lid PF05191.14 gi|347524176|ref|YP_004781746.1| - 0.18 11.8 0.3 0.44 10.6 0.3 1.7 1 0 0 1 1 1 0 Adenylate kinase, active site lid Phage_lysis PF03245.13 gi|347524176|ref|YP_004781746.1| - 0.18 11.9 0.4 1.4 9.1 0.0 2.2 2 0 0 2 2 2 0 Bacteriophage Rz lysis protein zinc_ribbon_9 PF14369.6 gi|347524176|ref|YP_004781746.1| - 0.42 10.9 1.0 1.6 9.1 1.1 1.9 1 1 1 2 2 2 0 zinc-ribbon PAPS_reduct PF01507.19 gi|347524177|ref|YP_004781747.1| - 3.9e-44 150.7 0.0 6.6e-44 150.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_6 PF12837.7 gi|347524177|ref|YP_004781747.1| - 8.8e-06 25.6 15.8 0.0024 17.9 2.1 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347524177|ref|YP_004781747.1| - 9.3e-06 26.1 12.4 3.4e-05 24.3 12.4 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347524177|ref|YP_004781747.1| - 1.9e-05 25.0 3.1 0.086 13.3 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347524177|ref|YP_004781747.1| - 5.5e-05 23.2 11.0 5.5e-05 23.2 11.0 2.5 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347524177|ref|YP_004781747.1| - 6.5e-05 23.4 2.4 0.44 11.1 0.1 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|347524177|ref|YP_004781747.1| - 0.00036 20.7 0.6 0.00076 19.7 0.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|347524177|ref|YP_004781747.1| - 0.00054 19.7 25.7 0.0025 17.6 4.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347524177|ref|YP_004781747.1| - 0.0015 18.5 4.0 0.0015 18.5 4.0 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347524177|ref|YP_004781747.1| - 0.0016 18.5 13.4 0.021 14.9 13.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain UPF0113 PF03657.13 gi|347524177|ref|YP_004781747.1| - 0.0046 17.2 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain Fer4_4 PF12800.7 gi|347524177|ref|YP_004781747.1| - 0.0057 17.1 17.3 0.11 13.1 2.2 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|347524177|ref|YP_004781747.1| - 0.0082 17.1 16.6 0.081 13.9 3.9 3.2 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain PUA PF01472.20 gi|347524177|ref|YP_004781747.1| - 0.053 13.5 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 PUA domain Fer4_22 PF17179.4 gi|347524177|ref|YP_004781747.1| - 0.36 11.7 5.1 3.4 8.6 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347524177|ref|YP_004781747.1| - 0.4 10.8 23.7 0.08 13.1 15.5 3.3 3 1 1 4 4 3 0 4Fe-4S dicluster domain Hexapep PF00132.24 gi|347524178|ref|YP_004781748.1| - 2.3e-23 81.0 38.3 4.3e-07 29.4 2.4 5.5 4 1 1 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|347524178|ref|YP_004781748.1| - 4.2e-11 42.4 29.7 0.00016 21.4 7.2 6.9 1 1 6 7 7 7 7 Hexapeptide repeat of succinyl-transferase ParD_antitoxin PF03693.14 gi|347524179|ref|YP_004781749.1| - 1.1e-06 28.9 0.0 1.9e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_1 PF01402.21 gi|347524179|ref|YP_004781749.1| - 0.006 16.5 1.2 0.019 14.9 0.1 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|347524179|ref|YP_004781749.1| - 0.0081 16.3 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family PSK_trans_fac PF07704.11 gi|347524179|ref|YP_004781749.1| - 0.36 11.6 1.2 3.7 8.4 0.0 2.2 2 0 0 2 2 2 0 Rv0623-like transcription factor CEP44 PF15007.6 gi|347524180|ref|YP_004781750.1| - 0.21 11.8 0.0 0.29 11.3 0.0 1.1 1 0 0 1 1 1 0 Centrosomal spindle body, CEP44 Apolipoprotein PF01442.18 gi|347524181|ref|YP_004781751.1| - 2.8e-12 46.9 15.9 2.8e-11 43.7 7.7 2.5 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|347524181|ref|YP_004781751.1| - 7.4e-12 45.5 21.5 1.6e-05 25.0 4.7 3.3 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|347524181|ref|YP_004781751.1| - 9.8e-09 35.3 21.2 0.0059 16.6 2.0 4.4 1 1 3 4 4 4 4 Protein of unknown function (DUF1664) DUF4795 PF16043.5 gi|347524181|ref|YP_004781751.1| - 8.7e-08 32.0 9.5 0.0022 17.7 0.2 2.2 1 1 0 2 2 2 2 Domain of unknown function (DUF4795) NPV_P10 PF05531.12 gi|347524181|ref|YP_004781751.1| - 9.4e-08 32.4 24.8 0.00043 20.7 1.6 5.1 1 1 3 4 4 4 3 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|347524181|ref|YP_004781751.1| - 2e-05 23.0 5.9 3.3e-05 22.3 5.9 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA CENP-F_leu_zip PF10473.9 gi|347524181|ref|YP_004781751.1| - 2.6e-05 24.3 2.9 0.065 13.3 0.2 3.1 2 1 1 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_13 PF13166.6 gi|347524181|ref|YP_004781751.1| - 4.5e-05 22.3 15.0 0.00018 20.3 7.1 2.0 1 1 1 2 2 2 1 AAA domain FlaC_arch PF05377.11 gi|347524181|ref|YP_004781751.1| - 6.7e-05 23.2 8.5 1.4 9.4 0.1 5.3 3 2 2 5 5 5 1 Flagella accessory protein C (FlaC) Prominin PF05478.11 gi|347524181|ref|YP_004781751.1| - 0.00013 20.1 9.4 0.00092 17.3 9.3 1.9 1 1 0 1 1 1 1 Prominin Filament PF00038.21 gi|347524181|ref|YP_004781751.1| - 0.00015 21.5 2.5 0.054 13.1 0.5 2.3 1 1 0 2 2 2 1 Intermediate filament protein Spc7 PF08317.11 gi|347524181|ref|YP_004781751.1| - 0.0003 19.8 8.7 0.084 11.7 1.7 2.2 1 1 2 3 3 3 3 Spc7 kinetochore protein DUF3584 PF12128.8 gi|347524181|ref|YP_004781751.1| - 0.00047 17.9 2.9 0.00067 17.3 2.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) HSBP1 PF06825.12 gi|347524181|ref|YP_004781751.1| - 0.00095 19.0 0.1 7.2 6.6 0.0 3.9 3 1 1 4 4 4 0 Heat shock factor binding protein 1 IFT57 PF10498.9 gi|347524181|ref|YP_004781751.1| - 0.0025 16.9 4.5 0.16 10.9 0.1 2.7 1 1 0 3 3 3 1 Intra-flagellar transport protein 57 DUF5082 PF16888.5 gi|347524181|ref|YP_004781751.1| - 0.003 17.8 3.4 0.77 10.0 0.0 3.6 1 1 1 3 3 3 1 Domain of unknown function (DUF5082) CLZ PF16526.5 gi|347524181|ref|YP_004781751.1| - 0.0033 17.7 1.4 4 7.9 0.0 3.6 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF2730 PF10805.8 gi|347524181|ref|YP_004781751.1| - 0.0054 16.8 6.6 1.6 8.9 0.5 3.5 2 1 1 3 3 3 1 Protein of unknown function (DUF2730) RmuC PF02646.16 gi|347524181|ref|YP_004781751.1| - 0.0055 15.9 6.1 0.062 12.4 0.1 2.9 1 1 2 4 4 4 1 RmuC family Snapin_Pallidin PF14712.6 gi|347524181|ref|YP_004781751.1| - 0.0068 16.8 1.9 7.5 7.0 0.1 3.4 2 2 2 4 4 4 0 Snapin/Pallidin Bacillus_HBL PF05791.11 gi|347524181|ref|YP_004781751.1| - 0.0085 15.9 14.4 0.035 13.9 2.5 3.3 2 2 1 3 3 3 1 Bacillus haemolytic enterotoxin (HBL) CCDC144C PF14915.6 gi|347524181|ref|YP_004781751.1| - 0.0086 15.2 5.2 0.029 13.5 0.3 2.3 1 1 0 2 2 2 1 CCDC144C protein coiled-coil region Laminin_II PF06009.12 gi|347524181|ref|YP_004781751.1| - 0.0092 16.0 26.7 0.38 10.8 2.6 3.4 1 1 2 3 3 3 2 Laminin Domain II Fib_alpha PF08702.10 gi|347524181|ref|YP_004781751.1| - 0.014 15.6 6.1 0.63 10.2 0.6 3.2 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Transcrip_act PF04949.13 gi|347524181|ref|YP_004781751.1| - 0.021 14.7 2.5 0.27 11.1 0.2 2.3 2 0 0 2 2 2 0 Transcriptional activator DUF16 PF01519.16 gi|347524181|ref|YP_004781751.1| - 0.023 15.2 2.6 1.5 9.3 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function DUF16 COG2 PF06148.11 gi|347524181|ref|YP_004781751.1| - 0.026 14.6 9.0 2.2 8.4 0.3 4.1 1 1 3 4 4 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Tektin PF03148.14 gi|347524181|ref|YP_004781751.1| - 0.028 13.2 4.7 0.17 10.6 0.1 2.8 2 1 1 3 3 3 0 Tektin family BLOC1_2 PF10046.9 gi|347524181|ref|YP_004781751.1| - 0.036 14.4 8.9 0.35 11.2 1.4 3.6 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0184 PF03670.13 gi|347524181|ref|YP_004781751.1| - 0.037 14.4 2.2 16 6.0 0.1 3.7 2 2 1 4 4 3 0 Uncharacterised protein family (UPF0184) Syntaxin_2 PF14523.6 gi|347524181|ref|YP_004781751.1| - 0.038 14.4 5.2 0.83 10.1 0.3 2.8 2 1 0 2 2 2 0 Syntaxin-like protein EMP24_GP25L PF01105.24 gi|347524181|ref|YP_004781751.1| - 0.043 13.8 3.5 0.22 11.5 0.3 3.3 2 2 0 2 2 2 0 emp24/gp25L/p24 family/GOLD HIP1_clath_bdg PF16515.5 gi|347524181|ref|YP_004781751.1| - 0.051 14.2 4.9 4.1 8.1 0.2 3.6 1 1 2 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 LXG PF04740.12 gi|347524181|ref|YP_004781751.1| - 0.051 13.3 14.1 0.064 13.0 6.3 2.4 1 1 1 2 2 2 0 LXG domain of WXG superfamily Atg14 PF10186.9 gi|347524181|ref|YP_004781751.1| - 0.063 12.4 3.4 1.5 7.8 0.8 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3450 PF11932.8 gi|347524181|ref|YP_004781751.1| - 0.076 12.3 7.9 0.24 10.7 0.4 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) FH2 PF02181.23 gi|347524181|ref|YP_004781751.1| - 0.08 12.1 6.6 0.47 9.5 0.8 2.4 1 1 0 2 2 2 0 Formin Homology 2 Domain Fez1 PF06818.15 gi|347524181|ref|YP_004781751.1| - 0.082 13.4 3.5 0.084 13.3 1.5 1.9 1 1 1 2 2 2 0 Fez1 Leu_zip PF15294.6 gi|347524181|ref|YP_004781751.1| - 0.088 12.3 8.1 0.68 9.4 2.1 2.4 1 1 0 2 2 2 0 Leucine zipper DUF3502 PF12010.8 gi|347524181|ref|YP_004781751.1| - 0.1 13.2 6.2 0.31 11.7 1.4 2.9 1 1 0 2 2 2 0 Domain of unknown function (DUF3502) Allexi_40kDa PF05549.11 gi|347524181|ref|YP_004781751.1| - 0.12 11.9 8.3 0.99 8.9 0.7 2.6 1 1 0 2 2 2 0 Allexivirus 40kDa protein DUF1640 PF07798.11 gi|347524181|ref|YP_004781751.1| - 0.12 12.4 6.2 0.96 9.5 1.6 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) TBCC_N PF16752.5 gi|347524181|ref|YP_004781751.1| - 0.12 12.8 8.2 3 8.3 0.5 3.5 1 1 2 4 4 4 0 Tubulin-specific chaperone C N-terminal domain Cob_adeno_trans PF01923.18 gi|347524181|ref|YP_004781751.1| - 0.15 12.2 11.3 0.37 10.9 0.6 3.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Prefoldin_2 PF01920.20 gi|347524181|ref|YP_004781751.1| - 0.15 12.0 3.2 31 4.6 0.2 3.5 2 1 1 3 3 3 0 Prefoldin subunit HAP1_N PF04849.13 gi|347524181|ref|YP_004781751.1| - 0.15 11.2 0.3 4.7 6.3 0.1 2.1 2 0 0 2 2 2 0 HAP1 N-terminal conserved region YojJ PF10372.9 gi|347524181|ref|YP_004781751.1| - 0.18 11.9 0.5 20 5.3 0.1 3.4 2 2 2 4 4 4 0 Bacterial membrane-spanning protein N-terminus COG5 PF10392.9 gi|347524181|ref|YP_004781751.1| - 0.2 11.8 7.5 2.1 8.6 0.6 3.0 1 1 0 2 2 2 0 Golgi transport complex subunit 5 TPR_MLP1_2 PF07926.12 gi|347524181|ref|YP_004781751.1| - 0.21 11.6 11.5 1.1 9.4 3.9 3.3 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein DHC_N1 PF08385.12 gi|347524181|ref|YP_004781751.1| - 0.22 10.1 0.0 0.42 9.2 0.0 1.4 1 1 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 Tropomyosin_1 PF12718.7 gi|347524181|ref|YP_004781751.1| - 0.23 11.6 7.0 0.62 10.2 0.6 2.7 2 1 0 2 2 2 0 Tropomyosin like XhlA PF10779.9 gi|347524181|ref|YP_004781751.1| - 0.25 11.6 9.0 2.2 8.5 0.5 4.2 2 2 2 4 4 4 0 Haemolysin XhlA Rx_N PF18052.1 gi|347524181|ref|YP_004781751.1| - 0.27 11.5 3.8 12 6.3 0.1 3.6 1 1 3 4 4 4 0 Rx N-terminal domain Rab5-bind PF09311.11 gi|347524181|ref|YP_004781751.1| - 0.28 10.5 5.2 0.47 9.8 5.2 1.3 1 0 0 1 1 1 0 Rabaptin-like protein AIP3 PF03915.13 gi|347524181|ref|YP_004781751.1| - 0.34 9.9 15.7 0.84 8.7 15.5 1.6 1 1 0 1 1 1 0 Actin interacting protein 3 APG17 PF04108.12 gi|347524181|ref|YP_004781751.1| - 0.36 9.9 7.7 13 4.8 7.7 2.3 1 1 0 1 1 1 0 Autophagy protein Apg17 TMPIT PF07851.13 gi|347524181|ref|YP_004781751.1| - 0.38 10.0 3.4 8.7 5.5 0.1 2.7 1 1 2 3 3 3 0 TMPIT-like protein DUF885 PF05960.11 gi|347524181|ref|YP_004781751.1| - 0.46 10.1 7.9 0.83 9.2 7.9 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) CREPT PF16566.5 gi|347524181|ref|YP_004781751.1| - 0.48 10.6 1.4 11 6.2 0.3 2.5 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour GCN5L1 PF06320.13 gi|347524181|ref|YP_004781751.1| - 0.75 10.0 9.9 3.8 7.7 0.6 2.6 2 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Syntaxin PF00804.25 gi|347524181|ref|YP_004781751.1| - 0.78 9.4 7.9 0.83 9.3 4.3 2.6 1 1 2 3 3 3 0 Syntaxin DUF948 PF06103.11 gi|347524181|ref|YP_004781751.1| - 0.83 9.9 31.7 2.5 8.4 2.4 5.0 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) WXG100 PF06013.12 gi|347524181|ref|YP_004781751.1| - 0.98 9.7 7.9 4.6 7.5 0.6 4.4 2 2 2 4 4 4 0 Proteins of 100 residues with WXG SHE3 PF17078.5 gi|347524181|ref|YP_004781751.1| - 1 9.0 2.9 7.2 6.3 0.3 2.4 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 MCPsignal PF00015.21 gi|347524181|ref|YP_004781751.1| - 1.1 9.1 34.0 0.082 12.7 6.7 3.6 1 1 2 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain MscS_porin PF12795.7 gi|347524181|ref|YP_004781751.1| - 2.6 7.5 4.1 3 7.3 0.2 2.3 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF4618 PF15397.6 gi|347524181|ref|YP_004781751.1| - 2.9 7.3 3.9 64 2.8 3.7 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) DUF3829 PF12889.7 gi|347524181|ref|YP_004781751.1| - 2.9 7.3 11.1 0.48 9.9 3.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) DUF2408 PF10303.9 gi|347524181|ref|YP_004781751.1| - 3.6 8.2 6.7 17 6.0 0.2 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Syntaxin-6_N PF09177.11 gi|347524181|ref|YP_004781751.1| - 3.7 8.2 9.6 3.8 8.1 0.7 3.1 1 1 0 2 2 2 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|347524181|ref|YP_004781751.1| - 3.8 7.8 14.8 9.6 6.5 0.5 3.4 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Phasin PF05597.11 gi|347524181|ref|YP_004781751.1| - 4.2 7.4 17.8 0.54 10.3 5.7 3.5 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) CENP-Q PF13094.6 gi|347524181|ref|YP_004781751.1| - 4.7 7.4 6.8 15 5.7 0.1 2.8 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit THOC7 PF05615.13 gi|347524181|ref|YP_004781751.1| - 5 7.4 7.7 26 5.1 0.4 2.4 1 1 1 2 2 2 0 Tho complex subunit 7 Mer2 PF09074.10 gi|347524181|ref|YP_004781751.1| - 5.6 6.7 11.5 2.3 8.0 3.0 2.7 1 1 1 2 2 2 0 Mer2 LPP PF04728.13 gi|347524181|ref|YP_004781751.1| - 7.5 7.0 24.9 6.3 7.3 1.0 6.3 2 2 3 6 6 5 0 Lipoprotein leucine-zipper DUF4455 PF14643.6 gi|347524181|ref|YP_004781751.1| - 7.8 5.0 5.7 9.3 4.8 0.4 2.4 1 1 1 3 3 3 0 Domain of unknown function (DUF4455) Lectin_N PF03954.14 gi|347524181|ref|YP_004781751.1| - 8.6 6.1 10.2 11 5.8 0.5 3.3 3 1 1 4 4 3 0 Hepatic lectin, N-terminal domain BshC PF10079.9 gi|347524181|ref|YP_004781751.1| - 9.8 4.8 6.8 8.4 5.0 2.1 2.2 1 1 0 2 2 2 0 Bacillithiol biosynthesis BshC AAA_10 PF12846.7 gi|347524185|ref|YP_004781755.1| - 1.9e-07 30.3 0.0 0.0079 15.2 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.12 gi|347524185|ref|YP_004781755.1| - 2.1e-05 23.3 0.0 0.0023 16.6 0.0 2.7 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|347524185|ref|YP_004781755.1| - 0.00085 18.3 0.0 0.71 8.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|347524185|ref|YP_004781755.1| - 0.0022 18.0 0.0 0.0054 16.7 0.0 1.6 1 1 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_30 PF13604.6 gi|347524185|ref|YP_004781755.1| - 0.0095 15.7 0.0 0.087 12.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|347524185|ref|YP_004781755.1| - 0.013 16.0 0.0 0.27 11.7 0.0 2.5 2 1 0 2 2 2 0 ABC transporter AAA_22 PF13401.6 gi|347524185|ref|YP_004781755.1| - 0.022 15.0 0.0 0.99 9.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|347524185|ref|YP_004781755.1| - 0.025 14.4 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|347524185|ref|YP_004781755.1| - 0.032 14.8 0.0 0.078 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|347524185|ref|YP_004781755.1| - 0.14 11.8 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Ribosomal_L2_C PF03947.18 gi|347524186|ref|YP_004781756.1| - 1.9e-44 150.9 0.8 2.6e-44 150.5 0.8 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|347524186|ref|YP_004781756.1| - 3.1e-10 39.9 0.0 9.8e-10 38.3 0.0 2.0 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|347524187|ref|YP_004781757.1| - 3.3e-35 119.8 0.5 4.3e-35 119.4 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|347524187|ref|YP_004781757.1| - 0.064 13.8 0.7 0.11 13.0 0.7 1.4 1 0 0 1 1 1 0 bZIP Maf transcription factor Methyltransf_11 PF08241.12 gi|347524188|ref|YP_004781758.1| - 1.2e-12 48.2 0.1 1.8e-12 47.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|347524188|ref|YP_004781758.1| - 1.8e-09 38.2 0.1 2.7e-09 37.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|347524188|ref|YP_004781758.1| - 4.6e-06 26.1 0.0 5.4e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|347524188|ref|YP_004781758.1| - 0.00032 20.6 0.1 0.0056 16.5 0.1 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 gi|347524188|ref|YP_004781758.1| - 0.026 14.2 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 ATP_bind_3 PF01171.20 gi|347524189|ref|YP_004781759.1| - 1.5e-13 50.9 0.0 3.9e-13 49.5 0.0 1.6 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|347524189|ref|YP_004781759.1| - 0.001 17.9 0.0 0.0016 17.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|347524189|ref|YP_004781759.1| - 0.0038 16.8 0.0 0.0055 16.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|347524189|ref|YP_004781759.1| - 0.0061 16.6 0.0 0.0097 16.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|347524189|ref|YP_004781759.1| - 6 6.5 11.1 1.5 8.4 2.1 3.1 3 0 0 3 3 3 0 Zinc-ribbon VWA_CoxE PF05762.14 gi|347524190|ref|YP_004781760.1| - 2.4e-17 63.1 3.8 5.3e-17 62.0 3.8 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|347524190|ref|YP_004781760.1| - 0.0041 17.8 0.2 0.04 14.6 0.1 2.8 2 1 0 2 2 2 1 von Willebrand factor type A domain DinB_2 PF12867.7 gi|347524190|ref|YP_004781760.1| - 0.04 14.4 0.8 0.04 14.4 0.8 4.0 3 2 1 4 4 4 0 DinB superfamily MnmE_helical PF12631.7 gi|347524190|ref|YP_004781760.1| - 0.51 10.5 3.5 2.6 8.2 0.1 2.4 2 1 0 2 2 2 0 MnmE helical domain AAA_5 PF07728.14 gi|347524191|ref|YP_004781761.1| - 1.5e-17 63.9 0.0 3.3e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|347524191|ref|YP_004781761.1| - 0.00013 21.8 0.0 0.0054 16.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|347524191|ref|YP_004781761.1| - 0.00057 20.3 0.0 0.0031 17.9 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|347524191|ref|YP_004781761.1| - 0.0015 18.2 0.3 1.9 8.2 0.1 2.7 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_18 PF13238.6 gi|347524191|ref|YP_004781761.1| - 0.0028 18.2 0.0 0.0093 16.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|347524191|ref|YP_004781761.1| - 0.004 17.6 0.0 0.013 15.9 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.13 gi|347524191|ref|YP_004781761.1| - 0.0045 16.2 0.0 0.0079 15.4 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_30 PF13604.6 gi|347524191|ref|YP_004781761.1| - 0.013 15.3 0.1 0.063 13.0 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_lid_2 PF17863.1 gi|347524191|ref|YP_004781761.1| - 0.021 14.6 0.6 0.052 13.4 0.6 1.7 1 0 0 1 1 1 0 AAA lid domain AAA_7 PF12775.7 gi|347524191|ref|YP_004781761.1| - 0.024 14.2 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|347524191|ref|YP_004781761.1| - 0.029 13.8 0.1 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_6 PF12774.7 gi|347524191|ref|YP_004781761.1| - 0.066 12.2 0.0 0.12 11.3 0.0 1.5 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_19 PF13245.6 gi|347524191|ref|YP_004781761.1| - 0.074 13.4 0.8 0.93 9.8 0.1 2.5 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|347524191|ref|YP_004781761.1| - 0.24 11.2 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SS_PulS_OutS PF09691.10 gi|347524191|ref|YP_004781761.1| - 0.24 11.6 0.0 0.44 10.7 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system pilotin lipoprotein (PulS_OutS) DUF5110 PF17137.4 gi|347524192|ref|YP_004781762.1| - 0.073 13.4 0.7 1.1 9.6 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5110) tRNA-synt_1 PF00133.22 gi|347524193|ref|YP_004781763.1| - 2.5e-176 587.5 0.0 3.3e-176 587.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|347524193|ref|YP_004781763.1| - 6.5e-34 117.1 0.7 1.3e-33 116.1 0.7 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|347524193|ref|YP_004781763.1| - 4.5e-15 55.3 0.0 7.8e-05 21.6 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|347524193|ref|YP_004781763.1| - 0.0026 17.3 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|347524193|ref|YP_004781763.1| - 0.012 14.9 0.0 0.033 13.5 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain zinc_ribbon_2 PF13240.6 gi|347524193|ref|YP_004781763.1| - 0.062 13.0 4.9 13 5.7 0.0 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|347524193|ref|YP_004781763.1| - 0.066 13.3 4.5 1 9.6 1.9 3.2 2 1 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|347524193|ref|YP_004781763.1| - 0.12 12.4 0.9 16 5.6 0.1 2.9 3 0 0 3 3 3 0 Double zinc ribbon Mu-like_Com PF10122.9 gi|347524193|ref|YP_004781763.1| - 0.16 11.4 1.4 14 5.2 0.1 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com Rpr2 PF04032.16 gi|347524193|ref|YP_004781763.1| - 0.21 11.9 1.1 0.56 10.5 0.0 2.3 3 0 0 3 3 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-TFIIB PF13453.6 gi|347524193|ref|YP_004781763.1| - 0.42 10.0 2.9 12 5.3 0.0 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn_ribbon_SprT PF17283.2 gi|347524193|ref|YP_004781763.1| - 1.1 9.3 3.6 25 4.9 0.2 3.3 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|347524193|ref|YP_004781763.1| - 1.4 8.5 5.5 25 4.6 0.0 3.6 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-IS66 PF13005.7 gi|347524193|ref|YP_004781763.1| - 1.6 9.2 4.0 56 4.2 0.2 3.5 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 PhnA_Zn_Ribbon PF08274.12 gi|347524193|ref|YP_004781763.1| - 2 8.4 3.2 16 5.6 0.2 3.1 3 0 0 3 3 3 0 PhnA Zinc-Ribbon DUF1610 PF07754.11 gi|347524193|ref|YP_004781763.1| - 7.4 6.6 6.1 8.3 6.5 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) CxxCxxCC PF03692.15 gi|347524195|ref|YP_004781765.1| - 1.8e-08 34.9 0.1 3.6e-08 34.0 0.1 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Methyltrn_RNA_3 PF02598.17 gi|347524197|ref|YP_004781767.1| - 2.6e-57 194.5 0.0 3e-57 194.3 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase SPOUT_MTase_2 PF14419.6 gi|347524197|ref|YP_004781767.1| - 1.8e-06 27.4 0.0 5.6e-06 25.8 0.0 1.7 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP SpoU_methylase PF00588.19 gi|347524197|ref|YP_004781767.1| - 0.0018 18.5 0.0 0.056 13.6 0.0 2.2 2 0 0 2 2 2 1 SpoU rRNA Methylase family DUF2122 PF09895.9 gi|347524197|ref|YP_004781767.1| - 0.043 14.2 0.3 0.41 11.1 0.0 2.4 3 0 0 3 3 3 0 RecB-family nuclease (DUF2122) BILBO1_N PF18281.1 gi|347524197|ref|YP_004781767.1| - 0.13 12.7 0.0 0.22 11.9 0.0 1.3 1 0 0 1 1 1 0 BILBO1 N-terminal domain Ribosomal_L3 PF00297.22 gi|347524198|ref|YP_004781768.1| - 5.4e-83 279.0 0.0 6.3e-83 278.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|347524199|ref|YP_004781769.1| - 8.2e-42 143.1 0.2 1e-41 142.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|347524200|ref|YP_004781770.1| - 1e-21 77.1 2.0 7.8e-21 74.2 2.0 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 NKWYS PF10364.9 gi|347524200|ref|YP_004781770.1| - 0.06 13.5 0.0 0.069 13.3 0.0 1.0 1 0 0 1 1 1 0 Putative capsular polysaccharide synthesis protein Ribosomal_L22 PF00237.19 gi|347524201|ref|YP_004781771.1| - 5.4e-28 97.3 0.2 6.7e-28 96.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|347524202|ref|YP_004781772.1| - 5.6e-21 74.9 3.6 1.8e-20 73.2 1.9 2.3 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|347524202|ref|YP_004781772.1| - 8.4e-13 48.0 0.6 4.2e-12 45.7 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|347524202|ref|YP_004781772.1| - 0.00038 20.3 0.3 0.0015 18.3 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|347524202|ref|YP_004781772.1| - 0.02 14.7 0.1 0.02 14.7 0.1 2.3 3 0 0 3 3 3 0 KH domain Ribosomal_L29 PF00831.23 gi|347524203|ref|YP_004781773.1| - 5.7e-22 77.5 2.2 7.5e-22 77.1 2.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein WHIM1 PF15612.6 gi|347524203|ref|YP_004781773.1| - 0.032 13.8 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 UPF0086 PF01868.16 gi|347524204|ref|YP_004781774.1| - 7.8e-16 57.8 0.3 9.7e-16 57.5 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 DUF5036 PF16439.5 gi|347524204|ref|YP_004781774.1| - 0.053 13.2 0.0 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5036) Ribosomal_S17 PF00366.20 gi|347524205|ref|YP_004781775.1| - 1.8e-27 95.2 1.3 2.3e-27 94.9 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|347524205|ref|YP_004781775.1| - 2e-05 24.9 0.0 4.3e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal zf-C3H1 PF10650.9 gi|347524205|ref|YP_004781775.1| - 0.39 10.5 1.2 0.68 9.7 1.2 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain Ribosomal_L14 PF00238.19 gi|347524206|ref|YP_004781776.1| - 1.3e-39 135.0 0.5 1.7e-39 134.7 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|347524207|ref|YP_004781777.1| - 2e-32 111.5 0.6 2.6e-32 111.1 0.6 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|347524207|ref|YP_004781777.1| - 1.9e-05 24.4 1.4 1.9e-05 24.4 1.4 1.8 2 0 0 2 2 2 1 KOW motif HIG_1_N PF04588.13 gi|347524207|ref|YP_004781777.1| - 0.005 17.0 0.5 0.005 17.0 0.5 1.5 2 0 0 2 2 2 1 Hypoxia induced protein conserved region TetR_C_24 PF17932.1 gi|347524207|ref|YP_004781777.1| - 0.068 13.4 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Ribosomal_S4e PF00900.20 gi|347524208|ref|YP_004781778.1| - 3.2e-26 91.0 0.0 6e-26 90.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|347524208|ref|YP_004781778.1| - 7.5e-16 58.0 4.3 1.2e-15 57.3 4.3 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|347524208|ref|YP_004781778.1| - 7.6e-14 51.2 1.2 8.8e-14 51.0 0.1 1.8 2 0 0 2 2 2 1 S4 domain 40S_S4_C PF16121.5 gi|347524208|ref|YP_004781778.1| - 2.6e-09 36.6 0.0 5.2e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 40S ribosomal protein S4 C-terminus KOW PF00467.29 gi|347524208|ref|YP_004781778.1| - 0.00093 19.1 1.8 0.0031 17.4 1.8 2.0 1 0 0 1 1 1 1 KOW motif Ribosomal_L5_C PF00673.21 gi|347524209|ref|YP_004781779.1| - 5.5e-24 84.2 0.0 9.7e-24 83.4 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|347524209|ref|YP_004781779.1| - 5.3e-22 77.9 0.2 1e-21 77.0 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|347524210|ref|YP_004781780.1| - 1.4e-11 44.0 4.6 1.5e-11 43.8 4.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-HYPF PF07503.12 gi|347524210|ref|YP_004781780.1| - 0.035 13.9 1.9 0.68 9.8 0.4 2.1 2 0 0 2 2 2 0 HypF finger DUF1451 PF07295.11 gi|347524210|ref|YP_004781780.1| - 0.069 13.2 0.3 0.082 12.9 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Ribosomal_S8 PF00410.19 gi|347524211|ref|YP_004781781.1| - 1.2e-26 93.1 0.0 1.8e-26 92.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein S8 2-Hacid_dh_C PF02826.19 gi|347524212|ref|YP_004781782.1| - 7.9e-65 217.5 0.0 1.2e-64 217.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|347524212|ref|YP_004781782.1| - 1.8e-33 115.0 0.0 2.1e-33 114.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|347524212|ref|YP_004781782.1| - 5e-09 35.9 0.0 1.2e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|347524212|ref|YP_004781782.1| - 1.2e-08 35.3 0.1 3.3e-08 33.9 0.0 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|347524212|ref|YP_004781782.1| - 2.1e-06 27.9 0.0 6.7e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|347524212|ref|YP_004781782.1| - 6e-06 25.7 0.0 4.5e-05 22.8 0.0 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|347524212|ref|YP_004781782.1| - 6.7e-06 26.4 0.1 0.009 16.3 0.0 3.2 2 1 1 3 3 3 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|347524212|ref|YP_004781782.1| - 1.1e-05 26.0 0.2 0.00013 22.4 0.0 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|347524212|ref|YP_004781782.1| - 0.00099 19.0 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|347524212|ref|YP_004781782.1| - 0.0017 18.5 0.0 0.017 15.2 0.0 2.3 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|347524212|ref|YP_004781782.1| - 0.0027 18.1 0.5 0.016 15.6 0.0 2.4 3 0 0 3 3 3 1 Putative NAD(P)-binding PrpR_N PF06506.11 gi|347524212|ref|YP_004781782.1| - 0.004 16.8 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 2 Propionate catabolism activator PDH PF02153.17 gi|347524212|ref|YP_004781782.1| - 0.011 14.7 0.4 0.073 12.1 0.0 2.3 2 1 1 3 3 3 0 Prephenate dehydrogenase GFO_IDH_MocA PF01408.22 gi|347524212|ref|YP_004781782.1| - 0.014 16.2 0.0 0.034 15.0 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold XdhC_C PF13478.6 gi|347524212|ref|YP_004781782.1| - 0.018 15.5 0.0 0.035 14.6 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|347524212|ref|YP_004781782.1| - 0.05 13.9 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain ADH_zinc_N PF00107.26 gi|347524212|ref|YP_004781782.1| - 0.062 13.3 0.0 0.16 12.0 0.0 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase ApbA PF02558.16 gi|347524212|ref|YP_004781782.1| - 0.085 12.5 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PALP PF00291.25 gi|347524212|ref|YP_004781782.1| - 0.087 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Ribosomal_L6 PF00347.23 gi|347524213|ref|YP_004781783.1| - 6.4e-29 100.5 15.0 6.7e-17 61.9 4.3 2.2 2 0 0 2 2 2 2 Ribosomal protein L6 DUF1521 PF07481.11 gi|347524213|ref|YP_004781783.1| - 0.069 13.1 0.2 0.17 11.9 0.2 1.7 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1521) Ribosomal_L32e PF01655.18 gi|347524214|ref|YP_004781784.1| - 6.2e-38 129.5 0.3 1e-37 128.9 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|347524215|ref|YP_004781785.1| - 6.1e-60 201.5 9.5 6.7e-60 201.3 9.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ish1 PF10281.9 gi|347524215|ref|YP_004781785.1| - 0.00041 20.6 0.1 0.18 12.1 0.0 3.0 3 0 0 3 3 3 2 Putative stress-responsive nuclear envelope protein HTH_5 PF01022.20 gi|347524215|ref|YP_004781785.1| - 0.21 11.5 0.2 4 7.4 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Ribosomal_L5e PF17144.4 gi|347524216|ref|YP_004781786.1| - 4.6e-31 108.0 1.7 9.8e-23 80.9 0.9 2.5 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|347524216|ref|YP_004781786.1| - 5.1e-10 40.2 0.0 9.5e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|347524216|ref|YP_004781786.1| - 8.7e-05 22.9 0.1 0.00013 22.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|347524217|ref|YP_004781787.1| - 1.2e-25 88.7 0.1 2.4e-25 87.8 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|347524217|ref|YP_004781787.1| - 4.3e-24 84.3 4.5 7.2e-24 83.5 3.1 2.0 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.20 gi|347524218|ref|YP_004781788.1| - 5.3e-15 55.0 0.1 9.7e-15 54.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|347524219|ref|YP_004781789.1| - 2.2e-22 80.1 0.0 2.8e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF2067 PF09840.9 gi|347524219|ref|YP_004781789.1| - 0.02 14.5 0.4 0.033 13.8 0.4 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) SecY PF00344.20 gi|347524220|ref|YP_004781790.1| - 8.2e-54 182.9 15.7 1.3e-53 182.3 15.7 1.3 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|347524220|ref|YP_004781790.1| - 0.0012 18.7 0.6 0.0039 17.0 0.6 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p PIG-Y PF15159.6 gi|347524220|ref|YP_004781790.1| - 0.92 10.5 0.0 0.92 10.5 0.0 3.1 3 0 0 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y AAA_17 PF13207.6 gi|347524221|ref|YP_004781791.1| - 1.2e-36 126.1 0.1 1.8e-36 125.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|347524221|ref|YP_004781791.1| - 7e-12 46.0 0.0 1e-11 45.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|347524221|ref|YP_004781791.1| - 7.7e-08 32.2 0.1 1.5e-07 31.3 0.0 1.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|347524221|ref|YP_004781791.1| - 2e-05 24.4 0.3 2e-05 24.4 0.3 1.6 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|347524221|ref|YP_004781791.1| - 0.00012 22.0 1.4 0.00023 21.1 0.6 1.8 1 1 0 2 2 2 1 NTPase KTI12 PF08433.10 gi|347524221|ref|YP_004781791.1| - 0.00018 21.1 0.0 0.00044 19.8 0.0 1.6 1 1 0 1 1 1 1 Chromatin associated protein KTI12 ATP_bind_1 PF03029.17 gi|347524221|ref|YP_004781791.1| - 0.00018 21.4 0.1 0.0013 18.5 0.2 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|347524221|ref|YP_004781791.1| - 0.00022 21.4 0.0 0.00061 20.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|347524221|ref|YP_004781791.1| - 0.00032 21.0 0.1 0.00063 20.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|347524221|ref|YP_004781791.1| - 0.00039 20.4 0.1 0.00055 19.9 0.1 1.4 1 0 0 1 1 1 1 NACHT domain CLP1_P PF16575.5 gi|347524221|ref|YP_004781791.1| - 0.00045 20.1 0.1 0.0061 16.4 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|347524221|ref|YP_004781791.1| - 0.00053 20.4 0.2 0.00077 19.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain 6PF2K PF01591.18 gi|347524221|ref|YP_004781791.1| - 0.0014 18.0 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 6-phosphofructo-2-kinase MeaB PF03308.16 gi|347524221|ref|YP_004781791.1| - 0.0024 16.9 0.3 0.0047 16.0 0.3 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|347524221|ref|YP_004781791.1| - 0.0037 16.9 0.1 0.0074 15.9 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|347524221|ref|YP_004781791.1| - 0.0042 16.8 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|347524221|ref|YP_004781791.1| - 0.0058 16.9 0.1 0.013 15.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|347524221|ref|YP_004781791.1| - 0.0071 16.0 0.3 0.031 14.0 0.3 2.0 1 1 0 1 1 1 1 Thymidylate kinase AAA_19 PF13245.6 gi|347524221|ref|YP_004781791.1| - 0.0079 16.5 1.5 0.018 15.4 1.5 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347524221|ref|YP_004781791.1| - 0.008 16.6 0.8 0.019 15.4 0.8 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|347524221|ref|YP_004781791.1| - 0.0088 16.1 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|347524221|ref|YP_004781791.1| - 0.016 15.1 0.1 0.035 14.0 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DAP3 PF10236.9 gi|347524221|ref|YP_004781791.1| - 0.019 14.2 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.23 gi|347524221|ref|YP_004781791.1| - 0.03 14.4 0.1 0.097 12.8 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2075 PF09848.9 gi|347524221|ref|YP_004781791.1| - 0.047 12.9 0.1 0.074 12.3 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|347524221|ref|YP_004781791.1| - 0.098 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ribosomal_L34e PF01199.18 gi|347524223|ref|YP_004781793.1| - 7.3e-26 90.3 0.1 9.7e-26 89.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.6 gi|347524223|ref|YP_004781793.1| - 0.05 13.5 0.2 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Cytidylate_kin2 PF13189.6 gi|347524224|ref|YP_004781794.1| - 5.4e-22 78.8 0.3 1.9e-12 47.7 0.3 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|347524224|ref|YP_004781794.1| - 5.2e-15 55.7 1.4 1.4e-06 28.2 0.0 2.2 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|347524224|ref|YP_004781794.1| - 1.3e-14 54.9 0.0 2.1e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|347524224|ref|YP_004781794.1| - 3.4e-14 53.4 0.0 5.4e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|347524224|ref|YP_004781794.1| - 1.6e-06 28.3 0.1 1.6e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain PRK PF00485.18 gi|347524224|ref|YP_004781794.1| - 3.1e-05 23.8 0.4 0.075 12.8 0.0 2.2 1 1 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|347524224|ref|YP_004781794.1| - 0.00011 22.7 0.0 0.00017 22.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|347524224|ref|YP_004781794.1| - 0.00011 22.3 0.1 0.00025 21.1 0.0 1.6 2 0 0 2 2 2 1 Adenylate kinase SKI PF01202.22 gi|347524224|ref|YP_004781794.1| - 0.00021 21.4 0.0 0.0054 16.9 0.0 2.1 2 0 0 2 2 2 1 Shikimate kinase AAA_22 PF13401.6 gi|347524224|ref|YP_004781794.1| - 0.00027 21.2 0.0 0.00043 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|347524224|ref|YP_004781794.1| - 0.00029 21.1 0.0 0.00041 20.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|347524224|ref|YP_004781794.1| - 0.00029 20.5 0.0 0.69 9.6 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase AAA_16 PF13191.6 gi|347524224|ref|YP_004781794.1| - 0.00031 21.2 0.0 0.00055 20.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain dNK PF01712.19 gi|347524224|ref|YP_004781794.1| - 0.00048 20.1 0.0 0.098 12.5 0.0 2.2 2 0 0 2 2 2 1 Deoxynucleoside kinase NACHT PF05729.12 gi|347524224|ref|YP_004781794.1| - 0.0023 17.9 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NTPase_1 PF03266.15 gi|347524224|ref|YP_004781794.1| - 0.0059 16.5 0.0 0.0098 15.8 0.0 1.4 1 0 0 1 1 1 1 NTPase RuvB_N PF05496.12 gi|347524224|ref|YP_004781794.1| - 0.0083 15.9 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|347524224|ref|YP_004781794.1| - 0.009 16.4 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 RNA helicase KTI12 PF08433.10 gi|347524224|ref|YP_004781794.1| - 0.01 15.3 0.0 0.033 13.6 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 TsaE PF02367.17 gi|347524224|ref|YP_004781794.1| - 0.026 14.5 0.0 0.066 13.2 0.0 1.6 1 1 1 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|347524224|ref|YP_004781794.1| - 0.042 13.6 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|347524224|ref|YP_004781794.1| - 0.045 13.7 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|347524224|ref|YP_004781794.1| - 0.046 13.7 0.0 0.085 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CPT PF07931.12 gi|347524224|ref|YP_004781794.1| - 0.053 13.4 0.1 0.36 10.6 0.1 2.1 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein ATP_bind_1 PF03029.17 gi|347524224|ref|YP_004781794.1| - 0.055 13.2 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Thymidylate_kin PF02223.17 gi|347524224|ref|YP_004781794.1| - 0.059 13.0 0.0 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase RHH_1 PF01402.21 gi|347524224|ref|YP_004781794.1| - 0.083 12.9 0.7 0.86 9.6 0.1 2.6 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Viral_helicase1 PF01443.18 gi|347524224|ref|YP_004781794.1| - 0.089 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|347524224|ref|YP_004781794.1| - 0.091 12.5 0.1 0.21 11.3 0.0 1.6 1 1 1 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|347524224|ref|YP_004781794.1| - 0.095 12.1 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|347524224|ref|YP_004781794.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Glyco_transf_88 PF16849.5 gi|347524224|ref|YP_004781794.1| - 0.15 11.0 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 88 AAA_19 PF13245.6 gi|347524224|ref|YP_004781794.1| - 0.15 12.4 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain EFG_II PF14492.6 gi|347524224|ref|YP_004781794.1| - 0.17 12.0 0.0 1.5 9.0 0.0 2.2 1 1 1 2 2 2 0 Elongation Factor G, domain II E3_binding PF02817.17 gi|347524224|ref|YP_004781794.1| - 4.8 7.6 5.8 30 5.1 0.0 4.1 5 0 0 5 5 4 0 e3 binding domain KOW PF00467.29 gi|347524225|ref|YP_004781795.1| - 0.00018 21.3 0.2 0.00041 20.2 0.2 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|347524225|ref|YP_004781795.1| - 0.0024 18.3 0.0 0.0034 17.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 TruB_N PF01509.18 gi|347524226|ref|YP_004781796.1| - 7.8e-25 88.0 0.3 1.5e-16 61.1 0.1 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|347524226|ref|YP_004781796.1| - 2.4e-23 82.0 0.0 4.6e-23 81.1 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|347524226|ref|YP_004781796.1| - 1.1e-19 70.1 2.5 2e-19 69.3 2.5 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|347524226|ref|YP_004781796.1| - 1.5e-16 60.2 0.1 3.5e-16 59.0 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|347524226|ref|YP_004781796.1| - 0.022 15.0 0.0 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 UPF0113 PUA domain hGDE_central PF14702.6 gi|347524226|ref|YP_004781796.1| - 0.22 11.2 0.0 2.3 7.8 0.0 2.0 1 1 0 2 2 2 0 Central domain of human glycogen debranching enzyme EamA PF00892.20 gi|347524227|ref|YP_004781797.1| - 2e-33 115.5 56.7 3.7e-19 69.3 25.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family MTS PF05175.14 gi|347524228|ref|YP_004781798.1| - 1.6e-47 161.2 0.0 1.9e-47 161.0 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|347524228|ref|YP_004781798.1| - 2.7e-16 59.7 0.0 3.7e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|347524228|ref|YP_004781798.1| - 7.4e-14 51.8 0.0 8.6e-14 51.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|347524228|ref|YP_004781798.1| - 8.4e-14 52.0 0.0 1.3e-13 51.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|347524228|ref|YP_004781798.1| - 3.7e-10 39.9 0.0 4.4e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|347524228|ref|YP_004781798.1| - 7.3e-10 39.4 0.0 1.3e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|347524228|ref|YP_004781798.1| - 2.7e-09 37.7 0.0 3.7e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|347524228|ref|YP_004781798.1| - 1.1e-08 35.2 0.0 2.6e-08 34.0 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|347524228|ref|YP_004781798.1| - 1.5e-07 31.1 0.0 2.3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|347524228|ref|YP_004781798.1| - 8.9e-07 28.8 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase UPF0020 PF01170.18 gi|347524228|ref|YP_004781798.1| - 1.2e-06 28.4 0.0 9.2e-06 25.5 0.0 2.0 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|347524228|ref|YP_004781798.1| - 1e-05 25.4 0.0 1.3e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|347524228|ref|YP_004781798.1| - 6e-05 22.4 0.1 0.00016 21.1 0.1 1.7 1 1 0 1 1 1 1 O-methyltransferase domain Cons_hypoth95 PF03602.15 gi|347524228|ref|YP_004781798.1| - 0.00026 20.7 0.0 0.00035 20.3 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|347524228|ref|YP_004781798.1| - 0.00056 19.3 0.0 0.00065 19.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|347524228|ref|YP_004781798.1| - 0.0012 18.2 0.0 0.0014 17.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TRM PF02005.16 gi|347524228|ref|YP_004781798.1| - 0.0026 17.0 0.0 0.0029 16.8 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase N6_Mtase PF02384.16 gi|347524228|ref|YP_004781798.1| - 0.0029 16.9 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase GidB PF02527.15 gi|347524228|ref|YP_004781798.1| - 0.0042 16.4 0.0 0.0056 16.0 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_4 PF02390.17 gi|347524228|ref|YP_004781798.1| - 0.0061 16.0 0.0 0.012 15.0 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.6 gi|347524228|ref|YP_004781798.1| - 0.0068 16.4 0.0 0.0095 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|347524228|ref|YP_004781798.1| - 0.0097 15.2 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain NodS PF05401.11 gi|347524228|ref|YP_004781798.1| - 0.012 15.2 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.11 gi|347524228|ref|YP_004781798.1| - 0.026 13.5 0.0 0.046 12.7 0.0 1.4 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|347524228|ref|YP_004781798.1| - 0.03 14.1 0.1 0.041 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|347524228|ref|YP_004781798.1| - 0.13 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW ILVD_EDD PF00920.21 gi|347524229|ref|YP_004781799.1| - 6.5e-199 661.8 0.4 7.3e-199 661.7 0.4 1.0 1 0 0 1 1 1 1 Dehydratase family HMGL-like PF00682.19 gi|347524230|ref|YP_004781800.1| - 1.7e-94 316.3 2.5 1.7e-94 316.3 2.5 1.6 2 0 0 2 2 2 1 HMGL-like AP_endonuc_2 PF01261.24 gi|347524230|ref|YP_004781800.1| - 0.001 18.5 0.2 0.0026 17.2 0.2 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Pro_dh PF01619.18 gi|347524230|ref|YP_004781800.1| - 0.018 14.6 1.0 0.93 9.0 0.1 2.2 2 0 0 2 2 2 0 Proline dehydrogenase TPP_enzyme_N PF02776.18 gi|347524231|ref|YP_004781801.1| - 4.2e-51 173.0 0.5 1.9e-50 170.9 0.4 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|347524231|ref|YP_004781801.1| - 1.8e-46 157.3 0.0 4.3e-46 156.0 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|347524231|ref|YP_004781801.1| - 2.9e-42 144.1 0.0 2e-40 138.1 0.0 2.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACT_5 PF13710.6 gi|347524232|ref|YP_004781802.1| - 3.2e-07 30.1 0.1 4.2e-07 29.7 0.1 1.2 1 0 0 1 1 1 1 ACT domain SPC12 PF06645.13 gi|347524233|ref|YP_004781803.1| - 0.055 13.5 0.2 0.09 12.9 0.2 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) NTF2 PF02136.20 gi|347524233|ref|YP_004781803.1| - 0.19 12.3 0.0 0.25 11.9 0.0 1.3 1 1 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain PCNA_N PF00705.18 gi|347524234|ref|YP_004781804.1| - 2.1e-15 56.5 0.2 2.7e-14 53.0 0.0 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|347524234|ref|YP_004781804.1| - 1.9e-14 53.9 0.1 4.8e-10 39.7 0.0 2.4 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|347524234|ref|YP_004781804.1| - 4.2e-07 29.3 0.0 0.022 13.8 0.0 2.0 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|347524234|ref|YP_004781804.1| - 5.9e-05 22.6 0.0 0.00014 21.4 0.0 1.7 1 1 0 1 1 1 1 Rad9 MazE_antitoxin PF04014.18 gi|347524234|ref|YP_004781804.1| - 0.013 15.5 0.1 3.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Hus1 PF04005.12 gi|347524234|ref|YP_004781804.1| - 0.18 10.9 0.0 0.75 8.8 0.0 2.0 1 1 1 2 2 2 0 Hus1-like protein Myco_19_kDa PF05481.12 gi|347524234|ref|YP_004781804.1| - 0.18 12.1 0.5 2.3 8.5 0.1 2.2 1 1 1 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen polyprenyl_synt PF00348.17 gi|347524236|ref|YP_004781806.1| - 5.1e-40 137.1 0.0 6.7e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Pyr_redox_2 PF07992.14 gi|347524237|ref|YP_004781807.1| - 4.7e-07 29.3 0.0 6.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|347524237|ref|YP_004781807.1| - 1.5e-05 24.3 0.2 0.0066 15.6 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|347524237|ref|YP_004781807.1| - 0.00023 20.9 3.7 0.055 13.1 0.8 3.2 1 1 1 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|347524237|ref|YP_004781807.1| - 0.00062 18.7 0.1 0.002 17.1 0.0 1.7 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|347524237|ref|YP_004781807.1| - 0.00077 18.6 0.7 0.0012 18.0 0.3 1.5 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|347524237|ref|YP_004781807.1| - 0.0081 15.4 0.0 0.11 11.7 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|347524237|ref|YP_004781807.1| - 0.0088 14.8 0.2 0.02 13.6 0.2 1.6 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|347524237|ref|YP_004781807.1| - 0.021 14.1 0.1 0.039 13.2 0.1 1.4 1 0 0 1 1 1 0 Thi4 family NAD_binding_8 PF13450.6 gi|347524237|ref|YP_004781807.1| - 0.022 15.0 0.1 0.049 13.9 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|347524237|ref|YP_004781807.1| - 0.39 10.0 1.0 0.61 9.4 1.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase RimK PF08443.11 gi|347524238|ref|YP_004781808.1| - 2.2e-35 122.0 0.0 2.9e-35 121.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|347524238|ref|YP_004781808.1| - 5.9e-20 71.4 0.0 8.4e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Rimk_N PF18030.1 gi|347524238|ref|YP_004781808.1| - 2.2e-08 34.4 0.0 4e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|347524238|ref|YP_004781808.1| - 2e-06 27.2 0.0 0.17 11.1 0.1 3.1 2 1 0 2 2 2 2 YheC/D like ATP-grasp ATP-grasp_3 PF02655.14 gi|347524238|ref|YP_004781808.1| - 3.9e-06 27.0 0.0 6.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|347524238|ref|YP_004781808.1| - 0.00012 21.5 0.0 0.27 10.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Ins134_P3_kin PF05770.11 gi|347524238|ref|YP_004781808.1| - 0.0058 16.2 0.0 0.88 9.0 0.0 2.2 1 1 0 2 2 2 2 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain R2K_3 PF14243.6 gi|347524238|ref|YP_004781808.1| - 0.009 16.0 0.3 0.014 15.4 0.3 1.3 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 Glycos_transf_4 PF00953.21 gi|347524239|ref|YP_004781809.1| - 5.5e-25 88.2 10.9 5.5e-25 88.2 10.9 2.0 3 0 0 3 3 3 1 Glycosyl transferase family 4 Transgly_assoc PF04226.13 gi|347524239|ref|YP_004781809.1| - 0.052 13.8 0.4 0.052 13.8 0.4 3.7 4 0 0 4 4 4 0 Transglycosylase associated protein Gly-zipper_Omp PF13488.6 gi|347524239|ref|YP_004781809.1| - 0.2 11.6 5.8 0.93 9.5 2.3 2.8 2 0 0 2 2 2 0 Glycine zipper PNP_UDP_1 PF01048.20 gi|347524241|ref|YP_004781811.1| - 3.3e-50 170.5 0.0 3.7e-50 170.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HGTP_anticodon PF03129.20 gi|347524243|ref|YP_004781813.1| - 1.2e-22 79.8 0.0 3.4e-22 78.4 0.0 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|347524243|ref|YP_004781813.1| - 7.8e-08 32.5 0.1 2.8e-07 30.7 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Rad50_zn_hook PF04423.14 gi|347524243|ref|YP_004781813.1| - 0.047 13.5 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 Rad50 zinc hook motif Molydop_binding PF01568.21 gi|347524244|ref|YP_004781814.1| - 4.7e-08 33.0 1.0 0.0015 18.5 0.1 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|347524244|ref|YP_004781814.1| - 0.086 13.0 0.4 0.13 12.5 0.4 1.2 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain GTP_cyclohydroI PF01227.22 gi|347524246|ref|YP_004781816.1| - 3.2e-68 228.7 0.1 3.6e-68 228.5 0.1 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 gi|347524246|ref|YP_004781816.1| - 0.002 18.2 0.0 0.0035 17.5 0.0 1.4 1 0 0 1 1 1 1 QueF-like protein PSK_trans_fac PF07704.11 gi|347524246|ref|YP_004781816.1| - 0.013 16.3 2.3 0.85 10.4 0.4 2.5 2 1 0 2 2 2 0 Rv0623-like transcription factor SnoaL_3 PF13474.6 gi|347524246|ref|YP_004781816.1| - 0.081 13.2 0.1 0.43 10.8 0.0 1.9 2 0 0 2 2 2 0 SnoaL-like domain OrfB_Zn_ribbon PF07282.11 gi|347524247|ref|YP_004781817.1| - 0.01 15.7 5.4 0.96 9.4 0.2 2.9 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|347524247|ref|YP_004781817.1| - 0.068 13.2 0.7 0.9 9.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbons DZR PF12773.7 gi|347524247|ref|YP_004781817.1| - 0.088 12.8 2.9 0.2 11.7 0.2 2.5 2 1 0 2 2 2 0 Double zinc ribbon DiS_P_DiS PF06750.13 gi|347524247|ref|YP_004781817.1| - 0.14 12.3 1.0 4.6 7.4 0.2 2.5 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain Cys_rich_CPXG PF14255.6 gi|347524247|ref|YP_004781817.1| - 0.23 11.4 1.5 2.4 8.1 0.5 2.5 2 0 0 2 2 2 0 Cysteine-rich CPXCG Sgf11 PF08209.11 gi|347524247|ref|YP_004781817.1| - 0.32 10.6 0.2 0.32 10.6 0.2 2.9 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.6 gi|347524247|ref|YP_004781817.1| - 0.37 10.3 0.0 0.37 10.3 0.0 3.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|347524247|ref|YP_004781817.1| - 0.46 10.8 2.3 6.1 7.2 0.1 2.8 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|347524247|ref|YP_004781817.1| - 1.3 9.3 6.2 6.5 7.1 0.3 2.9 3 0 0 3 3 3 0 zinc-ribbon Rubredoxin PF00301.20 gi|347524247|ref|YP_004781817.1| - 2 8.5 8.8 75 3.5 0.0 4.1 4 0 0 4 4 4 0 Rubredoxin UPF0547 PF10571.9 gi|347524247|ref|YP_004781817.1| - 2 8.6 9.3 5.7 7.1 0.4 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Auto_anti-p27 PF06677.12 gi|347524247|ref|YP_004781817.1| - 2.5 8.3 12.9 0.094 12.9 4.5 2.6 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_2 PF14445.6 gi|347524247|ref|YP_004781817.1| - 8.7 6.6 7.0 0.71 10.1 1.3 2.1 3 0 0 3 3 2 0 Prokaryotic RING finger family 2 Ycf9 PF01737.17 gi|347524248|ref|YP_004781818.1| - 0.018 14.9 0.4 0.034 14.0 0.0 1.6 2 0 0 2 2 2 0 YCF9 CDP-OH_P_transf PF01066.21 gi|347524249|ref|YP_004781819.1| - 7.4e-10 39.5 2.1 7.4e-10 39.5 2.1 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase ThrE PF06738.12 gi|347524249|ref|YP_004781819.1| - 0.025 13.9 0.3 0.025 13.9 0.3 2.3 3 0 0 3 3 3 0 Putative threonine/serine exporter Phage_tail_APC PF16778.5 gi|347524250|ref|YP_004781820.1| - 0.14 12.1 0.0 0.42 10.5 0.0 1.8 1 0 0 1 1 1 0 Phage tail assembly chaperone protein NucS PF01939.16 gi|347524251|ref|YP_004781821.1| - 3.3e-57 193.5 1.0 4e-57 193.2 1.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_4 PF14281.6 gi|347524251|ref|YP_004781821.1| - 1.2e-05 25.6 0.0 1.6e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N PF04313.14 gi|347524251|ref|YP_004781821.1| - 0.035 14.1 0.1 0.058 13.3 0.1 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Propep_M14 PF02244.16 gi|347524251|ref|YP_004781821.1| - 0.037 14.4 0.0 0.15 12.5 0.0 1.9 2 0 0 2 2 2 0 Carboxypeptidase activation peptide DNA_primase_lrg PF04104.14 gi|347524252|ref|YP_004781822.1| - 1.1e-33 116.8 0.0 1.6e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit FbpA PF05833.11 gi|347524253|ref|YP_004781823.1| - 1.2e-52 179.3 0.1 1.5e-52 178.9 0.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|347524253|ref|YP_004781823.1| - 8.6e-23 81.1 0.0 1.6e-22 80.2 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain H2TH PF06831.14 gi|347524253|ref|YP_004781823.1| - 0.0011 19.0 0.3 0.0078 16.2 0.0 2.5 2 1 1 3 3 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain NFACT-R_2 PF18297.1 gi|347524253|ref|YP_004781823.1| - 0.0011 19.2 0.0 0.0025 18.0 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain CENP-Q PF13094.6 gi|347524253|ref|YP_004781823.1| - 0.0016 18.6 10.0 0.004 17.4 0.6 2.4 2 0 0 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit UPF0242 PF06785.11 gi|347524253|ref|YP_004781823.1| - 0.008 16.3 6.0 0.012 15.7 1.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus DegQ PF08181.11 gi|347524253|ref|YP_004781823.1| - 0.083 13.0 1.1 0.36 11.0 1.1 2.2 1 0 0 1 1 1 0 DegQ (SacQ) family MCU PF04678.13 gi|347524253|ref|YP_004781823.1| - 0.36 10.9 3.4 2.9 8.0 0.2 2.3 2 0 0 2 2 2 0 Mitochondrial calcium uniporter APG6_N PF17675.1 gi|347524253|ref|YP_004781823.1| - 0.67 10.5 19.8 0.23 12.0 3.4 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region PspA_IM30 PF04012.12 gi|347524253|ref|YP_004781823.1| - 1.1 8.8 13.6 4.6 6.8 5.4 2.2 2 0 0 2 2 2 0 PspA/IM30 family AAA_23 PF13476.6 gi|347524253|ref|YP_004781823.1| - 2 8.9 7.9 1.8 9.0 1.0 2.2 2 0 0 2 2 2 0 AAA domain YabA PF06156.13 gi|347524253|ref|YP_004781823.1| - 2.9 8.6 6.3 7 7.3 0.3 2.4 2 0 0 2 2 2 0 Initiation control protein YabA DUF4795 PF16043.5 gi|347524253|ref|YP_004781823.1| - 3.6 7.1 10.3 37 3.8 10.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF16 PF01519.16 gi|347524253|ref|YP_004781823.1| - 4.5 7.8 5.2 2.3 8.7 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 HetR_C PF18460.1 gi|347524253|ref|YP_004781823.1| - 4.6 7.2 7.0 15 5.6 1.7 2.8 2 0 0 2 2 2 0 Heterocyst differentiation regulator C-terminal Hood domain Striatin PF08232.12 gi|347524253|ref|YP_004781823.1| - 5.1 7.7 10.5 0.44 11.1 1.7 2.2 2 0 0 2 2 2 0 Striatin family TcpS PF17456.2 gi|347524253|ref|YP_004781823.1| - 5.3 7.1 7.1 7.1 6.7 0.6 2.5 2 0 0 2 2 2 0 Toxin-coregulated pilus protein S Cep57_CLD PF14073.6 gi|347524253|ref|YP_004781823.1| - 6.5 6.7 16.1 0.66 10.0 5.6 2.2 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 TMF_TATA_bd PF12325.8 gi|347524253|ref|YP_004781823.1| - 9.1 6.5 13.3 10 6.4 0.8 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DNA_pol_B PF00136.21 gi|347524255|ref|YP_004781825.1| - 1.5e-51 175.6 0.0 2.8e-51 174.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|347524255|ref|YP_004781825.1| - 2.5e-29 102.5 0.0 4.6e-29 101.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|347524255|ref|YP_004781825.1| - 6.4e-06 26.3 0.0 2.5e-05 24.3 0.0 2.0 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|347524255|ref|YP_004781825.1| - 0.00015 21.5 0.1 0.00036 20.3 0.1 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF2286 PF10051.9 gi|347524256|ref|YP_004781826.1| - 4.4e-47 159.3 1.7 5.7e-47 158.9 1.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Creatinase_N PF01321.18 gi|347524256|ref|YP_004781826.1| - 0.034 14.8 0.8 0.12 13.1 0.2 2.0 1 1 1 2 2 2 0 Creatinase/Prolidase N-terminal domain Tox-REase-7 PF15649.6 gi|347524256|ref|YP_004781826.1| - 0.053 13.8 0.1 0.72 10.2 0.0 2.3 2 1 0 2 2 2 0 Restriction endonuclease fold toxin 7 HBS1_N PF08938.10 gi|347524256|ref|YP_004781826.1| - 0.15 12.3 1.7 0.72 10.2 0.3 2.2 2 0 0 2 2 2 0 HBS1 N-terminus LZ_Tnp_IS66 PF13007.7 gi|347524256|ref|YP_004781826.1| - 0.25 12.2 3.9 0.43 11.4 3.9 1.5 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain Methyltransf_25 PF13649.6 gi|347524257|ref|YP_004781827.1| - 1.5e-10 41.6 0.0 2e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|347524257|ref|YP_004781827.1| - 4.3e-10 39.6 0.0 6.3e-10 39.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|347524257|ref|YP_004781827.1| - 3.8e-08 33.4 0.0 5.1e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|347524257|ref|YP_004781827.1| - 1.5e-07 31.0 0.0 1.8e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|347524257|ref|YP_004781827.1| - 5.3e-07 29.3 0.0 7.4e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|347524257|ref|YP_004781827.1| - 1.4e-06 28.9 0.0 1.7e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|347524257|ref|YP_004781827.1| - 3.1e-06 26.8 0.0 3.4e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DOT1 PF08123.13 gi|347524257|ref|YP_004781827.1| - 1.8e-05 24.4 0.0 4.4e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Histone methylation protein DOT1 RrnaAD PF00398.20 gi|347524257|ref|YP_004781827.1| - 2.1e-05 23.8 0.0 2.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TrmK PF04816.12 gi|347524257|ref|YP_004781827.1| - 2.9e-05 23.7 0.0 3.7e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase PCMT PF01135.19 gi|347524257|ref|YP_004781827.1| - 5.6e-05 23.0 0.0 7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|347524257|ref|YP_004781827.1| - 0.00011 21.5 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain UPF0020 PF01170.18 gi|347524257|ref|YP_004781827.1| - 0.00015 21.5 0.3 0.009 15.7 0.3 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|347524257|ref|YP_004781827.1| - 0.00027 20.8 0.0 0.00038 20.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|347524257|ref|YP_004781827.1| - 0.0004 20.0 0.0 0.00053 19.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|347524257|ref|YP_004781827.1| - 0.00072 20.3 0.0 0.0011 19.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|347524257|ref|YP_004781827.1| - 0.0062 16.1 0.1 0.0079 15.8 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|347524257|ref|YP_004781827.1| - 0.007 15.7 0.0 0.0077 15.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|347524257|ref|YP_004781827.1| - 0.015 14.9 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|347524257|ref|YP_004781827.1| - 0.1 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_20 PF12147.8 gi|347524257|ref|YP_004781827.1| - 0.13 11.4 0.1 0.17 11.0 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase N6_N4_Mtase PF01555.18 gi|347524257|ref|YP_004781827.1| - 0.15 11.7 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 DNA methylase Methyltransf_32 PF13679.6 gi|347524257|ref|YP_004781827.1| - 0.21 11.6 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Lipoprotein_9 PF03180.14 gi|347524258|ref|YP_004781828.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 NLPA lipoprotein MarR_2 PF12802.7 gi|347524259|ref|YP_004781829.1| - 1.6e-06 27.9 0.1 2.8e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|347524259|ref|YP_004781829.1| - 4.7e-06 26.5 0.1 1.9e-05 24.6 0.1 1.8 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|347524259|ref|YP_004781829.1| - 1.4e-05 24.9 0.1 1.8e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|347524259|ref|YP_004781829.1| - 2.3e-05 24.5 0.0 3.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|347524259|ref|YP_004781829.1| - 6.4e-05 22.5 0.2 8.8e-05 22.1 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|347524259|ref|YP_004781829.1| - 0.00018 20.9 0.0 0.00032 20.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|347524259|ref|YP_004781829.1| - 0.00027 20.6 0.3 0.001 18.8 0.3 1.9 1 1 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.6 gi|347524259|ref|YP_004781829.1| - 0.00032 20.2 0.0 0.00047 19.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|347524259|ref|YP_004781829.1| - 0.00048 20.1 0.1 0.0008 19.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 gi|347524259|ref|YP_004781829.1| - 0.0011 18.8 0.0 0.0017 18.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|347524259|ref|YP_004781829.1| - 0.0022 17.7 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain IF2_N PF04760.15 gi|347524259|ref|YP_004781829.1| - 0.0025 17.6 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_5 PF01022.20 gi|347524259|ref|YP_004781829.1| - 0.0027 17.5 0.0 0.0037 17.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|347524259|ref|YP_004781829.1| - 0.003 17.9 0.0 0.0044 17.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.6 gi|347524259|ref|YP_004781829.1| - 0.003 17.6 0.2 0.0057 16.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|347524259|ref|YP_004781829.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|347524259|ref|YP_004781829.1| - 0.014 15.4 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|347524259|ref|YP_004781829.1| - 0.014 15.2 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_17 PF12728.7 gi|347524259|ref|YP_004781829.1| - 0.02 15.1 0.7 0.025 14.8 0.1 1.7 2 1 0 2 2 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|347524259|ref|YP_004781829.1| - 0.026 14.2 0.0 0.03 14.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MerR PF00376.23 gi|347524259|ref|YP_004781829.1| - 0.031 14.0 0.5 0.1 12.4 0.5 1.9 1 1 0 1 1 1 0 MerR family regulatory protein HTH_IclR PF09339.10 gi|347524259|ref|YP_004781829.1| - 0.033 14.0 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Replic_Relax PF13814.6 gi|347524259|ref|YP_004781829.1| - 0.046 13.8 0.0 0.047 13.7 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation LexA_DNA_bind PF01726.16 gi|347524259|ref|YP_004781829.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.7 gi|347524259|ref|YP_004781829.1| - 0.061 13.4 0.0 0.092 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|347524259|ref|YP_004781829.1| - 0.072 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|347524259|ref|YP_004781829.1| - 0.076 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 S25 ribosomal protein HTH_1 PF00126.27 gi|347524259|ref|YP_004781829.1| - 0.076 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|347524259|ref|YP_004781829.1| - 0.1 12.1 0.3 0.56 9.8 0.1 2.1 1 1 1 2 2 2 0 CodY helix-turn-helix domain XRN1_D2_D3 PF18334.1 gi|347524259|ref|YP_004781829.1| - 0.11 12.8 0.0 0.26 11.5 0.0 1.6 2 0 0 2 2 2 0 Exoribonuclease Xrn1 D2/D3 domain IGPD PF00475.18 gi|347524260|ref|YP_004781830.1| - 4.7e-56 189.1 0.0 5.7e-56 188.8 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase GGDEF PF00990.21 gi|347524260|ref|YP_004781830.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Diguanylate cyclase, GGDEF domain DUF4388 PF14332.6 gi|347524261|ref|YP_004781831.1| - 0.0008 19.6 0.4 0.011 16.0 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4388) JSRP PF15312.6 gi|347524261|ref|YP_004781831.1| - 0.26 11.2 0.9 0.72 9.8 0.0 2.2 3 0 0 3 3 3 0 Junctional sarcoplasmic reticulum protein T2SSE PF00437.20 gi|347524262|ref|YP_004781832.1| - 1.8e-10 40.3 0.0 3.4e-10 39.4 0.0 1.6 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|347524262|ref|YP_004781832.1| - 3e-05 24.6 0.4 0.00025 21.6 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|347524262|ref|YP_004781832.1| - 0.00021 21.7 0.0 0.00049 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain PIN PF01850.21 gi|347524262|ref|YP_004781832.1| - 0.00032 21.2 1.1 0.0014 19.1 0.3 2.6 2 1 0 2 2 1 1 PIN domain Zeta_toxin PF06414.12 gi|347524262|ref|YP_004781832.1| - 0.00044 19.6 0.0 0.00091 18.6 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin DnaB_C PF03796.15 gi|347524262|ref|YP_004781832.1| - 0.0006 19.2 0.1 0.045 13.1 0.0 2.4 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_28 PF13521.6 gi|347524262|ref|YP_004781832.1| - 0.0016 18.7 0.1 0.0099 16.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|347524262|ref|YP_004781832.1| - 0.002 17.9 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|347524262|ref|YP_004781832.1| - 0.003 17.2 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|347524262|ref|YP_004781832.1| - 0.0056 15.7 0.0 0.013 14.5 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|347524262|ref|YP_004781832.1| - 0.0076 15.9 0.6 0.027 14.1 0.1 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.17 gi|347524262|ref|YP_004781832.1| - 0.0083 15.8 0.0 0.027 14.2 0.0 1.9 1 1 1 2 2 2 1 Thymidylate kinase AAA_14 PF13173.6 gi|347524262|ref|YP_004781832.1| - 0.0089 16.1 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|347524262|ref|YP_004781832.1| - 0.0096 15.7 0.1 0.022 14.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347524262|ref|YP_004781832.1| - 0.011 16.2 0.0 0.039 14.4 0.0 2.0 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|347524262|ref|YP_004781832.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|347524262|ref|YP_004781832.1| - 0.013 15.3 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|347524262|ref|YP_004781832.1| - 0.013 16.0 0.0 0.028 14.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RuvB_N PF05496.12 gi|347524262|ref|YP_004781832.1| - 0.017 14.8 0.0 0.065 13.0 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 gi|347524262|ref|YP_004781832.1| - 0.019 14.9 1.7 0.084 12.8 0.0 2.8 4 0 0 4 4 3 0 NTPase ResIII PF04851.15 gi|347524262|ref|YP_004781832.1| - 0.019 14.9 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit KTI12 PF08433.10 gi|347524262|ref|YP_004781832.1| - 0.024 14.1 0.0 0.056 12.9 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|347524262|ref|YP_004781832.1| - 0.026 14.7 0.0 0.057 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347524262|ref|YP_004781832.1| - 0.026 14.5 0.1 0.05 13.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|347524262|ref|YP_004781832.1| - 0.037 14.3 0.0 0.14 12.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|347524262|ref|YP_004781832.1| - 0.041 13.2 0.0 0.15 11.4 0.0 1.9 1 0 0 1 1 1 0 KaiC Sigma54_activat PF00158.26 gi|347524262|ref|YP_004781832.1| - 0.047 13.4 0.0 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain PRK PF00485.18 gi|347524262|ref|YP_004781832.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Sigma54_activ_2 PF14532.6 gi|347524262|ref|YP_004781832.1| - 0.062 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.18 gi|347524262|ref|YP_004781832.1| - 0.063 12.6 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 1 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|347524262|ref|YP_004781832.1| - 0.067 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|347524262|ref|YP_004781832.1| - 0.074 12.4 0.3 0.99 8.7 0.0 2.6 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|347524262|ref|YP_004781832.1| - 0.092 12.5 0.1 0.22 11.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|347524262|ref|YP_004781832.1| - 0.097 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|347524262|ref|YP_004781832.1| - 0.11 12.5 0.0 0.24 11.5 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.22 gi|347524262|ref|YP_004781832.1| - 0.13 12.6 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Hydin_ADK PF17213.3 gi|347524262|ref|YP_004781832.1| - 0.14 12.4 0.2 0.22 11.8 0.2 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain AAA_29 PF13555.6 gi|347524262|ref|YP_004781832.1| - 0.14 11.9 0.0 0.66 9.8 0.0 2.1 2 0 0 2 2 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|347524262|ref|YP_004781832.1| - 0.17 12.0 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF815 PF05673.13 gi|347524262|ref|YP_004781832.1| - 0.2 10.8 0.0 0.42 9.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_17 PF13207.6 gi|347524262|ref|YP_004781832.1| - 0.27 11.7 2.2 0.49 10.8 0.1 2.5 3 0 0 3 3 2 0 AAA domain Hjc PF01870.18 gi|347524263|ref|YP_004781833.1| - 6.8e-27 93.3 0.1 1.2e-26 92.5 0.1 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|347524263|ref|YP_004781833.1| - 0.071 13.6 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain DUF2282 PF10048.9 gi|347524263|ref|YP_004781833.1| - 0.2 11.7 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2282) Band_7 PF01145.25 gi|347524264|ref|YP_004781834.1| - 1.7e-38 132.4 3.7 1.7e-38 132.4 3.7 1.8 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|347524264|ref|YP_004781834.1| - 0.002 17.9 0.4 0.0058 16.4 0.1 2.0 2 1 0 2 2 2 1 SPFH domain-Band 7 family ProSAAS PF07259.12 gi|347524264|ref|YP_004781834.1| - 0.045 13.7 2.1 0.08 12.9 2.1 1.4 1 0 0 1 1 1 0 ProSAAS precursor NfeD PF01957.18 gi|347524265|ref|YP_004781835.1| - 3.1e-13 49.9 3.1 4.7e-13 49.3 0.3 2.8 4 0 0 4 4 4 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|347524265|ref|YP_004781835.1| - 2.8e-09 37.1 0.0 4.9e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Clp protease DUF3344 PF11824.8 gi|347524266|ref|YP_004781836.1| - 0.0015 18.2 0.1 0.0034 17.0 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3344) CARDB PF07705.11 gi|347524266|ref|YP_004781836.1| - 0.0022 18.2 0.1 0.063 13.5 0.0 2.9 3 1 0 3 3 3 1 CARDB ResIII PF04851.15 gi|347524267|ref|YP_004781837.1| - 1.4e-23 83.8 0.0 5.8e-23 81.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|347524267|ref|YP_004781837.1| - 2.8e-23 82.4 0.2 1.8e-22 79.7 0.0 2.0 1 1 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|347524267|ref|YP_004781837.1| - 2.7e-15 56.7 0.1 8.4e-15 55.1 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|347524267|ref|YP_004781837.1| - 1.8e-08 34.4 0.1 1.7e-07 31.2 0.0 2.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|347524267|ref|YP_004781837.1| - 8.4e-08 31.3 0.2 9.7e-06 24.5 0.0 2.3 1 1 1 2 2 2 2 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|347524267|ref|YP_004781837.1| - 6.5e-05 23.2 0.0 0.0011 19.2 0.0 2.8 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|347524267|ref|YP_004781837.1| - 0.016 14.5 0.1 0.036 13.3 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) SWI2_SNF2 PF18766.1 gi|347524267|ref|YP_004781837.1| - 0.029 14.1 0.1 0.081 12.6 0.0 1.8 2 1 0 2 2 2 0 SWI2/SNF2 ATPase Helicase_RecD PF05127.14 gi|347524267|ref|YP_004781837.1| - 0.047 13.5 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Helicase Pribosyltran PF00156.27 gi|347524269|ref|YP_004781839.1| - 3.3e-15 55.9 0.2 5.1e-15 55.4 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|347524269|ref|YP_004781839.1| - 1.7e-05 24.8 0.2 6e-05 23.0 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_49 PF18010.1 gi|347524269|ref|YP_004781839.1| - 0.0002 21.1 0.1 0.00042 20.1 0.1 1.5 1 0 0 1 1 1 1 Cry35Ab1 HTH C-terminal domain PRTase_2 PF15609.6 gi|347524269|ref|YP_004781839.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase ParA PF10609.9 gi|347524270|ref|YP_004781840.1| - 2e-95 318.9 0.0 2.4e-95 318.6 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|347524270|ref|YP_004781840.1| - 1.3e-17 64.1 0.0 3.6e-17 62.6 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|347524270|ref|YP_004781840.1| - 4.1e-09 36.3 0.1 0.0004 19.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|347524270|ref|YP_004781840.1| - 8.5e-06 25.8 0.7 7.1e-05 22.8 0.1 2.2 2 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|347524270|ref|YP_004781840.1| - 1.1e-05 24.7 0.2 1.1e-05 24.7 0.2 2.2 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|347524270|ref|YP_004781840.1| - 6.6e-05 22.8 0.5 0.13 12.0 0.2 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|347524270|ref|YP_004781840.1| - 7.4e-05 22.2 0.1 0.00011 21.6 0.1 1.4 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|347524270|ref|YP_004781840.1| - 0.00026 20.6 0.0 0.00055 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|347524270|ref|YP_004781840.1| - 0.00097 18.2 0.1 0.0015 17.5 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|347524270|ref|YP_004781840.1| - 0.0014 18.0 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_30 PF13604.6 gi|347524270|ref|YP_004781840.1| - 0.0031 17.3 0.2 0.0051 16.6 0.2 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|347524270|ref|YP_004781840.1| - 0.0041 16.6 0.1 0.019 14.5 0.1 1.9 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ IstB_IS21 PF01695.17 gi|347524270|ref|YP_004781840.1| - 0.0062 16.3 0.0 0.015 15.0 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein PhoH PF02562.16 gi|347524270|ref|YP_004781840.1| - 0.0071 15.8 0.2 0.011 15.2 0.2 1.3 1 0 0 1 1 1 1 PhoH-like protein Zeta_toxin PF06414.12 gi|347524270|ref|YP_004781840.1| - 0.0091 15.3 0.1 0.015 14.6 0.1 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|347524270|ref|YP_004781840.1| - 0.013 15.9 0.0 0.03 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|347524270|ref|YP_004781840.1| - 0.049 13.5 0.1 0.099 12.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase APS_kinase PF01583.20 gi|347524270|ref|YP_004781840.1| - 0.082 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.10 gi|347524270|ref|YP_004781840.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SRP54 PF00448.22 gi|347524270|ref|YP_004781840.1| - 0.11 12.1 0.1 0.26 10.9 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|347524270|ref|YP_004781840.1| - 0.12 12.3 0.3 0.28 11.2 0.3 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PIF1 PF05970.14 gi|347524270|ref|YP_004781840.1| - 0.21 10.7 0.4 0.44 9.7 0.1 1.6 2 0 0 2 2 2 0 PIF1-like helicase Lactamase_B PF00753.27 gi|347524271|ref|YP_004781841.1| - 8.6e-07 29.2 0.3 1e-06 28.9 0.3 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|347524271|ref|YP_004781841.1| - 0.0012 18.4 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|347524271|ref|YP_004781841.1| - 0.056 13.3 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain MazE_antitoxin PF04014.18 gi|347524272|ref|YP_004781842.1| - 8.5e-07 28.8 0.3 1.5e-06 28.0 0.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ACT PF01842.25 gi|347524272|ref|YP_004781842.1| - 0.0019 18.0 0.0 0.0044 16.8 0.0 1.8 1 1 0 1 1 1 1 ACT domain MraZ PF02381.18 gi|347524272|ref|YP_004781842.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like DUF72 PF01904.18 gi|347524273|ref|YP_004781843.1| - 1.7e-39 136.2 1.0 2.2e-39 135.8 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|347524273|ref|YP_004781843.1| - 0.00016 21.2 0.2 0.0037 16.7 0.0 2.8 1 1 2 3 3 3 1 Xylose isomerase-like TIM barrel Peptidase_M20 PF01546.28 gi|347524274|ref|YP_004781844.1| - 1.2e-21 77.3 0.1 2.1e-21 76.6 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|347524274|ref|YP_004781844.1| - 7.6e-14 51.6 0.0 1.8e-13 50.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Hydrolase PF00702.26 gi|347524275|ref|YP_004781845.1| - 3.1e-13 50.5 0.1 4.5e-13 50.0 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|347524275|ref|YP_004781845.1| - 3.9e-12 46.6 0.0 1.4e-11 44.8 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|347524275|ref|YP_004781845.1| - 2.8e-05 24.1 0.2 5.8e-05 23.1 0.2 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|347524275|ref|YP_004781845.1| - 0.0028 18.1 0.2 0.0047 17.3 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Thymidylate_kin PF02223.17 gi|347524276|ref|YP_004781846.1| - 3e-28 98.8 0.0 4.4e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|347524276|ref|YP_004781846.1| - 0.00013 21.9 0.5 0.0005 20.0 0.1 2.0 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|347524276|ref|YP_004781846.1| - 0.034 14.7 0.2 0.26 11.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain Orn_Arg_deC_N PF02784.16 gi|347524276|ref|YP_004781846.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Methyltr_RsmB-F PF01189.17 gi|347524277|ref|YP_004781847.1| - 1.2e-25 90.3 0.0 1.8e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|347524277|ref|YP_004781847.1| - 0.01 16.3 0.0 0.018 15.5 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_15 PF09445.10 gi|347524277|ref|YP_004781847.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Proteasome PF00227.26 gi|347524278|ref|YP_004781848.1| - 1.1e-59 201.1 0.0 1.6e-59 200.6 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|347524278|ref|YP_004781848.1| - 4.1e-14 51.9 1.0 7.7e-14 51.1 0.2 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RuvA_C PF07499.13 gi|347524278|ref|YP_004781848.1| - 0.009 16.4 0.2 0.015 15.7 0.2 1.4 1 0 0 1 1 1 1 RuvA, C-terminal domain SBDS PF01172.18 gi|347524279|ref|YP_004781849.1| - 1.3e-20 73.2 0.3 2.3e-20 72.5 0.0 1.5 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|347524279|ref|YP_004781849.1| - 2e-20 72.9 0.0 3.5e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|347524279|ref|YP_004781849.1| - 0.0052 16.8 0.1 0.014 15.4 0.0 1.7 2 0 0 2 2 2 1 Elongation factor G C-terminus CAMSAP_CC1 PF17095.5 gi|347524279|ref|YP_004781849.1| - 0.018 14.9 2.2 0.05 13.5 2.2 1.7 1 0 0 1 1 1 0 Spectrin-binding region of Ca2+-Calmodulin KH_6 PF15985.5 gi|347524280|ref|YP_004781850.1| - 3.1e-06 27.4 0.2 5.2e-06 26.7 0.2 1.4 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|347524280|ref|YP_004781850.1| - 0.00014 21.6 1.0 0.00034 20.4 1.0 1.7 1 1 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|347524280|ref|YP_004781850.1| - 0.00015 21.5 0.3 0.00031 20.5 0.3 1.5 1 0 0 1 1 1 1 KH domain Ribosomal_S30AE PF02482.19 gi|347524280|ref|YP_004781850.1| - 0.11 13.2 0.2 3 8.7 0.0 2.8 2 1 1 3 3 3 0 Sigma 54 modulation protein / S30EA ribosomal protein RNase_PH PF01138.21 gi|347524281|ref|YP_004781851.1| - 4.2e-39 134.1 0.0 5.6e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|347524281|ref|YP_004781851.1| - 1.2e-14 54.1 0.0 1.8e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|347524282|ref|YP_004781852.1| - 9e-32 110.4 0.0 2.6e-30 105.6 0.0 2.1 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|347524282|ref|YP_004781852.1| - 9.4e-13 48.0 0.3 2.1e-12 46.9 0.3 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|347524283|ref|YP_004781853.1| - 2.4e-31 107.7 1.4 2.6e-31 107.5 1.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|347524283|ref|YP_004781853.1| - 0.00013 21.8 4.7 0.00023 21.1 4.6 1.5 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DUF4379 PF14311.6 gi|347524283|ref|YP_004781853.1| - 0.0021 18.4 3.5 0.13 12.7 0.4 2.2 2 0 0 2 2 2 2 Probable Zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347524283|ref|YP_004781853.1| - 0.0047 16.8 0.4 0.0065 16.4 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|347524283|ref|YP_004781853.1| - 0.0079 16.6 2.2 0.014 15.8 2.2 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar Elf1 PF05129.13 gi|347524283|ref|YP_004781853.1| - 0.15 12.2 0.9 0.26 11.4 0.9 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-CCHC PF00098.23 gi|347524283|ref|YP_004781853.1| - 0.17 12.0 3.8 1.1 9.4 0.2 2.2 2 0 0 2 2 2 0 Zinc knuckle Mu-like_Com PF10122.9 gi|347524283|ref|YP_004781853.1| - 0.26 10.8 0.2 0.26 10.8 0.2 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_2 PF13240.6 gi|347524283|ref|YP_004781853.1| - 0.33 10.7 6.3 0.96 9.3 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|347524283|ref|YP_004781853.1| - 0.34 11.2 6.9 1.1 9.6 6.9 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-Sec23_Sec24 PF04810.15 gi|347524283|ref|YP_004781853.1| - 0.39 10.8 4.5 1.4 9.1 0.2 2.3 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-tcix PF14952.6 gi|347524283|ref|YP_004781853.1| - 0.53 9.9 5.3 1.7 8.3 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding A2L_zn_ribbon PF08792.10 gi|347524283|ref|YP_004781853.1| - 0.76 9.6 3.3 12 5.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain AAA PF00004.29 gi|347524284|ref|YP_004781854.1| - 1.6e-14 54.5 0.0 3.3e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RFC1 PF08519.12 gi|347524284|ref|YP_004781854.1| - 2.4e-07 31.0 0.4 6.1e-07 29.7 0.4 1.7 1 1 0 1 1 1 1 Replication factor RFC1 C terminal domain DNA_pol3_delta PF06144.13 gi|347524284|ref|YP_004781854.1| - 1.5e-06 28.1 0.0 3.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_5 PF07728.14 gi|347524284|ref|YP_004781854.1| - 3.7e-06 27.0 0.1 2.2e-05 24.5 0.0 2.4 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|347524284|ref|YP_004781854.1| - 4e-06 27.3 0.2 2.7e-05 24.6 0.0 2.4 2 2 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|347524284|ref|YP_004781854.1| - 3.4e-05 23.1 0.0 9.3e-05 21.7 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|347524284|ref|YP_004781854.1| - 3.5e-05 23.9 0.0 6.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|347524284|ref|YP_004781854.1| - 0.00015 21.9 0.0 0.0004 20.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_assoc_2 PF16193.5 gi|347524284|ref|YP_004781854.1| - 0.00077 19.8 0.9 0.0028 18.0 0.1 2.4 2 1 0 2 2 2 1 AAA C-terminal domain Viral_helicase1 PF01443.18 gi|347524284|ref|YP_004781854.1| - 0.00089 19.1 0.8 0.0015 18.3 0.0 1.7 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase IstB_IS21 PF01695.17 gi|347524284|ref|YP_004781854.1| - 0.0018 18.1 0.0 0.0049 16.6 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad17 PF03215.15 gi|347524284|ref|YP_004781854.1| - 0.0021 18.0 0.1 0.0091 15.9 0.1 2.1 1 1 1 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|347524284|ref|YP_004781854.1| - 0.0022 17.8 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|347524284|ref|YP_004781854.1| - 0.0024 18.1 0.2 0.12 12.7 0.0 2.8 2 1 0 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|347524284|ref|YP_004781854.1| - 0.0027 17.6 0.0 0.016 15.1 0.0 2.3 3 1 0 3 3 3 1 Bacterial dnaA protein Parvo_NS1 PF01057.17 gi|347524284|ref|YP_004781854.1| - 0.0044 16.1 0.0 0.011 14.9 0.0 1.6 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_7 PF12775.7 gi|347524284|ref|YP_004781854.1| - 0.0069 15.9 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|347524284|ref|YP_004781854.1| - 0.0098 15.8 0.1 0.094 12.6 0.0 2.1 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|347524284|ref|YP_004781854.1| - 0.02 14.1 0.0 0.048 12.8 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|347524284|ref|YP_004781854.1| - 0.025 15.1 0.0 0.15 12.6 0.0 2.2 1 1 1 2 2 2 0 ABC transporter Zeta_toxin PF06414.12 gi|347524284|ref|YP_004781854.1| - 0.042 13.1 0.0 0.077 12.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|347524284|ref|YP_004781854.1| - 0.061 13.7 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PPV_E1_C PF00519.17 gi|347524284|ref|YP_004781854.1| - 0.071 11.9 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 Papillomavirus helicase AAA_25 PF13481.6 gi|347524284|ref|YP_004781854.1| - 0.08 12.5 0.1 0.39 10.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|347524284|ref|YP_004781854.1| - 0.26 11.8 1.7 0.26 11.7 0.0 1.9 3 0 0 3 3 1 0 AAA domain Rep_fac_C PF08542.11 gi|347524285|ref|YP_004781855.1| - 3.6e-24 85.0 0.0 1.2e-23 83.3 0.0 2.0 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|347524285|ref|YP_004781855.1| - 8e-17 61.9 0.0 1.5e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|347524285|ref|YP_004781855.1| - 1.7e-16 60.5 0.1 1.3e-11 44.5 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|347524285|ref|YP_004781855.1| - 1.1e-07 31.7 0.1 2.7e-07 30.5 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|347524285|ref|YP_004781855.1| - 2.9e-07 30.8 0.1 0.0079 16.5 0.0 2.6 1 1 1 2 2 2 2 AAA domain Rad17 PF03215.15 gi|347524285|ref|YP_004781855.1| - 5.2e-07 29.8 0.0 2.4e-06 27.6 0.0 2.0 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|347524285|ref|YP_004781855.1| - 1.1e-06 29.2 0.0 0.0016 18.8 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|347524285|ref|YP_004781855.1| - 1.2e-06 28.6 0.3 1.3e-05 25.3 0.0 2.8 4 1 0 4 4 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|347524285|ref|YP_004781855.1| - 2.7e-06 27.3 0.0 4.7e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|347524285|ref|YP_004781855.1| - 3e-06 27.5 0.1 9.5e-06 25.9 0.1 2.0 1 0 0 1 1 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|347524285|ref|YP_004781855.1| - 3.3e-06 27.2 0.0 0.00024 21.2 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|347524285|ref|YP_004781855.1| - 3.7e-06 27.5 0.0 0.0002 21.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.13 gi|347524285|ref|YP_004781855.1| - 9.7e-06 25.5 0.0 2.2e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.21 gi|347524285|ref|YP_004781855.1| - 0.0001 21.7 0.0 0.003 17.0 0.0 2.4 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|347524285|ref|YP_004781855.1| - 0.00027 21.0 0.0 0.0012 18.9 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|347524285|ref|YP_004781855.1| - 0.00036 20.1 0.0 0.0006 19.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region PhoH PF02562.16 gi|347524285|ref|YP_004781855.1| - 0.00041 19.9 0.0 0.11 11.9 0.0 2.3 1 1 1 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.17 gi|347524285|ref|YP_004781855.1| - 0.00046 20.0 0.0 0.0013 18.5 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|347524285|ref|YP_004781855.1| - 0.00051 20.2 0.0 0.0013 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|347524285|ref|YP_004781855.1| - 0.00061 19.8 0.0 0.0025 17.8 0.0 1.9 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|347524285|ref|YP_004781855.1| - 0.0011 18.3 0.0 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|347524285|ref|YP_004781855.1| - 0.0012 19.1 0.0 0.0024 18.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|347524285|ref|YP_004781855.1| - 0.0015 18.0 0.0 0.027 13.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial TniB protein FtsK_SpoIIIE PF01580.18 gi|347524285|ref|YP_004781855.1| - 0.0016 17.8 0.0 0.0068 15.8 0.0 2.0 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|347524285|ref|YP_004781855.1| - 0.0016 18.2 0.4 0.021 14.6 0.4 2.6 1 1 1 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|347524285|ref|YP_004781855.1| - 0.0048 17.0 0.0 0.012 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.6 gi|347524285|ref|YP_004781855.1| - 0.0063 16.1 0.4 0.14 11.8 0.1 2.5 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.10 gi|347524285|ref|YP_004781855.1| - 0.0073 15.8 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|347524285|ref|YP_004781855.1| - 0.0081 16.5 0.0 0.017 15.5 0.0 1.5 2 0 0 2 2 1 1 RNA helicase Sigma54_activat PF00158.26 gi|347524285|ref|YP_004781855.1| - 0.0084 15.8 0.0 0.33 10.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|347524285|ref|YP_004781855.1| - 0.012 15.9 0.2 0.51 10.7 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|347524285|ref|YP_004781855.1| - 0.014 15.2 0.0 0.028 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|347524285|ref|YP_004781855.1| - 0.014 15.5 0.0 0.058 13.5 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|347524285|ref|YP_004781855.1| - 0.015 14.3 0.0 0.086 11.9 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|347524285|ref|YP_004781855.1| - 0.021 14.8 0.0 0.72 9.7 0.0 2.3 1 1 1 2 2 2 0 NTPase Viral_helicase1 PF01443.18 gi|347524285|ref|YP_004781855.1| - 0.027 14.2 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|347524285|ref|YP_004781855.1| - 0.033 13.4 0.0 0.058 12.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.22 gi|347524285|ref|YP_004781855.1| - 0.037 13.6 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TIP49 PF06068.13 gi|347524285|ref|YP_004781855.1| - 0.044 13.0 0.0 0.095 11.9 0.0 1.5 2 0 0 2 2 2 0 TIP49 P-loop domain NACHT PF05729.12 gi|347524285|ref|YP_004781855.1| - 0.045 13.7 0.0 0.25 11.3 0.0 2.1 1 1 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|347524285|ref|YP_004781855.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain alpha-hel2 PF14456.6 gi|347524285|ref|YP_004781855.1| - 0.07 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Alpha-helical domain 2 APS_kinase PF01583.20 gi|347524285|ref|YP_004781855.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|347524285|ref|YP_004781855.1| - 0.15 11.3 0.0 0.3 10.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF5613 PF18467.1 gi|347524285|ref|YP_004781855.1| - 0.16 12.4 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5613) DUF2075 PF09848.9 gi|347524285|ref|YP_004781855.1| - 0.17 11.1 0.0 1.2 8.3 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ADK PF00406.22 gi|347524285|ref|YP_004781855.1| - 0.45 10.6 1.8 8 6.6 0.1 3.2 3 1 1 4 4 4 0 Adenylate kinase DUF3856 PF12968.7 gi|347524286|ref|YP_004781856.1| - 0.077 13.1 0.1 0.094 12.8 0.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) CN_hydrolase PF00795.22 gi|347524287|ref|YP_004781857.1| - 2.8e-33 115.4 0.0 3.3e-33 115.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase XdhC_CoxI PF02625.16 gi|347524287|ref|YP_004781857.1| - 0.026 14.7 0.1 0.06 13.5 0.1 1.7 1 0 0 1 1 1 0 XdhC and CoxI family GATase PF00117.28 gi|347524288|ref|YP_004781858.1| - 1.4e-32 113.0 0.0 1.6e-32 112.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|347524288|ref|YP_004781858.1| - 1.4e-07 31.5 0.3 6.9e-07 29.2 0.3 2.0 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.16 gi|347524288|ref|YP_004781858.1| - 0.018 14.0 0.0 0.034 13.1 0.0 1.5 1 1 1 2 2 2 0 Homoserine O-succinyltransferase GMP_synt_C PF00958.22 gi|347524289|ref|YP_004781859.1| - 7.2e-17 61.2 0.1 4.3e-14 52.3 0.0 2.5 2 0 0 2 2 2 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|347524289|ref|YP_004781859.1| - 2.2e-10 40.1 0.1 0.00038 19.6 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.20 gi|347524289|ref|YP_004781859.1| - 8.8e-06 25.6 0.0 1.9e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|347524289|ref|YP_004781859.1| - 4e-05 23.2 0.0 0.087 12.3 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|347524289|ref|YP_004781859.1| - 0.031 13.1 0.1 0.35 9.6 0.1 2.1 2 0 0 2 2 2 0 tRNA methyl transferase ThiI PF02568.14 gi|347524289|ref|YP_004781859.1| - 0.16 11.6 0.0 0.89 9.1 0.0 2.2 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) HEPN PF05168.14 gi|347524290|ref|YP_004781860.1| - 0.019 15.1 0.5 0.022 14.9 0.5 1.1 1 0 0 1 1 1 0 HEPN domain FISNA PF14484.6 gi|347524290|ref|YP_004781860.1| - 0.17 12.1 0.3 1.4 9.2 0.1 2.0 1 1 1 2 2 2 0 Fish-specific NACHT associated domain YibE_F PF07907.11 gi|347524291|ref|YP_004781861.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 YibE/F-like protein Fer4 PF00037.27 gi|347524292|ref|YP_004781862.1| - 1.3e-17 62.8 37.8 2.1e-07 30.4 2.3 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347524292|ref|YP_004781862.1| - 2.1e-14 53.8 29.9 4.9e-09 36.6 10.9 3.6 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|347524292|ref|YP_004781862.1| - 2.7e-12 46.2 41.4 2.5e-06 27.3 2.7 5.1 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|347524292|ref|YP_004781862.1| - 1.1e-09 38.3 32.8 1.9e-06 27.9 12.1 3.8 2 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|347524292|ref|YP_004781862.1| - 2.2e-09 37.7 28.5 0.00055 20.4 0.1 5.3 4 2 2 6 6 6 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347524292|ref|YP_004781862.1| - 4.4e-09 36.3 37.7 1.7e-06 28.1 13.2 4.2 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347524292|ref|YP_004781862.1| - 4.2e-08 34.0 31.2 0.019 15.9 0.6 4.9 3 2 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|347524292|ref|YP_004781862.1| - 5.3e-08 32.5 46.4 0.00085 19.3 2.3 5.4 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|347524292|ref|YP_004781862.1| - 3.1e-07 30.4 35.7 2.6e-06 27.4 8.9 4.4 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|347524292|ref|YP_004781862.1| - 3.1e-07 30.7 29.7 0.013 15.9 0.4 4.8 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|347524292|ref|YP_004781862.1| - 0.0017 18.5 15.6 0.13 12.5 0.1 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347524292|ref|YP_004781862.1| - 0.0022 18.4 23.1 0.0051 17.2 2.4 5.6 7 0 0 7 7 4 3 4Fe-4S binding domain RNA_pol_N PF01194.17 gi|347524292|ref|YP_004781862.1| - 0.02 15.2 1.0 0.076 13.3 0.1 2.5 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit ETF_QO PF05187.13 gi|347524292|ref|YP_004781862.1| - 0.024 14.8 2.3 0.2 11.8 2.3 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|347524292|ref|YP_004781862.1| - 0.086 13.6 20.2 0.45 11.3 0.8 4.4 5 0 0 5 5 3 0 4Fe-4S single cluster domain Fer4_11 PF13247.6 gi|347524292|ref|YP_004781862.1| - 0.32 11.1 18.0 5.5 7.2 0.4 4.4 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347524292|ref|YP_004781862.1| - 6.4 8.0 56.0 0.78 10.8 4.5 5.6 6 0 0 6 6 5 0 4Fe-4S binding domain Glyco_hydro_114 PF03537.13 gi|347524294|ref|YP_004781864.1| - 4e-12 45.9 0.0 5.1e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Glycoside-hydrolase family GH114 Tox-HNH-HHH PF15637.6 gi|347524294|ref|YP_004781864.1| - 0.027 14.6 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif DUF4448 PF14610.6 gi|347524294|ref|YP_004781864.1| - 0.16 11.8 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4448) Pribosyltran PF00156.27 gi|347524297|ref|YP_004781867.1| - 8.3e-28 96.9 0.0 1.1e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UBA_4 PF14555.6 gi|347524297|ref|YP_004781867.1| - 0.048 13.5 0.0 0.23 11.3 0.0 2.0 2 0 0 2 2 2 0 UBA-like domain UPRTase PF14681.6 gi|347524297|ref|YP_004781867.1| - 0.065 12.7 0.0 0.083 12.3 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase ABC_tran PF00005.27 gi|347524298|ref|YP_004781868.1| - 3.5e-40 137.7 0.0 6.7e-22 78.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|347524298|ref|YP_004781868.1| - 2.1e-17 63.9 0.3 0.0011 18.8 0.1 4.2 3 1 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|347524298|ref|YP_004781868.1| - 1.3e-13 50.5 2.0 4e-13 48.9 2.0 1.9 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|347524298|ref|YP_004781868.1| - 5e-11 42.4 1.0 0.0005 19.6 0.1 3.9 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|347524298|ref|YP_004781868.1| - 8.8e-08 31.7 4.4 8.8e-08 31.7 4.4 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_16 PF13191.6 gi|347524298|ref|YP_004781868.1| - 3.8e-07 30.6 0.1 0.0023 18.3 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|347524298|ref|YP_004781868.1| - 1.6e-06 28.6 0.0 0.091 13.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_6 PF12837.7 gi|347524298|ref|YP_004781868.1| - 8e-06 25.7 12.3 0.00059 19.8 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_33 PF13671.6 gi|347524298|ref|YP_004781868.1| - 4.6e-05 23.6 0.8 0.36 11.0 0.1 3.4 2 2 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|347524298|ref|YP_004781868.1| - 4.6e-05 23.2 0.1 0.21 11.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain Fer4_21 PF14697.6 gi|347524298|ref|YP_004781868.1| - 9e-05 22.5 6.4 0.00015 21.8 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.15 gi|347524298|ref|YP_004781868.1| - 0.00019 21.4 0.0 0.54 10.2 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain Fer4_10 PF13237.6 gi|347524298|ref|YP_004781868.1| - 0.00021 21.3 8.7 0.0018 18.4 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain NACHT PF05729.12 gi|347524298|ref|YP_004781868.1| - 0.00024 21.1 0.3 0.23 11.4 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Fer4_7 PF12838.7 gi|347524298|ref|YP_004781868.1| - 0.00025 21.6 15.6 0.0021 18.6 1.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|347524298|ref|YP_004781868.1| - 0.00026 20.9 2.5 0.00026 20.9 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.6 gi|347524298|ref|YP_004781868.1| - 0.00039 20.7 0.8 1.2 9.4 0.3 2.6 2 2 0 2 2 2 2 AAA domain Thymidylate_kin PF02223.17 gi|347524298|ref|YP_004781868.1| - 0.00056 19.6 0.0 0.43 10.2 0.0 2.7 3 0 0 3 3 2 1 Thymidylate kinase RNA_helicase PF00910.22 gi|347524298|ref|YP_004781868.1| - 0.001 19.4 0.0 0.48 10.8 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_18 PF13238.6 gi|347524298|ref|YP_004781868.1| - 0.0012 19.4 0.0 2.6 8.6 0.0 3.5 4 1 0 4 4 3 1 AAA domain Fer4_9 PF13187.6 gi|347524298|ref|YP_004781868.1| - 0.0017 18.5 6.2 0.0035 17.5 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|347524298|ref|YP_004781868.1| - 0.0027 18.2 0.1 3.3 8.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|347524298|ref|YP_004781868.1| - 0.0037 17.2 0.0 0.53 10.2 0.0 2.9 3 0 0 3 3 3 1 RsgA GTPase AAA_28 PF13521.6 gi|347524298|ref|YP_004781868.1| - 0.0045 17.3 0.2 8.9 6.5 0.0 3.2 3 0 0 3 3 3 0 AAA domain SbcCD_C PF13558.6 gi|347524298|ref|YP_004781868.1| - 0.0046 17.2 0.2 2.5 8.4 0.1 2.9 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|347524298|ref|YP_004781868.1| - 0.0047 16.9 0.1 0.85 9.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|347524298|ref|YP_004781868.1| - 0.005 16.6 0.0 0.87 9.2 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|347524298|ref|YP_004781868.1| - 0.014 15.1 0.0 1.5 8.6 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_29 PF13555.6 gi|347524298|ref|YP_004781868.1| - 0.018 14.8 0.2 6.6 6.6 0.1 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain TsaE PF02367.17 gi|347524298|ref|YP_004781868.1| - 0.018 15.0 0.0 0.94 9.5 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF87 PF01935.17 gi|347524298|ref|YP_004781868.1| - 0.023 14.8 0.2 6.3 6.8 0.0 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_19 PF13245.6 gi|347524298|ref|YP_004781868.1| - 0.024 15.0 0.1 12 6.2 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_30 PF13604.6 gi|347524298|ref|YP_004781868.1| - 0.024 14.3 6.1 3.3 7.4 0.1 3.5 2 2 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|347524298|ref|YP_004781868.1| - 0.024 14.2 1.3 3.8 7.1 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.23 gi|347524298|ref|YP_004781868.1| - 0.025 14.7 0.1 8.1 6.6 0.0 3.2 3 1 0 3 3 2 0 50S ribosome-binding GTPase MobB PF03205.14 gi|347524298|ref|YP_004781868.1| - 0.036 13.9 0.3 6.2 6.7 0.2 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|347524298|ref|YP_004781868.1| - 0.055 12.6 0.0 8.1 5.5 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain Fer4_8 PF13183.6 gi|347524298|ref|YP_004781868.1| - 0.14 12.7 0.3 0.14 12.7 0.3 1.8 2 0 0 2 2 1 0 4Fe-4S dicluster domain AAA_5 PF07728.14 gi|347524298|ref|YP_004781868.1| - 0.14 12.2 2.2 6.9 6.7 0.0 3.3 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|347524298|ref|YP_004781868.1| - 0.16 11.9 0.1 0.86 9.5 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Fer4_16 PF13484.6 gi|347524298|ref|YP_004781868.1| - 0.18 12.8 8.2 0.09 13.7 2.4 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain ATP_bind_1 PF03029.17 gi|347524298|ref|YP_004781868.1| - 0.2 11.4 0.3 9.3 5.9 0.0 3.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|347524298|ref|YP_004781868.1| - 0.3 11.0 3.4 3.1 7.7 0.0 2.9 3 0 0 3 3 3 0 NTPase AAA_25 PF13481.6 gi|347524298|ref|YP_004781868.1| - 0.32 10.6 2.7 2.1 7.9 0.4 2.7 2 1 0 2 2 2 0 AAA domain Fer4_17 PF13534.6 gi|347524298|ref|YP_004781868.1| - 0.58 10.7 6.2 0.13 12.8 1.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347524298|ref|YP_004781868.1| - 0.58 10.8 10.8 0.16 12.5 3.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|347524298|ref|YP_004781868.1| - 1.1 10.4 13.5 0.17 12.9 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain PIN PF01850.21 gi|347524299|ref|YP_004781869.1| - 4e-06 27.3 0.1 5.2e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|347524300|ref|YP_004781870.1| - 2.9e-08 33.5 0.6 2.9e-08 33.5 0.6 1.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|347524300|ref|YP_004781870.1| - 0.0008 19.3 0.1 0.0011 18.9 0.1 1.3 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like HetR_C PF18460.1 gi|347524300|ref|YP_004781870.1| - 0.04 13.8 1.1 0.06 13.3 1.1 1.3 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain DUF1173 PF06666.11 gi|347524300|ref|YP_004781870.1| - 0.041 12.8 0.1 0.045 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1173) PrlF_antitoxin PF15937.5 gi|347524300|ref|YP_004781870.1| - 0.098 13.1 0.0 0.11 13.0 0.0 1.3 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin FBPase_3 PF01950.16 gi|347524301|ref|YP_004781871.1| - 1.2e-188 626.7 0.0 1.5e-188 626.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ACD PF16671.5 gi|347524301|ref|YP_004781871.1| - 0.17 10.2 0.0 0.27 9.5 0.0 1.2 1 0 0 1 1 1 0 Actin cross-linking domain Pkinase PF00069.25 gi|347524302|ref|YP_004781872.1| - 6e-10 38.9 0.0 7.8e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|347524302|ref|YP_004781872.1| - 1.6e-08 34.8 0.7 0.00055 19.9 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|347524302|ref|YP_004781872.1| - 1.2e-07 31.3 0.0 1.6e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase RIO1 PF01163.22 gi|347524302|ref|YP_004781872.1| - 5.2e-06 26.2 0.0 1e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|347524302|ref|YP_004781872.1| - 4.6e-05 22.9 0.0 7.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.11 gi|347524302|ref|YP_004781872.1| - 0.0052 16.4 0.0 0.0079 15.8 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_fungal PF17667.1 gi|347524302|ref|YP_004781872.1| - 0.041 12.6 0.0 0.045 12.5 0.0 1.1 1 0 0 1 1 1 0 Fungal protein kinase Sua5_yciO_yrdC PF01300.18 gi|347524303|ref|YP_004781873.1| - 4.2e-48 163.2 0.0 8.2e-48 162.3 0.0 1.5 2 0 0 2 2 2 1 Telomere recombination zf-HYPF PF07503.12 gi|347524303|ref|YP_004781873.1| - 3.9e-30 103.3 14.2 2.6e-15 55.9 2.4 2.4 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|347524303|ref|YP_004781873.1| - 4.3e-27 94.8 0.1 6.8e-27 94.2 0.1 1.3 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|347524303|ref|YP_004781873.1| - 1.1e-17 64.2 0.0 2.2e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|347524303|ref|YP_004781873.1| - 0.0051 16.6 0.0 0.076 12.7 0.0 2.1 2 0 0 2 2 2 1 Glycoprotease family Anti-TRAP PF15777.5 gi|347524303|ref|YP_004781873.1| - 0.17 11.9 0.3 0.39 10.7 0.3 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein GAS2 PF02187.17 gi|347524303|ref|YP_004781873.1| - 0.34 11.1 1.1 0.72 10.0 0.3 1.9 2 0 0 2 2 2 0 Growth-Arrest-Specific Protein 2 Domain DZR PF12773.7 gi|347524303|ref|YP_004781873.1| - 3.5 7.7 5.6 70 3.6 5.6 2.3 1 1 0 1 1 1 0 Double zinc ribbon DZR PF12773.7 gi|347524304|ref|YP_004781874.1| - 1.6e-08 34.4 19.7 4.6e-06 26.6 5.9 2.2 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|347524304|ref|YP_004781874.1| - 3.4e-07 29.8 11.8 0.0048 16.6 3.1 3.3 3 0 0 3 3 3 2 zinc-ribbon domain Robl_LC7 PF03259.17 gi|347524304|ref|YP_004781874.1| - 2.8e-06 27.0 1.4 5.2e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Roadblock/LC7 domain UPF0547 PF10571.9 gi|347524304|ref|YP_004781874.1| - 4.1e-06 26.8 15.6 2.3e-05 24.4 5.7 3.3 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|347524304|ref|YP_004781874.1| - 8e-06 25.1 18.7 0.00087 18.6 6.0 3.7 2 1 2 4 4 4 3 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|347524304|ref|YP_004781874.1| - 0.0016 18.1 12.1 0.094 12.4 0.2 3.3 2 1 1 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.12 gi|347524304|ref|YP_004781874.1| - 0.0043 17.0 7.1 0.073 13.1 7.4 2.1 1 1 1 2 2 2 2 zinc-ribbons HypA PF01155.19 gi|347524304|ref|YP_004781874.1| - 0.0095 16.0 10.7 0.14 12.2 1.5 2.3 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|347524304|ref|YP_004781874.1| - 0.0098 15.7 3.2 0.0098 15.7 3.2 2.8 2 1 0 2 2 2 1 HIT zinc finger Zn-ribbon_8 PF09723.10 gi|347524304|ref|YP_004781874.1| - 0.01 15.9 15.3 3.9 7.7 0.3 3.5 1 1 2 3 3 3 0 Zinc ribbon domain PolC_DP2 PF03833.13 gi|347524304|ref|YP_004781874.1| - 0.023 12.6 2.6 0.03 12.2 2.6 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc-ribbon_6 PF10005.9 gi|347524304|ref|YP_004781874.1| - 0.046 14.4 1.2 0.046 14.4 1.2 2.3 1 1 2 3 3 3 0 zinc-ribbon domain LAMTOR5 PF16672.5 gi|347524304|ref|YP_004781874.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 zf_UBZ PF18439.1 gi|347524304|ref|YP_004781874.1| - 0.064 12.9 10.5 0.088 12.4 0.2 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-CHY PF05495.12 gi|347524304|ref|YP_004781874.1| - 0.1 13.1 8.9 0.18 12.3 1.3 2.1 1 1 1 2 2 2 0 CHY zinc finger C1_2 PF03107.16 gi|347524304|ref|YP_004781874.1| - 0.12 12.7 0.9 0.12 12.7 0.9 2.0 1 1 1 2 2 2 0 C1 domain zinc_ribbon_15 PF17032.5 gi|347524304|ref|YP_004781874.1| - 0.25 12.1 10.4 1.6 9.6 10.6 2.1 1 1 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|347524304|ref|YP_004781874.1| - 0.29 11.1 9.0 6.2 6.8 0.2 3.9 2 2 1 3 3 3 0 Nudix N-terminal FdhE PF04216.12 gi|347524304|ref|YP_004781874.1| - 0.3 10.9 1.8 0.48 10.3 1.8 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C3HC4_3 PF13920.6 gi|347524304|ref|YP_004781874.1| - 0.44 10.4 9.9 2.4 8.1 1.0 2.5 1 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2321 PF10083.9 gi|347524304|ref|YP_004781874.1| - 1.3 8.6 4.4 14 5.3 4.9 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-C4_Topoisom PF01396.19 gi|347524304|ref|YP_004781874.1| - 1.8 8.4 14.4 2.5 8.0 0.4 4.0 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger C1_1 PF00130.22 gi|347524304|ref|YP_004781874.1| - 2 8.4 6.0 1.4 8.8 0.2 2.3 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Ogr_Delta PF04606.12 gi|347524304|ref|YP_004781874.1| - 2 8.4 13.3 2.7 8.0 0.3 3.7 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger zf-MYND PF01753.18 gi|347524304|ref|YP_004781874.1| - 2.5 8.3 10.7 7.9 6.7 2.3 2.2 2 0 0 2 2 2 0 MYND finger Cys_rich_CPXG PF14255.6 gi|347524304|ref|YP_004781874.1| - 3 7.8 10.9 1.7 8.6 0.3 3.8 4 0 0 4 4 4 0 Cysteine-rich CPXCG zinc_ribbon_5 PF13719.6 gi|347524304|ref|YP_004781874.1| - 4.2 7.2 11.2 11 5.9 0.2 3.8 4 0 0 4 4 4 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347524304|ref|YP_004781874.1| - 4.7 7.2 11.4 4.5 7.3 1.1 3.0 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|347524304|ref|YP_004781874.1| - 5.9 7.1 14.3 25 5.0 0.2 4.2 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain A2L_zn_ribbon PF08792.10 gi|347524304|ref|YP_004781874.1| - 7.1 6.5 9.6 1.1 9.1 0.5 3.0 2 1 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.11 gi|347524304|ref|YP_004781874.1| - 7.6 6.3 15.6 6.2 6.6 0.3 4.0 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain MutL PF13941.6 gi|347524307|ref|YP_004781877.1| - 0.23 10.0 0.0 0.28 9.7 0.0 1.1 1 0 0 1 1 1 0 MutL protein GH-E PF14410.6 gi|347524307|ref|YP_004781877.1| - 0.23 11.9 0.2 0.69 10.4 0.1 1.7 1 1 1 2 2 2 0 HNH/ENDO VII superfamily nuclease with conserved GHE residues Zn_protease PF05618.11 gi|347524308|ref|YP_004781878.1| - 0.013 15.4 0.2 0.018 14.9 0.2 1.2 1 0 0 1 1 1 0 Putative ATP-dependant zinc protease UPF0552 PF10574.9 gi|347524308|ref|YP_004781878.1| - 0.099 12.0 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 Arp2/3-interacting proteins Arpin Radical_SAM PF04055.21 gi|347524309|ref|YP_004781879.1| - 7.1e-21 75.3 1.7 1.1e-18 68.2 0.0 2.6 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|347524309|ref|YP_004781879.1| - 9.1e-10 38.9 0.0 1.8e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347524309|ref|YP_004781879.1| - 0.0001 22.4 0.0 0.00026 21.1 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain zf-C4pol PF14260.6 gi|347524309|ref|YP_004781879.1| - 0.46 11.0 2.6 2.6 8.6 0.1 2.5 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta ATP_bind_3 PF01171.20 gi|347524311|ref|YP_004781881.1| - 5.6e-14 52.3 0.0 1.1e-11 44.8 0.0 3.2 2 1 0 2 2 2 1 PP-loop family zn-ribbon_14 PF16503.5 gi|347524311|ref|YP_004781881.1| - 0.00085 18.8 0.9 0.00085 18.8 0.9 3.3 4 0 0 4 4 4 1 Zinc-ribbon PAPS_reduct PF01507.19 gi|347524311|ref|YP_004781881.1| - 0.028 14.5 0.0 0.052 13.6 0.0 1.6 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Imm61 PF15598.6 gi|347524311|ref|YP_004781881.1| - 0.038 13.9 0.0 0.27 11.1 0.0 2.2 2 0 0 2 2 2 0 Immunity protein 61 tRNA_Me_trans PF03054.16 gi|347524311|ref|YP_004781881.1| - 0.044 12.6 0.0 0.062 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase ATP-gua_PtransN PF02807.15 gi|347524311|ref|YP_004781881.1| - 0.1 13.0 0.0 0.56 10.6 0.0 2.1 2 0 0 2 2 2 0 ATP:guanido phosphotransferase, N-terminal domain Chordopox_G2 PF05796.12 gi|347524311|ref|YP_004781881.1| - 0.12 11.8 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 Chordopoxvirus protein G2 YyzF PF14116.6 gi|347524311|ref|YP_004781881.1| - 0.75 9.9 4.0 17 5.5 0.1 3.0 3 0 0 3 3 3 0 YyzF-like protein zf-HIT PF04438.16 gi|347524311|ref|YP_004781881.1| - 9.3 6.2 12.3 3.8 7.5 0.3 2.8 3 0 0 3 3 3 0 HIT zinc finger ThiS PF02597.20 gi|347524312|ref|YP_004781882.1| - 6.5e-08 33.1 1.5 7.3e-08 32.9 1.5 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|347524312|ref|YP_004781882.1| - 0.099 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin TFIIB PF00382.19 gi|347524313|ref|YP_004781883.1| - 9.7e-13 48.0 0.3 7.7e-08 32.3 0.0 2.4 2 1 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|347524313|ref|YP_004781883.1| - 9.1e-07 28.3 0.0 1.6e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_Tnp_ISL3 PF13542.6 gi|347524313|ref|YP_004781883.1| - 0.00014 21.2 0.1 0.21 11.0 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|347524313|ref|YP_004781883.1| - 0.00017 21.1 0.2 0.03 13.9 0.0 3.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Auto_anti-p27 PF06677.12 gi|347524313|ref|YP_004781883.1| - 0.0004 20.5 0.4 0.00073 19.6 0.4 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_AsnC-type PF13404.6 gi|347524313|ref|YP_004781883.1| - 0.00072 19.3 6.2 0.14 12.0 1.2 3.6 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain zf-RRN7 PF11781.8 gi|347524313|ref|YP_004781883.1| - 0.00089 18.9 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Sigma70_r4 PF04545.16 gi|347524313|ref|YP_004781883.1| - 0.0014 18.1 0.2 0.8 9.3 0.0 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|347524313|ref|YP_004781883.1| - 0.0015 18.3 6.4 0.043 13.7 0.3 3.7 3 1 1 4 4 3 1 MarR family HTH_28 PF13518.6 gi|347524313|ref|YP_004781883.1| - 0.0027 17.8 2.6 1.7 8.8 0.7 3.1 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_23 PF13384.6 gi|347524313|ref|YP_004781883.1| - 0.0038 17.0 1.1 5.1 7.0 0.0 3.2 3 0 0 3 3 3 2 Homeodomain-like domain DNA_ligase_ZBD PF03119.16 gi|347524313|ref|YP_004781883.1| - 0.0083 16.1 0.8 0.02 14.9 0.8 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Sigma70_r4_2 PF08281.12 gi|347524313|ref|YP_004781883.1| - 0.018 14.7 0.3 6.5 6.5 0.0 3.0 3 0 0 3 3 3 0 Sigma-70, region 4 DUF746 PF05344.11 gi|347524313|ref|YP_004781883.1| - 0.071 13.0 0.0 2.2 8.2 0.0 2.7 3 0 0 3 3 3 0 Domain of Unknown Function (DUF746) HTH_29 PF13551.6 gi|347524313|ref|YP_004781883.1| - 0.075 13.1 0.7 11 6.1 0.0 2.8 3 0 0 3 3 2 0 Winged helix-turn helix MerR PF00376.23 gi|347524313|ref|YP_004781883.1| - 0.085 12.6 0.1 21 5.0 0.0 3.5 3 0 0 3 3 3 0 MerR family regulatory protein MerR_1 PF13411.6 gi|347524313|ref|YP_004781883.1| - 0.12 12.4 0.4 38 4.5 0.0 3.7 4 0 0 4 4 4 0 MerR HTH family regulatory protein HTH_31 PF13560.6 gi|347524313|ref|YP_004781883.1| - 0.13 12.6 6.1 0.54 10.7 0.2 3.5 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|347524313|ref|YP_004781883.1| - 0.44 10.6 2.2 33 4.7 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix Gar1 PF04410.14 gi|347524314|ref|YP_004781884.1| - 5.3e-11 42.5 0.0 6.3e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Bmp PF02608.14 gi|347524315|ref|YP_004781885.1| - 1.3e-28 99.9 0.0 1.8e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like CYYR1 PF10873.8 gi|347524315|ref|YP_004781885.1| - 0.017 15.6 1.1 0.048 14.1 0.1 2.2 2 1 0 2 2 2 0 Cysteine and tyrosine-rich protein 1 ABC_tran PF00005.27 gi|347524316|ref|YP_004781886.1| - 6.5e-36 123.9 0.0 7.3e-22 78.4 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|347524316|ref|YP_004781886.1| - 7.3e-05 22.7 0.0 0.014 15.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|347524316|ref|YP_004781886.1| - 0.00072 19.2 0.1 0.0056 16.4 0.0 2.3 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|347524316|ref|YP_004781886.1| - 0.0069 16.8 0.2 0.099 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|347524316|ref|YP_004781886.1| - 0.0074 16.2 0.1 0.092 12.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|347524316|ref|YP_004781886.1| - 0.015 15.8 0.0 0.025 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|347524316|ref|YP_004781886.1| - 0.039 13.4 0.0 2.3 7.6 0.0 2.9 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|347524316|ref|YP_004781886.1| - 0.048 13.2 0.6 0.32 10.5 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|347524316|ref|YP_004781886.1| - 0.048 13.2 0.0 0.099 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Imm7 PF15585.6 gi|347524316|ref|YP_004781886.1| - 0.055 13.8 0.0 19 5.6 0.0 2.6 2 0 0 2 2 2 0 Immunity protein 7 MukB PF04310.12 gi|347524316|ref|YP_004781886.1| - 0.074 12.8 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal TniB PF05621.11 gi|347524316|ref|YP_004781886.1| - 0.23 10.8 1.0 0.8 9.1 0.1 2.2 3 0 0 3 3 3 0 Bacterial TniB protein BPD_transp_2 PF02653.16 gi|347524317|ref|YP_004781887.1| - 3.9e-30 104.9 36.8 3.9e-30 104.9 36.8 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF2842 PF11003.8 gi|347524317|ref|YP_004781887.1| - 0.015 15.6 3.2 0.015 15.6 3.2 3.9 5 0 0 5 5 5 0 Protein of unknown function (DUF2842) DUF4407 PF14362.6 gi|347524317|ref|YP_004781887.1| - 8.5 5.6 5.4 22 4.3 5.4 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) BPD_transp_2 PF02653.16 gi|347524318|ref|YP_004781888.1| - 7.5e-23 81.0 35.0 1.4e-22 80.2 35.0 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component RNase_HII PF01351.18 gi|347524319|ref|YP_004781889.1| - 3.8e-43 147.6 0.0 4.4e-43 147.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII CxxCxxCC PF03692.15 gi|347524320|ref|YP_004781890.1| - 0.0059 17.3 0.7 0.0059 17.3 0.7 1.8 2 0 0 2 2 2 1 Putative zinc- or iron-chelating domain WW_1 PF18507.1 gi|347524320|ref|YP_004781890.1| - 0.084 12.6 0.1 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 WW domain NPHI_C PF08469.10 gi|347524321|ref|YP_004781891.1| - 0.16 12.0 0.0 0.53 10.2 0.0 1.9 1 0 0 1 1 1 0 Nucleoside triphosphatase I C-terminal QRPTase_C PF01729.19 gi|347524322|ref|YP_004781892.1| - 1.8e-27 96.2 0.0 3e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|347524322|ref|YP_004781892.1| - 4.8e-06 26.5 0.0 1e-05 25.5 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|347524322|ref|YP_004781892.1| - 0.00011 22.6 0.0 0.00023 21.6 0.0 1.4 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|347524322|ref|YP_004781892.1| - 0.00059 20.2 0.0 0.089 13.2 0.0 2.2 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Thioredoxin PF00085.20 gi|347524323|ref|YP_004781893.1| - 7.1e-22 77.4 0.0 9.1e-22 77.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin OST3_OST6 PF04756.13 gi|347524323|ref|YP_004781893.1| - 3.6e-12 46.2 0.0 4.4e-12 46.0 0.0 1.0 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_2 PF13098.6 gi|347524323|ref|YP_004781893.1| - 6.3e-10 39.5 0.3 2.6e-09 37.5 0.3 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|347524323|ref|YP_004781893.1| - 3.7e-06 27.2 0.2 0.015 15.6 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|347524323|ref|YP_004781893.1| - 0.0007 19.6 0.1 0.0015 18.6 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|347524323|ref|YP_004781893.1| - 0.0024 17.7 0.0 0.0083 16.0 0.0 1.9 1 1 0 1 1 1 1 F plasmid transfer operon protein Calsequestrin PF01216.17 gi|347524323|ref|YP_004781893.1| - 0.0034 16.5 0.0 0.0039 16.3 0.0 1.0 1 0 0 1 1 1 1 Calsequestrin Thioredoxin_7 PF13899.6 gi|347524323|ref|YP_004781893.1| - 0.006 16.7 0.1 0.02 15.1 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|347524323|ref|YP_004781893.1| - 0.0092 15.7 0.1 0.025 14.4 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_5 PF13743.6 gi|347524323|ref|YP_004781893.1| - 0.015 14.9 2.1 0.29 10.8 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_6 PF13848.6 gi|347524323|ref|YP_004781893.1| - 0.016 15.1 0.1 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin-like domain HyaE PF07449.11 gi|347524323|ref|YP_004781893.1| - 0.057 13.4 0.0 0.13 12.3 0.0 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Glutaredoxin PF00462.24 gi|347524323|ref|YP_004781893.1| - 0.1 12.9 0.7 0.59 10.4 0.7 2.2 1 1 0 1 1 1 0 Glutaredoxin DUF4346 PF14251.6 gi|347524325|ref|YP_004781895.1| - 0.0022 18.0 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) Peptidase_C65 PF10275.9 gi|347524325|ref|YP_004781895.1| - 0.054 12.9 0.0 0.085 12.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase C65 Otubain Aldo_ket_red PF00248.21 gi|347524326|ref|YP_004781896.1| - 3.4e-63 213.6 0.0 3.9e-63 213.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GTP_EFTU PF00009.27 gi|347524327|ref|YP_004781897.1| - 4.5e-66 222.1 0.1 6.6e-66 221.6 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|347524327|ref|YP_004781897.1| - 5e-31 107.0 0.1 3.4e-29 101.1 0.0 3.4 2 1 1 3 3 3 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|347524327|ref|YP_004781897.1| - 2.2e-24 85.3 0.0 6.2e-24 83.8 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|347524327|ref|YP_004781897.1| - 3.4e-23 81.5 0.0 8.4e-23 80.3 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|347524327|ref|YP_004781897.1| - 4.1e-14 52.7 0.0 1.3e-13 51.1 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|347524327|ref|YP_004781897.1| - 4.7e-05 23.4 0.1 0.00011 22.3 0.1 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase HIGH_NTase1_ass PF16581.5 gi|347524327|ref|YP_004781897.1| - 0.0055 16.7 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 Cytidyltransferase-related C-terminal region RPW8 PF05659.11 gi|347524327|ref|YP_004781897.1| - 0.11 12.1 0.2 9.5 5.9 0.1 2.5 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 PDZ_6 PF17820.1 gi|347524328|ref|YP_004781898.1| - 3.4e-14 52.4 0.3 7e-14 51.4 0.3 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|347524328|ref|YP_004781898.1| - 9.6e-14 51.5 0.1 2.1e-13 50.4 0.1 1.5 1 0 0 1 1 1 1 PDZ domain Peptidase_M50 PF02163.22 gi|347524328|ref|YP_004781898.1| - 3.6e-13 49.4 8.3 3.2e-12 46.2 8.3 2.4 1 1 0 1 1 1 1 Peptidase family M50 PDZ PF00595.24 gi|347524328|ref|YP_004781898.1| - 7.4e-09 35.8 0.0 1.4e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 PDZ domain DUF2938 PF11158.8 gi|347524328|ref|YP_004781898.1| - 0.0018 17.8 1.6 0.0036 16.8 1.6 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2938) GRASP55_65 PF04495.14 gi|347524328|ref|YP_004781898.1| - 0.0043 17.4 0.0 0.0075 16.6 0.0 1.4 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_M36 PF02128.15 gi|347524328|ref|YP_004781898.1| - 0.026 13.7 0.0 0.037 13.2 0.0 1.1 1 0 0 1 1 1 0 Fungalysin metallopeptidase (M36) Tricorn_PDZ PF14685.6 gi|347524328|ref|YP_004781898.1| - 0.029 14.4 0.1 0.056 13.4 0.1 1.5 1 0 0 1 1 1 0 Tricorn protease PDZ domain TNFR_16_TM PF18422.1 gi|347524328|ref|YP_004781898.1| - 5.1 7.1 5.3 19 5.3 3.6 2.7 1 1 1 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain UPF0020 PF01170.18 gi|347524329|ref|YP_004781899.1| - 1.6e-28 99.8 0.0 1.3e-27 96.8 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|347524329|ref|YP_004781899.1| - 4.2e-06 26.5 0.0 6.5e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|347524329|ref|YP_004781899.1| - 2.9e-05 24.7 0.0 8.2e-05 23.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347524329|ref|YP_004781899.1| - 3.5e-05 24.4 0.1 0.00022 21.8 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|347524329|ref|YP_004781899.1| - 0.0032 16.8 0.0 0.0051 16.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family AhpC-TSA_2 PF13911.6 gi|347524329|ref|YP_004781899.1| - 0.0062 16.6 0.0 0.99 9.5 0.0 2.3 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme MTS PF05175.14 gi|347524329|ref|YP_004781899.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain AviRa PF11599.8 gi|347524329|ref|YP_004781899.1| - 0.21 11.1 0.0 2.1 7.8 0.0 1.9 1 1 1 2 2 2 0 RRNA methyltransferase AviRa ERCC4 PF02732.15 gi|347524330|ref|YP_004781900.1| - 1e-24 87.5 0.0 1.4e-24 87.1 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|347524330|ref|YP_004781900.1| - 5.8e-09 36.4 0.0 2e-08 34.7 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|347524330|ref|YP_004781900.1| - 5e-05 23.3 0.0 0.00012 22.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|347524330|ref|YP_004781900.1| - 0.006 16.4 0.1 0.02 14.7 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|347524330|ref|YP_004781900.1| - 0.015 15.9 0.0 0.029 15.0 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|347524330|ref|YP_004781900.1| - 0.02 15.1 0.0 0.42 10.9 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|347524330|ref|YP_004781900.1| - 0.052 13.9 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|347524330|ref|YP_004781900.1| - 0.071 13.4 0.0 0.15 12.3 0.0 1.7 1 1 0 1 1 1 0 Pathogenicity locus IMS_HHH PF11798.8 gi|347524330|ref|YP_004781900.1| - 0.12 12.7 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif Radical_SAM PF04055.21 gi|347524331|ref|YP_004781901.1| - 4.8e-19 69.3 0.0 9.4e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|347524331|ref|YP_004781901.1| - 0.11 12.5 0.0 20 5.3 0.0 2.4 2 0 0 2 2 2 0 B12 binding domain ACT_7 PF13840.6 gi|347524332|ref|YP_004781902.1| - 0.042 13.7 0.2 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 ACT domain DUF5320 PF17253.2 gi|347524333|ref|YP_004781903.1| - 1.3e-05 26.1 0.0 1.6e-05 25.9 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5320) XhlA PF10779.9 gi|347524333|ref|YP_004781903.1| - 0.012 15.8 0.6 0.012 15.8 0.6 1.6 2 0 0 2 2 2 0 Haemolysin XhlA Syntaxin-6_N PF09177.11 gi|347524333|ref|YP_004781903.1| - 0.031 14.8 0.2 0.036 14.6 0.2 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF3450 PF11932.8 gi|347524333|ref|YP_004781903.1| - 0.049 12.9 0.1 0.057 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) CdvA PF18822.1 gi|347524333|ref|YP_004781903.1| - 0.066 13.0 3.0 0.076 12.8 3.0 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain TPD52 PF04201.15 gi|347524333|ref|YP_004781903.1| - 0.15 11.6 1.6 0.18 11.4 1.6 1.0 1 0 0 1 1 1 0 Tumour protein D52 family PKcGMP_CC PF16808.5 gi|347524333|ref|YP_004781903.1| - 0.44 10.4 8.3 0.74 9.7 8.3 1.5 1 1 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase EccE PF11203.8 gi|347524334|ref|YP_004781904.1| - 0.0091 16.3 0.2 0.011 16.0 0.2 1.3 1 1 0 1 1 1 1 Putative type VII ESX secretion system translocon, EccE DUF2204 PF09970.9 gi|347524335|ref|YP_004781905.1| - 0.0016 18.1 0.3 0.13 11.8 0.1 2.3 2 0 0 2 2 2 2 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|347524335|ref|YP_004781905.1| - 0.004 16.8 0.9 0.086 12.4 0.9 2.3 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase Med12-LCEWAV PF12145.8 gi|347524335|ref|YP_004781905.1| - 0.14 10.9 0.1 0.18 10.6 0.1 1.1 1 0 0 1 1 1 0 Eukaryotic Mediator 12 subunit domain tRNA-synt_1b PF00579.25 gi|347524336|ref|YP_004781906.1| - 5.2e-42 144.2 0.0 6.7e-42 143.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) CBS PF00571.28 gi|347524337|ref|YP_004781907.1| - 1.9e-33 114.7 7.4 6.9e-17 61.6 0.2 2.2 2 0 0 2 2 2 2 CBS domain Septin PF00735.18 gi|347524337|ref|YP_004781907.1| - 0.084 12.1 0.1 0.64 9.2 0.0 1.9 1 1 1 2 2 2 0 Septin UPF0113 PF03657.13 gi|347524337|ref|YP_004781907.1| - 0.14 12.4 0.1 1.1 9.6 0.1 2.3 1 1 0 1 1 1 0 UPF0113 PUA domain Plk4_PB1 PF18190.1 gi|347524337|ref|YP_004781907.1| - 0.16 12.1 1.0 0.24 11.6 1.0 1.4 1 1 0 1 1 1 0 Polo-like Kinase 4 Polo Box 1 Radical_SAM PF04055.21 gi|347524338|ref|YP_004781908.1| - 0.0031 17.9 1.1 0.01 16.2 1.1 1.9 1 1 0 1 1 1 1 Radical SAM superfamily NADH_4Fe-4S PF10589.9 gi|347524338|ref|YP_004781908.1| - 0.2 11.8 0.1 0.39 10.8 0.1 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PaREP1 PF05942.11 gi|347524339|ref|YP_004781909.1| - 2.5e-27 95.1 2.5 4e-27 94.4 2.5 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SesA PF17107.5 gi|347524339|ref|YP_004781909.1| - 0.14 12.3 0.9 0.63 10.2 0.3 2.1 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases T3SS_needle_E PF08988.10 gi|347524339|ref|YP_004781909.1| - 9.7 6.4 8.2 2.7 8.2 1.4 2.6 2 1 1 3 3 3 0 Type III secretion system, cytoplasmic E component of needle Aminotran_3 PF00202.21 gi|347524340|ref|YP_004781910.1| - 1.5e-99 333.4 0.0 2e-99 333.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|347524340|ref|YP_004781910.1| - 0.0015 17.5 0.0 0.056 12.4 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|347524340|ref|YP_004781910.1| - 0.0017 17.6 0.0 0.0024 17.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|347524340|ref|YP_004781910.1| - 0.03 13.6 0.0 0.05 12.9 0.0 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase ThiS PF02597.20 gi|347524341|ref|YP_004781911.1| - 2.3e-17 63.4 0.0 2.8e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 ThiS family DUF61 PF01886.16 gi|347524341|ref|YP_004781911.1| - 0.046 13.8 0.0 0.058 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF61 Ub-Mut7C PF14451.6 gi|347524341|ref|YP_004781911.1| - 0.092 12.6 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 Mut7-C ubiquitin SLBB PF10531.9 gi|347524341|ref|YP_004781911.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 SLBB domain TrkA_C PF02080.21 gi|347524341|ref|YP_004781911.1| - 0.14 12.0 0.3 0.27 11.1 0.1 1.6 2 0 0 2 2 2 0 TrkA-C domain TGS PF02824.21 gi|347524341|ref|YP_004781911.1| - 0.17 11.9 0.0 24 5.0 0.0 2.2 2 0 0 2 2 2 0 TGS domain ThiS-like PF14453.6 gi|347524341|ref|YP_004781911.1| - 0.19 11.8 0.0 16 5.6 0.0 2.8 2 1 1 3 3 3 0 ThiS-like ubiquitin DUF104 PF01954.16 gi|347524342|ref|YP_004781912.1| - 1.9e-13 50.6 3.9 2.5e-13 50.3 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 ThiS PF02597.20 gi|347524343|ref|YP_004781913.1| - 3e-07 31.0 0.0 3.9e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|347524343|ref|YP_004781913.1| - 0.00031 21.0 0.0 0.00038 20.8 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TrkA_C PF02080.21 gi|347524343|ref|YP_004781913.1| - 0.04 13.8 0.2 1.4 8.8 0.1 2.2 1 1 1 2 2 2 0 TrkA-C domain AFOR_C PF01314.18 gi|347524344|ref|YP_004781914.1| - 3.2e-138 460.9 0.0 4e-138 460.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|347524344|ref|YP_004781914.1| - 1.2e-72 244.0 0.1 1.9e-72 243.3 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain BMF PF15185.6 gi|347524345|ref|YP_004781915.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Bcl-2-modifying factor, apoptosis Nop PF01798.18 gi|347524346|ref|YP_004781916.1| - 2.6e-74 249.5 0.0 3.4e-74 249.2 0.0 1.1 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin DUF3173 PF11372.8 gi|347524346|ref|YP_004781916.1| - 0.00033 20.5 0.1 0.00089 19.1 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3173) HhH-GPD PF00730.25 gi|347524346|ref|YP_004781916.1| - 0.1 13.1 0.2 0.34 11.4 0.2 2.2 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein RuvA_C PF07499.13 gi|347524346|ref|YP_004781916.1| - 0.21 12.0 1.8 1.2 9.6 0.1 3.1 4 0 0 4 4 4 0 RuvA, C-terminal domain HTH_45 PF14947.6 gi|347524347|ref|YP_004781917.1| - 5.1e-10 39.2 0.0 9.8e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|347524347|ref|YP_004781917.1| - 0.013 15.4 0.0 0.3 11.0 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.29 gi|347524349|ref|YP_004781919.1| - 3.9e-43 147.0 0.0 9.8e-43 145.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|347524349|ref|YP_004781919.1| - 2.8e-15 55.8 0.2 8.6e-15 54.3 0.2 1.8 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|347524349|ref|YP_004781919.1| - 7e-10 38.7 0.6 1.7e-09 37.5 0.6 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain Prot_ATP_OB_N PF17758.1 gi|347524349|ref|YP_004781919.1| - 5.1e-07 29.2 0.5 1.7e-06 27.5 0.5 1.9 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_2 PF07724.14 gi|347524349|ref|YP_004781919.1| - 1.1e-06 28.9 0.0 3.6e-06 27.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|347524349|ref|YP_004781919.1| - 3.5e-06 27.1 0.3 2.8e-05 24.2 0.3 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|347524349|ref|YP_004781919.1| - 5.3e-06 26.9 1.8 0.0009 19.7 0.1 3.0 3 1 1 4 4 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|347524349|ref|YP_004781919.1| - 1.5e-05 24.8 0.0 3.3e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|347524349|ref|YP_004781919.1| - 0.00011 22.4 1.8 0.02 15.2 0.1 3.4 3 1 1 4 4 3 1 AAA domain DUF815 PF05673.13 gi|347524349|ref|YP_004781919.1| - 0.00017 20.8 0.0 0.0033 16.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_lid_2 PF17863.1 gi|347524349|ref|YP_004781919.1| - 0.00083 19.1 0.0 0.0025 17.6 0.0 1.8 1 0 0 1 1 1 1 AAA lid domain ABC_tran PF00005.27 gi|347524349|ref|YP_004781919.1| - 0.0015 19.0 0.0 0.0043 17.6 0.0 1.8 2 0 0 2 2 1 1 ABC transporter bZIP_1 PF00170.21 gi|347524349|ref|YP_004781919.1| - 0.0024 17.9 3.7 0.003 17.6 2.2 1.9 2 0 0 2 2 1 1 bZIP transcription factor AAA_28 PF13521.6 gi|347524349|ref|YP_004781919.1| - 0.0032 17.7 0.0 0.0032 17.7 0.0 2.0 3 0 0 3 3 1 1 AAA domain Mg_chelatase PF01078.21 gi|347524349|ref|YP_004781919.1| - 0.0032 16.9 0.0 0.0075 15.7 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|347524349|ref|YP_004781919.1| - 0.0039 17.7 0.1 0.013 16.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 gi|347524349|ref|YP_004781919.1| - 0.005 16.9 0.0 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|347524349|ref|YP_004781919.1| - 0.0059 17.0 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|347524349|ref|YP_004781919.1| - 0.006 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|347524349|ref|YP_004781919.1| - 0.0076 15.5 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|347524349|ref|YP_004781919.1| - 0.011 15.9 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347524349|ref|YP_004781919.1| - 0.014 15.4 0.2 0.23 11.4 0.0 2.2 1 1 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|347524349|ref|YP_004781919.1| - 0.017 14.4 0.0 0.036 13.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ATPase_2 PF01637.18 gi|347524349|ref|YP_004781919.1| - 0.018 15.0 0.2 0.2 11.5 0.0 2.2 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|347524349|ref|YP_004781919.1| - 0.023 14.4 0.0 0.054 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|347524349|ref|YP_004781919.1| - 0.024 15.1 0.8 0.085 13.3 0.2 2.4 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|347524349|ref|YP_004781919.1| - 0.034 13.7 0.2 0.26 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|347524349|ref|YP_004781919.1| - 0.04 13.8 0.0 3.3 7.5 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein ATPase PF06745.13 gi|347524349|ref|YP_004781919.1| - 0.078 12.3 0.2 0.32 10.3 0.0 2.1 3 0 0 3 3 3 0 KaiC Rad17 PF03215.15 gi|347524349|ref|YP_004781919.1| - 0.11 12.5 0.1 0.27 11.1 0.1 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|347524349|ref|YP_004781919.1| - 0.12 11.9 0.0 0.27 10.7 0.0 1.6 1 1 0 1 1 1 0 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|347524349|ref|YP_004781919.1| - 0.12 12.3 0.1 2.6 7.9 0.0 2.7 3 0 0 3 3 2 0 NTPase V-SNARE PF05008.15 gi|347524349|ref|YP_004781919.1| - 0.13 12.7 1.0 0.3 11.5 1.0 1.6 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus SOGA PF11365.8 gi|347524349|ref|YP_004781919.1| - 0.14 13.3 2.3 0.32 12.2 2.3 1.6 1 0 0 1 1 1 0 Protein SOGA TSC22 PF01166.18 gi|347524349|ref|YP_004781919.1| - 0.18 12.1 5.4 7.2 7.0 2.4 2.4 2 0 0 2 2 2 0 TSC-22/dip/bun family Rbsn PF11464.8 gi|347524349|ref|YP_004781919.1| - 0.19 11.5 1.5 18 5.2 0.6 2.5 2 0 0 2 2 2 0 Rabenosyn Rab binding domain Parvo_NS1 PF01057.17 gi|347524349|ref|YP_004781919.1| - 0.27 10.3 0.0 0.45 9.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CENP-Q PF13094.6 gi|347524349|ref|YP_004781919.1| - 0.51 10.5 2.5 0.61 10.3 1.3 1.7 2 0 0 2 2 1 0 CENP-Q, a CENPA-CAD centromere complex subunit GWT1 PF06423.12 gi|347524350|ref|YP_004781920.1| - 0.002 18.2 2.4 0.0021 18.2 2.4 1.0 1 0 0 1 1 1 1 GWT1 DUF2818 PF10993.8 gi|347524350|ref|YP_004781920.1| - 0.083 13.5 2.6 0.098 13.2 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2818) MARVEL PF01284.23 gi|347524350|ref|YP_004781920.1| - 0.12 12.4 5.1 0.14 12.2 5.1 1.0 1 0 0 1 1 1 0 Membrane-associating domain ASFV_J13L PF05568.11 gi|347524350|ref|YP_004781920.1| - 0.85 9.3 2.6 0.86 9.3 2.6 1.2 1 0 0 1 1 1 0 African swine fever virus J13L protein TraG_N PF07916.11 gi|347524350|ref|YP_004781920.1| - 1.2 7.9 4.9 1.2 7.9 4.9 1.0 1 0 0 1 1 1 0 TraG-like protein, N-terminal region Trp_oprn_chp PF09534.10 gi|347524350|ref|YP_004781920.1| - 2.8 7.7 10.8 0.28 11.0 5.7 1.7 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Gemini_mov PF01708.16 gi|347524350|ref|YP_004781920.1| - 3.5 7.4 7.0 1.4 8.7 5.0 1.5 1 1 1 2 2 2 0 Geminivirus putative movement protein DUF3810 PF12725.7 gi|347524350|ref|YP_004781920.1| - 8.2 5.7 5.2 8.8 5.6 5.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Glyco_hydro_130 PF04041.13 gi|347524351|ref|YP_004781921.1| - 2.7e-73 246.7 0.0 3.2e-73 246.5 0.0 1.0 1 0 0 1 1 1 1 beta-1,4-mannooligosaccharide phosphorylase MazG PF03819.17 gi|347524352|ref|YP_004781922.1| - 0.00044 20.4 1.4 0.0007 19.7 1.4 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|347524352|ref|YP_004781922.1| - 0.0022 18.4 2.8 0.0022 18.4 1.5 1.6 2 0 0 2 2 2 1 Phosphoribosyl-ATP pyrophosphohydrolase Histone_HNS PF00816.21 gi|347524352|ref|YP_004781922.1| - 0.004 18.0 0.6 0.009 16.8 0.3 1.7 1 1 1 2 2 2 1 H-NS histone family DUF1442 PF07279.11 gi|347524352|ref|YP_004781922.1| - 0.078 12.3 0.0 0.085 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) FAINT PF04385.15 gi|347524352|ref|YP_004781922.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, DUF529 DUF498 PF04430.14 gi|347524353|ref|YP_004781923.1| - 6.9e-07 29.3 0.0 9.1e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) HD PF01966.22 gi|347524354|ref|YP_004781924.1| - 2e-09 37.7 0.0 4.5e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|347524354|ref|YP_004781924.1| - 1.2e-06 27.8 1.0 5.7e-06 25.5 1.0 2.0 1 1 0 1 1 1 1 Putative helicase HD_2 PF12917.7 gi|347524354|ref|YP_004781924.1| - 0.0013 18.6 0.0 0.0031 17.3 0.0 1.6 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme RNA_pol_Rpb6 PF01192.22 gi|347524354|ref|YP_004781924.1| - 0.48 10.4 2.4 19 5.2 3.1 2.6 2 0 0 2 2 2 0 RNA polymerase Rpb6 BPD_transp_2 PF02653.16 gi|347524355|ref|YP_004781925.1| - 1.2e-23 83.6 44.0 1.2e-23 83.6 44.0 2.0 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component MrpF_PhaF PF04066.13 gi|347524355|ref|YP_004781925.1| - 0.012 16.0 3.4 0.012 16.0 3.4 5.6 6 1 1 7 7 7 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABC_tran PF00005.27 gi|347524356|ref|YP_004781926.1| - 1.8e-32 112.7 0.0 2.5e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347524356|ref|YP_004781926.1| - 1.5e-10 41.4 0.1 0.00012 22.0 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|347524356|ref|YP_004781926.1| - 7e-10 38.6 0.4 1.3e-09 37.8 0.4 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|347524356|ref|YP_004781926.1| - 6.5e-08 32.3 0.0 0.0069 15.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|347524356|ref|YP_004781926.1| - 7.1e-06 26.7 0.1 1.1e-05 26.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|347524356|ref|YP_004781926.1| - 0.00011 21.9 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|347524356|ref|YP_004781926.1| - 0.00054 19.8 0.0 0.0022 17.7 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|347524356|ref|YP_004781926.1| - 0.0022 17.8 0.4 0.018 14.7 0.1 2.1 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|347524356|ref|YP_004781926.1| - 0.0029 17.5 0.1 0.081 12.8 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|347524356|ref|YP_004781926.1| - 0.0038 16.9 0.1 0.01 15.5 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|347524356|ref|YP_004781926.1| - 0.0077 16.5 0.1 0.049 13.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347524356|ref|YP_004781926.1| - 0.0094 16.4 0.0 0.065 13.7 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|347524356|ref|YP_004781926.1| - 0.0097 15.8 0.1 0.016 15.1 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|347524356|ref|YP_004781926.1| - 0.014 15.5 0.3 0.034 14.2 0.3 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.14 gi|347524356|ref|YP_004781926.1| - 0.02 14.8 0.1 0.8 9.6 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|347524356|ref|YP_004781926.1| - 0.031 13.9 0.1 0.061 12.9 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|347524356|ref|YP_004781926.1| - 0.034 14.5 0.0 0.068 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|347524356|ref|YP_004781926.1| - 0.035 13.4 0.1 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|347524356|ref|YP_004781926.1| - 0.038 13.6 0.1 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|347524356|ref|YP_004781926.1| - 0.04 13.0 0.1 0.069 12.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|347524356|ref|YP_004781926.1| - 0.04 13.6 0.1 0.097 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|347524356|ref|YP_004781926.1| - 0.066 13.4 0.3 0.15 12.3 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|347524356|ref|YP_004781926.1| - 0.11 12.6 0.1 0.23 11.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347524356|ref|YP_004781926.1| - 0.13 12.2 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|347524356|ref|YP_004781926.1| - 0.18 11.8 0.0 0.78 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|347524356|ref|YP_004781926.1| - 0.2 11.2 0.1 0.39 10.3 0.0 1.4 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|347524356|ref|YP_004781926.1| - 0.23 11.2 0.1 0.4 10.4 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|347524356|ref|YP_004781926.1| - 0.24 10.7 1.2 2.3 7.5 0.4 2.1 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.27 gi|347524357|ref|YP_004781927.1| - 4.6e-29 101.7 0.0 6.5e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347524357|ref|YP_004781927.1| - 3.5e-17 63.2 0.2 2.4e-07 30.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347524357|ref|YP_004781927.1| - 2.9e-06 26.9 0.1 0.0016 17.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|347524357|ref|YP_004781927.1| - 8.5e-06 25.4 0.0 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|347524357|ref|YP_004781927.1| - 1.1e-05 25.3 0.0 0.00045 20.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|347524357|ref|YP_004781927.1| - 5.2e-05 23.8 0.1 9e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|347524357|ref|YP_004781927.1| - 7e-05 22.5 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|347524357|ref|YP_004781927.1| - 7.4e-05 21.7 0.5 0.011 14.5 0.1 2.6 2 1 1 3 3 3 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|347524357|ref|YP_004781927.1| - 0.00041 20.8 0.1 0.00094 19.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|347524357|ref|YP_004781927.1| - 0.0013 18.2 0.1 0.22 10.9 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|347524357|ref|YP_004781927.1| - 0.0026 17.5 0.2 0.0055 16.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|347524357|ref|YP_004781927.1| - 0.0066 16.7 0.1 0.077 13.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|347524357|ref|YP_004781927.1| - 0.016 15.2 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|347524357|ref|YP_004781927.1| - 0.02 15.1 0.1 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|347524357|ref|YP_004781927.1| - 0.022 14.3 0.3 0.094 12.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|347524357|ref|YP_004781927.1| - 0.028 13.4 0.0 0.051 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.29 gi|347524357|ref|YP_004781927.1| - 0.044 14.2 0.1 0.27 11.7 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|347524357|ref|YP_004781927.1| - 0.071 13.2 0.1 0.35 10.9 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|347524357|ref|YP_004781927.1| - 0.15 12.0 0.1 0.29 11.0 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 gi|347524357|ref|YP_004781927.1| - 0.21 11.3 0.0 5.4 6.7 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain cobW PF02492.19 gi|347524357|ref|YP_004781927.1| - 0.22 11.1 0.3 0.47 10.0 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GFO_IDH_MocA PF01408.22 gi|347524358|ref|YP_004781928.1| - 2.1e-20 73.7 0.0 4.8e-20 72.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|347524358|ref|YP_004781928.1| - 0.0081 16.6 0.3 0.035 14.6 0.1 2.1 2 1 0 2 2 2 1 CoA binding domain GFO_IDH_MocA_C PF02894.17 gi|347524358|ref|YP_004781928.1| - 0.02 14.9 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|347524358|ref|YP_004781928.1| - 0.12 13.1 0.0 0.23 12.2 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain NTPase_1 PF03266.15 gi|347524359|ref|YP_004781929.1| - 1.4e-50 171.5 0.0 1.6e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|347524359|ref|YP_004781929.1| - 4e-06 26.7 0.0 6.5e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|347524359|ref|YP_004781929.1| - 1.1e-05 25.9 0.0 1.6e-05 25.4 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|347524359|ref|YP_004781929.1| - 0.00014 22.1 0.1 0.00036 20.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain DUF2478 PF10649.9 gi|347524359|ref|YP_004781929.1| - 0.00015 21.4 0.3 0.00054 19.6 0.3 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) MeaB PF03308.16 gi|347524359|ref|YP_004781929.1| - 0.00026 20.1 0.9 0.00049 19.2 0.3 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|347524359|ref|YP_004781929.1| - 0.00073 19.6 0.0 0.003 17.6 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|347524359|ref|YP_004781929.1| - 0.00097 19.1 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea MobB PF03205.14 gi|347524359|ref|YP_004781929.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|347524359|ref|YP_004781929.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|347524359|ref|YP_004781929.1| - 0.0015 17.8 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.6 gi|347524359|ref|YP_004781929.1| - 0.0037 17.8 0.0 0.0051 17.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|347524359|ref|YP_004781929.1| - 0.011 16.0 0.1 0.035 14.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|347524359|ref|YP_004781929.1| - 0.012 16.0 0.3 0.017 15.5 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain RuvB_N PF05496.12 gi|347524359|ref|YP_004781929.1| - 0.014 15.2 0.0 0.53 10.0 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|347524359|ref|YP_004781929.1| - 0.016 15.2 0.4 1 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|347524359|ref|YP_004781929.1| - 0.038 13.6 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|347524359|ref|YP_004781929.1| - 0.041 14.4 0.0 0.067 13.7 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|347524359|ref|YP_004781929.1| - 0.05 13.8 0.1 0.088 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|347524359|ref|YP_004781929.1| - 0.069 13.4 0.2 0.13 12.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.6 gi|347524359|ref|YP_004781929.1| - 0.088 12.8 0.0 0.38 10.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain FeoB_N PF02421.18 gi|347524359|ref|YP_004781929.1| - 0.092 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B KTI12 PF08433.10 gi|347524359|ref|YP_004781929.1| - 0.1 12.1 0.1 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 Chromatin associated protein KTI12 RsgA_GTPase PF03193.16 gi|347524359|ref|YP_004781929.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|347524359|ref|YP_004781929.1| - 0.11 12.1 0.0 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|347524359|ref|YP_004781929.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DnaB_C PF03796.15 gi|347524359|ref|YP_004781929.1| - 0.2 11.0 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|347524359|ref|YP_004781929.1| - 0.22 10.7 0.0 0.28 10.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|347524359|ref|YP_004781929.1| - 0.26 11.0 0.0 0.41 10.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|347524359|ref|YP_004781929.1| - 0.26 11.0 0.1 0.42 10.3 0.1 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Glycos_transf_3 PF00591.21 gi|347524360|ref|YP_004781930.1| - 2.1e-79 266.7 0.0 2.8e-79 266.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|347524360|ref|YP_004781930.1| - 2.2e-15 56.2 0.1 4.8e-15 55.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain CBS PF00571.28 gi|347524362|ref|YP_004781932.1| - 8.9e-54 179.8 9.2 2.6e-14 53.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.14 gi|347524362|ref|YP_004781932.1| - 3.8e-05 24.1 0.9 0.25 11.8 0.1 3.4 2 1 1 3 3 3 3 Ribosomal protein L9, C-terminal domain DUF4835 PF16119.5 gi|347524362|ref|YP_004781932.1| - 0.04 13.0 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4835) CBS PF00571.28 gi|347524363|ref|YP_004781933.1| - 1.5e-41 140.7 5.6 1.3e-10 41.6 0.1 4.1 4 0 0 4 4 4 4 CBS domain Acetyltransf_1 PF00583.25 gi|347524363|ref|YP_004781933.1| - 0.0052 17.0 0.1 24 5.2 0.0 3.8 1 1 1 3 3 3 2 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|347524363|ref|YP_004781933.1| - 0.032 14.3 0.0 0.62 10.1 0.0 2.6 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|347524363|ref|YP_004781933.1| - 0.16 11.9 0.1 61 3.6 0.0 3.4 4 0 0 4 4 4 0 Acetyltransferase (GNAT) domain MFS_1 PF07690.16 gi|347524364|ref|YP_004781934.1| - 1.8e-11 43.6 46.3 2.4e-11 43.2 46.3 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Q_salvage PF10343.9 gi|347524366|ref|YP_004781936.1| - 0.00022 20.9 0.0 0.00032 20.4 0.0 1.1 1 0 0 1 1 1 1 Potential Queuosine, Q, salvage protein family AGOG PF09171.10 gi|347524366|ref|YP_004781936.1| - 0.005 16.2 0.0 0.0078 15.6 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase HhH-GPD PF00730.25 gi|347524366|ref|YP_004781936.1| - 0.23 11.9 0.0 1.3 9.6 0.0 2.0 2 0 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein PIN PF01850.21 gi|347524368|ref|YP_004781938.1| - 7e-17 62.1 1.6 8.5e-17 61.8 1.6 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|347524368|ref|YP_004781938.1| - 0.051 14.3 0.3 0.065 14.0 0.3 1.2 1 0 0 1 1 1 0 PIN domain DUF4817 PF16087.5 gi|347524368|ref|YP_004781938.1| - 0.093 12.6 0.1 13 5.7 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) IMS_C PF11799.8 gi|347524368|ref|YP_004781938.1| - 0.14 12.8 1.6 0.23 12.2 1.6 1.7 1 1 0 1 1 1 0 impB/mucB/samB family C-terminal domain S4 PF01479.25 gi|347524369|ref|YP_004781939.1| - 0.017 14.8 1.8 2.9 7.7 0.0 3.5 3 1 1 4 4 4 0 S4 domain PIN PF01850.21 gi|347524370|ref|YP_004781940.1| - 4.7e-13 49.7 0.0 5.1e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 PIN domain XPC-binding PF09280.11 gi|347524371|ref|YP_004781941.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 XPC-binding domain PIN PF01850.21 gi|347524371|ref|YP_004781941.1| - 0.015 15.8 0.0 0.015 15.8 0.0 1.0 1 0 0 1 1 1 0 PIN domain RXLR_WY PF18634.1 gi|347524371|ref|YP_004781941.1| - 0.06 13.3 0.1 0.065 13.2 0.1 1.1 1 0 0 1 1 1 0 RXLR phytopathogen effector protein WY-domain DUF104 PF01954.16 gi|347524372|ref|YP_004781942.1| - 1.2e-20 73.7 7.0 1.3e-20 73.6 7.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Na_Ca_ex PF01699.24 gi|347524373|ref|YP_004781943.1| - 2.2e-07 30.9 36.0 8.3e-05 22.6 10.2 2.4 3 0 0 3 3 3 2 Sodium/calcium exchanger protein MFS_1 PF07690.16 gi|347524374|ref|YP_004781944.1| - 2.2e-09 36.7 27.6 2.2e-09 36.7 27.6 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily YrhC PF14143.6 gi|347524374|ref|YP_004781944.1| - 0.34 11.0 5.5 0.16 12.1 1.6 2.5 2 0 0 2 2 2 0 YrhC-like protein Radical_SAM PF04055.21 gi|347524375|ref|YP_004781945.1| - 9.8e-15 55.3 0.0 5.7e-14 52.8 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|347524375|ref|YP_004781945.1| - 0.00057 20.2 0.0 0.00091 19.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|347524375|ref|YP_004781945.1| - 0.00079 19.6 0.0 0.0013 18.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PAC2 PF09754.9 gi|347524376|ref|YP_004781946.1| - 8.8e-40 137.0 0.2 1e-39 136.8 0.2 1.0 1 0 0 1 1 1 1 PAC2 family UDPG_MGDP_dh PF00984.19 gi|347524377|ref|YP_004781947.1| - 1.8e-08 34.4 0.0 3.3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain 2-Hacid_dh_C PF02826.19 gi|347524377|ref|YP_004781947.1| - 0.0092 15.4 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|347524377|ref|YP_004781947.1| - 0.014 15.0 0.0 2.8 7.5 0.0 2.3 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_trans_4_4 PF13579.6 gi|347524377|ref|YP_004781947.1| - 0.088 13.2 5.2 0.1 13.0 4.6 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain PaREP1 PF05942.11 gi|347524379|ref|YP_004781949.1| - 4.1e-28 97.6 0.3 6.8e-28 96.9 0.3 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PmbA_TldD PF01523.16 gi|347524380|ref|YP_004781950.1| - 3.9e-54 184.4 0.2 6.2e-54 183.7 0.2 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase CoA_trans PF01144.23 gi|347524380|ref|YP_004781950.1| - 0.012 15.0 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Coenzyme A transferase ABC2_membrane_4 PF12730.7 gi|347524381|ref|YP_004781951.1| - 0.00029 20.8 7.3 0.00029 20.8 7.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|347524381|ref|YP_004781951.1| - 0.042 12.9 15.3 0.062 12.4 15.3 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein S_4TM PF18159.1 gi|347524381|ref|YP_004781951.1| - 4 6.6 7.1 1.8 7.8 1.4 2.2 2 1 0 2 2 2 0 SMODS-associating 4TM effector domain ABC_tran PF00005.27 gi|347524382|ref|YP_004781952.1| - 2.2e-27 96.3 0.0 2.7e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347524382|ref|YP_004781952.1| - 1.5e-11 44.7 1.2 8.5e-05 22.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|347524382|ref|YP_004781952.1| - 0.00055 20.4 1.0 0.0013 19.1 1.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|347524382|ref|YP_004781952.1| - 0.0007 19.3 0.1 0.0012 18.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.8 gi|347524382|ref|YP_004781952.1| - 0.0026 15.4 0.7 0.0032 15.1 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) SbcCD_C PF13558.6 gi|347524382|ref|YP_004781952.1| - 0.0034 17.6 0.0 0.0083 16.3 0.0 1.7 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|347524382|ref|YP_004781952.1| - 0.0049 16.6 0.1 0.016 14.9 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|347524382|ref|YP_004781952.1| - 0.01 16.4 0.1 0.015 15.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|347524382|ref|YP_004781952.1| - 0.013 15.5 0.3 0.035 14.0 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AFG1_ATPase PF03969.16 gi|347524382|ref|YP_004781952.1| - 0.019 13.9 0.1 0.2 10.5 0.0 1.9 2 0 0 2 2 2 0 AFG1-like ATPase AAA_13 PF13166.6 gi|347524382|ref|YP_004781952.1| - 0.024 13.3 0.0 0.038 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|347524382|ref|YP_004781952.1| - 0.04 13.3 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family DLIC PF05783.11 gi|347524382|ref|YP_004781952.1| - 0.058 12.2 0.0 0.077 11.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.6 gi|347524382|ref|YP_004781952.1| - 0.06 13.5 0.1 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|347524382|ref|YP_004781952.1| - 0.09 12.8 0.8 0.86 9.6 0.4 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|347524382|ref|YP_004781952.1| - 0.11 11.6 0.1 0.15 11.1 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|347524382|ref|YP_004781952.1| - 0.18 12.3 0.2 0.78 10.2 0.1 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|347524382|ref|YP_004781952.1| - 0.24 10.5 0.1 0.37 9.9 0.1 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_15 PF13175.6 gi|347524382|ref|YP_004781952.1| - 0.26 10.9 0.0 0.45 10.2 0.0 1.3 2 0 0 2 2 2 0 AAA ATPase domain Cytochrom_C_asm PF01578.20 gi|347524384|ref|YP_004781954.1| - 1.7e-22 80.3 7.7 1.7e-22 80.3 7.7 2.1 2 0 0 2 2 2 1 Cytochrome C assembly protein VanZ PF04892.12 gi|347524384|ref|YP_004781954.1| - 0.66 10.6 3.6 0.38 11.4 0.7 1.9 2 0 0 2 2 2 0 VanZ like family TrbC PF04956.13 gi|347524384|ref|YP_004781954.1| - 0.78 10.0 19.1 1.3 9.3 4.0 4.1 3 1 1 4 4 4 0 TrbC/VIRB2 family PmbA_TldD PF01523.16 gi|347524386|ref|YP_004781956.1| - 3e-63 214.3 0.4 4.1e-63 213.8 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase MR_MLE_C PF13378.6 gi|347524387|ref|YP_004781957.1| - 9.9e-47 159.3 0.5 1.3e-46 159.0 0.5 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|347524387|ref|YP_004781957.1| - 8.8e-10 38.8 0.0 2.5e-09 37.4 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ThiG PF05690.14 gi|347524387|ref|YP_004781957.1| - 0.017 14.4 0.3 0.035 13.4 0.1 1.5 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DUF1611 PF07755.11 gi|347524388|ref|YP_004781958.1| - 3.5e-57 192.9 0.0 4.7e-57 192.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|347524388|ref|YP_004781958.1| - 2.3e-30 104.7 0.0 1.2e-29 102.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain DapB_N PF01113.20 gi|347524388|ref|YP_004781958.1| - 0.0041 17.2 0.0 0.0093 16.1 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RHH_1 PF01402.21 gi|347524389|ref|YP_004781959.1| - 3.5e-05 23.6 0.2 0.00038 20.3 0.0 2.6 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|347524389|ref|YP_004781959.1| - 0.013 15.3 0.1 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 SeqA_N PF17206.3 gi|347524389|ref|YP_004781959.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 SeqA protein N-terminal domain tRNA-synt_1 PF00133.22 gi|347524390|ref|YP_004781960.1| - 1.5e-109 366.9 0.0 2.2e-108 363.1 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|347524390|ref|YP_004781960.1| - 4.2e-31 108.0 0.0 8.9e-31 106.9 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|347524390|ref|YP_004781960.1| - 7.1e-28 97.4 0.0 3e-12 46.0 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|347524390|ref|YP_004781960.1| - 3e-05 23.6 0.0 0.0017 17.9 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.7 gi|347524390|ref|YP_004781960.1| - 0.0012 18.9 2.3 0.096 12.7 0.3 3.1 3 0 0 3 3 3 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|347524390|ref|YP_004781960.1| - 0.015 14.6 2.9 5.8 6.3 0.1 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger HypA PF01155.19 gi|347524390|ref|YP_004781960.1| - 0.041 13.9 0.4 2.2 8.3 0.1 3.0 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA tRNA-synt_1e PF01406.19 gi|347524390|ref|YP_004781960.1| - 0.053 12.9 0.0 5.5 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain zf-IS66 PF13005.7 gi|347524390|ref|YP_004781960.1| - 0.24 11.8 3.6 25 5.4 0.2 3.7 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 HscB_4_cys PF18256.1 gi|347524390|ref|YP_004781960.1| - 4.2 7.3 8.2 34 4.4 0.0 3.8 4 0 0 4 4 4 0 Co-chaperone HscB tetracysteine metal binding motif zinc_ribbon_2 PF13240.6 gi|347524390|ref|YP_004781960.1| - 8.1 6.3 14.0 5.7 6.8 1.0 3.6 4 0 0 4 4 4 0 zinc-ribbon domain PIN PF01850.21 gi|347524391|ref|YP_004781961.1| - 2.1e-11 44.4 0.0 3e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 PIN domain UBA_3 PF09288.10 gi|347524391|ref|YP_004781961.1| - 0.036 13.9 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain MazE_antitoxin PF04014.18 gi|347524392|ref|YP_004781962.1| - 3.9e-11 42.6 0.4 5.8e-11 42.1 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF104 PF01954.16 gi|347524392|ref|YP_004781962.1| - 0.049 14.1 1.2 0.085 13.3 1.2 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF104 Molydop_binding PF01568.21 gi|347524392|ref|YP_004781962.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 1 0 1 1 1 0 Molydopterin dinucleotide binding domain Rho_RNA_bind PF07497.12 gi|347524392|ref|YP_004781962.1| - 0.12 12.2 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain VAPB_antitox PF02697.14 gi|347524393|ref|YP_004781963.1| - 0.0026 18.5 0.4 0.0032 18.2 0.4 1.1 1 0 0 1 1 1 1 Putative antitoxin GyrB_insert PF18053.1 gi|347524393|ref|YP_004781963.1| - 0.012 15.6 0.1 0.013 15.4 0.1 1.1 1 0 0 1 1 1 0 DNA gyrase B subunit insert domain RHH_1 PF01402.21 gi|347524393|ref|YP_004781963.1| - 0.012 15.5 0.5 0.021 14.8 0.5 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family L27_1 PF09058.10 gi|347524393|ref|YP_004781963.1| - 0.045 13.7 0.2 0.065 13.2 0.2 1.3 1 0 0 1 1 1 0 L27_1 AAA_lid_6 PF17866.1 gi|347524393|ref|YP_004781963.1| - 0.054 13.7 0.5 0.07 13.3 0.5 1.3 1 0 0 1 1 1 0 AAA lid domain PIN PF01850.21 gi|347524394|ref|YP_004781964.1| - 2.6e-15 57.0 2.4 6.3e-15 55.8 2.4 1.5 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|347524394|ref|YP_004781964.1| - 0.00073 20.1 0.0 0.0081 16.7 0.0 1.9 1 1 1 2 2 2 1 PIN domain DUF4411 PF14367.6 gi|347524394|ref|YP_004781964.1| - 0.0052 16.7 0.1 0.0078 16.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4411) PIN_2 PF10130.9 gi|347524394|ref|YP_004781964.1| - 0.076 13.3 0.2 0.092 13.0 0.2 1.2 1 0 0 1 1 1 0 PIN domain PIN_6 PF17146.4 gi|347524394|ref|YP_004781964.1| - 0.087 13.3 0.2 0.19 12.3 0.2 1.7 1 1 0 1 1 1 0 PIN domain of ribonuclease PaREP1 PF05942.11 gi|347524395|ref|YP_004781965.1| - 1.6e-23 82.8 1.4 1.7e-23 82.8 0.1 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Gcn1_N PF12074.8 gi|347524395|ref|YP_004781965.1| - 0.035 13.4 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Generalcontrol nonderepressible 1 (Gcn1) N-terminal HBM PF16591.5 gi|347524395|ref|YP_004781965.1| - 0.093 12.1 0.1 0.17 11.3 0.0 1.4 2 0 0 2 2 2 0 Helical bimodular sensor domain PaREP1 PF05942.11 gi|347524396|ref|YP_004781966.1| - 7e-26 90.4 0.0 1.2e-25 89.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Radical_SAM PF04055.21 gi|347524397|ref|YP_004781967.1| - 1.2e-18 68.1 0.0 5.2e-16 59.5 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily zf-ribbon_3 PF13248.6 gi|347524397|ref|YP_004781967.1| - 0.00032 20.0 5.4 0.46 10.0 0.1 3.6 3 0 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347524397|ref|YP_004781967.1| - 0.004 17.0 1.0 0.004 17.0 1.0 2.7 2 1 0 2 2 2 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|347524397|ref|YP_004781967.1| - 0.007 15.9 4.1 1.8 8.2 0.1 3.1 3 0 0 3 3 3 2 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|347524397|ref|YP_004781967.1| - 0.017 15.1 2.4 2.7 8.0 0.1 3.3 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|347524397|ref|YP_004781967.1| - 0.02 14.6 4.3 0.85 9.4 0.1 3.4 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|347524397|ref|YP_004781967.1| - 0.031 14.3 0.0 0.031 14.3 0.0 3.0 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|347524397|ref|YP_004781967.1| - 0.036 14.0 1.0 0.036 14.0 1.0 3.5 3 1 0 3 3 3 0 zinc-ribbon domain DUF35_N PF12172.8 gi|347524397|ref|YP_004781967.1| - 0.044 13.7 6.9 0.066 13.1 0.2 3.0 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|347524397|ref|YP_004781967.1| - 0.063 13.0 5.0 5 7.0 0.0 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Terminase_GpA PF05876.12 gi|347524397|ref|YP_004781967.1| - 0.065 11.8 0.1 0.096 11.2 0.1 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-ACC PF17848.1 gi|347524397|ref|YP_004781967.1| - 0.083 13.0 3.7 7.5 6.7 0.1 3.0 3 0 0 3 3 2 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|347524397|ref|YP_004781967.1| - 0.1 13.3 0.9 0.1 13.3 0.9 3.3 3 1 1 4 4 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.16 gi|347524397|ref|YP_004781967.1| - 0.28 11.1 0.1 0.28 11.1 0.1 3.5 4 0 0 4 4 3 0 HIT zinc finger CpXC PF14353.6 gi|347524397|ref|YP_004781967.1| - 0.29 11.2 0.9 11 6.1 0.0 2.9 4 0 0 4 4 3 0 CpXC protein zf-C2HC5 PF06221.13 gi|347524397|ref|YP_004781967.1| - 0.3 11.1 3.4 4 7.5 0.4 3.3 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type zf_UBZ PF18439.1 gi|347524397|ref|YP_004781967.1| - 0.48 10.1 0.1 0.48 10.1 0.1 3.8 5 0 0 5 5 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_5 PF13719.6 gi|347524397|ref|YP_004781967.1| - 1.7 8.4 6.2 2.3 8.1 1.2 3.0 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|347524397|ref|YP_004781967.1| - 3.3 7.9 10.0 3 8.1 0.1 3.4 4 0 0 4 4 3 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|347524397|ref|YP_004781967.1| - 3.5 7.1 9.0 7.5 6.1 0.2 3.1 3 0 0 3 3 3 0 Mu-like prophage protein Com Desulfoferrod_N PF06397.12 gi|347524397|ref|YP_004781967.1| - 3.5 7.3 7.1 3.8 7.2 0.1 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf_C2H2_10 PF18414.1 gi|347524397|ref|YP_004781967.1| - 4.5 6.9 9.2 3.5 7.3 0.1 3.3 3 0 0 3 3 3 0 C2H2 type zinc-finger DUF1610 PF07754.11 gi|347524397|ref|YP_004781967.1| - 9.4 6.3 12.5 4.2 7.4 0.2 3.9 4 0 0 4 4 3 0 Domain of unknown function (DUF1610) Pilin_N PF07790.11 gi|347524398|ref|YP_004781968.1| - 0.00017 22.5 0.8 0.00029 21.7 0.8 1.6 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Gemini_mov PF01708.16 gi|347524398|ref|YP_004781968.1| - 0.033 14.0 1.4 0.066 13.0 1.4 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein PSI_PsaJ PF01701.18 gi|347524398|ref|YP_004781968.1| - 7.4 7.2 6.7 25 5.5 0.2 2.3 1 1 1 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ MMR_HSR1_C PF08438.10 gi|347524399|ref|YP_004781969.1| - 7.4e-39 132.8 0.1 1.2e-38 132.1 0.1 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|347524399|ref|YP_004781969.1| - 3.2e-20 72.3 0.0 3.3e-19 69.0 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|347524399|ref|YP_004781969.1| - 8.2e-13 48.2 0.0 1.7e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|347524399|ref|YP_004781969.1| - 1.7e-05 24.4 0.9 4.7e-05 23.0 0.1 2.2 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|347524399|ref|YP_004781969.1| - 0.0026 17.3 0.6 6.4 6.3 0.0 3.7 4 0 0 4 4 4 1 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 gi|347524399|ref|YP_004781969.1| - 0.0053 16.9 0.0 0.021 15.0 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF933) Lip_prot_lig_C PF10437.9 gi|347524399|ref|YP_004781969.1| - 0.13 12.3 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus LexA_DNA_bind PF01726.16 gi|347524399|ref|YP_004781969.1| - 0.17 11.7 0.1 15 5.5 0.0 2.5 2 0 0 2 2 2 0 LexA DNA binding domain DUF3800 PF12686.7 gi|347524400|ref|YP_004781970.1| - 0.00013 22.5 0.0 0.00022 21.8 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) DUF429 PF04250.13 gi|347524401|ref|YP_004781971.1| - 2.7e-05 24.1 2.5 8.8e-05 22.4 0.1 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF429) RuvC PF02075.17 gi|347524401|ref|YP_004781971.1| - 0.11 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Crossover junction endodeoxyribonuclease RuvC DHHA1 PF02272.19 gi|347524402|ref|YP_004781972.1| - 2.8e-07 31.0 0.1 1e-05 26.0 0.1 2.5 2 1 0 2 2 2 1 DHHA1 domain CoA_binding_2 PF13380.6 gi|347524402|ref|YP_004781972.1| - 0.0052 17.3 0.0 0.018 15.5 0.0 1.8 2 0 0 2 2 2 1 CoA binding domain DHH PF01368.20 gi|347524402|ref|YP_004781972.1| - 0.033 14.4 0.0 0.061 13.6 0.0 1.5 1 0 0 1 1 1 0 DHH family TrkH PF02386.16 gi|347524403|ref|YP_004781973.1| - 3.3e-45 154.5 18.5 1.6e-43 148.9 18.5 2.6 1 1 0 1 1 1 1 Cation transport protein TrbC PF04956.13 gi|347524403|ref|YP_004781973.1| - 5 7.4 15.4 0.32 11.2 0.4 4.3 4 0 0 4 4 4 0 TrbC/VIRB2 family AIRS PF00586.24 gi|347524404|ref|YP_004781974.1| - 2.4e-14 53.7 0.6 4.8e-14 52.8 0.6 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain MazE_antitoxin PF04014.18 gi|347524405|ref|YP_004781975.1| - 1.2e-10 41.0 0.3 2e-10 40.3 0.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin EF1_GNE PF00736.19 gi|347524405|ref|YP_004781975.1| - 0.016 15.4 0.1 0.054 13.7 0.0 2.1 2 0 0 2 2 2 0 EF-1 guanine nucleotide exchange domain ABC2_membrane_3 PF12698.7 gi|347524406|ref|YP_004781976.1| - 1.5e-13 50.6 11.9 2.1e-13 50.1 11.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|347524406|ref|YP_004781976.1| - 4.5e-11 42.6 26.3 7.3e-11 41.9 26.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|347524406|ref|YP_004781976.1| - 6.2e-07 29.1 12.2 1.2e-06 28.1 12.2 1.5 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|347524406|ref|YP_004781976.1| - 0.042 13.4 8.3 0.077 12.5 8.0 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|347524406|ref|YP_004781976.1| - 0.28 11.1 14.9 0.056 13.4 10.6 2.0 2 1 0 2 2 2 0 ABC-2 family transporter protein 7TMR-DISM_7TM PF07695.11 gi|347524406|ref|YP_004781976.1| - 2.5 8.0 19.6 0.022 14.7 11.1 1.9 3 0 0 3 3 3 0 7TM diverse intracellular signalling ABC_tran PF00005.27 gi|347524407|ref|YP_004781977.1| - 6.3e-22 78.6 0.0 8.3e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347524407|ref|YP_004781977.1| - 4.5e-16 59.5 0.2 5.9e-08 32.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|347524407|ref|YP_004781977.1| - 2.6e-05 24.1 0.3 0.00022 21.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|347524407|ref|YP_004781977.1| - 3.8e-05 24.3 0.0 5.5e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|347524407|ref|YP_004781977.1| - 0.00018 21.2 0.3 0.00034 20.2 0.3 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|347524407|ref|YP_004781977.1| - 0.00051 19.8 0.1 0.4 10.4 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein SMC_N PF02463.19 gi|347524407|ref|YP_004781977.1| - 0.001 18.6 0.0 0.035 13.5 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|347524407|ref|YP_004781977.1| - 0.0014 17.4 0.0 0.22 10.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|347524407|ref|YP_004781977.1| - 0.0015 18.2 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|347524407|ref|YP_004781977.1| - 0.0017 18.1 0.1 0.0028 17.3 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|347524407|ref|YP_004781977.1| - 0.0019 18.6 0.4 0.0049 17.3 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain DLIC PF05783.11 gi|347524407|ref|YP_004781977.1| - 0.0024 16.8 0.0 0.0033 16.3 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_29 PF13555.6 gi|347524407|ref|YP_004781977.1| - 0.0041 16.8 0.0 0.0072 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain CbiA PF01656.23 gi|347524407|ref|YP_004781977.1| - 0.0042 17.1 0.0 0.0051 16.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|347524407|ref|YP_004781977.1| - 0.005 16.4 0.2 0.01 15.4 0.1 1.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|347524407|ref|YP_004781977.1| - 0.0066 16.7 0.4 0.033 14.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|347524407|ref|YP_004781977.1| - 0.0071 16.1 0.0 0.1 12.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|347524407|ref|YP_004781977.1| - 0.01 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|347524407|ref|YP_004781977.1| - 0.012 15.9 0.0 0.026 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|347524407|ref|YP_004781977.1| - 0.012 15.8 0.1 0.028 14.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|347524407|ref|YP_004781977.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC_ATPase PF09818.9 gi|347524407|ref|YP_004781977.1| - 0.029 13.2 0.1 0.056 12.2 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_24 PF13479.6 gi|347524407|ref|YP_004781977.1| - 0.044 13.5 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|347524407|ref|YP_004781977.1| - 0.047 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|347524407|ref|YP_004781977.1| - 0.053 13.9 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|347524407|ref|YP_004781977.1| - 0.066 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|347524407|ref|YP_004781977.1| - 0.11 13.0 0.1 1 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|347524407|ref|YP_004781977.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF3584 PF12128.8 gi|347524407|ref|YP_004781977.1| - 0.2 9.1 0.1 0.27 8.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rad17 PF03215.15 gi|347524407|ref|YP_004781977.1| - 0.28 11.1 0.0 0.44 10.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain MJ1316 PF04457.12 gi|347524408|ref|YP_004781978.1| - 8.4e-08 32.8 0.4 1e-07 32.6 0.4 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Proton_antipo_M PF00361.20 gi|347524409|ref|YP_004781979.1| - 5.5e-42 144.0 25.8 1.4e-41 142.7 25.8 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|347524410|ref|YP_004781980.1| - 6.8e-56 189.6 41.2 5.6e-52 176.8 31.0 2.8 3 0 0 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|347524410|ref|YP_004781980.1| - 6.2e-06 26.2 3.3 6.2e-06 26.2 3.3 3.0 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TMEM70 PF06979.12 gi|347524410|ref|YP_004781980.1| - 0.047 14.1 0.5 0.18 12.2 0.5 2.1 1 0 0 1 1 1 0 Assembly, mitochondrial proton-transport ATP synth complex PdxA PF04166.12 gi|347524410|ref|YP_004781980.1| - 0.082 12.3 1.8 0.079 12.4 0.4 1.5 1 1 1 2 2 2 0 Pyridoxal phosphate biosynthetic protein PdxA Proton_antipo_M PF00361.20 gi|347524411|ref|YP_004781981.1| - 2.9e-59 200.7 26.8 2.9e-59 200.7 26.8 1.6 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|347524411|ref|YP_004781981.1| - 0.0015 18.5 2.4 0.0095 16.0 1.0 3.1 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus S_4TM PF18159.1 gi|347524411|ref|YP_004781981.1| - 2.6 7.3 4.2 12 5.1 4.2 2.1 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain Oxidored_q2 PF00420.24 gi|347524412|ref|YP_004781982.1| - 1.8e-11 43.6 11.2 2.3e-11 43.3 11.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Tmemb_170 PF10190.9 gi|347524412|ref|YP_004781982.1| - 1.4 9.3 11.1 0.74 10.2 3.1 2.0 1 1 1 2 2 2 0 Putative transmembrane protein 170 Oxidored_q3 PF00499.20 gi|347524413|ref|YP_004781983.1| - 4.5e-20 71.8 12.9 6.9e-20 71.2 12.9 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2070 PF09843.9 gi|347524413|ref|YP_004781983.1| - 0.53 8.5 13.9 0.64 8.2 13.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Fer4 PF00037.27 gi|347524414|ref|YP_004781984.1| - 3.3e-13 48.8 13.2 9e-08 31.6 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|347524414|ref|YP_004781984.1| - 1.2e-09 38.6 5.6 5.1e-09 36.6 6.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|347524414|ref|YP_004781984.1| - 6.9e-09 35.7 15.7 6.5e-07 29.4 8.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|347524414|ref|YP_004781984.1| - 9.1e-09 35.3 3.7 7.1e-05 22.9 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|347524414|ref|YP_004781984.1| - 1.4e-08 34.8 4.3 2.4e-08 34.0 4.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|347524414|ref|YP_004781984.1| - 3.5e-08 34.2 3.5 0.0043 17.9 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|347524414|ref|YP_004781984.1| - 3.8e-07 29.9 11.5 0.00064 19.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|347524414|ref|YP_004781984.1| - 3.8e-06 26.7 13.1 0.0013 18.7 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|347524414|ref|YP_004781984.1| - 8e-06 26.2 2.3 0.038 14.4 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|347524414|ref|YP_004781984.1| - 9.2e-06 25.8 7.9 0.0051 17.2 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|347524414|ref|YP_004781984.1| - 2.2e-05 24.9 2.2 0.094 13.3 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|347524414|ref|YP_004781984.1| - 8.1e-05 23.3 15.9 0.03 15.2 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|347524414|ref|YP_004781984.1| - 0.00055 20.6 5.4 0.024 15.4 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|347524414|ref|YP_004781984.1| - 0.036 14.9 6.1 1.6 9.6 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|347524414|ref|YP_004781984.1| - 0.083 13.4 11.3 0.43 11.2 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|347524414|ref|YP_004781984.1| - 0.68 10.1 10.2 1.7 8.9 1.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain GTP_EFTU_D4 PF14578.6 gi|347524417|ref|YP_004781987.1| - 2e-40 136.5 3.0 8.3e-40 134.6 3.0 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|347524417|ref|YP_004781987.1| - 1.1e-32 113.2 0.0 9.1e-25 87.3 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|347524417|ref|YP_004781987.1| - 2.8e-24 85.2 2.1 5.5e-24 84.3 2.1 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|347524417|ref|YP_004781987.1| - 1.5e-09 38.1 0.8 1.5e-09 38.1 0.8 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|347524417|ref|YP_004781987.1| - 5e-06 26.6 0.0 2.3e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|347524417|ref|YP_004781987.1| - 0.015 15.3 0.1 0.13 12.4 0.0 2.4 2 0 0 2 2 2 0 Dynamin family Roc PF08477.13 gi|347524417|ref|YP_004781987.1| - 0.021 15.0 0.0 0.068 13.4 0.0 1.9 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|347524417|ref|YP_004781987.1| - 0.034 13.6 0.0 12 5.3 0.0 3.3 4 0 0 4 4 4 0 ADP-ribosylation factor family MobB PF03205.14 gi|347524417|ref|YP_004781987.1| - 0.26 11.2 2.2 18 5.2 0.0 3.2 4 0 0 4 4 4 0 Molybdopterin guanine dinucleotide synthesis protein B Mem_trans PF03547.18 gi|347524418|ref|YP_004781988.1| - 0.0001 20.8 5.3 0.0001 20.8 5.3 2.7 1 1 0 2 2 2 2 Membrane transport protein GHMP_kinases_C PF08544.13 gi|347524419|ref|YP_004781989.1| - 6.1e-05 23.3 0.2 0.00014 22.1 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|347524419|ref|YP_004781989.1| - 0.0018 18.4 1.8 0.006 16.8 1.8 1.9 1 0 0 1 1 1 1 GHMP kinases N terminal domain RHH_1 PF01402.21 gi|347524420|ref|YP_004781990.1| - 1.1e-10 41.0 2.5 2e-10 40.2 2.5 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|347524420|ref|YP_004781990.1| - 0.00018 21.4 1.5 0.00024 21.0 1.5 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain VapB_antitoxin PF09957.9 gi|347524420|ref|YP_004781990.1| - 0.034 14.1 1.5 0.052 13.5 1.5 1.4 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Aconitase PF00330.20 gi|347524421|ref|YP_004781991.1| - 1.2e-95 321.2 0.0 1.7e-93 314.1 0.0 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|347524421|ref|YP_004781991.1| - 0.00016 20.6 0.0 0.00027 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Ribosomal_L35Ae PF01247.18 gi|347524423|ref|YP_004781993.1| - 7.2e-14 51.7 0.1 1.3e-13 50.9 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L35Ae RimM PF01782.18 gi|347524423|ref|YP_004781993.1| - 0.021 15.1 0.3 1.8 8.9 0.0 2.2 2 0 0 2 2 2 0 RimM N-terminal domain SpoU_methylase PF00588.19 gi|347524425|ref|YP_004781995.1| - 2.1e-11 44.2 0.0 2.1e-09 37.7 0.0 2.0 1 1 0 1 1 1 1 SpoU rRNA Methylase family DUF4730 PF15873.5 gi|347524425|ref|YP_004781995.1| - 0.0046 17.2 0.0 0.0082 16.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4730) PHP_C PF13263.6 gi|347524426|ref|YP_004781996.1| - 1.5e-14 53.5 0.0 3e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|347524426|ref|YP_004781996.1| - 5.7e-10 39.8 0.0 1.8e-09 38.1 0.0 2.0 1 1 0 1 1 1 1 PHP domain NTP_transf_2 PF01909.23 gi|347524427|ref|YP_004781997.1| - 8.6e-09 35.6 0.0 1.8e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|347524427|ref|YP_004781997.1| - 0.00038 20.5 0.0 0.00078 19.5 0.0 1.5 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_24 PF13412.6 gi|347524427|ref|YP_004781997.1| - 0.0073 15.8 0.3 0.12 11.9 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|347524427|ref|YP_004781997.1| - 0.011 15.6 5.2 0.27 11.1 0.2 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Kinesin_assoc PF16183.5 gi|347524427|ref|YP_004781997.1| - 0.058 13.5 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Kinesin-associated TBP-binding PF09247.11 gi|347524427|ref|YP_004781997.1| - 0.12 12.6 0.0 1.2 9.4 0.0 2.1 2 0 0 2 2 2 0 TATA box-binding protein binding Radical_SAM PF04055.21 gi|347524428|ref|YP_004781998.1| - 2.1e-12 47.8 1.4 3.4e-10 40.6 1.0 2.6 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|347524428|ref|YP_004781998.1| - 2.4e-08 34.1 0.0 4.6e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|347524428|ref|YP_004781998.1| - 4.8e-05 23.7 0.0 8.7e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF763 PF05559.11 gi|347524430|ref|YP_004782000.1| - 1.6e-117 392.2 0.0 1.9e-117 392.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) HHH PF00633.23 gi|347524430|ref|YP_004782000.1| - 0.0024 17.6 0.1 0.0061 16.4 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HRDC PF00570.23 gi|347524430|ref|YP_004782000.1| - 0.043 13.8 0.3 1.4 9.0 0.0 2.9 3 0 0 3 3 3 0 HRDC domain TPR_14 PF13428.6 gi|347524430|ref|YP_004782000.1| - 0.96 10.4 6.2 71 4.6 0.1 4.2 3 1 0 3 3 3 0 Tetratricopeptide repeat HTH_32 PF13565.6 gi|347524430|ref|YP_004782000.1| - 4.7 7.9 6.9 1.9 9.2 0.6 3.2 3 0 0 3 3 3 0 Homeodomain-like domain GATase_4 PF13230.6 gi|347524431|ref|YP_004782001.1| - 5.2e-06 25.5 0.0 8.6e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|347524431|ref|YP_004782001.1| - 9.6e-06 25.8 0.0 1.7e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain ABC_tran PF00005.27 gi|347524432|ref|YP_004782002.1| - 7.6e-25 88.0 0.0 1.2e-24 87.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|347524432|ref|YP_004782002.1| - 8.2e-12 45.5 1.7 3.7e-07 30.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|347524432|ref|YP_004782002.1| - 0.00095 18.7 0.0 0.4 10.1 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|347524432|ref|YP_004782002.1| - 0.0013 19.4 0.0 0.0028 18.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|347524432|ref|YP_004782002.1| - 0.0017 18.8 0.1 0.0028 18.0 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|347524432|ref|YP_004782002.1| - 0.013 16.0 0.1 0.023 15.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|347524432|ref|YP_004782002.1| - 0.021 14.5 0.0 0.051 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|347524432|ref|YP_004782002.1| - 0.026 14.8 0.0 0.093 13.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|347524432|ref|YP_004782002.1| - 0.029 14.0 0.0 0.061 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|347524432|ref|YP_004782002.1| - 0.045 14.2 0.2 0.31 11.5 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|347524432|ref|YP_004782002.1| - 0.067 12.8 0.2 0.11 12.2 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|347524432|ref|YP_004782002.1| - 0.07 12.9 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|347524432|ref|YP_004782002.1| - 0.15 12.1 0.0 17 5.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|347524432|ref|YP_004782002.1| - 0.15 11.7 0.2 0.71 9.6 0.1 2.1 3 0 0 3 3 3 0 AAA domain TrwB_AAD_bind PF10412.9 gi|347524432|ref|YP_004782002.1| - 0.17 10.8 0.1 0.3 9.9 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_15 PF13175.6 gi|347524432|ref|YP_004782002.1| - 0.18 11.5 0.0 0.47 10.1 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|347524432|ref|YP_004782002.1| - 0.51 10.9 2.4 40 4.8 2.4 3.1 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|347524433|ref|YP_004782003.1| - 1.1e-09 38.0 19.6 1.8e-09 37.3 19.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|347524433|ref|YP_004782003.1| - 1.9e-05 24.7 10.3 1.9e-05 24.7 10.3 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|347524433|ref|YP_004782003.1| - 0.00034 20.2 3.5 0.00034 20.2 3.5 2.5 3 1 0 3 3 3 1 ABC-2 family transporter protein Zip PF02535.22 gi|347524433|ref|YP_004782003.1| - 0.018 14.3 2.2 0.037 13.2 2.2 1.5 1 0 0 1 1 1 0 ZIP Zinc transporter AA_permease_2 PF13520.6 gi|347524434|ref|YP_004782004.1| - 1.4e-30 106.5 37.6 2.3e-30 105.8 37.6 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|347524434|ref|YP_004782004.1| - 7.5e-23 80.9 35.6 7.5e-23 80.9 35.6 1.5 1 1 1 2 2 2 1 Amino acid permease NTP_transf_2 PF01909.23 gi|347524434|ref|YP_004782004.1| - 2.1e-12 47.1 0.1 3.6e-10 40.0 0.0 2.5 2 0 0 2 2 2 1 Nucleotidyltransferase domain Spore_permease PF03845.13 gi|347524434|ref|YP_004782004.1| - 9.2e-08 31.3 10.0 1.5e-07 30.5 10.0 1.3 1 0 0 1 1 1 1 Spore germination protein Polbeta PF18765.1 gi|347524434|ref|YP_004782004.1| - 1.5e-05 25.0 0.0 0.0006 19.9 0.0 2.3 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase LysR_substrate PF03466.20 gi|347524434|ref|YP_004782004.1| - 0.022 14.1 1.1 0.043 13.2 1.1 1.4 1 0 0 1 1 1 0 LysR substrate binding domain Iso_dh PF00180.20 gi|347524435|ref|YP_004782005.1| - 9.2e-92 307.9 0.0 1.2e-91 307.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|347524435|ref|YP_004782005.1| - 0.0095 15.4 0.1 0.017 14.5 0.1 1.4 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Glutaredoxin PF00462.24 gi|347524435|ref|YP_004782005.1| - 0.16 12.2 0.5 1.1 9.6 0.1 2.3 2 0 0 2 2 2 0 Glutaredoxin eIF-5_eIF-2B PF01873.17 gi|347524436|ref|YP_004782006.1| - 3.9e-36 123.5 0.0 5.3e-36 123.0 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zf-NADH-PPase PF09297.11 gi|347524436|ref|YP_004782006.1| - 0.0061 16.2 2.5 0.023 14.3 2.5 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|347524436|ref|YP_004782006.1| - 0.011 16.1 0.5 0.017 15.5 0.5 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|347524436|ref|YP_004782006.1| - 0.02 15.1 0.2 0.37 11.0 0.0 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|347524436|ref|YP_004782006.1| - 0.037 13.4 1.5 0.47 9.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|347524436|ref|YP_004782006.1| - 0.041 13.4 0.5 0.084 12.4 0.5 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|347524436|ref|YP_004782006.1| - 0.064 13.2 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|347524436|ref|YP_004782006.1| - 0.095 12.7 1.2 10 6.2 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|347524436|ref|YP_004782006.1| - 0.12 12.5 0.2 3.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DpnI PF06044.12 gi|347524436|ref|YP_004782006.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Dam-replacing family zinc_ribbon_2 PF13240.6 gi|347524436|ref|YP_004782006.1| - 0.18 11.5 1.0 11 5.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|347524436|ref|YP_004782006.1| - 0.47 10.7 2.7 2.8 8.2 0.3 2.6 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.6 gi|347524436|ref|YP_004782006.1| - 0.5 10.3 5.0 0.9 9.5 0.9 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.6 gi|347524436|ref|YP_004782006.1| - 0.98 9.4 3.7 0.93 9.5 2.0 1.9 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.8 gi|347524436|ref|YP_004782006.1| - 1.2 9.1 4.8 13 5.8 0.1 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_13 PF18508.1 gi|347524436|ref|YP_004782006.1| - 3 7.5 4.4 11 5.7 0.3 2.5 1 1 1 2 2 2 0 Zinc finger domain PCNA_C PF02747.15 gi|347524438|ref|YP_004782008.1| - 6.6e-07 29.6 0.0 2e-05 24.8 0.1 2.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|347524438|ref|YP_004782008.1| - 1.1e-06 28.4 0.0 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain NadA PF02445.16 gi|347524439|ref|YP_004782009.1| - 2.8e-90 302.5 0.0 3.2e-90 302.3 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.12 gi|347524439|ref|YP_004782009.1| - 0.052 13.2 2.3 0.42 10.3 0.1 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Glyco_trans_4_4 PF13579.6 gi|347524439|ref|YP_004782009.1| - 2.3 8.7 8.6 7 7.1 0.5 2.9 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain Pertussis_S2S3 PF02918.15 gi|347524441|ref|YP_004782011.1| - 0.028 14.3 0.3 0.03 14.2 0.3 1.1 1 0 0 1 1 1 0 Pertussis toxin, subunit 2 and 3, C-terminal domain COX7a PF02238.15 gi|347524442|ref|YP_004782012.1| - 0.1 13.0 0.0 0.1 13.0 0.0 2.6 2 1 2 4 4 4 0 Cytochrome c oxidase subunit VII MAP17 PF15807.5 gi|347524443|ref|YP_004782013.1| - 0.042 14.1 0.1 0.042 14.1 0.1 1.1 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 DUF364 PF04016.12 gi|347524446|ref|YP_004782016.1| - 1.5e-17 63.5 0.0 2.2e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|347524446|ref|YP_004782016.1| - 0.001 19.3 0.1 0.0024 18.0 0.1 1.7 1 0 0 1 1 1 1 Putative heavy-metal chelation MS_channel PF00924.18 gi|347524447|ref|YP_004782017.1| - 2.4e-55 187.3 0.2 3.3e-55 186.8 0.2 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel Cyt_c_ox_IV PF12270.8 gi|347524447|ref|YP_004782017.1| - 0.76 9.9 5.1 3.9 7.6 3.8 2.2 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV TM_helix PF05552.12 gi|347524447|ref|YP_004782017.1| - 2.5 8.1 9.3 0.068 13.2 1.2 2.7 4 0 0 4 4 4 0 Conserved TM helix Peptidase_M16 PF00675.20 gi|347524448|ref|YP_004782018.1| - 2.4e-27 95.7 0.0 3.8e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|347524448|ref|YP_004782018.1| - 1.5e-06 28.4 0.0 3.7e-06 27.1 0.0 1.6 2 0 0 2 2 2 1 Peptidase M16 inactive domain Pribosyltran PF00156.27 gi|347524449|ref|YP_004782019.1| - 4.3e-16 58.8 0.1 7.4e-16 58.1 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|347524449|ref|YP_004782019.1| - 0.0002 20.9 0.0 0.00029 20.4 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase FYRC PF05965.14 gi|347524449|ref|YP_004782019.1| - 0.069 13.3 0.0 0.14 12.4 0.0 1.5 1 1 0 1 1 1 0 F/Y rich C-terminus Pribosyl_synth PF14572.6 gi|347524449|ref|YP_004782019.1| - 0.083 12.9 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Phage_integrase PF00589.22 gi|347524450|ref|YP_004782020.1| - 1.1e-32 113.2 0.1 2e-32 112.3 0.1 1.5 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|347524450|ref|YP_004782020.1| - 7.7e-12 45.5 0.0 1.3e-08 35.2 0.0 2.7 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|347524450|ref|YP_004782020.1| - 3.9e-10 39.9 1.8 1e-07 32.2 0.8 3.4 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.6 gi|347524450|ref|YP_004782020.1| - 0.0085 16.3 0.0 0.026 14.8 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_6 PF18644.1 gi|347524450|ref|YP_004782020.1| - 0.082 12.9 0.0 0.45 10.5 0.0 2.0 2 0 0 2 2 2 0 Phage integrase SAM-like domain NUFIP1 PF10453.9 gi|347524450|ref|YP_004782020.1| - 0.15 11.9 3.9 0.29 11.0 2.1 2.2 2 0 0 2 2 2 0 Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1) Cas_DxTHG PF09455.10 gi|347524453|ref|YP_004782023.1| - 2.8e-19 69.9 0.0 2.2e-17 63.7 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family MIT PF04212.18 gi|347524453|ref|YP_004782023.1| - 0.052 13.6 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain eRF1_2 PF03464.15 gi|347524454|ref|YP_004782024.1| - 3.5e-45 153.6 0.2 5.4e-45 153.0 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|347524454|ref|YP_004782024.1| - 1.1e-21 77.4 0.7 3.5e-20 72.6 0.1 3.0 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|347524454|ref|YP_004782024.1| - 6.8e-18 65.2 0.1 5.5e-17 62.3 0.0 2.3 2 1 1 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|347524454|ref|YP_004782024.1| - 2.1e-15 57.2 0.1 9.2e-15 55.1 0.2 1.9 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|347524454|ref|YP_004782024.1| - 0.00035 20.6 0.0 0.0006 19.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 LIDHydrolase PF10230.9 gi|347524454|ref|YP_004782024.1| - 0.028 14.0 0.1 8.5 5.8 0.1 2.3 2 1 0 2 2 2 0 Lipid-droplet associated hydrolase RNA_Me_trans PF04252.13 gi|347524455|ref|YP_004782025.1| - 4.7e-51 173.2 0.0 5.4e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Glyco_hydro_114 PF03537.13 gi|347524456|ref|YP_004782026.1| - 9.9e-22 77.4 0.0 1.6e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 Glycoside-hydrolase family GH114 DUF3185 PF11381.8 gi|347524457|ref|YP_004782027.1| - 0.011 15.7 8.7 0.032 14.2 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3185) Nitroreductase PF00881.24 gi|347524458|ref|YP_004782028.1| - 6.3e-25 88.2 0.0 7.7e-25 87.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|347524458|ref|YP_004782028.1| - 0.038 13.5 0.0 0.3 10.6 0.0 2.1 2 0 0 2 2 2 0 Putative TM nitroreductase Cren7 PF11520.8 gi|347524459|ref|YP_004782029.1| - 5.3e-32 109.5 2.0 5.9e-32 109.4 2.0 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF4295 PF14128.6 gi|347524459|ref|YP_004782029.1| - 0.15 11.9 0.6 0.26 11.1 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) Herpes_ICP4_C PF03585.14 gi|347524460|ref|YP_004782030.1| - 0.061 12.0 0.0 0.068 11.9 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus ICP4-like protein C-terminal region Meth_synt_1 PF08267.12 gi|347524461|ref|YP_004782031.1| - 4.8e-16 59.2 0.0 8.3e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|347524461|ref|YP_004782031.1| - 7.9e-08 31.9 0.0 9.9e-08 31.6 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DUF432 PF04254.13 gi|347524463|ref|YP_004782033.1| - 1.3e-26 93.1 0.1 2e-26 92.6 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) NurA PF09376.10 gi|347524464|ref|YP_004782034.1| - 3.2e-15 56.5 0.1 9.7e-15 54.9 0.1 1.7 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|347524465|ref|YP_004782035.1| - 3.2e-32 112.5 0.0 3.4e-31 109.1 0.0 2.2 1 1 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|347524465|ref|YP_004782035.1| - 5.7e-06 26.4 0.7 1.7e-05 24.9 0.0 2.2 3 0 0 3 3 3 1 HAS barrel domain ResIII PF04851.15 gi|347524465|ref|YP_004782035.1| - 1.5e-05 25.1 0.0 9.7e-05 22.4 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF853 PF05872.12 gi|347524465|ref|YP_004782035.1| - 1.9e-05 23.5 0.0 0.074 11.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|347524465|ref|YP_004782035.1| - 2.5e-05 23.4 0.0 0.00018 20.6 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|347524465|ref|YP_004782035.1| - 0.00015 20.7 0.0 0.00028 19.8 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.18 gi|347524465|ref|YP_004782035.1| - 0.00064 19.1 0.1 0.9 8.8 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|347524465|ref|YP_004782035.1| - 0.0014 18.9 0.0 0.23 11.7 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|347524465|ref|YP_004782035.1| - 0.0035 16.3 0.0 0.31 9.9 0.0 2.4 2 1 0 2 2 2 1 AAA-like domain Methyltransf_21 PF05050.12 gi|347524466|ref|YP_004782036.1| - 1.2e-16 61.3 0.0 3.1e-16 59.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|347524466|ref|YP_004782036.1| - 0.00078 18.8 0.0 0.0012 18.2 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_24 PF13578.6 gi|347524466|ref|YP_004782036.1| - 0.089 13.8 0.0 0.42 11.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain DUF1325 PF07039.11 gi|347524466|ref|YP_004782036.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 SGF29 tudor-like domain Met_10 PF02475.16 gi|347524466|ref|YP_004782036.1| - 0.17 11.6 0.0 0.36 10.5 0.0 1.6 1 1 0 1 1 1 0 Met-10+ like-protein Pcc1 PF09341.10 gi|347524468|ref|YP_004782038.1| - 5.9e-07 29.5 0.3 7.2e-07 29.2 0.3 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 HHH_8 PF14716.6 gi|347524470|ref|YP_004782040.1| - 0.13 12.6 2.6 0.32 11.4 0.4 2.2 2 1 0 2 2 2 0 Helix-hairpin-helix domain MoaC PF01967.21 gi|347524471|ref|YP_004782041.1| - 3.7e-53 179.2 1.0 4.6e-53 179.0 1.0 1.0 1 0 0 1 1 1 1 MoaC family HTH_5 PF01022.20 gi|347524472|ref|YP_004782042.1| - 9.7e-06 25.4 0.2 1.7e-05 24.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|347524472|ref|YP_004782042.1| - 8.2e-05 22.1 0.2 0.00013 21.4 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|347524472|ref|YP_004782042.1| - 0.00012 21.8 0.5 0.00019 21.2 0.1 1.5 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|347524472|ref|YP_004782042.1| - 0.00049 20.0 0.0 0.00069 19.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|347524472|ref|YP_004782042.1| - 0.0008 19.4 0.1 0.0015 18.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|347524472|ref|YP_004782042.1| - 0.001 19.0 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|347524472|ref|YP_004782042.1| - 0.0038 17.1 0.1 0.0056 16.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|347524472|ref|YP_004782042.1| - 0.0047 16.9 0.5 0.0064 16.5 0.5 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|347524472|ref|YP_004782042.1| - 0.0082 16.1 0.8 0.021 14.8 0.8 1.8 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|347524472|ref|YP_004782042.1| - 0.026 14.3 0.3 0.073 12.9 0.1 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|347524472|ref|YP_004782042.1| - 0.036 13.8 2.3 0.06 13.1 2.3 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|347524472|ref|YP_004782042.1| - 0.042 13.8 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_9 PF08221.11 gi|347524472|ref|YP_004782042.1| - 0.047 13.8 0.1 0.079 13.1 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TBPIP PF07106.13 gi|347524472|ref|YP_004782042.1| - 0.067 13.1 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Mga PF05043.13 gi|347524472|ref|YP_004782042.1| - 0.081 13.5 0.0 0.16 12.6 0.0 1.4 2 0 0 2 2 2 0 Mga helix-turn-helix domain DUF977 PF06163.11 gi|347524472|ref|YP_004782042.1| - 0.11 12.5 0.9 0.16 12.0 0.9 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Cdc6_C PF09079.11 gi|347524473|ref|YP_004782043.1| - 1.2e-19 70.0 0.0 3.4e-19 68.6 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|347524473|ref|YP_004782043.1| - 1.5e-13 51.2 0.0 3.9e-13 49.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|347524473|ref|YP_004782043.1| - 1.3e-08 35.4 0.1 2.9e-07 31.0 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|347524473|ref|YP_004782043.1| - 4.8e-07 29.4 0.0 7.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|347524473|ref|YP_004782043.1| - 1.5e-05 25.4 0.0 3e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|347524473|ref|YP_004782043.1| - 2.1e-05 24.5 0.0 3.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|347524473|ref|YP_004782043.1| - 0.00013 22.0 0.0 0.00019 21.4 0.0 1.3 1 0 0 1 1 1 1 NACHT domain TIP49_C PF17856.1 gi|347524473|ref|YP_004782043.1| - 0.027 14.6 0.1 0.081 13.1 0.0 1.8 2 0 0 2 2 2 0 TIP49 AAA-lid domain AAA_24 PF13479.6 gi|347524473|ref|YP_004782043.1| - 0.066 12.9 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|347524473|ref|YP_004782043.1| - 0.077 13.3 0.0 0.22 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA C-terminal domain DUF815 PF05673.13 gi|347524473|ref|YP_004782043.1| - 0.12 11.6 0.1 0.34 10.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) MMR_HSR1 PF01926.23 gi|347524473|ref|YP_004782043.1| - 0.14 12.2 0.0 0.4 10.8 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|347524473|ref|YP_004782043.1| - 0.17 12.4 0.0 2 9.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain HhH-GPD PF00730.25 gi|347524474|ref|YP_004782044.1| - 5e-18 65.5 0.0 8e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|347524474|ref|YP_004782044.1| - 0.031 14.2 0.1 0.064 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Enolase_C PF00113.22 gi|347524475|ref|YP_004782045.1| - 5.3e-113 377.2 0.0 7e-113 376.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|347524475|ref|YP_004782045.1| - 2.9e-50 169.8 0.0 4.7e-50 169.1 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|347524475|ref|YP_004782045.1| - 5.8e-10 39.1 0.0 8.8e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|347524475|ref|YP_004782045.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus TrkA_N PF02254.18 gi|347524476|ref|YP_004782046.1| - 8.9e-30 103.3 2.8 2.4e-29 101.9 2.3 1.8 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|347524476|ref|YP_004782046.1| - 2.7e-09 37.4 0.2 4.5e-09 36.7 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|347524476|ref|YP_004782046.1| - 1.5e-08 34.3 3.1 7.5e-08 32.1 0.2 2.9 3 0 0 3 3 3 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|347524476|ref|YP_004782046.1| - 1.9e-07 31.4 0.5 5.1e-07 30.0 0.3 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|347524476|ref|YP_004782046.1| - 1.5e-06 27.9 0.1 3e-06 26.9 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family UDPG_MGDP_dh_N PF03721.14 gi|347524476|ref|YP_004782046.1| - 2.7e-06 27.1 0.1 4.3e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|347524476|ref|YP_004782046.1| - 6.3e-06 26.2 0.0 8.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|347524476|ref|YP_004782046.1| - 1.1e-05 25.4 0.2 1.5e-05 25.0 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|347524476|ref|YP_004782046.1| - 2.4e-05 24.8 0.1 6.5e-05 23.4 0.1 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|347524476|ref|YP_004782046.1| - 3.7e-05 23.8 0.0 6.8e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|347524476|ref|YP_004782046.1| - 7.4e-05 23.3 0.1 0.00014 22.4 0.1 1.4 1 1 0 1 1 1 1 XdhC Rossmann domain ApbA PF02558.16 gi|347524476|ref|YP_004782046.1| - 0.00013 21.6 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|347524476|ref|YP_004782046.1| - 0.00013 21.6 0.5 0.0022 17.6 0.2 2.1 1 1 1 2 2 2 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|347524476|ref|YP_004782046.1| - 0.00015 21.3 0.1 0.00042 19.8 0.0 1.7 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase ADH_zinc_N PF00107.26 gi|347524476|ref|YP_004782046.1| - 0.0002 21.3 0.2 0.16 12.0 0.0 2.2 2 0 0 2 2 2 2 Zinc-binding dehydrogenase ThiF PF00899.21 gi|347524476|ref|YP_004782046.1| - 0.00021 20.8 2.5 0.044 13.1 0.3 2.1 1 1 1 2 2 2 2 ThiF family NAD_binding_2 PF03446.15 gi|347524476|ref|YP_004782046.1| - 0.00046 20.4 0.0 0.00071 19.8 0.0 1.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|347524476|ref|YP_004782046.1| - 0.00055 19.3 0.2 0.00082 18.7 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|347524476|ref|YP_004782046.1| - 0.00056 19.6 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase adh_short PF00106.25 gi|347524476|ref|YP_004782046.1| - 0.0011 18.5 0.1 0.0023 17.4 0.0 1.5 1 1 0 1 1 1 1 short chain dehydrogenase Methyltransf_25 PF13649.6 gi|347524476|ref|YP_004782046.1| - 0.0011 19.6 0.1 0.0019 18.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain FAD_binding_3 PF01494.19 gi|347524476|ref|YP_004782046.1| - 0.0027 17.0 0.0 0.0045 16.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|347524476|ref|YP_004782046.1| - 0.0062 15.9 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|347524476|ref|YP_004782046.1| - 0.012 15.6 0.0 0.016 15.2 0.0 1.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|347524476|ref|YP_004782046.1| - 0.012 16.1 0.0 0.047 14.2 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Semialdhyde_dh PF01118.24 gi|347524476|ref|YP_004782046.1| - 0.021 15.3 0.0 0.045 14.2 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|347524476|ref|YP_004782046.1| - 0.027 15.3 0.0 0.051 14.4 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CbiA PF01656.23 gi|347524476|ref|YP_004782046.1| - 0.05 13.6 0.0 0.073 13.1 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pyr_redox_2 PF07992.14 gi|347524476|ref|YP_004782046.1| - 0.056 12.7 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase RmlD_sub_bind PF04321.17 gi|347524476|ref|YP_004782046.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Peptidase_S24 PF00717.23 gi|347524476|ref|YP_004782046.1| - 0.12 12.4 0.1 0.31 11.0 0.1 1.7 1 0 0 1 1 1 0 Peptidase S24-like MS_channel PF00924.18 gi|347524477|ref|YP_004782047.1| - 2.9e-10 40.1 0.5 4e-10 39.6 0.5 1.3 1 1 0 1 1 1 1 Mechanosensitive ion channel DUF2109 PF09882.9 gi|347524477|ref|YP_004782047.1| - 0.03 14.3 5.8 1.6 8.8 1.5 2.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) HisKA_3 PF07730.13 gi|347524477|ref|YP_004782047.1| - 0.13 12.8 1.1 0.23 12.0 0.3 1.9 2 0 0 2 2 2 0 Histidine kinase Ubiq_cyt_C_chap PF03981.12 gi|347524477|ref|YP_004782047.1| - 0.2 11.7 2.0 1.2 9.2 0.1 2.1 2 0 0 2 2 2 0 Ubiquinol-cytochrome C chaperone Zn-ribbon_8 PF09723.10 gi|347524478|ref|YP_004782048.1| - 0.0005 20.1 1.8 0.26 11.5 0.5 2.3 2 0 0 2 2 2 2 Zinc ribbon domain FYDLN_acid PF09538.10 gi|347524478|ref|YP_004782048.1| - 0.00086 20.0 0.4 0.29 11.8 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (FYDLN_acid) CpXC PF14353.6 gi|347524478|ref|YP_004782048.1| - 0.001 19.1 0.1 0.0015 18.6 0.1 1.3 1 0 0 1 1 1 1 CpXC protein zf-ribbon_3 PF13248.6 gi|347524478|ref|YP_004782048.1| - 0.0011 18.3 4.2 0.33 10.4 0.5 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|347524478|ref|YP_004782048.1| - 0.0014 18.3 2.6 0.1 12.3 0.1 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|347524478|ref|YP_004782048.1| - 0.0022 17.9 0.3 1.4 8.9 0.0 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|347524478|ref|YP_004782048.1| - 0.0032 17.1 4.5 0.34 10.7 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TFIIS_C PF01096.18 gi|347524478|ref|YP_004782048.1| - 0.0034 17.2 2.7 0.08 12.8 0.2 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) DZR PF12773.7 gi|347524478|ref|YP_004782048.1| - 0.0035 17.3 0.6 0.011 15.8 0.6 1.7 1 1 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|347524478|ref|YP_004782048.1| - 0.0044 17.4 0.2 0.0073 16.7 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.6 gi|347524478|ref|YP_004782048.1| - 0.0046 16.7 2.1 0.13 12.0 0.1 2.6 2 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|347524478|ref|YP_004782048.1| - 0.0049 16.8 2.3 0.13 12.2 0.1 2.5 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|347524478|ref|YP_004782048.1| - 0.005 16.3 1.4 2.3 7.8 0.0 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|347524478|ref|YP_004782048.1| - 0.0072 16.3 2.3 2.1 8.4 0.1 2.2 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.7 gi|347524478|ref|YP_004782048.1| - 0.0073 16.3 5.2 1.4 9.0 5.9 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-3CxxC_2 PF17180.4 gi|347524478|ref|YP_004782048.1| - 0.011 16.4 0.1 0.24 12.2 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding domain zf-ISL3 PF14690.6 gi|347524478|ref|YP_004782048.1| - 0.011 16.3 4.0 0.33 11.6 0.1 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.16 gi|347524478|ref|YP_004782048.1| - 0.015 15.3 3.9 0.41 10.7 0.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_9 PF14369.6 gi|347524478|ref|YP_004782048.1| - 0.019 15.2 1.1 0.81 10.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon DUF4379 PF14311.6 gi|347524478|ref|YP_004782048.1| - 0.022 15.1 0.5 0.17 12.2 0.0 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain UPF0547 PF10571.9 gi|347524478|ref|YP_004782048.1| - 0.027 14.6 4.3 0.18 11.9 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|347524478|ref|YP_004782048.1| - 0.034 14.1 2.1 1.5 8.9 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-3CxxC PF13695.6 gi|347524478|ref|YP_004782048.1| - 0.04 14.4 0.1 0.14 12.7 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding domain DUF1610 PF07754.11 gi|347524478|ref|YP_004782048.1| - 0.044 13.7 6.9 0.15 12.1 1.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_RNApol_7kD PF03604.13 gi|347524478|ref|YP_004782048.1| - 0.046 13.4 2.5 5 6.9 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ZPR1 PF03367.13 gi|347524478|ref|YP_004782048.1| - 0.053 13.4 0.3 0.071 13.0 0.3 1.4 1 1 0 1 1 1 0 ZPR1 zinc-finger domain zf-IS66 PF13005.7 gi|347524478|ref|YP_004782048.1| - 0.055 13.9 4.1 0.35 11.3 3.0 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|347524478|ref|YP_004782048.1| - 0.065 12.6 0.4 6.5 6.2 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger HypA PF01155.19 gi|347524478|ref|YP_004782048.1| - 0.083 12.9 0.2 0.2 11.7 0.2 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|347524478|ref|YP_004782048.1| - 0.13 12.0 0.9 4.5 7.1 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf_UBZ PF18439.1 gi|347524478|ref|YP_004782048.1| - 0.13 11.9 2.1 6.9 6.4 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|347524478|ref|YP_004782048.1| - 0.17 11.9 3.5 9.6 6.2 0.1 2.8 3 0 0 3 3 3 0 Nudix N-terminal zf-FPG_IleRS PF06827.14 gi|347524478|ref|YP_004782048.1| - 0.18 11.7 4.6 1.2 9.1 0.7 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.12 gi|347524478|ref|YP_004782048.1| - 0.22 11.9 3.3 4.2 7.7 0.2 2.5 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Elf1 PF05129.13 gi|347524478|ref|YP_004782048.1| - 0.28 11.2 1.3 1.1 9.4 0.1 2.2 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-Mss51 PF13824.6 gi|347524478|ref|YP_004782048.1| - 2.8 8.1 4.7 27 4.9 4.7 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HupE_UreJ PF04955.12 gi|347524479|ref|YP_004782049.1| - 0.011 15.2 5.7 0.011 15.2 5.7 2.1 1 1 0 2 2 2 0 HupE / UreJ protein Peptidase_S24 PF00717.23 gi|347524480|ref|YP_004782050.1| - 3.3e-09 36.6 0.0 4.7e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like Topoisom_bac PF01131.20 gi|347524481|ref|YP_004782051.1| - 2.4e-107 359.5 0.0 2.9e-107 359.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|347524481|ref|YP_004782051.1| - 2.7e-11 43.6 0.0 6e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Toprim domain Peptidase_M50 PF02163.22 gi|347524482|ref|YP_004782052.1| - 4.8e-12 45.7 14.6 1.3e-07 31.2 1.9 2.9 1 1 1 2 2 2 2 Peptidase family M50 RNA_pol_Rpb6 PF01192.22 gi|347524483|ref|YP_004782053.1| - 1.4e-12 47.3 0.0 1.9e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.24 gi|347524484|ref|YP_004782054.1| - 7.7e-181 602.0 13.1 8.8e-181 601.8 13.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF1993 PF09351.10 gi|347524484|ref|YP_004782054.1| - 0.17 12.0 0.6 0.56 10.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1993) EIF_2_alpha PF07541.12 gi|347524484|ref|YP_004782054.1| - 0.71 10.0 3.0 8.2 6.6 1.8 3.2 2 1 0 2 2 2 0 Eukaryotic translation initiation factor 2 alpha subunit Ribosomal_S17e PF00833.18 gi|347524485|ref|YP_004782055.1| - 2.1e-16 59.9 0.2 2.6e-16 59.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 Thioredoxin_3 PF13192.6 gi|347524486|ref|YP_004782056.1| - 2.8e-05 24.1 0.0 5.2e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain DOT1 PF08123.13 gi|347524487|ref|YP_004782057.1| - 6.8e-09 35.6 0.0 3.8e-07 29.8 0.0 2.1 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.6 gi|347524487|ref|YP_004782057.1| - 2.2e-08 34.7 0.0 3.4e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|347524487|ref|YP_004782057.1| - 9.5e-08 32.0 0.0 1.4e-07 31.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|347524487|ref|YP_004782057.1| - 8.6e-07 29.5 0.1 1.5e-06 28.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|347524487|ref|YP_004782057.1| - 6.1e-06 25.8 0.3 8e-06 25.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_2 PF00891.18 gi|347524487|ref|YP_004782057.1| - 0.0002 20.7 0.1 0.00026 20.4 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain RrnaAD PF00398.20 gi|347524487|ref|YP_004782057.1| - 0.00037 19.6 0.0 0.00048 19.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|347524487|ref|YP_004782057.1| - 0.00069 19.0 0.0 0.00091 18.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|347524487|ref|YP_004782057.1| - 0.0018 18.2 0.1 0.0026 17.7 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|347524487|ref|YP_004782057.1| - 0.027 13.8 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|347524487|ref|YP_004782057.1| - 0.05 14.3 0.0 0.074 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|347524487|ref|YP_004782057.1| - 0.096 12.1 0.0 0.18 11.2 0.0 1.4 2 0 0 2 2 2 0 Putative methyltransferase TPMT PF05724.11 gi|347524487|ref|YP_004782057.1| - 0.098 12.3 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DUF2993 PF11209.8 gi|347524487|ref|YP_004782057.1| - 0.11 12.7 1.6 0.24 11.6 1.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) MTS PF05175.14 gi|347524487|ref|YP_004782057.1| - 0.19 11.3 0.0 0.26 10.8 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain Arabinose_Isome PF02610.15 gi|347524489|ref|YP_004782059.1| - 7.4e-05 22.1 0.0 0.00012 21.4 0.0 1.3 1 0 0 1 1 1 1 L-arabinose isomerase Peripla_BP_6 PF13458.6 gi|347524489|ref|YP_004782059.1| - 0.038 13.7 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Fucose_iso_C PF02952.17 gi|347524489|ref|YP_004782059.1| - 0.083 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 L-fucose isomerase, C-terminal domain RIO1 PF01163.22 gi|347524490|ref|YP_004782060.1| - 1.8e-61 207.0 0.3 2.2e-61 206.8 0.3 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|347524490|ref|YP_004782060.1| - 6e-07 29.6 0.4 0.062 13.2 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|347524490|ref|YP_004782060.1| - 0.00055 18.8 0.1 0.00098 18.0 0.1 1.3 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|347524490|ref|YP_004782060.1| - 0.004 16.5 0.5 0.013 14.8 0.1 2.1 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family eIF-1a PF01176.19 gi|347524491|ref|YP_004782061.1| - 1.1e-17 63.6 0.0 1.5e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Peptidase_S24 PF00717.23 gi|347524491|ref|YP_004782061.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase S24-like NMD3 PF04981.13 gi|347524492|ref|YP_004782062.1| - 4.1e-47 160.7 0.0 5e-47 160.4 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|347524492|ref|YP_004782062.1| - 0.093 12.8 2.2 2.5 8.2 0.8 2.6 2 1 0 2 2 2 0 Double zinc ribbon CxC4 PF18717.1 gi|347524492|ref|YP_004782062.1| - 0.36 10.7 2.1 5 7.0 0.6 2.3 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Zn-ribbon_8 PF09723.10 gi|347524492|ref|YP_004782062.1| - 0.39 10.9 3.6 9.5 6.4 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain DUF4428 PF14471.6 gi|347524492|ref|YP_004782062.1| - 0.71 9.8 2.9 8.4 6.4 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4428) DUF35_N PF12172.8 gi|347524492|ref|YP_004782062.1| - 3.4 7.6 8.0 4.2 7.3 0.2 3.5 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF424 PF04242.13 gi|347524493|ref|YP_004782063.1| - 1.7e-25 89.1 0.0 1.9e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Ribosomal_60s PF00428.19 gi|347524494|ref|YP_004782064.1| - 1.8e-18 66.9 18.8 2.1e-18 66.7 18.8 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein MPP6 PF10175.9 gi|347524494|ref|YP_004782064.1| - 0.0058 17.1 1.9 0.032 14.7 1.5 1.9 2 0 0 2 2 2 1 M-phase phosphoprotein 6 Adeno_PV PF03910.13 gi|347524494|ref|YP_004782064.1| - 0.008 14.9 0.6 0.0099 14.6 0.6 1.0 1 0 0 1 1 1 1 Adenovirus minor core protein PV HTH_3 PF01381.22 gi|347524494|ref|YP_004782064.1| - 0.013 15.5 0.3 0.071 13.2 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix PhetRS_B1 PF18262.1 gi|347524494|ref|YP_004782064.1| - 0.019 15.1 0.0 0.019 15.1 0.0 1.9 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain DUF3391 PF11871.8 gi|347524494|ref|YP_004782064.1| - 0.034 14.7 3.8 0.046 14.3 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) UPF0154 PF03672.13 gi|347524494|ref|YP_004782064.1| - 0.038 14.0 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) DUF2789 PF10982.8 gi|347524494|ref|YP_004782064.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) DUF3824 PF12868.7 gi|347524494|ref|YP_004782064.1| - 0.15 12.7 5.7 0.19 12.4 5.7 1.1 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) RRN3 PF05327.11 gi|347524494|ref|YP_004782064.1| - 0.21 10.1 0.1 0.24 9.9 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Cytomega_UL84 PF06284.11 gi|347524494|ref|YP_004782064.1| - 0.33 9.4 2.2 0.35 9.3 2.2 1.0 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein Prenyltransf PF01255.19 gi|347524495|ref|YP_004782065.1| - 9.1e-66 221.6 0.0 1.1e-65 221.4 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF373 PF04123.13 gi|347524496|ref|YP_004782066.1| - 1.3e-82 278.0 16.1 1.6e-82 277.7 16.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Seryl_tRNA_N PF02403.22 gi|347524497|ref|YP_004782067.1| - 2.1e-08 34.3 34.0 1.9e-05 24.8 9.5 3.3 2 1 1 3 3 3 3 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.11 gi|347524497|ref|YP_004782067.1| - 5.8e-08 32.0 37.5 0.00023 20.2 11.1 2.7 1 1 2 3 3 3 2 Spc7 kinetochore protein Snapin_Pallidin PF14712.6 gi|347524497|ref|YP_004782067.1| - 1.6e-07 31.6 31.8 0.00066 20.0 2.0 4.9 2 2 2 4 4 4 2 Snapin/Pallidin GAS PF13851.6 gi|347524497|ref|YP_004782067.1| - 3.2e-06 26.6 37.3 0.0006 19.2 14.6 3.2 2 1 1 3 3 3 3 Growth-arrest specific micro-tubule binding LPP PF04728.13 gi|347524497|ref|YP_004782067.1| - 4.2e-06 27.0 5.7 0.29 11.5 0.5 4.9 2 2 3 5 5 5 1 Lipoprotein leucine-zipper Baculo_PEP_C PF04513.12 gi|347524497|ref|YP_004782067.1| - 5.2e-06 26.5 8.6 0.02 14.9 0.1 2.9 1 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|347524497|ref|YP_004782067.1| - 1.1e-05 25.6 7.8 0.021 15.1 0.9 3.9 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|347524497|ref|YP_004782067.1| - 1.4e-05 25.5 13.4 0.0031 18.0 1.9 4.6 2 2 0 3 3 2 1 Nucleopolyhedrovirus P10 protein ATG16 PF08614.11 gi|347524497|ref|YP_004782067.1| - 1.6e-05 25.2 38.0 0.0035 17.6 11.3 2.4 1 1 0 2 2 2 2 Autophagy protein 16 (ATG16) Laminin_I PF06008.14 gi|347524497|ref|YP_004782067.1| - 2.1e-05 24.4 21.7 0.00026 20.8 6.2 2.3 2 0 0 2 2 2 2 Laminin Domain I Sec34 PF04136.15 gi|347524497|ref|YP_004782067.1| - 2.7e-05 24.1 11.5 0.013 15.4 0.3 3.3 2 2 1 3 3 3 2 Sec34-like family DUF1664 PF07889.12 gi|347524497|ref|YP_004782067.1| - 6.1e-05 23.0 24.8 0.042 13.9 6.7 4.0 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|347524497|ref|YP_004782067.1| - 0.00014 21.9 31.7 0.04 14.0 3.3 3.5 1 1 1 3 3 3 3 TPR/MLP1/MLP2-like protein ZapB PF06005.12 gi|347524497|ref|YP_004782067.1| - 0.00015 22.1 50.4 0.028 14.9 18.0 5.2 2 2 3 5 5 4 3 Cell division protein ZapB Atg14 PF10186.9 gi|347524497|ref|YP_004782067.1| - 0.00017 20.8 38.8 0.0027 16.9 13.7 2.3 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 KASH_CCD PF14662.6 gi|347524497|ref|YP_004782067.1| - 0.00017 21.5 42.4 0.0021 17.9 18.4 3.0 1 1 2 3 3 3 1 Coiled-coil region of CCDC155 or KASH APG6_N PF17675.1 gi|347524497|ref|YP_004782067.1| - 0.00017 22.1 16.8 0.00017 22.1 16.8 3.7 1 1 1 2 2 1 1 Apg6 coiled-coil region DUF3584 PF12128.8 gi|347524497|ref|YP_004782067.1| - 0.00027 18.6 33.4 0.00035 18.2 33.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF3450 PF11932.8 gi|347524497|ref|YP_004782067.1| - 0.00034 20.0 32.5 0.0096 15.2 4.1 2.9 1 1 0 2 2 2 2 Protein of unknown function (DUF3450) YabA PF06156.13 gi|347524497|ref|YP_004782067.1| - 0.00036 21.1 28.4 0.0061 17.2 4.6 4.3 1 1 3 4 4 4 2 Initiation control protein YabA MCPsignal PF00015.21 gi|347524497|ref|YP_004782067.1| - 0.00053 19.8 4.2 0.00053 19.8 4.2 2.7 1 1 3 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain IFT57 PF10498.9 gi|347524497|ref|YP_004782067.1| - 0.00058 18.9 9.2 0.00058 18.9 9.2 2.3 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Laminin_II PF06009.12 gi|347524497|ref|YP_004782067.1| - 0.00058 19.9 24.4 0.0034 17.4 5.2 3.0 1 1 2 3 3 3 1 Laminin Domain II WXG100 PF06013.12 gi|347524497|ref|YP_004782067.1| - 0.00067 19.8 6.9 0.011 16.0 0.2 4.0 2 2 0 2 2 2 1 Proteins of 100 residues with WXG TolA_bind_tri PF16331.5 gi|347524497|ref|YP_004782067.1| - 0.00069 19.6 44.7 0.015 15.4 4.9 5.1 3 2 2 5 5 4 2 TolA binding protein trimerisation COG5 PF10392.9 gi|347524497|ref|YP_004782067.1| - 0.00078 19.6 16.6 0.0023 18.1 2.5 3.0 2 1 0 2 2 2 1 Golgi transport complex subunit 5 DUF5082 PF16888.5 gi|347524497|ref|YP_004782067.1| - 0.00099 19.4 28.8 0.26 11.6 1.1 4.3 1 1 3 4 4 4 2 Domain of unknown function (DUF5082) TMPIT PF07851.13 gi|347524497|ref|YP_004782067.1| - 0.0012 18.2 17.9 0.0071 15.6 1.0 2.7 1 1 1 3 3 3 3 TMPIT-like protein Filament PF00038.21 gi|347524497|ref|YP_004782067.1| - 0.0012 18.5 35.5 0.0021 17.7 35.5 1.4 1 0 0 1 1 1 1 Intermediate filament protein HAP1_N PF04849.13 gi|347524497|ref|YP_004782067.1| - 0.0024 17.1 33.9 0.023 13.9 14.7 2.5 1 1 1 2 2 2 2 HAP1 N-terminal conserved region ISG65-75 PF11727.8 gi|347524497|ref|YP_004782067.1| - 0.0026 17.1 3.0 0.0026 17.1 3.0 2.1 2 0 0 2 2 2 1 Invariant surface glycoprotein Cep57_CLD_2 PF14197.6 gi|347524497|ref|YP_004782067.1| - 0.0034 17.4 7.7 0.0034 17.4 7.7 4.1 2 2 2 4 4 4 1 Centrosome localisation domain of PPC89 MscS_porin PF12795.7 gi|347524497|ref|YP_004782067.1| - 0.0035 16.9 3.4 0.0035 16.9 3.4 3.1 1 1 2 3 3 2 1 Mechanosensitive ion channel porin domain EzrA PF06160.12 gi|347524497|ref|YP_004782067.1| - 0.0035 15.6 32.1 0.0072 14.6 14.2 2.6 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA Mod_r PF07200.13 gi|347524497|ref|YP_004782067.1| - 0.0043 17.2 26.5 0.19 11.9 12.1 3.2 1 1 2 3 3 3 2 Modifier of rudimentary (Mod(r)) protein DUF4201 PF13870.6 gi|347524497|ref|YP_004782067.1| - 0.0048 16.7 36.2 0.037 13.8 15.4 3.7 1 1 2 3 3 3 1 Domain of unknown function (DUF4201) SKA2 PF16740.5 gi|347524497|ref|YP_004782067.1| - 0.0056 16.4 29.3 0.46 10.3 2.7 4.7 1 1 2 3 3 3 2 Spindle and kinetochore-associated protein 2 Fez1 PF06818.15 gi|347524497|ref|YP_004782067.1| - 0.0057 17.1 9.6 0.0057 17.1 9.6 2.4 1 1 1 2 2 2 1 Fez1 ALIX_LYPXL_bnd PF13949.6 gi|347524497|ref|YP_004782067.1| - 0.0086 15.4 31.7 0.19 11.0 21.5 2.6 1 1 1 2 2 2 1 ALIX V-shaped domain binding to HIV CENP-F_leu_zip PF10473.9 gi|347524497|ref|YP_004782067.1| - 0.0093 16.0 44.4 0.19 11.7 16.4 3.6 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1319 PF07028.11 gi|347524497|ref|YP_004782067.1| - 0.011 15.9 2.0 0.011 15.9 2.0 4.1 1 1 1 3 3 3 0 Protein of unknown function (DUF1319) FliJ PF02050.16 gi|347524497|ref|YP_004782067.1| - 0.011 15.9 7.6 0.011 15.9 7.6 3.4 1 1 2 3 3 3 0 Flagellar FliJ protein Lectin_N PF03954.14 gi|347524497|ref|YP_004782067.1| - 0.011 15.4 9.3 0.33 10.7 0.1 3.4 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain Tho2 PF11262.8 gi|347524497|ref|YP_004782067.1| - 0.011 14.9 2.5 0.011 14.9 2.5 2.3 2 1 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 APG17 PF04108.12 gi|347524497|ref|YP_004782067.1| - 0.012 14.8 3.6 0.012 14.8 3.6 2.9 2 1 0 2 2 2 0 Autophagy protein Apg17 Syntaxin_2 PF14523.6 gi|347524497|ref|YP_004782067.1| - 0.012 16.0 20.5 0.69 10.3 3.4 3.7 2 2 1 3 3 3 0 Syntaxin-like protein HMMR_N PF15905.5 gi|347524497|ref|YP_004782067.1| - 0.012 15.1 34.0 0.035 13.6 14.3 2.2 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal HemX PF04375.14 gi|347524497|ref|YP_004782067.1| - 0.013 14.8 16.6 0.34 10.2 1.9 2.6 2 1 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase HAUS-augmin3 PF14932.6 gi|347524497|ref|YP_004782067.1| - 0.014 15.0 22.9 0.74 9.3 15.4 2.6 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 ADIP PF11559.8 gi|347524497|ref|YP_004782067.1| - 0.014 15.4 35.2 0.099 12.7 7.3 3.0 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Med30 PF11315.8 gi|347524497|ref|YP_004782067.1| - 0.015 15.5 5.5 0.015 15.5 5.5 3.9 2 2 2 4 4 4 0 Mediator complex subunit 30 LXG PF04740.12 gi|347524497|ref|YP_004782067.1| - 0.02 14.6 11.7 0.37 10.5 1.1 3.2 2 2 0 2 2 2 0 LXG domain of WXG superfamily Uso1_p115_C PF04871.13 gi|347524497|ref|YP_004782067.1| - 0.021 15.2 22.6 0.2 12.0 5.0 3.4 2 1 1 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4407 PF14362.6 gi|347524497|ref|YP_004782067.1| - 0.024 14.0 23.1 0.54 9.6 12.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Herpes_UL6 PF01763.16 gi|347524497|ref|YP_004782067.1| - 0.025 13.1 12.9 0.12 10.9 4.2 2.4 2 0 0 2 2 2 0 Herpesvirus UL6 like DUF2935 PF11155.8 gi|347524497|ref|YP_004782067.1| - 0.028 14.7 8.1 1.9 8.9 0.1 3.5 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) BLOC1_2 PF10046.9 gi|347524497|ref|YP_004782067.1| - 0.031 14.6 20.8 0.037 14.3 2.3 4.4 1 1 5 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Golgin_A5 PF09787.9 gi|347524497|ref|YP_004782067.1| - 0.031 13.7 38.1 0.052 13.0 12.2 2.8 1 1 2 3 3 3 0 Golgin subfamily A member 5 UPF0242 PF06785.11 gi|347524497|ref|YP_004782067.1| - 0.033 14.3 34.6 0.96 9.5 11.8 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Occludin_ELL PF07303.13 gi|347524497|ref|YP_004782067.1| - 0.036 14.8 21.7 0.23 12.2 0.6 3.6 1 1 2 3 3 3 0 Occludin homology domain AAA_13 PF13166.6 gi|347524497|ref|YP_004782067.1| - 0.036 12.7 24.3 0.28 9.8 17.6 2.1 1 1 1 2 2 2 0 AAA domain DUF4618 PF15397.6 gi|347524497|ref|YP_004782067.1| - 0.05 13.0 33.6 0.17 11.3 19.7 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) T3SSipB PF16535.5 gi|347524497|ref|YP_004782067.1| - 0.054 14.0 4.7 1.3 9.5 0.2 2.6 1 1 0 2 2 2 0 Type III cell invasion protein SipB CENP-H PF05837.12 gi|347524497|ref|YP_004782067.1| - 0.055 13.9 37.3 1 9.8 2.6 4.2 1 1 3 4 4 4 0 Centromere protein H (CENP-H) DUF16 PF01519.16 gi|347524497|ref|YP_004782067.1| - 0.056 13.9 23.7 1.4 9.4 7.0 3.8 1 1 2 3 3 3 0 Protein of unknown function DUF16 HOOK PF05622.12 gi|347524497|ref|YP_004782067.1| - 0.058 11.5 37.9 0.26 9.4 38.1 1.8 1 1 0 1 1 1 0 HOOK protein FPP PF05911.11 gi|347524497|ref|YP_004782067.1| - 0.06 11.5 27.4 0.011 14.0 9.0 2.0 1 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil Jnk-SapK_ap_N PF09744.9 gi|347524497|ref|YP_004782067.1| - 0.067 13.4 37.8 0.037 14.2 11.4 3.2 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 Tup_N PF08581.10 gi|347524497|ref|YP_004782067.1| - 0.071 13.4 31.0 0.12 12.7 2.8 5.1 2 2 2 4 4 4 0 Tup N-terminal ApoLp-III PF07464.11 gi|347524497|ref|YP_004782067.1| - 0.075 13.1 11.2 0.092 12.8 1.8 2.8 1 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) COG6 PF06419.11 gi|347524497|ref|YP_004782067.1| - 0.079 11.2 16.8 0.17 10.0 4.3 2.7 2 1 0 2 2 2 0 Conserved oligomeric complex COG6 FlaC_arch PF05377.11 gi|347524497|ref|YP_004782067.1| - 0.079 13.4 24.0 0.86 10.0 1.0 6.1 3 2 3 6 6 4 0 Flagella accessory protein C (FlaC) RmuC PF02646.16 gi|347524497|ref|YP_004782067.1| - 0.089 11.9 20.6 0.055 12.6 2.8 3.9 2 2 2 4 4 3 0 RmuC family YlbD_coat PF14071.6 gi|347524497|ref|YP_004782067.1| - 0.1 12.9 2.6 3.5 7.9 0.1 3.0 2 1 1 3 3 3 0 Putative coat protein eIF3_N PF09440.10 gi|347524497|ref|YP_004782067.1| - 0.12 12.8 14.4 0.53 10.7 1.3 3.6 2 2 1 3 3 2 0 eIF3 subunit 6 N terminal domain DUF4795 PF16043.5 gi|347524497|ref|YP_004782067.1| - 0.12 12.0 26.3 2.5e+02 1.1 26.3 3.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF812 PF05667.11 gi|347524497|ref|YP_004782067.1| - 0.14 11.0 34.4 0.69 8.7 14.1 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Prominin PF05478.11 gi|347524497|ref|YP_004782067.1| - 0.16 9.9 18.6 0.055 11.4 4.3 2.2 1 1 1 2 2 2 0 Prominin HALZ PF02183.18 gi|347524497|ref|YP_004782067.1| - 0.17 12.1 18.2 0.56 10.5 0.1 4.4 3 1 1 4 4 3 0 Homeobox associated leucine zipper Clusterin PF01093.17 gi|347524497|ref|YP_004782067.1| - 0.17 10.9 7.5 1.7 7.6 2.9 2.2 2 0 0 2 2 2 0 Clusterin Tektin PF03148.14 gi|347524497|ref|YP_004782067.1| - 0.18 10.5 40.2 0.15 10.7 6.0 4.2 1 1 1 3 3 3 0 Tektin family YtxH PF12732.7 gi|347524497|ref|YP_004782067.1| - 0.26 11.9 9.6 5.8e+02 1.1 9.6 4.0 1 1 0 1 1 1 0 YtxH-like protein Nsp1_C PF05064.13 gi|347524497|ref|YP_004782067.1| - 0.26 11.1 14.1 1.9 8.3 1.5 2.6 2 1 0 2 2 2 0 Nsp1-like C-terminal region Vps51 PF08700.11 gi|347524497|ref|YP_004782067.1| - 0.29 11.3 15.5 1.6 8.8 0.7 4.7 2 2 0 2 2 2 0 Vps51/Vps67 COG2 PF06148.11 gi|347524497|ref|YP_004782067.1| - 0.39 10.8 29.3 0.39 10.8 1.0 4.0 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 FliD_C PF07195.12 gi|347524497|ref|YP_004782067.1| - 0.42 10.0 8.2 0.37 10.2 0.2 2.6 2 2 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Bacillus_HBL PF05791.11 gi|347524497|ref|YP_004782067.1| - 0.44 10.4 10.2 4.9 6.9 2.8 3.2 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) STAT_alpha PF01017.20 gi|347524497|ref|YP_004782067.1| - 0.45 10.4 27.2 1.1 9.1 3.1 3.4 2 1 0 2 2 2 0 STAT protein, all-alpha domain betaPIX_CC PF16523.5 gi|347524497|ref|YP_004782067.1| - 0.46 10.3 41.8 0.1 12.5 9.7 5.3 2 2 2 5 5 5 0 betaPIX coiled coil Hormone_1 PF00103.20 gi|347524497|ref|YP_004782067.1| - 0.47 10.2 5.6 3.1 7.5 0.3 2.5 2 0 0 2 2 2 0 Somatotropin hormone family FapA PF03961.13 gi|347524497|ref|YP_004782067.1| - 0.5 8.9 30.2 0.5 8.9 10.4 2.7 1 1 2 3 3 3 0 Flagellar Assembly Protein A Spc24 PF08286.11 gi|347524497|ref|YP_004782067.1| - 0.52 10.6 28.0 2.4 8.4 10.3 4.5 1 1 2 4 4 4 0 Spc24 subunit of Ndc80 FlxA PF14282.6 gi|347524497|ref|YP_004782067.1| - 0.55 10.3 22.3 4.3 7.4 1.3 3.6 2 2 2 4 4 4 0 FlxA-like protein Prefoldin_2 PF01920.20 gi|347524497|ref|YP_004782067.1| - 0.59 10.1 34.9 9.7 6.2 2.5 5.7 1 1 2 4 4 3 0 Prefoldin subunit DUF2203 PF09969.9 gi|347524497|ref|YP_004782067.1| - 0.6 10.8 31.5 3.3 8.5 10.1 4.0 1 1 3 4 4 4 0 Uncharacterized conserved protein (DUF2203) Baculo_F PF12259.8 gi|347524497|ref|YP_004782067.1| - 0.65 8.5 10.3 1.3 7.4 0.4 2.1 2 0 0 2 2 2 0 Baculovirus F protein DUF3800 PF12686.7 gi|347524497|ref|YP_004782067.1| - 0.72 10.5 4.4 80 3.9 4.4 3.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) PspA_IM30 PF04012.12 gi|347524497|ref|YP_004782067.1| - 0.73 9.4 38.9 0.36 10.4 12.2 3.5 1 1 2 3 3 3 0 PspA/IM30 family Scaffolding_pro PF11418.8 gi|347524497|ref|YP_004782067.1| - 0.83 10.3 7.4 6.2 7.4 1.0 2.5 2 0 0 2 2 2 0 Phi29 scaffolding protein KxDL PF10241.9 gi|347524497|ref|YP_004782067.1| - 0.89 9.9 21.0 6.3 7.2 0.2 5.1 2 2 3 5 5 4 0 Uncharacterized conserved protein Cytochrom_B562 PF07361.11 gi|347524497|ref|YP_004782067.1| - 0.92 10.2 6.2 0.71 10.6 0.5 2.9 2 2 0 2 2 2 0 Cytochrome b562 Allexi_40kDa PF05549.11 gi|347524497|ref|YP_004782067.1| - 1.1 8.8 12.7 0.36 10.3 1.1 2.6 1 1 0 2 2 2 0 Allexivirus 40kDa protein 5_nucleotid PF05761.14 gi|347524497|ref|YP_004782067.1| - 1.2 8.0 21.6 0.13 11.1 6.4 2.8 2 1 1 3 3 3 0 5' nucleotidase family DUF1465 PF07323.12 gi|347524497|ref|YP_004782067.1| - 1.3 8.8 22.2 0.14 12.0 1.5 3.4 1 1 1 3 3 2 0 Protein of unknown function (DUF1465) TraF_2 PF13729.6 gi|347524497|ref|YP_004782067.1| - 1.5 8.2 4.3 8.6 5.6 0.5 2.6 2 1 0 2 2 2 0 F plasmid transfer operon, TraF, protein DUF2730 PF10805.8 gi|347524497|ref|YP_004782067.1| - 1.5 8.9 18.3 0.14 12.3 1.4 3.9 1 1 2 4 4 3 0 Protein of unknown function (DUF2730) GLE1 PF07817.13 gi|347524497|ref|YP_004782067.1| - 1.6 7.9 6.0 10 5.2 1.2 2.4 2 0 0 2 2 2 0 GLE1-like protein ApoO PF09769.9 gi|347524497|ref|YP_004782067.1| - 2.1 8.3 6.6 17 5.4 0.1 2.7 2 1 0 2 2 2 0 Apolipoprotein O TMF_TATA_bd PF12325.8 gi|347524497|ref|YP_004782067.1| - 2.2 8.5 41.8 0.48 10.6 9.9 4.1 1 1 3 4 4 4 0 TATA element modulatory factor 1 TATA binding Fib_alpha PF08702.10 gi|347524497|ref|YP_004782067.1| - 2.5 8.3 26.5 0.15 12.3 4.4 3.8 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family bZIP_1 PF00170.21 gi|347524497|ref|YP_004782067.1| - 2.7 8.2 30.5 1.5 9.0 0.1 5.2 3 2 2 5 5 3 0 bZIP transcription factor Tropomyosin_1 PF12718.7 gi|347524497|ref|YP_004782067.1| - 3 8.0 37.5 0.25 11.5 11.6 2.7 1 1 2 3 3 3 0 Tropomyosin like FUSC PF04632.12 gi|347524497|ref|YP_004782067.1| - 3.1 6.2 26.0 1.2 7.6 3.0 2.3 1 1 0 2 2 2 0 Fusaric acid resistance protein family PIN_12 PF16289.5 gi|347524497|ref|YP_004782067.1| - 3.3 8.2 17.5 0.47 10.9 7.5 2.4 1 1 1 2 2 2 0 PIN domain RasGAP_C PF03836.15 gi|347524497|ref|YP_004782067.1| - 3.5 7.8 27.5 6.4 6.9 7.5 4.1 1 1 1 3 3 3 0 RasGAP C-terminus CODH_A_N PF18537.1 gi|347524497|ref|YP_004782067.1| - 4 7.5 4.9 3.2 7.8 0.1 3.2 2 2 0 3 3 2 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain DUF4763 PF15960.5 gi|347524497|ref|YP_004782067.1| - 4 6.7 35.0 0.29 10.4 5.4 3.3 1 1 3 4 4 3 0 Domain of unknown function (DUF4763) DUF4200 PF13863.6 gi|347524497|ref|YP_004782067.1| - 5 7.6 45.6 8.9 6.7 16.9 4.0 1 1 1 2 2 1 0 Domain of unknown function (DUF4200) Exonuc_VII_L PF02601.15 gi|347524497|ref|YP_004782067.1| - 5.4 6.5 30.3 0.13 11.9 5.9 2.1 1 1 1 2 2 2 0 Exonuclease VII, large subunit LUC7 PF03194.15 gi|347524497|ref|YP_004782067.1| - 5.6 6.5 24.4 2.2 7.9 9.4 2.7 1 1 2 3 3 3 0 LUC7 N_terminus Tht1 PF04163.12 gi|347524497|ref|YP_004782067.1| - 5.6 5.6 6.7 2 7.1 1.6 2.0 1 1 1 2 2 2 0 Tht1-like nuclear fusion protein Sec8_exocyst PF04048.14 gi|347524497|ref|YP_004782067.1| - 5.9 6.8 14.1 1.1 9.1 0.5 3.6 2 2 1 3 3 3 0 Sec8 exocyst complex component specific domain BRE1 PF08647.11 gi|347524497|ref|YP_004782067.1| - 6.6 6.9 26.4 4.3 7.5 0.5 4.1 2 2 1 3 3 3 0 BRE1 E3 ubiquitin ligase TMF_DNA_bd PF12329.8 gi|347524497|ref|YP_004782067.1| - 7.3 6.7 36.1 0.19 11.7 2.7 4.7 3 3 2 5 5 4 0 TATA element modulatory factor 1 DNA binding DUF4446 PF14584.6 gi|347524497|ref|YP_004782067.1| - 7.8 6.5 19.1 7.3 6.6 4.4 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF4446) KELK PF15796.5 gi|347524497|ref|YP_004782067.1| - 8.8 6.9 37.4 0.053 14.0 4.3 4.4 2 2 2 4 4 4 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DivIC PF04977.15 gi|347524497|ref|YP_004782067.1| - 8.8 6.2 50.4 0.17 11.7 2.3 6.4 2 2 3 5 5 4 0 Septum formation initiator DUF4735 PF15882.5 gi|347524497|ref|YP_004782067.1| - 8.8 5.7 7.2 2.1 7.7 2.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4735) AKNA PF12443.8 gi|347524497|ref|YP_004782067.1| - 9.3 7.0 11.5 60 4.4 0.1 3.9 3 2 0 3 3 3 0 AT-hook-containing transcription factor DUF2968 PF11180.8 gi|347524497|ref|YP_004782067.1| - 9.5 5.8 37.2 1.1 8.9 16.2 3.9 2 2 2 4 4 4 0 Protein of unknown function (DUF2968) CEP63 PF17045.5 gi|347524497|ref|YP_004782067.1| - 9.8 6.0 39.2 1.1 9.1 31.4 2.1 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa V_ATPase_I PF01496.19 gi|347524497|ref|YP_004782067.1| - 10 3.9 22.9 3 5.6 7.3 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF773 PF05600.12 gi|347524497|ref|YP_004782067.1| - 10 4.7 24.3 0.21 10.3 1.9 3.6 1 1 1 3 3 3 0 CDK5 regulatory subunit-associated protein 3 NADHdh PF00146.21 gi|347524498|ref|YP_004782068.1| - 3.5e-80 269.5 16.8 4.7e-80 269.1 16.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|347524499|ref|YP_004782069.1| - 1.8e-82 276.5 0.0 2.4e-82 276.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GvpL_GvpF PF06386.11 gi|347524501|ref|YP_004782071.1| - 0.0004 20.4 10.0 0.0012 18.8 0.0 2.2 1 1 1 2 2 2 1 Gas vesicle synthesis protein GvpL/GvpF BLOC1_2 PF10046.9 gi|347524501|ref|YP_004782071.1| - 0.015 15.6 1.5 0.13 12.6 0.3 2.7 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.9 gi|347524501|ref|YP_004782071.1| - 0.015 15.3 3.2 0.015 15.3 3.2 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4211 PF13926.6 gi|347524501|ref|YP_004782071.1| - 0.029 14.4 0.1 0.051 13.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) Jnk-SapK_ap_N PF09744.9 gi|347524501|ref|YP_004782071.1| - 0.042 14.1 13.3 0.23 11.7 3.4 3.0 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 DUF3626 PF12294.8 gi|347524501|ref|YP_004782071.1| - 0.048 12.7 0.3 0.071 12.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3626) RRF_GI PF12614.8 gi|347524501|ref|YP_004782071.1| - 0.053 13.7 3.2 1.2 9.3 1.8 2.8 1 1 1 2 2 2 0 Ribosome recycling factor TolA_bind_tri PF16331.5 gi|347524501|ref|YP_004782071.1| - 0.076 13.1 4.9 0.97 9.6 1.0 3.2 2 1 0 2 2 2 0 TolA binding protein trimerisation DUF4800 PF16057.5 gi|347524501|ref|YP_004782071.1| - 0.081 12.2 0.2 0.27 10.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4800) Baculo_PEP_C PF04513.12 gi|347524501|ref|YP_004782071.1| - 0.1 12.6 0.6 0.21 11.7 0.6 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|347524501|ref|YP_004782071.1| - 0.15 12.1 3.3 1.5 8.9 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF16 PF01519.16 gi|347524501|ref|YP_004782071.1| - 0.18 12.3 0.8 0.52 10.8 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 DivIVA PF05103.13 gi|347524501|ref|YP_004782071.1| - 0.56 10.3 8.3 14 5.8 0.0 2.3 1 1 1 2 2 2 0 DivIVA protein DUF4795 PF16043.5 gi|347524501|ref|YP_004782071.1| - 0.58 9.7 3.7 0.86 9.2 1.9 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) HK97-gp10_like PF04883.12 gi|347524501|ref|YP_004782071.1| - 0.64 11.0 6.7 25 5.9 5.1 3.3 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component CENP-H PF05837.12 gi|347524501|ref|YP_004782071.1| - 0.7 10.3 10.5 0.63 10.5 6.1 2.6 3 0 0 3 3 3 0 Centromere protein H (CENP-H) Snapin_Pallidin PF14712.6 gi|347524501|ref|YP_004782071.1| - 1.1 9.8 6.1 13 6.3 1.5 2.7 1 1 1 2 2 2 0 Snapin/Pallidin Spore_III_AB PF09548.10 gi|347524501|ref|YP_004782071.1| - 1.2 9.3 4.4 1.5 8.9 3.5 1.8 2 1 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Phasin PF05597.11 gi|347524501|ref|YP_004782071.1| - 2.3 8.2 8.6 1.2 9.1 5.9 1.9 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Med21 PF11221.8 gi|347524501|ref|YP_004782071.1| - 2.7 8.3 8.4 1.1 9.5 5.1 2.0 2 1 1 3 3 3 0 Subunit 21 of Mediator complex Ribosomal_L13e PF01294.18 gi|347524502|ref|YP_004782072.1| - 4.6e-11 42.9 0.0 5.3e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e AsnC_trans_reg PF01037.21 gi|347524503|ref|YP_004782073.1| - 2.7e-19 68.9 0.2 4.3e-19 68.3 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|347524503|ref|YP_004782073.1| - 1.7e-14 53.0 0.5 4.8e-14 51.7 0.5 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|347524503|ref|YP_004782073.1| - 7e-13 48.2 1.6 7e-13 48.2 1.6 1.9 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|347524503|ref|YP_004782073.1| - 2.1e-07 30.6 0.9 2.1e-07 30.6 0.9 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|347524503|ref|YP_004782073.1| - 2.2e-05 24.3 0.4 5.6e-05 23.0 0.4 1.7 1 1 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|347524503|ref|YP_004782073.1| - 5.8e-05 22.9 0.3 0.00016 21.5 0.1 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|347524503|ref|YP_004782073.1| - 0.00015 21.6 0.1 0.0003 20.7 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|347524503|ref|YP_004782073.1| - 0.00015 21.4 0.8 0.18 11.5 0.1 3.1 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|347524503|ref|YP_004782073.1| - 0.00016 21.7 1.2 0.00028 20.9 0.5 1.7 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|347524503|ref|YP_004782073.1| - 0.00026 20.8 0.4 0.00038 20.3 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family NUMOD1 PF07453.13 gi|347524503|ref|YP_004782073.1| - 0.00041 20.5 0.1 0.29 11.5 0.0 2.3 2 0 0 2 2 2 1 NUMOD1 domain HTH_23 PF13384.6 gi|347524503|ref|YP_004782073.1| - 0.00059 19.6 1.0 0.0049 16.6 0.2 2.3 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.7 gi|347524503|ref|YP_004782073.1| - 0.0011 18.8 0.4 0.0025 17.6 0.4 1.5 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 gi|347524503|ref|YP_004782073.1| - 0.0025 17.8 0.1 0.006 16.6 0.0 1.6 2 0 0 2 2 1 1 FeoC like transcriptional regulator Fe_dep_repress PF01325.19 gi|347524503|ref|YP_004782073.1| - 0.0087 16.2 0.1 0.025 14.8 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|347524503|ref|YP_004782073.1| - 0.014 15.5 1.0 0.19 11.9 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|347524503|ref|YP_004782073.1| - 0.022 15.2 0.2 0.074 13.6 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|347524503|ref|YP_004782073.1| - 0.022 14.5 0.5 0.022 14.5 0.5 1.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|347524503|ref|YP_004782073.1| - 0.025 14.4 0.1 0.052 13.4 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain MIase PF02426.16 gi|347524503|ref|YP_004782073.1| - 0.026 14.7 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 Muconolactone delta-isomerase Ub-Mut7C PF14451.6 gi|347524503|ref|YP_004782073.1| - 0.026 14.4 0.3 2.5 8.0 0.1 2.3 2 0 0 2 2 2 0 Mut7-C ubiquitin LexA_DNA_bind PF01726.16 gi|347524503|ref|YP_004782073.1| - 0.036 13.8 0.1 0.16 11.7 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|347524503|ref|YP_004782073.1| - 0.041 13.3 0.1 0.12 11.9 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 PCI PF01399.27 gi|347524503|ref|YP_004782073.1| - 0.043 14.3 0.0 0.083 13.4 0.0 1.5 1 0 0 1 1 1 0 PCI domain RuvB_C PF05491.13 gi|347524503|ref|YP_004782073.1| - 0.047 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain DUF4342 PF14242.6 gi|347524503|ref|YP_004782073.1| - 0.06 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) HTH_Crp_2 PF13545.6 gi|347524503|ref|YP_004782073.1| - 0.064 13.2 0.8 0.13 12.3 0.2 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2089 PF09862.9 gi|347524503|ref|YP_004782073.1| - 0.098 12.7 0.1 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) GYD PF08734.11 gi|347524503|ref|YP_004782073.1| - 0.098 12.6 0.0 0.29 11.1 0.0 1.7 2 0 0 2 2 2 0 GYD domain GntR PF00392.21 gi|347524503|ref|YP_004782073.1| - 0.099 12.3 0.4 0.099 12.3 0.4 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|347524503|ref|YP_004782073.1| - 0.11 12.7 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|347524503|ref|YP_004782073.1| - 0.12 12.5 0.3 0.19 11.8 0.3 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Chlor_dismutase PF06778.12 gi|347524503|ref|YP_004782073.1| - 0.14 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Chlorite dismutase HTH_Mga PF08280.11 gi|347524503|ref|YP_004782073.1| - 0.19 11.8 0.1 0.4 10.7 0.1 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF211 PF02680.14 gi|347524504|ref|YP_004782074.1| - 3.8e-36 123.1 3.1 4.3e-36 123.0 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 ACT_6 PF13740.6 gi|347524504|ref|YP_004782074.1| - 0.082 12.9 0.1 0.37 10.8 0.0 1.9 1 1 1 2 2 2 0 ACT domain tRNA_bind PF01588.20 gi|347524505|ref|YP_004782075.1| - 8.2e-28 96.4 0.0 9.7e-28 96.1 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Apolipoprotein PF01442.18 gi|347524506|ref|YP_004782076.1| - 0.011 15.6 0.3 0.011 15.6 0.3 1.0 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|347524506|ref|YP_004782076.1| - 0.11 12.5 0.0 0.12 12.4 0.0 1.0 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus HflK_N PF12221.8 gi|347524506|ref|YP_004782076.1| - 0.52 10.4 1.6 1.1 9.3 0.5 1.9 2 0 0 2 2 2 0 Bacterial membrane protein N terminal Ribosomal_S13 PF00416.22 gi|347524507|ref|YP_004782077.1| - 3.7e-44 150.2 0.1 4.3e-44 150.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 MerR_1 PF13411.6 gi|347524507|ref|YP_004782077.1| - 0.071 13.2 0.1 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 MerR HTH family regulatory protein FbpA PF05833.11 gi|347524507|ref|YP_004782077.1| - 0.11 11.3 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|347524508|ref|YP_004782078.1| - 4.6e-14 51.9 0.1 9.5e-14 50.8 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|347524508|ref|YP_004782078.1| - 3.8e-05 24.5 1.8 8.4e-05 23.4 1.0 2.1 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|347524509|ref|YP_004782079.1| - 9e-48 161.2 1.5 1.1e-47 160.9 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 M20_dimer PF07687.14 gi|347524509|ref|YP_004782079.1| - 0.061 13.3 0.2 0.088 12.7 0.2 1.3 1 0 0 1 1 1 0 Peptidase dimerisation domain HMGL-like PF00682.19 gi|347524511|ref|YP_004782081.1| - 1.1e-73 248.0 2.4 1.7e-73 247.5 2.4 1.2 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.21 gi|347524511|ref|YP_004782081.1| - 1.6e-16 60.1 2.8 1.7e-15 56.7 0.2 3.0 3 0 0 3 3 3 1 Lrp/AsnC ligand binding domain FtsX_ECD PF18075.1 gi|347524511|ref|YP_004782081.1| - 0.00017 22.1 0.2 0.36 11.5 0.0 2.7 2 0 0 2 2 2 2 FtsX extracellular domain NapD PF03927.13 gi|347524511|ref|YP_004782081.1| - 0.0004 20.4 1.1 0.0012 18.8 0.3 2.2 2 0 0 2 2 2 1 NapD protein ACT_4 PF13291.6 gi|347524511|ref|YP_004782081.1| - 0.0011 19.5 0.9 0.011 16.3 0.2 2.8 2 1 1 3 3 3 1 ACT domain AlkA_N PF06029.11 gi|347524511|ref|YP_004782081.1| - 0.0031 17.8 0.3 0.22 11.8 0.0 3.0 3 0 0 3 3 3 1 AlkA N-terminal domain AP_endonuc_2 PF01261.24 gi|347524511|ref|YP_004782081.1| - 0.0033 16.9 0.6 0.012 15.0 0.3 2.1 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel Lipase_GDSL_2 PF13472.6 gi|347524511|ref|YP_004782081.1| - 0.0037 17.7 1.0 1.3 9.4 0.1 2.9 1 1 1 2 2 2 1 GDSL-like Lipase/Acylhydrolase family CinA_KH PF18146.1 gi|347524511|ref|YP_004782081.1| - 0.0053 16.9 1.5 0.17 12.0 0.1 3.4 2 1 1 3 3 3 1 Damage-inducible protein CinA KH domain SurA_N_2 PF13623.6 gi|347524511|ref|YP_004782081.1| - 0.03 14.2 0.0 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 SurA N-terminal domain DUF5541 PF17695.1 gi|347524511|ref|YP_004782081.1| - 0.051 14.0 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5541) Glyco_hydro_97 PF10566.9 gi|347524511|ref|YP_004782081.1| - 0.14 11.4 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 DUF4031 PF13223.6 gi|347524511|ref|YP_004782081.1| - 0.19 11.9 1.3 0.27 11.5 0.2 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF4031) Radical_SAM PF04055.21 gi|347524511|ref|YP_004782081.1| - 0.63 10.4 2.8 3.9 7.8 1.0 2.9 2 1 0 2 2 2 0 Radical SAM superfamily DNA_ligase_A_M PF01068.21 gi|347524512|ref|YP_004782082.1| - 9.4e-63 211.5 0.1 1.5e-62 210.9 0.1 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|347524512|ref|YP_004782082.1| - 7e-39 133.9 0.0 1.2e-38 133.2 0.0 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|347524512|ref|YP_004782082.1| - 4.3e-28 97.8 0.0 1.2e-27 96.4 0.0 1.8 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.6 gi|347524512|ref|YP_004782082.1| - 0.0011 18.9 1.1 0.027 14.5 0.0 2.8 3 0 0 3 3 3 1 DNA ligase OB-like domain TYW3 PF02676.14 gi|347524513|ref|YP_004782083.1| - 1.2e-23 83.6 0.0 2e-23 82.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase TYW3 Nitroreductase PF00881.24 gi|347524515|ref|YP_004782085.1| - 5.4e-23 81.9 0.1 6e-22 78.5 0.1 2.2 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|347524515|ref|YP_004782085.1| - 0.00065 19.3 0.0 0.58 9.7 0.0 2.7 2 1 1 3 3 3 2 Putative TM nitroreductase MoCF_biosynth PF00994.24 gi|347524517|ref|YP_004782087.1| - 1e-29 103.0 0.0 1.3e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain GATase PF00117.28 gi|347524517|ref|YP_004782087.1| - 0.038 13.8 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I SRP19 PF01922.17 gi|347524518|ref|YP_004782088.1| - 1e-20 74.4 0.1 1.4e-20 74.1 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein Borrelia_REV PF03978.13 gi|347524518|ref|YP_004782088.1| - 0.063 13.2 0.0 0.071 13.1 0.0 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein AsnC_trans_reg PF01037.21 gi|347524519|ref|YP_004782089.1| - 7.6e-12 45.0 0.4 9.8e-12 44.7 0.4 1.2 1 1 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|347524519|ref|YP_004782089.1| - 0.001 18.9 0.1 0.0012 18.7 0.1 1.1 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|347524519|ref|YP_004782089.1| - 0.011 15.8 0.3 0.016 15.2 0.3 1.4 1 1 0 1 1 1 0 NapD protein pPIWI_RE_REase PF18154.1 gi|347524519|ref|YP_004782089.1| - 0.047 13.7 0.0 0.056 13.4 0.0 1.1 1 0 0 1 1 1 0 REase associating with pPIWI_RE DapH_N PF08503.10 gi|347524519|ref|YP_004782089.1| - 0.053 13.8 1.5 4 7.7 0.0 2.0 1 1 1 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal UPF0128 PF03673.13 gi|347524519|ref|YP_004782089.1| - 0.1 12.1 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) tRNA_deacylase PF04414.12 gi|347524520|ref|YP_004782090.1| - 2.8e-59 200.1 0.0 3.5e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ATP-synt_D PF01813.17 gi|347524521|ref|YP_004782091.1| - 2e-39 135.5 11.3 2.3e-39 135.3 11.3 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Trans_coact PF16805.5 gi|347524521|ref|YP_004782091.1| - 0.081 13.0 2.4 0.13 12.4 0.9 2.2 2 0 0 2 2 2 0 Phage late-transcription coactivator # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrolobus_fumarii_1A_uid73415/NC_015931.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrolobus_fumarii_1A_uid73415/NC_015931.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrolobus_fumarii_1A_uid73415/NC_015931.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrolobus_fumarii_1A_uid73415/NC_015931.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:17:58 2019 # [ok]