# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- GTP_EFTU PF00009.22 gi|156936796|ref|YP_001434592.1| - 3e-34 118.0 0.0 1.1e-33 116.2 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|156936796|ref|YP_001434592.1| - 2.7e-26 91.5 1.3 6.3e-26 90.3 0.9 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|156936796|ref|YP_001434592.1| - 2.3e-24 84.8 0.7 2.3e-24 84.8 0.5 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|156936796|ref|YP_001434592.1| - 8.9e-11 41.7 8.1 6.5e-10 38.9 0.6 3.3 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|156936796|ref|YP_001434592.1| - 5.3e-06 26.3 0.1 2.3e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|156936796|ref|YP_001434592.1| - 5.9e-05 23.5 0.0 0.0002 21.8 0.0 1.9 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|156936796|ref|YP_001434592.1| - 0.0094 15.5 0.0 0.045 13.2 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|156936796|ref|YP_001434592.1| - 0.016 15.0 0.1 0.25 11.1 0.0 2.6 2 0 0 2 2 2 0 Dynamin family MobB PF03205.9 gi|156936796|ref|YP_001434592.1| - 0.056 13.1 0.8 0.32 10.6 0.0 2.6 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ComZ PF10815.3 gi|156936796|ref|YP_001434592.1| - 0.092 12.5 0.0 0.78 9.5 0.0 2.3 2 0 0 2 2 2 0 ComZ DUF2312 PF10073.4 gi|156936796|ref|YP_001434592.1| - 1 8.7 6.9 6.8 6.1 0.6 3.2 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) FAD-oxidase_C PF02913.14 gi|156936797|ref|YP_001434593.1| - 4e-40 137.6 0.0 6.1e-40 137.1 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|156936797|ref|YP_001434593.1| - 2.5e-39 133.9 0.1 4e-39 133.2 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Peptidase_C2 PF00648.16 gi|156936797|ref|YP_001434593.1| - 0.086 11.8 0.1 0.14 11.1 0.1 1.2 1 0 0 1 1 1 0 Calpain family cysteine protease tRNA_int_endo PF01974.12 gi|156936799|ref|YP_001434595.1| - 3e-07 30.1 0.0 4.4e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|156936799|ref|YP_001434595.1| - 0.02 14.4 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 tRNA intron endonuclease, N-terminal domain Cupin_2 PF07883.6 gi|156936799|ref|YP_001434595.1| - 0.074 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Cupin domain SCAN PF02023.12 gi|156936799|ref|YP_001434595.1| - 0.1 12.0 0.1 4.8 6.7 0.0 2.2 2 0 0 2 2 2 0 SCAN domain tRNA_int_end_N2 PF12928.2 gi|156936799|ref|YP_001434595.1| - 0.13 11.7 0.0 0.34 10.4 0.0 1.7 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term Radical_SAM PF04055.16 gi|156936800|ref|YP_001434596.1| - 5.8e-21 75.3 0.0 2e-20 73.6 0.0 1.7 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|156936800|ref|YP_001434596.1| - 6.2e-09 35.9 0.0 2e-08 34.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|156936800|ref|YP_001434596.1| - 6.9e-07 29.4 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3136 PF11334.3 gi|156936800|ref|YP_001434596.1| - 0.098 12.0 1.5 2.6 7.5 0.0 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3136) DUF3016 PF11454.3 gi|156936801|ref|YP_001434597.1| - 0.059 12.9 0.1 5.6 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3016) Topoisom_bac PF01131.15 gi|156936802|ref|YP_001434598.1| - 4.3e-112 374.8 0.0 5.3e-112 374.5 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|156936802|ref|YP_001434598.1| - 3.1e-09 36.6 0.0 7.8e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Toprim domain DUF4237 PF14021.1 gi|156936802|ref|YP_001434598.1| - 0.065 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4237) WD40 PF00400.27 gi|156936803|ref|YP_001434599.1| - 0.0042 16.9 3.6 1.4 8.9 0.3 3.5 3 0 0 3 3 3 2 WD domain, G-beta repeat PQQ_3 PF13570.1 gi|156936803|ref|YP_001434599.1| - 0.013 15.7 10.9 42 4.5 1.6 6.0 4 1 1 5 5 5 0 PQQ-like domain Cytochrom_D1 PF02239.11 gi|156936803|ref|YP_001434599.1| - 0.038 12.2 1.2 1.6 6.9 0.0 2.8 3 0 0 3 3 3 0 Cytochrome D1 heme domain PQQ PF01011.16 gi|156936803|ref|YP_001434599.1| - 0.16 11.5 1.1 26 4.5 0.0 3.9 4 0 0 4 4 4 0 PQQ enzyme repeat Beta-Casp PF10996.3 gi|156936804|ref|YP_001434600.1| - 3.6e-33 114.2 0.0 1.1e-32 112.6 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|156936804|ref|YP_001434600.1| - 7.8e-20 71.3 0.4 1.6e-19 70.3 0.3 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|156936804|ref|YP_001434600.1| - 4.6e-12 45.5 0.0 1.2e-11 44.2 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|156936804|ref|YP_001434600.1| - 2.1e-09 37.1 0.0 4.6e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|156936804|ref|YP_001434600.1| - 8.7e-05 22.2 0.0 0.0002 21.1 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|156936804|ref|YP_001434600.1| - 0.0041 16.6 2.6 0.0077 15.7 0.3 2.5 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|156936804|ref|YP_001434600.1| - 0.0093 15.5 0.5 0.041 13.5 0.0 2.3 2 0 0 2 2 2 1 KH domain DRMBL PF07522.9 gi|156936804|ref|YP_001434600.1| - 0.025 14.5 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase MoCF_biosynth PF00994.19 gi|156936806|ref|YP_001434602.1| - 8.5e-29 99.8 0.1 9.9e-29 99.6 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Archease PF01951.11 gi|156936807|ref|YP_001434603.1| - 1.3e-46 158.0 0.8 1.4e-46 157.8 0.5 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|156936807|ref|YP_001434603.1| - 0.0027 17.3 0.3 0.04 13.5 0.0 2.6 3 0 0 3 3 3 1 Uncharacterised protein family (UPF0150) Hat1_N PF10394.4 gi|156936807|ref|YP_001434603.1| - 0.019 15.0 0.2 0.022 14.8 0.1 1.1 1 0 0 1 1 1 0 Histone acetyl transferase HAT1 N-terminus GrpE PF01025.14 gi|156936807|ref|YP_001434603.1| - 0.019 14.5 0.4 0.023 14.2 0.3 1.1 1 0 0 1 1 1 0 GrpE DEAD_2 PF06733.10 gi|156936807|ref|YP_001434603.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 DEAD_2 GatB_N PF02934.10 gi|156936808|ref|YP_001434604.1| - 1.9e-108 361.7 0.0 2.7e-108 361.2 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|156936808|ref|YP_001434604.1| - 9.9e-38 129.1 0.0 1.8e-37 128.3 0.0 1.4 1 0 0 1 1 1 1 GatB domain HTH_5 PF01022.15 gi|156936809|ref|YP_001434605.1| - 5.8e-10 38.6 0.0 9.8e-10 37.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|156936809|ref|YP_001434605.1| - 6.2e-10 38.9 0.1 8.2e-10 38.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|156936809|ref|YP_001434605.1| - 1.4e-09 37.1 0.0 3.9e-09 35.7 0.0 1.8 2 1 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|156936809|ref|YP_001434605.1| - 4.8e-07 29.3 0.0 9.2e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|156936809|ref|YP_001434605.1| - 9.8e-07 28.4 0.0 2.4e-06 27.2 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|156936809|ref|YP_001434605.1| - 3.4e-06 26.5 0.0 8e-06 25.3 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|156936809|ref|YP_001434605.1| - 2.6e-05 23.7 0.0 4.8e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|156936809|ref|YP_001434605.1| - 4.1e-05 23.4 0.0 9.2e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|156936809|ref|YP_001434605.1| - 4.2e-05 23.1 0.1 8.8e-05 22.1 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|156936809|ref|YP_001434605.1| - 6.4e-05 22.6 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.7 gi|156936809|ref|YP_001434605.1| - 0.00011 21.7 0.0 0.00021 20.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.14 gi|156936809|ref|YP_001434605.1| - 0.00017 21.2 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|156936809|ref|YP_001434605.1| - 0.00035 20.1 0.0 0.00062 19.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HxlR PF01638.12 gi|156936809|ref|YP_001434605.1| - 0.00041 19.9 0.1 0.00058 19.4 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|156936809|ref|YP_001434605.1| - 0.00074 19.7 0.0 0.0014 18.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|156936809|ref|YP_001434605.1| - 0.0026 17.7 0.0 0.0062 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|156936809|ref|YP_001434605.1| - 0.0026 17.9 0.0 0.0045 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|156936809|ref|YP_001434605.1| - 0.0046 17.0 0.0 0.0075 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_36 PF13730.1 gi|156936809|ref|YP_001434605.1| - 0.0071 16.4 0.1 0.015 15.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|156936809|ref|YP_001434605.1| - 0.011 15.5 0.1 0.02 14.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_Mga PF08280.6 gi|156936809|ref|YP_001434605.1| - 0.012 15.3 0.1 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_1 PF00126.22 gi|156936809|ref|YP_001434605.1| - 0.015 15.0 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.15 gi|156936809|ref|YP_001434605.1| - 0.021 14.9 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|156936809|ref|YP_001434605.1| - 0.023 14.2 0.2 0.059 12.8 0.0 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit SgrR_N PF12793.2 gi|156936809|ref|YP_001434605.1| - 0.025 14.5 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_AsnC-type PF13404.1 gi|156936809|ref|YP_001434605.1| - 0.034 13.6 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_12 PF08461.5 gi|156936809|ref|YP_001434605.1| - 0.036 13.7 0.0 0.068 12.9 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain FUR PF01475.14 gi|156936809|ref|YP_001434605.1| - 0.078 12.9 0.1 0.17 11.8 0.1 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family DDRGK PF09756.4 gi|156936809|ref|YP_001434605.1| - 0.089 12.1 0.8 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 DDRGK domain Sigma70_r4_2 PF08281.7 gi|156936809|ref|YP_001434605.1| - 0.089 12.2 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2513 PF10711.4 gi|156936809|ref|YP_001434605.1| - 0.091 12.8 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) DUF4530 PF15039.1 gi|156936809|ref|YP_001434605.1| - 0.092 12.6 1.4 0.13 12.1 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) Crp PF00325.15 gi|156936809|ref|YP_001434605.1| - 0.094 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family DUF2250 PF10007.4 gi|156936809|ref|YP_001434605.1| - 0.11 12.4 0.5 0.4 10.6 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) KorB PF08535.5 gi|156936809|ref|YP_001434605.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 KorB domain SpoIIID PF12116.3 gi|156936809|ref|YP_001434605.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 1 0 1 1 1 0 Stage III sporulation protein D HTH_38 PF13936.1 gi|156936809|ref|YP_001434605.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain CarboxypepD_reg PF13620.1 gi|156936812|ref|YP_001434608.1| - 1.4e-30 105.1 11.7 3.8e-08 33.2 0.1 5.8 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|156936812|ref|YP_001434608.1| - 2.6e-16 59.4 6.2 9.2e-05 22.4 0.2 5.1 4 0 0 4 4 4 4 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|156936812|ref|YP_001434608.1| - 8.9e-11 41.4 6.6 4.9e-05 23.0 0.1 5.9 5 0 0 5 5 5 2 PEGA domain MG1 PF11974.3 gi|156936812|ref|YP_001434608.1| - 1.6e-06 28.5 1.4 0.0076 16.7 0.1 4.1 3 0 0 3 3 3 1 Alpha-2-macroglobulin MG1 domain Transthyretin PF00576.16 gi|156936812|ref|YP_001434608.1| - 0.00017 21.4 0.2 0.34 10.8 0.0 3.4 3 0 0 3 3 3 2 HIUase/Transthyretin family FlgD_ig PF13860.1 gi|156936812|ref|YP_001434608.1| - 0.00059 19.5 0.0 0.84 9.4 0.0 4.9 5 1 0 5 5 5 1 FlgD Ig-like domain phage_tail_N PF08400.5 gi|156936812|ref|YP_001434608.1| - 0.0019 17.8 0.3 0.31 10.7 0.1 2.8 2 0 0 2 2 2 1 Prophage tail fibre N-terminal DUF1533 PF07550.6 gi|156936812|ref|YP_001434608.1| - 0.0045 16.9 0.7 2.7 8.0 0.0 4.7 5 0 0 5 5 5 1 Protein of unknown function (DUF1533) DUF4249 PF14054.1 gi|156936812|ref|YP_001434608.1| - 0.0066 15.8 6.1 0.93 8.7 0.1 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4249) Pectate_lyase_3 PF12708.2 gi|156936812|ref|YP_001434608.1| - 0.24 11.4 1.9 2.8 8.0 0.0 3.0 4 0 0 4 4 4 0 Pectate lyase superfamily protein DHQ_synthase PF01761.15 gi|156936813|ref|YP_001434609.1| - 7.8e-82 274.0 0.0 9.8e-82 273.7 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH PF00465.14 gi|156936813|ref|YP_001434609.1| - 2.1e-06 26.6 0.0 0.00049 18.8 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|156936813|ref|YP_001434609.1| - 6.7e-06 25.5 0.0 0.00013 21.4 0.0 2.0 1 1 1 2 2 2 1 Iron-containing alcohol dehydrogenase Dsl1_N PF11988.3 gi|156936813|ref|YP_001434609.1| - 0.01 14.7 0.3 0.02 13.7 0.0 1.5 2 0 0 2 2 2 1 Retrograde transport protein Dsl1 N terminal ASCH PF04266.9 gi|156936814|ref|YP_001434610.1| - 7.6e-12 45.5 0.1 1.1e-11 45.0 0.1 1.2 1 0 0 1 1 1 1 ASCH domain DUF3850 PF12961.2 gi|156936814|ref|YP_001434610.1| - 0.027 14.4 0.4 0.046 13.6 0.3 1.4 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3850) S4_2 PF13275.1 gi|156936814|ref|YP_001434610.1| - 0.069 12.7 0.2 0.14 11.8 0.2 1.4 1 0 0 1 1 1 0 S4 domain UPF0047 PF01894.12 gi|156936815|ref|YP_001434611.1| - 8.1e-40 135.3 0.0 9.3e-40 135.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.14 gi|156936816|ref|YP_001434612.1| - 5.3e-25 87.9 0.0 7.3e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|156936816|ref|YP_001434612.1| - 3.2e-05 23.6 0.0 6.9e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribosomal_S2 PF00318.15 gi|156936816|ref|YP_001434612.1| - 0.0025 17.0 0.0 0.02 14.1 0.0 2.0 2 0 0 2 2 2 1 Ribosomal protein S2 PUA PF01472.15 gi|156936817|ref|YP_001434613.1| - 3.5e-24 84.3 0.1 3.5e-24 84.3 0.1 1.5 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.5 gi|156936817|ref|YP_001434613.1| - 6.4e-05 22.6 0.0 0.00016 21.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) SH3_6 PF12913.2 gi|156936819|ref|YP_001434615.1| - 0.055 12.7 0.1 0.086 12.0 0.1 1.3 1 0 0 1 1 1 0 SH3 domain of the SH3b1 type AFOR_C PF01314.13 gi|156936820|ref|YP_001434616.1| - 8.6e-99 330.7 0.0 1.1e-98 330.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|156936820|ref|YP_001434616.1| - 5e-69 231.6 0.2 9e-69 230.8 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Stk19 PF10494.4 gi|156936821|ref|YP_001434617.1| - 0.0038 16.6 1.5 0.0074 15.7 0.3 1.7 1 1 1 2 2 2 1 Serine-threonine protein kinase 19 DUF162 PF02589.10 gi|156936821|ref|YP_001434617.1| - 0.15 11.5 0.5 0.19 11.2 0.4 1.2 1 0 0 1 1 1 0 Uncharacterised ACR, YkgG family COG1556 GatB_Yqey PF02637.13 gi|156936821|ref|YP_001434617.1| - 8.6 6.0 11.0 0.26 10.9 2.0 2.2 2 1 0 2 2 2 0 GatB domain DUF1886 PF09171.5 gi|156936822|ref|YP_001434618.1| - 0.064 12.2 0.2 0.07 12.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) PRA-PH PF01503.12 gi|156936824|ref|YP_001434620.1| - 3.4e-15 56.0 0.0 3.8e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|156936824|ref|YP_001434620.1| - 0.019 14.8 0.1 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 MazG nucleotide pyrophosphohydrolase domain E1_dh PF00676.15 gi|156936824|ref|YP_001434620.1| - 0.03 13.0 0.0 0.036 12.7 0.0 1.0 1 0 0 1 1 1 0 Dehydrogenase E1 component GATase PF00117.23 gi|156936825|ref|YP_001434621.1| - 6.8e-25 87.6 0.0 7.7e-25 87.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|156936825|ref|YP_001434621.1| - 5.3e-06 26.1 0.0 0.0021 17.7 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|156936825|ref|YP_001434621.1| - 0.00038 20.0 0.5 0.00062 19.4 0.1 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|156936825|ref|YP_001434621.1| - 0.09 11.6 0.2 0.74 8.6 0.2 2.3 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Cas_DxTHG PF09455.5 gi|156936826|ref|YP_001434622.1| - 0.049 12.7 0.1 0.061 12.4 0.1 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family ASCH PF04266.9 gi|156936828|ref|YP_001434624.1| - 0.0003 21.1 0.0 0.00056 20.2 0.0 1.4 1 1 0 1 1 1 1 ASCH domain AAA_25 PF13481.1 gi|156936829|ref|YP_001434625.1| - 0.0037 16.6 0.0 0.087 12.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|156936829|ref|YP_001434625.1| - 0.029 14.5 0.0 0.2 11.7 0.0 2.4 3 1 0 3 3 3 0 AAA domain HAUS6_N PF14661.1 gi|156936829|ref|YP_001434625.1| - 0.087 12.1 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus NRDD PF13597.1 gi|156936831|ref|YP_001434627.1| - 1.1e-144 482.5 0.0 1.4e-144 482.2 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Gpi1 PF05024.10 gi|156936832|ref|YP_001434628.1| - 0.011 15.4 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 N-acetylglucosaminyl transferase component (Gpi1) LexA_DNA_bind PF01726.11 gi|156936832|ref|YP_001434628.1| - 0.017 14.6 0.1 0.95 9.0 0.0 2.4 2 1 0 2 2 2 0 LexA DNA binding domain ALIX_LYPXL_bnd PF13949.1 gi|156936832|ref|YP_001434628.1| - 0.05 12.5 0.9 0.078 11.9 0.6 1.5 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF3294 PF07957.6 gi|156936832|ref|YP_001434628.1| - 0.068 12.6 1.4 0.1 12.0 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3294) HTH_32 PF13565.1 gi|156936832|ref|YP_001434628.1| - 0.15 12.8 0.6 2.8 8.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Sigma54_CBD PF04963.8 gi|156936832|ref|YP_001434628.1| - 0.17 11.3 1.0 1.1 8.6 0.2 1.9 1 1 1 2 2 2 0 Sigma-54 factor, core binding domain DUF904 PF06005.7 gi|156936832|ref|YP_001434628.1| - 0.52 10.6 5.4 0.42 10.9 0.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF904) TBPIP PF07106.8 gi|156936832|ref|YP_001434628.1| - 0.59 9.6 3.1 0.38 10.2 0.4 1.8 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CorA PF01544.13 gi|156936832|ref|YP_001434628.1| - 0.94 8.4 3.6 1.3 7.9 2.5 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Cep57_MT_bd PF06657.8 gi|156936832|ref|YP_001434628.1| - 7.6 6.5 8.4 9.8 6.1 0.2 2.7 2 2 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 ABC_tran PF00005.22 gi|156936833|ref|YP_001434629.1| - 2.2e-39 134.8 0.0 9.4e-19 68.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|156936833|ref|YP_001434629.1| - 2.9e-15 57.0 2.4 0.001 19.1 0.1 4.2 3 1 1 4 4 4 3 AAA domain RLI PF04068.10 gi|156936833|ref|YP_001434629.1| - 4.9e-13 48.4 3.4 4.9e-13 48.4 2.3 2.1 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.14 gi|156936833|ref|YP_001434629.1| - 5.1e-12 45.5 4.9 0.002 17.3 0.7 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|156936833|ref|YP_001434629.1| - 7.9e-08 31.7 0.2 0.0039 16.6 0.1 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|156936833|ref|YP_001434629.1| - 4.3e-07 29.3 0.0 0.42 9.6 0.0 4.0 4 0 0 4 4 4 2 AAA ATPase domain AAA_23 PF13476.1 gi|156936833|ref|YP_001434629.1| - 6e-07 29.9 0.0 0.011 16.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Fer4 PF00037.22 gi|156936833|ref|YP_001434629.1| - 5.9e-06 25.6 3.2 5.9e-06 25.6 2.2 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156936833|ref|YP_001434629.1| - 5.4e-05 23.4 5.3 0.00011 22.5 3.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156936833|ref|YP_001434629.1| - 7.2e-05 22.4 12.4 0.0033 17.2 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain SbcCD_C PF13558.1 gi|156936833|ref|YP_001434629.1| - 8e-05 22.4 0.6 0.16 11.9 0.1 3.3 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|156936833|ref|YP_001434629.1| - 9.4e-05 21.8 0.2 0.06 12.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|156936833|ref|YP_001434629.1| - 0.00016 22.4 5.5 0.31 11.8 0.4 3.8 3 1 0 3 3 3 1 AAA domain DUF258 PF03193.11 gi|156936833|ref|YP_001434629.1| - 0.0011 18.1 0.0 0.55 9.3 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Fer4_16 PF13484.1 gi|156936833|ref|YP_001434629.1| - 0.002 18.8 4.0 0.0021 18.7 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_22 PF13401.1 gi|156936833|ref|YP_001434629.1| - 0.0032 17.6 0.5 2.2 8.4 0.0 2.9 2 1 0 2 2 2 1 AAA domain Fer4_10 PF13237.1 gi|156936833|ref|YP_001434629.1| - 0.0039 16.9 11.3 0.0073 16.0 1.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156936833|ref|YP_001434629.1| - 0.0051 16.6 8.5 0.0083 15.9 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain MobB PF03205.9 gi|156936833|ref|YP_001434629.1| - 0.0071 16.0 0.2 0.31 10.7 0.0 2.7 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_9 PF13187.1 gi|156936833|ref|YP_001434629.1| - 0.0079 16.4 8.4 0.0084 16.3 2.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|156936833|ref|YP_001434629.1| - 0.0081 15.6 1.0 1.2 8.4 0.0 2.5 2 0 0 2 2 2 1 AAA-like domain Rad17 PF03215.10 gi|156936833|ref|YP_001434629.1| - 0.0084 14.8 0.0 0.86 8.2 0.0 2.5 3 0 0 3 3 2 1 Rad17 cell cycle checkpoint protein ArgK PF03308.11 gi|156936833|ref|YP_001434629.1| - 0.0094 14.7 1.1 1.6 7.4 0.0 2.2 2 0 0 2 2 2 1 ArgK protein Miro PF08477.8 gi|156936833|ref|YP_001434629.1| - 0.017 15.5 0.1 2.6 8.5 0.0 2.7 3 0 0 3 3 2 0 Miro-like protein AAA_16 PF13191.1 gi|156936833|ref|YP_001434629.1| - 0.019 14.9 1.9 0.68 9.8 0.0 2.6 2 1 0 2 2 2 0 AAA ATPase domain Fer4_17 PF13534.1 gi|156936833|ref|YP_001434629.1| - 0.019 15.3 2.7 0.089 13.1 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA_18 PF13238.1 gi|156936833|ref|YP_001434629.1| - 0.028 14.7 0.1 18 5.6 0.0 3.1 3 0 0 3 3 2 0 AAA domain RNA_helicase PF00910.17 gi|156936833|ref|YP_001434629.1| - 0.03 14.4 0.0 2 8.6 0.0 2.5 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.7 gi|156936833|ref|YP_001434629.1| - 0.04 13.5 0.2 1.6 8.4 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|156936833|ref|YP_001434629.1| - 0.041 13.8 1.7 5.2 7.0 0.2 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_2 PF12797.2 gi|156936833|ref|YP_001434629.1| - 0.051 13.5 13.1 0.038 13.9 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA PF00004.24 gi|156936833|ref|YP_001434629.1| - 0.056 13.6 0.0 1.1 9.4 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|156936833|ref|YP_001434629.1| - 0.063 12.8 0.0 1.7 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|156936833|ref|YP_001434629.1| - 0.074 12.7 0.7 1.2 8.8 0.0 2.5 2 0 0 2 2 2 0 NTPase Fer4_11 PF13247.1 gi|156936833|ref|YP_001434629.1| - 0.086 12.7 2.3 0.16 11.8 1.6 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_14 PF13173.1 gi|156936833|ref|YP_001434629.1| - 0.09 12.6 0.1 3.3 7.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|156936833|ref|YP_001434629.1| - 0.17 11.7 1.8 12 5.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|156936833|ref|YP_001434629.1| - 0.17 11.7 0.0 8.3 6.2 0.0 2.9 3 0 0 3 3 2 0 AAA domain AAA_13 PF13166.1 gi|156936833|ref|YP_001434629.1| - 0.2 10.0 0.0 2 6.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|156936833|ref|YP_001434629.1| - 0.2 11.0 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 MutS domain V Fer4_8 PF13183.1 gi|156936833|ref|YP_001434629.1| - 0.36 10.8 4.6 0.47 10.5 1.2 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156936833|ref|YP_001434629.1| - 1 9.8 11.7 0.46 10.9 1.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|156936833|ref|YP_001434629.1| - 2.3 8.9 12.8 0.07 13.7 2.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|156936833|ref|YP_001434629.1| - 7.3 7.0 9.9 0.39 11.1 2.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Cren7 PF11520.3 gi|156936834|ref|YP_001434630.1| - 2.1e-24 84.9 1.8 2.2e-24 84.8 1.3 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DNA_ligase_ZBD PF03119.11 gi|156936834|ref|YP_001434630.1| - 0.004 16.8 1.0 0.28 10.9 0.1 2.1 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DUF1936 PF09151.5 gi|156936834|ref|YP_001434630.1| - 0.0063 16.0 3.1 0.05 13.1 2.2 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF1936) zinc_ribbon_2 PF13240.1 gi|156936834|ref|YP_001434630.1| - 0.017 14.5 1.2 0.017 14.5 0.8 1.9 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|156936834|ref|YP_001434630.1| - 0.017 14.8 1.5 0.017 14.8 0.3 1.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|156936834|ref|YP_001434630.1| - 0.059 12.5 0.6 0.059 12.5 0.4 2.0 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|156936834|ref|YP_001434630.1| - 0.15 11.7 0.5 0.15 11.7 0.4 2.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|156936834|ref|YP_001434630.1| - 0.27 11.0 1.1 0.5 10.2 0.7 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|156936834|ref|YP_001434630.1| - 0.32 11.1 7.4 2.6 8.2 1.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-tcix PF14952.1 gi|156936834|ref|YP_001434630.1| - 0.49 9.7 2.1 0.45 9.9 0.4 1.7 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding AdoHcyase PF05221.12 gi|156936835|ref|YP_001434631.1| - 1.4e-74 250.4 0.1 1.7e-74 250.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|156936835|ref|YP_001434631.1| - 1.4e-60 203.8 1.1 2e-60 203.3 0.3 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|156936835|ref|YP_001434631.1| - 4.6e-10 38.9 0.8 1e-09 37.8 0.3 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|156936835|ref|YP_001434631.1| - 8.9e-08 31.6 0.3 1.9e-07 30.6 0.2 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|156936835|ref|YP_001434631.1| - 0.001 19.0 0.2 0.0059 16.5 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain THF_DHG_CYH_C PF02882.14 gi|156936835|ref|YP_001434631.1| - 0.0039 16.2 1.0 0.023 13.7 0.7 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Oxidored_nitro PF00148.14 gi|156936835|ref|YP_001434631.1| - 0.031 12.9 0.7 1.8 7.1 0.0 2.2 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase AlaDh_PNT_C PF01262.16 gi|156936835|ref|YP_001434631.1| - 0.045 13.3 0.7 0.13 11.8 0.5 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|156936835|ref|YP_001434631.1| - 0.14 11.7 1.6 0.21 11.2 0.5 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PfkB PF00294.19 gi|156936836|ref|YP_001434632.1| - 1.9e-39 135.6 0.0 2.8e-39 135.0 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF4265 PF14085.1 gi|156936836|ref|YP_001434632.1| - 0.021 14.5 0.0 0.05 13.3 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) NAD_binding_1 PF00175.16 gi|156936837|ref|YP_001434633.1| - 9.2e-07 29.4 0.4 0.00017 22.1 0.2 2.3 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|156936837|ref|YP_001434633.1| - 5.8e-06 25.6 1.5 1.1e-05 24.8 1.0 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B PyrI PF01948.13 gi|156936838|ref|YP_001434634.1| - 9.4e-36 121.7 0.2 1.4e-35 121.1 0.2 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|156936838|ref|YP_001434634.1| - 4.8e-21 73.9 1.5 7.1e-21 73.3 1.1 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-BED PF02892.10 gi|156936838|ref|YP_001434634.1| - 0.044 13.5 0.1 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 BED zinc finger OTCace_N PF02729.16 gi|156936839|ref|YP_001434635.1| - 4e-40 136.7 0.0 6.4e-40 136.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|156936839|ref|YP_001434635.1| - 2.8e-33 115.0 0.0 4.5e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fcf1 PF04900.7 gi|156936841|ref|YP_001434637.1| - 3.1e-07 30.4 0.1 6.3e-07 29.4 0.0 1.4 2 0 0 2 2 2 1 Fcf1 PIN_4 PF13638.1 gi|156936841|ref|YP_001434637.1| - 0.12 12.4 0.0 0.62 10.1 0.0 2.1 1 1 0 1 1 1 0 PIN domain Cytochrom_C_asm PF01578.15 gi|156936842|ref|YP_001434638.1| - 3.9e-25 88.6 8.5 3.9e-25 88.6 5.9 2.7 2 1 0 2 2 2 1 Cytochrome C assembly protein BCHF PF07284.6 gi|156936842|ref|YP_001434638.1| - 0.3 10.9 13.9 0.07 12.9 6.0 2.4 1 1 1 2 2 2 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) ORMDL PF04061.9 gi|156936842|ref|YP_001434638.1| - 0.4 10.2 5.7 0.17 11.4 2.0 1.9 2 0 0 2 2 2 0 ORMDL family PepSY_2 PF13670.1 gi|156936842|ref|YP_001434638.1| - 7.8 6.4 7.8 1.2 9.0 1.3 2.6 3 1 0 3 3 3 0 Peptidase propeptide and YPEB domain CitG PF01874.11 gi|156936845|ref|YP_001434641.1| - 4e-15 55.7 0.1 7.2e-14 51.6 0.1 2.5 1 1 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Methyltrans_SAM PF10672.4 gi|156936846|ref|YP_001434642.1| - 1.4e-17 63.4 0.0 1.9e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|156936846|ref|YP_001434642.1| - 9.8e-11 41.3 0.0 1.7e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|156936846|ref|YP_001434642.1| - 2.1e-09 37.2 0.2 3.9e-09 36.3 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|156936846|ref|YP_001434642.1| - 4.8e-06 26.5 0.0 9.9e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156936846|ref|YP_001434642.1| - 0.00076 18.8 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|156936846|ref|YP_001434642.1| - 0.002 17.2 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.12 gi|156936846|ref|YP_001434642.1| - 0.1 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase CDP-OH_P_transf PF01066.16 gi|156936847|ref|YP_001434643.1| - 1.3e-18 67.1 1.9 1.3e-18 67.1 1.3 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF1212 PF06738.7 gi|156936847|ref|YP_001434643.1| - 8.4 5.8 9.4 0.85 9.0 1.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1212) Helicase_C_2 PF13307.1 gi|156936848|ref|YP_001434644.1| - 3e-22 79.3 0.0 5.1e-22 78.6 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|156936848|ref|YP_001434644.1| - 1.4e-13 50.6 0.0 1.1e-11 44.4 0.0 2.4 2 0 0 2 2 2 1 DEAD_2 ResIII PF04851.10 gi|156936848|ref|YP_001434644.1| - 4e-09 36.5 0.0 3.9e-07 30.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|156936848|ref|YP_001434644.1| - 3.4e-05 23.3 0.0 0.069 12.6 0.0 2.8 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|156936848|ref|YP_001434644.1| - 0.00061 19.4 0.1 0.0031 17.2 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|156936848|ref|YP_001434644.1| - 0.0032 17.6 0.0 4 7.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain SNF2_N PF00176.18 gi|156936848|ref|YP_001434644.1| - 0.014 14.2 0.0 0.07 11.9 0.0 1.9 2 0 0 2 2 2 0 SNF2 family N-terminal domain Zot PF05707.7 gi|156936848|ref|YP_001434644.1| - 0.025 14.0 0.0 2.8 7.3 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|156936848|ref|YP_001434644.1| - 0.035 13.3 0.1 1.8 7.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.4 gi|156936848|ref|YP_001434644.1| - 0.26 10.1 0.2 8.5 5.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF432 PF04254.8 gi|156936850|ref|YP_001434646.1| - 9.5e-19 67.5 0.3 1.9e-17 63.3 0.2 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|156936851|ref|YP_001434647.1| - 4.6e-47 160.0 2.0 6.3e-47 159.5 1.4 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel RimK PF08443.6 gi|156936852|ref|YP_001434648.1| - 6.9e-51 172.4 0.0 8.7e-51 172.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|156936852|ref|YP_001434648.1| - 5.3e-16 58.8 0.0 7.7e-16 58.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|156936852|ref|YP_001434648.1| - 9.7e-14 50.8 0.0 1.3e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|156936852|ref|YP_001434648.1| - 1.8e-11 43.5 0.0 2.6e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.12 gi|156936852|ref|YP_001434648.1| - 1.8e-11 43.7 0.0 1.1e-10 41.1 0.0 2.1 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|156936852|ref|YP_001434648.1| - 1.4e-09 38.0 0.0 1.9e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|156936852|ref|YP_001434648.1| - 0.00043 19.6 0.0 0.0009 18.6 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.6 gi|156936852|ref|YP_001434648.1| - 0.00072 18.6 0.0 0.11 11.4 0.0 2.3 1 1 1 2 2 2 2 Inositol 1, 3, 4-trisphosphate 5/6-kinase ATP-grasp_5 PF13549.1 gi|156936852|ref|YP_001434648.1| - 0.01 15.0 0.0 0.084 12.0 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain Hjc PF01870.13 gi|156936852|ref|YP_001434648.1| - 0.073 12.6 0.3 0.8 9.3 0.0 2.4 3 0 0 3 3 3 0 Archaeal holliday junction resolvase (hjc) FKBP_C PF00254.23 gi|156936853|ref|YP_001434649.1| - 6.6e-18 64.5 0.2 1.2e-17 63.6 0.1 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase KH_5 PF13184.1 gi|156936854|ref|YP_001434650.1| - 3.7e-08 33.0 1.1 7.4e-08 32.0 0.7 1.5 1 0 0 1 1 1 1 NusA-like KH domain Fib_alpha PF08702.5 gi|156936854|ref|YP_001434650.1| - 0.072 13.2 0.3 0.11 12.6 0.2 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF1697 PF08002.6 gi|156936854|ref|YP_001434650.1| - 0.075 13.0 0.3 0.39 10.7 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1697) DUF1293 PF06950.6 gi|156936854|ref|YP_001434650.1| - 0.12 12.2 1.0 2.2 8.2 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1293) Metallophos_2 PF12850.2 gi|156936855|ref|YP_001434651.1| - 5.8e-15 55.4 0.0 8.3e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|156936855|ref|YP_001434651.1| - 5.4e-07 29.2 0.1 2e-06 27.3 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Toprim_4 PF13662.1 gi|156936856|ref|YP_001434652.1| - 1.7e-08 34.3 0.8 2.6e-07 30.5 0.2 2.8 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|156936856|ref|YP_001434652.1| - 0.023 14.9 0.1 0.11 12.7 0.0 2.3 2 0 0 2 2 2 0 Toprim-like RasGAP PF00616.14 gi|156936856|ref|YP_001434652.1| - 0.1 12.2 3.0 4.6 6.8 0.0 2.2 2 0 0 2 2 2 0 GTPase-activator protein for Ras-like GTPase Toprim PF01751.17 gi|156936856|ref|YP_001434652.1| - 0.21 11.6 8.5 0.17 11.8 3.1 2.8 2 1 0 2 2 2 0 Toprim domain GTPase_Cys_C PF12631.2 gi|156936856|ref|YP_001434652.1| - 0.27 11.6 1.4 23 5.5 0.0 3.3 3 0 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE OTCace_N PF02729.16 gi|156936856|ref|YP_001434652.1| - 0.39 10.3 2.0 12 5.5 0.1 2.5 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RNA_pol_Rpb1_5 PF04998.12 gi|156936856|ref|YP_001434652.1| - 0.67 9.1 3.5 1.2 8.3 2.4 1.4 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 5 Iron_permease PF04120.7 gi|156936856|ref|YP_001434652.1| - 1 8.9 7.3 0.47 10.0 3.0 1.9 2 0 0 2 2 2 0 Low affinity iron permease SPATIAL PF15256.1 gi|156936856|ref|YP_001434652.1| - 1.2 9.1 5.8 0.31 11.0 1.9 1.5 2 0 0 2 2 2 0 SPATIAL RbsD_FucU PF05025.8 gi|156936856|ref|YP_001434652.1| - 6.7 7.0 10.0 0.42 10.9 0.3 2.8 2 1 1 3 3 3 0 RbsD / FucU transport protein family DNA_pol_B PF00136.16 gi|156936857|ref|YP_001434653.1| - 3.7e-98 329.3 0.1 5.4e-98 328.7 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|156936857|ref|YP_001434653.1| - 2.4e-39 135.0 0.0 1.4e-37 129.2 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|156936857|ref|YP_001434653.1| - 3.1e-10 40.0 0.1 1.2e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|156936857|ref|YP_001434653.1| - 0.0008 19.0 0.1 0.0031 17.0 0.1 1.9 1 1 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF2976 PF11190.3 gi|156936858|ref|YP_001434654.1| - 0.15 11.6 2.2 0.2 11.1 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) Ribosomal_S10 PF00338.17 gi|156936860|ref|YP_001434656.1| - 5.9e-31 106.1 0.3 6.6e-31 106.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Pyr_redox_2 PF07992.9 gi|156936861|ref|YP_001434657.1| - 3.3e-17 63.0 2.6 2.2e-16 60.3 1.8 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|156936861|ref|YP_001434657.1| - 9.1e-13 48.4 4.5 1.3e-08 35.1 0.1 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|156936861|ref|YP_001434657.1| - 8.3e-10 39.0 0.4 0.0013 18.8 0.1 3.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|156936861|ref|YP_001434657.1| - 1.1e-06 28.0 1.1 0.023 13.7 0.1 2.4 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|156936861|ref|YP_001434657.1| - 1.6e-06 28.0 5.4 0.0023 17.7 0.1 4.0 4 0 0 4 4 4 1 FAD-NAD(P)-binding DAO PF01266.19 gi|156936861|ref|YP_001434657.1| - 1.3e-05 24.2 8.1 0.098 11.5 0.0 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|156936861|ref|YP_001434657.1| - 0.00017 21.5 0.3 0.45 10.5 0.2 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|156936861|ref|YP_001434657.1| - 0.00018 20.5 0.4 0.00042 19.3 0.0 1.7 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|156936861|ref|YP_001434657.1| - 0.00082 18.3 6.3 0.76 8.6 0.1 3.9 3 1 1 4 4 4 2 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|156936861|ref|YP_001434657.1| - 0.0039 16.2 1.6 6.2 5.7 0.0 3.1 3 0 0 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|156936861|ref|YP_001434657.1| - 0.011 15.3 6.0 0.042 13.4 0.1 2.9 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|156936861|ref|YP_001434657.1| - 0.02 13.7 11.8 1.9 7.2 0.8 4.0 2 1 2 4 4 4 0 Glucose inhibited division protein A OTCace PF00185.19 gi|156936861|ref|YP_001434657.1| - 0.024 14.5 0.0 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FAD_binding_2 PF00890.19 gi|156936861|ref|YP_001434657.1| - 0.036 12.9 3.5 0.11 11.3 0.4 2.2 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.9 gi|156936861|ref|YP_001434657.1| - 0.053 11.9 6.5 1.8 6.9 0.0 3.4 4 0 0 4 4 4 0 HI0933-like protein CPSase_L_chain PF00289.17 gi|156936861|ref|YP_001434657.1| - 0.067 13.3 0.3 0.16 12.1 0.1 1.9 2 1 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|156936861|ref|YP_001434657.1| - 0.078 12.3 0.7 8.7 5.6 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|156936861|ref|YP_001434657.1| - 0.21 11.2 1.9 12 5.4 0.0 2.4 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Nol1_Nop2_Fmu PF01189.12 gi|156936862|ref|YP_001434658.1| - 1.9e-62 211.2 0.0 2.2e-62 210.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|156936862|ref|YP_001434658.1| - 4.1e-07 29.6 0.0 6.5e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156936862|ref|YP_001434658.1| - 0.00017 21.6 0.0 0.00028 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156936862|ref|YP_001434658.1| - 0.0015 19.0 0.0 0.0026 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|156936862|ref|YP_001434658.1| - 0.0041 16.6 0.0 0.013 15.0 0.0 1.7 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|156936862|ref|YP_001434658.1| - 0.018 14.4 0.0 0.038 13.3 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain FtsJ PF01728.14 gi|156936862|ref|YP_001434658.1| - 0.026 14.4 0.0 0.055 13.4 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase TauE PF01925.14 gi|156936864|ref|YP_001434660.1| - 4.9e-43 147.3 42.9 5.5e-43 147.1 29.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE BTP PF05232.7 gi|156936864|ref|YP_001434660.1| - 5.5 6.8 11.0 0.11 12.3 0.7 3.0 3 0 0 3 3 3 0 Bacterial Transmembrane Pair family Fumarate_red_D PF02313.12 gi|156936864|ref|YP_001434660.1| - 8.1 6.3 10.6 0.28 11.0 1.0 2.8 2 1 1 3 3 3 0 Fumarate reductase subunit D Nop PF01798.13 gi|156936865|ref|YP_001434661.1| - 2.2e-55 186.1 0.1 4.4e-55 185.0 0.1 1.5 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|156936865|ref|YP_001434661.1| - 3.2e-21 74.8 0.0 5.9e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 NOSIC (NUC001) domain DUF3173 PF11372.3 gi|156936865|ref|YP_001434661.1| - 0.018 14.5 0.0 0.051 13.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) WAPL PF07814.8 gi|156936865|ref|YP_001434661.1| - 0.13 10.9 0.1 0.21 10.2 0.1 1.4 1 0 0 1 1 1 0 Wings apart-like protein regulation of heterochromatin HHH_5 PF14520.1 gi|156936865|ref|YP_001434661.1| - 1 9.5 6.2 4.8 7.4 1.3 3.4 2 2 0 2 2 2 0 Helix-hairpin-helix domain Metallophos PF00149.23 gi|156936867|ref|YP_001434663.1| - 3.1e-17 62.6 0.1 4.8e-17 62.0 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3847 PF12958.2 gi|156936867|ref|YP_001434663.1| - 0.084 12.6 0.2 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) RELT PF12606.3 gi|156936868|ref|YP_001434664.1| - 0.021 13.9 0.1 0.046 12.8 0.1 1.4 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 DUF2079 PF09852.4 gi|156936869|ref|YP_001434665.1| - 1.4e-17 63.5 20.9 1.8e-17 63.2 14.5 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2079) EpsG PF14897.1 gi|156936869|ref|YP_001434665.1| - 0.19 10.6 15.1 0.014 14.3 3.5 2.2 1 1 1 2 2 2 0 EpsG family RHH_1 PF01402.16 gi|156936870|ref|YP_001434666.1| - 4.9e-08 32.5 0.1 1.2e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|156936870|ref|YP_001434666.1| - 3e-06 26.8 0.1 8.8e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix domain HTH_17 PF12728.2 gi|156936870|ref|YP_001434666.1| - 0.0093 16.1 0.1 0.021 15.0 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|156936870|ref|YP_001434666.1| - 0.023 14.6 0.3 1.6 8.7 0.1 3.1 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF3618 PF12277.3 gi|156936870|ref|YP_001434666.1| - 0.058 13.4 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) TrmB PF01978.14 gi|156936870|ref|YP_001434666.1| - 0.16 11.7 0.6 0.49 10.1 0.1 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GatB_N PF02934.10 gi|156936872|ref|YP_001434668.1| - 4e-83 278.6 0.1 6.5e-83 277.9 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.9 gi|156936872|ref|YP_001434668.1| - 3.8e-18 65.4 0.0 2.5e-17 62.7 0.0 2.4 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.13 gi|156936872|ref|YP_001434668.1| - 1.9e-17 63.3 7.3 1.9e-17 63.3 5.1 2.7 3 0 0 3 3 3 1 GatB domain YqeY PF09424.5 gi|156936872|ref|YP_001434668.1| - 1.5e-05 24.9 5.8 7.5e-05 22.6 4.0 2.3 1 1 0 1 1 1 1 Yqey-like protein Ribosomal_S11 PF00411.14 gi|156936872|ref|YP_001434668.1| - 0.07 13.3 0.1 0.64 10.2 0.1 2.6 2 0 0 2 2 2 0 Ribosomal protein S11 ASL_C PF08328.6 gi|156936872|ref|YP_001434668.1| - 0.14 12.0 6.7 0.3 10.9 0.6 3.2 4 0 0 4 4 4 0 Adenylosuccinate lyase C-terminal DNA_primase_lrg PF04104.9 gi|156936873|ref|YP_001434669.1| - 4.4e-29 101.5 0.0 6.1e-29 101.0 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Lactamase_B_3 PF13483.1 gi|156936874|ref|YP_001434670.1| - 3.3e-28 98.4 0.2 4.8e-28 97.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|156936874|ref|YP_001434670.1| - 2.4e-14 53.3 0.1 3.2e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|156936874|ref|YP_001434670.1| - 0.0023 17.6 3.1 0.0067 16.0 2.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily SplA PF11132.3 gi|156936874|ref|YP_001434670.1| - 0.1 12.3 0.7 0.95 9.2 0.1 2.4 1 1 1 2 2 2 0 Transcriptional regulator protein (SplA) Cupin_2 PF07883.6 gi|156936875|ref|YP_001434671.1| - 4e-20 71.1 0.6 6.2e-20 70.4 0.4 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|156936875|ref|YP_001434671.1| - 3.3e-09 36.5 0.2 4.1e-09 36.2 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|156936875|ref|YP_001434671.1| - 4e-05 23.2 0.0 4.5e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|156936875|ref|YP_001434671.1| - 9.2e-05 21.7 0.1 0.00019 20.7 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|156936875|ref|YP_001434671.1| - 0.00013 21.4 0.0 0.00019 20.8 0.0 1.2 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.3 gi|156936875|ref|YP_001434671.1| - 0.0029 17.5 0.0 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.2 gi|156936875|ref|YP_001434671.1| - 0.0032 17.2 0.1 0.0046 16.7 0.1 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain GPI PF06560.6 gi|156936875|ref|YP_001434671.1| - 0.079 11.9 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) EutQ PF06249.7 gi|156936875|ref|YP_001434671.1| - 0.086 12.3 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Asp_Arg_Hydrox PF05118.10 gi|156936875|ref|YP_001434671.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.3 1 1 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase AAA PF00004.24 gi|156936876|ref|YP_001434672.1| - 1e-06 28.9 1.9 0.00027 21.1 0.0 4.2 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) A_thal_3526 PF09713.5 gi|156936876|ref|YP_001434672.1| - 0.45 10.6 3.7 0.93 9.6 0.2 3.2 4 0 0 4 4 4 0 Plant protein 1589 of unknown function (A_thal_3526) DUF948 PF06103.6 gi|156936876|ref|YP_001434672.1| - 2.6 7.9 7.5 2.9 7.8 0.1 4.5 5 1 1 6 6 6 0 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|156936876|ref|YP_001434672.1| - 3.7 6.6 8.1 0.71 8.9 0.1 2.9 2 1 1 3 3 3 0 Reovirus sigma C capsid protein DUF359 PF04019.7 gi|156936877|ref|YP_001434673.1| - 1.5e-28 98.6 0.0 1.9e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Toprim_4 PF13662.1 gi|156936877|ref|YP_001434673.1| - 0.12 12.3 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 2 0 Toprim domain Spt4 PF06093.8 gi|156936878|ref|YP_001434674.1| - 1e-10 41.3 0.0 1.2e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger HypA PF01155.14 gi|156936878|ref|YP_001434674.1| - 0.0045 16.6 0.1 0.0051 16.4 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|156936878|ref|YP_001434674.1| - 0.006 16.0 0.3 1.7 8.2 0.0 2.2 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|156936878|ref|YP_001434674.1| - 0.03 14.7 0.3 0.037 14.4 0.2 1.2 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon TF_Zn_Ribbon PF08271.7 gi|156936878|ref|YP_001434674.1| - 0.055 12.8 0.1 0.055 12.8 0.0 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|156936878|ref|YP_001434674.1| - 0.056 13.3 2.7 1.2 9.1 2.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|156936878|ref|YP_001434674.1| - 0.069 12.9 0.9 0.11 12.3 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon NMD3 PF04981.8 gi|156936878|ref|YP_001434674.1| - 0.13 11.4 0.1 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.1 gi|156936878|ref|YP_001434674.1| - 0.36 10.3 1.6 1.3 8.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156936878|ref|YP_001434674.1| - 1.1 8.5 3.9 0.92 8.8 0.2 1.9 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|156936878|ref|YP_001434674.1| - 1.1 9.2 5.4 4 7.4 3.7 1.9 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) SHS2_Rpb7-N PF03876.12 gi|156936879|ref|YP_001434675.1| - 1.1e-17 63.8 0.0 1.9e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|156936879|ref|YP_001434675.1| - 1.2e-11 44.4 0.8 2.4e-11 43.5 0.6 1.5 1 0 0 1 1 1 1 S1 RNA binding domain MCR_beta_N PF02783.10 gi|156936879|ref|YP_001434675.1| - 0.0039 16.6 0.0 0.0057 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain RNA_pol_Rbc25 PF08292.7 gi|156936879|ref|YP_001434675.1| - 0.0043 17.2 0.0 0.0076 16.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 CoA_binding PF02629.14 gi|156936880|ref|YP_001434676.1| - 2.3e-30 104.9 6.4 4.4e-30 104.0 1.4 2.4 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|156936880|ref|YP_001434676.1| - 2.1e-17 63.1 0.6 4e-17 62.2 0.1 1.7 2 0 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|156936880|ref|YP_001434676.1| - 1.3e-14 54.0 0.1 4.1e-14 52.3 0.0 1.8 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|156936880|ref|YP_001434676.1| - 5.8e-12 45.7 0.2 1.7e-10 41.1 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|156936880|ref|YP_001434676.1| - 7.3e-06 26.4 0.5 0.00017 22.1 0.1 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Ribul_P_3_epim PF00834.14 gi|156936880|ref|YP_001434676.1| - 0.0012 17.9 0.2 0.0022 17.1 0.1 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family ATP-grasp_2 PF08442.5 gi|156936881|ref|YP_001434677.1| - 6.3e-62 208.5 3.1 1.7e-61 207.1 0.5 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|156936881|ref|YP_001434677.1| - 2.1e-20 72.8 0.4 3.8e-20 72.0 0.2 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|156936881|ref|YP_001434677.1| - 1.7e-16 60.1 6.7 3.9e-15 55.6 1.7 2.9 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|156936881|ref|YP_001434677.1| - 1.5e-06 28.0 0.0 3e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|156936881|ref|YP_001434677.1| - 2.4e-06 26.9 0.7 7e-06 25.4 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.14 gi|156936881|ref|YP_001434677.1| - 5.2e-06 26.1 0.1 1.1e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.17 gi|156936881|ref|YP_001434677.1| - 0.00018 20.9 0.0 0.00033 20.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|156936881|ref|YP_001434677.1| - 0.0051 16.3 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Succ_CoA_lig PF13607.1 gi|156936881|ref|YP_001434677.1| - 0.073 12.6 0.1 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Prefoldin PF02996.12 gi|156936882|ref|YP_001434678.1| - 3.8e-22 78.1 1.2 4.3e-22 77.9 0.4 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|156936882|ref|YP_001434678.1| - 2.2e-05 24.1 3.7 0.0034 17.1 0.2 2.2 2 0 0 2 2 2 2 Prefoldin subunit Baculo_PEP_C PF04513.7 gi|156936882|ref|YP_001434678.1| - 0.0028 17.4 0.4 1.9 8.3 0.0 2.2 2 0 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|156936882|ref|YP_001434678.1| - 0.0072 15.9 2.3 1.7 8.2 0.1 2.0 2 0 0 2 2 2 2 IncA protein HR1 PF02185.11 gi|156936882|ref|YP_001434678.1| - 0.012 15.2 2.7 0.054 13.2 0.1 2.4 2 0 0 2 2 2 0 Hr1 repeat DUF4140 PF13600.1 gi|156936882|ref|YP_001434678.1| - 0.013 15.9 2.4 0.1 13.0 0.2 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) BLOC1_2 PF10046.4 gi|156936882|ref|YP_001434678.1| - 0.016 15.3 2.3 0.91 9.6 0.2 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.3 gi|156936882|ref|YP_001434678.1| - 0.021 14.0 0.2 0.27 10.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF1202 PF06717.6 gi|156936882|ref|YP_001434678.1| - 0.029 13.6 0.2 0.096 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1202) Uds1 PF15456.1 gi|156936882|ref|YP_001434678.1| - 0.029 14.3 0.3 0.072 13.0 0.2 1.6 1 1 0 1 1 1 0 Up-regulated During Septation Seryl_tRNA_N PF02403.17 gi|156936882|ref|YP_001434678.1| - 0.029 14.3 2.9 3 7.8 0.1 2.4 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3117 PF11314.3 gi|156936882|ref|YP_001434678.1| - 0.033 13.7 0.6 3.5 7.2 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3117) Bacillus_HBL PF05791.6 gi|156936882|ref|YP_001434678.1| - 0.046 13.0 0.1 3.3 7.0 0.0 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) AAA_32 PF13654.1 gi|156936882|ref|YP_001434678.1| - 0.072 11.7 0.1 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF793 PF05633.6 gi|156936882|ref|YP_001434678.1| - 0.087 11.5 0.1 0.14 10.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF793) DUF2959 PF11172.3 gi|156936882|ref|YP_001434678.1| - 0.088 12.5 0.9 1.8 8.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2959) NPV_P10 PF05531.7 gi|156936882|ref|YP_001434678.1| - 0.097 12.9 2.0 1 9.6 0.1 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.7 gi|156936882|ref|YP_001434678.1| - 0.11 12.2 1.3 0.23 11.2 0.8 1.5 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4382 PF14321.1 gi|156936882|ref|YP_001434678.1| - 0.11 12.5 0.2 0.29 11.2 0.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4382) APG6 PF04111.7 gi|156936882|ref|YP_001434678.1| - 0.12 11.3 1.5 3.3 6.6 0.1 2.0 2 0 0 2 2 2 0 Autophagy protein Apg6 PspA_IM30 PF04012.7 gi|156936882|ref|YP_001434678.1| - 0.22 10.8 3.6 0.35 10.1 0.4 2.1 2 0 0 2 2 2 0 PspA/IM30 family TBPIP PF07106.8 gi|156936882|ref|YP_001434678.1| - 0.24 10.9 2.2 2.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) bZIP_1 PF00170.16 gi|156936882|ref|YP_001434678.1| - 0.27 11.2 4.8 6 6.9 0.1 2.2 2 0 0 2 2 2 0 bZIP transcription factor COG2 PF06148.6 gi|156936882|ref|YP_001434678.1| - 0.27 11.0 1.9 4 7.3 0.1 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FlaC_arch PF05377.6 gi|156936882|ref|YP_001434678.1| - 0.4 10.6 4.1 4.7 7.1 0.2 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Cep57_MT_bd PF06657.8 gi|156936882|ref|YP_001434678.1| - 0.56 10.2 3.7 0.78 9.7 0.2 2.3 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 PspB PF06667.7 gi|156936882|ref|YP_001434678.1| - 1.1 9.2 3.2 5.7 6.9 0.1 2.7 2 1 1 3 3 3 0 Phage shock protein B bZIP_2 PF07716.10 gi|156936882|ref|YP_001434678.1| - 1.8 8.4 6.7 3 7.7 0.2 2.4 2 0 0 2 2 2 0 Basic region leucine zipper Prefoldin_2 PF01920.15 gi|156936883|ref|YP_001434679.1| - 0.0023 17.6 1.7 0.0029 17.3 1.2 1.1 1 0 0 1 1 1 1 Prefoldin subunit DUF2228 PF10228.4 gi|156936883|ref|YP_001434679.1| - 0.07 12.6 0.1 0.079 12.5 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) DUF4128 PF13554.1 gi|156936883|ref|YP_001434679.1| - 0.12 12.0 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage related domain of unknown function Prefoldin PF02996.12 gi|156936883|ref|YP_001434679.1| - 0.14 11.8 2.0 0.24 11.0 0.2 1.9 1 1 1 2 2 2 0 Prefoldin subunit Exonuc_VII_S PF02609.11 gi|156936883|ref|YP_001434679.1| - 1.2 8.9 6.1 1.6 8.5 0.2 2.7 2 1 1 3 3 3 0 Exonuclease VII small subunit TP_methylase PF00590.15 gi|156936884|ref|YP_001434680.1| - 1.3e-39 136.1 2.0 1.5e-39 135.9 1.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|156936884|ref|YP_001434680.1| - 0.0023 18.1 0.0 0.0035 17.5 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Cupin_3 PF05899.7 gi|156936884|ref|YP_001434680.1| - 0.042 13.2 0.1 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF861) HEM4 PF02602.10 gi|156936885|ref|YP_001434681.1| - 1.4e-39 135.7 2.3 1.6e-39 135.5 1.6 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD 2-Hacid_dh PF00389.25 gi|156936885|ref|YP_001434681.1| - 0.00014 21.3 1.3 0.021 14.2 0.1 2.7 2 2 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Nitro_FeMo-Co PF02579.12 gi|156936885|ref|YP_001434681.1| - 0.017 15.2 0.6 7.9 6.6 0.0 3.6 2 1 2 4 4 4 0 Dinitrogenase iron-molybdenum cofactor DUF552 PF04472.7 gi|156936885|ref|YP_001434681.1| - 0.095 12.6 0.2 0.47 10.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF552) Chordopox_A30L PF06015.7 gi|156936886|ref|YP_001434682.1| - 0.036 13.6 0.0 0.039 13.5 0.0 1.1 1 0 0 1 1 1 0 Chordopoxvirus A30L protein UPF0278 PF08745.6 gi|156936887|ref|YP_001434683.1| - 4.5e-60 202.4 0.2 5.2e-60 202.2 0.1 1.0 1 0 0 1 1 1 1 UPF0278 family PIN PF01850.16 gi|156936887|ref|YP_001434683.1| - 0.0014 18.9 1.7 0.0033 17.7 1.2 1.9 1 1 0 1 1 1 1 PIN domain ABC2_membrane_4 PF12730.2 gi|156936888|ref|YP_001434684.1| - 0.0006 19.0 19.4 0.00094 18.4 13.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF1263 PF06882.7 gi|156936889|ref|YP_001434685.1| - 0.065 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1263) Rubrerythrin PF02915.12 gi|156936890|ref|YP_001434686.1| - 1.9e-10 41.1 1.3 2.4e-10 40.8 0.9 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|156936890|ref|YP_001434686.1| - 2.2e-06 27.8 0.8 3.2e-06 27.3 0.3 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF2383) GldM_N PF12081.3 gi|156936890|ref|YP_001434686.1| - 0.0028 17.2 0.1 0.0034 16.9 0.1 1.1 1 0 0 1 1 1 1 GldM N-terminal domain DUF2202 PF09968.4 gi|156936890|ref|YP_001434686.1| - 0.059 13.0 0.1 0.071 12.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) DUF3231 PF11553.3 gi|156936890|ref|YP_001434686.1| - 0.064 12.7 0.4 0.17 11.3 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3231) Cpn60_TCP1 PF00118.19 gi|156936891|ref|YP_001434687.1| - 3.3e-165 550.3 13.0 3.8e-165 550.1 9.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Arc_PepC PF06819.6 gi|156936891|ref|YP_001434687.1| - 0.001 18.9 0.5 0.0057 16.5 0.0 2.5 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminal Domain FliH PF02108.11 gi|156936891|ref|YP_001434687.1| - 0.0021 17.9 0.2 1.1 9.1 0.0 2.9 1 1 1 2 2 2 2 Flagellar assembly protein FliH HK97-gp10_like PF04883.7 gi|156936891|ref|YP_001434687.1| - 0.38 11.7 16.8 30 5.6 0.5 5.7 4 2 1 5 5 5 0 Bacteriophage HK97-gp10, putative tail-component CoA_binding_2 PF13380.1 gi|156936891|ref|YP_001434687.1| - 0.65 10.1 3.8 4.4 7.5 0.1 3.6 3 3 1 4 4 4 0 CoA binding domain DUF89 PF01937.14 gi|156936892|ref|YP_001434688.1| - 5.3e-08 32.0 0.0 2.3e-07 29.9 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF89 Peptidase_M8 PF01457.11 gi|156936892|ref|YP_001434688.1| - 0.2 9.9 0.0 0.26 9.5 0.0 1.1 1 0 0 1 1 1 0 Leishmanolysin Glyco_trans_4_4 PF13579.1 gi|156936893|ref|YP_001434689.1| - 3.9e-16 59.5 0.3 8.9e-16 58.4 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|156936893|ref|YP_001434689.1| - 1.5e-07 31.3 0.1 3e-07 30.3 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|156936893|ref|YP_001434689.1| - 4.6e-05 22.9 0.0 0.00011 21.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|156936893|ref|YP_001434689.1| - 0.0012 18.3 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain DEDD_Tnp_IS110 PF01548.12 gi|156936893|ref|YP_001434689.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Transposase TrkA_N PF02254.13 gi|156936893|ref|YP_001434689.1| - 0.16 11.9 0.0 0.76 9.7 0.0 2.0 3 0 0 3 3 3 0 TrkA-N domain HxlR PF01638.12 gi|156936894|ref|YP_001434690.1| - 2.7e-11 42.9 0.4 5.6e-11 41.9 0.2 1.5 1 1 1 2 2 2 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|156936894|ref|YP_001434690.1| - 1.9e-07 31.2 0.1 4.8e-07 30.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|156936894|ref|YP_001434690.1| - 3.5e-07 29.9 0.2 8.9e-07 28.6 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|156936894|ref|YP_001434690.1| - 8.1e-07 28.6 0.3 1.8e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|156936894|ref|YP_001434690.1| - 4.3e-06 26.6 0.1 8.4e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|156936894|ref|YP_001434690.1| - 5.6e-06 25.8 0.1 1e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|156936894|ref|YP_001434690.1| - 1.5e-05 25.0 0.1 2.8e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|156936894|ref|YP_001434690.1| - 0.00032 20.4 0.1 0.00058 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|156936894|ref|YP_001434690.1| - 0.0008 19.0 0.1 0.0014 18.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|156936894|ref|YP_001434690.1| - 0.002 17.4 0.5 0.002 17.4 0.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|156936894|ref|YP_001434690.1| - 0.0032 17.1 0.0 0.0057 16.3 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|156936894|ref|YP_001434690.1| - 0.0045 16.6 0.7 0.0045 16.6 0.5 1.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|156936894|ref|YP_001434690.1| - 0.012 15.3 0.1 0.024 14.3 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Mga PF08280.6 gi|156936894|ref|YP_001434690.1| - 0.02 14.6 0.4 0.047 13.4 0.0 1.9 3 0 0 3 3 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF505 PF04458.7 gi|156936894|ref|YP_001434690.1| - 0.031 12.4 1.4 0.037 12.1 0.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF505) Laminin_II PF06009.7 gi|156936894|ref|YP_001434690.1| - 0.055 13.2 1.1 0.38 10.4 0.7 1.9 1 1 0 1 1 1 0 Laminin Domain II DDRGK PF09756.4 gi|156936894|ref|YP_001434690.1| - 0.083 12.2 0.8 0.11 11.8 0.6 1.3 1 0 0 1 1 1 0 DDRGK domain PBCV_basic_adap PF08789.5 gi|156936894|ref|YP_001434690.1| - 0.089 12.4 0.4 0.17 11.5 0.3 1.4 1 0 0 1 1 1 0 PBCV-specific basic adaptor domain HemN_C PF06969.11 gi|156936894|ref|YP_001434690.1| - 0.1 12.6 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 HemN C-terminal domain Mrr_N PF14338.1 gi|156936894|ref|YP_001434690.1| - 0.11 12.6 0.7 0.56 10.3 0.1 2.2 2 1 1 3 3 3 0 Mrr N-terminal domain DUF4423 PF14394.1 gi|156936894|ref|YP_001434690.1| - 0.11 12.0 0.8 0.47 9.9 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) B-block_TFIIIC PF04182.7 gi|156936894|ref|YP_001434690.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2203 PF09969.4 gi|156936894|ref|YP_001434690.1| - 0.12 12.5 0.3 0.23 11.6 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Mga PF05043.8 gi|156936894|ref|YP_001434690.1| - 0.13 12.5 0.5 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 Mga helix-turn-helix domain Replic_Relax PF13814.1 gi|156936894|ref|YP_001434690.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation DUF2250 PF10007.4 gi|156936894|ref|YP_001434690.1| - 0.15 12.0 2.7 0.27 11.1 0.1 2.5 2 2 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|156936894|ref|YP_001434690.1| - 0.36 10.3 4.9 0.17 11.3 0.3 2.1 1 1 1 2 2 2 0 TFIIE alpha subunit DUF4250 PF14056.1 gi|156936894|ref|YP_001434690.1| - 0.38 10.4 2.0 15 5.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) Peptidase_M24 PF00557.19 gi|156936895|ref|YP_001434691.1| - 1.7e-55 187.7 0.0 2.1e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|156936895|ref|YP_001434691.1| - 1.4e-07 32.0 0.0 3.2e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Snf7 PF03357.16 gi|156936896|ref|YP_001434692.1| - 2.4e-05 23.7 5.3 3.2e-05 23.3 3.7 1.2 1 0 0 1 1 1 1 Snf7 CENP-Q PF13094.1 gi|156936896|ref|YP_001434692.1| - 0.045 13.7 4.2 0.16 11.9 2.8 1.9 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit CesA PF11439.3 gi|156936896|ref|YP_001434692.1| - 0.06 13.2 1.2 0.26 11.2 0.2 2.2 2 0 0 2 2 2 0 Type III secretion system filament chaperone CesA Baculo_PEP_C PF04513.7 gi|156936896|ref|YP_001434692.1| - 0.093 12.5 0.0 0.16 11.7 0.0 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus MutS_III PF05192.13 gi|156936896|ref|YP_001434692.1| - 0.25 11.1 3.0 0.33 10.7 2.1 1.2 1 0 0 1 1 1 0 MutS domain III Spc24 PF08286.6 gi|156936896|ref|YP_001434692.1| - 0.64 9.7 5.6 0.34 10.6 0.8 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 HTH_20 PF12840.2 gi|156936896|ref|YP_001434692.1| - 1.2 8.9 4.4 8.2 6.3 0.0 3.5 4 1 0 4 4 4 0 Helix-turn-helix domain CDC37_N PF03234.9 gi|156936896|ref|YP_001434692.1| - 1.7 8.9 4.5 8.1 6.7 3.1 1.9 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Seryl_tRNA_N PF02403.17 gi|156936896|ref|YP_001434692.1| - 2.7 8.0 13.9 0.24 11.4 3.1 2.6 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF1682 PF07946.9 gi|156936896|ref|YP_001434692.1| - 3.8 6.2 7.9 1.7 7.4 3.7 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1682) CCG PF02754.11 gi|156936897|ref|YP_001434693.1| - 1e-12 47.8 0.1 2.6e-12 46.5 0.0 1.7 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_10 PF13237.1 gi|156936897|ref|YP_001434693.1| - 7.6e-07 28.8 10.5 9.3e-07 28.5 5.6 2.3 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156936897|ref|YP_001434693.1| - 2e-05 24.5 8.1 2e-05 24.5 5.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156936897|ref|YP_001434693.1| - 6.9e-05 23.1 13.6 7.8e-05 22.9 6.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156936897|ref|YP_001434693.1| - 0.0013 18.1 16.1 0.04 13.5 0.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156936897|ref|YP_001434693.1| - 0.0021 18.2 17.0 0.035 14.4 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|156936897|ref|YP_001434693.1| - 0.004 16.9 16.0 0.085 12.8 2.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156936897|ref|YP_001434693.1| - 0.005 17.0 10.8 0.005 17.0 7.5 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156936897|ref|YP_001434693.1| - 0.024 14.9 16.0 0.051 13.9 1.0 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156936897|ref|YP_001434693.1| - 0.033 14.7 3.4 4.9 7.8 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|156936897|ref|YP_001434693.1| - 0.057 13.2 17.1 0.087 12.7 2.1 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156936897|ref|YP_001434693.1| - 0.21 12.0 12.2 0.61 10.5 0.5 2.9 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156936897|ref|YP_001434693.1| - 1.3 9.0 16.5 0.078 12.8 1.6 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156936897|ref|YP_001434693.1| - 2.9 8.7 15.0 4.8 8.0 1.1 3.1 2 1 3 5 5 4 0 4Fe-4S double cluster binding domain Ribosomal_S27e PF01667.12 gi|156936898|ref|YP_001434694.1| - 4.9e-21 74.0 0.2 5.5e-21 73.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 DNA_ligase_ZBD PF03119.11 gi|156936898|ref|YP_001434694.1| - 0.0023 17.6 2.9 0.02 14.5 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|156936898|ref|YP_001434694.1| - 0.0041 16.4 0.7 0.006 15.8 0.5 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|156936898|ref|YP_001434694.1| - 0.0065 16.1 2.1 0.076 12.7 0.1 2.1 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|156936898|ref|YP_001434694.1| - 0.014 14.5 0.9 3.5 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PADR1 PF08063.7 gi|156936898|ref|YP_001434694.1| - 0.039 13.3 1.1 0.07 12.5 0.8 1.4 1 1 0 1 1 1 0 PADR1 (NUC008) domain CcmH PF03918.9 gi|156936898|ref|YP_001434694.1| - 0.055 12.4 0.1 0.068 12.1 0.1 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein DUF3797 PF12677.2 gi|156936898|ref|YP_001434694.1| - 0.12 12.0 0.4 0.66 9.6 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|156936898|ref|YP_001434694.1| - 0.13 11.7 3.4 0.47 10.0 2.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|156936898|ref|YP_001434694.1| - 0.18 11.6 1.3 0.96 9.3 1.0 1.7 1 1 1 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|156936898|ref|YP_001434694.1| - 0.4 10.6 2.1 2.1 8.3 1.5 1.9 1 1 1 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|156936898|ref|YP_001434694.1| - 0.55 9.9 3.6 6.3 6.5 2.5 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) ThiC PF01964.13 gi|156936899|ref|YP_001434695.1| - 5e-181 601.8 0.0 5.7e-181 601.6 0.0 1.0 1 0 0 1 1 1 1 ThiC family DUF763 PF05559.6 gi|156936900|ref|YP_001434696.1| - 6.3e-107 357.2 0.0 1.8e-106 355.7 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF763) ABC_tran PF00005.22 gi|156936901|ref|YP_001434697.1| - 2.6e-35 121.7 0.0 3.5e-35 121.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156936901|ref|YP_001434697.1| - 5.6e-15 56.0 0.0 7.3e-08 32.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156936901|ref|YP_001434697.1| - 4.4e-10 39.1 0.2 4.6e-08 32.5 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|156936901|ref|YP_001434697.1| - 3.5e-06 25.8 0.1 0.0063 15.1 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|156936901|ref|YP_001434697.1| - 4.3e-06 26.0 1.3 0.0078 15.2 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|156936901|ref|YP_001434697.1| - 7.1e-06 26.4 1.4 1.9e-05 25.1 1.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|156936901|ref|YP_001434697.1| - 1.3e-05 24.6 0.0 2.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|156936901|ref|YP_001434697.1| - 2.8e-05 24.2 0.0 0.00011 22.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|156936901|ref|YP_001434697.1| - 0.00024 21.8 0.1 0.00063 20.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|156936901|ref|YP_001434697.1| - 0.0004 19.6 0.1 0.00088 18.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|156936901|ref|YP_001434697.1| - 0.00058 19.9 0.0 0.0011 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|156936901|ref|YP_001434697.1| - 0.00065 19.3 0.0 0.011 15.4 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|156936901|ref|YP_001434697.1| - 0.001 18.5 0.1 0.0067 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_30 PF13604.1 gi|156936901|ref|YP_001434697.1| - 0.002 17.7 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|156936901|ref|YP_001434697.1| - 0.0025 18.1 0.5 0.015 15.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|156936901|ref|YP_001434697.1| - 0.0028 16.4 0.0 0.0031 16.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DUF3987 PF13148.1 gi|156936901|ref|YP_001434697.1| - 0.0081 14.7 0.4 0.037 12.5 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3987) Arch_ATPase PF01637.13 gi|156936901|ref|YP_001434697.1| - 0.0082 15.8 1.8 0.02 14.5 0.0 2.2 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|156936901|ref|YP_001434697.1| - 0.0083 15.7 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|156936901|ref|YP_001434697.1| - 0.01 14.7 0.0 0.018 13.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|156936901|ref|YP_001434697.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|156936901|ref|YP_001434697.1| - 0.019 15.1 0.2 0.25 11.5 0.1 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.6 gi|156936901|ref|YP_001434697.1| - 0.021 13.5 0.0 0.034 12.8 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_14 PF13173.1 gi|156936901|ref|YP_001434697.1| - 0.021 14.7 0.0 0.064 13.1 0.0 1.8 1 1 1 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|156936901|ref|YP_001434697.1| - 0.024 13.3 0.1 0.045 12.4 0.0 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein NB-ARC PF00931.17 gi|156936901|ref|YP_001434697.1| - 0.024 13.4 0.0 0.043 12.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|156936901|ref|YP_001434697.1| - 0.028 14.3 0.2 0.051 13.5 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|156936901|ref|YP_001434697.1| - 0.029 13.8 0.1 0.07 12.5 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|156936901|ref|YP_001434697.1| - 0.044 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|156936901|ref|YP_001434697.1| - 0.053 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|156936901|ref|YP_001434697.1| - 0.056 12.8 0.0 0.16 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|156936901|ref|YP_001434697.1| - 0.069 12.7 0.1 0.19 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|156936901|ref|YP_001434697.1| - 0.075 12.9 0.0 0.83 9.6 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.14 gi|156936901|ref|YP_001434697.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|156936901|ref|YP_001434697.1| - 0.11 11.2 0.0 0.19 10.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein RNA_helicase PF00910.17 gi|156936901|ref|YP_001434697.1| - 0.14 12.3 0.0 0.37 10.9 0.0 1.8 2 0 0 2 2 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|156936902|ref|YP_001434698.1| - 5.9e-11 42.2 14.4 5.9e-11 42.2 10.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component CECR6_TMEM121 PF14997.1 gi|156936902|ref|YP_001434698.1| - 0.58 9.7 7.3 1 8.9 1.5 2.5 1 1 0 2 2 2 0 CECR6/TMEM121 family BPD_transp_1 PF00528.17 gi|156936903|ref|YP_001434699.1| - 1.3e-11 44.3 18.5 1.3e-11 44.3 12.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DctQ PF04290.7 gi|156936903|ref|YP_001434699.1| - 0.053 13.2 19.7 0.36 10.5 6.3 3.6 3 1 1 4 4 4 0 Tripartite ATP-independent periplasmic transporters, DctQ component Peptidase_M50 PF02163.17 gi|156936904|ref|YP_001434700.1| - 2.7e-13 49.3 9.2 2.7e-13 49.3 6.4 2.4 1 1 0 1 1 1 1 Peptidase family M50 tRNA_bind PF01588.15 gi|156936905|ref|YP_001434701.1| - 6.5e-29 99.6 0.1 7.4e-29 99.4 0.1 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF1635 PF07795.6 gi|156936905|ref|YP_001434701.1| - 0.038 13.3 0.0 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) Hist_deacetyl PF00850.14 gi|156936906|ref|YP_001434702.1| - 2.8e-61 207.5 0.0 3.7e-61 207.1 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain B12-binding PF02310.14 gi|156936906|ref|YP_001434702.1| - 0.0014 18.5 0.0 0.031 14.1 0.0 2.7 3 0 0 3 3 3 1 B12 binding domain AP_endonuc_2 PF01261.19 gi|156936907|ref|YP_001434703.1| - 0.015 14.5 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel ThiF PF00899.16 gi|156936910|ref|YP_001434706.1| - 9.3e-09 35.2 0.0 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 ThiF family Gp-FAR-1 PF05823.7 gi|156936910|ref|YP_001434706.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) MoeZ_MoeB PF05237.8 gi|156936910|ref|YP_001434706.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 MoeZ/MoeB domain zf-B_box PF00643.19 gi|156936911|ref|YP_001434707.1| - 0.00013 21.7 25.2 0.0026 17.6 2.9 3.8 3 1 1 4 4 4 2 B-box zinc finger DUF2180 PF09947.4 gi|156936911|ref|YP_001434707.1| - 0.00036 20.2 3.0 0.00036 20.2 2.1 3.3 1 1 2 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2180) DZR PF12773.2 gi|156936911|ref|YP_001434707.1| - 0.002 17.8 27.7 0.034 13.9 7.2 3.2 1 1 0 2 2 2 2 Double zinc ribbon FYVE PF01363.16 gi|156936911|ref|YP_001434707.1| - 0.54 10.1 30.1 0.76 9.7 11.5 3.4 1 1 1 2 2 2 0 FYVE zinc finger zf-C3HC4_3 PF13920.1 gi|156936911|ref|YP_001434707.1| - 1.8 8.3 30.1 0.057 13.0 7.8 3.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.8 gi|156936911|ref|YP_001434707.1| - 8.1 6.2 28.6 5.1 6.9 5.4 3.5 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type Cript PF10235.4 gi|156936911|ref|YP_001434707.1| - 9.4 6.6 18.5 0.49 10.7 4.1 2.7 1 1 2 3 3 3 0 Microtubule-associated protein CRIPT ABC_tran PF00005.22 gi|156936913|ref|YP_001434709.1| - 1.1e-32 113.2 0.0 1.7e-32 112.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156936913|ref|YP_001434709.1| - 1.3e-15 58.1 0.1 2.6e-07 30.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156936913|ref|YP_001434709.1| - 5.7e-09 35.5 0.1 0.0009 18.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|156936913|ref|YP_001434709.1| - 5.8e-06 26.1 0.1 0.00012 21.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|156936913|ref|YP_001434709.1| - 7.6e-05 22.1 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|156936913|ref|YP_001434709.1| - 0.00011 21.3 0.0 0.12 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|156936913|ref|YP_001434709.1| - 0.0002 20.9 0.1 0.0025 17.3 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|156936913|ref|YP_001434709.1| - 0.00021 21.4 0.2 0.0019 18.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|156936913|ref|YP_001434709.1| - 0.00052 20.4 0.1 0.0013 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|156936913|ref|YP_001434709.1| - 0.003 17.5 0.0 0.0074 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|156936913|ref|YP_001434709.1| - 0.0034 16.8 0.4 0.015 14.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|156936913|ref|YP_001434709.1| - 0.0045 15.6 0.2 0.58 8.6 0.1 2.3 2 0 0 2 2 2 1 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|156936913|ref|YP_001434709.1| - 0.0078 15.9 0.1 0.032 13.9 0.1 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_13 PF13166.1 gi|156936913|ref|YP_001434709.1| - 0.009 14.5 0.1 2.1 6.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|156936913|ref|YP_001434709.1| - 0.0093 15.5 0.2 0.66 9.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|156936913|ref|YP_001434709.1| - 0.0095 15.8 0.0 0.019 14.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|156936913|ref|YP_001434709.1| - 0.019 14.8 0.1 0.42 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|156936913|ref|YP_001434709.1| - 0.02 14.0 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|156936913|ref|YP_001434709.1| - 0.046 13.9 0.6 0.99 9.6 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|156936913|ref|YP_001434709.1| - 0.047 13.5 0.1 0.073 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|156936913|ref|YP_001434709.1| - 0.051 13.0 0.6 0.21 10.9 0.2 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|156936913|ref|YP_001434709.1| - 0.055 13.2 0.3 0.25 11.1 0.1 1.9 2 0 0 2 2 2 0 Dynamin family Zeta_toxin PF06414.7 gi|156936913|ref|YP_001434709.1| - 0.064 12.3 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MutS_V PF00488.16 gi|156936913|ref|YP_001434709.1| - 0.095 12.0 0.0 0.23 10.8 0.0 1.5 2 0 0 2 2 2 0 MutS domain V NACHT PF05729.7 gi|156936913|ref|YP_001434709.1| - 0.1 12.2 0.2 0.23 11.1 0.1 1.6 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|156936913|ref|YP_001434709.1| - 0.11 12.0 0.1 0.28 10.6 0.0 1.7 1 1 0 1 1 1 0 FtsK/SpoIIIE family HAD PF12710.2 gi|156936913|ref|YP_001434709.1| - 0.11 12.6 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Zot PF05707.7 gi|156936913|ref|YP_001434709.1| - 0.16 11.4 0.0 0.43 10.0 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_24 PF13479.1 gi|156936913|ref|YP_001434709.1| - 0.17 11.4 0.3 0.78 9.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain Replic_Relax PF13814.1 gi|156936914|ref|YP_001434710.1| - 0.013 15.3 0.2 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation tRNA_int_endo PF01974.12 gi|156936915|ref|YP_001434711.1| - 3.3e-28 97.2 0.1 4.8e-28 96.7 0.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|156936915|ref|YP_001434711.1| - 2.1e-19 68.8 0.0 4e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|156936915|ref|YP_001434711.1| - 0.0011 18.3 0.0 0.002 17.5 0.0 1.4 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term PhoU_div PF01865.11 gi|156936916|ref|YP_001434712.1| - 0.00049 19.3 3.9 0.0015 17.7 0.8 2.5 1 1 0 2 2 2 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|156936916|ref|YP_001434712.1| - 0.0085 16.5 8.6 0.024 15.0 0.5 3.1 2 2 1 3 3 3 1 PhoU domain DUF948 PF06103.6 gi|156936916|ref|YP_001434712.1| - 0.084 12.7 1.2 0.55 10.1 0.0 2.4 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) AsnC_trans_reg PF01037.16 gi|156936917|ref|YP_001434713.1| - 1.2e-14 53.7 0.4 4e-14 52.0 0.1 1.9 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|156936917|ref|YP_001434713.1| - 9.1e-14 50.5 2.8 1.7e-13 49.6 1.9 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|156936917|ref|YP_001434713.1| - 9.1e-09 34.7 0.4 9.1e-09 34.7 0.3 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|156936917|ref|YP_001434713.1| - 3.2e-08 33.0 1.9 6.5e-08 32.0 0.5 2.1 3 0 0 3 3 3 1 HTH domain TFIIE_alpha PF02002.12 gi|156936917|ref|YP_001434713.1| - 5.1e-07 29.1 2.2 0.00011 21.6 0.3 2.2 2 0 0 2 2 2 2 TFIIE alpha subunit TrmB PF01978.14 gi|156936917|ref|YP_001434713.1| - 1e-06 28.3 1.2 4.7e-05 23.0 0.1 2.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|156936917|ref|YP_001434713.1| - 1.2e-06 27.9 0.7 1.2e-06 27.9 0.5 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|156936917|ref|YP_001434713.1| - 2.7e-05 23.7 0.5 5.4e-05 22.8 0.2 1.7 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.15 gi|156936917|ref|YP_001434713.1| - 3.5e-05 23.3 0.1 9e-05 22.0 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|156936917|ref|YP_001434713.1| - 4.7e-05 22.9 0.1 0.00014 21.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_Mga PF08280.6 gi|156936917|ref|YP_001434713.1| - 0.00019 21.1 1.9 0.00028 20.5 0.4 1.9 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.1 gi|156936917|ref|YP_001434713.1| - 0.00057 20.1 0.1 0.0015 18.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|156936917|ref|YP_001434713.1| - 0.0013 18.4 0.0 0.0052 16.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|156936917|ref|YP_001434713.1| - 0.0019 18.2 0.2 0.0067 16.5 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator FaeA PF04703.7 gi|156936917|ref|YP_001434713.1| - 0.0029 17.7 0.0 0.0074 16.4 0.0 1.7 1 0 0 1 1 1 1 FaeA-like protein Mga PF05043.8 gi|156936917|ref|YP_001434713.1| - 0.0036 17.5 1.7 0.0043 17.2 0.1 1.8 2 1 0 2 2 1 1 Mga helix-turn-helix domain HTH_34 PF13601.1 gi|156936917|ref|YP_001434713.1| - 0.0041 17.1 0.9 0.0054 16.7 0.1 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|156936917|ref|YP_001434713.1| - 0.0064 16.2 0.0 0.02 14.6 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|156936917|ref|YP_001434713.1| - 0.0073 16.2 0.2 0.027 14.3 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_12 PF08461.5 gi|156936917|ref|YP_001434713.1| - 0.0098 15.6 1.1 0.025 14.2 0.2 2.1 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain EAP30 PF04157.11 gi|156936917|ref|YP_001434713.1| - 0.015 14.5 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Sigma70_r4_2 PF08281.7 gi|156936917|ref|YP_001434713.1| - 0.018 14.5 0.2 0.3 10.5 0.1 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|156936917|ref|YP_001434713.1| - 0.031 14.3 0.1 0.072 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_39 PF14090.1 gi|156936917|ref|YP_001434713.1| - 0.041 13.3 0.5 0.096 12.1 0.1 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|156936917|ref|YP_001434713.1| - 0.048 13.3 0.0 0.15 11.7 0.0 1.8 2 0 0 2 2 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|156936917|ref|YP_001434713.1| - 0.082 12.9 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|156936917|ref|YP_001434713.1| - 0.083 12.4 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|156936917|ref|YP_001434713.1| - 0.089 12.1 1.4 0.17 11.1 0.0 2.2 3 0 0 3 3 2 0 Sigma-70, region 4 DUF2551 PF10826.3 gi|156936917|ref|YP_001434713.1| - 0.11 12.4 1.1 1.4 8.8 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2551) HxlR PF01638.12 gi|156936917|ref|YP_001434713.1| - 0.11 12.1 0.2 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_1 PF00126.22 gi|156936917|ref|YP_001434713.1| - 0.12 12.1 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GATase_6 PF13522.1 gi|156936918|ref|YP_001434714.1| - 8.9e-09 35.3 0.0 1.4e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|156936918|ref|YP_001434714.1| - 0.0024 16.5 0.0 0.0037 15.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Rhomboid PF01694.17 gi|156936920|ref|YP_001434716.1| - 7.5e-30 103.8 15.6 7.5e-30 103.8 10.8 1.5 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|156936920|ref|YP_001434716.1| - 0.082 13.2 0.2 0.082 13.2 0.1 2.1 3 0 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) DUF505 PF04458.7 gi|156936921|ref|YP_001434717.1| - 1.3e-81 274.5 8.0 1.9e-81 274.0 5.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.9 gi|156936921|ref|YP_001434717.1| - 2e-07 30.6 3.8 0.091 12.5 0.5 3.8 4 0 0 4 4 4 3 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|156936921|ref|YP_001434717.1| - 1.1e-06 28.3 0.1 1.7 8.5 0.0 4.3 4 0 0 4 4 4 3 Winged helix-turn-helix Mrr_N PF14338.1 gi|156936921|ref|YP_001434717.1| - 5.2e-06 26.4 0.6 5.1 7.2 0.0 5.2 6 0 0 6 6 6 2 Mrr N-terminal domain HxlR PF01638.12 gi|156936921|ref|YP_001434717.1| - 1.6e-05 24.4 0.2 0.79 9.3 0.1 4.1 3 0 0 3 3 3 2 HxlR-like helix-turn-helix PaaX PF07848.7 gi|156936921|ref|YP_001434717.1| - 0.00048 20.0 0.2 0.088 12.8 0.0 3.2 3 0 0 3 3 3 1 PaaX-like protein UBA PF00627.26 gi|156936921|ref|YP_001434717.1| - 0.026 14.3 0.0 0.42 10.5 0.0 3.2 3 0 0 3 3 3 0 UBA/TS-N domain DUF4364 PF14277.1 gi|156936921|ref|YP_001434717.1| - 0.03 13.9 0.0 5.9 6.4 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4364) HTH_9 PF08221.6 gi|156936921|ref|YP_001434717.1| - 0.12 12.2 0.0 2.9 7.8 0.0 2.7 3 0 0 3 3 3 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF3116 PF11313.3 gi|156936921|ref|YP_001434717.1| - 0.81 9.3 8.6 30 4.3 0.1 4.5 5 0 0 5 5 5 0 Protein of unknown function (DUF3116) SpoU_methylase PF00588.14 gi|156936922|ref|YP_001434718.1| - 5.4e-29 100.8 0.0 7.1e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family LTV PF04180.9 gi|156936922|ref|YP_001434718.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Low temperature viability protein MarC PF01914.12 gi|156936923|ref|YP_001434719.1| - 2.9e-38 131.0 15.6 3.3e-38 130.8 10.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2244 PF10003.4 gi|156936923|ref|YP_001434719.1| - 1.3 8.3 3.6 0.74 9.1 0.0 2.3 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) Wzy_C PF04932.10 gi|156936923|ref|YP_001434719.1| - 2.7 7.7 6.6 2.5 7.8 0.4 2.2 1 1 1 2 2 2 0 O-Antigen ligase Helicase_RecD PF05127.9 gi|156936924|ref|YP_001434720.1| - 9.1e-55 185.0 0.0 1.6e-54 184.1 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|156936924|ref|YP_001434720.1| - 1.5e-46 158.1 0.0 7.6e-46 155.9 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|156936924|ref|YP_001434720.1| - 8e-25 86.3 0.0 3e-24 84.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|156936924|ref|YP_001434720.1| - 2.2e-12 46.9 0.0 1.3e-10 41.2 0.0 2.4 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_1 PF00583.19 gi|156936924|ref|YP_001434720.1| - 7.9e-07 29.0 0.0 2.1e-06 27.6 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|156936924|ref|YP_001434720.1| - 2.3e-06 27.6 0.0 7.3e-06 26.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MerR PF00376.18 gi|156936924|ref|YP_001434720.1| - 0.019 14.4 0.0 0.045 13.3 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein BMC PF00936.14 gi|156936924|ref|YP_001434720.1| - 0.39 10.4 3.0 20 4.9 0.0 3.3 3 0 0 3 3 3 0 BMC domain TatD_DNase PF01026.16 gi|156936925|ref|YP_001434721.1| - 8.7e-42 143.0 0.1 2.6e-41 141.5 0.1 1.6 1 1 0 1 1 1 1 TatD related DNase HD_3 PF13023.1 gi|156936926|ref|YP_001434722.1| - 7.1e-11 42.1 0.0 1.2e-10 41.4 0.0 1.4 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|156936926|ref|YP_001434722.1| - 0.00024 21.0 0.2 0.00072 19.5 0.2 2.0 1 1 0 1 1 1 1 HD domain HD_2 PF12917.2 gi|156936926|ref|YP_001434722.1| - 0.016 15.0 0.0 0.03 14.1 0.0 1.7 1 1 0 1 1 1 0 HD containing hydrolase-like enzyme Fe-ADH PF00465.14 gi|156936927|ref|YP_001434723.1| - 1.9e-120 401.8 0.0 2.1e-120 401.7 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|156936927|ref|YP_001434723.1| - 1.3e-15 57.3 0.0 2.2e-08 33.7 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PAPS_reduct PF01507.14 gi|156936928|ref|YP_001434724.1| - 2.4e-26 92.5 0.0 4.1e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.8 gi|156936928|ref|YP_001434724.1| - 5.9e-06 25.7 0.0 8.6e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|156936928|ref|YP_001434724.1| - 0.0032 16.8 0.1 0.0087 15.4 0.1 1.7 1 1 0 1 1 1 1 ATP-binding region ATP_bind_3 PF01171.15 gi|156936928|ref|YP_001434724.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.4 1 1 0 1 1 1 1 PP-loop family Glyco_tranf_2_3 PF13641.1 gi|156936928|ref|YP_001434724.1| - 0.022 14.5 0.0 0.91 9.2 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Pex2_Pex12 PF04757.9 gi|156936928|ref|YP_001434724.1| - 0.052 12.9 0.0 0.085 12.2 0.0 1.3 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region Asn_synthase PF00733.16 gi|156936928|ref|YP_001434724.1| - 0.068 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Usp PF00582.21 gi|156936928|ref|YP_001434724.1| - 0.087 13.0 0.4 0.26 11.4 0.0 1.9 2 1 0 2 2 2 0 Universal stress protein family ubiquitin PF00240.18 gi|156936931|ref|YP_001434727.1| - 0.062 12.6 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin family Flagellin_D3 PF08884.6 gi|156936932|ref|YP_001434728.1| - 0.15 12.2 3.1 1.9 8.7 0.0 2.4 2 0 0 2 2 2 0 Flagellin D3 domain ThiF PF00899.16 gi|156936933|ref|YP_001434729.1| - 5.8e-21 74.7 0.0 7.5e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|156936933|ref|YP_001434729.1| - 0.00097 18.3 0.0 0.016 14.3 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.10 gi|156936933|ref|YP_001434729.1| - 0.003 16.5 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein TrkA_N PF02254.13 gi|156936933|ref|YP_001434729.1| - 0.029 14.3 0.1 0.068 13.1 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain UPF0547 PF10571.4 gi|156936933|ref|YP_001434729.1| - 0.035 13.7 0.9 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Saccharop_dh PF03435.13 gi|156936933|ref|YP_001434729.1| - 0.053 12.4 1.3 1.8 7.4 0.0 2.7 2 1 1 3 3 3 0 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|156936933|ref|YP_001434729.1| - 0.066 13.3 0.0 1.7 8.7 0.0 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|156936933|ref|YP_001434729.1| - 0.094 12.2 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.1 gi|156936933|ref|YP_001434729.1| - 0.12 12.3 0.2 16 5.3 0.1 2.3 2 0 0 2 2 2 0 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|156936933|ref|YP_001434729.1| - 0.13 12.6 0.1 0.33 11.2 0.1 1.8 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|156936933|ref|YP_001434729.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding zf-C3HC4_3 PF13920.1 gi|156936933|ref|YP_001434729.1| - 0.15 11.7 0.1 17 5.1 0.0 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Di19 PF05605.7 gi|156936933|ref|YP_001434729.1| - 0.17 12.0 0.2 26 5.0 0.0 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Peripla_BP_6 PF13458.1 gi|156936934|ref|YP_001434730.1| - 5.3e-36 124.6 0.9 6.7e-36 124.3 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|156936934|ref|YP_001434730.1| - 8.9e-32 110.2 0.2 1.1e-31 109.8 0.2 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|156936934|ref|YP_001434730.1| - 4.9e-05 22.2 0.0 0.00011 21.1 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein domain LppC PF04348.8 gi|156936934|ref|YP_001434730.1| - 0.0014 17.2 0.0 0.0022 16.6 0.0 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Toprim_2 PF13155.1 gi|156936934|ref|YP_001434730.1| - 0.063 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Toprim-like Peripla_BP_6 PF13458.1 gi|156936935|ref|YP_001434731.1| - 8.8e-32 110.7 0.0 1e-31 110.5 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|156936935|ref|YP_001434731.1| - 9.3e-26 90.4 0.0 1.4e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region PIN_3 PF13470.1 gi|156936937|ref|YP_001434733.1| - 0.00038 21.1 0.5 0.0016 19.1 0.3 1.9 1 1 0 1 1 1 1 PIN domain DUF148 PF02520.12 gi|156936938|ref|YP_001434734.1| - 0.11 12.3 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF148 Usp PF00582.21 gi|156936939|ref|YP_001434735.1| - 2.6e-30 105.4 0.7 2.9e-30 105.2 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|156936939|ref|YP_001434735.1| - 0.044 13.0 0.0 0.09 12.0 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel DEAD PF00270.24 gi|156936940|ref|YP_001434736.1| - 2.6e-17 62.8 0.0 6.1e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|156936940|ref|YP_001434736.1| - 3.5e-17 62.8 0.0 5.4e-16 58.9 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|156936940|ref|YP_001434736.1| - 2.2e-10 40.2 0.0 3.2e-09 36.5 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain T2SE PF00437.15 gi|156936940|ref|YP_001434736.1| - 0.02 13.8 0.0 0.07 12.0 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|156936940|ref|YP_001434736.1| - 0.021 14.2 0.0 20 4.4 0.0 3.4 3 1 0 4 4 4 0 AAA-like domain AAA_22 PF13401.1 gi|156936940|ref|YP_001434736.1| - 0.021 14.9 0.0 0.1 12.7 0.0 2.2 2 1 1 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|156936940|ref|YP_001434736.1| - 0.1 11.5 0.0 0.42 9.5 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|156936941|ref|YP_001434737.1| - 3.3e-33 114.8 0.0 4.9e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156936941|ref|YP_001434737.1| - 1.1e-13 51.8 0.1 2.3e-11 44.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|156936941|ref|YP_001434737.1| - 7e-06 25.3 0.0 9.9e-05 21.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|156936941|ref|YP_001434737.1| - 0.00052 20.4 0.0 0.0012 19.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|156936941|ref|YP_001434737.1| - 0.003 16.8 0.0 0.037 13.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|156936941|ref|YP_001434737.1| - 0.0063 16.7 0.0 6.2 7.0 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|156936941|ref|YP_001434737.1| - 0.0091 16.3 0.1 0.021 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|156936941|ref|YP_001434737.1| - 0.015 14.8 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|156936941|ref|YP_001434737.1| - 0.018 13.5 0.0 0.57 8.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|156936941|ref|YP_001434737.1| - 0.031 13.7 0.1 5.4 6.3 0.1 2.2 1 1 1 2 2 2 0 AAA-like domain SbcCD_C PF13558.1 gi|156936941|ref|YP_001434737.1| - 0.066 13.1 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.17 gi|156936941|ref|YP_001434737.1| - 0.078 12.4 0.2 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain BCA_ABC_TP_C PF12399.3 gi|156936941|ref|YP_001434737.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_25 PF13481.1 gi|156936941|ref|YP_001434737.1| - 0.12 11.7 0.1 1.2 8.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|156936942|ref|YP_001434738.1| - 7.2e-33 113.5 24.2 8.4e-33 113.2 16.7 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|156936942|ref|YP_001434738.1| - 2.1e-16 59.8 20.2 2.1e-16 59.8 14.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|156936942|ref|YP_001434738.1| - 0.034 13.3 21.8 0.047 12.8 15.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Coronavirus_5 PF05528.6 gi|156936943|ref|YP_001434739.1| - 0.071 12.9 0.0 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Coronavirus gene 5 protein PLDc_2 PF13091.1 gi|156936944|ref|YP_001434740.1| - 0.0016 18.1 0.0 0.0029 17.3 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain Regulator_TrmB PF11495.3 gi|156936944|ref|YP_001434740.1| - 0.009 15.0 0.3 0.28 10.1 0.1 2.1 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB tRNA-synt_1 PF00133.17 gi|156936945|ref|YP_001434741.1| - 1e-52 179.0 0.5 1.1e-39 135.9 0.1 3.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|156936945|ref|YP_001434741.1| - 1.7e-28 99.3 0.0 1.2e-13 50.4 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|156936945|ref|YP_001434741.1| - 2.7e-21 75.9 2.0 7.2e-21 74.5 1.4 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|156936945|ref|YP_001434741.1| - 7.2e-13 48.3 0.0 3.2e-09 36.3 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|156936945|ref|YP_001434741.1| - 1.3e-08 34.3 0.0 3.1e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|156936945|ref|YP_001434741.1| - 0.011 14.4 0.0 0.03 13.0 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class I (K) TSA PF03249.8 gi|156936945|ref|YP_001434741.1| - 0.2 10.1 0.2 6.7 5.1 0.0 2.2 2 0 0 2 2 2 0 Type specific antigen RNA_pol_Rpb6 PF01192.17 gi|156936946|ref|YP_001434742.1| - 4.5e-15 55.1 0.0 8.4e-15 54.2 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb6 DUF1761 PF08570.5 gi|156936947|ref|YP_001434743.1| - 1.1 9.2 9.2 6 6.9 2.7 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1761) Peptidase_S24 PF00717.18 gi|156936948|ref|YP_001434744.1| - 8.5e-09 34.9 0.3 1.3e-08 34.3 0.2 1.3 1 0 0 1 1 1 1 Peptidase S24-like DASH_Dad4 PF08650.5 gi|156936949|ref|YP_001434745.1| - 0.016 15.1 0.1 1.8 8.5 0.0 2.7 2 0 0 2 2 2 0 DASH complex subunit Dad4 DUF3289 PF11692.3 gi|156936949|ref|YP_001434745.1| - 0.047 12.9 0.3 0.066 12.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3289) DUF3818 PF12825.2 gi|156936949|ref|YP_001434745.1| - 0.11 11.1 4.6 0.058 12.0 0.8 1.9 1 1 1 2 2 2 0 Domain of unknown function in PX-proteins (DUF3818) SNO PF01174.14 gi|156936950|ref|YP_001434746.1| - 1.2e-46 158.7 0.0 1.3e-46 158.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|156936950|ref|YP_001434746.1| - 2e-10 40.4 0.0 4.6e-10 39.3 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|156936950|ref|YP_001434746.1| - 2.7e-09 36.9 0.0 3.7e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|156936950|ref|YP_001434746.1| - 2.6e-08 33.5 0.1 5.4e-07 29.2 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|156936950|ref|YP_001434746.1| - 0.01 15.3 0.0 0.02 14.3 0.0 1.5 2 0 0 2 2 2 0 DJ-1/PfpI family SOR_SNZ PF01680.12 gi|156936951|ref|YP_001434747.1| - 1.3e-97 325.4 7.0 1.7e-97 325.0 4.9 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|156936951|ref|YP_001434747.1| - 1.3e-07 30.9 1.4 6e-06 25.5 0.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|156936951|ref|YP_001434747.1| - 0.00015 20.7 0.2 0.063 12.2 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|156936951|ref|YP_001434747.1| - 0.00019 20.7 5.2 0.00036 19.7 0.2 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|156936951|ref|YP_001434747.1| - 0.00022 20.5 1.1 0.21 10.8 0.0 3.4 2 2 1 3 3 3 2 Histidine biosynthesis protein IGPS PF00218.16 gi|156936951|ref|YP_001434747.1| - 0.00037 19.6 0.0 0.0082 15.2 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|156936951|ref|YP_001434747.1| - 0.0016 17.3 0.2 0.26 10.0 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) Trp_syntA PF00290.15 gi|156936951|ref|YP_001434747.1| - 0.0038 15.7 0.0 0.007 14.9 0.0 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain OMPdecase PF00215.19 gi|156936951|ref|YP_001434747.1| - 0.007 15.7 1.0 0.5 9.7 0.0 2.5 2 1 1 3 3 3 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|156936951|ref|YP_001434747.1| - 0.043 13.0 1.0 0.21 10.7 0.0 2.4 3 0 0 3 3 3 0 PcrB family LSM PF01423.17 gi|156936952|ref|YP_001434748.1| - 2.2e-15 55.9 0.0 2.7e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|156936952|ref|YP_001434748.1| - 0.023 14.6 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain Rad10 PF03834.9 gi|156936952|ref|YP_001434748.1| - 0.026 14.2 0.2 0.037 13.7 0.1 1.5 1 1 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) AdoMet_Synthase PF01941.14 gi|156936953|ref|YP_001434749.1| - 2.5e-170 566.2 2.8 2.8e-170 566.0 1.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF131 PF01998.12 gi|156936954|ref|YP_001434750.1| - 0.00071 18.8 15.6 0.00071 18.8 10.8 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 AA_permease_2 PF13520.1 gi|156936954|ref|YP_001434750.1| - 0.031 12.8 10.7 0.038 12.5 7.4 1.0 1 0 0 1 1 1 0 Amino acid permease Virul_fac_BrkB PF03631.10 gi|156936954|ref|YP_001434750.1| - 0.11 11.8 7.4 0.14 11.5 5.1 1.1 1 0 0 1 1 1 0 Virulence factor BrkB SUR7 PF06687.7 gi|156936954|ref|YP_001434750.1| - 1.4 8.4 3.7 1.9 8.0 2.6 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF2207 PF09972.4 gi|156936954|ref|YP_001434750.1| - 1.9 6.9 7.1 2.2 6.7 4.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CbiN PF02553.10 gi|156936954|ref|YP_001434750.1| - 2.2 8.3 4.2 9.4 6.3 1.1 2.1 2 0 0 2 2 2 0 Cobalt transport protein component CbiN CRPA PF05745.6 gi|156936954|ref|YP_001434750.1| - 2.6 7.8 8.5 0.89 9.3 4.1 1.5 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF4131 PF13567.1 gi|156936954|ref|YP_001434750.1| - 2.8 7.3 9.8 7.2 5.9 6.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3955 PF13127.1 gi|156936954|ref|YP_001434750.1| - 3.6 7.1 15.1 0.87 9.1 4.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) NfeD PF01957.13 gi|156936954|ref|YP_001434750.1| - 4.4 7.4 14.3 5.1 7.2 9.9 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding Baculo_11_kDa PF06143.6 gi|156936954|ref|YP_001434750.1| - 5.1 6.5 9.3 2.6 7.4 0.4 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF872 PF05915.7 gi|156936954|ref|YP_001434750.1| - 5.3 6.9 6.9 0.3 10.9 0.8 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) MTS PF05175.9 gi|156936955|ref|YP_001434751.1| - 1.4e-41 141.7 0.0 1.6e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|156936955|ref|YP_001434751.1| - 1e-16 60.9 0.0 1.2e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156936955|ref|YP_001434751.1| - 2.8e-16 59.5 0.0 3.8e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|156936955|ref|YP_001434751.1| - 3.2e-14 52.7 0.0 4.3e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|156936955|ref|YP_001434751.1| - 7.3e-14 52.2 0.0 1e-13 51.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|156936955|ref|YP_001434751.1| - 3.1e-09 37.2 0.0 4.1e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|156936955|ref|YP_001434751.1| - 6.2e-08 32.9 0.0 8.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|156936955|ref|YP_001434751.1| - 6.3e-06 25.7 0.1 9.5e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|156936955|ref|YP_001434751.1| - 1.3e-05 25.6 0.0 1.8e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|156936955|ref|YP_001434751.1| - 3.4e-05 23.6 0.0 4.1e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|156936955|ref|YP_001434751.1| - 4.1e-05 23.2 0.0 5.1e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.14 gi|156936955|ref|YP_001434751.1| - 6.2e-05 22.6 0.0 0.00058 19.4 0.0 1.9 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|156936955|ref|YP_001434751.1| - 0.00012 21.2 0.0 0.00015 20.9 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|156936955|ref|YP_001434751.1| - 0.00019 20.5 0.0 0.00029 19.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase FmrO PF07091.6 gi|156936955|ref|YP_001434751.1| - 0.00074 18.5 0.0 0.0011 18.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) RrnaAD PF00398.15 gi|156936955|ref|YP_001434751.1| - 0.0015 17.6 0.0 0.0019 17.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|156936955|ref|YP_001434751.1| - 0.0017 17.9 0.0 0.0056 16.2 0.0 1.6 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|156936955|ref|YP_001434751.1| - 0.0022 17.7 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|156936955|ref|YP_001434751.1| - 0.0052 15.9 0.0 0.0074 15.4 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TRM PF02005.11 gi|156936955|ref|YP_001434751.1| - 0.0087 15.0 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Ubie_methyltran PF01209.13 gi|156936955|ref|YP_001434751.1| - 0.016 14.3 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.5 gi|156936955|ref|YP_001434751.1| - 0.024 14.2 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.13 gi|156936955|ref|YP_001434751.1| - 0.057 12.6 0.0 0.076 12.1 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase MetW PF07021.7 gi|156936955|ref|YP_001434751.1| - 0.069 12.5 0.0 0.086 12.2 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW ABC_tran PF00005.22 gi|156936956|ref|YP_001434752.1| - 9.8e-26 90.6 0.0 1.2e-25 90.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156936956|ref|YP_001434752.1| - 5.3e-09 36.4 1.0 1e-06 28.9 0.7 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|156936956|ref|YP_001434752.1| - 0.0055 16.5 0.0 0.013 15.4 0.0 1.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|156936956|ref|YP_001434752.1| - 0.0092 15.9 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|156936956|ref|YP_001434752.1| - 0.01 16.2 0.1 0.023 15.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|156936956|ref|YP_001434752.1| - 0.019 14.7 0.0 0.079 12.7 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|156936956|ref|YP_001434752.1| - 0.024 14.5 0.0 0.12 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|156936956|ref|YP_001434752.1| - 0.024 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|156936956|ref|YP_001434752.1| - 0.034 13.2 0.0 2.3 7.1 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain UPF0079 PF02367.12 gi|156936956|ref|YP_001434752.1| - 0.038 13.6 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|156936956|ref|YP_001434752.1| - 0.046 13.2 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|156936956|ref|YP_001434752.1| - 0.087 13.6 0.4 0.21 12.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|156936956|ref|YP_001434752.1| - 0.089 12.0 0.0 0.56 9.4 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|156936956|ref|YP_001434752.1| - 0.19 11.8 0.4 1.1 9.4 0.3 2.1 1 1 0 1 1 1 0 AAA domain MoeA_N PF03453.12 gi|156936957|ref|YP_001434753.1| - 6.8e-48 162.0 0.0 1.4e-47 161.0 0.0 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|156936957|ref|YP_001434753.1| - 6.4e-31 106.6 0.0 1.4e-30 105.5 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|156936957|ref|YP_001434753.1| - 2.3e-12 46.6 0.2 4.3e-10 39.4 0.0 3.4 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) PBP_like PF12727.2 gi|156936957|ref|YP_001434753.1| - 9.8e-06 24.6 0.0 2.1e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.2 gi|156936957|ref|YP_001434753.1| - 0.0038 16.6 0.0 0.0099 15.2 0.0 1.7 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|156936957|ref|YP_001434753.1| - 0.0088 15.1 0.0 0.019 14.0 0.0 1.5 1 0 0 1 1 1 1 LysR substrate binding domain ABC_tran PF00005.22 gi|156936958|ref|YP_001434754.1| - 2.3e-32 112.1 0.0 3.2e-32 111.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156936958|ref|YP_001434754.1| - 4.8e-11 43.1 0.0 2.4e-06 27.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156936958|ref|YP_001434754.1| - 3.1e-07 29.8 0.0 3.7e-05 23.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|156936958|ref|YP_001434754.1| - 2.1e-05 24.4 1.2 0.00021 21.1 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|156936958|ref|YP_001434754.1| - 3.8e-05 23.9 0.0 0.02 15.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|156936958|ref|YP_001434754.1| - 9.1e-05 22.5 0.7 0.00016 21.6 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|156936958|ref|YP_001434754.1| - 0.00011 21.6 1.2 0.0013 18.1 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|156936958|ref|YP_001434754.1| - 0.00013 21.3 0.2 0.00024 20.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|156936958|ref|YP_001434754.1| - 0.00015 21.5 0.1 0.37 10.4 0.0 2.1 2 0 0 2 2 2 2 NTPase AAA_19 PF13245.1 gi|156936958|ref|YP_001434754.1| - 0.00016 21.3 0.6 0.0076 15.9 0.1 2.5 2 0 0 2 2 2 1 Part of AAA domain SbcCD_C PF13558.1 gi|156936958|ref|YP_001434754.1| - 0.0013 18.6 0.2 0.012 15.5 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|156936958|ref|YP_001434754.1| - 0.0015 17.6 0.0 0.18 10.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|156936958|ref|YP_001434754.1| - 0.0024 18.0 0.5 0.0097 16.0 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|156936958|ref|YP_001434754.1| - 0.0031 17.5 0.1 0.019 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|156936958|ref|YP_001434754.1| - 0.0048 16.0 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|156936958|ref|YP_001434754.1| - 0.006 17.3 0.2 0.0095 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|156936958|ref|YP_001434754.1| - 0.0064 15.9 0.4 0.021 14.2 0.2 1.8 1 1 0 2 2 2 1 AAA-like domain AAA_24 PF13479.1 gi|156936958|ref|YP_001434754.1| - 0.0092 15.5 0.2 0.45 10.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|156936958|ref|YP_001434754.1| - 0.014 15.0 0.1 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|156936958|ref|YP_001434754.1| - 0.021 14.7 0.0 1.5 8.7 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|156936958|ref|YP_001434754.1| - 0.029 12.8 0.0 0.9 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|156936958|ref|YP_001434754.1| - 0.048 12.1 0.1 0.069 11.6 0.1 1.2 1 0 0 1 1 1 0 RNA12 protein NACHT PF05729.7 gi|156936958|ref|YP_001434754.1| - 0.057 13.0 0.1 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|156936958|ref|YP_001434754.1| - 0.061 13.0 0.1 0.13 11.9 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_23 PF13476.1 gi|156936958|ref|YP_001434754.1| - 0.066 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|156936958|ref|YP_001434754.1| - 0.074 11.9 0.1 0.26 10.1 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein PseudoU_synth_2 PF00849.17 gi|156936958|ref|YP_001434754.1| - 0.087 12.6 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA pseudouridylate synthase FtsK_SpoIIIE PF01580.13 gi|156936958|ref|YP_001434754.1| - 0.091 12.2 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|156936958|ref|YP_001434754.1| - 0.1 13.1 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|156936958|ref|YP_001434754.1| - 0.13 12.0 0.1 0.51 10.0 0.0 2.1 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|156936958|ref|YP_001434754.1| - 0.13 12.0 0.1 2.4 7.9 0.0 2.1 2 0 0 2 2 2 0 Dynamin family Mg_chelatase PF01078.16 gi|156936958|ref|YP_001434754.1| - 0.14 11.3 0.1 2.5 7.2 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|156936958|ref|YP_001434754.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.7 2 0 0 2 2 1 0 RNA helicase CbiA PF01656.18 gi|156936958|ref|YP_001434754.1| - 0.35 10.2 1.8 5.8 6.2 0.0 2.4 2 1 1 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain DBP10CT PF08147.7 gi|156936959|ref|YP_001434755.1| - 0.045 13.5 0.2 1.5 8.6 0.0 3.1 4 0 0 4 4 4 0 DBP10CT (NUC160) domain GARS_A PF01071.14 gi|156936960|ref|YP_001434756.1| - 1.1e-42 145.8 0.4 1.9e-42 145.0 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|156936960|ref|YP_001434756.1| - 1.8e-22 79.7 0.1 3.6e-22 78.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|156936960|ref|YP_001434756.1| - 6.1e-17 61.5 0.0 8.1e-16 57.9 0.0 2.4 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|156936960|ref|YP_001434756.1| - 4.2e-13 49.4 0.1 1.5e-12 47.6 0.1 1.9 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|156936960|ref|YP_001434756.1| - 1.5e-09 37.0 0.1 2.7e-09 36.2 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|156936960|ref|YP_001434756.1| - 7.7e-05 22.6 0.1 0.00022 21.1 0.1 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|156936960|ref|YP_001434756.1| - 0.0059 15.7 0.5 0.45 9.5 0.1 2.2 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.1 gi|156936960|ref|YP_001434756.1| - 0.016 13.9 0.0 0.028 13.2 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp CPSase_L_D2 PF02786.12 gi|156936960|ref|YP_001434756.1| - 0.017 14.4 0.1 0.038 13.2 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_TupA PF14305.1 gi|156936960|ref|YP_001434756.1| - 0.085 12.1 0.4 0.14 11.4 0.3 1.2 1 0 0 1 1 1 0 TupA-like ATPgrasp MMR_HSR1 PF01926.18 gi|156936962|ref|YP_001434758.1| - 2.2e-13 50.1 0.0 2.8e-10 40.1 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|156936962|ref|YP_001434758.1| - 3e-07 29.8 0.1 0.015 14.6 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|156936962|ref|YP_001434758.1| - 5.6e-07 29.1 0.0 0.00023 20.6 0.0 2.4 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|156936962|ref|YP_001434758.1| - 7.3e-05 22.6 2.6 0.0029 17.4 0.1 2.9 3 0 0 3 3 3 1 Dynamin family DUF258 PF03193.11 gi|156936962|ref|YP_001434758.1| - 9.5e-05 21.6 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 IIGP PF05049.8 gi|156936962|ref|YP_001434758.1| - 0.0097 14.7 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 1 Interferon-inducible GTPase (IIGP) AAA_17 PF13207.1 gi|156936962|ref|YP_001434758.1| - 0.021 15.6 1.8 0.034 14.9 0.3 2.3 2 1 0 2 2 2 0 AAA domain GBP PF02263.14 gi|156936962|ref|YP_001434758.1| - 0.022 13.8 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, N-terminal domain AAA_16 PF13191.1 gi|156936962|ref|YP_001434758.1| - 0.029 14.3 0.2 0.062 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|156936962|ref|YP_001434758.1| - 0.036 13.7 0.2 0.072 12.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|156936962|ref|YP_001434758.1| - 0.048 13.2 0.0 1.1 8.7 0.1 2.6 2 1 1 3 3 3 0 AAA domain ArgK PF03308.11 gi|156936962|ref|YP_001434758.1| - 0.058 12.1 0.1 0.12 11.1 0.1 1.5 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|156936962|ref|YP_001434758.1| - 0.12 12.2 1.0 0.62 9.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|156936962|ref|YP_001434758.1| - 0.19 11.1 0.1 5 6.5 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RimK PF08443.6 gi|156936963|ref|YP_001434759.1| - 5.3e-29 101.0 0.0 6.6e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|156936963|ref|YP_001434759.1| - 2.2e-13 50.3 0.0 3.6e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|156936963|ref|YP_001434759.1| - 8.9e-10 38.6 0.1 2.7e-09 37.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|156936963|ref|YP_001434759.1| - 1e-08 34.5 0.0 1.5e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|156936963|ref|YP_001434759.1| - 5.7e-07 28.5 0.0 4.9e-06 25.5 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|156936963|ref|YP_001434759.1| - 0.017 14.5 0.0 1.5 8.1 0.0 2.5 2 1 0 2 2 2 0 D-ala D-ala ligase C-terminus Nitro_FeMo-Co PF02579.12 gi|156936964|ref|YP_001434760.1| - 1.2e-08 34.8 0.1 1.4e-08 34.6 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Dehydratase_SU PF02287.10 gi|156936965|ref|YP_001434761.1| - 0.035 13.8 1.3 1.2 8.8 0.1 2.3 1 1 1 2 2 2 0 Dehydratase small subunit FlgN PF05130.7 gi|156936965|ref|YP_001434761.1| - 0.099 12.8 0.3 0.13 12.5 0.2 1.2 1 0 0 1 1 1 0 FlgN protein NPH3 PF03000.9 gi|156936965|ref|YP_001434761.1| - 0.1 12.1 0.1 0.13 11.7 0.1 1.1 1 0 0 1 1 1 0 NPH3 family SIS PF01380.17 gi|156936966|ref|YP_001434762.1| - 3.5e-41 139.8 0.0 4.2e-24 84.6 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|156936966|ref|YP_001434762.1| - 5.1e-27 94.4 0.2 2.1e-26 92.4 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|156936966|ref|YP_001434762.1| - 1.7e-25 89.5 0.0 9e-19 67.3 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|156936966|ref|YP_001434762.1| - 5.5e-21 74.5 0.0 2.1e-20 72.7 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|156936966|ref|YP_001434762.1| - 1.8e-07 30.1 0.0 2.5e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.4 gi|156936966|ref|YP_001434762.1| - 5.7e-05 22.8 0.0 0.00024 20.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region SIS_2 PF13580.1 gi|156936966|ref|YP_001434762.1| - 0.002 17.8 0.3 0.049 13.3 0.1 2.4 2 0 0 2 2 2 1 SIS domain Fer4 PF00037.22 gi|156936967|ref|YP_001434763.1| - 1.9e-09 36.7 15.2 5.2e-05 22.6 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156936967|ref|YP_001434763.1| - 2e-09 37.6 5.0 0.00018 21.7 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156936967|ref|YP_001434763.1| - 1.1e-08 35.1 4.6 0.0016 18.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156936967|ref|YP_001434763.1| - 4e-08 33.8 8.3 0.00064 20.4 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|156936967|ref|YP_001434763.1| - 5.7e-07 29.1 12.5 0.00034 20.3 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156936967|ref|YP_001434763.1| - 5.4e-06 26.1 9.4 9.2e-06 25.3 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|156936967|ref|YP_001434763.1| - 2.9e-05 24.2 20.6 0.012 16.1 6.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|156936967|ref|YP_001434763.1| - 6.1e-05 22.8 9.7 0.00012 21.8 6.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156936967|ref|YP_001434763.1| - 0.00011 21.8 12.6 0.029 14.2 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|156936967|ref|YP_001434763.1| - 0.0032 17.8 11.5 0.018 15.4 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156936967|ref|YP_001434763.1| - 0.018 15.3 12.6 0.074 13.4 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_28 PF13521.1 gi|156936967|ref|YP_001434763.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Fer4_8 PF13183.1 gi|156936967|ref|YP_001434763.1| - 0.19 11.7 12.1 2.1 8.4 1.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156936967|ref|YP_001434763.1| - 0.26 11.6 13.4 1.6 9.1 2.0 2.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156936967|ref|YP_001434763.1| - 0.75 10.4 14.8 2.9 8.5 2.8 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|156936968|ref|YP_001434764.1| - 1.4e-10 40.2 8.4 9.7e-05 21.8 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|156936968|ref|YP_001434764.1| - 1.5e-09 37.2 10.5 8.7e-05 22.2 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156936968|ref|YP_001434764.1| - 7.6e-08 32.6 9.3 1.8e-07 31.4 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156936968|ref|YP_001434764.1| - 9.3e-08 32.7 4.6 0.0047 17.6 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|156936968|ref|YP_001434764.1| - 3.2e-07 30.1 7.4 7e-07 29.0 5.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156936968|ref|YP_001434764.1| - 3.3e-07 29.9 10.4 5.2e-07 29.3 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156936968|ref|YP_001434764.1| - 9.3e-07 29.0 6.5 1.6e-06 28.2 4.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156936968|ref|YP_001434764.1| - 3.3e-05 23.5 11.8 0.00053 19.7 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156936968|ref|YP_001434764.1| - 0.00014 21.9 13.0 0.0053 17.0 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156936968|ref|YP_001434764.1| - 0.0036 17.6 10.6 0.28 11.5 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156936968|ref|YP_001434764.1| - 0.0077 16.2 11.5 0.2 11.7 8.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|156936968|ref|YP_001434764.1| - 0.0081 16.0 4.0 0.014 15.2 2.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|156936968|ref|YP_001434764.1| - 0.0084 16.4 12.1 0.089 13.1 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S single cluster domain AAA_17 PF13207.1 gi|156936968|ref|YP_001434764.1| - 0.03 15.1 0.1 0.8 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_3 PF12798.2 gi|156936968|ref|YP_001434764.1| - 0.038 14.5 16.7 1 10.1 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_33 PF13671.1 gi|156936968|ref|YP_001434764.1| - 0.1 12.4 0.0 0.32 10.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain Fer4_15 PF13459.1 gi|156936968|ref|YP_001434764.1| - 0.62 10.6 10.3 1.3 9.5 1.2 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|156936968|ref|YP_001434764.1| - 1.1 9.7 11.3 0.73 10.2 1.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain TNFR_c6 PF00020.13 gi|156936968|ref|YP_001434764.1| - 2.6 8.1 7.1 7.4 6.7 0.4 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Alba PF01918.16 gi|156936969|ref|YP_001434765.1| - 4.3e-19 67.8 0.2 5.5e-19 67.5 0.1 1.1 1 0 0 1 1 1 1 Alba His_biosynth PF00977.16 gi|156936972|ref|YP_001434768.1| - 3.9e-54 183.3 0.0 4.4e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|156936972|ref|YP_001434768.1| - 1.9e-06 27.3 0.7 0.0001 21.6 0.1 2.1 1 1 1 2 2 2 2 PcrB family IMPDH PF00478.20 gi|156936972|ref|YP_001434768.1| - 0.00039 19.4 0.0 0.0015 17.4 0.0 1.8 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|156936972|ref|YP_001434768.1| - 0.002 17.2 0.0 0.27 10.3 0.0 2.1 2 0 0 2 2 2 2 Ribulose-phosphate 3 epimerase family DUF556 PF04476.8 gi|156936972|ref|YP_001434768.1| - 0.043 13.0 0.0 0.87 8.7 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF556) NanE PF04131.9 gi|156936972|ref|YP_001434768.1| - 0.079 11.9 0.0 1.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|156936972|ref|YP_001434768.1| - 0.15 10.6 0.1 4.8 5.6 0.0 2.2 2 0 0 2 2 2 0 Tryptophan synthase alpha chain RIO1 PF01163.17 gi|156936973|ref|YP_001434769.1| - 2.3e-09 36.8 0.0 4.1e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|156936973|ref|YP_001434769.1| - 4.4e-08 32.5 0.0 7.1e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|156936973|ref|YP_001434769.1| - 4.7e-07 29.7 0.0 0.00019 21.2 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|156936973|ref|YP_001434769.1| - 6.6e-07 28.5 0.4 2.1e-05 23.6 0.3 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|156936973|ref|YP_001434769.1| - 0.0012 18.0 0.0 0.0054 15.8 0.0 2.0 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.6 gi|156936973|ref|YP_001434769.1| - 0.0024 17.1 0.1 0.0028 16.8 0.1 1.3 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Methyltransf_28 PF02636.12 gi|156936973|ref|YP_001434769.1| - 0.13 11.6 0.0 0.28 10.5 0.0 1.5 1 1 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Ham1p_like PF01725.11 gi|156936974|ref|YP_001434770.1| - 1e-53 181.5 0.0 1.2e-53 181.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Ribosomal_S13 PF00416.17 gi|156936975|ref|YP_001434771.1| - 2.3e-29 101.9 0.0 2.8e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.1 gi|156936975|ref|YP_001434771.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain S4 PF01479.20 gi|156936976|ref|YP_001434772.1| - 5.6e-18 64.1 0.2 1.2e-17 62.9 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|156936976|ref|YP_001434772.1| - 5.5e-08 33.0 0.6 9.5e-08 32.3 0.2 1.6 2 0 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|156936977|ref|YP_001434773.1| - 1.3e-41 141.1 0.2 1.5e-41 140.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|156936978|ref|YP_001434774.1| - 3.7e-24 85.0 0.0 8.7e-23 80.6 0.0 2.3 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|156936978|ref|YP_001434774.1| - 4.4e-10 38.5 0.0 5.4e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18e PF00828.14 gi|156936979|ref|YP_001434775.1| - 3.7e-16 59.6 0.2 4.3e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|156936980|ref|YP_001434776.1| - 2.7e-30 105.0 0.2 3.7e-30 104.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|156936981|ref|YP_001434777.1| - 1.3e-33 115.7 0.3 1.6e-33 115.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|156936982|ref|YP_001434778.1| - 1.5e-24 85.7 0.3 1.7e-24 85.5 0.2 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S2 PF00318.15 gi|156936983|ref|YP_001434779.1| - 2.4e-42 144.5 0.2 8.2e-21 74.1 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 IalB PF06776.7 gi|156936983|ref|YP_001434779.1| - 0.11 12.3 0.0 6.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Invasion associated locus B (IalB) protein Fer4_15 PF13459.1 gi|156936984|ref|YP_001434780.1| - 2.5e-19 69.5 4.5 2.9e-19 69.3 3.1 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|156936984|ref|YP_001434780.1| - 7.4e-19 67.8 5.1 9.1e-19 67.6 3.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|156936984|ref|YP_001434780.1| - 0.023 14.2 5.7 0.078 12.6 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156936984|ref|YP_001434780.1| - 0.029 14.6 2.7 0.054 13.7 1.9 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156936984|ref|YP_001434780.1| - 0.04 13.7 3.0 0.075 12.8 2.1 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|156936984|ref|YP_001434780.1| - 0.085 12.6 3.8 0.2 11.5 2.6 1.6 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|156936984|ref|YP_001434780.1| - 0.33 10.8 5.3 2.5 8.0 3.8 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156936984|ref|YP_001434780.1| - 0.4 11.0 4.7 2.3 8.6 0.5 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156936984|ref|YP_001434780.1| - 0.7 9.8 6.8 0.61 10.0 0.3 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Ribosomal_L24e PF01246.15 gi|156936985|ref|YP_001434781.1| - 0.0015 18.3 0.3 0.0021 17.8 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L24e Ta0938 PF11494.3 gi|156936985|ref|YP_001434781.1| - 0.068 13.2 0.0 0.068 13.2 0.0 1.2 1 0 0 1 1 1 0 Ta0938 zf-C2HC_2 PF13913.1 gi|156936985|ref|YP_001434781.1| - 5.8 6.7 5.8 1 9.0 0.7 2.0 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DEAD PF00270.24 gi|156936986|ref|YP_001434782.1| - 1.3e-32 112.6 0.0 4.3e-30 104.4 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|156936986|ref|YP_001434782.1| - 9.2e-20 71.1 0.0 7.4e-18 64.9 0.0 2.8 1 1 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|156936986|ref|YP_001434782.1| - 3.1e-18 65.4 0.0 8.8e-18 63.9 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|156936986|ref|YP_001434782.1| - 3.7e-08 33.4 0.0 6e-07 29.4 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|156936986|ref|YP_001434782.1| - 7.3e-05 21.7 0.0 0.00015 20.6 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|156936986|ref|YP_001434782.1| - 0.00013 22.1 0.0 0.18 11.9 0.0 3.2 2 1 0 2 2 2 1 AAA domain HTH_20 PF12840.2 gi|156936986|ref|YP_001434782.1| - 0.00087 19.0 0.1 0.0023 17.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|156936986|ref|YP_001434782.1| - 0.00092 18.8 0.0 0.0034 16.9 0.0 2.0 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|156936986|ref|YP_001434782.1| - 0.019 14.4 0.1 0.087 12.3 0.0 2.2 1 0 0 1 1 1 0 Sigma-70, region 4 UvrD-helicase PF00580.16 gi|156936986|ref|YP_001434782.1| - 0.056 12.7 0.4 0.34 10.1 0.0 2.4 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain HTH_Crp_2 PF13545.1 gi|156936986|ref|YP_001434782.1| - 0.059 13.1 0.0 0.61 9.9 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Citrate_synt PF00285.16 gi|156936986|ref|YP_001434782.1| - 0.15 10.7 0.1 0.35 9.5 0.0 1.6 2 0 0 2 2 2 0 Citrate synthase DUF520 PF04461.8 gi|156936986|ref|YP_001434782.1| - 1.1 9.1 6.6 0.46 10.3 0.9 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF520) TrkH PF02386.11 gi|156936987|ref|YP_001434783.1| - 7e-35 120.2 19.7 7e-35 120.2 13.7 2.7 2 1 0 2 2 2 2 Cation transport protein Ribosomal_S25 PF03297.10 gi|156936988|ref|YP_001434784.1| - 2.6e-10 40.2 1.2 3.9e-10 39.6 0.8 1.3 1 0 0 1 1 1 1 S25 ribosomal protein HTH_24 PF13412.1 gi|156936988|ref|YP_001434784.1| - 0.00032 20.0 1.3 0.00054 19.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding EAP30 PF04157.11 gi|156936988|ref|YP_001434784.1| - 0.00097 18.3 0.4 0.014 14.5 0.0 2.0 1 1 1 2 2 2 1 EAP30/Vps36 family HTH_Crp_2 PF13545.1 gi|156936988|ref|YP_001434784.1| - 0.014 15.1 2.2 0.11 12.3 0.0 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|156936988|ref|YP_001434784.1| - 0.02 14.4 0.0 0.053 13.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|156936988|ref|YP_001434784.1| - 0.037 13.7 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|156936988|ref|YP_001434784.1| - 0.064 12.9 0.6 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_29 PF13551.1 gi|156936988|ref|YP_001434784.1| - 0.075 13.1 0.4 0.78 9.9 0.0 2.1 1 1 1 2 2 2 0 Winged helix-turn helix YscJ_FliF PF01514.12 gi|156936988|ref|YP_001434784.1| - 0.08 12.0 0.4 1.1 8.3 0.2 2.0 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family HTH_28 PF13518.1 gi|156936988|ref|YP_001434784.1| - 0.081 12.9 0.9 1.1 9.3 0.6 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|156936988|ref|YP_001434784.1| - 0.34 10.6 2.4 0.35 10.5 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB IMS_C PF11799.3 gi|156936988|ref|YP_001434784.1| - 0.37 10.7 2.0 1.5 8.7 1.4 1.9 1 1 0 1 1 1 0 impB/mucB/samB family C-terminal domain COMP PF11598.3 gi|156936988|ref|YP_001434784.1| - 0.56 10.3 2.9 1.4 9.0 2.0 1.6 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein PAC2 PF09754.4 gi|156936989|ref|YP_001434785.1| - 1e-40 139.9 0.0 1.2e-40 139.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family HSP20 PF00011.16 gi|156936990|ref|YP_001434786.1| - 0.006 16.4 0.1 0.007 16.2 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Staphopain_pro PF14731.1 gi|156936990|ref|YP_001434786.1| - 0.02 14.6 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Staphopain proregion tRNA-synt_2c PF01411.14 gi|156936991|ref|YP_001434787.1| - 1.6e-117 393.1 0.0 3e-117 392.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|156936991|ref|YP_001434787.1| - 2.2e-13 49.8 0.4 5e-13 48.7 0.3 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|156936991|ref|YP_001434787.1| - 0.0072 15.9 0.4 0.028 14.1 0.3 2.1 1 0 0 1 1 1 1 DHHA1 domain DUF1043 PF06295.7 gi|156936991|ref|YP_001434787.1| - 0.018 14.6 0.2 0.05 13.2 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) Apolipoprotein PF01442.13 gi|156936991|ref|YP_001434787.1| - 0.16 11.4 3.2 0.19 11.1 0.9 1.9 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Med2 PF11214.3 gi|156936992|ref|YP_001434788.1| - 0.094 12.7 0.0 0.29 11.1 0.0 1.8 2 0 0 2 2 2 0 Mediator complex subunit 2 Radical_SAM PF04055.16 gi|156936993|ref|YP_001434789.1| - 3.5e-18 66.3 0.4 1e-17 64.7 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|156936993|ref|YP_001434789.1| - 0.0078 16.2 0.0 0.03 14.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain AA_kinase PF00696.23 gi|156936994|ref|YP_001434790.1| - 5.9e-51 173.3 0.0 1.3e-50 172.1 0.0 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|156936994|ref|YP_001434790.1| - 2.9e-05 23.5 6.0 0.00016 21.1 1.2 3.2 3 0 0 3 3 3 1 ACT domain TMF_TATA_bd PF12325.3 gi|156936994|ref|YP_001434790.1| - 0.0014 18.2 0.1 0.0027 17.4 0.1 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding FumaraseC_C PF10415.4 gi|156936994|ref|YP_001434790.1| - 0.042 13.9 0.1 0.13 12.2 0.0 1.9 1 0 0 1 1 1 0 Fumarase C C-terminus Phasin PF05597.6 gi|156936994|ref|YP_001434790.1| - 0.078 12.7 0.1 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Asparaginase PF00710.15 gi|156936996|ref|YP_001434792.1| - 1.1e-92 310.3 0.0 1.3e-92 310.0 0.0 1.0 1 0 0 1 1 1 1 Asparaginase DNA_binding_1 PF01035.15 gi|156936998|ref|YP_001434794.1| - 5e-23 80.6 0.0 5.9e-23 80.4 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AAA_3 PF07726.6 gi|156937000|ref|YP_001434796.1| - 1.2e-58 196.4 0.1 2.1e-58 195.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|156937000|ref|YP_001434796.1| - 4.1e-16 58.9 0.0 9.3e-16 57.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|156937000|ref|YP_001434796.1| - 5.7e-07 28.6 0.1 5.8e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|156937000|ref|YP_001434796.1| - 2.9e-06 26.8 0.0 7.8e-06 25.4 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|156937000|ref|YP_001434796.1| - 5.8e-06 26.5 0.1 2.4e-05 24.5 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|156937000|ref|YP_001434796.1| - 4.8e-05 22.5 0.5 0.00049 19.2 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|156937000|ref|YP_001434796.1| - 8.9e-05 21.7 0.2 0.0096 15.1 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|156937000|ref|YP_001434796.1| - 0.085 12.9 0.0 3.7 7.7 0.0 2.9 2 1 1 3 3 3 0 AAA domain Transglut_core PF01841.14 gi|156937001|ref|YP_001434797.1| - 1.5e-18 67.0 0.2 2.8e-18 66.1 0.1 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|156937001|ref|YP_001434797.1| - 0.051 13.3 1.2 0.12 12.1 0.0 2.2 2 0 0 2 2 2 0 Transglutaminase-like superfamily DUF364 PF04016.7 gi|156937002|ref|YP_001434798.1| - 4.3e-29 100.7 0.0 5.6e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|156937002|ref|YP_001434798.1| - 6.7e-08 32.5 0.0 1.4e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) Cas_VVA1548 PF09652.5 gi|156937002|ref|YP_001434798.1| - 0.091 12.7 0.1 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative CRISPR-associated protein (Cas_VVA1548) DUF2791 PF10923.3 gi|156937003|ref|YP_001434799.1| - 0.1 11.1 0.2 0.26 9.8 0.0 1.6 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) DUF2889 PF11136.3 gi|156937003|ref|YP_001434799.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2889) RNase_PH PF01138.16 gi|156937004|ref|YP_001434800.1| - 3.6e-30 104.9 0.0 5.1e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|156937004|ref|YP_001434800.1| - 3.8e-06 26.7 0.0 9.1e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|156937005|ref|YP_001434801.1| - 2.8e-35 121.5 0.0 3.5e-35 121.1 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|156937005|ref|YP_001434801.1| - 9.6e-13 47.8 0.0 1.5e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|156937006|ref|YP_001434802.1| - 1.3e-06 27.9 2.1 2.9e-06 26.8 1.4 1.6 1 0 0 1 1 1 1 KH domain S1 PF00575.18 gi|156937006|ref|YP_001434802.1| - 7.1e-05 22.8 0.4 0.0035 17.3 0.0 3.1 3 0 0 3 3 3 1 S1 RNA binding domain KH_3 PF13014.1 gi|156937006|ref|YP_001434802.1| - 0.014 15.0 0.3 0.038 13.6 0.2 1.8 1 0 0 1 1 1 0 KH domain KH_2 PF07650.12 gi|156937006|ref|YP_001434802.1| - 0.028 13.9 2.4 0.058 12.9 1.7 1.6 1 0 0 1 1 1 0 KH domain DUF2352 PF09817.4 gi|156937006|ref|YP_001434802.1| - 0.056 11.6 0.0 0.07 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2352) Mu-like_Com PF10122.4 gi|156937007|ref|YP_001434803.1| - 0.0057 15.6 3.9 0.015 14.3 0.3 2.2 2 0 0 2 2 2 1 Mu-like prophage protein Com zinc_ribbon_2 PF13240.1 gi|156937007|ref|YP_001434803.1| - 0.0092 15.4 0.7 0.031 13.7 0.5 1.9 1 1 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|156937007|ref|YP_001434803.1| - 0.016 14.6 2.0 0.057 12.8 1.4 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-Mss51 PF13824.1 gi|156937007|ref|YP_001434803.1| - 0.048 13.5 1.8 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|156937007|ref|YP_001434803.1| - 0.093 11.9 4.1 0.38 10.0 0.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|156937007|ref|YP_001434803.1| - 0.15 12.0 0.1 7.1 6.6 0.0 2.3 2 0 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.5 gi|156937007|ref|YP_001434803.1| - 0.16 11.9 0.9 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|156937007|ref|YP_001434803.1| - 0.24 11.2 2.4 7.6 6.4 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-tcix PF14952.1 gi|156937007|ref|YP_001434803.1| - 1.8 7.9 6.5 0.13 11.5 1.0 1.6 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RNA_pol_Rpc34 PF05158.7 gi|156937008|ref|YP_001434804.1| - 5.1e-06 25.8 3.1 0.0012 18.0 0.1 2.1 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit B-block_TFIIIC PF04182.7 gi|156937008|ref|YP_001434804.1| - 6.8e-06 25.8 0.3 1.1e-05 25.1 0.2 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|156937008|ref|YP_001434804.1| - 0.039 14.2 0.3 0.12 12.6 0.1 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|156937008|ref|YP_001434804.1| - 0.048 13.3 0.2 0.13 11.9 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4127 PF13552.1 gi|156937008|ref|YP_001434804.1| - 0.09 11.1 0.2 1 7.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4127) DUF3464 PF11947.3 gi|156937008|ref|YP_001434804.1| - 0.13 11.7 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) MarR PF01047.17 gi|156937008|ref|YP_001434804.1| - 0.15 11.7 0.8 0.29 10.8 0.1 1.9 2 1 0 2 2 2 0 MarR family Shikimate_dh_N PF08501.6 gi|156937010|ref|YP_001434806.1| - 9.3e-24 83.3 0.0 2.4e-23 81.9 0.0 1.7 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|156937010|ref|YP_001434806.1| - 2.1e-14 53.7 0.1 5.9e-14 52.3 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|156937010|ref|YP_001434806.1| - 4.6e-05 23.7 0.3 0.00011 22.4 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|156937010|ref|YP_001434806.1| - 0.0028 18.1 0.1 0.0047 17.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|156937010|ref|YP_001434806.1| - 0.003 16.5 0.2 0.0052 15.8 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase PDH PF02153.12 gi|156937010|ref|YP_001434806.1| - 0.0055 15.6 0.1 0.0088 14.9 0.1 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_7 PF13241.1 gi|156937010|ref|YP_001434806.1| - 0.0097 16.1 0.3 0.018 15.2 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|156937010|ref|YP_001434806.1| - 0.012 14.9 0.2 0.023 14.0 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|156937010|ref|YP_001434806.1| - 0.065 12.3 0.1 0.11 11.5 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B5 PF03484.10 gi|156937010|ref|YP_001434806.1| - 0.065 13.0 0.1 0.32 10.8 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetase B5 domain 3HCDH_N PF02737.13 gi|156937010|ref|YP_001434806.1| - 0.14 11.7 0.6 0.25 10.9 0.4 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AIRS PF00586.19 gi|156937014|ref|YP_001434810.1| - 3.5e-10 39.9 0.0 7.5e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain tRNA-synt_1 PF00133.17 gi|156937015|ref|YP_001434811.1| - 4.1e-120 401.5 0.4 2.6e-119 398.9 0.3 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|156937015|ref|YP_001434811.1| - 1.3e-34 119.1 3.6 2.7e-34 118.1 2.5 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|156937015|ref|YP_001434811.1| - 1.7e-27 96.0 1.3 2.3e-13 49.6 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|156937015|ref|YP_001434811.1| - 2.1e-06 27.1 0.0 0.012 14.9 0.0 2.6 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|156937015|ref|YP_001434811.1| - 0.00012 21.3 0.1 0.22 10.6 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|156937015|ref|YP_001434811.1| - 0.013 14.3 0.0 3.5 6.3 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (R) NSP10 PF09401.5 gi|156937015|ref|YP_001434811.1| - 0.044 13.5 0.4 0.1 12.3 0.3 1.6 1 0 0 1 1 1 0 RNA synthesis protein NSP10 zf-TFIIB PF13453.1 gi|156937015|ref|YP_001434811.1| - 0.068 12.3 1.6 20 4.4 0.1 3.4 3 0 0 3 3 3 0 Transcription factor zinc-finger DUF2399 PF09664.5 gi|156937015|ref|YP_001434811.1| - 0.15 11.9 0.0 0.56 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function C-terminus (DUF2399) HypA PF01155.14 gi|156937015|ref|YP_001434811.1| - 0.21 11.2 1.1 4 7.1 0.0 2.6 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|156937015|ref|YP_001434811.1| - 0.51 9.9 6.5 3 7.4 2.3 3.0 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|156937015|ref|YP_001434811.1| - 1.1 9.0 3.9 20 5.1 1.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon AAA_10 PF12846.2 gi|156937016|ref|YP_001434812.1| - 3.3e-20 72.7 0.0 1.2e-18 67.6 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|156937016|ref|YP_001434812.1| - 5.2e-19 68.9 0.0 8.8e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|156937016|ref|YP_001434812.1| - 6.8e-07 28.9 0.0 4.4e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|156937016|ref|YP_001434812.1| - 1.3e-05 25.3 0.0 0.00016 21.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|156937016|ref|YP_001434812.1| - 4.6e-05 22.2 0.0 0.0054 15.4 0.0 2.5 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|156937016|ref|YP_001434812.1| - 0.00038 18.9 0.0 0.052 11.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TraG-D_C PF12696.2 gi|156937016|ref|YP_001434812.1| - 0.00085 19.1 0.0 0.0022 17.8 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_17 PF13207.1 gi|156937016|ref|YP_001434812.1| - 0.0014 19.4 0.5 0.0066 17.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain Zot PF05707.7 gi|156937016|ref|YP_001434812.1| - 0.0015 18.0 0.0 0.018 14.5 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) Zeta_toxin PF06414.7 gi|156937016|ref|YP_001434812.1| - 0.0019 17.3 0.0 0.0051 15.9 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|156937016|ref|YP_001434812.1| - 0.0031 17.3 0.1 0.089 12.7 0.0 2.5 2 1 1 3 3 2 1 AAA domain MobB PF03205.9 gi|156937016|ref|YP_001434812.1| - 0.0037 16.9 0.4 0.018 14.7 0.1 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|156937016|ref|YP_001434812.1| - 0.0063 16.7 0.0 0.5 10.5 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|156937016|ref|YP_001434812.1| - 0.0065 16.1 0.1 0.018 14.7 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_18 PF13238.1 gi|156937016|ref|YP_001434812.1| - 0.0074 16.5 0.0 0.017 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|156937016|ref|YP_001434812.1| - 0.008 16.1 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|156937016|ref|YP_001434812.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|156937016|ref|YP_001434812.1| - 0.011 16.0 0.0 0.028 14.7 0.0 1.6 2 0 0 2 2 1 0 ABC transporter T2SE PF00437.15 gi|156937016|ref|YP_001434812.1| - 0.013 14.4 0.0 0.019 13.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.10 gi|156937016|ref|YP_001434812.1| - 0.018 14.8 0.0 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Miro PF08477.8 gi|156937016|ref|YP_001434812.1| - 0.024 15.1 0.0 0.073 13.5 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein NB-ARC PF00931.17 gi|156937016|ref|YP_001434812.1| - 0.033 13.0 0.0 0.06 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|156937016|ref|YP_001434812.1| - 0.043 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|156937016|ref|YP_001434812.1| - 0.047 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain PhoH PF02562.11 gi|156937016|ref|YP_001434812.1| - 0.052 12.7 0.0 0.84 8.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein MMR_HSR1 PF01926.18 gi|156937016|ref|YP_001434812.1| - 0.087 12.7 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|156937016|ref|YP_001434812.1| - 0.099 12.4 0.0 0.32 10.7 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain Viral_helicase1 PF01443.13 gi|156937016|ref|YP_001434812.1| - 0.12 11.8 0.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_18 PF13238.1 gi|156937017|ref|YP_001434813.1| - 5.4e-22 78.4 0.0 6.8e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|156937017|ref|YP_001434813.1| - 2.2e-12 47.8 0.1 3.4e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|156937017|ref|YP_001434813.1| - 8e-05 22.5 0.1 0.0014 18.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|156937017|ref|YP_001434813.1| - 0.00018 21.4 0.1 0.012 15.4 0.0 2.2 2 0 0 2 2 2 1 Shikimate kinase KTI12 PF08433.5 gi|156937017|ref|YP_001434813.1| - 0.00019 20.7 0.0 0.00029 20.1 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|156937017|ref|YP_001434813.1| - 0.00034 20.1 0.1 0.00061 19.3 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase TIP49 PF06068.8 gi|156937017|ref|YP_001434813.1| - 0.0007 18.4 0.1 0.00082 18.1 0.1 1.1 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|156937017|ref|YP_001434813.1| - 0.00089 19.4 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|156937017|ref|YP_001434813.1| - 0.0015 18.2 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|156937017|ref|YP_001434813.1| - 0.0022 17.1 0.1 0.0034 16.5 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin ADK PF00406.17 gi|156937017|ref|YP_001434813.1| - 0.0031 17.4 0.0 0.022 14.6 0.0 2.0 2 0 0 2 2 2 1 Adenylate kinase AAA_16 PF13191.1 gi|156937017|ref|YP_001434813.1| - 0.0063 16.5 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|156937017|ref|YP_001434813.1| - 0.0085 15.1 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Thymidylate_kin PF02223.12 gi|156937017|ref|YP_001434813.1| - 0.0093 15.3 0.0 0.2 11.0 0.0 2.1 2 0 0 2 2 2 1 Thymidylate kinase AAA_22 PF13401.1 gi|156937017|ref|YP_001434813.1| - 0.011 15.9 0.1 0.015 15.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|156937017|ref|YP_001434813.1| - 0.011 15.4 0.1 0.033 13.9 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain PRK PF00485.13 gi|156937017|ref|YP_001434813.1| - 0.012 15.1 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_3 PF07726.6 gi|156937017|ref|YP_001434813.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|156937017|ref|YP_001434813.1| - 0.017 14.8 0.5 0.046 13.4 0.3 1.7 1 1 1 2 2 2 0 NTPase AAA_28 PF13521.1 gi|156937017|ref|YP_001434813.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|156937017|ref|YP_001434813.1| - 0.018 13.7 0.1 0.023 13.4 0.1 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein APS_kinase PF01583.15 gi|156937017|ref|YP_001434813.1| - 0.018 14.6 0.0 0.042 13.5 0.0 1.7 2 0 0 2 2 1 0 Adenylylsulphate kinase RNA_helicase PF00910.17 gi|156937017|ref|YP_001434813.1| - 0.027 14.6 0.0 0.057 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|156937017|ref|YP_001434813.1| - 0.028 13.8 0.2 0.076 12.4 0.1 1.8 1 1 1 2 2 2 0 AAA domain NACHT PF05729.7 gi|156937017|ref|YP_001434813.1| - 0.046 13.3 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATP_bind_2 PF03668.10 gi|156937017|ref|YP_001434813.1| - 0.048 12.7 0.0 0.13 11.2 0.0 1.7 1 1 0 1 1 1 0 P-loop ATPase protein family cobW PF02492.14 gi|156937017|ref|YP_001434813.1| - 0.048 13.0 0.1 0.067 12.6 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|156937017|ref|YP_001434813.1| - 0.052 12.7 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|156937017|ref|YP_001434813.1| - 0.054 13.5 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|156937017|ref|YP_001434813.1| - 0.067 12.7 0.6 0.12 11.8 0.4 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|156937017|ref|YP_001434813.1| - 0.075 12.7 0.7 0.13 11.9 0.4 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|156937017|ref|YP_001434813.1| - 0.083 12.3 0.2 0.12 11.7 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KaiC PF06745.8 gi|156937017|ref|YP_001434813.1| - 0.088 11.9 0.3 0.27 10.3 0.1 1.7 1 1 1 2 2 2 0 KaiC Cytidylate_kin2 PF13189.1 gi|156937017|ref|YP_001434813.1| - 0.092 12.6 0.1 0.21 11.4 0.0 1.6 1 1 1 2 2 2 0 Cytidylate kinase-like family dNK PF01712.14 gi|156937017|ref|YP_001434813.1| - 0.099 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_14 PF13173.1 gi|156937017|ref|YP_001434813.1| - 0.1 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|156937017|ref|YP_001434813.1| - 0.11 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit T2SE PF00437.15 gi|156937017|ref|YP_001434813.1| - 0.12 11.2 0.2 0.16 10.8 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_N PF05496.7 gi|156937017|ref|YP_001434813.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_10 PF12846.2 gi|156937017|ref|YP_001434813.1| - 0.17 11.2 0.0 0.17 11.2 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|156937017|ref|YP_001434813.1| - 0.19 11.2 0.5 0.32 10.4 0.3 1.5 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AP_endonuc_2 PF01261.19 gi|156937018|ref|YP_001434814.1| - 8.4e-24 84.0 0.7 1.2e-23 83.5 0.2 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|156937018|ref|YP_001434814.1| - 0.0025 18.0 0.4 0.038 14.1 0.0 2.8 2 2 0 2 2 2 1 Radical SAM superfamily ComA PF02679.10 gi|156937018|ref|YP_001434814.1| - 0.0026 16.8 0.0 0.0052 15.8 0.0 1.7 1 1 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) DHquinase_I PF01487.10 gi|156937018|ref|YP_001434814.1| - 0.0094 15.6 0.1 0.1 12.2 0.0 2.2 2 1 0 2 2 2 1 Type I 3-dehydroquinase Glyco_hydro_97 PF10566.4 gi|156937018|ref|YP_001434814.1| - 0.048 12.7 0.1 0.3 10.1 0.1 1.9 1 1 1 2 2 2 0 Glycoside hydrolase 97 HMGL-like PF00682.14 gi|156937018|ref|YP_001434814.1| - 0.066 12.8 0.0 0.48 10.0 0.0 2.2 1 1 1 2 2 2 0 HMGL-like Pterin_bind PF00809.17 gi|156937018|ref|YP_001434814.1| - 0.14 11.4 0.6 0.43 9.9 0.1 2.0 3 0 0 3 3 3 0 Pterin binding enzyme dUTPase PF00692.14 gi|156937019|ref|YP_001434815.1| - 6.2e-15 54.7 0.0 8.5e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|156937019|ref|YP_001434815.1| - 4.9e-07 28.4 0.0 1.2e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AsnC_trans_reg PF01037.16 gi|156937021|ref|YP_001434817.1| - 1.5e-12 46.9 0.1 1.7e-12 46.8 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|156937021|ref|YP_001434817.1| - 0.014 15.0 0.0 0.021 14.5 0.0 1.4 1 1 0 1 1 1 0 GYD domain DHO_dh PF01180.16 gi|156937022|ref|YP_001434818.1| - 9.1e-54 182.4 0.1 1e-53 182.2 0.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|156937022|ref|YP_001434818.1| - 8.2e-09 34.7 0.5 5.3e-08 32.0 0.3 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF561 PF04481.7 gi|156937022|ref|YP_001434818.1| - 0.00019 20.4 3.7 0.43 9.4 0.3 3.2 2 1 2 4 4 4 2 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|156937022|ref|YP_001434818.1| - 0.0014 17.9 0.9 0.09 12.0 0.0 2.5 1 1 0 2 2 2 1 Histidine biosynthesis protein TPP_enzyme_M PF00205.17 gi|156937022|ref|YP_001434818.1| - 0.0049 16.6 0.7 0.6 9.8 0.0 3.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain IMPDH PF00478.20 gi|156937022|ref|YP_001434818.1| - 0.0099 14.8 0.4 0.0099 14.8 0.3 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|156937022|ref|YP_001434818.1| - 0.078 12.1 9.9 0.036 13.2 0.8 2.3 3 0 0 3 3 3 0 Nitronate monooxygenase PucR PF07905.6 gi|156937022|ref|YP_001434818.1| - 0.18 11.4 1.2 10 5.7 0.0 3.1 2 1 2 4 4 4 0 Purine catabolism regulatory protein-like family DUF4330 PF14221.1 gi|156937023|ref|YP_001434819.1| - 0.018 14.9 0.3 0.035 13.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Fer4_14 PF13394.1 gi|156937024|ref|YP_001434820.1| - 4e-18 65.5 0.0 6.3e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|156937024|ref|YP_001434820.1| - 6.3e-11 42.7 0.0 8.3e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|156937024|ref|YP_001434820.1| - 6.1e-10 39.3 0.0 9.7e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_L7Ae PF01248.21 gi|156937025|ref|YP_001434821.1| - 8.2e-32 108.5 1.2 8.4e-32 108.5 0.3 1.4 1 1 1 2 2 2 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|156937025|ref|YP_001434821.1| - 0.00078 19.3 0.0 0.00092 19.0 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|156937025|ref|YP_001434821.1| - 0.01 15.6 0.1 0.018 14.8 0.0 1.5 1 1 0 1 1 1 0 PELOTA RNA binding domain DbpA PF03880.10 gi|156937025|ref|YP_001434821.1| - 0.073 12.7 0.1 1.1 8.9 0.0 2.8 3 1 1 4 4 4 0 DbpA RNA binding domain DUF711 PF05167.7 gi|156937026|ref|YP_001434822.1| - 1.8e-130 435.2 0.1 2e-130 435.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) CRA PF06589.6 gi|156937026|ref|YP_001434822.1| - 0.045 13.0 0.2 0.079 12.2 0.1 1.3 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) AP_endonuc_2 PF01261.19 gi|156937026|ref|YP_001434822.1| - 0.13 11.5 0.1 0.27 10.4 0.0 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel CGI-121 PF08617.5 gi|156937027|ref|YP_001434823.1| - 0.066 12.8 0.0 0.081 12.5 0.0 1.1 1 0 0 1 1 1 0 Kinase binding protein CGI-121 Pribosyltran PF00156.22 gi|156937028|ref|YP_001434824.1| - 4.7e-20 71.5 0.1 6.6e-20 71.0 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain CBM_3 PF00942.13 gi|156937029|ref|YP_001434825.1| - 0.054 13.5 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Cellulose binding domain MS_channel PF00924.13 gi|156937030|ref|YP_001434826.1| - 1.1e-05 24.8 1.1 1.6e-05 24.3 0.7 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel TrkA_N PF02254.13 gi|156937031|ref|YP_001434827.1| - 3.7e-22 78.4 1.0 5.5e-22 77.9 0.7 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|156937031|ref|YP_001434827.1| - 5.3e-09 35.5 1.7 3.1e-08 33.0 0.1 2.7 2 1 1 3 3 3 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|156937031|ref|YP_001434827.1| - 3.4e-07 30.4 0.7 4.3e-07 30.1 0.5 1.1 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|156937031|ref|YP_001434827.1| - 1.2e-06 28.4 0.3 1.8e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|156937031|ref|YP_001434827.1| - 1.4e-06 28.4 0.2 0.00015 21.9 0.0 2.3 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|156937031|ref|YP_001434827.1| - 3.7e-06 27.1 0.5 6e-06 26.4 0.3 1.4 1 1 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|156937031|ref|YP_001434827.1| - 8.5e-06 25.2 0.2 1.2e-05 24.7 0.1 1.4 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|156937031|ref|YP_001434827.1| - 5.1e-05 22.7 0.1 0.00049 19.5 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA CPSase_L_chain PF00289.17 gi|156937031|ref|YP_001434827.1| - 9.1e-05 22.5 0.3 0.0013 18.7 0.0 2.6 2 1 1 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 3HCDH_N PF02737.13 gi|156937031|ref|YP_001434827.1| - 0.00014 21.5 0.1 0.0002 21.0 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UPF0146 PF03686.8 gi|156937031|ref|YP_001434827.1| - 0.00033 20.4 0.5 0.0008 19.2 0.3 1.8 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0146) ThiF PF00899.16 gi|156937031|ref|YP_001434827.1| - 0.0004 20.2 2.1 0.42 10.4 0.1 2.2 1 1 1 2 2 2 2 ThiF family ADH_zinc_N PF00107.21 gi|156937031|ref|YP_001434827.1| - 0.00063 19.2 1.3 0.16 11.5 0.1 2.2 1 1 1 2 2 2 2 Zinc-binding dehydrogenase Saccharop_dh PF03435.13 gi|156937031|ref|YP_001434827.1| - 0.0011 18.0 0.6 0.0015 17.5 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|156937031|ref|YP_001434827.1| - 0.0013 19.1 0.1 0.005 17.2 0.1 2.0 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|156937031|ref|YP_001434827.1| - 0.003 16.7 0.1 0.0076 15.4 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|156937031|ref|YP_001434827.1| - 0.014 15.6 0.0 0.021 15.1 0.0 1.2 1 0 0 1 1 1 0 XdhC Rossmann domain adh_short PF00106.20 gi|156937031|ref|YP_001434827.1| - 0.016 15.1 1.3 0.14 12.1 0.9 2.0 1 1 0 1 1 1 0 short chain dehydrogenase Methyltransf_26 PF13659.1 gi|156937031|ref|YP_001434827.1| - 0.048 13.6 0.1 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain NifZ PF04319.8 gi|156937031|ref|YP_001434827.1| - 0.05 12.9 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 NifZ domain UPF0180 PF03698.8 gi|156937031|ref|YP_001434827.1| - 0.084 12.7 0.2 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Methyltransf_12 PF08242.7 gi|156937031|ref|YP_001434827.1| - 0.09 13.2 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Epimerase PF01370.16 gi|156937031|ref|YP_001434827.1| - 0.1 11.9 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family YwiC PF14256.1 gi|156937032|ref|YP_001434828.1| - 0.0031 17.5 3.9 0.0036 17.3 2.7 1.1 1 0 0 1 1 1 1 YwiC-like protein DAGK_prokar PF01219.14 gi|156937032|ref|YP_001434828.1| - 0.011 15.3 0.2 0.017 14.7 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase Metallophos_2 PF12850.2 gi|156937033|ref|YP_001434829.1| - 1.2e-07 31.7 0.0 1.5e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PGA_cap PF09587.5 gi|156937033|ref|YP_001434829.1| - 0.016 14.6 0.0 0.02 14.2 0.0 1.3 1 1 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap Metallophos PF00149.23 gi|156937033|ref|YP_001434829.1| - 0.023 14.1 0.1 0.26 10.6 0.1 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase Phe_hydrox_dim PF07976.7 gi|156937033|ref|YP_001434829.1| - 0.028 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Phenol hydroxylase, C-terminal dimerisation domain Ins134_P3_kin PF05770.6 gi|156937033|ref|YP_001434829.1| - 0.056 12.4 0.0 0.096 11.6 0.0 1.3 1 0 0 1 1 1 0 Inositol 1, 3, 4-trisphosphate 5/6-kinase DZR PF12773.2 gi|156937034|ref|YP_001434830.1| - 0.035 13.9 0.3 0.072 12.9 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Cript PF10235.4 gi|156937034|ref|YP_001434830.1| - 0.082 13.2 0.2 0.23 11.8 0.1 1.7 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Rubredoxin PF00301.15 gi|156937034|ref|YP_001434830.1| - 0.32 10.9 2.3 3.5 7.5 0.0 2.8 3 0 0 3 3 3 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|156937034|ref|YP_001434830.1| - 0.8 8.9 6.2 4.3 6.6 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|156937034|ref|YP_001434830.1| - 0.83 9.0 5.1 7.5 5.9 3.5 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding RNA_binding PF01877.12 gi|156937035|ref|YP_001434831.1| - 1.8e-31 108.6 1.1 2.1e-31 108.4 0.8 1.1 1 0 0 1 1 1 1 RNA binding DUF2122 PF09895.4 gi|156937036|ref|YP_001434832.1| - 4.6e-35 120.0 0.2 6.5e-35 119.5 0.1 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) SpoU_methylase PF00588.14 gi|156937036|ref|YP_001434832.1| - 0.0098 15.7 0.0 0.011 15.6 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family DUF2888 PF11135.3 gi|156937036|ref|YP_001434832.1| - 0.05 13.3 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) TMP-TENI PF02581.12 gi|156937036|ref|YP_001434832.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI HAD PF12710.2 gi|156937037|ref|YP_001434833.1| - 2.2e-12 47.5 0.0 2.7e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|156937037|ref|YP_001434833.1| - 4e-10 40.4 0.1 1.2e-09 38.9 0.0 1.7 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|156937037|ref|YP_001434833.1| - 7.1e-10 38.8 0.1 3.6e-05 23.4 0.1 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|156937037|ref|YP_001434833.1| - 0.00011 22.5 0.0 0.00021 21.5 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|156937037|ref|YP_001434833.1| - 0.00018 20.8 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Put_Phosphatase PF06888.7 gi|156937037|ref|YP_001434833.1| - 0.00019 20.7 0.0 0.011 14.8 0.0 2.0 2 0 0 2 2 2 2 Putative Phosphatase RNA_pol_Rpb1_1 PF04997.7 gi|156937038|ref|YP_001434834.1| - 1.3e-88 297.5 0.0 1.1e-87 294.4 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|156937038|ref|YP_001434834.1| - 8.8e-72 240.4 0.0 1.5e-71 239.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|156937038|ref|YP_001434834.1| - 4.9e-37 127.1 0.0 9.8e-37 126.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|156937038|ref|YP_001434834.1| - 2e-32 111.1 0.0 4.4e-32 110.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|156937038|ref|YP_001434834.1| - 5.3e-27 94.7 0.0 8.2e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Zn-ribbon_8 PF09723.5 gi|156937038|ref|YP_001434834.1| - 0.026 14.4 1.7 3.2 7.7 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|156937038|ref|YP_001434834.1| - 0.096 11.9 5.2 1.5 8.1 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Osmo_CC PF08946.5 gi|156937038|ref|YP_001434834.1| - 0.53 10.3 3.6 1.5 8.9 2.5 1.8 1 0 0 1 1 1 0 Osmosensory transporter coiled coil UPF0547 PF10571.4 gi|156937038|ref|YP_001434834.1| - 0.53 10.0 2.7 4.6 7.0 0.1 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|156937038|ref|YP_001434834.1| - 0.86 9.4 3.7 32 4.4 2.5 2.4 1 1 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb1_5 PF04998.12 gi|156937039|ref|YP_001434835.1| - 4.9e-55 186.7 0.1 6.2e-55 186.4 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 UBA_3 PF09288.5 gi|156937039|ref|YP_001434835.1| - 0.021 14.4 0.4 0.89 9.2 0.0 3.3 3 0 0 3 3 3 0 Fungal ubiquitin-associated domain Ribosomal_L7Ae PF01248.21 gi|156937040|ref|YP_001434836.1| - 2.1e-20 72.0 0.2 2.3e-20 71.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF3354 PF11834.3 gi|156937040|ref|YP_001434836.1| - 0.082 12.5 0.1 3.3 7.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3354) KH_2 PF07650.12 gi|156937041|ref|YP_001434837.1| - 2.6e-15 55.7 1.9 9.5e-10 37.9 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|156937041|ref|YP_001434837.1| - 1.2e-14 53.8 0.7 1.2e-14 53.8 0.5 1.9 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|156937041|ref|YP_001434837.1| - 2.8e-10 39.6 0.1 0.00029 20.4 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|156937041|ref|YP_001434837.1| - 1e-06 28.2 1.6 0.00046 19.7 0.4 2.4 2 0 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.20 gi|156937042|ref|YP_001434838.1| - 1.9e-40 137.0 0.9 2.2e-40 136.8 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.9 gi|156937043|ref|YP_001434839.1| - 1.1e-10 40.8 0.0 1.2e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Ribosomal_S7 PF00177.16 gi|156937044|ref|YP_001434840.1| - 2.5e-45 153.7 0.3 2.8e-45 153.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Cdc6_C PF09079.6 gi|156937045|ref|YP_001434841.1| - 4e-24 84.1 1.7 1.5e-23 82.3 0.5 2.4 3 0 0 3 3 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|156937045|ref|YP_001434841.1| - 3.8e-12 46.5 0.0 1.3e-11 44.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|156937045|ref|YP_001434841.1| - 4.6e-11 42.9 0.2 1.5e-10 41.3 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|156937045|ref|YP_001434841.1| - 7.4e-08 32.6 0.2 2.9e-07 30.7 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|156937045|ref|YP_001434841.1| - 1.3e-07 31.5 0.8 2.5e-07 30.6 0.5 1.4 1 0 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|156937045|ref|YP_001434841.1| - 1.2e-05 24.4 0.0 2.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|156937045|ref|YP_001434841.1| - 6e-05 22.0 0.2 0.00012 21.0 0.1 1.5 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.24 gi|156937045|ref|YP_001434841.1| - 0.00061 19.3 0.1 0.18 11.2 0.0 2.4 1 1 1 2 2 2 2 DEAD/DEAH box helicase NACHT PF05729.7 gi|156937045|ref|YP_001434841.1| - 0.0022 17.6 0.0 0.0052 16.4 0.0 1.6 2 0 0 2 2 2 1 NACHT domain PIF1 PF05970.9 gi|156937045|ref|YP_001434841.1| - 0.0032 16.4 0.1 0.0058 15.6 0.1 1.3 1 0 0 1 1 1 1 PIF1-like helicase Bac_DnaA PF00308.13 gi|156937045|ref|YP_001434841.1| - 0.0043 16.7 0.0 0.0089 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial dnaA protein T2SE PF00437.15 gi|156937045|ref|YP_001434841.1| - 0.0056 15.6 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein KAP_NTPase PF07693.9 gi|156937045|ref|YP_001434841.1| - 0.0069 15.4 0.4 0.26 10.2 0.0 2.2 1 1 0 2 2 2 1 KAP family P-loop domain IstB_IS21 PF01695.12 gi|156937045|ref|YP_001434841.1| - 0.01 15.2 0.2 4.8 6.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein ResIII PF04851.10 gi|156937045|ref|YP_001434841.1| - 0.011 15.6 0.1 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|156937045|ref|YP_001434841.1| - 0.013 15.2 0.3 0.089 12.5 0.1 2.5 2 1 0 2 2 2 0 Part of AAA domain AAA_32 PF13654.1 gi|156937045|ref|YP_001434841.1| - 0.015 13.9 0.8 0.64 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Kinesin PF00225.18 gi|156937045|ref|YP_001434841.1| - 0.017 13.8 0.0 0.027 13.1 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain DUF603 PF04645.7 gi|156937045|ref|YP_001434841.1| - 0.025 14.5 0.2 0.056 13.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF603 AAA_17 PF13207.1 gi|156937045|ref|YP_001434841.1| - 0.1 13.4 0.4 0.1 13.4 0.3 2.2 2 1 0 2 2 1 0 AAA domain Torsin PF06309.6 gi|156937045|ref|YP_001434841.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_14 PF13173.1 gi|156937045|ref|YP_001434841.1| - 0.14 12.0 1.6 0.27 11.1 0.2 2.1 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|156937045|ref|YP_001434841.1| - 0.37 10.4 4.7 1.7 8.2 0.8 3.1 2 2 1 3 3 3 0 NTPase Thymidylate_kin PF02223.12 gi|156937045|ref|YP_001434841.1| - 1.1 8.6 3.6 0.87 8.9 0.3 2.3 2 0 0 2 2 2 0 Thymidylate kinase DUF99 PF01949.11 gi|156937046|ref|YP_001434842.1| - 4e-05 22.8 0.0 5.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF2063 PF09836.4 gi|156937046|ref|YP_001434842.1| - 0.018 15.0 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) Pribosyltran_N PF13793.1 gi|156937047|ref|YP_001434843.1| - 2.9e-27 94.7 0.0 1e-22 80.0 0.0 2.7 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|156937047|ref|YP_001434843.1| - 2.1e-17 63.0 0.8 2.1e-17 63.0 0.5 2.3 4 0 0 4 4 4 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|156937047|ref|YP_001434843.1| - 1.1e-10 41.5 1.8 1.1e-10 41.5 0.3 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|156937047|ref|YP_001434843.1| - 0.00011 21.5 0.0 0.0012 18.1 0.0 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|156937047|ref|YP_001434843.1| - 0.00037 19.7 0.1 0.0006 19.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase eRF1_1 PF03463.10 gi|156937048|ref|YP_001434844.1| - 1.2e-24 86.4 0.1 2.2e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|156937048|ref|YP_001434844.1| - 3.9e-17 62.5 0.0 8.9e-17 61.3 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|156937048|ref|YP_001434844.1| - 7.9e-15 55.3 0.1 2.3e-14 53.8 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 HGTP_anticodon PF03129.15 gi|156937048|ref|YP_001434844.1| - 0.11 12.4 0.4 1.7 8.6 0.0 2.6 1 1 1 2 2 2 0 Anticodon binding domain Ub-Mut7C PF14451.1 gi|156937049|ref|YP_001434845.1| - 0.02 14.3 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin TGS PF02824.16 gi|156937049|ref|YP_001434845.1| - 0.094 12.5 0.1 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 TGS domain Usp PF00582.21 gi|156937050|ref|YP_001434846.1| - 3.1e-35 121.4 0.5 3.4e-35 121.2 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Glyco_tran_28_C PF04101.11 gi|156937050|ref|YP_001434846.1| - 0.013 15.1 0.5 0.45 10.1 0.1 2.0 2 0 0 2 2 2 0 Glycosyltransferase family 28 C-terminal domain ETF PF01012.16 gi|156937050|ref|YP_001434846.1| - 0.028 14.1 0.1 0.14 11.9 0.0 1.8 1 1 1 2 2 2 0 Electron transfer flavoprotein domain DXP_reductoisom PF02670.11 gi|156937050|ref|YP_001434846.1| - 0.05 14.1 0.1 0.057 13.9 0.1 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMP-binding PF00501.23 gi|156937051|ref|YP_001434847.1| - 5.7e-74 248.9 0.0 6.7e-74 248.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|156937052|ref|YP_001434848.1| - 2.2e-26 92.6 0.4 4.2e-26 91.6 0.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|156937052|ref|YP_001434848.1| - 2.4e-24 85.5 0.2 3.3e-24 85.0 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Metallophos_2 PF12850.2 gi|156937054|ref|YP_001434850.1| - 1.3e-06 28.3 0.0 1.6e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|156937054|ref|YP_001434850.1| - 0.0055 16.1 0.0 0.016 14.6 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Hydrolase PF00702.21 gi|156937054|ref|YP_001434850.1| - 0.045 14.1 0.1 0.06 13.7 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase IF3_N PF05198.11 gi|156937054|ref|YP_001434850.1| - 0.064 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain MoaE PF02391.12 gi|156937055|ref|YP_001434851.1| - 2.8e-20 72.2 0.0 3.6e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|156937055|ref|YP_001434851.1| - 0.00089 19.6 0.3 0.012 16.0 0.0 2.7 3 1 0 3 3 3 1 ThiS family HMGL-like PF00682.14 gi|156937056|ref|YP_001434852.1| - 1.2e-24 87.2 0.0 1.8e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like DIM PF08194.7 gi|156937057|ref|YP_001434853.1| - 0.03 14.2 8.5 0.2 11.6 0.8 2.2 1 1 1 2 2 2 0 DIM protein PPR_3 PF13812.1 gi|156937058|ref|YP_001434854.1| - 0.048 13.9 0.0 16 6.1 0.0 3.0 2 1 1 3 3 3 0 Pentatricopeptide repeat domain zf-LYAR PF08790.6 gi|156937059|ref|YP_001434855.1| - 0.049 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger DUF885 PF05960.6 gi|156937060|ref|YP_001434856.1| - 3.6e-60 204.6 3.8 6.8e-53 180.6 2.6 3.0 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF885) Peptidase_M22 PF00814.20 gi|156937061|ref|YP_001434857.1| - 1.6e-71 240.9 0.0 2e-71 240.6 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family ATC_hydrolase PF14196.1 gi|156937062|ref|YP_001434858.1| - 0.092 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase V4R PF02830.13 gi|156937062|ref|YP_001434858.1| - 0.11 12.4 0.1 5.8 6.8 0.0 2.4 2 0 0 2 2 2 0 V4R domain HAD PF12710.2 gi|156937063|ref|YP_001434859.1| - 0.016 15.3 0.2 0.14 12.3 0.0 2.2 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase KorB PF08535.5 gi|156937063|ref|YP_001434859.1| - 0.11 12.6 0.1 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 KorB domain DUF463 PF04317.7 gi|156937063|ref|YP_001434859.1| - 0.12 10.9 0.1 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 Homeobox PF00046.24 gi|156937063|ref|YP_001434859.1| - 0.15 11.7 0.0 0.4 10.3 0.0 1.7 1 0 0 1 1 1 0 Homeobox domain OMPdecase PF00215.19 gi|156937064|ref|YP_001434860.1| - 3.1e-28 98.7 3.2 3.7e-28 98.4 2.2 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Amidohydro_2 PF04909.9 gi|156937064|ref|YP_001434860.1| - 6.2e-05 22.6 0.2 9.2e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 Amidohydrolase PcrB PF01884.12 gi|156937064|ref|YP_001434860.1| - 0.00029 20.1 0.5 0.00067 18.9 0.1 1.7 1 1 0 1 1 1 1 PcrB family PEP_mutase PF13714.1 gi|156937064|ref|YP_001434860.1| - 0.00042 19.6 0.5 0.0011 18.2 0.2 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase HHH_5 PF14520.1 gi|156937064|ref|YP_001434860.1| - 0.019 15.1 3.7 2.3 8.4 0.1 2.9 2 1 0 2 2 2 0 Helix-hairpin-helix domain NYN PF01936.13 gi|156937064|ref|YP_001434860.1| - 0.019 15.2 0.1 3 8.1 0.0 2.3 2 0 0 2 2 2 0 NYN domain AP_endonuc_2 PF01261.19 gi|156937064|ref|YP_001434860.1| - 0.023 14.0 0.3 0.078 12.2 0.1 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Amidohydro_4 PF13147.1 gi|156937064|ref|YP_001434860.1| - 0.042 13.8 2.8 0.045 13.7 1.9 1.1 1 0 0 1 1 1 0 Amidohydrolase BtpA PF03437.10 gi|156937064|ref|YP_001434860.1| - 0.19 10.9 2.8 0.84 8.8 1.9 2.1 1 1 0 1 1 1 0 BtpA family Ribosomal_S27 PF01599.14 gi|156937065|ref|YP_001434861.1| - 5.6e-09 35.6 0.4 7.4e-09 35.2 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|156937065|ref|YP_001434861.1| - 0.0003 20.5 3.2 0.00032 20.4 2.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DZR PF12773.2 gi|156937065|ref|YP_001434861.1| - 0.0026 17.5 0.3 0.0036 17.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|156937065|ref|YP_001434861.1| - 0.0026 17.3 0.8 0.0035 16.9 0.6 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|156937065|ref|YP_001434861.1| - 0.0061 16.4 0.2 0.0068 16.2 0.2 1.1 1 0 0 1 1 1 1 IBR domain C1_1 PF00130.17 gi|156937065|ref|YP_001434861.1| - 0.0089 15.7 1.1 0.011 15.5 0.8 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Auto_anti-p27 PF06677.7 gi|156937065|ref|YP_001434861.1| - 0.016 14.9 1.7 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|156937065|ref|YP_001434861.1| - 0.019 14.1 3.2 0.48 9.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|156937065|ref|YP_001434861.1| - 0.02 14.6 1.5 2.7 7.8 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein zinc_ribbon_2 PF13240.1 gi|156937065|ref|YP_001434861.1| - 0.028 13.9 3.7 0.7 9.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|156937065|ref|YP_001434861.1| - 0.03 14.2 1.9 2.6 8.0 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.5 gi|156937065|ref|YP_001434861.1| - 0.037 13.9 0.9 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|156937065|ref|YP_001434861.1| - 0.061 13.2 2.5 5.7 6.8 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin RNA_POL_M_15KD PF02150.11 gi|156937065|ref|YP_001434861.1| - 0.085 12.5 0.3 0.28 10.8 0.2 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit FeS PF04060.8 gi|156937065|ref|YP_001434861.1| - 0.087 12.4 1.2 0.22 11.1 0.1 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster zf-NADH-PPase PF09297.6 gi|156937065|ref|YP_001434861.1| - 0.099 12.1 5.1 0.7 9.4 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|156937065|ref|YP_001434861.1| - 0.15 11.7 3.2 0.48 10.1 2.2 1.8 1 1 0 1 1 1 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|156937065|ref|YP_001434861.1| - 0.23 11.5 7.7 0.75 9.8 0.4 2.2 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|156937065|ref|YP_001434861.1| - 0.57 9.5 2.6 6.2 6.2 0.1 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding zf-RanBP PF00641.13 gi|156937065|ref|YP_001434861.1| - 0.62 9.2 3.3 2.8 7.1 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn_ribbon_recom PF13408.1 gi|156937065|ref|YP_001434861.1| - 0.76 10.0 5.4 2.9 8.2 3.8 1.9 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-tcix PF14952.1 gi|156937065|ref|YP_001434861.1| - 1.1 8.6 4.3 0.97 8.8 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.1 gi|156937065|ref|YP_001434861.1| - 1.1 8.8 4.1 11 5.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|156937065|ref|YP_001434861.1| - 4.5 7.0 7.7 0.58 9.9 0.3 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4379 PF14311.1 gi|156937065|ref|YP_001434861.1| - 5.5 6.8 8.3 15 5.4 0.3 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4379) DNA_RNApol_7kD PF03604.8 gi|156937065|ref|YP_001434861.1| - 6.7 6.2 7.0 42 3.7 0.8 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.1 gi|156937065|ref|YP_001434861.1| - 7.2 7.1 7.3 4.3 7.7 0.3 2.3 2 1 0 2 2 2 0 Zinc-finger double domain Ribosomal_L37e PF01907.14 gi|156937065|ref|YP_001434861.1| - 9.2 6.1 7.5 2.6 7.9 3.0 1.7 2 1 0 2 2 2 0 Ribosomal protein L37e Ribosomal_S24e PF01282.14 gi|156937066|ref|YP_001434862.1| - 3.3e-22 78.0 0.3 4.1e-22 77.7 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e pRN1_helical PF13010.1 gi|156937066|ref|YP_001434862.1| - 0.0073 15.9 0.1 0.0096 15.5 0.0 1.2 1 0 0 1 1 1 1 Primase helical domain DNA_pol_lambd_f PF10391.4 gi|156937066|ref|YP_001434862.1| - 0.018 14.6 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Ribosomal_S17e PF00833.13 gi|156937067|ref|YP_001434863.1| - 3e-23 81.8 1.3 3.3e-23 81.7 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S17 Lsr2 PF11774.3 gi|156937067|ref|YP_001434863.1| - 0.012 15.5 0.1 0.018 14.9 0.1 1.3 1 0 0 1 1 1 0 Lsr2 DUF4109 PF13397.1 gi|156937067|ref|YP_001434863.1| - 0.12 12.7 0.2 0.15 12.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4109) Amidohydro_1 PF01979.15 gi|156937068|ref|YP_001434864.1| - 9.5e-12 45.2 0.0 1.6e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|156937068|ref|YP_001434864.1| - 9.8e-08 32.3 3.7 3.9e-07 30.3 2.6 1.7 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|156937068|ref|YP_001434864.1| - 0.0032 17.2 0.0 0.006 16.3 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|156937068|ref|YP_001434864.1| - 0.077 12.1 4.1 2.9 7.0 0.2 3.0 1 1 1 2 2 2 0 Amidohydrolase family PGK PF00162.14 gi|156937069|ref|YP_001434865.1| - 1.6e-126 421.9 0.0 1.8e-126 421.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase FhuF_C PF11575.3 gi|156937070|ref|YP_001434866.1| - 0.0063 16.1 4.6 0.011 15.2 1.2 2.6 2 0 0 2 2 2 1 FhuF 2Fe-2S C-terminal domain EndIII_4Fe-2S PF10576.4 gi|156937070|ref|YP_001434866.1| - 0.33 11.2 0.7 0.33 11.2 0.5 3.0 3 0 0 3 3 3 0 Iron-sulfur binding domain of endonuclease III FAD_binding_2 PF00890.19 gi|156937071|ref|YP_001434867.1| - 2.7e-113 378.9 1.0 4.2e-113 378.3 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|156937071|ref|YP_001434867.1| - 3e-36 124.1 0.1 6e-36 123.1 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|156937071|ref|YP_001434867.1| - 1.7e-11 44.3 0.9 5.2e-08 33.0 0.7 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|156937071|ref|YP_001434867.1| - 9e-10 37.9 3.1 1.4e-06 27.4 1.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|156937071|ref|YP_001434867.1| - 1.2e-09 37.7 3.1 1.4e-05 24.4 1.6 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|156937071|ref|YP_001434867.1| - 9.7e-07 27.5 0.7 0.0014 17.2 0.4 3.0 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|156937071|ref|YP_001434867.1| - 2.9e-05 23.1 3.4 0.00069 18.5 1.9 2.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|156937071|ref|YP_001434867.1| - 0.00022 20.3 0.7 1.4 7.9 0.1 3.2 3 0 0 3 3 3 2 Thi4 family FAD_binding_3 PF01494.14 gi|156937071|ref|YP_001434867.1| - 0.0017 17.4 0.4 0.0036 16.3 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|156937071|ref|YP_001434867.1| - 0.0037 17.6 0.8 0.036 14.4 0.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|156937071|ref|YP_001434867.1| - 0.0079 15.7 0.1 0.027 14.0 0.0 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|156937071|ref|YP_001434867.1| - 0.0082 16.2 1.1 0.18 11.8 0.8 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|156937071|ref|YP_001434867.1| - 0.039 12.8 0.2 0.063 12.1 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Tachylectin PF14517.1 gi|156937071|ref|YP_001434867.1| - 0.053 12.8 0.2 0.15 11.3 0.2 1.8 1 0 0 1 1 1 0 Tachylectin NAD_binding_8 PF13450.1 gi|156937071|ref|YP_001434867.1| - 0.11 12.4 6.6 0.04 13.9 1.2 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|156937071|ref|YP_001434867.1| - 0.14 12.3 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Glyco_trans_1_4 PF13692.1 gi|156937072|ref|YP_001434868.1| - 0.0002 21.4 0.0 0.00062 19.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Metallophos_2 PF12850.2 gi|156937073|ref|YP_001434869.1| - 1.7e-12 47.4 0.0 2.9e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|156937073|ref|YP_001434869.1| - 3.4e-09 36.4 0.0 1e-08 34.7 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Hydrolase PF00702.21 gi|156937073|ref|YP_001434869.1| - 0.0099 16.3 0.1 0.025 14.9 0.0 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DHquinase_I PF01487.10 gi|156937075|ref|YP_001434871.1| - 8.4e-25 87.7 0.0 1.6e-24 86.8 0.0 1.4 1 1 0 1 1 1 1 Type I 3-dehydroquinase Glycogen_syn PF05693.8 gi|156937076|ref|YP_001434872.1| - 0.064 11.4 0.1 0.067 11.4 0.0 1.0 1 0 0 1 1 1 0 Glycogen synthase Stn1_C PF12659.2 gi|156937076|ref|YP_001434872.1| - 0.079 12.7 0.0 0.084 12.6 0.0 1.1 1 0 0 1 1 1 0 Telomere capping C-terminal wHTH ST7 PF04184.7 gi|156937076|ref|YP_001434872.1| - 0.13 10.4 0.1 2.6 6.1 0.0 1.9 1 1 1 2 2 2 0 ST7 protein SHOCT PF09851.4 gi|156937076|ref|YP_001434872.1| - 0.21 11.1 0.3 0.21 11.1 0.2 1.8 2 0 0 2 2 2 0 Short C-terminal domain MMR_HSR1 PF01926.18 gi|156937077|ref|YP_001434873.1| - 4.4e-13 49.2 0.0 1.1e-12 47.8 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|156937077|ref|YP_001434873.1| - 4.7e-10 39.4 0.0 1.2e-09 38.1 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|156937077|ref|YP_001434873.1| - 9.8e-05 21.8 0.7 0.02 14.3 0.0 2.5 1 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|156937077|ref|YP_001434873.1| - 0.0013 18.1 0.0 0.011 15.1 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain TroA PF01297.12 gi|156937077|ref|YP_001434873.1| - 0.0017 17.6 0.0 0.0059 15.8 0.0 1.9 2 1 0 2 2 2 1 Periplasmic solute binding protein family FeoB_N PF02421.13 gi|156937077|ref|YP_001434873.1| - 0.004 16.4 0.0 0.027 13.7 0.0 2.3 2 1 0 2 2 2 1 Ferrous iron transport protein B ATP_bind_1 PF03029.12 gi|156937077|ref|YP_001434873.1| - 0.0082 15.6 0.1 0.11 12.0 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|156937077|ref|YP_001434873.1| - 0.016 15.7 0.0 0.054 13.9 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein IIGP PF05049.8 gi|156937077|ref|YP_001434873.1| - 0.023 13.5 0.0 0.034 12.9 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_16 PF13191.1 gi|156937077|ref|YP_001434873.1| - 0.025 14.5 0.0 0.14 12.1 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|156937077|ref|YP_001434873.1| - 0.037 14.3 0.1 0.11 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|156937077|ref|YP_001434873.1| - 0.054 13.4 2.3 0.093 12.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|156937077|ref|YP_001434873.1| - 0.086 13.6 2.0 0.36 11.6 0.1 2.6 2 2 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|156937077|ref|YP_001434873.1| - 0.11 12.2 0.2 1.6 8.5 0.0 2.5 2 1 1 3 3 3 0 Dynamin family Ribosomal_S19e PF01090.14 gi|156937078|ref|YP_001434874.1| - 8.3e-54 180.8 0.0 9.9e-54 180.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Rrf2 PF02082.15 gi|156937078|ref|YP_001434874.1| - 0.0008 19.4 0.6 0.0018 18.3 0.2 1.7 1 1 0 2 2 2 1 Transcriptional regulator HTH_12 PF08461.5 gi|156937078|ref|YP_001434874.1| - 0.0022 17.6 0.6 0.0052 16.4 0.0 1.9 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|156937078|ref|YP_001434874.1| - 0.0038 16.9 0.1 0.01 15.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|156937078|ref|YP_001434874.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|156937078|ref|YP_001434874.1| - 0.044 13.4 0.2 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 MarR family DUF2250 PF10007.4 gi|156937078|ref|YP_001434874.1| - 0.083 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|156937078|ref|YP_001434874.1| - 0.091 12.5 0.0 2 8.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain dsDNA_bind PF01984.15 gi|156937079|ref|YP_001434875.1| - 2.7e-28 98.0 13.3 3.1e-28 97.8 9.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|156937079|ref|YP_001434875.1| - 0.0045 16.0 8.4 0.0047 15.9 5.9 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 DUF826 PF05696.6 gi|156937079|ref|YP_001434875.1| - 0.44 10.7 2.5 3.8 7.7 0.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF826) Ribosomal_L39 PF00832.15 gi|156937080|ref|YP_001434876.1| - 5.4e-19 67.3 15.4 6.3e-19 67.1 10.7 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Nterm_IS4 PF13006.2 gi|156937080|ref|YP_001434876.1| - 0.022 14.7 0.2 0.023 14.6 0.1 1.1 1 0 0 1 1 1 0 Insertion element 4 transposase N-terminal Ribosomal_L31e PF01198.14 gi|156937081|ref|YP_001434877.1| - 5.8e-26 89.9 0.2 6.8e-26 89.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|156937082|ref|YP_001434878.1| - 2.1e-71 239.1 1.7 2.5e-71 238.9 1.2 1.0 1 0 0 1 1 1 1 eIF-6 family NTP_transferase PF00483.18 gi|156937083|ref|YP_001434879.1| - 3.9e-45 154.0 0.0 4.6e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|156937083|ref|YP_001434879.1| - 4.2e-15 56.1 0.0 5.9e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|156937083|ref|YP_001434879.1| - 0.019 14.4 0.1 0.044 13.3 0.0 1.6 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|156937083|ref|YP_001434879.1| - 0.075 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Ribosomal_S26e PF01283.14 gi|156937084|ref|YP_001434880.1| - 3.9e-34 117.3 2.9 4.2e-34 117.2 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|156937084|ref|YP_001434880.1| - 0.023 14.5 1.1 0.13 12.0 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|156937084|ref|YP_001434880.1| - 0.041 13.5 0.2 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF164 PF02591.10 gi|156937084|ref|YP_001434880.1| - 0.26 11.1 2.9 0.41 10.5 0.1 2.4 2 1 0 2 2 2 0 Putative zinc ribbon domain Methyltrn_RNA_2 PF04013.7 gi|156937085|ref|YP_001434881.1| - 1.1e-35 123.0 0.0 1.9e-35 122.1 0.0 1.4 1 1 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Hydantoinase_B PF02538.9 gi|156937086|ref|YP_001434882.1| - 3.9e-118 394.9 0.0 4.7e-118 394.6 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF1136 PF06582.7 gi|156937086|ref|YP_001434882.1| - 0.2 11.3 0.8 6.4 6.5 0.1 2.7 2 0 0 2 2 2 0 Repeat of unknown function (DUF1136) KaiC PF06745.8 gi|156937087|ref|YP_001434883.1| - 1e-86 289.7 0.0 1.2e-86 289.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|156937087|ref|YP_001434883.1| - 2.4e-09 36.8 0.0 4.4e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|156937087|ref|YP_001434883.1| - 3.1e-07 29.1 0.0 5.6e-07 28.2 0.0 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|156937087|ref|YP_001434883.1| - 0.002 17.8 0.1 0.0056 16.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain MEDS PF14417.1 gi|156937087|ref|YP_001434883.1| - 0.01 14.8 0.0 0.039 13.0 0.0 1.7 1 1 1 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF2075 PF09848.4 gi|156937087|ref|YP_001434883.1| - 0.024 13.6 0.0 0.033 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|156937087|ref|YP_001434883.1| - 0.036 12.9 0.0 0.07 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DnaB_C PF03796.10 gi|156937087|ref|YP_001434883.1| - 0.06 12.2 0.0 0.095 11.5 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain HutP PF09021.6 gi|156937087|ref|YP_001434883.1| - 0.1 12.8 0.0 0.29 11.3 0.0 1.7 2 0 0 2 2 2 0 HutP AAA_14 PF13173.1 gi|156937087|ref|YP_001434883.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|156937087|ref|YP_001434883.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|156937087|ref|YP_001434883.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain Methyltransf_26 PF13659.1 gi|156937088|ref|YP_001434884.1| - 1.1e-07 31.8 0.7 3e-07 30.4 0.5 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156937088|ref|YP_001434884.1| - 5.2e-05 22.6 0.6 0.003 16.9 0.4 2.1 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|156937088|ref|YP_001434884.1| - 0.00044 20.7 0.0 0.00062 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|156937088|ref|YP_001434884.1| - 0.0065 15.6 0.2 0.0093 15.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|156937088|ref|YP_001434884.1| - 0.014 14.9 0.1 0.34 10.4 0.1 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|156937088|ref|YP_001434884.1| - 0.044 13.3 0.1 0.069 12.7 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|156937088|ref|YP_001434884.1| - 0.12 12.1 0.1 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Peptidase_M24 PF00557.19 gi|156937089|ref|YP_001434885.1| - 1.4e-37 129.2 0.0 1.7e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 AFOR_N PF02730.10 gi|156937090|ref|YP_001434886.1| - 1.2e-17 63.9 0.0 2.2e-17 63.0 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|156937090|ref|YP_001434886.1| - 6.7e-16 57.9 0.0 2.4e-15 56.1 0.0 1.6 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Trm112p PF03966.11 gi|156937091|ref|YP_001434887.1| - 1.9e-15 56.9 1.3 2.8e-15 56.4 0.9 1.3 1 0 0 1 1 1 1 Trm112p-like protein PhnA_Zn_Ribbon PF08274.7 gi|156937091|ref|YP_001434887.1| - 0.012 15.3 8.9 0.1 12.4 3.3 2.9 2 1 0 2 2 2 0 PhnA Zinc-Ribbon V4R PF02830.13 gi|156937091|ref|YP_001434887.1| - 0.015 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 V4R domain DZR PF12773.2 gi|156937091|ref|YP_001434887.1| - 0.061 13.1 6.9 0.68 9.8 4.8 2.2 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|156937091|ref|YP_001434887.1| - 0.36 11.2 7.4 1.3 9.5 0.0 3.5 4 0 0 4 4 4 0 C2H2-type zinc finger DUF35_N PF12172.3 gi|156937091|ref|YP_001434887.1| - 0.39 10.6 0.1 0.39 10.6 0.1 2.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_3 PF14369.1 gi|156937091|ref|YP_001434887.1| - 0.88 9.6 5.3 4.5 7.3 0.0 2.7 2 1 0 2 2 2 0 zinc-finger Prok-RING_1 PF14446.1 gi|156937091|ref|YP_001434887.1| - 1.1 9.0 4.9 2.9 7.6 1.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|156937091|ref|YP_001434887.1| - 1.2 8.7 0.0 1.2 8.7 0.0 4.0 5 0 0 5 5 5 0 zinc-ribbon domain MFS_1 PF07690.11 gi|156937092|ref|YP_001434888.1| - 2.8e-09 36.1 44.2 5e-08 32.0 29.2 2.9 1 1 0 1 1 1 1 Major Facilitator Superfamily TAF PF02969.12 gi|156937093|ref|YP_001434889.1| - 0.02 14.8 0.0 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 TATA box binding protein associated factor (TAF) Radical_SAM PF04055.16 gi|156937094|ref|YP_001434890.1| - 0.0012 19.0 4.9 0.0041 17.2 0.5 2.8 2 1 0 2 2 2 1 Radical SAM superfamily Rho_N PF07498.7 gi|156937094|ref|YP_001434890.1| - 0.28 10.9 2.9 4.6 7.0 0.0 2.6 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain UDG PF03167.14 gi|156937095|ref|YP_001434891.1| - 3.7e-42 143.3 0.0 4.5e-42 143.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MFS_1 PF07690.11 gi|156937096|ref|YP_001434892.1| - 3.1e-15 55.7 38.6 1.2e-14 53.8 26.8 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily ACT_6 PF13740.1 gi|156937097|ref|YP_001434893.1| - 9.1e-20 70.1 0.8 1.1e-19 69.9 0.5 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|156937097|ref|YP_001434893.1| - 2.2e-11 42.9 0.8 3e-11 42.5 0.5 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|156937097|ref|YP_001434893.1| - 2.6e-06 26.8 0.9 3.6e-06 26.3 0.6 1.4 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|156937097|ref|YP_001434893.1| - 6.4e-06 26.4 0.5 9.7e-06 25.8 0.2 1.5 2 0 0 2 2 2 1 ACT domain DUF1456 PF07308.8 gi|156937097|ref|YP_001434893.1| - 0.11 12.5 0.1 0.18 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1456) Aconitase_C PF00694.14 gi|156937098|ref|YP_001434894.1| - 1.7e-19 70.2 0.2 5e-19 68.7 0.1 1.7 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|156937098|ref|YP_001434894.1| - 0.0014 18.1 0.1 0.017 14.5 0.1 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Lysine_decarbox PF03641.9 gi|156937099|ref|YP_001434895.1| - 6.1e-05 22.8 0.1 6.7e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase KaiC PF06745.8 gi|156937100|ref|YP_001434896.1| - 1.8e-56 190.7 0.6 2.2e-56 190.5 0.4 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|156937100|ref|YP_001434896.1| - 1.5e-11 44.0 0.0 2.3e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|156937100|ref|YP_001434896.1| - 6e-06 25.3 0.0 9.3e-06 24.7 0.0 1.4 1 0 0 1 1 1 1 Rad51 GvpD PF07088.6 gi|156937100|ref|YP_001434896.1| - 9.2e-06 24.2 0.1 2.4e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|156937100|ref|YP_001434896.1| - 2.1e-05 24.0 0.0 4e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 IstB-like ATP binding protein PAXNEB PF05625.6 gi|156937100|ref|YP_001434896.1| - 0.00098 18.0 0.1 0.0079 15.0 0.1 1.9 1 1 1 2 2 2 1 PAXNEB protein AAA PF00004.24 gi|156937100|ref|YP_001434896.1| - 0.0031 17.7 0.1 0.0072 16.5 0.1 1.6 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) RecA PF00154.16 gi|156937100|ref|YP_001434896.1| - 0.0046 16.0 0.3 0.0078 15.3 0.0 1.5 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_19 PF13245.1 gi|156937100|ref|YP_001434896.1| - 0.0063 16.2 0.1 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|156937100|ref|YP_001434896.1| - 0.0088 16.1 0.0 0.017 15.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|156937100|ref|YP_001434896.1| - 0.011 16.0 0.0 0.023 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|156937100|ref|YP_001434896.1| - 0.021 13.8 0.2 0.034 13.1 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|156937100|ref|YP_001434896.1| - 0.031 14.1 0.0 0.082 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|156937100|ref|YP_001434896.1| - 0.033 13.0 0.0 0.054 12.3 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_28 PF13521.1 gi|156937100|ref|YP_001434896.1| - 0.048 13.6 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|156937100|ref|YP_001434896.1| - 0.052 12.4 0.0 0.079 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.11 gi|156937100|ref|YP_001434896.1| - 0.063 12.5 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DUF1020 PF06255.8 gi|156937100|ref|YP_001434896.1| - 0.078 12.1 0.1 0.14 11.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1020) AAA_10 PF12846.2 gi|156937100|ref|YP_001434896.1| - 0.1 12.0 0.0 0.23 10.8 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|156937100|ref|YP_001434896.1| - 0.1 12.4 0.2 0.4 10.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|156937100|ref|YP_001434896.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|156937100|ref|YP_001434896.1| - 0.16 11.5 1.6 0.27 10.7 0.3 2.1 2 1 0 2 2 2 0 AAA domain PDT PF00800.13 gi|156937101|ref|YP_001434897.1| - 2.3e-55 186.9 0.0 3e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|156937101|ref|YP_001434897.1| - 8.8e-10 37.8 0.0 4.1e-09 35.7 0.0 2.1 1 1 1 2 2 2 1 ACT domain PASTA PF03793.14 gi|156937101|ref|YP_001434897.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 PASTA domain AsnC_trans_reg PF01037.16 gi|156937102|ref|YP_001434898.1| - 1.4e-11 43.9 0.1 1.6e-11 43.7 0.1 1.1 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|156937102|ref|YP_001434898.1| - 0.044 13.5 0.0 0.05 13.3 0.0 1.2 1 0 0 1 1 1 0 GYD domain ACT_4 PF13291.1 gi|156937102|ref|YP_001434898.1| - 0.075 13.3 0.2 0.5 10.7 0.2 2.0 1 1 1 2 2 2 0 ACT domain DUF1743 PF08489.6 gi|156937103|ref|YP_001434899.1| - 1.6e-07 31.0 0.0 4.9e-07 29.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.2 gi|156937103|ref|YP_001434899.1| - 0.0012 18.6 1.3 0.0012 18.6 0.9 2.4 3 0 0 3 3 2 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|156937103|ref|YP_001434899.1| - 0.029 14.3 3.4 6.4 6.8 0.0 3.2 3 0 0 3 3 3 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|156937103|ref|YP_001434899.1| - 0.047 13.3 1.9 0.09 12.4 1.3 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|156937103|ref|YP_001434899.1| - 0.047 13.5 0.9 0.11 12.3 0.6 1.5 1 0 0 1 1 1 0 Double zinc ribbon Sulfotransfer_3 PF13469.1 gi|156937103|ref|YP_001434899.1| - 0.08 13.8 3.1 0.44 11.4 2.4 1.9 1 1 0 1 1 1 0 Sulfotransferase family zf-C4_Topoisom PF01396.14 gi|156937103|ref|YP_001434899.1| - 0.12 11.9 4.0 0.12 11.8 0.5 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger IBR PF01485.16 gi|156937103|ref|YP_001434899.1| - 0.14 12.0 2.2 0.19 11.6 0.3 2.0 2 0 0 2 2 2 0 IBR domain zf-NADH-PPase PF09297.6 gi|156937103|ref|YP_001434899.1| - 0.24 10.9 3.0 0.66 9.5 2.1 1.7 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.2 gi|156937103|ref|YP_001434899.1| - 1.7 8.6 5.1 1.3 9.0 1.6 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.1 gi|156937103|ref|YP_001434899.1| - 2.2 7.6 9.1 0.26 10.5 2.6 2.3 2 1 0 2 2 2 0 zinc-ribbon domain AIRS_C PF02769.17 gi|156937105|ref|YP_001434901.1| - 3.8e-18 65.9 0.1 7.7e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|156937105|ref|YP_001434901.1| - 7.7e-11 42.0 0.4 2.6e-10 40.3 0.2 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain bPH_2 PF03703.9 gi|156937106|ref|YP_001434902.1| - 7.7e-07 29.0 0.0 1.2e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain CytochromB561_N PF09786.4 gi|156937106|ref|YP_001434902.1| - 0.46 8.8 2.1 0.51 8.7 1.4 1.1 1 0 0 1 1 1 0 Cytochrome B561, N terminal DUF4131 PF13567.1 gi|156937106|ref|YP_001434902.1| - 4.4 6.6 5.7 6.5 6.1 3.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) HGTP_anticodon PF03129.15 gi|156937107|ref|YP_001434903.1| - 6.2e-19 67.7 1.7 1.7e-18 66.3 0.5 2.2 2 0 0 2 2 2 1 Anticodon binding domain tRNA-Thr_ED PF08915.6 gi|156937107|ref|YP_001434903.1| - 1.5e-10 41.1 1.1 2.7e-10 40.3 0.0 2.0 3 0 0 3 3 3 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|156937107|ref|YP_001434903.1| - 3.4e-06 26.7 0.1 5.1e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Cytochrom_C_asm PF01578.15 gi|156937108|ref|YP_001434904.1| - 2.6e-16 59.8 19.1 2.6e-16 59.8 13.3 5.1 3 1 1 4 4 4 1 Cytochrome C assembly protein Peptidase_M20 PF01546.23 gi|156937109|ref|YP_001434905.1| - 4.7e-29 101.2 0.0 7.9e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|156937109|ref|YP_001434905.1| - 3.4e-18 65.4 0.0 5.8e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Thioredoxin PF00085.15 gi|156937110|ref|YP_001434906.1| - 6.7e-12 45.0 0.0 1.3e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|156937110|ref|YP_001434906.1| - 2.3e-09 37.4 0.6 6.8e-08 32.6 0.4 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain DsbD PF02683.10 gi|156937110|ref|YP_001434906.1| - 0.00023 20.8 14.0 0.00051 19.7 9.6 1.6 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_8 PF13905.1 gi|156937110|ref|YP_001434906.1| - 0.0014 18.6 0.1 0.43 10.7 0.1 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|156937110|ref|YP_001434906.1| - 0.0015 18.3 0.0 0.017 14.9 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|156937110|ref|YP_001434906.1| - 0.0099 15.8 0.1 0.75 9.7 0.0 2.4 1 1 1 2 2 2 1 Thioredoxin Cytochrome_CBB3 PF13442.1 gi|156937110|ref|YP_001434906.1| - 0.023 14.8 0.0 0.052 13.7 0.0 1.7 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III Redoxin PF08534.5 gi|156937110|ref|YP_001434906.1| - 0.09 12.3 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Redoxin Thioredoxin_7 PF13899.1 gi|156937110|ref|YP_001434906.1| - 0.11 12.5 0.1 0.27 11.2 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin-like GHMP_kinases_N PF00288.21 gi|156937111|ref|YP_001434907.1| - 0.097 12.7 1.4 0.21 11.7 1.0 1.6 1 1 0 1 1 1 0 GHMP kinases N terminal domain HhH-GPD PF00730.20 gi|156937112|ref|YP_001434908.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Met_10 PF02475.11 gi|156937113|ref|YP_001434909.1| - 7.1e-52 175.9 0.2 1.1e-51 175.2 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|156937113|ref|YP_001434909.1| - 3.6e-11 43.1 0.0 5.8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|156937113|ref|YP_001434909.1| - 5.7e-09 35.6 0.0 9.8e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|156937113|ref|YP_001434909.1| - 1.9e-08 34.0 0.0 3e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937113|ref|YP_001434909.1| - 9e-08 32.6 0.0 1.8e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156937113|ref|YP_001434909.1| - 1.9e-07 30.6 0.0 3.2e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|156937113|ref|YP_001434909.1| - 2.2e-07 30.3 0.0 4.3e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|156937113|ref|YP_001434909.1| - 2.4e-07 30.0 0.3 4.1e-07 29.2 0.2 1.4 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|156937113|ref|YP_001434909.1| - 7.2e-07 28.8 0.0 1.2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|156937113|ref|YP_001434909.1| - 6e-06 26.6 0.0 1.9e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|156937113|ref|YP_001434909.1| - 8.8e-06 25.2 0.0 1.7e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_16 PF10294.4 gi|156937113|ref|YP_001434909.1| - 0.00046 19.6 0.0 0.00077 18.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltrans_SAM PF10672.4 gi|156937113|ref|YP_001434909.1| - 0.001 17.9 0.0 0.0014 17.5 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase UPF0020 PF01170.13 gi|156937113|ref|YP_001434909.1| - 0.0011 18.5 0.0 0.0033 17.0 0.0 1.9 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.1 gi|156937113|ref|YP_001434909.1| - 0.0011 19.7 0.0 0.0026 18.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|156937113|ref|YP_001434909.1| - 0.0012 18.5 0.0 0.0028 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain DUF2431 PF10354.4 gi|156937113|ref|YP_001434909.1| - 0.0053 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2431) Ubie_methyltran PF01209.13 gi|156937113|ref|YP_001434909.1| - 0.0094 15.0 0.1 0.015 14.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|156937113|ref|YP_001434909.1| - 0.013 16.0 0.0 0.024 15.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.12 gi|156937113|ref|YP_001434909.1| - 0.04 13.0 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Fibrillarin PF01269.12 gi|156937113|ref|YP_001434909.1| - 0.054 12.4 0.0 0.077 11.8 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Med20 PF08612.6 gi|156937113|ref|YP_001434909.1| - 0.075 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 TATA-binding related factor (TRF) of subunit 20 of Mediator complex MethyltransfD12 PF02086.10 gi|156937113|ref|YP_001434909.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase CMAS PF02353.15 gi|156937116|ref|YP_001434912.1| - 1.5e-08 34.0 0.5 3.4e-08 32.9 0.1 1.6 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|156937116|ref|YP_001434912.1| - 3.1e-08 33.6 0.0 5e-08 32.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937116|ref|YP_001434912.1| - 3.9e-08 33.8 0.0 9.3e-08 32.6 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain DOT1 PF08123.8 gi|156937116|ref|YP_001434912.1| - 1.9e-07 30.5 0.0 3.1e-06 26.6 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.8 gi|156937116|ref|YP_001434912.1| - 6.4e-05 22.2 0.1 8.9e-05 21.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|156937116|ref|YP_001434912.1| - 0.00013 21.0 0.0 0.00017 20.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|156937116|ref|YP_001434912.1| - 0.00015 21.3 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|156937116|ref|YP_001434912.1| - 0.00016 21.2 0.2 0.00027 20.5 0.1 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|156937116|ref|YP_001434912.1| - 0.0002 21.6 0.0 0.00028 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|156937116|ref|YP_001434912.1| - 0.0016 18.8 0.0 0.0024 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|156937116|ref|YP_001434912.1| - 0.012 15.2 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein MetW PF07021.7 gi|156937116|ref|YP_001434912.1| - 0.012 14.9 0.2 0.019 14.3 0.1 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.9 gi|156937116|ref|YP_001434912.1| - 0.025 13.9 0.1 0.035 13.4 0.1 1.1 1 0 0 1 1 1 0 Methyltransferase small domain UPF0020 PF01170.13 gi|156937116|ref|YP_001434912.1| - 0.029 13.9 0.0 0.041 13.4 0.0 1.1 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|156937116|ref|YP_001434912.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA methylase GTP_EFTU PF00009.22 gi|156937117|ref|YP_001434913.1| - 6.8e-41 139.7 0.0 1e-40 139.1 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|156937117|ref|YP_001434913.1| - 6.8e-29 99.7 0.0 1.5e-28 98.6 0.0 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|156937117|ref|YP_001434913.1| - 5.8e-07 29.5 5.3 7e-07 29.2 0.9 2.8 3 0 0 3 3 3 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|156937117|ref|YP_001434913.1| - 9.1e-05 21.9 0.3 0.42 10.0 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|156937117|ref|YP_001434913.1| - 0.00053 19.9 0.0 0.0013 18.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|156937117|ref|YP_001434913.1| - 0.0031 16.8 1.2 1.2 8.3 0.2 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|156937117|ref|YP_001434913.1| - 0.079 13.4 0.0 0.18 12.2 0.0 1.7 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|156937117|ref|YP_001434913.1| - 0.1 12.4 0.0 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 Dynamin family ALAD PF00490.16 gi|156937118|ref|YP_001434914.1| - 1.7e-147 490.5 0.0 1.9e-147 490.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF2560 PF10834.3 gi|156937118|ref|YP_001434914.1| - 0.018 15.0 0.1 0.33 10.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2560) AIM24 PF01987.12 gi|156937119|ref|YP_001434915.1| - 3.8e-50 170.3 0.0 4.3e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Cas_DxTHG PF09455.5 gi|156937120|ref|YP_001434916.1| - 4.5e-16 58.9 26.5 5.7e-15 55.3 18.3 2.6 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Arfaptin PF06456.8 gi|156937120|ref|YP_001434916.1| - 0.0036 16.6 2.2 0.0036 16.6 1.6 2.0 2 0 0 2 2 2 1 Arfaptin-like domain RAMPs PF03787.10 gi|156937121|ref|YP_001434917.1| - 1.7e-26 93.3 0.0 2.1e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily DUF3692 PF12469.3 gi|156937122|ref|YP_001434918.1| - 1.2e-31 109.3 0.1 1.3e-30 105.9 0.0 2.8 3 0 0 3 3 3 1 CRISPR-associated protein Cas_Cmr3 PF09700.5 gi|156937123|ref|YP_001434919.1| - 0.00013 21.5 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) CTP_synth_N PF06418.9 gi|156937125|ref|YP_001434921.1| - 4.3e-113 376.9 0.1 6.9e-113 376.3 0.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|156937125|ref|YP_001434921.1| - 6.4e-45 152.9 0.0 1.1e-44 152.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|156937125|ref|YP_001434921.1| - 4.8e-11 42.5 0.0 9.6e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|156937125|ref|YP_001434921.1| - 0.0016 17.8 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|156937125|ref|YP_001434921.1| - 0.0027 17.3 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Cas_Csa5 PF09702.5 gi|156937125|ref|YP_001434921.1| - 0.02 14.9 0.1 0.045 13.8 0.1 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) AAA_31 PF13614.1 gi|156937125|ref|YP_001434921.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Radical_SAM PF04055.16 gi|156937126|ref|YP_001434922.1| - 3.9e-12 46.6 0.0 7.4e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|156937126|ref|YP_001434922.1| - 9.2e-10 38.7 0.0 1.8e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|156937126|ref|YP_001434922.1| - 8.7e-07 28.9 0.0 1.8e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Ribosomal_L12 PF00542.14 gi|156937127|ref|YP_001434923.1| - 0.024 14.6 0.8 3.2 7.8 0.0 2.4 1 1 1 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain AIRC PF00731.15 gi|156937128|ref|YP_001434924.1| - 2.3e-48 163.3 0.3 2.6e-48 163.1 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase TIMELESS PF04821.9 gi|156937128|ref|YP_001434924.1| - 0.02 14.1 0.0 0.022 13.9 0.0 1.1 1 0 0 1 1 1 0 Timeless protein KaiB PF07689.7 gi|156937128|ref|YP_001434924.1| - 0.069 12.6 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 KaiB domain DUF2206 PF09971.4 gi|156937129|ref|YP_001434925.1| - 0.1 11.3 0.4 0.13 11.0 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Endonuclease_5 PF04493.9 gi|156937131|ref|YP_001434927.1| - 1e-50 171.9 0.0 1.3e-50 171.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|156937131|ref|YP_001434927.1| - 0.022 13.8 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF99 polyprenyl_synt PF00348.12 gi|156937132|ref|YP_001434928.1| - 3.7e-38 130.8 0.0 4.9e-38 130.4 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase UbiA PF01040.13 gi|156937132|ref|YP_001434928.1| - 0.049 12.8 0.2 6.1 5.9 0.1 2.1 2 0 0 2 2 2 0 UbiA prenyltransferase family DUF2748 PF10871.3 gi|156937132|ref|YP_001434928.1| - 0.17 10.2 0.0 0.27 9.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2748) Thioredoxin PF00085.15 gi|156937133|ref|YP_001434929.1| - 4.2e-10 39.2 0.0 5.7e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|156937133|ref|YP_001434929.1| - 1.5e-06 28.4 0.3 1.6e-05 25.0 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|156937133|ref|YP_001434929.1| - 3.1e-05 23.9 0.0 0.032 14.3 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.1 gi|156937133|ref|YP_001434929.1| - 0.0017 17.8 0.0 0.0028 17.1 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.1 gi|156937133|ref|YP_001434929.1| - 0.0097 15.7 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|156937133|ref|YP_001434929.1| - 0.042 13.4 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Redoxin PF08534.5 gi|156937133|ref|YP_001434929.1| - 0.064 12.8 0.1 3.5 7.1 0.0 2.1 1 1 1 2 2 2 0 Redoxin Radical_SAM PF04055.16 gi|156937134|ref|YP_001434930.1| - 7.1e-11 42.5 0.0 2.3e-10 40.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|156937134|ref|YP_001434930.1| - 0.0024 17.9 0.0 0.048 13.7 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain PEPcase_2 PF14010.1 gi|156937135|ref|YP_001434931.1| - 5.4e-145 483.4 0.0 6.1e-145 483.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|156937135|ref|YP_001434931.1| - 0.00055 17.9 0.3 0.0017 16.2 0.0 1.9 3 0 0 3 3 3 1 Phosphoenolpyruvate carboxylase THUMP PF02926.12 gi|156937136|ref|YP_001434932.1| - 1.7e-11 44.2 1.7 1.7e-11 44.2 1.2 2.0 2 1 0 2 2 2 1 THUMP domain TFIIA_gamma_N PF02268.11 gi|156937136|ref|YP_001434932.1| - 0.0048 16.4 0.0 0.03 13.9 0.0 2.0 2 0 0 2 2 2 1 Transcription initiation factor IIA, gamma subunit, helical domain Peptidase_M15_2 PF05951.8 gi|156937136|ref|YP_001434932.1| - 0.016 14.6 0.0 0.039 13.4 0.0 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF882) DUF2680 PF10925.3 gi|156937136|ref|YP_001434932.1| - 0.071 12.9 0.1 0.23 11.3 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) zf-IS66 PF13005.2 gi|156937136|ref|YP_001434932.1| - 0.55 10.2 4.3 2.7 8.0 0.0 3.4 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Inositol_P PF00459.20 gi|156937137|ref|YP_001434933.1| - 2.6e-22 79.3 0.0 4.1e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|156937137|ref|YP_001434933.1| - 0.073 11.8 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase B3_4 PF03483.12 gi|156937138|ref|YP_001434934.1| - 1.4e-27 96.2 0.0 2.1e-27 95.6 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain L_lactis_ph-MCP PF06673.6 gi|156937138|ref|YP_001434934.1| - 0.0026 16.6 0.1 0.0036 16.1 0.0 1.2 1 0 0 1 1 1 1 Lactococcus lactis bacteriophage major capsid protein DAO PF01266.19 gi|156937139|ref|YP_001434935.1| - 8.1e-13 47.9 0.7 4.4e-06 25.8 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|156937139|ref|YP_001434935.1| - 2.4e-11 43.8 0.4 0.00061 19.7 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|156937139|ref|YP_001434935.1| - 1.5e-08 33.5 0.1 0.00028 19.4 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|156937139|ref|YP_001434935.1| - 7e-08 31.7 1.3 0.00014 20.9 0.0 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|156937139|ref|YP_001434935.1| - 9.6e-08 31.2 3.1 8.7e-05 21.5 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|156937139|ref|YP_001434935.1| - 3.3e-05 23.1 0.1 5.3e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|156937139|ref|YP_001434935.1| - 8.5e-05 21.7 0.2 0.00031 19.9 0.0 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|156937139|ref|YP_001434935.1| - 0.00022 21.3 0.1 0.042 13.9 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|156937139|ref|YP_001434935.1| - 0.00042 20.2 0.3 0.0017 18.3 0.2 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|156937139|ref|YP_001434935.1| - 0.0029 16.5 0.0 0.0043 16.0 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|156937139|ref|YP_001434935.1| - 0.0048 15.5 0.1 0.0075 14.9 0.1 1.3 1 0 0 1 1 1 1 Tryptophan halogenase ThiF PF00899.16 gi|156937139|ref|YP_001434935.1| - 0.005 16.6 0.5 0.03 14.1 0.1 2.4 2 0 0 2 2 2 1 ThiF family Pyr_redox PF00070.22 gi|156937139|ref|YP_001434935.1| - 0.04 14.3 3.4 7.2 7.0 0.1 3.0 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|156937139|ref|YP_001434935.1| - 0.043 13.5 0.1 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|156937139|ref|YP_001434935.1| - 0.046 12.8 0.4 0.11 11.5 0.1 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF3798 PF12683.2 gi|156937139|ref|YP_001434935.1| - 0.098 11.7 0.0 0.8 8.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3798) TMP-TENI PF02581.12 gi|156937139|ref|YP_001434935.1| - 0.1 11.6 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF1013 PF06242.6 gi|156937139|ref|YP_001434935.1| - 0.15 12.0 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) Adenylsucc_synt PF00709.16 gi|156937140|ref|YP_001434936.1| - 1.4e-69 234.8 0.6 5.3e-32 111.0 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase tRNA-synt_1b PF00579.20 gi|156937141|ref|YP_001434937.1| - 1.8e-35 122.5 0.1 4.4e-34 117.9 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) MttA_Hcf106 PF02416.11 gi|156937142|ref|YP_001434938.1| - 1.8e-13 49.3 3.6 3.7e-13 48.3 2.5 1.8 1 1 0 1 1 1 1 mttA/Hcf106 family SAP PF02037.22 gi|156937142|ref|YP_001434938.1| - 0.0053 16.2 1.2 0.012 15.0 0.9 1.7 1 1 0 1 1 1 1 SAP domain Peptidase_C39 PF03412.10 gi|156937142|ref|YP_001434938.1| - 0.089 12.6 0.1 0.23 11.2 0.1 1.6 1 1 1 2 2 2 0 Peptidase C39 family TIP49 PF06068.8 gi|156937142|ref|YP_001434938.1| - 0.12 11.0 1.3 0.15 10.7 0.9 1.0 1 0 0 1 1 1 0 TIP49 C-terminus UPF0150 PF03681.10 gi|156937142|ref|YP_001434938.1| - 0.2 11.3 1.0 2.7 7.7 0.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0150) Arc_PepC PF06819.6 gi|156937142|ref|YP_001434938.1| - 0.21 11.5 3.6 0.15 11.9 1.1 1.7 1 1 1 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain IF2_N PF04760.10 gi|156937142|ref|YP_001434938.1| - 0.37 10.4 3.1 0.3 10.7 0.2 2.2 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region RHH_1 PF01402.16 gi|156937142|ref|YP_001434938.1| - 0.93 9.4 3.0 5.9 6.9 0.1 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Pribosyltran PF00156.22 gi|156937143|ref|YP_001434939.1| - 3.2e-22 78.5 0.2 5.5e-22 77.8 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|156937143|ref|YP_001434939.1| - 0.0025 17.0 0.3 0.027 13.6 0.1 1.7 1 1 1 2 2 2 2 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.15 gi|156937145|ref|YP_001434941.1| - 2.6e-43 147.6 0.8 3.1e-43 147.4 0.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily YbaB_DNA_bd PF02575.11 gi|156937145|ref|YP_001434941.1| - 0.064 13.1 0.2 6.1 6.8 0.0 2.4 2 0 0 2 2 2 0 YbaB/EbfC DNA-binding family Mrr_cat PF04471.7 gi|156937146|ref|YP_001434942.1| - 2.2e-06 27.4 0.0 3.2e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.12 gi|156937146|ref|YP_001434942.1| - 1.6e-05 24.7 0.6 3.4e-05 23.6 0.1 1.7 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 NERD PF08378.6 gi|156937146|ref|YP_001434942.1| - 2.4e-05 24.5 0.0 4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain Hjc PF01870.13 gi|156937146|ref|YP_001434942.1| - 0.0021 17.6 0.1 0.0034 16.9 0.1 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF234 PF03008.9 gi|156937146|ref|YP_001434942.1| - 0.018 15.1 0.2 0.035 14.2 0.2 1.5 1 1 0 1 1 1 0 Archaea bacterial proteins of unknown function SfsA PF03749.8 gi|156937148|ref|YP_001434944.1| - 3.4e-32 111.6 0.0 4.5e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein HTH_10 PF04967.7 gi|156937148|ref|YP_001434944.1| - 0.0095 15.4 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain cobW PF02492.14 gi|156937149|ref|YP_001434945.1| - 9.2e-34 116.4 0.0 1.1e-33 116.1 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|156937149|ref|YP_001434945.1| - 4.8e-05 22.2 0.0 0.093 11.4 0.0 2.1 2 0 0 2 2 2 2 ArgK protein NTPase_1 PF03266.10 gi|156937149|ref|YP_001434945.1| - 0.0016 18.2 0.1 0.0094 15.6 0.1 2.1 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|156937149|ref|YP_001434945.1| - 0.0023 17.9 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|156937149|ref|YP_001434945.1| - 0.0036 17.5 0.1 0.016 15.3 0.0 2.0 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|156937149|ref|YP_001434945.1| - 0.007 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|156937149|ref|YP_001434945.1| - 0.0091 15.7 0.1 0.022 14.4 0.0 1.8 2 1 1 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|156937149|ref|YP_001434945.1| - 0.011 15.4 0.1 0.039 13.7 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain DUF258 PF03193.11 gi|156937149|ref|YP_001434945.1| - 0.011 14.9 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|156937149|ref|YP_001434945.1| - 0.012 16.0 0.1 0.17 12.4 0.0 2.3 2 1 0 2 2 2 0 Miro-like protein Pox_A32 PF04665.7 gi|156937149|ref|YP_001434945.1| - 0.012 14.8 0.0 0.023 13.9 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein Zeta_toxin PF06414.7 gi|156937149|ref|YP_001434945.1| - 0.026 13.6 0.0 0.053 12.6 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin AAA_17 PF13207.1 gi|156937149|ref|YP_001434945.1| - 0.029 15.2 0.1 0.058 14.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|156937149|ref|YP_001434945.1| - 0.034 14.3 0.0 0.16 12.1 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|156937149|ref|YP_001434945.1| - 0.035 13.6 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|156937149|ref|YP_001434945.1| - 0.035 13.7 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|156937149|ref|YP_001434945.1| - 0.036 13.7 0.0 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|156937149|ref|YP_001434945.1| - 0.047 13.9 0.1 0.073 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|156937149|ref|YP_001434945.1| - 0.048 13.9 0.0 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.1 gi|156937149|ref|YP_001434945.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|156937149|ref|YP_001434945.1| - 0.08 12.9 0.0 0.24 11.3 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|156937149|ref|YP_001434945.1| - 0.083 12.3 0.0 0.43 9.9 0.0 2.0 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|156937149|ref|YP_001434945.1| - 0.086 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain FeoB_N PF02421.13 gi|156937149|ref|YP_001434945.1| - 0.089 12.0 0.0 12 5.1 0.0 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B HemN_C PF06969.11 gi|156937151|ref|YP_001434947.1| - 0.037 14.0 0.1 0.069 13.2 0.1 1.5 1 0 0 1 1 1 0 HemN C-terminal domain CxxCxxCC PF03692.10 gi|156937152|ref|YP_001434948.1| - 7e-09 36.0 0.1 1.1e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Pex19 PF04614.7 gi|156937152|ref|YP_001434948.1| - 0.047 13.3 0.2 0.058 13.0 0.1 1.1 1 0 0 1 1 1 0 Pex19 protein family 5-FTHF_cyc-lig PF01812.15 gi|156937154|ref|YP_001434950.1| - 5.1e-27 94.8 0.0 6.1e-27 94.6 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Mrr_N PF14338.1 gi|156937155|ref|YP_001434951.1| - 0.0039 17.2 0.1 0.075 13.1 0.1 2.3 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_24 PF13412.1 gi|156937155|ref|YP_001434951.1| - 0.008 15.5 0.2 0.034 13.5 0.1 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding tRNA-synt_2b PF00587.20 gi|156937156|ref|YP_001434952.1| - 2.1e-24 86.0 0.0 1.3e-23 83.5 0.0 2.1 2 1 1 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|156937156|ref|YP_001434952.1| - 9.3e-21 73.5 3.2 1.1e-20 73.3 1.5 1.7 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|156937156|ref|YP_001434952.1| - 6.7e-16 57.9 0.7 1.5e-15 56.8 0.5 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal RRF PF01765.14 gi|156937156|ref|YP_001434952.1| - 0.18 11.2 5.5 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 Ribosome recycling factor FBPase_3 PF01950.11 gi|156937157|ref|YP_001434953.1| - 2.1e-191 635.7 0.0 2.4e-191 635.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Baculo_PEP_C PF04513.7 gi|156937158|ref|YP_001434954.1| - 1.6e-06 27.9 35.4 0.00028 20.7 7.0 4.3 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.6 gi|156937158|ref|YP_001434954.1| - 1e-05 25.3 31.0 0.27 11.1 0.3 7.2 3 2 3 6 6 6 3 Flagella accessory protein C (FlaC) EzrA PF06160.7 gi|156937158|ref|YP_001434954.1| - 2.5e-05 22.6 32.3 0.00062 18.0 11.7 2.6 1 1 2 3 3 3 3 Septation ring formation regulator, EzrA Reo_sigmaC PF04582.7 gi|156937158|ref|YP_001434954.1| - 5.5e-05 22.5 21.9 0.014 14.5 3.0 3.2 1 1 2 3 3 3 3 Reovirus sigma C capsid protein IncA PF04156.9 gi|156937158|ref|YP_001434954.1| - 0.00011 21.8 44.7 0.003 17.1 8.5 4.6 2 1 3 5 5 5 3 IncA protein IFT57 PF10498.4 gi|156937158|ref|YP_001434954.1| - 0.00058 18.7 10.4 0.00058 18.7 7.2 3.5 2 1 2 4 4 4 2 Intra-flagellar transport protein 57 WEMBL PF05701.6 gi|156937158|ref|YP_001434954.1| - 0.00063 18.3 51.2 0.0073 14.8 15.4 2.5 2 1 1 3 3 2 2 Weak chloroplast movement under blue light DUF3584 PF12128.3 gi|156937158|ref|YP_001434954.1| - 0.00075 16.9 33.6 0.0027 15.1 9.6 2.7 2 1 1 3 3 3 2 Protein of unknown function (DUF3584) DUF1664 PF07889.7 gi|156937158|ref|YP_001434954.1| - 0.00086 19.1 27.2 0.011 15.5 3.4 4.4 2 1 4 6 6 5 4 Protein of unknown function (DUF1664) MscS_porin PF12795.2 gi|156937158|ref|YP_001434954.1| - 0.00098 18.5 40.6 0.002 17.4 7.6 3.7 2 1 0 3 3 3 2 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|156937158|ref|YP_001434954.1| - 0.0036 16.8 5.0 0.0036 16.8 3.5 4.0 2 1 3 5 5 4 4 Intermediate filament protein Mod_r PF07200.8 gi|156937158|ref|YP_001434954.1| - 0.0045 16.9 47.0 0.039 13.8 2.9 5.2 2 1 3 5 5 5 2 Modifier of rudimentary (Mod(r)) protein COG2 PF06148.6 gi|156937158|ref|YP_001434954.1| - 0.01 15.6 24.6 2.1 8.1 2.8 5.0 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 WXG100 PF06013.7 gi|156937158|ref|YP_001434954.1| - 0.011 15.7 11.8 2.3 8.2 0.2 5.2 2 1 3 5 5 5 0 Proteins of 100 residues with WXG DASH_Dam1 PF08653.5 gi|156937158|ref|YP_001434954.1| - 0.017 14.8 10.9 11 5.8 0.1 5.8 5 1 1 6 6 6 0 DASH complex subunit Dam1 Vps54 PF07928.7 gi|156937158|ref|YP_001434954.1| - 0.027 14.5 2.6 0.21 11.7 0.0 3.0 3 0 0 3 3 2 0 Vps54-like protein Erythro-docking PF09277.6 gi|156937158|ref|YP_001434954.1| - 0.029 14.0 0.0 1.5 8.5 0.0 3.2 2 0 0 2 2 2 0 Erythronolide synthase, docking DUF948 PF06103.6 gi|156937158|ref|YP_001434954.1| - 0.036 13.9 27.2 0.021 14.7 2.0 5.3 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) Cep57_MT_bd PF06657.8 gi|156937158|ref|YP_001434954.1| - 0.077 12.9 17.6 1.5 8.7 0.4 5.1 2 1 1 4 4 4 0 Centrosome microtubule-binding domain of Cep57 TPR_MLP1_2 PF07926.7 gi|156937158|ref|YP_001434954.1| - 0.078 12.7 43.7 0.07 12.8 8.0 4.8 2 1 2 4 4 4 0 TPR/MLP1/MLP2-like protein APG6 PF04111.7 gi|156937158|ref|YP_001434954.1| - 0.092 11.7 42.2 0.051 12.6 7.5 3.7 2 1 2 4 4 4 0 Autophagy protein Apg6 Tup_N PF08581.5 gi|156937158|ref|YP_001434954.1| - 0.11 12.6 24.0 0.28 11.3 2.4 4.5 3 1 1 4 4 4 0 Tup N-terminal CENP-F_leu_zip PF10473.4 gi|156937158|ref|YP_001434954.1| - 0.24 11.2 50.3 0.79 9.5 4.7 5.7 2 1 3 5 5 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3407 PF11887.3 gi|156937158|ref|YP_001434954.1| - 0.42 9.8 9.5 0.24 10.6 0.3 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3407) ATG16 PF08614.6 gi|156937158|ref|YP_001434954.1| - 0.66 9.7 40.6 0.48 10.2 7.2 4.3 2 1 3 5 5 5 0 Autophagy protein 16 (ATG16) V_ATPase_I PF01496.14 gi|156937158|ref|YP_001434954.1| - 0.76 7.5 28.1 7 4.3 11.0 2.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Mating_N PF12731.2 gi|156937158|ref|YP_001434954.1| - 0.81 9.5 7.4 2.2 8.2 0.5 3.7 1 1 1 3 3 3 0 Mating-type protein beta 1 DUF479 PF04336.7 gi|156937158|ref|YP_001434954.1| - 0.86 9.7 8.9 5.9 7.0 0.6 4.5 2 2 2 5 5 4 0 Protein of unknown function, DUF479 Spectrin PF00435.16 gi|156937158|ref|YP_001434954.1| - 0.93 9.8 31.6 0.19 12.0 3.0 5.2 2 1 2 5 5 5 0 Spectrin repeat Bacillus_HBL PF05791.6 gi|156937158|ref|YP_001434954.1| - 0.99 8.7 28.7 0.31 10.3 4.2 4.4 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) MCPsignal PF00015.16 gi|156937158|ref|YP_001434954.1| - 1.1 8.7 16.9 2.4 7.6 5.4 2.6 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Occludin_ELL PF07303.8 gi|156937158|ref|YP_001434954.1| - 1.4 9.7 20.3 1.6 9.5 2.2 4.5 1 1 4 5 5 5 0 Occludin homology domain Z1 PF10593.4 gi|156937158|ref|YP_001434954.1| - 1.5 7.9 14.1 1.3 8.1 1.4 2.9 2 1 1 3 3 3 0 Z1 domain DUF869 PF05911.6 gi|156937158|ref|YP_001434954.1| - 1.5 6.9 39.7 0.39 8.8 10.9 3.1 2 1 0 3 3 3 0 Plant protein of unknown function (DUF869) ApoO PF09769.4 gi|156937158|ref|YP_001434954.1| - 1.6 8.4 8.9 8.1 6.1 0.3 3.9 2 1 1 4 4 3 0 Apolipoprotein O PEP-utilisers_N PF05524.8 gi|156937158|ref|YP_001434954.1| - 2.6 7.8 17.4 10 5.9 0.3 5.0 3 2 0 4 4 4 0 PEP-utilising enzyme, N-terminal DUF1515 PF07439.6 gi|156937158|ref|YP_001434954.1| - 2.9 7.7 11.1 25 4.7 0.1 4.4 1 1 3 4 4 4 0 Protein of unknown function (DUF1515) Lectin_N PF03954.9 gi|156937158|ref|YP_001434954.1| - 3.2 7.1 20.5 0.78 9.1 2.6 3.6 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain DUF4404 PF14357.1 gi|156937158|ref|YP_001434954.1| - 3.2 8.2 35.8 0.21 12.0 1.0 6.8 3 1 3 7 7 6 0 Domain of unknown function (DUF4404) NPV_P10 PF05531.7 gi|156937158|ref|YP_001434954.1| - 3.3 8.0 26.0 1.2 9.3 0.3 5.7 2 1 4 6 6 5 0 Nucleopolyhedrovirus P10 protein Sec8_exocyst PF04048.9 gi|156937158|ref|YP_001434954.1| - 3.6 7.2 29.8 6.1 6.4 5.5 3.7 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain GAS PF13851.1 gi|156937158|ref|YP_001434954.1| - 3.8 6.6 49.4 0.12 11.5 6.2 4.4 2 1 2 4 4 4 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|156937158|ref|YP_001434954.1| - 4.2 5.9 48.7 0.032 12.8 9.2 3.3 2 1 2 4 4 4 0 Spc7 kinetochore protein YjcZ PF13990.1 gi|156937158|ref|YP_001434954.1| - 5.2 6.1 19.4 1.2 8.2 1.3 4.2 2 1 3 5 5 5 0 YjcZ-like protein Seryl_tRNA_N PF02403.17 gi|156937158|ref|YP_001434954.1| - 6.2 6.8 44.8 0.45 10.5 3.7 5.4 2 1 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain M_domain PF12938.2 gi|156937158|ref|YP_001434954.1| - 7.5 6.2 16.9 12 5.5 2.2 3.4 2 1 1 3 3 3 0 M domain of GW182 RNA_POL_M_15KD PF02150.11 gi|156937160|ref|YP_001434956.1| - 1.8e-06 27.5 0.2 2.6e-06 26.9 0.2 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|156937160|ref|YP_001434956.1| - 7.3e-05 22.1 2.0 0.15 11.5 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2387 PF09526.5 gi|156937160|ref|YP_001434956.1| - 0.00058 19.7 3.0 0.00084 19.2 2.1 1.3 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.1 gi|156937160|ref|YP_001434956.1| - 0.00072 18.7 1.0 0.0012 18.0 0.7 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.2 gi|156937160|ref|YP_001434956.1| - 0.0013 18.5 0.5 0.0022 17.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon Mu-like_Com PF10122.4 gi|156937160|ref|YP_001434956.1| - 0.0045 16.0 1.3 0.12 11.5 0.9 2.3 1 1 0 1 1 1 1 Mu-like prophage protein Com zf-C4_Topoisom PF01396.14 gi|156937160|ref|YP_001434956.1| - 0.0058 16.1 2.7 0.51 9.8 0.1 2.3 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger IBR PF01485.16 gi|156937160|ref|YP_001434956.1| - 0.013 15.4 0.6 0.024 14.5 0.4 1.5 1 0 0 1 1 1 0 IBR domain zf-ISL3 PF14690.1 gi|156937160|ref|YP_001434956.1| - 0.013 15.4 4.0 0.7 9.9 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|156937160|ref|YP_001434956.1| - 0.016 14.9 0.4 0.023 14.4 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RBB1NT PF08169.6 gi|156937160|ref|YP_001434956.1| - 0.017 15.0 0.8 0.03 14.2 0.1 1.6 1 1 1 2 2 2 0 RBB1NT (NUC162) domain zf-ribbon_3 PF13248.1 gi|156937160|ref|YP_001434956.1| - 0.017 14.2 6.3 0.22 10.7 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|156937160|ref|YP_001434956.1| - 0.02 14.4 0.3 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|156937160|ref|YP_001434956.1| - 0.021 14.3 3.6 1.1 8.8 0.4 2.2 1 1 1 2 2 2 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|156937160|ref|YP_001434956.1| - 0.028 14.0 0.6 0.058 13.0 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|156937160|ref|YP_001434956.1| - 0.029 14.3 2.8 0.14 12.1 2.0 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|156937160|ref|YP_001434956.1| - 0.032 14.0 1.1 1.5 8.6 1.1 2.1 1 1 1 2 2 2 0 zinc-ribbons CpXC PF14353.1 gi|156937160|ref|YP_001434956.1| - 0.032 14.1 2.2 0.048 13.6 0.0 1.9 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|156937160|ref|YP_001434956.1| - 0.038 13.5 3.4 0.14 11.7 2.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Hormone_6 PF00236.13 gi|156937160|ref|YP_001434956.1| - 0.047 13.5 1.0 0.053 13.3 0.7 1.1 1 0 0 1 1 1 0 Glycoprotein hormone FYDLN_acid PF09538.5 gi|156937160|ref|YP_001434956.1| - 0.048 14.2 2.9 0.12 12.9 2.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Auto_anti-p27 PF06677.7 gi|156937160|ref|YP_001434956.1| - 0.053 13.2 4.6 0.12 12.1 3.3 1.6 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|156937160|ref|YP_001434956.1| - 0.091 12.4 1.0 2.5 7.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|156937160|ref|YP_001434956.1| - 0.1 12.4 3.0 2.4 8.0 0.4 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF177 PF02620.12 gi|156937160|ref|YP_001434956.1| - 0.11 12.5 0.2 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized ACR, COG1399 DUF116 PF01976.12 gi|156937160|ref|YP_001434956.1| - 0.11 11.9 0.9 0.12 11.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF116 PhnA_Zn_Ribbon PF08274.7 gi|156937160|ref|YP_001434956.1| - 0.13 12.0 1.3 0.97 9.2 0.9 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|156937160|ref|YP_001434956.1| - 0.16 11.7 4.6 0.88 9.3 3.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF164 PF02591.10 gi|156937160|ref|YP_001434956.1| - 0.16 11.8 1.5 7.4 6.4 0.1 2.4 1 1 1 2 2 2 0 Putative zinc ribbon domain HypA PF01155.14 gi|156937160|ref|YP_001434956.1| - 0.21 11.2 1.2 0.42 10.2 0.8 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|156937160|ref|YP_001434956.1| - 0.35 11.1 2.0 3 8.2 1.3 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar VP_N-CPKC PF11475.3 gi|156937160|ref|YP_001434956.1| - 0.37 10.3 2.8 0.97 9.0 0.2 2.3 2 0 0 2 2 2 0 Virion protein N terminal domain Nop10p PF04135.7 gi|156937160|ref|YP_001434956.1| - 0.39 10.4 2.6 0.27 11.0 0.4 1.8 2 1 0 2 2 1 0 Nucleolar RNA-binding protein, Nop10p family Zn_Tnp_IS1595 PF12760.2 gi|156937160|ref|YP_001434956.1| - 0.44 10.3 4.1 0.76 9.6 0.8 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|156937160|ref|YP_001434956.1| - 0.5 10.6 3.4 2.7 8.3 2.3 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain TF_Zn_Ribbon PF08271.7 gi|156937160|ref|YP_001434956.1| - 0.64 9.3 3.1 2.3 7.6 2.1 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|156937160|ref|YP_001434956.1| - 0.74 9.5 7.2 17 5.2 5.3 2.3 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-FPG_IleRS PF06827.9 gi|156937160|ref|YP_001434956.1| - 0.78 9.4 5.4 6.1 6.5 1.0 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-CCHC_5 PF14787.1 gi|156937160|ref|YP_001434956.1| - 0.94 9.0 5.4 7.6 6.1 0.2 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger DUF329 PF03884.9 gi|156937160|ref|YP_001434956.1| - 0.97 9.0 5.7 1.4 8.5 0.2 2.5 2 1 1 3 3 2 0 Domain of unknown function (DUF329) DUF1451 PF07295.6 gi|156937160|ref|YP_001434956.1| - 2.5 7.8 5.2 3.6 7.3 0.0 2.4 1 1 1 3 3 3 0 Protein of unknown function (DUF1451) Ogr_Delta PF04606.7 gi|156937160|ref|YP_001434956.1| - 2.8 7.6 5.5 11 5.7 0.0 2.7 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger Cys_rich_KTR PF14205.1 gi|156937160|ref|YP_001434956.1| - 3.5 7.1 6.7 4.3 6.8 0.8 2.5 1 1 1 2 2 2 0 Cysteine-rich KTR zf-Mss51 PF13824.1 gi|156937160|ref|YP_001434956.1| - 4.6 7.1 6.1 0.48 10.3 0.6 2.0 2 1 1 3 3 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.11 gi|156937160|ref|YP_001434956.1| - 8 6.2 9.8 2.5 7.8 1.7 3.3 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2273 PF10031.4 gi|156937161|ref|YP_001434957.1| - 0.24 11.0 4.6 0.46 10.1 3.2 1.4 1 0 0 1 1 1 0 Small integral membrane protein (DUF2273) Radical_SAM PF04055.16 gi|156937162|ref|YP_001434958.1| - 2.2e-27 96.2 0.0 2.1e-26 93.0 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|156937162|ref|YP_001434958.1| - 3.7e-13 49.4 0.0 3.9e-12 46.0 0.0 2.2 2 0 0 2 2 2 1 B12 binding domain MobB PF03205.9 gi|156937163|ref|YP_001434959.1| - 1.2e-07 31.4 0.0 3.8e-07 29.8 0.0 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|156937163|ref|YP_001434959.1| - 0.0004 19.9 0.0 0.00061 19.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain CbiA PF01656.18 gi|156937163|ref|YP_001434959.1| - 0.031 13.6 0.0 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pur_DNA_glyco PF02245.11 gi|156937166|ref|YP_001434962.1| - 0.016 14.3 0.1 0.085 11.9 0.1 1.9 1 1 0 1 1 1 0 Methylpurine-DNA glycosylase (MPG) CARDB PF07705.6 gi|156937166|ref|YP_001434962.1| - 0.099 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 CARDB Sua5_yciO_yrdC PF01300.13 gi|156937167|ref|YP_001434963.1| - 7e-44 149.2 0.0 8.4e-44 148.9 0.0 1.1 1 0 0 1 1 1 1 Telomere recombination TatC PF00902.13 gi|156937168|ref|YP_001434964.1| - 1.2e-40 139.2 21.3 1.5e-40 138.9 14.8 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DUF3099 PF11298.3 gi|156937168|ref|YP_001434964.1| - 0.29 10.9 0.1 0.29 10.9 0.1 3.6 4 1 0 4 4 4 0 Protein of unknown function (DUF3099) NTPase_I-T PF01931.13 gi|156937169|ref|YP_001434965.1| - 1.2e-28 99.9 0.0 1.4e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 ACP_syn_III_C PF08541.5 gi|156937170|ref|YP_001434966.1| - 6e-15 55.0 0.0 2.5e-14 53.0 0.0 2.0 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|156937170|ref|YP_001434966.1| - 0.0019 17.8 1.2 0.0019 17.8 0.9 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|156937170|ref|YP_001434966.1| - 0.0063 16.0 0.0 0.0086 15.5 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Ketoacyl-synt_C PF02801.17 gi|156937170|ref|YP_001434966.1| - 0.019 14.8 0.0 8.5 6.2 0.0 3.1 2 1 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain HMG_CoA_synt_N PF01154.12 gi|156937170|ref|YP_001434966.1| - 0.043 13.3 0.0 0.083 12.4 0.0 1.5 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.5 gi|156937171|ref|YP_001434967.1| - 2.8e-06 26.8 0.2 0.0048 16.5 0.0 2.7 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.13 gi|156937171|ref|YP_001434967.1| - 3.1e-05 23.4 0.3 7.7e-05 22.1 0.1 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|156937171|ref|YP_001434967.1| - 8e-05 22.2 0.0 0.0002 20.9 0.0 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ETF PF01012.16 gi|156937171|ref|YP_001434967.1| - 0.068 12.8 1.2 0.3 10.7 0.2 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein domain DUF4426 PF14467.1 gi|156937171|ref|YP_001434967.1| - 0.15 11.8 0.1 0.57 9.9 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4426) DUF35 PF01796.12 gi|156937172|ref|YP_001434968.1| - 3.9e-11 42.9 0.1 5.7e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|156937172|ref|YP_001434968.1| - 0.00041 20.1 6.0 0.00074 19.3 4.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|156937172|ref|YP_001434968.1| - 0.0022 17.4 1.7 0.004 16.5 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156937172|ref|YP_001434968.1| - 0.0031 16.6 1.3 0.0049 16.0 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|156937172|ref|YP_001434968.1| - 0.0055 16.4 0.6 0.0094 15.7 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|156937172|ref|YP_001434968.1| - 0.013 15.3 0.6 0.022 14.5 0.4 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|156937172|ref|YP_001434968.1| - 0.015 15.0 1.0 0.023 14.3 0.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|156937172|ref|YP_001434968.1| - 0.056 12.6 1.0 9.2 5.5 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|156937172|ref|YP_001434968.1| - 0.058 12.9 4.6 1.6 8.2 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-Mss51 PF13824.1 gi|156937172|ref|YP_001434968.1| - 0.07 12.9 1.2 0.2 11.5 0.6 1.8 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Auto_anti-p27 PF06677.7 gi|156937172|ref|YP_001434968.1| - 0.12 12.1 0.5 3.1 7.6 0.1 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RecR PF02132.10 gi|156937172|ref|YP_001434968.1| - 0.13 11.7 4.3 0.62 9.5 0.2 2.6 1 1 1 2 2 2 0 RecR protein Methyltransf_13 PF08421.6 gi|156937172|ref|YP_001434968.1| - 0.16 11.4 2.7 1.8 8.1 0.2 2.3 1 1 1 2 2 2 0 Putative zinc binding domain zinc_ribbon_5 PF13719.1 gi|156937172|ref|YP_001434968.1| - 0.91 9.1 4.1 4.2 7.0 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|156937172|ref|YP_001434968.1| - 1.3 8.9 6.0 28 4.7 4.1 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|156937172|ref|YP_001434968.1| - 1.4 8.6 4.3 5.7 6.7 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|156937172|ref|YP_001434968.1| - 1.9 8.2 7.2 6.7 6.4 0.5 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|156937172|ref|YP_001434968.1| - 4.7 7.0 8.0 3 7.7 0.6 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|156937172|ref|YP_001434968.1| - 7.5 6.3 8.3 30 4.4 5.8 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 AMP-binding PF00501.23 gi|156937173|ref|YP_001434969.1| - 7.8e-81 271.5 0.0 9.2e-81 271.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|156937173|ref|YP_001434969.1| - 2.4e-06 28.3 2.9 5.1e-06 27.3 0.5 2.6 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Ub-Mut7C PF14451.1 gi|156937173|ref|YP_001434969.1| - 0.049 13.1 0.9 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 Mut7-C ubiquitin EamA PF00892.15 gi|156937175|ref|YP_001434971.1| - 2.3e-33 114.9 34.3 4.6e-20 71.9 7.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|156937175|ref|YP_001434971.1| - 2.5e-08 34.1 30.5 0.00012 22.2 8.3 3.3 1 1 0 2 2 2 2 Multidrug resistance efflux transporter DUF424 PF04242.8 gi|156937176|ref|YP_001434972.1| - 2.5e-24 85.1 0.2 2.8e-24 84.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) 2-Hacid_dh_C PF02826.14 gi|156937177|ref|YP_001434973.1| - 1.5e-60 203.3 0.0 2.4e-60 202.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|156937177|ref|YP_001434973.1| - 1.2e-35 121.9 0.0 2e-35 121.1 0.0 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|156937177|ref|YP_001434973.1| - 1.6e-09 37.8 1.6 2.5e-09 37.1 0.1 2.0 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|156937177|ref|YP_001434973.1| - 2.4e-07 30.7 0.3 7.6e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|156937177|ref|YP_001434973.1| - 5.2e-07 29.1 2.2 1.1e-05 24.8 0.1 2.9 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|156937177|ref|YP_001434973.1| - 1.1e-05 25.7 1.8 3.4e-05 24.1 0.1 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|156937177|ref|YP_001434973.1| - 0.0003 20.7 2.5 0.099 12.6 0.0 2.8 3 0 0 3 3 2 2 TrkA-N domain GFO_IDH_MocA PF01408.17 gi|156937177|ref|YP_001434973.1| - 0.0017 18.8 0.1 0.014 15.8 0.0 2.4 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|156937177|ref|YP_001434973.1| - 0.0034 17.3 2.2 0.0098 15.8 0.5 2.4 2 2 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.16 gi|156937177|ref|YP_001434973.1| - 0.0058 16.2 0.3 0.014 15.0 0.2 1.6 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Pyr_redox PF00070.22 gi|156937177|ref|YP_001434973.1| - 0.012 16.0 1.4 0.27 11.6 0.1 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Gp_dh_N PF00044.19 gi|156937177|ref|YP_001434973.1| - 0.016 15.1 0.1 0.032 14.1 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|156937177|ref|YP_001434973.1| - 0.031 13.9 2.6 0.038 13.6 0.4 2.2 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|156937177|ref|YP_001434973.1| - 0.063 13.4 0.7 0.82 9.8 0.0 2.5 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Shikimate_DH PF01488.15 gi|156937177|ref|YP_001434973.1| - 0.067 13.2 1.4 0.32 11.1 0.3 2.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Nitro_FeMo-Co PF02579.12 gi|156937177|ref|YP_001434973.1| - 0.094 12.8 1.8 15 5.7 0.0 3.5 2 1 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor Histidinol_dh PF00815.15 gi|156937178|ref|YP_001434974.1| - 2.5e-78 263.5 0.4 4e-78 262.8 0.3 1.3 1 1 0 1 1 1 1 Histidinol dehydrogenase ATP-grasp_5 PF13549.1 gi|156937179|ref|YP_001434975.1| - 1.5e-20 73.3 0.2 3.6e-20 72.1 0.1 1.7 1 1 0 1 1 1 1 ATP-grasp domain Nucleoporin2 PF04096.9 gi|156937179|ref|YP_001434975.1| - 0.12 12.1 0.0 15 5.4 0.0 2.2 2 0 0 2 2 2 0 Nucleoporin autopeptidase TRCF PF03461.10 gi|156937179|ref|YP_001434975.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 TRCF domain Succ_CoA_lig PF13607.1 gi|156937180|ref|YP_001434976.1| - 2.2e-28 98.6 0.1 5.7e-28 97.2 0.0 1.7 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|156937180|ref|YP_001434976.1| - 7.8e-27 93.7 0.3 4.5e-26 91.2 0.2 2.1 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|156937180|ref|YP_001434976.1| - 1.8e-16 60.4 0.0 1.1e-15 57.8 0.1 2.1 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.18 gi|156937180|ref|YP_001434976.1| - 0.0092 15.7 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GFO_IDH_MocA PF01408.17 gi|156937180|ref|YP_001434976.1| - 0.06 13.8 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_3 PF13377.1 gi|156937180|ref|YP_001434976.1| - 0.11 12.5 0.0 1.2 9.0 0.0 2.5 3 0 0 3 3 3 0 Periplasmic binding protein-like domain Ribosomal_L13e PF01294.13 gi|156937181|ref|YP_001434977.1| - 4.1e-10 39.4 0.1 4.7e-10 39.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L13e Flavoprotein PF02441.14 gi|156937182|ref|YP_001434978.1| - 1.8e-24 85.8 0.0 2.4e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein MFS_1 PF07690.11 gi|156937185|ref|YP_001434981.1| - 5.4e-35 120.7 54.1 3.8e-25 88.3 19.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Pantoate_transf PF02548.10 gi|156937186|ref|YP_001434982.1| - 7.2e-117 389.1 0.9 8.1e-117 388.9 0.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|156937186|ref|YP_001434982.1| - 2.1e-11 43.4 1.9 1.2e-10 41.0 1.3 1.9 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Peptidase_C39_2 PF13529.1 gi|156937186|ref|YP_001434982.1| - 0.084 13.2 0.0 0.19 12.0 0.0 1.6 2 0 0 2 2 2 0 Peptidase_C39 like family RtcB PF01139.12 gi|156937187|ref|YP_001434983.1| - 2.2e-156 521.0 0.0 2.5e-156 520.9 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Na_H_Exchanger PF00999.16 gi|156937188|ref|YP_001434984.1| - 3.2e-20 72.0 33.5 4.3e-20 71.5 23.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.23 gi|156937188|ref|YP_001434984.1| - 0.005 16.6 0.0 0.016 14.9 0.0 1.8 1 0 0 1 1 1 1 CBS domain DJ-1_PfpI PF01965.19 gi|156937189|ref|YP_001434985.1| - 5.7e-32 110.2 0.0 6.8e-32 109.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|156937189|ref|YP_001434985.1| - 4.8e-11 42.2 0.0 6e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|156937189|ref|YP_001434985.1| - 0.00015 21.2 0.0 0.00016 21.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|156937189|ref|YP_001434985.1| - 0.0031 17.1 0.0 0.0049 16.4 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain HupF_HypC PF01455.13 gi|156937189|ref|YP_001434985.1| - 0.045 13.7 0.4 13 5.9 0.1 2.3 1 1 0 2 2 2 0 HupF/HypC family tRNA-Thr_ED PF08915.6 gi|156937190|ref|YP_001434986.1| - 1.5e-47 161.0 0.0 1.6e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase RNA_pol_L_2 PF13656.1 gi|156937190|ref|YP_001434986.1| - 0.07 12.5 0.0 2.3 7.7 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Radical_SAM PF04055.16 gi|156937191|ref|YP_001434987.1| - 3e-13 50.2 0.1 1.1e-12 48.4 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|156937191|ref|YP_001434987.1| - 8.9e-08 32.3 0.0 2.2e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|156937191|ref|YP_001434987.1| - 0.022 14.8 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Dioxygenase_N PF04444.9 gi|156937191|ref|YP_001434987.1| - 0.14 12.2 0.0 0.42 10.6 0.0 1.8 2 0 0 2 2 2 0 Catechol dioxygenase N terminus Amidohydro_4 PF13147.1 gi|156937192|ref|YP_001434988.1| - 9.1e-12 45.5 0.0 2.5e-11 44.1 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|156937192|ref|YP_001434988.1| - 4e-08 33.2 0.4 3.1e-06 27.0 0.0 2.2 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.6 gi|156937192|ref|YP_001434988.1| - 0.00083 18.6 0.2 0.059 12.5 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family Hexapep PF00132.19 gi|156937193|ref|YP_001434989.1| - 9.3e-06 24.9 0.5 0.0035 16.7 0.0 2.7 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Lyase_1 PF00206.15 gi|156937194|ref|YP_001434990.1| - 4.1e-47 160.8 0.0 7.8e-47 159.9 0.0 1.4 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|156937194|ref|YP_001434990.1| - 6.9e-15 54.8 0.2 6.9e-15 54.8 0.2 3.3 4 1 1 5 5 5 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.6 gi|156937194|ref|YP_001434990.1| - 0.00026 20.8 2.4 0.00071 19.3 0.0 2.8 3 1 1 4 4 4 1 Adenylosuccinate lyase C-terminal Glycos_trans_3N PF02885.12 gi|156937194|ref|YP_001434990.1| - 0.014 14.9 0.5 0.23 11.0 0.0 3.3 3 1 0 3 3 3 0 Glycosyl transferase family, helical bundle domain ASL_C2 PF14698.1 gi|156937194|ref|YP_001434990.1| - 0.051 13.6 0.5 2.9 8.0 0.0 2.8 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal CutA1 PF03091.10 gi|156937195|ref|YP_001434991.1| - 2.5e-31 107.3 0.5 2.7e-31 107.2 0.4 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Peptidase_A17 PF05380.8 gi|156937195|ref|YP_001434991.1| - 0.0015 18.4 0.0 0.0019 18.1 0.0 1.1 1 0 0 1 1 1 1 Pao retrotransposon peptidase SPOR PF05036.8 gi|156937195|ref|YP_001434991.1| - 0.11 12.6 0.0 0.35 11.0 0.0 1.8 1 1 0 1 1 1 0 Sporulation related domain Glu-tRNAGln PF02686.10 gi|156937196|ref|YP_001434992.1| - 3.3e-11 42.8 0.4 4.1e-11 42.5 0.3 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit TerB-C PF15615.1 gi|156937196|ref|YP_001434992.1| - 0.078 13.2 0.1 0.083 13.1 0.1 1.1 1 0 0 1 1 1 0 TerB-C domain ATP_transf PF09830.4 gi|156937196|ref|YP_001434992.1| - 0.13 12.0 0.0 0.59 9.9 0.0 1.9 2 0 0 2 2 2 0 ATP adenylyltransferase NurA PF09376.5 gi|156937197|ref|YP_001434993.1| - 1.2e-06 28.2 0.0 2.4e-06 27.2 0.0 1.6 2 0 0 2 2 2 1 NurA domain Pho88 PF10032.4 gi|156937198|ref|YP_001434994.1| - 0.2 10.8 1.3 0.22 10.6 0.9 1.2 1 0 0 1 1 1 0 Phosphate transport (Pho88) SecE PF00584.15 gi|156937198|ref|YP_001434994.1| - 0.82 9.2 4.0 1.3 8.6 2.8 1.4 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex DUF1108 PF06531.6 gi|156937199|ref|YP_001434995.1| - 0.078 13.1 0.3 0.39 10.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1108) Aminotran_1_2 PF00155.16 gi|156937200|ref|YP_001434996.1| - 4.1e-44 151.0 0.0 5e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|156937200|ref|YP_001434996.1| - 0.0061 15.2 0.0 0.0097 14.6 0.0 1.2 1 0 0 1 1 1 1 Allinase ApbA_C PF08546.6 gi|156937200|ref|YP_001434996.1| - 0.059 13.3 0.0 1.1 9.3 0.0 2.2 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal Cys_Met_Meta_PP PF01053.15 gi|156937200|ref|YP_001434996.1| - 0.071 11.3 0.0 0.11 10.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GATase_2 PF00310.16 gi|156937201|ref|YP_001434997.1| - 2.2e-24 85.8 0.0 1.3e-15 57.0 0.0 3.4 1 1 2 3 3 3 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|156937201|ref|YP_001434997.1| - 3.5e-22 78.4 0.0 5.1e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|156937201|ref|YP_001434997.1| - 1.5e-21 76.7 0.0 3.2e-21 75.6 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|156937201|ref|YP_001434997.1| - 9.5e-07 27.7 0.0 1.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.12 gi|156937202|ref|YP_001434998.1| - 4.6e-116 387.7 1.5 6.7e-116 387.2 1.0 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase GXGXG PF01493.14 gi|156937202|ref|YP_001434998.1| - 6.5e-35 119.9 9.8 1.2e-34 119.1 6.8 1.4 1 0 0 1 1 1 1 GXGXG motif FMN_dh PF01070.13 gi|156937202|ref|YP_001434998.1| - 1.2e-12 47.4 8.4 5.7e-11 41.8 4.1 2.6 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4 PF00037.22 gi|156937202|ref|YP_001434998.1| - 1.6e-11 43.2 28.4 1.1e-06 28.0 3.3 3.7 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156937202|ref|YP_001434998.1| - 2e-10 40.8 20.9 6.9e-09 35.9 9.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156937202|ref|YP_001434998.1| - 8.4e-10 38.7 22.9 2.6e-08 34.0 9.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156937202|ref|YP_001434998.1| - 5.4e-09 35.7 16.7 3.6e-08 33.0 6.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156937202|ref|YP_001434998.1| - 7.4e-09 35.3 10.1 7.4e-09 35.3 7.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937202|ref|YP_001434998.1| - 1.1e-08 34.5 28.9 7.6e-07 28.7 2.5 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156937202|ref|YP_001434998.1| - 7.3e-08 32.6 10.3 0.0047 17.2 0.0 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156937202|ref|YP_001434998.1| - 2.2e-07 30.7 16.9 7.6e-06 25.8 6.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156937202|ref|YP_001434998.1| - 6.2e-07 30.0 13.2 0.0048 17.6 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|156937202|ref|YP_001434998.1| - 1.4e-06 27.8 25.0 0.00012 21.7 1.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain NMO PF03060.10 gi|156937202|ref|YP_001434998.1| - 1.6e-05 24.2 3.0 1.6e-05 24.2 2.0 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_4 PF12800.2 gi|156937202|ref|YP_001434998.1| - 2.6e-05 24.1 23.6 0.0056 16.9 1.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|156937202|ref|YP_001434998.1| - 5.2e-05 23.5 19.0 0.038 14.4 1.8 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain IMPDH PF00478.20 gi|156937202|ref|YP_001434998.1| - 0.00016 20.7 4.9 0.00039 19.4 3.4 1.6 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|156937202|ref|YP_001434998.1| - 0.00028 20.2 0.1 0.00063 19.0 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|156937202|ref|YP_001434998.1| - 0.0034 16.6 0.4 0.0034 16.6 0.2 2.3 2 1 0 2 2 2 1 PcrB family ThiG PF05690.9 gi|156937202|ref|YP_001434998.1| - 0.004 16.2 5.2 0.005 15.9 0.6 2.2 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG DeoC PF01791.4 gi|156937202|ref|YP_001434998.1| - 0.0075 15.5 1.7 0.02 14.2 1.2 1.7 1 0 0 1 1 1 1 DeoC/LacD family aldolase Fer4_3 PF12798.2 gi|156937202|ref|YP_001434998.1| - 0.019 15.4 5.4 0.019 15.4 3.7 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Trp_syntA PF00290.15 gi|156937202|ref|YP_001434998.1| - 0.082 11.4 0.2 0.16 10.4 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|156937202|ref|YP_001434998.1| - 0.45 9.5 2.6 17 4.4 0.1 2.6 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Fer4_15 PF13459.1 gi|156937202|ref|YP_001434998.1| - 4.1 8.0 22.3 0.12 13.0 1.6 3.1 2 1 1 3 3 2 0 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|156937203|ref|YP_001434999.1| - 1.1e-06 27.6 31.5 3.1e-05 22.8 21.9 2.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Lactamase_B PF00753.22 gi|156937204|ref|YP_001435000.1| - 4.6e-23 81.8 0.7 7.1e-23 81.2 0.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|156937204|ref|YP_001435000.1| - 1.3e-05 24.8 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|156937204|ref|YP_001435000.1| - 0.0062 16.2 0.0 0.012 15.3 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF1498 PF07385.7 gi|156937205|ref|YP_001435001.1| - 0.071 12.2 0.1 0.18 10.9 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1498) ThiI PF02568.9 gi|156937206|ref|YP_001435002.1| - 5.3e-12 45.6 0.0 8.6e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) HypD PF01924.11 gi|156937207|ref|YP_001435003.1| - 1.1e-126 422.3 0.0 1.3e-126 422.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|156937207|ref|YP_001435003.1| - 0.062 13.0 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 zf-RING of BARD1-type protein Integrase_Zn PF02022.14 gi|156937207|ref|YP_001435003.1| - 0.093 12.1 0.2 0.81 9.1 0.0 2.4 2 0 0 2 2 2 0 Integrase Zinc binding domain NMD3 PF04981.8 gi|156937208|ref|YP_001435004.1| - 7.5e-46 156.1 0.0 9.2e-46 155.8 0.0 1.1 1 0 0 1 1 1 1 NMD3 family zf-Di19 PF05605.7 gi|156937208|ref|YP_001435004.1| - 0.022 14.8 0.2 0.54 10.4 0.0 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|156937208|ref|YP_001435004.1| - 0.15 11.8 3.9 1 9.1 1.1 2.8 2 1 0 2 2 2 0 Double zinc ribbon FYVE PF01363.16 gi|156937208|ref|YP_001435004.1| - 1.4 8.8 4.1 0.67 9.8 1.1 1.7 2 0 0 2 2 2 0 FYVE zinc finger GPI PF06560.6 gi|156937209|ref|YP_001435005.1| - 1.2e-28 99.4 0.0 1.5e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_1 PF00190.17 gi|156937209|ref|YP_001435005.1| - 1.4e-07 31.0 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.6 gi|156937209|ref|YP_001435005.1| - 9.2e-07 28.2 0.1 2.2e-06 27.0 0.1 1.6 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|156937209|ref|YP_001435005.1| - 9.5e-07 28.6 0.0 1.3e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Cupin ARD PF03079.9 gi|156937209|ref|YP_001435005.1| - 7.2e-06 26.0 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 ARD/ARD' family AraC_binding PF02311.14 gi|156937209|ref|YP_001435005.1| - 0.034 13.8 0.1 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|156937209|ref|YP_001435005.1| - 0.045 13.1 0.0 0.099 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) UbiA PF01040.13 gi|156937210|ref|YP_001435006.1| - 1.9e-39 135.4 17.7 2.5e-39 135.0 12.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Got1 PF04178.7 gi|156937210|ref|YP_001435006.1| - 0.016 15.2 1.7 0.016 15.2 1.2 2.3 3 0 0 3 3 3 0 Got1/Sft2-like family Chorion_2 PF03964.10 gi|156937210|ref|YP_001435006.1| - 0.056 14.0 0.8 0.056 14.0 0.6 1.9 2 0 0 2 2 2 0 Chorion family 2 DUF1269 PF06897.7 gi|156937210|ref|YP_001435006.1| - 0.41 10.7 7.7 1.1 9.2 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Alba PF01918.16 gi|156937211|ref|YP_001435007.1| - 9.7e-11 41.1 1.0 1.2e-10 40.8 0.7 1.1 1 0 0 1 1 1 1 Alba Topoisom_bac PF01131.15 gi|156937212|ref|YP_001435008.1| - 2e-81 273.8 0.0 2.9e-81 273.3 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|156937212|ref|YP_001435008.1| - 1.3e-19 70.0 0.0 4.8e-19 68.1 0.0 2.0 2 0 0 2 2 1 1 Toprim domain DEAD PF00270.24 gi|156937212|ref|YP_001435008.1| - 1.1e-09 38.0 0.0 8.3e-09 35.1 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|156937212|ref|YP_001435008.1| - 7.9e-06 25.8 0.0 1.7e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|156937212|ref|YP_001435008.1| - 1.1e-05 25.1 0.0 3.4e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|156937212|ref|YP_001435008.1| - 3.1e-05 23.6 0.0 6.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Toprim_4 PF13662.1 gi|156937212|ref|YP_001435008.1| - 0.0016 18.4 1.9 0.01 15.8 0.0 3.1 3 0 0 3 3 3 1 Toprim domain MobB PF03205.9 gi|156937212|ref|YP_001435008.1| - 0.0044 16.7 0.0 0.02 14.5 0.0 2.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|156937212|ref|YP_001435008.1| - 0.0047 16.3 0.0 0.015 14.7 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|156937212|ref|YP_001435008.1| - 0.0075 15.6 0.0 0.022 14.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|156937212|ref|YP_001435008.1| - 0.019 15.3 0.0 0.1 12.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|156937212|ref|YP_001435008.1| - 0.028 14.1 0.0 0.085 12.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) CbiA PF01656.18 gi|156937212|ref|YP_001435008.1| - 0.03 13.7 0.0 0.096 12.0 0.0 1.9 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|156937212|ref|YP_001435008.1| - 0.039 14.0 0.0 0.18 11.9 0.0 2.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|156937212|ref|YP_001435008.1| - 0.042 14.1 0.0 0.1 12.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Hairy_orange PF07527.8 gi|156937212|ref|YP_001435008.1| - 0.061 13.0 0.0 2.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Hairy Orange Helicase_RecD PF05127.9 gi|156937212|ref|YP_001435008.1| - 0.063 12.9 0.0 0.75 9.4 0.0 2.3 2 0 0 2 2 2 0 Helicase AAA_29 PF13555.1 gi|156937212|ref|YP_001435008.1| - 0.067 12.7 0.1 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|156937212|ref|YP_001435008.1| - 0.098 12.0 0.0 0.3 10.4 0.0 1.8 2 0 0 2 2 1 0 AAA-like domain T2SE PF00437.15 gi|156937212|ref|YP_001435008.1| - 0.12 11.2 0.0 0.25 10.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Borrelia_orfA PF02414.10 gi|156937212|ref|YP_001435008.1| - 0.3 10.1 0.0 0.6 9.1 0.0 1.4 1 0 0 1 1 1 0 Borrelia ORF-A DZR PF12773.2 gi|156937212|ref|YP_001435008.1| - 0.42 10.4 4.7 2.6 7.9 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|156937212|ref|YP_001435008.1| - 6.7 6.7 6.0 12 5.9 0.2 2.8 2 0 0 2 2 2 0 Zinc ribbon domain PQQ_2 PF13360.1 gi|156937213|ref|YP_001435009.1| - 7.6e-05 22.2 0.1 0.021 14.2 0.1 3.0 2 1 0 2 2 2 1 PQQ-like domain Coatomer_WDAD PF04053.9 gi|156937213|ref|YP_001435009.1| - 0.00014 20.7 0.1 0.09 11.5 0.0 2.7 1 1 1 3 3 3 2 Coatomer WD associated region PQQ_3 PF13570.1 gi|156937213|ref|YP_001435009.1| - 0.00018 21.6 0.1 1.4 9.2 0.0 3.6 3 0 0 3 3 3 1 PQQ-like domain eIF2A PF08662.6 gi|156937213|ref|YP_001435009.1| - 0.0098 15.6 0.1 0.083 12.5 0.0 2.4 1 1 0 2 2 2 1 Eukaryotic translation initiation factor eIF2A PQQ PF01011.16 gi|156937213|ref|YP_001435009.1| - 0.028 13.9 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 0 PQQ enzyme repeat Lgl_C PF08596.5 gi|156937213|ref|YP_001435009.1| - 0.11 10.9 0.0 0.24 9.7 0.0 1.5 1 0 0 1 1 1 0 Lethal giant larvae(Lgl) like, C-terminal CPG4 PF15481.1 gi|156937213|ref|YP_001435009.1| - 0.15 12.3 0.9 1.8 8.9 0.2 2.4 2 0 0 2 2 2 0 Chondroitin proteoglycan 4 CCG PF02754.11 gi|156937214|ref|YP_001435010.1| - 2.1e-24 85.3 5.9 1.4e-11 44.1 0.9 2.3 2 0 0 2 2 2 2 Cysteine-rich domain DHBP_synthase PF00926.14 gi|156937215|ref|YP_001435011.1| - 1.2e-52 178.0 0.0 1.3e-52 177.8 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DUF4187 PF13821.1 gi|156937216|ref|YP_001435012.1| - 0.046 13.3 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) eRF1_2 PF03464.10 gi|156937216|ref|YP_001435012.1| - 0.12 12.6 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 eRF1 domain 2 NTP_transf_2 PF01909.18 gi|156937217|ref|YP_001435013.1| - 4.2e-09 36.6 0.0 9.8e-09 35.4 0.0 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|156937217|ref|YP_001435013.1| - 0.073 12.6 0.0 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF4269 PF14091.1 gi|156937217|ref|YP_001435013.1| - 0.076 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4269) HTH_AsnC-type PF13404.1 gi|156937217|ref|YP_001435013.1| - 0.12 11.9 0.1 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|156937217|ref|YP_001435013.1| - 0.14 11.5 0.1 0.28 10.6 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AIRS PF00586.19 gi|156937218|ref|YP_001435014.1| - 1.6e-08 34.6 2.4 2.2e-08 34.1 0.7 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|156937218|ref|YP_001435014.1| - 0.0035 17.3 0.0 0.0091 16.0 0.0 1.8 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain PcrB PF01884.12 gi|156937219|ref|YP_001435015.1| - 1.2e-57 194.8 0.1 1.4e-57 194.6 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|156937219|ref|YP_001435015.1| - 8.1e-07 28.5 0.1 1.5e-06 27.6 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|156937219|ref|YP_001435015.1| - 0.00029 19.8 0.2 0.00053 19.0 0.1 1.4 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|156937219|ref|YP_001435015.1| - 0.00046 18.8 0.1 0.0014 17.2 0.1 1.7 2 0 0 2 2 2 1 Tryptophan synthase alpha chain BtpA PF03437.10 gi|156937219|ref|YP_001435015.1| - 0.0033 16.7 0.3 0.007 15.6 0.1 1.5 2 0 0 2 2 2 1 BtpA family DHO_dh PF01180.16 gi|156937219|ref|YP_001435015.1| - 0.0046 15.9 0.1 0.007 15.3 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|156937219|ref|YP_001435015.1| - 0.0052 15.9 0.6 0.011 14.8 0.4 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase ETF PF01012.16 gi|156937219|ref|YP_001435015.1| - 0.011 15.4 0.6 0.019 14.6 0.4 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Ribul_P_3_epim PF00834.14 gi|156937219|ref|YP_001435015.1| - 0.035 13.2 0.3 0.066 12.3 0.1 1.5 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family MoCF_biosynth PF00994.19 gi|156937219|ref|YP_001435015.1| - 0.05 12.9 0.5 0.6 9.5 0.0 2.4 2 1 0 2 2 2 0 Probable molybdopterin binding domain B12-binding PF02310.14 gi|156937219|ref|YP_001435015.1| - 0.084 12.7 0.9 0.31 10.9 0.1 2.3 3 0 0 3 3 3 0 B12 binding domain Elf1 PF05129.8 gi|156937220|ref|YP_001435016.1| - 1.2e-08 34.5 0.1 1.4e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|156937220|ref|YP_001435016.1| - 2.2e-05 23.6 0.4 5.7e-05 22.3 0.3 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|156937220|ref|YP_001435016.1| - 0.00017 21.7 0.1 0.00021 21.5 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|156937220|ref|YP_001435016.1| - 0.0032 16.6 0.5 0.11 11.7 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|156937220|ref|YP_001435016.1| - 0.0033 16.8 0.0 0.0041 16.5 0.0 1.1 1 0 0 1 1 1 1 DNA Polymerase alpha zinc finger DNA_RNApol_7kD PF03604.8 gi|156937220|ref|YP_001435016.1| - 0.0036 16.7 1.1 0.26 10.7 0.1 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|156937220|ref|YP_001435016.1| - 0.01 15.4 0.8 0.019 14.5 0.6 1.5 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DUF1610 PF07754.6 gi|156937220|ref|YP_001435016.1| - 0.011 15.7 0.7 0.011 15.7 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF164 PF02591.10 gi|156937220|ref|YP_001435016.1| - 0.013 15.3 1.4 3.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain UPF0547 PF10571.4 gi|156937220|ref|YP_001435016.1| - 0.014 15.0 4.8 0.083 12.6 3.3 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|156937220|ref|YP_001435016.1| - 0.019 14.8 0.3 0.028 14.3 0.2 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|156937220|ref|YP_001435016.1| - 0.028 13.8 2.1 0.23 10.9 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|156937220|ref|YP_001435016.1| - 0.052 13.4 0.5 1.1 9.2 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-ISL3 PF14690.1 gi|156937220|ref|YP_001435016.1| - 0.059 13.4 0.2 0.65 10.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNHCP PF12647.2 gi|156937220|ref|YP_001435016.1| - 0.061 13.1 2.3 0.15 11.9 0.4 1.9 1 1 1 2 2 2 0 RNHCP domain Prok-RING_1 PF14446.1 gi|156937220|ref|YP_001435016.1| - 0.061 13.0 1.8 3.3 7.5 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|156937220|ref|YP_001435016.1| - 0.065 12.8 5.0 0.73 9.4 3.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156937220|ref|YP_001435016.1| - 0.068 12.8 1.8 2.4 7.8 1.2 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|156937220|ref|YP_001435016.1| - 0.069 12.8 4.9 0.78 9.4 3.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|156937220|ref|YP_001435016.1| - 0.087 12.7 0.8 4.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-CSL PF05207.8 gi|156937220|ref|YP_001435016.1| - 0.089 12.3 0.9 0.36 10.3 0.6 1.9 1 1 0 1 1 1 0 CSL zinc finger DUF35_N PF12172.3 gi|156937220|ref|YP_001435016.1| - 0.09 12.7 1.1 8.1 6.4 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.1 gi|156937220|ref|YP_001435016.1| - 0.092 12.6 0.3 9.6 6.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-like PF04071.7 gi|156937220|ref|YP_001435016.1| - 0.11 12.1 0.4 0.17 11.6 0.3 1.4 1 1 0 1 1 1 0 Cysteine-rich small domain Terminase_GpA PF05876.7 gi|156937220|ref|YP_001435016.1| - 0.14 10.5 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) RecR PF02132.10 gi|156937220|ref|YP_001435016.1| - 0.15 11.5 0.4 5.5 6.4 0.0 2.1 2 0 0 2 2 2 0 RecR protein zf-NADH-PPase PF09297.6 gi|156937220|ref|YP_001435016.1| - 0.16 11.5 3.4 3.3 7.2 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RRN7 PF11781.3 gi|156937220|ref|YP_001435016.1| - 0.16 11.4 0.6 17 5.0 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-tcix PF14952.1 gi|156937220|ref|YP_001435016.1| - 0.16 11.2 2.0 4.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF2296 PF10058.4 gi|156937220|ref|YP_001435016.1| - 0.19 11.4 1.2 4.9 6.9 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L44 PF00935.14 gi|156937220|ref|YP_001435016.1| - 0.22 11.5 2.8 0.23 11.4 0.3 1.9 1 1 1 2 2 2 0 Ribosomal protein L44 DZR PF12773.2 gi|156937220|ref|YP_001435016.1| - 0.24 11.2 2.2 0.48 10.2 1.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|156937220|ref|YP_001435016.1| - 0.3 10.4 1.7 2.2 7.6 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS1595 PF12760.2 gi|156937220|ref|YP_001435016.1| - 0.49 10.2 2.1 1.4 8.7 1.4 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|156937220|ref|YP_001435016.1| - 0.91 9.2 3.3 15 5.3 0.0 2.7 3 0 0 3 3 3 0 Nudix N-terminal zf-DNL PF05180.7 gi|156937220|ref|YP_001435016.1| - 0.97 9.1 4.2 4 7.2 0.2 2.1 1 1 1 2 2 2 0 DNL zinc finger Ogr_Delta PF04606.7 gi|156937220|ref|YP_001435016.1| - 3.1 7.5 4.8 14 5.4 3.3 2.0 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger SWIM PF04434.12 gi|156937221|ref|YP_001435017.1| - 0.00018 20.8 0.2 0.00033 20.0 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger Rib_5-P_isom_A PF06026.9 gi|156937222|ref|YP_001435018.1| - 5.1e-40 136.6 0.0 6.2e-40 136.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|156937222|ref|YP_001435018.1| - 0.00031 20.4 0.0 0.00055 19.6 0.0 1.6 1 0 0 1 1 1 1 DeoR C terminal sensor domain DIM PF08194.7 gi|156937223|ref|YP_001435019.1| - 0.032 14.1 1.9 0.032 14.1 1.3 2.1 2 0 0 2 2 2 0 DIM protein BTP PF05232.7 gi|156937223|ref|YP_001435019.1| - 0.85 9.4 4.5 1.2 8.8 3.1 1.2 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family Defensin_propep PF00879.13 gi|156937223|ref|YP_001435019.1| - 3.3 7.7 5.4 6.1 6.8 3.8 1.5 1 0 0 1 1 1 0 Defensin propeptide Hepar_II_III PF07940.8 gi|156937224|ref|YP_001435020.1| - 0.00041 20.2 0.1 0.00082 19.2 0.0 1.4 1 0 0 1 1 1 1 Heparinase II/III-like protein Trp_syntA PF00290.15 gi|156937225|ref|YP_001435021.1| - 3.6e-32 110.9 0.0 4.2e-32 110.6 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|156937225|ref|YP_001435021.1| - 2.5e-06 26.7 0.0 3.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|156937225|ref|YP_001435021.1| - 0.0011 18.3 0.1 0.0019 17.5 0.0 1.6 2 0 0 2 2 2 1 PcrB family TMP-TENI PF02581.12 gi|156937225|ref|YP_001435021.1| - 0.087 11.9 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI Lipase_GDSL_2 PF13472.1 gi|156937225|ref|YP_001435021.1| - 0.15 12.1 0.0 0.34 11.0 0.0 1.7 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family SRR PF07709.6 gi|156937225|ref|YP_001435021.1| - 2.5 8.6 9.6 7.3 7.2 1.8 3.0 3 0 0 3 3 3 0 Seven Residue Repeat Sigma_reg_C PF13791.1 gi|156937227|ref|YP_001435023.1| - 0.053 13.5 0.3 0.069 13.1 0.2 1.2 1 0 0 1 1 1 0 Sigma factor regulator C-terminal LVIVD PF08309.6 gi|156937228|ref|YP_001435024.1| - 0.00049 19.0 12.0 0.0012 17.8 0.2 3.7 4 0 0 4 4 4 2 LVIVD repeat CBM_5_12 PF02839.9 gi|156937228|ref|YP_001435024.1| - 0.0015 18.0 1.8 0.0015 18.0 1.3 2.2 2 0 0 2 2 2 1 Carbohydrate binding domain WD40 PF00400.27 gi|156937228|ref|YP_001435024.1| - 0.0044 16.8 0.1 0.96 9.4 0.0 3.4 4 0 0 4 4 4 1 WD domain, G-beta repeat PQQ_2 PF13360.1 gi|156937228|ref|YP_001435024.1| - 0.013 14.9 0.0 0.076 12.4 0.0 2.2 1 1 0 1 1 1 0 PQQ-like domain eIF2A PF08662.6 gi|156937228|ref|YP_001435024.1| - 0.027 14.2 0.2 0.085 12.5 0.0 1.9 2 0 0 2 2 2 0 Eukaryotic translation initiation factor eIF2A CHU_C PF13585.1 gi|156937228|ref|YP_001435024.1| - 0.15 11.9 0.2 0.15 11.9 0.1 2.2 2 0 0 2 2 2 0 C-terminal domain of CHU protein family PQQ_3 PF13570.1 gi|156937228|ref|YP_001435024.1| - 9.6 6.6 12.3 7.1 7.0 0.4 4.3 6 0 0 6 6 6 0 PQQ-like domain PQQ_2 PF13360.1 gi|156937229|ref|YP_001435025.1| - 0.00013 21.4 0.0 0.0053 16.2 0.0 2.5 1 1 1 2 2 2 1 PQQ-like domain PQQ_3 PF13570.1 gi|156937229|ref|YP_001435025.1| - 0.001 19.2 0.0 1.1 9.6 0.0 3.2 4 0 0 4 4 4 2 PQQ-like domain LVIVD PF08309.6 gi|156937229|ref|YP_001435025.1| - 0.021 13.8 0.1 0.12 11.3 0.0 2.0 2 0 0 2 2 2 0 LVIVD repeat CPSF_A PF03178.10 gi|156937229|ref|YP_001435025.1| - 0.19 10.7 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 CPSF A subunit region Pkinase PF00069.20 gi|156937230|ref|YP_001435026.1| - 8.6e-18 64.4 0.0 2.2e-17 63.0 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|156937230|ref|YP_001435026.1| - 2.1e-11 43.3 0.0 4.8e-11 42.2 0.0 1.5 2 0 0 2 2 2 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|156937230|ref|YP_001435026.1| - 6.1e-06 25.3 0.0 8e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Kinase-like Seadorna_VP7 PF07387.6 gi|156937230|ref|YP_001435026.1| - 0.011 14.6 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 0 Seadornavirus VP7 Phe_tRNA-synt_N PF02912.13 gi|156937230|ref|YP_001435026.1| - 0.11 12.1 1.3 0.18 11.5 0.2 1.7 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain Baculo_PEP_C PF04513.7 gi|156937231|ref|YP_001435027.1| - 1.9e-08 34.2 2.2 0.00013 21.8 1.3 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.13 gi|156937231|ref|YP_001435027.1| - 5.6e-06 26.0 12.6 2.2e-05 24.0 8.7 2.0 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain HSBP1 PF06825.7 gi|156937231|ref|YP_001435027.1| - 5.9e-06 25.7 25.9 0.045 13.3 5.0 4.5 1 1 3 4 4 4 3 Heat shock factor binding protein 1 AAA_13 PF13166.1 gi|156937231|ref|YP_001435027.1| - 2.6e-05 22.8 9.1 3.3e-05 22.5 6.3 1.0 1 0 0 1 1 1 1 AAA domain DUF4164 PF13747.1 gi|156937231|ref|YP_001435027.1| - 2.7e-05 24.1 18.9 0.0005 20.1 7.5 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4164) ApoLp-III PF07464.6 gi|156937231|ref|YP_001435027.1| - 6.4e-05 23.0 11.6 0.00013 22.0 7.3 2.1 2 1 0 2 2 1 1 Apolipophorin-III precursor (apoLp-III) DUF3584 PF12128.3 gi|156937231|ref|YP_001435027.1| - 0.00021 18.7 7.3 0.00029 18.3 5.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF1020 PF06255.8 gi|156937231|ref|YP_001435027.1| - 0.00023 20.5 1.8 0.0008 18.7 0.4 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1020) DUF883 PF05957.8 gi|156937231|ref|YP_001435027.1| - 0.00029 21.1 6.9 0.0047 17.2 1.9 2.5 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF883) Prominin PF05478.6 gi|156937231|ref|YP_001435027.1| - 0.00037 18.1 5.0 0.00048 17.8 3.5 1.1 1 0 0 1 1 1 1 Prominin DUF1664 PF07889.7 gi|156937231|ref|YP_001435027.1| - 0.00057 19.6 14.4 0.46 10.2 5.3 2.8 1 1 0 2 2 2 2 Protein of unknown function (DUF1664) Mer2 PF09074.5 gi|156937231|ref|YP_001435027.1| - 0.0007 19.5 15.6 0.0012 18.8 10.8 1.3 1 0 0 1 1 1 1 Mer2 RmuC PF02646.11 gi|156937231|ref|YP_001435027.1| - 0.0011 17.9 8.4 0.0028 16.5 2.5 2.2 1 1 1 2 2 2 1 RmuC family MtrG PF04210.8 gi|156937231|ref|YP_001435027.1| - 0.0022 17.6 17.8 0.56 9.9 0.6 4.6 1 1 3 4 4 4 1 Tetrahydromethanopterin S-methyltransferase, subunit G SlyX PF04102.7 gi|156937231|ref|YP_001435027.1| - 0.0022 18.3 12.7 0.012 15.9 1.5 3.9 1 1 3 4 4 4 1 SlyX NPV_P10 PF05531.7 gi|156937231|ref|YP_001435027.1| - 0.0022 18.1 7.9 0.46 10.7 0.3 3.3 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Phasin PF05597.6 gi|156937231|ref|YP_001435027.1| - 0.0024 17.6 11.1 0.0061 16.3 2.8 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Phage_GPO PF05929.6 gi|156937231|ref|YP_001435027.1| - 0.0025 17.1 4.0 0.0034 16.7 2.8 1.3 1 0 0 1 1 1 1 Phage capsid scaffolding protein (GPO) serine peptidase SF-assemblin PF06705.6 gi|156937231|ref|YP_001435027.1| - 0.0032 16.6 17.1 0.0045 16.1 11.8 1.2 1 0 0 1 1 1 1 SF-assemblin/beta giardin DUF342 PF03961.8 gi|156937231|ref|YP_001435027.1| - 0.0032 15.9 8.6 0.0032 15.9 5.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF342) HAUS-augmin3 PF14932.1 gi|156937231|ref|YP_001435027.1| - 0.005 16.0 12.4 0.0072 15.5 8.2 1.6 1 1 1 2 2 2 1 HAUS augmin-like complex subunit 3 Fzo_mitofusin PF04799.8 gi|156937231|ref|YP_001435027.1| - 0.0076 15.6 11.3 0.57 9.5 2.8 2.6 1 1 2 3 3 3 2 fzo-like conserved region Atg14 PF10186.4 gi|156937231|ref|YP_001435027.1| - 0.0082 15.1 14.7 0.023 13.6 10.6 1.5 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 AAA_32 PF13654.1 gi|156937231|ref|YP_001435027.1| - 0.0089 14.7 12.6 0.032 12.9 1.4 2.0 1 1 1 2 2 2 2 AAA domain MCPsignal PF00015.16 gi|156937231|ref|YP_001435027.1| - 0.011 15.3 2.1 0.019 14.5 1.4 1.5 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain COG5 PF10392.4 gi|156937231|ref|YP_001435027.1| - 0.011 15.6 9.0 0.37 10.7 6.1 2.3 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Syntaxin-6_N PF09177.6 gi|156937231|ref|YP_001435027.1| - 0.014 15.7 11.0 0.3 11.5 7.7 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Prefoldin_2 PF01920.15 gi|156937231|ref|YP_001435027.1| - 0.015 15.0 17.6 0.43 10.3 2.3 3.5 1 1 2 3 3 3 0 Prefoldin subunit LUC7 PF03194.10 gi|156937231|ref|YP_001435027.1| - 0.015 14.7 11.2 0.021 14.3 7.8 1.1 1 0 0 1 1 1 0 LUC7 N_terminus Tht1 PF04163.7 gi|156937231|ref|YP_001435027.1| - 0.018 13.4 4.9 0.02 13.3 3.4 1.3 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein DUF4455 PF14643.1 gi|156937231|ref|YP_001435027.1| - 0.019 13.6 11.9 0.032 12.8 8.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4455) HalX PF08663.5 gi|156937231|ref|YP_001435027.1| - 0.019 14.9 9.8 0.55 10.2 0.1 3.7 2 1 0 2 2 2 0 HalX domain DUF4407 PF14362.1 gi|156937231|ref|YP_001435027.1| - 0.021 13.7 6.4 0.016 14.1 3.3 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4407) DUF948 PF06103.6 gi|156937231|ref|YP_001435027.1| - 0.021 14.6 7.6 43 4.0 5.2 2.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF3810 PF12725.2 gi|156937231|ref|YP_001435027.1| - 0.023 13.5 1.0 0.061 12.2 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3810) HSCB_C PF07743.8 gi|156937231|ref|YP_001435027.1| - 0.025 15.0 18.7 0.6 10.6 1.3 3.6 2 1 2 4 4 3 0 HSCB C-terminal oligomerisation domain Rad50_zn_hook PF04423.9 gi|156937231|ref|YP_001435027.1| - 0.028 13.8 7.3 3.3 7.2 0.1 4.1 1 1 1 3 3 3 0 Rad50 zinc hook motif FliD_C PF07195.7 gi|156937231|ref|YP_001435027.1| - 0.028 13.7 9.6 5 6.3 0.2 2.9 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Prefoldin PF02996.12 gi|156937231|ref|YP_001435027.1| - 0.03 13.9 12.8 1.4 8.6 0.3 3.4 1 1 1 2 2 2 0 Prefoldin subunit IncA PF04156.9 gi|156937231|ref|YP_001435027.1| - 0.037 13.6 16.0 0.61 9.6 10.9 2.2 1 1 0 1 1 1 0 IncA protein Phage_Mu_Gam PF07352.7 gi|156937231|ref|YP_001435027.1| - 0.039 13.4 13.5 0.073 12.5 1.5 2.3 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein Exonuc_VII_L PF02601.10 gi|156937231|ref|YP_001435027.1| - 0.047 12.8 6.3 0.072 12.2 4.4 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit COG2 PF06148.6 gi|156937231|ref|YP_001435027.1| - 0.052 13.4 14.3 1.1 9.1 0.4 3.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Hemagglutinin PF00509.13 gi|156937231|ref|YP_001435027.1| - 0.052 11.6 11.4 0.12 10.4 4.6 2.1 1 1 1 2 2 2 0 Haemagglutinin Peripla_BP_2 PF01497.13 gi|156937231|ref|YP_001435027.1| - 0.075 12.1 6.1 14 4.7 2.4 3.4 1 1 1 2 2 2 0 Periplasmic binding protein Taxilin PF09728.4 gi|156937231|ref|YP_001435027.1| - 0.084 11.9 18.6 0.093 11.7 12.6 1.3 1 1 0 1 1 1 0 Myosin-like coiled-coil protein OmpH PF03938.9 gi|156937231|ref|YP_001435027.1| - 0.089 12.7 9.3 0.98 9.3 6.4 2.2 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Mnd1 PF03962.10 gi|156937231|ref|YP_001435027.1| - 0.093 12.3 14.0 0.22 11.1 9.7 1.7 1 1 0 1 1 1 0 Mnd1 family DUF4618 PF15397.1 gi|156937231|ref|YP_001435027.1| - 0.093 12.0 17.1 0.045 13.0 6.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Mating_N PF12731.2 gi|156937231|ref|YP_001435027.1| - 0.1 12.4 0.1 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 Mating-type protein beta 1 Reo_sigmaC PF04582.7 gi|156937231|ref|YP_001435027.1| - 0.11 11.6 1.0 0.42 9.7 0.6 1.7 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Occludin_ELL PF07303.8 gi|156937231|ref|YP_001435027.1| - 0.11 13.2 9.4 9.7 6.9 0.1 3.7 1 1 2 3 3 3 0 Occludin homology domain LXG PF04740.7 gi|156937231|ref|YP_001435027.1| - 0.12 12.1 8.5 0.28 10.9 5.9 1.7 1 1 0 1 1 1 0 LXG domain of WXG superfamily DUF4358 PF14270.1 gi|156937231|ref|YP_001435027.1| - 0.12 12.2 5.9 9.2 6.2 0.3 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4358) APG17 PF04108.7 gi|156937231|ref|YP_001435027.1| - 0.12 11.0 10.6 1.3 7.7 7.2 2.4 1 1 1 2 2 2 0 Autophagy protein Apg17 MerR-DNA-bind PF09278.6 gi|156937231|ref|YP_001435027.1| - 0.13 12.7 12.7 3.7 8.0 0.4 3.7 1 1 2 3 3 3 0 MerR, DNA binding DIT1_PvcA PF05141.7 gi|156937231|ref|YP_001435027.1| - 0.13 11.5 3.7 0.17 11.1 2.5 1.2 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein Mit_KHE1 PF10173.4 gi|156937231|ref|YP_001435027.1| - 0.13 12.0 4.4 2.3 8.0 0.3 2.1 1 1 1 2 2 2 0 Mitochondrial K+-H+ exchange-related V_ATPase_I PF01496.14 gi|156937231|ref|YP_001435027.1| - 0.13 10.0 12.2 0.059 11.2 3.2 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF4446 PF14584.1 gi|156937231|ref|YP_001435027.1| - 0.15 11.9 12.4 1.5 8.6 2.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) RRF_GI PF12614.3 gi|156937231|ref|YP_001435027.1| - 0.15 11.8 7.9 0.12 12.1 4.1 1.8 1 1 1 2 2 1 0 Ribosome recycling factor DASH_Spc19 PF08287.6 gi|156937231|ref|YP_001435027.1| - 0.16 11.5 14.6 0.048 13.2 4.4 2.4 1 1 1 2 2 2 0 Spc19 WXG100 PF06013.7 gi|156937231|ref|YP_001435027.1| - 0.17 11.8 2.5 8.2 6.5 0.3 3.3 2 1 2 4 4 3 0 Proteins of 100 residues with WXG YlqD PF11068.3 gi|156937231|ref|YP_001435027.1| - 0.18 11.8 11.9 0.52 10.3 4.3 2.3 1 1 1 2 2 2 0 YlqD protein Carbpep_Y_N PF05388.6 gi|156937231|ref|YP_001435027.1| - 0.19 11.9 4.8 0.5 10.5 2.0 2.6 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide DUF812 PF05667.6 gi|156937231|ref|YP_001435027.1| - 0.23 9.9 17.0 0.52 8.7 11.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Fib_alpha PF08702.5 gi|156937231|ref|YP_001435027.1| - 0.23 11.5 11.4 0.51 10.4 7.4 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4351 PF14261.1 gi|156937231|ref|YP_001435027.1| - 0.24 11.3 7.0 18 5.3 0.2 3.8 1 1 1 3 3 3 0 Domain of unknown function (DUF4351) Cluap1 PF10234.4 gi|156937231|ref|YP_001435027.1| - 0.24 10.5 15.8 0.11 11.6 6.3 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 Spectrin PF00435.16 gi|156937231|ref|YP_001435027.1| - 0.26 11.5 10.7 0.73 10.1 6.0 2.3 1 1 1 2 2 2 0 Spectrin repeat IFT57 PF10498.4 gi|156937231|ref|YP_001435027.1| - 0.26 9.9 15.2 0.29 9.8 4.8 1.9 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF489 PF04356.7 gi|156937231|ref|YP_001435027.1| - 0.27 10.8 4.0 0.42 10.1 2.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF489) HisKA_3 PF07730.8 gi|156937231|ref|YP_001435027.1| - 0.27 11.5 6.2 9.8 6.6 0.2 3.5 1 1 2 3 3 3 0 Histidine kinase CR6_interact PF10147.4 gi|156937231|ref|YP_001435027.1| - 0.29 10.4 15.8 0.64 9.3 6.9 2.3 1 1 1 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 DUF310 PF03750.8 gi|156937231|ref|YP_001435027.1| - 0.3 11.2 7.8 0.48 10.6 4.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF310) DUF3840 PF12944.2 gi|156937231|ref|YP_001435027.1| - 0.31 10.9 4.5 0.21 11.4 1.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3840) ISG65-75 PF11727.3 gi|156937231|ref|YP_001435027.1| - 0.32 10.0 12.8 1.8 7.5 5.0 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein ORF6C PF10552.4 gi|156937231|ref|YP_001435027.1| - 0.33 10.6 14.6 1.6 8.4 0.3 4.2 1 1 4 5 5 3 0 ORF6C domain P4Ha_N PF08336.6 gi|156937231|ref|YP_001435027.1| - 0.34 10.7 10.8 1.8 8.3 3.4 2.2 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region TnpV PF14198.1 gi|156937231|ref|YP_001435027.1| - 0.36 10.7 10.8 0.88 9.4 1.1 3.2 1 1 2 3 3 3 0 Transposon-encoded protein TnpV DREPP PF05558.7 gi|156937231|ref|YP_001435027.1| - 0.38 10.5 5.2 1.2 8.8 2.8 2.1 1 1 1 2 2 2 0 DREPP plasma membrane polypeptide DUF1311 PF07007.7 gi|156937231|ref|YP_001435027.1| - 0.39 10.8 3.9 14 5.8 0.3 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1311) HrcA PF01628.16 gi|156937231|ref|YP_001435027.1| - 0.4 10.2 9.1 0.67 9.5 3.8 2.1 1 1 1 2 2 2 0 HrcA protein C terminal domain Spc7 PF08317.6 gi|156937231|ref|YP_001435027.1| - 0.44 9.1 18.0 0.46 9.0 10.3 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF2450 PF10475.4 gi|156937231|ref|YP_001435027.1| - 0.46 9.3 12.6 1.1 8.1 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) DUF2479 PF10651.4 gi|156937231|ref|YP_001435027.1| - 0.59 9.6 11.1 2.9 7.3 0.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF2479) Syntaxin PF00804.20 gi|156937231|ref|YP_001435027.1| - 0.76 9.9 14.8 1e+02 3.1 10.1 2.7 1 1 0 1 1 1 0 Syntaxin Mga PF05043.8 gi|156937231|ref|YP_001435027.1| - 0.84 9.9 8.0 27 5.1 0.0 3.5 1 1 2 3 3 2 0 Mga helix-turn-helix domain Syntaxin_2 PF14523.1 gi|156937231|ref|YP_001435027.1| - 0.91 9.5 15.4 0.058 13.4 2.4 2.9 2 1 2 4 4 3 0 Syntaxin-like protein Col_cuticle_N PF01484.12 gi|156937231|ref|YP_001435027.1| - 0.98 9.1 3.6 0.79 9.4 0.3 2.3 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain TBPIP PF07106.8 gi|156937231|ref|YP_001435027.1| - 1.1 8.8 18.4 6.7 6.2 11.8 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3552 PF12072.3 gi|156937231|ref|YP_001435027.1| - 1.1 8.4 23.4 1.4 8.1 3.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) ZapA PF05164.8 gi|156937231|ref|YP_001435027.1| - 1.2 9.1 12.9 7.2 6.6 0.3 4.1 1 1 2 3 3 3 0 Cell division protein ZapA FlxA PF14282.1 gi|156937231|ref|YP_001435027.1| - 1.2 9.1 7.9 11 6.0 1.3 2.6 1 1 1 2 2 2 0 FlxA-like protein KfrA_N PF11740.3 gi|156937231|ref|YP_001435027.1| - 1.2 9.5 6.8 0.43 11.0 0.6 2.6 2 1 1 3 3 2 0 Plasmid replication region DNA-binding N-term FlaC_arch PF05377.6 gi|156937231|ref|YP_001435027.1| - 1.2 9.0 0.0 1.2 9.0 0.0 4.2 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) DUF87 PF01935.12 gi|156937231|ref|YP_001435027.1| - 1.4 8.6 7.8 2 8.2 5.0 1.5 1 1 1 2 2 2 0 Domain of unknown function DUF87 YfcL PF08891.6 gi|156937231|ref|YP_001435027.1| - 1.4 8.9 5.5 1.4 8.9 0.7 2.8 1 1 2 3 3 3 0 YfcL protein TPR_MLP1_2 PF07926.7 gi|156937231|ref|YP_001435027.1| - 1.4 8.6 18.9 26 4.5 4.7 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein ING PF12998.2 gi|156937231|ref|YP_001435027.1| - 1.5 9.0 14.6 48 4.2 10.1 2.3 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Allexi_40kDa PF05549.6 gi|156937231|ref|YP_001435027.1| - 1.6 7.9 7.7 0.89 8.7 1.9 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein Ax_dynein_light PF10211.4 gi|156937231|ref|YP_001435027.1| - 1.7 8.4 17.7 3.6 7.3 5.5 2.3 1 1 1 2 2 2 0 Axonemal dynein light chain DUF1796 PF08795.5 gi|156937231|ref|YP_001435027.1| - 1.7 8.2 5.5 4.7 6.8 2.7 2.2 1 1 1 2 2 2 0 Putative papain-like cysteine peptidase (DUF1796) Kinetocho_Slk19 PF12709.2 gi|156937231|ref|YP_001435027.1| - 1.8 8.7 14.0 4.1 7.5 1.9 3.4 1 1 1 2 2 2 0 Central kinetochore-associated HrpB7 PF09486.5 gi|156937231|ref|YP_001435027.1| - 1.8 8.4 9.6 14 5.6 0.2 2.9 1 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF4094 PF13334.1 gi|156937231|ref|YP_001435027.1| - 1.9 8.9 6.0 10 6.5 1.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Mt_ATP-synt_D PF05873.7 gi|156937231|ref|YP_001435027.1| - 2 8.0 8.7 1.8 8.1 2.1 2.5 1 1 2 3 3 3 0 ATP synthase D chain, mitochondrial (ATP5H) Uds1 PF15456.1 gi|156937231|ref|YP_001435027.1| - 2.1 8.3 13.1 36 4.3 7.5 2.9 1 1 1 2 2 2 0 Up-regulated During Septation DUF4200 PF13863.1 gi|156937231|ref|YP_001435027.1| - 2.1 8.2 21.9 7.3 6.5 15.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) GP41 PF00517.12 gi|156937231|ref|YP_001435027.1| - 2.2 7.8 8.6 37 3.7 6.0 2.5 1 1 0 1 1 1 0 Retroviral envelope protein LMBR1 PF04791.11 gi|156937231|ref|YP_001435027.1| - 2.4 6.6 8.6 5.2 5.5 6.0 1.4 1 1 0 1 1 1 0 LMBR1-like membrane protein YtxH PF12732.2 gi|156937231|ref|YP_001435027.1| - 2.5 8.5 10.1 17 5.8 0.2 2.9 1 1 1 2 2 2 0 YtxH-like protein AKNA PF12443.3 gi|156937231|ref|YP_001435027.1| - 2.6 8.1 10.9 18 5.3 0.2 3.5 1 1 2 3 3 3 0 AT-hook-containing transcription factor TMPIT PF07851.8 gi|156937231|ref|YP_001435027.1| - 2.9 6.8 10.3 1.6 7.7 4.1 1.9 1 1 1 2 2 2 0 TMPIT-like protein Med9 PF07544.8 gi|156937231|ref|YP_001435027.1| - 3.5 7.4 14.6 0.29 10.9 0.2 3.1 1 1 1 2 2 1 0 RNA polymerase II transcription mediator complex subunit 9 KH_2 PF07650.12 gi|156937231|ref|YP_001435027.1| - 3.6 7.2 11.3 2.5 7.7 0.1 3.6 1 1 2 3 3 3 0 KH domain Matrilin_ccoil PF10393.4 gi|156937231|ref|YP_001435027.1| - 3.9 6.9 10.3 15 5.0 0.2 4.7 2 1 3 5 5 4 0 Trimeric coiled-coil oligomerisation domain of matrilin KMP11 PF03037.11 gi|156937231|ref|YP_001435027.1| - 4.8 7.8 10.9 1.9 9.1 3.1 3.1 2 1 1 3 3 2 0 Kinetoplastid membrane protein 11 ACCA PF03255.9 gi|156937231|ref|YP_001435027.1| - 4.9 6.6 10.6 1.8 8.0 1.1 2.3 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF2203 PF09969.4 gi|156937231|ref|YP_001435027.1| - 5.3 7.2 8.7 3.1 8.0 2.4 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) UPF0449 PF15136.1 gi|156937231|ref|YP_001435027.1| - 5.4 7.3 14.4 4.9 7.4 1.9 3.4 1 1 2 3 3 3 0 Uncharacterised protein family UPF0449 FemAB PF02388.11 gi|156937231|ref|YP_001435027.1| - 5.8 5.4 7.6 13 4.2 5.3 1.8 1 1 0 1 1 1 0 FemAB family DUF1451 PF07295.6 gi|156937231|ref|YP_001435027.1| - 6.7 6.4 9.7 22 4.7 6.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) PMC2NT PF08066.7 gi|156937231|ref|YP_001435027.1| - 7.1 7.0 11.8 4.3 7.7 3.0 2.9 2 1 1 3 3 3 0 PMC2NT (NUC016) domain ECM11 PF15463.1 gi|156937231|ref|YP_001435027.1| - 7.2 6.8 18.8 6.8 6.9 4.5 3.1 1 1 2 3 3 3 0 Extracellular mutant protein 11 pRN1_helical PF13010.1 gi|156937231|ref|YP_001435027.1| - 9.4 5.8 11.7 1.3 8.6 0.8 2.4 1 1 1 2 2 2 0 Primase helical domain Macro PF01661.16 gi|156937232|ref|YP_001435028.1| - 9.5e-29 99.7 0.2 1.4e-28 99.1 0.1 1.3 1 0 0 1 1 1 1 Macro domain Exosortase_EpsH PF09721.5 gi|156937233|ref|YP_001435029.1| - 4.9e-06 25.9 13.1 6.9e-06 25.4 9.1 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Glycos_transf_2 PF00535.21 gi|156937234|ref|YP_001435030.1| - 5.8e-32 110.6 0.0 8.2e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|156937234|ref|YP_001435030.1| - 5.3e-20 71.5 6.7 8.3e-20 70.9 4.7 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|156937234|ref|YP_001435030.1| - 2.4e-14 53.7 0.0 3.8e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|156937234|ref|YP_001435030.1| - 9.4e-07 28.1 0.0 1.1e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|156937234|ref|YP_001435030.1| - 0.0014 17.9 0.0 0.0046 16.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 CofC PF01983.11 gi|156937234|ref|YP_001435030.1| - 0.017 14.0 0.1 0.026 13.4 0.1 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like NTP_transferase PF00483.18 gi|156937234|ref|YP_001435030.1| - 0.069 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Prenyltrans_2 PF13249.1 gi|156937235|ref|YP_001435031.1| - 1.5e-25 89.7 1.7 1.3e-09 38.4 0.0 3.6 1 1 3 4 4 4 4 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|156937235|ref|YP_001435031.1| - 9.3e-15 54.5 0.2 1.2e-06 28.5 0.0 4.0 1 1 3 4 4 4 4 Prenyltransferase-like Pec_lyase PF09492.5 gi|156937235|ref|YP_001435031.1| - 8.4e-07 28.4 0.0 0.0013 17.9 0.0 3.4 2 1 1 3 3 3 2 Pectic acid lyase Prenyltrans PF00432.16 gi|156937235|ref|YP_001435031.1| - 0.0004 19.8 15.1 0.011 15.2 0.1 5.7 7 0 0 7 7 7 2 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|156937235|ref|YP_001435031.1| - 0.15 11.2 0.7 22 4.1 0.0 3.3 3 1 1 4 4 4 0 A-macroglobulin complement component DUF1297 PF06973.7 gi|156937236|ref|YP_001435032.1| - 4.9e-71 237.9 0.0 6.3e-71 237.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|156937236|ref|YP_001435032.1| - 4.6e-46 155.6 0.0 6.4e-46 155.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|156937236|ref|YP_001435032.1| - 2.2e-05 24.2 0.1 0.0027 17.4 0.0 2.5 2 1 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|156937236|ref|YP_001435032.1| - 0.062 13.1 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain Sm_multidrug_ex PF06695.6 gi|156937237|ref|YP_001435033.1| - 3.5e-24 85.2 0.6 4.2e-24 85.0 0.4 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein SNARE_assoc PF09335.6 gi|156937237|ref|YP_001435033.1| - 0.0017 18.5 0.9 0.0023 18.1 0.6 1.2 1 0 0 1 1 1 1 SNARE associated Golgi protein DNA_ligase_A_N PF04675.9 gi|156937237|ref|YP_001435033.1| - 0.047 13.5 0.0 0.065 13.0 0.0 1.1 1 0 0 1 1 1 0 DNA ligase N terminus CBS PF00571.23 gi|156937238|ref|YP_001435034.1| - 3e-16 58.9 0.2 7.9e-08 31.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain SnAC PF14619.1 gi|156937238|ref|YP_001435034.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Snf2-ATP coupling, chromatin remodelling complex Fer2_3 PF13085.1 gi|156937239|ref|YP_001435035.1| - 1.1e-33 115.2 0.0 2.1e-33 114.4 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|156937239|ref|YP_001435035.1| - 2.1e-10 40.4 5.0 2.1e-10 40.4 3.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156937239|ref|YP_001435035.1| - 2.8e-07 30.8 2.0 2.8e-07 30.8 1.4 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156937239|ref|YP_001435035.1| - 9.9e-07 29.0 4.7 9.9e-07 29.0 3.3 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|156937239|ref|YP_001435035.1| - 1.4e-05 24.7 0.2 3.8e-05 23.4 0.2 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_9 PF13187.1 gi|156937239|ref|YP_001435035.1| - 1.9e-05 24.8 7.9 1.9e-05 24.8 5.5 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156937239|ref|YP_001435035.1| - 7.5e-05 22.5 7.7 0.015 15.1 0.7 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156937239|ref|YP_001435035.1| - 0.00019 21.7 10.7 0.00019 21.7 7.4 2.9 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156937239|ref|YP_001435035.1| - 0.0013 18.4 13.1 0.0069 16.1 7.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.22 gi|156937239|ref|YP_001435035.1| - 0.009 15.7 0.2 0.009 15.7 0.2 2.1 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|156937239|ref|YP_001435035.1| - 0.016 15.0 1.5 0.016 15.0 1.0 3.4 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|156937239|ref|YP_001435035.1| - 0.017 15.0 1.3 0.017 15.0 0.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|156937239|ref|YP_001435035.1| - 0.077 13.5 4.1 9.5 6.8 0.3 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|156937239|ref|YP_001435035.1| - 0.12 13.1 15.3 1.1 10.0 8.4 3.3 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|156937239|ref|YP_001435035.1| - 0.2 12.0 7.5 8.1 6.9 0.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|156937239|ref|YP_001435035.1| - 0.51 10.0 22.8 0.13 11.8 2.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156937239|ref|YP_001435035.1| - 0.67 10.4 18.3 0.18 12.2 1.6 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain DUF123 PF01986.11 gi|156937240|ref|YP_001435036.1| - 2.5e-22 78.8 0.0 3.4e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Aldo_ket_red PF00248.16 gi|156937242|ref|YP_001435038.1| - 1.9e-41 141.7 0.0 2.2e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HPPK PF01288.15 gi|156937242|ref|YP_001435038.1| - 0.017 14.8 0.0 0.052 13.2 0.0 1.8 2 0 0 2 2 2 0 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) THUMP PF02926.12 gi|156937243|ref|YP_001435039.1| - 2.6e-07 30.6 0.2 3.7e-07 30.1 0.1 1.1 1 0 0 1 1 1 1 THUMP domain DUF1351 PF07083.6 gi|156937244|ref|YP_001435040.1| - 0.033 13.7 0.0 0.04 13.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1351) Remorin_C PF03763.8 gi|156937244|ref|YP_001435040.1| - 0.052 13.0 1.3 0.067 12.7 0.9 1.1 1 0 0 1 1 1 0 Remorin, C-terminal region GSG-1 PF07803.6 gi|156937244|ref|YP_001435040.1| - 0.064 12.8 0.0 0.077 12.5 0.0 1.1 1 0 0 1 1 1 0 GSG1-like protein Ribosomal_60s PF00428.14 gi|156937245|ref|YP_001435041.1| - 1.8e-18 66.6 23.1 2.3e-18 66.3 16.0 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|156937245|ref|YP_001435041.1| - 0.0021 17.8 5.9 0.3 11.0 0.0 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain Sigma70_ner PF04546.8 gi|156937245|ref|YP_001435041.1| - 0.058 12.9 4.3 0.069 12.7 2.9 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF2226 PF09987.4 gi|156937245|ref|YP_001435041.1| - 0.55 9.3 5.2 0.66 9.0 3.6 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) BSP_II PF05432.6 gi|156937245|ref|YP_001435041.1| - 0.82 8.8 7.7 0.83 8.8 5.3 1.2 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) DUF2890 PF11081.3 gi|156937245|ref|YP_001435041.1| - 2.3 8.2 6.4 3.1 7.8 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) DUF137 PF02006.11 gi|156937246|ref|YP_001435042.1| - 1.7e-73 245.8 0.8 2.1e-73 245.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 TPP_enzyme_M PF00205.17 gi|156937246|ref|YP_001435042.1| - 0.0014 18.3 3.2 0.013 15.2 1.2 2.6 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DNA_photolyase PF00875.13 gi|156937246|ref|YP_001435042.1| - 0.017 14.8 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 DNA photolyase TIR_2 PF13676.1 gi|156937246|ref|YP_001435042.1| - 0.056 13.5 1.4 0.77 9.9 0.0 3.2 3 1 0 3 3 3 0 TIR domain HEM4 PF02602.10 gi|156937246|ref|YP_001435042.1| - 0.069 12.3 0.4 0.15 11.2 0.3 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Proteasome PF00227.21 gi|156937247|ref|YP_001435043.1| - 3.7e-57 192.6 0.0 4.7e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|156937247|ref|YP_001435043.1| - 5.2e-15 54.4 0.2 1.6e-14 52.9 0.2 1.9 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SSF PF00474.12 gi|156937248|ref|YP_001435044.1| - 5e-70 236.2 27.1 1.3e-69 234.8 18.8 1.7 1 1 0 1 1 1 1 Sodium:solute symporter family DUF485 PF04341.7 gi|156937249|ref|YP_001435045.1| - 2.6e-13 49.4 4.4 2.7e-13 49.4 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF485 Usp PF00582.21 gi|156937250|ref|YP_001435046.1| - 8.6e-34 116.7 1.9 1e-33 116.4 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|156937250|ref|YP_001435046.1| - 0.0037 16.5 0.3 0.012 14.8 0.1 1.6 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel DXP_reductoisom PF02670.11 gi|156937250|ref|YP_001435046.1| - 0.004 17.7 1.6 0.0056 17.2 1.0 1.4 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase SIMPL PF04402.9 gi|156937250|ref|YP_001435046.1| - 0.049 13.4 1.4 0.17 11.7 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF541) Ag332 PF04671.7 gi|156937250|ref|YP_001435046.1| - 0.059 13.1 2.8 0.17 11.7 0.3 2.8 2 1 0 2 2 2 0 Erythrocyte membrane-associated giant protein antigen 332 UbiA PF01040.13 gi|156937251|ref|YP_001435047.1| - 1.6e-30 106.2 18.9 2e-30 105.9 13.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Radical_SAM PF04055.16 gi|156937252|ref|YP_001435048.1| - 2.2e-19 70.2 0.0 3.1e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|156937252|ref|YP_001435048.1| - 1.1e-09 38.3 0.2 1.9e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|156937252|ref|YP_001435048.1| - 4.5e-09 36.5 0.1 7.3e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AhpC-TSA PF00578.16 gi|156937253|ref|YP_001435049.1| - 9.5e-35 118.9 0.0 1.3e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|156937253|ref|YP_001435049.1| - 2.8e-16 59.3 0.0 4.4e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|156937253|ref|YP_001435049.1| - 1e-13 50.6 0.9 1.8e-13 49.8 0.1 1.8 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.1 gi|156937253|ref|YP_001435049.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme RAMPs PF03787.10 gi|156937254|ref|YP_001435050.1| - 6.8e-30 104.5 0.0 8.2e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.5 gi|156937255|ref|YP_001435051.1| - 5.3e-05 23.3 0.1 8.5e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.10 gi|156937256|ref|YP_001435052.1| - 3.9e-08 33.4 0.1 6.1e-07 29.5 0.0 2.2 1 1 1 2 2 2 2 RAMP superfamily DUF3692 PF12469.3 gi|156937257|ref|YP_001435053.1| - 6.1e-23 81.2 0.0 2e-22 79.6 0.0 2.0 1 0 0 1 1 1 1 CRISPR-associated protein Cas_Cmr3 PF09700.5 gi|156937258|ref|YP_001435054.1| - 0.0015 18.0 0.3 0.073 12.4 0.0 2.3 2 1 0 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) tRNA-synt_1f PF01921.13 gi|156937259|ref|YP_001435055.1| - 1.2e-96 323.5 0.1 3.9e-96 321.8 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|156937259|ref|YP_001435055.1| - 0.00022 20.4 0.0 0.6 9.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|156937259|ref|YP_001435055.1| - 0.0019 16.9 0.0 0.018 13.7 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (M) eIF-5_eIF-2B PF01873.12 gi|156937259|ref|YP_001435055.1| - 0.0076 15.9 0.0 0.03 13.9 0.0 2.0 2 0 0 2 2 2 1 Domain found in IF2B/IF5 HMG_box_5 PF14887.1 gi|156937259|ref|YP_001435055.1| - 0.014 15.1 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 HMG (high mobility group) box 5 Zn_Tnp_IS1595 PF12760.2 gi|156937259|ref|YP_001435055.1| - 0.027 14.2 0.5 0.068 12.9 0.3 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Thioredoxin_5 PF13743.1 gi|156937259|ref|YP_001435055.1| - 0.047 13.2 0.1 5.6 6.4 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin Rubredoxin PF00301.15 gi|156937259|ref|YP_001435055.1| - 0.15 11.9 1.1 3.3 7.6 0.1 2.8 2 0 0 2 2 2 0 Rubredoxin GATase PF00117.23 gi|156937260|ref|YP_001435056.1| - 1.1e-43 148.8 0.0 1.4e-43 148.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|156937260|ref|YP_001435056.1| - 2.7e-18 66.2 0.0 5.8e-18 65.1 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|156937260|ref|YP_001435056.1| - 0.002 17.7 0.0 0.014 15.0 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family PDDEXK_1 PF12705.2 gi|156937261|ref|YP_001435057.1| - 1.7e-12 47.2 3.0 3e-08 33.3 0.1 2.3 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|156937261|ref|YP_001435057.1| - 6.2e-11 42.4 0.0 8.1e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 SelB-wing_2 PF09106.6 gi|156937261|ref|YP_001435057.1| - 0.12 12.3 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Lactamase_B PF00753.22 gi|156937262|ref|YP_001435058.1| - 3.9e-11 42.9 0.1 8.6e-11 41.8 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ABC_tran PF00005.22 gi|156937264|ref|YP_001435060.1| - 2.6e-15 56.9 0.0 3.3e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156937264|ref|YP_001435060.1| - 1.5e-08 34.9 0.1 0.00012 22.1 0.0 2.0 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156937264|ref|YP_001435060.1| - 7.9e-05 21.9 0.2 0.18 11.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|156937264|ref|YP_001435060.1| - 0.0034 16.8 0.0 0.006 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|156937264|ref|YP_001435060.1| - 0.0058 16.9 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|156937264|ref|YP_001435060.1| - 0.026 14.5 0.2 0.056 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|156937264|ref|YP_001435060.1| - 0.047 12.5 0.0 0.089 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|156937264|ref|YP_001435060.1| - 0.05 13.5 0.5 0.3 11.0 0.3 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|156937264|ref|YP_001435060.1| - 0.058 13.7 0.6 0.3 11.3 0.4 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|156937264|ref|YP_001435060.1| - 0.1 12.2 0.1 0.39 10.3 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|156937264|ref|YP_001435060.1| - 0.14 13.0 0.7 0.51 11.1 0.5 2.0 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|156937265|ref|YP_001435061.1| - 0.0002 20.9 2.6 0.0002 20.9 1.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Na_Ca_ex PF01699.19 gi|156937265|ref|YP_001435061.1| - 1.1 8.7 6.6 0.11 12.0 0.8 2.0 2 1 0 2 2 2 0 Sodium/calcium exchanger protein PBP_like_2 PF12849.2 gi|156937266|ref|YP_001435062.1| - 1.8e-16 60.4 0.0 2.4e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|156937266|ref|YP_001435062.1| - 2.4e-06 27.3 0.0 4.4e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|156937266|ref|YP_001435062.1| - 4e-05 22.6 0.0 5.6e-05 22.1 0.0 1.3 1 1 0 1 1 1 1 PBP superfamily domain GMAP PF06540.6 gi|156937266|ref|YP_001435062.1| - 0.097 12.3 0.4 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 Galanin message associated peptide (GMAP) 7kD_coat PF02495.12 gi|156937266|ref|YP_001435062.1| - 0.099 12.1 0.9 14 5.2 0.0 2.3 2 0 0 2 2 2 0 7kD viral coat protein DUF1496 PF07383.7 gi|156937267|ref|YP_001435063.1| - 0.041 13.1 0.0 0.096 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1496) Peptidase_MA_2 PF13485.1 gi|156937268|ref|YP_001435064.1| - 2.5e-06 27.5 1.4 4.2e-06 26.8 0.9 1.6 1 1 0 1 1 1 1 Peptidase MA superfamily DUF4157 PF13699.1 gi|156937268|ref|YP_001435064.1| - 0.12 12.5 0.3 0.28 11.3 0.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4157) AMP-binding_C_2 PF14535.1 gi|156937269|ref|YP_001435065.1| - 5.9e-16 58.3 0.0 1.1e-15 57.3 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|156937269|ref|YP_001435065.1| - 0.00015 20.2 0.3 0.00029 19.3 0.2 1.4 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.8 gi|156937269|ref|YP_001435065.1| - 0.0065 15.0 0.0 0.079 11.4 0.0 2.0 2 0 0 2 2 2 1 GH3 auxin-responsive promoter LuxE PF04443.7 gi|156937269|ref|YP_001435065.1| - 0.017 13.7 0.0 0.027 13.1 0.0 1.2 1 0 0 1 1 1 0 Acyl-protein synthetase, LuxE HMG-CoA_red PF00368.13 gi|156937270|ref|YP_001435066.1| - 2.1e-149 497.2 0.3 2.4e-149 497.0 0.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Exonuc_VII_S PF02609.11 gi|156937270|ref|YP_001435066.1| - 0.11 12.3 0.6 0.23 11.2 0.4 1.6 1 0 0 1 1 1 0 Exonuclease VII small subunit PQQ_2 PF13360.1 gi|156937271|ref|YP_001435067.1| - 0.00096 18.6 0.1 0.002 17.6 0.0 1.4 1 1 0 1 1 1 1 PQQ-like domain PQQ_3 PF13570.1 gi|156937271|ref|YP_001435067.1| - 0.35 11.1 6.3 0.97 9.8 0.3 3.5 2 1 1 3 3 3 0 PQQ-like domain TGT PF01702.13 gi|156937272|ref|YP_001435068.1| - 2.2e-43 148.2 0.0 2.9e-43 147.8 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Glyco_hydro_3 PF00933.16 gi|156937272|ref|YP_001435068.1| - 0.0027 16.7 0.0 0.0045 16.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain FtsX PF02687.16 gi|156937273|ref|YP_001435069.1| - 7.9e-22 77.2 5.6 7.9e-22 77.2 3.9 2.0 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|156937273|ref|YP_001435069.1| - 1.7e-19 70.3 0.2 1.7e-19 70.3 0.1 1.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain YjgP_YjgQ PF03739.9 gi|156937273|ref|YP_001435069.1| - 0.0016 17.2 4.1 0.0027 16.5 2.5 1.6 1 1 0 1 1 1 1 Predicted permease YjgP/YjgQ family K1 PF02960.9 gi|156937273|ref|YP_001435069.1| - 0.018 15.1 0.6 0.54 10.3 0.0 2.3 1 1 1 2 2 2 0 K1 glycoprotein Polysacc_synt_C PF14667.1 gi|156937273|ref|YP_001435069.1| - 0.36 10.6 12.6 0.067 12.9 5.2 2.2 2 1 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain NPCBM_assoc PF10633.4 gi|156937274|ref|YP_001435070.1| - 2.9e-15 56.0 5.6 0.001 19.0 0.0 7.1 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|156937274|ref|YP_001435070.1| - 6.2e-15 55.0 0.0 0.0069 16.4 0.0 5.8 6 0 0 6 6 6 4 CARDB DUF4352 PF11611.3 gi|156937274|ref|YP_001435070.1| - 2.5e-05 24.4 0.0 0.2 11.8 0.0 4.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4352) Transglut_C PF00927.17 gi|156937274|ref|YP_001435070.1| - 0.0032 17.5 0.0 0.5 10.4 0.0 3.9 5 0 0 5 5 5 1 Transglutaminase family, C-terminal ig like domain TRAP_beta PF05753.9 gi|156937274|ref|YP_001435070.1| - 0.026 13.7 0.4 3.1 6.9 0.0 3.5 3 1 0 3 3 3 0 Translocon-associated protein beta (TRAPB) BatA PF07584.6 gi|156937274|ref|YP_001435070.1| - 0.066 13.4 0.5 0.17 12.0 0.2 1.8 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal Mrr_cat PF04471.7 gi|156937275|ref|YP_001435071.1| - 2.5e-05 24.0 0.0 0.00012 21.8 0.0 1.9 2 0 0 2 2 2 1 Restriction endonuclease AP_endonuc_2 PF01261.19 gi|156937275|ref|YP_001435071.1| - 0.063 12.5 0.0 0.12 11.6 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Coatomer_WDAD PF04053.9 gi|156937276|ref|YP_001435072.1| - 0.0016 17.3 0.1 0.0026 16.6 0.1 1.5 1 0 0 1 1 1 1 Coatomer WD associated region NAD_binding_7 PF13241.1 gi|156937277|ref|YP_001435073.1| - 3e-26 91.6 0.6 5e-26 90.9 0.4 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|156937277|ref|YP_001435073.1| - 1.8e-08 34.3 0.6 2.9e-08 33.7 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|156937277|ref|YP_001435073.1| - 7e-08 32.6 0.5 1.2e-07 31.9 0.2 1.4 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|156937277|ref|YP_001435073.1| - 2.9e-05 23.4 0.5 4.6e-05 22.7 0.3 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|156937277|ref|YP_001435073.1| - 3.2e-05 23.1 0.0 6.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|156937277|ref|YP_001435073.1| - 0.00057 19.6 0.5 0.002 17.8 0.3 2.0 1 1 1 2 2 2 1 Rossmann-like domain Pyr_redox_2 PF07992.9 gi|156937277|ref|YP_001435073.1| - 0.00065 19.6 0.5 0.00096 19.0 0.3 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DFP PF04127.10 gi|156937277|ref|YP_001435073.1| - 0.0022 17.6 0.1 0.0045 16.6 0.0 1.6 1 1 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein 3HCDH_N PF02737.13 gi|156937277|ref|YP_001435073.1| - 0.0032 17.1 2.5 0.011 15.3 0.1 2.2 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|156937277|ref|YP_001435073.1| - 0.0048 16.6 0.6 0.022 14.5 0.4 2.0 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|156937277|ref|YP_001435073.1| - 0.0055 16.7 0.1 0.013 15.6 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|156937277|ref|YP_001435073.1| - 0.0058 16.4 4.4 0.098 12.4 0.4 2.4 1 1 1 2 2 2 1 ThiF family UDPG_MGDP_dh_C PF03720.10 gi|156937277|ref|YP_001435073.1| - 0.0063 16.6 0.3 0.012 15.7 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|156937277|ref|YP_001435073.1| - 0.018 15.4 0.5 0.056 13.8 0.2 2.0 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|156937277|ref|YP_001435073.1| - 0.02 15.3 2.2 0.051 13.9 0.3 2.4 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|156937277|ref|YP_001435073.1| - 0.024 14.5 1.1 0.059 13.2 0.7 1.7 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Semialdhyde_dh PF01118.19 gi|156937277|ref|YP_001435073.1| - 0.03 14.6 0.7 0.085 13.1 0.3 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|156937277|ref|YP_001435073.1| - 0.034 13.1 0.0 0.034 13.1 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|156937277|ref|YP_001435073.1| - 0.05 14.1 0.5 0.28 11.6 0.2 2.3 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.16 gi|156937277|ref|YP_001435073.1| - 0.059 12.9 3.0 0.35 10.4 2.1 2.0 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|156937277|ref|YP_001435073.1| - 0.06 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain IlvN PF07991.7 gi|156937277|ref|YP_001435073.1| - 0.062 12.6 0.4 0.17 11.2 0.1 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain Epimerase PF01370.16 gi|156937277|ref|YP_001435073.1| - 0.067 12.6 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Translat_reg PF01818.12 gi|156937277|ref|YP_001435073.1| - 0.076 12.5 1.0 0.16 11.4 0.1 1.8 2 0 0 2 2 2 0 Bacteriophage translational regulator 3Beta_HSD PF01073.14 gi|156937277|ref|YP_001435073.1| - 0.078 11.6 0.3 0.14 10.8 0.2 1.4 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family PTS_2-RNA PF01885.11 gi|156937278|ref|YP_001435074.1| - 8.5e-40 136.0 0.1 1e-39 135.7 0.1 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.15 gi|156937278|ref|YP_001435074.1| - 0.0064 15.9 0.0 0.0088 15.4 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain Thg1 PF04446.7 gi|156937279|ref|YP_001435075.1| - 4.9e-19 68.2 0.0 7.4e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Proho_convert PF12177.3 gi|156937279|ref|YP_001435075.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Prohormone convertase enzyme HTH_3 PF01381.17 gi|156937280|ref|YP_001435076.1| - 1e-11 44.5 0.5 1.6e-11 43.8 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|156937280|ref|YP_001435076.1| - 4.7e-09 36.3 1.5 7.5e-09 35.6 1.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|156937280|ref|YP_001435076.1| - 9.6e-07 28.7 0.3 1.5e-06 28.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sgf11 PF08209.6 gi|156937280|ref|YP_001435076.1| - 0.036 13.3 0.9 3.2 7.1 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DZR PF12773.2 gi|156937280|ref|YP_001435076.1| - 0.066 13.0 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Foamy_BEL PF03274.9 gi|156937280|ref|YP_001435076.1| - 0.088 12.0 0.1 0.11 11.6 0.1 1.1 1 0 0 1 1 1 0 Foamy virus BEL 1/2 protein PHD PF00628.24 gi|156937280|ref|YP_001435076.1| - 0.14 11.8 0.5 0.35 10.5 0.4 1.7 1 1 1 2 2 2 0 PHD-finger HTH_25 PF13413.1 gi|156937280|ref|YP_001435076.1| - 0.15 11.6 0.9 0.28 10.8 0.6 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|156937281|ref|YP_001435077.1| - 2.8e-26 92.6 0.0 1.1e-25 90.6 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|156937281|ref|YP_001435077.1| - 3e-09 37.0 0.8 7.7e-09 35.7 0.6 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|156937281|ref|YP_001435077.1| - 3.3e-09 36.7 0.0 7.2e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|156937281|ref|YP_001435077.1| - 4.2e-09 36.6 0.0 1.1e-08 35.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|156937281|ref|YP_001435077.1| - 5.2e-05 22.6 0.1 0.00024 20.4 0.0 2.1 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|156937281|ref|YP_001435077.1| - 0.00039 20.1 0.1 0.00091 18.9 0.0 1.6 1 1 0 1 1 1 1 HMGL-like Radical_SAM PF04055.16 gi|156937282|ref|YP_001435078.1| - 2.1e-13 50.8 0.0 3.8e-13 49.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|156937282|ref|YP_001435078.1| - 2.6e-08 34.0 0.0 6e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|156937282|ref|YP_001435078.1| - 7.4e-05 22.7 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2284 PF10050.4 gi|156937282|ref|YP_001435078.1| - 0.11 12.0 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) Abhydrolase_5 PF12695.2 gi|156937283|ref|YP_001435079.1| - 2.4e-15 56.5 0.0 1.5e-14 53.9 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|156937283|ref|YP_001435079.1| - 1e-12 48.4 0.4 9.9e-11 41.9 0.3 2.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|156937283|ref|YP_001435079.1| - 2.3e-09 36.8 0.0 2.8e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|156937283|ref|YP_001435079.1| - 1.7e-07 31.0 0.0 2.7e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_1 PF00561.15 gi|156937283|ref|YP_001435079.1| - 2.7e-07 30.3 0.0 0.00024 20.7 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|156937283|ref|YP_001435079.1| - 2.5e-05 24.0 0.0 5e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) Abhydrolase_2 PF02230.11 gi|156937283|ref|YP_001435079.1| - 5.5e-05 22.7 0.8 0.0077 15.6 0.0 2.9 1 1 1 3 3 3 1 Phospholipase/Carboxylesterase DLH PF01738.13 gi|156937283|ref|YP_001435079.1| - 0.00021 20.6 0.0 0.0038 16.5 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|156937283|ref|YP_001435079.1| - 0.0015 18.0 0.1 0.0025 17.3 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) DUF2048 PF09752.4 gi|156937283|ref|YP_001435079.1| - 0.0051 15.7 1.8 0.43 9.3 0.0 2.1 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2048) Lipase_3 PF01764.20 gi|156937283|ref|YP_001435079.1| - 0.021 14.4 1.7 0.043 13.4 0.7 2.0 2 1 1 3 3 3 0 Lipase (class 3) Smr PF01713.16 gi|156937283|ref|YP_001435079.1| - 0.053 13.7 0.3 0.67 10.1 0.0 2.7 2 2 1 3 3 3 0 Smr domain BAAT_C PF08840.6 gi|156937283|ref|YP_001435079.1| - 0.092 12.4 0.1 0.61 9.7 0.0 1.8 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal LIP PF03583.9 gi|156937283|ref|YP_001435079.1| - 0.16 11.1 0.0 0.26 10.4 0.0 1.5 1 0 0 1 1 1 0 Secretory lipase AIRS_C PF02769.17 gi|156937284|ref|YP_001435080.1| - 1.1e-25 90.4 0.4 1.5e-25 89.9 0.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|156937284|ref|YP_001435080.1| - 7e-18 64.6 0.1 1.7e-17 63.4 0.1 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain RNA_pol_Rpb2_4 PF04566.8 gi|156937285|ref|YP_001435081.1| - 0.099 12.4 0.0 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 ABC_ATPase PF09818.4 gi|156937286|ref|YP_001435082.1| - 4.7e-142 473.7 0.0 6.7e-142 473.1 0.0 1.2 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|156937286|ref|YP_001435082.1| - 0.024 14.0 0.0 0.058 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|156937286|ref|YP_001435082.1| - 0.036 14.1 0.0 0.094 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|156937286|ref|YP_001435082.1| - 0.052 13.4 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|156937286|ref|YP_001435082.1| - 0.11 12.7 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Lar_restr_allev PF14354.1 gi|156937287|ref|YP_001435083.1| - 0.0014 18.8 2.0 0.54 10.5 0.1 2.1 1 1 1 2 2 2 2 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|156937287|ref|YP_001435083.1| - 0.0015 17.6 4.3 0.021 14.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|156937287|ref|YP_001435083.1| - 0.0016 18.0 0.0 0.002 17.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|156937287|ref|YP_001435083.1| - 0.0025 17.4 1.6 0.61 9.7 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|156937287|ref|YP_001435083.1| - 0.012 15.0 5.1 0.19 11.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|156937287|ref|YP_001435083.1| - 0.022 14.7 1.2 5.7 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|156937287|ref|YP_001435083.1| - 0.023 14.5 0.3 0.74 9.6 0.0 2.1 2 0 0 2 2 2 0 Double zinc ribbon HTH_OrfB_IS605 PF12323.3 gi|156937287|ref|YP_001435083.1| - 0.033 13.5 0.0 0.065 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|156937287|ref|YP_001435083.1| - 0.033 14.1 1.2 6.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|156937287|ref|YP_001435083.1| - 0.039 13.4 4.6 1.5 8.4 0.2 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CSL PF05207.8 gi|156937287|ref|YP_001435083.1| - 0.043 13.3 0.2 5.9 6.4 0.0 2.1 2 0 0 2 2 2 0 CSL zinc finger DUF2082 PF09855.4 gi|156937287|ref|YP_001435083.1| - 0.046 13.5 2.1 0.48 10.3 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) OrfB_Zn_ribbon PF07282.6 gi|156937287|ref|YP_001435083.1| - 0.052 13.2 3.6 0.18 11.4 2.5 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF329 PF03884.9 gi|156937287|ref|YP_001435083.1| - 0.073 12.6 0.4 3.8 7.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF329) PhnA_Zn_Ribbon PF08274.7 gi|156937287|ref|YP_001435083.1| - 0.093 12.5 2.5 4.1 7.2 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DnaJ_CXXCXGXG PF00684.14 gi|156937287|ref|YP_001435083.1| - 0.11 12.5 0.6 0.17 11.9 0.4 1.3 1 0 0 1 1 1 0 DnaJ central domain RNA_POL_M_15KD PF02150.11 gi|156937287|ref|YP_001435083.1| - 0.12 12.0 5.1 0.48 10.1 0.5 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2752 PF10825.3 gi|156937287|ref|YP_001435083.1| - 0.13 12.3 5.8 0.35 10.9 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) zinc_ribbon_5 PF13719.1 gi|156937287|ref|YP_001435083.1| - 0.15 11.6 1.5 1.5 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.6 gi|156937287|ref|YP_001435083.1| - 0.16 11.8 1.0 10 6.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Zn_Tnp_IS1595 PF12760.2 gi|156937287|ref|YP_001435083.1| - 0.19 11.5 6.8 2.8 7.8 0.7 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|156937287|ref|YP_001435083.1| - 0.2 10.9 6.2 5.7 6.3 0.0 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|156937287|ref|YP_001435083.1| - 0.22 10.9 1.2 1.2 8.6 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.5 gi|156937287|ref|YP_001435083.1| - 0.23 11.3 3.4 1.3 8.9 0.3 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.4 gi|156937287|ref|YP_001435083.1| - 0.25 11.0 5.3 0.33 10.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3797 PF12677.2 gi|156937287|ref|YP_001435083.1| - 0.27 10.8 2.1 3.7 7.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Prim_Zn_Ribbon PF08273.7 gi|156937287|ref|YP_001435083.1| - 0.3 11.1 8.3 4.6 7.4 0.2 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|156937287|ref|YP_001435083.1| - 0.37 10.9 11.7 0.38 10.9 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) FdhE PF04216.7 gi|156937287|ref|YP_001435083.1| - 0.45 10.1 2.0 2.7 7.6 0.0 2.1 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation zinc_ribbon_4 PF13717.1 gi|156937287|ref|YP_001435083.1| - 0.59 9.8 3.1 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|156937287|ref|YP_001435083.1| - 0.63 9.2 3.7 16 4.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Gram_pos_anchor PF00746.16 gi|156937287|ref|YP_001435083.1| - 0.8 9.5 3.8 1.1 9.0 2.6 1.3 1 0 0 1 1 1 0 Gram positive anchor zf-H2C2_2 PF13465.1 gi|156937287|ref|YP_001435083.1| - 1.1 9.7 5.2 3.4 8.1 0.9 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-tcix PF14952.1 gi|156937287|ref|YP_001435083.1| - 1.3 8.3 5.8 4.7 6.6 0.1 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1936 PF09151.5 gi|156937287|ref|YP_001435083.1| - 1.4 8.4 5.4 6.8 6.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) HTH_24 PF13412.1 gi|156937288|ref|YP_001435084.1| - 5.8e-16 57.6 0.4 5.8e-16 57.6 0.3 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|156937288|ref|YP_001435084.1| - 2.6e-15 55.8 0.2 4.3e-15 55.1 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|156937288|ref|YP_001435084.1| - 4.1e-15 55.0 0.1 5.9e-15 54.5 0.0 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|156937288|ref|YP_001435084.1| - 1.6e-07 30.9 0.6 3.3e-07 29.8 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|156937288|ref|YP_001435084.1| - 5.1e-07 29.2 0.0 1.2e-06 28.1 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.15 gi|156937288|ref|YP_001435084.1| - 6.3e-07 28.9 0.0 1.3e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|156937288|ref|YP_001435084.1| - 1.4e-06 27.7 0.0 3e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|156937288|ref|YP_001435084.1| - 8.8e-06 25.2 0.3 2.7e-05 23.7 0.0 1.9 2 0 0 2 2 1 1 HTH domain MarR PF01047.17 gi|156937288|ref|YP_001435084.1| - 9e-06 25.2 0.1 1.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|156937288|ref|YP_001435084.1| - 1.1e-05 24.9 0.1 3.1e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|156937288|ref|YP_001435084.1| - 1.1e-05 25.1 0.0 2.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|156937288|ref|YP_001435084.1| - 1.3e-05 24.5 0.2 0.0004 19.7 0.0 2.4 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|156937288|ref|YP_001435084.1| - 1.6e-05 24.7 0.0 4e-05 23.5 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|156937288|ref|YP_001435084.1| - 5.5e-05 23.0 0.0 0.00014 21.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|156937288|ref|YP_001435084.1| - 7.7e-05 22.9 0.0 0.00016 21.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|156937288|ref|YP_001435084.1| - 8.5e-05 22.0 0.0 0.00014 21.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain GerE PF00196.14 gi|156937288|ref|YP_001435084.1| - 0.0001 21.5 0.0 0.00019 20.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|156937288|ref|YP_001435084.1| - 0.00025 20.5 0.0 0.00053 19.4 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain HTH_8 PF02954.14 gi|156937288|ref|YP_001435084.1| - 0.00075 18.9 0.1 0.0017 17.8 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, Fis family HTH_10 PF04967.7 gi|156937288|ref|YP_001435084.1| - 0.00078 18.9 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Mga PF05043.8 gi|156937288|ref|YP_001435084.1| - 0.0019 18.4 0.1 0.016 15.5 0.0 2.1 2 0 0 2 2 2 1 Mga helix-turn-helix domain HTH_9 PF08221.6 gi|156937288|ref|YP_001435084.1| - 0.0024 17.6 0.1 0.0099 15.7 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|156937288|ref|YP_001435084.1| - 0.0026 16.9 0.0 0.0088 15.2 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.10 gi|156937288|ref|YP_001435084.1| - 0.0032 17.3 0.0 0.075 12.9 0.0 2.6 1 1 1 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Tnp_IS630 PF01710.11 gi|156937288|ref|YP_001435084.1| - 0.0038 16.8 0.8 0.023 14.3 0.0 2.0 2 0 0 2 2 2 1 Transposase HTH_40 PF14493.1 gi|156937288|ref|YP_001435084.1| - 0.0083 16.3 0.2 0.031 14.5 0.0 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|156937288|ref|YP_001435084.1| - 0.0094 16.0 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_30 PF13556.1 gi|156937288|ref|YP_001435084.1| - 0.01 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain SpoIIID PF12116.3 gi|156937288|ref|YP_001435084.1| - 0.01 15.7 0.4 0.029 14.2 0.0 1.9 3 0 0 3 3 1 0 Stage III sporulation protein D HTH_DeoR PF08220.7 gi|156937288|ref|YP_001435084.1| - 0.014 14.8 0.0 0.035 13.6 0.0 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2089 PF09862.4 gi|156937288|ref|YP_001435084.1| - 0.015 15.0 0.4 0.057 13.1 0.0 2.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2089) FeoC PF09012.5 gi|156937288|ref|YP_001435084.1| - 0.022 14.4 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Tnp_Tc3_2 PF01498.13 gi|156937288|ref|YP_001435084.1| - 0.027 14.5 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 Transposase B-block_TFIIIC PF04182.7 gi|156937288|ref|YP_001435084.1| - 0.027 14.3 0.2 0.073 12.9 0.0 1.8 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Dabb PF07876.7 gi|156937288|ref|YP_001435084.1| - 0.028 14.8 0.1 0.064 13.6 0.0 1.7 2 0 0 2 2 1 0 Stress responsive A/B Barrel Domain Sigma70_r4 PF04545.11 gi|156937288|ref|YP_001435084.1| - 0.033 13.4 0.0 0.053 12.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 IF2_N PF04760.10 gi|156937288|ref|YP_001435084.1| - 0.035 13.7 0.2 0.1 12.2 0.0 1.9 2 0 0 2 2 1 0 Translation initiation factor IF-2, N-terminal region Terminase_5 PF06056.7 gi|156937288|ref|YP_001435084.1| - 0.049 13.1 0.0 0.089 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TetR_N PF00440.18 gi|156937288|ref|YP_001435084.1| - 0.049 13.2 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_22 PF13309.1 gi|156937288|ref|YP_001435084.1| - 0.051 13.3 0.0 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_Mga PF08280.6 gi|156937288|ref|YP_001435084.1| - 0.064 13.0 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain RepL PF05732.6 gi|156937288|ref|YP_001435084.1| - 0.073 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.15 gi|156937288|ref|YP_001435084.1| - 0.073 13.1 0.0 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator DUF2496 PF10689.4 gi|156937288|ref|YP_001435084.1| - 0.08 12.5 0.1 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2496) DUF4423 PF14394.1 gi|156937288|ref|YP_001435084.1| - 0.081 12.4 0.4 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) EAP30 PF04157.11 gi|156937288|ref|YP_001435084.1| - 0.081 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family RPA_C PF08784.6 gi|156937288|ref|YP_001435084.1| - 0.084 13.3 0.1 0.23 11.9 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_6 PF01418.12 gi|156937288|ref|YP_001435084.1| - 0.088 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family FlaC_arch PF05377.6 gi|156937288|ref|YP_001435084.1| - 1 9.3 3.8 4.2 7.3 0.1 3.1 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Pribosyltran PF00156.22 gi|156937289|ref|YP_001435085.1| - 4.2e-19 68.5 0.4 1.3e-18 66.9 0.2 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|156937289|ref|YP_001435085.1| - 0.0019 17.4 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|156937289|ref|YP_001435085.1| - 0.004 16.4 0.2 0.011 14.9 0.0 1.7 1 1 1 2 2 2 1 Phosphoribosyl transferase MTHFR PF02219.12 gi|156937290|ref|YP_001435086.1| - 9.7e-14 51.1 0.0 1.7e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase MTHFR_C PF12225.3 gi|156937290|ref|YP_001435086.1| - 4.7e-09 35.6 0.0 9e-09 34.7 0.0 1.4 1 0 0 1 1 1 1 Methylene-tetrahydrofolate reductase C terminal Radical_SAM PF04055.16 gi|156937290|ref|YP_001435086.1| - 0.0025 18.0 0.0 0.01 16.0 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily CBS PF00571.23 gi|156937291|ref|YP_001435087.1| - 5.3e-32 109.3 11.8 1.4e-12 47.1 0.2 4.1 4 0 0 4 4 4 3 CBS domain FlaG PF03646.10 gi|156937291|ref|YP_001435087.1| - 0.067 13.3 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 FlaG protein Lactamase_B_3 PF13483.1 gi|156937292|ref|YP_001435088.1| - 0.089 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HTH_psq PF05225.11 gi|156937293|ref|YP_001435089.1| - 0.017 14.6 0.2 0.05 13.1 0.0 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain Rpr2 PF04032.11 gi|156937293|ref|YP_001435089.1| - 0.057 13.2 0.4 0.1 12.4 0.3 1.8 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF3505 PF12013.3 gi|156937293|ref|YP_001435089.1| - 0.081 13.1 1.2 0.13 12.4 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3505) PapB PF03333.8 gi|156937293|ref|YP_001435089.1| - 0.085 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein DUF1028 PF06267.7 gi|156937294|ref|YP_001435090.1| - 3.7e-13 49.3 0.0 4.6e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) DUF3373 PF11853.3 gi|156937295|ref|YP_001435091.1| - 0.0033 16.0 1.1 0.0038 15.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3373) DUF948 PF06103.6 gi|156937295|ref|YP_001435091.1| - 0.0042 16.9 2.5 0.006 16.4 1.7 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) TMF_DNA_bd PF12329.3 gi|156937295|ref|YP_001435091.1| - 0.012 15.3 0.2 0.017 14.8 0.2 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4618 PF15397.1 gi|156937295|ref|YP_001435091.1| - 0.013 14.8 0.5 0.013 14.8 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DUF4200 PF13863.1 gi|156937295|ref|YP_001435091.1| - 0.016 15.1 0.2 0.02 14.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DivIC PF04977.10 gi|156937295|ref|YP_001435091.1| - 0.02 14.3 0.3 0.025 14.0 0.2 1.2 1 0 0 1 1 1 0 Septum formation initiator DUF3818 PF12825.2 gi|156937295|ref|YP_001435091.1| - 0.024 13.3 0.7 0.023 13.3 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) PspA_IM30 PF04012.7 gi|156937295|ref|YP_001435091.1| - 0.024 13.9 1.2 0.029 13.7 0.9 1.1 1 0 0 1 1 1 0 PspA/IM30 family Fib_alpha PF08702.5 gi|156937295|ref|YP_001435091.1| - 0.026 14.6 0.5 0.029 14.4 0.4 1.0 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.15 gi|156937295|ref|YP_001435091.1| - 0.03 14.1 0.6 0.035 13.8 0.4 1.1 1 0 0 1 1 1 0 Prefoldin subunit Spectrin PF00435.16 gi|156937295|ref|YP_001435091.1| - 0.03 14.5 0.1 0.032 14.4 0.1 1.1 1 0 0 1 1 1 0 Spectrin repeat TBPIP PF07106.8 gi|156937295|ref|YP_001435091.1| - 0.032 13.7 0.2 0.038 13.5 0.2 1.0 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) LPP PF04728.8 gi|156937295|ref|YP_001435091.1| - 0.038 13.7 0.6 0.055 13.2 0.4 1.2 1 0 0 1 1 1 0 Lipoprotein leucine-zipper EMP24_GP25L PF01105.19 gi|156937295|ref|YP_001435091.1| - 0.039 13.6 0.2 0.043 13.5 0.1 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DASH_Hsk3 PF08227.6 gi|156937295|ref|YP_001435091.1| - 0.041 14.0 2.6 0.19 11.9 0.1 2.1 1 1 1 2 2 2 0 DASH complex subunit Hsk3 like HALZ PF02183.13 gi|156937295|ref|YP_001435091.1| - 0.054 13.2 0.4 0.075 12.7 0.3 1.2 1 0 0 1 1 1 0 Homeobox associated leucine zipper Adeno_PIX PF03955.9 gi|156937295|ref|YP_001435091.1| - 0.06 13.8 1.0 0.074 13.5 0.7 1.2 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) CENP-F_leu_zip PF10473.4 gi|156937295|ref|YP_001435091.1| - 0.064 13.1 0.5 0.081 12.7 0.3 1.1 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin PF02996.12 gi|156937295|ref|YP_001435091.1| - 0.082 12.5 1.2 0.1 12.2 0.9 1.1 1 0 0 1 1 1 0 Prefoldin subunit Med9 PF07544.8 gi|156937295|ref|YP_001435091.1| - 0.086 12.5 0.1 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF4446 PF14584.1 gi|156937295|ref|YP_001435091.1| - 0.12 12.2 1.1 0.16 11.7 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2985 PF11204.3 gi|156937295|ref|YP_001435091.1| - 0.15 11.8 0.4 0.17 11.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2985) FlaC_arch PF05377.6 gi|156937295|ref|YP_001435091.1| - 0.15 11.9 1.4 0.3 11.0 1.0 1.6 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF2232 PF09991.4 gi|156937295|ref|YP_001435091.1| - 0.16 10.9 2.8 0.18 10.7 2.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) bZIP_2 PF07716.10 gi|156937295|ref|YP_001435091.1| - 1 9.2 3.7 1.9 8.3 2.6 1.5 1 1 0 1 1 1 0 Basic region leucine zipper SlyX PF04102.7 gi|156937295|ref|YP_001435091.1| - 1.1 9.7 3.5 1.9 8.9 2.4 1.4 1 1 0 1 1 1 0 SlyX HycI PF01750.13 gi|156937298|ref|YP_001435094.1| - 0.031 13.8 0.1 0.06 12.9 0.0 1.7 1 1 0 1 1 1 0 Hydrogenase maturation protease DUF211 PF02680.9 gi|156937299|ref|YP_001435095.1| - 1.9e-23 82.0 4.5 2.2e-23 81.8 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 ALS_ss_C PF10369.4 gi|156937299|ref|YP_001435095.1| - 0.13 11.9 1.8 0.32 10.7 0.4 1.9 2 0 0 2 2 2 0 Small subunit of acetolactate synthase ATP_bind_3 PF01171.15 gi|156937300|ref|YP_001435096.1| - 4.5e-11 42.5 0.0 8e-11 41.7 0.0 1.5 1 1 0 1 1 1 1 PP-loop family HTH_5 PF01022.15 gi|156937300|ref|YP_001435096.1| - 0.0016 18.0 0.0 0.0045 16.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Asn_synthase PF00733.16 gi|156937300|ref|YP_001435096.1| - 0.0018 17.8 0.0 0.0029 17.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase DZR PF12773.2 gi|156937300|ref|YP_001435096.1| - 0.0026 17.5 0.2 0.0026 17.5 0.1 2.8 3 0 0 3 3 3 1 Double zinc ribbon PAPS_reduct PF01507.14 gi|156937300|ref|YP_001435096.1| - 0.0066 16.2 0.0 0.0097 15.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|156937300|ref|YP_001435096.1| - 0.0075 15.1 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|156937300|ref|YP_001435096.1| - 0.015 14.6 0.0 0.27 10.5 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC RecR PF02132.10 gi|156937300|ref|YP_001435096.1| - 0.056 12.8 5.1 0.25 10.8 0.2 3.1 3 0 0 3 3 3 0 RecR protein tRNA_Me_trans PF03054.11 gi|156937300|ref|YP_001435096.1| - 0.09 11.3 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase HTH_10 PF04967.7 gi|156937300|ref|YP_001435096.1| - 0.13 11.8 0.0 4.5 6.9 0.0 2.9 3 0 0 3 3 3 0 HTH DNA binding domain CYTH PF01928.16 gi|156937301|ref|YP_001435097.1| - 3.8e-31 108.2 1.5 4.2e-31 108.0 1.0 1.0 1 0 0 1 1 1 1 CYTH domain DUF1610 PF07754.6 gi|156937302|ref|YP_001435098.1| - 6.9e-12 45.2 19.8 3.5e-07 30.1 2.1 2.9 2 2 0 2 2 2 2 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|156937302|ref|YP_001435098.1| - 0.00045 19.8 10.4 0.0045 16.6 0.4 2.4 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|156937302|ref|YP_001435098.1| - 0.00078 19.2 11.7 0.31 10.8 8.2 2.8 1 1 1 2 2 2 2 Double zinc ribbon PolC_DP2 PF03833.8 gi|156937302|ref|YP_001435098.1| - 0.00078 17.2 3.9 0.00082 17.1 2.7 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.1 gi|156937302|ref|YP_001435098.1| - 0.00081 18.8 17.5 0.19 11.2 0.1 4.1 3 1 0 3 3 3 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156937302|ref|YP_001435098.1| - 0.0015 17.7 20.4 0.15 11.2 0.7 4.1 2 2 0 2 2 2 1 zinc-ribbon domain DUF2296 PF10058.4 gi|156937302|ref|YP_001435098.1| - 0.01 15.5 16.1 0.22 11.2 1.4 3.8 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|156937302|ref|YP_001435098.1| - 0.027 14.4 16.6 5.4 7.0 0.1 4.0 3 1 1 4 4 4 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|156937302|ref|YP_001435098.1| - 0.039 13.5 16.9 0.14 11.7 0.1 3.9 3 1 1 4 4 4 0 zinc-ribbon domain IBR PF01485.16 gi|156937302|ref|YP_001435098.1| - 0.043 13.6 7.1 0.35 10.7 3.7 2.2 1 1 1 2 2 2 0 IBR domain zinc_ribbon_4 PF13717.1 gi|156937302|ref|YP_001435098.1| - 0.048 13.3 16.9 0.21 11.3 0.1 4.0 3 1 1 4 4 4 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|156937302|ref|YP_001435098.1| - 0.052 13.5 21.7 0.83 9.7 0.4 4.0 2 1 2 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin PF00301.15 gi|156937302|ref|YP_001435098.1| - 0.057 13.2 17.4 2.3 8.1 1.3 3.8 2 2 1 3 3 3 0 Rubredoxin C1_1 PF00130.17 gi|156937302|ref|YP_001435098.1| - 0.068 12.9 6.6 0.095 12.4 0.4 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF35_N PF12172.3 gi|156937302|ref|YP_001435098.1| - 0.072 13.0 17.2 2.2 8.2 0.0 3.8 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-HIT PF04438.11 gi|156937302|ref|YP_001435098.1| - 0.092 12.4 18.6 8.5 6.1 0.0 3.8 3 1 0 3 3 3 0 HIT zinc finger UPF0547 PF10571.4 gi|156937302|ref|YP_001435098.1| - 0.1 12.2 21.4 0.42 10.3 0.4 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-MYND PF01753.13 gi|156937302|ref|YP_001435098.1| - 0.11 12.3 12.2 0.47 10.3 0.4 2.2 2 0 0 2 2 2 0 MYND finger TF_Zn_Ribbon PF08271.7 gi|156937302|ref|YP_001435098.1| - 0.11 11.8 17.6 0.13 11.5 0.1 4.0 4 0 0 4 4 4 0 TFIIB zinc-binding Mu-like_Com PF10122.4 gi|156937302|ref|YP_001435098.1| - 0.14 11.2 0.3 0.14 11.2 0.2 3.0 2 1 1 3 3 3 0 Mu-like prophage protein Com zf-Mss51 PF13824.1 gi|156937302|ref|YP_001435098.1| - 0.14 12.0 13.3 1.1 9.1 2.5 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.11 gi|156937302|ref|YP_001435098.1| - 0.22 11.2 0.2 0.22 11.2 0.1 2.9 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Tnp_zf-ribbon_2 PF13842.1 gi|156937302|ref|YP_001435098.1| - 0.32 11.4 12.0 6.5 7.2 3.0 3.0 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C2H2 PF00096.21 gi|156937302|ref|YP_001435098.1| - 0.34 11.3 15.0 8.5 6.9 0.1 4.0 4 0 0 4 4 4 0 Zinc finger, C2H2 type zf-RING_5 PF14634.1 gi|156937302|ref|YP_001435098.1| - 0.34 10.6 10.3 0.84 9.4 7.2 1.9 1 1 0 1 1 1 0 zinc-RING finger domain zf-B_box PF00643.19 gi|156937302|ref|YP_001435098.1| - 0.48 10.3 9.4 4.7 7.2 0.4 2.5 1 1 1 2 2 2 0 B-box zinc finger DUF2321 PF10083.4 gi|156937302|ref|YP_001435098.1| - 0.7 9.3 4.6 1 8.8 2.4 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Ribosomal_L37ae PF01780.14 gi|156937302|ref|YP_001435098.1| - 0.83 9.5 8.4 3 7.7 2.3 2.9 1 1 2 3 3 3 0 Ribosomal L37ae protein family Mut7-C PF01927.11 gi|156937302|ref|YP_001435098.1| - 1 9.3 7.0 0.075 13.0 1.3 1.6 1 1 1 2 2 2 0 Mut7-C RNAse domain zf-C2H2_4 PF13894.1 gi|156937302|ref|YP_001435098.1| - 1.1 9.7 15.9 4.7 7.7 0.4 3.9 4 0 0 4 4 4 0 C2H2-type zinc finger zf-C2HC5 PF06221.8 gi|156937302|ref|YP_001435098.1| - 1.2 8.9 9.5 19 5.0 6.6 2.3 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type C1_4 PF07975.7 gi|156937302|ref|YP_001435098.1| - 1.2 9.1 9.1 3.3 7.7 0.7 2.9 1 1 2 3 3 3 0 TFIIH C1-like domain HypA PF01155.14 gi|156937302|ref|YP_001435098.1| - 1.2 8.8 9.4 0.47 10.1 0.2 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Desulfoferrod_N PF06397.7 gi|156937302|ref|YP_001435098.1| - 1.4 8.3 10.7 7.6 6.0 0.3 3.5 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|156937302|ref|YP_001435098.1| - 1.4 9.3 18.7 4.1 7.8 1.2 3.9 3 1 1 4 4 4 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.7 gi|156937302|ref|YP_001435098.1| - 1.5 8.7 13.4 16 5.3 0.2 4.0 3 1 1 4 4 4 0 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|156937302|ref|YP_001435098.1| - 1.9 8.3 10.7 0.36 10.6 0.6 2.7 1 1 2 3 3 3 0 RNHCP domain NinF PF05810.7 gi|156937302|ref|YP_001435098.1| - 1.9 8.3 4.5 2.1 8.2 1.5 2.1 1 1 1 2 2 2 0 NinF protein C1_3 PF07649.7 gi|156937302|ref|YP_001435098.1| - 2.4 8.2 11.2 2.2 8.3 1.5 2.8 2 2 0 2 2 2 0 C1-like domain zf-AN1 PF01428.11 gi|156937302|ref|YP_001435098.1| - 2.8 7.8 13.6 6.7 6.6 1.6 3.0 2 1 1 3 3 3 0 AN1-like Zinc finger DNA_RNApol_7kD PF03604.8 gi|156937302|ref|YP_001435098.1| - 3 7.4 16.3 1.1 8.7 1.8 3.2 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF164 PF02591.10 gi|156937302|ref|YP_001435098.1| - 3.7 7.4 15.9 9.8 6.0 0.1 3.9 2 1 2 4 4 4 0 Putative zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|156937302|ref|YP_001435098.1| - 4 7.0 11.2 24 4.5 0.2 3.9 3 1 0 4 4 4 0 A2L zinc ribbon domain Sgf11 PF08209.6 gi|156937302|ref|YP_001435098.1| - 4.3 6.7 18.9 0.81 9.0 0.5 4.0 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS1595 PF12760.2 gi|156937302|ref|YP_001435098.1| - 5.3 6.9 25.2 44 3.9 0.4 3.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|156937302|ref|YP_001435098.1| - 5.3 6.8 14.5 17 5.2 0.1 3.1 2 1 0 2 2 2 0 Nudix N-terminal zf-CHY PF05495.7 gi|156937302|ref|YP_001435098.1| - 6 7.0 8.3 5.6 7.1 0.2 2.4 1 1 1 2 2 2 0 CHY zinc finger DUF1272 PF06906.6 gi|156937302|ref|YP_001435098.1| - 6.8 6.6 12.0 6.4 6.7 1.5 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-TFIIB PF13453.1 gi|156937302|ref|YP_001435098.1| - 7 5.9 18.5 17 4.7 6.5 3.4 1 1 0 2 2 2 0 Transcription factor zinc-finger DUF329 PF03884.9 gi|156937302|ref|YP_001435098.1| - 7.1 6.2 17.5 39 3.9 4.1 3.9 1 1 2 3 3 3 0 Domain of unknown function (DUF329) zf-RanBP PF00641.13 gi|156937302|ref|YP_001435098.1| - 8.1 5.6 11.3 6.4 5.9 1.5 3.6 3 1 0 3 3 3 0 Zn-finger in Ran binding protein and others zf-trcl PF13451.1 gi|156937302|ref|YP_001435098.1| - 9.8 5.9 19.2 11 5.7 2.4 3.9 2 1 2 4 4 4 0 Probable zinc-binding domain EF1_GNE PF00736.14 gi|156937303|ref|YP_001435099.1| - 6.1e-22 77.1 1.2 6.9e-22 76.9 0.8 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|156937303|ref|YP_001435099.1| - 0.12 12.4 2.0 0.93 9.6 0.1 2.2 2 0 0 2 2 2 0 Heavy-metal-associated domain Lactamase_B PF00753.22 gi|156937305|ref|YP_001435101.1| - 2.9e-07 30.3 0.3 0.02 14.5 0.0 2.8 2 1 1 3 3 3 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|156937305|ref|YP_001435101.1| - 3.5e-06 26.6 0.0 4.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|156937305|ref|YP_001435101.1| - 0.035 13.8 0.1 0.11 12.2 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain GlutR_N PF05201.10 gi|156937306|ref|YP_001435102.1| - 2.5e-43 147.2 0.0 6.2e-43 146.0 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|156937306|ref|YP_001435102.1| - 8.7e-25 87.3 0.5 8.7e-25 87.3 0.3 2.1 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|156937306|ref|YP_001435102.1| - 3.2e-19 68.7 3.8 6.8e-19 67.6 2.6 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|156937306|ref|YP_001435102.1| - 1.9e-08 33.6 0.1 3.6e-08 32.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|156937306|ref|YP_001435102.1| - 5.5e-07 29.5 2.0 7.5e-07 29.1 0.2 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|156937306|ref|YP_001435102.1| - 2e-06 27.9 2.3 2e-06 27.9 1.6 2.0 2 0 0 2 2 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|156937306|ref|YP_001435102.1| - 5.6e-06 26.7 2.0 2.1e-05 24.8 1.4 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|156937306|ref|YP_001435102.1| - 0.00017 20.9 0.5 0.00036 19.9 0.3 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|156937306|ref|YP_001435102.1| - 0.00018 21.9 0.6 0.00068 20.1 0.2 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold FAD_binding_2 PF00890.19 gi|156937306|ref|YP_001435102.1| - 0.00031 19.7 4.7 0.00043 19.2 2.8 1.6 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|156937306|ref|YP_001435102.1| - 0.00035 19.5 0.9 0.00069 18.5 0.6 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A THF_DHG_CYH_C PF02882.14 gi|156937306|ref|YP_001435102.1| - 0.00036 19.6 1.2 0.24 10.4 0.1 2.5 2 0 0 2 2 2 2 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.9 gi|156937306|ref|YP_001435102.1| - 0.00062 19.6 4.3 0.002 18.0 2.1 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|156937306|ref|YP_001435102.1| - 0.0014 17.5 4.5 0.005 15.7 1.5 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|156937306|ref|YP_001435102.1| - 0.0018 17.3 0.7 0.0032 16.5 0.5 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase FAD_oxidored PF12831.2 gi|156937306|ref|YP_001435102.1| - 0.002 17.2 3.0 0.002 17.2 2.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|156937306|ref|YP_001435102.1| - 0.0023 18.1 2.1 0.0038 17.4 0.5 2.1 2 0 0 2 2 1 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|156937306|ref|YP_001435102.1| - 0.0026 17.6 0.3 0.006 16.4 0.2 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|156937306|ref|YP_001435102.1| - 0.0044 16.6 0.9 0.0044 16.6 0.6 2.7 3 1 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|156937306|ref|YP_001435102.1| - 0.012 15.2 0.7 0.025 14.1 0.5 1.5 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HrcA PF01628.16 gi|156937306|ref|YP_001435102.1| - 0.015 14.8 0.7 0.03 13.9 0.5 1.4 1 0 0 1 1 1 0 HrcA protein C terminal domain TrkA_N PF02254.13 gi|156937306|ref|YP_001435102.1| - 0.017 15.1 1.3 0.077 13.0 0.9 2.2 1 1 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|156937306|ref|YP_001435102.1| - 0.023 14.0 0.5 0.11 11.8 0.3 2.3 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|156937306|ref|YP_001435102.1| - 0.026 13.5 4.3 0.031 13.3 0.3 2.7 3 0 0 3 3 3 0 Thi4 family LVIVD PF08309.6 gi|156937306|ref|YP_001435102.1| - 0.028 13.4 0.1 0.058 12.3 0.1 1.4 1 0 0 1 1 1 0 LVIVD repeat NAD_binding_8 PF13450.1 gi|156937306|ref|YP_001435102.1| - 0.036 14.1 1.0 0.064 13.2 0.2 1.9 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|156937306|ref|YP_001435102.1| - 0.037 14.4 2.2 0.081 13.3 0.1 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|156937306|ref|YP_001435102.1| - 0.056 12.4 0.4 0.1 11.5 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain FMO-like PF00743.14 gi|156937306|ref|YP_001435102.1| - 0.077 11.1 0.7 0.16 10.1 0.0 1.7 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like Pyr_redox_3 PF13738.1 gi|156937306|ref|YP_001435102.1| - 0.23 11.4 2.2 0.44 10.5 1.0 1.8 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|156937306|ref|YP_001435102.1| - 1.6 8.3 6.5 1.8e+02 1.5 4.5 2.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.9 gi|156937306|ref|YP_001435102.1| - 1.9 6.8 10.5 0.032 12.6 1.1 2.4 3 0 0 3 3 3 0 HI0933-like protein Gp-FAR-1 PF05823.7 gi|156937308|ref|YP_001435104.1| - 0.0041 17.0 0.0 0.007 16.3 0.0 1.4 1 0 0 1 1 1 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Topoisom_bac PF01131.15 gi|156937309|ref|YP_001435105.1| - 1.6e-86 290.6 0.1 2.6e-84 283.4 0.0 2.4 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|156937309|ref|YP_001435105.1| - 3.6e-22 78.2 0.1 1.5e-21 76.2 0.0 2.2 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.24 gi|156937309|ref|YP_001435105.1| - 4.2e-12 45.8 0.0 1.5e-11 44.0 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|156937309|ref|YP_001435105.1| - 1.5e-08 34.3 0.0 0.0027 17.5 0.0 3.4 3 0 0 3 3 3 2 Helicase conserved C-terminal domain AAA_23 PF13476.1 gi|156937309|ref|YP_001435105.1| - 0.00013 22.3 5.5 0.00037 20.8 0.5 3.6 3 1 0 3 3 3 1 AAA domain UPF0547 PF10571.4 gi|156937309|ref|YP_001435105.1| - 0.0002 20.9 5.5 0.036 13.7 0.1 3.6 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|156937309|ref|YP_001435105.1| - 0.0048 16.5 1.0 0.0048 16.5 0.7 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 ResIII PF04851.10 gi|156937309|ref|YP_001435105.1| - 0.012 15.4 0.0 0.04 13.7 0.0 1.9 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit zf-ribbon_3 PF13248.1 gi|156937309|ref|YP_001435105.1| - 0.015 14.5 7.4 0.11 11.7 2.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|156937309|ref|YP_001435105.1| - 0.015 15.0 3.2 0.092 12.5 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon YhfH PF14149.1 gi|156937309|ref|YP_001435105.1| - 0.086 12.6 4.5 1.3 8.8 0.1 3.4 3 0 0 3 3 3 0 YhfH-like protein SecA_DEAD PF07517.9 gi|156937309|ref|YP_001435105.1| - 0.13 11.5 1.0 1.1 8.5 0.7 2.4 1 1 0 1 1 1 0 SecA DEAD-like domain RasGEF PF00617.14 gi|156937309|ref|YP_001435105.1| - 0.18 11.5 0.6 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 RasGEF domain zinc_ribbon_2 PF13240.1 gi|156937309|ref|YP_001435105.1| - 0.26 10.8 13.4 0.094 12.2 2.5 2.4 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156937309|ref|YP_001435105.1| - 0.27 10.9 5.0 0.18 11.4 0.2 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|156937309|ref|YP_001435105.1| - 0.29 10.8 3.7 11 5.8 0.1 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF87 PF01935.12 gi|156937309|ref|YP_001435105.1| - 0.7 9.6 9.1 0.17 11.6 0.2 3.3 4 0 0 4 4 3 0 Domain of unknown function DUF87 zf-RING_3 PF14369.1 gi|156937309|ref|YP_001435105.1| - 5.2 7.1 5.4 9.4 6.3 0.7 2.6 2 0 0 2 2 2 0 zinc-finger DEAD PF00270.24 gi|156937310|ref|YP_001435106.1| - 8.4e-22 77.4 0.1 1.7e-20 73.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|156937310|ref|YP_001435106.1| - 1.2e-12 47.5 0.0 8.4e-12 44.7 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|156937310|ref|YP_001435106.1| - 0.00063 19.6 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|156937310|ref|YP_001435106.1| - 0.059 12.7 0.1 0.97 8.8 0.0 2.6 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|156937310|ref|YP_001435106.1| - 0.085 12.6 0.6 0.32 10.7 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain Helicase_C_2 PF13307.1 gi|156937310|ref|YP_001435106.1| - 0.15 12.0 0.0 0.41 10.5 0.0 1.7 1 0 0 1 1 1 0 Helicase C-terminal domain IF-2B PF01008.12 gi|156937312|ref|YP_001435108.1| - 6.6e-96 320.6 0.0 7.8e-96 320.3 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Form-deh_trans PF09163.6 gi|156937313|ref|YP_001435109.1| - 0.046 13.2 0.3 0.088 12.3 0.2 1.4 1 0 0 1 1 1 0 Formate dehydrogenase N, transmembrane Peptidase_M20 PF01546.23 gi|156937314|ref|YP_001435110.1| - 2.6e-29 102.0 0.0 4.4e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|156937314|ref|YP_001435110.1| - 1e-16 60.6 0.0 1.9e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain PqqD PF05402.7 gi|156937315|ref|YP_001435111.1| - 0.039 13.9 0.0 0.044 13.8 0.0 1.2 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Jag_N PF14804.1 gi|156937315|ref|YP_001435111.1| - 0.076 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Jag N-terminus DUF429 PF04250.8 gi|156937316|ref|YP_001435112.1| - 2.6e-25 88.8 1.5 3.2e-19 69.0 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF429) Metallophos PF00149.23 gi|156937318|ref|YP_001435114.1| - 6.8e-17 61.5 0.0 1.1e-16 60.8 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|156937318|ref|YP_001435114.1| - 1e-15 57.9 0.0 1.7e-15 57.1 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|156937318|ref|YP_001435114.1| - 9.6e-14 51.1 0.0 5.9e-09 35.4 0.0 3.0 3 0 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Asp_Glu_race PF01177.17 gi|156937318|ref|YP_001435114.1| - 0.052 13.4 0.0 0.1 12.5 0.0 1.5 2 0 0 2 2 2 0 Asp/Glu/Hydantoin racemase RNA_lig_T4_1 PF09511.5 gi|156937319|ref|YP_001435115.1| - 3.4e-10 39.7 0.0 4.9e-08 32.7 0.0 2.2 2 0 0 2 2 2 2 RNA ligase NrfD PF03916.9 gi|156937321|ref|YP_001435117.1| - 2e-25 89.8 31.5 1.3e-24 87.2 21.8 2.2 1 1 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|156937322|ref|YP_001435118.1| - 3.1e-19 68.6 13.4 1.6e-14 53.6 4.6 3.7 2 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156937322|ref|YP_001435118.1| - 7.9e-14 51.7 28.5 3.3e-09 36.9 5.3 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937322|ref|YP_001435118.1| - 1e-12 47.1 32.8 7.9e-06 25.4 2.2 4.8 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156937322|ref|YP_001435118.1| - 2.3e-11 43.7 33.2 9.4e-09 35.4 4.6 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156937322|ref|YP_001435118.1| - 7.9e-11 41.0 32.1 4.7e-07 29.1 1.8 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156937322|ref|YP_001435118.1| - 4.5e-09 35.9 28.5 5.6e-06 26.0 5.5 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937322|ref|YP_001435118.1| - 2.2e-08 33.5 39.5 5.6e-05 22.8 2.5 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156937322|ref|YP_001435118.1| - 2.1e-07 30.6 31.8 0.00093 19.3 2.2 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156937322|ref|YP_001435118.1| - 1.1e-05 25.6 32.0 0.0005 20.3 3.2 4.6 3 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156937322|ref|YP_001435118.1| - 1.5e-05 24.9 30.1 0.0041 17.1 5.8 3.7 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|156937322|ref|YP_001435118.1| - 9.7e-05 22.6 40.7 0.013 15.9 3.5 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156937322|ref|YP_001435118.1| - 0.0013 19.4 6.2 0.0013 19.4 4.3 3.8 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|156937322|ref|YP_001435118.1| - 0.0042 16.9 32.5 0.58 10.0 8.5 4.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156937322|ref|YP_001435118.1| - 0.013 16.0 1.2 0.013 16.0 0.8 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain DUF4467 PF14729.1 gi|156937322|ref|YP_001435118.1| - 0.034 14.4 0.2 0.063 13.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function with cystatin-like fold (DUF4467) DisA-linker PF10635.4 gi|156937322|ref|YP_001435118.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 DisA bacterial checkpoint controller linker region Fer4_18 PF13746.1 gi|156937322|ref|YP_001435118.1| - 0.69 10.3 39.0 0.11 12.8 2.1 4.9 3 2 2 5 5 5 0 4Fe-4S dicluster domain Cytochrom_c3_2 PF14537.1 gi|156937323|ref|YP_001435119.1| - 6e-06 26.5 3.4 0.00044 20.5 0.8 2.5 2 1 0 2 2 2 1 Cytochrome c3 Cytochrome_C7 PF14522.1 gi|156937323|ref|YP_001435119.1| - 9.3e-06 25.1 7.3 0.00048 19.6 2.5 2.8 2 1 0 2 2 2 2 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|156937323|ref|YP_001435119.1| - 2e-05 24.6 7.1 0.00071 19.6 1.9 2.8 1 1 1 2 2 2 2 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.5 gi|156937323|ref|YP_001435119.1| - 0.0069 15.8 19.4 0.36 10.3 0.4 4.0 3 1 0 3 3 3 2 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrome_CBB3 PF13442.1 gi|156937323|ref|YP_001435119.1| - 0.13 12.4 6.4 44 4.3 0.3 4.1 3 1 1 4 4 4 0 Cytochrome C oxidase, cbb3-type, subunit III Ost4 PF10215.4 gi|156937323|ref|YP_001435119.1| - 0.23 10.9 1.7 0.44 10.0 1.2 1.4 1 0 0 1 1 1 0 Oligosaccaryltransferase Cytochrom_C552 PF02335.10 gi|156937323|ref|YP_001435119.1| - 1.3 7.6 10.4 0.046 12.4 2.1 2.0 1 1 1 2 2 2 0 Cytochrome c552 Cytochrom_NNT PF03264.9 gi|156937323|ref|YP_001435119.1| - 2.3 7.6 10.8 3.1 7.2 1.3 3.1 2 1 1 3 3 3 0 NapC/NirT cytochrome c family, N-terminal region Cytochrom_CIII PF02085.11 gi|156937323|ref|YP_001435119.1| - 3.7 7.6 14.5 0.74 9.9 2.8 3.3 1 1 2 3 3 3 0 Class III cytochrome C family DZR PF12773.2 gi|156937323|ref|YP_001435119.1| - 5.9 6.7 8.2 5.8 6.8 2.0 3.0 2 1 1 3 3 3 0 Double zinc ribbon Chorismate_synt PF01264.16 gi|156937324|ref|YP_001435120.1| - 1.8e-133 444.3 0.0 2e-133 444.1 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase RTC PF01137.16 gi|156937325|ref|YP_001435121.1| - 8.5e-83 276.6 0.0 1.1e-82 276.2 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|156937325|ref|YP_001435121.1| - 5e-32 109.9 0.0 8.5e-32 109.2 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain SDH_sah PF01972.11 gi|156937326|ref|YP_001435122.1| - 3.1e-107 357.6 0.4 3.8e-107 357.3 0.3 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|156937326|ref|YP_001435122.1| - 1.5e-06 28.0 0.1 5.1e-06 26.2 0.0 1.9 2 1 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|156937326|ref|YP_001435122.1| - 0.0011 18.7 0.0 0.0022 17.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase family S49 Dak1_2 PF13684.1 gi|156937326|ref|YP_001435122.1| - 0.0089 14.9 1.7 0.41 9.5 0.1 2.1 2 0 0 2 2 2 2 Dihydroxyacetone kinase family Peptidase_S8 PF00082.17 gi|156937327|ref|YP_001435123.1| - 9.3e-19 67.6 0.0 1.4e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Subtilase family DUF4337 PF14235.1 gi|156937328|ref|YP_001435124.1| - 0.56 10.0 3.0 2.1 8.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) NAD_kinase PF01513.16 gi|156937329|ref|YP_001435125.1| - 2.6e-34 118.3 0.1 8.1e-34 116.6 0.0 1.6 1 1 1 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|156937329|ref|YP_001435125.1| - 0.076 12.4 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain CbiX PF01903.12 gi|156937330|ref|YP_001435126.1| - 1.4e-17 63.7 0.1 1.6e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|156937330|ref|YP_001435126.1| - 7.9e-07 28.4 0.2 7.9e-07 28.4 0.1 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|156937330|ref|YP_001435126.1| - 0.00013 21.0 0.0 0.00016 20.7 0.0 1.2 1 0 0 1 1 1 1 Ferrochelatase DUF371 PF04027.8 gi|156937331|ref|YP_001435127.1| - 4.9e-19 68.2 0.0 7.3e-10 38.6 0.0 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF371) CitMHS PF03600.11 gi|156937332|ref|YP_001435128.1| - 5.2e-36 123.9 32.1 1.8e-24 86.0 6.8 2.4 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|156937332|ref|YP_001435128.1| - 5.5e-10 38.7 33.4 5.3e-08 32.2 8.1 2.4 2 1 0 2 2 2 2 Arsenical pump membrane protein GHMP_kinases_N PF00288.21 gi|156937333|ref|YP_001435129.1| - 1.5e-10 41.0 0.7 1.5e-10 41.0 0.5 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|156937333|ref|YP_001435129.1| - 2.6e-08 33.9 0.4 5.1e-07 29.7 0.1 2.5 2 1 0 2 2 2 1 GHMP kinases C terminal PQQ_2 PF13360.1 gi|156937334|ref|YP_001435130.1| - 2e-06 27.4 0.3 0.0063 16.0 0.0 3.0 2 1 1 3 3 3 2 PQQ-like domain PQQ_3 PF13570.1 gi|156937334|ref|YP_001435130.1| - 7.8e-06 25.9 0.8 0.54 10.5 0.0 4.5 3 1 0 3 3 3 1 PQQ-like domain T4SS PF07996.6 gi|156937334|ref|YP_001435130.1| - 0.0011 18.8 0.2 0.0032 17.3 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion system proteins ATP-synt_E PF05680.7 gi|156937334|ref|YP_001435130.1| - 0.0016 18.3 7.3 0.003 17.4 0.3 3.2 4 0 0 4 4 4 1 ATP synthase E chain WD40 PF00400.27 gi|156937334|ref|YP_001435130.1| - 0.0086 15.9 0.2 4 7.4 0.0 3.0 3 0 0 3 3 3 1 WD domain, G-beta repeat DUF2730 PF10805.3 gi|156937334|ref|YP_001435130.1| - 0.066 12.9 4.4 0.13 12.0 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) Amidohydro_5 PF13594.1 gi|156937334|ref|YP_001435130.1| - 0.11 12.3 0.0 0.34 10.7 0.0 1.9 1 0 0 1 1 1 0 Amidohydrolase GPAT_N PF14829.1 gi|156937334|ref|YP_001435130.1| - 0.21 11.3 1.3 2.4 7.9 0.0 3.0 3 0 0 3 3 3 0 Glycerol-3-phosphate acyltransferase N-terminal DivIC PF04977.10 gi|156937334|ref|YP_001435130.1| - 0.28 10.6 2.9 1.3 8.5 0.5 2.7 2 0 0 2 2 2 0 Septum formation initiator Lip_prot_lig_C PF10437.4 gi|156937334|ref|YP_001435130.1| - 0.64 9.7 4.1 9.6 5.9 0.1 3.0 3 0 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus DUF4140 PF13600.1 gi|156937334|ref|YP_001435130.1| - 0.79 10.1 6.6 5.2 7.5 0.2 3.3 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) Complex1_49kDa PF00346.14 gi|156937335|ref|YP_001435131.1| - 3.5e-55 186.9 0.0 9.3e-44 149.4 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|156937335|ref|YP_001435131.1| - 9e-34 115.8 0.0 2e-33 114.7 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Methyltrans_SAM PF10672.4 gi|156937335|ref|YP_001435131.1| - 0.086 11.6 0.0 0.16 10.7 0.0 1.4 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase NiFeSe_Hases PF00374.14 gi|156937335|ref|YP_001435131.1| - 0.15 10.7 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|156937336|ref|YP_001435132.1| - 7.5e-18 64.4 0.0 1.1e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.14 gi|156937337|ref|YP_001435133.1| - 2e-08 33.9 0.0 2.6e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YhhN PF07947.9 gi|156937337|ref|YP_001435133.1| - 0.0087 15.4 0.2 0.0087 15.4 0.2 1.6 2 0 0 2 2 2 1 YhhN-like protein Oxidored_q1 PF00361.15 gi|156937338|ref|YP_001435134.1| - 1.3e-52 178.7 23.4 1.3e-52 178.7 16.2 2.3 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|156937339|ref|YP_001435135.1| - 3.6e-66 223.1 18.0 8.2e-66 222.0 12.5 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|156937339|ref|YP_001435135.1| - 2.7e-08 33.2 0.8 2.7e-08 33.2 0.6 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CTP-dep_RFKase PF01982.11 gi|156937340|ref|YP_001435136.1| - 2.5e-44 149.8 0.0 3.2e-44 149.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 Antitoxin-MazE PF04014.13 gi|156937340|ref|YP_001435136.1| - 0.0013 18.4 0.1 0.021 14.5 0.1 2.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MerR_2 PF13591.1 gi|156937340|ref|YP_001435136.1| - 0.017 14.7 0.0 0.032 13.8 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein Phage_integrase PF00589.17 gi|156937341|ref|YP_001435137.1| - 1.7e-34 118.9 0.0 2.7e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|156937341|ref|YP_001435137.1| - 6.1e-08 32.8 0.0 0.0001 22.5 0.0 2.4 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|156937341|ref|YP_001435137.1| - 1.5e-07 31.4 0.8 5.4e-07 29.6 0.1 2.2 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|156937341|ref|YP_001435137.1| - 3e-05 23.8 0.0 4.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Integrase DUF3435 PF11917.3 gi|156937341|ref|YP_001435137.1| - 0.067 11.9 0.0 0.099 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Phage_int_SAM_3 PF14659.1 gi|156937341|ref|YP_001435137.1| - 0.15 12.3 0.0 0.33 11.2 0.0 1.5 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain ABC_tran PF00005.22 gi|156937343|ref|YP_001435139.1| - 1.4e-10 41.6 0.0 3.7e-08 33.7 0.0 2.2 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156937343|ref|YP_001435139.1| - 2.3e-09 37.6 0.0 1.1e-05 25.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|156937343|ref|YP_001435139.1| - 5.2e-07 29.8 0.0 7.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|156937343|ref|YP_001435139.1| - 8.3e-07 28.4 0.0 0.00056 19.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|156937343|ref|YP_001435139.1| - 9.5e-05 21.8 0.0 0.00016 21.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|156937343|ref|YP_001435139.1| - 0.00012 21.9 0.0 0.00013 21.8 0.0 1.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|156937343|ref|YP_001435139.1| - 0.00013 21.1 0.0 0.00016 20.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|156937343|ref|YP_001435139.1| - 0.00022 20.8 0.0 0.0018 17.9 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|156937343|ref|YP_001435139.1| - 0.00036 21.3 0.0 0.00094 19.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|156937343|ref|YP_001435139.1| - 0.0055 16.7 0.1 0.0099 15.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|156937343|ref|YP_001435139.1| - 0.0097 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|156937343|ref|YP_001435139.1| - 0.011 15.5 0.0 0.05 13.5 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|156937343|ref|YP_001435139.1| - 0.017 15.3 0.0 0.031 14.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|156937343|ref|YP_001435139.1| - 0.019 14.4 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|156937343|ref|YP_001435139.1| - 0.023 14.5 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|156937343|ref|YP_001435139.1| - 0.026 14.7 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|156937343|ref|YP_001435139.1| - 0.034 14.4 0.0 0.05 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|156937343|ref|YP_001435139.1| - 0.038 13.4 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family Rad17 PF03215.10 gi|156937343|ref|YP_001435139.1| - 0.049 12.2 0.0 0.062 11.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|156937343|ref|YP_001435139.1| - 0.057 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|156937343|ref|YP_001435139.1| - 0.06 13.0 0.0 0.082 12.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_10 PF12846.2 gi|156937343|ref|YP_001435139.1| - 0.077 12.4 0.2 0.12 11.7 0.2 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_15 PF13175.1 gi|156937343|ref|YP_001435139.1| - 0.1 11.6 0.0 11 4.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Pox_A32 PF04665.7 gi|156937343|ref|YP_001435139.1| - 0.11 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein HSDR_N PF04313.9 gi|156937343|ref|YP_001435139.1| - 0.11 12.2 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_18 PF13238.1 gi|156937343|ref|YP_001435139.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 2 0 0 2 2 1 0 AAA domain Guanylate_kin PF00625.16 gi|156937343|ref|YP_001435139.1| - 0.15 11.4 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase UbiD PF01977.11 gi|156937344|ref|YP_001435140.1| - 5e-96 321.6 0.2 6.9e-96 321.1 0.1 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NTP_transf_3 PF12804.2 gi|156937345|ref|YP_001435141.1| - 9.2e-05 22.5 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Acetyltransf_1 PF00583.19 gi|156937346|ref|YP_001435142.1| - 2.6e-18 65.8 0.0 3.6e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|156937346|ref|YP_001435142.1| - 7.1e-10 38.9 0.0 8.8e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|156937346|ref|YP_001435142.1| - 8.6e-10 38.7 0.0 1.5e-09 38.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|156937346|ref|YP_001435142.1| - 3.4e-08 33.4 0.0 9.3e-07 28.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|156937346|ref|YP_001435142.1| - 8e-08 31.9 0.1 1.3e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|156937346|ref|YP_001435142.1| - 8.4e-08 32.2 0.0 1.4e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|156937346|ref|YP_001435142.1| - 9.6e-05 22.3 0.0 0.00047 20.1 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|156937346|ref|YP_001435142.1| - 9.8e-05 22.5 0.0 0.00011 22.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|156937346|ref|YP_001435142.1| - 0.089 12.7 0.1 0.29 11.0 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DFP PF04127.10 gi|156937347|ref|YP_001435143.1| - 1.8e-53 180.8 0.0 4e-53 179.7 0.0 1.5 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|156937347|ref|YP_001435143.1| - 3.6e-22 78.3 0.0 6.6e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein F420_oxidored PF03807.12 gi|156937347|ref|YP_001435143.1| - 0.00016 22.0 0.0 0.00057 20.2 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|156937347|ref|YP_001435143.1| - 0.0023 17.9 0.5 0.0074 16.3 0.0 2.0 3 0 0 3 3 3 1 NADH(P)-binding SBP_bac_11 PF13531.1 gi|156937347|ref|YP_001435143.1| - 0.057 13.0 0.0 0.5 9.9 0.0 2.1 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein NAD_binding_2 PF03446.10 gi|156937347|ref|YP_001435143.1| - 0.092 12.5 0.0 0.43 10.4 0.0 2.1 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase MFS_1 PF07690.11 gi|156937348|ref|YP_001435144.1| - 1.5e-12 46.8 29.1 1.5e-12 46.8 20.2 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily SNARE_assoc PF09335.6 gi|156937348|ref|YP_001435144.1| - 0.0075 16.4 1.6 0.0075 16.4 1.1 4.1 3 1 1 4 4 4 1 SNARE associated Golgi protein DHH PF01368.15 gi|156937350|ref|YP_001435146.1| - 0.011 15.3 0.0 0.069 12.7 0.0 2.2 1 1 0 1 1 1 0 DHH family DUF4336 PF14234.1 gi|156937350|ref|YP_001435146.1| - 0.18 10.9 0.0 0.38 9.8 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4336) MoCF_biosynth PF00994.19 gi|156937352|ref|YP_001435148.1| - 1.4e-31 108.8 0.3 2e-31 108.3 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain RuvA_C PF07499.8 gi|156937352|ref|YP_001435148.1| - 0.16 12.1 0.8 2 8.6 0.0 3.0 3 1 0 3 3 3 0 RuvA, C-terminal domain Thi4 PF01946.12 gi|156937353|ref|YP_001435149.1| - 1.6e-69 233.5 2.6 1.9e-69 233.2 1.8 1.0 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|156937353|ref|YP_001435149.1| - 3e-13 49.4 5.4 1.3e-07 30.8 0.3 3.0 2 1 1 3 3 3 3 FAD binding domain DAO PF01266.19 gi|156937353|ref|YP_001435149.1| - 3e-11 42.8 4.7 1.2e-08 34.2 0.8 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|156937353|ref|YP_001435149.1| - 1.5e-10 40.7 1.6 1.9e-10 40.3 1.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|156937353|ref|YP_001435149.1| - 2e-09 37.3 0.5 4.7e-09 36.1 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|156937353|ref|YP_001435149.1| - 3.5e-07 30.4 0.2 5.8e-07 29.7 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|156937353|ref|YP_001435149.1| - 1.3e-06 27.7 0.5 2.2e-06 26.9 0.4 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|156937353|ref|YP_001435149.1| - 2.2e-06 27.7 3.1 2.8e-06 27.3 0.3 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|156937353|ref|YP_001435149.1| - 4.9e-06 25.2 0.4 7.8e-06 24.6 0.3 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|156937353|ref|YP_001435149.1| - 7.7e-06 25.0 0.4 1.5e-05 24.0 0.3 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|156937353|ref|YP_001435149.1| - 0.00056 19.1 0.1 0.0009 18.4 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|156937353|ref|YP_001435149.1| - 0.0054 15.6 0.2 0.011 14.6 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein ThiF PF00899.16 gi|156937353|ref|YP_001435149.1| - 0.0076 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.15 gi|156937353|ref|YP_001435149.1| - 0.0086 16.1 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.14 gi|156937353|ref|YP_001435149.1| - 0.0089 15.1 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox PF00070.22 gi|156937353|ref|YP_001435149.1| - 0.023 15.0 1.0 0.046 14.1 0.2 1.9 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase WD40 PF00400.27 gi|156937354|ref|YP_001435150.1| - 3.2e-13 49.0 6.0 0.00028 20.6 0.0 5.9 6 0 0 6 6 6 4 WD domain, G-beta repeat PQQ_2 PF13360.1 gi|156937354|ref|YP_001435150.1| - 0.0002 20.8 1.4 0.16 11.3 0.6 3.1 2 1 1 3 3 3 2 PQQ-like domain IKI3 PF04762.7 gi|156937354|ref|YP_001435150.1| - 0.0094 13.8 0.0 0.32 8.7 0.0 2.1 1 1 1 2 2 2 2 IKI3 family DUF3312 PF11768.3 gi|156937354|ref|YP_001435150.1| - 0.01 14.1 0.0 0.02 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3312) eIF2A PF08662.6 gi|156937354|ref|YP_001435150.1| - 0.021 14.5 0.0 0.085 12.5 0.0 1.9 2 1 0 2 2 2 0 Eukaryotic translation initiation factor eIF2A PQQ_3 PF13570.1 gi|156937354|ref|YP_001435150.1| - 0.022 15.0 19.4 0.99 9.7 0.1 6.7 6 1 1 7 7 7 0 PQQ-like domain PRA-CH PF01502.13 gi|156937355|ref|YP_001435151.1| - 8.6e-31 105.4 0.5 1.2e-30 104.9 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase TRI5 PF06330.6 gi|156937355|ref|YP_001435151.1| - 0.06 11.9 0.1 0.068 11.8 0.1 1.1 1 0 0 1 1 1 0 Trichodiene synthase (TRI5) Radical_SAM PF04055.16 gi|156937356|ref|YP_001435152.1| - 6.5e-21 75.2 0.0 2.9e-20 73.1 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|156937356|ref|YP_001435152.1| - 3.3e-08 33.7 0.0 7.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1610 PF07754.6 gi|156937356|ref|YP_001435152.1| - 0.0009 19.3 4.6 0.089 12.9 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Fer4_14 PF13394.1 gi|156937356|ref|YP_001435152.1| - 0.0059 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ISL3 PF14690.1 gi|156937356|ref|YP_001435152.1| - 0.006 16.5 2.5 1.3 9.0 0.0 2.8 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|156937356|ref|YP_001435152.1| - 0.0069 15.8 4.4 0.0069 15.8 3.0 2.5 2 1 1 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156937356|ref|YP_001435152.1| - 0.041 13.5 0.1 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|156937356|ref|YP_001435152.1| - 0.053 13.3 0.3 0.053 13.3 0.2 2.6 3 1 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|156937356|ref|YP_001435152.1| - 0.12 11.8 0.0 0.12 11.8 0.0 3.1 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|156937356|ref|YP_001435152.1| - 0.16 11.3 6.8 2.2 7.6 0.0 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding DUF1272 PF06906.6 gi|156937356|ref|YP_001435152.1| - 1 9.2 6.4 5 7.0 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|156937356|ref|YP_001435152.1| - 1.6 8.0 13.3 0.11 11.6 3.1 3.0 2 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|156937356|ref|YP_001435152.1| - 2.3 8.2 6.3 18 5.3 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|156937356|ref|YP_001435152.1| - 4.8 7.0 11.0 3.4 7.5 0.2 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Usp PF00582.21 gi|156937357|ref|YP_001435153.1| - 9.8e-36 123.0 1.2 1.1e-35 122.8 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.14 gi|156937357|ref|YP_001435153.1| - 0.0002 21.2 0.1 0.02 14.7 0.1 2.2 1 1 0 1 1 1 1 B12 binding domain TA0956 PF11513.3 gi|156937357|ref|YP_001435153.1| - 0.047 13.7 0.0 0.083 12.9 0.0 1.4 1 0 0 1 1 1 0 Thermoplasma acidophilum protein TA0956 CbiA PF01656.18 gi|156937358|ref|YP_001435154.1| - 7.8e-08 31.9 0.0 1.4e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|156937358|ref|YP_001435154.1| - 0.00037 20.4 0.0 0.00085 19.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|156937358|ref|YP_001435154.1| - 0.0059 15.6 0.0 0.0097 14.9 0.0 1.3 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|156937358|ref|YP_001435154.1| - 0.018 14.1 0.0 0.093 11.7 0.0 1.9 2 0 0 2 2 2 0 ATPase MipZ AA_kinase PF00696.23 gi|156937359|ref|YP_001435155.1| - 2.8e-22 79.4 0.0 5e-22 78.6 0.0 1.4 1 1 0 1 1 1 1 Amino acid kinase family Peripla_BP_6 PF13458.1 gi|156937360|ref|YP_001435156.1| - 1.8e-06 27.5 0.0 2.7e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|156937360|ref|YP_001435156.1| - 6.4e-06 25.1 0.0 9.2e-06 24.6 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region B12-binding PF02310.14 gi|156937360|ref|YP_001435156.1| - 0.0044 16.8 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain MoCF_biosynth PF00994.19 gi|156937360|ref|YP_001435156.1| - 0.015 14.7 0.0 0.039 13.3 0.0 1.7 1 0 0 1 1 1 0 Probable molybdopterin binding domain SBP_bac_5 PF00496.17 gi|156937360|ref|YP_001435156.1| - 0.021 13.6 0.0 0.033 13.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle Amidase_3 PF01520.13 gi|156937360|ref|YP_001435156.1| - 0.057 13.1 0.0 0.1 12.3 0.0 1.5 1 1 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase HGTP_anticodon PF03129.15 gi|156937360|ref|YP_001435156.1| - 0.07 13.0 0.2 9.5 6.2 0.0 2.6 2 0 0 2 2 2 0 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|156937361|ref|YP_001435157.1| - 3e-51 173.4 0.0 5.6e-51 172.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|156937361|ref|YP_001435157.1| - 6.3e-22 77.3 0.6 1.7e-21 75.9 0.0 2.0 2 0 0 2 2 2 1 Anticodon binding domain Rad50_zn_hook PF04423.9 gi|156937361|ref|YP_001435157.1| - 0.047 13.1 1.8 0.091 12.2 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.5 gi|156937361|ref|YP_001435157.1| - 0.055 13.4 0.3 11 6.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2HC_2 PF13913.1 gi|156937361|ref|YP_001435157.1| - 0.063 12.9 0.1 0.063 12.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DNA_RNApol_7kD PF03604.8 gi|156937361|ref|YP_001435157.1| - 0.43 10.0 2.6 5.3 6.6 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Glyco_trans_1_4 PF13692.1 gi|156937362|ref|YP_001435158.1| - 6.3e-10 39.3 0.0 1.7e-09 37.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Asn_synthase PF00733.16 gi|156937363|ref|YP_001435159.1| - 3.5e-42 144.6 0.0 4.9e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|156937363|ref|YP_001435159.1| - 1.1e-40 138.2 0.0 2e-40 137.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|156937363|ref|YP_001435159.1| - 4e-40 136.8 0.0 1.6e-39 134.9 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.3 gi|156937363|ref|YP_001435159.1| - 1.1e-08 34.5 0.0 2.1e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein GATase_2 PF00310.16 gi|156937363|ref|YP_001435159.1| - 4.2e-05 22.4 0.1 0.054 12.2 0.0 3.2 1 1 1 3 3 3 2 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|156937363|ref|YP_001435159.1| - 0.0027 16.6 0.0 0.0045 15.9 0.0 1.3 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|156937363|ref|YP_001435159.1| - 0.086 11.3 0.0 0.13 10.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase UbiD PF01977.11 gi|156937364|ref|YP_001435160.1| - 5e-144 479.7 0.0 6e-144 479.4 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HupF_HypC PF01455.13 gi|156937365|ref|YP_001435161.1| - 5.6e-23 80.7 0.1 7.5e-23 80.3 0.1 1.2 1 0 0 1 1 1 1 HupF/HypC family AA_permease_2 PF13520.1 gi|156937366|ref|YP_001435162.1| - 5e-34 117.5 34.0 6.6e-34 117.1 23.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|156937366|ref|YP_001435162.1| - 7.6e-29 100.3 33.7 9.7e-29 100.0 23.3 1.1 1 0 0 1 1 1 1 Amino acid permease RNA_pol_L_2 PF13656.1 gi|156937368|ref|YP_001435164.1| - 3e-15 55.3 0.0 3.7e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|156937368|ref|YP_001435164.1| - 7.8e-05 21.7 0.1 0.00028 19.9 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain SseB_C PF14581.1 gi|156937368|ref|YP_001435164.1| - 0.021 14.6 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain DUF2067 PF09840.4 gi|156937369|ref|YP_001435165.1| - 1e-24 87.1 5.3 1.2e-24 86.9 3.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF2336 PF10098.4 gi|156937369|ref|YP_001435165.1| - 0.025 13.7 0.0 0.08 12.1 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2336) ECR1_N PF14382.1 gi|156937370|ref|YP_001435166.1| - 8.5e-16 56.9 0.5 2.8e-15 55.3 0.1 1.9 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region zinc_ribbon_2 PF13240.1 gi|156937370|ref|YP_001435166.1| - 0.00021 20.6 4.6 0.00039 19.7 3.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156937370|ref|YP_001435166.1| - 0.0022 17.1 5.6 0.29 10.4 0.6 2.2 1 1 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156937370|ref|YP_001435166.1| - 0.0023 17.5 0.5 0.0039 16.8 0.3 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|156937370|ref|YP_001435166.1| - 0.0076 16.0 0.3 0.013 15.2 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Biotin_lipoyl PF00364.17 gi|156937370|ref|YP_001435166.1| - 0.013 15.1 0.0 0.096 12.3 0.0 2.4 3 0 0 3 3 3 0 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|156937370|ref|YP_001435166.1| - 0.022 14.4 0.2 0.98 9.1 0.0 3.2 4 0 0 4 4 4 0 Biotin-lipoyl like Auto_anti-p27 PF06677.7 gi|156937370|ref|YP_001435166.1| - 0.031 14.0 1.1 0.059 13.1 0.8 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) EXOSC1 PF10447.4 gi|156937370|ref|YP_001435166.1| - 0.042 13.8 0.1 0.097 12.6 0.0 1.8 1 1 0 1 1 1 0 Exosome component EXOSC1/CSL4 Nudix_N_2 PF14803.1 gi|156937370|ref|YP_001435166.1| - 0.08 12.6 2.2 0.28 10.9 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|156937370|ref|YP_001435166.1| - 0.092 12.2 1.2 0.16 11.4 0.9 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain HypA PF01155.14 gi|156937370|ref|YP_001435166.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_ribbon_recom PF13408.1 gi|156937370|ref|YP_001435166.1| - 1.2 9.4 4.2 13 6.1 2.9 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-NADH-PPase PF09297.6 gi|156937370|ref|YP_001435166.1| - 1.7 8.1 4.2 8.7 5.9 2.9 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|156937370|ref|YP_001435166.1| - 4.3 6.7 5.3 56 3.1 3.7 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding Acetyltransf_1 PF00583.19 gi|156937371|ref|YP_001435167.1| - 7e-24 83.6 0.1 9.7e-24 83.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|156937371|ref|YP_001435167.1| - 7.4e-15 54.8 0.0 1e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|156937371|ref|YP_001435167.1| - 8.6e-15 54.8 0.0 1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|156937371|ref|YP_001435167.1| - 5.1e-13 49.2 0.0 2.8e-12 46.8 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|156937371|ref|YP_001435167.1| - 6.3e-11 42.3 0.0 8e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|156937371|ref|YP_001435167.1| - 2.4e-08 34.2 0.1 3.1e-06 27.3 0.0 2.1 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|156937371|ref|YP_001435167.1| - 9.8e-07 28.4 0.1 1.5e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|156937371|ref|YP_001435167.1| - 0.00028 20.7 0.0 0.0016 18.2 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|156937371|ref|YP_001435167.1| - 0.00047 19.9 0.0 0.00074 19.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|156937371|ref|YP_001435167.1| - 0.0043 17.0 0.0 0.0053 16.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.5 gi|156937371|ref|YP_001435167.1| - 0.029 14.3 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region GNAT_acetyltr_2 PF13718.1 gi|156937371|ref|YP_001435167.1| - 0.1 11.9 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF3749 PF12568.3 gi|156937371|ref|YP_001435167.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PALP PF00291.20 gi|156937373|ref|YP_001435169.1| - 2.4e-63 214.1 2.7 2.9e-63 213.9 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|156937373|ref|YP_001435169.1| - 0.00059 19.3 1.6 0.042 13.3 0.4 2.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase PrpR_N PF06506.6 gi|156937373|ref|YP_001435169.1| - 0.011 15.1 0.7 1.3 8.3 0.1 2.5 2 0 0 2 2 2 0 Propionate catabolism activator ETF PF01012.16 gi|156937373|ref|YP_001435169.1| - 1.3 8.7 7.6 0.24 11.1 1.3 2.7 2 2 0 3 3 3 0 Electron transfer flavoprotein domain V4R PF02830.13 gi|156937374|ref|YP_001435170.1| - 9e-14 51.0 0.0 1.8e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 V4R domain TGS PF02824.16 gi|156937375|ref|YP_001435171.1| - 4.9e-20 71.1 0.0 1.3e-19 69.7 0.0 1.8 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|156937375|ref|YP_001435171.1| - 7.3e-14 51.7 0.0 7.7e-13 48.4 0.0 2.3 1 1 1 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|156937375|ref|YP_001435171.1| - 1.9e-06 27.2 0.0 8.5e-05 21.8 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B ArgK PF03308.11 gi|156937375|ref|YP_001435171.1| - 0.011 14.4 0.1 0.79 8.4 0.0 2.4 2 0 0 2 2 2 0 ArgK protein MMR_HSR1_C PF08438.5 gi|156937375|ref|YP_001435171.1| - 0.012 15.8 0.0 0.035 14.3 0.0 1.8 1 1 0 1 1 1 0 GTPase of unknown function C-terminal Miro PF08477.8 gi|156937375|ref|YP_001435171.1| - 0.018 15.5 0.0 0.2 12.1 0.0 2.4 2 1 0 2 2 2 0 Miro-like protein Oxidored_nitro PF00148.14 gi|156937375|ref|YP_001435171.1| - 0.11 11.0 0.1 0.21 10.1 0.0 1.6 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase GTP_EFTU PF00009.22 gi|156937375|ref|YP_001435171.1| - 0.15 11.4 0.0 0.43 9.9 0.0 1.8 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain NAD_binding_8 PF13450.1 gi|156937376|ref|YP_001435172.1| - 0.00057 19.8 0.2 0.0015 18.4 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|156937376|ref|YP_001435172.1| - 0.0012 17.8 0.3 0.064 12.1 0.0 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|156937376|ref|YP_001435172.1| - 0.0034 17.2 0.0 0.0074 16.1 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|156937376|ref|YP_001435172.1| - 0.0036 16.2 3.1 0.38 9.6 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|156937376|ref|YP_001435172.1| - 0.021 15.2 0.7 0.056 13.8 0.5 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|156937376|ref|YP_001435172.1| - 0.12 11.6 0.1 0.21 10.9 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|156937376|ref|YP_001435172.1| - 0.2 10.2 0.2 12 4.3 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|156937376|ref|YP_001435172.1| - 0.27 10.2 1.6 0.78 8.7 0.2 2.2 2 0 0 2 2 2 0 FAD binding domain dUTPase PF00692.14 gi|156937378|ref|YP_001435174.1| - 3e-34 117.2 0.0 3.3e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 dUTPase Herpes_UL82_83 PF05784.6 gi|156937378|ref|YP_001435174.1| - 0.0025 16.6 0.0 0.0028 16.4 0.0 1.1 1 0 0 1 1 1 1 Betaherpesvirus UL82/83 protein N terminus Prenyltransf PF01255.14 gi|156937379|ref|YP_001435175.1| - 3.5e-82 274.8 0.1 4.7e-82 274.4 0.1 1.2 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF2209 PF09974.4 gi|156937379|ref|YP_001435175.1| - 0.068 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2209) AAA PF00004.24 gi|156937380|ref|YP_001435176.1| - 1.3e-44 151.5 0.0 3.1e-44 150.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|156937380|ref|YP_001435176.1| - 7.1e-07 29.2 0.1 2.7e-06 27.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|156937380|ref|YP_001435176.1| - 1.3e-06 27.6 0.0 2.8e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|156937380|ref|YP_001435176.1| - 2.3e-05 24.1 0.2 0.00018 21.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|156937380|ref|YP_001435176.1| - 7.1e-05 22.8 0.0 0.00037 20.5 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|156937380|ref|YP_001435176.1| - 0.00051 20.1 0.3 0.035 14.2 0.1 2.6 2 1 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|156937380|ref|YP_001435176.1| - 0.00068 20.4 0.2 0.0025 18.6 0.0 2.0 2 1 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|156937380|ref|YP_001435176.1| - 0.0014 17.4 0.0 0.0024 16.6 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus AAA_14 PF13173.1 gi|156937380|ref|YP_001435176.1| - 0.0039 17.0 0.0 0.0078 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|156937380|ref|YP_001435176.1| - 0.0039 16.1 0.0 0.0071 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|156937380|ref|YP_001435176.1| - 0.0063 16.4 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|156937380|ref|YP_001435176.1| - 0.0081 15.3 0.1 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI HALZ PF02183.13 gi|156937380|ref|YP_001435176.1| - 0.0098 15.5 0.4 0.029 14.0 0.3 1.8 1 0 0 1 1 1 1 Homeobox associated leucine zipper bZIP_1 PF00170.16 gi|156937380|ref|YP_001435176.1| - 0.012 15.6 1.0 0.031 14.2 0.7 1.6 1 0 0 1 1 1 0 bZIP transcription factor AAA_19 PF13245.1 gi|156937380|ref|YP_001435176.1| - 0.016 14.9 0.2 0.045 13.5 0.2 1.8 1 0 0 1 1 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|156937380|ref|YP_001435176.1| - 0.019 15.1 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|156937380|ref|YP_001435176.1| - 0.021 13.9 0.0 0.039 13.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TBPIP PF07106.8 gi|156937380|ref|YP_001435176.1| - 0.025 14.1 0.1 0.066 12.7 0.1 1.7 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IstB_IS21 PF01695.12 gi|156937380|ref|YP_001435176.1| - 0.027 13.8 0.1 0.059 12.7 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|156937380|ref|YP_001435176.1| - 0.03 14.6 0.0 0.32 11.2 0.0 2.4 1 1 0 2 2 2 0 ABC transporter AAA_33 PF13671.1 gi|156937380|ref|YP_001435176.1| - 0.03 14.1 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|156937380|ref|YP_001435176.1| - 0.031 13.8 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|156937380|ref|YP_001435176.1| - 0.041 13.5 0.0 16 5.0 0.0 2.9 2 1 1 3 3 3 0 Bacterial dnaA protein AAA_18 PF13238.1 gi|156937380|ref|YP_001435176.1| - 0.041 14.1 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain DivIC PF04977.10 gi|156937380|ref|YP_001435176.1| - 0.056 12.9 0.2 0.2 11.1 0.1 1.9 1 0 0 1 1 1 0 Septum formation initiator AAA_25 PF13481.1 gi|156937380|ref|YP_001435176.1| - 0.063 12.6 0.9 0.78 9.1 0.0 2.6 2 1 1 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|156937380|ref|YP_001435176.1| - 0.068 12.8 0.1 0.51 10.0 0.1 2.3 1 1 1 2 2 2 0 Archaeal ATPase KaiC PF06745.8 gi|156937380|ref|YP_001435176.1| - 0.076 12.1 0.1 0.6 9.1 0.0 2.2 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.17 gi|156937380|ref|YP_001435176.1| - 0.079 11.8 0.0 0.21 10.3 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain TSC22 PF01166.13 gi|156937380|ref|YP_001435176.1| - 0.089 12.7 2.0 0.28 11.1 1.4 1.8 1 0 0 1 1 1 0 TSC-22/dip/bun family NACHT PF05729.7 gi|156937380|ref|YP_001435176.1| - 0.12 12.0 0.2 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 NACHT domain DUF904 PF06005.7 gi|156937380|ref|YP_001435176.1| - 0.12 12.6 1.7 0.47 10.7 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Prefoldin_2 PF01920.15 gi|156937380|ref|YP_001435176.1| - 0.16 11.7 2.5 0.28 10.9 0.9 2.0 2 0 0 2 2 1 0 Prefoldin subunit Ribosomal_S19 PF00203.16 gi|156937381|ref|YP_001435177.1| - 1.6e-28 98.0 0.9 2.1e-28 97.7 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Sec6 PF06046.8 gi|156937381|ref|YP_001435177.1| - 0.001 17.2 0.1 0.0013 16.9 0.1 1.1 1 0 0 1 1 1 1 Exocyst complex component Sec6 Ribosomal_L22 PF00237.14 gi|156937382|ref|YP_001435178.1| - 1.5e-35 121.2 0.1 1.9e-35 120.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|156937383|ref|YP_001435179.1| - 1.1e-15 57.6 0.7 2.7e-15 56.3 0.5 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|156937383|ref|YP_001435179.1| - 1.1e-12 47.3 0.2 1.1e-12 47.3 0.1 2.3 2 1 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|156937383|ref|YP_001435179.1| - 0.0016 18.0 1.0 0.0016 18.0 0.7 2.7 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|156937383|ref|YP_001435179.1| - 0.0055 16.3 0.8 0.018 14.6 0.0 2.4 2 1 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|156937383|ref|YP_001435179.1| - 0.018 14.6 0.9 0.018 14.6 0.7 2.8 3 0 0 3 3 3 0 KH domain KH_5 PF13184.1 gi|156937383|ref|YP_001435179.1| - 0.051 13.3 1.7 0.2 11.4 0.0 2.8 4 0 0 4 4 4 0 NusA-like KH domain Ribosomal_L29 PF00831.18 gi|156937384|ref|YP_001435180.1| - 2.9e-22 78.0 4.6 3.4e-22 77.8 3.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.1 gi|156937384|ref|YP_001435180.1| - 0.0099 16.0 1.3 0.011 15.9 0.9 1.2 1 0 0 1 1 1 1 Calmodulin-binding ERM PF00769.14 gi|156937384|ref|YP_001435180.1| - 0.024 14.2 0.8 0.027 14.0 0.6 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family DUF2299 PF10061.4 gi|156937384|ref|YP_001435180.1| - 0.046 13.1 0.2 0.052 12.9 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) UPF0086 PF01868.11 gi|156937385|ref|YP_001435181.1| - 2.7e-26 91.0 0.2 3e-26 90.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 HpaB_N PF11794.3 gi|156937388|ref|YP_001435184.1| - 7.5e-91 304.1 0.3 1.2e-90 303.5 0.2 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|156937388|ref|YP_001435184.1| - 8e-62 207.7 0.2 1.2e-61 207.2 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_1 PF00441.19 gi|156937388|ref|YP_001435184.1| - 0.00043 20.4 0.1 0.00091 19.3 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Amidohydro_1 PF01979.15 gi|156937389|ref|YP_001435185.1| - 3.5e-17 63.0 0.0 7.6e-08 32.3 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|156937389|ref|YP_001435185.1| - 4.5e-14 53.1 0.0 6.8e-13 49.2 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|156937389|ref|YP_001435185.1| - 9.4e-06 25.3 0.0 2.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|156937389|ref|YP_001435185.1| - 0.00042 19.6 0.0 0.23 10.6 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family COG7 PF10191.4 gi|156937389|ref|YP_001435185.1| - 0.24 9.2 0.0 0.33 8.8 0.0 1.1 1 0 0 1 1 1 0 Golgi complex component 7 (COG7) CBS PF00571.23 gi|156937391|ref|YP_001435187.1| - 5.1e-37 125.4 5.5 4e-19 68.1 0.3 2.1 2 0 0 2 2 2 2 CBS domain Pribosyltran PF00156.22 gi|156937393|ref|YP_001435189.1| - 2.5e-12 46.6 1.1 4.7e-12 45.7 0.8 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_7 PF13537.1 gi|156937393|ref|YP_001435189.1| - 0.014 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|156937393|ref|YP_001435189.1| - 0.098 11.3 0.0 1.2 7.7 0.0 2.0 2 0 0 2 2 2 0 Glutamine amidotransferases class-II Fer4 PF00037.22 gi|156937394|ref|YP_001435190.1| - 9.9e-17 59.7 40.8 6e-07 28.8 2.1 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156937394|ref|YP_001435190.1| - 2.5e-14 53.3 37.4 1.3e-08 35.0 7.4 4.1 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937394|ref|YP_001435190.1| - 5.8e-14 51.2 47.5 5.6e-07 29.1 0.9 6.4 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156937394|ref|YP_001435190.1| - 4.9e-13 48.6 38.7 1.8e-08 34.0 8.2 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937394|ref|YP_001435190.1| - 1e-09 37.7 45.0 3.7e-06 26.5 2.2 5.5 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|156937394|ref|YP_001435190.1| - 8.3e-09 35.1 36.4 1e-05 25.2 7.3 4.6 4 2 1 5 5 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156937394|ref|YP_001435190.1| - 2.3e-08 34.6 31.3 0.056 14.1 0.2 5.5 5 1 1 6 6 5 5 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|156937394|ref|YP_001435190.1| - 2.5e-08 34.0 38.4 0.0001 22.4 6.6 4.6 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156937394|ref|YP_001435190.1| - 4.3e-07 30.3 21.9 0.0004 20.8 0.1 4.9 5 0 0 5 5 5 3 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|156937394|ref|YP_001435190.1| - 2.9e-06 27.1 48.9 0.0011 19.0 1.5 6.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156937394|ref|YP_001435190.1| - 5.2e-06 26.3 38.8 0.044 13.8 10.0 4.5 1 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|156937394|ref|YP_001435190.1| - 1.2e-05 25.0 20.0 0.0023 17.7 3.1 3.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156937394|ref|YP_001435190.1| - 1.8e-05 25.0 26.8 0.0033 17.8 1.0 4.6 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|156937394|ref|YP_001435190.1| - 0.00012 22.3 47.5 0.017 15.6 3.2 5.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156937394|ref|YP_001435190.1| - 0.0021 18.3 37.8 0.036 14.4 0.7 5.4 4 2 3 7 7 7 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|156937394|ref|YP_001435190.1| - 0.0085 16.4 1.6 0.0085 16.4 1.1 4.9 5 0 0 5 5 4 1 4Fe-4S single cluster domain HTH_3 PF01381.17 gi|156937395|ref|YP_001435191.1| - 1.5e-08 34.3 0.0 3.7e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|156937395|ref|YP_001435191.1| - 1.1e-06 28.6 0.1 2.3e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|156937395|ref|YP_001435191.1| - 0.0028 17.8 0.0 0.0053 16.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|156937395|ref|YP_001435191.1| - 0.011 15.4 0.1 0.32 10.8 0.0 2.9 2 2 1 3 3 3 0 MerR HTH family regulatory protein NUMOD1 PF07453.8 gi|156937395|ref|YP_001435191.1| - 0.027 14.2 0.0 0.08 12.8 0.0 1.9 1 0 0 1 1 1 0 NUMOD1 domain HTH_25 PF13413.1 gi|156937395|ref|YP_001435191.1| - 0.032 13.8 0.0 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|156937395|ref|YP_001435191.1| - 0.044 13.3 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|156937395|ref|YP_001435191.1| - 0.13 11.8 0.0 2.8 7.6 0.0 2.7 2 0 0 2 2 2 0 HTH DNA binding domain CENP-B_N PF04218.8 gi|156937395|ref|YP_001435191.1| - 0.14 11.6 0.1 0.45 9.9 0.0 1.8 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain NAC PF01849.13 gi|156937396|ref|YP_001435192.1| - 7.4e-07 28.5 0.3 7.4e-07 28.5 0.2 2.0 2 1 1 3 3 3 1 NAC domain UBA PF00627.26 gi|156937396|ref|YP_001435192.1| - 1.5e-06 27.8 0.0 3.5e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 UBA/TS-N domain UBA_4 PF14555.1 gi|156937396|ref|YP_001435192.1| - 0.054 13.0 0.0 0.092 12.2 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain Ald_Xan_dh_C2 PF02738.13 gi|156937396|ref|YP_001435192.1| - 0.07 11.4 0.0 0.078 11.2 0.0 1.1 1 0 0 1 1 1 0 Molybdopterin-binding domain of aldehyde dehydrogenase Beta-Casp PF10996.3 gi|156937397|ref|YP_001435193.1| - 6.5e-19 68.1 0.0 1.2e-18 67.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|156937397|ref|YP_001435193.1| - 1.3e-17 64.0 0.4 2.2e-17 63.3 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|156937397|ref|YP_001435193.1| - 3.4e-12 45.9 0.1 7.5e-12 44.8 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|156937397|ref|YP_001435193.1| - 3.9e-12 46.1 0.0 1.5e-11 44.2 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Rhodanese PF00581.15 gi|156937397|ref|YP_001435193.1| - 0.013 15.8 0.0 0.12 12.6 0.0 2.3 2 0 0 2 2 2 0 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|156937397|ref|YP_001435193.1| - 0.03 14.0 0.0 0.12 12.0 0.0 2.0 1 1 1 2 2 2 0 Beta-lactamase superfamily domain DapH_N PF08503.5 gi|156937398|ref|YP_001435194.1| - 0.11 12.6 0.1 0.17 12.0 0.1 1.4 1 1 0 1 1 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal Ribosomal_L38e PF01781.13 gi|156937398|ref|YP_001435194.1| - 0.2 11.4 1.9 0.29 10.9 1.3 1.3 1 0 0 1 1 1 0 Ribosomal L38e protein family AMMECR1 PF01871.12 gi|156937399|ref|YP_001435195.1| - 2.7e-53 179.6 0.0 3.2e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PhoU PF01895.14 gi|156937400|ref|YP_001435196.1| - 6e-19 68.2 7.4 2.3e-12 47.1 0.4 2.1 2 0 0 2 2 2 2 PhoU domain GAS PF13851.1 gi|156937400|ref|YP_001435196.1| - 0.016 14.4 0.6 0.027 13.6 0.5 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding COG5 PF10392.4 gi|156937400|ref|YP_001435196.1| - 0.023 14.6 0.5 0.071 13.0 0.1 1.9 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DUF773 PF05600.7 gi|156937400|ref|YP_001435196.1| - 0.057 12.1 0.1 0.076 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF773) DUF2365 PF10157.4 gi|156937400|ref|YP_001435196.1| - 0.099 12.5 0.9 13 5.6 0.0 2.6 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2365) Syntaxin-6_N PF09177.6 gi|156937400|ref|YP_001435196.1| - 0.27 11.6 1.6 1 9.8 0.4 2.2 1 1 0 1 1 1 0 Syntaxin 6, N-terminal IlvN PF07991.7 gi|156937401|ref|YP_001435197.1| - 2.4e-74 248.2 0.0 7e-74 246.6 0.0 1.8 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|156937401|ref|YP_001435197.1| - 1.5e-45 154.6 1.3 2e-45 154.2 0.9 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|156937401|ref|YP_001435197.1| - 1.4e-05 25.3 0.0 4.1e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|156937401|ref|YP_001435197.1| - 2e-05 23.8 0.0 4.9e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|156937401|ref|YP_001435197.1| - 0.0023 18.0 0.0 0.037 14.1 0.0 2.4 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|156937401|ref|YP_001435197.1| - 0.0033 17.2 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|156937401|ref|YP_001435197.1| - 0.029 13.8 0.0 0.084 12.3 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|156937401|ref|YP_001435197.1| - 0.053 13.3 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Oxidored_nitro PF00148.14 gi|156937401|ref|YP_001435197.1| - 0.12 10.9 0.0 0.25 9.9 0.0 1.5 2 0 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|156937401|ref|YP_001435197.1| - 0.13 12.0 0.1 7.7 6.2 0.1 2.9 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V_ATPase_I PF01496.14 gi|156937402|ref|YP_001435198.1| - 3.6e-43 147.5 11.9 3.6e-43 147.5 8.2 2.8 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family PCNA_N PF00705.13 gi|156937403|ref|YP_001435199.1| - 7.6e-13 48.0 0.0 1.6e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|156937403|ref|YP_001435199.1| - 7e-07 29.2 0.2 3e-06 27.1 0.0 2.1 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|156937403|ref|YP_001435199.1| - 1.1e-06 27.5 0.0 0.0023 16.7 0.0 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|156937403|ref|YP_001435199.1| - 0.023 13.8 0.0 0.038 13.0 0.0 1.4 1 0 0 1 1 1 0 Rad9 AdoMet_dc PF02675.10 gi|156937404|ref|YP_001435200.1| - 2.3e-31 107.7 0.0 2.7e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Chitin_synth_1N PF08407.6 gi|156937406|ref|YP_001435202.1| - 0.041 13.5 0.1 0.048 13.3 0.1 1.3 1 1 0 1 1 1 0 Chitin synthase N-terminal MgtE PF01769.11 gi|156937407|ref|YP_001435203.1| - 1.6e-18 67.3 24.3 2.2e-12 47.4 3.8 3.0 2 1 1 3 3 3 2 Divalent cation transporter Lactamase_B_2 PF12706.2 gi|156937408|ref|YP_001435204.1| - 7.8e-09 35.3 0.0 2.4e-08 33.7 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|156937408|ref|YP_001435204.1| - 0.0096 15.5 5.6 0.12 12.0 4.2 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Proteasome PF00227.21 gi|156937409|ref|YP_001435205.1| - 6.1e-52 175.6 0.1 7.5e-52 175.3 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Pyr_redox_2 PF07992.9 gi|156937410|ref|YP_001435206.1| - 2.5e-26 92.8 8.1 2.8e-25 89.3 5.6 3.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|156937410|ref|YP_001435206.1| - 1.2e-23 84.2 0.3 1.7e-16 60.8 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|156937410|ref|YP_001435206.1| - 2.1e-18 66.4 7.1 4e-14 52.7 0.9 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|156937410|ref|YP_001435206.1| - 2.5e-11 43.2 3.1 2e-06 27.1 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|156937410|ref|YP_001435206.1| - 2.4e-10 39.8 8.6 0.0047 15.8 0.1 3.6 3 1 0 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|156937410|ref|YP_001435206.1| - 5.8e-10 38.2 2.1 0.00032 19.2 0.1 3.4 3 0 0 3 3 3 3 HI0933-like protein GIDA PF01134.17 gi|156937410|ref|YP_001435206.1| - 1.9e-09 36.9 4.7 0.014 14.2 0.1 3.8 4 0 0 4 4 4 3 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|156937410|ref|YP_001435206.1| - 2.5e-09 37.0 0.5 6e-06 26.1 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|156937410|ref|YP_001435206.1| - 5.9e-09 35.2 4.9 1.8e-05 23.7 0.1 3.8 3 1 1 4 4 4 2 FAD binding domain NAD_binding_7 PF13241.1 gi|156937410|ref|YP_001435206.1| - 5.8e-08 32.9 2.4 0.00013 22.1 0.3 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|156937410|ref|YP_001435206.1| - 2e-07 30.3 5.3 0.0037 16.3 0.0 3.1 2 1 1 3 3 3 2 Thi4 family Shikimate_DH PF01488.15 gi|156937410|ref|YP_001435206.1| - 1.1e-06 28.7 1.4 0.0039 17.2 0.1 2.6 3 0 0 3 3 2 2 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|156937410|ref|YP_001435206.1| - 3.4e-05 24.1 0.6 0.0011 19.3 0.1 2.2 2 0 0 2 2 2 1 XdhC Rossmann domain CPSase_L_chain PF00289.17 gi|156937410|ref|YP_001435206.1| - 0.00013 21.9 0.4 1.8 8.7 0.0 3.3 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain Lycopene_cycl PF05834.7 gi|156937410|ref|YP_001435206.1| - 0.00014 20.9 0.1 0.005 15.8 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.1 gi|156937410|ref|YP_001435206.1| - 0.00018 20.5 0.0 0.012 14.5 0.0 2.7 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|156937410|ref|YP_001435206.1| - 0.00045 19.8 4.7 0.76 9.3 0.1 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.14 gi|156937410|ref|YP_001435206.1| - 0.00047 18.9 1.2 0.0022 16.6 0.1 2.2 1 1 1 2 2 2 1 Nitrogenase component 1 type Oxidoreductase FAD_oxidored PF12831.2 gi|156937410|ref|YP_001435206.1| - 0.00061 18.9 11.5 0.16 10.9 0.7 3.8 3 1 1 4 4 4 2 FAD dependent oxidoreductase FMO-like PF00743.14 gi|156937410|ref|YP_001435206.1| - 0.00091 17.5 0.0 0.0041 15.3 0.0 1.8 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.1 gi|156937410|ref|YP_001435206.1| - 0.0011 18.7 1.4 3.1 7.5 0.0 3.6 3 1 1 4 4 4 1 FAD-NAD(P)-binding PALP PF00291.20 gi|156937410|ref|YP_001435206.1| - 0.0028 16.9 0.7 0.14 11.3 0.1 2.3 1 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme 3HCDH_N PF02737.13 gi|156937410|ref|YP_001435206.1| - 0.0042 16.7 2.2 0.028 14.0 0.5 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|156937410|ref|YP_001435206.1| - 0.0056 16.6 1.3 2.7 8.0 0.1 2.9 3 0 0 3 3 3 1 TrkA-N domain ApbA PF02558.11 gi|156937410|ref|YP_001435206.1| - 0.012 15.0 0.6 2.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|156937410|ref|YP_001435206.1| - 0.016 13.8 5.2 0.2 10.2 0.2 2.5 3 0 0 3 3 3 0 Tryptophan halogenase IlvN PF07991.7 gi|156937410|ref|YP_001435206.1| - 0.018 14.4 0.1 0.36 10.1 0.1 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|156937410|ref|YP_001435206.1| - 0.018 14.7 0.2 0.53 9.9 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.16 gi|156937410|ref|YP_001435206.1| - 0.019 14.8 0.6 1.1 9.0 0.0 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.16 gi|156937410|ref|YP_001435206.1| - 0.11 12.3 1.2 9 6.1 0.0 2.6 3 0 0 3 3 2 0 ThiF family 2-Hacid_dh_C PF02826.14 gi|156937410|ref|YP_001435206.1| - 0.12 11.4 0.5 2.7 7.1 0.1 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|156937410|ref|YP_001435206.1| - 0.16 11.0 0.3 0.64 9.0 0.0 2.1 2 1 0 2 2 2 0 Flavin containing amine oxidoreductase DUF3983 PF13137.1 gi|156937410|ref|YP_001435206.1| - 0.42 10.3 1.7 0.48 10.1 0.4 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF3983) UPF0020 PF01170.13 gi|156937412|ref|YP_001435208.1| - 1.1e-34 119.6 0.0 1.5e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|156937412|ref|YP_001435208.1| - 1.1e-15 57.6 0.1 1.7e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156937412|ref|YP_001435208.1| - 2.1e-08 33.7 0.0 3.1e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|156937412|ref|YP_001435208.1| - 3.9e-06 27.2 0.0 9.7e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|156937412|ref|YP_001435208.1| - 5.8e-06 25.8 0.0 9.3e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|156937412|ref|YP_001435208.1| - 9.3e-05 22.0 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|156937412|ref|YP_001435208.1| - 0.00014 22.2 0.0 0.00025 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|156937412|ref|YP_001435208.1| - 0.0005 19.6 0.0 0.17 11.3 0.0 2.3 2 0 0 2 2 2 2 DNA methylase PrmA PF06325.8 gi|156937412|ref|YP_001435208.1| - 0.023 13.8 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MethyltransfD12 PF02086.10 gi|156937412|ref|YP_001435208.1| - 0.17 11.2 0.0 0.44 9.9 0.0 1.6 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase FMN_red PF03358.10 gi|156937413|ref|YP_001435209.1| - 8.1e-35 119.5 0.0 1.2e-34 119.0 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|156937413|ref|YP_001435209.1| - 2.5e-14 53.2 0.0 3.2e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin-like fold AA_kinase PF00696.23 gi|156937414|ref|YP_001435210.1| - 5.3e-33 114.5 2.6 6.1e-33 114.3 1.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family UDPG_MGDP_dh_N PF03721.9 gi|156937415|ref|YP_001435211.1| - 9.8e-60 201.0 0.2 2.5e-58 196.5 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|156937415|ref|YP_001435211.1| - 4e-27 94.2 0.0 9.2e-27 93.1 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|156937415|ref|YP_001435211.1| - 4.6e-25 87.8 0.1 9.1e-24 83.6 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|156937415|ref|YP_001435211.1| - 2.1e-09 37.4 0.1 2e-08 34.2 0.0 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|156937415|ref|YP_001435211.1| - 3.3e-07 30.1 0.4 1.5e-06 28.0 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|156937415|ref|YP_001435211.1| - 1.3e-05 24.9 0.3 0.00018 21.2 0.0 2.6 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|156937415|ref|YP_001435211.1| - 4.3e-05 23.4 0.0 0.00016 21.6 0.0 2.0 1 0 0 1 1 1 1 TrkA-N domain Methyltransf_31 PF13847.1 gi|156937415|ref|YP_001435211.1| - 0.00056 19.5 0.0 0.028 14.0 0.0 3.1 2 1 0 2 2 2 1 Methyltransferase domain F420_oxidored PF03807.12 gi|156937415|ref|YP_001435211.1| - 0.0011 19.3 0.3 0.005 17.2 0.0 2.3 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|156937415|ref|YP_001435211.1| - 0.002 17.5 0.0 0.0048 16.3 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|156937415|ref|YP_001435211.1| - 0.0048 17.2 0.3 0.062 13.7 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|156937415|ref|YP_001435211.1| - 0.0067 16.2 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 ThiF family UPF0146 PF03686.8 gi|156937415|ref|YP_001435211.1| - 0.0083 15.9 0.2 0.056 13.2 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|156937415|ref|YP_001435211.1| - 0.013 15.2 0.0 0.24 11.1 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937415|ref|YP_001435211.1| - 0.025 15.1 0.0 0.22 12.1 0.0 2.5 3 1 1 4 4 3 0 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|156937415|ref|YP_001435211.1| - 0.035 13.2 0.0 0.069 12.3 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|156937415|ref|YP_001435211.1| - 0.056 12.4 0.1 0.21 10.5 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase DAO PF01266.19 gi|156937415|ref|YP_001435211.1| - 0.088 11.6 2.3 0.13 11.1 0.3 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase TPMT PF05724.6 gi|156937415|ref|YP_001435211.1| - 0.093 12.1 0.0 0.54 9.6 0.0 2.2 2 1 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) GFO_IDH_MocA PF01408.17 gi|156937415|ref|YP_001435211.1| - 0.1 13.1 0.0 0.29 11.6 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase_2 PF02350.14 gi|156937416|ref|YP_001435212.1| - 3.2e-99 331.9 0.0 3.8e-99 331.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_1_4 PF13692.1 gi|156937418|ref|YP_001435214.1| - 3.5e-07 30.4 0.0 7.3e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|156937418|ref|YP_001435214.1| - 0.034 13.5 0.0 0.1 12.0 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|156937418|ref|YP_001435214.1| - 0.054 13.2 0.0 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|156937419|ref|YP_001435215.1| - 1.4e-08 34.9 0.0 1.8e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|156937419|ref|YP_001435215.1| - 0.00051 20.2 0.0 0.0015 18.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|156937419|ref|YP_001435215.1| - 0.0078 16.3 0.9 0.021 14.9 0.2 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain HTH_AraC PF00165.18 gi|156937420|ref|YP_001435216.1| - 0.022 14.6 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family GFO_IDH_MocA PF01408.17 gi|156937421|ref|YP_001435217.1| - 2.1e-16 60.5 0.1 4.6e-12 46.5 0.0 2.5 2 0 0 2 2 2 2 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.21 gi|156937421|ref|YP_001435217.1| - 1.2e-15 57.1 0.0 3.8e-15 55.5 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|156937421|ref|YP_001435217.1| - 2.9e-05 24.0 0.2 8.1e-05 22.6 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|156937421|ref|YP_001435217.1| - 3.4e-05 23.0 0.1 0.00016 20.8 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|156937421|ref|YP_001435217.1| - 0.00024 20.5 0.1 0.00078 18.8 0.0 2.0 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|156937421|ref|YP_001435217.1| - 0.00033 20.5 0.0 0.011 15.6 0.0 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N_2 PF13602.1 gi|156937421|ref|YP_001435217.1| - 0.00037 21.3 0.0 0.0026 18.6 0.0 2.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.13 gi|156937421|ref|YP_001435217.1| - 0.0025 17.5 0.5 0.0067 16.0 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|156937421|ref|YP_001435217.1| - 0.0044 17.4 0.1 0.92 9.9 0.0 2.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|156937421|ref|YP_001435217.1| - 0.0086 15.6 0.2 0.027 14.0 0.0 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|156937421|ref|YP_001435217.1| - 0.02 15.4 0.1 0.055 14.0 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937421|ref|YP_001435217.1| - 0.12 12.0 0.0 0.35 10.4 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain UPF0104 PF03706.8 gi|156937422|ref|YP_001435218.1| - 0.0036 16.6 0.2 0.0041 16.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Pex24p PF06398.6 gi|156937422|ref|YP_001435218.1| - 0.045 12.5 0.4 0.046 12.5 0.3 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin DUF2762 PF10960.3 gi|156937422|ref|YP_001435218.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2762) MARVEL PF01284.18 gi|156937422|ref|YP_001435218.1| - 0.37 10.5 3.9 0.47 10.2 2.7 1.1 1 0 0 1 1 1 0 Membrane-associating domain Radical_SAM PF04055.16 gi|156937423|ref|YP_001435219.1| - 2.5e-23 83.0 0.0 7.3e-23 81.5 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|156937423|ref|YP_001435219.1| - 7.6e-09 35.8 0.0 1.7e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|156937423|ref|YP_001435219.1| - 1.2e-07 31.8 0.0 5.3e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|156937423|ref|YP_001435219.1| - 1.1e-06 28.9 0.2 2.3e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DS PF01916.12 gi|156937424|ref|YP_001435220.1| - 3.1e-77 259.6 0.0 3.6e-77 259.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase GTP_cyclohydroI PF01227.17 gi|156937425|ref|YP_001435221.1| - 1.2e-58 197.3 0.0 1.3e-58 197.2 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I Spermine_synth PF01564.12 gi|156937426|ref|YP_001435222.1| - 3e-68 229.4 0.0 6.6e-68 228.2 0.0 1.5 2 0 0 2 2 2 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|156937426|ref|YP_001435222.1| - 1.5e-07 31.4 0.0 2.5e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|156937426|ref|YP_001435222.1| - 1.4e-06 28.6 0.0 2e-05 24.9 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937426|ref|YP_001435222.1| - 1.8e-06 27.6 0.0 2.9e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937426|ref|YP_001435222.1| - 0.00012 22.5 0.0 0.00022 21.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|156937426|ref|YP_001435222.1| - 0.00016 22.0 0.0 0.00036 20.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|156937426|ref|YP_001435222.1| - 0.0014 18.2 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|156937426|ref|YP_001435222.1| - 0.002 17.5 0.0 0.0032 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|156937426|ref|YP_001435222.1| - 0.0033 17.7 0.0 0.006 16.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|156937426|ref|YP_001435222.1| - 0.0038 18.0 0.0 0.0078 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|156937426|ref|YP_001435222.1| - 0.0051 15.8 0.0 0.0073 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_2 PF00891.13 gi|156937426|ref|YP_001435222.1| - 0.037 13.2 0.0 0.18 10.9 0.0 2.0 1 1 0 2 2 2 0 O-methyltransferase Methyltransf_3 PF01596.12 gi|156937426|ref|YP_001435222.1| - 0.054 12.5 0.0 0.093 11.7 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase Response_reg PF00072.19 gi|156937426|ref|YP_001435222.1| - 0.063 13.2 0.0 1.2 9.1 0.0 2.5 2 0 0 2 2 2 0 Response regulator receiver domain AAA_31 PF13614.1 gi|156937426|ref|YP_001435222.1| - 0.13 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Metallophos PF00149.23 gi|156937427|ref|YP_001435223.1| - 5.8e-16 58.4 0.0 1.1e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|156937427|ref|YP_001435223.1| - 0.00022 21.1 0.0 0.00032 20.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Arginosuc_synth PF00764.14 gi|156937428|ref|YP_001435224.1| - 1.3e-163 544.5 0.0 1.6e-163 544.2 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|156937428|ref|YP_001435224.1| - 2.2e-05 23.8 0.1 5.8e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|156937428|ref|YP_001435224.1| - 2.9e-05 23.7 0.0 3.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|156937428|ref|YP_001435224.1| - 0.0023 16.5 0.0 0.0038 15.8 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Usp PF00582.21 gi|156937428|ref|YP_001435224.1| - 0.1 12.8 0.4 0.21 11.7 0.3 1.5 1 0 0 1 1 1 0 Universal stress protein family DUF2276 PF10040.4 gi|156937429|ref|YP_001435225.1| - 3.1e-20 72.5 0.0 5.2e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) GMP_synt_C PF00958.17 gi|156937430|ref|YP_001435226.1| - 5e-22 77.4 0.6 5.1e-21 74.1 0.4 2.6 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|156937430|ref|YP_001435226.1| - 4e-13 48.8 0.1 2.5e-07 29.8 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|156937430|ref|YP_001435226.1| - 5.1e-09 35.8 0.0 7.9e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ThiI PF02568.9 gi|156937430|ref|YP_001435226.1| - 0.00022 20.7 0.0 0.0012 18.3 0.0 2.2 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|156937430|ref|YP_001435226.1| - 0.00057 19.4 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|156937430|ref|YP_001435226.1| - 0.0011 17.5 0.0 0.039 12.5 0.0 2.2 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|156937430|ref|YP_001435226.1| - 0.0017 17.6 0.0 0.055 12.7 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|156937430|ref|YP_001435226.1| - 0.0085 15.9 0.0 0.028 14.2 0.0 2.0 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Rifin_STEVOR PF02009.11 gi|156937432|ref|YP_001435228.1| - 0.61 9.6 8.7 0.85 9.2 6.0 1.1 1 0 0 1 1 1 0 Rifin/stevor family Nop14 PF04147.7 gi|156937432|ref|YP_001435228.1| - 6.1 4.6 8.7 8.2 4.2 6.1 1.0 1 0 0 1 1 1 0 Nop14-like family DUF1152 PF06626.7 gi|156937433|ref|YP_001435229.1| - 9.5e-114 379.5 3.2 1.1e-113 379.2 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) Ribonuc_red_2_N PF08471.5 gi|156937433|ref|YP_001435229.1| - 0.053 13.6 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 Class II vitamin B12-dependent ribonucleotide reductase NadA PF02445.11 gi|156937434|ref|YP_001435230.1| - 1.1e-101 339.6 0.0 1.2e-101 339.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF3213 PF11491.3 gi|156937434|ref|YP_001435230.1| - 0.13 12.1 0.4 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3213) zf-ribbon_3 PF13248.1 gi|156937435|ref|YP_001435231.1| - 3.3e-08 32.4 12.8 2e-05 23.6 0.7 3.0 2 1 1 3 3 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|156937435|ref|YP_001435231.1| - 3.3e-07 29.5 14.8 0.00066 19.0 2.2 3.3 2 1 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|156937435|ref|YP_001435231.1| - 7.1e-06 25.7 7.6 1.7e-05 24.4 5.3 1.6 1 1 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|156937435|ref|YP_001435231.1| - 0.00052 19.6 6.9 0.0029 17.3 1.0 2.3 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 PADR1 PF08063.7 gi|156937435|ref|YP_001435231.1| - 0.0009 18.5 7.7 1.7 8.0 0.0 3.3 1 1 2 3 3 3 3 PADR1 (NUC008) domain PolC_DP2 PF03833.8 gi|156937435|ref|YP_001435231.1| - 0.00097 16.9 0.8 0.0012 16.5 0.5 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 zinc_ribbon_5 PF13719.1 gi|156937435|ref|YP_001435231.1| - 0.002 17.6 6.6 2.1 8.0 0.1 3.9 4 0 0 4 4 4 1 zinc-ribbon domain VP_N-CPKC PF11475.3 gi|156937435|ref|YP_001435231.1| - 0.0029 17.0 0.2 0.0029 17.0 0.2 2.9 2 2 0 2 2 2 1 Virion protein N terminal domain zf-C4_Topoisom PF01396.14 gi|156937435|ref|YP_001435231.1| - 0.0031 16.9 12.0 0.97 8.9 0.4 4.3 3 1 1 4 4 4 2 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.1 gi|156937435|ref|YP_001435231.1| - 0.0057 16.6 0.1 0.0057 16.6 0.0 3.8 2 2 2 4 4 4 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.1 gi|156937435|ref|YP_001435231.1| - 0.034 13.8 9.9 3.3 7.4 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain TerY-C PF15616.1 gi|156937435|ref|YP_001435231.1| - 0.049 13.5 8.7 1.5 8.7 5.9 2.6 2 1 0 2 2 1 0 TerY-C metal binding domain zinc-ribbons_6 PF07191.7 gi|156937435|ref|YP_001435231.1| - 0.16 11.8 9.0 0.51 10.1 3.3 2.1 1 1 0 1 1 1 0 zinc-ribbons DUF2248 PF10005.4 gi|156937435|ref|YP_001435231.1| - 0.2 10.5 3.0 0.43 9.4 0.4 2.1 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2248) RNA_POL_M_15KD PF02150.11 gi|156937435|ref|YP_001435231.1| - 0.24 11.1 0.2 0.24 11.1 0.1 3.7 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit Cys_rich_CPXG PF14255.1 gi|156937435|ref|YP_001435231.1| - 0.25 11.2 9.1 9.6 6.1 0.5 3.6 4 0 0 4 4 3 0 Cysteine-rich CPXCG E6 PF00518.12 gi|156937435|ref|YP_001435231.1| - 0.32 11.3 2.9 0.37 11.1 0.2 2.3 1 1 1 2 2 2 0 Early Protein (E6) YhfH PF14149.1 gi|156937435|ref|YP_001435231.1| - 0.36 10.6 7.7 1.2 8.9 0.2 3.2 2 1 1 3 3 3 0 YhfH-like protein DNA_RNApol_7kD PF03604.8 gi|156937435|ref|YP_001435231.1| - 0.65 9.5 12.7 1.3 8.5 0.2 3.7 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|156937435|ref|YP_001435231.1| - 0.65 9.9 4.0 1.8 8.5 0.1 2.6 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-FCS PF06467.9 gi|156937435|ref|YP_001435231.1| - 0.79 9.4 11.7 8.9 6.0 1.8 3.6 2 2 1 3 3 3 0 MYM-type Zinc finger with FCS sequence motif zf-C2HC_2 PF13913.1 gi|156937435|ref|YP_001435231.1| - 1.1 9.0 14.0 5.3 6.8 0.4 3.5 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Zn_Tnp_IS1595 PF12760.2 gi|156937435|ref|YP_001435231.1| - 1.4 8.7 17.0 27 4.6 0.2 3.6 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|156937435|ref|YP_001435231.1| - 1.4 9.2 0.1 1.4 9.2 0.0 3.6 2 1 0 2 2 1 0 Restriction alleviation protein Lar zf-RING_5 PF14634.1 gi|156937435|ref|YP_001435231.1| - 2.4 7.9 8.2 7.4 6.3 0.6 3.0 2 1 2 4 4 4 0 zinc-RING finger domain CpXC PF14353.1 gi|156937435|ref|YP_001435231.1| - 3.6 7.5 9.2 35 4.3 0.1 3.6 1 1 1 2 2 2 0 CpXC protein zf-MYND PF01753.13 gi|156937435|ref|YP_001435231.1| - 4 7.3 8.4 4.1 7.3 0.7 2.3 2 0 0 2 2 2 0 MYND finger HypA PF01155.14 gi|156937435|ref|YP_001435231.1| - 5.5 6.7 9.1 3e+02 1.1 6.3 2.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C3HC4_3 PF13920.1 gi|156937435|ref|YP_001435231.1| - 5.8 6.6 10.9 62 3.3 0.2 3.0 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-TFIIB PF13453.1 gi|156937435|ref|YP_001435231.1| - 7 5.9 11.5 2.3 7.4 4.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.8 gi|156937435|ref|YP_001435231.1| - 7.2 6.2 10.0 9.4 5.8 0.2 3.3 2 1 1 3 3 3 0 InsA N-terminal domain zf-tcix PF14952.1 gi|156937435|ref|YP_001435231.1| - 8.9 5.7 14.5 1.6 8.1 0.2 3.5 3 1 1 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding Sigma70_r4 PF04545.11 gi|156937436|ref|YP_001435232.1| - 0.053 12.8 1.3 0.063 12.6 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|156937436|ref|YP_001435232.1| - 0.18 11.2 1.1 0.47 9.9 0.1 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Flu_NS2 PF00601.14 gi|156937437|ref|YP_001435233.1| - 0.0019 18.3 0.5 0.0042 17.2 0.2 1.7 2 0 0 2 2 2 1 Influenza non-structural protein (NS2) DUF4140 PF13600.1 gi|156937437|ref|YP_001435233.1| - 0.0052 17.2 0.5 0.85 10.0 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) BLOC1_2 PF10046.4 gi|156937437|ref|YP_001435233.1| - 0.023 14.7 1.7 0.62 10.2 0.3 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|156937437|ref|YP_001435233.1| - 0.078 12.5 5.5 0.59 9.6 0.3 2.0 2 0 0 2 2 2 0 IncA protein NPV_P10 PF05531.7 gi|156937437|ref|YP_001435233.1| - 0.082 13.1 0.2 5.1 7.4 0.0 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|156937437|ref|YP_001435233.1| - 0.098 11.3 5.2 0.24 10.0 1.1 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein DP PF08781.5 gi|156937437|ref|YP_001435233.1| - 0.1 12.2 1.0 0.19 11.4 0.1 1.7 2 0 0 2 2 2 0 Transcription factor DP MerR-DNA-bind PF09278.6 gi|156937437|ref|YP_001435233.1| - 0.11 12.9 2.1 0.39 11.1 0.1 2.2 2 0 0 2 2 2 0 MerR, DNA binding Prefoldin PF02996.12 gi|156937437|ref|YP_001435233.1| - 0.16 11.6 5.2 0.71 9.5 0.8 2.1 2 0 0 2 2 2 0 Prefoldin subunit EcoR124_C PF12008.3 gi|156937437|ref|YP_001435233.1| - 0.17 11.0 2.3 0.52 9.4 0.5 2.0 2 0 0 2 2 2 0 Type I restriction and modification enzyme - subunit R C terminal COG2 PF06148.6 gi|156937437|ref|YP_001435233.1| - 0.18 11.6 1.0 0.73 9.7 0.1 2.0 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CpXC PF14353.1 gi|156937437|ref|YP_001435233.1| - 0.19 11.6 1.6 0.36 10.7 0.3 2.0 2 1 0 2 2 2 0 CpXC protein Sec2p PF06428.6 gi|156937437|ref|YP_001435233.1| - 0.25 11.2 2.6 0.3 10.9 0.2 2.0 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p Tropomyosin_1 PF12718.2 gi|156937437|ref|YP_001435233.1| - 0.27 11.0 3.9 2.5 7.9 0.3 2.1 2 0 0 2 2 2 0 Tropomyosin like NYD-SP28 PF14772.1 gi|156937437|ref|YP_001435233.1| - 0.31 11.1 2.5 2.7 8.1 0.2 2.2 2 0 0 2 2 2 0 Sperm tail APG6 PF04111.7 gi|156937437|ref|YP_001435233.1| - 0.33 9.9 4.4 1 8.3 3.0 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 Prefoldin_2 PF01920.15 gi|156937437|ref|YP_001435233.1| - 0.38 10.5 4.5 1.8 8.3 0.5 2.4 2 0 0 2 2 2 0 Prefoldin subunit FlgN PF05130.7 gi|156937437|ref|YP_001435233.1| - 0.46 10.7 3.1 1.1 9.4 1.4 2.0 1 1 0 1 1 1 0 FlgN protein Seryl_tRNA_N PF02403.17 gi|156937437|ref|YP_001435233.1| - 0.77 9.8 4.8 0.85 9.6 0.7 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4200 PF13863.1 gi|156937437|ref|YP_001435233.1| - 0.79 9.6 5.3 3.1 7.7 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Val_tRNA-synt_C PF10458.4 gi|156937437|ref|YP_001435233.1| - 3.8 7.6 6.6 2.7 8.1 0.2 2.6 2 1 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm HMGL-like PF00682.14 gi|156937438|ref|YP_001435234.1| - 9.2e-47 159.6 0.0 1.4e-46 159.0 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|156937438|ref|YP_001435234.1| - 1.2e-25 89.8 0.0 2.3e-25 88.9 0.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Lipase_GDSL_2 PF13472.1 gi|156937438|ref|YP_001435234.1| - 0.0054 16.8 0.0 0.049 13.7 0.0 2.2 2 0 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family CbiA PF01656.18 gi|156937439|ref|YP_001435235.1| - 1.6e-06 27.7 0.0 2.6e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|156937439|ref|YP_001435235.1| - 1.9e-05 24.6 0.0 0.00015 21.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|156937439|ref|YP_001435235.1| - 0.0014 17.7 0.1 0.0076 15.3 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ VirC1 PF07015.6 gi|156937439|ref|YP_001435235.1| - 0.022 13.8 0.0 0.037 13.0 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein DUF4287 PF14117.1 gi|156937439|ref|YP_001435235.1| - 0.16 11.7 0.0 0.49 10.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4287) TrkA_C PF02080.16 gi|156937440|ref|YP_001435236.1| - 3.1e-13 49.1 0.6 5.1e-09 35.5 1.2 2.3 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|156937440|ref|YP_001435236.1| - 7.6e-09 35.9 14.3 3.3e-05 24.2 2.3 2.8 3 0 0 3 3 3 2 PhoU domain Flu_M1_C PF08289.6 gi|156937440|ref|YP_001435236.1| - 0.21 11.6 2.6 2.2 8.3 0.4 2.3 2 0 0 2 2 2 0 Influenza Matrix protein (M1) C-terminal domain F420_oxidored PF03807.12 gi|156937440|ref|YP_001435236.1| - 0.22 11.9 2.3 0.89 10.0 0.0 2.8 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent CBS PF00571.23 gi|156937441|ref|YP_001435237.1| - 8.5e-39 131.0 7.1 2.1e-11 43.3 0.0 4.3 4 0 0 4 4 4 4 CBS domain Hydrolase_6 PF13344.1 gi|156937442|ref|YP_001435238.1| - 8.9e-13 48.0 0.0 3.7e-12 46.0 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|156937442|ref|YP_001435238.1| - 2.4e-12 46.3 0.3 1.2e-11 44.1 0.0 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like PGP_phosphatase PF09419.5 gi|156937442|ref|YP_001435238.1| - 0.0058 16.0 0.1 0.0097 15.2 0.1 1.3 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase Oxidored_nitro PF00148.14 gi|156937442|ref|YP_001435238.1| - 0.016 13.8 0.1 0.022 13.4 0.1 1.3 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase DUF3903 PF13043.1 gi|156937443|ref|YP_001435239.1| - 0.11 11.9 0.1 0.26 10.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3903) RNA_pol_Rpb2_6 PF00562.23 gi|156937444|ref|YP_001435240.1| - 2.6e-126 421.4 0.0 6.6e-126 420.1 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|156937444|ref|YP_001435240.1| - 1.8e-52 177.2 0.0 2.5e-52 176.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|156937444|ref|YP_001435240.1| - 5.4e-33 114.0 0.0 1.2e-32 112.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|156937444|ref|YP_001435240.1| - 4.2e-26 90.4 0.0 8.3e-26 89.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|156937444|ref|YP_001435240.1| - 6.2e-26 90.4 0.0 1.7e-25 89.0 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|156937444|ref|YP_001435240.1| - 1.2e-17 63.4 0.2 3.5e-17 61.9 0.1 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|156937444|ref|YP_001435240.1| - 3.6e-11 42.8 0.5 8.4e-11 41.6 0.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-UBP PF02148.14 gi|156937444|ref|YP_001435240.1| - 0.099 12.7 0.8 0.2 11.7 0.6 1.4 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein PepSY PF03413.14 gi|156937444|ref|YP_001435240.1| - 3.6 8.3 5.4 3.4 8.3 0.1 3.4 5 0 0 5 5 5 0 Peptidase propeptide and YPEB domain RNA_pol_Rpb5_C PF01191.14 gi|156937445|ref|YP_001435241.1| - 2.8e-24 84.5 0.1 3e-24 84.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain SH3_1 PF00018.23 gi|156937445|ref|YP_001435241.1| - 0.0033 16.7 0.0 0.0049 16.2 0.0 1.2 1 0 0 1 1 1 1 SH3 domain Antitoxin-MazE PF04014.13 gi|156937445|ref|YP_001435241.1| - 0.01 15.5 0.2 0.021 14.5 0.1 1.6 1 0 0 1 1 1 0 Antidote-toxin recognition MazE SH3_2 PF07653.12 gi|156937445|ref|YP_001435241.1| - 0.042 13.3 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 Variant SH3 domain Maf_N PF08383.6 gi|156937445|ref|YP_001435241.1| - 0.13 11.8 0.1 0.28 10.7 0.1 1.5 1 0 0 1 1 1 0 Maf N-terminal region DUF58 PF01882.13 gi|156937446|ref|YP_001435242.1| - 7.7e-06 25.9 0.0 2.4e-05 24.3 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 CBS PF00571.23 gi|156937448|ref|YP_001435244.1| - 4.5e-31 106.3 2.1 1.8e-18 66.0 0.2 2.1 2 0 0 2 2 2 2 CBS domain BNIP3 PF06553.7 gi|156937449|ref|YP_001435245.1| - 0.085 12.2 0.3 0.085 12.2 0.2 1.0 1 0 0 1 1 1 0 BNIP3 Epiglycanin_C PF14654.1 gi|156937449|ref|YP_001435245.1| - 0.19 11.7 1.8 0.2 11.6 1.2 1.1 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region TP_methylase PF00590.15 gi|156937450|ref|YP_001435246.1| - 1.2e-21 77.4 0.0 1.4e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RHH_1 PF01402.16 gi|156937451|ref|YP_001435247.1| - 3.3e-11 42.5 0.6 3.3e-11 42.5 0.4 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|156937451|ref|YP_001435247.1| - 4.8e-05 23.4 0.2 5.3e-05 23.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|156937451|ref|YP_001435247.1| - 0.0067 16.2 1.7 0.016 15.0 1.1 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) P5CR_dimer PF14748.1 gi|156937452|ref|YP_001435248.1| - 1.2e-17 63.8 0.0 2e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|156937452|ref|YP_001435248.1| - 1e-09 38.7 0.0 2.7e-09 37.3 0.0 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|156937452|ref|YP_001435248.1| - 8.7e-09 34.9 0.0 1.4e-08 34.3 0.0 1.5 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|156937452|ref|YP_001435248.1| - 1.5e-05 24.7 0.8 0.066 12.9 0.1 2.7 3 0 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|156937452|ref|YP_001435248.1| - 2e-05 24.4 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|156937452|ref|YP_001435248.1| - 6.5e-05 22.1 0.0 0.00011 21.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|156937452|ref|YP_001435248.1| - 0.00024 20.9 0.1 0.0004 20.2 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PDH PF02153.12 gi|156937452|ref|YP_001435248.1| - 0.0037 16.1 0.1 0.0051 15.7 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_10 PF13460.1 gi|156937452|ref|YP_001435248.1| - 0.0054 16.7 0.0 0.0091 16.0 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding TrkA_N PF02254.13 gi|156937452|ref|YP_001435248.1| - 0.0097 15.9 0.0 0.021 14.8 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain Rossmann-like PF10727.4 gi|156937452|ref|YP_001435248.1| - 0.011 15.4 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain CoA_binding_2 PF13380.1 gi|156937452|ref|YP_001435248.1| - 0.017 15.2 0.4 0.043 13.9 0.1 1.8 1 1 0 1 1 1 0 CoA binding domain 3HCDH_N PF02737.13 gi|156937452|ref|YP_001435248.1| - 0.024 14.2 0.0 0.21 11.2 0.0 2.3 3 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_trans_4_4 PF13579.1 gi|156937452|ref|YP_001435248.1| - 0.033 14.3 0.7 0.12 12.5 0.1 2.0 1 1 0 2 2 2 0 Glycosyl transferase 4-like domain NAD_binding_7 PF13241.1 gi|156937452|ref|YP_001435248.1| - 0.086 13.1 0.0 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.16 gi|156937452|ref|YP_001435248.1| - 0.13 12.1 0.4 0.69 9.7 0.2 2.2 2 1 0 2 2 2 0 ThiF family PTS_EIIC_2 PF13303.1 gi|156937453|ref|YP_001435249.1| - 0.043 12.6 0.2 0.048 12.5 0.1 1.1 1 0 0 1 1 1 0 Phosphotransferase system, EIIC TraD_N PF12615.3 gi|156937453|ref|YP_001435249.1| - 0.059 13.7 0.3 0.067 13.5 0.2 1.0 1 0 0 1 1 1 0 F sex factor protein N terminal PIN PF01850.16 gi|156937454|ref|YP_001435250.1| - 0.00011 22.4 0.0 0.00014 22.2 0.0 1.1 1 0 0 1 1 1 1 PIN domain UPF0278 PF08745.6 gi|156937454|ref|YP_001435250.1| - 0.00055 19.2 0.2 0.0009 18.5 0.1 1.3 1 1 0 1 1 1 1 UPF0278 family DZR PF12773.2 gi|156937454|ref|YP_001435250.1| - 0.0019 17.9 0.9 0.0034 17.1 0.3 1.6 2 0 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|156937454|ref|YP_001435250.1| - 0.0049 16.3 1.1 0.0089 15.4 0.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain PIN_2 PF10130.4 gi|156937454|ref|YP_001435250.1| - 0.01 15.8 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 PIN domain DUF1272 PF06906.6 gi|156937454|ref|YP_001435250.1| - 0.025 14.4 2.9 0.057 13.2 1.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|156937454|ref|YP_001435250.1| - 0.14 12.0 2.1 0.85 9.6 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|156937454|ref|YP_001435250.1| - 0.23 11.2 1.4 2 8.2 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|156937454|ref|YP_001435250.1| - 0.34 10.2 2.5 0.6 9.4 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|156937454|ref|YP_001435250.1| - 0.82 9.4 8.7 0.5 10.1 3.9 2.2 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|156937454|ref|YP_001435250.1| - 1.9 7.7 7.4 8.7 5.6 5.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain CYTH PF01928.16 gi|156937455|ref|YP_001435251.1| - 1.1e-05 25.1 0.0 1.4e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 CYTH domain PUB PF09409.5 gi|156937455|ref|YP_001435251.1| - 0.029 14.1 0.3 2.6 7.8 0.0 2.6 3 0 0 3 3 3 0 PUB domain B5 PF03484.10 gi|156937455|ref|YP_001435251.1| - 0.03 14.1 0.1 3.7 7.4 0.0 3.3 3 1 1 4 4 4 0 tRNA synthetase B5 domain DUF3940 PF13076.1 gi|156937455|ref|YP_001435251.1| - 0.049 13.1 0.2 0.092 12.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3940) Peptidase_M20 PF01546.23 gi|156937457|ref|YP_001435253.1| - 2.9e-20 72.5 0.0 4.3e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|156937457|ref|YP_001435253.1| - 9.6e-16 57.5 0.0 5.7e-15 55.0 0.0 2.1 3 0 0 3 3 3 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|156937457|ref|YP_001435253.1| - 0.0035 17.1 0.0 0.0052 16.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Cas_APE2256 PF09651.5 gi|156937458|ref|YP_001435254.1| - 7.7e-35 119.5 0.2 1.6e-34 118.5 0.0 1.6 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_APE2256) DUF3356 PF11836.3 gi|156937458|ref|YP_001435254.1| - 0.02 14.6 0.1 0.042 13.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3356) HrpJ PF07201.6 gi|156937458|ref|YP_001435254.1| - 0.078 12.9 1.0 0.15 12.0 0.7 1.4 1 0 0 1 1 1 0 HrpJ-like domain CHIPS PF11434.3 gi|156937458|ref|YP_001435254.1| - 0.096 12.3 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Chemotaxis-inhibiting protein CHIPS DUF892 PF05974.7 gi|156937459|ref|YP_001435255.1| - 0.0038 17.0 1.0 0.0047 16.7 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF892) FlgN PF05130.7 gi|156937459|ref|YP_001435255.1| - 0.0042 17.3 0.6 0.0048 17.1 0.4 1.2 1 0 0 1 1 1 1 FlgN protein Bacillus_HBL PF05791.6 gi|156937459|ref|YP_001435255.1| - 0.0051 16.2 1.4 0.0069 15.7 0.9 1.2 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) Cytochrom_C552 PF02335.10 gi|156937459|ref|YP_001435255.1| - 0.0077 14.9 0.2 0.0088 14.7 0.1 1.0 1 0 0 1 1 1 1 Cytochrome c552 Cluap1 PF10234.4 gi|156937459|ref|YP_001435255.1| - 0.0095 15.1 2.3 0.011 15.0 1.6 1.1 1 0 0 1 1 1 1 Clusterin-associated protein-1 zf-C4H2 PF10146.4 gi|156937459|ref|YP_001435255.1| - 0.012 15.5 1.4 0.014 15.4 1.0 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein Apolipoprotein PF01442.13 gi|156937459|ref|YP_001435255.1| - 0.02 14.3 2.1 0.034 13.6 1.5 1.5 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain GatB_Yqey PF02637.13 gi|156937459|ref|YP_001435255.1| - 0.021 14.5 2.8 0.051 13.2 1.7 1.8 1 1 1 2 2 2 0 GatB domain FH2 PF02181.18 gi|156937459|ref|YP_001435255.1| - 0.029 13.2 1.4 0.032 13.1 1.0 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain THP2 PF09432.5 gi|156937459|ref|YP_001435255.1| - 0.032 14.0 2.6 0.43 10.4 1.8 2.0 1 1 0 1 1 1 0 Tho complex subunit THP2 MIT PF04212.13 gi|156937459|ref|YP_001435255.1| - 0.077 12.8 1.2 0.18 11.7 0.7 1.8 1 1 0 1 1 1 0 MIT (microtubule interacting and transport) domain IncA PF04156.9 gi|156937459|ref|YP_001435255.1| - 0.099 12.2 0.7 0.12 11.9 0.5 1.2 1 0 0 1 1 1 0 IncA protein DUF342 PF03961.8 gi|156937459|ref|YP_001435255.1| - 0.11 10.8 2.3 0.11 10.9 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Borrelia_orfA PF02414.10 gi|156937459|ref|YP_001435255.1| - 0.12 11.4 1.2 0.15 11.1 0.8 1.2 1 0 0 1 1 1 0 Borrelia ORF-A DMPK_coil PF08826.5 gi|156937459|ref|YP_001435255.1| - 0.12 12.2 3.8 3.4 7.6 1.5 2.9 2 1 0 2 2 2 0 DMPK coiled coil domain like ATP-cone PF03477.11 gi|156937459|ref|YP_001435255.1| - 0.14 12.6 1.7 1.1 9.7 0.2 2.4 2 1 0 2 2 2 0 ATP cone domain Mod_r PF07200.8 gi|156937459|ref|YP_001435255.1| - 0.14 12.0 3.8 0.74 9.7 0.7 1.9 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF2229 PF09989.4 gi|156937459|ref|YP_001435255.1| - 0.14 11.5 0.5 0.15 11.5 0.4 1.2 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) Complex1_LYR_1 PF13232.1 gi|156937459|ref|YP_001435255.1| - 0.27 11.4 1.6 6.5 7.0 1.1 2.4 1 1 0 1 1 1 0 Complex1_LYR-like APG6 PF04111.7 gi|156937459|ref|YP_001435255.1| - 0.31 10.0 2.8 0.33 9.9 2.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 YfcL PF08891.6 gi|156937459|ref|YP_001435255.1| - 0.35 10.8 1.7 1.6 8.7 0.1 2.3 1 1 1 2 2 2 0 YfcL protein DUF883 PF05957.8 gi|156937459|ref|YP_001435255.1| - 0.35 11.2 2.4 1.7 9.1 0.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4200 PF13863.1 gi|156937459|ref|YP_001435255.1| - 0.4 10.6 6.2 0.9 9.4 4.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) ATP-synt_B PF00430.13 gi|156937459|ref|YP_001435255.1| - 0.4 10.4 4.4 0.44 10.3 2.2 1.5 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Osmo_CC PF08946.5 gi|156937459|ref|YP_001435255.1| - 0.46 10.5 4.4 4.7 7.3 0.1 2.7 1 1 0 2 2 2 0 Osmosensory transporter coiled coil DUF3800 PF12686.2 gi|156937460|ref|YP_001435256.1| - 1.2e-06 28.3 0.0 5.1e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) Pox_Ag35 PF03286.9 gi|156937460|ref|YP_001435256.1| - 0.078 12.4 0.2 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Pox virus Ag35 surface protein DUF1890 PF09001.6 gi|156937460|ref|YP_001435256.1| - 0.084 12.8 0.1 1.1 9.2 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1890) YniB PF14002.1 gi|156937462|ref|YP_001435258.1| - 0.11 11.8 4.1 0.075 12.4 1.3 1.8 2 0 0 2 2 2 0 YniB-like protein DUF1628 PF07790.6 gi|156937463|ref|YP_001435259.1| - 0.097 13.4 5.0 0.33 11.7 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) Pyr_redox_2 PF07992.9 gi|156937464|ref|YP_001435260.1| - 3.6e-39 134.7 7.6 6.9e-38 130.5 5.3 3.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|156937464|ref|YP_001435260.1| - 3.5e-22 78.6 11.2 7.3e-18 64.7 1.4 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|156937464|ref|YP_001435260.1| - 8.4e-19 67.6 0.1 3.2e-18 65.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|156937464|ref|YP_001435260.1| - 2.8e-18 66.7 0.8 3.7e-11 43.4 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|156937464|ref|YP_001435260.1| - 3.2e-16 59.1 9.7 2.7e-06 26.5 0.1 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|156937464|ref|YP_001435260.1| - 7.9e-11 41.0 3.7 0.01 14.3 0.1 4.1 4 0 0 4 4 4 4 HI0933-like protein FAD_binding_2 PF00890.19 gi|156937464|ref|YP_001435260.1| - 4.8e-09 35.5 15.1 0.0037 16.1 0.2 5.6 4 1 2 6 6 6 3 FAD binding domain NAD_binding_9 PF13454.1 gi|156937464|ref|YP_001435260.1| - 5.3e-09 36.0 6.9 0.12 12.1 0.2 4.2 3 1 1 4 4 4 3 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|156937464|ref|YP_001435260.1| - 1.1e-08 34.4 2.3 0.03 13.2 0.0 3.2 2 1 1 3 3 3 3 Lycopene cyclase protein K_oxygenase PF13434.1 gi|156937464|ref|YP_001435260.1| - 5.7e-08 32.0 1.0 4.1e-07 29.2 0.0 2.5 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|156937464|ref|YP_001435260.1| - 6.7e-08 31.7 10.4 0.033 13.0 0.1 4.2 3 1 1 4 4 4 3 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|156937464|ref|YP_001435260.1| - 3e-07 30.3 2.6 0.0013 18.6 0.1 3.1 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|156937464|ref|YP_001435260.1| - 0.00066 18.8 2.2 0.12 11.4 0.1 3.0 3 0 0 3 3 3 1 Thi4 family TrkA_N PF02254.13 gi|156937464|ref|YP_001435260.1| - 0.0022 17.9 0.2 0.83 9.6 0.0 2.8 2 0 0 2 2 2 1 TrkA-N domain Trp_halogenase PF04820.9 gi|156937464|ref|YP_001435260.1| - 0.0096 14.5 5.2 0.061 11.9 0.2 3.0 3 0 0 3 3 3 1 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|156937464|ref|YP_001435260.1| - 0.011 14.8 1.7 1.2 8.1 0.2 2.4 2 0 0 2 2 2 0 FAD binding domain IlvN PF07991.7 gi|156937464|ref|YP_001435260.1| - 0.017 14.4 0.2 0.14 11.5 0.0 2.4 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|156937464|ref|YP_001435260.1| - 0.028 14.1 0.3 0.84 9.3 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|156937464|ref|YP_001435260.1| - 0.029 13.8 0.7 0.053 12.9 0.0 1.9 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|156937464|ref|YP_001435260.1| - 0.043 13.3 0.6 0.77 9.3 0.1 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|156937464|ref|YP_001435260.1| - 0.072 13.1 1.6 0.46 10.5 0.1 2.5 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|156937464|ref|YP_001435260.1| - 0.093 12.7 1.6 0.12 12.3 0.0 2.0 3 0 0 3 3 1 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|156937464|ref|YP_001435260.1| - 0.14 11.8 2.9 0.14 11.7 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|156937464|ref|YP_001435260.1| - 0.18 10.8 3.3 0.69 8.9 0.3 2.5 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.1 gi|156937464|ref|YP_001435260.1| - 1.4 9.2 6.8 2.5 8.3 0.3 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|156937464|ref|YP_001435260.1| - 1.5 7.7 11.3 0.58 9.1 0.3 3.3 3 1 1 4 4 4 0 FAD dependent oxidoreductase DUF1641 PF07849.6 gi|156937465|ref|YP_001435261.1| - 4.1e-16 58.3 2.3 1e-15 57.0 0.6 2.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1641) DUF2435 PF10363.4 gi|156937465|ref|YP_001435261.1| - 0.11 12.3 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2435) Ldh_1_C PF02866.13 gi|156937465|ref|YP_001435261.1| - 0.13 11.9 0.6 0.33 10.6 0.2 1.6 1 1 1 2 2 2 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain ATPgrasp_ST PF14397.1 gi|156937465|ref|YP_001435261.1| - 0.15 11.1 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Acyl-CoA_dh_C PF12806.2 gi|156937465|ref|YP_001435261.1| - 1.2 8.9 5.7 0.49 10.2 1.2 2.1 1 1 1 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Pyr_redox_2 PF07992.9 gi|156937466|ref|YP_001435262.1| - 8.1e-09 35.6 0.0 1.6e-08 34.6 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|156937466|ref|YP_001435262.1| - 0.019 14.7 0.0 12 5.6 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Sua5_yciO_yrdC PF01300.13 gi|156937467|ref|YP_001435263.1| - 1e-39 135.6 0.0 1.6e-39 135.0 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|156937467|ref|YP_001435263.1| - 1.5e-28 97.8 12.2 1.2e-14 53.4 1.8 2.3 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|156937467|ref|YP_001435263.1| - 2.2e-21 75.7 0.0 3.8e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.20 gi|156937467|ref|YP_001435263.1| - 0.031 13.7 0.0 2.8 7.3 0.0 2.2 2 0 0 2 2 2 0 Glycoprotease family RIO1 PF01163.17 gi|156937468|ref|YP_001435264.1| - 3.5e-60 202.6 0.1 6e-60 201.8 0.1 1.4 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|156937468|ref|YP_001435264.1| - 1.3e-07 30.9 0.1 3.2e-07 29.6 0.1 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|156937468|ref|YP_001435264.1| - 3.2e-05 23.7 0.0 0.0026 17.5 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Ribonuc_red_lgN PF00317.16 gi|156937468|ref|YP_001435264.1| - 0.0065 16.2 0.0 0.026 14.2 0.0 2.0 1 1 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Flag1_repress PF03614.8 gi|156937468|ref|YP_001435264.1| - 0.014 14.9 0.1 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 Repressor of phase-1 flagellin eIF-1a PF01176.14 gi|156937469|ref|YP_001435265.1| - 1.2e-16 59.8 0.4 1.7e-16 59.3 0.3 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Antitoxin-MazE PF04014.13 gi|156937469|ref|YP_001435265.1| - 0.61 9.8 3.2 11 5.8 0.4 2.5 2 0 0 2 2 2 0 Antidote-toxin recognition MazE HTH_17 PF12728.2 gi|156937469|ref|YP_001435265.1| - 0.93 9.7 4.8 7.1 6.9 0.5 3.1 2 1 1 3 3 3 0 Helix-turn-helix domain Ribosomal_S6e PF01092.14 gi|156937470|ref|YP_001435266.1| - 1.5e-31 108.6 2.0 2e-31 108.2 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S6e S1 PF00575.18 gi|156937470|ref|YP_001435266.1| - 0.029 14.4 1.1 24 5.0 0.1 3.4 2 1 1 3 3 3 0 S1 RNA binding domain Fumerase PF05681.9 gi|156937471|ref|YP_001435267.1| - 9.8e-82 274.0 0.0 1.3e-81 273.6 0.0 1.2 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|156937471|ref|YP_001435267.1| - 3.9e-59 199.2 0.0 5.6e-59 198.7 0.0 1.2 1 0 0 1 1 1 1 Fumarase C-terminus ATP-synt_ab PF00006.20 gi|156937472|ref|YP_001435268.1| - 2e-62 210.5 0.0 2.7e-62 210.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|156937472|ref|YP_001435268.1| - 7e-17 61.9 0.2 1.2e-16 61.1 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|156937472|ref|YP_001435268.1| - 2.3e-11 43.7 2.7 2.3e-11 43.7 1.9 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|156937472|ref|YP_001435268.1| - 0.0001 22.1 1.6 0.0003 20.6 1.1 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|156937473|ref|YP_001435269.1| - 1.1e-49 168.6 9.6 1.2e-49 168.5 6.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D TPR_12 PF13424.1 gi|156937473|ref|YP_001435269.1| - 0.086 12.7 3.1 8.4 6.4 0.4 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|156937473|ref|YP_001435269.1| - 0.15 12.7 0.9 17 6.4 0.0 3.4 2 1 1 3 3 3 0 Tetratricopeptide repeat FAT PF02259.18 gi|156937473|ref|YP_001435269.1| - 0.27 10.1 3.0 0.11 11.4 0.4 1.5 2 0 0 2 2 2 0 FAT domain DUF2524 PF10732.4 gi|156937473|ref|YP_001435269.1| - 3 8.0 9.3 0.66 10.1 0.4 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF2524) ATP-synt_C PF00137.16 gi|156937475|ref|YP_001435271.1| - 3.7e-16 58.7 15.5 3.7e-16 58.7 10.7 2.1 1 1 1 2 2 2 1 ATP synthase subunit C Yip1 PF04893.12 gi|156937475|ref|YP_001435271.1| - 0.0048 16.4 9.6 0.0051 16.3 6.7 1.0 1 0 0 1 1 1 1 Yip1 domain Aminotran_3 PF00202.16 gi|156937476|ref|YP_001435272.1| - 6.2e-72 242.2 0.0 9.8e-72 241.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|156937476|ref|YP_001435272.1| - 0.00029 19.8 0.0 0.00081 18.4 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Porphobil_deam PF01379.15 gi|156937477|ref|YP_001435273.1| - 2.8e-62 209.4 0.0 3.6e-62 209.0 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|156937477|ref|YP_001435273.1| - 2.9e-12 46.4 0.4 6.1e-12 45.4 0.3 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|156937477|ref|YP_001435273.1| - 0.16 11.1 0.2 3.8 6.6 0.1 2.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 ASCH PF04266.9 gi|156937478|ref|YP_001435274.1| - 1.8e-16 60.4 0.1 3.3e-16 59.5 0.1 1.4 1 0 0 1 1 1 1 ASCH domain AdoMet_dc PF02675.10 gi|156937479|ref|YP_001435275.1| - 9.6e-35 118.6 0.0 1.1e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.1 gi|156937479|ref|YP_001435275.1| - 0.042 13.5 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Stage VI sporulation protein F VitK2_biosynth PF02621.9 gi|156937480|ref|YP_001435276.1| - 8.9e-16 57.8 0.0 1.1e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis DUF2911 PF11138.3 gi|156937481|ref|YP_001435277.1| - 0.029 14.0 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2911) Img2 PF05046.9 gi|156937481|ref|YP_001435277.1| - 0.06 13.5 1.3 0.39 10.9 0.1 2.6 2 1 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) DUF1396 PF07161.8 gi|156937481|ref|YP_001435277.1| - 0.093 12.3 0.2 0.41 10.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1396) Creatininase PF02633.9 gi|156937482|ref|YP_001435278.1| - 2.5e-61 206.8 0.0 2.9e-61 206.5 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DNA_pol_B PF00136.16 gi|156937483|ref|YP_001435279.1| - 6.8e-90 302.0 4.2 9.8e-90 301.5 2.9 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|156937483|ref|YP_001435279.1| - 1.3e-30 106.4 1.8 2.5e-30 105.4 1.2 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|156937483|ref|YP_001435279.1| - 5.6e-05 23.0 0.6 0.00023 21.0 0.4 2.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|156937483|ref|YP_001435279.1| - 0.0001 21.9 0.1 0.00027 20.5 0.0 1.7 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF1045 PF06299.7 gi|156937483|ref|YP_001435279.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1045) XPG_I PF00867.13 gi|156937484|ref|YP_001435280.1| - 7.1e-28 96.5 0.0 1.6e-27 95.4 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|156937484|ref|YP_001435280.1| - 3.9e-21 75.1 0.0 7.6e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|156937484|ref|YP_001435280.1| - 3.4e-06 27.2 0.9 9.9e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF2458 PF10454.4 gi|156937484|ref|YP_001435280.1| - 0.004 17.0 2.8 0.052 13.4 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2458) DUF1771 PF08590.5 gi|156937484|ref|YP_001435280.1| - 0.032 14.2 4.1 0.032 14.2 2.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Lumazine_bd PF12870.2 gi|156937484|ref|YP_001435280.1| - 0.052 13.5 0.3 0.052 13.5 0.2 1.7 2 0 0 2 2 2 0 Lumazine-binding domain DUF106 PF01956.11 gi|156937484|ref|YP_001435280.1| - 0.062 12.8 0.2 0.11 12.0 0.2 1.3 1 0 0 1 1 1 0 Integral membrane protein DUF106 GIDA PF01134.17 gi|156937484|ref|YP_001435280.1| - 0.078 11.8 0.2 0.16 10.7 0.0 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF4355 PF14265.1 gi|156937484|ref|YP_001435280.1| - 1.3 8.9 13.1 4.6 7.2 4.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) TPR_2 PF07719.12 gi|156937484|ref|YP_001435280.1| - 1.5 8.9 4.5 33 4.7 0.0 3.2 1 1 1 2 2 2 0 Tetratricopeptide repeat RNA_pol_Rpc34 PF05158.7 gi|156937485|ref|YP_001435281.1| - 0.004 16.3 0.2 0.0042 16.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit FUR PF01475.14 gi|156937485|ref|YP_001435281.1| - 0.031 14.2 0.2 0.045 13.6 0.1 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family AAA PF00004.24 gi|156937486|ref|YP_001435282.1| - 2.6e-98 325.3 0.0 5.7e-49 165.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|156937486|ref|YP_001435282.1| - 5e-31 106.5 2.9 1.4e-30 105.0 0.6 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|156937486|ref|YP_001435282.1| - 2e-17 62.5 3.2 3e-17 62.0 0.8 2.3 1 1 1 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|156937486|ref|YP_001435282.1| - 5.3e-16 59.0 0.0 3.8e-08 33.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|156937486|ref|YP_001435282.1| - 1.4e-14 53.6 0.0 7.5e-08 31.7 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|156937486|ref|YP_001435282.1| - 3.1e-14 53.3 0.0 7.9e-07 29.2 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|156937486|ref|YP_001435282.1| - 6.8e-14 52.1 0.0 1.6e-05 25.0 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|156937486|ref|YP_001435282.1| - 4.5e-13 49.1 0.6 2.2e-05 24.2 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|156937486|ref|YP_001435282.1| - 7.4e-13 48.5 0.0 7.1e-06 25.9 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|156937486|ref|YP_001435282.1| - 2.9e-12 46.6 0.0 4.7e-06 26.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|156937486|ref|YP_001435282.1| - 2.7e-11 44.3 0.0 1.5e-05 25.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|156937486|ref|YP_001435282.1| - 3.5e-11 42.4 0.0 8.9e-05 21.3 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|156937486|ref|YP_001435282.1| - 5.9e-10 38.5 0.0 0.00014 21.0 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|156937486|ref|YP_001435282.1| - 3.6e-09 37.0 0.0 0.00064 20.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|156937486|ref|YP_001435282.1| - 4.3e-09 36.0 1.1 0.0016 17.9 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|156937486|ref|YP_001435282.1| - 6.6e-08 32.6 0.0 0.00061 19.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|156937486|ref|YP_001435282.1| - 9.3e-08 31.4 0.6 0.0035 16.5 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|156937486|ref|YP_001435282.1| - 1.2e-07 31.3 6.7 0.047 13.0 0.1 4.2 2 2 1 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|156937486|ref|YP_001435282.1| - 1.3e-07 31.2 1.5 0.021 14.5 0.0 3.1 3 0 0 3 3 2 2 Part of AAA domain RNA_helicase PF00910.17 gi|156937486|ref|YP_001435282.1| - 3.5e-07 30.3 0.0 0.0062 16.6 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Arch_ATPase PF01637.13 gi|156937486|ref|YP_001435282.1| - 1.3e-06 28.2 0.0 0.015 15.0 0.0 3.6 2 2 2 4 4 4 1 Archaeal ATPase ABC_tran PF00005.22 gi|156937486|ref|YP_001435282.1| - 1.8e-06 28.2 0.0 0.05 13.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|156937486|ref|YP_001435282.1| - 4.5e-06 26.2 0.1 0.18 11.2 0.0 3.7 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|156937486|ref|YP_001435282.1| - 6.4e-06 25.5 0.2 0.072 12.3 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.1 gi|156937486|ref|YP_001435282.1| - 6.6e-06 25.8 0.0 0.083 12.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|156937486|ref|YP_001435282.1| - 8.5e-06 25.8 0.0 0.095 12.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|156937486|ref|YP_001435282.1| - 9.6e-06 25.3 0.2 0.044 13.4 0.0 3.8 3 1 1 4 4 4 1 NACHT domain AAA_3 PF07726.6 gi|156937486|ref|YP_001435282.1| - 2.9e-05 23.6 0.0 0.036 13.6 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|156937486|ref|YP_001435282.1| - 3.8e-05 22.7 0.0 0.16 10.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|156937486|ref|YP_001435282.1| - 4.4e-05 23.0 0.0 0.17 11.3 0.0 2.5 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|156937486|ref|YP_001435282.1| - 5.1e-05 22.8 0.0 0.14 11.7 0.0 3.4 3 0 0 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|156937486|ref|YP_001435282.1| - 8.2e-05 22.3 0.5 1.4 8.5 0.0 4.0 2 2 2 4 4 3 1 NTPase KaiC PF06745.8 gi|156937486|ref|YP_001435282.1| - 0.00019 20.6 3.9 0.78 8.8 0.0 4.1 2 2 1 4 4 4 2 KaiC Parvo_NS1 PF01057.12 gi|156937486|ref|YP_001435282.1| - 0.00034 19.5 0.1 0.11 11.3 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|156937486|ref|YP_001435282.1| - 0.00056 18.9 0.0 0.26 10.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|156937486|ref|YP_001435282.1| - 0.00059 19.4 0.0 0.72 9.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|156937486|ref|YP_001435282.1| - 0.00081 18.3 0.0 0.42 9.4 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|156937486|ref|YP_001435282.1| - 0.00088 18.9 0.0 0.17 11.4 0.0 3.0 2 2 0 2 2 2 1 Bacterial dnaA protein Vps4_C PF09336.5 gi|156937486|ref|YP_001435282.1| - 0.001 18.9 0.1 0.034 14.0 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_30 PF13604.1 gi|156937486|ref|YP_001435282.1| - 0.0018 17.8 0.0 2.7 7.5 0.0 2.8 3 0 0 3 3 2 0 AAA domain SKI PF01202.17 gi|156937486|ref|YP_001435282.1| - 0.0025 17.7 0.0 0.92 9.3 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase AFG1_ATPase PF03969.11 gi|156937486|ref|YP_001435282.1| - 0.0035 16.2 0.0 1.1 8.0 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase ResIII PF04851.10 gi|156937486|ref|YP_001435282.1| - 0.0036 17.1 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|156937486|ref|YP_001435282.1| - 0.0038 16.7 0.9 2 7.8 0.0 3.3 2 2 0 3 3 3 1 AAA-like domain NB-ARC PF00931.17 gi|156937486|ref|YP_001435282.1| - 0.0052 15.6 0.0 1.2 7.8 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain KTI12 PF08433.5 gi|156937486|ref|YP_001435282.1| - 0.0052 16.0 0.0 0.46 9.6 0.0 2.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 Guanylate_kin PF00625.16 gi|156937486|ref|YP_001435282.1| - 0.0087 15.5 0.5 4.9 6.5 0.0 3.7 2 2 2 4 4 4 0 Guanylate kinase Viral_helicase1 PF01443.13 gi|156937486|ref|YP_001435282.1| - 0.013 15.0 0.0 1.2 8.5 0.0 2.5 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase PduV-EutP PF10662.4 gi|156937486|ref|YP_001435282.1| - 0.043 13.2 0.0 3 7.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation UFD1 PF03152.9 gi|156937486|ref|YP_001435282.1| - 0.057 12.5 0.0 0.82 8.7 0.0 2.4 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 AAA_29 PF13555.1 gi|156937486|ref|YP_001435282.1| - 0.078 12.5 0.0 12 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.14 gi|156937486|ref|YP_001435282.1| - 0.092 12.1 0.1 18 4.7 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|156937486|ref|YP_001435282.1| - 0.12 11.8 0.3 31 3.9 0.0 3.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|156937486|ref|YP_001435282.1| - 0.12 12.2 0.0 5.3 7.0 0.0 2.7 2 2 0 2 2 2 0 50S ribosome-binding GTPase KAP_NTPase PF07693.9 gi|156937486|ref|YP_001435282.1| - 0.17 10.8 0.0 45 2.8 0.0 2.9 2 1 1 3 3 3 0 KAP family P-loop domain AAA_23 PF13476.1 gi|156937486|ref|YP_001435282.1| - 0.2 11.9 0.1 8.5 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF126 PF01989.11 gi|156937487|ref|YP_001435283.1| - 1.2e-26 92.2 0.0 2.2e-26 91.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|156937488|ref|YP_001435284.1| - 2.7e-110 368.6 0.0 3e-110 368.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CbiK PF06180.6 gi|156937488|ref|YP_001435284.1| - 0.018 14.1 0.0 0.026 13.5 0.0 1.2 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) TIM PF00121.13 gi|156937489|ref|YP_001435285.1| - 2e-27 95.8 0.1 6.6e-25 87.5 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|156937489|ref|YP_001435285.1| - 4.9e-09 35.6 0.3 8.1e-09 34.9 0.2 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|156937489|ref|YP_001435285.1| - 2.1e-07 29.7 2.8 7.8e-07 27.8 0.3 2.4 3 0 0 3 3 3 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|156937489|ref|YP_001435285.1| - 5.4e-06 25.8 3.1 2.1e-05 23.9 0.3 2.1 1 1 1 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|156937489|ref|YP_001435285.1| - 1.8e-05 24.1 0.2 4.1e-05 22.9 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|156937489|ref|YP_001435285.1| - 3.1e-05 22.9 1.6 4.9e-05 22.3 1.1 1.2 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.10 gi|156937489|ref|YP_001435285.1| - 0.015 14.4 0.6 0.019 14.1 0.4 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase IGPS PF00218.16 gi|156937489|ref|YP_001435285.1| - 0.043 12.8 0.0 0.072 12.1 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|156937489|ref|YP_001435285.1| - 0.049 12.6 0.2 0.062 12.2 0.2 1.4 1 1 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase AAA_11 PF13086.1 gi|156937489|ref|YP_001435285.1| - 0.14 11.7 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain SBDS PF01172.13 gi|156937490|ref|YP_001435286.1| - 1.3e-28 98.6 0.2 2.2e-28 97.8 0.2 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|156937490|ref|YP_001435286.1| - 4.3e-21 74.9 1.4 7.1e-21 74.2 0.9 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|156937490|ref|YP_001435286.1| - 4.4e-05 23.2 0.1 0.00021 21.1 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G C-terminus Mei4 PF13971.1 gi|156937490|ref|YP_001435286.1| - 0.058 12.3 0.1 0.097 11.6 0.1 1.3 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 DUF627 PF04781.7 gi|156937490|ref|YP_001435286.1| - 0.092 12.3 0.0 8.8 5.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF627) Radical_SAM PF04055.16 gi|156937491|ref|YP_001435287.1| - 8.2e-29 100.9 1.2 8.5e-29 100.8 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|156937491|ref|YP_001435287.1| - 1.6e-23 82.7 0.0 2.4e-23 82.1 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|156937491|ref|YP_001435287.1| - 3.9e-09 36.7 0.1 8.4e-09 35.6 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|156937491|ref|YP_001435287.1| - 1e-08 35.1 0.0 2.3e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SpoU_sub_bind PF08032.7 gi|156937491|ref|YP_001435287.1| - 0.27 11.4 1.3 1 9.5 0.1 2.5 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding DUF95 PF01944.12 gi|156937492|ref|YP_001435288.1| - 0.007 16.0 1.8 0.007 16.0 1.2 2.9 2 1 0 2 2 2 1 Integral membrane protein DUF95 7TM-7TMR_HD PF07698.6 gi|156937492|ref|YP_001435288.1| - 0.07 12.5 5.1 0.09 12.2 3.6 1.2 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase V4R PF02830.13 gi|156937494|ref|YP_001435290.1| - 3.5e-07 29.9 0.1 6.2e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 V4R domain Fe_dep_repress PF01325.14 gi|156937495|ref|YP_001435291.1| - 2.9e-15 55.9 0.8 6e-15 54.9 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|156937495|ref|YP_001435291.1| - 4.4e-14 51.9 2.6 6.7e-14 51.3 1.8 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.2 gi|156937495|ref|YP_001435291.1| - 1.9e-06 27.4 0.0 3.5e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|156937495|ref|YP_001435291.1| - 1.1e-05 24.8 0.0 2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|156937495|ref|YP_001435291.1| - 6.2e-05 23.2 0.0 0.00012 22.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|156937495|ref|YP_001435291.1| - 6.4e-05 22.2 0.0 0.00014 21.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|156937495|ref|YP_001435291.1| - 0.00012 21.6 0.0 0.00039 20.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|156937495|ref|YP_001435291.1| - 0.00013 21.7 0.2 0.00024 20.8 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.4 gi|156937495|ref|YP_001435291.1| - 0.00016 21.8 0.3 0.00042 20.5 0.2 1.8 1 1 1 2 2 2 1 C-terminal AAA-associated domain HemN_C PF06969.11 gi|156937495|ref|YP_001435291.1| - 0.0012 18.8 0.0 0.0029 17.6 0.0 1.7 1 0 0 1 1 1 1 HemN C-terminal domain DUF2250 PF10007.4 gi|156937495|ref|YP_001435291.1| - 0.0027 17.5 0.2 0.0065 16.3 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_40 PF14493.1 gi|156937495|ref|YP_001435291.1| - 0.0032 17.6 0.1 0.036 14.2 0.0 2.1 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|156937495|ref|YP_001435291.1| - 0.0042 16.8 0.0 0.0065 16.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|156937495|ref|YP_001435291.1| - 0.0042 17.1 0.0 0.007 16.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.1 gi|156937495|ref|YP_001435291.1| - 0.0042 17.2 0.0 0.0083 16.2 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.14 gi|156937495|ref|YP_001435291.1| - 0.0051 16.4 0.8 0.015 15.0 0.1 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|156937495|ref|YP_001435291.1| - 0.0064 16.0 0.0 0.016 14.7 0.0 1.7 2 0 0 2 2 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|156937495|ref|YP_001435291.1| - 0.009 15.7 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|156937495|ref|YP_001435291.1| - 0.013 15.5 0.0 0.023 14.6 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain DUF3723 PF12520.3 gi|156937495|ref|YP_001435291.1| - 0.015 13.7 0.1 0.018 13.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3723) ScdA_N PF04405.9 gi|156937495|ref|YP_001435291.1| - 0.017 14.5 0.0 0.05 13.0 0.0 1.8 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) HTH_1 PF00126.22 gi|156937495|ref|YP_001435291.1| - 0.019 14.7 0.0 0.084 12.6 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TFIIE_alpha PF02002.12 gi|156937495|ref|YP_001435291.1| - 0.023 14.1 0.3 0.074 12.5 0.2 2.0 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_23 PF13384.1 gi|156937495|ref|YP_001435291.1| - 0.025 14.2 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|156937495|ref|YP_001435291.1| - 0.026 14.2 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 MarR family IF2_N PF04760.10 gi|156937495|ref|YP_001435291.1| - 0.081 12.5 0.8 0.57 9.8 0.0 2.7 3 1 1 4 4 4 0 Translation initiation factor IF-2, N-terminal region HTH_30 PF13556.1 gi|156937495|ref|YP_001435291.1| - 0.1 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Terminase_5 PF06056.7 gi|156937495|ref|YP_001435291.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_Tnp_1 PF01527.15 gi|156937495|ref|YP_001435291.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Transposase DUF77 PF01910.12 gi|156937496|ref|YP_001435292.1| - 1.4e-23 82.3 0.3 1.6e-23 82.1 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Pribosyltran PF00156.22 gi|156937497|ref|YP_001435293.1| - 1.1e-19 70.4 0.3 1.5e-19 69.9 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|156937497|ref|YP_001435293.1| - 0.00011 21.5 0.0 0.00015 21.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|156937497|ref|YP_001435293.1| - 0.025 13.8 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Pyr_redox_2 PF07992.9 gi|156937498|ref|YP_001435294.1| - 9.7e-10 38.6 0.0 1.4e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|156937498|ref|YP_001435294.1| - 3.5e-09 36.5 0.0 8.2e-09 35.3 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|156937498|ref|YP_001435294.1| - 2.8e-08 33.2 0.0 3.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|156937498|ref|YP_001435294.1| - 1.7e-07 30.0 0.1 1.8e-06 26.7 0.0 2.4 2 1 0 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|156937498|ref|YP_001435294.1| - 6.7e-07 28.5 0.0 2.1e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|156937498|ref|YP_001435294.1| - 6.7e-07 28.6 0.0 1.4e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|156937498|ref|YP_001435294.1| - 2.1e-05 23.5 0.2 5.8e-05 22.1 0.1 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|156937498|ref|YP_001435294.1| - 3.3e-05 22.9 0.0 0.12 11.2 0.0 2.5 3 0 0 3 3 3 2 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|156937498|ref|YP_001435294.1| - 4.9e-05 23.4 0.1 0.00013 22.1 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|156937498|ref|YP_001435294.1| - 8.9e-05 21.5 0.0 0.00013 20.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|156937498|ref|YP_001435294.1| - 9.2e-05 21.6 0.1 0.00027 20.0 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|156937498|ref|YP_001435294.1| - 0.001 19.4 0.0 0.0057 17.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|156937498|ref|YP_001435294.1| - 0.066 11.8 0.0 0.62 8.6 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase HTH_AsnC-type PF13404.1 gi|156937499|ref|YP_001435295.1| - 1.1e-15 56.8 0.6 1.1e-15 56.8 0.4 1.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|156937499|ref|YP_001435295.1| - 4.7e-15 55.0 0.6 8.3e-15 54.2 0.4 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|156937499|ref|YP_001435295.1| - 3.1e-13 48.8 0.9 5.8e-13 48.0 0.7 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|156937499|ref|YP_001435295.1| - 8.8e-08 31.6 1.9 1.3e-07 31.1 0.2 2.1 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.2 gi|156937499|ref|YP_001435295.1| - 0.00025 20.7 0.2 0.0063 16.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|156937499|ref|YP_001435295.1| - 0.0017 17.8 0.9 0.0052 16.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|156937499|ref|YP_001435295.1| - 0.0042 17.3 0.1 0.019 15.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|156937499|ref|YP_001435295.1| - 0.022 14.2 0.3 0.19 11.2 0.0 2.2 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|156937499|ref|YP_001435295.1| - 0.04 13.5 0.0 0.091 12.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MarR_2 PF12802.2 gi|156937499|ref|YP_001435295.1| - 0.041 13.5 0.0 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|156937499|ref|YP_001435295.1| - 0.057 13.1 0.5 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|156937499|ref|YP_001435295.1| - 0.059 13.0 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family Myb_DNA-bind_6 PF13921.1 gi|156937499|ref|YP_001435295.1| - 0.06 13.4 0.2 0.16 12.0 0.0 1.8 2 1 0 2 2 2 0 Myb-like DNA-binding domain ACT_4 PF13291.1 gi|156937499|ref|YP_001435295.1| - 0.084 13.2 1.7 0.52 10.6 0.0 2.8 2 1 2 4 4 4 0 ACT domain HrcA_DNA-bdg PF03444.10 gi|156937499|ref|YP_001435295.1| - 0.086 12.2 1.4 0.25 10.7 0.1 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_6 PF01418.12 gi|156937499|ref|YP_001435295.1| - 0.11 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Fe_dep_repress PF01325.14 gi|156937499|ref|YP_001435295.1| - 0.14 12.1 0.9 0.3 11.0 0.0 2.0 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain ATP_bind_3 PF01171.15 gi|156937500|ref|YP_001435296.1| - 4.6e-14 52.3 0.0 6.8e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|156937500|ref|YP_001435296.1| - 3.5e-07 29.1 0.0 5e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|156937500|ref|YP_001435296.1| - 8.9e-07 28.0 0.0 1.2e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|156937500|ref|YP_001435296.1| - 2.1e-06 27.1 0.0 1e-05 24.9 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|156937500|ref|YP_001435296.1| - 6.6e-06 25.8 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|156937500|ref|YP_001435296.1| - 0.00093 18.6 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|156937500|ref|YP_001435296.1| - 0.0016 18.2 0.0 0.0069 16.2 0.0 1.9 1 1 1 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.14 gi|156937500|ref|YP_001435296.1| - 0.011 14.7 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Arginosuccinate synthase YyzF PF14116.1 gi|156937500|ref|YP_001435296.1| - 0.025 14.5 0.6 12 5.9 0.0 3.4 3 0 0 3 3 3 0 YyzF-like protein HTH_22 PF13309.1 gi|156937500|ref|YP_001435296.1| - 0.11 12.3 0.1 0.35 10.6 0.1 1.9 2 0 0 2 2 2 0 HTH domain RecR PF02132.10 gi|156937500|ref|YP_001435296.1| - 6.8 6.2 11.6 1.4 8.4 0.2 2.8 3 0 0 3 3 3 0 RecR protein Radical_SAM PF04055.16 gi|156937501|ref|YP_001435297.1| - 1.2e-12 48.3 0.0 2.7e-12 47.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily TrmB PF01978.14 gi|156937503|ref|YP_001435299.1| - 9.4e-08 31.6 0.1 1.5e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|156937503|ref|YP_001435299.1| - 2e-07 31.2 0.1 3.2e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|156937503|ref|YP_001435299.1| - 4.2e-07 29.5 0.0 7.5e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|156937503|ref|YP_001435299.1| - 1.3e-05 24.9 0.0 2.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|156937503|ref|YP_001435299.1| - 1.3e-05 24.7 0.2 2.5e-05 23.9 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.1 gi|156937503|ref|YP_001435299.1| - 3.6e-05 23.4 0.1 0.00016 21.4 0.0 1.9 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|156937503|ref|YP_001435299.1| - 4.1e-05 23.4 0.2 7.7e-05 22.5 0.0 1.5 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|156937503|ref|YP_001435299.1| - 0.00015 21.0 0.1 0.00045 19.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family GPP34 PF05719.6 gi|156937503|ref|YP_001435299.1| - 0.00026 21.1 0.1 0.00034 20.7 0.1 1.2 1 0 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) DUF2250 PF10007.4 gi|156937503|ref|YP_001435299.1| - 0.00072 19.4 0.6 0.0014 18.4 0.4 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|156937503|ref|YP_001435299.1| - 0.00097 18.7 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Phage_rep_org_N PF09681.5 gi|156937503|ref|YP_001435299.1| - 0.0017 17.8 0.1 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_29 PF13551.1 gi|156937503|ref|YP_001435299.1| - 0.0023 18.0 0.1 0.011 15.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_24 PF13412.1 gi|156937503|ref|YP_001435299.1| - 0.0062 15.8 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|156937503|ref|YP_001435299.1| - 0.0097 15.7 0.3 0.019 14.7 0.2 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF2067 PF09840.4 gi|156937503|ref|YP_001435299.1| - 0.013 14.9 2.2 0.017 14.5 1.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) TFIIE_alpha PF02002.12 gi|156937503|ref|YP_001435299.1| - 0.016 14.7 0.6 0.024 14.1 0.4 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.1 gi|156937503|ref|YP_001435299.1| - 0.02 15.0 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2508 PF10704.4 gi|156937503|ref|YP_001435299.1| - 0.024 14.8 0.2 0.051 13.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) Mnd1 PF03962.10 gi|156937503|ref|YP_001435299.1| - 0.048 13.3 0.6 0.076 12.6 0.4 1.2 1 0 0 1 1 1 0 Mnd1 family Phage_rep_O PF04492.8 gi|156937503|ref|YP_001435299.1| - 0.05 13.8 0.1 0.1 12.7 0.0 1.5 1 1 0 1 1 1 0 Bacteriophage replication protein O YscJ_FliF PF01514.12 gi|156937503|ref|YP_001435299.1| - 0.055 12.6 0.0 0.076 12.1 0.0 1.2 1 0 0 1 1 1 0 Secretory protein of YscJ/FliF family HTH_17 PF12728.2 gi|156937503|ref|YP_001435299.1| - 0.063 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|156937503|ref|YP_001435299.1| - 0.069 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|156937503|ref|YP_001435299.1| - 0.08 12.5 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rio2_N PF09202.6 gi|156937503|ref|YP_001435299.1| - 0.096 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal YfdX PF10938.3 gi|156937503|ref|YP_001435299.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 YfdX protein HTH_34 PF13601.1 gi|156937503|ref|YP_001435299.1| - 0.11 12.4 0.1 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain UPF0122 PF04297.9 gi|156937503|ref|YP_001435299.1| - 0.12 12.4 0.4 0.16 12.0 0.2 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DUF2513 PF10711.4 gi|156937503|ref|YP_001435299.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|156937503|ref|YP_001435299.1| - 0.13 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator GreA_GreB_N PF03449.10 gi|156937503|ref|YP_001435299.1| - 0.36 10.9 3.3 0.89 9.6 0.4 2.1 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal PCNA_N PF00705.13 gi|156937506|ref|YP_001435302.1| - 6.1e-12 45.1 0.1 2.4e-11 43.2 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|156937506|ref|YP_001435302.1| - 9.2e-06 25.6 2.6 0.0061 16.4 0.3 3.5 2 2 1 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.7 gi|156937506|ref|YP_001435302.1| - 2.8e-05 23.2 0.3 3.3e-05 22.9 0.2 1.2 1 0 0 1 1 1 1 Hus1-like protein Rad9 PF04139.8 gi|156937506|ref|YP_001435302.1| - 0.00055 19.1 1.1 0.00076 18.6 0.8 1.2 1 0 0 1 1 1 1 Rad9 Hen1_L PF12623.2 gi|156937507|ref|YP_001435303.1| - 0.0015 17.3 0.1 0.012 14.3 0.0 1.9 2 0 0 2 2 2 1 RNA repair, ligase-Pnkp-associating, region of Hen1 DUF2067 PF09840.4 gi|156937507|ref|YP_001435303.1| - 0.026 14.0 0.2 0.11 12.0 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) PX PF00787.19 gi|156937507|ref|YP_001435303.1| - 0.043 13.6 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 PX domain HTH_37 PF13744.1 gi|156937507|ref|YP_001435303.1| - 0.061 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF677 PF05055.7 gi|156937507|ref|YP_001435303.1| - 0.084 11.5 2.9 1.4 7.4 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF677) AAA_10 PF12846.2 gi|156937508|ref|YP_001435304.1| - 4.3e-22 78.9 1.0 4.1e-14 52.7 0.0 2.8 3 1 1 4 4 4 2 AAA-like domain DUF87 PF01935.12 gi|156937508|ref|YP_001435304.1| - 6.5e-09 35.9 1.3 4.6e-08 33.1 0.1 2.7 2 1 0 2 2 2 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|156937508|ref|YP_001435304.1| - 5.2e-08 31.9 0.1 0.00066 18.4 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|156937508|ref|YP_001435304.1| - 8.2e-07 27.7 0.0 0.0018 16.6 0.0 2.4 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|156937508|ref|YP_001435304.1| - 8.9e-06 25.8 0.6 3.2e-05 24.0 0.1 2.2 2 1 0 2 2 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|156937508|ref|YP_001435304.1| - 6.2e-05 22.5 0.0 0.00019 20.9 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family TraG-D_C PF12696.2 gi|156937508|ref|YP_001435304.1| - 0.00019 21.2 0.0 0.00053 19.8 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T2SE PF00437.15 gi|156937508|ref|YP_001435304.1| - 0.00064 18.7 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.1 gi|156937508|ref|YP_001435304.1| - 0.0018 17.9 0.0 0.0045 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain T4SS-DNA_transf PF02534.9 gi|156937508|ref|YP_001435304.1| - 0.0028 16.2 0.2 0.0052 15.4 0.0 1.4 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer DUF2075 PF09848.4 gi|156937508|ref|YP_001435304.1| - 0.0032 16.4 0.0 0.029 13.3 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|156937508|ref|YP_001435304.1| - 0.004 17.0 0.7 0.023 14.5 0.0 2.5 2 2 1 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|156937508|ref|YP_001435304.1| - 0.0052 16.2 0.0 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.7 gi|156937508|ref|YP_001435304.1| - 0.0072 15.9 0.1 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|156937508|ref|YP_001435304.1| - 0.0082 16.9 0.3 0.027 15.2 0.0 2.1 2 1 0 2 2 2 1 AAA domain Helicase_RecD PF05127.9 gi|156937508|ref|YP_001435304.1| - 0.0088 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Helicase RsgI_N PF12791.2 gi|156937508|ref|YP_001435304.1| - 0.012 15.2 0.9 0.63 9.7 0.0 3.2 3 0 0 3 3 3 0 Anti-sigma factor N-terminus ABC_tran PF00005.22 gi|156937508|ref|YP_001435304.1| - 0.017 15.4 0.6 0.053 13.8 0.4 1.8 1 1 0 1 1 1 0 ABC transporter AAA_33 PF13671.1 gi|156937508|ref|YP_001435304.1| - 0.018 14.9 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|156937508|ref|YP_001435304.1| - 0.026 14.2 0.1 0.066 12.9 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|156937508|ref|YP_001435304.1| - 0.034 13.5 0.0 0.069 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|156937508|ref|YP_001435304.1| - 0.039 14.2 1.9 0.11 12.8 0.0 2.5 2 1 1 3 3 3 0 AAA domain cobW PF02492.14 gi|156937508|ref|YP_001435304.1| - 0.048 13.1 0.1 0.11 11.9 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DAP3 PF10236.4 gi|156937508|ref|YP_001435304.1| - 0.048 12.5 0.1 0.12 11.2 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.18 gi|156937508|ref|YP_001435304.1| - 0.051 13.5 0.2 0.24 11.3 0.0 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|156937508|ref|YP_001435304.1| - 0.057 13.4 0.7 0.12 12.3 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|156937508|ref|YP_001435304.1| - 0.064 12.1 1.0 12 4.7 0.0 2.9 3 0 0 3 3 3 0 NB-ARC domain AAA_23 PF13476.1 gi|156937508|ref|YP_001435304.1| - 0.067 13.5 4.7 1.5 9.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain DUF815 PF05673.8 gi|156937508|ref|YP_001435304.1| - 0.081 11.8 0.4 0.84 8.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|156937508|ref|YP_001435304.1| - 0.082 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain DEAD PF00270.24 gi|156937508|ref|YP_001435304.1| - 0.31 10.4 1.7 4.5 6.7 0.3 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase PAPS_reduct PF01507.14 gi|156937510|ref|YP_001435306.1| - 3.6e-42 144.1 0.0 6.2e-42 143.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|156937510|ref|YP_001435306.1| - 2.3e-07 31.0 11.8 2.3e-07 31.0 8.2 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156937510|ref|YP_001435306.1| - 3.3e-07 30.5 1.8 0.031 14.6 0.2 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156937510|ref|YP_001435306.1| - 3.8e-07 29.8 11.8 3.8e-07 29.8 8.2 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156937510|ref|YP_001435306.1| - 9e-07 28.6 10.2 4e-06 26.5 5.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156937510|ref|YP_001435306.1| - 2.9e-06 26.6 15.8 0.00023 20.6 2.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|156937510|ref|YP_001435306.1| - 2.6e-05 23.8 14.9 0.00035 20.3 2.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|156937510|ref|YP_001435306.1| - 0.0013 18.4 3.0 0.0013 18.4 2.0 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156937510|ref|YP_001435306.1| - 0.0013 18.9 10.6 0.0013 18.9 7.3 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156937510|ref|YP_001435306.1| - 0.0014 18.6 12.2 0.18 11.8 1.3 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156937510|ref|YP_001435306.1| - 0.0017 18.8 0.2 0.0017 18.8 0.2 3.3 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|156937510|ref|YP_001435306.1| - 0.0023 18.6 13.0 0.17 12.6 8.0 3.4 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|156937510|ref|YP_001435306.1| - 0.018 15.4 5.4 0.094 13.1 0.1 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain ATP_bind_4 PF01902.12 gi|156937510|ref|YP_001435306.1| - 0.022 14.1 0.0 0.47 9.7 0.0 2.5 2 0 0 2 2 2 0 ATP-binding region Fer4_4 PF12800.2 gi|156937510|ref|YP_001435306.1| - 2 8.9 17.6 0.078 13.3 1.6 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|156937510|ref|YP_001435306.1| - 7.3 7.1 14.5 2.8 8.4 1.5 3.1 2 1 1 3 3 2 0 4Fe-4S dicluster domain Peptidase_M28 PF04389.12 gi|156937512|ref|YP_001435308.1| - 0.023 14.4 1.1 0.95 9.1 0.1 2.3 1 1 0 2 2 2 0 Peptidase family M28 PTH2 PF01981.11 gi|156937513|ref|YP_001435309.1| - 1.7e-41 140.5 0.1 1.8e-41 140.4 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 tRNA_m1G_MT PF01746.16 gi|156937514|ref|YP_001435310.1| - 1.1e-08 34.9 0.0 1.5e-07 31.2 0.0 2.2 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|156937514|ref|YP_001435310.1| - 3.1e-05 23.4 0.0 7.6e-05 22.1 0.0 1.7 1 1 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase AAA_31 PF13614.1 gi|156937515|ref|YP_001435311.1| - 2.6e-12 46.9 0.0 1e-11 44.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|156937515|ref|YP_001435311.1| - 1.1e-09 37.9 0.0 1.4e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YhjQ PF06564.7 gi|156937515|ref|YP_001435311.1| - 6.6e-07 28.9 0.0 8.7e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|156937515|ref|YP_001435311.1| - 0.00014 21.0 0.1 0.011 14.8 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ AAA_26 PF13500.1 gi|156937515|ref|YP_001435311.1| - 0.00027 20.5 0.9 0.00088 18.9 0.6 1.8 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|156937515|ref|YP_001435311.1| - 0.00066 18.8 6.5 0.0012 18.0 2.5 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|156937515|ref|YP_001435311.1| - 0.025 13.7 0.1 0.041 13.0 0.0 1.5 1 1 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|156937515|ref|YP_001435311.1| - 0.25 10.7 1.3 1.3 8.4 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF2209 PF09974.4 gi|156937515|ref|YP_001435311.1| - 0.33 11.0 1.8 1.1 9.3 0.2 2.4 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2209) Ribosomal_S28e PF01200.13 gi|156937516|ref|YP_001435312.1| - 1e-30 105.2 5.2 1.3e-30 104.9 3.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|156937516|ref|YP_001435312.1| - 0.25 11.1 2.3 0.7 9.7 0.1 2.6 2 1 1 3 3 3 0 KOW motif Ribosomal_L24e PF01246.15 gi|156937517|ref|YP_001435313.1| - 4.3e-26 90.5 1.0 4.5e-26 90.4 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|156937517|ref|YP_001435313.1| - 2.1e-08 33.6 0.8 2.5e-08 33.4 0.6 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|156937517|ref|YP_001435313.1| - 0.0027 16.9 0.7 0.0037 16.5 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF581) Arc_trans_TRASH PF08394.5 gi|156937517|ref|YP_001435313.1| - 0.092 12.9 0.1 0.18 12.0 0.1 1.5 1 1 0 1 1 1 0 Archaeal TRASH domain zf-C4_ClpX PF06689.8 gi|156937517|ref|YP_001435313.1| - 0.1 12.1 0.0 0.1 12.1 0.0 1.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger DUF2116 PF09889.4 gi|156937517|ref|YP_001435313.1| - 0.22 11.3 0.8 6.1 6.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-HIT PF04438.11 gi|156937517|ref|YP_001435313.1| - 0.23 11.1 4.8 15 5.2 3.3 2.3 1 1 0 1 1 1 0 HIT zinc finger DUF2256 PF10013.4 gi|156937517|ref|YP_001435313.1| - 1.8 8.3 5.8 8.8 6.1 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) NDK PF00334.14 gi|156937518|ref|YP_001435314.1| - 1.3e-57 193.3 0.0 1.5e-57 193.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase PrpR_N PF06506.6 gi|156937519|ref|YP_001435315.1| - 0.015 14.6 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Propionate catabolism activator HA2 PF04408.18 gi|156937519|ref|YP_001435315.1| - 0.026 14.5 0.0 0.057 13.4 0.0 1.2 1 1 0 1 1 1 0 Helicase associated domain (HA2) SDH_sah PF01972.11 gi|156937520|ref|YP_001435316.1| - 5.5e-05 22.0 0.5 0.1 11.3 0.0 2.0 2 0 0 2 2 2 2 Serine dehydrogenase proteinase Semialdhyde_dh PF01118.19 gi|156937521|ref|YP_001435317.1| - 3.3e-31 108.0 0.0 8.6e-31 106.7 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|156937521|ref|YP_001435317.1| - 6.6e-12 45.6 0.0 9.3e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain NmrA PF05368.8 gi|156937521|ref|YP_001435317.1| - 0.0097 15.1 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|156937521|ref|YP_001435317.1| - 0.012 14.6 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|156937521|ref|YP_001435317.1| - 0.054 14.0 0.0 0.098 13.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|156937521|ref|YP_001435317.1| - 0.15 11.9 0.0 0.81 9.6 0.0 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus BPD_transp_2 PF02653.11 gi|156937522|ref|YP_001435318.1| - 5.9e-25 87.7 62.6 1.6e-24 86.3 38.3 2.6 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|156937523|ref|YP_001435319.1| - 1.3e-45 155.4 28.9 1.3e-45 155.4 20.0 1.3 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|156937524|ref|YP_001435320.1| - 1.6e-31 109.4 0.0 2e-31 109.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156937524|ref|YP_001435320.1| - 8.7e-13 48.8 0.1 1.4e-10 41.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|156937524|ref|YP_001435320.1| - 3.5e-08 32.9 0.0 8e-08 31.7 0.0 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|156937524|ref|YP_001435320.1| - 1.9e-06 27.3 0.2 3.2e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|156937524|ref|YP_001435320.1| - 4.5e-05 22.7 0.4 0.0064 15.7 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|156937524|ref|YP_001435320.1| - 0.00016 22.0 0.0 0.00023 21.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|156937524|ref|YP_001435320.1| - 0.0013 17.8 0.1 0.29 10.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|156937524|ref|YP_001435320.1| - 0.002 17.8 0.0 0.0041 16.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DUF258 PF03193.11 gi|156937524|ref|YP_001435320.1| - 0.012 14.8 0.1 0.018 14.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|156937524|ref|YP_001435320.1| - 0.012 15.7 0.2 0.034 14.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|156937524|ref|YP_001435320.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.8 1 1 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|156937524|ref|YP_001435320.1| - 0.016 13.8 0.3 0.13 10.7 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SRP54 PF00448.17 gi|156937524|ref|YP_001435320.1| - 0.024 14.0 0.1 0.041 13.3 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|156937524|ref|YP_001435320.1| - 0.034 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|156937524|ref|YP_001435320.1| - 0.04 13.3 0.0 0.093 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|156937524|ref|YP_001435320.1| - 0.05 13.0 0.4 0.4 10.0 0.2 2.1 2 1 0 2 2 2 0 AAA-like domain FeoB_N PF02421.13 gi|156937524|ref|YP_001435320.1| - 0.055 12.7 0.2 0.21 10.8 0.0 1.9 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_16 PF13191.1 gi|156937524|ref|YP_001435320.1| - 0.11 12.4 0.1 0.24 11.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|156937524|ref|YP_001435320.1| - 0.12 12.0 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|156937524|ref|YP_001435320.1| - 0.13 12.1 0.1 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|156937524|ref|YP_001435320.1| - 0.13 12.4 0.1 0.31 11.2 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|156937524|ref|YP_001435320.1| - 0.14 10.5 0.1 0.2 10.0 0.1 1.1 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|156937525|ref|YP_001435321.1| - 4e-35 121.1 0.0 5.5e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156937525|ref|YP_001435321.1| - 8.2e-13 48.9 0.1 2.3e-06 27.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156937525|ref|YP_001435321.1| - 2.6e-09 36.6 1.0 6.3e-08 32.1 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|156937525|ref|YP_001435321.1| - 1.5e-07 31.1 0.2 0.012 15.0 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|156937525|ref|YP_001435321.1| - 1.5e-05 25.4 0.3 3.5e-05 24.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|156937525|ref|YP_001435321.1| - 2.1e-05 23.9 0.0 5.2e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|156937525|ref|YP_001435321.1| - 2.4e-05 23.1 2.0 0.042 12.4 0.2 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class Dynamin_N PF00350.18 gi|156937525|ref|YP_001435321.1| - 0.00018 21.3 0.1 0.00039 20.2 0.1 1.6 1 1 0 1 1 1 1 Dynamin family AAA_25 PF13481.1 gi|156937525|ref|YP_001435321.1| - 0.0002 20.8 0.0 0.00077 18.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|156937525|ref|YP_001435321.1| - 0.00028 20.6 0.6 0.00094 18.9 0.4 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|156937525|ref|YP_001435321.1| - 0.001 18.9 0.1 0.0034 17.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|156937525|ref|YP_001435321.1| - 0.0017 18.0 1.2 0.0028 17.3 0.2 1.9 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|156937525|ref|YP_001435321.1| - 0.002 18.1 0.7 0.0092 15.9 0.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|156937525|ref|YP_001435321.1| - 0.0021 17.2 0.1 0.0043 16.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|156937525|ref|YP_001435321.1| - 0.0025 16.9 0.0 0.031 13.3 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|156937525|ref|YP_001435321.1| - 0.0027 17.6 0.6 0.0042 17.0 0.4 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|156937525|ref|YP_001435321.1| - 0.0027 17.8 0.5 0.043 13.9 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|156937525|ref|YP_001435321.1| - 0.004 17.9 0.9 0.0078 17.0 0.6 1.8 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|156937525|ref|YP_001435321.1| - 0.0069 16.8 0.5 0.046 14.2 0.3 2.1 1 1 0 1 1 1 1 Miro-like protein T2SE PF00437.15 gi|156937525|ref|YP_001435321.1| - 0.0076 15.1 0.8 0.016 14.1 0.2 1.7 1 1 1 2 2 2 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|156937525|ref|YP_001435321.1| - 0.014 15.7 0.7 0.11 12.7 0.5 2.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|156937525|ref|YP_001435321.1| - 0.014 15.0 0.1 0.028 14.0 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|156937525|ref|YP_001435321.1| - 0.016 14.9 0.3 0.069 12.9 0.1 2.2 1 1 1 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|156937525|ref|YP_001435321.1| - 0.018 14.9 0.1 0.079 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|156937525|ref|YP_001435321.1| - 0.024 13.5 0.2 0.045 12.6 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Adeno_IVa2 PF02456.10 gi|156937525|ref|YP_001435321.1| - 0.044 12.4 0.1 0.067 11.8 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein cobW PF02492.14 gi|156937525|ref|YP_001435321.1| - 0.053 12.9 0.0 0.087 12.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|156937525|ref|YP_001435321.1| - 0.055 13.6 0.3 0.11 12.6 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|156937525|ref|YP_001435321.1| - 0.062 11.7 0.0 0.13 10.7 0.0 1.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|156937525|ref|YP_001435321.1| - 0.079 12.6 0.1 0.17 11.6 0.1 1.6 1 1 0 1 1 1 0 NTPase AAA_30 PF13604.1 gi|156937525|ref|YP_001435321.1| - 0.094 12.2 0.0 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|156937525|ref|YP_001435321.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain SbcCD_C PF13558.1 gi|156937525|ref|YP_001435321.1| - 0.12 12.3 0.1 0.82 9.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.12 gi|156937525|ref|YP_001435321.1| - 0.12 11.8 0.1 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AA_kinase PF00696.23 gi|156937526|ref|YP_001435322.1| - 9.9e-23 80.9 0.0 1.5e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family DUF87 PF01935.12 gi|156937528|ref|YP_001435324.1| - 5.2e-37 127.8 1.5 9.3e-37 127.0 1.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|156937528|ref|YP_001435324.1| - 4e-22 79.0 0.1 5.8e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|156937528|ref|YP_001435324.1| - 6.1e-08 31.4 0.5 8.7e-05 21.0 0.0 2.5 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.5 gi|156937528|ref|YP_001435324.1| - 0.00021 21.1 0.1 0.00051 19.8 0.0 1.8 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|156937528|ref|YP_001435324.1| - 0.0013 17.4 0.1 0.0037 15.9 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain NurA PF09376.5 gi|156937529|ref|YP_001435325.1| - 2e-15 56.9 0.3 1.4e-14 54.1 0.2 2.0 1 1 0 1 1 1 1 NurA domain DUF600 PF04634.7 gi|156937530|ref|YP_001435326.1| - 0.012 15.6 0.0 0.015 15.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF600 Peptidase_M17 PF00883.16 gi|156937531|ref|YP_001435327.1| - 1e-101 339.9 0.0 1.3e-101 339.5 0.0 1.1 1 0 0 1 1 1 1 Cytosol aminopeptidase family, catalytic domain Peptidase_M17_N PF02789.12 gi|156937531|ref|YP_001435327.1| - 0.022 14.4 0.0 0.057 13.1 0.0 1.7 1 0 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Imm25 PF15571.1 gi|156937533|ref|YP_001435329.1| - 0.029 14.4 0.2 0.035 14.2 0.1 1.3 1 0 0 1 1 1 0 Immunity protein 25 CbiA PF01656.18 gi|156937534|ref|YP_001435330.1| - 2e-09 37.1 0.0 3.8e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|156937534|ref|YP_001435330.1| - 1.1e-06 28.6 0.0 1.8e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|156937534|ref|YP_001435330.1| - 0.0019 17.2 0.0 0.004 16.2 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|156937534|ref|YP_001435330.1| - 0.0065 15.5 0.0 0.014 14.4 0.0 1.5 1 0 0 1 1 1 1 ATPase MipZ DUF4032 PF13224.1 gi|156937536|ref|YP_001435332.1| - 0.04 13.6 0.0 0.068 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4032) DUF3786 PF12654.2 gi|156937538|ref|YP_001435334.1| - 0.0012 18.1 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3786) DUF837 PF05769.6 gi|156937538|ref|YP_001435334.1| - 0.0066 16.0 1.2 0.45 10.0 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF837) Pox_A_type_inc PF04508.7 gi|156937538|ref|YP_001435334.1| - 0.014 15.0 0.1 0.014 15.0 0.1 2.9 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat DUF904 PF06005.7 gi|156937538|ref|YP_001435334.1| - 0.028 14.6 1.6 1.8 8.9 0.0 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF904) Apolipoprotein PF01442.13 gi|156937538|ref|YP_001435334.1| - 0.032 13.7 0.2 3.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Vps53_N PF04100.7 gi|156937538|ref|YP_001435334.1| - 0.033 12.9 2.1 2.2 6.9 0.2 2.0 2 0 0 2 2 2 0 Vps53-like, N-terminal Kinetocho_Slk19 PF12709.2 gi|156937538|ref|YP_001435334.1| - 0.034 14.2 1.1 0.63 10.1 0.1 2.2 2 0 0 2 2 2 0 Central kinetochore-associated DUF2031 PF09592.5 gi|156937538|ref|YP_001435334.1| - 0.052 12.6 0.4 0.24 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2031) DUF2058 PF09831.4 gi|156937538|ref|YP_001435334.1| - 0.082 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2058) WXG100 PF06013.7 gi|156937538|ref|YP_001435334.1| - 0.11 12.5 0.1 2.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Proteins of 100 residues with WXG DUF2779 PF11074.3 gi|156937538|ref|YP_001435334.1| - 0.11 12.5 0.5 0.19 11.7 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function(DUF2779) TMF_DNA_bd PF12329.3 gi|156937538|ref|YP_001435334.1| - 0.12 12.1 1.3 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|156937538|ref|YP_001435334.1| - 0.17 11.3 1.8 12 5.4 0.1 2.4 2 0 0 2 2 2 0 Septum formation initiator PRESAN PF09687.5 gi|156937538|ref|YP_001435334.1| - 0.24 11.4 2.8 0.29 11.2 0.6 1.8 2 0 0 2 2 2 0 Plasmodium RESA N-terminal OmpH PF03938.9 gi|156937538|ref|YP_001435334.1| - 0.34 10.8 1.7 4 7.3 0.3 2.0 1 1 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF4618 PF15397.1 gi|156937538|ref|YP_001435334.1| - 0.47 9.7 2.8 2.7 7.2 2.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Cep57_CLD_2 PF14197.1 gi|156937538|ref|YP_001435334.1| - 0.82 9.6 4.8 1.4 8.9 0.1 2.6 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 Meth_synt_2 PF01717.13 gi|156937540|ref|YP_001435336.1| - 3e-84 282.7 0.0 3.4e-84 282.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|156937540|ref|YP_001435336.1| - 4.4e-29 101.7 1.0 1.2e-26 93.7 0.7 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Proteasome PF00227.21 gi|156937540|ref|YP_001435336.1| - 0.0063 15.8 0.0 0.014 14.6 0.0 1.6 1 0 0 1 1 1 1 Proteasome subunit SHOCT PF09851.4 gi|156937540|ref|YP_001435336.1| - 0.036 13.5 6.3 0.24 10.9 0.8 2.7 2 0 0 2 2 2 0 Short C-terminal domain DUF826 PF05696.6 gi|156937540|ref|YP_001435336.1| - 0.11 12.6 0.3 0.29 11.2 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF826) Meth_synt_1 PF08267.7 gi|156937541|ref|YP_001435337.1| - 8.4e-29 100.8 0.1 6.5e-21 74.9 0.2 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|156937541|ref|YP_001435337.1| - 2.9e-14 52.7 0.0 3.5e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Methyltransf_11 PF08241.7 gi|156937542|ref|YP_001435338.1| - 1.4e-18 67.1 0.0 2.4e-18 66.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|156937542|ref|YP_001435338.1| - 2.8e-15 56.4 0.0 4.2e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937542|ref|YP_001435338.1| - 8.4e-12 44.9 0.0 1.2e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|156937542|ref|YP_001435338.1| - 9.4e-09 35.6 0.0 1.5e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|156937542|ref|YP_001435338.1| - 1.2e-08 34.3 0.0 3e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|156937542|ref|YP_001435338.1| - 3.7e-08 33.4 0.0 5.6e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|156937542|ref|YP_001435338.1| - 8.7e-08 32.0 0.0 1.3e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937542|ref|YP_001435338.1| - 1.7e-06 28.5 0.0 2.2e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|156937542|ref|YP_001435338.1| - 6.9e-05 22.0 0.0 0.0001 21.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|156937542|ref|YP_001435338.1| - 8.5e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|156937542|ref|YP_001435338.1| - 9.3e-05 22.0 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|156937542|ref|YP_001435338.1| - 0.019 14.3 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain FmrO PF07091.6 gi|156937542|ref|YP_001435338.1| - 0.079 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) HTH_12 PF08461.5 gi|156937543|ref|YP_001435339.1| - 2.5e-05 23.8 0.2 0.00016 21.3 0.0 2.2 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain AAA_22 PF13401.1 gi|156937543|ref|YP_001435339.1| - 0.00045 20.3 0.1 0.006 16.7 0.0 2.5 2 2 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|156937543|ref|YP_001435339.1| - 0.0083 15.8 0.3 2.2 7.9 0.0 2.5 3 0 0 3 3 3 2 NACHT domain Symplekin_C PF12295.3 gi|156937543|ref|YP_001435339.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Symplekin tight junction protein C terminal NB-ARC PF00931.17 gi|156937543|ref|YP_001435339.1| - 0.077 11.8 0.0 9.2 5.0 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Methyltrn_RNA_3 PF02598.12 gi|156937544|ref|YP_001435340.1| - 7.4e-27 94.4 0.0 2.2e-26 92.8 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|156937544|ref|YP_001435340.1| - 0.17 11.7 0.0 0.63 9.9 0.0 1.8 2 0 0 2 2 2 0 SpoU rRNA Methylase family Semialdhyde_dhC PF02774.13 gi|156937545|ref|YP_001435341.1| - 4.8e-36 124.3 0.1 6.6e-36 123.8 0.1 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|156937545|ref|YP_001435341.1| - 2.7e-32 111.6 0.0 5.7e-32 110.5 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|156937545|ref|YP_001435341.1| - 0.00013 22.5 0.0 0.00054 20.4 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.15 gi|156937545|ref|YP_001435341.1| - 0.00014 21.3 1.1 0.019 14.4 0.8 2.4 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|156937545|ref|YP_001435341.1| - 0.013 15.4 0.0 0.039 13.8 0.0 1.9 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|156937545|ref|YP_001435341.1| - 0.022 14.7 0.2 0.74 9.7 0.0 2.8 2 1 0 2 2 2 0 NADH(P)-binding Phage_T4_gp19 PF06841.7 gi|156937545|ref|YP_001435341.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 T4-like virus tail tube protein gp19 RNase_Zc3h12a PF11977.3 gi|156937546|ref|YP_001435342.1| - 2.8e-28 98.7 0.0 3.9e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain Gas_vesicle PF00741.13 gi|156937546|ref|YP_001435342.1| - 0.017 14.9 0.1 0.061 13.2 0.0 2.0 2 0 0 2 2 2 0 Gas vesicle protein DUF2636 PF11120.3 gi|156937546|ref|YP_001435342.1| - 0.1 12.1 0.8 0.2 11.1 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2636) HisG PF01634.13 gi|156937547|ref|YP_001435343.1| - 2.3e-50 170.3 0.0 3.7e-50 169.7 0.0 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|156937547|ref|YP_001435343.1| - 1.4e-23 82.5 0.8 2.9e-23 81.5 0.6 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|156937547|ref|YP_001435343.1| - 0.00012 21.7 0.0 0.1 12.1 0.0 2.3 1 1 1 2 2 2 2 NMT1/THI5 like Cytidylate_kin2 PF13189.1 gi|156937549|ref|YP_001435345.1| - 8.8e-22 77.8 0.0 1.2e-19 70.8 0.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|156937549|ref|YP_001435345.1| - 3.3e-19 69.4 0.0 4.4e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|156937549|ref|YP_001435345.1| - 6.9e-16 59.1 0.2 1.2e-15 58.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|156937549|ref|YP_001435345.1| - 5.7e-09 35.9 0.3 1.1e-07 31.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|156937549|ref|YP_001435345.1| - 1.3e-07 31.6 0.3 5.4e-07 29.5 0.2 1.9 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|156937549|ref|YP_001435345.1| - 4e-06 26.9 0.0 1.2e-05 25.2 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|156937549|ref|YP_001435345.1| - 7.2e-06 26.2 0.1 2e-05 24.8 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|156937549|ref|YP_001435345.1| - 9.8e-06 25.5 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|156937549|ref|YP_001435345.1| - 1.7e-05 24.3 0.0 0.0085 15.5 0.0 2.1 2 0 0 2 2 2 2 Dephospho-CoA kinase AAA_19 PF13245.1 gi|156937549|ref|YP_001435345.1| - 4.4e-05 23.1 0.1 0.00014 21.5 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain KTI12 PF08433.5 gi|156937549|ref|YP_001435345.1| - 4.5e-05 22.7 0.0 6.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|156937549|ref|YP_001435345.1| - 8.1e-05 22.7 0.0 0.00016 21.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|156937549|ref|YP_001435345.1| - 0.0001 21.8 0.1 0.00013 21.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_16 PF13191.1 gi|156937549|ref|YP_001435345.1| - 0.00023 21.1 0.2 0.0003 20.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|156937549|ref|YP_001435345.1| - 0.00047 19.2 0.1 0.0016 17.5 0.0 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|156937549|ref|YP_001435345.1| - 0.00083 18.5 0.1 0.0016 17.5 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin RNA_helicase PF00910.17 gi|156937549|ref|YP_001435345.1| - 0.00095 19.3 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 RNA helicase NTPase_1 PF03266.10 gi|156937549|ref|YP_001435345.1| - 0.0012 18.5 0.1 0.0027 17.4 0.0 1.7 2 0 0 2 2 1 1 NTPase NACHT PF05729.7 gi|156937549|ref|YP_001435345.1| - 0.0017 18.0 0.0 0.0025 17.4 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.1 gi|156937549|ref|YP_001435345.1| - 0.002 17.7 0.1 0.038 13.5 0.1 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|156937549|ref|YP_001435345.1| - 0.0022 16.7 0.0 0.0028 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Guanylate_kin PF00625.16 gi|156937549|ref|YP_001435345.1| - 0.0022 17.4 0.0 0.013 14.9 0.0 1.9 2 0 0 2 2 2 1 Guanylate kinase AAA_14 PF13173.1 gi|156937549|ref|YP_001435345.1| - 0.0041 17.0 0.0 0.0058 16.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|156937549|ref|YP_001435345.1| - 0.0058 16.2 0.6 0.22 11.0 0.1 2.5 1 1 2 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|156937549|ref|YP_001435345.1| - 0.0061 16.0 0.3 0.011 15.1 0.2 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_5 PF07728.9 gi|156937549|ref|YP_001435345.1| - 0.0061 16.2 0.1 0.011 15.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.12 gi|156937549|ref|YP_001435345.1| - 0.009 15.4 0.0 2 7.7 0.0 2.4 2 1 0 2 2 2 1 Thymidylate kinase AAA_25 PF13481.1 gi|156937549|ref|YP_001435345.1| - 0.0091 15.4 0.2 0.011 15.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|156937549|ref|YP_001435345.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PRK PF00485.13 gi|156937549|ref|YP_001435345.1| - 0.011 15.3 0.0 0.044 13.3 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.4 gi|156937549|ref|YP_001435345.1| - 0.013 14.5 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|156937549|ref|YP_001435345.1| - 0.015 15.6 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter APS_kinase PF01583.15 gi|156937549|ref|YP_001435345.1| - 0.017 14.7 0.0 0.066 12.8 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase Sigma54_activ_2 PF14532.1 gi|156937549|ref|YP_001435345.1| - 0.021 14.8 0.0 0.04 13.9 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain ArgK PF03308.11 gi|156937549|ref|YP_001435345.1| - 0.024 13.4 0.2 0.038 12.7 0.1 1.3 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|156937549|ref|YP_001435345.1| - 0.025 14.1 0.2 0.066 12.7 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|156937549|ref|YP_001435345.1| - 0.029 13.5 0.2 0.067 12.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|156937549|ref|YP_001435345.1| - 0.039 13.6 0.1 0.083 12.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|156937549|ref|YP_001435345.1| - 0.041 13.5 0.0 0.063 12.9 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 E3_binding PF02817.12 gi|156937549|ref|YP_001435345.1| - 0.047 13.3 1.5 17 5.1 0.0 3.4 3 0 0 3 3 3 0 e3 binding domain NB-ARC PF00931.17 gi|156937549|ref|YP_001435345.1| - 0.054 12.3 0.1 0.074 11.8 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.14 gi|156937549|ref|YP_001435345.1| - 0.069 12.5 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CobU PF02283.11 gi|156937549|ref|YP_001435345.1| - 0.099 12.0 0.2 0.16 11.3 0.1 1.7 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase T2SE PF00437.15 gi|156937549|ref|YP_001435345.1| - 0.11 11.3 0.1 0.23 10.3 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.1 gi|156937549|ref|YP_001435345.1| - 0.17 11.4 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain ParA PF10609.4 gi|156937550|ref|YP_001435346.1| - 1.7e-30 104.6 0.1 3e-30 103.9 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|156937550|ref|YP_001435346.1| - 1.1e-20 73.9 0.0 1.6e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|156937550|ref|YP_001435346.1| - 4.5e-09 35.8 0.0 5.9e-06 25.6 0.1 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|156937550|ref|YP_001435346.1| - 1.3e-08 34.9 0.0 9.9e-08 32.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|156937550|ref|YP_001435346.1| - 2.1e-06 27.0 0.1 3.6e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|156937550|ref|YP_001435346.1| - 3.6e-05 22.9 0.0 6.6e-05 22.1 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|156937550|ref|YP_001435346.1| - 0.0024 17.2 0.0 0.005 16.2 0.0 1.5 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|156937550|ref|YP_001435346.1| - 0.0025 17.2 0.1 0.0093 15.3 0.0 1.8 2 0 0 2 2 2 1 YhjQ protein AAA_10 PF12846.2 gi|156937550|ref|YP_001435346.1| - 0.0059 16.0 0.1 0.0077 15.7 0.1 1.2 1 0 0 1 1 1 1 AAA-like domain PhoH PF02562.11 gi|156937550|ref|YP_001435346.1| - 0.028 13.6 0.0 0.054 12.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_26 PF13500.1 gi|156937550|ref|YP_001435346.1| - 0.029 13.9 0.1 7.7 6.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|156937550|ref|YP_001435346.1| - 0.034 13.5 0.1 0.058 12.8 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|156937550|ref|YP_001435346.1| - 0.037 12.8 0.1 0.059 12.1 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|156937550|ref|YP_001435346.1| - 0.039 13.5 0.1 0.067 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|156937550|ref|YP_001435346.1| - 0.06 12.4 0.0 0.099 11.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.12 gi|156937550|ref|YP_001435346.1| - 0.11 11.9 0.0 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|156937550|ref|YP_001435346.1| - 0.13 10.8 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|156937550|ref|YP_001435346.1| - 0.13 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain PIF1 PF05970.9 gi|156937550|ref|YP_001435346.1| - 0.15 10.9 0.1 0.24 10.3 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase GHMP_kinases_N PF00288.21 gi|156937551|ref|YP_001435347.1| - 4.6e-15 55.4 0.4 4.6e-15 55.4 0.2 2.5 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|156937551|ref|YP_001435347.1| - 6.9e-14 51.8 5.2 9.1e-14 51.4 2.5 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal FlgN PF05130.7 gi|156937551|ref|YP_001435347.1| - 0.0023 18.1 0.4 0.0035 17.6 0.3 1.2 1 0 0 1 1 1 1 FlgN protein DUF1002 PF06207.6 gi|156937551|ref|YP_001435347.1| - 0.062 12.6 0.3 0.17 11.2 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) Reeler PF02014.11 gi|156937552|ref|YP_001435348.1| - 1.2e-10 41.7 0.1 2.5e-10 40.7 0.1 1.5 1 0 0 1 1 1 1 Reeler domain UPF0147 PF03685.8 gi|156937553|ref|YP_001435349.1| - 2.3e-37 126.7 2.0 2.5e-37 126.5 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HAUS5 PF14817.1 gi|156937553|ref|YP_001435349.1| - 0.092 11.2 0.0 0.092 11.2 0.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 HEAT_2 PF13646.1 gi|156937553|ref|YP_001435349.1| - 0.12 12.6 0.2 0.25 11.6 0.1 1.6 1 1 0 1 1 1 0 HEAT repeats DUF402 PF04167.8 gi|156937554|ref|YP_001435350.1| - 1.6e-18 66.2 0.7 1.6e-18 66.2 0.5 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|156937554|ref|YP_001435350.1| - 0.00028 20.1 0.2 0.00065 19.0 0.0 1.7 2 0 0 2 2 2 1 Ribonuclease E/G family 2_5_RNA_ligase2 PF13563.1 gi|156937554|ref|YP_001435350.1| - 0.09 12.4 0.0 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 2'-5' RNA ligase superfamily DUF46 PF01864.12 gi|156937556|ref|YP_001435352.1| - 6.3e-43 146.6 4.5 1.3e-42 145.6 3.1 1.5 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|156937556|ref|YP_001435352.1| - 4.7e-08 33.0 3.8 1.3e-07 31.5 0.2 2.2 2 0 0 2 2 2 1 Cytidylyltransferase family Nop10p PF04135.7 gi|156937557|ref|YP_001435353.1| - 3.8e-26 90.5 1.6 4.6e-26 90.3 1.1 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|156937557|ref|YP_001435353.1| - 0.0012 18.1 0.4 0.0018 17.6 0.3 1.2 1 0 0 1 1 1 1 RecR protein Fer4_8 PF13183.1 gi|156937557|ref|YP_001435353.1| - 0.0074 16.2 0.2 0.0075 16.2 0.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF1272 PF06906.6 gi|156937557|ref|YP_001435353.1| - 0.012 15.4 1.5 0.015 15.1 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-FPG_IleRS PF06827.9 gi|156937557|ref|YP_001435353.1| - 0.34 10.6 7.4 5.2 6.8 5.3 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.3 gi|156937557|ref|YP_001435353.1| - 9.7 6.2 6.9 26 4.8 4.8 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) EIF_2_alpha PF07541.7 gi|156937558|ref|YP_001435354.1| - 5.3e-26 90.5 0.1 1.9e-25 88.7 0.0 1.9 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|156937558|ref|YP_001435354.1| - 1.7e-13 50.4 0.0 1.1e-12 47.8 0.0 2.2 2 0 0 2 2 2 1 S1 RNA binding domain N6_N4_Mtase PF01555.13 gi|156937558|ref|YP_001435354.1| - 0.028 13.9 0.2 0.078 12.4 0.2 1.6 1 1 1 2 2 2 0 DNA methylase DUF1048 PF06304.6 gi|156937558|ref|YP_001435354.1| - 0.045 14.0 2.2 8.3 6.7 0.6 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1048) Pox_polyA_pol_N PF12630.2 gi|156937558|ref|YP_001435354.1| - 0.051 13.6 0.1 0.093 12.8 0.1 1.4 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain RuvB_C PF05491.8 gi|156937558|ref|YP_001435354.1| - 0.062 12.9 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus MBT PF02820.13 gi|156937558|ref|YP_001435354.1| - 0.14 12.0 0.0 0.45 10.4 0.0 1.9 2 0 0 2 2 2 0 mbt repeat EXOSC1 PF10447.4 gi|156937558|ref|YP_001435354.1| - 0.22 11.4 1.7 15 5.6 0.6 3.3 3 1 0 3 3 3 0 Exosome component EXOSC1/CSL4 AAA_18 PF13238.1 gi|156937559|ref|YP_001435355.1| - 7e-16 58.7 0.3 9.7e-16 58.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|156937559|ref|YP_001435355.1| - 1.9e-09 38.3 0.7 3.3e-09 37.6 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|156937559|ref|YP_001435355.1| - 3.9e-08 33.2 0.1 6.7e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|156937559|ref|YP_001435355.1| - 8.4e-08 32.2 0.1 1.2e-07 31.7 0.1 1.3 1 0 0 1 1 1 1 Adenylate kinase Cytidylate_kin2 PF13189.1 gi|156937559|ref|YP_001435355.1| - 0.00026 20.9 2.8 0.0016 18.3 1.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family SKI PF01202.17 gi|156937559|ref|YP_001435355.1| - 0.00075 19.3 0.9 0.0027 17.5 0.6 1.8 1 1 0 1 1 1 1 Shikimate kinase CoaE PF01121.15 gi|156937559|ref|YP_001435355.1| - 0.033 13.5 1.4 4.3 6.6 0.2 2.3 1 1 1 2 2 2 0 Dephospho-CoA kinase Zeta_toxin PF06414.7 gi|156937559|ref|YP_001435355.1| - 0.038 13.0 0.2 0.053 12.6 0.2 1.3 1 1 0 1 1 1 0 Zeta toxin Ribosomal_S8e PF01201.17 gi|156937560|ref|YP_001435356.1| - 1.4e-36 125.5 4.2 1.6e-36 125.4 2.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.12 gi|156937561|ref|YP_001435357.1| - 4.5e-23 81.6 0.0 5.2e-23 81.4 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein TF_Zn_Ribbon PF08271.7 gi|156937563|ref|YP_001435359.1| - 1.1e-09 37.4 1.3 2.7e-09 36.1 0.9 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|156937563|ref|YP_001435359.1| - 0.0013 17.9 1.9 0.0014 17.7 0.6 1.7 2 0 0 2 2 2 1 zinc-ribbon domain RRN7 PF11781.3 gi|156937563|ref|YP_001435359.1| - 0.0015 17.9 0.4 0.0029 17.0 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|156937563|ref|YP_001435359.1| - 0.0024 17.2 1.3 0.006 16.0 0.9 1.7 1 0 0 1 1 1 1 A2L zinc ribbon domain RPOL_N PF14700.1 gi|156937563|ref|YP_001435359.1| - 0.019 14.2 0.4 0.13 11.4 0.6 1.8 1 1 1 2 2 2 0 DNA-directed RNA polymerase N-terminal DUF3510 PF12022.3 gi|156937563|ref|YP_001435359.1| - 0.043 13.9 0.0 0.096 12.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) Peptidase_S64 PF08192.6 gi|156937563|ref|YP_001435359.1| - 0.055 11.8 0.0 0.086 11.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S64 RPA_interact_C PF14768.1 gi|156937563|ref|YP_001435359.1| - 0.12 12.8 0.1 0.31 11.4 0.1 1.7 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DZR PF12773.2 gi|156937563|ref|YP_001435359.1| - 0.12 12.1 0.2 0.36 10.6 0.1 1.7 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|156937563|ref|YP_001435359.1| - 0.13 11.8 1.4 0.28 10.7 0.9 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.6 gi|156937563|ref|YP_001435359.1| - 0.14 11.8 0.5 0.35 10.5 0.4 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.1 gi|156937563|ref|YP_001435359.1| - 0.4 10.9 2.9 5.1 7.4 1.6 2.8 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain DNA_ligase_ZBD PF03119.11 gi|156937563|ref|YP_001435359.1| - 1 9.1 3.2 0.57 9.9 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|156937563|ref|YP_001435359.1| - 2.4 8.2 4.0 3.6 7.6 0.9 2.6 2 1 1 3 3 3 0 Zinc ribbon domain 2TM PF13239.1 gi|156937564|ref|YP_001435360.1| - 2.2 8.3 6.1 1.3 9.0 2.8 1.7 1 1 1 2 2 2 0 2TM domain Cullin PF00888.17 gi|156937565|ref|YP_001435361.1| - 0.09 11.2 0.5 0.17 10.3 0.3 1.5 1 1 0 1 1 1 0 Cullin family DUF3554 PF12074.3 gi|156937565|ref|YP_001435361.1| - 0.16 11.3 8.3 0.037 13.4 3.1 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF3554) His_biosynth PF00977.16 gi|156937566|ref|YP_001435362.1| - 3.7e-94 314.2 0.7 4.2e-94 314.1 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|156937566|ref|YP_001435362.1| - 8.9e-07 28.3 2.8 0.00057 19.1 0.8 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase Dus PF01207.12 gi|156937566|ref|YP_001435362.1| - 1.3e-06 27.5 0.0 0.00077 18.3 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|156937566|ref|YP_001435362.1| - 1.7e-06 27.2 0.4 0.012 14.7 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|156937566|ref|YP_001435362.1| - 6.1e-06 25.6 0.2 4.1e-05 22.9 0.1 2.0 2 0 0 2 2 2 1 PcrB family ThiG PF05690.9 gi|156937566|ref|YP_001435362.1| - 1.6e-05 24.1 0.3 0.0062 15.6 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|156937566|ref|YP_001435362.1| - 0.0037 16.2 0.0 0.079 11.9 0.0 2.2 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|156937566|ref|YP_001435362.1| - 0.014 14.2 0.1 0.041 12.7 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PEP_mutase PF13714.1 gi|156937566|ref|YP_001435362.1| - 0.024 13.8 0.8 4.9 6.3 0.1 3.0 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase G3P_antiterm PF04309.7 gi|156937566|ref|YP_001435362.1| - 0.065 12.2 0.4 0.37 9.8 0.0 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|156937566|ref|YP_001435362.1| - 0.07 11.9 0.6 0.73 8.6 0.0 2.4 1 1 1 2 2 2 0 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|156937566|ref|YP_001435362.1| - 0.072 11.6 0.1 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain QRPTase_C PF01729.14 gi|156937566|ref|YP_001435362.1| - 0.085 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF561 PF04481.7 gi|156937566|ref|YP_001435362.1| - 0.097 11.6 0.0 8.8 5.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) DUF2818 PF10993.3 gi|156937567|ref|YP_001435363.1| - 0.14 12.6 3.3 2.2 8.8 2.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2818) ABC2_membrane_3 PF12698.2 gi|156937567|ref|YP_001435363.1| - 1.5 7.7 12.8 1.8 7.5 8.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein FUSC PF04632.7 gi|156937567|ref|YP_001435363.1| - 4.2 5.6 7.3 4.9 5.4 5.0 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Glycos_transf_4 PF00953.16 gi|156937568|ref|YP_001435364.1| - 6.1e-34 117.1 17.2 1.3e-33 116.0 11.9 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 4 DUF2561 PF10812.3 gi|156937568|ref|YP_001435364.1| - 0.027 14.0 1.7 0.066 12.8 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2561) Sec23_trunk PF04811.10 gi|156937569|ref|YP_001435365.1| - 0.0084 15.4 0.0 0.0094 15.3 0.0 1.1 1 0 0 1 1 1 1 Sec23/Sec24 trunk domain Lipoprotein_3 PF00938.12 gi|156937569|ref|YP_001435365.1| - 0.13 12.0 0.1 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Lipoprotein Fucose_iso_C PF02952.12 gi|156937570|ref|YP_001435366.1| - 0.0039 16.7 0.0 0.033 13.7 0.0 2.2 1 1 0 1 1 1 1 L-fucose isomerase, C-terminal domain Arabinose_Isome PF02610.10 gi|156937570|ref|YP_001435366.1| - 0.011 14.7 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 L-arabinose isomerase Ribosomal_L21e PF01157.13 gi|156937571|ref|YP_001435367.1| - 4.7e-23 80.8 0.1 5.2e-23 80.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e PTPS PF01242.14 gi|156937572|ref|YP_001435368.1| - 1.4e-21 76.3 0.0 1.7e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase IMCp PF12314.3 gi|156937573|ref|YP_001435369.1| - 0.027 14.6 0.3 0.07 13.2 0.0 1.7 2 0 0 2 2 2 0 Inner membrane complex protein Cas_APE2256 PF09651.5 gi|156937574|ref|YP_001435370.1| - 0.069 12.8 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) KH_1 PF00013.24 gi|156937575|ref|YP_001435371.1| - 2.7e-08 33.3 8.7 9.6e-08 31.5 3.7 2.2 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|156937575|ref|YP_001435371.1| - 0.0057 16.2 2.6 0.02 14.5 1.1 2.1 2 0 0 2 2 2 1 KH domain NTP_transf_2 PF01909.18 gi|156937576|ref|YP_001435372.1| - 0.00018 21.7 0.9 0.00031 21.0 0.0 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain Sigma70_r4_2 PF08281.7 gi|156937576|ref|YP_001435372.1| - 0.13 11.7 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 SsgA PF04686.7 gi|156937577|ref|YP_001435373.1| - 0.055 13.1 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Streptomyces sporulation and cell division protein, SsgA NAD_binding_3 PF03447.11 gi|156937579|ref|YP_001435375.1| - 5.8e-05 23.4 1.1 0.0001 22.6 0.8 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DUF108 PF01958.13 gi|156937579|ref|YP_001435375.1| - 0.00036 20.7 0.0 0.00065 19.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 ATP_bind_4 PF01902.12 gi|156937580|ref|YP_001435376.1| - 2.2e-49 167.7 0.0 2.5e-49 167.6 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|156937580|ref|YP_001435376.1| - 0.099 11.9 0.0 0.19 10.9 0.0 1.5 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC SIS PF01380.17 gi|156937581|ref|YP_001435377.1| - 6.7e-20 71.0 0.2 1.4e-19 70.0 0.0 1.6 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.1 gi|156937581|ref|YP_001435377.1| - 3.1e-11 43.1 2.2 3.3e-08 33.3 0.5 2.3 1 1 1 2 2 2 2 SIS domain AlaDh_PNT_C PF01262.16 gi|156937581|ref|YP_001435377.1| - 0.00037 20.1 2.7 0.018 14.6 0.0 2.2 1 1 1 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Usp PF00582.21 gi|156937581|ref|YP_001435377.1| - 0.012 15.7 0.2 0.034 14.3 0.0 1.7 2 0 0 2 2 2 0 Universal stress protein family PRMT5 PF05185.11 gi|156937581|ref|YP_001435377.1| - 0.33 9.8 2.0 1.5 7.6 0.0 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Radical_SAM PF04055.16 gi|156937582|ref|YP_001435378.1| - 5.7e-17 62.3 0.1 1.9e-15 57.4 0.0 2.1 1 1 1 2 2 2 2 Radical SAM superfamily DUF1848 PF08902.6 gi|156937582|ref|YP_001435378.1| - 3.6e-06 26.7 0.1 0.048 13.1 1.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) Fer4_14 PF13394.1 gi|156937582|ref|YP_001435378.1| - 0.055 13.4 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain THUMP PF02926.12 gi|156937582|ref|YP_001435378.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 THUMP domain EMG1 PF03587.9 gi|156937584|ref|YP_001435380.1| - 5.4e-48 162.9 0.0 6.1e-48 162.8 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Vel1p PF10339.4 gi|156937585|ref|YP_001435381.1| - 0.078 12.1 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Yeast-specific zinc responsive Asp-B-Hydro_N PF05279.6 gi|156937585|ref|YP_001435381.1| - 0.19 11.5 1.7 0.24 11.2 1.2 1.1 1 0 0 1 1 1 0 Aspartyl beta-hydroxylase N-terminal region Ribosomal_L37ae PF01780.14 gi|156937586|ref|YP_001435382.1| - 9.1e-30 102.3 5.5 9.5e-30 102.3 3.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|156937586|ref|YP_001435382.1| - 0.00027 20.6 4.3 0.00036 20.2 2.8 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156937586|ref|YP_001435382.1| - 0.00057 19.4 0.2 0.00077 19.0 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4379 PF14311.1 gi|156937586|ref|YP_001435382.1| - 0.00077 19.2 3.6 0.18 11.6 0.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4379) DUF1610 PF07754.6 gi|156937586|ref|YP_001435382.1| - 0.0025 17.9 1.8 0.47 10.6 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Sgf11 PF08209.6 gi|156937586|ref|YP_001435382.1| - 0.0053 16.0 1.9 4.5 6.6 0.0 3.3 3 0 0 3 3 3 1 Sgf11 (transcriptional regulation protein) zf-C2H2 PF00096.21 gi|156937586|ref|YP_001435382.1| - 0.0094 16.2 3.0 0.94 9.9 0.1 2.3 2 0 0 2 2 2 1 Zinc finger, C2H2 type CpXC PF14353.1 gi|156937586|ref|YP_001435382.1| - 0.012 15.6 0.7 0.18 11.7 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.1 gi|156937586|ref|YP_001435382.1| - 0.019 14.9 2.1 0.32 11.0 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_4 PF13894.1 gi|156937586|ref|YP_001435382.1| - 0.022 15.0 1.8 1.9 9.0 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.1 gi|156937586|ref|YP_001435382.1| - 0.04 13.1 3.4 1.4 8.2 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|156937586|ref|YP_001435382.1| - 0.043 13.4 3.8 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.1 gi|156937586|ref|YP_001435382.1| - 0.045 14.0 5.9 1.6 9.1 0.9 2.2 1 1 1 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|156937586|ref|YP_001435382.1| - 0.047 13.6 0.6 9 6.3 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|156937586|ref|YP_001435382.1| - 0.064 12.7 3.6 1.2 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHCC PF10276.4 gi|156937586|ref|YP_001435382.1| - 0.13 12.1 2.3 0.24 11.2 0.3 2.0 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2_6 PF13912.1 gi|156937586|ref|YP_001435382.1| - 0.41 10.6 2.6 13 5.8 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-tcix PF14952.1 gi|156937586|ref|YP_001435382.1| - 2 7.8 6.5 2.2 7.6 0.5 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Brix PF04427.13 gi|156937587|ref|YP_001435383.1| - 6.1e-14 52.1 0.0 6.2e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|156937588|ref|YP_001435384.1| - 6.6e-14 51.7 0.0 7.3e-14 51.5 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 ATP_bind_1 PF03029.12 gi|156937589|ref|YP_001435385.1| - 1.9e-50 171.6 0.0 2.2e-50 171.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|156937589|ref|YP_001435385.1| - 5.9e-07 29.0 0.0 9.3e-07 28.4 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|156937589|ref|YP_001435385.1| - 0.00011 21.6 0.0 0.44 9.9 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|156937589|ref|YP_001435385.1| - 0.00013 21.4 0.1 0.00043 19.7 0.0 1.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|156937589|ref|YP_001435385.1| - 0.00015 21.7 0.0 0.0006 19.7 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|156937589|ref|YP_001435385.1| - 0.00021 21.3 0.0 0.00028 20.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|156937589|ref|YP_001435385.1| - 0.00043 19.1 0.3 0.013 14.3 0.0 2.3 2 1 0 2 2 2 1 ArgK protein Gtr1_RagA PF04670.7 gi|156937589|ref|YP_001435385.1| - 0.0024 17.0 0.2 0.0085 15.2 0.1 1.8 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region SRP54 PF00448.17 gi|156937589|ref|YP_001435385.1| - 0.0024 17.3 0.0 0.21 11.0 0.0 2.6 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|156937589|ref|YP_001435385.1| - 0.011 15.8 0.0 0.068 13.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|156937589|ref|YP_001435385.1| - 0.013 14.7 0.1 0.42 9.7 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function, DUF258 DUF2813 PF11398.3 gi|156937589|ref|YP_001435385.1| - 0.053 12.6 0.1 0.093 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) NACHT PF05729.7 gi|156937589|ref|YP_001435385.1| - 0.12 12.0 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|156937589|ref|YP_001435385.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|156937589|ref|YP_001435385.1| - 0.17 11.4 0.2 0.31 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MRAP PF15183.1 gi|156937591|ref|YP_001435387.1| - 0.14 11.7 0.6 0.15 11.6 0.4 1.2 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family Peptidase_M48 PF01435.13 gi|156937592|ref|YP_001435388.1| - 2.7e-38 131.8 0.0 3.9e-38 131.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|156937592|ref|YP_001435388.1| - 0.0004 19.4 0.0 0.0007 18.6 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF2244 PF10003.4 gi|156937592|ref|YP_001435388.1| - 0.62 9.4 7.9 1.3 8.3 2.3 2.7 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) DUF3040 PF11239.3 gi|156937592|ref|YP_001435388.1| - 1.8 8.6 4.5 4.8 7.2 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) DUF2892 PF11127.3 gi|156937592|ref|YP_001435388.1| - 5.1 7.0 14.7 0.043 13.6 1.8 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2892) MFS_1 PF07690.11 gi|156937593|ref|YP_001435389.1| - 6e-09 35.0 33.6 2.2e-07 29.9 23.3 2.1 1 1 0 1 1 1 1 Major Facilitator Superfamily Fer4_11 PF13247.1 gi|156937594|ref|YP_001435390.1| - 9.6e-28 95.9 16.7 2e-27 94.9 8.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156937594|ref|YP_001435390.1| - 7e-23 80.7 0.0 1.3e-09 38.2 0.0 2.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156937594|ref|YP_001435390.1| - 3.4e-14 52.3 23.7 4e-08 32.9 5.7 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937594|ref|YP_001435390.1| - 9.5e-12 44.1 35.1 2.2e-06 27.2 1.5 4.7 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156937594|ref|YP_001435390.1| - 1.2e-11 44.7 26.9 6e-07 29.6 6.1 3.4 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937594|ref|YP_001435390.1| - 1.4e-11 43.6 40.2 6.8e-06 25.7 2.9 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|156937594|ref|YP_001435390.1| - 1.8e-11 43.1 42.1 6.3e-07 28.7 3.1 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156937594|ref|YP_001435390.1| - 1.8e-08 34.2 20.5 5.9e-05 23.0 2.3 3.4 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|156937594|ref|YP_001435390.1| - 7.9e-08 32.3 46.2 0.00059 20.2 1.5 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156937594|ref|YP_001435390.1| - 6.5e-06 26.0 35.3 0.0053 16.9 1.8 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156937594|ref|YP_001435390.1| - 4.2e-05 23.8 23.7 0.012 15.9 0.1 4.6 2 1 3 5 5 5 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156937594|ref|YP_001435390.1| - 4.2e-05 24.1 26.0 0.48 11.2 1.0 4.4 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|156937594|ref|YP_001435390.1| - 0.00027 20.7 28.6 0.056 13.3 1.7 4.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156937594|ref|YP_001435390.1| - 0.0039 17.5 28.8 0.0047 17.3 1.1 4.4 3 1 2 5 5 5 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156937594|ref|YP_001435390.1| - 0.013 16.0 25.7 0.13 12.8 0.4 4.2 3 1 0 3 3 3 0 4Fe-4S single cluster domain DUF3179 PF11376.3 gi|156937594|ref|YP_001435390.1| - 0.013 14.6 0.0 3.2 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3179) HTH_31 PF13560.1 gi|156937594|ref|YP_001435390.1| - 0.033 14.3 0.0 0.065 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4_13 PF13370.1 gi|156937594|ref|YP_001435390.1| - 0.055 13.8 3.7 0.055 13.8 2.5 4.1 4 1 1 5 5 5 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|156937594|ref|YP_001435390.1| - 1 9.0 19.3 4.9 6.8 0.0 4.2 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.17 gi|156937595|ref|YP_001435391.1| - 5.9e-31 107.6 0.0 5.8e-30 104.3 0.0 2.2 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.11 gi|156937595|ref|YP_001435391.1| - 1.6e-10 40.6 1.0 3.8e-10 39.4 0.7 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.16 gi|156937595|ref|YP_001435391.1| - 2.1e-07 30.7 0.0 4.8e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain NrfD PF03916.9 gi|156937596|ref|YP_001435392.1| - 8.5e-07 28.6 14.1 8.5e-07 28.6 9.7 2.9 2 1 2 4 4 4 1 Polysulphide reductase, NrfD FMN_dh PF01070.13 gi|156937597|ref|YP_001435393.1| - 5.1e-23 81.4 0.0 4.4e-17 61.9 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|156937597|ref|YP_001435393.1| - 0.00034 19.6 0.7 0.00034 19.6 0.5 1.8 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|156937597|ref|YP_001435393.1| - 0.025 13.5 0.3 0.052 12.4 0.2 1.5 1 0 0 1 1 1 0 Conserved region in glutamate synthase IGPD PF00475.13 gi|156937598|ref|YP_001435394.1| - 9.7e-48 161.7 0.4 1.2e-47 161.4 0.3 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase UPF0203 PF05254.7 gi|156937598|ref|YP_001435394.1| - 0.018 14.9 0.0 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0203) tRNA-synt_His PF13393.1 gi|156937598|ref|YP_001435394.1| - 0.037 13.0 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Histidyl-tRNA synthetase DUF2341 PF10102.4 gi|156937599|ref|YP_001435395.1| - 1.5e-32 111.5 0.1 4.2e-15 55.6 0.1 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF2341) WD40 PF00400.27 gi|156937601|ref|YP_001435397.1| - 0.0002 21.1 0.0 0.11 12.4 0.0 3.8 4 0 0 4 4 4 1 WD domain, G-beta repeat LVIVD PF08309.6 gi|156937601|ref|YP_001435397.1| - 0.00084 18.2 11.5 0.011 14.6 0.1 4.0 4 0 0 4 4 4 2 LVIVD repeat PQQ_2 PF13360.1 gi|156937601|ref|YP_001435397.1| - 0.011 15.2 0.1 0.24 10.8 0.0 2.6 2 2 1 3 3 3 0 PQQ-like domain PQQ_3 PF13570.1 gi|156937601|ref|YP_001435397.1| - 0.017 15.3 4.0 5.3 7.4 0.3 3.8 4 0 0 4 4 4 0 PQQ-like domain Beta_propel PF09826.4 gi|156937601|ref|YP_001435397.1| - 0.13 10.6 0.0 0.2 9.9 0.0 1.3 1 0 0 1 1 1 0 Beta propeller domain Myb_DNA-binding PF00249.26 gi|156937602|ref|YP_001435398.1| - 0.052 13.6 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Myb-like DNA-binding domain PAP_fibrillin PF04755.7 gi|156937603|ref|YP_001435399.1| - 3.7 7.2 6.5 3.6 7.2 2.0 2.2 1 1 1 2 2 2 0 PAP_fibrillin HTH_9 PF08221.6 gi|156937604|ref|YP_001435400.1| - 0.72 9.7 4.5 1.3 8.9 3.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Fer4 PF00037.22 gi|156937605|ref|YP_001435401.1| - 2.4e-14 52.2 15.0 7.4e-08 31.6 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156937605|ref|YP_001435401.1| - 4.7e-12 45.9 10.1 5.9e-12 45.6 7.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156937605|ref|YP_001435401.1| - 2e-11 44.0 9.5 2.7e-05 24.4 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937605|ref|YP_001435401.1| - 2.1e-11 43.1 14.6 2.5e-06 27.1 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156937605|ref|YP_001435401.1| - 5.4e-11 42.1 11.8 1.3e-05 24.9 1.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156937605|ref|YP_001435401.1| - 2.7e-10 39.9 13.5 2e-09 37.1 9.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937605|ref|YP_001435401.1| - 3.3e-09 36.1 15.4 0.00018 21.1 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156937605|ref|YP_001435401.1| - 2.3e-08 34.6 10.2 0.00016 22.3 2.2 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|156937605|ref|YP_001435401.1| - 2.5e-08 34.3 13.8 8.9e-05 22.9 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|156937605|ref|YP_001435401.1| - 3.2e-08 33.4 8.1 5e-08 32.8 5.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156937605|ref|YP_001435401.1| - 3.5e-08 33.1 14.1 0.00058 19.9 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|156937605|ref|YP_001435401.1| - 1.2e-07 31.9 13.1 3.6e-07 30.4 9.1 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|156937605|ref|YP_001435401.1| - 1.4e-06 28.4 18.4 0.00046 20.5 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|156937605|ref|YP_001435401.1| - 1.2e-05 25.6 16.2 0.0028 18.0 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156937605|ref|YP_001435401.1| - 0.00048 20.4 13.4 0.017 15.4 9.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|156937605|ref|YP_001435401.1| - 0.00049 19.9 5.3 0.1 12.5 0.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain FIST PF08495.5 gi|156937605|ref|YP_001435401.1| - 0.29 10.2 2.4 3.5 6.7 0.2 2.0 1 1 1 2 2 2 0 FIST N domain GCM PF03615.10 gi|156937605|ref|YP_001435401.1| - 0.36 10.4 4.4 2.5 7.6 0.4 2.1 2 0 0 2 2 2 0 GCM motif protein LIM PF00412.17 gi|156937605|ref|YP_001435401.1| - 1.3 9.1 7.6 2.3 8.3 0.3 2.1 1 1 1 2 2 2 0 LIM domain c-SKI_SMAD_bind PF08782.5 gi|156937605|ref|YP_001435401.1| - 1.4 9.0 7.7 3.7 7.7 0.6 2.1 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Prefoldin_2 PF01920.15 gi|156937606|ref|YP_001435402.1| - 1.1e-21 76.6 20.2 1.2e-21 76.4 14.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit FlaC_arch PF05377.6 gi|156937606|ref|YP_001435402.1| - 0.0023 17.7 8.6 0.013 15.3 3.0 2.3 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF4460 PF14687.1 gi|156937606|ref|YP_001435402.1| - 0.038 13.7 3.1 0.047 13.4 2.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4460) DUF3166 PF11365.3 gi|156937606|ref|YP_001435402.1| - 0.041 14.3 1.0 0.041 14.3 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3166) PilJ PF13675.1 gi|156937606|ref|YP_001435402.1| - 0.073 13.3 6.5 3.4 8.0 4.5 2.1 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF3825 PF12873.2 gi|156937606|ref|YP_001435402.1| - 0.078 12.1 0.0 0.093 11.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3825) HDV_ag PF01517.13 gi|156937606|ref|YP_001435402.1| - 0.1 12.2 3.1 0.19 11.4 2.2 1.4 1 1 0 1 1 1 0 Hepatitis delta virus delta antigen DNA_ligase_A_C PF04679.10 gi|156937606|ref|YP_001435402.1| - 0.14 12.6 0.5 0.23 11.8 0.3 1.4 1 1 0 1 1 1 0 ATP dependent DNA ligase C terminal region Prominin PF05478.6 gi|156937606|ref|YP_001435402.1| - 0.17 9.4 4.7 0.27 8.7 3.3 1.3 1 0 0 1 1 1 0 Prominin DUF972 PF06156.8 gi|156937606|ref|YP_001435402.1| - 0.18 12.1 14.3 0.24 11.7 4.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) cwf21 PF08312.7 gi|156937606|ref|YP_001435402.1| - 0.2 11.5 5.6 0.42 10.5 3.0 2.5 1 1 1 2 2 2 0 cwf21 domain IncA PF04156.9 gi|156937606|ref|YP_001435402.1| - 0.2 11.2 19.6 3.2 7.3 13.6 1.9 1 1 0 1 1 1 0 IncA protein DUF1877 PF08974.5 gi|156937606|ref|YP_001435402.1| - 0.23 11.1 5.2 2.1 7.9 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1877) EzrA PF06160.7 gi|156937606|ref|YP_001435402.1| - 0.32 9.1 12.7 0.41 8.7 8.8 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA PspA_IM30 PF04012.7 gi|156937606|ref|YP_001435402.1| - 0.43 9.8 15.9 2.5 7.3 11.0 1.8 1 1 0 1 1 1 0 PspA/IM30 family Occludin_ELL PF07303.8 gi|156937606|ref|YP_001435402.1| - 0.45 11.2 11.2 1.2 9.9 7.7 1.7 1 1 0 1 1 1 0 Occludin homology domain Prefoldin PF02996.12 gi|156937606|ref|YP_001435402.1| - 0.45 10.1 13.8 1.6 8.4 2.1 2.5 2 1 0 2 2 2 0 Prefoldin subunit Cep57_MT_bd PF06657.8 gi|156937606|ref|YP_001435402.1| - 0.55 10.2 15.7 0.52 10.3 3.9 3.0 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Myosin_tail_1 PF01576.14 gi|156937606|ref|YP_001435402.1| - 0.7 7.5 20.6 0.38 8.4 5.8 2.0 1 1 1 2 2 2 0 Myosin tail DUF4407 PF14362.1 gi|156937606|ref|YP_001435402.1| - 0.95 8.3 4.2 2.1 7.2 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3181 PF11378.3 gi|156937606|ref|YP_001435402.1| - 1 9.4 5.2 0.34 10.9 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3181) YlqD PF11068.3 gi|156937606|ref|YP_001435402.1| - 1 9.3 19.2 2.3 8.2 6.8 2.2 1 1 1 2 2 2 0 YlqD protein Filament PF00038.16 gi|156937606|ref|YP_001435402.1| - 1.2 8.5 15.7 3.8 6.8 10.9 1.7 1 1 0 1 1 1 0 Intermediate filament protein ATG16 PF08614.6 gi|156937606|ref|YP_001435402.1| - 1.2 8.8 11.6 0.11 12.2 2.5 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Sas10_Utp3 PF04000.10 gi|156937606|ref|YP_001435402.1| - 1.3 9.2 9.2 11 6.2 4.4 2.8 1 1 1 2 2 2 0 Sas10/Utp3/C1D family CENP-Q PF13094.1 gi|156937606|ref|YP_001435402.1| - 1.8 8.5 13.0 2.6 8.0 9.0 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit vATP-synt_E PF01991.13 gi|156937606|ref|YP_001435402.1| - 2.3 7.4 16.8 4.9 6.3 11.6 1.6 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Fmp27_WPPW PF10359.4 gi|156937606|ref|YP_001435402.1| - 2.6 6.3 7.0 3.3 6.0 4.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Syntaxin-6_N PF09177.6 gi|156937606|ref|YP_001435402.1| - 2.7 8.4 9.0 9.3 6.7 3.3 2.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Peptidase_C65 PF10275.4 gi|156937606|ref|YP_001435402.1| - 2.8 7.2 8.0 3.2 7.0 0.6 2.0 1 1 1 2 2 2 0 Peptidase C65 Otubain DivIC PF04977.10 gi|156937606|ref|YP_001435402.1| - 3.1 7.3 21.0 0.92 9.0 5.6 2.2 2 0 0 2 2 2 0 Septum formation initiator Spc7 PF08317.6 gi|156937606|ref|YP_001435402.1| - 3.2 6.3 14.1 4 5.9 9.8 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein GAS PF13851.1 gi|156937606|ref|YP_001435402.1| - 3.7 6.6 18.1 6 6.0 12.6 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF964 PF06133.6 gi|156937606|ref|YP_001435402.1| - 4.8 7.2 15.3 4.1 7.4 2.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF964) AAA_13 PF13166.1 gi|156937606|ref|YP_001435402.1| - 4.9 5.4 8.3 7.3 4.9 5.8 1.2 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|156937606|ref|YP_001435402.1| - 5.2 4.2 12.5 6.8 3.8 8.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CCDC155 PF14662.1 gi|156937606|ref|YP_001435402.1| - 5.3 6.5 18.7 9.2 5.8 12.9 1.3 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Adeno_PIX PF03955.9 gi|156937606|ref|YP_001435402.1| - 5.6 7.5 8.8 5.4 7.5 0.5 2.1 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) DUF948 PF06103.6 gi|156937606|ref|YP_001435402.1| - 6 6.8 7.3 2.8 7.8 1.3 2.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|156937606|ref|YP_001435402.1| - 6.2 6.6 9.6 9 6.1 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Fzo_mitofusin PF04799.8 gi|156937606|ref|YP_001435402.1| - 6.5 6.0 10.7 1.7 8.0 2.0 2.1 1 1 1 2 2 2 0 fzo-like conserved region Uso1_p115_C PF04871.8 gi|156937606|ref|YP_001435402.1| - 8.3 6.3 17.8 15 5.5 12.4 1.4 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region CorA PF01544.13 gi|156937606|ref|YP_001435402.1| - 8.9 5.2 8.8 1.4 7.9 1.0 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein FliD_N PF02465.13 gi|156937606|ref|YP_001435402.1| - 9.2 6.7 9.7 4.6 7.6 2.5 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Pepsin-I3 PF06394.8 gi|156937606|ref|YP_001435402.1| - 9.2 6.0 10.1 1.2 8.8 3.4 2.1 2 1 0 2 2 2 0 Pepsin inhibitor-3-like repeated domain DUF2968 PF11180.3 gi|156937606|ref|YP_001435402.1| - 9.2 5.5 14.3 7.8 5.8 5.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) BLOC1_2 PF10046.4 gi|156937606|ref|YP_001435402.1| - 9.7 6.4 11.8 8.1 6.6 1.2 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DHHA1 PF02272.14 gi|156937607|ref|YP_001435403.1| - 7.8e-12 44.7 0.1 2e-11 43.4 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|156937607|ref|YP_001435403.1| - 2.5e-11 43.3 0.0 9.2e-11 41.5 0.0 1.8 1 1 0 1 1 1 1 DHH family FliG_M PF14841.1 gi|156937607|ref|YP_001435403.1| - 0.004 17.1 1.0 1.9 8.5 0.0 3.1 3 0 0 3 3 3 2 FliG middle domain Glyco_tranf_2_3 PF13641.1 gi|156937608|ref|YP_001435404.1| - 2.3e-25 89.7 0.0 5.5e-25 88.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|156937608|ref|YP_001435404.1| - 2.4e-17 63.3 0.1 4.6e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|156937608|ref|YP_001435404.1| - 6.6e-12 45.4 0.0 1e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|156937608|ref|YP_001435404.1| - 0.003 16.7 0.0 0.014 14.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 FAM124 PF15067.1 gi|156937608|ref|YP_001435404.1| - 0.17 11.2 0.0 18 4.6 0.0 2.6 2 1 0 2 2 2 0 FAM124 family DUF758 PF05527.6 gi|156937609|ref|YP_001435405.1| - 0.023 14.3 0.0 0.27 10.8 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF758) TGT PF01702.13 gi|156937610|ref|YP_001435406.1| - 0.0013 18.1 0.0 0.0016 17.7 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase UPF0020 PF01170.13 gi|156937611|ref|YP_001435407.1| - 4.3e-44 150.2 0.0 5.9e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|156937611|ref|YP_001435407.1| - 1.4e-15 57.3 0.0 2.4e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|156937611|ref|YP_001435407.1| - 4.4e-09 36.3 0.2 1.1e-08 35.1 0.1 1.7 1 0 0 1 1 1 1 THUMP domain MTS PF05175.9 gi|156937611|ref|YP_001435407.1| - 7.4e-06 25.4 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|156937611|ref|YP_001435407.1| - 7e-05 22.4 0.0 9.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|156937611|ref|YP_001435407.1| - 0.0017 17.9 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Eco57I PF07669.6 gi|156937611|ref|YP_001435407.1| - 0.0073 16.6 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase PrmA PF06325.8 gi|156937611|ref|YP_001435407.1| - 0.0083 15.2 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|156937611|ref|YP_001435407.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|156937611|ref|YP_001435407.1| - 0.038 14.5 0.0 0.099 13.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain ThiS PF02597.15 gi|156937613|ref|YP_001435409.1| - 1.1e-08 35.3 0.0 1.5e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 ThiS family TACC PF05010.9 gi|156937613|ref|YP_001435409.1| - 0.094 12.4 0.1 0.098 12.4 0.1 1.1 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) FAD_binding_2 PF00890.19 gi|156937614|ref|YP_001435410.1| - 0.0068 15.2 0.0 0.0088 14.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|156937614|ref|YP_001435410.1| - 0.031 13.1 0.0 0.035 13.0 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase BtpA PF03437.10 gi|156937615|ref|YP_001435411.1| - 9e-78 261.0 0.1 1e-77 260.8 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|156937615|ref|YP_001435411.1| - 0.063 11.7 0.1 0.26 9.7 0.0 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain RA PF00788.18 gi|156937616|ref|YP_001435412.1| - 0.27 11.7 1.3 10 6.6 0.1 2.1 1 1 1 2 2 2 0 Ras association (RalGDS/AF-6) domain DUF447 PF04289.7 gi|156937617|ref|YP_001435413.1| - 6.1e-06 25.9 0.0 2.4e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF447) HypA PF01155.14 gi|156937618|ref|YP_001435414.1| - 4.9e-32 109.9 0.1 5.7e-32 109.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|156937618|ref|YP_001435414.1| - 5e-05 22.9 2.4 0.078 12.7 0.0 2.3 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|156937618|ref|YP_001435414.1| - 0.001 18.8 0.3 0.43 10.4 0.0 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|156937618|ref|YP_001435414.1| - 0.0034 16.6 0.4 2.4 7.5 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding TFIIS_C PF01096.13 gi|156937618|ref|YP_001435414.1| - 0.0045 16.5 4.6 0.77 9.4 0.9 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|156937618|ref|YP_001435414.1| - 0.013 15.4 2.3 1 9.3 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|156937618|ref|YP_001435414.1| - 0.02 14.4 3.5 0.49 10.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|156937618|ref|YP_001435414.1| - 0.035 13.8 3.1 1 9.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|156937618|ref|YP_001435414.1| - 0.055 12.9 0.5 4.1 6.9 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|156937618|ref|YP_001435414.1| - 0.075 13.3 0.1 3.8 7.8 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|156937618|ref|YP_001435414.1| - 0.077 12.6 2.3 1.6 8.5 0.1 2.2 1 1 0 2 2 2 0 Transcription elongation factor Elf1 like zf-CSL PF05207.8 gi|156937618|ref|YP_001435414.1| - 0.1 12.1 0.1 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 CSL zinc finger OrfB_Zn_ribbon PF07282.6 gi|156937618|ref|YP_001435414.1| - 0.1 12.2 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|156937618|ref|YP_001435414.1| - 0.11 12.0 1.7 7.9 6.1 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-3CxxC PF13695.1 gi|156937618|ref|YP_001435414.1| - 0.15 12.3 0.5 0.33 11.1 0.3 1.6 1 1 0 1 1 1 0 Zinc-binding domain zf-ZPR1 PF03367.8 gi|156937618|ref|YP_001435414.1| - 0.18 10.9 2.8 3.9 6.5 0.9 2.5 2 1 1 3 3 3 0 ZPR1 zinc-finger domain zf-H2C2_2 PF13465.1 gi|156937618|ref|YP_001435414.1| - 0.38 11.1 4.0 0.57 10.5 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|156937618|ref|YP_001435414.1| - 4.2 7.1 6.7 2.4 7.9 0.8 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Radical_SAM PF04055.16 gi|156937619|ref|YP_001435415.1| - 5e-17 62.5 1.5 7.9e-17 61.9 0.0 2.1 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|156937619|ref|YP_001435415.1| - 1.1e-07 31.8 0.1 4.3e-07 29.9 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|156937619|ref|YP_001435415.1| - 1.6e-05 25.0 0.1 5.4e-05 23.3 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Hemopexin PF00045.14 gi|156937620|ref|YP_001435416.1| - 1.5 8.5 7.0 5.2 6.8 2.8 2.8 3 1 0 3 3 3 0 Hemopexin HTH_12 PF08461.5 gi|156937621|ref|YP_001435417.1| - 0.00097 18.8 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TF_Zn_Ribbon PF08271.7 gi|156937621|ref|YP_001435417.1| - 0.0052 16.0 0.3 0.79 9.0 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding HTH_11 PF08279.7 gi|156937621|ref|YP_001435417.1| - 0.0087 15.6 0.1 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain DZR PF12773.2 gi|156937621|ref|YP_001435417.1| - 0.012 15.4 0.6 0.02 14.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|156937621|ref|YP_001435417.1| - 0.028 14.0 0.7 0.043 13.4 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|156937621|ref|YP_001435417.1| - 0.032 13.9 1.5 0.052 13.2 0.8 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_1 PF00130.17 gi|156937621|ref|YP_001435417.1| - 0.047 13.4 2.6 0.091 12.5 1.8 1.5 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rtf2 PF04641.7 gi|156937621|ref|YP_001435417.1| - 0.068 12.3 1.1 0.084 12.0 0.7 1.2 1 1 0 1 1 1 0 Rtf2 RING-finger DUF2072 PF09845.4 gi|156937621|ref|YP_001435417.1| - 0.13 12.1 0.9 0.25 11.2 0.6 1.4 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) HTH_5 PF01022.15 gi|156937621|ref|YP_001435417.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family UPF0547 PF10571.4 gi|156937621|ref|YP_001435417.1| - 0.28 10.8 6.0 1.7 8.3 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|156937621|ref|YP_001435417.1| - 0.29 11.1 4.3 0.76 9.7 3.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|156937621|ref|YP_001435417.1| - 0.72 10.3 3.3 5.3 7.6 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|156937621|ref|YP_001435417.1| - 1.9 8.1 7.3 74 3.0 5.1 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|156937621|ref|YP_001435417.1| - 4.1 7.1 7.8 1.3e+02 2.4 5.4 2.5 1 1 0 1 1 1 0 zinc-ribbon domain CitMHS PF03600.11 gi|156937622|ref|YP_001435418.1| - 2.4e-35 121.7 28.2 9.1e-34 116.5 14.4 1.7 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|156937622|ref|YP_001435418.1| - 3.2e-28 98.8 19.5 4e-28 98.5 13.5 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein DUF2516 PF10724.4 gi|156937622|ref|YP_001435418.1| - 1.1 9.3 13.7 0.24 11.4 1.3 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF2516) CBS PF00571.23 gi|156937624|ref|YP_001435420.1| - 6.9e-06 25.7 0.2 0.00068 19.3 0.0 3.6 4 0 0 4 4 4 1 CBS domain Creatininase PF02633.9 gi|156937625|ref|YP_001435421.1| - 2.3e-23 82.5 0.0 3.6e-23 81.8 0.0 1.3 1 1 0 1 1 1 1 Creatinine amidohydrolase UPF0113 PF03657.8 gi|156937628|ref|YP_001435424.1| - 4e-06 26.5 0.1 4.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu_2 PF13636.1 gi|156937628|ref|YP_001435424.1| - 0.00038 20.5 0.0 0.00049 20.1 0.0 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis zf-TRM13_CCCH PF11722.3 gi|156937628|ref|YP_001435424.1| - 0.13 11.6 0.3 0.72 9.2 0.1 2.0 2 0 0 2 2 2 0 CCCH zinc finger in TRM13 protein Translin PF01997.11 gi|156937629|ref|YP_001435425.1| - 2.5e-31 108.8 4.6 3.1e-31 108.5 3.2 1.1 1 0 0 1 1 1 1 Translin family DUF342 PF03961.8 gi|156937629|ref|YP_001435425.1| - 0.039 12.3 2.3 0.051 11.9 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) RPN7 PF10602.4 gi|156937629|ref|YP_001435425.1| - 0.049 13.0 1.8 0.082 12.2 1.2 1.4 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Flagellar_rod PF05149.7 gi|156937629|ref|YP_001435425.1| - 0.05 12.7 4.5 2.4 7.2 0.4 2.8 1 1 0 2 2 2 0 Paraflagellar rod protein GAS PF13851.1 gi|156937629|ref|YP_001435425.1| - 0.069 12.3 6.0 0.45 9.6 4.2 2.1 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding YPEB PF14620.1 gi|156937629|ref|YP_001435425.1| - 0.075 12.0 1.1 0.12 11.3 0.7 1.6 1 1 0 1 1 1 0 YpeB sporulation Seryl_tRNA_N PF02403.17 gi|156937629|ref|YP_001435425.1| - 0.082 12.9 2.1 0.25 11.3 1.5 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain bZIP_1 PF00170.16 gi|156937629|ref|YP_001435425.1| - 0.088 12.7 7.2 3.3 7.7 1.2 2.6 2 0 0 2 2 2 0 bZIP transcription factor DUF848 PF05852.6 gi|156937629|ref|YP_001435425.1| - 0.089 12.6 3.9 0.43 10.4 2.0 2.3 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Cytochrom_B562 PF07361.6 gi|156937629|ref|YP_001435425.1| - 0.095 13.1 3.2 4.6 7.7 0.7 2.9 2 1 0 2 2 2 0 Cytochrome b562 IMD PF08397.6 gi|156937629|ref|YP_001435425.1| - 0.24 10.7 2.6 0.26 10.5 1.0 1.6 2 0 0 2 2 2 0 IRSp53/MIM homology domain Cep57_MT_bd PF06657.8 gi|156937629|ref|YP_001435425.1| - 0.26 11.2 4.6 0.68 9.9 3.2 1.8 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 Lge1 PF11488.3 gi|156937629|ref|YP_001435425.1| - 0.32 11.1 4.6 1.9 8.7 0.5 2.3 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 IncA PF04156.9 gi|156937629|ref|YP_001435425.1| - 0.35 10.4 7.0 0.25 10.9 2.9 2.0 1 1 1 2 2 2 0 IncA protein DUF972 PF06156.8 gi|156937629|ref|YP_001435425.1| - 0.48 10.7 4.6 1.5 9.2 0.7 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF972) TPR_10 PF13374.1 gi|156937629|ref|YP_001435425.1| - 1 9.3 4.2 0.39 10.7 0.7 1.9 2 0 0 2 2 1 0 Tetratricopeptide repeat Snapin_Pallidin PF14712.1 gi|156937629|ref|YP_001435425.1| - 1.2 9.4 5.1 4.4 7.6 0.9 2.6 2 1 0 2 2 2 0 Snapin/Pallidin DUF2204 PF09970.4 gi|156937630|ref|YP_001435426.1| - 2.6e-67 225.8 0.6 2.9e-67 225.6 0.4 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.1 gi|156937630|ref|YP_001435426.1| - 0.00026 20.4 0.0 0.00043 19.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Ribosomal_L40e PF01020.12 gi|156937631|ref|YP_001435427.1| - 2.4e-06 27.0 4.0 2.9e-06 26.7 2.8 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|156937631|ref|YP_001435427.1| - 0.012 15.3 1.0 0.015 15.1 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|156937631|ref|YP_001435427.1| - 0.028 13.9 1.2 0.054 12.9 0.8 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|156937631|ref|YP_001435427.1| - 0.042 12.9 4.0 0.058 12.5 2.8 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF2296 PF10058.4 gi|156937631|ref|YP_001435427.1| - 0.06 13.0 1.5 0.33 10.7 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) TF_Zn_Ribbon PF08271.7 gi|156937631|ref|YP_001435427.1| - 0.065 12.5 1.5 7 6.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|156937631|ref|YP_001435427.1| - 0.076 12.2 1.6 0.11 11.6 1.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.11 gi|156937631|ref|YP_001435427.1| - 0.14 11.8 4.6 0.43 10.2 0.3 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-DHHC PF01529.15 gi|156937631|ref|YP_001435427.1| - 0.19 11.0 0.7 0.2 11.0 0.5 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase CpXC PF14353.1 gi|156937631|ref|YP_001435427.1| - 0.23 11.4 1.0 0.39 10.6 0.0 1.7 1 1 1 2 2 2 0 CpXC protein DNA_RNApol_7kD PF03604.8 gi|156937631|ref|YP_001435427.1| - 0.24 10.8 3.3 1.2 8.6 2.3 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-nanos PF05741.8 gi|156937631|ref|YP_001435427.1| - 0.26 11.3 3.9 0.53 10.2 0.2 2.1 1 1 1 2 2 2 0 Nanos RNA binding domain zf-IS66 PF13005.2 gi|156937631|ref|YP_001435427.1| - 0.32 11.0 0.3 0.32 11.0 0.2 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Methyltransf_13 PF08421.6 gi|156937631|ref|YP_001435427.1| - 0.36 10.3 1.8 14 5.2 0.0 2.1 2 0 0 2 2 2 0 Putative zinc binding domain RNA_POL_M_15KD PF02150.11 gi|156937631|ref|YP_001435427.1| - 0.67 9.6 5.1 1.3 8.7 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.13 gi|156937631|ref|YP_001435427.1| - 0.82 9.3 4.1 13 5.5 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|156937631|ref|YP_001435427.1| - 1.1 9.1 5.6 9.8 6.0 3.9 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|156937631|ref|YP_001435427.1| - 1.1 9.2 4.7 11 6.1 3.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L44 PF00935.14 gi|156937631|ref|YP_001435427.1| - 7.7 6.6 7.6 44 4.1 5.2 1.9 1 1 0 1 1 1 0 Ribosomal protein L44 HTH_AsnC-type PF13404.1 gi|156937632|ref|YP_001435428.1| - 6.9e-12 44.7 0.0 3.8e-08 32.7 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|156937632|ref|YP_001435428.1| - 7.3e-06 25.1 0.0 0.011 15.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_24 PF13412.1 gi|156937632|ref|YP_001435428.1| - 7.4e-06 25.2 1.6 0.00011 21.5 0.2 3.0 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.11 gi|156937632|ref|YP_001435428.1| - 0.00055 19.7 0.8 0.54 10.1 0.0 2.7 2 0 0 2 2 2 2 Sigma-70 region 3 IF2_N PF04760.10 gi|156937632|ref|YP_001435428.1| - 0.0059 16.2 0.5 0.68 9.6 0.0 2.8 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_Tnp_ISL3 PF13542.1 gi|156937632|ref|YP_001435428.1| - 0.012 14.7 0.0 7.2 5.8 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 DUF2316 PF10078.4 gi|156937632|ref|YP_001435428.1| - 0.018 15.0 0.0 0.2 11.6 0.0 2.8 3 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2316) DDRGK PF09756.4 gi|156937632|ref|YP_001435428.1| - 0.021 14.2 0.1 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 DDRGK domain YqeY PF09424.5 gi|156937632|ref|YP_001435428.1| - 0.044 13.6 0.3 0.11 12.3 0.2 1.7 1 0 0 1 1 1 0 Yqey-like protein DUF2805 PF10985.3 gi|156937632|ref|YP_001435428.1| - 0.064 13.2 0.1 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) AsnC_trans_reg PF01037.16 gi|156937632|ref|YP_001435428.1| - 0.092 12.4 0.0 0.26 11.0 0.0 1.8 1 0 0 1 1 1 0 AsnC family TrmB PF01978.14 gi|156937632|ref|YP_001435428.1| - 0.098 12.3 3.7 0.46 10.2 0.0 3.3 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB DUF2795 PF11387.3 gi|156937633|ref|YP_001435429.1| - 3e-20 71.8 0.0 1.1e-10 41.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2795) Med26 PF08711.6 gi|156937633|ref|YP_001435429.1| - 0.00062 19.2 0.3 1.4 8.4 0.0 2.5 2 0 0 2 2 2 2 TFIIS helical bundle-like domain ABC_ATPase PF09818.4 gi|156937633|ref|YP_001435429.1| - 0.0058 15.2 0.0 1.3 7.5 0.0 2.0 1 1 1 2 2 2 2 Predicted ATPase of the ABC class Phage_portal_2 PF05136.8 gi|156937633|ref|YP_001435429.1| - 0.019 13.4 0.1 4.1 5.8 0.0 2.1 1 1 0 2 2 2 0 Phage portal protein, lambda family Lip_prot_lig_C PF10437.4 gi|156937633|ref|YP_001435429.1| - 0.064 12.9 0.0 9.9 5.9 0.0 2.5 2 1 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Terminase_2 PF03592.11 gi|156937633|ref|YP_001435429.1| - 0.097 12.9 0.1 0.19 12.0 0.1 1.5 1 1 0 1 1 1 0 Terminase small subunit DUF2939 PF11159.3 gi|156937633|ref|YP_001435429.1| - 0.12 12.5 0.0 9.1 6.5 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2939) ProRS-C_1 PF09180.6 gi|156937633|ref|YP_001435429.1| - 0.15 12.0 0.1 5.4 7.0 0.0 2.5 1 1 1 2 2 2 0 Prolyl-tRNA synthetase, C-terminal DUF650 PF04894.7 gi|156937634|ref|YP_001435430.1| - 1.7e-63 214.6 0.0 2e-63 214.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|156937634|ref|YP_001435430.1| - 1.1e-15 57.1 0.0 2.2e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) SAICAR_synt PF01259.13 gi|156937636|ref|YP_001435432.1| - 3.7e-51 173.6 0.5 4.2e-51 173.4 0.4 1.1 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.9 gi|156937637|ref|YP_001435433.1| - 1.4e-15 56.9 0.1 1.7e-15 56.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase Ribosomal_S6 PF01250.12 gi|156937637|ref|YP_001435433.1| - 0.036 13.9 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S6 GATase_5 PF13507.1 gi|156937638|ref|YP_001435434.1| - 1.6e-34 118.9 0.1 7.4e-33 113.5 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|156937638|ref|YP_001435434.1| - 3.5e-08 33.1 0.0 5.8e-08 32.4 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|156937638|ref|YP_001435434.1| - 3.5e-08 33.1 0.0 5.4e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|156937638|ref|YP_001435434.1| - 2.1e-07 30.5 0.0 3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|156937638|ref|YP_001435434.1| - 0.0021 17.5 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 DUF4066 PF13278.1 gi|156937638|ref|YP_001435434.1| - 0.022 14.0 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase CW_binding_2 PF04122.7 gi|156937638|ref|YP_001435434.1| - 0.12 12.5 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative cell wall binding repeat 2 HTH_23 PF13384.1 gi|156937639|ref|YP_001435435.1| - 4.3e-07 29.3 0.0 9.9e-07 28.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|156937639|ref|YP_001435435.1| - 7.9e-07 28.5 0.0 7.9e-07 28.5 0.0 2.7 3 1 0 3 3 2 1 Helix-turn-helix domain Cep57_MT_bd PF06657.8 gi|156937639|ref|YP_001435435.1| - 1.2e-05 25.1 8.6 2.2e-05 24.3 6.0 1.4 1 0 0 1 1 1 1 Centrosome microtubule-binding domain of Cep57 HTH_40 PF14493.1 gi|156937639|ref|YP_001435435.1| - 1.6e-05 25.0 5.3 0.00038 20.6 3.7 2.6 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|156937639|ref|YP_001435435.1| - 2.9e-05 23.4 1.7 0.00011 21.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 bZIP_2 PF07716.10 gi|156937639|ref|YP_001435435.1| - 0.00011 21.9 4.5 0.00011 21.9 3.1 2.5 1 1 2 3 3 3 1 Basic region leucine zipper HTH_28 PF13518.1 gi|156937639|ref|YP_001435435.1| - 0.00016 21.5 0.0 0.00036 20.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TBPIP PF07106.8 gi|156937639|ref|YP_001435435.1| - 0.00023 20.7 8.3 0.00042 19.8 5.7 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GerE PF00196.14 gi|156937639|ref|YP_001435435.1| - 0.00025 20.3 0.0 0.00058 19.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|156937639|ref|YP_001435435.1| - 0.0003 20.3 0.2 0.002 17.7 0.0 2.5 2 0 0 2 2 1 1 HTH domain bZIP_1 PF00170.16 gi|156937639|ref|YP_001435435.1| - 0.00037 20.4 9.9 0.00037 20.4 6.8 2.5 1 1 1 2 2 2 1 bZIP transcription factor Terminase_5 PF06056.7 gi|156937639|ref|YP_001435435.1| - 0.00039 19.9 0.0 0.00086 18.8 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) Sigma70_r4 PF04545.11 gi|156937639|ref|YP_001435435.1| - 0.00046 19.4 3.7 0.0022 17.2 0.0 2.9 3 0 0 3 3 2 1 Sigma-70, region 4 Atg14 PF10186.4 gi|156937639|ref|YP_001435435.1| - 0.00053 19.0 6.1 0.00086 18.3 4.2 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 TSC22 PF01166.13 gi|156937639|ref|YP_001435435.1| - 0.00079 19.3 18.4 0.0041 17.0 2.5 2.6 1 1 1 2 2 2 1 TSC-22/dip/bun family AAA_23 PF13476.1 gi|156937639|ref|YP_001435435.1| - 0.00083 19.7 4.6 0.00097 19.5 3.2 1.2 1 0 0 1 1 1 1 AAA domain HTH_29 PF13551.1 gi|156937639|ref|YP_001435435.1| - 0.00093 19.3 1.1 0.0014 18.8 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|156937639|ref|YP_001435435.1| - 0.00096 19.0 0.1 0.00096 19.0 0.1 2.3 2 1 0 2 2 2 1 Transposase IncA PF04156.9 gi|156937639|ref|YP_001435435.1| - 0.0014 18.2 13.6 0.003 17.1 9.4 1.4 1 0 0 1 1 1 1 IncA protein Tropomyosin_1 PF12718.2 gi|156937639|ref|YP_001435435.1| - 0.0015 18.3 13.8 0.0025 17.6 9.0 1.6 2 0 0 2 2 1 1 Tropomyosin like ATG16 PF08614.6 gi|156937639|ref|YP_001435435.1| - 0.0019 18.0 6.8 0.0031 17.3 4.7 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF2730 PF10805.3 gi|156937639|ref|YP_001435435.1| - 0.002 17.8 4.7 0.0044 16.7 3.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) HTH_17 PF12728.2 gi|156937639|ref|YP_001435435.1| - 0.0023 18.1 0.1 0.029 14.6 0.1 2.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|156937639|ref|YP_001435435.1| - 0.0024 17.4 0.0 0.0078 15.8 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|156937639|ref|YP_001435435.1| - 0.0025 17.6 0.1 0.011 15.5 0.0 2.2 2 0 0 2 2 1 1 Helix-turn-helix domain Phage_GP20 PF06810.6 gi|156937639|ref|YP_001435435.1| - 0.0047 16.3 5.2 0.0077 15.6 3.6 1.3 1 0 0 1 1 1 1 Phage minor structural protein GP20 HTH_7 PF02796.10 gi|156937639|ref|YP_001435435.1| - 0.0053 16.5 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase PilJ PF13675.1 gi|156937639|ref|YP_001435435.1| - 0.0076 16.5 0.4 0.017 15.3 0.1 1.6 2 0 0 2 2 1 1 Type IV pili methyl-accepting chemotaxis transducer N-term FTA4 PF13093.1 gi|156937639|ref|YP_001435435.1| - 0.0096 15.3 2.7 0.013 14.9 1.9 1.2 1 0 0 1 1 1 1 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Lip_prot_lig_C PF10437.4 gi|156937639|ref|YP_001435435.1| - 0.01 15.4 0.6 4.9 6.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus APG6 PF04111.7 gi|156937639|ref|YP_001435435.1| - 0.011 14.8 7.8 0.014 14.5 5.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA_13 PF13166.1 gi|156937639|ref|YP_001435435.1| - 0.011 14.1 2.1 0.014 13.8 1.5 1.2 1 0 0 1 1 1 0 AAA domain Spc7 PF08317.6 gi|156937639|ref|YP_001435435.1| - 0.012 14.3 7.2 0.017 13.7 5.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein HAP1_N PF04849.8 gi|156937639|ref|YP_001435435.1| - 0.022 13.7 11.6 0.033 13.1 8.1 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Phasin PF05597.6 gi|156937639|ref|YP_001435435.1| - 0.029 14.1 6.9 0.26 11.0 1.1 2.5 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) NPV_P10 PF05531.7 gi|156937639|ref|YP_001435435.1| - 0.033 14.4 0.6 0.076 13.2 0.4 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein NYD-SP28 PF14772.1 gi|156937639|ref|YP_001435435.1| - 0.033 14.2 9.8 0.077 13.0 6.8 1.5 1 0 0 1 1 1 0 Sperm tail Fmp27_WPPW PF10359.4 gi|156937639|ref|YP_001435435.1| - 0.034 12.5 6.3 0.044 12.2 4.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF342 PF03961.8 gi|156937639|ref|YP_001435435.1| - 0.034 12.5 7.4 0.044 12.1 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF972 PF06156.8 gi|156937639|ref|YP_001435435.1| - 0.04 14.2 6.6 0.099 12.9 4.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) TMF_TATA_bd PF12325.3 gi|156937639|ref|YP_001435435.1| - 0.041 13.6 12.1 0.1 12.3 8.4 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Mnd1 PF03962.10 gi|156937639|ref|YP_001435435.1| - 0.043 13.4 5.4 0.077 12.6 3.8 1.4 1 0 0 1 1 1 0 Mnd1 family Herpes_U30 PF04523.8 gi|156937639|ref|YP_001435435.1| - 0.05 11.0 0.1 0.054 10.9 0.1 1.0 1 0 0 1 1 1 0 Herpes virus tegument protein U30 BLOC1_2 PF10046.4 gi|156937639|ref|YP_001435435.1| - 0.057 13.5 8.7 0.11 12.6 6.0 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LemA PF04011.7 gi|156937639|ref|YP_001435435.1| - 0.057 12.5 1.2 0.068 12.2 0.8 1.3 1 0 0 1 1 1 0 LemA family HTH_31 PF13560.1 gi|156937639|ref|YP_001435435.1| - 0.058 13.6 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain GrpE PF01025.14 gi|156937639|ref|YP_001435435.1| - 0.063 12.8 6.4 0.13 11.7 4.5 1.5 1 0 0 1 1 1 0 GrpE Nnf1 PF03980.9 gi|156937639|ref|YP_001435435.1| - 0.063 13.2 1.5 0.063 13.2 1.0 2.5 1 1 1 2 2 2 0 Nnf1 Ead_Ea22 PF13935.1 gi|156937639|ref|YP_001435435.1| - 0.067 13.5 7.1 0.14 12.4 4.9 1.4 1 0 0 1 1 1 0 Ead/Ea22-like protein V_ATPase_I PF01496.14 gi|156937639|ref|YP_001435435.1| - 0.068 11.0 5.1 0.091 10.6 3.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family tRNA-synt_His PF13393.1 gi|156937639|ref|YP_001435435.1| - 0.074 12.0 0.8 0.12 11.3 0.6 1.4 1 0 0 1 1 1 0 Histidyl-tRNA synthetase GAS PF13851.1 gi|156937639|ref|YP_001435435.1| - 0.078 12.1 11.4 0.16 11.1 7.9 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3489 PF11994.3 gi|156937639|ref|YP_001435435.1| - 0.08 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_24 PF13412.1 gi|156937639|ref|YP_001435435.1| - 0.099 12.0 0.0 0.099 12.0 0.0 3.1 3 1 1 4 4 3 0 Winged helix-turn-helix DNA-binding Bap31 PF05529.7 gi|156937639|ref|YP_001435435.1| - 0.11 11.9 3.7 0.16 11.3 2.6 1.4 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like HTH_19 PF12844.2 gi|156937639|ref|YP_001435435.1| - 0.11 12.5 0.0 0.11 12.5 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain Prefoldin PF02996.12 gi|156937639|ref|YP_001435435.1| - 0.13 11.9 12.7 0.37 10.4 2.0 2.4 1 1 1 2 2 2 0 Prefoldin subunit ACCA PF03255.9 gi|156937639|ref|YP_001435435.1| - 0.14 11.6 5.6 0.3 10.6 3.9 1.5 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FemAB PF02388.11 gi|156937639|ref|YP_001435435.1| - 0.14 10.7 5.5 0.2 10.2 3.8 1.1 1 0 0 1 1 1 0 FemAB family Reo_sigmaC PF04582.7 gi|156937639|ref|YP_001435435.1| - 0.16 11.1 0.1 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein TMF_DNA_bd PF12329.3 gi|156937639|ref|YP_001435435.1| - 0.16 11.8 22.4 0.53 10.1 15.5 1.8 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ING PF12998.2 gi|156937639|ref|YP_001435435.1| - 0.16 12.2 4.6 0.29 11.4 3.2 1.4 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Nif11 PF07862.6 gi|156937639|ref|YP_001435435.1| - 0.16 11.9 1.7 0.37 10.7 0.8 1.9 1 1 0 1 1 1 0 Nitrogen fixation protein of unknown function Shugoshin_N PF07558.6 gi|156937639|ref|YP_001435435.1| - 0.17 11.6 11.2 0.1 12.3 2.7 3.0 2 1 0 2 2 2 0 Shugoshin N-terminal coiled-coil region KorB PF08535.5 gi|156937639|ref|YP_001435435.1| - 0.17 12.0 3.8 0.25 11.5 0.0 2.3 2 0 0 2 2 2 0 KorB domain Ax_dynein_light PF10211.4 gi|156937639|ref|YP_001435435.1| - 0.18 11.5 12.2 0.35 10.6 7.4 2.1 2 1 0 2 2 1 0 Axonemal dynein light chain FlaC_arch PF05377.6 gi|156937639|ref|YP_001435435.1| - 0.18 11.6 12.4 1e+02 2.8 0.0 3.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) HTH_DeoR PF08220.7 gi|156937639|ref|YP_001435435.1| - 0.2 11.2 1.2 0.34 10.4 0.0 2.0 3 0 0 3 3 1 0 DeoR-like helix-turn-helix domain DUF1664 PF07889.7 gi|156937639|ref|YP_001435435.1| - 0.21 11.3 2.3 0.42 10.4 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF812 PF05667.6 gi|156937639|ref|YP_001435435.1| - 0.32 9.4 8.4 0.53 8.7 5.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) LOH1CR12 PF10158.4 gi|156937639|ref|YP_001435435.1| - 0.34 10.6 2.7 0.55 10.0 1.9 1.3 1 0 0 1 1 1 0 Tumour suppressor protein Microtub_assoc PF07989.6 gi|156937639|ref|YP_001435435.1| - 0.37 10.6 13.8 1.4e+02 2.3 9.6 2.4 1 1 0 1 1 1 0 Microtubule associated DUF603 PF04645.7 gi|156937639|ref|YP_001435435.1| - 0.38 10.6 6.2 0.73 9.7 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF603 DUF2203 PF09969.4 gi|156937639|ref|YP_001435435.1| - 0.55 10.4 3.6 0.54 10.4 1.7 1.5 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) Nup54 PF13874.1 gi|156937639|ref|YP_001435435.1| - 0.59 9.8 10.1 1.5 8.4 6.9 1.7 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Caldesmon PF02029.10 gi|156937639|ref|YP_001435435.1| - 0.63 8.3 11.4 0.82 8.0 7.9 1.1 1 0 0 1 1 1 0 Caldesmon Med9 PF07544.8 gi|156937639|ref|YP_001435435.1| - 0.63 9.8 18.0 1.9 8.2 4.1 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 EAP30 PF04157.11 gi|156937639|ref|YP_001435435.1| - 0.66 9.0 7.5 4.8 6.2 0.0 2.5 2 1 0 2 2 2 0 EAP30/Vps36 family HlyD PF00529.15 gi|156937639|ref|YP_001435435.1| - 0.74 9.0 4.9 1.2 8.3 1.8 1.9 2 0 0 2 2 2 0 HlyD family secretion protein Cep57_CLD_2 PF14197.1 gi|156937639|ref|YP_001435435.1| - 0.94 9.4 18.3 1.7 8.6 11.7 2.2 2 1 0 2 2 1 0 Centrosome localisation domain of PPC89 DivIC PF04977.10 gi|156937639|ref|YP_001435435.1| - 0.98 8.9 20.8 0.038 13.4 5.4 2.9 2 1 1 3 3 2 0 Septum formation initiator HalX PF08663.5 gi|156937639|ref|YP_001435435.1| - 1.1 9.3 8.9 2.1 8.3 3.4 2.3 1 1 1 2 2 2 0 HalX domain CASP_C PF08172.7 gi|156937639|ref|YP_001435435.1| - 1.1 8.2 11.0 1.5 7.8 2.1 2.2 2 0 0 2 2 2 0 CASP C terminal Borrelia_REV PF03978.8 gi|156937639|ref|YP_001435435.1| - 1.1 8.9 6.8 2.3 7.9 4.7 1.5 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein DUF3375 PF11855.3 gi|156937639|ref|YP_001435435.1| - 1.2 7.8 7.9 2.3 6.8 5.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) Seryl_tRNA_N PF02403.17 gi|156937639|ref|YP_001435435.1| - 1.2 9.2 14.5 1.9 8.5 9.7 1.6 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain COG2 PF06148.6 gi|156937639|ref|YP_001435435.1| - 1.4 8.8 6.4 3.3 7.5 3.9 1.9 2 0 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|156937639|ref|YP_001435435.1| - 1.4 8.9 5.9 6.5 6.8 0.4 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.1 gi|156937639|ref|YP_001435435.1| - 1.6 9.0 8.6 22 5.4 6.0 2.3 1 1 0 1 1 1 0 Snapin/Pallidin DASH_Dad3 PF08656.5 gi|156937639|ref|YP_001435435.1| - 1.8 8.3 10.3 0.96 9.1 2.2 3.0 3 1 1 4 4 2 0 DASH complex subunit Dad3 MtrG PF04210.8 gi|156937639|ref|YP_001435435.1| - 1.8 8.2 5.9 8.3 6.1 0.4 2.4 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Syntaxin PF00804.20 gi|156937639|ref|YP_001435435.1| - 1.8 8.7 8.8 3.7 7.7 6.1 1.4 1 0 0 1 1 1 0 Syntaxin DUF848 PF05852.6 gi|156937639|ref|YP_001435435.1| - 1.9 8.3 8.5 3.4 7.4 5.9 1.4 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DivIVA PF05103.8 gi|156937639|ref|YP_001435435.1| - 2 8.5 13.5 4.5 7.3 3.0 2.4 1 1 1 2 2 2 0 DivIVA protein DUF4140 PF13600.1 gi|156937639|ref|YP_001435435.1| - 2 8.9 13.5 2.9 8.3 2.5 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Med4 PF10018.4 gi|156937639|ref|YP_001435435.1| - 2 7.7 12.6 4.5 6.6 1.0 2.3 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Cauli_AT PF03233.8 gi|156937639|ref|YP_001435435.1| - 2.2 7.9 6.7 3.9 7.1 4.6 1.3 1 0 0 1 1 1 0 Aphid transmission protein DUF4200 PF13863.1 gi|156937639|ref|YP_001435435.1| - 2.3 8.1 17.7 1.5 8.7 3.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) FlxA PF14282.1 gi|156937639|ref|YP_001435435.1| - 2.5 8.0 6.5 5.5 6.9 4.5 1.6 1 1 0 1 1 1 0 FlxA-like protein AKNA PF12443.3 gi|156937639|ref|YP_001435435.1| - 2.6 8.1 9.8 7.8 6.5 0.9 2.3 1 1 1 2 2 2 0 AT-hook-containing transcription factor DUF904 PF06005.7 gi|156937639|ref|YP_001435435.1| - 2.8 8.3 21.6 0.26 11.5 11.6 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF904) Erp_C PF06780.6 gi|156937639|ref|YP_001435435.1| - 2.9 7.7 10.7 5.6 6.8 6.9 1.7 1 1 0 1 1 1 0 Erp protein C-terminus KfrA_N PF11740.3 gi|156937639|ref|YP_001435435.1| - 3 8.3 15.4 5.2 7.5 0.1 3.1 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term Enkurin PF13864.1 gi|156937639|ref|YP_001435435.1| - 3.3 7.9 12.5 8.6 6.6 8.7 1.7 1 0 0 1 1 1 0 Calmodulin-binding NYD-SP28_assoc PF14775.1 gi|156937639|ref|YP_001435435.1| - 7.1 6.4 9.4 0.5 10.0 1.7 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain Prefoldin_2 PF01920.15 gi|156937639|ref|YP_001435435.1| - 7.5 6.3 23.5 1.3 8.8 3.8 2.7 2 1 1 3 3 2 0 Prefoldin subunit Spc24 PF08286.6 gi|156937639|ref|YP_001435435.1| - 8 6.1 11.7 68 3.1 8.1 2.3 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Pox_A_type_inc PF04508.7 gi|156937639|ref|YP_001435435.1| - 8.7 6.4 24.4 0.34 10.7 4.9 4.4 4 0 0 4 4 4 0 Viral A-type inclusion protein repeat MerR-DNA-bind PF09278.6 gi|156937639|ref|YP_001435435.1| - 9.3 6.7 14.3 6.5 7.2 1.9 2.6 1 1 1 2 2 2 0 MerR, DNA binding TOBE PF03459.12 gi|156937640|ref|YP_001435436.1| - 4.9 7.3 10.9 5 7.3 0.1 4.5 5 0 0 5 5 5 0 TOBE domain Pkinase PF00069.20 gi|156937641|ref|YP_001435437.1| - 0.00014 21.1 0.0 0.00063 18.9 0.0 1.8 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|156937641|ref|YP_001435437.1| - 0.0016 17.5 0.0 0.0079 15.3 0.0 1.8 1 1 0 1 1 1 1 Protein tyrosine kinase RIO1 PF01163.17 gi|156937641|ref|YP_001435437.1| - 0.0037 16.6 0.0 0.0091 15.3 0.0 1.6 1 1 0 1 1 1 1 RIO1 family ABC1 PF03109.11 gi|156937641|ref|YP_001435437.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 ABC1 family tRNA_NucTransf2 PF09249.6 gi|156937642|ref|YP_001435438.1| - 1.5e-41 140.8 0.0 2.4e-41 140.1 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|156937642|ref|YP_001435438.1| - 1.6e-08 34.7 0.0 4.8e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|156937643|ref|YP_001435439.1| - 3.6e-35 119.7 0.4 2.4e-18 65.9 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|156937643|ref|YP_001435439.1| - 2e-16 60.0 0.0 2.6e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|156937643|ref|YP_001435439.1| - 3.6e-14 52.9 0.0 4.5e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|156937643|ref|YP_001435439.1| - 1.7e-05 23.9 0.0 5.8e-05 22.2 0.0 1.7 1 1 0 1 1 1 1 Uncharacterised conserved protein CAP_GLY PF01302.20 gi|156937643|ref|YP_001435439.1| - 0.0063 16.1 0.1 0.036 13.7 0.0 2.0 2 0 0 2 2 2 1 CAP-Gly domain Bac_luciferase PF00296.15 gi|156937643|ref|YP_001435439.1| - 0.1 11.6 0.1 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Luciferase-like monooxygenase TFIIS_C PF01096.13 gi|156937645|ref|YP_001435441.1| - 4.8e-22 77.2 9.5 1.2e-20 72.8 1.4 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|156937645|ref|YP_001435441.1| - 2.9e-09 36.5 8.4 1.8e-05 24.4 1.2 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|156937645|ref|YP_001435441.1| - 3.8e-08 32.8 0.1 3.8e-08 32.8 0.1 2.8 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|156937645|ref|YP_001435441.1| - 2.6e-06 27.2 3.9 0.0021 17.9 0.1 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.1 gi|156937645|ref|YP_001435441.1| - 2.7e-06 26.6 11.1 0.34 10.4 0.2 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|156937645|ref|YP_001435441.1| - 7e-06 25.5 10.9 0.034 13.7 0.3 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|156937645|ref|YP_001435441.1| - 1.3e-05 24.7 11.4 0.049 13.3 0.4 4.2 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.2 gi|156937645|ref|YP_001435441.1| - 1.4e-05 24.7 6.1 0.012 15.4 0.2 2.8 2 1 0 2 2 2 2 Double zinc ribbon UPF0547 PF10571.4 gi|156937645|ref|YP_001435441.1| - 4.3e-05 23.1 13.2 0.5 10.1 0.2 4.3 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|156937645|ref|YP_001435441.1| - 5.5e-05 22.2 13.3 0.22 10.7 3.2 4.0 3 1 1 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156937645|ref|YP_001435441.1| - 6e-05 22.6 8.2 0.031 13.9 1.2 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|156937645|ref|YP_001435441.1| - 0.00015 21.6 9.9 4 7.4 0.1 4.1 4 0 0 4 4 4 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|156937645|ref|YP_001435441.1| - 0.00061 19.3 10.2 0.05 13.2 0.0 4.1 4 0 0 4 4 4 1 Ogr/Delta-like zinc finger IBR PF01485.16 gi|156937645|ref|YP_001435441.1| - 0.00063 19.5 4.5 0.17 11.8 0.3 3.1 3 0 0 3 3 3 1 IBR domain FdhE PF04216.7 gi|156937645|ref|YP_001435441.1| - 0.00078 19.2 2.9 0.47 10.1 0.2 2.1 2 0 0 2 2 2 2 Protein involved in formate dehydrogenase formation TF_Zn_Ribbon PF08271.7 gi|156937645|ref|YP_001435441.1| - 0.00083 18.6 11.0 0.017 14.4 0.6 3.8 2 2 1 3 3 3 2 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|156937645|ref|YP_001435441.1| - 0.00089 19.2 10.1 1.1 9.3 0.1 4.2 3 1 1 4 4 4 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.1 gi|156937645|ref|YP_001435441.1| - 0.00099 18.2 0.7 0.00099 18.2 0.5 3.0 2 1 0 2 2 2 1 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|156937645|ref|YP_001435441.1| - 0.0013 18.2 11.3 0.057 12.9 0.1 4.2 4 0 0 4 4 4 1 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.1 gi|156937645|ref|YP_001435441.1| - 0.004 17.4 9.1 0.38 11.1 0.4 2.6 2 2 0 2 2 2 2 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|156937645|ref|YP_001435441.1| - 0.0073 15.9 1.6 0.4 10.4 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain RRN7 PF11781.3 gi|156937645|ref|YP_001435441.1| - 0.0089 15.5 11.6 0.49 9.9 0.3 3.2 3 0 0 3 3 3 2 RNA polymerase I-specific transcription initiation factor Rrn7 Nudix_N_2 PF14803.1 gi|156937645|ref|YP_001435441.1| - 0.032 13.9 13.9 0.28 10.9 1.0 4.0 2 2 2 4 4 4 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|156937645|ref|YP_001435441.1| - 0.041 13.3 8.8 6.5 6.3 0.1 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|156937645|ref|YP_001435441.1| - 0.046 13.9 16.1 0.58 10.4 3.9 3.4 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain HypA PF01155.14 gi|156937645|ref|YP_001435441.1| - 0.056 13.1 7.6 0.092 12.4 0.5 3.1 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|156937645|ref|YP_001435441.1| - 0.064 13.1 10.2 8 6.4 0.0 4.2 4 0 0 4 4 4 0 Rubredoxin Elf1 PF05129.8 gi|156937645|ref|YP_001435441.1| - 0.066 12.9 7.4 4.1 7.1 0.3 3.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Baculo_LEF5_C PF11792.3 gi|156937645|ref|YP_001435441.1| - 0.071 12.5 0.4 0.071 12.5 0.3 3.3 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain DUF2082 PF09855.4 gi|156937645|ref|YP_001435441.1| - 0.073 12.9 7.3 5.9 6.8 0.0 4.0 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Ribosomal_L32p PF01783.18 gi|156937645|ref|YP_001435441.1| - 0.073 13.2 5.6 11 6.2 0.2 3.6 3 2 0 3 3 3 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.8 gi|156937645|ref|YP_001435441.1| - 0.082 12.3 13.9 1.5 8.3 0.1 4.0 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.17 gi|156937645|ref|YP_001435441.1| - 0.094 12.4 0.6 0.094 12.4 0.4 2.5 3 0 0 3 3 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-DNA_Pol PF08996.5 gi|156937645|ref|YP_001435441.1| - 0.15 11.3 2.4 1.1 8.5 0.0 2.2 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger zf-C4_Topoisom PF01396.14 gi|156937645|ref|YP_001435441.1| - 0.16 11.5 14.6 0.069 12.6 1.5 3.2 2 2 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger PhnA_Zn_Ribbon PF08274.7 gi|156937645|ref|YP_001435441.1| - 0.19 11.5 9.9 2.6 7.9 1.5 3.5 2 2 0 2 2 2 0 PhnA Zinc-Ribbon Mu-like_Com PF10122.4 gi|156937645|ref|YP_001435441.1| - 0.22 10.6 8.7 0.9 8.6 0.6 3.6 3 1 0 3 3 3 0 Mu-like prophage protein Com Zn_Tnp_IS91 PF14319.1 gi|156937645|ref|YP_001435441.1| - 0.22 11.0 8.5 2 7.9 0.1 3.5 2 2 1 3 3 3 0 Transposase zinc-binding domain zf-MYND PF01753.13 gi|156937645|ref|YP_001435441.1| - 0.25 11.2 4.6 4.2 7.3 0.2 2.6 2 1 0 2 2 2 0 MYND finger PolC_DP2 PF03833.8 gi|156937645|ref|YP_001435441.1| - 0.28 8.8 3.1 0.19 9.3 0.2 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Terminase_GpA PF05876.7 gi|156937645|ref|YP_001435441.1| - 0.28 9.4 6.7 0.029 12.7 1.2 1.8 2 1 0 2 2 2 0 Phage terminase large subunit (GpA) YhfH PF14149.1 gi|156937645|ref|YP_001435441.1| - 0.31 10.8 10.0 11 5.8 0.2 4.1 3 1 1 4 4 4 0 YhfH-like protein GFA PF04828.9 gi|156937645|ref|YP_001435441.1| - 0.31 11.0 8.7 1.9 8.4 0.2 3.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Gmx_para_CXXCG PF09535.5 gi|156937645|ref|YP_001435441.1| - 0.51 9.2 2.3 0.55 9.1 0.0 2.1 1 1 1 3 3 3 0 Protein of unknown function (Gmx_para_CXXCG) NOB1_Zn_bind PF08772.6 gi|156937645|ref|YP_001435441.1| - 0.56 10.0 13.6 2.6 7.9 0.4 3.9 2 1 2 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_L37ae PF01780.14 gi|156937645|ref|YP_001435441.1| - 0.73 9.7 9.2 0.078 12.8 0.9 2.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family Desulfoferrod_N PF06397.7 gi|156937645|ref|YP_001435441.1| - 0.86 9.0 10.8 1.5 8.2 0.1 3.1 3 1 1 4 4 3 0 Desulfoferrodoxin, N-terminal domain zf-RING_3 PF14369.1 gi|156937645|ref|YP_001435441.1| - 1.1 9.3 0.1 1.1 9.3 0.1 3.7 3 1 0 3 3 3 0 zinc-finger ADK_lid PF05191.9 gi|156937645|ref|YP_001435441.1| - 1.1 8.9 8.5 15 5.3 0.1 3.7 4 0 0 4 4 3 0 Adenylate kinase, active site lid zf-C2H2_4 PF13894.1 gi|156937645|ref|YP_001435441.1| - 1.1 9.7 7.0 48 4.6 0.0 3.7 4 0 0 4 4 4 0 C2H2-type zinc finger Ribosomal_S27e PF01667.12 gi|156937645|ref|YP_001435441.1| - 1.2 8.6 10.3 8.3 6.0 1.0 3.6 2 2 0 2 2 2 0 Ribosomal protein S27 Rpr2 PF04032.11 gi|156937645|ref|YP_001435441.1| - 1.5 8.7 10.2 2.8 7.8 0.8 3.3 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-IS66 PF13005.2 gi|156937645|ref|YP_001435441.1| - 1.7 8.7 13.3 10 6.2 0.1 4.4 4 1 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.1 gi|156937645|ref|YP_001435441.1| - 1.8 8.4 7.4 2 8.3 0.5 2.8 2 2 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CSL PF05207.8 gi|156937645|ref|YP_001435441.1| - 4.2 6.9 10.4 1.9 8.0 0.2 3.2 1 1 2 3 3 3 0 CSL zinc finger FYDLN_acid PF09538.5 gi|156937645|ref|YP_001435441.1| - 4.4 7.9 5.7 31 5.2 0.1 3.2 1 1 2 3 3 2 0 Protein of unknown function (FYDLN_acid) zf-GRF PF06839.7 gi|156937645|ref|YP_001435441.1| - 4.9 7.1 8.3 0.39 10.6 0.4 2.6 3 1 0 3 3 2 0 GRF zinc finger RecR PF02132.10 gi|156937645|ref|YP_001435441.1| - 5.9 6.4 7.3 9 5.8 0.0 3.7 4 0 0 4 4 4 0 RecR protein zf-HIT PF04438.11 gi|156937645|ref|YP_001435441.1| - 6 6.5 12.9 13 5.5 0.3 4.0 4 0 0 4 4 4 0 HIT zinc finger DUF2296 PF10058.4 gi|156937645|ref|YP_001435441.1| - 6.8 6.5 11.0 3.7 7.3 1.8 3.4 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) tRNA-synt_2b PF00587.20 gi|156937646|ref|YP_001435442.1| - 9.9e-36 122.9 0.8 1.7e-35 122.1 0.3 1.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|156937646|ref|YP_001435442.1| - 0.0002 21.2 2.5 0.00047 20.0 1.7 1.7 1 0 0 1 1 1 1 Anticodon binding domain Peptidase_M20 PF01546.23 gi|156937646|ref|YP_001435442.1| - 0.14 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 PCNA_N PF00705.13 gi|156937647|ref|YP_001435443.1| - 8.1e-16 57.6 0.0 1.2e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|156937647|ref|YP_001435443.1| - 8.7e-13 48.3 0.0 2.2e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|156937647|ref|YP_001435443.1| - 2.8e-08 32.8 0.1 2.4e-06 26.5 0.1 2.1 1 1 0 1 1 1 1 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|156937647|ref|YP_001435443.1| - 0.00056 19.1 0.0 0.0014 17.8 0.0 1.5 2 0 0 2 2 2 1 Rad9 DUF1374 PF07118.6 gi|156937647|ref|YP_001435443.1| - 0.028 14.5 0.1 0.071 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1374) Hus1 PF04005.7 gi|156937647|ref|YP_001435443.1| - 0.056 12.3 0.0 0.12 11.3 0.0 1.5 2 0 0 2 2 2 0 Hus1-like protein SCP2 PF02036.12 gi|156937647|ref|YP_001435443.1| - 0.075 13.3 0.0 12 6.2 0.0 2.3 2 0 0 2 2 2 0 SCP-2 sterol transfer family DNA_primase_S PF01896.14 gi|156937648|ref|YP_001435444.1| - 1.5e-09 37.8 0.0 3.3e-08 33.4 0.0 2.2 2 0 0 2 2 2 1 Eukaryotic and archaeal DNA primase small subunit CxxCxxCC PF03692.10 gi|156937649|ref|YP_001435445.1| - 0.00046 20.6 3.0 0.00077 19.8 2.1 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain CN_hydrolase PF00795.17 gi|156937650|ref|YP_001435446.1| - 6.3e-12 45.2 0.0 5.2e-11 42.2 0.0 2.0 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase PadR PF03551.9 gi|156937651|ref|YP_001435447.1| - 6.1e-14 51.5 0.0 1.7e-13 50.1 0.0 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Mrr_N PF14338.1 gi|156937651|ref|YP_001435447.1| - 0.00011 22.1 0.4 0.00071 19.6 0.0 2.1 1 1 1 2 2 2 1 Mrr N-terminal domain HTH_27 PF13463.1 gi|156937651|ref|YP_001435447.1| - 0.00064 19.9 0.4 0.0039 17.4 0.1 2.5 2 1 0 2 2 2 1 Winged helix DNA-binding domain HemN_C PF06969.11 gi|156937651|ref|YP_001435447.1| - 0.001 19.0 0.0 0.0023 17.9 0.0 1.7 1 1 0 1 1 1 1 HemN C-terminal domain HTH_45 PF14947.1 gi|156937651|ref|YP_001435447.1| - 0.0014 18.4 0.0 0.0014 18.4 0.0 2.5 4 0 0 4 4 4 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|156937651|ref|YP_001435447.1| - 0.0062 16.1 0.1 19 5.0 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|156937651|ref|YP_001435447.1| - 0.011 15.3 0.0 0.074 12.6 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain RQC PF09382.5 gi|156937651|ref|YP_001435447.1| - 0.015 15.0 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 RQC domain DUF4364 PF14277.1 gi|156937651|ref|YP_001435447.1| - 0.02 14.5 0.6 0.031 13.8 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|156937651|ref|YP_001435447.1| - 0.024 14.3 0.0 0.094 12.4 0.0 2.1 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Topoisom_bac PF01131.15 gi|156937651|ref|YP_001435447.1| - 0.068 11.9 0.1 0.076 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase Aminotran_1_2 PF00155.16 gi|156937652|ref|YP_001435448.1| - 9.8e-42 143.1 0.0 1.1e-41 143.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|156937652|ref|YP_001435448.1| - 1e-13 50.7 0.0 1.6e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.14 gi|156937652|ref|YP_001435448.1| - 1.5e-05 23.9 0.0 2.4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|156937652|ref|YP_001435448.1| - 0.00026 20.1 0.0 0.00052 19.1 0.0 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|156937652|ref|YP_001435448.1| - 0.044 12.9 0.0 0.085 11.9 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase Ribosomal_S13_N PF08069.7 gi|156937653|ref|YP_001435449.1| - 1.9e-24 85.2 0.1 5.2e-24 83.8 0.1 1.7 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|156937653|ref|YP_001435449.1| - 2e-21 75.5 0.0 3e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Nro1 PF12753.2 gi|156937654|ref|YP_001435450.1| - 0.069 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Nuclear pore complex subunit Nro1 Pcc1 PF09341.5 gi|156937655|ref|YP_001435451.1| - 0.019 15.0 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 Ribosomal_S3Ae PF01015.13 gi|156937656|ref|YP_001435452.1| - 5.3e-72 241.2 2.3 6.4e-72 240.9 1.6 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF4258 PF14076.1 gi|156937656|ref|YP_001435452.1| - 0.028 14.4 0.1 0.08 12.9 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4258) TAFII28 PF04719.9 gi|156937656|ref|YP_001435452.1| - 0.057 13.2 3.2 6 6.7 0.0 2.6 3 0 0 3 3 3 0 hTAFII28-like protein conserved region Band_7 PF01145.20 gi|156937656|ref|YP_001435452.1| - 0.11 12.4 1.1 0.46 10.3 0.7 2.1 1 1 0 1 1 1 0 SPFH domain / Band 7 family HhH-GPD PF00730.20 gi|156937657|ref|YP_001435453.1| - 1.6e-20 73.3 0.0 2.2e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|156937657|ref|YP_001435453.1| - 9.9e-06 25.5 7.6 1.6e-05 24.9 5.3 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|156937657|ref|YP_001435453.1| - 2.8e-05 24.2 2.0 0.11 12.7 0.1 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_8 PF14716.1 gi|156937657|ref|YP_001435453.1| - 0.002 18.2 0.5 0.0051 16.9 0.2 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|156937657|ref|YP_001435453.1| - 0.0032 17.0 0.1 0.0099 15.5 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|156937657|ref|YP_001435453.1| - 0.029 14.0 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Phasin PF05597.6 gi|156937657|ref|YP_001435453.1| - 0.085 12.6 1.2 1.6 8.5 0.4 2.7 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF221 PF02714.10 gi|156937658|ref|YP_001435454.1| - 0.0043 15.9 1.1 0.0062 15.4 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF221 PepSY_TM_2 PF13703.1 gi|156937658|ref|YP_001435454.1| - 0.092 12.9 1.5 0.57 10.3 0.2 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix QueC PF06508.8 gi|156937660|ref|YP_001435456.1| - 1.5e-48 164.8 0.0 1.8e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|156937660|ref|YP_001435456.1| - 0.00067 18.6 0.3 0.008 15.0 0.0 2.0 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|156937660|ref|YP_001435456.1| - 0.0017 17.9 0.0 0.005 16.3 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase DUF1341 PF07071.6 gi|156937660|ref|YP_001435456.1| - 0.021 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) Radical_SAM PF04055.16 gi|156937661|ref|YP_001435457.1| - 7.3e-17 62.0 0.0 1.2e-16 61.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|156937661|ref|YP_001435457.1| - 0.0062 16.5 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain IF2_N PF04760.10 gi|156937661|ref|YP_001435457.1| - 0.011 15.3 0.2 0.11 12.2 0.1 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region AP_endonuc_2 PF01261.19 gi|156937661|ref|YP_001435457.1| - 0.03 13.6 0.0 0.073 12.3 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel HD PF01966.17 gi|156937662|ref|YP_001435458.1| - 0.00044 20.2 0.1 0.002 18.1 0.1 2.1 1 1 0 1 1 1 1 HD domain DUF377 PF04041.8 gi|156937663|ref|YP_001435459.1| - 1.9e-43 148.4 0.6 4.7e-43 147.0 0.4 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF377) NAD_binding_5 PF07994.7 gi|156937664|ref|YP_001435460.1| - 9.2e-41 140.2 0.0 1.2e-40 139.9 0.0 1.0 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|156937664|ref|YP_001435460.1| - 1.2e-24 86.3 0.0 2.4e-24 85.2 0.0 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase PhoH PF02562.11 gi|156937665|ref|YP_001435461.1| - 2e-54 183.9 0.1 2.8e-54 183.4 0.1 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_1 PF00013.24 gi|156937665|ref|YP_001435461.1| - 3.1e-07 29.9 0.0 2.1e-05 24.0 0.0 2.7 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|156937665|ref|YP_001435461.1| - 2.1e-06 27.1 0.2 9.2e-05 21.9 0.1 2.7 1 1 1 2 2 2 1 KH domain KH_5 PF13184.1 gi|156937665|ref|YP_001435461.1| - 5.1e-06 26.2 0.2 0.22 11.3 0.0 3.6 4 0 0 4 4 4 2 NusA-like KH domain KH_3 PF13014.1 gi|156937665|ref|YP_001435461.1| - 4.4e-05 23.0 0.0 0.00031 20.3 0.0 2.4 2 0 0 2 2 2 1 KH domain AAA_22 PF13401.1 gi|156937665|ref|YP_001435461.1| - 0.0023 18.0 0.1 0.0073 16.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|156937665|ref|YP_001435461.1| - 0.0028 17.2 0.0 0.012 15.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|156937665|ref|YP_001435461.1| - 0.022 14.6 0.5 0.21 11.5 0.0 2.6 3 0 0 3 3 3 0 AAA domain DEAD PF00270.24 gi|156937665|ref|YP_001435461.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase NTP_transferase PF00483.18 gi|156937666|ref|YP_001435462.1| - 2.2e-25 89.4 0.0 2.9e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|156937666|ref|YP_001435462.1| - 3e-15 56.6 0.1 4.2e-15 56.1 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|156937666|ref|YP_001435462.1| - 1.1e-11 43.6 5.5 0.00039 19.7 0.0 3.7 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|156937666|ref|YP_001435462.1| - 4.4e-05 23.1 0.0 6.3e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transf_4 PF13562.1 gi|156937666|ref|YP_001435462.1| - 0.00062 19.4 0.1 0.11 12.1 0.0 2.8 3 0 0 3 3 3 1 Sugar nucleotidyl transferase Hexapep_2 PF14602.1 gi|156937666|ref|YP_001435462.1| - 0.017 14.6 1.6 0.32 10.6 0.7 2.7 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase Moricin PF06451.6 gi|156937666|ref|YP_001435462.1| - 0.13 11.8 0.6 0.49 9.9 0.0 2.3 3 0 0 3 3 3 0 Moricin DUF4455 PF14643.1 gi|156937666|ref|YP_001435462.1| - 0.24 10.0 0.0 0.34 9.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) DUF4346 PF14251.1 gi|156937667|ref|YP_001435463.1| - 0.00015 21.4 0.0 0.00047 19.8 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4346) VitK2_biosynth PF02621.9 gi|156937668|ref|YP_001435464.1| - 4.2e-79 265.3 0.1 4.7e-79 265.1 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis YhfZ_C PF14503.1 gi|156937668|ref|YP_001435464.1| - 0.00031 20.1 0.0 0.00047 19.5 0.0 1.2 1 0 0 1 1 1 1 YhfZ C-terminal domain Phosphonate-bd PF12974.2 gi|156937668|ref|YP_001435464.1| - 0.0032 16.8 0.3 0.0075 15.6 0.2 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|156937668|ref|YP_001435464.1| - 0.035 13.6 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 NMT1/THI5 like SBP_bac_3 PF00497.15 gi|156937668|ref|YP_001435464.1| - 0.12 11.6 0.1 0.41 9.8 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DUF2201_N PF13203.1 gi|156937669|ref|YP_001435465.1| - 6.1e-21 74.8 0.0 8.1e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.4 gi|156937669|ref|YP_001435465.1| - 1.8e-11 44.1 0.1 3.3e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA PF00092.23 gi|156937669|ref|YP_001435465.1| - 4.2e-07 29.8 0.0 7.4e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|156937669|ref|YP_001435465.1| - 0.0076 15.4 0.0 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF3258 PF11646.3 gi|156937669|ref|YP_001435465.1| - 0.027 14.6 0.3 0.055 13.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF3258 vWA-TerF-like PF10138.4 gi|156937669|ref|YP_001435465.1| - 0.08 12.7 0.0 0.24 11.1 0.0 1.9 1 0 0 1 1 1 0 vWA found in TerF C terminus P3A PF08727.6 gi|156937669|ref|YP_001435465.1| - 0.095 12.0 0.1 3 7.2 0.1 2.6 2 0 0 2 2 2 0 Poliovirus 3A protein like PCMT PF01135.14 gi|156937670|ref|YP_001435466.1| - 2.7e-77 259.0 0.1 3.3e-77 258.7 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|156937670|ref|YP_001435466.1| - 8.1e-15 54.7 0.0 1.1e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937670|ref|YP_001435466.1| - 1.1e-10 42.0 0.0 1.8e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156937670|ref|YP_001435466.1| - 2.6e-08 33.8 0.0 4.7e-08 33.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|156937670|ref|YP_001435466.1| - 8.3e-08 32.0 0.0 1.2e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|156937670|ref|YP_001435466.1| - 1.1e-06 27.9 0.0 1.7e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|156937670|ref|YP_001435466.1| - 6.1e-06 25.5 0.0 8.8e-06 24.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Fibrillarin PF01269.12 gi|156937670|ref|YP_001435466.1| - 1.6e-05 23.9 0.0 2.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_11 PF08241.7 gi|156937670|ref|YP_001435466.1| - 3.4e-05 24.2 0.0 0.00014 22.2 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|156937670|ref|YP_001435466.1| - 4.4e-05 22.6 0.0 0.00011 21.3 0.0 1.6 1 1 0 1 1 1 1 O-methyltransferase Methyltransf_4 PF02390.12 gi|156937670|ref|YP_001435466.1| - 0.00018 20.6 0.0 0.00029 19.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.1 gi|156937670|ref|YP_001435466.1| - 0.00058 19.6 0.0 0.00087 19.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156937670|ref|YP_001435466.1| - 0.00084 18.7 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|156937670|ref|YP_001435466.1| - 0.0013 19.5 0.0 0.0025 18.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|156937670|ref|YP_001435466.1| - 0.0018 18.7 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|156937670|ref|YP_001435466.1| - 0.0039 16.8 0.0 0.0056 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain ACP_syn_III_C PF08541.5 gi|156937670|ref|YP_001435466.1| - 0.0051 16.7 0.0 0.012 15.5 0.0 1.7 2 0 0 2 2 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GidB PF02527.10 gi|156937670|ref|YP_001435466.1| - 0.0062 15.6 0.0 0.0091 15.1 0.0 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.1 gi|156937670|ref|YP_001435466.1| - 0.0065 16.8 0.0 0.0097 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.7 gi|156937670|ref|YP_001435466.1| - 0.0084 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) CMAS PF02353.15 gi|156937670|ref|YP_001435466.1| - 0.0097 15.0 0.0 0.013 14.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase IMD PF08397.6 gi|156937671|ref|YP_001435467.1| - 0.017 14.4 3.3 0.021 14.1 2.3 1.1 1 0 0 1 1 1 0 IRSp53/MIM homology domain UPF0118 PF01594.11 gi|156937671|ref|YP_001435467.1| - 0.02 13.9 3.5 0.023 13.7 2.4 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF20 Reticulon PF02453.12 gi|156937671|ref|YP_001435467.1| - 0.032 13.8 1.5 0.04 13.5 1.1 1.2 1 0 0 1 1 1 0 Reticulon DUF3708 PF12501.3 gi|156937671|ref|YP_001435467.1| - 0.11 12.2 3.9 0.26 11.1 2.7 1.5 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter DUF912 PF06024.7 gi|156937671|ref|YP_001435467.1| - 0.29 11.1 2.1 0.37 10.8 1.5 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DASH_Dad3 PF08656.5 gi|156937671|ref|YP_001435467.1| - 0.45 10.2 2.5 1.1 8.9 1.6 1.8 1 1 1 2 2 2 0 DASH complex subunit Dad3 Tape_meas_lam_C PF09718.5 gi|156937671|ref|YP_001435467.1| - 0.54 10.1 3.7 0.81 9.6 0.2 2.4 1 1 1 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) AOX PF01786.12 gi|156937671|ref|YP_001435467.1| - 0.58 9.5 6.9 0.73 9.1 4.8 1.1 1 0 0 1 1 1 0 Alternative oxidase DUF2976 PF11190.3 gi|156937671|ref|YP_001435467.1| - 1.7 8.2 6.6 20 4.7 2.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2976) DUF2116 PF09889.4 gi|156937671|ref|YP_001435467.1| - 6.3 6.6 5.6 13 5.6 3.9 1.7 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) tRNA-synt_His PF13393.1 gi|156937672|ref|YP_001435468.1| - 3.3e-54 184.0 0.0 4.7e-54 183.5 0.0 1.2 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|156937672|ref|YP_001435468.1| - 7.4e-19 67.9 0.1 1.6e-18 66.9 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|156937672|ref|YP_001435468.1| - 1e-12 47.8 0.3 2.7e-12 46.4 0.2 1.8 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|156937672|ref|YP_001435468.1| - 1.2e-05 24.6 0.1 7.3e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|156937672|ref|YP_001435468.1| - 0.0014 17.4 1.5 0.89 8.2 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) Pyrophosphatase PF00719.14 gi|156937673|ref|YP_001435469.1| - 3.9e-61 205.0 1.3 4.5e-61 204.8 0.9 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase TrmB PF01978.14 gi|156937675|ref|YP_001435471.1| - 3.7e-05 23.3 2.2 0.00017 21.2 0.4 2.3 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|156937675|ref|YP_001435471.1| - 5.6e-05 23.3 0.2 0.00041 20.6 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|156937675|ref|YP_001435471.1| - 8.7e-05 22.6 0.0 0.00015 21.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|156937675|ref|YP_001435471.1| - 0.0014 18.2 0.0 0.0037 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain FeoC PF09012.5 gi|156937675|ref|YP_001435471.1| - 0.0014 18.3 0.6 0.0032 17.1 0.1 1.8 2 0 0 2 2 2 1 FeoC like transcriptional regulator GerE PF00196.14 gi|156937675|ref|YP_001435471.1| - 0.0028 16.9 0.0 0.0055 16.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_45 PF14947.1 gi|156937675|ref|YP_001435471.1| - 0.0034 17.1 1.2 0.01 15.6 0.3 2.1 1 1 1 2 2 2 1 Winged helix-turn-helix Sigma70_r4_2 PF08281.7 gi|156937675|ref|YP_001435471.1| - 0.008 15.6 1.3 0.014 14.8 0.1 2.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_34 PF13601.1 gi|156937675|ref|YP_001435471.1| - 0.012 15.6 0.2 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|156937675|ref|YP_001435471.1| - 0.017 15.0 0.0 0.053 13.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|156937675|ref|YP_001435471.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF2267 PF10025.4 gi|156937675|ref|YP_001435471.1| - 0.03 14.3 0.0 0.042 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) HTH_7 PF02796.10 gi|156937675|ref|YP_001435471.1| - 0.046 13.5 0.1 0.32 10.8 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase DUF4342 PF14242.1 gi|156937675|ref|YP_001435471.1| - 0.057 13.2 1.8 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) DUF387 PF04079.11 gi|156937675|ref|YP_001435471.1| - 0.06 12.7 0.2 0.39 10.0 0.1 1.8 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Rrf2 PF02082.15 gi|156937675|ref|YP_001435471.1| - 0.063 13.3 0.1 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_38 PF13936.1 gi|156937675|ref|YP_001435471.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|156937675|ref|YP_001435471.1| - 0.13 11.6 0.0 0.31 10.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PH_3 PF14593.1 gi|156937675|ref|YP_001435471.1| - 0.17 11.8 0.7 0.3 10.9 0.3 1.8 2 1 0 2 2 1 0 PH domain DUF577 PF04510.7 gi|156937675|ref|YP_001435471.1| - 0.17 11.5 3.2 2.5 7.7 0.1 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF577) Antitoxin-MazE PF04014.13 gi|156937676|ref|YP_001435472.1| - 3.2e-05 23.5 0.1 0.00012 21.6 0.1 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PGM_PMM_I PF02878.11 gi|156937678|ref|YP_001435474.1| - 3.3e-44 149.7 0.0 5.8e-44 148.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|156937678|ref|YP_001435474.1| - 9.3e-23 80.5 0.1 2.2e-22 79.3 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|156937678|ref|YP_001435474.1| - 1.5e-17 63.6 0.0 2.9e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|156937678|ref|YP_001435474.1| - 6.2e-12 45.3 0.1 1.8e-11 43.8 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ion_trans_2 PF07885.11 gi|156937679|ref|YP_001435475.1| - 1.2e-16 60.2 5.8 2.7e-16 59.0 4.0 1.6 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.13 gi|156937679|ref|YP_001435475.1| - 6.8e-08 32.5 0.1 1.3e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Ion_trans PF00520.26 gi|156937679|ref|YP_001435475.1| - 0.14 11.3 4.9 0.61 9.3 3.4 1.9 1 1 0 1 1 1 0 Ion transport protein DUF3836 PF12930.2 gi|156937680|ref|YP_001435476.1| - 0.082 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF3836) Phos_pyr_kin PF08543.7 gi|156937681|ref|YP_001435477.1| - 4e-47 160.4 0.3 5.6e-47 159.9 0.2 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|156937681|ref|YP_001435477.1| - 1.6e-42 144.7 0.0 2.9e-42 143.9 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|156937681|ref|YP_001435477.1| - 8.7e-13 48.0 0.5 1.3e-12 47.4 0.4 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|156937681|ref|YP_001435477.1| - 0.031 13.5 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate kinase HK PF02110.10 gi|156937681|ref|YP_001435477.1| - 0.043 12.9 0.1 0.067 12.3 0.1 1.3 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family Lon_C PF05362.8 gi|156937682|ref|YP_001435478.1| - 1.3e-14 54.0 0.3 2.1e-14 53.3 0.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|156937682|ref|YP_001435478.1| - 0.00055 19.4 0.0 0.0013 18.1 0.0 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase DUF72 PF01904.13 gi|156937683|ref|YP_001435479.1| - 1.7e-48 165.3 0.0 2.1e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Transket_pyr PF02779.19 gi|156937684|ref|YP_001435480.1| - 1.8e-36 125.2 0.0 2.9e-36 124.6 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|156937684|ref|YP_001435480.1| - 2.2e-22 79.2 0.2 1.3e-21 76.7 0.0 2.3 2 1 1 3 3 3 1 Transketolase, C-terminal domain PDH PF02153.12 gi|156937685|ref|YP_001435481.1| - 6.1e-30 103.9 0.0 9.6e-30 103.3 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.16 gi|156937685|ref|YP_001435481.1| - 8.2e-17 61.0 1.1 8.2e-17 61.0 0.8 1.8 2 0 0 2 2 2 1 Chorismate mutase type II F420_oxidored PF03807.12 gi|156937685|ref|YP_001435481.1| - 4.9e-15 55.7 0.1 2.4e-14 53.4 0.0 2.2 2 1 1 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|156937685|ref|YP_001435481.1| - 6.7e-11 42.2 0.0 1.6e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.4 gi|156937685|ref|YP_001435481.1| - 2.3e-09 37.0 0.0 5.2e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Rossmann-like domain Shikimate_DH PF01488.15 gi|156937685|ref|YP_001435481.1| - 1.7e-06 28.1 0.9 4.7e-05 23.5 0.0 2.7 2 1 1 3 3 3 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|156937685|ref|YP_001435481.1| - 2.5e-06 26.7 0.0 1.1e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|156937685|ref|YP_001435481.1| - 1.7e-05 24.6 0.9 0.001 18.8 0.2 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|156937685|ref|YP_001435481.1| - 0.00035 20.2 1.6 0.0022 17.6 0.1 2.7 1 1 2 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|156937685|ref|YP_001435481.1| - 0.00067 18.4 0.2 0.012 14.3 0.0 2.1 1 1 1 2 2 2 1 Nitrogenase component 1 type Oxidoreductase NAD_binding_10 PF13460.1 gi|156937685|ref|YP_001435481.1| - 0.001 19.0 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding IlvN PF07991.7 gi|156937685|ref|YP_001435481.1| - 0.0041 16.5 0.0 0.0081 15.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|156937685|ref|YP_001435481.1| - 0.018 15.5 0.1 0.079 13.4 0.0 2.1 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Wx5_PLAF3D7 PF09688.5 gi|156937685|ref|YP_001435481.1| - 0.023 14.6 0.1 0.055 13.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (Wx5_PLAF3D7) CoA_binding_2 PF13380.1 gi|156937685|ref|YP_001435481.1| - 0.055 13.6 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 CoA binding domain TrkA_N PF02254.13 gi|156937685|ref|YP_001435481.1| - 0.098 12.6 0.3 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain adh_short PF00106.20 gi|156937685|ref|YP_001435481.1| - 0.13 12.1 0.1 0.5 10.2 0.0 1.9 2 0 0 2 2 2 0 short chain dehydrogenase CENP-H PF05837.7 gi|156937685|ref|YP_001435481.1| - 0.84 9.8 4.7 0.48 10.6 0.2 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Med11 PF10280.4 gi|156937685|ref|YP_001435481.1| - 0.86 9.6 3.1 25 4.9 0.0 3.3 3 1 0 3 3 3 0 Mediator complex protein DUF1700 PF08006.6 gi|156937687|ref|YP_001435483.1| - 0.13 11.5 3.7 0.11 11.7 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Zip PF02535.17 gi|156937687|ref|YP_001435483.1| - 0.24 10.3 3.1 0.31 10.0 2.1 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Cpn60_TCP1 PF00118.19 gi|156937688|ref|YP_001435484.1| - 4e-161 536.9 8.5 4.7e-161 536.6 5.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.12 gi|156937688|ref|YP_001435484.1| - 0.00011 21.9 2.1 0.00085 19.0 0.2 2.7 2 0 0 2 2 2 1 DAK2 domain Sulfotransfer_3 PF13469.1 gi|156937689|ref|YP_001435485.1| - 1.6e-05 25.9 0.1 4.3e-05 24.4 0.0 1.9 1 1 0 1 1 1 1 Sulfotransferase family AAA_18 PF13238.1 gi|156937689|ref|YP_001435485.1| - 0.045 14.0 0.0 0.23 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sulfotransfer_1 PF00685.22 gi|156937689|ref|YP_001435485.1| - 0.046 12.9 0.2 1.8 7.7 0.2 2.4 1 1 0 1 1 1 0 Sulfotransferase domain Pyr_redox_2 PF07992.9 gi|156937690|ref|YP_001435486.1| - 1.4e-13 51.2 0.0 2.8e-13 50.2 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|156937690|ref|YP_001435486.1| - 4.9e-08 33.2 2.3 0.0018 18.6 0.8 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|156937690|ref|YP_001435486.1| - 8.5e-06 24.9 1.9 0.00034 19.6 0.9 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|156937690|ref|YP_001435486.1| - 6.9e-05 22.0 1.3 0.00019 20.6 0.3 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|156937690|ref|YP_001435486.1| - 0.00011 22.1 0.1 0.00029 20.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|156937690|ref|YP_001435486.1| - 0.00025 20.0 1.2 0.00038 19.4 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|156937690|ref|YP_001435486.1| - 0.00053 20.0 0.5 1.4 8.9 0.0 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|156937690|ref|YP_001435486.1| - 0.0012 17.9 1.1 0.7 8.8 0.0 3.1 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|156937690|ref|YP_001435486.1| - 0.0038 15.7 0.5 0.32 9.4 0.2 2.6 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|156937690|ref|YP_001435486.1| - 0.0066 16.2 1.4 2.1 8.0 0.2 2.9 2 1 1 3 3 3 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|156937690|ref|YP_001435486.1| - 0.033 13.2 0.9 2.9 6.8 0.0 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|156937690|ref|YP_001435486.1| - 0.049 12.5 0.1 0.28 10.0 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|156937690|ref|YP_001435486.1| - 0.066 11.8 0.0 0.091 11.3 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Thi4 PF01946.12 gi|156937690|ref|YP_001435486.1| - 0.1 11.6 0.4 0.22 10.6 0.3 1.5 1 0 0 1 1 1 0 Thi4 family NAD_binding_7 PF13241.1 gi|156937690|ref|YP_001435486.1| - 0.11 12.7 0.1 0.22 11.7 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|156937690|ref|YP_001435486.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.16 gi|156937690|ref|YP_001435486.1| - 0.17 11.4 0.6 0.3 10.6 0.4 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|156937690|ref|YP_001435486.1| - 0.51 9.1 4.7 0.24 10.1 1.4 1.9 2 1 0 2 2 2 0 Glucose inhibited division protein A Nol1_Nop2_Fmu PF01189.12 gi|156937691|ref|YP_001435487.1| - 1.1e-30 106.9 0.0 1.8e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 NOL1/NOP2/sun family PUA PF01472.15 gi|156937691|ref|YP_001435487.1| - 3.5e-09 36.2 0.1 1e-08 34.7 0.1 1.8 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.1 gi|156937691|ref|YP_001435487.1| - 2.4e-08 33.6 0.0 5.5e-08 32.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156937691|ref|YP_001435487.1| - 6.1e-06 26.2 0.0 1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937691|ref|YP_001435487.1| - 1.5e-05 25.5 0.0 3.1e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|156937691|ref|YP_001435487.1| - 0.0029 18.0 0.1 0.11 13.0 0.0 2.7 2 1 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|156937691|ref|YP_001435487.1| - 0.0095 15.9 0.0 0.025 14.5 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Cons_hypoth95 PF03602.10 gi|156937691|ref|YP_001435487.1| - 0.051 12.9 0.0 0.097 12.0 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 DUF1938 PF09153.5 gi|156937691|ref|YP_001435487.1| - 0.071 12.9 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) Methyltransf_25 PF13649.1 gi|156937691|ref|YP_001435487.1| - 0.13 12.6 0.0 0.25 11.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Pribosyltran PF00156.22 gi|156937693|ref|YP_001435489.1| - 5.5e-15 55.1 0.8 1.1e-14 54.2 0.6 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_6 PF13522.1 gi|156937693|ref|YP_001435489.1| - 3.5e-11 43.1 0.0 6.8e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|156937693|ref|YP_001435489.1| - 7.7e-10 38.5 0.0 1.5e-09 37.6 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|156937693|ref|YP_001435489.1| - 5.9e-09 35.0 0.1 0.0024 16.6 0.0 3.1 1 1 1 3 3 3 3 Glutamine amidotransferases class-II PRTase_3 PF15610.1 gi|156937693|ref|YP_001435489.1| - 0.028 13.3 0.1 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like Pribosyl_synth PF14572.1 gi|156937693|ref|YP_001435489.1| - 0.058 13.1 0.1 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 Phosphoribosyl synthetase-associated domain Metallophos_2 PF12850.2 gi|156937694|ref|YP_001435490.1| - 2.5e-24 85.8 0.0 2.8e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|156937694|ref|YP_001435490.1| - 0.00062 19.2 0.8 0.037 13.4 0.2 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase THUMP PF02926.12 gi|156937695|ref|YP_001435491.1| - 2.5e-08 33.9 0.2 3.7e-08 33.3 0.1 1.3 1 0 0 1 1 1 1 THUMP domain DUF1013 PF06242.6 gi|156937696|ref|YP_001435492.1| - 0.00048 20.1 0.1 0.00064 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1013) HTH_23 PF13384.1 gi|156937696|ref|YP_001435492.1| - 0.0015 18.1 0.1 0.012 15.2 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_19 PF12844.2 gi|156937696|ref|YP_001435492.1| - 0.0028 17.6 0.1 0.005 16.8 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|156937696|ref|YP_001435492.1| - 0.0039 16.9 0.3 0.0082 15.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_38 PF13936.1 gi|156937696|ref|YP_001435492.1| - 0.0054 16.2 0.0 0.0084 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|156937696|ref|YP_001435492.1| - 0.012 15.2 0.0 0.056 13.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|156937696|ref|YP_001435492.1| - 0.018 14.4 0.0 0.044 13.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RelB PF04221.7 gi|156937696|ref|YP_001435492.1| - 0.021 14.5 0.0 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 RelB antitoxin HTH_36 PF13730.1 gi|156937696|ref|YP_001435492.1| - 0.048 13.8 0.2 0.095 12.8 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rpr2 PF04032.11 gi|156937696|ref|YP_001435492.1| - 0.07 13.0 0.5 0.13 12.1 0.3 1.6 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Sigma70_r4_2 PF08281.7 gi|156937696|ref|YP_001435492.1| - 0.089 12.2 0.1 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR PF01047.17 gi|156937696|ref|YP_001435492.1| - 0.14 11.8 0.1 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 MarR family Thioredoxin_3 PF13192.1 gi|156937697|ref|YP_001435493.1| - 3.1e-27 94.1 1.5 3.6e-16 58.7 0.2 2.2 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|156937697|ref|YP_001435493.1| - 4.3e-05 23.4 1.8 0.028 14.3 0.1 3.5 2 1 1 3 3 3 2 Glutaredoxin Thioredoxin_9 PF14595.1 gi|156937697|ref|YP_001435493.1| - 0.0002 20.9 0.1 0.017 14.6 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|156937697|ref|YP_001435493.1| - 0.0023 17.9 0.1 14 5.8 0.0 3.5 2 2 1 3 3 3 1 Thioredoxin-like Thioredoxin PF00085.15 gi|156937697|ref|YP_001435493.1| - 0.0097 15.5 0.9 0.03 13.9 0.1 2.0 2 1 0 2 2 2 1 Thioredoxin DUF836 PF05768.9 gi|156937697|ref|YP_001435493.1| - 0.0098 16.1 0.0 5.3 7.3 0.0 2.3 2 0 0 2 2 2 2 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.5 gi|156937697|ref|YP_001435493.1| - 0.012 15.2 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.6 gi|156937697|ref|YP_001435493.1| - 0.097 12.5 0.0 10 6.0 0.0 2.3 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Thioredoxin_4 PF13462.1 gi|156937697|ref|YP_001435493.1| - 0.18 11.8 2.0 1.2 9.1 0.0 2.8 2 2 2 4 4 4 0 Thioredoxin Ribosomal_L15e PF00827.12 gi|156937698|ref|YP_001435494.1| - 1.8e-81 272.2 4.8 1.8e-81 272.2 3.3 1.8 1 1 1 2 2 2 1 Ribosomal L15 zf-ZPR1 PF03367.8 gi|156937699|ref|YP_001435495.1| - 0.00037 19.6 0.1 0.00056 19.0 0.0 1.3 1 0 0 1 1 1 1 ZPR1 zinc-finger domain PHD PF00628.24 gi|156937699|ref|YP_001435495.1| - 0.017 14.8 0.3 5.1 6.8 0.0 2.2 2 0 0 2 2 2 0 PHD-finger Lar_restr_allev PF14354.1 gi|156937699|ref|YP_001435495.1| - 0.032 14.5 0.3 0.055 13.7 0.2 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|156937699|ref|YP_001435495.1| - 0.054 13.4 2.3 1.3 9.0 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain PolC_DP2 PF03833.8 gi|156937699|ref|YP_001435495.1| - 0.071 10.7 0.0 0.085 10.5 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 TF_Zn_Ribbon PF08271.7 gi|156937699|ref|YP_001435495.1| - 0.089 12.1 0.6 12 5.3 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|156937699|ref|YP_001435495.1| - 0.13 11.5 0.8 5.3 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Gin PF10764.4 gi|156937699|ref|YP_001435495.1| - 0.13 11.9 1.1 7 6.4 0.0 2.3 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin Zn_Tnp_IS1595 PF12760.2 gi|156937699|ref|YP_001435495.1| - 0.16 11.7 1.3 0.34 10.7 0.9 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|156937699|ref|YP_001435495.1| - 0.53 9.7 3.5 8.4 5.9 0.7 2.7 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF2082 PF09855.4 gi|156937699|ref|YP_001435495.1| - 1.5 8.6 4.3 11 5.9 0.3 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) PmbA_TldD PF01523.11 gi|156937700|ref|YP_001435496.1| - 4.7e-50 170.5 0.5 1.5e-49 168.8 0.4 1.7 2 0 0 2 2 2 1 Putative modulator of DNA gyrase Creatininase PF02633.9 gi|156937701|ref|YP_001435497.1| - 5.3e-25 87.8 0.0 7e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase Pyr_redox_2 PF07992.9 gi|156937702|ref|YP_001435498.1| - 1e-37 129.9 2.5 1.6e-37 129.3 1.7 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|156937702|ref|YP_001435498.1| - 6e-18 64.8 5.5 2.4e-07 29.9 0.0 3.6 2 1 2 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|156937702|ref|YP_001435498.1| - 5e-15 56.0 1.0 6e-05 23.2 0.0 3.1 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|156937702|ref|YP_001435498.1| - 3.9e-13 49.6 6.6 3.1e-08 33.9 0.1 3.5 3 1 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|156937702|ref|YP_001435498.1| - 4.4e-13 48.8 6.4 1.6e-08 33.8 0.2 4.0 1 1 3 4 4 4 3 FAD binding domain FAD_oxidored PF12831.2 gi|156937702|ref|YP_001435498.1| - 7.2e-12 45.1 4.8 2.3e-10 40.1 0.4 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|156937702|ref|YP_001435498.1| - 7.6e-11 41.1 0.6 1.5e-06 26.9 0.1 2.4 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|156937702|ref|YP_001435498.1| - 1.1e-09 37.6 12.5 3.6e-05 22.7 0.4 4.0 2 2 1 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|156937702|ref|YP_001435498.1| - 2.5e-09 36.5 2.4 6.5e-08 31.9 0.1 2.6 2 1 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|156937702|ref|YP_001435498.1| - 2.6e-08 33.7 0.5 5.9e-08 32.6 0.0 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|156937702|ref|YP_001435498.1| - 4.4e-06 25.9 2.0 8.8e-05 21.7 0.2 2.7 2 1 0 3 3 3 1 FAD binding domain GMC_oxred_N PF00732.14 gi|156937702|ref|YP_001435498.1| - 6.8e-05 22.1 0.0 0.00015 21.0 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase NAD_binding_9 PF13454.1 gi|156937702|ref|YP_001435498.1| - 0.00023 20.9 1.5 0.056 13.2 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|156937702|ref|YP_001435498.1| - 0.00029 19.8 0.6 0.04 12.8 0.1 2.5 3 0 0 3 3 3 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|156937702|ref|YP_001435498.1| - 0.0019 17.3 0.6 0.21 10.5 0.0 2.7 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.16 gi|156937702|ref|YP_001435498.1| - 0.005 16.4 0.4 0.019 14.5 0.1 2.1 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.1 gi|156937702|ref|YP_001435498.1| - 0.0093 14.9 0.4 4.3 6.1 0.1 2.7 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|156937702|ref|YP_001435498.1| - 0.29 11.3 1.5 37 4.6 0.1 3.1 2 1 0 3 3 3 0 Putative NAD(P)-binding DUF4177 PF13783.1 gi|156937703|ref|YP_001435499.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) TroA PF01297.12 gi|156937705|ref|YP_001435501.1| - 3.5e-12 46.1 0.0 4.4e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family HEV_ORF1 PF02444.11 gi|156937705|ref|YP_001435501.1| - 0.088 13.0 1.8 0.55 10.4 0.5 2.2 1 1 1 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) NUDIX PF00293.23 gi|156937706|ref|YP_001435502.1| - 4e-27 94.5 0.4 4.6e-27 94.2 0.3 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|156937706|ref|YP_001435502.1| - 9.3e-06 25.0 0.1 3.1e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 NUDIX domain Amidase PF01425.16 gi|156937707|ref|YP_001435503.1| - 4.1e-108 362.0 0.0 4.6e-108 361.8 0.0 1.0 1 0 0 1 1 1 1 Amidase TIM-br_sig_trns PF09370.5 gi|156937707|ref|YP_001435503.1| - 0.12 11.3 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 TIM-barrel signal transduction protein DUF2208 PF09973.4 gi|156937709|ref|YP_001435505.1| - 5.3e-68 228.7 1.7 6e-68 228.5 1.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF106 PF01956.11 gi|156937709|ref|YP_001435505.1| - 4.5 6.7 8.8 1.1 8.7 0.8 2.3 1 1 1 2 2 2 0 Integral membrane protein DUF106 EMG1 PF03587.9 gi|156937710|ref|YP_001435506.1| - 1.4e-51 174.6 0.0 1.6e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase AIG2 PF06094.7 gi|156937711|ref|YP_001435507.1| - 4.8e-20 71.9 0.5 5.9e-20 71.6 0.4 1.1 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|156937711|ref|YP_001435507.1| - 1e-08 35.1 0.0 1.9e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 AIG2-like family CRCB PF02537.10 gi|156937712|ref|YP_001435508.1| - 3.2e-32 110.8 6.9 3.6e-32 110.6 4.8 1.0 1 0 0 1 1 1 1 CrcB-like protein EamA PF00892.15 gi|156937712|ref|YP_001435508.1| - 0.047 13.7 6.3 0.067 13.2 4.4 1.3 1 0 0 1 1 1 0 EamA-like transporter family DUF4231 PF14015.1 gi|156937712|ref|YP_001435508.1| - 0.12 12.3 0.5 0.12 12.3 0.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF4231) DUF4203 PF13886.1 gi|156937712|ref|YP_001435508.1| - 0.35 10.3 8.0 0.51 9.7 5.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) VIT1 PF01988.14 gi|156937712|ref|YP_001435508.1| - 0.53 9.7 9.8 1.1 8.6 6.8 1.6 1 1 0 1 1 1 0 VIT family DUF2628 PF10947.3 gi|156937712|ref|YP_001435508.1| - 0.78 9.5 9.8 0.65 9.8 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2628) DUF3815 PF12821.2 gi|156937712|ref|YP_001435508.1| - 1.1 9.2 9.1 31 4.5 6.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3815) DUF1761 PF08570.5 gi|156937712|ref|YP_001435508.1| - 3.9 7.4 7.7 2.5 8.1 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) FUSC_2 PF13515.1 gi|156937712|ref|YP_001435508.1| - 4 7.3 12.1 7 6.5 8.4 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DUF4235 PF14019.1 gi|156937712|ref|YP_001435508.1| - 7.3 6.5 6.1 3.3 7.6 0.1 2.8 3 1 1 4 4 4 0 Protein of unknown function (DUF4235) DUF2192 PF09958.4 gi|156937714|ref|YP_001435510.1| - 4.7e-84 281.2 4.2 5.2e-84 281.0 2.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) TFIID_90kDa PF04494.10 gi|156937714|ref|YP_001435510.1| - 0.072 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 WD40 associated region in TFIID subunit 60KD_IMP PF02096.15 gi|156937714|ref|YP_001435510.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 60Kd inner membrane protein SelB-wing_2 PF09106.6 gi|156937714|ref|YP_001435510.1| - 1.6 8.7 8.3 4.6 7.2 0.0 3.3 4 0 0 4 4 4 0 Elongation factor SelB, winged helix TruB_N PF01509.13 gi|156937715|ref|YP_001435511.1| - 3.5e-22 79.1 0.2 1.2e-16 61.1 0.1 3.0 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|156937715|ref|YP_001435511.1| - 6.9e-20 70.7 0.1 1.5e-19 69.6 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|156937715|ref|YP_001435511.1| - 9.8e-18 63.6 3.3 1.7e-17 62.8 2.3 1.4 1 0 0 1 1 1 1 PUA domain Chorismate_bind PF00425.13 gi|156937716|ref|YP_001435512.1| - 1.3e-82 276.9 0.0 1.7e-82 276.6 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|156937716|ref|YP_001435512.1| - 8.1e-12 45.3 0.0 2.8e-11 43.6 0.0 1.9 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|156937717|ref|YP_001435513.1| - 1.7e-22 79.9 0.0 4.2e-22 78.6 0.0 1.6 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Lactamase_B_2 PF12706.2 gi|156937718|ref|YP_001435514.1| - 4.7e-12 45.8 0.0 7.3e-11 41.9 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|156937718|ref|YP_001435514.1| - 9.8e-09 35.1 2.6 9.1e-06 25.4 1.7 3.3 1 1 0 2 2 2 2 Metallo-beta-lactamase superfamily Beta-Casp PF10996.3 gi|156937718|ref|YP_001435514.1| - 4.8e-08 32.9 0.0 9.3e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.7 gi|156937718|ref|YP_001435514.1| - 7.5e-08 32.0 0.3 1.8e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|156937718|ref|YP_001435514.1| - 0.0066 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain tRNA-synt_1d PF00750.14 gi|156937719|ref|YP_001435515.1| - 6.3e-53 179.8 0.4 2.7e-35 121.8 0.1 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|156937719|ref|YP_001435515.1| - 3.5e-30 104.4 0.5 2.6e-29 101.5 0.0 2.4 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|156937719|ref|YP_001435515.1| - 1.5e-12 47.8 0.1 8.4e-12 45.4 0.0 2.3 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain DUF2240 PF09999.4 gi|156937719|ref|YP_001435515.1| - 0.017 14.5 0.0 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) His_Phos_2 PF00328.17 gi|156937719|ref|YP_001435515.1| - 0.028 13.7 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) DegS PF05384.6 gi|156937719|ref|YP_001435515.1| - 0.073 12.2 0.2 0.073 12.2 0.1 2.1 2 0 0 2 2 2 0 Sensor protein DegS Robl_LC7 PF03259.12 gi|156937720|ref|YP_001435516.1| - 6.5e-12 44.8 0.6 9.7e-12 44.2 0.4 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|156937720|ref|YP_001435516.1| - 0.00058 19.4 0.0 0.00071 19.1 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF2173 PF09941.4 gi|156937720|ref|YP_001435516.1| - 0.078 12.9 0.2 0.13 12.2 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) RNA_pol_Rpo13 PF12136.3 gi|156937721|ref|YP_001435517.1| - 4.1e-18 64.8 3.5 7.2e-18 64.0 2.4 1.4 1 0 0 1 1 1 1 RNA polymerase Rpo13 subunit HTH domain gpW PF02831.10 gi|156937721|ref|YP_001435517.1| - 0.097 12.2 0.6 0.15 11.6 0.4 1.2 1 0 0 1 1 1 0 gpW Aconitase PF00330.15 gi|156937722|ref|YP_001435518.1| - 7.9e-87 291.6 7.0 2.4e-58 197.7 3.1 2.6 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|156937722|ref|YP_001435518.1| - 0.07 11.6 0.0 0.12 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Flavoprotein PF02441.14 gi|156937723|ref|YP_001435519.1| - 4.5e-15 55.4 0.0 6.6e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|156937723|ref|YP_001435519.1| - 5.9e-08 31.9 16.9 4.9e-07 29.0 1.8 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156937723|ref|YP_001435519.1| - 5.8e-06 26.4 11.1 1.3e-05 25.3 7.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156937723|ref|YP_001435519.1| - 1.8e-05 25.0 12.9 1.9e-05 24.9 8.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937723|ref|YP_001435519.1| - 9.2e-05 22.1 15.0 0.002 17.9 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156937723|ref|YP_001435519.1| - 0.00041 21.0 9.1 0.0043 17.7 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|156937723|ref|YP_001435519.1| - 0.00046 19.9 15.2 0.00077 19.2 10.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156937723|ref|YP_001435519.1| - 0.0013 19.0 9.2 0.076 13.4 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156937723|ref|YP_001435519.1| - 0.0015 18.3 17.7 0.009 15.8 2.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937723|ref|YP_001435519.1| - 0.0034 17.2 2.1 0.0034 17.2 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156937723|ref|YP_001435519.1| - 0.012 15.5 14.7 0.025 14.6 2.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156937723|ref|YP_001435519.1| - 0.027 14.7 2.8 0.027 14.7 1.9 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156937723|ref|YP_001435519.1| - 0.038 14.3 13.1 0.13 12.6 1.3 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|156937723|ref|YP_001435519.1| - 0.065 13.1 6.1 0.12 12.3 4.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA PF00004.24 gi|156937725|ref|YP_001435521.1| - 1.8e-22 79.9 0.0 4.2e-22 78.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|156937725|ref|YP_001435521.1| - 4.8e-05 24.1 0.0 0.00032 21.5 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|156937725|ref|YP_001435521.1| - 5.7e-05 23.1 0.6 0.015 15.3 0.1 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|156937725|ref|YP_001435521.1| - 0.00016 21.8 0.3 0.21 11.7 0.0 2.9 1 1 1 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|156937725|ref|YP_001435521.1| - 0.00018 21.2 5.0 0.0014 18.4 0.1 3.1 3 0 0 3 3 3 1 Archaeal ATPase AAA_5 PF07728.9 gi|156937725|ref|YP_001435521.1| - 0.0021 17.8 1.2 0.0087 15.7 0.8 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|156937725|ref|YP_001435521.1| - 0.0042 16.9 0.0 0.017 14.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|156937725|ref|YP_001435521.1| - 0.0079 15.2 0.1 0.092 11.7 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|156937725|ref|YP_001435521.1| - 0.0087 15.1 0.0 0.035 13.1 0.0 2.0 3 0 0 3 3 3 1 Zeta toxin DUF815 PF05673.8 gi|156937725|ref|YP_001435521.1| - 0.013 14.3 0.0 0.041 12.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|156937725|ref|YP_001435521.1| - 0.018 15.3 0.1 0.076 13.3 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|156937725|ref|YP_001435521.1| - 0.018 14.9 0.1 0.11 12.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|156937725|ref|YP_001435521.1| - 0.025 14.3 0.1 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|156937725|ref|YP_001435521.1| - 0.033 13.7 0.6 0.93 9.0 0.1 2.9 2 1 1 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|156937725|ref|YP_001435521.1| - 0.034 13.5 0.0 0.085 12.2 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein EF-hand_8 PF13833.1 gi|156937725|ref|YP_001435521.1| - 0.035 13.7 0.0 0.11 12.1 0.0 1.9 1 0 0 1 1 1 0 EF-hand domain pair AAA_29 PF13555.1 gi|156937725|ref|YP_001435521.1| - 0.036 13.5 0.0 0.08 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|156937725|ref|YP_001435521.1| - 0.051 12.9 0.1 0.17 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|156937725|ref|YP_001435521.1| - 0.055 13.3 0.0 0.59 10.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|156937725|ref|YP_001435521.1| - 0.076 11.7 0.1 0.19 10.3 0.0 1.7 2 0 0 2 2 2 0 TIP49 C-terminus NACHT PF05729.7 gi|156937725|ref|YP_001435521.1| - 0.092 12.3 0.5 0.36 10.4 0.1 2.1 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.16 gi|156937725|ref|YP_001435521.1| - 0.095 11.8 0.3 0.19 10.8 0.2 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Tropomyosin PF00261.15 gi|156937725|ref|YP_001435521.1| - 0.1 11.6 1.0 0.17 10.9 0.7 1.3 1 0 0 1 1 1 0 Tropomyosin FeoB_N PF02421.13 gi|156937725|ref|YP_001435521.1| - 0.14 11.4 0.4 10 5.3 0.0 2.6 2 1 1 3 3 2 0 Ferrous iron transport protein B DUF4166 PF13761.1 gi|156937726|ref|YP_001435522.1| - 0.022 14.6 0.0 0.026 14.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4166) zf-Di19 PF05605.7 gi|156937726|ref|YP_001435522.1| - 0.72 10.0 2.5 40 4.4 0.1 2.3 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DMRL_synthase PF00885.14 gi|156937727|ref|YP_001435523.1| - 2.1e-43 147.4 0.2 2.5e-43 147.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase ADSL_C PF10397.4 gi|156937727|ref|YP_001435523.1| - 0.014 15.3 0.1 0.13 12.2 0.0 2.2 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus ETF PF01012.16 gi|156937727|ref|YP_001435523.1| - 0.12 12.1 1.8 1.3 8.7 0.3 2.0 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Methyltransf_24 PF13578.1 gi|156937728|ref|YP_001435524.1| - 3.7e-12 47.0 0.0 6e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|156937728|ref|YP_001435524.1| - 3.8e-08 32.6 0.0 4.9e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|156937728|ref|YP_001435524.1| - 1.2e-07 32.3 0.1 1.6e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937728|ref|YP_001435524.1| - 0.0087 15.6 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156937728|ref|YP_001435524.1| - 0.011 15.7 0.2 0.021 14.8 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|156937728|ref|YP_001435524.1| - 0.023 15.0 0.0 0.044 14.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|156937728|ref|YP_001435524.1| - 0.085 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.15 gi|156937728|ref|YP_001435524.1| - 0.12 11.4 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase tRNA-synt_1 PF00133.17 gi|156937729|ref|YP_001435525.1| - 2.5e-28 98.4 0.0 9.8e-26 89.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|156937729|ref|YP_001435525.1| - 3.9e-08 32.3 0.0 0.0078 14.9 0.0 3.2 4 0 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|156937729|ref|YP_001435525.1| - 2.6e-05 23.6 0.0 4.9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 Anticodon_1 PF08264.8 gi|156937729|ref|YP_001435525.1| - 0.00036 20.3 0.0 0.0034 17.1 0.0 2.3 1 1 1 2 2 2 1 Anticodon-binding domain of tRNA Dynein_light PF01221.13 gi|156937729|ref|YP_001435525.1| - 0.014 15.4 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 Dynein light chain type 1 PI-PLC-X PF00388.14 gi|156937730|ref|YP_001435526.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain DSPc PF00782.15 gi|156937731|ref|YP_001435527.1| - 0.17 11.4 0.0 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 Dual specificity phosphatase, catalytic domain Met_10 PF02475.11 gi|156937732|ref|YP_001435528.1| - 7.7e-48 162.7 0.0 1.4e-47 161.9 0.0 1.3 2 0 0 2 2 2 1 Met-10+ like-protein PrmA PF06325.8 gi|156937732|ref|YP_001435528.1| - 1.9e-05 23.9 0.0 2.6e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|156937732|ref|YP_001435528.1| - 0.00011 22.1 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|156937732|ref|YP_001435528.1| - 0.00013 21.5 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|156937732|ref|YP_001435528.1| - 0.00014 22.3 0.0 0.00034 21.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156937732|ref|YP_001435528.1| - 0.0034 16.7 0.0 0.0049 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.11 gi|156937732|ref|YP_001435528.1| - 0.0063 15.4 0.0 0.0085 15.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|156937732|ref|YP_001435528.1| - 0.016 14.8 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.21 gi|156937732|ref|YP_001435528.1| - 0.097 12.2 0.0 0.25 10.8 0.0 1.7 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_16 PF10294.4 gi|156937732|ref|YP_001435528.1| - 0.13 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_11 PF08241.7 gi|156937732|ref|YP_001435528.1| - 0.14 12.6 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DNA_ligase_A_M PF01068.16 gi|156937733|ref|YP_001435529.1| - 2e-57 193.8 0.0 3.5e-57 193.0 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|156937733|ref|YP_001435529.1| - 9.3e-57 191.6 0.4 2.4e-55 187.0 0.2 1.8 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|156937733|ref|YP_001435529.1| - 5.6e-27 93.9 0.0 1.4e-26 92.7 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|156937733|ref|YP_001435529.1| - 0.00086 18.9 2.6 0.015 14.9 1.8 2.5 1 1 0 1 1 1 1 DNA ligase OB-like domain DUF1297 PF06973.7 gi|156937734|ref|YP_001435530.1| - 8.7e-80 266.4 0.0 1.2e-79 265.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|156937734|ref|YP_001435530.1| - 2.8e-49 166.0 0.0 4.2e-49 165.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|156937734|ref|YP_001435530.1| - 7.4e-05 22.5 0.1 0.23 11.1 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Aminotran_3 PF00202.16 gi|156937735|ref|YP_001435531.1| - 5.8e-84 281.8 0.0 6.8e-84 281.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.14 gi|156937735|ref|YP_001435531.1| - 0.039 12.6 0.0 0.12 11.0 0.0 1.7 2 0 0 2 2 2 0 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|156937735|ref|YP_001435531.1| - 0.051 11.8 0.0 0.071 11.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|156937737|ref|YP_001435533.1| - 8.9e-38 129.9 0.0 1.1e-37 129.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|156937737|ref|YP_001435533.1| - 7.8e-08 31.7 1.0 1.3e-07 31.0 0.7 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|156937737|ref|YP_001435533.1| - 8.2e-07 28.2 0.0 1.2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|156937737|ref|YP_001435533.1| - 1.2e-05 23.8 0.3 1.7e-05 23.3 0.2 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Pyridoxal_deC PF00282.14 gi|156937737|ref|YP_001435533.1| - 0.036 12.5 0.0 0.066 11.6 0.0 1.5 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain 2-Hacid_dh_C PF02826.14 gi|156937737|ref|YP_001435533.1| - 0.047 12.8 0.2 0.26 10.4 0.1 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SAM_adeno_trans PF01887.11 gi|156937738|ref|YP_001435534.1| - 4e-75 252.2 0.0 4.5e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_2 PF01467.21 gi|156937739|ref|YP_001435535.1| - 3.2e-19 69.5 0.0 5.3e-19 68.8 0.0 1.4 2 0 0 2 2 2 1 Cytidylyltransferase DUF59 PF01883.14 gi|156937740|ref|YP_001435536.1| - 1.3e-16 60.3 0.2 1.7e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 Germane PF10646.4 gi|156937740|ref|YP_001435536.1| - 0.086 13.0 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Sporulation and spore germination BON PF04972.12 gi|156937740|ref|YP_001435536.1| - 0.18 11.5 0.7 0.35 10.6 0.0 1.9 3 0 0 3 3 3 0 BON domain DUF2518 PF10726.4 gi|156937741|ref|YP_001435537.1| - 0.28 10.7 1.6 0.39 10.2 0.1 1.8 2 0 0 2 2 2 0 Protein of function (DUF2518) DUF2953 PF11167.3 gi|156937741|ref|YP_001435537.1| - 0.99 9.3 3.1 5.9 6.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) TAT_signal PF10518.4 gi|156937741|ref|YP_001435537.1| - 5.4 7.2 5.5 0.7 10.0 0.2 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence VIT1 PF01988.14 gi|156937743|ref|YP_001435539.1| - 6.1e-15 55.2 17.7 1.2e-13 51.0 12.3 2.0 1 1 0 1 1 1 1 VIT family tRNA_anti-codon PF01336.20 gi|156937744|ref|YP_001435540.1| - 4.3e-11 42.5 3.0 1.4e-10 40.9 1.6 1.9 1 1 1 2 2 2 2 OB-fold nucleic acid binding domain GTP_EFTU_D2 PF03144.20 gi|156937744|ref|YP_001435540.1| - 0.00014 21.9 0.7 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 DUF4131 PF13567.1 gi|156937744|ref|YP_001435540.1| - 0.029 13.7 0.1 0.045 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2187 PF09953.4 gi|156937744|ref|YP_001435540.1| - 0.11 12.2 0.5 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) HTH_45 PF14947.1 gi|156937745|ref|YP_001435541.1| - 7.1e-07 28.9 0.0 8.5e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.1 gi|156937745|ref|YP_001435541.1| - 0.0016 18.4 0.1 0.0025 17.8 0.1 1.3 1 0 0 1 1 1 1 Mrr N-terminal domain DUF4469 PF14734.1 gi|156937745|ref|YP_001435541.1| - 0.083 12.7 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4469) with IG-like fold Topoisom_bac PF01131.15 gi|156937745|ref|YP_001435541.1| - 0.12 11.2 0.2 0.14 10.9 0.1 1.0 1 0 0 1 1 1 0 DNA topoisomerase Multi-haem_cyto PF13447.1 gi|156937746|ref|YP_001435542.1| - 5e-30 104.4 19.2 3.7e-20 72.1 2.9 4.0 4 0 0 4 4 4 3 Seven times multi-haem cytochrome CxxCH Cytochrome_C554 PF13435.1 gi|156937746|ref|YP_001435542.1| - 7.3e-10 39.0 23.0 0.0023 17.9 2.3 5.4 3 1 2 5 5 5 5 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|156937746|ref|YP_001435542.1| - 3.4e-09 36.2 24.5 0.0099 15.4 3.2 6.0 4 1 1 5 5 5 5 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|156937746|ref|YP_001435542.1| - 4.6e-08 33.2 22.0 0.017 15.4 2.2 5.3 3 1 2 5 5 5 3 Cytochrome c3 Paired_CXXCH_1 PF09699.5 gi|156937746|ref|YP_001435542.1| - 1.2e-05 24.7 27.4 4.7 6.8 0.0 7.7 7 1 0 7 7 7 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_CIII PF02085.11 gi|156937746|ref|YP_001435542.1| - 0.00083 19.4 23.2 0.089 12.9 0.5 5.2 3 1 1 5 5 5 3 Class III cytochrome C family Cytochrome_CBB3 PF13442.1 gi|156937746|ref|YP_001435542.1| - 0.58 10.3 29.4 16 5.7 0.0 7.8 4 3 2 7 7 7 0 Cytochrome C oxidase, cbb3-type, subunit III GCC2_GCC3 PF07699.8 gi|156937746|ref|YP_001435542.1| - 2.7 7.6 7.8 6 6.5 0.1 4.2 4 0 0 4 4 4 0 GCC2 and GCC3 Cytochrom_NNT PF03264.9 gi|156937746|ref|YP_001435542.1| - 3.8 6.8 31.6 1.2 8.5 0.1 6.3 4 2 0 5 5 5 0 NapC/NirT cytochrome c family, N-terminal region RibD_C PF01872.12 gi|156937747|ref|YP_001435543.1| - 4.2e-34 117.9 0.0 5.1e-34 117.6 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain SKI PF01202.17 gi|156937748|ref|YP_001435544.1| - 7.3e-05 22.6 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Shikimate kinase AAA_18 PF13238.1 gi|156937748|ref|YP_001435544.1| - 0.00055 20.2 0.8 0.013 15.8 0.4 2.5 1 1 1 2 2 2 1 AAA domain CPT PF07931.7 gi|156937748|ref|YP_001435544.1| - 0.0053 16.4 0.3 0.054 13.1 0.0 2.4 2 1 1 3 3 3 1 Chloramphenicol phosphotransferase-like protein RNA_binding PF01877.12 gi|156937749|ref|YP_001435545.1| - 3.9e-18 65.5 0.0 6.6e-18 64.8 0.0 1.4 1 1 0 1 1 1 1 RNA binding Radical_SAM PF04055.16 gi|156937750|ref|YP_001435546.1| - 4.6e-16 59.4 0.0 2.3e-15 57.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|156937750|ref|YP_001435546.1| - 1.6e-05 24.7 0.0 0.00012 21.9 0.0 2.1 2 0 0 2 2 2 1 B12 binding domain Prismane PF03063.15 gi|156937751|ref|YP_001435547.1| - 3.6e-113 378.6 0.0 1.3e-98 330.7 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family ILVD_EDD PF00920.16 gi|156937752|ref|YP_001435548.1| - 1.2e-221 736.7 0.1 1.4e-221 736.4 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family MMPL PF03176.10 gi|156937753|ref|YP_001435549.1| - 1.9e-56 191.1 14.5 1.6e-36 125.6 0.9 2.5 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.14 gi|156937753|ref|YP_001435549.1| - 6.5e-10 37.1 2.0 6.5e-10 37.1 1.4 2.0 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family Phage_Gp14 PF10666.4 gi|156937753|ref|YP_001435549.1| - 0.014 15.2 0.2 0.028 14.2 0.1 1.5 1 0 0 1 1 1 0 Phage protein Gp14 TIP49 PF06068.8 gi|156937754|ref|YP_001435550.1| - 8.6e-152 505.4 0.8 1e-151 505.2 0.6 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|156937754|ref|YP_001435550.1| - 1.8e-10 41.1 0.1 4.5e-07 30.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|156937754|ref|YP_001435550.1| - 3.1e-09 36.2 4.1 4.1e-07 29.2 0.1 3.1 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|156937754|ref|YP_001435550.1| - 1.1e-07 32.0 0.1 0.021 14.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|156937754|ref|YP_001435550.1| - 2.5e-07 30.8 0.6 1.3e-05 25.3 0.4 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|156937754|ref|YP_001435550.1| - 0.00019 21.1 0.2 0.0005 19.7 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|156937754|ref|YP_001435550.1| - 0.0003 20.5 0.6 0.0022 17.7 0.1 2.5 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|156937754|ref|YP_001435550.1| - 0.00078 20.2 1.9 0.0012 19.6 0.1 2.2 2 2 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|156937754|ref|YP_001435550.1| - 0.00083 18.8 0.8 0.002 17.5 0.6 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|156937754|ref|YP_001435550.1| - 0.0013 18.2 0.1 0.0027 17.1 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|156937754|ref|YP_001435550.1| - 0.0013 19.0 1.2 0.0036 17.6 0.2 2.3 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|156937754|ref|YP_001435550.1| - 0.0014 18.5 0.1 0.0055 16.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|156937754|ref|YP_001435550.1| - 0.0043 16.2 2.4 0.0057 15.8 0.5 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_32 PF13654.1 gi|156937754|ref|YP_001435550.1| - 0.0054 15.4 0.8 0.4 9.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|156937754|ref|YP_001435550.1| - 0.0075 15.9 0.1 0.02 14.5 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.1 gi|156937754|ref|YP_001435550.1| - 0.013 15.0 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|156937754|ref|YP_001435550.1| - 0.014 14.8 0.2 0.13 11.7 0.1 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_28 PF13521.1 gi|156937754|ref|YP_001435550.1| - 0.015 15.2 0.3 0.056 13.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain DBI_PRT PF02277.12 gi|156937754|ref|YP_001435550.1| - 0.016 14.3 1.0 0.029 13.4 0.7 1.4 1 0 0 1 1 1 0 Phosphoribosyltransferase KaiC PF06745.8 gi|156937754|ref|YP_001435550.1| - 0.02 13.9 0.1 0.043 12.9 0.1 1.7 1 0 0 1 1 1 0 KaiC DUF2075 PF09848.4 gi|156937754|ref|YP_001435550.1| - 0.024 13.6 0.0 0.046 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|156937754|ref|YP_001435550.1| - 0.026 13.7 0.2 0.055 12.6 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein Zeta_toxin PF06414.7 gi|156937754|ref|YP_001435550.1| - 0.028 13.5 0.4 0.058 12.4 0.3 1.5 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase_2 PF13335.1 gi|156937754|ref|YP_001435550.1| - 0.037 14.4 0.1 0.092 13.1 0.1 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|156937754|ref|YP_001435550.1| - 0.041 13.4 0.7 0.12 11.9 0.3 1.9 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 ResIII PF04851.10 gi|156937754|ref|YP_001435550.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|156937754|ref|YP_001435550.1| - 0.069 12.3 0.0 0.21 10.7 0.0 1.7 2 0 0 2 2 2 0 Isopentenyl transferase MCM PF00493.18 gi|156937754|ref|YP_001435550.1| - 0.073 11.8 0.8 2.8 6.6 0.1 2.4 2 1 0 2 2 2 0 MCM2/3/5 family AAA_24 PF13479.1 gi|156937754|ref|YP_001435550.1| - 0.084 12.4 0.3 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|156937754|ref|YP_001435550.1| - 0.12 11.8 0.1 0.19 11.1 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|156937754|ref|YP_001435550.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Ribosomal_L3 PF00297.17 gi|156937755|ref|YP_001435551.1| - 4.4e-51 173.8 0.1 7.4e-51 173.0 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|156937756|ref|YP_001435552.1| - 3.8e-39 134.0 0.4 4.7e-39 133.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|156937757|ref|YP_001435553.1| - 1.1e-19 70.1 3.9 2.1e-19 69.2 2.7 1.5 1 1 0 1 1 1 1 Ribosomal protein L23 DUF796 PF05638.7 gi|156937757|ref|YP_001435553.1| - 0.14 12.1 0.1 0.17 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF796) DUF3488 PF11992.3 gi|156937758|ref|YP_001435554.1| - 0.064 11.8 0.1 0.069 11.7 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) APS_kinase PF01583.15 gi|156937759|ref|YP_001435555.1| - 1.5e-61 206.6 0.0 1.8e-61 206.4 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|156937759|ref|YP_001435555.1| - 1.6e-11 44.2 0.0 1.8e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|156937759|ref|YP_001435555.1| - 7.3e-11 41.7 0.0 8.4e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|156937759|ref|YP_001435555.1| - 4.8e-10 39.8 0.0 8.5e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|156937759|ref|YP_001435555.1| - 4.6e-09 37.1 0.1 6.2e-09 36.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|156937759|ref|YP_001435555.1| - 1.4e-05 24.8 0.1 2.5e-05 24.0 0.0 1.6 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|156937759|ref|YP_001435555.1| - 2.1e-05 24.3 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 NTPase ArgK PF03308.11 gi|156937759|ref|YP_001435555.1| - 4.7e-05 22.2 0.0 7.2e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|156937759|ref|YP_001435555.1| - 4.8e-05 22.8 0.0 6.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|156937759|ref|YP_001435555.1| - 7.5e-05 22.4 0.0 0.00018 21.1 0.0 1.6 2 0 0 2 2 1 1 Part of AAA domain AAA_22 PF13401.1 gi|156937759|ref|YP_001435555.1| - 0.00014 21.9 0.0 0.00022 21.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|156937759|ref|YP_001435555.1| - 0.0002 21.5 0.0 0.0003 21.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|156937759|ref|YP_001435555.1| - 0.00036 20.0 0.0 0.00063 19.2 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain NACHT PF05729.7 gi|156937759|ref|YP_001435555.1| - 0.00039 20.1 0.1 0.00076 19.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Zeta_toxin PF06414.7 gi|156937759|ref|YP_001435555.1| - 0.00045 19.3 0.0 0.00086 18.4 0.0 1.3 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|156937759|ref|YP_001435555.1| - 0.00059 19.8 0.1 0.0016 18.5 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|156937759|ref|YP_001435555.1| - 0.0006 19.3 0.0 0.00093 18.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.12 gi|156937759|ref|YP_001435555.1| - 0.001 18.4 0.3 0.0023 17.3 0.1 1.7 2 0 0 2 2 1 1 Thymidylate kinase UPF0079 PF02367.12 gi|156937759|ref|YP_001435555.1| - 0.0011 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|156937759|ref|YP_001435555.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|156937759|ref|YP_001435555.1| - 0.0013 18.1 0.1 0.0014 18.1 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_14 PF13173.1 gi|156937759|ref|YP_001435555.1| - 0.0014 18.5 0.0 0.0027 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|156937759|ref|YP_001435555.1| - 0.0018 18.1 0.2 0.004 17.0 0.1 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_25 PF13481.1 gi|156937759|ref|YP_001435555.1| - 0.0024 17.3 0.2 0.004 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|156937759|ref|YP_001435555.1| - 0.0048 16.8 0.0 0.008 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|156937759|ref|YP_001435555.1| - 0.0058 15.5 0.0 0.0089 14.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.9 gi|156937759|ref|YP_001435555.1| - 0.0078 15.9 0.1 0.015 14.9 0.1 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|156937759|ref|YP_001435555.1| - 0.0082 16.4 0.0 0.011 16.0 0.0 1.4 1 1 0 1 1 1 1 ABC transporter Mg_chelatase PF01078.16 gi|156937759|ref|YP_001435555.1| - 0.01 15.0 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|156937759|ref|YP_001435555.1| - 0.011 15.9 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Cytidylate_kin2 PF13189.1 gi|156937759|ref|YP_001435555.1| - 0.029 14.2 0.1 0.25 11.2 0.0 2.2 1 1 1 2 2 2 0 Cytidylate kinase-like family ATP_bind_1 PF03029.12 gi|156937759|ref|YP_001435555.1| - 0.033 13.7 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Viral_helicase1 PF01443.13 gi|156937759|ref|YP_001435555.1| - 0.036 13.5 0.0 0.07 12.6 0.0 1.5 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase MipZ PF09140.6 gi|156937759|ref|YP_001435555.1| - 0.04 13.0 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ LytR_C PF13399.1 gi|156937759|ref|YP_001435555.1| - 0.043 14.1 0.0 0.07 13.5 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator Arch_ATPase PF01637.13 gi|156937759|ref|YP_001435555.1| - 0.059 13.0 0.1 0.076 12.7 0.1 1.6 1 1 0 1 1 1 0 Archaeal ATPase RuvB_N PF05496.7 gi|156937759|ref|YP_001435555.1| - 0.077 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus KaiC PF06745.8 gi|156937759|ref|YP_001435555.1| - 0.081 12.0 0.0 0.18 10.9 0.0 1.5 2 0 0 2 2 1 0 KaiC ADK PF00406.17 gi|156937759|ref|YP_001435555.1| - 0.091 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylate kinase KAP_NTPase PF07693.9 gi|156937759|ref|YP_001435555.1| - 0.11 11.5 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_11 PF13086.1 gi|156937759|ref|YP_001435555.1| - 0.11 12.0 0.0 0.11 11.9 0.0 1.3 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|156937759|ref|YP_001435555.1| - 0.11 11.4 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase DUF2075 PF09848.4 gi|156937759|ref|YP_001435555.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PIF1 PF05970.9 gi|156937759|ref|YP_001435555.1| - 0.12 11.2 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.12 gi|156937759|ref|YP_001435555.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_3 PF07726.6 gi|156937759|ref|YP_001435555.1| - 0.14 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|156937759|ref|YP_001435555.1| - 0.15 11.6 0.1 0.23 10.9 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Phosphodiest PF01663.17 gi|156937760|ref|YP_001435556.1| - 2.8e-48 165.1 0.0 3.4e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|156937760|ref|YP_001435556.1| - 0.019 14.1 0.0 0.035 13.3 0.0 1.6 1 1 0 1 1 1 0 Sulfatase DUF229 PF02995.12 gi|156937760|ref|YP_001435556.1| - 0.18 10.2 0.0 1.2 7.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF229) ATP-sulfurylase PF01747.12 gi|156937761|ref|YP_001435557.1| - 1e-93 312.5 0.1 1.8e-93 311.8 0.0 1.3 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|156937761|ref|YP_001435557.1| - 1.9e-51 173.6 0.0 3e-51 173.0 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain Nudix_N_2 PF14803.1 gi|156937761|ref|YP_001435557.1| - 0.051 13.2 1.7 1.6 8.4 0.3 2.5 2 0 0 2 2 2 0 Nudix N-terminal RHH_1 PF01402.16 gi|156937762|ref|YP_001435558.1| - 0.00019 21.1 1.3 0.76 9.7 0.0 2.6 2 1 0 2 2 2 2 Ribbon-helix-helix protein, copG family DASH_Dad3 PF08656.5 gi|156937762|ref|YP_001435558.1| - 0.037 13.7 2.1 0.17 11.5 0.8 1.9 1 1 1 2 2 2 0 DASH complex subunit Dad3 CorA PF01544.13 gi|156937762|ref|YP_001435558.1| - 0.046 12.7 0.1 0.047 12.7 0.1 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein CCDC-167 PF15188.1 gi|156937762|ref|YP_001435558.1| - 0.054 13.4 1.0 0.079 12.9 0.7 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 RHH_3 PF12651.2 gi|156937762|ref|YP_001435558.1| - 0.082 12.6 1.5 2 8.1 0.0 2.7 3 0 0 3 3 3 0 Ribbon-helix-helix domain CheR_N PF03705.10 gi|156937762|ref|YP_001435558.1| - 0.089 12.1 0.1 0.17 11.2 0.0 1.5 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain HTH_22 PF13309.1 gi|156937762|ref|YP_001435558.1| - 0.095 12.4 1.1 0.098 12.4 0.1 1.5 2 0 0 2 2 2 0 HTH domain Packaging_FI PF14000.1 gi|156937762|ref|YP_001435558.1| - 0.36 11.0 4.1 0.41 10.8 1.5 1.8 1 1 1 2 2 2 0 DNA packaging protein FI TauE PF01925.14 gi|156937763|ref|YP_001435559.1| - 5e-08 32.6 22.4 5.9e-08 32.4 15.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Sulfatase PF00884.18 gi|156937764|ref|YP_001435560.1| - 0.0035 16.5 0.0 0.017 14.2 0.0 2.1 1 1 0 1 1 1 1 Sulfatase HAD PF12710.2 gi|156937764|ref|YP_001435560.1| - 0.084 13.0 0.0 2.8 8.0 0.0 2.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Med30 PF11315.3 gi|156937764|ref|YP_001435560.1| - 0.12 12.5 1.4 6.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Mediator complex subunit 30 Cupin_2 PF07883.6 gi|156937765|ref|YP_001435561.1| - 1.7e-10 40.2 0.0 2.3e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|156937765|ref|YP_001435561.1| - 4.1e-07 29.7 0.3 4.6e-07 29.5 0.2 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF1498 PF07385.7 gi|156937765|ref|YP_001435561.1| - 4.7e-05 22.6 0.1 0.014 14.5 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1498) AraC_binding PF02311.14 gi|156937765|ref|YP_001435561.1| - 0.00018 21.2 0.0 0.00023 20.8 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|156937765|ref|YP_001435561.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 Cupin Ectoine_synth PF06339.7 gi|156937765|ref|YP_001435561.1| - 0.071 13.0 0.0 0.082 12.8 0.0 1.1 1 0 0 1 1 1 0 Ectoine synthase Peptidase_M24 PF00557.19 gi|156937765|ref|YP_001435561.1| - 0.075 12.6 0.0 0.075 12.6 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase family M24 PBP_like_2 PF12849.2 gi|156937766|ref|YP_001435562.1| - 3.8e-51 174.2 1.0 4.8e-51 173.8 0.7 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|156937766|ref|YP_001435562.1| - 2e-15 57.3 3.4 7.2e-15 55.5 2.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|156937766|ref|YP_001435562.1| - 4.6e-10 38.7 0.0 1.1e-09 37.4 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_8 PF13416.1 gi|156937766|ref|YP_001435562.1| - 2e-06 27.7 0.1 3.2e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|156937766|ref|YP_001435562.1| - 0.00026 20.7 0.6 0.00041 20.0 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|156937766|ref|YP_001435562.1| - 0.028 13.7 0.4 2.4 7.4 0.0 2.5 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein Lactamase_B PF00753.22 gi|156937767|ref|YP_001435563.1| - 1.1e-05 25.1 1.2 1.6e-05 24.6 0.8 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|156937767|ref|YP_001435563.1| - 3.8e-05 23.3 0.2 0.00012 21.7 0.1 1.9 1 1 1 2 2 2 1 Beta-lactamase superfamily domain ResIII PF04851.10 gi|156937768|ref|YP_001435564.1| - 2.5e-13 50.2 0.0 5.9e-13 49.0 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|156937768|ref|YP_001435564.1| - 9.1e-11 41.4 0.0 2.2e-10 40.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|156937768|ref|YP_001435564.1| - 3e-07 30.0 1.4 7.3e-05 22.3 0.3 2.6 2 1 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|156937768|ref|YP_001435564.1| - 0.00075 19.1 0.9 0.0024 17.4 0.6 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|156937768|ref|YP_001435564.1| - 0.001 19.1 0.0 0.0035 17.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|156937768|ref|YP_001435564.1| - 0.0059 16.0 0.3 2.3 7.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein Helicase_RecD PF05127.9 gi|156937768|ref|YP_001435564.1| - 0.0073 15.9 0.1 0.026 14.1 0.0 2.0 1 0 0 1 1 1 1 Helicase PhoH PF02562.11 gi|156937768|ref|YP_001435564.1| - 0.013 14.7 2.5 0.07 12.3 1.8 2.1 1 1 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.1 gi|156937768|ref|YP_001435564.1| - 0.044 13.5 1.8 0.086 12.6 0.2 2.3 2 0 0 2 2 2 0 Part of AAA domain EF-hand_10 PF14788.1 gi|156937768|ref|YP_001435564.1| - 2.9 7.6 5.6 1.7 8.3 0.1 3.2 3 0 0 3 3 3 0 EF hand LSM PF01423.17 gi|156937769|ref|YP_001435565.1| - 1.8e-18 65.8 0.1 2.1e-18 65.6 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|156937769|ref|YP_001435565.1| - 0.012 15.4 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF4497 PF14924.1 gi|156937769|ref|YP_001435565.1| - 0.087 13.1 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4497) Ribosomal_L37e PF01907.14 gi|156937770|ref|YP_001435566.1| - 4.4e-26 90.4 14.6 5e-26 90.2 10.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|156937770|ref|YP_001435566.1| - 0.01 15.6 0.7 0.012 15.3 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon Stc1 PF12898.2 gi|156937770|ref|YP_001435566.1| - 0.016 15.2 0.5 0.018 15.0 0.3 1.1 1 0 0 1 1 1 0 Stc1 domain GCC2_GCC3 PF07699.8 gi|156937770|ref|YP_001435566.1| - 0.034 13.7 0.8 0.045 13.3 0.5 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 zf-HIT PF04438.11 gi|156937770|ref|YP_001435566.1| - 0.42 10.2 3.3 10 5.8 0.2 2.2 2 0 0 2 2 2 0 HIT zinc finger FdhE PF04216.7 gi|156937770|ref|YP_001435566.1| - 0.67 9.6 2.9 0.66 9.6 2.0 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Proteasome PF00227.21 gi|156937771|ref|YP_001435567.1| - 1.9e-54 183.8 0.2 2.1e-54 183.6 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Iso_dh PF00180.15 gi|156937773|ref|YP_001435569.1| - 7e-100 334.3 0.1 8.6e-100 334.0 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|156937773|ref|YP_001435569.1| - 0.003 16.8 0.1 0.0062 15.7 0.1 1.5 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA HMGL-like PF00682.14 gi|156937774|ref|YP_001435570.1| - 4.9e-81 271.8 1.9 7.1e-81 271.3 1.3 1.2 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.16 gi|156937774|ref|YP_001435570.1| - 0.0058 16.8 0.3 0.088 12.9 0.1 2.5 2 1 0 2 2 2 1 Radical SAM superfamily DUF362 PF04015.7 gi|156937774|ref|YP_001435570.1| - 0.051 13.0 0.4 17 4.8 0.0 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF362) CCDC32 PF14989.1 gi|156937775|ref|YP_001435571.1| - 0.019 14.8 0.2 0.025 14.4 0.1 1.2 1 0 0 1 1 1 0 Coiled-coil domain containing 32 EntA_Immun PF08951.5 gi|156937775|ref|YP_001435571.1| - 0.028 14.5 0.6 0.028 14.5 0.4 2.4 3 0 0 3 3 3 0 Enterocin A Immunity TEX12 PF15219.1 gi|156937775|ref|YP_001435571.1| - 0.037 14.0 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Testis-expressed 12 tRNA-synt_His PF13393.1 gi|156937775|ref|YP_001435571.1| - 0.09 11.8 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase DUF2059 PF09832.4 gi|156937775|ref|YP_001435571.1| - 0.11 12.4 0.1 0.35 10.9 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2059) PsiE PF06146.7 gi|156937776|ref|YP_001435572.1| - 0.00091 19.4 5.1 0.00091 19.4 3.6 1.9 2 0 0 2 2 2 1 Phosphate-starvation-inducible E 7tm_7 PF08395.7 gi|156937776|ref|YP_001435572.1| - 0.057 12.4 1.9 0.093 11.7 1.3 1.3 1 1 0 1 1 1 0 7tm Chemosensory receptor RDD PF06271.7 gi|156937776|ref|YP_001435572.1| - 5 7.0 12.8 1.3 8.9 0.3 2.7 2 1 0 2 2 2 0 RDD family HAD_2 PF13419.1 gi|156937777|ref|YP_001435573.1| - 4.1e-11 43.4 0.0 5.6e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|156937777|ref|YP_001435573.1| - 6.5e-09 36.5 0.1 3e-07 31.0 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|156937777|ref|YP_001435573.1| - 3.3e-07 30.6 0.0 4.5e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|156937777|ref|YP_001435573.1| - 2.4e-05 24.0 0.0 6.2e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|156937777|ref|YP_001435573.1| - 0.041 13.1 0.1 0.46 9.7 0.0 2.1 1 1 1 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DUF3140 PF11338.3 gi|156937777|ref|YP_001435573.1| - 0.057 13.5 0.1 0.12 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3140) Hydrolase_6 PF13344.1 gi|156937777|ref|YP_001435573.1| - 0.086 12.7 0.0 4.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ORC3_N PF07034.6 gi|156937777|ref|YP_001435573.1| - 0.11 11.4 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus RNA_pol_Rpb4 PF03874.11 gi|156937778|ref|YP_001435574.1| - 3.7e-07 30.1 1.2 5.3e-07 29.6 0.8 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 cwf21 PF08312.7 gi|156937778|ref|YP_001435574.1| - 0.083 12.7 4.7 0.047 13.5 1.2 2.2 2 1 0 2 2 2 0 cwf21 domain TBP PF00352.16 gi|156937779|ref|YP_001435575.1| - 2.9e-70 231.6 0.4 6.3e-34 115.1 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|156937779|ref|YP_001435575.1| - 3e-05 23.9 0.0 0.038 14.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Spore_YhaL PF14147.1 gi|156937779|ref|YP_001435575.1| - 0.0051 16.2 2.2 1 8.8 0.1 3.3 3 0 0 3 3 3 1 Sporulation protein YhaL HMA PF00403.21 gi|156937779|ref|YP_001435575.1| - 1.1 9.4 5.5 18 5.5 0.2 3.2 3 0 0 3 3 3 0 Heavy-metal-associated domain tRNA-synt_2b PF00587.20 gi|156937780|ref|YP_001435576.1| - 6.5e-38 130.0 0.0 1.3e-37 129.0 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|156937780|ref|YP_001435576.1| - 2.5e-21 75.7 12.4 4.9e-21 74.7 8.6 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain PcfJ PF14284.1 gi|156937780|ref|YP_001435576.1| - 0.00084 18.8 1.6 0.0015 18.0 1.1 1.4 1 0 0 1 1 1 1 PcfJ-like protein APG6 PF04111.7 gi|156937780|ref|YP_001435576.1| - 0.0062 15.6 2.6 0.039 12.9 2.7 1.7 2 0 0 2 2 2 1 Autophagy protein Apg6 GrpE PF01025.14 gi|156937780|ref|YP_001435576.1| - 0.036 13.6 3.7 0.075 12.5 2.6 1.5 1 0 0 1 1 1 0 GrpE DUF1971 PF09313.6 gi|156937780|ref|YP_001435576.1| - 0.075 12.7 0.3 0.5 10.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1971) Syntaxin PF00804.20 gi|156937780|ref|YP_001435576.1| - 0.11 12.7 2.2 0.21 11.7 1.5 1.4 1 0 0 1 1 1 0 Syntaxin Rgp1 PF08737.5 gi|156937780|ref|YP_001435576.1| - 0.11 11.5 0.4 0.15 11.0 0.3 1.2 1 0 0 1 1 1 0 Rgp1 Mit_ribos_Mrp51 PF11709.3 gi|156937780|ref|YP_001435576.1| - 0.13 11.4 1.3 0.2 10.8 0.9 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit Borrelia_P83 PF05262.6 gi|156937780|ref|YP_001435576.1| - 0.34 9.1 4.5 0.49 8.5 3.1 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein VSG_B PF13206.1 gi|156937780|ref|YP_001435576.1| - 0.39 9.7 5.1 0.58 9.2 3.5 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain TPR_MLP1_2 PF07926.7 gi|156937780|ref|YP_001435576.1| - 0.49 10.1 11.1 1.1 8.9 7.7 1.6 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein AAA_13 PF13166.1 gi|156937780|ref|YP_001435576.1| - 0.59 8.5 5.6 0.81 8.0 3.9 1.1 1 0 0 1 1 1 0 AAA domain tRNA-synt_His PF13393.1 gi|156937780|ref|YP_001435576.1| - 0.78 8.7 4.7 18 4.2 1.8 2.3 2 0 0 2 2 2 0 Histidyl-tRNA synthetase FliT PF05400.8 gi|156937780|ref|YP_001435576.1| - 0.8 10.1 11.1 24 5.4 0.0 2.9 2 0 0 2 2 2 0 Flagellar protein FliT DUF342 PF03961.8 gi|156937780|ref|YP_001435576.1| - 7.3 4.8 8.2 12 4.2 5.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) tRNA-synt_1e PF01406.14 gi|156937781|ref|YP_001435577.1| - 1.2e-126 421.9 0.2 1.6e-126 421.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|156937781|ref|YP_001435577.1| - 2.3e-24 85.7 2.1 3.8e-12 45.5 0.5 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|156937781|ref|YP_001435577.1| - 1.2e-09 36.8 0.0 1.9e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|156937781|ref|YP_001435577.1| - 5.5e-08 32.9 0.0 1.2e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.13 gi|156937781|ref|YP_001435577.1| - 2.3e-06 26.5 0.6 6.4e-05 21.7 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) SH3BP5 PF05276.9 gi|156937781|ref|YP_001435577.1| - 0.001 18.4 0.4 0.032 13.5 0.0 2.3 2 0 0 2 2 2 1 SH3 domain-binding protein 5 (SH3BP5) tRNA-synt_1d PF00750.14 gi|156937781|ref|YP_001435577.1| - 0.011 14.6 1.4 1.8 7.3 0.1 3.3 3 1 1 4 4 4 0 tRNA synthetases class I (R) DUF1042 PF06294.6 gi|156937781|ref|YP_001435577.1| - 0.037 13.6 0.2 0.065 12.8 0.1 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1042) Tweety PF04906.8 gi|156937781|ref|YP_001435577.1| - 0.13 10.6 0.0 0.25 9.7 0.0 1.4 1 0 0 1 1 1 0 Tweety Memo PF01875.12 gi|156937782|ref|YP_001435578.1| - 1.4e-81 273.4 0.0 1.5e-81 273.2 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|156937782|ref|YP_001435578.1| - 0.021 13.7 0.0 0.22 10.4 0.0 2.0 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Epimerase PF01370.16 gi|156937783|ref|YP_001435579.1| - 3.4e-55 187.0 0.0 4.1e-55 186.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|156937783|ref|YP_001435579.1| - 1.8e-26 92.6 0.0 2.2e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|156937783|ref|YP_001435579.1| - 2.4e-21 75.8 0.0 1.4e-16 60.1 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|156937783|ref|YP_001435579.1| - 1.3e-19 69.9 0.0 1.8e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|156937783|ref|YP_001435579.1| - 3.8e-15 55.5 0.3 8.2e-11 41.3 0.0 2.9 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|156937783|ref|YP_001435579.1| - 4.6e-09 36.5 0.0 6.1e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|156937783|ref|YP_001435579.1| - 2.9e-07 30.5 0.0 0.022 14.6 0.0 2.7 3 0 0 3 3 3 2 short chain dehydrogenase KR PF08659.5 gi|156937783|ref|YP_001435579.1| - 0.00022 20.9 0.2 0.41 10.2 0.0 2.3 1 1 1 2 2 2 2 KR domain Epimerase_Csub PF13950.1 gi|156937783|ref|YP_001435579.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Semialdhyde_dh PF01118.19 gi|156937783|ref|YP_001435579.1| - 0.03 14.6 0.4 1.5 9.1 0.0 2.7 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain AAA PF00004.24 gi|156937784|ref|YP_001435580.1| - 3.6e-40 137.2 0.0 6.5e-40 136.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|156937784|ref|YP_001435580.1| - 9.5e-10 38.4 0.0 4.5e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|156937784|ref|YP_001435580.1| - 5e-09 36.3 0.0 1.2e-07 31.9 0.0 2.8 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|156937784|ref|YP_001435580.1| - 1.1e-07 31.1 0.0 2.3e-06 26.8 0.0 2.2 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|156937784|ref|YP_001435580.1| - 1.8e-07 30.9 0.0 8.1e-07 28.8 0.0 2.2 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|156937784|ref|YP_001435580.1| - 2.4e-07 30.8 0.0 4.9e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|156937784|ref|YP_001435580.1| - 2.4e-07 30.9 0.1 0.00049 20.1 0.0 3.3 3 1 1 4 4 4 1 AAA ATPase domain Vps4_C PF09336.5 gi|156937784|ref|YP_001435580.1| - 1.4e-06 28.0 0.0 5.1e-05 23.0 0.0 2.4 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.1 gi|156937784|ref|YP_001435580.1| - 3e-06 28.0 0.1 1.6e-05 25.7 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|156937784|ref|YP_001435580.1| - 3.5e-06 26.9 0.0 9e-06 25.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|156937784|ref|YP_001435580.1| - 4.7e-05 23.2 0.8 0.12 12.0 0.0 3.3 2 1 2 4 4 4 2 Archaeal ATPase MIT PF04212.13 gi|156937784|ref|YP_001435580.1| - 7.4e-05 22.5 4.9 8e-05 22.4 2.1 2.1 2 0 0 2 2 1 1 MIT (microtubule interacting and transport) domain AAA_25 PF13481.1 gi|156937784|ref|YP_001435580.1| - 0.00012 21.5 0.6 0.083 12.2 0.1 2.6 2 1 1 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|156937784|ref|YP_001435580.1| - 0.00033 20.3 0.1 0.014 15.1 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain Zeta_toxin PF06414.7 gi|156937784|ref|YP_001435580.1| - 0.00039 19.5 0.0 0.002 17.2 0.0 2.2 2 1 0 2 2 2 1 Zeta toxin TIP49 PF06068.8 gi|156937784|ref|YP_001435580.1| - 0.0004 19.2 0.0 0.00084 18.1 0.0 1.5 1 1 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|156937784|ref|YP_001435580.1| - 0.0016 17.9 0.0 0.0029 17.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|156937784|ref|YP_001435580.1| - 0.0018 18.5 0.0 0.0098 16.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|156937784|ref|YP_001435580.1| - 0.0037 17.4 0.0 0.011 15.9 0.0 2.0 1 1 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.16 gi|156937784|ref|YP_001435580.1| - 0.0037 16.4 0.1 0.0095 15.1 0.1 1.8 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI SKI PF01202.17 gi|156937784|ref|YP_001435580.1| - 0.0048 16.7 0.0 0.044 13.6 0.0 2.3 2 0 0 2 2 2 1 Shikimate kinase KaiC PF06745.8 gi|156937784|ref|YP_001435580.1| - 0.0054 15.8 0.1 1.9 7.5 0.0 2.8 2 1 1 3 3 3 1 KaiC ABC_tran PF00005.22 gi|156937784|ref|YP_001435580.1| - 0.015 15.6 0.0 0.026 14.8 0.0 1.6 1 1 0 1 1 1 0 ABC transporter DUF815 PF05673.8 gi|156937784|ref|YP_001435580.1| - 0.016 14.1 0.0 0.29 10.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|156937784|ref|YP_001435580.1| - 0.02 14.5 0.0 0.094 12.3 0.0 2.1 1 1 1 2 2 2 0 NACHT domain AAA_28 PF13521.1 gi|156937784|ref|YP_001435580.1| - 0.02 14.8 0.0 0.054 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|156937784|ref|YP_001435580.1| - 0.024 14.1 0.0 0.052 13.0 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|156937784|ref|YP_001435580.1| - 0.052 13.0 0.0 0.2 11.1 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|156937784|ref|YP_001435580.1| - 0.087 12.3 0.1 0.38 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|156937784|ref|YP_001435580.1| - 0.09 12.1 0.0 2.5 7.4 0.0 2.8 1 1 0 1 1 1 0 AAA-like domain Bac_DnaA PF00308.13 gi|156937784|ref|YP_001435580.1| - 0.092 12.3 0.0 0.2 11.2 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_3 PF07726.6 gi|156937784|ref|YP_001435580.1| - 0.098 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|156937784|ref|YP_001435580.1| - 0.1 11.8 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.10 gi|156937784|ref|YP_001435580.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|156937784|ref|YP_001435580.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TPR_2 PF07719.12 gi|156937784|ref|YP_001435580.1| - 1.5 8.9 5.7 1.9 8.6 0.9 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat GntR PF00392.16 gi|156937785|ref|YP_001435581.1| - 1.2e-06 27.8 0.5 4.5e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|156937785|ref|YP_001435581.1| - 2.2e-05 23.7 0.2 7.5e-05 22.0 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.7 gi|156937785|ref|YP_001435581.1| - 6e-05 22.4 0.0 0.00015 21.2 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|156937785|ref|YP_001435581.1| - 7.5e-05 22.3 3.6 0.0042 16.6 0.1 3.0 3 0 0 3 3 3 1 HTH domain HTH_Crp_2 PF13545.1 gi|156937785|ref|YP_001435581.1| - 0.00011 21.9 1.4 0.00017 21.3 0.0 2.1 3 0 0 3 3 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|156937785|ref|YP_001435581.1| - 0.00011 21.7 3.0 0.0002 21.0 0.8 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|156937785|ref|YP_001435581.1| - 0.00052 20.1 0.1 0.0011 19.0 0.1 1.6 1 0 0 1 1 1 1 FaeA-like protein Rrf2 PF02082.15 gi|156937785|ref|YP_001435581.1| - 0.001 19.1 0.1 0.0026 17.8 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.5 gi|156937785|ref|YP_001435581.1| - 0.0011 18.6 0.0 0.0026 17.4 0.0 1.7 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_36 PF13730.1 gi|156937785|ref|YP_001435581.1| - 0.0017 18.4 0.8 0.0031 17.6 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|156937785|ref|YP_001435581.1| - 0.0023 18.3 0.0 0.0051 17.2 0.0 1.6 1 0 0 1 1 1 1 Replication protein A C terminal PCI PF01399.22 gi|156937785|ref|YP_001435581.1| - 0.0026 18.0 0.9 0.068 13.4 0.0 2.5 2 1 0 2 2 2 1 PCI domain HTH_AsnC-type PF13404.1 gi|156937785|ref|YP_001435581.1| - 0.0069 15.9 0.0 0.018 14.6 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain PaaX PF07848.7 gi|156937785|ref|YP_001435581.1| - 0.0085 16.0 0.1 0.02 14.8 0.1 1.6 1 0 0 1 1 1 1 PaaX-like protein LexA_DNA_bind PF01726.11 gi|156937785|ref|YP_001435581.1| - 0.02 14.4 0.1 0.046 13.2 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_9 PF08221.6 gi|156937785|ref|YP_001435581.1| - 0.037 13.9 0.1 0.1 12.4 0.1 1.8 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF4061 PF13270.1 gi|156937785|ref|YP_001435581.1| - 0.044 13.8 1.1 0.094 12.8 0.3 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4061) MarR_2 PF12802.2 gi|156937785|ref|YP_001435581.1| - 0.047 13.3 0.0 0.098 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|156937785|ref|YP_001435581.1| - 0.054 13.0 0.1 0.21 11.1 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|156937785|ref|YP_001435581.1| - 0.055 13.3 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_20 PF12840.2 gi|156937785|ref|YP_001435581.1| - 0.066 13.0 0.1 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|156937785|ref|YP_001435581.1| - 0.072 12.6 0.0 0.072 12.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Syntaxin_2 PF14523.1 gi|156937785|ref|YP_001435581.1| - 0.16 12.0 3.7 0.13 12.3 0.3 2.4 3 0 0 3 3 3 0 Syntaxin-like protein RNA_pol_Rpb2_4 PF04566.8 gi|156937785|ref|YP_001435581.1| - 0.17 11.7 0.6 0.39 10.5 0.2 1.8 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 4 IncA PF04156.9 gi|156937785|ref|YP_001435581.1| - 0.18 11.4 5.5 0.36 10.4 3.8 1.6 1 0 0 1 1 1 0 IncA protein CorA PF01544.13 gi|156937785|ref|YP_001435581.1| - 0.47 9.4 4.1 0.71 8.8 2.9 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TBPIP PF07106.8 gi|156937785|ref|YP_001435581.1| - 0.64 9.5 11.1 3.3 7.2 0.1 2.6 2 1 1 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Osmo_CC PF08946.5 gi|156937785|ref|YP_001435581.1| - 0.85 9.7 6.1 0.31 11.1 1.2 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Syntaxin-6_N PF09177.6 gi|156937785|ref|YP_001435581.1| - 1 9.8 5.8 1 9.7 1.2 2.6 2 1 1 3 3 3 0 Syntaxin 6, N-terminal V_ATPase_I PF01496.14 gi|156937785|ref|YP_001435581.1| - 1.1 6.9 5.7 1.5 6.6 4.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF972 PF06156.8 gi|156937785|ref|YP_001435581.1| - 5 7.5 8.9 0.98 9.7 2.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF972) DivIC PF04977.10 gi|156937785|ref|YP_001435581.1| - 8.5 5.9 11.8 1.2 8.7 2.3 2.8 2 1 1 3 3 3 0 Septum formation initiator Fmp27_WPPW PF10359.4 gi|156937786|ref|YP_001435582.1| - 0.0011 17.5 6.0 0.0042 15.5 4.1 1.7 1 1 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DUF342 PF03961.8 gi|156937786|ref|YP_001435582.1| - 0.0024 16.3 3.1 0.0028 16.1 2.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) GvpG PF05120.7 gi|156937786|ref|YP_001435582.1| - 0.0024 17.6 2.3 0.0024 17.6 1.6 2.5 1 1 1 2 2 2 1 Gas vesicle protein G PRC PF05239.11 gi|156937786|ref|YP_001435582.1| - 0.0051 16.6 0.1 0.0087 15.9 0.1 1.4 1 0 0 1 1 1 1 PRC-barrel domain CorA PF01544.13 gi|156937786|ref|YP_001435582.1| - 0.0058 15.6 2.3 0.0069 15.4 1.6 1.2 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Rsd_AlgQ PF04353.8 gi|156937786|ref|YP_001435582.1| - 0.0098 15.6 2.3 0.011 15.4 0.4 1.9 2 0 0 2 2 2 1 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DUF1664 PF07889.7 gi|156937786|ref|YP_001435582.1| - 0.011 15.5 7.6 0.061 13.1 5.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF4618 PF15397.1 gi|156937786|ref|YP_001435582.1| - 0.022 14.0 10.5 0.031 13.6 7.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) DUF883 PF05957.8 gi|156937786|ref|YP_001435582.1| - 0.024 15.0 1.6 0.024 15.0 1.1 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FliD_C PF07195.7 gi|156937786|ref|YP_001435582.1| - 0.024 13.9 1.7 0.025 13.8 0.3 1.7 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus PRP1_N PF06424.7 gi|156937786|ref|YP_001435582.1| - 0.035 14.4 2.9 0.035 14.4 2.0 2.1 2 0 0 2 2 2 0 PRP1 splicing factor, N-terminal DnaB_2 PF07261.6 gi|156937786|ref|YP_001435582.1| - 0.036 13.6 4.0 0.7 9.5 0.0 2.6 1 1 1 2 2 2 0 Replication initiation and membrane attachment Syntaxin-6_N PF09177.6 gi|156937786|ref|YP_001435582.1| - 0.042 14.2 7.7 0.34 11.3 0.3 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal UDPGT PF00201.13 gi|156937786|ref|YP_001435582.1| - 0.043 12.3 0.0 0.058 11.9 0.0 1.1 1 0 0 1 1 1 0 UDP-glucoronosyl and UDP-glucosyl transferase Baculo_PEP_C PF04513.7 gi|156937786|ref|YP_001435582.1| - 0.051 13.3 0.9 0.14 11.9 0.6 1.9 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spectrin PF00435.16 gi|156937786|ref|YP_001435582.1| - 0.069 13.4 8.3 0.21 11.8 1.1 2.5 2 1 0 2 2 2 0 Spectrin repeat Leu_zip PF15294.1 gi|156937786|ref|YP_001435582.1| - 0.082 12.0 10.8 0.11 11.5 7.5 1.2 1 0 0 1 1 1 0 Leucine zipper LMBR1 PF04791.11 gi|156937786|ref|YP_001435582.1| - 0.1 11.1 4.3 0.14 10.7 3.0 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF1319 PF07028.6 gi|156937786|ref|YP_001435582.1| - 0.21 11.7 15.4 0.36 11.0 2.7 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1319) AAA_13 PF13166.1 gi|156937786|ref|YP_001435582.1| - 0.23 9.8 6.7 0.31 9.4 4.7 1.1 1 0 0 1 1 1 0 AAA domain Prefoldin_2 PF01920.15 gi|156937786|ref|YP_001435582.1| - 0.23 11.2 16.0 0.92 9.3 3.8 2.7 2 1 0 2 2 2 0 Prefoldin subunit MutS_III PF05192.13 gi|156937786|ref|YP_001435582.1| - 0.26 11.0 2.4 0.43 10.3 1.7 1.3 1 0 0 1 1 1 0 MutS domain III BLOC1_2 PF10046.4 gi|156937786|ref|YP_001435582.1| - 0.39 10.8 11.4 0.3 11.2 3.1 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 XPG_I_2 PF12813.2 gi|156937786|ref|YP_001435582.1| - 0.41 10.0 5.0 0.7 9.3 3.4 1.4 1 1 0 1 1 1 0 XPG domain containing ALIX_LYPXL_bnd PF13949.1 gi|156937786|ref|YP_001435582.1| - 0.55 9.1 14.7 8 5.3 10.2 2.0 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV YlqD PF11068.3 gi|156937786|ref|YP_001435582.1| - 0.81 9.7 15.2 0.75 9.8 6.2 2.2 1 1 1 2 2 2 0 YlqD protein DUF4375 PF14300.1 gi|156937786|ref|YP_001435582.1| - 0.87 9.5 6.7 0.31 11.0 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4375) Muted PF14942.1 gi|156937786|ref|YP_001435582.1| - 0.96 9.3 10.5 0.36 10.7 2.1 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Endotoxin_N PF03945.9 gi|156937786|ref|YP_001435582.1| - 1.3 8.3 4.3 2.1 7.6 0.8 2.1 1 1 1 2 2 2 0 delta endotoxin, N-terminal domain DASH_Dam1 PF08653.5 gi|156937786|ref|YP_001435582.1| - 1.5 8.6 4.0 2.6 7.8 0.4 2.7 1 1 2 3 3 3 0 DASH complex subunit Dam1 DUF919 PF06034.6 gi|156937786|ref|YP_001435582.1| - 1.5 8.4 10.8 0.33 10.5 1.0 2.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF1002 PF06207.6 gi|156937786|ref|YP_001435582.1| - 1.9 7.7 7.2 0.99 8.6 3.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1002) COG2 PF06148.6 gi|156937786|ref|YP_001435582.1| - 4.5 7.1 11.9 2.3 8.0 3.3 3.0 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 WXG100 PF06013.7 gi|156937786|ref|YP_001435582.1| - 4.6 7.3 7.0 13 5.8 0.1 3.4 2 1 2 4 4 4 0 Proteins of 100 residues with WXG ISG65-75 PF11727.3 gi|156937786|ref|YP_001435582.1| - 5.3 6.0 9.2 7.5 5.5 0.3 2.0 1 1 0 2 2 2 0 Invariant surface glycoprotein Uds1 PF15456.1 gi|156937786|ref|YP_001435582.1| - 6.7 6.7 15.3 10 6.1 3.6 2.2 1 1 1 2 2 2 0 Up-regulated During Septation THOC7 PF05615.8 gi|156937786|ref|YP_001435582.1| - 7.7 6.7 16.2 20 5.4 2.4 2.6 2 1 1 3 3 3 0 Tho complex subunit 7 DUF724 PF05266.9 gi|156937786|ref|YP_001435582.1| - 8.1 6.0 15.6 0.3 10.6 4.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Matrilin_ccoil PF10393.4 gi|156937786|ref|YP_001435582.1| - 8.3 5.8 10.8 9.1 5.7 0.1 3.1 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Diphthamide_syn PF01866.12 gi|156937788|ref|YP_001435584.1| - 4.5e-62 210.0 0.0 5.1e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Kelch_1 PF01344.20 gi|156937788|ref|YP_001435584.1| - 0.077 12.5 0.0 0.21 11.1 0.0 1.7 1 0 0 1 1 1 0 Kelch motif AIRS_C PF02769.17 gi|156937788|ref|YP_001435584.1| - 0.11 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain Ribosomal_L16 PF00252.13 gi|156937789|ref|YP_001435585.1| - 1.4e-30 105.7 0.1 1.6e-30 105.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e TYW3 PF02676.9 gi|156937790|ref|YP_001435586.1| - 5.3e-32 110.6 0.0 6.5e-32 110.3 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 Gp_dh_C PF02800.15 gi|156937791|ref|YP_001435587.1| - 5.3e-24 84.4 0.1 7.6e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|156937791|ref|YP_001435587.1| - 3.6e-21 75.7 0.1 3.8e-20 72.3 0.0 2.4 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|156937791|ref|YP_001435587.1| - 3.4e-13 49.5 0.2 8.6e-13 48.2 0.2 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|156937791|ref|YP_001435587.1| - 1.6e-05 25.1 0.1 0.00019 21.7 0.0 2.3 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|156937791|ref|YP_001435587.1| - 0.0017 18.7 0.1 0.006 16.9 0.0 1.9 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|156937791|ref|YP_001435587.1| - 0.0026 16.7 0.1 0.012 14.6 0.1 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|156937791|ref|YP_001435587.1| - 0.015 14.4 0.3 0.38 9.8 0.2 2.9 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|156937791|ref|YP_001435587.1| - 0.036 14.5 0.0 0.18 12.3 0.0 2.2 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold FeoB_N PF02421.13 gi|156937792|ref|YP_001435588.1| - 5.3e-49 165.4 0.0 1e-48 164.5 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|156937792|ref|YP_001435588.1| - 1.7e-26 92.2 20.0 6.5e-18 64.6 4.0 3.9 5 0 0 5 5 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|156937792|ref|YP_001435588.1| - 1.6e-17 63.5 0.0 3.5e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|156937792|ref|YP_001435588.1| - 2.6e-13 49.1 1.9 2.6e-13 49.1 1.3 3.4 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus AIG1 PF04548.11 gi|156937792|ref|YP_001435588.1| - 0.00026 20.1 0.0 0.00044 19.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|156937792|ref|YP_001435588.1| - 0.00027 21.4 0.1 0.0015 19.0 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein Dynamin_N PF00350.18 gi|156937792|ref|YP_001435588.1| - 0.00045 20.0 0.1 0.0025 17.6 0.1 1.8 1 1 1 2 2 2 1 Dynamin family IIGP PF05049.8 gi|156937792|ref|YP_001435588.1| - 0.0014 17.4 0.0 0.018 13.8 0.0 2.1 2 0 0 2 2 2 1 Interferon-inducible GTPase (IIGP) AAA_17 PF13207.1 gi|156937792|ref|YP_001435588.1| - 0.0015 19.3 0.3 0.082 13.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|156937792|ref|YP_001435588.1| - 0.015 14.4 0.0 0.033 13.3 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|156937792|ref|YP_001435588.1| - 0.096 12.3 0.1 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Ras PF00071.17 gi|156937792|ref|YP_001435588.1| - 0.098 12.0 0.1 0.27 10.6 0.0 1.9 1 1 0 1 1 1 0 Ras family AAA_10 PF12846.2 gi|156937792|ref|YP_001435588.1| - 0.2 11.0 0.0 0.34 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain DUF2342 PF10103.4 gi|156937793|ref|YP_001435589.1| - 0.064 12.1 0.1 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2342) DUF959 PF06121.9 gi|156937793|ref|YP_001435589.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.0 1 0 0 1 1 1 0 Domain of Unknown Function (DUF959) Peptidase_S8 PF00082.17 gi|156937795|ref|YP_001435591.1| - 1.2e-17 64.0 0.3 1.4e-13 50.6 0.1 2.1 2 0 0 2 2 2 2 Subtilase family SNN_linker PF09050.5 gi|156937795|ref|YP_001435591.1| - 0.13 11.8 0.2 0.32 10.5 0.2 1.6 1 0 0 1 1 1 0 Stannin unstructured linker Rad51 PF08423.6 gi|156937796|ref|YP_001435592.1| - 7.1e-93 310.2 0.0 8.5e-93 309.9 0.0 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|156937796|ref|YP_001435592.1| - 2.2e-13 49.9 0.0 3.1e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|156937796|ref|YP_001435592.1| - 9.8e-13 47.9 0.0 1.5e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.1 gi|156937796|ref|YP_001435592.1| - 1.1e-12 47.8 0.3 3.6e-12 46.2 0.2 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain KaiC PF06745.8 gi|156937796|ref|YP_001435592.1| - 5.8e-11 41.9 0.1 1.1e-10 40.9 0.1 1.5 1 1 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|156937796|ref|YP_001435592.1| - 0.0001 22.0 0.0 0.00038 20.2 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|156937796|ref|YP_001435592.1| - 0.00017 21.0 0.1 0.0016 17.9 0.0 2.6 2 1 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|156937796|ref|YP_001435592.1| - 0.00064 19.2 2.4 0.027 14.1 0.0 3.0 3 0 0 3 3 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|156937796|ref|YP_001435592.1| - 0.00071 19.4 0.0 0.0017 18.2 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|156937796|ref|YP_001435592.1| - 0.0035 17.3 0.1 0.018 15.0 0.0 2.3 2 0 0 2 2 2 1 IMS family HHH motif SAM_2 PF07647.12 gi|156937796|ref|YP_001435592.1| - 0.0056 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 SAM domain (Sterile alpha motif) DUF3173 PF11372.3 gi|156937796|ref|YP_001435592.1| - 0.0074 15.8 0.3 0.029 13.9 0.0 2.2 3 0 0 3 3 2 1 Domain of unknown function (DUF3173) DUF4332 PF14229.1 gi|156937796|ref|YP_001435592.1| - 0.021 14.8 0.0 0.064 13.2 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4332) AAA_18 PF13238.1 gi|156937796|ref|YP_001435592.1| - 0.031 14.5 0.9 0.3 11.3 0.0 2.7 2 1 1 3 3 3 0 AAA domain 5_3_exonuc PF01367.15 gi|156937796|ref|YP_001435592.1| - 0.045 13.9 0.1 0.15 12.3 0.0 1.9 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|156937796|ref|YP_001435592.1| - 0.065 13.1 0.0 7.8 6.5 0.0 3.1 2 1 1 3 3 3 0 Helix-hairpin-helix motif HhH-GPD PF00730.20 gi|156937796|ref|YP_001435592.1| - 0.068 13.4 0.0 0.17 12.2 0.0 1.8 2 1 0 2 2 1 0 HhH-GPD superfamily base excision DNA repair protein SAM_1 PF00536.25 gi|156937796|ref|YP_001435592.1| - 0.078 13.1 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) AAA_24 PF13479.1 gi|156937796|ref|YP_001435592.1| - 0.098 12.2 0.0 0.21 11.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|156937796|ref|YP_001435592.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|156937796|ref|YP_001435592.1| - 0.14 11.8 0.1 4.1 7.0 0.0 2.2 1 1 1 2 2 2 0 Archaeal ATPase Enolase_C PF00113.17 gi|156937797|ref|YP_001435593.1| - 2.3e-115 384.6 0.0 3.1e-115 384.2 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|156937797|ref|YP_001435593.1| - 3.9e-55 185.3 0.1 6.8e-55 184.5 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|156937797|ref|YP_001435593.1| - 0.00016 22.1 0.1 0.00057 20.3 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|156937797|ref|YP_001435593.1| - 0.00033 20.5 0.0 0.001 19.0 0.0 1.9 1 0 0 1 1 1 1 Enolase C-terminal domain-like MFS_1 PF07690.11 gi|156937798|ref|YP_001435594.1| - 4.6e-22 78.2 37.2 4.6e-22 78.2 25.8 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|156937798|ref|YP_001435594.1| - 6.6e-06 24.9 10.0 6.6e-06 24.9 6.9 2.3 2 1 0 2 2 2 1 Sugar (and other) transporter T2SE PF00437.15 gi|156937799|ref|YP_001435595.1| - 3.6e-50 170.3 0.0 6.8e-50 169.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|156937799|ref|YP_001435595.1| - 0.0023 17.4 0.0 0.0052 16.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|156937799|ref|YP_001435595.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.13 gi|156937799|ref|YP_001435595.1| - 0.026 13.9 0.4 0.39 10.1 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|156937799|ref|YP_001435595.1| - 0.065 13.5 0.0 0.94 9.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain Arg_tRNA_synt_N PF03485.11 gi|156937799|ref|YP_001435595.1| - 0.12 12.8 0.0 0.89 10.1 0.0 2.3 2 0 0 2 2 2 0 Arginyl tRNA synthetase N terminal domain ABC_tran PF00005.22 gi|156937799|ref|YP_001435595.1| - 0.12 12.6 0.0 0.47 10.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_30 PF13604.1 gi|156937799|ref|YP_001435595.1| - 0.51 9.8 2.6 1.2 8.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain T2SF PF00482.18 gi|156937800|ref|YP_001435596.1| - 2.4e-05 24.2 0.6 2.4e-05 24.2 0.4 3.1 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|156937800|ref|YP_001435596.1| - 4.8 5.6 8.8 0.4 9.2 2.0 1.8 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF106 PF01956.11 gi|156937800|ref|YP_001435596.1| - 8.5 5.8 10.6 5.2 6.5 3.6 2.2 2 0 0 2 2 2 0 Integral membrane protein DUF106 T2SF PF00482.18 gi|156937801|ref|YP_001435597.1| - 4e-10 39.6 0.9 4e-10 39.6 0.6 2.4 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F ABC2_membrane_4 PF12730.2 gi|156937801|ref|YP_001435597.1| - 0.2 10.7 12.3 0.028 13.5 1.9 2.5 2 1 1 3 3 3 0 ABC-2 family transporter protein MFS_1 PF07690.11 gi|156937802|ref|YP_001435598.1| - 2.7e-06 26.3 45.0 0.012 14.2 2.1 3.7 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1358 PF07096.6 gi|156937802|ref|YP_001435598.1| - 1.5 8.4 6.0 0.49 10.0 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1358) Ribosomal_S30 PF04758.9 gi|156937803|ref|YP_001435599.1| - 5.7e-11 41.9 1.3 7.3e-11 41.6 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 MazG PF03819.12 gi|156937805|ref|YP_001435601.1| - 4.9e-13 48.8 0.5 6.9e-13 48.3 0.3 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DUF3052 PF11253.3 gi|156937805|ref|YP_001435601.1| - 0.12 11.9 0.1 0.15 11.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) Herpes_LMP1 PF05297.6 gi|156937806|ref|YP_001435602.1| - 0.047 12.6 2.4 0.047 12.6 1.7 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) YesK PF14150.1 gi|156937806|ref|YP_001435602.1| - 0.12 12.4 3.2 0.16 12.0 2.2 1.2 1 0 0 1 1 1 0 YesK-like protein Ion_trans_2 PF07885.11 gi|156937806|ref|YP_001435602.1| - 0.5 10.1 3.6 1.1 9.0 1.0 2.0 2 0 0 2 2 2 0 Ion channel ATP_synt_I PF03899.10 gi|156937806|ref|YP_001435602.1| - 0.87 9.7 6.3 1 9.5 4.3 1.0 1 0 0 1 1 1 0 ATP synthase I chain tRNA-synt_1 PF00133.17 gi|156937807|ref|YP_001435603.1| - 1.3e-181 604.6 11.7 1.7e-181 604.3 8.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|156937807|ref|YP_001435603.1| - 5.4e-28 97.6 1.6 5.4e-28 97.6 1.1 1.9 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|156937807|ref|YP_001435603.1| - 1.2e-23 83.4 5.1 7.5e-09 34.7 0.3 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|156937807|ref|YP_001435603.1| - 7.9e-07 28.4 0.4 0.00074 18.7 0.0 3.4 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|156937807|ref|YP_001435603.1| - 7.3e-06 24.8 0.0 9.4e-05 21.2 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (K) DUF4355 PF14265.1 gi|156937807|ref|YP_001435603.1| - 9.7e-05 22.3 2.0 0.00071 19.5 0.4 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4355) tRNA-synt_1_2 PF13603.1 gi|156937807|ref|YP_001435603.1| - 0.04 13.2 0.0 0.11 11.8 0.0 1.7 1 0 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 zf-TFIIB PF13453.1 gi|156937807|ref|YP_001435603.1| - 0.048 12.8 3.3 5.4 6.2 0.0 4.1 4 0 0 4 4 4 0 Transcription factor zinc-finger Jag_N PF14804.1 gi|156937807|ref|YP_001435603.1| - 0.058 13.4 0.3 0.058 13.4 0.2 2.1 2 0 0 2 2 2 0 Jag N-terminus Zn-ribbon_8 PF09723.5 gi|156937807|ref|YP_001435603.1| - 0.077 12.9 1.0 6.2 6.8 0.0 3.4 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|156937807|ref|YP_001435603.1| - 7.3 6.3 6.5 6.9 6.4 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156937807|ref|YP_001435603.1| - 8.1 5.8 8.5 46 3.4 0.7 3.3 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|156937807|ref|YP_001435603.1| - 9.3 5.9 7.0 5.7 6.6 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Methyltransf_26 PF13659.1 gi|156937808|ref|YP_001435604.1| - 4.7e-07 29.8 0.1 1.1e-06 28.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|156937808|ref|YP_001435604.1| - 0.065 12.3 0.1 0.087 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|156937808|ref|YP_001435604.1| - 0.096 12.2 0.0 0.19 11.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain BPD_transp_1 PF00528.17 gi|156937809|ref|YP_001435605.1| - 2.6e-06 27.0 3.6 3.9e-06 26.5 2.5 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|156937810|ref|YP_001435606.1| - 0.0021 17.6 6.6 0.025 14.1 0.6 2.7 2 2 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|156937811|ref|YP_001435607.1| - 1.1e-69 235.0 0.1 1.5e-69 234.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Nitro_FeMo-Co PF02579.12 gi|156937812|ref|YP_001435608.1| - 2e-11 43.7 0.0 2.3e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Gly_kinase PF02595.10 gi|156937812|ref|YP_001435608.1| - 0.018 13.7 0.0 0.022 13.4 0.0 1.1 1 0 0 1 1 1 0 Glycerate kinase family VanZ PF04892.7 gi|156937813|ref|YP_001435609.1| - 8.1e-08 32.2 0.2 4.9e-07 29.7 0.2 2.0 1 1 0 1 1 1 1 VanZ like family AsnC_trans_reg PF01037.16 gi|156937817|ref|YP_001435613.1| - 1.4e-15 56.7 0.2 1.5e-15 56.6 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|156937817|ref|YP_001435613.1| - 0.00088 18.9 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 GYD domain NapD PF03927.8 gi|156937817|ref|YP_001435613.1| - 0.0015 18.2 0.1 0.0019 17.9 0.1 1.1 1 0 0 1 1 1 1 NapD protein Thioredoxin_4 PF13462.1 gi|156937818|ref|YP_001435614.1| - 3.8e-08 33.5 0.0 6.2e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin TSP_3 PF02412.13 gi|156937819|ref|YP_001435615.1| - 8.5e-06 25.1 2.3 8.5e-06 25.1 1.6 17.1 17 3 0 17 17 17 8 Thrombospondin type 3 repeat Laminin_G_3 PF13385.1 gi|156937820|ref|YP_001435616.1| - 6.8e-23 81.6 0.2 2.4e-22 79.8 0.1 1.9 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.19 gi|156937820|ref|YP_001435616.1| - 0.12 12.4 0.0 3.7 7.5 0.0 2.8 2 1 0 2 2 2 0 Laminin G domain Virul_fac_BrkB PF03631.10 gi|156937821|ref|YP_001435617.1| - 0.00037 19.9 2.0 0.00037 19.9 1.4 3.6 3 1 1 4 4 4 1 Virulence factor BrkB DUF1622 PF07784.6 gi|156937821|ref|YP_001435617.1| - 0.043 13.4 0.8 1.4 8.5 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1622) MerC PF03203.9 gi|156937821|ref|YP_001435617.1| - 0.12 12.7 11.2 0.051 13.9 2.5 2.8 2 1 1 3 3 3 0 MerC mercury resistance protein AFOR_C PF01314.13 gi|156937822|ref|YP_001435618.1| - 4.4e-139 463.3 0.1 5.4e-139 463.1 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|156937822|ref|YP_001435618.1| - 5e-75 251.2 1.2 5.4e-75 251.1 0.1 1.6 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PALP PF00291.20 gi|156937824|ref|YP_001435620.1| - 3.7e-73 246.4 2.8 4.3e-73 246.2 2.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|156937824|ref|YP_001435620.1| - 0.0078 15.8 0.2 0.014 15.0 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family PK_C PF02887.11 gi|156937824|ref|YP_001435620.1| - 0.017 14.6 2.2 0.02 14.4 0.3 2.1 2 1 1 3 3 3 0 Pyruvate kinase, alpha/beta domain Zn-ribbon_8 PF09723.5 gi|156937824|ref|YP_001435620.1| - 0.017 15.0 0.6 0.036 14.0 0.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|156937824|ref|YP_001435620.1| - 0.16 11.8 0.6 0.28 11.0 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|156937824|ref|YP_001435620.1| - 0.16 11.2 1.5 0.31 10.3 1.0 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|156937824|ref|YP_001435620.1| - 0.17 11.3 3.1 0.52 9.8 2.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|156937824|ref|YP_001435620.1| - 0.98 9.1 2.8 17 5.1 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type adh_short_C2 PF13561.1 gi|156937826|ref|YP_001435622.1| - 1.7e-25 90.1 0.0 2e-25 89.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|156937826|ref|YP_001435622.1| - 7.1e-25 87.8 0.1 1.2e-24 87.1 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|156937826|ref|YP_001435622.1| - 7.8e-08 32.1 0.0 1.2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|156937826|ref|YP_001435622.1| - 0.00075 19.5 0.0 0.002 18.1 0.0 1.7 1 1 0 1 1 1 1 NADH(P)-binding UPF0150 PF03681.10 gi|156937826|ref|YP_001435622.1| - 0.16 11.6 1.7 0.35 10.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) Lactamase_B_2 PF12706.2 gi|156937827|ref|YP_001435623.1| - 4e-34 117.8 0.0 5.9e-34 117.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|156937827|ref|YP_001435623.1| - 2.9e-12 46.6 0.1 1e-10 41.6 0.1 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|156937827|ref|YP_001435623.1| - 0.0039 16.6 0.0 0.0074 15.7 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DUF357 PF04010.8 gi|156937829|ref|YP_001435625.1| - 8.8e-22 76.5 0.6 1.8e-21 75.6 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|156937829|ref|YP_001435625.1| - 1.3e-15 57.7 0.0 3.5e-15 56.3 0.0 1.7 2 1 0 2 2 2 1 Cytidylyltransferase Peripla_BP_2 PF01497.13 gi|156937829|ref|YP_001435625.1| - 4.3e-05 22.7 0.0 0.00073 18.7 0.0 2.2 2 0 0 2 2 2 1 Periplasmic binding protein FAD_syn PF06574.7 gi|156937829|ref|YP_001435625.1| - 0.011 15.4 0.0 0.038 13.6 0.0 1.8 2 0 0 2 2 2 0 FAD synthetase Pantoate_ligase PF02569.10 gi|156937829|ref|YP_001435625.1| - 0.023 13.4 0.0 0.039 12.7 0.0 1.3 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase SAP PF02037.22 gi|156937829|ref|YP_001435625.1| - 0.038 13.4 0.8 0.091 12.2 0.5 1.6 1 0 0 1 1 1 0 SAP domain Ish1 PF10281.4 gi|156937829|ref|YP_001435625.1| - 0.053 13.6 0.0 0.17 11.9 0.0 1.9 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein Antitoxin-MazE PF04014.13 gi|156937830|ref|YP_001435626.1| - 2.1e-06 27.3 1.0 7.2e-06 25.6 0.1 2.2 2 0 0 2 2 2 1 Antidote-toxin recognition MazE ACT_4 PF13291.1 gi|156937830|ref|YP_001435626.1| - 4.3e-05 23.7 0.0 6.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|156937830|ref|YP_001435626.1| - 0.0012 18.3 0.0 0.0024 17.3 0.0 1.6 1 1 0 1 1 1 1 ACT domain MraZ PF02381.13 gi|156937830|ref|YP_001435626.1| - 0.0038 16.9 0.0 0.0073 16.0 0.0 1.4 1 0 0 1 1 1 1 MraZ protein Radical_SAM PF04055.16 gi|156937830|ref|YP_001435626.1| - 0.036 14.2 0.1 0.039 14.1 0.0 1.1 1 0 0 1 1 1 0 Radical SAM superfamily DUF2286 PF10051.4 gi|156937831|ref|YP_001435627.1| - 1.9e-42 144.2 1.7 2.1e-42 144.1 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DUF3799 PF12684.2 gi|156937831|ref|YP_001435627.1| - 0.094 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) PHP PF02811.14 gi|156937832|ref|YP_001435628.1| - 3.1e-17 62.8 0.0 6.1e-17 61.9 0.0 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|156937832|ref|YP_001435628.1| - 1.6e-13 49.9 0.1 2.8e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 PHP-associated IF3_N PF05198.11 gi|156937832|ref|YP_001435628.1| - 0.015 15.1 0.4 2.3 8.1 0.0 3.0 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain SRP54 PF00448.17 gi|156937833|ref|YP_001435629.1| - 1.3e-72 243.4 0.5 1.9e-72 242.8 0.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|156937833|ref|YP_001435629.1| - 8.1e-33 112.7 2.4 4.1e-32 110.5 0.3 2.8 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|156937833|ref|YP_001435629.1| - 7.2e-13 48.4 1.8 2.1e-12 46.9 0.1 2.7 2 1 1 3 3 2 1 SRP54-type protein, helical bundle domain AAA_33 PF13671.1 gi|156937833|ref|YP_001435629.1| - 4e-07 29.9 0.0 9.1e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|156937833|ref|YP_001435629.1| - 9.5e-07 28.6 0.9 6.7e-06 25.8 0.2 2.3 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|156937833|ref|YP_001435629.1| - 2.8e-05 23.3 0.0 6.3e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.18 gi|156937833|ref|YP_001435629.1| - 4.2e-05 23.0 0.5 0.00036 20.0 0.3 2.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|156937833|ref|YP_001435629.1| - 7.7e-05 22.8 0.0 0.00047 20.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|156937833|ref|YP_001435629.1| - 0.00023 20.6 0.7 0.0017 17.7 0.5 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|156937833|ref|YP_001435629.1| - 0.0004 19.2 0.2 0.0011 17.8 0.1 1.6 1 1 0 1 1 1 1 ArgK protein AAA_17 PF13207.1 gi|156937833|ref|YP_001435629.1| - 0.00077 20.2 1.2 0.0025 18.6 0.1 2.5 3 1 0 3 3 2 1 AAA domain 6PF2K PF01591.13 gi|156937833|ref|YP_001435629.1| - 0.0022 17.1 0.0 0.0042 16.2 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_10 PF12846.2 gi|156937833|ref|YP_001435629.1| - 0.0033 16.9 0.7 0.014 14.8 0.2 2.5 2 1 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|156937833|ref|YP_001435629.1| - 0.0035 16.7 0.1 0.15 11.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|156937833|ref|YP_001435629.1| - 0.0059 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|156937833|ref|YP_001435629.1| - 0.0073 15.9 3.1 0.012 15.1 0.8 2.2 1 1 1 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|156937833|ref|YP_001435629.1| - 0.017 14.6 0.9 0.065 12.7 0.1 2.3 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|156937833|ref|YP_001435629.1| - 0.018 14.8 1.0 0.2 11.4 0.7 2.7 1 1 0 1 1 1 0 Part of AAA domain Thymidylate_kin PF02223.12 gi|156937833|ref|YP_001435629.1| - 0.02 14.2 0.7 0.18 11.1 0.1 2.9 3 1 1 4 4 4 0 Thymidylate kinase KTI12 PF08433.5 gi|156937833|ref|YP_001435629.1| - 0.023 13.9 0.0 0.06 12.5 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|156937833|ref|YP_001435629.1| - 0.028 14.3 0.1 0.067 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|156937833|ref|YP_001435629.1| - 0.031 13.2 0.3 0.063 12.2 0.2 1.5 1 1 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA PF00004.24 gi|156937833|ref|YP_001435629.1| - 0.035 14.3 1.2 0.16 12.1 0.0 2.7 4 0 0 4 4 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|156937833|ref|YP_001435629.1| - 0.055 13.2 0.0 0.17 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_31 PF13614.1 gi|156937833|ref|YP_001435629.1| - 0.066 13.1 0.0 0.92 9.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|156937833|ref|YP_001435629.1| - 0.084 13.1 0.1 0.084 13.1 0.0 2.4 3 1 0 3 3 2 0 AAA domain AAA_16 PF13191.1 gi|156937833|ref|YP_001435629.1| - 0.1 12.5 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Amidohydro_1 PF01979.15 gi|156937835|ref|YP_001435631.1| - 3.2e-11 43.4 0.1 2.5e-08 33.9 0.0 2.2 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|156937835|ref|YP_001435631.1| - 1.7e-06 27.7 0.0 4.8e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|156937835|ref|YP_001435631.1| - 1.1e-05 25.6 0.1 0.00015 21.9 0.0 2.7 2 1 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|156937835|ref|YP_001435631.1| - 1.2e-05 24.7 0.2 3e-05 23.4 0.1 1.6 2 0 0 2 2 2 1 Amidohydrolase family MMR_HSR1 PF01926.18 gi|156937836|ref|YP_001435632.1| - 1.1e-16 60.8 0.0 1.8e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|156937836|ref|YP_001435632.1| - 2e-14 53.1 0.0 3.2e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B NOG1 PF06858.9 gi|156937836|ref|YP_001435632.1| - 1.1e-12 47.6 0.0 2e-12 46.8 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) Ras PF00071.17 gi|156937836|ref|YP_001435632.1| - 4.5e-06 26.1 0.0 9.8e-06 25.0 0.0 1.6 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.22 gi|156937836|ref|YP_001435632.1| - 9.4e-06 25.1 0.1 0.0001 21.8 0.0 2.4 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|156937836|ref|YP_001435632.1| - 2.3e-05 24.8 0.0 5e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|156937836|ref|YP_001435632.1| - 0.00032 19.8 0.0 0.00047 19.3 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Arf PF00025.16 gi|156937836|ref|YP_001435632.1| - 0.0012 18.1 0.2 0.021 14.0 0.0 2.6 2 1 0 2 2 2 1 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|156937836|ref|YP_001435632.1| - 0.0016 18.3 0.9 0.016 15.0 0.2 2.3 1 1 1 2 2 2 1 Dynamin family SRPRB PF09439.5 gi|156937836|ref|YP_001435632.1| - 0.0018 17.5 0.0 0.0044 16.2 0.0 1.6 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.7 gi|156937836|ref|YP_001435632.1| - 0.0034 16.5 0.0 0.0054 15.8 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region PduV-EutP PF10662.4 gi|156937836|ref|YP_001435632.1| - 0.0041 16.6 0.0 0.023 14.2 0.0 2.0 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|156937836|ref|YP_001435632.1| - 0.0085 15.6 0.2 0.66 9.4 0.1 2.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|156937836|ref|YP_001435632.1| - 0.0089 16.8 0.0 0.066 14.0 0.0 2.3 2 2 0 2 2 2 1 AAA domain DUF659 PF04937.10 gi|156937836|ref|YP_001435632.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF 659) DUF258 PF03193.11 gi|156937836|ref|YP_001435632.1| - 0.14 11.3 0.1 0.74 8.9 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|156937836|ref|YP_001435632.1| - 0.2 10.8 3.3 0.23 10.6 0.0 2.5 3 1 0 3 3 3 0 Chromatin associated protein KTI12 DUF3086 PF11285.3 gi|156937838|ref|YP_001435634.1| - 0.0026 16.6 0.3 0.0033 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3086) DUF972 PF06156.8 gi|156937838|ref|YP_001435634.1| - 0.026 14.8 2.0 0.24 11.7 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Viral_P18 PF04521.8 gi|156937838|ref|YP_001435634.1| - 0.04 13.3 1.1 0.069 12.5 0.8 1.4 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein ATP-synt_D PF01813.12 gi|156937838|ref|YP_001435634.1| - 0.11 12.0 3.6 0.17 11.4 2.5 1.5 1 1 0 1 1 1 0 ATP synthase subunit D Prefoldin PF02996.12 gi|156937838|ref|YP_001435634.1| - 0.15 11.7 1.8 0.29 10.8 0.1 1.9 2 0 0 2 2 2 0 Prefoldin subunit AKNA PF12443.3 gi|156937838|ref|YP_001435634.1| - 0.17 11.8 1.7 0.29 11.1 1.2 1.4 1 0 0 1 1 1 0 AT-hook-containing transcription factor GHMP_kinases_C PF08544.8 gi|156937838|ref|YP_001435634.1| - 0.3 11.2 1.4 6.9 6.9 0.2 2.3 2 0 0 2 2 2 0 GHMP kinases C terminal DivIC PF04977.10 gi|156937838|ref|YP_001435634.1| - 0.35 10.3 4.9 0.093 12.2 1.3 1.6 2 0 0 2 2 2 0 Septum formation initiator Lge1 PF11488.3 gi|156937838|ref|YP_001435634.1| - 0.54 10.4 2.7 0.49 10.6 0.7 1.7 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 IncA PF04156.9 gi|156937838|ref|YP_001435634.1| - 0.67 9.5 5.2 0.63 9.6 1.2 1.9 2 0 0 2 2 2 0 IncA protein DED PF01335.16 gi|156937838|ref|YP_001435634.1| - 0.82 9.8 6.3 5 7.3 0.2 2.1 2 0 0 2 2 2 0 Death effector domain UPF0184 PF03670.8 gi|156937838|ref|YP_001435634.1| - 1.8 8.7 6.6 0.39 10.9 1.0 2.1 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) DUF217 PF02697.9 gi|156937838|ref|YP_001435634.1| - 2.4 8.4 8.3 11 6.2 0.3 2.3 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 TYW3 PF02676.9 gi|156937839|ref|YP_001435635.1| - 1.5e-46 158.1 0.0 1.8e-46 157.9 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 Big_3_4 PF13754.1 gi|156937840|ref|YP_001435636.1| - 0.11 12.7 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Reeler PF02014.11 gi|156937841|ref|YP_001435637.1| - 0.017 15.3 2.7 0.084 13.1 0.3 2.4 2 1 0 2 2 2 0 Reeler domain TP6A_N PF04406.9 gi|156937842|ref|YP_001435638.1| - 8.9e-23 79.7 0.1 1.6e-22 78.8 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|156937842|ref|YP_001435638.1| - 0.00025 20.9 0.0 0.00044 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) RRXRR PF14239.1 gi|156937842|ref|YP_001435638.1| - 0.077 12.4 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 RRXRR protein Methyltrn_RNA_2 PF04013.7 gi|156937843|ref|YP_001435639.1| - 0.00025 20.6 0.0 0.00039 20.0 0.0 1.4 2 0 0 2 2 2 1 Putative SAM-dependent RNA methyltransferase Peptidase_M3_N PF08439.5 gi|156937844|ref|YP_001435640.1| - 0.084 12.9 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Oligopeptidase F DUF1732 PF08340.6 gi|156937844|ref|YP_001435640.1| - 0.11 12.2 0.4 0.37 10.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1732) Carb_kinase PF01256.12 gi|156937845|ref|YP_001435641.1| - 2.5e-46 157.9 0.0 3.9e-46 157.3 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|156937845|ref|YP_001435641.1| - 3.5e-40 137.3 0.0 1.1e-39 135.7 0.0 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|156937845|ref|YP_001435641.1| - 5.6e-07 28.9 0.1 1.9e-06 27.2 0.0 1.7 2 0 0 2 2 2 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|156937845|ref|YP_001435641.1| - 2.3e-06 26.9 0.0 3.5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Peptidase_C97 PF05903.9 gi|156937846|ref|YP_001435642.1| - 0.06 13.1 0.0 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 PPPDE putative peptidase domain 3HCDH_N PF02737.13 gi|156937847|ref|YP_001435643.1| - 7.2e-67 224.5 2.0 1.3e-66 223.7 1.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|156937847|ref|YP_001435643.1| - 3e-59 200.0 0.1 3e-59 200.0 0.0 2.1 3 0 0 3 3 3 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|156937847|ref|YP_001435643.1| - 7.1e-53 177.0 0.9 5.7e-30 103.5 0.1 3.1 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|156937847|ref|YP_001435643.1| - 7.8e-06 25.8 0.3 8e-05 22.5 0.2 2.4 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|156937847|ref|YP_001435643.1| - 1.2e-05 25.0 0.1 7.8e-05 22.4 0.1 2.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|156937847|ref|YP_001435643.1| - 0.00025 21.4 0.5 0.0017 18.7 0.2 2.6 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|156937847|ref|YP_001435643.1| - 0.00033 19.7 0.1 0.0012 17.9 0.0 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase AlaDh_PNT_C PF01262.16 gi|156937847|ref|YP_001435643.1| - 0.0077 15.8 0.1 0.016 14.7 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.12 gi|156937847|ref|YP_001435643.1| - 0.015 15.7 0.3 0.097 13.1 0.2 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DFP PF04127.10 gi|156937847|ref|YP_001435643.1| - 0.029 13.9 0.2 1.6 8.2 0.0 2.5 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Pyr_redox_2 PF07992.9 gi|156937847|ref|YP_001435643.1| - 0.03 14.1 0.0 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|156937847|ref|YP_001435643.1| - 0.068 13.4 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|156937847|ref|YP_001435643.1| - 0.073 12.2 0.1 0.17 11.0 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SBP_bac_11 PF13531.1 gi|156937847|ref|YP_001435643.1| - 0.081 12.5 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein ECH_C PF13766.1 gi|156937847|ref|YP_001435643.1| - 0.081 13.0 0.1 0.21 11.7 0.1 1.7 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region DAO PF01266.19 gi|156937847|ref|YP_001435643.1| - 0.096 11.5 0.3 0.18 10.6 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Methyltransf_18 PF12847.2 gi|156937847|ref|YP_001435643.1| - 0.096 13.2 0.0 0.47 11.0 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain XdhC_C PF13478.1 gi|156937847|ref|YP_001435643.1| - 0.097 12.9 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain FAD_binding_3 PF01494.14 gi|156937847|ref|YP_001435643.1| - 0.13 11.2 0.1 0.23 10.4 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.16 gi|156937847|ref|YP_001435643.1| - 1.1 9.0 4.5 16 5.3 2.5 2.8 2 1 0 2 2 1 0 ThiF family RrnaAD PF00398.15 gi|156937848|ref|YP_001435644.1| - 2.1e-39 135.1 0.0 2.6e-39 134.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.11 gi|156937848|ref|YP_001435644.1| - 0.00019 21.0 0.0 0.0088 15.6 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|156937848|ref|YP_001435644.1| - 0.00051 19.1 0.0 0.00078 18.5 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.2 gi|156937848|ref|YP_001435644.1| - 0.00058 20.4 0.0 0.00093 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156937848|ref|YP_001435644.1| - 0.00091 19.2 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937848|ref|YP_001435644.1| - 0.0014 18.1 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|156937848|ref|YP_001435644.1| - 0.002 17.6 0.0 0.0028 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.10 gi|156937848|ref|YP_001435644.1| - 0.012 14.8 0.1 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G MTS PF05175.9 gi|156937848|ref|YP_001435644.1| - 0.094 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF655 PF04919.7 gi|156937849|ref|YP_001435645.1| - 9e-57 191.6 0.4 1e-56 191.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|156937849|ref|YP_001435645.1| - 1.8e-06 27.9 0.0 3.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|156937849|ref|YP_001435645.1| - 4.4e-06 26.5 0.0 1.3e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|156937849|ref|YP_001435645.1| - 0.0014 18.2 0.4 0.01 15.5 0.1 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|156937849|ref|YP_001435645.1| - 0.053 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain Sec61_beta PF03911.11 gi|156937850|ref|YP_001435646.1| - 3.2e-13 49.2 0.3 3.7e-13 49.0 0.2 1.1 1 0 0 1 1 1 1 Sec61beta family ERCC4 PF02732.10 gi|156937851|ref|YP_001435647.1| - 8.1e-24 84.0 0.0 1.1e-23 83.5 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|156937851|ref|YP_001435647.1| - 6.9e-11 41.8 0.0 2.8e-10 39.9 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|156937851|ref|YP_001435647.1| - 2.8e-10 40.2 0.0 6.2e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|156937851|ref|YP_001435647.1| - 5.9e-08 31.9 0.2 0.008 15.8 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|156937851|ref|YP_001435647.1| - 2.4e-05 24.1 0.0 0.0085 16.0 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|156937851|ref|YP_001435647.1| - 0.00059 20.0 0.0 0.0017 18.5 0.0 1.8 1 1 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold TrmB PF01978.14 gi|156937851|ref|YP_001435647.1| - 0.015 14.9 0.0 0.16 11.6 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB ChaC PF04752.7 gi|156937851|ref|YP_001435647.1| - 0.019 14.9 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 ChaC-like protein IMS_HHH PF11798.3 gi|156937851|ref|YP_001435647.1| - 0.02 14.9 0.1 0.13 12.3 0.0 2.4 2 0 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.1 gi|156937851|ref|YP_001435647.1| - 0.059 13.5 0.0 1.9 8.7 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix domain FANCI_S4 PF14678.1 gi|156937852|ref|YP_001435648.1| - 0.065 12.3 0.0 0.075 12.1 0.0 1.1 1 0 0 1 1 1 0 FANCI solenoid 4 DUF2540 PF10802.3 gi|156937852|ref|YP_001435648.1| - 0.13 11.9 0.3 0.38 10.4 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2540) UVR PF02151.14 gi|156937852|ref|YP_001435648.1| - 0.22 11.0 3.5 4.2 7.0 0.1 2.5 2 0 0 2 2 2 0 UvrB/uvrC motif Iso_dh PF00180.15 gi|156937853|ref|YP_001435649.1| - 1.9e-106 355.9 0.0 2.2e-106 355.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase NTPase_1 PF03266.10 gi|156937855|ref|YP_001435651.1| - 1.4e-47 161.5 0.0 1.6e-47 161.3 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|156937855|ref|YP_001435651.1| - 2.7e-08 34.6 0.1 5.3e-08 33.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|156937855|ref|YP_001435651.1| - 7.6e-06 26.1 0.0 1.4e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|156937855|ref|YP_001435651.1| - 1.1e-05 24.4 0.3 1.8e-05 23.7 0.2 1.4 1 1 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|156937855|ref|YP_001435651.1| - 1.3e-05 24.9 0.0 2.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|156937855|ref|YP_001435651.1| - 2.1e-05 24.6 0.3 5.3e-05 23.2 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|156937855|ref|YP_001435651.1| - 2.7e-05 24.3 0.1 0.00011 22.3 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|156937855|ref|YP_001435651.1| - 5.2e-05 22.8 0.0 5.9e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_18 PF13238.1 gi|156937855|ref|YP_001435651.1| - 6.1e-05 23.3 0.2 0.00014 22.1 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|156937855|ref|YP_001435651.1| - 0.00043 19.9 0.1 0.00083 19.0 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|156937855|ref|YP_001435651.1| - 0.00049 19.7 0.1 0.00092 18.8 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|156937855|ref|YP_001435651.1| - 0.00062 19.6 0.1 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|156937855|ref|YP_001435651.1| - 0.00082 19.0 0.0 0.002 17.8 0.0 1.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|156937855|ref|YP_001435651.1| - 0.0014 18.2 0.0 0.003 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|156937855|ref|YP_001435651.1| - 0.0017 17.8 0.0 0.0051 16.2 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF2478 PF10649.4 gi|156937855|ref|YP_001435651.1| - 0.0023 17.2 0.0 0.0035 16.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) KTI12 PF08433.5 gi|156937855|ref|YP_001435651.1| - 0.0025 17.0 0.0 0.0043 16.3 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|156937855|ref|YP_001435651.1| - 0.0027 18.0 0.2 0.0094 16.2 0.0 1.8 2 0 0 2 2 2 1 ABC transporter Thymidylate_kin PF02223.12 gi|156937855|ref|YP_001435651.1| - 0.0044 16.4 0.0 0.0074 15.6 0.0 1.4 1 0 0 1 1 1 1 Thymidylate kinase Zeta_toxin PF06414.7 gi|156937855|ref|YP_001435651.1| - 0.0048 16.0 0.1 0.0082 15.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin cobW PF02492.14 gi|156937855|ref|YP_001435651.1| - 0.0049 16.3 0.0 0.0089 15.4 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|156937855|ref|YP_001435651.1| - 0.0054 16.7 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|156937855|ref|YP_001435651.1| - 0.011 14.8 0.0 0.025 13.6 0.0 1.5 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|156937855|ref|YP_001435651.1| - 0.011 15.1 0.1 0.015 14.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|156937855|ref|YP_001435651.1| - 0.012 15.5 0.0 0.02 14.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|156937855|ref|YP_001435651.1| - 0.015 15.4 0.0 0.038 14.1 0.0 1.6 2 0 0 2 2 1 0 RNA helicase Viral_helicase1 PF01443.13 gi|156937855|ref|YP_001435651.1| - 0.02 14.3 0.3 0.074 12.5 0.1 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.18 gi|156937855|ref|YP_001435651.1| - 0.024 14.6 0.0 0.029 14.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|156937855|ref|YP_001435651.1| - 0.025 13.5 0.0 0.096 11.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|156937855|ref|YP_001435651.1| - 0.031 13.1 0.1 0.059 12.2 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.13 gi|156937855|ref|YP_001435651.1| - 0.045 13.3 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.1 gi|156937855|ref|YP_001435651.1| - 0.048 13.1 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Nitro_FeMo-Co PF02579.12 gi|156937855|ref|YP_001435651.1| - 0.049 13.7 0.0 0.62 10.1 0.0 2.5 2 1 1 3 3 2 0 Dinitrogenase iron-molybdenum cofactor AAA_5 PF07728.9 gi|156937855|ref|YP_001435651.1| - 0.079 12.6 0.3 0.25 11.0 0.1 1.8 2 1 1 3 3 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|156937855|ref|YP_001435651.1| - 0.081 12.4 0.0 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|156937855|ref|YP_001435651.1| - 0.11 12.2 0.1 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|156937855|ref|YP_001435651.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ADK PF00406.17 gi|156937855|ref|YP_001435651.1| - 0.12 12.2 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 Adenylate kinase ATP_bind_1 PF03029.12 gi|156937855|ref|YP_001435651.1| - 0.13 11.8 0.1 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF815 PF05673.8 gi|156937855|ref|YP_001435651.1| - 0.16 10.8 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) SRP54 PF00448.17 gi|156937855|ref|YP_001435651.1| - 0.17 11.2 0.0 0.51 9.7 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF433 PF04255.9 gi|156937856|ref|YP_001435652.1| - 1.8e-28 97.6 0.0 2.2e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Mut7-C PF01927.11 gi|156937857|ref|YP_001435653.1| - 3.9e-05 23.6 0.0 4.6e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF2276 PF10040.4 gi|156937858|ref|YP_001435654.1| - 2.3e-14 53.6 0.0 3.5e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Cas_Cas1 PF01867.11 gi|156937861|ref|YP_001435657.1| - 2.7e-38 131.6 0.0 3.4e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 RdRP_4 PF02123.11 gi|156937861|ref|YP_001435657.1| - 0.13 10.9 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Viral RNA-directed RNA-polymerase NPV_P10 PF05531.7 gi|156937862|ref|YP_001435658.1| - 0.11 12.7 0.2 0.22 11.8 0.1 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein EmrE PF13536.1 gi|156937862|ref|YP_001435658.1| - 2.3 8.4 10.2 4.5 7.4 7.1 1.4 1 0 0 1 1 1 0 Multidrug resistance efflux transporter Fer4_21 PF14697.1 gi|156937863|ref|YP_001435659.1| - 1.2e-12 47.4 6.7 6.4e-07 29.1 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156937863|ref|YP_001435659.1| - 1.7e-10 40.0 15.5 2.4e-05 23.7 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156937863|ref|YP_001435659.1| - 3.4e-10 39.5 6.3 9.9e-05 22.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156937863|ref|YP_001435659.1| - 2.9e-09 37.1 8.4 6.8e-09 35.9 5.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937863|ref|YP_001435659.1| - 1.2e-08 34.4 14.6 4e-05 23.2 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156937863|ref|YP_001435659.1| - 1.2e-08 35.1 2.9 1.7e-08 34.7 2.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156937863|ref|YP_001435659.1| - 1.3e-07 31.5 4.9 1.8e-07 31.0 3.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937863|ref|YP_001435659.1| - 8.4e-07 28.5 11.5 0.0002 21.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156937863|ref|YP_001435659.1| - 2.1e-06 28.3 5.7 0.0034 18.0 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|156937863|ref|YP_001435659.1| - 5.9e-06 26.7 7.7 0.013 16.0 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|156937863|ref|YP_001435659.1| - 1.1e-05 25.7 5.7 0.018 15.4 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156937863|ref|YP_001435659.1| - 2.4e-05 24.5 22.2 0.00025 21.2 8.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156937863|ref|YP_001435659.1| - 5.5e-05 23.1 9.7 0.0037 17.4 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|156937863|ref|YP_001435659.1| - 0.00015 22.1 9.0 0.014 15.7 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|156937863|ref|YP_001435659.1| - 0.0018 18.6 14.2 0.024 15.1 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|156937863|ref|YP_001435659.1| - 0.21 11.4 3.9 0.4 10.5 2.7 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.13 gi|156937864|ref|YP_001435660.1| - 5.1e-42 143.7 0.2 5.9e-42 143.5 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|156937865|ref|YP_001435661.1| - 3.4e-28 98.1 0.0 5.1e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACP_syn_III_C PF08541.5 gi|156937865|ref|YP_001435661.1| - 0.085 12.8 0.1 0.27 11.2 0.0 1.9 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal POR_N PF01855.14 gi|156937866|ref|YP_001435662.1| - 9.6e-66 221.5 1.6 1.2e-65 221.2 1.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|156937866|ref|YP_001435662.1| - 1.9e-08 34.2 0.0 3.3e-07 30.2 0.0 2.4 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|156937866|ref|YP_001435662.1| - 9.2e-07 28.5 0.6 1.5e-06 27.7 0.4 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DeoC PF01791.4 gi|156937867|ref|YP_001435663.1| - 9.9e-29 100.2 0.1 1.2e-28 100.0 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF4253 PF14062.1 gi|156937867|ref|YP_001435663.1| - 0.014 14.9 0.0 0.034 13.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4253) FMN_dh PF01070.13 gi|156937867|ref|YP_001435663.1| - 0.025 13.4 0.1 0.72 8.6 0.0 2.0 1 1 1 2 2 2 0 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|156937867|ref|YP_001435663.1| - 0.06 12.2 0.1 0.12 11.2 0.1 1.5 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase vATP-synt_E PF01991.13 gi|156937868|ref|YP_001435664.1| - 9.3e-19 67.4 19.7 1.2e-18 67.1 13.7 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Peptidase_M3_N PF08439.5 gi|156937868|ref|YP_001435664.1| - 0.00047 20.1 6.2 0.11 12.6 0.6 2.8 2 0 0 2 2 2 2 Oligopeptidase F DUF885 PF05960.6 gi|156937868|ref|YP_001435664.1| - 0.0028 16.8 3.2 0.0031 16.7 2.2 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) Amidase PF01425.16 gi|156937868|ref|YP_001435664.1| - 0.0077 15.1 2.0 0.0093 14.8 1.4 1.2 1 0 0 1 1 1 1 Amidase ATP-synt_B PF00430.13 gi|156937868|ref|YP_001435664.1| - 0.01 15.6 9.5 0.01 15.6 6.6 2.2 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF29 PF01724.11 gi|156937868|ref|YP_001435664.1| - 0.012 15.4 5.9 1.1 9.0 0.3 2.4 1 1 1 2 2 2 0 Domain of unknown function DUF29 Exonuc_VII_L PF02601.10 gi|156937868|ref|YP_001435664.1| - 0.041 13.0 3.9 0.049 12.8 2.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF1800 PF08811.6 gi|156937868|ref|YP_001435664.1| - 0.077 11.9 1.3 0.096 11.5 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1800) DUF4246 PF14033.1 gi|156937868|ref|YP_001435664.1| - 0.094 11.3 5.2 0.12 10.9 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4246) YbaB_DNA_bd PF02575.11 gi|156937868|ref|YP_001435664.1| - 0.1 12.4 9.8 0.21 11.5 0.4 2.6 1 1 0 2 2 2 0 YbaB/EbfC DNA-binding family KfrA_N PF11740.3 gi|156937868|ref|YP_001435664.1| - 0.15 12.5 12.6 1.4 9.3 1.2 2.3 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term DUF1399 PF07173.7 gi|156937868|ref|YP_001435664.1| - 0.41 10.9 2.6 0.65 10.2 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1399) DUF4200 PF13863.1 gi|156937868|ref|YP_001435664.1| - 0.78 9.6 18.1 1.9 8.4 12.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DUF2317 PF10079.4 gi|156937868|ref|YP_001435664.1| - 1.2 7.6 10.4 1.6 7.2 7.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) HK97-gp10_like PF04883.7 gi|156937868|ref|YP_001435664.1| - 3.1 8.8 13.8 11 6.9 1.3 3.2 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component RRF PF01765.14 gi|156937868|ref|YP_001435664.1| - 3.7 6.9 15.7 2.2 7.7 1.5 2.5 2 0 0 2 2 2 0 Ribosome recycling factor Peptidase_M41 PF01434.13 gi|156937868|ref|YP_001435664.1| - 9.1 5.6 13.5 2.2 7.6 1.7 2.9 1 1 2 3 3 3 0 Peptidase family M41 ATP-synt_F PF01990.12 gi|156937869|ref|YP_001435665.1| - 4.7e-18 65.3 0.1 5.2e-18 65.2 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit CobU PF02283.11 gi|156937869|ref|YP_001435665.1| - 0.033 13.6 0.0 0.038 13.4 0.0 1.1 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Spore_YhcN_YlaJ PF09580.5 gi|156937869|ref|YP_001435665.1| - 1.6 8.8 3.5 5.5 7.0 0.6 2.0 1 1 1 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) SNARE_assoc PF09335.6 gi|156937871|ref|YP_001435667.1| - 2.4e-08 34.2 6.4 2.4e-08 34.2 4.5 2.5 2 1 1 3 3 3 1 SNARE associated Golgi protein Sm_multidrug_ex PF06695.6 gi|156937871|ref|YP_001435667.1| - 0.82 9.8 7.0 15 5.8 1.0 3.3 1 1 2 3 3 3 0 Putative small multi-drug export protein UPF0016 PF01169.14 gi|156937871|ref|YP_001435667.1| - 1.7 8.8 8.9 0.68 10.1 0.2 3.3 2 2 0 3 3 3 0 Uncharacterized protein family UPF0016 ABC2_membrane_3 PF12698.2 gi|156937872|ref|YP_001435668.1| - 7.5e-27 94.2 14.6 8.6e-27 94.0 10.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|156937872|ref|YP_001435668.1| - 1e-23 83.5 24.5 2.4e-23 82.3 17.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|156937872|ref|YP_001435668.1| - 1.9e-12 46.8 0.0 2.7e-12 46.3 0.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|156937872|ref|YP_001435668.1| - 0.019 14.2 11.4 0.0054 16.0 4.4 2.6 2 1 0 2 2 2 0 ABC-2 family transporter protein FtsX PF02687.16 gi|156937872|ref|YP_001435668.1| - 3.3 7.5 15.6 0.019 14.7 3.9 2.4 3 0 0 3 3 3 0 FtsX-like permease family ABC_tran PF00005.22 gi|156937873|ref|YP_001435669.1| - 5.3e-32 110.9 0.0 7e-32 110.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156937873|ref|YP_001435669.1| - 4.6e-13 49.7 0.1 1.4e-10 41.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|156937873|ref|YP_001435669.1| - 4.3e-05 23.9 0.6 7.2e-05 23.2 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|156937873|ref|YP_001435669.1| - 0.0018 17.7 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|156937873|ref|YP_001435669.1| - 0.0022 17.1 0.0 0.9 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|156937873|ref|YP_001435669.1| - 0.023 13.9 0.0 5.6 6.1 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|156937873|ref|YP_001435669.1| - 0.029 14.0 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|156937873|ref|YP_001435669.1| - 0.033 13.7 0.0 0.087 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|156937873|ref|YP_001435669.1| - 0.045 13.7 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|156937873|ref|YP_001435669.1| - 0.1 12.3 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|156937873|ref|YP_001435669.1| - 0.12 11.7 0.1 0.34 10.3 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Radical_SAM PF04055.16 gi|156937874|ref|YP_001435670.1| - 6.6e-17 62.1 0.1 9.9e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily AP_endonuc_2 PF01261.19 gi|156937874|ref|YP_001435670.1| - 0.0043 16.3 0.1 0.0095 15.2 0.0 1.6 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel TrmB PF01978.14 gi|156937874|ref|YP_001435670.1| - 0.01 15.4 0.1 0.064 12.9 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Aconitase PF00330.15 gi|156937875|ref|YP_001435671.1| - 8e-85 285.0 0.8 6.1e-57 193.1 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|156937875|ref|YP_001435671.1| - 6.7e-06 24.9 0.0 1.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Topo-VIb_trans PF09239.6 gi|156937878|ref|YP_001435674.1| - 1e-65 220.1 0.1 2.1e-65 219.1 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|156937878|ref|YP_001435674.1| - 3.5e-13 49.2 0.1 1e-12 47.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|156937878|ref|YP_001435674.1| - 8.2e-13 48.1 0.1 1.6e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|156937878|ref|YP_001435674.1| - 2.1e-06 26.5 0.1 5.3e-06 25.2 0.1 1.6 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|156937878|ref|YP_001435674.1| - 0.00026 21.3 0.2 0.0036 17.7 0.0 2.6 2 0 0 2 2 2 1 Ribosomal protein S13/S18 HCaRG PF07258.9 gi|156937878|ref|YP_001435674.1| - 0.078 12.5 0.1 0.3 10.5 0.0 2.0 2 0 0 2 2 2 0 HCaRG protein SHMT PF00464.14 gi|156937879|ref|YP_001435675.1| - 1.3e-67 227.8 0.3 1.6e-67 227.6 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|156937879|ref|YP_001435675.1| - 4.3e-12 45.7 0.0 5.5e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|156937879|ref|YP_001435675.1| - 1e-06 27.7 0.1 1.7e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|156937879|ref|YP_001435675.1| - 6.2e-06 25.4 0.1 3e-05 23.2 0.1 2.0 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|156937879|ref|YP_001435675.1| - 7.2e-06 25.1 0.0 1.4e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II SelA PF03841.8 gi|156937879|ref|YP_001435675.1| - 0.0021 16.8 0.0 0.0041 15.9 0.0 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|156937879|ref|YP_001435675.1| - 0.028 12.7 0.0 0.045 12.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Cytochrom_B562 PF07361.6 gi|156937879|ref|YP_001435675.1| - 0.037 14.4 0.1 0.12 12.7 0.1 1.9 1 0 0 1 1 1 0 Cytochrome b562 AP_endonuc_2 PF01261.19 gi|156937880|ref|YP_001435676.1| - 2.6e-22 79.1 0.2 4.5e-22 78.3 0.1 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|156937880|ref|YP_001435676.1| - 0.0002 20.4 0.1 0.0005 19.1 0.0 1.8 1 1 0 1 1 1 1 UV-endonuclease UvdE GHL6 PF14871.1 gi|156937880|ref|YP_001435676.1| - 0.048 13.6 0.0 0.56 10.2 0.0 2.3 2 1 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 RuBisCO_small PF00101.15 gi|156937880|ref|YP_001435676.1| - 0.059 13.2 0.7 1.2 9.0 0.0 2.6 3 0 0 3 3 3 0 Ribulose bisphosphate carboxylase, small chain Ribosomal_L35Ae PF01247.13 gi|156937881|ref|YP_001435677.1| - 2.2e-18 65.7 0.2 4.2e-18 64.9 0.2 1.4 1 1 0 1 1 1 1 Ribosomal protein L35Ae Cren7 PF11520.3 gi|156937881|ref|YP_001435677.1| - 0.0011 18.5 0.3 0.0018 17.8 0.2 1.4 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF1330 PF07045.6 gi|156937881|ref|YP_001435677.1| - 0.096 12.5 0.1 0.19 11.6 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1330) CBS PF00571.23 gi|156937882|ref|YP_001435678.1| - 1.5e-34 117.4 8.9 6.8e-17 60.9 0.4 2.1 2 0 0 2 2 2 2 CBS domain KR PF08659.5 gi|156937882|ref|YP_001435678.1| - 0.0071 16.0 0.4 0.0085 15.7 0.3 1.0 1 0 0 1 1 1 1 KR domain DisA-linker PF10635.4 gi|156937882|ref|YP_001435678.1| - 0.36 10.3 2.7 0.42 10.1 0.3 2.0 1 1 1 2 2 2 0 DisA bacterial checkpoint controller linker region Mem_trans PF03547.13 gi|156937883|ref|YP_001435679.1| - 4.9e-09 34.9 6.6 2.3e-05 22.8 1.5 2.2 1 1 1 2 2 2 2 Membrane transport protein PDDEXK_1 PF12705.2 gi|156937884|ref|YP_001435680.1| - 0.004 16.5 1.7 0.027 13.8 1.2 2.2 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Zn_Tnp_IS1595 PF12760.2 gi|156937884|ref|YP_001435680.1| - 0.045 13.5 0.7 0.083 12.7 0.5 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TPP_enzyme_N PF02776.13 gi|156937885|ref|YP_001435681.1| - 4.4e-51 172.7 0.2 9.1e-51 171.7 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|156937885|ref|YP_001435681.1| - 1.1e-45 154.7 0.1 2.4e-45 153.6 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|156937885|ref|YP_001435681.1| - 2.7e-44 150.4 0.1 1.8e-43 147.7 0.0 2.2 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACT_5 PF13710.1 gi|156937886|ref|YP_001435682.1| - 4.7e-07 29.5 0.0 6.5e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 ACT domain Myosin_HC-like PF07058.6 gi|156937886|ref|YP_001435682.1| - 0.05 12.6 1.0 0.059 12.4 0.7 1.1 1 0 0 1 1 1 0 Myosin II heavy chain-like DUF4083 PF13314.1 gi|156937886|ref|YP_001435682.1| - 0.1 12.4 0.3 0.17 11.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) HIT PF01230.18 gi|156937887|ref|YP_001435683.1| - 1.9e-29 102.0 0.3 2.8e-29 101.5 0.0 1.4 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|156937887|ref|YP_001435683.1| - 2.9e-16 59.7 0.0 3.7e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|156937887|ref|YP_001435683.1| - 0.013 15.1 0.1 0.018 14.6 0.1 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 PALP PF00291.20 gi|156937888|ref|YP_001435684.1| - 5.1e-39 134.3 0.0 6e-39 134.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Molybdopterin PF00384.17 gi|156937889|ref|YP_001435685.1| - 3.3e-06 26.0 0.0 0.00014 20.7 0.0 2.3 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|156937889|ref|YP_001435685.1| - 0.019 14.7 0.0 0.044 13.5 0.0 1.6 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|156937889|ref|YP_001435685.1| - 0.056 13.2 3.4 0.14 11.9 1.2 2.3 1 1 1 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain Cys_Met_Meta_PP PF01053.15 gi|156937890|ref|YP_001435686.1| - 5.6e-123 410.0 0.0 6.3e-123 409.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|156937890|ref|YP_001435686.1| - 3.6e-06 25.9 0.0 8.9e-06 24.6 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|156937890|ref|YP_001435686.1| - 3.6e-06 26.1 0.0 6.1e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|156937890|ref|YP_001435686.1| - 1.5e-05 24.1 0.8 8.3e-05 21.7 0.5 2.0 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family PNP_UDP_1 PF01048.15 gi|156937891|ref|YP_001435687.1| - 1.2e-53 181.4 0.0 1.4e-53 181.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Tropomyosin PF00261.15 gi|156937892|ref|YP_001435688.1| - 0.0015 17.6 8.3 0.0017 17.4 5.8 1.0 1 0 0 1 1 1 1 Tropomyosin Syntaxin-6_N PF09177.6 gi|156937892|ref|YP_001435688.1| - 0.0093 16.3 1.3 0.026 14.9 0.2 2.0 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Tmemb_cc2 PF10267.4 gi|156937892|ref|YP_001435688.1| - 0.014 13.9 5.6 0.016 13.8 3.9 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein WEMBL PF05701.6 gi|156937892|ref|YP_001435688.1| - 0.017 13.6 5.7 0.025 13.0 3.9 1.4 1 1 0 1 1 1 0 Weak chloroplast movement under blue light Innate_immun PF12782.2 gi|156937892|ref|YP_001435688.1| - 0.017 14.3 2.4 0.015 14.5 1.7 1.1 1 0 0 1 1 1 0 Invertebrate innate immunity transcript family Laminin_II PF06009.7 gi|156937892|ref|YP_001435688.1| - 0.018 14.8 0.4 0.028 14.1 0.3 1.4 1 0 0 1 1 1 0 Laminin Domain II NPV_P10 PF05531.7 gi|156937892|ref|YP_001435688.1| - 0.021 15.0 0.7 0.069 13.4 0.5 1.9 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein End3 PF12761.2 gi|156937892|ref|YP_001435688.1| - 0.026 14.1 3.6 0.031 13.9 2.5 1.1 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Atg14 PF10186.4 gi|156937892|ref|YP_001435688.1| - 0.039 12.8 4.6 0.041 12.8 3.2 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin PF02996.12 gi|156937892|ref|YP_001435688.1| - 0.098 12.3 0.2 0.098 12.3 0.1 2.4 2 1 1 3 3 3 0 Prefoldin subunit DUF948 PF06103.6 gi|156937892|ref|YP_001435688.1| - 0.12 12.2 0.2 0.22 11.4 0.1 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|156937892|ref|YP_001435688.1| - 0.19 11.9 2.1 0.77 9.9 1.4 1.9 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ORF6C PF10552.4 gi|156937892|ref|YP_001435688.1| - 0.23 11.2 0.1 0.23 11.2 0.1 1.7 2 1 0 2 2 2 0 ORF6C domain Prefoldin_2 PF01920.15 gi|156937892|ref|YP_001435688.1| - 0.29 10.8 9.7 0.21 11.3 0.2 2.6 2 1 1 3 3 3 0 Prefoldin subunit IncA PF04156.9 gi|156937892|ref|YP_001435688.1| - 0.34 10.4 5.4 0.39 10.2 3.8 1.1 1 0 0 1 1 1 0 IncA protein DASH_Dad3 PF08656.5 gi|156937892|ref|YP_001435688.1| - 0.59 9.8 2.7 7.1 6.4 1.9 2.7 1 1 0 1 1 1 0 DASH complex subunit Dad3 Zip PF02535.17 gi|156937892|ref|YP_001435688.1| - 0.63 8.9 5.8 0.78 8.6 4.0 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Nsp1_C PF05064.8 gi|156937892|ref|YP_001435688.1| - 0.64 9.6 3.0 1.2 8.8 0.7 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DivIC PF04977.10 gi|156937892|ref|YP_001435688.1| - 0.82 9.1 3.6 0.42 10.1 0.1 2.1 2 1 1 3 3 3 0 Septum formation initiator TPR_MLP1_2 PF07926.7 gi|156937892|ref|YP_001435688.1| - 0.92 9.2 6.4 1.9 8.2 4.5 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF904 PF06005.7 gi|156937892|ref|YP_001435688.1| - 3.6 7.9 6.8 0.82 10.0 1.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF904) Enkurin PF13864.1 gi|156937892|ref|YP_001435688.1| - 5.3 7.3 11.0 3e+02 1.7 7.6 2.7 1 1 0 1 1 1 0 Calmodulin-binding zf-ZPR1 PF03367.8 gi|156937893|ref|YP_001435689.1| - 2.1e-40 137.5 0.6 2.5e-40 137.2 0.4 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|156937893|ref|YP_001435689.1| - 0.00096 19.4 0.3 0.0021 18.3 0.2 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|156937893|ref|YP_001435689.1| - 0.0032 16.8 1.1 1.1 8.8 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|156937893|ref|YP_001435689.1| - 0.013 15.4 6.2 0.75 9.8 0.1 3.6 3 1 0 3 3 3 0 Zinc ribbon domain UPF0547 PF10571.4 gi|156937893|ref|YP_001435689.1| - 0.024 14.3 7.3 0.41 10.3 5.0 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|156937893|ref|YP_001435689.1| - 0.03 13.7 5.0 0.76 9.2 0.1 3.0 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit PTH2 PF01981.11 gi|156937893|ref|YP_001435689.1| - 0.03 13.9 0.1 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Peptidyl-tRNA hydrolase PTH2 Zn_ribbon_recom PF13408.1 gi|156937893|ref|YP_001435689.1| - 0.054 13.7 0.7 11 6.3 0.0 3.0 3 0 0 3 3 3 0 Recombinase zinc beta ribbon domain RecR PF02132.10 gi|156937893|ref|YP_001435689.1| - 0.07 12.5 1.7 1.5 8.3 0.1 2.4 2 0 0 2 2 2 0 RecR protein zf-H2C2_2 PF13465.1 gi|156937893|ref|YP_001435689.1| - 0.071 13.4 2.7 7.6 7.0 0.0 2.7 3 0 0 3 3 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|156937893|ref|YP_001435689.1| - 0.081 12.1 4.8 0.98 8.7 3.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.2 gi|156937893|ref|YP_001435689.1| - 0.099 12.2 0.5 2 8.1 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.13 gi|156937893|ref|YP_001435689.1| - 0.14 11.7 0.5 21 4.8 0.0 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2225 PF09986.4 gi|156937893|ref|YP_001435689.1| - 0.75 9.2 3.6 12 5.3 1.8 2.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zinc_ribbon_4 PF13717.1 gi|156937893|ref|YP_001435689.1| - 2.4 7.9 5.8 16 5.3 0.1 3.1 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|156937893|ref|YP_001435689.1| - 4.1 7.0 6.2 18 5.0 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Ribosomal_L44 PF00935.14 gi|156937894|ref|YP_001435690.1| - 3.2e-27 94.3 6.8 3.2e-27 94.3 4.7 1.4 2 0 0 2 2 1 1 Ribosomal protein L44 zf-ISL3 PF14690.1 gi|156937894|ref|YP_001435690.1| - 0.00066 19.6 3.3 0.2 11.7 0.5 2.5 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2082 PF09855.4 gi|156937894|ref|YP_001435690.1| - 0.005 16.6 1.5 0.015 15.1 0.1 2.0 2 0 0 2 2 2 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DNA_RNApol_7kD PF03604.8 gi|156937894|ref|YP_001435690.1| - 0.0053 16.1 1.0 0.018 14.4 0.1 2.2 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|156937894|ref|YP_001435690.1| - 0.0087 15.8 2.4 0.022 14.5 1.7 1.6 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|156937894|ref|YP_001435690.1| - 0.01 15.0 1.2 2.8 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|156937894|ref|YP_001435690.1| - 0.015 15.2 2.1 0.19 11.6 1.5 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.6 gi|156937894|ref|YP_001435690.1| - 0.019 14.5 0.4 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|156937894|ref|YP_001435690.1| - 0.019 14.5 3.9 0.12 12.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|156937894|ref|YP_001435690.1| - 0.029 13.8 2.0 4.7 6.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|156937894|ref|YP_001435690.1| - 0.046 13.4 5.0 0.15 11.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|156937894|ref|YP_001435690.1| - 0.047 12.7 1.3 1.5 7.9 0.1 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-PHD-like PF15446.1 gi|156937894|ref|YP_001435690.1| - 0.061 12.6 0.5 0.07 12.4 0.3 1.1 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain Integrase_Zn PF02022.14 gi|156937894|ref|YP_001435690.1| - 0.063 12.7 0.1 0.063 12.7 0.1 1.6 2 0 0 2 2 1 0 Integrase Zinc binding domain TF_Zn_Ribbon PF08271.7 gi|156937894|ref|YP_001435690.1| - 0.064 12.5 1.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L33 PF00471.15 gi|156937894|ref|YP_001435690.1| - 0.087 13.0 0.6 0.087 13.0 0.4 2.8 2 1 1 3 3 3 0 Ribosomal protein L33 PyrI_C PF02748.10 gi|156937894|ref|YP_001435690.1| - 0.19 11.2 0.3 0.19 11.2 0.2 1.6 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain UPF0547 PF10571.4 gi|156937894|ref|YP_001435690.1| - 0.21 11.3 2.2 9.5 6.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3133 PF11331.3 gi|156937894|ref|YP_001435690.1| - 0.22 11.1 1.2 0.27 10.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Elf1 PF05129.8 gi|156937894|ref|YP_001435690.1| - 0.27 10.9 4.2 9.4 6.0 2.9 2.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2 PF00096.21 gi|156937894|ref|YP_001435690.1| - 0.3 11.5 5.3 3.2 8.2 1.1 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-FPG_IleRS PF06827.9 gi|156937894|ref|YP_001435690.1| - 0.31 10.7 0.1 0.31 10.7 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|156937894|ref|YP_001435690.1| - 0.88 9.4 4.6 19 5.1 0.0 2.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|156937894|ref|YP_001435690.1| - 1.4 8.4 6.5 2.4 7.7 2.4 2.4 2 1 0 2 2 2 0 InsA N-terminal domain Zn_ribbon_recom PF13408.1 gi|156937894|ref|YP_001435690.1| - 6.6 7.0 8.5 1.3 9.3 0.4 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Radical_SAM PF04055.16 gi|156937895|ref|YP_001435691.1| - 1.2e-18 67.8 0.0 2.6e-18 66.7 0.0 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|156937895|ref|YP_001435691.1| - 1.9e-06 27.9 0.0 3.7e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|156937895|ref|YP_001435691.1| - 3.8e-06 27.0 0.0 9.9e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain FAD_binding_3 PF01494.14 gi|156937896|ref|YP_001435692.1| - 2.2e-16 59.8 0.6 4.9e-06 25.8 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain FAD_binding_2 PF00890.19 gi|156937896|ref|YP_001435692.1| - 1.1e-10 40.9 3.6 3.2e-05 22.9 1.9 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|156937896|ref|YP_001435692.1| - 8.2e-10 38.1 9.1 1.6e-05 24.0 0.6 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|156937896|ref|YP_001435692.1| - 2.2e-09 36.9 2.4 5.9e-09 35.4 1.7 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|156937896|ref|YP_001435692.1| - 6.4e-08 31.6 0.2 0.0017 17.0 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|156937896|ref|YP_001435692.1| - 7.3e-08 32.5 0.1 9.1e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|156937896|ref|YP_001435692.1| - 1.6e-06 27.4 2.3 6.7e-06 25.3 0.1 2.5 3 0 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.1 gi|156937896|ref|YP_001435692.1| - 4.7e-06 26.5 0.2 4.7e-06 26.5 0.1 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|156937896|ref|YP_001435692.1| - 4.4e-05 23.6 0.3 0.00013 22.0 0.1 1.9 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|156937896|ref|YP_001435692.1| - 0.0002 20.4 0.0 0.00034 19.6 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|156937896|ref|YP_001435692.1| - 0.00034 20.9 2.0 0.00065 20.0 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|156937896|ref|YP_001435692.1| - 0.00041 19.3 0.3 0.00066 18.6 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|156937896|ref|YP_001435692.1| - 0.00053 18.5 1.0 0.001 17.6 0.5 1.6 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|156937896|ref|YP_001435692.1| - 0.0013 18.4 0.2 0.0027 17.3 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|156937896|ref|YP_001435692.1| - 0.0096 15.9 0.1 0.021 14.7 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain YjeF_N PF03853.10 gi|156937896|ref|YP_001435692.1| - 0.067 12.7 0.1 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 YjeF-related protein N-terminus NAD_binding_7 PF13241.1 gi|156937896|ref|YP_001435692.1| - 0.13 12.5 0.0 0.3 11.3 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|156937896|ref|YP_001435692.1| - 0.19 10.8 0.4 2.5 7.2 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GMC_oxred_N PF00732.14 gi|156937896|ref|YP_001435692.1| - 0.19 10.8 0.1 2.1 7.4 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase Glyco_trans_1_3 PF13528.1 gi|156937897|ref|YP_001435693.1| - 8.3e-09 35.0 0.0 5.5e-08 32.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 1 Alg14 PF08660.6 gi|156937897|ref|YP_001435693.1| - 8.9e-06 25.8 0.3 5.1e-05 23.3 0.1 2.2 2 1 0 2 2 2 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_tran_28_C PF04101.11 gi|156937897|ref|YP_001435693.1| - 0.00019 21.1 0.0 0.0004 20.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.1 gi|156937897|ref|YP_001435693.1| - 0.00055 20.1 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Asp_Glu_race PF01177.17 gi|156937897|ref|YP_001435693.1| - 0.0036 17.2 0.0 0.0094 15.8 0.0 1.6 2 0 0 2 2 2 1 Asp/Glu/Hydantoin racemase tRNA-synt_1c PF00749.16 gi|156937898|ref|YP_001435694.1| - 1e-75 254.3 0.0 1.5e-75 253.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|156937898|ref|YP_001435694.1| - 4.8e-18 65.4 0.0 1.2e-17 64.1 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Thioredoxin PF00085.15 gi|156937899|ref|YP_001435695.1| - 2.5e-09 36.7 0.1 2.7e-09 36.6 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|156937899|ref|YP_001435695.1| - 0.0022 17.9 0.6 0.14 12.1 0.2 2.6 2 1 0 2 2 2 1 Glutaredoxin KaiB PF07689.7 gi|156937899|ref|YP_001435695.1| - 0.065 12.7 0.1 0.096 12.1 0.1 1.3 1 0 0 1 1 1 0 KaiB domain Amidase PF01425.16 gi|156937899|ref|YP_001435695.1| - 0.072 11.9 0.1 0.081 11.7 0.1 1.2 1 0 0 1 1 1 0 Amidase Thioredoxin_8 PF13905.1 gi|156937899|ref|YP_001435695.1| - 0.094 12.8 0.1 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 Thioredoxin-like DUF3670 PF12419.3 gi|156937899|ref|YP_001435695.1| - 0.11 11.8 0.2 1.4 8.3 0.0 2.0 2 0 0 2 2 2 0 SNF2 Helicase protein Thioredoxin_3 PF13192.1 gi|156937899|ref|YP_001435695.1| - 0.2 11.4 1.5 0.46 10.3 0.8 1.8 1 1 1 2 2 2 0 Thioredoxin domain PPDK_N PF01326.14 gi|156937901|ref|YP_001435697.1| - 7.4e-110 367.0 0.2 1.2e-109 366.3 0.2 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|156937901|ref|YP_001435697.1| - 2.5e-81 272.7 0.0 4.1e-81 272.0 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|156937901|ref|YP_001435697.1| - 2.9e-30 103.6 0.2 1.7e-29 101.2 0.2 2.3 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain DnaJ PF00226.26 gi|156937901|ref|YP_001435697.1| - 0.086 12.5 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 DnaJ domain TrmB PF01978.14 gi|156937902|ref|YP_001435698.1| - 0.00028 20.5 0.2 0.00075 19.1 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB UBA PF00627.26 gi|156937902|ref|YP_001435698.1| - 0.0088 15.8 0.0 0.16 11.8 0.0 2.6 2 0 0 2 2 2 1 UBA/TS-N domain Penicillinase_R PF03965.11 gi|156937902|ref|YP_001435698.1| - 0.059 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor Thioredoxin_8 PF13905.1 gi|156937902|ref|YP_001435698.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like Methyltransf_11 PF08241.7 gi|156937903|ref|YP_001435699.1| - 1.6e-11 44.5 0.0 2.6e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|156937903|ref|YP_001435699.1| - 0.00076 18.6 0.0 0.0015 17.6 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|156937903|ref|YP_001435699.1| - 0.00083 19.1 0.0 0.0014 18.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937903|ref|YP_001435699.1| - 0.015 14.8 0.1 0.049 13.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|156937903|ref|YP_001435699.1| - 0.026 13.9 0.0 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|156937903|ref|YP_001435699.1| - 0.03 14.7 0.1 0.22 12.0 0.1 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|156937903|ref|YP_001435699.1| - 0.047 14.0 0.1 0.11 12.8 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF1512 PF07431.7 gi|156937904|ref|YP_001435700.1| - 1e-117 392.9 5.0 1.1e-117 392.7 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) KH_2 PF07650.12 gi|156937904|ref|YP_001435700.1| - 0.005 16.3 0.4 0.005 16.3 0.3 2.5 2 1 0 3 3 3 1 KH domain KH_5 PF13184.1 gi|156937904|ref|YP_001435700.1| - 0.017 14.8 0.1 0.046 13.5 0.1 1.7 1 0 0 1 1 1 0 NusA-like KH domain FTH PF01827.22 gi|156937904|ref|YP_001435700.1| - 0.042 13.4 0.1 0.081 12.5 0.1 1.4 1 0 0 1 1 1 0 FTH domain DUF883 PF05957.8 gi|156937904|ref|YP_001435700.1| - 0.067 13.5 0.6 0.58 10.5 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Anthrax-tox_M PF09156.5 gi|156937904|ref|YP_001435700.1| - 0.081 12.0 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 Anthrax toxin lethal factor, middle domain Helicase_RecD PF05127.9 gi|156937905|ref|YP_001435701.1| - 1.8e-39 135.2 0.0 3.1e-39 134.4 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|156937905|ref|YP_001435701.1| - 1.3e-16 60.5 0.0 4.1e-06 26.2 0.0 3.2 2 1 1 3 3 3 3 GNAT acetyltransferase 2 Acetyltransf_7 PF13508.1 gi|156937905|ref|YP_001435701.1| - 2.4e-05 24.4 0.0 7.8e-05 22.7 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|156937905|ref|YP_001435701.1| - 9.5e-05 22.3 0.0 0.00083 19.3 0.0 2.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family DUF1726 PF08351.6 gi|156937905|ref|YP_001435701.1| - 0.00048 19.7 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) AAA_30 PF13604.1 gi|156937905|ref|YP_001435701.1| - 0.00061 19.4 0.0 0.0023 17.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|156937905|ref|YP_001435701.1| - 0.00085 19.3 0.4 0.0043 17.0 0.0 2.3 3 0 0 3 3 3 1 AAA ATPase domain AAA_29 PF13555.1 gi|156937905|ref|YP_001435701.1| - 0.011 15.1 0.2 0.057 12.9 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain Acetyltransf_10 PF13673.1 gi|156937905|ref|YP_001435701.1| - 0.019 15.1 0.1 0.51 10.4 0.0 3.0 3 1 0 3 3 3 0 Acetyltransferase (GNAT) domain Arch_ATPase PF01637.13 gi|156937905|ref|YP_001435701.1| - 0.06 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase Acetyltransf_9 PF13527.1 gi|156937905|ref|YP_001435701.1| - 0.13 12.1 0.0 0.63 9.9 0.0 2.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DapB_C PF05173.9 gi|156937905|ref|YP_001435701.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, C-terminus DUF815 PF05673.8 gi|156937905|ref|YP_001435701.1| - 0.17 10.8 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|156937905|ref|YP_001435701.1| - 0.17 12.1 0.0 0.34 11.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter PhoH PF02562.11 gi|156937905|ref|YP_001435701.1| - 0.23 10.6 0.0 0.47 9.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein UPF0150 PF03681.10 gi|156937906|ref|YP_001435702.1| - 3.7e-06 26.4 0.5 6.7e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0150) HHA PF05321.6 gi|156937906|ref|YP_001435702.1| - 0.013 15.6 0.2 0.021 14.9 0.2 1.4 1 0 0 1 1 1 0 Haemolysin expression modulating protein DUF3209 PF11483.3 gi|156937906|ref|YP_001435702.1| - 0.055 13.8 0.9 0.065 13.5 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) Cep57_MT_bd PF06657.8 gi|156937906|ref|YP_001435702.1| - 0.094 12.6 0.1 0.17 11.8 0.1 1.5 1 1 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 Fijivirus_P9-2 PF06837.6 gi|156937906|ref|YP_001435702.1| - 0.12 11.4 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Fijivirus P9-2 protein Thioredoxin_3 PF13192.1 gi|156937909|ref|YP_001435705.1| - 0.67 9.8 2.7 0.69 9.7 0.5 2.2 2 1 0 2 2 2 0 Thioredoxin domain DUF970 PF06153.6 gi|156937910|ref|YP_001435706.1| - 0.046 13.6 0.1 0.12 12.3 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF970) CorA PF01544.13 gi|156937910|ref|YP_001435706.1| - 0.084 11.8 0.5 0.092 11.7 0.4 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SapB_1 PF05184.10 gi|156937910|ref|YP_001435706.1| - 0.15 11.9 1.4 0.24 11.2 0.3 1.9 2 0 0 2 2 2 0 Saposin-like type B, region 1 DUF4164 PF13747.1 gi|156937910|ref|YP_001435706.1| - 0.25 11.4 3.9 7.8 6.7 3.1 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) Trm56 PF01994.11 gi|156937911|ref|YP_001435707.1| - 7.6e-44 148.3 0.0 9.5e-44 148.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|156937912|ref|YP_001435708.1| - 8.1e-18 63.8 4.9 8.1e-18 63.8 3.4 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit TrmB PF01978.14 gi|156937912|ref|YP_001435708.1| - 5.5e-05 22.7 0.4 0.00015 21.4 0.3 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TF_Zn_Ribbon PF08271.7 gi|156937912|ref|YP_001435708.1| - 0.00062 19.0 2.4 0.0021 17.3 1.6 2.0 1 1 1 2 2 2 2 TFIIB zinc-binding GntR PF00392.16 gi|156937912|ref|YP_001435708.1| - 0.0014 18.0 1.5 0.0029 16.9 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|156937912|ref|YP_001435708.1| - 0.0016 18.2 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|156937912|ref|YP_001435708.1| - 0.0025 17.6 0.3 0.0043 16.8 0.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|156937912|ref|YP_001435708.1| - 0.0044 16.9 1.1 0.38 10.7 0.0 2.6 2 0 0 2 2 2 1 Zinc ribbon domain Replic_Relax PF13814.1 gi|156937912|ref|YP_001435708.1| - 0.0069 16.2 0.4 0.0089 15.8 0.3 1.3 1 0 0 1 1 1 1 Replication-relaxation zf-NADH-PPase PF09297.6 gi|156937912|ref|YP_001435708.1| - 0.0098 15.3 2.3 0.22 11.0 0.1 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-C2H2_6 PF13912.1 gi|156937912|ref|YP_001435708.1| - 0.01 15.7 2.7 0.17 11.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.14 gi|156937912|ref|YP_001435708.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DRP PF06044.7 gi|156937912|ref|YP_001435708.1| - 0.011 14.8 0.1 0.015 14.3 0.1 1.2 1 0 0 1 1 1 0 Dam-replacing family HTH_27 PF13463.1 gi|156937912|ref|YP_001435708.1| - 0.013 15.7 0.1 0.034 14.4 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain zf-IS66 PF13005.2 gi|156937912|ref|YP_001435708.1| - 0.014 15.3 0.7 14 5.7 0.0 3.3 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-C2H2_4 PF13894.1 gi|156937912|ref|YP_001435708.1| - 0.016 15.4 0.7 1.5 9.3 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|156937912|ref|YP_001435708.1| - 0.017 14.5 2.3 0.76 9.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|156937912|ref|YP_001435708.1| - 0.028 14.2 0.2 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 IBR domain Rrf2 PF02082.15 gi|156937912|ref|YP_001435708.1| - 0.03 14.4 1.2 0.22 11.6 0.0 2.7 3 1 0 3 3 3 0 Transcriptional regulator Elf1 PF05129.8 gi|156937912|ref|YP_001435708.1| - 0.035 13.7 1.2 2.9 7.6 0.0 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Borrelia_orfA PF02414.10 gi|156937912|ref|YP_001435708.1| - 0.044 12.8 3.4 0.03 13.4 0.5 1.7 2 0 0 2 2 2 0 Borrelia ORF-A zf-ribbon_3 PF13248.1 gi|156937912|ref|YP_001435708.1| - 0.045 12.9 6.9 0.51 9.6 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|156937912|ref|YP_001435708.1| - 0.045 13.6 3.0 0.86 9.5 2.1 2.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CSL PF05207.8 gi|156937912|ref|YP_001435708.1| - 0.049 13.1 1.3 0.8 9.2 0.0 2.4 1 1 1 2 2 2 0 CSL zinc finger zf-TFIIB PF13453.1 gi|156937912|ref|YP_001435708.1| - 0.056 12.6 1.0 3.8 6.7 0.0 2.9 3 0 0 3 3 2 0 Transcription factor zinc-finger Fe_dep_repress PF01325.14 gi|156937912|ref|YP_001435708.1| - 0.057 13.3 0.0 0.16 11.8 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain CpXC PF14353.1 gi|156937912|ref|YP_001435708.1| - 0.084 12.8 1.9 2.2 8.2 0.1 2.4 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|156937912|ref|YP_001435708.1| - 0.085 12.6 2.8 3.2 7.6 0.2 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF4393 PF14337.1 gi|156937912|ref|YP_001435708.1| - 0.1 12.0 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) OrfB_Zn_ribbon PF07282.6 gi|156937912|ref|YP_001435708.1| - 0.11 12.2 2.1 1.7 8.3 0.5 2.9 2 1 2 4 4 4 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.9 gi|156937912|ref|YP_001435708.1| - 0.11 12.1 1.3 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C4_Topoisom PF01396.14 gi|156937912|ref|YP_001435708.1| - 0.12 11.8 0.7 3.4 7.2 0.1 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger MarR_2 PF12802.2 gi|156937912|ref|YP_001435708.1| - 0.13 11.9 0.0 0.51 10.0 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF329 PF03884.9 gi|156937912|ref|YP_001435708.1| - 0.16 11.5 0.9 2.2 7.8 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Nudix_N_2 PF14803.1 gi|156937912|ref|YP_001435708.1| - 0.19 11.4 3.6 5 6.9 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF4187 PF13821.1 gi|156937912|ref|YP_001435708.1| - 0.23 11.1 4.2 0.26 10.9 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4187) zinc_ribbon_5 PF13719.1 gi|156937912|ref|YP_001435708.1| - 0.23 11.0 1.0 1.2 8.7 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain MarR PF01047.17 gi|156937912|ref|YP_001435708.1| - 0.37 10.5 0.0 0.37 10.5 0.0 2.1 3 0 0 3 3 2 0 MarR family Rubredoxin PF00301.15 gi|156937912|ref|YP_001435708.1| - 0.64 9.9 3.4 29 4.6 2.4 2.4 1 1 0 1 1 1 0 Rubredoxin zf-RING_3 PF14369.1 gi|156937912|ref|YP_001435708.1| - 0.79 9.7 3.6 13 5.9 0.1 2.3 1 1 1 2 2 2 0 zinc-finger Acetone_carb_G PF08882.6 gi|156937912|ref|YP_001435708.1| - 1 9.4 3.2 9.5 6.2 0.3 2.3 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-Di19 PF05605.7 gi|156937912|ref|YP_001435708.1| - 1.5 8.9 3.8 13 6.0 0.1 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Trm112p PF03966.11 gi|156937912|ref|YP_001435708.1| - 3.4 8.1 5.1 13 6.2 0.9 2.7 2 1 0 2 2 2 0 Trm112p-like protein DNA_ligase_ZBD PF03119.11 gi|156937912|ref|YP_001435708.1| - 3.9 7.2 9.6 1.3 8.7 0.4 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1610 PF07754.6 gi|156937912|ref|YP_001435708.1| - 8.3 6.6 11.3 2.2 8.4 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_methylase PF00145.12 gi|156937913|ref|YP_001435709.1| - 1e-50 172.7 0.0 2.8e-33 115.4 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|156937913|ref|YP_001435709.1| - 0.00048 20.1 0.1 0.0012 18.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|156937913|ref|YP_001435709.1| - 0.0052 16.3 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Hjc PF01870.13 gi|156937915|ref|YP_001435711.1| - 8.9e-21 73.3 0.0 1.2e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF3883 PF13020.1 gi|156937915|ref|YP_001435711.1| - 0.018 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) VRR_NUC PF08774.6 gi|156937915|ref|YP_001435711.1| - 0.045 13.7 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 VRR-NUC domain DUF790 PF05626.6 gi|156937915|ref|YP_001435711.1| - 0.087 11.3 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF790) eIF-5a PF01287.15 gi|156937916|ref|YP_001435712.1| - 1.3e-15 57.1 0.0 1.9e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|156937916|ref|YP_001435712.1| - 3.1e-07 30.1 0.1 1.5e-06 27.9 0.0 2.1 2 1 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|156937916|ref|YP_001435712.1| - 0.0007 19.2 0.2 0.0026 17.4 0.0 2.0 2 0 0 2 2 2 1 KOW motif EFP PF01132.15 gi|156937916|ref|YP_001435712.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain Cytochrom_D1 PF02239.11 gi|156937916|ref|YP_001435712.1| - 0.028 12.7 0.0 0.076 11.3 0.0 1.6 1 1 1 2 2 2 0 Cytochrome D1 heme domain Sipho_Gp37 PF14594.1 gi|156937916|ref|YP_001435712.1| - 0.14 11.3 0.0 0.5 9.5 0.0 1.8 1 1 1 2 2 2 0 Siphovirus ReqiPepy6 Gp37-like protein RNA_lig_T4_1 PF09511.5 gi|156937917|ref|YP_001435713.1| - 2e-21 76.4 0.0 3.1e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DUF2693 PF10902.3 gi|156937917|ref|YP_001435713.1| - 0.065 13.1 0.1 0.41 10.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2693) CorA PF01544.13 gi|156937917|ref|YP_001435713.1| - 0.098 11.6 0.1 0.21 10.5 0.0 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Cytochrome_cB PF11783.3 gi|156937918|ref|YP_001435714.1| - 6.5e-35 120.1 0.0 6.5e-35 120.1 0.0 5.6 7 1 0 7 7 7 1 Cytochrome c bacterial Cytochrome_C554 PF13435.1 gi|156937918|ref|YP_001435714.1| - 9.9e-15 54.7 18.5 6.4e-07 29.4 0.0 5.1 3 2 2 5 5 5 4 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|156937918|ref|YP_001435714.1| - 1.8e-14 53.0 19.9 6.9e-07 28.8 3.5 5.2 4 1 0 4 4 4 3 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|156937918|ref|YP_001435714.1| - 1.5e-08 34.8 22.4 0.0051 17.1 5.8 5.1 4 2 0 4 4 4 2 Cytochrome c3 Paired_CXXCH_1 PF09699.5 gi|156937918|ref|YP_001435714.1| - 0.00011 21.6 37.9 0.52 9.8 0.1 6.9 5 2 2 7 7 7 5 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_NNT PF03264.9 gi|156937918|ref|YP_001435714.1| - 0.00018 21.0 21.7 0.0084 15.5 1.1 5.0 3 1 2 5 5 5 3 NapC/NirT cytochrome c family, N-terminal region Cytochrom_CIII PF02085.11 gi|156937918|ref|YP_001435714.1| - 0.00018 21.5 22.9 0.0039 17.2 4.7 4.9 3 1 0 4 4 4 1 Class III cytochrome C family Multi-haem_cyto PF13447.1 gi|156937918|ref|YP_001435714.1| - 0.3 10.1 19.4 0.34 9.9 0.1 4.2 4 1 0 4 4 4 0 Seven times multi-haem cytochrome CxxCH Cytochrome_CBB3 PF13442.1 gi|156937918|ref|YP_001435714.1| - 0.46 10.6 27.9 3.2 7.9 0.3 7.7 4 1 2 6 6 6 0 Cytochrome C oxidase, cbb3-type, subunit III Dehyd-heme_bind PF09098.5 gi|156937918|ref|YP_001435714.1| - 2 7.8 9.1 41 3.5 0.0 5.0 5 1 0 5 5 5 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding GCC2_GCC3 PF07699.8 gi|156937918|ref|YP_001435714.1| - 5.9 6.5 15.2 16 5.1 0.0 5.0 6 0 0 6 6 6 0 GCC2 and GCC3 GCD14 PF08704.5 gi|156937919|ref|YP_001435715.1| - 6.2e-12 45.5 0.0 9e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|156937919|ref|YP_001435715.1| - 8.3e-06 25.8 0.0 1.4e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937919|ref|YP_001435715.1| - 1.7e-05 25.3 0.0 2.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937919|ref|YP_001435715.1| - 0.00015 21.4 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|156937919|ref|YP_001435715.1| - 0.014 14.8 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|156937919|ref|YP_001435715.1| - 0.063 12.6 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|156937919|ref|YP_001435715.1| - 0.064 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF911 PF06023.7 gi|156937920|ref|YP_001435716.1| - 1e-55 189.0 0.0 5.7e-37 127.4 0.0 2.0 1 1 1 2 2 2 2 Archaeal protein of unknown function (DUF911) Cas_Cas4 PF01930.12 gi|156937920|ref|YP_001435716.1| - 1.4e-05 25.0 0.0 8.6e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|156937920|ref|YP_001435716.1| - 0.0024 17.3 0.0 1.3 8.3 0.0 2.1 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Exo5 PF09810.4 gi|156937920|ref|YP_001435716.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease Cas_Cas1 PF01867.11 gi|156937921|ref|YP_001435717.1| - 4.4e-53 180.1 0.0 5.4e-53 179.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|156937922|ref|YP_001435718.1| - 3.2e-15 56.0 0.3 3.4e-15 55.9 0.2 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 PaaX_C PF08223.6 gi|156937922|ref|YP_001435718.1| - 0.022 14.4 0.0 0.023 14.3 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein C-terminal domain Cas_Cas4 PF01930.12 gi|156937923|ref|YP_001435719.1| - 2.4e-10 40.5 0.0 2.8e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|156937923|ref|YP_001435719.1| - 9.2e-09 35.0 3.5 4.3e-08 32.8 0.4 2.2 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF2800 PF10926.3 gi|156937923|ref|YP_001435719.1| - 0.015 14.4 0.0 0.062 12.4 0.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2800) BH4 PF02180.12 gi|156937923|ref|YP_001435719.1| - 0.062 12.8 0.1 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 Bcl-2 homology region 4 ATX_III PF08098.6 gi|156937923|ref|YP_001435719.1| - 3.8 7.4 8.8 0.64 9.8 2.0 2.4 2 0 0 2 2 2 0 Anemonia sulcata toxin III family HD PF01966.17 gi|156937924|ref|YP_001435720.1| - 6.7e-09 35.8 0.2 1.4e-08 34.7 0.1 1.6 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|156937924|ref|YP_001435720.1| - 0.0014 17.9 0.0 0.011 14.9 0.0 2.2 2 0 0 2 2 2 1 HDOD domain DEAD PF00270.24 gi|156937925|ref|YP_001435721.1| - 4.3e-08 32.8 0.0 3.1e-05 23.5 0.0 3.6 3 1 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|156937925|ref|YP_001435721.1| - 5.6e-06 26.1 0.0 2.7e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Cas_Cas5d PF09704.5 gi|156937927|ref|YP_001435723.1| - 1.1e-29 103.6 0.0 1.3e-29 103.4 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|156937928|ref|YP_001435724.1| - 8e-83 277.3 0.0 9.8e-83 277.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.5 gi|156937929|ref|YP_001435725.1| - 3.7e-07 30.1 0.0 6.2e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) Ribosomal_L20 PF00453.13 gi|156937929|ref|YP_001435725.1| - 0.051 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L20 TrmB PF01978.14 gi|156937930|ref|YP_001435726.1| - 2.8e-11 42.9 0.1 4.6e-11 42.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|156937930|ref|YP_001435726.1| - 8.6e-07 28.2 0.2 1.3e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|156937930|ref|YP_001435726.1| - 8.4e-05 22.4 0.1 0.00017 21.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|156937930|ref|YP_001435726.1| - 0.0001 21.9 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|156937930|ref|YP_001435726.1| - 0.00013 21.5 0.0 0.00022 20.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain FeoC PF09012.5 gi|156937930|ref|YP_001435726.1| - 0.00025 20.6 0.0 0.00092 18.8 0.0 1.8 2 0 0 2 2 2 1 FeoC like transcriptional regulator GntR PF00392.16 gi|156937930|ref|YP_001435726.1| - 0.00026 20.3 0.0 0.00043 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|156937930|ref|YP_001435726.1| - 0.00033 20.2 0.1 0.00079 19.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|156937930|ref|YP_001435726.1| - 0.00075 18.9 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|156937930|ref|YP_001435726.1| - 0.00092 19.1 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.7 gi|156937930|ref|YP_001435726.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein MarR_2 PF12802.2 gi|156937930|ref|YP_001435726.1| - 0.0015 18.1 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|156937930|ref|YP_001435726.1| - 0.002 17.9 0.1 0.0042 16.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|156937930|ref|YP_001435726.1| - 0.0027 17.2 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.1 gi|156937930|ref|YP_001435726.1| - 0.0042 16.6 0.0 0.0093 15.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sulfolobus_pRN PF05584.6 gi|156937930|ref|YP_001435726.1| - 0.0057 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|156937930|ref|YP_001435726.1| - 0.007 16.4 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.1 gi|156937930|ref|YP_001435726.1| - 0.01 15.3 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|156937930|ref|YP_001435726.1| - 0.031 14.5 0.0 0.051 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|156937930|ref|YP_001435726.1| - 0.038 13.1 0.0 0.07 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF4095 PF13338.1 gi|156937930|ref|YP_001435726.1| - 0.046 13.8 0.0 0.094 12.8 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4095) HTH_Crp_2 PF13545.1 gi|156937930|ref|YP_001435726.1| - 0.047 13.4 0.0 0.098 12.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|156937930|ref|YP_001435726.1| - 0.048 13.1 0.0 0.09 12.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|156937930|ref|YP_001435726.1| - 0.059 13.1 0.1 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.7 gi|156937930|ref|YP_001435726.1| - 0.067 13.0 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Lon_C PF05362.8 gi|156937931|ref|YP_001435727.1| - 1e-06 28.2 0.5 1.9e-06 27.3 0.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain NADHdh PF00146.16 gi|156937932|ref|YP_001435728.1| - 8.8e-57 192.5 16.1 9.2e-42 143.1 5.6 2.1 1 1 0 2 2 2 2 NADH dehydrogenase DUF1118 PF06549.7 gi|156937932|ref|YP_001435728.1| - 0.24 11.5 5.8 0.3 11.2 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1118) Fer4 PF00037.22 gi|156937933|ref|YP_001435729.1| - 5.4e-13 47.9 17.1 3.1e-08 32.8 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156937933|ref|YP_001435729.1| - 1.8e-11 44.2 11.1 3.4e-11 43.3 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156937933|ref|YP_001435729.1| - 1.9e-11 43.1 12.3 1.6e-07 30.8 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156937933|ref|YP_001435729.1| - 7e-10 38.5 10.4 2.1e-09 37.0 7.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156937933|ref|YP_001435729.1| - 1.4e-08 34.2 14.5 3.7e-06 26.5 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156937933|ref|YP_001435729.1| - 1.9e-08 34.4 10.7 3.9e-08 33.4 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156937933|ref|YP_001435729.1| - 7.5e-08 33.0 6.9 0.0024 18.5 1.3 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|156937933|ref|YP_001435729.1| - 7.3e-07 29.4 4.8 0.0014 18.9 0.2 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156937933|ref|YP_001435729.1| - 1.1e-06 28.4 13.5 0.0017 18.5 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156937933|ref|YP_001435729.1| - 5.8e-06 26.2 11.7 1.8e-05 24.6 8.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156937933|ref|YP_001435729.1| - 2.2e-05 24.7 6.4 0.0027 18.0 0.1 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156937933|ref|YP_001435729.1| - 3.1e-05 23.7 12.0 8.4e-05 22.3 8.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|156937933|ref|YP_001435729.1| - 0.00025 21.3 25.4 0.031 14.8 7.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|156937933|ref|YP_001435729.1| - 0.00072 20.0 13.5 0.0064 17.0 1.2 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|156937933|ref|YP_001435729.1| - 0.0026 18.0 12.1 0.017 15.4 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|156937933|ref|YP_001435729.1| - 0.0052 16.6 0.3 0.28 11.0 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|156937934|ref|YP_001435730.1| - 2.5e-14 53.2 7.7 3.2e-14 52.9 5.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CD20 PF04103.10 gi|156937934|ref|YP_001435730.1| - 0.16 11.9 10.8 0.28 11.0 7.5 1.4 1 0 0 1 1 1 0 CD20-like family DUF948 PF06103.6 gi|156937934|ref|YP_001435730.1| - 1.1 9.1 8.1 5.7 6.8 0.1 3.0 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Oxidored_q2 PF00420.19 gi|156937935|ref|YP_001435731.1| - 1e-07 31.4 3.4 1.3e-07 31.1 2.3 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CD20 PF04103.10 gi|156937935|ref|YP_001435731.1| - 1.5 8.7 4.8 0.45 10.4 1.1 1.7 1 1 0 1 1 1 0 CD20-like family VPEP PF07589.6 gi|156937935|ref|YP_001435731.1| - 1.8 8.5 0.0 1.8 8.5 0.0 3.5 3 1 0 3 3 3 0 PEP-CTERM motif Oxidored_q1 PF00361.15 gi|156937936|ref|YP_001435732.1| - 2.9e-28 98.9 25.9 2.9e-28 98.9 17.9 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Peptidase_M50 PF02163.17 gi|156937936|ref|YP_001435732.1| - 0.18 10.7 7.6 6.8 5.6 5.3 2.9 1 1 0 1 1 1 0 Peptidase family M50 APH PF01636.18 gi|156937937|ref|YP_001435733.1| - 0.0078 15.9 0.2 0.035 13.8 0.2 2.1 1 1 0 1 1 1 1 Phosphotransferase enzyme family GTP_EFTU PF00009.22 gi|156937938|ref|YP_001435734.1| - 3.4e-57 192.9 0.0 4.7e-57 192.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|156937938|ref|YP_001435734.1| - 2.7e-29 101.2 0.4 2.3e-28 98.2 0.1 2.5 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|156937938|ref|YP_001435734.1| - 9.6e-19 67.2 3.9 1.3e-18 66.8 1.7 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|156937938|ref|YP_001435734.1| - 3.4e-08 33.0 1.4 9.1e-08 31.6 1.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|156937938|ref|YP_001435734.1| - 7.4e-06 25.9 0.0 1.9e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|156937938|ref|YP_001435734.1| - 0.00017 22.0 0.1 0.0021 18.5 0.0 2.6 2 1 0 2 2 2 1 Miro-like protein Septin PF00735.13 gi|156937938|ref|YP_001435734.1| - 0.022 13.7 0.0 0.052 12.5 0.0 1.5 1 1 0 1 1 1 0 Septin Dynamin_N PF00350.18 gi|156937938|ref|YP_001435734.1| - 0.043 13.6 0.1 1.8 8.3 0.0 2.6 2 1 1 3 3 3 0 Dynamin family SRPRB PF09439.5 gi|156937938|ref|YP_001435734.1| - 0.11 11.7 0.1 2.1 7.5 0.0 2.2 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit ArgK PF03308.11 gi|156937938|ref|YP_001435734.1| - 0.58 8.8 4.0 6.2 5.5 0.3 2.9 3 1 0 3 3 3 0 ArgK protein DUF2276 PF10040.4 gi|156937939|ref|YP_001435735.1| - 6.1e-07 29.6 0.0 1.1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) tRNA_deacylase PF04414.7 gi|156937940|ref|YP_001435736.1| - 6.7e-70 234.5 0.0 8.2e-70 234.2 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase RVT_3 PF13456.1 gi|156937941|ref|YP_001435737.1| - 1.1e-18 66.7 0.0 1.5e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|156937941|ref|YP_001435737.1| - 8.9e-10 39.0 0.0 1.1e-09 38.7 0.0 1.1 1 0 0 1 1 1 1 RNase H Methyltransf_1N PF02870.10 gi|156937941|ref|YP_001435737.1| - 0.21 12.1 0.8 2.4 8.7 0.7 2.2 1 1 1 2 2 2 0 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain tRNA-synt_1g PF09334.6 gi|156937943|ref|YP_001435739.1| - 1.2e-145 485.0 0.0 1.5e-145 484.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|156937943|ref|YP_001435739.1| - 1.5e-12 46.3 0.5 1.1e-10 40.2 0.0 3.0 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|156937943|ref|YP_001435739.1| - 1.7e-09 37.6 0.0 3.3e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|156937943|ref|YP_001435739.1| - 0.0075 15.4 0.0 0.05 12.7 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|156937943|ref|YP_001435739.1| - 0.0084 15.9 3.6 0.019 14.7 2.5 1.6 1 0 0 1 1 1 1 Double zinc ribbon TetR_C_8 PF14278.1 gi|156937943|ref|YP_001435739.1| - 0.076 13.4 1.3 0.22 11.9 0.1 2.4 3 0 0 3 3 3 0 Transcriptional regulator C-terminal region zf-ribbon_3 PF13248.1 gi|156937943|ref|YP_001435739.1| - 0.37 10.0 13.4 0.3 10.3 0.7 2.7 2 1 1 3 3 3 0 zinc-ribbon domain Snf7 PF03357.16 gi|156937944|ref|YP_001435740.1| - 0.0092 15.3 2.4 0.014 14.7 1.7 1.4 1 1 0 1 1 1 1 Snf7 GvpK PF05121.7 gi|156937944|ref|YP_001435740.1| - 0.043 13.6 1.4 2.1 8.2 0.0 3.1 1 1 2 3 3 3 0 Gas vesicle protein K DUF3961 PF13106.1 gi|156937946|ref|YP_001435742.1| - 0.014 14.9 0.2 0.019 14.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3961) Choline_transpo PF04515.7 gi|156937946|ref|YP_001435742.1| - 0.015 14.0 0.3 0.016 13.9 0.2 1.1 1 0 0 1 1 1 0 Plasma-membrane choline transporter DUF1624 PF07786.7 gi|156937946|ref|YP_001435742.1| - 0.021 14.1 0.4 0.022 14.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) NTP_transferase PF00483.18 gi|156937947|ref|YP_001435743.1| - 3.3e-37 128.1 0.0 3.7e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|156937947|ref|YP_001435743.1| - 5.2e-14 52.6 0.0 7.4e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|156937947|ref|YP_001435743.1| - 0.00048 19.7 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TctB PF07331.6 gi|156937948|ref|YP_001435744.1| - 0.00085 18.9 2.1 0.00092 18.8 1.5 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF2752 PF10825.3 gi|156937948|ref|YP_001435744.1| - 0.71 9.9 4.2 0.93 9.5 2.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2752) DUF2723 PF11028.3 gi|156937949|ref|YP_001435745.1| - 0.23 10.9 4.0 0.27 10.6 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) DUF204 PF02659.10 gi|156937949|ref|YP_001435745.1| - 0.37 10.9 6.5 0.43 10.7 4.5 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF DUF3318 PF11780.3 gi|156937949|ref|YP_001435745.1| - 0.74 9.3 3.5 0.81 9.2 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3318) MS_channel PF00924.13 gi|156937949|ref|YP_001435745.1| - 2 7.7 7.6 2.3 7.5 5.3 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel DUF2244 PF10003.4 gi|156937949|ref|YP_001435745.1| - 4.3 6.7 6.5 4.6 6.5 4.5 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) TGT_C2 PF14810.1 gi|156937950|ref|YP_001435746.1| - 4.1e-18 65.0 0.0 6.4e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|156937950|ref|YP_001435746.1| - 3.1e-10 39.6 0.4 5e-10 38.9 0.3 1.4 1 0 0 1 1 1 1 PUA domain PAC2 PF09754.4 gi|156937951|ref|YP_001435747.1| - 1.6e-38 132.7 0.0 1.8e-38 132.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family UPF0104 PF03706.8 gi|156937954|ref|YP_001435750.1| - 5.6e-19 68.5 24.9 7.4e-19 68.1 17.3 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF2118 PF09891.4 gi|156937955|ref|YP_001435751.1| - 2e-48 163.9 5.0 2.2e-48 163.7 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Biotin_lipoyl PF00364.17 gi|156937955|ref|YP_001435751.1| - 0.37 10.4 2.9 2.3 7.9 0.2 2.9 2 1 1 3 3 3 0 Biotin-requiring enzyme polyprenyl_synt PF00348.12 gi|156937956|ref|YP_001435752.1| - 6.9e-69 231.5 0.0 8.4e-69 231.3 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DZR PF12773.2 gi|156937957|ref|YP_001435753.1| - 0.00097 18.9 10.3 0.0047 16.7 1.9 2.5 1 1 1 2 2 2 2 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|156937957|ref|YP_001435753.1| - 0.0038 16.9 5.3 0.045 13.5 0.9 2.4 2 0 0 2 2 2 1 zinc-ribbons zf-ribbon_3 PF13248.1 gi|156937957|ref|YP_001435753.1| - 0.0042 16.2 14.6 0.038 13.2 0.2 3.9 3 1 0 3 3 3 1 zinc-ribbon domain DUF35_N PF12172.3 gi|156937957|ref|YP_001435753.1| - 0.03 14.2 0.6 0.03 14.2 0.4 3.3 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|156937957|ref|YP_001435753.1| - 0.031 14.2 17.9 0.91 9.5 0.5 4.6 4 1 1 5 5 5 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|156937957|ref|YP_001435753.1| - 0.17 11.7 11.8 3.7 7.4 2.1 3.9 3 1 0 3 3 2 0 PhnA Zinc-Ribbon Trm112p PF03966.11 gi|156937957|ref|YP_001435753.1| - 0.19 12.1 6.7 6 7.3 0.4 3.9 2 1 1 3 3 3 0 Trm112p-like protein Sgf11 PF08209.6 gi|156937957|ref|YP_001435753.1| - 0.21 10.9 12.6 2.4 7.5 0.4 4.2 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) OrfB_Zn_ribbon PF07282.6 gi|156937957|ref|YP_001435753.1| - 0.26 10.9 11.7 1.3 8.6 0.8 3.5 3 0 0 3 3 3 0 Putative transposase DNA-binding domain FYVE PF01363.16 gi|156937957|ref|YP_001435753.1| - 0.32 10.9 7.3 1.3 8.9 1.4 2.4 2 0 0 2 2 2 0 FYVE zinc finger DUF2321 PF10083.4 gi|156937957|ref|YP_001435753.1| - 0.46 9.9 4.3 0.27 10.7 0.5 2.2 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) TF_Zn_Ribbon PF08271.7 gi|156937957|ref|YP_001435753.1| - 0.59 9.4 16.4 0.24 10.7 0.8 4.3 4 1 0 4 4 4 0 TFIIB zinc-binding Baculo_ME53 PF06061.6 gi|156937957|ref|YP_001435753.1| - 3.8 6.4 9.7 0.36 9.7 2.6 1.9 1 1 1 2 2 2 0 Baculoviridae ME53 HypA PF01155.14 gi|156937957|ref|YP_001435753.1| - 5.5 6.7 9.1 36 4.1 1.9 3.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-TFIIB PF13453.1 gi|156937957|ref|YP_001435753.1| - 5.8 6.1 10.4 16 4.8 2.9 3.5 3 1 0 3 3 3 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.5 gi|156937957|ref|YP_001435753.1| - 9.6 5.7 7.8 38 3.9 0.1 3.7 4 0 0 4 4 4 0 A2L zinc ribbon domain DUF87 PF01935.12 gi|156937958|ref|YP_001435754.1| - 6.8e-32 111.1 0.0 1.2e-31 110.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|156937958|ref|YP_001435754.1| - 1.2e-23 84.0 0.0 1.7e-23 83.5 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|156937958|ref|YP_001435754.1| - 1.4e-08 34.4 0.0 0.00064 19.2 0.0 2.6 2 1 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|156937958|ref|YP_001435754.1| - 4.2e-08 32.2 0.0 5.4e-06 25.2 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|156937958|ref|YP_001435754.1| - 1.3e-07 30.3 0.0 0.00043 18.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.10 gi|156937958|ref|YP_001435754.1| - 5.7e-05 23.0 0.0 0.00029 20.7 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|156937958|ref|YP_001435754.1| - 9.3e-05 21.9 0.0 0.13 11.7 0.0 2.4 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.9 gi|156937958|ref|YP_001435754.1| - 9.9e-05 21.0 0.0 0.00015 20.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_19 PF13245.1 gi|156937958|ref|YP_001435754.1| - 0.00033 20.3 0.6 0.0069 16.1 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain DEAD PF00270.24 gi|156937958|ref|YP_001435754.1| - 0.029 13.8 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase MobB PF03205.9 gi|156937958|ref|YP_001435754.1| - 0.099 12.3 0.1 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|156937958|ref|YP_001435754.1| - 0.1 11.9 0.1 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Lactamase_B_2 PF12706.2 gi|156937959|ref|YP_001435755.1| - 3.1e-20 72.5 0.0 4.2e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|156937959|ref|YP_001435755.1| - 6.3e-08 32.5 0.0 8.3e-08 32.1 0.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|156937959|ref|YP_001435755.1| - 0.00013 21.6 0.0 0.00028 20.6 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|156937959|ref|YP_001435755.1| - 0.081 11.8 0.0 3.5 6.4 0.0 2.5 3 0 0 3 3 3 0 cAMP phosphodiesterases class-II DEAD_assoc PF08494.6 gi|156937960|ref|YP_001435756.1| - 1.1e-59 201.2 0.0 2.3e-59 200.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|156937960|ref|YP_001435756.1| - 5.3e-32 110.6 0.0 1.1e-29 103.0 0.0 2.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|156937960|ref|YP_001435756.1| - 4.6e-18 64.8 0.0 6.3e-17 61.2 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|156937960|ref|YP_001435756.1| - 2.5e-07 30.7 0.0 1e-06 28.7 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF4130 PF13566.1 gi|156937960|ref|YP_001435756.1| - 0.0062 16.1 0.1 0.031 13.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4130 SNF2_N PF00176.18 gi|156937960|ref|YP_001435756.1| - 0.0097 14.7 0.2 0.027 13.2 0.0 1.7 3 0 0 3 3 3 1 SNF2 family N-terminal domain AAA_11 PF13086.1 gi|156937960|ref|YP_001435756.1| - 0.023 14.2 0.0 0.12 11.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain Transketolase_C PF02780.15 gi|156937960|ref|YP_001435756.1| - 0.025 14.4 0.0 0.085 12.7 0.0 1.9 1 0 0 1 1 1 0 Transketolase, C-terminal domain PhoH PF02562.11 gi|156937960|ref|YP_001435756.1| - 0.026 13.7 0.1 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein GTP_cyclohydro2 PF00925.15 gi|156937960|ref|YP_001435756.1| - 0.05 12.8 0.0 0.13 11.4 0.0 1.7 1 0 0 1 1 1 0 GTP cyclohydrolase II AAA_22 PF13401.1 gi|156937960|ref|YP_001435756.1| - 2.1 8.4 4.6 72 3.5 0.4 3.7 2 2 0 2 2 2 0 AAA domain Fe-ADH_2 PF13685.1 gi|156937962|ref|YP_001435758.1| - 3.3e-66 223.1 0.0 4.2e-66 222.8 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|156937962|ref|YP_001435758.1| - 2.9e-27 95.2 0.2 6.7e-27 94.0 0.2 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|156937962|ref|YP_001435758.1| - 2.1e-09 36.7 1.6 1.5e-07 30.6 1.1 2.8 1 1 0 1 1 1 1 3-dehydroquinate synthase Ribosomal_L18ae PF01775.12 gi|156937963|ref|YP_001435759.1| - 1.7e-07 31.1 0.0 2.9e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Vsr PF03852.10 gi|156937963|ref|YP_001435759.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 DNA mismatch endonuclease Vsr Prefoldin PF02996.12 gi|156937964|ref|YP_001435760.1| - 2.1e-14 53.1 9.5 3.4e-14 52.5 6.5 1.4 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|156937964|ref|YP_001435760.1| - 1.1e-08 34.8 12.7 2e-05 24.3 1.0 2.2 1 1 1 2 2 2 2 Prefoldin subunit Cortex-I_coil PF09304.5 gi|156937964|ref|YP_001435760.1| - 0.00058 19.8 11.4 0.0014 18.6 1.1 2.1 2 0 0 2 2 2 1 Cortexillin I, coiled coil Seryl_tRNA_N PF02403.17 gi|156937964|ref|YP_001435760.1| - 0.00078 19.4 13.0 0.064 13.2 1.3 2.2 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain SKI PF01202.17 gi|156937964|ref|YP_001435760.1| - 0.0011 18.8 0.2 0.0016 18.3 0.1 1.4 1 1 0 1 1 1 1 Shikimate kinase Nsp1_C PF05064.8 gi|156937964|ref|YP_001435760.1| - 0.017 14.7 0.9 0.017 14.7 0.6 2.0 2 0 0 2 2 2 0 Nsp1-like C-terminal region TLE_N PF03920.10 gi|156937964|ref|YP_001435760.1| - 0.02 14.6 3.8 0.56 10.0 0.4 2.2 2 0 0 2 2 2 0 Groucho/TLE N-terminal Q-rich domain Cor1 PF04803.7 gi|156937964|ref|YP_001435760.1| - 0.021 14.6 3.8 0.15 11.8 0.3 2.2 2 0 0 2 2 2 0 Cor1/Xlr/Xmr conserved region DUF4164 PF13747.1 gi|156937964|ref|YP_001435760.1| - 0.021 14.9 1.1 0.021 14.9 0.8 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) NPV_P10 PF05531.7 gi|156937964|ref|YP_001435760.1| - 0.024 14.8 2.1 0.12 12.5 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF972 PF06156.8 gi|156937964|ref|YP_001435760.1| - 0.025 14.9 5.4 1 9.7 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|156937964|ref|YP_001435760.1| - 0.034 13.9 4.2 1.3 8.7 0.3 2.1 2 0 0 2 2 2 0 Laminin Domain II DUF1664 PF07889.7 gi|156937964|ref|YP_001435760.1| - 0.038 13.7 1.8 0.23 11.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Apt1 PF10351.4 gi|156937964|ref|YP_001435760.1| - 0.04 12.7 0.5 0.06 12.2 0.4 1.3 1 1 0 1 1 1 0 Golgi-body localisation protein domain AAA_18 PF13238.1 gi|156937964|ref|YP_001435760.1| - 0.04 14.2 0.3 0.06 13.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain Spc24 PF08286.6 gi|156937964|ref|YP_001435760.1| - 0.042 13.5 5.6 0.74 9.5 0.3 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 GAS PF13851.1 gi|156937964|ref|YP_001435760.1| - 0.043 13.0 12.5 0.2 10.8 0.5 2.1 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Tegument_dsDNA PF12818.2 gi|156937964|ref|YP_001435760.1| - 0.052 12.4 0.0 0.074 11.9 0.0 1.3 1 0 0 1 1 1 0 dsDNA viral tegument protein FbpA PF05833.6 gi|156937964|ref|YP_001435760.1| - 0.058 11.9 13.2 0.018 13.5 1.8 2.0 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) IncA PF04156.9 gi|156937964|ref|YP_001435760.1| - 0.062 12.8 13.5 0.36 10.3 0.6 2.1 2 0 0 2 2 2 0 IncA protein EzrA PF06160.7 gi|156937964|ref|YP_001435760.1| - 0.066 11.3 7.4 0.043 12.0 0.3 2.0 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF3037 PF11236.3 gi|156937964|ref|YP_001435760.1| - 0.071 13.1 0.5 6.7 6.8 0.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3037) Fib_alpha PF08702.5 gi|156937964|ref|YP_001435760.1| - 0.099 12.7 2.2 0.34 11.0 0.1 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF4140 PF13600.1 gi|156937964|ref|YP_001435760.1| - 0.11 12.9 0.4 0.11 12.9 0.3 2.9 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4201 PF13870.1 gi|156937964|ref|YP_001435760.1| - 0.11 11.8 10.8 0.069 12.5 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Bacillus_HBL PF05791.6 gi|156937964|ref|YP_001435760.1| - 0.12 11.7 1.8 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) RmuC PF02646.11 gi|156937964|ref|YP_001435760.1| - 0.13 11.0 6.5 1.1 8.0 0.1 2.1 2 0 0 2 2 2 0 RmuC family Spc7 PF08317.6 gi|156937964|ref|YP_001435760.1| - 0.14 10.8 13.1 0.37 9.4 9.1 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein dNK PF01712.14 gi|156937964|ref|YP_001435760.1| - 0.18 11.7 0.7 0.63 9.9 0.1 1.9 2 0 0 2 2 2 0 Deoxynucleoside kinase KLRAQ PF10205.4 gi|156937964|ref|YP_001435760.1| - 0.2 11.7 5.7 0.78 9.8 0.2 2.3 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein FadA PF09403.5 gi|156937964|ref|YP_001435760.1| - 0.2 11.6 12.0 0.17 11.8 2.3 2.3 2 0 0 2 2 2 0 Adhesion protein FadA Occludin_ELL PF07303.8 gi|156937964|ref|YP_001435760.1| - 0.2 12.3 2.4 11 6.8 0.1 2.2 2 0 0 2 2 2 0 Occludin homology domain APG6 PF04111.7 gi|156937964|ref|YP_001435760.1| - 0.22 10.5 12.9 0.27 10.2 1.5 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 Baculo_PEP_C PF04513.7 gi|156937964|ref|YP_001435760.1| - 0.22 11.3 1.0 1.1 9.0 0.1 2.0 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus GP41 PF00517.12 gi|156937964|ref|YP_001435760.1| - 0.25 10.8 0.9 0.43 10.0 0.1 1.7 2 0 0 2 2 2 0 Retroviral envelope protein AAA_27 PF13514.1 gi|156937964|ref|YP_001435760.1| - 0.26 8.9 11.5 0.48 8.0 8.0 1.4 1 1 0 1 1 1 0 AAA domain HrpB7 PF09486.5 gi|156937964|ref|YP_001435760.1| - 0.28 11.1 8.0 0.65 9.9 1.1 2.1 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF148 PF02520.12 gi|156937964|ref|YP_001435760.1| - 0.3 10.8 4.2 1.9 8.2 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF148 Filament PF00038.16 gi|156937964|ref|YP_001435760.1| - 0.3 10.4 11.7 1.1 8.7 8.1 1.7 1 1 0 1 1 1 0 Intermediate filament protein DUF3251 PF11622.3 gi|156937964|ref|YP_001435760.1| - 0.34 10.2 2.8 0.42 9.9 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3251) Syntaxin-6_N PF09177.6 gi|156937964|ref|YP_001435760.1| - 0.37 11.2 4.3 6.7 7.1 0.1 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Tropomyosin_1 PF12718.2 gi|156937964|ref|YP_001435760.1| - 0.44 10.3 12.5 0.53 10.1 1.4 2.1 2 0 0 2 2 2 0 Tropomyosin like DUF3450 PF11932.3 gi|156937964|ref|YP_001435760.1| - 0.47 9.6 5.2 1.4 8.1 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) YlqD PF11068.3 gi|156937964|ref|YP_001435760.1| - 0.54 10.2 9.8 0.27 11.2 0.5 2.2 2 0 0 2 2 2 0 YlqD protein TBPIP PF07106.8 gi|156937964|ref|YP_001435760.1| - 0.7 9.4 10.2 0.26 10.8 0.7 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Hemerythrin PF01814.18 gi|156937964|ref|YP_001435760.1| - 0.74 9.9 4.7 2.8 8.0 0.1 2.2 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain TPR_MLP1_2 PF07926.7 gi|156937964|ref|YP_001435760.1| - 0.75 9.5 17.1 6.2 6.5 11.8 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein ADIP PF11559.3 gi|156937964|ref|YP_001435760.1| - 0.91 9.4 12.0 0.37 10.7 1.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DivIC PF04977.10 gi|156937964|ref|YP_001435760.1| - 0.96 8.9 18.1 0.6 9.6 3.0 3.0 2 1 1 3 3 3 0 Septum formation initiator DUF4446 PF14584.1 gi|156937964|ref|YP_001435760.1| - 0.98 9.2 4.4 6 6.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) COG2 PF06148.6 gi|156937964|ref|YP_001435760.1| - 1 9.2 4.8 12 5.7 0.1 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 NTP_transf_5 PF14907.1 gi|156937964|ref|YP_001435760.1| - 1.1 8.5 3.6 0.71 9.1 0.1 1.9 2 0 0 2 2 2 0 Uncharacterised nucleotidyltransferase DUF342 PF03961.8 gi|156937964|ref|YP_001435760.1| - 1.4 7.2 11.4 1.8 6.9 3.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF3391 PF11871.3 gi|156937964|ref|YP_001435760.1| - 1.6 8.9 7.0 4.2 7.6 0.9 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3391) Uds1 PF15456.1 gi|156937964|ref|YP_001435760.1| - 1.8 8.5 10.5 8.7 6.3 7.2 1.9 1 1 0 1 1 1 0 Up-regulated During Septation TMF_TATA_bd PF12325.3 gi|156937964|ref|YP_001435760.1| - 1.9 8.2 13.7 1.8 8.3 0.5 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Med4 PF10018.4 gi|156937964|ref|YP_001435760.1| - 1.9 7.8 7.0 4.6 6.6 0.6 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Adeno_PIX PF03955.9 gi|156937964|ref|YP_001435760.1| - 2.2 8.8 4.6 1.9 9.0 0.2 2.2 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) zf-C4H2 PF10146.4 gi|156937964|ref|YP_001435760.1| - 2.5 8.0 7.6 2.5 8.0 1.5 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein Snf7 PF03357.16 gi|156937964|ref|YP_001435760.1| - 3.3 7.0 10.8 64 2.8 7.2 2.1 1 1 0 1 1 1 0 Snf7 DUF4200 PF13863.1 gi|156937964|ref|YP_001435760.1| - 3.3 7.6 17.3 2.3 8.1 2.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) MRP-S26 PF14943.1 gi|156937964|ref|YP_001435760.1| - 3.9 6.9 11.8 0.41 10.1 1.7 2.1 2 0 0 2 2 2 0 Mitochondrial ribosome subunit S26 End3 PF12761.2 gi|156937964|ref|YP_001435760.1| - 4.2 6.9 7.7 0.42 10.2 0.2 2.0 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 AAA_13 PF13166.1 gi|156937964|ref|YP_001435760.1| - 4.9 5.4 12.4 57 1.9 8.7 1.9 1 1 0 1 1 1 0 AAA domain CCDC-167 PF15188.1 gi|156937964|ref|YP_001435760.1| - 6.3 6.8 10.0 5.7 6.9 0.5 2.6 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 DUF4407 PF14362.1 gi|156937964|ref|YP_001435760.1| - 6.8 5.5 8.7 1.3 7.9 0.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) TMF_DNA_bd PF12329.3 gi|156937964|ref|YP_001435760.1| - 6.9 6.5 24.6 5.4 6.8 3.9 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF16 PF01519.11 gi|156937964|ref|YP_001435760.1| - 7 6.9 10.6 54 4.0 7.4 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF2205 PF10224.4 gi|156937964|ref|YP_001435760.1| - 9.2 5.9 13.9 6.7 6.3 3.5 2.5 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) SRP54 PF00448.17 gi|156937965|ref|YP_001435761.1| - 5.8e-77 257.5 0.5 8.4e-77 257.0 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|156937965|ref|YP_001435761.1| - 1.1e-09 38.1 7.1 1.1e-09 38.1 4.9 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain ArgK PF03308.11 gi|156937965|ref|YP_001435761.1| - 0.00011 21.1 3.3 0.00015 20.6 0.8 2.2 1 1 0 2 2 2 1 ArgK protein cobW PF02492.14 gi|156937965|ref|YP_001435761.1| - 0.00012 21.5 1.6 0.00056 19.3 1.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|156937965|ref|YP_001435761.1| - 0.00032 20.3 0.9 0.00053 19.6 0.6 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|156937965|ref|YP_001435761.1| - 0.00045 19.9 0.3 0.0023 17.6 0.1 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|156937965|ref|YP_001435761.1| - 0.0019 17.6 5.0 0.029 13.7 3.5 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|156937965|ref|YP_001435761.1| - 0.0039 17.0 0.0 0.0076 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|156937965|ref|YP_001435761.1| - 0.0097 16.0 0.0 0.027 14.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|156937965|ref|YP_001435761.1| - 0.011 15.9 0.1 0.025 14.7 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|156937965|ref|YP_001435761.1| - 0.016 14.9 0.6 0.27 10.9 0.2 2.4 1 1 1 2 2 2 0 NTPase MMR_HSR1 PF01926.18 gi|156937965|ref|YP_001435761.1| - 0.027 14.4 0.5 0.062 13.2 0.1 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|156937965|ref|YP_001435761.1| - 0.029 14.0 2.5 0.077 12.7 1.3 2.0 1 1 1 2 2 2 0 Part of AAA domain AAA_16 PF13191.1 gi|156937965|ref|YP_001435761.1| - 0.082 12.8 0.0 0.27 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|156937965|ref|YP_001435761.1| - 0.09 13.2 0.3 0.23 11.9 0.0 1.9 2 1 0 2 2 2 0 Miro-like protein SecE PF00584.15 gi|156937966|ref|YP_001435762.1| - 0.021 14.3 0.1 0.025 14.1 0.1 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex DUF2636 PF11120.3 gi|156937966|ref|YP_001435762.1| - 0.86 9.1 5.0 0.41 10.1 1.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) Spt5-NGN PF03439.8 gi|156937967|ref|YP_001435763.1| - 1.7e-19 69.3 0.4 6.4e-19 67.4 0.0 1.9 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|156937967|ref|YP_001435763.1| - 0.0028 17.3 0.4 0.0073 15.9 0.3 1.8 1 0 0 1 1 1 1 KOW motif Ribosomal_L11_N PF03946.9 gi|156937968|ref|YP_001435764.1| - 3.8e-18 64.6 2.9 5.3e-18 64.2 0.4 2.0 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|156937968|ref|YP_001435764.1| - 4.1e-18 65.2 0.1 6.9e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.16 gi|156937969|ref|YP_001435765.1| - 2e-43 148.3 0.1 2.3e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|156937970|ref|YP_001435766.1| - 6.1e-23 80.6 1.5 1.9e-22 79.0 1.1 1.8 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|156937970|ref|YP_001435766.1| - 2.3e-05 24.7 16.3 3e-05 24.3 10.1 2.1 1 1 1 2 2 2 1 60s Acidic ribosomal protein VitD-bind_III PF09164.5 gi|156937970|ref|YP_001435766.1| - 0.14 11.8 0.1 0.34 10.5 0.1 1.7 1 0 0 1 1 1 0 Vitamin D binding protein, domain III RNA_Me_trans PF04252.8 gi|156937971|ref|YP_001435767.1| - 9.6e-40 136.0 0.2 1.1e-39 135.9 0.2 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase TRM PF02005.11 gi|156937972|ref|YP_001435768.1| - 1.2e-84 284.4 0.0 1.5e-84 284.1 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|156937972|ref|YP_001435768.1| - 7.2e-10 38.7 0.0 1.1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|156937972|ref|YP_001435768.1| - 3.9e-09 36.5 0.3 9e-09 35.3 0.2 1.7 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|156937972|ref|YP_001435768.1| - 6e-09 35.5 0.0 1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|156937972|ref|YP_001435768.1| - 4.5e-07 29.2 0.0 6.5e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|156937972|ref|YP_001435768.1| - 0.00059 19.4 0.0 0.00099 18.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|156937972|ref|YP_001435768.1| - 0.00077 18.8 0.1 0.0012 18.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|156937972|ref|YP_001435768.1| - 0.0015 19.1 0.0 0.0033 17.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DUF2067 PF09840.4 gi|156937972|ref|YP_001435768.1| - 0.0022 17.5 0.1 0.0047 16.4 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) Methyltransf_16 PF10294.4 gi|156937972|ref|YP_001435768.1| - 0.0024 17.3 0.0 0.0036 16.7 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|156937972|ref|YP_001435768.1| - 0.0058 16.2 0.0 0.021 14.4 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|156937972|ref|YP_001435768.1| - 0.0083 15.1 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase DUF948 PF06103.6 gi|156937973|ref|YP_001435769.1| - 0.0076 16.0 0.1 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|156937973|ref|YP_001435769.1| - 3.2 7.2 6.7 0.27 10.7 0.9 2.0 1 1 1 2 2 2 0 IncA protein Lactamase_B PF00753.22 gi|156937974|ref|YP_001435770.1| - 9.2e-21 74.3 0.1 1.3e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|156937974|ref|YP_001435770.1| - 1.2e-06 28.6 0.1 2.7e-06 27.4 0.1 1.7 1 1 0 1 1 1 1 Flavodoxin Peripla_BP_6 PF13458.1 gi|156937974|ref|YP_001435770.1| - 0.0008 18.8 0.1 0.0021 17.4 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein Lactamase_B_2 PF12706.2 gi|156937974|ref|YP_001435770.1| - 0.0025 17.4 0.1 0.0086 15.6 0.1 1.8 1 1 1 2 2 2 1 Beta-lactamase superfamily domain FMN_red PF03358.10 gi|156937974|ref|YP_001435770.1| - 0.0099 15.3 0.0 0.032 13.7 0.0 1.8 2 0 0 2 2 2 1 NADPH-dependent FMN reductase Epimerase PF01370.16 gi|156937975|ref|YP_001435771.1| - 3.5e-09 36.4 0.0 4.3e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|156937975|ref|YP_001435771.1| - 0.0016 17.4 0.1 0.0083 15.0 0.0 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|156937975|ref|YP_001435771.1| - 0.0029 16.5 0.0 0.0069 15.3 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein APG17 PF04108.7 gi|156937976|ref|YP_001435772.1| - 0.024 13.4 0.1 0.033 13.0 0.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 Sigma70_r4 PF04545.11 gi|156937976|ref|YP_001435772.1| - 0.088 12.1 0.2 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MR_MLE_C PF13378.1 gi|156937977|ref|YP_001435773.1| - 2.8e-10 40.1 0.0 1.2e-09 38.1 0.0 2.1 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|156937977|ref|YP_001435773.1| - 5.8e-05 23.5 0.8 0.00014 22.2 0.0 2.1 2 1 1 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Methyltransf_18 PF12847.2 gi|156937978|ref|YP_001435774.1| - 3e-05 24.5 0.0 5.6e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_21 PF05050.7 gi|156937978|ref|YP_001435774.1| - 6.6e-05 22.9 0.1 0.0004 20.3 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase FkbM domain MTS PF05175.9 gi|156937978|ref|YP_001435774.1| - 0.001 18.4 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|156937978|ref|YP_001435774.1| - 0.004 16.7 0.0 0.019 14.5 0.0 1.9 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|156937978|ref|YP_001435774.1| - 0.059 13.8 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.8 gi|156937978|ref|YP_001435774.1| - 0.068 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_25 PF13649.1 gi|156937978|ref|YP_001435774.1| - 0.075 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain ACT_3 PF10000.4 gi|156937978|ref|YP_001435774.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 ACT domain GDPD PF03009.12 gi|156937979|ref|YP_001435775.1| - 1.2e-23 83.9 0.0 2.9e-14 53.1 0.0 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family TPR_2 PF07719.12 gi|156937979|ref|YP_001435775.1| - 0.055 13.3 0.5 0.7 9.9 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat PI-PLC-X PF00388.14 gi|156937979|ref|YP_001435775.1| - 0.061 12.7 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain Metallophos_2 PF12850.2 gi|156937980|ref|YP_001435776.1| - 2.1e-26 92.6 0.0 2.5e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|156937980|ref|YP_001435776.1| - 7.2e-18 64.6 0.1 9.5e-15 54.4 0.0 2.9 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|156937980|ref|YP_001435776.1| - 7.9e-06 25.4 0.5 0.00046 19.6 0.4 2.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HEM4 PF02602.10 gi|156937980|ref|YP_001435776.1| - 0.012 14.8 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Methyltransf_25 PF13649.1 gi|156937981|ref|YP_001435777.1| - 4.3e-15 55.8 0.0 9.9e-15 54.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156937981|ref|YP_001435777.1| - 2.1e-14 53.5 0.0 5.5e-14 52.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|156937981|ref|YP_001435777.1| - 1.3e-13 51.2 0.0 3.3e-13 49.9 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156937981|ref|YP_001435777.1| - 1.6e-13 51.2 0.1 2.7e-13 50.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|156937981|ref|YP_001435777.1| - 4.9e-13 48.9 0.0 6.2e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|156937981|ref|YP_001435777.1| - 1.8e-11 44.0 0.0 6.8e-11 42.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|156937981|ref|YP_001435777.1| - 6e-10 39.4 0.0 1.1e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|156937981|ref|YP_001435777.1| - 6.6e-08 31.9 0.0 1.2e-07 31.0 0.0 1.4 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|156937981|ref|YP_001435777.1| - 4.6e-07 29.3 0.0 7.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|156937981|ref|YP_001435777.1| - 8.7e-06 25.4 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|156937981|ref|YP_001435777.1| - 2.3e-05 23.5 0.0 3.6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.13 gi|156937981|ref|YP_001435777.1| - 4.8e-05 22.5 0.0 5.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|156937981|ref|YP_001435777.1| - 0.00014 21.4 0.0 0.00021 20.8 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|156937981|ref|YP_001435777.1| - 0.00021 20.8 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TehB PF03848.9 gi|156937981|ref|YP_001435777.1| - 0.00027 20.1 0.0 0.00039 19.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.6 gi|156937981|ref|YP_001435777.1| - 0.00036 20.0 0.0 0.00054 19.4 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.8 gi|156937981|ref|YP_001435777.1| - 0.00054 19.1 0.0 0.00083 18.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|156937981|ref|YP_001435777.1| - 0.00074 19.1 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|156937981|ref|YP_001435777.1| - 0.00099 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 DNA methylase RrnaAD PF00398.15 gi|156937981|ref|YP_001435777.1| - 0.0013 17.7 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.6 gi|156937981|ref|YP_001435777.1| - 0.0053 16.1 0.0 0.0077 15.6 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Met_10 PF02475.11 gi|156937981|ref|YP_001435777.1| - 0.036 13.6 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein tRNA_U5-meth_tr PF05958.6 gi|156937981|ref|YP_001435777.1| - 0.047 12.3 0.0 0.086 11.5 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase N2227 PF07942.7 gi|156937981|ref|YP_001435777.1| - 0.072 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 N2227-like protein TrkA_N PF02254.13 gi|156937981|ref|YP_001435777.1| - 0.09 12.7 0.1 0.31 11.0 0.1 1.9 1 1 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|156937981|ref|YP_001435777.1| - 0.16 11.3 0.0 2.4 7.4 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_3 PF01596.12 gi|156937981|ref|YP_001435777.1| - 0.17 10.9 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase 3HCDH_N PF02737.13 gi|156937981|ref|YP_001435777.1| - 0.17 11.5 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1803 PF08820.5 gi|156937983|ref|YP_001435779.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Ribosomal_L34e PF01199.13 gi|156937984|ref|YP_001435780.1| - 7.9e-33 112.5 6.2 8.6e-33 112.4 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.1 gi|156937984|ref|YP_001435780.1| - 0.0016 18.1 0.7 0.25 11.1 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) Zn_ribbon_recom PF13408.1 gi|156937984|ref|YP_001435780.1| - 0.58 10.4 5.4 0.12 12.6 1.2 1.8 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain AAA_18 PF13238.1 gi|156937985|ref|YP_001435781.1| - 2e-16 60.4 0.0 2.7e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|156937985|ref|YP_001435781.1| - 4e-07 30.8 0.0 6.4e-07 30.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|156937985|ref|YP_001435781.1| - 1.1e-06 27.8 0.0 1.3e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 6-phosphofructo-2-kinase SRP54 PF00448.17 gi|156937985|ref|YP_001435781.1| - 3.1e-06 26.7 0.0 5.2e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.12 gi|156937985|ref|YP_001435781.1| - 5.8e-06 25.8 0.8 9e-05 21.9 0.5 2.2 1 1 0 1 1 1 1 Thymidylate kinase NTPase_1 PF03266.10 gi|156937985|ref|YP_001435781.1| - 6.9e-06 25.8 5.2 2e-05 24.3 2.2 2.6 1 1 1 2 2 2 1 NTPase KTI12 PF08433.5 gi|156937985|ref|YP_001435781.1| - 1.3e-05 24.5 0.2 2.4e-05 23.6 0.1 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|156937985|ref|YP_001435781.1| - 2e-05 24.2 0.5 4.4e-05 23.1 0.3 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|156937985|ref|YP_001435781.1| - 5.3e-05 23.2 0.2 0.00012 22.0 0.1 1.5 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|156937985|ref|YP_001435781.1| - 5.7e-05 22.0 0.8 9.9e-05 21.2 0.6 1.4 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|156937985|ref|YP_001435781.1| - 0.00011 21.9 0.5 0.00024 20.8 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|156937985|ref|YP_001435781.1| - 0.00036 20.2 0.1 0.0034 17.1 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain CbiA PF01656.18 gi|156937985|ref|YP_001435781.1| - 0.00053 19.4 0.5 0.0013 18.1 0.3 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.12 gi|156937985|ref|YP_001435781.1| - 0.001 18.6 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|156937985|ref|YP_001435781.1| - 0.0016 18.4 0.0 0.002 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|156937985|ref|YP_001435781.1| - 0.0017 18.2 0.7 0.0081 16.0 0.5 2.0 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|156937985|ref|YP_001435781.1| - 0.0019 17.2 0.0 0.0019 17.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|156937985|ref|YP_001435781.1| - 0.011 15.9 0.3 0.024 14.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|156937985|ref|YP_001435781.1| - 0.015 14.9 0.4 0.029 14.0 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase SKI PF01202.17 gi|156937985|ref|YP_001435781.1| - 0.024 14.5 0.4 4.2 7.2 0.0 2.4 2 1 0 2 2 2 0 Shikimate kinase AAA PF00004.24 gi|156937985|ref|YP_001435781.1| - 0.025 14.7 1.2 0.069 13.3 0.9 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Lipoprotein_9 PF03180.9 gi|156937985|ref|YP_001435781.1| - 0.026 13.4 0.1 0.058 12.2 0.0 1.5 1 0 0 1 1 1 0 NLPA lipoprotein Arch_ATPase PF01637.13 gi|156937985|ref|YP_001435781.1| - 0.038 13.6 0.2 0.047 13.3 0.1 1.4 1 1 0 1 1 1 0 Archaeal ATPase Mur_ligase_M PF08245.7 gi|156937985|ref|YP_001435781.1| - 0.046 13.7 0.0 0.12 12.4 0.0 1.8 1 1 1 2 2 2 0 Mur ligase middle domain POR PF01558.13 gi|156937985|ref|YP_001435781.1| - 0.086 12.7 0.6 0.33 10.8 0.4 2.1 1 1 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase cobW PF02492.14 gi|156937985|ref|YP_001435781.1| - 0.089 12.2 0.4 0.15 11.5 0.3 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_26 PF13500.1 gi|156937985|ref|YP_001435781.1| - 0.15 11.6 3.1 0.77 9.3 0.3 2.3 2 1 1 3 3 3 0 AAA domain Viral_helicase1 PF01443.13 gi|156937985|ref|YP_001435781.1| - 0.16 11.4 0.2 0.27 10.7 0.1 1.4 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PepSY_2 PF13670.1 gi|156937985|ref|YP_001435781.1| - 0.31 10.9 0.1 0.31 10.9 0.1 2.3 3 0 0 3 3 2 0 Peptidase propeptide and YPEB domain SecY PF00344.15 gi|156937986|ref|YP_001435782.1| - 4.8e-74 249.3 15.2 5.7e-74 249.1 9.3 1.9 2 1 0 2 2 2 1 SecY translocase Plug_translocon PF10559.4 gi|156937986|ref|YP_001435782.1| - 1.9e-09 36.8 0.7 8.3e-09 34.8 0.5 2.2 1 0 0 1 1 1 1 Plug domain of Sec61p Hist_deacetyl PF00850.14 gi|156937987|ref|YP_001435783.1| - 3.1e-79 266.4 0.0 3.9e-79 266.1 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain SBP_bac_5 PF00496.17 gi|156937988|ref|YP_001435784.1| - 2.7e-29 102.1 6.9 3e-25 88.8 0.2 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle A2M_N PF01835.14 gi|156937988|ref|YP_001435784.1| - 1.1e-06 28.7 0.1 4.1e-06 26.9 0.0 2.1 2 0 0 2 2 2 1 MG2 domain YtkA PF13115.1 gi|156937988|ref|YP_001435784.1| - 0.0032 17.7 0.6 0.01 16.1 0.4 1.8 1 0 0 1 1 1 1 YtkA-like DUF4480 PF13715.1 gi|156937988|ref|YP_001435784.1| - 0.067 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) MoaC PF01967.16 gi|156937989|ref|YP_001435785.1| - 3e-45 153.2 1.0 3.4e-45 153.0 0.7 1.0 1 0 0 1 1 1 1 MoaC family FecCD PF01032.13 gi|156937990|ref|YP_001435786.1| - 3.6e-34 117.9 25.0 4.3e-34 117.7 17.4 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|156937991|ref|YP_001435787.1| - 2.6e-18 66.0 0.0 3.3e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein CbiA PF01656.18 gi|156937992|ref|YP_001435788.1| - 7.3e-11 41.8 0.2 3.5e-09 36.3 0.2 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|156937992|ref|YP_001435788.1| - 3e-05 23.9 0.0 5.9e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|156937992|ref|YP_001435788.1| - 0.0018 17.3 0.6 0.011 14.7 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.17 gi|156937992|ref|YP_001435788.1| - 0.0082 15.6 0.0 0.057 12.8 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain VirC1 PF07015.6 gi|156937992|ref|YP_001435788.1| - 0.044 12.8 0.4 0.28 10.2 0.0 2.0 2 0 0 2 2 2 0 VirC1 protein AAA_16 PF13191.1 gi|156937992|ref|YP_001435788.1| - 0.044 13.7 0.0 0.13 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain Fer4_NifH PF00142.13 gi|156937992|ref|YP_001435788.1| - 0.045 12.9 0.1 6.3 5.8 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|156937992|ref|YP_001435788.1| - 0.055 12.5 0.1 0.12 11.4 0.0 1.5 2 0 0 2 2 2 0 ATPase MipZ YhjQ PF06564.7 gi|156937992|ref|YP_001435788.1| - 0.12 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 YhjQ protein AAA_26 PF13500.1 gi|156937992|ref|YP_001435788.1| - 0.19 11.2 1.2 5.4 6.5 0.1 2.4 2 1 0 2 2 2 0 AAA domain Auto_anti-p27 PF06677.7 gi|156937993|ref|YP_001435789.1| - 2.2e-17 62.5 0.4 3.4e-17 61.8 0.3 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|156937993|ref|YP_001435789.1| - 0.0018 17.9 0.3 0.0049 16.5 0.2 1.8 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain FYDLN_acid PF09538.5 gi|156937993|ref|YP_001435789.1| - 0.013 16.0 0.0 0.017 15.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|156937993|ref|YP_001435789.1| - 0.013 14.7 0.1 0.022 14.0 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding RRN7 PF11781.3 gi|156937993|ref|YP_001435789.1| - 0.045 13.2 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 OrfB_Zn_ribbon PF07282.6 gi|156937993|ref|YP_001435789.1| - 0.082 12.5 0.2 0.27 10.9 0.0 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2863 PF11062.3 gi|156937993|ref|YP_001435789.1| - 0.084 10.9 0.3 0.27 9.2 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2863) DUF723 PF05265.8 gi|156937993|ref|YP_001435789.1| - 0.19 11.5 0.8 0.45 10.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF723) Rad50_zn_hook PF04423.9 gi|156937993|ref|YP_001435789.1| - 0.2 11.1 1.8 0.37 10.2 0.4 2.3 1 1 1 2 2 2 0 Rad50 zinc hook motif Isochorismatase PF00857.15 gi|156937994|ref|YP_001435790.1| - 6.3e-52 176.0 0.0 7.1e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family GHMP_kinases_N PF00288.21 gi|156937995|ref|YP_001435791.1| - 2.4e-14 53.1 3.3 2.4e-14 53.1 2.3 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|156937995|ref|YP_001435791.1| - 7.2e-06 26.1 1.6 1.2e-05 25.4 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal Herpes_UL51 PF04540.8 gi|156937995|ref|YP_001435791.1| - 0.04 13.5 0.1 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Herpesvirus UL51 protein DUF373 PF04123.8 gi|156937996|ref|YP_001435792.1| - 8.1e-101 337.4 9.1 1e-100 337.1 6.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF4225 PF13988.1 gi|156937996|ref|YP_001435792.1| - 0.041 13.3 0.0 0.09 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) CitMHS PF03600.11 gi|156937996|ref|YP_001435792.1| - 1.2 7.6 11.5 3.1 6.2 7.9 1.5 1 1 0 1 1 1 0 Citrate transporter Reo_sigmaC PF04582.7 gi|156937997|ref|YP_001435793.1| - 4.1e-09 36.0 3.3 9.3e-07 28.3 0.6 2.2 1 1 1 2 2 2 2 Reovirus sigma C capsid protein EzrA PF06160.7 gi|156937997|ref|YP_001435793.1| - 1.7e-07 29.8 36.7 2.5e-05 22.7 10.0 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA TBPIP PF07106.8 gi|156937997|ref|YP_001435793.1| - 8.2e-07 28.7 44.6 4.3e-05 23.1 6.8 4.0 1 1 3 4 4 4 4 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|156937997|ref|YP_001435793.1| - 2.1e-05 23.2 17.7 2.1e-05 23.2 12.2 2.0 1 1 1 2 2 2 1 AAA domain NPV_P10 PF05531.7 gi|156937997|ref|YP_001435793.1| - 7e-05 23.0 1.0 7e-05 23.0 0.7 4.2 2 2 1 3 3 3 1 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|156937997|ref|YP_001435793.1| - 8.3e-05 22.2 52.6 0.0022 17.6 14.0 3.1 2 1 1 3 3 3 2 IncA protein Seryl_tRNA_N PF02403.17 gi|156937997|ref|YP_001435793.1| - 0.00031 20.7 52.5 0.0035 17.3 8.8 4.2 1 1 3 4 4 4 3 Seryl-tRNA synthetase N-terminal domain Myosin_tail_1 PF01576.14 gi|156937997|ref|YP_001435793.1| - 0.00032 18.6 55.0 0.00042 18.2 38.1 1.1 1 0 0 1 1 1 1 Myosin tail Spc7 PF08317.6 gi|156937997|ref|YP_001435793.1| - 0.00064 18.4 49.6 0.012 14.3 15.6 3.0 1 1 0 2 2 2 2 Spc7 kinetochore protein DUF3584 PF12128.3 gi|156937997|ref|YP_001435793.1| - 0.00073 17.0 39.9 0.0013 16.1 4.0 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) Laminin_II PF06009.7 gi|156937997|ref|YP_001435793.1| - 0.0008 19.1 6.9 0.0008 19.1 4.8 3.5 1 1 2 3 3 3 1 Laminin Domain II MCPsignal PF00015.16 gi|156937997|ref|YP_001435793.1| - 0.0012 18.4 13.5 0.023 14.2 3.5 2.4 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HsbA PF12296.3 gi|156937997|ref|YP_001435793.1| - 0.0021 17.9 3.0 1.5 8.7 0.0 4.1 3 2 1 4 4 4 1 Hydrophobic surface binding protein A APG6 PF04111.7 gi|156937997|ref|YP_001435793.1| - 0.0022 17.0 47.7 0.034 13.1 8.2 3.1 1 1 2 3 3 3 2 Autophagy protein Apg6 AAA_27 PF13514.1 gi|156937997|ref|YP_001435793.1| - 0.0029 15.3 41.9 0.015 13.0 12.5 2.0 1 1 1 2 2 2 2 AAA domain AKNA PF12443.3 gi|156937997|ref|YP_001435793.1| - 0.0059 16.6 0.2 0.0059 16.6 0.1 5.4 1 1 3 6 6 6 1 AT-hook-containing transcription factor YlqD PF11068.3 gi|156937997|ref|YP_001435793.1| - 0.0082 16.1 3.8 0.0082 16.1 2.6 3.8 2 1 0 3 3 3 1 YlqD protein Mnd1 PF03962.10 gi|156937997|ref|YP_001435793.1| - 0.0084 15.7 44.9 0.056 13.1 11.6 3.4 1 1 2 3 3 3 1 Mnd1 family PilJ PF13675.1 gi|156937997|ref|YP_001435793.1| - 0.0091 16.3 14.8 0.99 9.7 2.4 3.8 1 1 3 4 4 4 2 Type IV pili methyl-accepting chemotaxis transducer N-term DUF972 PF06156.8 gi|156937997|ref|YP_001435793.1| - 0.011 16.0 39.2 0.31 11.4 3.8 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF972) DUF1664 PF07889.7 gi|156937997|ref|YP_001435793.1| - 0.012 15.4 3.3 0.012 15.4 2.3 4.3 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.7 gi|156937997|ref|YP_001435793.1| - 0.013 15.3 13.5 0.12 12.1 0.4 3.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus zf-C4H2 PF10146.4 gi|156937997|ref|YP_001435793.1| - 0.015 15.3 16.4 0.015 15.3 11.4 3.3 1 1 1 2 2 1 0 Zinc finger-containing protein DUF211 PF02680.9 gi|156937997|ref|YP_001435793.1| - 0.015 15.0 1.6 0.041 13.6 0.1 2.4 2 1 0 2 2 1 0 Uncharacterized ArCR, COG1888 Snapin_Pallidin PF14712.1 gi|156937997|ref|YP_001435793.1| - 0.016 15.4 3.2 0.016 15.4 2.2 5.1 1 1 3 4 4 3 0 Snapin/Pallidin MscS_porin PF12795.2 gi|156937997|ref|YP_001435793.1| - 0.016 14.4 37.5 0.14 11.4 1.6 4.1 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain ALIX_LYPXL_bnd PF13949.1 gi|156937997|ref|YP_001435793.1| - 0.019 13.9 46.4 0.22 10.4 11.5 3.2 1 1 2 3 3 3 0 ALIX V-shaped domain binding to HIV Orthopox_A5L PF06193.6 gi|156937997|ref|YP_001435793.1| - 0.025 14.5 21.7 2.3 8.1 5.6 3.6 2 2 0 2 2 2 0 Orthopoxvirus A5L protein-like DUF2730 PF10805.3 gi|156937997|ref|YP_001435793.1| - 0.028 14.1 1.9 0.028 14.1 1.3 4.4 2 2 2 4 4 4 0 Protein of unknown function (DUF2730) Syntaxin PF00804.20 gi|156937997|ref|YP_001435793.1| - 0.029 14.5 38.4 0.95 9.6 6.2 3.9 2 2 1 3 3 3 0 Syntaxin IFT57 PF10498.4 gi|156937997|ref|YP_001435793.1| - 0.037 12.7 36.5 0.25 10.0 10.0 2.8 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 DUF948 PF06103.6 gi|156937997|ref|YP_001435793.1| - 0.06 13.2 13.2 0.22 11.4 0.3 4.0 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) ATG16 PF08614.6 gi|156937997|ref|YP_001435793.1| - 0.062 13.1 46.3 0.34 10.6 9.6 3.3 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) Filament PF00038.16 gi|156937997|ref|YP_001435793.1| - 0.064 12.7 45.7 0.044 13.2 4.4 3.1 2 1 1 3 3 3 0 Intermediate filament protein LOH1CR12 PF10158.4 gi|156937997|ref|YP_001435793.1| - 0.076 12.8 15.7 0.13 12.0 1.6 3.3 2 1 1 3 3 3 0 Tumour suppressor protein Bacillus_HBL PF05791.6 gi|156937997|ref|YP_001435793.1| - 0.08 12.3 25.9 0.019 14.3 1.8 4.1 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) WXG100 PF06013.7 gi|156937997|ref|YP_001435793.1| - 0.092 12.7 6.5 7.6 6.6 0.0 4.6 3 1 2 5 5 4 0 Proteins of 100 residues with WXG Med10 PF09748.4 gi|156937997|ref|YP_001435793.1| - 0.12 12.2 11.2 0.22 11.3 0.4 4.2 2 2 1 3 3 3 0 Transcription factor subunit Med10 of Mediator complex Flagellin_C PF00700.16 gi|156937997|ref|YP_001435793.1| - 0.16 12.1 2.0 0.78 9.9 0.3 2.9 2 1 0 2 2 2 0 Bacterial flagellin C-terminal helical region CENP-F_leu_zip PF10473.4 gi|156937997|ref|YP_001435793.1| - 0.17 11.7 55.4 0.7 9.7 5.2 3.6 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PspA_IM30 PF04012.7 gi|156937997|ref|YP_001435793.1| - 0.17 11.1 44.6 1.5 8.1 3.2 4.3 1 1 1 2 2 2 0 PspA/IM30 family LPP PF04728.8 gi|156937997|ref|YP_001435793.1| - 0.18 11.6 2.4 1.9 8.3 0.1 3.3 3 1 1 4 4 3 0 Lipoprotein leucine-zipper Halo_GVPC PF05465.8 gi|156937997|ref|YP_001435793.1| - 0.19 11.6 1.0 59 3.7 0.2 3.7 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat Mod_r PF07200.8 gi|156937997|ref|YP_001435793.1| - 0.19 11.6 38.6 0.14 12.0 8.8 3.6 1 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Dor1 PF04124.7 gi|156937997|ref|YP_001435793.1| - 0.2 10.0 27.5 7.7 4.8 14.0 2.7 1 1 2 3 3 3 0 Dor1-like family BLOC1_2 PF10046.4 gi|156937997|ref|YP_001435793.1| - 0.21 11.7 29.7 0.32 11.1 3.3 4.8 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_I PF06008.9 gi|156937997|ref|YP_001435793.1| - 0.23 10.7 33.0 0.031 13.6 8.8 2.3 1 1 1 2 2 2 0 Laminin Domain I DUF4201 PF13870.1 gi|156937997|ref|YP_001435793.1| - 0.23 10.8 48.7 0.19 11.1 14.0 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4201) FUSC PF04632.7 gi|156937997|ref|YP_001435793.1| - 0.3 9.4 13.6 0.67 8.3 8.2 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein family Hemerythrin PF01814.18 gi|156937997|ref|YP_001435793.1| - 0.5 10.5 24.1 14 5.8 0.9 4.4 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain TraF_2 PF13729.1 gi|156937997|ref|YP_001435793.1| - 0.52 9.0 1.7 1.4 7.6 0.1 2.2 2 0 0 2 2 2 0 F plasmid transfer operon, TraF, protein Tropomyosin_1 PF12718.2 gi|156937997|ref|YP_001435793.1| - 0.6 9.9 52.5 1.5 8.6 8.7 3.1 1 1 2 3 3 3 0 Tropomyosin like FliJ PF02050.11 gi|156937997|ref|YP_001435793.1| - 0.72 9.9 41.6 1.1 9.2 10.5 3.3 2 1 1 3 3 3 0 Flagellar FliJ protein MtrB PF05440.7 gi|156937997|ref|YP_001435793.1| - 0.73 9.9 5.4 22 5.1 0.1 3.9 4 0 0 4 4 3 0 Tetrahydromethanopterin S-methyltransferase subunit B ERM PF00769.14 gi|156937997|ref|YP_001435793.1| - 1.1 8.7 44.6 0.19 11.2 18.8 2.3 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Occludin_ELL PF07303.8 gi|156937997|ref|YP_001435793.1| - 1.5 9.6 30.4 7.5 7.3 6.4 4.6 1 1 4 5 5 4 0 Occludin homology domain CDC37_N PF03234.9 gi|156937997|ref|YP_001435793.1| - 1.5 9.1 34.8 0.095 13.0 3.7 3.5 1 1 3 4 4 4 0 Cdc37 N terminal kinase binding TPR_MLP1_2 PF07926.7 gi|156937997|ref|YP_001435793.1| - 1.5 8.5 45.9 4 7.1 2.1 4.3 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Acyl-CoA_dh_2 PF08028.6 gi|156937997|ref|YP_001435793.1| - 1.7 8.8 11.7 0.95 9.7 0.2 3.4 2 1 0 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain DUF812 PF05667.6 gi|156937997|ref|YP_001435793.1| - 2.2 6.7 41.4 0.73 8.2 5.3 4.0 1 1 2 4 4 4 0 Protein of unknown function (DUF812) ADIP PF11559.3 gi|156937997|ref|YP_001435793.1| - 2.5 7.9 44.4 0.56 10.1 3.7 3.6 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding HOOK PF05622.7 gi|156937997|ref|YP_001435793.1| - 2.7 5.6 45.3 1.1 6.9 14.8 2.4 1 1 0 2 2 2 0 HOOK protein Corona_S2 PF01601.11 gi|156937997|ref|YP_001435793.1| - 2.8 5.9 6.3 0.4 8.7 0.4 2.0 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein GLE1 PF07817.8 gi|156937997|ref|YP_001435793.1| - 2.9 6.7 11.5 2.6 6.8 0.4 2.8 2 1 1 3 3 3 0 GLE1-like protein Sigma70_ECF PF07638.6 gi|156937997|ref|YP_001435793.1| - 3 7.4 22.9 8.9 5.9 0.1 3.4 3 1 0 3 3 2 0 ECF sigma factor DUF2937 PF11157.3 gi|156937997|ref|YP_001435793.1| - 3.2 7.0 11.5 0.87 8.8 0.1 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF2937) Allexi_40kDa PF05549.6 gi|156937997|ref|YP_001435793.1| - 3.2 6.9 15.9 0.47 9.7 1.6 3.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein Herpes_U30 PF04523.8 gi|156937997|ref|YP_001435793.1| - 4.3 4.6 12.1 0.32 8.4 1.2 2.4 1 1 2 3 3 3 0 Herpes virus tegument protein U30 MutS_IV PF05190.13 gi|156937997|ref|YP_001435793.1| - 4.7 7.4 33.5 0.7 10.1 2.6 5.5 3 1 2 5 5 4 0 MutS family domain IV Lebercilin PF15619.1 gi|156937997|ref|YP_001435793.1| - 5 6.5 51.8 0.38 10.1 13.3 3.0 1 1 1 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease GAS PF13851.1 gi|156937997|ref|YP_001435793.1| - 5.5 6.1 54.9 2.3 7.3 6.6 3.3 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding RmuC PF02646.11 gi|156937997|ref|YP_001435793.1| - 6.5 5.4 28.8 0.019 13.8 2.4 3.6 1 1 2 3 3 3 0 RmuC family Atg14 PF10186.4 gi|156937997|ref|YP_001435793.1| - 6.6 5.5 50.1 77 2.0 14.4 3.4 1 1 1 2 2 1 0 UV radiation resistance protein and autophagy-related subunit 14 AlphaC_N PF08829.5 gi|156937997|ref|YP_001435793.1| - 7.6 5.8 9.4 2.8 7.2 2.3 2.5 2 0 0 2 2 2 0 Alpha C protein N terminal Fzo_mitofusin PF04799.8 gi|156937997|ref|YP_001435793.1| - 7.7 5.8 25.0 0.18 11.1 2.6 3.9 1 1 2 3 3 2 0 fzo-like conserved region MAD PF05557.8 gi|156937997|ref|YP_001435793.1| - 8.6 4.3 51.9 18 3.2 35.9 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein TMF_TATA_bd PF12325.3 gi|156937997|ref|YP_001435793.1| - 8.6 6.1 53.7 0.51 10.0 9.8 4.6 1 1 4 5 5 5 0 TATA element modulatory factor 1 TATA binding Fib_alpha PF08702.5 gi|156937997|ref|YP_001435793.1| - 8.7 6.4 28.9 0.31 11.1 4.2 3.5 1 1 3 5 5 5 0 Fibrinogen alpha/beta chain family ATP_bind_1 PF03029.12 gi|156937998|ref|YP_001435794.1| - 2.4e-53 181.1 0.0 2.8e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|156937998|ref|YP_001435794.1| - 2e-07 30.5 0.2 0.5 9.8 0.0 3.9 2 1 1 3 3 3 3 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.17 gi|156937998|ref|YP_001435794.1| - 0.00012 21.6 0.0 0.45 9.9 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|156937998|ref|YP_001435794.1| - 0.00027 20.4 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|156937998|ref|YP_001435794.1| - 0.00031 20.2 0.0 0.0031 16.9 0.0 2.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Gtr1_RagA PF04670.7 gi|156937998|ref|YP_001435794.1| - 0.00077 18.6 0.0 0.008 15.3 0.0 2.0 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region AAA_18 PF13238.1 gi|156937998|ref|YP_001435794.1| - 0.0026 18.0 0.0 0.0056 16.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|156937998|ref|YP_001435794.1| - 0.0028 18.4 0.0 0.005 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|156937998|ref|YP_001435794.1| - 0.0043 17.1 0.0 0.0098 16.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|156937998|ref|YP_001435794.1| - 0.0075 16.2 0.1 0.023 14.6 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|156937998|ref|YP_001435794.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|156937998|ref|YP_001435794.1| - 0.021 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|156937998|ref|YP_001435794.1| - 0.079 12.9 0.2 0.43 10.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|156937998|ref|YP_001435794.1| - 0.08 12.5 0.0 0.14 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|156937998|ref|YP_001435794.1| - 0.1 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|156937998|ref|YP_001435794.1| - 0.11 12.6 0.0 0.55 10.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase CBS PF00571.23 gi|156937999|ref|YP_001435795.1| - 5.2e-26 90.1 12.2 1.9e-12 46.7 0.1 4.2 5 0 0 5 5 5 3 CBS domain AsnC_trans_reg PF01037.16 gi|156937999|ref|YP_001435795.1| - 0.00045 19.8 0.0 0.00085 18.9 0.0 1.4 1 0 0 1 1 1 1 AsnC family GerE PF00196.14 gi|156937999|ref|YP_001435795.1| - 0.0069 15.6 0.0 0.02 14.1 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Cache_1 PF02743.13 gi|156937999|ref|YP_001435795.1| - 0.1 12.1 0.8 3.3 7.3 0.0 2.5 1 1 1 2 2 2 0 Cache domain HAUS2 PF15003.1 gi|156938000|ref|YP_001435796.1| - 0.0033 16.5 0.1 0.0047 16.0 0.0 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 2 DUF641 PF04859.7 gi|156938000|ref|YP_001435796.1| - 0.028 14.1 3.4 1 9.1 0.9 2.1 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) Fzo_mitofusin PF04799.8 gi|156938000|ref|YP_001435796.1| - 0.034 13.5 1.1 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 fzo-like conserved region AF0941-like PF14591.1 gi|156938000|ref|YP_001435796.1| - 0.036 14.1 3.7 0.2 11.7 1.1 2.2 2 0 0 2 2 2 0 AF0941-like She9_MDM33 PF05546.6 gi|156938000|ref|YP_001435796.1| - 0.042 13.3 1.7 0.38 10.2 0.4 2.0 2 0 0 2 2 2 0 She9 / Mdm33 family YliH PF10799.3 gi|156938000|ref|YP_001435796.1| - 0.048 13.3 0.0 0.065 12.9 0.0 1.1 1 0 0 1 1 1 0 Biofilm formation protein (YliH/bssR) ArsR PF09824.4 gi|156938000|ref|YP_001435796.1| - 0.048 12.9 0.9 0.11 11.8 0.2 1.8 2 0 0 2 2 2 0 ArsR transcriptional regulator TPR_MLP1_2 PF07926.7 gi|156938000|ref|YP_001435796.1| - 0.062 13.0 3.6 0.43 10.3 0.5 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein COX5A PF02284.11 gi|156938000|ref|YP_001435796.1| - 0.14 12.1 1.1 3.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Cytochrome c oxidase subunit Va P4Ha_N PF08336.6 gi|156938000|ref|YP_001435796.1| - 0.27 11.0 3.0 4.8 7.0 0.1 2.1 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF848 PF05852.6 gi|156938000|ref|YP_001435796.1| - 0.31 10.8 2.2 1.1 9.1 0.6 1.9 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Latarcin PF10279.4 gi|156938000|ref|YP_001435796.1| - 0.34 11.1 3.0 1.9 8.7 1.7 2.2 1 1 0 1 1 1 0 Latarcin precursor DUF2051 PF09738.4 gi|156938000|ref|YP_001435796.1| - 0.35 10.1 6.0 0.11 11.7 1.7 1.7 2 0 0 2 2 2 0 Double stranded RNA binding protein (DUF2051) BLOC1_2 PF10046.4 gi|156938000|ref|YP_001435796.1| - 0.52 10.4 4.9 3.4 7.8 0.1 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|156938000|ref|YP_001435796.1| - 0.98 8.9 7.0 5 6.6 4.9 1.8 1 1 0 1 1 1 0 IncA protein Med28 PF11594.3 gi|156938000|ref|YP_001435796.1| - 1.2 9.4 5.6 23 5.2 3.9 2.1 1 1 0 1 1 1 0 Mediator complex subunit 28 SPOB_a PF14689.1 gi|156938000|ref|YP_001435796.1| - 1.7 8.2 4.1 2.5 7.7 0.4 2.5 2 1 1 3 3 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain Prefoldin_2 PF01920.15 gi|156938000|ref|YP_001435796.1| - 1.8 8.3 8.9 16 5.3 3.8 2.2 2 0 0 2 2 2 0 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|156938000|ref|YP_001435796.1| - 3.2 7.6 10.9 2.4 8.0 3.0 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Tup_N PF08581.5 gi|156938000|ref|YP_001435796.1| - 3.3 7.9 10.5 25 5.1 4.6 2.8 2 1 0 2 2 2 0 Tup N-terminal DUF919 PF06034.6 gi|156938000|ref|YP_001435796.1| - 9.3 5.9 7.6 2.7 7.6 0.0 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) vATP-synt_AC39 PF01992.11 gi|156938001|ref|YP_001435797.1| - 5.4e-06 25.7 0.6 1.1e-05 24.7 0.4 1.6 1 1 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3142 PF11340.3 gi|156938001|ref|YP_001435797.1| - 0.08 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3142) YusW PF14039.1 gi|156938002|ref|YP_001435798.1| - 2.9e-05 24.2 3.6 2.9e-05 24.2 2.5 1.6 2 0 0 2 2 1 1 YusW-like protein Apolipoprotein PF01442.13 gi|156938002|ref|YP_001435798.1| - 0.00042 19.8 11.6 0.00061 19.3 8.0 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Borrelia_lipo_1 PF05714.6 gi|156938002|ref|YP_001435798.1| - 0.0018 17.4 6.5 0.0027 16.8 1.9 2.0 1 1 1 2 2 2 1 Borrelia burgdorferi virulent strain associated lipoprotein LPP PF04728.8 gi|156938002|ref|YP_001435798.1| - 0.012 15.4 0.0 0.97 9.2 0.0 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper TAN PF11640.3 gi|156938002|ref|YP_001435798.1| - 0.012 15.3 0.7 0.021 14.5 0.5 1.4 1 0 0 1 1 1 0 Telomere-length maintenance and DNA damage repair ApoLp-III PF07464.6 gi|156938002|ref|YP_001435798.1| - 0.013 15.5 12.9 0.021 14.8 8.9 1.3 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) GldM_N PF12081.3 gi|156938002|ref|YP_001435798.1| - 0.016 14.7 8.9 0.042 13.3 2.8 2.0 1 1 1 2 2 2 0 GldM N-terminal domain DUF2884 PF11101.3 gi|156938002|ref|YP_001435798.1| - 0.016 14.5 4.5 0.059 12.7 3.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) Baculo_PEP_C PF04513.7 gi|156938002|ref|YP_001435798.1| - 0.017 14.9 2.9 0.51 10.1 0.5 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus BAR PF03114.13 gi|156938002|ref|YP_001435798.1| - 0.017 14.6 7.9 0.029 13.8 5.5 1.4 1 1 0 1 1 1 0 BAR domain Fib_alpha PF08702.5 gi|156938002|ref|YP_001435798.1| - 0.02 14.9 3.7 0.028 14.5 2.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Cor1 PF04803.7 gi|156938002|ref|YP_001435798.1| - 0.024 14.3 0.9 0.024 14.3 0.6 2.3 1 1 1 2 2 2 0 Cor1/Xlr/Xmr conserved region Mitofilin PF09731.4 gi|156938002|ref|YP_001435798.1| - 0.026 13.1 19.4 0.03 13.0 13.4 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein SpaB_C PF14028.1 gi|156938002|ref|YP_001435798.1| - 0.029 13.9 2.2 0.032 13.8 1.5 1.1 1 0 0 1 1 1 0 SpaB C-terminal domain Med11 PF10280.4 gi|156938002|ref|YP_001435798.1| - 0.029 14.3 3.7 0.072 13.1 2.2 2.0 1 1 1 2 2 2 0 Mediator complex protein DUF948 PF06103.6 gi|156938002|ref|YP_001435798.1| - 0.032 14.0 0.7 0.12 12.2 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) GvpL_GvpF PF06386.6 gi|156938002|ref|YP_001435798.1| - 0.033 13.7 9.9 0.036 13.6 6.9 1.0 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Serine_rich PF08824.5 gi|156938002|ref|YP_001435798.1| - 0.037 13.7 1.7 0.058 13.1 1.2 1.4 1 1 0 1 1 1 0 Serine rich protein interaction domain DUF883 PF05957.8 gi|156938002|ref|YP_001435798.1| - 0.037 14.4 12.6 2.5 8.5 5.3 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) ISG65-75 PF11727.3 gi|156938002|ref|YP_001435798.1| - 0.044 12.8 8.1 0.061 12.3 5.6 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein STAT_alpha PF01017.15 gi|156938002|ref|YP_001435798.1| - 0.047 13.4 6.3 0.072 12.7 4.3 1.3 1 1 0 1 1 1 0 STAT protein, all-alpha domain Sec23_helical PF04815.10 gi|156938002|ref|YP_001435798.1| - 0.05 13.0 0.2 0.13 11.7 0.1 1.7 2 0 0 2 2 1 0 Sec23/Sec24 helical domain BLOC1_2 PF10046.4 gi|156938002|ref|YP_001435798.1| - 0.05 13.7 10.2 1 9.5 0.2 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ZYG-11_interact PF05884.7 gi|156938002|ref|YP_001435798.1| - 0.061 12.4 0.4 0.063 12.3 0.3 1.1 1 0 0 1 1 1 0 Interactor of ZYG-11 CorA PF01544.13 gi|156938002|ref|YP_001435798.1| - 0.07 12.1 4.1 0.083 11.9 2.8 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein RRP7 PF12923.2 gi|156938002|ref|YP_001435798.1| - 0.07 13.1 9.4 0.082 12.9 6.5 1.1 1 0 0 1 1 1 0 Ribosomal RNA-processing protein 7 (RRP7) HK97-gp10_like PF04883.7 gi|156938002|ref|YP_001435798.1| - 0.072 14.0 9.7 0.18 12.7 1.7 2.6 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component FliD_C PF07195.7 gi|156938002|ref|YP_001435798.1| - 0.076 12.3 3.8 0.099 11.9 2.7 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus V-ATPase_G PF03179.10 gi|156938002|ref|YP_001435798.1| - 0.079 13.2 13.6 0.11 12.7 9.4 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Vinculin PF01044.14 gi|156938002|ref|YP_001435798.1| - 0.095 10.6 4.4 0.11 10.4 3.0 1.2 1 1 0 1 1 1 0 Vinculin family Fungal_trans_2 PF11951.3 gi|156938002|ref|YP_001435798.1| - 0.11 11.0 0.8 0.15 10.6 0.5 1.3 1 0 0 1 1 1 0 Fungal specific transcription factor domain Dynamin_M PF01031.15 gi|156938002|ref|YP_001435798.1| - 0.11 11.2 2.8 1.3 7.7 1.9 2.0 1 1 0 1 1 1 0 Dynamin central region DUF2570 PF10828.3 gi|156938002|ref|YP_001435798.1| - 0.12 11.9 11.0 0.025 14.1 3.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) DUF2450 PF10475.4 gi|156938002|ref|YP_001435798.1| - 0.13 11.1 3.6 1.3 7.8 2.5 1.9 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) Tweety PF04906.8 gi|156938002|ref|YP_001435798.1| - 0.13 10.6 0.8 0.15 10.4 0.6 1.3 1 0 0 1 1 1 0 Tweety WXG100 PF06013.7 gi|156938002|ref|YP_001435798.1| - 0.13 12.2 4.0 3.4 7.7 1.0 2.6 1 1 1 2 2 2 0 Proteins of 100 residues with WXG DUF4071 PF13281.1 gi|156938002|ref|YP_001435798.1| - 0.13 11.0 2.8 0.17 10.6 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) AAA_32 PF13654.1 gi|156938002|ref|YP_001435798.1| - 0.14 10.7 11.3 0.78 8.3 7.4 1.8 1 1 0 1 1 1 0 AAA domain Gp-FAR-1 PF05823.7 gi|156938002|ref|YP_001435798.1| - 0.15 12.0 8.5 0.19 11.7 5.9 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF445 PF04286.7 gi|156938002|ref|YP_001435798.1| - 0.15 11.5 5.8 0.2 11.1 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) CMAS PF02353.15 gi|156938002|ref|YP_001435798.1| - 0.15 11.0 1.2 0.23 10.5 0.3 1.6 1 1 1 2 2 2 0 Mycolic acid cyclopropane synthetase DUF1824 PF08854.5 gi|156938002|ref|YP_001435798.1| - 0.15 11.6 2.1 0.19 11.3 0.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF1824) Zw10 PF06248.8 gi|156938002|ref|YP_001435798.1| - 0.17 10.0 4.5 0.18 9.9 3.1 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Erythro_esteras PF05139.9 gi|156938002|ref|YP_001435798.1| - 0.17 11.0 5.0 0.25 10.4 3.5 1.3 1 0 0 1 1 1 0 Erythromycin esterase Phasin PF05597.6 gi|156938002|ref|YP_001435798.1| - 0.18 11.5 9.9 0.11 12.2 3.4 1.8 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) OmpH PF03938.9 gi|156938002|ref|YP_001435798.1| - 0.19 11.6 14.5 0.29 11.0 10.0 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HSBP1 PF06825.7 gi|156938002|ref|YP_001435798.1| - 0.2 11.2 3.0 2.1 8.0 0.0 2.9 3 1 0 3 3 2 0 Heat shock factor binding protein 1 Vps16_N PF04841.8 gi|156938002|ref|YP_001435798.1| - 0.21 10.0 2.2 0.24 9.8 1.6 1.1 1 0 0 1 1 1 0 Vps16, N-terminal region DUF4407 PF14362.1 gi|156938002|ref|YP_001435798.1| - 0.22 10.4 7.3 0.25 10.2 5.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Spectrin PF00435.16 gi|156938002|ref|YP_001435798.1| - 0.25 11.6 9.7 0.47 10.7 6.7 1.5 1 1 0 1 1 1 0 Spectrin repeat DUF3837 PF12939.2 gi|156938002|ref|YP_001435798.1| - 0.26 11.3 4.6 0.25 11.3 2.1 1.7 1 1 1 2 2 1 0 Domain of unknown function (DUF3837) RHD3 PF05879.7 gi|156938002|ref|YP_001435798.1| - 0.26 9.1 7.4 0.29 8.9 5.1 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) Cep57_MT_bd PF06657.8 gi|156938002|ref|YP_001435798.1| - 0.26 11.2 12.3 0.18 11.7 5.6 2.2 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 CK2S PF15011.1 gi|156938002|ref|YP_001435798.1| - 0.28 10.9 4.8 1.2 8.9 0.7 2.3 1 1 1 2 2 2 0 Casein Kinase 2 substrate BAG PF02179.11 gi|156938002|ref|YP_001435798.1| - 0.28 11.3 8.5 0.74 9.9 5.9 1.8 1 1 0 1 1 1 0 BAG domain Orthopox_A5L PF06193.6 gi|156938002|ref|YP_001435798.1| - 0.28 11.1 4.0 0.95 9.3 2.8 1.7 1 1 0 1 1 1 0 Orthopoxvirus A5L protein-like ImcF-related_N PF14331.1 gi|156938002|ref|YP_001435798.1| - 0.29 10.0 5.3 0.47 9.3 3.6 1.5 1 1 0 1 1 1 0 ImcF-related N-terminal domain Drf_FH3 PF06367.11 gi|156938002|ref|YP_001435798.1| - 0.29 10.4 9.1 0.12 11.7 2.3 2.0 1 1 0 2 2 2 0 Diaphanous FH3 Domain DUF4456 PF14644.1 gi|156938002|ref|YP_001435798.1| - 0.29 10.3 7.8 2.3 7.4 5.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4456) RPW8 PF05659.6 gi|156938002|ref|YP_001435798.1| - 0.3 10.6 3.0 0.48 9.9 2.0 1.5 1 1 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 AAA_13 PF13166.1 gi|156938002|ref|YP_001435798.1| - 0.33 9.3 9.2 0.42 9.0 6.4 1.1 1 0 0 1 1 1 0 AAA domain PPDK_N PF01326.14 gi|156938002|ref|YP_001435798.1| - 0.33 9.9 3.9 0.6 9.1 2.5 1.5 1 1 1 2 2 2 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TMPIT PF07851.8 gi|156938002|ref|YP_001435798.1| - 0.34 9.9 6.0 0.17 10.8 2.1 1.6 1 1 1 2 2 2 0 TMPIT-like protein ECH PF00378.15 gi|156938002|ref|YP_001435798.1| - 0.34 9.9 3.1 0.68 9.0 1.8 1.7 1 1 1 2 2 2 0 Enoyl-CoA hydratase/isomerase family HD_assoc PF13286.1 gi|156938002|ref|YP_001435798.1| - 0.34 11.1 2.6 2.6 8.3 0.8 2.1 2 0 0 2 2 2 0 Phosphohydrolase-associated domain DUF3584 PF12128.3 gi|156938002|ref|YP_001435798.1| - 0.35 8.1 11.1 0.39 7.9 7.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PaaX_C PF08223.6 gi|156938002|ref|YP_001435798.1| - 0.36 10.5 3.6 1.3 8.7 0.0 2.2 1 1 1 2 2 2 0 PaaX-like protein C-terminal domain ATP-synt_B PF00430.13 gi|156938002|ref|YP_001435798.1| - 0.36 10.6 15.7 1.2 8.9 10.9 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) AbiH PF14253.1 gi|156938002|ref|YP_001435798.1| - 0.38 10.3 4.3 0.62 9.6 3.0 1.4 1 1 0 1 1 1 0 Bacteriophage abortive infection AbiH RmuC PF02646.11 gi|156938002|ref|YP_001435798.1| - 0.38 9.5 9.3 1.1 8.0 0.7 2.0 1 1 1 2 2 2 0 RmuC family DivIVA PF05103.8 gi|156938002|ref|YP_001435798.1| - 0.42 10.6 13.1 1.1 9.3 8.9 1.7 1 1 0 1 1 1 0 DivIVA protein DNA_primase_lrg PF04104.9 gi|156938002|ref|YP_001435798.1| - 0.43 9.8 5.2 0.74 9.0 3.3 1.6 1 1 1 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit COG2 PF06148.6 gi|156938002|ref|YP_001435798.1| - 0.44 10.4 9.0 26 4.7 2.2 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1525 PF07511.6 gi|156938002|ref|YP_001435798.1| - 0.45 10.5 5.1 0.9 9.5 2.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1525) DUF4416 PF14385.1 gi|156938002|ref|YP_001435798.1| - 0.47 10.1 2.4 0.57 9.8 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4416) DUF4404 PF14357.1 gi|156938002|ref|YP_001435798.1| - 0.5 10.8 12.1 2.1 8.8 5.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF2317 PF10079.4 gi|156938002|ref|YP_001435798.1| - 0.53 8.8 9.6 0.74 8.3 6.6 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF885 PF05960.6 gi|156938002|ref|YP_001435798.1| - 0.56 9.3 5.8 0.62 9.1 4.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Sec66 PF09802.4 gi|156938002|ref|YP_001435798.1| - 0.56 9.5 5.0 0.59 9.4 2.1 1.8 1 1 1 2 2 2 0 Preprotein translocase subunit Sec66 FlgN PF05130.7 gi|156938002|ref|YP_001435798.1| - 0.58 10.4 12.3 1.4 9.1 8.5 1.6 1 1 0 1 1 1 0 FlgN protein DUF4085 PF13315.1 gi|156938002|ref|YP_001435798.1| - 0.64 9.3 5.5 1.2 8.5 3.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4085) AF0941-like PF14591.1 gi|156938002|ref|YP_001435798.1| - 0.65 10.0 12.2 49 3.9 8.5 2.8 1 1 0 1 1 1 0 AF0941-like DUF2383 PF09537.5 gi|156938002|ref|YP_001435798.1| - 0.7 10.1 9.2 0.99 9.6 2.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) YtxH PF12732.2 gi|156938002|ref|YP_001435798.1| - 0.76 10.1 11.0 4.1e+02 1.4 7.6 2.7 1 1 0 1 1 1 0 YtxH-like protein DUF4659 PF15558.1 gi|156938002|ref|YP_001435798.1| - 0.76 8.3 15.0 0.89 8.1 10.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4659) DUF4226 PF10774.4 gi|156938002|ref|YP_001435798.1| - 0.77 9.8 6.3 0.66 10.0 2.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4226) UCH PF00443.24 gi|156938002|ref|YP_001435798.1| - 0.79 8.7 3.5 0.87 8.6 2.4 1.0 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase CENP-H PF05837.7 gi|156938002|ref|YP_001435798.1| - 0.8 9.9 11.2 0.35 11.0 3.4 2.0 1 1 1 2 2 2 0 Centromere protein H (CENP-H) DUF342 PF03961.8 gi|156938002|ref|YP_001435798.1| - 0.91 7.8 10.4 1.3 7.4 7.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Laminin_II PF06009.7 gi|156938002|ref|YP_001435798.1| - 0.92 9.2 10.1 0.61 9.8 3.2 2.0 1 1 1 2 2 2 0 Laminin Domain II KfrA_N PF11740.3 gi|156938002|ref|YP_001435798.1| - 0.94 9.9 14.7 1.7 9.0 3.3 2.1 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term DUF3135 PF11333.3 gi|156938002|ref|YP_001435798.1| - 1 9.5 5.0 0.41 10.8 0.9 2.1 2 2 0 2 2 1 0 Protein of unknown function (DUF3135) HSCB_C PF07743.8 gi|156938002|ref|YP_001435798.1| - 1.1 9.8 16.5 13 6.3 0.6 2.9 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain KIP1 PF07765.7 gi|156938002|ref|YP_001435798.1| - 1.1 9.1 3.9 2.9 7.7 1.1 2.4 1 1 1 2 2 2 0 KIP1-like protein HrcA PF01628.16 gi|156938002|ref|YP_001435798.1| - 1.2 8.6 6.2 1.6 8.2 1.9 1.9 1 1 1 2 2 2 0 HrcA protein C terminal domain Phage_GPO PF05929.6 gi|156938002|ref|YP_001435798.1| - 1.3 8.2 6.3 1 8.5 3.4 1.3 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4618 PF15397.1 gi|156938002|ref|YP_001435798.1| - 1.3 8.2 11.4 3.7 6.8 7.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) RRF PF01765.14 gi|156938002|ref|YP_001435798.1| - 1.4 8.3 10.6 0.9 8.9 4.3 1.9 1 1 1 2 2 2 0 Ribosome recycling factor Sec5 PF15469.1 gi|156938002|ref|YP_001435798.1| - 1.5 8.4 7.3 4.2 7.0 5.0 1.8 1 1 0 1 1 1 0 Exocyst complex component Sec5 ALMT PF11744.3 gi|156938002|ref|YP_001435798.1| - 1.6 7.3 4.4 1.7 7.1 3.0 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter VitK2_biosynth PF02621.9 gi|156938002|ref|YP_001435798.1| - 1.6 7.8 5.7 5 6.2 4.0 1.8 1 1 0 1 1 1 0 Menaquinone biosynthesis Mnd1 PF03962.10 gi|156938002|ref|YP_001435798.1| - 1.6 8.3 12.2 6.2 6.4 8.4 1.7 1 1 0 1 1 1 0 Mnd1 family Prominin PF05478.6 gi|156938002|ref|YP_001435798.1| - 1.7 6.0 5.7 2 5.8 4.0 1.1 1 0 0 1 1 1 0 Prominin Peptidase_S46 PF10459.4 gi|156938002|ref|YP_001435798.1| - 1.8 6.8 6.6 2.4 6.4 4.6 1.1 1 0 0 1 1 1 0 Peptidase S46 PNPase PF03726.9 gi|156938002|ref|YP_001435798.1| - 1.8 8.8 6.8 7.2 6.9 4.0 2.2 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain DUF1311 PF07007.7 gi|156938002|ref|YP_001435798.1| - 1.9 8.6 8.6 4.2 7.5 4.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1311) Macoilin PF09726.4 gi|156938002|ref|YP_001435798.1| - 2.1 6.5 13.0 2.4 6.3 9.0 1.0 1 0 0 1 1 1 0 Transmembrane protein PRKCSH-like PF12999.2 gi|156938002|ref|YP_001435798.1| - 2.3 7.7 6.4 2.2 7.8 1.3 1.9 1 1 1 2 2 2 0 Glucosidase II beta subunit-like DUF2935 PF11155.3 gi|156938002|ref|YP_001435798.1| - 2.3 8.3 5.3 7.8 6.6 3.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) DUF3829 PF12889.2 gi|156938002|ref|YP_001435798.1| - 2.3 7.3 11.7 10 5.2 8.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) EAP30 PF04157.11 gi|156938002|ref|YP_001435798.1| - 2.3 7.3 9.3 5.4 6.0 6.4 1.7 1 1 0 1 1 1 0 EAP30/Vps36 family APG6 PF04111.7 gi|156938002|ref|YP_001435798.1| - 3 6.8 13.4 3.7 6.5 9.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Atg14 PF10186.4 gi|156938002|ref|YP_001435798.1| - 3.1 6.6 8.9 4 6.3 6.2 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Ded_cyto PF06920.8 gi|156938002|ref|YP_001435798.1| - 3.2 7.0 7.6 6.8 5.9 5.3 1.6 1 1 0 1 1 1 0 Dedicator of cytokinesis HSP70 PF00012.15 gi|156938002|ref|YP_001435798.1| - 3.3 5.4 7.1 4 5.2 4.9 1.2 1 0 0 1 1 1 0 Hsp70 protein EntA_Immun PF08951.5 gi|156938002|ref|YP_001435798.1| - 3.6 7.8 9.2 1.6 8.9 2.7 2.5 1 1 0 2 2 2 0 Enterocin A Immunity Sds3 PF08598.6 gi|156938002|ref|YP_001435798.1| - 3.8 6.9 10.6 5.7 6.4 0.1 2.4 2 1 0 2 2 2 0 Sds3-like FlaC_arch PF05377.6 gi|156938002|ref|YP_001435798.1| - 4.8 7.1 8.2 3 7.8 0.5 2.9 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Sas10_Utp3 PF04000.10 gi|156938002|ref|YP_001435798.1| - 5.2 7.3 10.1 8.8e+02 0.1 7.0 2.8 1 1 0 1 1 1 0 Sas10/Utp3/C1D family DUF1451 PF07295.6 gi|156938002|ref|YP_001435798.1| - 6.1 6.6 7.6 11 5.7 5.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) SICA_alpha PF12887.2 gi|156938002|ref|YP_001435798.1| - 6.2 6.5 8.6 5.3 6.7 3.1 2.4 1 1 2 3 3 3 0 SICA extracellular alpha domain DUF2203 PF09969.4 gi|156938002|ref|YP_001435798.1| - 6.4 7.0 6.9 53 4.0 4.8 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) TroA PF01297.12 gi|156938002|ref|YP_001435798.1| - 6.8 5.8 8.2 12 5.0 0.8 2.7 1 1 2 3 3 3 0 Periplasmic solute binding protein family FCH PF00611.18 gi|156938002|ref|YP_001435798.1| - 7.3 6.8 10.3 13 6.0 3.4 2.2 1 1 2 3 3 3 0 Fes/CIP4, and EFC/F-BAR homology domain PhoU PF01895.14 gi|156938002|ref|YP_001435798.1| - 9.4 6.7 7.3 7.2 7.1 1.3 2.2 1 1 1 2 2 2 0 PhoU domain DUF190 PF02641.10 gi|156938004|ref|YP_001435800.1| - 3.6e-19 68.4 0.4 3.8e-19 68.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 DUF2179 PF10035.4 gi|156938004|ref|YP_001435800.1| - 0.0061 16.1 3.8 0.03 13.9 2.6 2.1 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2179) ABC_tran PF00005.22 gi|156938006|ref|YP_001435802.1| - 1.2e-25 90.4 0.0 1.5e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156938006|ref|YP_001435802.1| - 2.7e-11 43.9 0.0 4e-05 23.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156938006|ref|YP_001435802.1| - 2.3e-09 36.8 0.0 4.8e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|156938006|ref|YP_001435802.1| - 5.9e-05 22.9 0.0 8.3e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|156938006|ref|YP_001435802.1| - 6.8e-05 22.3 0.1 0.00016 21.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|156938006|ref|YP_001435802.1| - 0.00067 19.1 0.1 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|156938006|ref|YP_001435802.1| - 0.00091 20.0 0.1 0.0015 19.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|156938006|ref|YP_001435802.1| - 0.0024 16.4 0.4 0.81 8.0 0.0 2.0 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|156938006|ref|YP_001435802.1| - 0.0053 15.9 0.0 0.0077 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|156938006|ref|YP_001435802.1| - 0.011 15.9 0.1 0.56 10.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|156938006|ref|YP_001435802.1| - 0.024 14.9 0.1 0.046 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|156938006|ref|YP_001435802.1| - 0.037 13.9 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|156938006|ref|YP_001435802.1| - 0.047 13.0 0.0 4.8 6.5 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_22 PF13401.1 gi|156938006|ref|YP_001435802.1| - 0.06 13.4 0.1 0.22 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|156938006|ref|YP_001435802.1| - 0.13 11.9 0.1 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) UPF0051 PF01458.12 gi|156938007|ref|YP_001435803.1| - 1.3e-59 201.4 0.0 1.7e-59 201.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Molydop_binding PF01568.16 gi|156938008|ref|YP_001435804.1| - 5.7e-05 22.8 0.4 0.08 12.7 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain PGC7_Stella PF15549.1 gi|156938008|ref|YP_001435804.1| - 0.16 11.9 1.5 0.24 11.3 1.0 1.2 1 0 0 1 1 1 0 PGC7/Stella/Dppa3 domain Voltage_CLC PF00654.15 gi|156938009|ref|YP_001435805.1| - 5.6e-42 144.0 35.1 6.7e-41 140.4 19.0 2.1 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|156938009|ref|YP_001435805.1| - 1.6e-18 66.2 3.7 3.2e-09 36.4 0.1 2.5 2 0 0 2 2 2 2 CBS domain ATPase_gene1 PF09527.5 gi|156938009|ref|YP_001435805.1| - 0.0045 16.7 4.0 0.0045 16.7 2.8 4.7 6 0 0 6 6 6 1 Putative F0F1-ATPase subunit (ATPase_gene1) DUF1847 PF08901.6 gi|156938009|ref|YP_001435805.1| - 0.021 14.3 0.2 0.042 13.3 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1847) Proteasome PF00227.21 gi|156938010|ref|YP_001435806.1| - 0.051 12.8 0.5 0.061 12.6 0.4 1.0 1 0 0 1 1 1 0 Proteasome subunit UPF0203 PF05254.7 gi|156938010|ref|YP_001435806.1| - 0.17 11.7 0.9 0.23 11.3 0.6 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0203) Radial_spoke_3 PF06098.6 gi|156938010|ref|YP_001435806.1| - 1.6 7.6 5.7 1.6 7.6 4.0 1.0 1 0 0 1 1 1 0 Radial spoke protein 3 Y_phosphatase PF00102.22 gi|156938012|ref|YP_001435808.1| - 0.0075 15.6 0.0 0.0087 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase B5 PF03484.10 gi|156938013|ref|YP_001435809.1| - 2.4e-12 46.4 0.0 1.5e-10 40.7 0.0 2.9 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|156938013|ref|YP_001435809.1| - 1.2e-08 34.5 0.0 2.1e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|156938014|ref|YP_001435810.1| - 1.1e-79 267.2 0.0 1.3e-79 266.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|156938014|ref|YP_001435810.1| - 2.4e-07 29.8 0.9 0.02 13.7 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) TrmB PF01978.14 gi|156938014|ref|YP_001435810.1| - 0.0025 17.4 2.9 0.01 15.4 0.6 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|156938014|ref|YP_001435810.1| - 0.0036 17.0 4.9 0.0058 16.4 0.3 3.5 4 1 1 5 5 5 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|156938014|ref|YP_001435810.1| - 0.052 13.2 0.2 0.2 11.3 0.1 2.0 2 0 0 2 2 2 0 MarR family PadR PF03551.9 gi|156938014|ref|YP_001435810.1| - 0.16 11.7 0.8 1.8 8.3 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|156938014|ref|YP_001435810.1| - 0.16 11.8 2.6 0.72 9.8 0.4 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Gln-synt_C PF00120.19 gi|156938015|ref|YP_001435811.1| - 4.7e-97 324.1 0.1 6e-97 323.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|156938015|ref|YP_001435811.1| - 4.1e-21 74.3 0.0 7.8e-21 73.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain FeoA PF04023.9 gi|156938016|ref|YP_001435812.1| - 2.9e-19 68.7 0.5 3.2e-19 68.6 0.3 1.0 1 0 0 1 1 1 1 FeoA domain Antitoxin-MazE PF04014.13 gi|156938016|ref|YP_001435812.1| - 0.16 11.7 0.6 0.53 10.0 0.3 2.2 1 1 1 2 2 2 0 Antidote-toxin recognition MazE DUF1469 PF07332.6 gi|156938017|ref|YP_001435813.1| - 5.6e-05 22.8 0.4 7.7e-05 22.4 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) His_Phos_1 PF00300.17 gi|156938018|ref|YP_001435814.1| - 1.1e-13 51.5 0.0 1.4e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Baculo_PEP_C PF04513.7 gi|156938020|ref|YP_001435816.1| - 0.01 15.6 0.8 0.014 15.2 0.6 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Drf_FH3 PF06367.11 gi|156938020|ref|YP_001435816.1| - 0.017 14.5 0.8 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Diaphanous FH3 Domain DUF1664 PF07889.7 gi|156938020|ref|YP_001435816.1| - 0.39 10.5 4.6 8.3 6.2 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Fzo_mitofusin PF04799.8 gi|156938020|ref|YP_001435816.1| - 0.56 9.5 4.1 1.5 8.2 0.1 2.1 1 1 1 2 2 2 0 fzo-like conserved region FlaC_arch PF05377.6 gi|156938020|ref|YP_001435816.1| - 0.57 10.1 3.0 1.2 9.0 0.0 2.7 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) HSCB_C PF07743.8 gi|156938020|ref|YP_001435816.1| - 0.66 10.4 3.1 0.71 10.3 0.2 2.2 2 1 1 3 3 3 0 HSCB C-terminal oligomerisation domain Flavin_Reduct PF01613.13 gi|156938022|ref|YP_001435818.1| - 2.3e-24 86.0 0.0 2.7e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.7 gi|156938022|ref|YP_001435818.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Aldolase_II PF00596.16 gi|156938023|ref|YP_001435819.1| - 1.5e-34 119.2 0.0 1.7e-34 119.0 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Glyco_trans_4_2 PF13477.1 gi|156938023|ref|YP_001435819.1| - 0.092 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like CxxCxxCC PF03692.10 gi|156938024|ref|YP_001435820.1| - 1.1e-07 32.2 0.1 1.4e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.3 gi|156938024|ref|YP_001435820.1| - 0.0023 17.4 0.1 0.0028 17.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3109) MCR_D PF02505.9 gi|156938024|ref|YP_001435820.1| - 0.15 11.6 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein D Fer4_7 PF12838.2 gi|156938025|ref|YP_001435821.1| - 3e-09 37.1 3.4 8.9e-07 29.1 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156938025|ref|YP_001435821.1| - 4.3e-09 35.6 1.8 4.3e-09 35.6 1.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156938025|ref|YP_001435821.1| - 1.7e-07 30.8 7.1 2.5e-07 30.4 4.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156938025|ref|YP_001435821.1| - 6.8e-07 28.8 1.1 6.8e-07 28.8 0.7 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156938025|ref|YP_001435821.1| - 3.2e-06 27.0 2.4 0.01 15.8 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156938025|ref|YP_001435821.1| - 8.9e-06 25.3 2.4 8.9e-06 25.3 1.7 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|156938025|ref|YP_001435821.1| - 4.9e-05 23.7 1.2 4.9e-05 23.7 0.8 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|156938025|ref|YP_001435821.1| - 7.3e-05 22.5 5.9 0.00011 21.9 0.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156938025|ref|YP_001435821.1| - 9.2e-05 22.6 9.7 0.00019 21.6 6.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156938025|ref|YP_001435821.1| - 0.00012 22.7 10.4 0.0036 17.9 0.6 2.1 1 1 3 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|156938025|ref|YP_001435821.1| - 0.00018 21.8 16.0 0.0004 20.7 2.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|156938025|ref|YP_001435821.1| - 0.00058 19.7 0.3 0.0007 19.4 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156938025|ref|YP_001435821.1| - 0.0022 18.3 10.2 0.05 13.9 0.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156938025|ref|YP_001435821.1| - 0.0026 17.9 2.7 0.0026 17.9 1.9 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|156938025|ref|YP_001435821.1| - 0.0088 16.4 1.4 0.0088 16.4 1.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|156938025|ref|YP_001435821.1| - 0.076 13.4 8.9 0.087 13.2 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Stig1 PF04885.8 gi|156938025|ref|YP_001435821.1| - 2.8 8.1 7.5 3.5 7.8 5.2 1.1 1 0 0 1 1 1 0 Stigma-specific protein, Stig1 V4R PF02830.13 gi|156938026|ref|YP_001435822.1| - 0.0098 15.7 0.2 0.044 13.6 0.0 2.0 1 1 1 2 2 2 1 V4R domain UCH PF00443.24 gi|156938027|ref|YP_001435823.1| - 0.029 13.5 0.1 0.037 13.1 0.1 1.2 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase DUF3106 PF11304.3 gi|156938027|ref|YP_001435823.1| - 0.068 13.5 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) ATC_hydrolase PF14196.1 gi|156938030|ref|YP_001435826.1| - 0.00027 21.3 1.4 0.0099 16.2 1.6 2.1 2 0 0 2 2 2 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase TnpW PF14202.1 gi|156938030|ref|YP_001435826.1| - 0.1 12.2 0.3 0.21 11.2 0.2 1.5 1 0 0 1 1 1 0 Transposon-encoded protein TnpW T2SE PF00437.15 gi|156938032|ref|YP_001435828.1| - 8.9e-13 47.7 0.1 1.8e-12 46.7 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|156938032|ref|YP_001435828.1| - 2.7e-05 24.4 0.2 0.00046 20.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|156938032|ref|YP_001435828.1| - 5.4e-05 24.0 0.0 0.00023 21.9 0.0 2.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|156938032|ref|YP_001435828.1| - 0.00078 18.5 0.0 0.0018 17.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|156938032|ref|YP_001435828.1| - 0.00083 19.3 0.0 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|156938032|ref|YP_001435828.1| - 0.00097 19.0 0.0 0.0078 16.1 0.0 2.5 3 0 0 3 3 2 1 AAA domain ArgK PF03308.11 gi|156938032|ref|YP_001435828.1| - 0.0014 17.4 0.0 0.0037 16.0 0.0 1.6 1 0 0 1 1 1 1 ArgK protein AAA_28 PF13521.1 gi|156938032|ref|YP_001435828.1| - 0.0018 18.2 0.0 0.0047 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|156938032|ref|YP_001435828.1| - 0.0025 17.4 1.1 0.0064 16.0 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|156938032|ref|YP_001435828.1| - 0.003 16.9 0.0 0.0062 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|156938032|ref|YP_001435828.1| - 0.0033 16.8 0.1 0.012 15.0 0.0 1.9 1 1 1 2 2 2 1 Thymidylate kinase AAA_19 PF13245.1 gi|156938032|ref|YP_001435828.1| - 0.0039 16.9 0.0 0.013 15.2 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain KTI12 PF08433.5 gi|156938032|ref|YP_001435828.1| - 0.0044 16.2 0.0 0.0075 15.5 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 IstB_IS21 PF01695.12 gi|156938032|ref|YP_001435828.1| - 0.0045 16.4 0.0 0.0078 15.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|156938032|ref|YP_001435828.1| - 0.0053 16.2 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family ATP_bind_1 PF03029.12 gi|156938032|ref|YP_001435828.1| - 0.0075 15.8 0.1 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|156938032|ref|YP_001435828.1| - 0.013 15.1 0.0 0.034 13.7 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|156938032|ref|YP_001435828.1| - 0.013 15.6 0.0 0.042 13.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|156938032|ref|YP_001435828.1| - 0.013 15.3 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|156938032|ref|YP_001435828.1| - 0.018 15.3 0.0 0.057 13.7 0.0 1.9 2 0 0 2 2 1 0 ABC transporter AAA_29 PF13555.1 gi|156938032|ref|YP_001435828.1| - 0.026 14.0 0.0 0.23 10.9 0.0 2.4 3 0 0 3 3 2 0 P-loop containing region of AAA domain RuvB_N PF05496.7 gi|156938032|ref|YP_001435828.1| - 0.033 13.2 0.1 0.26 10.2 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|156938032|ref|YP_001435828.1| - 0.037 13.7 0.1 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|156938032|ref|YP_001435828.1| - 0.037 13.5 0.0 0.1 12.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.24 gi|156938032|ref|YP_001435828.1| - 0.038 14.2 0.3 0.16 12.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|156938032|ref|YP_001435828.1| - 0.039 13.5 0.0 0.081 12.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.18 gi|156938032|ref|YP_001435828.1| - 0.04 13.8 0.0 0.094 12.6 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase KaiC PF06745.8 gi|156938032|ref|YP_001435828.1| - 0.045 12.8 0.2 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 KaiC SRP54 PF00448.17 gi|156938032|ref|YP_001435828.1| - 0.047 13.1 0.0 0.085 12.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|156938032|ref|YP_001435828.1| - 0.049 13.3 1.2 0.18 11.4 0.0 2.6 3 0 0 3 3 2 0 NTPase CbiA PF01656.18 gi|156938032|ref|YP_001435828.1| - 0.052 12.9 0.0 0.4 10.0 0.0 2.3 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.7 gi|156938032|ref|YP_001435828.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.4 gi|156938032|ref|YP_001435828.1| - 0.067 11.8 0.1 0.32 9.5 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain RNase_Zc3h12a PF11977.3 gi|156938032|ref|YP_001435828.1| - 0.13 12.1 0.0 0.39 10.5 0.0 1.8 2 0 0 2 2 1 0 Zc3h12a-like Ribonuclease NYN domain RNA_helicase PF00910.17 gi|156938032|ref|YP_001435828.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.7 1 1 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.13 gi|156938032|ref|YP_001435828.1| - 0.18 11.3 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Amidohydro_3 PF07969.6 gi|156938033|ref|YP_001435829.1| - 7.9e-33 114.2 0.0 1.2e-32 113.6 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family ADH_N PF08240.7 gi|156938034|ref|YP_001435830.1| - 1.6e-06 27.8 0.1 0.0051 16.5 0.0 2.4 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain Aconitase_C PF00694.14 gi|156938035|ref|YP_001435831.1| - 1.5e-20 73.6 0.1 2.5e-20 72.9 0.1 1.4 1 1 0 1 1 1 1 Aconitase C-terminal domain HMGL-like PF00682.14 gi|156938036|ref|YP_001435832.1| - 6.6e-65 219.0 4.8 9.8e-65 218.5 3.3 1.2 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.16 gi|156938036|ref|YP_001435832.1| - 6.6e-15 54.5 0.1 2.3e-14 52.8 0.0 2.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|156938036|ref|YP_001435832.1| - 0.027 14.2 0.1 0.63 9.8 0.0 2.8 2 0 0 2 2 2 0 GYD domain Glyco_hydro_97 PF10566.4 gi|156938036|ref|YP_001435832.1| - 0.039 13.0 0.3 0.062 12.3 0.2 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 AP_endonuc_2 PF01261.19 gi|156938036|ref|YP_001435832.1| - 0.18 11.0 2.2 0.73 9.0 0.8 2.5 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel Thioredoxin_3 PF13192.1 gi|156938037|ref|YP_001435833.1| - 0.048 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin domain DNA_ligase_A_M PF01068.16 gi|156938038|ref|YP_001435834.1| - 9.9e-18 64.2 0.0 1.5e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|156938038|ref|YP_001435834.1| - 2e-06 27.7 0.0 4.4e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 RNA ligase Chlor_dismutase PF06778.7 gi|156938038|ref|YP_001435834.1| - 0.029 14.1 0.0 0.071 12.8 0.0 1.6 2 0 0 2 2 2 0 Chlorite dismutase mRNA_cap_enzyme PF01331.14 gi|156938038|ref|YP_001435834.1| - 0.12 12.1 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain AIRS_C PF02769.17 gi|156938039|ref|YP_001435835.1| - 2e-45 154.5 1.0 1.6e-23 83.3 0.0 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|156938039|ref|YP_001435835.1| - 1.3e-38 131.1 1.3 2.4e-24 85.3 0.2 2.7 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain Tegument_dsDNA PF12818.2 gi|156938039|ref|YP_001435835.1| - 0.033 13.0 0.0 1.5 7.5 0.0 2.3 2 0 0 2 2 2 0 dsDNA viral tegument protein Histidinol_dh PF00815.15 gi|156938039|ref|YP_001435835.1| - 0.18 10.4 0.1 0.29 9.7 0.1 1.3 1 0 0 1 1 1 0 Histidinol dehydrogenase TatD_DNase PF01026.16 gi|156938040|ref|YP_001435836.1| - 2.1e-20 73.0 0.0 2.5e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Lactamase_B_3 PF13483.1 gi|156938041|ref|YP_001435837.1| - 4e-25 88.4 0.1 5.6e-25 87.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|156938041|ref|YP_001435837.1| - 1.5e-15 57.2 0.1 2.1e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|156938041|ref|YP_001435837.1| - 4.2e-12 46.1 5.3 9.6e-12 44.9 3.7 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Inhibitor_I78 PF11720.3 gi|156938041|ref|YP_001435837.1| - 0.11 12.1 0.0 0.58 9.9 0.0 2.0 2 0 0 2 2 2 0 Peptidase inhibitor I78 family POR PF01558.13 gi|156938043|ref|YP_001435839.1| - 2.4e-44 151.2 0.2 2.8e-44 151.0 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|156938044|ref|YP_001435840.1| - 4.1e-14 51.4 16.8 1.1e-07 31.1 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|156938044|ref|YP_001435840.1| - 4.6e-13 48.8 17.0 1.6e-09 37.4 6.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156938044|ref|YP_001435840.1| - 3.8e-10 39.9 8.9 6.1e-10 39.3 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156938044|ref|YP_001435840.1| - 8e-09 34.9 13.1 0.00018 21.1 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156938044|ref|YP_001435840.1| - 3.8e-08 33.4 19.7 1.1e-06 28.8 7.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156938044|ref|YP_001435840.1| - 4.6e-08 32.7 10.6 9.5e-08 31.7 7.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156938044|ref|YP_001435840.1| - 6.5e-08 32.1 15.0 0.0006 19.5 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156938044|ref|YP_001435840.1| - 1.5e-06 28.8 21.9 0.00012 22.7 7.7 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|156938044|ref|YP_001435840.1| - 2.1e-06 27.6 8.9 0.0014 18.7 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156938044|ref|YP_001435840.1| - 3.9e-05 23.6 8.8 0.00012 22.0 6.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156938044|ref|YP_001435840.1| - 0.0022 18.3 12.6 0.035 14.4 8.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|156938044|ref|YP_001435840.1| - 0.0022 18.3 12.0 0.024 15.0 0.9 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|156938044|ref|YP_001435840.1| - 0.0056 17.0 7.2 0.18 12.2 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|156938044|ref|YP_001435840.1| - 0.0094 16.5 12.5 0.75 10.4 2.9 3.0 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|156938044|ref|YP_001435840.1| - 0.34 11.5 16.8 0.42 11.2 4.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|156938045|ref|YP_001435841.1| - 2.8e-67 226.5 1.6 4.3e-67 226.0 1.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|156938045|ref|YP_001435841.1| - 6.3e-05 22.5 4.8 0.00068 19.1 1.7 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|156938045|ref|YP_001435841.1| - 0.00028 20.8 0.2 0.0024 17.7 0.0 2.4 1 1 1 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|156938046|ref|YP_001435842.1| - 6.1e-26 90.8 0.1 9.6e-26 90.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TruD PF01142.13 gi|156938047|ref|YP_001435843.1| - 4.2e-47 160.6 0.0 7.1e-37 126.9 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) KOW PF00467.24 gi|156938048|ref|YP_001435844.1| - 7e-06 25.5 2.4 7e-06 25.5 1.6 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_L14e PF01929.12 gi|156938048|ref|YP_001435844.1| - 0.0015 18.8 0.1 0.002 18.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 Phage_Mu_Gam PF07352.7 gi|156938048|ref|YP_001435844.1| - 0.068 12.6 0.1 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein Peptidase_M50 PF02163.17 gi|156938049|ref|YP_001435845.1| - 5.5e-22 77.6 3.1 5.5e-22 77.6 2.1 2.3 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|156938049|ref|YP_001435845.1| - 9.3e-14 51.0 0.5 2.5e-13 49.7 0.3 1.8 1 1 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|156938049|ref|YP_001435845.1| - 3e-10 40.1 0.4 6.9e-10 38.9 0.3 1.6 1 1 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) GRASP55_65 PF04495.9 gi|156938049|ref|YP_001435845.1| - 0.002 18.1 0.2 0.0042 17.0 0.0 1.6 2 0 0 2 2 2 1 GRASP55/65 PDZ-like domain PDZ_1 PF12812.2 gi|156938049|ref|YP_001435845.1| - 0.003 17.4 0.0 0.006 16.4 0.0 1.4 1 0 0 1 1 1 1 PDZ-like domain Tricorn_PDZ PF14685.1 gi|156938049|ref|YP_001435845.1| - 0.0067 16.1 0.1 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Tricorn protease PDZ domain DUF912 PF06024.7 gi|156938049|ref|YP_001435845.1| - 9.3 6.3 6.7 17 5.5 0.0 3.0 3 0 0 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Ldh_1_N PF00056.18 gi|156938050|ref|YP_001435846.1| - 5.2e-32 110.6 2.4 8.1e-32 109.9 1.6 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|156938050|ref|YP_001435846.1| - 6.3e-20 71.6 0.0 1e-19 70.9 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|156938050|ref|YP_001435846.1| - 0.00057 19.3 2.7 0.0032 16.8 1.9 2.2 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF4147 PF13660.1 gi|156938050|ref|YP_001435846.1| - 0.0049 16.0 0.2 0.011 14.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) UPF0180 PF03698.8 gi|156938050|ref|YP_001435846.1| - 0.0057 16.4 0.1 1.2 9.0 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0180) GFO_IDH_MocA PF01408.17 gi|156938050|ref|YP_001435846.1| - 0.037 14.5 0.3 0.086 13.3 0.2 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ThiF PF00899.16 gi|156938050|ref|YP_001435846.1| - 0.054 13.3 1.1 0.14 11.9 0.1 2.2 2 1 1 3 3 3 0 ThiF family Glyco_hydro_4 PF02056.11 gi|156938050|ref|YP_001435846.1| - 0.059 12.6 0.1 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase RNase_P_p30 PF01876.11 gi|156938051|ref|YP_001435847.1| - 2.6e-10 39.7 0.0 3.7e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Methyltrans_SAM PF10672.4 gi|156938052|ref|YP_001435848.1| - 2.6e-18 65.8 0.0 3.2e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.10 gi|156938052|ref|YP_001435848.1| - 4.7e-13 48.9 0.0 1.1e-12 47.7 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|156938052|ref|YP_001435848.1| - 2.4e-10 40.3 0.0 1e-09 38.2 0.0 1.8 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|156938052|ref|YP_001435848.1| - 1.1e-05 25.4 0.0 2.2e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|156938052|ref|YP_001435848.1| - 0.0017 17.5 0.0 0.003 16.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|156938052|ref|YP_001435848.1| - 0.0018 17.2 0.0 0.0021 17.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|156938052|ref|YP_001435848.1| - 0.002 17.5 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|156938052|ref|YP_001435848.1| - 0.0051 17.3 0.1 0.2 12.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain DNA_methylase PF00145.12 gi|156938052|ref|YP_001435848.1| - 0.084 11.9 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase DUF790 PF05626.6 gi|156938052|ref|YP_001435848.1| - 0.12 10.9 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF790) RskA PF10099.4 gi|156938053|ref|YP_001435849.1| - 0.14 11.8 3.5 0.14 11.8 2.4 1.0 1 0 0 1 1 1 0 Anti-sigma-K factor rskA Transketolase_N PF00456.16 gi|156938054|ref|YP_001435850.1| - 1.3e-51 175.3 0.0 2.3e-51 174.6 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|156938054|ref|YP_001435850.1| - 3.6e-14 52.3 1.1 0.00024 20.1 0.0 3.1 2 1 1 3 3 3 3 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|156938054|ref|YP_001435850.1| - 4.1e-08 32.3 0.0 6e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.16 gi|156938054|ref|YP_001435850.1| - 3.2e-05 23.5 0.1 0.00064 19.3 0.1 2.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain eIF-5_eIF-2B PF01873.12 gi|156938055|ref|YP_001435851.1| - 1.7e-33 114.9 0.0 1.9e-33 114.7 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.1 gi|156938055|ref|YP_001435851.1| - 0.004 17.4 0.5 0.0076 16.5 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF3797 PF12677.2 gi|156938055|ref|YP_001435851.1| - 0.024 14.2 0.2 7.1 6.3 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn_Tnp_IS1595 PF12760.2 gi|156938055|ref|YP_001435851.1| - 0.061 13.1 0.2 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|156938055|ref|YP_001435851.1| - 0.064 12.7 2.0 7 6.2 0.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Elf1 PF05129.8 gi|156938055|ref|YP_001435851.1| - 0.065 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like RNA_POL_M_15KD PF02150.11 gi|156938055|ref|YP_001435851.1| - 0.092 12.4 0.2 0.48 10.1 0.1 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit NMD3 PF04981.8 gi|156938055|ref|YP_001435851.1| - 0.12 11.5 0.3 0.18 10.9 0.2 1.2 1 0 0 1 1 1 0 NMD3 family Cys_rich_KTR PF14205.1 gi|156938055|ref|YP_001435851.1| - 0.29 10.6 5.1 5 6.6 1.5 3.0 2 1 0 2 2 2 0 Cysteine-rich KTR NOB1_Zn_bind PF08772.6 gi|156938055|ref|YP_001435851.1| - 0.88 9.4 3.9 2.4 8.0 0.2 2.6 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like FtsX PF02687.16 gi|156938056|ref|YP_001435852.1| - 5.1e-14 52.0 24.4 3.6e-13 49.3 8.3 3.5 4 0 0 4 4 4 2 FtsX-like permease family ABC_tran PF00005.22 gi|156938057|ref|YP_001435853.1| - 1.2e-31 109.8 0.0 1.5e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156938057|ref|YP_001435853.1| - 2.2e-12 47.5 0.0 2e-07 31.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156938057|ref|YP_001435853.1| - 2.3e-09 36.7 0.1 9.3e-06 25.0 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|156938057|ref|YP_001435853.1| - 8.8e-06 25.8 0.8 0.00011 22.2 0.5 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|156938057|ref|YP_001435853.1| - 2.5e-05 23.6 0.0 4.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|156938057|ref|YP_001435853.1| - 2.6e-05 25.0 0.0 5.6e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|156938057|ref|YP_001435853.1| - 3.3e-05 23.4 0.0 0.015 14.7 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|156938057|ref|YP_001435853.1| - 8.8e-05 22.6 0.2 0.0031 17.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|156938057|ref|YP_001435853.1| - 0.00047 20.0 0.3 0.0026 17.6 0.2 2.0 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|156938057|ref|YP_001435853.1| - 0.0071 16.0 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|156938057|ref|YP_001435853.1| - 0.0077 15.6 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|156938057|ref|YP_001435853.1| - 0.013 14.6 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|156938057|ref|YP_001435853.1| - 0.015 15.0 0.4 0.058 13.1 0.0 2.1 2 1 0 2 2 2 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|156938057|ref|YP_001435853.1| - 0.016 15.1 0.0 0.12 12.2 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|156938057|ref|YP_001435853.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|156938057|ref|YP_001435853.1| - 0.025 14.9 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|156938057|ref|YP_001435853.1| - 0.029 14.8 0.0 0.11 12.9 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein ArgK PF03308.11 gi|156938057|ref|YP_001435853.1| - 0.031 13.0 0.1 0.074 11.8 0.0 1.6 2 0 0 2 2 2 0 ArgK protein SbcCD_C PF13558.1 gi|156938057|ref|YP_001435853.1| - 0.039 13.8 0.0 0.17 11.8 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|156938057|ref|YP_001435853.1| - 0.044 14.0 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|156938057|ref|YP_001435853.1| - 0.12 11.9 0.0 0.46 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|156938057|ref|YP_001435853.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_13 PF13166.1 gi|156938057|ref|YP_001435853.1| - 0.17 10.3 0.0 2.8 6.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.18 gi|156938057|ref|YP_001435853.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Dynamin family phiKZ_IP PF12699.2 gi|156938058|ref|YP_001435854.1| - 0.011 14.6 1.3 0.014 14.3 0.2 1.8 2 0 0 2 2 2 0 phiKZ-like phage internal head proteins Isochorismatase PF00857.15 gi|156938058|ref|YP_001435854.1| - 0.015 15.2 0.1 0.038 13.9 0.0 1.7 1 1 0 1 1 1 0 Isochorismatase family DUF972 PF06156.8 gi|156938058|ref|YP_001435854.1| - 0.023 15.0 1.3 0.023 15.0 0.9 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF972) Phage_Gp23 PF10669.4 gi|156938058|ref|YP_001435854.1| - 0.037 14.1 0.1 0.037 14.1 0.1 1.9 2 0 0 2 2 2 0 Protein gp23 (Bacteriophage A118) KfrA_N PF11740.3 gi|156938058|ref|YP_001435854.1| - 0.12 12.8 4.1 0.62 10.5 0.3 3.1 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term GrpE PF01025.14 gi|156938058|ref|YP_001435854.1| - 0.15 11.5 8.6 0.11 12.0 2.7 2.6 1 1 1 3 3 3 0 GrpE SecA_SW PF07516.8 gi|156938058|ref|YP_001435854.1| - 0.18 11.5 5.5 0.79 9.4 2.3 2.3 1 1 1 2 2 2 0 SecA Wing and Scaffold domain DUF342 PF03961.8 gi|156938058|ref|YP_001435854.1| - 0.4 9.0 4.5 0.55 8.5 3.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) FlaC_arch PF05377.6 gi|156938058|ref|YP_001435854.1| - 0.69 9.8 6.7 15 5.5 0.1 2.9 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Matrilin_ccoil PF10393.4 gi|156938058|ref|YP_001435854.1| - 1.1 8.6 3.5 9.7 5.6 0.5 3.5 3 1 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Uds1 PF15456.1 gi|156938058|ref|YP_001435854.1| - 2.1 8.3 9.1 0.56 10.2 2.6 2.2 2 0 0 2 2 2 0 Up-regulated During Septation UPF0179 PF03684.8 gi|156938059|ref|YP_001435855.1| - 1.8e-19 69.7 0.6 2.3e-19 69.3 0.4 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|156938059|ref|YP_001435855.1| - 0.43 10.5 3.7 2.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Transposase DDE domain PAP2 PF01569.16 gi|156938060|ref|YP_001435856.1| - 9.9e-16 57.5 3.5 2e-15 56.6 2.3 1.6 1 1 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|156938060|ref|YP_001435856.1| - 4.5e-06 26.3 1.2 5.8e-06 25.9 0.8 1.4 1 1 0 1 1 1 1 PAP2 superfamily Ribosomal_L18e PF00828.14 gi|156938061|ref|YP_001435857.1| - 7.5e-26 91.0 0.5 9.9e-26 90.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 DUF374 PF04028.8 gi|156938061|ref|YP_001435857.1| - 0.18 11.0 0.1 0.18 11.0 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF374) Ribosomal_L30 PF00327.15 gi|156938062|ref|YP_001435858.1| - 5.7e-11 41.8 0.0 1.4e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|156938063|ref|YP_001435859.1| - 4e-28 96.4 0.0 7.6e-28 95.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|156938063|ref|YP_001435859.1| - 7.9e-25 86.3 1.6 1.9e-23 81.9 0.7 2.3 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.17 gi|156938064|ref|YP_001435860.1| - 7.8e-35 119.6 0.1 1e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|156938064|ref|YP_001435860.1| - 6.2e-13 49.1 0.3 1.4e-12 47.9 0.2 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|156938065|ref|YP_001435861.1| - 3.5e-55 185.8 11.1 3.8e-55 185.7 7.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|156938065|ref|YP_001435861.1| - 0.01 16.0 2.8 1.1 9.5 0.1 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain S4 PF01479.20 gi|156938065|ref|YP_001435861.1| - 0.015 14.7 0.0 0.038 13.4 0.0 1.8 1 0 0 1 1 1 0 S4 domain Vps35 PF03635.12 gi|156938065|ref|YP_001435861.1| - 0.063 11.4 0.0 0.081 11.0 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Ribosomal_L32e PF01655.13 gi|156938066|ref|YP_001435862.1| - 3e-42 143.1 0.7 3e-42 143.1 0.5 1.6 2 0 0 2 2 2 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|156938067|ref|YP_001435863.1| - 2.5e-29 101.5 11.7 5e-16 58.9 2.5 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DNA_pol3_beta PF00712.14 gi|156938067|ref|YP_001435863.1| - 0.023 14.5 0.0 0.47 10.3 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain HSP20 PF00011.16 gi|156938067|ref|YP_001435863.1| - 0.38 10.6 5.5 5.5 6.9 0.1 2.9 2 1 1 3 3 3 0 Hsp20/alpha crystallin family SUI1 PF01253.17 gi|156938068|ref|YP_001435864.1| - 1.9e-25 88.4 0.8 2.2e-25 88.2 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|156938068|ref|YP_001435864.1| - 0.027 14.6 0.5 0.036 14.3 0.4 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF3387 PF11867.3 gi|156938068|ref|YP_001435864.1| - 0.098 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3387) Sec34 PF04136.10 gi|156938068|ref|YP_001435864.1| - 0.29 10.8 1.1 4.6 6.9 1.0 2.0 1 1 1 2 2 2 0 Sec34-like family Zn_Tnp_IS1595 PF12760.2 gi|156938069|ref|YP_001435865.1| - 1.8e-06 27.6 0.3 0.00093 18.9 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156938069|ref|YP_001435865.1| - 8.5e-05 21.6 0.8 0.055 12.6 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|156938069|ref|YP_001435865.1| - 0.00013 21.3 10.6 0.0012 18.2 7.4 2.1 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|156938069|ref|YP_001435865.1| - 0.0035 16.9 0.8 0.0081 15.7 0.4 1.7 1 1 2 3 3 3 2 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|156938069|ref|YP_001435865.1| - 0.0046 16.5 1.9 0.32 10.5 0.1 2.3 2 1 1 3 3 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|156938069|ref|YP_001435865.1| - 0.005 16.5 3.5 0.64 9.7 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.1 gi|156938069|ref|YP_001435865.1| - 0.0093 15.6 1.1 0.39 10.4 0.1 2.3 3 0 0 3 3 2 1 zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|156938069|ref|YP_001435865.1| - 0.013 15.0 0.6 2.6 7.6 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPCC zf-ISL3 PF14690.1 gi|156938069|ref|YP_001435865.1| - 0.014 15.3 1.4 0.062 13.3 0.2 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.6 gi|156938069|ref|YP_001435865.1| - 0.015 15.0 0.2 0.027 14.3 0.2 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.13 gi|156938069|ref|YP_001435865.1| - 0.018 14.6 1.2 3.5 7.3 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|156938069|ref|YP_001435865.1| - 0.019 14.4 1.1 0.27 10.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|156938069|ref|YP_001435865.1| - 0.024 13.9 0.3 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|156938069|ref|YP_001435865.1| - 0.034 13.9 1.0 1.4 8.7 1.0 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-CSL PF05207.8 gi|156938069|ref|YP_001435865.1| - 0.037 13.5 0.5 0.053 13.0 0.4 1.3 1 1 0 1 1 1 0 CSL zinc finger HypA PF01155.14 gi|156938069|ref|YP_001435865.1| - 0.039 13.6 0.1 0.043 13.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2082 PF09855.4 gi|156938069|ref|YP_001435865.1| - 0.041 13.7 1.6 0.19 11.6 0.0 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF35_N PF12172.3 gi|156938069|ref|YP_001435865.1| - 0.052 13.4 0.5 2.3 8.2 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.15 gi|156938069|ref|YP_001435865.1| - 0.052 13.4 4.7 1.1 9.1 3.3 2.1 1 1 0 1 1 1 0 Rubredoxin zf-CHY PF05495.7 gi|156938069|ref|YP_001435865.1| - 0.061 13.4 0.0 0.069 13.3 0.0 1.1 1 0 0 1 1 1 0 CHY zinc finger zf-C4_Topoisom PF01396.14 gi|156938069|ref|YP_001435865.1| - 0.071 12.6 1.1 0.15 11.5 0.1 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger IBR PF01485.16 gi|156938069|ref|YP_001435865.1| - 0.079 12.8 0.1 0.1 12.4 0.1 1.2 1 0 0 1 1 1 0 IBR domain DUF2072 PF09845.4 gi|156938069|ref|YP_001435865.1| - 0.079 12.8 0.5 0.085 12.7 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-LITAF-like PF10601.4 gi|156938069|ref|YP_001435865.1| - 0.085 12.7 0.2 13 5.6 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF2752 PF10825.3 gi|156938069|ref|YP_001435865.1| - 0.13 12.3 0.4 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-H2C2_2 PF13465.1 gi|156938069|ref|YP_001435865.1| - 0.17 12.2 0.7 9 6.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-NADH-PPase PF09297.6 gi|156938069|ref|YP_001435865.1| - 0.17 11.4 1.9 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|156938069|ref|YP_001435865.1| - 0.19 10.8 2.8 0.39 9.8 2.0 1.7 1 1 0 1 1 1 0 Mu-like prophage protein Com Zn-ribbon_8 PF09723.5 gi|156938069|ref|YP_001435865.1| - 0.2 11.6 3.8 1.3 9.0 2.6 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|156938069|ref|YP_001435865.1| - 0.23 11.4 2.8 2.7 7.9 0.2 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-H2C2_5 PF13909.1 gi|156938069|ref|YP_001435865.1| - 0.23 11.7 0.8 0.46 10.8 0.0 1.8 2 0 0 2 2 2 0 C2H2-type zinc-finger domain Cys_rich_KTR PF14205.1 gi|156938069|ref|YP_001435865.1| - 0.23 10.9 0.1 0.23 10.9 0.1 1.5 2 0 0 2 2 1 0 Cysteine-rich KTR Ribosomal_L37e PF01907.14 gi|156938069|ref|YP_001435865.1| - 0.25 11.1 6.0 0.96 9.2 0.5 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e zf-Mss51 PF13824.1 gi|156938069|ref|YP_001435865.1| - 0.33 10.8 2.2 6.2 6.7 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.1 gi|156938069|ref|YP_001435865.1| - 0.35 10.6 2.5 12 5.7 0.1 2.4 1 1 0 2 2 2 0 Nudix N-terminal zf-ZPR1 PF03367.8 gi|156938069|ref|YP_001435865.1| - 0.39 9.8 1.6 0.75 8.9 0.1 1.9 1 1 1 2 2 2 0 ZPR1 zinc-finger domain zf-HIT PF04438.11 gi|156938069|ref|YP_001435865.1| - 0.44 10.2 4.2 5.4 6.7 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Desulfoferrod_N PF06397.7 gi|156938069|ref|YP_001435865.1| - 0.61 9.5 2.6 0.69 9.3 0.1 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RNA_POL_M_15KD PF02150.11 gi|156938069|ref|YP_001435865.1| - 0.97 9.1 4.3 2.7 7.7 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Hydrolase_3 PF08282.7 gi|156938071|ref|YP_001435867.1| - 4.1e-28 98.6 0.1 8.3e-20 71.4 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|156938071|ref|YP_001435867.1| - 3.9e-10 40.5 0.7 9.8e-06 26.1 0.0 3.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|156938071|ref|YP_001435867.1| - 8.6e-10 38.3 0.0 1e-08 34.7 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|156938071|ref|YP_001435867.1| - 1.5e-09 38.2 0.1 1.8e-07 31.5 0.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|156938071|ref|YP_001435867.1| - 0.001 19.3 0.0 1.1 9.5 0.0 2.5 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|156938071|ref|YP_001435867.1| - 0.0015 17.4 0.1 0.033 13.0 0.1 2.1 2 0 0 2 2 2 1 Trehalose-phosphatase Hydrolase_6 PF13344.1 gi|156938071|ref|YP_001435867.1| - 0.0032 17.3 0.1 0.015 15.1 0.0 2.1 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase GlutR_dimer PF00745.15 gi|156938073|ref|YP_001435869.1| - 0.022 14.7 0.0 0.093 12.6 0.0 1.9 1 1 1 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain DEAD PF00270.24 gi|156938074|ref|YP_001435870.1| - 2.1e-29 102.1 0.0 1e-27 96.6 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|156938074|ref|YP_001435870.1| - 6.6e-12 45.1 0.0 1.6e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|156938074|ref|YP_001435870.1| - 1.8e-07 31.1 0.0 5e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Arch_ATPase PF01637.13 gi|156938074|ref|YP_001435870.1| - 0.00058 19.6 0.1 0.002 17.8 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase HHH_5 PF14520.1 gi|156938074|ref|YP_001435870.1| - 0.001 19.2 0.1 0.01 15.9 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.1 gi|156938074|ref|YP_001435870.1| - 0.0046 17.1 0.0 0.052 13.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|156938074|ref|YP_001435870.1| - 0.0076 15.6 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein T2SE PF00437.15 gi|156938074|ref|YP_001435870.1| - 0.0078 15.1 0.0 0.016 14.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|156938074|ref|YP_001435870.1| - 0.015 14.7 0.0 0.35 10.2 0.0 2.5 2 1 0 2 2 2 0 AAA-like domain KaiC PF06745.8 gi|156938074|ref|YP_001435870.1| - 0.022 13.8 0.0 0.045 12.8 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_19 PF13245.1 gi|156938074|ref|YP_001435870.1| - 0.025 14.3 0.1 0.49 10.1 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain Zot PF05707.7 gi|156938074|ref|YP_001435870.1| - 0.032 13.7 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) MobB PF03205.9 gi|156938074|ref|YP_001435870.1| - 0.076 12.7 0.0 0.22 11.1 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B EPSP_synthase PF00275.15 gi|156938075|ref|YP_001435871.1| - 1.6e-84 283.7 0.0 1.8e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PAP2 PF01569.16 gi|156938077|ref|YP_001435873.1| - 0.00021 20.9 8.1 0.00056 19.5 5.6 1.9 1 1 0 1 1 1 1 PAP2 superfamily DUF2542 PF10808.3 gi|156938077|ref|YP_001435873.1| - 0.034 14.4 0.0 0.088 13.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2542) MtrF PF09472.5 gi|156938077|ref|YP_001435873.1| - 0.15 11.3 1.9 0.45 9.8 1.3 1.8 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF4131 PF13567.1 gi|156938077|ref|YP_001435873.1| - 6.3 6.1 12.2 0.16 11.3 2.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) EmrE PF13536.1 gi|156938077|ref|YP_001435873.1| - 9.6 6.4 13.8 18 5.5 7.8 2.6 1 1 1 2 2 2 0 Multidrug resistance efflux transporter Pox_F11 PF04943.7 gi|156938078|ref|YP_001435874.1| - 0.0057 15.5 0.0 0.0062 15.4 0.0 1.0 1 0 0 1 1 1 1 Poxvirus F11 protein DUF3227 PF11537.3 gi|156938078|ref|YP_001435874.1| - 0.014 15.4 0.1 0.015 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3227) DUF4298 PF14131.1 gi|156938078|ref|YP_001435874.1| - 0.021 14.7 0.5 0.03 14.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) ALIX_LYPXL_bnd PF13949.1 gi|156938078|ref|YP_001435874.1| - 0.1 11.5 0.4 0.11 11.4 0.3 1.0 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Ammonium_transp PF00909.16 gi|156938080|ref|YP_001435876.1| - 5.6e-115 384.0 29.1 6.3e-115 383.8 20.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|156938081|ref|YP_001435877.1| - 2.9e-32 111.1 0.8 3.3e-32 110.9 0.6 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II ABC_ATPase PF09818.4 gi|156938081|ref|YP_001435877.1| - 0.026 13.0 0.2 0.048 12.2 0.0 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Nit_Regul_Hom PF10126.4 gi|156938081|ref|YP_001435877.1| - 0.056 13.2 0.0 3.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Cdc6_C PF09079.6 gi|156938082|ref|YP_001435878.1| - 2.6e-18 65.5 0.1 1.3e-17 63.2 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|156938082|ref|YP_001435878.1| - 9.2e-09 35.5 0.1 7.8e-08 32.5 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|156938082|ref|YP_001435878.1| - 3.5e-07 30.3 2.4 5.4e-05 23.2 0.1 3.1 1 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|156938082|ref|YP_001435878.1| - 6.4e-06 26.0 3.3 3e-05 23.8 2.3 2.0 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|156938082|ref|YP_001435878.1| - 0.041 13.5 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain UB2H PF14814.1 gi|156938082|ref|YP_001435878.1| - 0.047 13.4 0.8 1.9 8.3 0.1 2.8 3 0 0 3 3 3 0 Bifunctional transglycosylase second domain TrmB PF01978.14 gi|156938082|ref|YP_001435878.1| - 0.08 12.6 0.3 0.22 11.2 0.2 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Antimicrobial12 PF08107.6 gi|156938082|ref|YP_001435878.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Pleurocidin family HTH_5 PF01022.15 gi|156938083|ref|YP_001435879.1| - 0.00049 19.7 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|156938083|ref|YP_001435879.1| - 0.0011 18.6 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|156938083|ref|YP_001435879.1| - 0.0014 17.9 0.0 0.0024 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|156938083|ref|YP_001435879.1| - 0.0035 17.0 0.1 0.0045 16.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|156938083|ref|YP_001435879.1| - 0.0051 16.3 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|156938083|ref|YP_001435879.1| - 0.0075 15.9 0.0 0.0092 15.6 0.0 1.1 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|156938083|ref|YP_001435879.1| - 0.016 14.9 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family Sulfolobus_pRN PF05584.6 gi|156938083|ref|YP_001435879.1| - 0.021 14.7 0.4 0.033 14.1 0.3 1.4 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF977 PF06163.6 gi|156938083|ref|YP_001435879.1| - 0.03 14.0 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_34 PF13601.1 gi|156938083|ref|YP_001435879.1| - 0.031 14.3 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain RuvB_C PF05491.8 gi|156938083|ref|YP_001435879.1| - 0.045 13.3 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_20 PF12840.2 gi|156938083|ref|YP_001435879.1| - 0.052 13.3 0.0 0.061 13.1 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|156938083|ref|YP_001435879.1| - 0.07 13.2 0.0 0.079 13.0 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator MCM PF00493.18 gi|156938084|ref|YP_001435880.1| - 4e-139 463.0 0.0 5.7e-139 462.5 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|156938084|ref|YP_001435880.1| - 5.6e-22 78.5 1.3 2.1e-21 76.6 0.2 2.4 2 1 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|156938084|ref|YP_001435880.1| - 1.8e-09 37.4 0.0 5.3e-09 35.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|156938084|ref|YP_001435880.1| - 8.2e-08 31.6 0.1 2.2e-05 23.6 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|156938084|ref|YP_001435880.1| - 5.4e-06 26.0 0.0 1.5e-05 24.5 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|156938084|ref|YP_001435880.1| - 0.00048 19.6 0.1 0.0029 17.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Zn-ribbon_8 PF09723.5 gi|156938084|ref|YP_001435880.1| - 0.035 14.0 2.7 0.099 12.6 1.9 1.7 1 0 0 1 1 1 0 Zinc ribbon domain AAA_22 PF13401.1 gi|156938084|ref|YP_001435880.1| - 0.088 12.9 0.5 1.8 8.7 0.1 3.0 2 2 1 3 3 3 0 AAA domain CMD PF02627.15 gi|156938084|ref|YP_001435880.1| - 0.1 12.4 1.5 1.8 8.4 0.0 2.7 2 0 0 2 2 2 0 Carboxymuconolactone decarboxylase family V-ATPase_H_N PF03224.9 gi|156938084|ref|YP_001435880.1| - 0.16 11.0 0.0 0.65 9.0 0.0 2.0 3 0 0 3 3 3 0 V-ATPase subunit H AAA_16 PF13191.1 gi|156938084|ref|YP_001435880.1| - 0.18 11.7 1.5 1.3 9.0 0.0 2.9 3 1 0 3 3 3 0 AAA ATPase domain RPA_C PF08784.6 gi|156938084|ref|YP_001435880.1| - 0.19 12.1 0.1 0.52 10.7 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal Sld5 PF05916.6 gi|156938085|ref|YP_001435881.1| - 9.9e-07 29.0 0.2 1.8e-06 28.1 0.2 1.5 1 1 0 1 1 1 1 GINS complex protein Polysacc_syn_2C PF08485.5 gi|156938085|ref|YP_001435881.1| - 0.052 13.0 0.4 3 7.4 0.0 2.5 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein C-terminal Rep_fac_C PF08542.6 gi|156938086|ref|YP_001435882.1| - 2e-18 66.1 0.0 6.9e-18 64.4 0.0 2.0 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|156938086|ref|YP_001435882.1| - 8.8e-15 54.7 0.0 1.4e-12 47.6 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.24 gi|156938086|ref|YP_001435882.1| - 1e-13 51.6 0.0 1.7e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|156938086|ref|YP_001435882.1| - 5.5e-10 38.5 0.0 3.5e-05 22.6 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|156938086|ref|YP_001435882.1| - 2.4e-08 33.3 0.0 1.6e-07 30.6 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|156938086|ref|YP_001435882.1| - 2.6e-08 34.0 0.1 0.011 15.8 0.0 2.7 1 1 1 2 2 2 2 AAA domain DNA_pol3_delta PF06144.8 gi|156938086|ref|YP_001435882.1| - 4.1e-07 29.6 0.0 8.4e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|156938086|ref|YP_001435882.1| - 6e-07 29.4 0.1 7.4e-06 25.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|156938086|ref|YP_001435882.1| - 2.4e-06 27.1 0.0 4.2e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|156938086|ref|YP_001435882.1| - 6e-06 25.8 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|156938086|ref|YP_001435882.1| - 6.1e-06 26.3 0.0 0.00035 20.5 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain TIP49 PF06068.8 gi|156938086|ref|YP_001435882.1| - 1.1e-05 24.3 0.0 0.012 14.3 0.0 2.1 2 0 0 2 2 2 2 TIP49 C-terminus PhoH PF02562.11 gi|156938086|ref|YP_001435882.1| - 2.7e-05 23.4 0.1 0.034 13.3 0.0 2.4 1 1 1 2 2 2 2 PhoH-like protein AAA_18 PF13238.1 gi|156938086|ref|YP_001435882.1| - 2.8e-05 24.4 0.1 0.00017 21.8 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|156938086|ref|YP_001435882.1| - 7.6e-05 22.3 0.0 0.00018 21.1 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain SNF2_N PF00176.18 gi|156938086|ref|YP_001435882.1| - 7.6e-05 21.6 0.0 0.32 9.7 0.0 2.2 2 0 0 2 2 2 2 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|156938086|ref|YP_001435882.1| - 0.00013 21.3 0.3 0.00072 19.0 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|156938086|ref|YP_001435882.1| - 0.00017 21.1 0.0 0.028 13.8 0.0 2.4 1 1 1 2 2 2 1 AAA-like domain DEAD PF00270.24 gi|156938086|ref|YP_001435882.1| - 0.00067 19.1 0.1 0.44 10.0 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.13 gi|156938086|ref|YP_001435882.1| - 0.00069 19.1 0.0 0.0035 16.8 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|156938086|ref|YP_001435882.1| - 0.00083 19.0 0.1 0.0052 16.5 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) RsbU_N PF08673.5 gi|156938086|ref|YP_001435882.1| - 0.00091 19.1 0.1 0.43 10.6 0.0 3.3 3 0 0 3 3 3 1 Phosphoserine phosphatase RsbU, N-terminal domain AAA_11 PF13086.1 gi|156938086|ref|YP_001435882.1| - 0.0013 18.3 0.0 0.0031 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|156938086|ref|YP_001435882.1| - 0.0016 18.2 0.0 0.019 14.6 0.0 2.1 1 1 1 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|156938086|ref|YP_001435882.1| - 0.0017 19.1 0.0 0.0049 17.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|156938086|ref|YP_001435882.1| - 0.002 18.0 0.0 0.014 15.2 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.16 gi|156938086|ref|YP_001435882.1| - 0.0023 17.1 0.0 0.047 12.8 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|156938086|ref|YP_001435882.1| - 0.0046 16.8 0.0 0.012 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|156938086|ref|YP_001435882.1| - 0.0064 16.4 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|156938086|ref|YP_001435882.1| - 0.0074 15.8 0.0 0.015 14.8 0.0 1.5 2 0 0 2 2 1 1 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.1 gi|156938086|ref|YP_001435882.1| - 0.0094 16.0 0.0 0.044 13.8 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|156938086|ref|YP_001435882.1| - 0.01 14.7 0.0 0.019 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) KTI12 PF08433.5 gi|156938086|ref|YP_001435882.1| - 0.013 14.7 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|156938086|ref|YP_001435882.1| - 0.014 14.3 0.0 0.097 11.6 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|156938086|ref|YP_001435882.1| - 0.015 14.2 0.0 0.063 12.1 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|156938086|ref|YP_001435882.1| - 0.016 15.4 0.0 0.058 13.5 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|156938086|ref|YP_001435882.1| - 0.021 14.4 1.1 0.23 10.9 0.3 2.4 2 1 0 2 2 1 0 AAA domain DNA_pol3_gamma3 PF12169.3 gi|156938086|ref|YP_001435882.1| - 0.027 14.2 0.9 5.8 6.6 0.0 3.3 3 0 0 3 3 3 0 DNA polymerase III subunits gamma and tau domain III NACHT PF05729.7 gi|156938086|ref|YP_001435882.1| - 0.035 13.7 0.0 0.43 10.2 0.0 2.2 1 1 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.21 gi|156938086|ref|YP_001435882.1| - 0.059 12.8 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|156938086|ref|YP_001435882.1| - 0.067 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|156938086|ref|YP_001435882.1| - 0.076 12.5 0.4 0.31 10.5 0.1 2.2 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|156938086|ref|YP_001435882.1| - 0.12 12.0 0.0 1.7 8.3 0.0 2.2 1 1 1 2 2 2 0 NTPase NB-ARC PF00931.17 gi|156938086|ref|YP_001435882.1| - 0.12 11.2 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain TrwB_AAD_bind PF10412.4 gi|156938086|ref|YP_001435882.1| - 0.14 10.8 0.0 0.29 9.7 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF4272 PF14094.1 gi|156938086|ref|YP_001435882.1| - 0.14 11.0 0.1 2.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4272) AAA PF00004.24 gi|156938087|ref|YP_001435883.1| - 5e-15 55.8 0.0 3.8e-14 53.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RFC1 PF08519.7 gi|156938087|ref|YP_001435883.1| - 1.3e-07 31.5 1.1 5.1e-07 29.5 0.7 1.9 1 1 0 1 1 1 1 Replication factor RFC1 C terminal domain Rad17 PF03215.10 gi|156938087|ref|YP_001435883.1| - 3.6e-07 29.2 0.1 0.0082 14.8 0.0 2.3 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|156938087|ref|YP_001435883.1| - 1.6e-06 27.3 0.0 2.7e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|156938087|ref|YP_001435883.1| - 5e-06 25.6 0.0 9.9e-06 24.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|156938087|ref|YP_001435883.1| - 1.5e-05 25.1 0.1 0.0043 17.2 0.0 3.5 2 1 2 4 4 4 1 AAA domain AAA_16 PF13191.1 gi|156938087|ref|YP_001435883.1| - 7.2e-05 22.8 0.0 0.00027 20.9 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|156938087|ref|YP_001435883.1| - 0.00014 21.7 0.0 0.00047 20.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|156938087|ref|YP_001435883.1| - 0.00016 22.5 0.0 0.00064 20.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|156938087|ref|YP_001435883.1| - 0.00077 19.2 0.0 0.0038 16.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|156938087|ref|YP_001435883.1| - 0.00094 18.9 0.6 0.035 13.7 0.0 2.6 2 0 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|156938087|ref|YP_001435883.1| - 0.0025 17.4 0.0 0.38 10.4 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.1 gi|156938087|ref|YP_001435883.1| - 0.0034 17.7 0.5 0.27 11.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|156938087|ref|YP_001435883.1| - 0.0064 16.0 2.0 0.0081 15.6 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.12 gi|156938087|ref|YP_001435883.1| - 0.0073 15.7 0.0 0.051 12.9 0.0 2.1 1 1 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|156938087|ref|YP_001435883.1| - 0.0077 15.3 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Parvo_NS1 PF01057.12 gi|156938087|ref|YP_001435883.1| - 0.014 14.2 0.0 0.035 12.9 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|156938087|ref|YP_001435883.1| - 0.022 14.3 0.4 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|156938087|ref|YP_001435883.1| - 0.024 13.8 0.0 0.049 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|156938087|ref|YP_001435883.1| - 0.025 14.7 0.0 0.082 13.0 0.0 1.9 2 0 0 2 2 1 0 RNA helicase ABC_tran PF00005.22 gi|156938087|ref|YP_001435883.1| - 0.028 14.7 0.0 0.1 12.9 0.0 1.9 2 0 0 2 2 1 0 ABC transporter AAA_29 PF13555.1 gi|156938087|ref|YP_001435883.1| - 0.041 13.4 0.0 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain TIP49 PF06068.8 gi|156938087|ref|YP_001435883.1| - 0.051 12.2 0.0 0.71 8.5 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus AAA_25 PF13481.1 gi|156938087|ref|YP_001435883.1| - 0.055 12.8 0.0 0.17 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|156938087|ref|YP_001435883.1| - 0.079 12.3 0.0 0.25 10.7 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF4287 PF14117.1 gi|156938087|ref|YP_001435883.1| - 0.08 12.6 1.4 2.4 7.9 0.2 3.0 4 0 0 4 4 2 0 Domain of unknown function (DUF4287) AFG1_ATPase PF03969.11 gi|156938087|ref|YP_001435883.1| - 0.086 11.6 0.0 0.24 10.1 0.0 1.7 2 0 0 2 2 2 0 AFG1-like ATPase Miro PF08477.8 gi|156938087|ref|YP_001435883.1| - 0.087 13.3 0.1 0.44 11.0 0.0 2.1 2 0 0 2 2 2 0 Miro-like protein AAA_19 PF13245.1 gi|156938087|ref|YP_001435883.1| - 0.11 12.2 0.0 0.46 10.2 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain tRNA-synt_1b PF00579.20 gi|156938088|ref|YP_001435884.1| - 1.8e-26 92.9 0.0 2.5e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) FTO_CTD PF12934.2 gi|156938089|ref|YP_001435885.1| - 0.11 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 FTO C-terminal domain Ribosomal_S27 PF01599.14 gi|156938090|ref|YP_001435886.1| - 0.49 10.2 3.8 0.38 10.6 1.0 1.9 2 0 0 2 2 2 0 Ribosomal protein S27a ATP-synt_ab PF00006.20 gi|156938092|ref|YP_001435888.1| - 1.1e-89 299.5 0.0 1.6e-89 299.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|156938092|ref|YP_001435888.1| - 2.8e-18 66.4 0.6 5.2e-18 65.5 0.4 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|156938092|ref|YP_001435888.1| - 8.2e-13 48.3 7.5 1.6e-12 47.4 5.2 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|156938092|ref|YP_001435888.1| - 0.0051 16.9 0.1 0.014 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain DHH PF01368.15 gi|156938093|ref|YP_001435889.1| - 1.5e-05 24.6 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|156938093|ref|YP_001435889.1| - 0.00017 21.1 0.1 0.00046 19.8 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain Methyltransf_26 PF13659.1 gi|156938094|ref|YP_001435890.1| - 8.2e-14 51.6 0.0 1.3e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|156938094|ref|YP_001435890.1| - 1.2e-07 30.9 0.0 1.7e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|156938094|ref|YP_001435890.1| - 4e-07 30.6 0.0 6.9e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|156938094|ref|YP_001435890.1| - 9e-07 28.4 0.0 1.7e-06 27.5 0.0 1.4 2 0 0 2 2 2 1 Conserved hypothetical protein 95 MTS PF05175.9 gi|156938094|ref|YP_001435890.1| - 1.1e-06 28.1 0.0 1.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.6 gi|156938094|ref|YP_001435890.1| - 1.2e-05 24.9 0.0 2.9e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|156938094|ref|YP_001435890.1| - 3.1e-05 24.3 0.0 0.00047 20.5 0.0 2.5 2 1 1 3 3 2 1 Methyltransferase domain Met_10 PF02475.11 gi|156938094|ref|YP_001435890.1| - 7.1e-05 22.4 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|156938094|ref|YP_001435890.1| - 0.00011 21.7 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|156938094|ref|YP_001435890.1| - 0.00092 18.7 0.0 0.11 12.0 0.0 2.1 2 0 0 2 2 2 1 DNA methylase Ubie_methyltran PF01209.13 gi|156938094|ref|YP_001435890.1| - 0.017 14.2 0.1 0.31 10.1 0.1 2.6 1 1 1 2 2 2 0 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|156938094|ref|YP_001435890.1| - 0.056 13.0 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 CMAS PF02353.15 gi|156938094|ref|YP_001435890.1| - 0.078 12.0 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|156938094|ref|YP_001435890.1| - 0.091 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Amidase_2 PF01510.20 gi|156938094|ref|YP_001435890.1| - 0.15 12.1 0.0 0.39 10.7 0.0 1.7 1 1 0 1 1 1 0 N-acetylmuramoyl-L-alanine amidase VIT1 PF01988.14 gi|156938097|ref|YP_001435893.1| - 1.1e-13 51.2 22.6 1.5e-08 34.3 5.2 3.1 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|156938097|ref|YP_001435893.1| - 2e-08 34.6 11.8 2e-08 34.6 8.2 2.4 2 1 0 2 2 2 1 Rubrerythrin COQ7 PF03232.8 gi|156938097|ref|YP_001435893.1| - 0.00026 20.5 0.2 0.46 9.9 0.0 2.5 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.1 gi|156938097|ref|YP_001435893.1| - 0.00076 19.4 3.6 0.099 12.5 0.0 2.6 2 1 0 2 2 2 1 Ferritin-like domain Tad PF13400.1 gi|156938097|ref|YP_001435893.1| - 0.014 15.4 0.3 0.014 15.4 0.2 2.7 3 0 0 3 3 2 0 Putative Flp pilus-assembly TadE/G-like FbpA PF05833.6 gi|156938097|ref|YP_001435893.1| - 0.017 13.6 2.0 0.023 13.2 1.4 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) FA_desaturase_2 PF03405.9 gi|156938097|ref|YP_001435893.1| - 0.026 13.2 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 Fatty acid desaturase Caps_synth_CapC PF14102.1 gi|156938097|ref|YP_001435893.1| - 0.051 13.6 3.5 0.26 11.4 2.1 2.1 2 0 0 2 2 2 0 Capsule biosynthesis CapC DUF3095 PF11294.3 gi|156938097|ref|YP_001435893.1| - 0.092 11.7 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3095) DUF2207 PF09972.4 gi|156938097|ref|YP_001435893.1| - 0.68 8.4 4.8 2.8 6.4 3.3 1.8 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Ferritin PF00210.19 gi|156938097|ref|YP_001435893.1| - 0.79 9.4 6.7 3.6 7.3 0.1 2.4 1 1 0 2 2 2 0 Ferritin-like domain MpPF26 PF07666.6 gi|156938097|ref|YP_001435893.1| - 1 9.2 7.1 14 5.6 5.2 2.1 1 1 1 2 2 2 0 M penetrans paralogue family 26 5TM-5TMR_LYT PF07694.7 gi|156938097|ref|YP_001435893.1| - 1.9 7.7 13.0 0.71 9.1 2.1 2.3 2 0 0 2 2 2 0 5TMR of 5TMR-LYT NHL PF01436.16 gi|156938099|ref|YP_001435895.1| - 0.0097 15.8 0.4 5.5 7.1 0.0 3.4 3 0 0 3 3 3 2 NHL repeat Rogdi_lz PF10259.4 gi|156938100|ref|YP_001435896.1| - 0.045 12.8 0.0 0.054 12.5 0.0 1.1 1 0 0 1 1 1 0 Rogdi leucine zipper containing protein SEO_N PF14576.1 gi|156938100|ref|YP_001435896.1| - 0.099 11.8 0.2 0.14 11.4 0.2 1.1 1 0 0 1 1 1 0 Sieve element occlusion N-terminus Syntaxin-6_N PF09177.6 gi|156938100|ref|YP_001435896.1| - 0.12 12.8 0.1 0.22 11.9 0.1 1.4 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF1843 PF08898.5 gi|156938100|ref|YP_001435896.1| - 0.13 12.3 2.5 3.8 7.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1843) tRNA_bind PF01588.15 gi|156938104|ref|YP_001435900.1| - 1e-14 54.1 0.0 1.5e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain CBS PF00571.23 gi|156938106|ref|YP_001435902.1| - 8.5e-29 99.0 5.3 3.8e-13 48.9 0.1 4.0 4 0 0 4 4 4 3 CBS domain EF-hand_7 PF13499.1 gi|156938106|ref|YP_001435902.1| - 0.067 13.3 0.0 6.4 7.0 0.0 3.5 4 0 0 4 4 4 0 EF-hand domain pair PRC PF05239.11 gi|156938106|ref|YP_001435902.1| - 0.2 11.5 6.5 0.41 10.5 0.2 3.7 4 1 0 4 4 4 0 PRC-barrel domain HTH_AsnC-type PF13404.1 gi|156938107|ref|YP_001435903.1| - 0.12 11.9 0.1 1.2 8.7 0.0 2.9 2 1 0 2 2 2 0 AsnC-type helix-turn-helix domain ATP-synt_F6 PF05511.6 gi|156938107|ref|YP_001435903.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ATP synthase coupling factor 6 TPR_10 PF13374.1 gi|156938107|ref|YP_001435903.1| - 0.97 9.4 3.8 8.3 6.5 0.6 3.7 3 1 1 4 4 4 0 Tetratricopeptide repeat DUF3979 PF13141.1 gi|156938108|ref|YP_001435904.1| - 0.027 14.3 0.0 0.066 13.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3979) DUF2614 PF11023.3 gi|156938109|ref|YP_001435905.1| - 0.015 15.0 3.9 0.019 14.7 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DUF1129 PF06570.6 gi|156938109|ref|YP_001435905.1| - 0.023 14.0 1.8 0.025 13.9 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2842 PF11003.3 gi|156938109|ref|YP_001435905.1| - 0.46 10.3 3.9 0.63 9.9 2.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2842) DUF2776 PF10951.3 gi|156938110|ref|YP_001435906.1| - 0.036 13.1 0.3 0.036 13.1 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2776) CstA PF02554.9 gi|156938111|ref|YP_001435907.1| - 3e-124 414.4 22.6 3e-124 414.4 15.6 2.1 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|156938111|ref|YP_001435907.1| - 1.9e-28 99.3 10.3 1.9e-28 99.3 7.1 3.7 3 1 1 4 4 4 1 C-terminal domain on CstA (DUF4161) TraQ PF09679.5 gi|156938111|ref|YP_001435907.1| - 2.6 8.0 5.3 1.2 9.1 0.0 3.1 3 0 0 3 3 3 0 Type-F conjugative transfer system pilin chaperone (TraQ) ArsA_ATPase PF02374.10 gi|156938113|ref|YP_001435909.1| - 9.2e-67 225.2 0.0 1e-66 225.0 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|156938113|ref|YP_001435909.1| - 4.8e-17 62.0 0.2 6.6e-16 58.2 0.2 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|156938113|ref|YP_001435909.1| - 0.00016 21.6 0.2 0.00078 19.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|156938113|ref|YP_001435909.1| - 0.00084 18.9 0.7 0.17 11.4 0.0 2.7 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein Fer4_NifH PF00142.13 gi|156938113|ref|YP_001435909.1| - 0.0022 17.2 0.0 0.028 13.5 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|156938113|ref|YP_001435909.1| - 0.0067 15.6 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein ParA PF10609.4 gi|156938113|ref|YP_001435909.1| - 0.012 15.4 0.1 0.21 11.5 0.0 2.3 2 0 0 2 2 2 0 ParA/MinD ATPase like SRP54 PF00448.17 gi|156938113|ref|YP_001435909.1| - 0.012 15.0 0.1 0.028 13.8 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|156938113|ref|YP_001435909.1| - 0.032 13.9 0.3 0.11 12.2 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|156938113|ref|YP_001435909.1| - 0.037 14.1 0.1 0.12 12.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|156938113|ref|YP_001435909.1| - 0.068 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|156938113|ref|YP_001435909.1| - 0.086 12.2 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|156938113|ref|YP_001435909.1| - 0.22 10.8 1.2 0.96 8.8 0.8 2.0 1 1 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|156938113|ref|YP_001435909.1| - 0.36 11.0 2.0 20 5.3 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Methyltransf_31 PF13847.1 gi|156938115|ref|YP_001435911.1| - 2.2e-11 43.5 0.0 2.9e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|156938115|ref|YP_001435911.1| - 2.6e-10 40.8 0.0 3.4e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|156938115|ref|YP_001435911.1| - 1.1e-09 38.2 0.0 2.8e-09 37.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|156938115|ref|YP_001435911.1| - 5.4e-08 32.4 0.0 4.3e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.1 gi|156938115|ref|YP_001435911.1| - 5.3e-07 29.9 0.0 7.1e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|156938115|ref|YP_001435911.1| - 1.2e-06 27.7 0.0 2.3e-06 26.8 0.0 1.3 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|156938115|ref|YP_001435911.1| - 1.3e-05 24.9 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|156938115|ref|YP_001435911.1| - 1.8e-05 23.9 0.0 2.4e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|156938115|ref|YP_001435911.1| - 2.5e-05 23.9 0.1 3.7e-05 23.3 0.1 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|156938115|ref|YP_001435911.1| - 4.8e-05 23.7 0.0 9e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DUF633 PF04816.7 gi|156938115|ref|YP_001435911.1| - 6.8e-05 22.3 0.0 7.7e-05 22.1 0.0 1.3 1 1 0 1 1 1 1 Family of unknown function (DUF633) CMAS PF02353.15 gi|156938115|ref|YP_001435911.1| - 0.00034 19.7 0.0 0.00036 19.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|156938115|ref|YP_001435911.1| - 0.00059 19.2 0.0 0.00077 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|156938115|ref|YP_001435911.1| - 0.0022 17.0 0.0 0.003 16.6 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.11 gi|156938115|ref|YP_001435911.1| - 0.02 14.4 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|156938115|ref|YP_001435911.1| - 0.1 13.1 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain IGPS PF00218.16 gi|156938116|ref|YP_001435912.1| - 5.5e-53 179.6 0.0 6.7e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase ABC_tran PF00005.22 gi|156938117|ref|YP_001435913.1| - 2.8e-29 102.1 0.0 4.2e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|156938117|ref|YP_001435913.1| - 2.1e-15 56.8 0.1 4.2e-15 55.8 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|156938117|ref|YP_001435913.1| - 1.1e-08 35.4 0.0 1.9e-05 24.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|156938117|ref|YP_001435913.1| - 3.7e-05 23.8 0.5 0.0031 17.6 0.4 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|156938117|ref|YP_001435913.1| - 0.00015 21.0 0.0 0.0035 16.6 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|156938117|ref|YP_001435913.1| - 0.00082 17.9 0.0 0.031 12.7 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|156938117|ref|YP_001435913.1| - 0.00088 18.7 0.0 0.076 12.4 0.0 2.9 2 1 1 3 3 3 1 AAA-like domain DUF258 PF03193.11 gi|156938117|ref|YP_001435913.1| - 0.0022 17.1 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|156938117|ref|YP_001435913.1| - 0.0024 17.7 0.0 0.0094 15.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|156938117|ref|YP_001435913.1| - 0.0097 15.3 0.1 0.058 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|156938117|ref|YP_001435913.1| - 0.017 15.9 0.7 0.054 14.3 0.4 2.1 2 1 0 2 2 1 0 AAA domain AAA_29 PF13555.1 gi|156938117|ref|YP_001435913.1| - 0.028 13.9 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|156938117|ref|YP_001435913.1| - 0.031 14.6 0.0 0.063 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|156938117|ref|YP_001435913.1| - 0.035 14.6 0.0 0.097 13.1 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein AAA_16 PF13191.1 gi|156938117|ref|YP_001435913.1| - 0.039 13.9 0.0 0.089 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Sigma54_activ_2 PF14532.1 gi|156938117|ref|YP_001435913.1| - 0.046 13.7 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|156938117|ref|YP_001435913.1| - 0.055 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain KaiC PF06745.8 gi|156938117|ref|YP_001435913.1| - 0.058 12.5 2.3 0.48 9.5 0.0 2.4 3 0 0 3 3 3 0 KaiC RNA_helicase PF00910.17 gi|156938117|ref|YP_001435913.1| - 0.1 12.7 0.1 0.29 11.3 0.1 1.9 1 1 0 1 1 1 0 RNA helicase AAA PF00004.24 gi|156938117|ref|YP_001435913.1| - 0.12 12.5 0.3 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|156938117|ref|YP_001435913.1| - 0.24 10.4 0.0 12 4.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Nol1_Nop2_Fmu PF01189.12 gi|156938118|ref|YP_001435914.1| - 1.4e-08 34.4 0.0 5.2e-07 29.3 0.0 2.1 1 1 1 2 2 2 2 NOL1/NOP2/sun family TRAPP PF04051.11 gi|156938119|ref|YP_001435915.1| - 8.8e-07 28.5 0.0 1.1e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Transport protein particle (TRAPP) component V4R PF02830.13 gi|156938119|ref|YP_001435915.1| - 0.00011 21.9 0.0 0.00039 20.2 0.0 1.8 2 0 0 2 2 2 1 V4R domain Aminotran_1_2 PF00155.16 gi|156938120|ref|YP_001435916.1| - 4.8e-39 134.3 0.0 6e-39 134.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DMRL_synthase PF00885.14 gi|156938121|ref|YP_001435917.1| - 9e-14 51.3 0.0 1e-13 51.1 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase SPOUT_MTase_2 PF14419.1 gi|156938122|ref|YP_001435918.1| - 1.7e-62 209.7 0.8 3.4e-62 208.6 0.6 1.5 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|156938122|ref|YP_001435918.1| - 5.8e-24 84.6 7.2 8.2e-23 80.8 1.7 3.0 3 0 0 3 3 3 1 THUMP domain DUF531 PF04407.7 gi|156938122|ref|YP_001435918.1| - 0.0028 17.5 0.0 0.0042 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF531) DUF217 PF02697.9 gi|156938122|ref|YP_001435918.1| - 0.035 14.3 0.1 2.9 8.2 0.0 2.9 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 Trm56 PF01994.11 gi|156938122|ref|YP_001435918.1| - 0.069 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 tRNA ribose 2'-O-methyltransferase, aTrm56 BPD_transp_1 PF00528.17 gi|156938123|ref|YP_001435919.1| - 2.9e-36 124.7 19.3 2.9e-36 124.7 13.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Coa1 PF08695.5 gi|156938123|ref|YP_001435919.1| - 0.077 12.5 0.1 0.2 11.1 0.0 1.7 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 Peptidase_S9_N PF02897.10 gi|156938123|ref|YP_001435919.1| - 0.16 10.4 0.0 0.22 10.0 0.0 1.1 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain DUF3733 PF12534.3 gi|156938123|ref|YP_001435919.1| - 0.66 9.3 0.0 0.66 9.3 0.0 3.9 4 0 0 4 4 4 0 Leucine-rich repeat containing protein 8 DUF2149 PF09919.4 gi|156938123|ref|YP_001435919.1| - 3 8.0 8.0 0.095 12.8 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) BPD_transp_1 PF00528.17 gi|156938124|ref|YP_001435920.1| - 9.8e-25 87.1 18.5 9.8e-25 87.1 7.6 2.3 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|156938125|ref|YP_001435921.1| - 9.4e-26 90.7 0.0 1.4e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|156938125|ref|YP_001435921.1| - 2.4e-20 72.6 0.3 3.9e-20 71.9 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|156938125|ref|YP_001435921.1| - 2.2e-10 41.0 0.0 8.6e-09 35.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|156938125|ref|YP_001435921.1| - 4e-05 22.9 0.0 7.8e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain PRK PF00485.13 gi|156938125|ref|YP_001435921.1| - 0.00016 21.2 0.0 0.00024 20.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|156938125|ref|YP_001435921.1| - 0.0046 17.2 0.0 0.19 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|156938125|ref|YP_001435921.1| - 0.0086 15.5 0.1 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|156938125|ref|YP_001435921.1| - 0.044 13.1 0.0 0.39 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|156938125|ref|YP_001435921.1| - 0.052 13.0 0.1 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family CbiA PF01656.18 gi|156938125|ref|YP_001435921.1| - 0.058 12.8 0.7 0.45 9.9 0.5 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|156938125|ref|YP_001435921.1| - 0.072 13.0 0.1 0.17 11.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|156938125|ref|YP_001435921.1| - 0.083 11.9 0.0 0.29 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|156938125|ref|YP_001435921.1| - 0.12 12.6 0.1 0.8 9.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|156938125|ref|YP_001435921.1| - 0.15 11.5 0.3 2.3 7.5 0.1 2.1 1 1 1 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|156938126|ref|YP_001435922.1| - 2.6e-22 79.5 0.0 3.7e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|156938126|ref|YP_001435922.1| - 4.6e-08 33.3 0.1 8.7e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|156938126|ref|YP_001435922.1| - 2e-07 30.5 0.0 0.015 14.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|156938126|ref|YP_001435922.1| - 3e-05 24.4 0.0 8.8e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|156938126|ref|YP_001435922.1| - 0.00012 21.4 0.0 0.00023 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|156938126|ref|YP_001435922.1| - 0.0013 17.8 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|156938126|ref|YP_001435922.1| - 0.0017 18.3 0.2 0.0021 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|156938126|ref|YP_001435922.1| - 0.012 15.7 0.1 0.024 14.8 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|156938126|ref|YP_001435922.1| - 0.014 15.5 0.1 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|156938126|ref|YP_001435922.1| - 0.016 15.0 0.0 0.16 11.8 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|156938126|ref|YP_001435922.1| - 0.024 14.4 0.0 0.085 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|156938126|ref|YP_001435922.1| - 0.026 13.9 0.0 0.078 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|156938126|ref|YP_001435922.1| - 0.045 13.4 0.1 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_15 PF13175.1 gi|156938126|ref|YP_001435922.1| - 0.046 12.7 0.0 0.052 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.16 gi|156938126|ref|YP_001435922.1| - 0.05 13.0 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_10 PF12846.2 gi|156938126|ref|YP_001435922.1| - 0.057 12.8 0.1 0.083 12.3 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_ATPase PF09818.4 gi|156938126|ref|YP_001435922.1| - 0.11 11.0 0.1 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_5 PF07728.9 gi|156938126|ref|YP_001435922.1| - 0.14 11.8 0.1 0.4 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|156938126|ref|YP_001435922.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|156938126|ref|YP_001435922.1| - 0.15 12.0 0.5 0.34 10.8 0.1 1.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase DUF2813 PF11398.3 gi|156938126|ref|YP_001435922.1| - 0.16 11.0 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) MobB PF03205.9 gi|156938126|ref|YP_001435922.1| - 0.16 11.6 0.1 1.2 8.8 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|156938127|ref|YP_001435923.1| - 1.1e-11 44.5 11.4 1.1e-11 44.5 7.9 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4233 PF14017.1 gi|156938127|ref|YP_001435923.1| - 0.063 13.2 1.3 0.23 11.4 0.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) SBP_bac_11 PF13531.1 gi|156938128|ref|YP_001435924.1| - 4.3e-30 105.0 0.0 4.8e-30 104.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|156938128|ref|YP_001435924.1| - 2.7e-06 26.9 0.0 3.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_1 PF01547.20 gi|156938128|ref|YP_001435924.1| - 2.8e-06 27.2 0.1 0.0064 16.2 0.1 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|156938128|ref|YP_001435924.1| - 0.001 18.4 0.0 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|156938128|ref|YP_001435924.1| - 0.0043 16.8 0.0 0.67 9.6 0.0 2.6 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|156938128|ref|YP_001435924.1| - 0.021 13.7 0.0 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 PBP superfamily domain SPW PF03779.9 gi|156938128|ref|YP_001435924.1| - 0.12 11.7 0.5 6.5 6.2 0.0 2.3 2 0 0 2 2 2 0 SPW repeat UPF0122 PF04297.9 gi|156938129|ref|YP_001435925.1| - 5.2e-05 23.1 0.1 0.00011 22.1 0.1 1.6 1 1 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4_2 PF08281.7 gi|156938129|ref|YP_001435925.1| - 0.00061 19.1 0.0 0.001 18.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TFX_C PF14601.1 gi|156938129|ref|YP_001435925.1| - 0.00063 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|156938129|ref|YP_001435925.1| - 0.008 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TcdB_N PF12918.2 gi|156938129|ref|YP_001435925.1| - 0.021 14.8 0.3 0.048 13.7 0.0 1.7 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain DUF658 PF04936.7 gi|156938129|ref|YP_001435925.1| - 0.024 14.4 0.8 0.052 13.4 0.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF658) MarR PF01047.17 gi|156938129|ref|YP_001435925.1| - 0.029 14.0 0.1 0.067 12.9 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_17 PF12728.2 gi|156938129|ref|YP_001435925.1| - 0.03 14.5 0.1 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|156938129|ref|YP_001435925.1| - 0.031 13.8 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) HTH_23 PF13384.1 gi|156938129|ref|YP_001435925.1| - 0.031 13.9 0.0 0.074 12.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF2774 PF11242.3 gi|156938129|ref|YP_001435925.1| - 0.036 14.0 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) MarR_2 PF12802.2 gi|156938129|ref|YP_001435925.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF4535 PF15054.1 gi|156938129|ref|YP_001435925.1| - 0.062 12.7 0.4 0.21 11.0 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4535) HTH_7 PF02796.10 gi|156938129|ref|YP_001435925.1| - 0.065 13.0 0.0 0.21 11.5 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Aminotran_3 PF00202.16 gi|156938129|ref|YP_001435925.1| - 0.07 11.9 0.0 0.085 11.6 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III GerE PF00196.14 gi|156938129|ref|YP_001435925.1| - 0.29 10.4 2.1 0.33 10.2 0.2 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family SNase PF00565.12 gi|156938130|ref|YP_001435926.1| - 0.00082 19.6 0.0 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue eRF1_2 PF03464.10 gi|156938131|ref|YP_001435927.1| - 4.5e-30 104.6 0.0 8.5e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|156938131|ref|YP_001435927.1| - 4.6e-19 68.3 0.0 8.9e-19 67.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|156938131|ref|YP_001435927.1| - 6.8e-15 55.3 0.9 1.3e-13 51.1 0.2 2.7 2 1 0 2 2 2 1 eRF1 domain 3 SpoU_sub_bind PF08032.7 gi|156938131|ref|YP_001435927.1| - 0.021 15.0 0.1 0.14 12.3 0.0 2.5 2 1 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding YfdX PF10938.3 gi|156938131|ref|YP_001435927.1| - 0.25 11.0 2.8 1.5 8.4 0.1 2.4 2 0 0 2 2 2 0 YfdX protein Mst1_SARAH PF11629.3 gi|156938131|ref|YP_001435927.1| - 0.25 11.1 0.2 0.25 11.1 0.1 2.1 3 0 0 3 3 3 0 C terminal SARAH domain of Mst1 GATase PF00117.23 gi|156938132|ref|YP_001435928.1| - 1.7e-29 102.6 0.0 1.9e-29 102.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|156938132|ref|YP_001435928.1| - 5.2e-10 39.1 0.0 8.8e-09 35.1 0.0 2.5 2 1 0 2 2 2 1 Peptidase C26 Ribosomal_L2_C PF03947.13 gi|156938133|ref|YP_001435929.1| - 2.8e-42 143.5 1.2 3.8e-42 143.1 0.8 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|156938133|ref|YP_001435929.1| - 3e-09 36.7 0.0 8.8e-08 32.0 0.0 2.5 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain DEAD PF00270.24 gi|156938134|ref|YP_001435930.1| - 2.9e-35 121.2 0.1 4.4e-34 117.4 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|156938134|ref|YP_001435930.1| - 3.6e-30 105.0 1.1 8.2e-29 100.6 0.1 2.7 3 0 0 3 3 3 1 DEAD/H associated Helicase_C PF00271.26 gi|156938134|ref|YP_001435930.1| - 2.6e-21 75.2 0.0 1.5e-18 66.3 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|156938134|ref|YP_001435930.1| - 6.7e-06 26.0 0.0 3.5e-05 23.7 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|156938134|ref|YP_001435930.1| - 0.0015 17.3 0.6 0.0034 16.2 0.0 1.8 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|156938134|ref|YP_001435930.1| - 0.008 15.6 0.7 0.027 13.8 0.1 2.3 3 1 0 3 3 3 1 AAA domain HTH_45 PF14947.1 gi|156938134|ref|YP_001435930.1| - 0.025 14.3 0.2 0.091 12.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix AAA_22 PF13401.1 gi|156938134|ref|YP_001435930.1| - 0.032 14.3 0.6 0.27 11.3 0.4 2.5 1 1 0 1 1 1 0 AAA domain HypA PF01155.14 gi|156938134|ref|YP_001435930.1| - 0.041 13.5 1.1 0.24 11.0 0.8 2.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_19 PF13245.1 gi|156938134|ref|YP_001435930.1| - 0.076 12.7 0.1 0.64 9.8 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|156938134|ref|YP_001435930.1| - 0.11 11.9 0.3 11 5.4 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family Desulfoferrodox PF01880.13 gi|156938135|ref|YP_001435931.1| - 1.6e-29 102.0 0.0 1.8e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|156938135|ref|YP_001435931.1| - 0.00028 20.8 0.0 0.00039 20.4 0.0 1.3 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY DUF108 PF01958.13 gi|156938136|ref|YP_001435932.1| - 1.4e-33 114.9 1.8 2.5e-33 114.1 1.2 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|156938136|ref|YP_001435932.1| - 1.4e-14 54.5 0.1 6.3e-14 52.3 0.1 2.2 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|156938136|ref|YP_001435932.1| - 1.2e-05 25.1 0.1 0.00021 21.1 0.0 2.4 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|156938136|ref|YP_001435932.1| - 1.9e-05 23.9 0.0 6.4e-05 22.1 0.0 1.8 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|156938136|ref|YP_001435932.1| - 2.4e-05 24.6 0.5 0.00067 20.0 0.0 2.8 1 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|156938136|ref|YP_001435932.1| - 8.1e-05 22.6 0.1 0.0011 18.9 0.0 2.3 1 1 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|156938136|ref|YP_001435932.1| - 0.0011 18.8 1.3 0.0089 15.9 0.1 2.7 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|156938136|ref|YP_001435932.1| - 0.0015 18.0 0.0 0.034 13.5 0.0 2.4 1 1 1 3 3 3 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|156938136|ref|YP_001435932.1| - 0.011 16.0 0.2 0.072 13.3 0.0 2.1 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|156938136|ref|YP_001435932.1| - 0.021 14.5 1.8 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 Rossmann-like domain ThiF PF00899.16 gi|156938136|ref|YP_001435932.1| - 0.68 9.7 2.9 15 5.3 0.4 2.9 2 1 1 3 3 3 0 ThiF family QRPTase_C PF01729.14 gi|156938137|ref|YP_001435933.1| - 3.1e-46 156.9 0.1 4e-46 156.6 0.0 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|156938137|ref|YP_001435933.1| - 2e-05 24.3 0.0 4.7e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|156938137|ref|YP_001435933.1| - 0.1 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family MMPL PF03176.10 gi|156938138|ref|YP_001435934.1| - 6.8e-18 64.4 29.1 2.6e-11 42.8 4.8 2.4 2 0 0 2 2 2 2 MMPL family DUF600 PF04634.7 gi|156938138|ref|YP_001435934.1| - 6.6 6.7 8.8 0.87 9.6 2.7 2.1 2 1 1 3 3 3 0 Protein of unknown function, DUF600 GGDN PF05165.7 gi|156938139|ref|YP_001435935.1| - 2.4e-23 82.4 0.0 2.9e-13 49.4 0.0 2.1 1 1 1 2 2 2 2 GGDN family R_equi_Vir PF05526.6 gi|156938139|ref|YP_001435935.1| - 0.16 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Rhodococcus equi virulence-associated protein Radical_SAM PF04055.16 gi|156938140|ref|YP_001435936.1| - 5.9e-07 29.8 0.0 0.00015 21.9 0.0 2.9 2 1 0 2 2 2 2 Radical SAM superfamily Saccharop_dh PF03435.13 gi|156938140|ref|YP_001435936.1| - 0.19 10.6 0.3 2.4 7.0 0.0 2.5 3 0 0 3 3 3 0 Saccharopine dehydrogenase Uteroglobin PF01099.12 gi|156938140|ref|YP_001435936.1| - 0.24 11.2 2.8 1.8 8.4 0.1 3.3 3 0 0 3 3 3 0 Uteroglobin family SPOR PF05036.8 gi|156938142|ref|YP_001435938.1| - 0.13 12.4 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 Sporulation related domain PmbA_TldD PF01523.11 gi|156938143|ref|YP_001435939.1| - 3.5e-56 190.6 1.7 8.2e-55 186.1 0.8 2.0 2 0 0 2 2 2 2 Putative modulator of DNA gyrase Atu4866 PF11512.3 gi|156938144|ref|YP_001435940.1| - 0.062 13.0 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Agrobacterium tumefaciens protein Atu4866 OMPdecase PF00215.19 gi|156938145|ref|YP_001435941.1| - 2.2e-22 79.5 0.0 2.5e-22 79.4 0.0 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family LdpA_C PF12617.3 gi|156938145|ref|YP_001435941.1| - 0.0017 17.6 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 Iron-Sulfur binding protein C terminal Multi-haem_cyto PF13447.1 gi|156938146|ref|YP_001435942.1| - 1.6e-35 122.4 21.1 3.7e-23 81.9 2.9 4.9 5 0 0 5 5 5 4 Seven times multi-haem cytochrome CxxCH Cytochrome_C7 PF14522.1 gi|156938146|ref|YP_001435942.1| - 6.3e-10 38.5 24.1 0.0054 16.3 3.2 6.0 4 1 2 6 6 6 5 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|156938146|ref|YP_001435942.1| - 4.7e-07 29.9 17.8 0.001 19.1 0.7 4.8 3 2 2 5 5 5 3 Cytochrome c554 and c-prime Cytochrom_c3_2 PF14537.1 gi|156938146|ref|YP_001435942.1| - 1.6e-06 28.3 24.6 0.011 16.0 3.9 5.7 4 2 0 4 4 4 2 Cytochrome c3 Paired_CXXCH_1 PF09699.5 gi|156938146|ref|YP_001435942.1| - 1.3e-05 24.6 26.1 3.1 7.3 3.5 7.3 7 1 0 7 7 7 3 Doubled CXXCH motif (Paired_CXXCH_1) RSD-2 PF07547.8 gi|156938146|ref|YP_001435942.1| - 0.02 14.9 0.1 0.076 13.1 0.0 1.9 1 0 0 1 1 1 0 RSD-2 N-terminal domain Cytochrom_NNT PF03264.9 gi|156938146|ref|YP_001435942.1| - 0.03 13.7 24.5 0.079 12.3 0.0 6.0 4 1 1 5 5 5 0 NapC/NirT cytochrome c family, N-terminal region Cytochrom_CIII PF02085.11 gi|156938146|ref|YP_001435942.1| - 1.4 9.0 30.0 9.7 6.3 0.2 5.9 4 2 0 5 5 5 0 Class III cytochrome C family PAPS_reduct PF01507.14 gi|156938147|ref|YP_001435943.1| - 7e-35 120.3 0.0 1.8e-34 119.0 0.0 1.6 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|156938147|ref|YP_001435943.1| - 3e-08 33.9 8.3 7.4e-08 32.6 5.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156938147|ref|YP_001435943.1| - 1.2e-07 31.4 8.7 1.1e-06 28.3 6.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156938147|ref|YP_001435943.1| - 1.9e-06 28.0 7.0 0.0027 17.9 0.5 2.5 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156938147|ref|YP_001435943.1| - 1.2e-05 25.2 2.4 0.14 12.1 0.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156938147|ref|YP_001435943.1| - 1.5e-05 24.3 10.4 0.017 14.6 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156938147|ref|YP_001435943.1| - 2e-05 24.8 3.8 0.05 13.9 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|156938147|ref|YP_001435943.1| - 5.6e-05 22.8 10.6 0.041 13.8 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|156938147|ref|YP_001435943.1| - 7.6e-05 22.4 10.4 7.6e-05 22.4 7.2 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156938147|ref|YP_001435943.1| - 0.0001 22.6 5.0 0.0062 16.9 1.1 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156938147|ref|YP_001435943.1| - 0.00026 20.7 10.2 0.086 12.7 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156938147|ref|YP_001435943.1| - 0.0021 18.7 12.1 0.063 14.0 1.1 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain NAD_synthase PF02540.12 gi|156938147|ref|YP_001435943.1| - 0.0036 16.2 0.0 0.0061 15.4 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Fer4_15 PF13459.1 gi|156938147|ref|YP_001435943.1| - 0.046 14.2 3.6 1.4 9.5 0.0 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|156938147|ref|YP_001435943.1| - 0.13 12.1 3.4 0.28 11.0 2.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|156938147|ref|YP_001435943.1| - 0.44 11.0 12.7 1.1 9.7 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|156938147|ref|YP_001435943.1| - 1.5 9.5 27.2 0.15 12.7 1.8 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain ROK PF00480.15 gi|156938148|ref|YP_001435944.1| - 8.8e-27 94.0 0.0 1.2e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 ROK family Glucokinase PF02685.11 gi|156938148|ref|YP_001435944.1| - 1.1e-05 24.4 0.0 4.4e-05 22.4 0.0 2.0 2 1 0 2 2 2 1 Glucokinase zinc_ribbon_2 PF13240.1 gi|156938149|ref|YP_001435945.1| - 0.0013 18.1 0.7 1.2 8.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|156938149|ref|YP_001435945.1| - 0.002 17.8 0.6 0.0048 16.6 0.4 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156938149|ref|YP_001435945.1| - 0.0022 17.1 0.8 1.4 8.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|156938149|ref|YP_001435945.1| - 0.022 14.5 0.1 0.05 13.4 0.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|156938149|ref|YP_001435945.1| - 0.023 14.9 0.0 0.042 14.1 0.0 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF2296 PF10058.4 gi|156938149|ref|YP_001435945.1| - 0.026 14.2 1.0 6.6 6.5 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn-ribbon_8 PF09723.5 gi|156938149|ref|YP_001435945.1| - 0.026 14.4 0.1 4.1 7.4 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_L32p PF01783.18 gi|156938149|ref|YP_001435945.1| - 0.04 14.1 0.4 6.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Ribosomal L32p protein family PhnA_Zn_Ribbon PF08274.7 gi|156938149|ref|YP_001435945.1| - 0.061 13.1 2.9 0.36 10.6 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Cys_rich_CPXG PF14255.1 gi|156938149|ref|YP_001435945.1| - 0.074 12.8 2.8 2.8 7.8 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ISL3 PF14690.1 gi|156938149|ref|YP_001435945.1| - 0.09 12.8 0.8 8 6.5 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 E7 PF00527.13 gi|156938149|ref|YP_001435945.1| - 0.11 12.7 0.2 0.27 11.4 0.1 1.7 1 1 0 1 1 1 0 E7 protein, Early protein TFIIS_C PF01096.13 gi|156938149|ref|YP_001435945.1| - 0.12 11.9 1.0 2.6 7.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Elf1 PF05129.8 gi|156938149|ref|YP_001435945.1| - 0.19 11.4 1.4 8.4 6.1 0.1 2.4 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|156938149|ref|YP_001435945.1| - 0.19 11.0 1.8 4.2 6.7 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding CpXC PF14353.1 gi|156938149|ref|YP_001435945.1| - 0.32 10.9 2.2 7.1 6.5 0.2 2.7 2 1 0 2 2 2 0 CpXC protein Sgf11 PF08209.6 gi|156938149|ref|YP_001435945.1| - 0.48 9.7 3.4 3.2 7.1 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|156938149|ref|YP_001435945.1| - 1 9.0 5.6 13 5.6 0.2 2.7 3 0 0 3 3 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|156938149|ref|YP_001435945.1| - 1.1 8.9 7.0 5.8 6.5 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain HSP20 PF00011.16 gi|156938150|ref|YP_001435946.1| - 3.4e-10 39.7 5.3 1.8e-08 34.1 3.7 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|156938150|ref|YP_001435946.1| - 1.2e-08 34.7 0.1 1.6e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|156938150|ref|YP_001435946.1| - 5.2e-07 30.1 0.2 8.4e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 CS domain PIH1 PF08190.7 gi|156938150|ref|YP_001435946.1| - 0.011 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Upf2 PF04050.9 gi|156938150|ref|YP_001435946.1| - 4.3 7.0 7.3 14 5.4 0.5 2.1 2 0 0 2 2 2 0 Up-frameshift suppressor 2 TetR_N PF00440.18 gi|156938151|ref|YP_001435947.1| - 3.2e-17 61.8 0.0 4.9e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family LacI PF00356.16 gi|156938151|ref|YP_001435947.1| - 0.0061 16.1 0.1 1.1 8.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, lacI family HTH_23 PF13384.1 gi|156938151|ref|YP_001435947.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Orthopox_A49R PF06489.6 gi|156938151|ref|YP_001435947.1| - 0.05 13.5 0.5 0.092 12.7 0.3 1.6 1 1 0 1 1 1 0 Orthopoxvirus A49R protein MMR_HSR1_C PF08438.5 gi|156938152|ref|YP_001435948.1| - 3.4e-36 123.8 0.1 5.9e-36 123.0 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|156938152|ref|YP_001435948.1| - 6e-17 61.6 0.1 3.2e-16 59.3 0.0 2.3 2 2 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|156938152|ref|YP_001435948.1| - 5.5e-10 38.9 0.0 1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|156938152|ref|YP_001435948.1| - 0.00017 20.9 0.1 0.00079 18.7 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B LexA_DNA_bind PF01726.11 gi|156938152|ref|YP_001435948.1| - 0.0066 15.9 0.5 0.19 11.3 0.1 2.8 3 0 0 3 3 3 1 LexA DNA binding domain YchF-GTPase_C PF06071.8 gi|156938152|ref|YP_001435948.1| - 0.012 15.3 0.1 0.041 13.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF933) MobB PF03205.9 gi|156938152|ref|YP_001435948.1| - 0.023 14.3 0.0 0.059 13.0 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|156938152|ref|YP_001435948.1| - 0.026 14.9 0.9 0.25 11.8 0.1 2.8 2 1 0 2 2 2 0 Miro-like protein GnsAB PF08178.6 gi|156938152|ref|YP_001435948.1| - 0.055 13.1 1.7 0.16 11.6 0.0 2.4 2 0 0 2 2 2 0 GnsA/GnsB family PQQ PF01011.16 gi|156938152|ref|YP_001435948.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 PQQ enzyme repeat NiFe_hyd_SSU_C PF14720.1 gi|156938153|ref|YP_001435949.1| - 1.7e-25 88.8 0.8 3.1e-25 88.0 0.6 1.5 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.17 gi|156938153|ref|YP_001435949.1| - 1.5e-19 69.9 0.0 3.8e-19 68.5 0.0 1.7 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.14 gi|156938154|ref|YP_001435950.1| - 8.4e-45 153.4 3.1 8.5e-27 94.0 1.5 3.7 1 1 1 2 2 2 2 Nickel-dependent hydrogenase Fer4_17 PF13534.1 gi|156938156|ref|YP_001435952.1| - 8.2e-11 42.0 10.9 9.8e-09 35.4 2.4 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156938156|ref|YP_001435952.1| - 3e-10 39.9 2.9 3e-10 39.9 2.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.11 gi|156938156|ref|YP_001435952.1| - 8e-08 32.1 10.7 2e-05 24.4 0.1 4.2 5 0 0 5 5 5 2 Cysteine-rich domain Fer4_10 PF13237.1 gi|156938156|ref|YP_001435952.1| - 1.5e-06 27.9 7.1 1.9e-06 27.5 3.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156938156|ref|YP_001435952.1| - 1.6e-06 28.3 14.6 4.8e-06 26.8 4.4 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156938156|ref|YP_001435952.1| - 3.5e-06 27.1 7.0 1.6e-05 25.0 3.8 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156938156|ref|YP_001435952.1| - 0.0002 21.7 5.4 0.46 10.9 0.1 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156938156|ref|YP_001435952.1| - 0.0023 17.7 9.7 0.074 12.9 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|156938156|ref|YP_001435952.1| - 0.0038 16.7 13.8 0.0057 16.1 1.6 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|156938156|ref|YP_001435952.1| - 0.007 16.2 2.7 0.007 16.2 1.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|156938156|ref|YP_001435952.1| - 0.2 12.4 10.0 0.85 10.4 0.3 3.1 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|156938156|ref|YP_001435952.1| - 1.7 9.4 22.6 1.8 9.3 3.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156938156|ref|YP_001435952.1| - 2.7 8.5 18.1 0.38 11.1 2.0 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Peptidase_M54 PF07998.6 gi|156938157|ref|YP_001435953.1| - 1e-30 106.9 0.0 2e-30 106.0 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M54 Metallopep PF12044.3 gi|156938157|ref|YP_001435953.1| - 0.00091 17.7 0.2 0.0012 17.4 0.1 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M10 PF00413.19 gi|156938157|ref|YP_001435953.1| - 0.00097 18.8 0.0 0.00097 18.8 0.0 1.1 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|156938157|ref|YP_001435953.1| - 0.018 15.1 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|156938157|ref|YP_001435953.1| - 0.023 13.5 0.0 0.032 13.1 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.8 gi|156938157|ref|YP_001435953.1| - 0.046 13.3 0.0 0.069 12.7 0.0 1.4 2 0 0 2 2 2 0 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.1 gi|156938157|ref|YP_001435953.1| - 0.056 13.9 0.0 0.068 13.7 0.0 1.3 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF1025 PF06262.6 gi|156938157|ref|YP_001435953.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Arginase PF00491.16 gi|156938158|ref|YP_001435954.1| - 1.8e-53 181.6 0.0 2.6e-53 181.1 0.0 1.2 1 1 0 1 1 1 1 Arginase family TFIIB PF00382.14 gi|156938159|ref|YP_001435955.1| - 3.8e-38 129.1 3.6 9.6e-21 73.3 0.4 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|156938159|ref|YP_001435955.1| - 2.8e-18 64.9 1.1 4.7e-18 64.2 0.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|156938159|ref|YP_001435955.1| - 1.1e-07 31.0 4.7 4.4e-05 22.7 0.1 3.2 3 0 0 3 3 3 2 Sigma-70, region 4 RRN7 PF11781.3 gi|156938159|ref|YP_001435955.1| - 5.9e-07 28.8 1.1 1.1e-06 27.9 0.7 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_AsnC-type PF13404.1 gi|156938159|ref|YP_001435955.1| - 6.2e-05 22.4 0.0 0.0025 17.3 0.0 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|156938159|ref|YP_001435955.1| - 0.00013 21.5 0.1 0.22 11.1 0.1 2.6 2 0 0 2 2 2 2 HTH domain Sigma70_r4_2 PF08281.7 gi|156938159|ref|YP_001435955.1| - 0.0005 19.4 0.4 0.026 14.0 0.1 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 Cyclin_C PF02984.14 gi|156938159|ref|YP_001435955.1| - 0.001 19.0 0.0 0.38 10.7 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Ribosomal_S27e PF01667.12 gi|156938159|ref|YP_001435955.1| - 0.0015 18.0 0.3 0.0027 17.2 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|156938159|ref|YP_001435955.1| - 0.0021 18.2 0.3 0.0049 17.1 0.2 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar HTH_24 PF13412.1 gi|156938159|ref|YP_001435955.1| - 0.0067 15.7 0.0 0.2 11.1 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding A2L_zn_ribbon PF08792.5 gi|156938159|ref|YP_001435955.1| - 0.0072 15.7 0.7 0.012 15.0 0.5 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|156938159|ref|YP_001435955.1| - 0.0096 15.7 0.4 0.019 14.7 0.3 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|156938159|ref|YP_001435955.1| - 0.012 15.2 0.2 0.029 14.0 0.2 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|156938159|ref|YP_001435955.1| - 0.014 15.4 0.6 0.029 14.4 0.4 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase GerE PF00196.14 gi|156938159|ref|YP_001435955.1| - 0.018 14.3 0.4 0.16 11.2 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.15 gi|156938159|ref|YP_001435955.1| - 0.022 14.8 0.3 5.4 7.2 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_37 PF13744.1 gi|156938159|ref|YP_001435955.1| - 0.04 13.7 0.3 3.2 7.6 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|156938159|ref|YP_001435955.1| - 0.044 13.4 1.9 9.1 6.0 0.2 2.8 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Y_phosphatase3 PF13350.1 gi|156938159|ref|YP_001435955.1| - 0.097 12.9 0.4 8.5 6.5 0.1 2.6 2 2 0 2 2 2 0 Tyrosine phosphatase family UPF0253 PF06786.7 gi|156938159|ref|YP_001435955.1| - 0.098 12.7 0.2 0.7 10.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) PADR1 PF08063.7 gi|156938159|ref|YP_001435955.1| - 0.11 11.8 0.8 0.21 10.9 0.5 1.4 1 0 0 1 1 1 0 PADR1 (NUC008) domain HRDC PF00570.18 gi|156938159|ref|YP_001435955.1| - 0.12 12.1 3.9 3.8 7.3 0.0 2.9 3 0 0 3 3 3 0 HRDC domain zf-ribbon_3 PF13248.1 gi|156938159|ref|YP_001435955.1| - 1.2 8.4 3.1 12 5.2 2.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain HTH_38 PF13936.1 gi|156938159|ref|YP_001435955.1| - 2.7 7.6 9.9 35 4.0 0.0 4.6 4 1 0 4 4 4 0 Helix-turn-helix domain DUF1886 PF09171.5 gi|156938160|ref|YP_001435956.1| - 2.7e-75 252.5 0.0 3.4e-75 252.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) Pox_A3L PF05288.6 gi|156938160|ref|YP_001435956.1| - 0.25 11.0 2.5 0.23 11.2 0.4 1.9 2 0 0 2 2 2 0 Poxvirus A3L Protein PhosphMutase PF10143.4 gi|156938161|ref|YP_001435957.1| - 1.4e-63 213.5 0.1 2.7e-63 212.6 0.0 1.5 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|156938161|ref|YP_001435957.1| - 1.4e-49 168.8 0.0 1.6e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|156938161|ref|YP_001435957.1| - 0.016 14.5 0.1 0.028 13.7 0.1 1.4 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|156938161|ref|YP_001435957.1| - 0.28 9.8 4.1 1.1 7.8 0.3 2.7 2 1 1 3 3 3 0 Alkaline phosphatase CBS PF00571.23 gi|156938162|ref|YP_001435958.1| - 8.4e-08 31.8 4.3 0.026 14.3 0.0 4.1 4 0 0 4 4 4 3 CBS domain Mut7-C PF01927.11 gi|156938163|ref|YP_001435959.1| - 1.1e-27 96.8 0.4 6.5e-27 94.3 0.2 1.8 1 1 0 1 1 1 1 Mut7-C RNAse domain A2L_zn_ribbon PF08792.5 gi|156938163|ref|YP_001435959.1| - 0.0064 15.9 2.8 0.83 9.1 0.1 2.4 1 1 1 2 2 2 2 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|156938163|ref|YP_001435959.1| - 0.032 14.0 0.2 0.07 12.9 0.1 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|156938163|ref|YP_001435959.1| - 0.63 10.3 3.0 4.9 7.4 2.1 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Fer4_5 PF12801.2 gi|156938164|ref|YP_001435960.1| - 1.1e-13 50.7 18.2 3.1e-09 36.4 0.3 4.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4 PF00037.22 gi|156938164|ref|YP_001435960.1| - 2.7e-12 45.7 17.7 2.2e-06 27.0 1.5 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|156938164|ref|YP_001435960.1| - 3.6e-12 46.3 5.0 1.5e-08 34.7 7.8 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|156938164|ref|YP_001435960.1| - 1.1e-11 44.9 8.6 2.5e-05 24.5 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|156938164|ref|YP_001435960.1| - 2.5e-10 40.2 23.2 5.8e-08 32.6 7.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156938164|ref|YP_001435960.1| - 1.7e-08 34.1 21.9 6.3e-07 29.0 8.0 2.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|156938164|ref|YP_001435960.1| - 3.9e-08 33.5 10.8 0.00024 21.3 1.8 3.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156938164|ref|YP_001435960.1| - 2.4e-06 27.1 21.1 0.002 17.9 1.5 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|156938164|ref|YP_001435960.1| - 4e-06 26.4 11.7 0.00019 21.1 1.2 3.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|156938164|ref|YP_001435960.1| - 3e-05 23.8 16.3 0.002 17.9 8.2 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|156938164|ref|YP_001435960.1| - 3.9e-05 23.9 20.2 0.0038 17.6 1.2 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156938164|ref|YP_001435960.1| - 0.00015 22.4 16.6 0.00058 20.5 0.3 3.5 3 1 1 4 4 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|156938164|ref|YP_001435960.1| - 0.00026 21.0 24.7 0.0025 18.0 3.1 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|156938164|ref|YP_001435960.1| - 0.0027 18.1 5.0 0.0027 18.1 3.4 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Ni_hydr_CYTB PF01292.15 gi|156938164|ref|YP_001435960.1| - 0.036 13.4 0.4 0.036 13.4 0.3 2.0 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 Fer4_13 PF13370.1 gi|156938164|ref|YP_001435960.1| - 0.1 12.9 11.2 0.8 10.1 6.6 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Cytochrom_B_N PF00033.14 gi|156938164|ref|YP_001435960.1| - 0.34 10.2 4.5 0.18 11.1 0.5 2.0 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Fer4_15 PF13459.1 gi|156938164|ref|YP_001435960.1| - 8 7.1 11.0 1.2e+02 3.3 7.6 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|156938165|ref|YP_001435961.1| - 8.7e-15 53.6 33.5 0.00022 20.7 1.0 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|156938165|ref|YP_001435961.1| - 2e-14 53.6 43.1 7.5e-07 29.4 5.3 3.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|156938165|ref|YP_001435961.1| - 3.2e-14 52.5 18.7 4.8e-08 32.7 2.4 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|156938165|ref|YP_001435961.1| - 4e-14 52.6 17.5 4.4e-06 26.8 3.9 3.6 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|156938165|ref|YP_001435961.1| - 6.6e-13 47.9 30.4 0.00093 18.9 2.1 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|156938165|ref|YP_001435961.1| - 5e-12 45.0 32.0 0.00022 20.9 2.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|156938165|ref|YP_001435961.1| - 6.9e-10 38.4 31.7 0.0012 19.0 0.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|156938165|ref|YP_001435961.1| - 7.6e-10 38.6 26.9 3.8e-06 26.8 6.1 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|156938165|ref|YP_001435961.1| - 1.4e-09 37.5 29.1 0.0016 18.1 7.7 3.9 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|156938165|ref|YP_001435961.1| - 2.4e-09 37.8 26.3 0.0012 19.5 1.3 4.7 4 1 1 5 5 4 4 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|156938165|ref|YP_001435961.1| - 6.8e-08 32.8 21.2 0.018 15.4 0.2 4.4 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|156938165|ref|YP_001435961.1| - 3.3e-06 27.2 40.8 0.0043 17.5 2.8 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|156938165|ref|YP_001435961.1| - 9.4e-05 22.6 31.5 0.03 14.6 0.9 4.3 3 2 2 5 5 5 4 4Fe-4S dicluster domain TIM-br_sig_trns PF09370.5 gi|156938165|ref|YP_001435961.1| - 0.018 14.0 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 TIM-barrel signal transduction protein Fer4_13 PF13370.1 gi|156938165|ref|YP_001435961.1| - 3.2 8.2 26.2 0.69 10.3 1.2 4.5 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|156938165|ref|YP_001435961.1| - 4.9 7.8 25.3 0.32 11.5 1.9 4.4 3 1 1 4 4 4 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|156938166|ref|YP_001435962.1| - 1.3e-43 149.3 0.0 3.6e-43 147.9 0.0 1.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|156938166|ref|YP_001435962.1| - 4.4e-21 74.7 0.0 1.1e-20 73.4 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|156938166|ref|YP_001435962.1| - 3.2e-06 26.8 1.0 1e-05 25.2 0.4 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|156938166|ref|YP_001435962.1| - 0.12 12.4 4.3 0.24 11.5 3.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NapD PF03927.8 gi|156938167|ref|YP_001435963.1| - 0.0056 16.4 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 NapD protein AsnC_trans_reg PF01037.16 gi|156938167|ref|YP_001435963.1| - 0.021 14.5 0.0 0.043 13.5 0.0 1.6 1 1 0 1 1 1 0 AsnC family PG_binding_2 PF08823.6 gi|156938167|ref|YP_001435963.1| - 0.08 13.0 0.1 5.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Putative peptidoglycan binding domain SHOCT PF09851.4 gi|156938167|ref|YP_001435963.1| - 0.084 12.3 3.0 0.098 12.1 0.3 2.1 2 0 0 2 2 2 0 Short C-terminal domain DUF2129 PF09902.4 gi|156938167|ref|YP_001435963.1| - 0.095 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2129) FlgD_ig PF13860.1 gi|156938168|ref|YP_001435964.1| - 0.073 12.8 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 FlgD Ig-like domain Radical_SAM PF04055.16 gi|156938169|ref|YP_001435965.1| - 3.5e-07 30.5 2.7 6.7e-07 29.6 0.1 2.6 2 2 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|156938169|ref|YP_001435965.1| - 3e-06 27.2 0.0 9.1e-06 25.7 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|156938169|ref|YP_001435965.1| - 0.0018 18.3 0.0 0.0051 16.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain GTP_EFTU PF00009.22 gi|156938170|ref|YP_001435966.1| - 7.3e-59 198.3 0.0 1e-58 197.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|156938170|ref|YP_001435966.1| - 7.1e-32 109.4 0.1 2.8e-30 104.3 0.0 2.9 1 1 1 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|156938170|ref|YP_001435966.1| - 7e-24 83.4 0.1 2.4e-23 81.7 0.0 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|156938170|ref|YP_001435966.1| - 3e-22 78.2 0.0 8.5e-22 76.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|156938170|ref|YP_001435966.1| - 5.6e-11 42.4 0.1 1.5e-10 41.0 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|156938170|ref|YP_001435966.1| - 4.8e-05 23.2 0.0 0.00012 21.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Cadherin_2 PF08266.7 gi|156938170|ref|YP_001435966.1| - 0.06 12.9 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 Cadherin-like SMC_N PF02463.14 gi|156938172|ref|YP_001435968.1| - 3.5e-23 81.9 21.5 3.2e-22 78.8 14.9 2.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|156938172|ref|YP_001435968.1| - 4.9e-23 82.5 2.5 4.9e-23 82.5 1.7 6.7 1 1 2 4 4 1 1 AAA domain Rad50_zn_hook PF04423.9 gi|156938172|ref|YP_001435968.1| - 8.2e-14 50.8 0.1 8.2e-14 50.8 0.1 8.7 10 0 0 10 10 10 1 Rad50 zinc hook motif AAA_13 PF13166.1 gi|156938172|ref|YP_001435968.1| - 1.7e-13 49.9 60.7 2.2e-09 36.3 7.7 5.5 2 1 2 4 4 4 2 AAA domain AAA_21 PF13304.1 gi|156938172|ref|YP_001435968.1| - 2.5e-10 40.7 13.4 3.1e-06 27.3 0.0 4.0 3 2 0 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|156938172|ref|YP_001435968.1| - 1.9e-08 33.6 0.0 3.6e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|156938172|ref|YP_001435968.1| - 2.8e-07 30.3 0.0 1.3e-06 28.2 0.0 2.2 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|156938172|ref|YP_001435968.1| - 1.1e-06 27.9 30.2 4.8e-05 22.5 0.0 3.5 2 1 1 3 3 3 2 AAA ATPase domain Reo_sigmaC PF04582.7 gi|156938172|ref|YP_001435968.1| - 1.4e-06 27.7 19.8 0.089 11.9 0.1 5.3 2 2 1 4 4 4 4 Reovirus sigma C capsid protein ABC_tran PF00005.22 gi|156938172|ref|YP_001435968.1| - 3.8e-06 27.2 13.1 0.003 17.8 0.0 4.9 2 1 1 3 3 3 2 ABC transporter NPV_P10 PF05531.7 gi|156938172|ref|YP_001435968.1| - 0.00067 19.8 29.2 5.4 7.3 1.1 8.3 4 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein AAA_33 PF13671.1 gi|156938172|ref|YP_001435968.1| - 0.001 18.9 1.2 0.0035 17.2 0.0 2.6 2 0 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|156938172|ref|YP_001435968.1| - 0.0021 17.2 0.1 0.011 14.9 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Phage_GP20 PF06810.6 gi|156938172|ref|YP_001435968.1| - 0.0048 16.3 7.9 0.0048 16.3 5.5 7.6 2 2 4 7 7 6 1 Phage minor structural protein GP20 AAA_25 PF13481.1 gi|156938172|ref|YP_001435968.1| - 0.0051 16.2 7.2 0.044 13.1 0.0 4.2 3 1 1 4 4 4 1 AAA domain Baculo_PEP_C PF04513.7 gi|156938172|ref|YP_001435968.1| - 0.0052 16.6 30.7 2.6 7.8 3.0 6.8 2 2 6 8 8 8 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_27 PF13514.1 gi|156938172|ref|YP_001435968.1| - 0.0068 14.1 93.8 0.21 9.2 30.2 4.6 3 2 2 5 5 5 2 AAA domain HrpB7 PF09486.5 gi|156938172|ref|YP_001435968.1| - 0.0083 16.0 17.6 0.0083 16.0 12.2 5.4 2 2 3 5 5 3 1 Bacterial type III secretion protein (HrpB7) AAA_19 PF13245.1 gi|156938172|ref|YP_001435968.1| - 0.024 14.3 0.1 0.094 12.4 0.1 2.0 1 0 0 1 1 1 0 Part of AAA domain GAS PF13851.1 gi|156938172|ref|YP_001435968.1| - 0.026 13.7 106.3 0.012 14.8 11.8 5.9 3 2 3 6 6 6 0 Growth-arrest specific micro-tubule binding DUF3584 PF12128.3 gi|156938172|ref|YP_001435968.1| - 0.037 11.3 71.0 0.49 7.6 5.4 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3584) Miro PF08477.8 gi|156938172|ref|YP_001435968.1| - 0.04 14.3 3.0 0.092 13.2 0.0 3.1 3 0 0 3 3 2 0 Miro-like protein RNA_helicase PF00910.17 gi|156938172|ref|YP_001435968.1| - 0.13 12.4 0.1 0.41 10.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_22 PF13401.1 gi|156938172|ref|YP_001435968.1| - 0.14 12.2 0.0 0.14 12.2 0.0 5.4 3 2 3 6 6 5 0 AAA domain DNA_ligase_ZBD PF03119.11 gi|156938172|ref|YP_001435968.1| - 0.22 11.2 0.7 0.61 9.8 0.5 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3407 PF11887.3 gi|156938172|ref|YP_001435968.1| - 0.25 10.6 0.5 7.8 5.6 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) Syntaxin-6_N PF09177.6 gi|156938172|ref|YP_001435968.1| - 0.26 11.6 60.6 0.052 13.9 4.0 7.8 3 2 4 8 8 8 0 Syntaxin 6, N-terminal AAA PF00004.24 gi|156938172|ref|YP_001435968.1| - 0.44 10.7 0.0 0.44 10.7 0.0 3.9 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Spc7 PF08317.6 gi|156938172|ref|YP_001435968.1| - 0.53 8.9 92.6 0.18 10.4 8.8 5.6 2 2 3 5 5 5 0 Spc7 kinetochore protein IncA PF04156.9 gi|156938172|ref|YP_001435968.1| - 1.1 8.8 110.4 0.24 10.9 10.1 6.1 2 2 3 5 5 5 0 IncA protein MMR_HSR1 PF01926.18 gi|156938172|ref|YP_001435968.1| - 1.4 8.9 3.9 1.4 8.8 0.1 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase DUF1664 PF07889.7 gi|156938172|ref|YP_001435968.1| - 1.5 8.6 52.0 2.7 7.7 0.4 7.7 2 2 6 8 8 8 0 Protein of unknown function (DUF1664) ADIP PF11559.3 gi|156938172|ref|YP_001435968.1| - 1.5 8.6 87.0 0.37 10.6 2.5 7.1 3 2 3 6 6 5 0 Afadin- and alpha -actinin-Binding DUF948 PF06103.6 gi|156938172|ref|YP_001435968.1| - 2.1 8.2 26.3 3.8 7.4 0.3 6.8 4 3 3 7 7 7 0 Bacterial protein of unknown function (DUF948) DEAD PF00270.24 gi|156938172|ref|YP_001435968.1| - 2.5 7.5 7.7 0.73 9.2 0.0 3.2 2 1 0 2 2 1 0 DEAD/DEAH box helicase CENP-B_N PF04218.8 gi|156938173|ref|YP_001435969.1| - 0.0054 16.1 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_23 PF13384.1 gi|156938173|ref|YP_001435969.1| - 0.0059 16.2 0.2 0.014 15.0 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|156938173|ref|YP_001435969.1| - 0.0064 16.4 0.1 0.019 14.9 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|156938173|ref|YP_001435969.1| - 0.013 14.7 0.0 0.43 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Phage_antitermQ PF06530.7 gi|156938173|ref|YP_001435969.1| - 0.017 14.7 0.1 0.044 13.3 0.0 1.7 2 0 0 2 2 2 0 Phage antitermination protein Q Sigma70_r4 PF04545.11 gi|156938173|ref|YP_001435969.1| - 0.019 14.2 0.1 0.59 9.4 0.1 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 PapB PF03333.8 gi|156938173|ref|YP_001435969.1| - 0.056 13.2 0.0 0.099 12.4 0.0 1.5 1 0 0 1 1 1 0 Adhesin biosynthesis transcription regulatory protein Sigma70_ECF PF07638.6 gi|156938173|ref|YP_001435969.1| - 0.11 12.1 0.2 0.13 11.9 0.1 1.3 1 1 0 1 1 1 0 ECF sigma factor HTH_Tnp_1 PF01527.15 gi|156938173|ref|YP_001435969.1| - 0.11 12.4 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 Transposase OTCace PF00185.19 gi|156938174|ref|YP_001435970.1| - 2.4e-54 183.4 0.0 5.3e-54 182.3 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|156938174|ref|YP_001435970.1| - 1.5e-47 160.8 0.5 3.2e-47 159.7 0.0 1.8 3 0 0 3 3 3 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF1464 PF07318.7 gi|156938175|ref|YP_001435971.1| - 1.1e-09 37.5 0.0 1.3e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Extensin-like_C PF06904.7 gi|156938175|ref|YP_001435971.1| - 0.19 11.5 0.0 6.6 6.4 0.0 2.2 2 0 0 2 2 2 0 Extensin-like protein C-terminus MoeA_N PF03453.12 gi|156938177|ref|YP_001435973.1| - 4.4e-32 110.6 0.0 8e-32 109.8 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|156938177|ref|YP_001435973.1| - 1e-20 73.5 0.0 1.8e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|156938177|ref|YP_001435973.1| - 8.7e-13 48.0 0.1 2e-12 46.8 0.1 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) NAD_synthase PF02540.12 gi|156938178|ref|YP_001435974.1| - 1.1e-66 224.1 0.0 1.3e-66 223.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|156938178|ref|YP_001435974.1| - 1.1e-09 37.3 0.0 6e-06 25.0 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|156938178|ref|YP_001435974.1| - 9.8e-07 28.5 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|156938178|ref|YP_001435974.1| - 0.0002 20.7 0.0 0.00044 19.6 0.0 1.6 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC HTH_23 PF13384.1 gi|156938178|ref|YP_001435974.1| - 0.0019 17.7 0.2 0.046 13.3 0.0 3.0 3 0 0 3 3 3 1 Homeodomain-like domain MarR_2 PF12802.2 gi|156938178|ref|YP_001435974.1| - 0.0061 16.1 0.0 0.023 14.3 0.0 2.0 2 0 0 2 2 2 1 MarR family DUF460 PF04312.8 gi|156938179|ref|YP_001435975.1| - 3.2e-48 162.7 0.3 1.8e-47 160.3 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF460) NPV_P10 PF05531.7 gi|156938179|ref|YP_001435975.1| - 0.015 15.4 2.9 0.29 11.4 0.4 3.7 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.1 gi|156938179|ref|YP_001435975.1| - 0.04 14.3 7.2 3.3 8.2 0.3 3.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Nbl1_Borealin_N PF10444.4 gi|156938179|ref|YP_001435975.1| - 0.19 11.1 7.0 0.42 10.0 0.5 2.8 2 0 0 2 2 2 0 Nbl1 / Borealin N terminal V_ATPase_I PF01496.14 gi|156938179|ref|YP_001435975.1| - 0.25 9.1 12.0 1.1 7.0 4.6 2.3 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.8 gi|156938179|ref|YP_001435975.1| - 0.32 10.3 7.3 0.21 10.9 2.5 2.4 1 1 1 2 2 2 0 fzo-like conserved region Baculo_PEP_C PF04513.7 gi|156938179|ref|YP_001435975.1| - 0.32 10.8 3.3 1.1 9.0 1.2 2.4 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus IncA PF04156.9 gi|156938179|ref|YP_001435975.1| - 0.37 10.3 17.0 0.042 13.4 4.7 3.1 3 0 0 3 3 3 0 IncA protein DUF1664 PF07889.7 gi|156938179|ref|YP_001435975.1| - 0.46 10.2 7.0 0.34 10.7 1.9 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) Macoilin PF09726.4 gi|156938179|ref|YP_001435975.1| - 0.65 8.2 10.0 0.09 11.0 3.8 1.7 1 1 1 2 2 2 0 Transmembrane protein DASH_Dam1 PF08653.5 gi|156938179|ref|YP_001435975.1| - 1.1 9.1 2.9 1.1 9.0 0.0 2.5 3 0 0 3 3 2 0 DASH complex subunit Dam1 TSC22 PF01166.13 gi|156938179|ref|YP_001435975.1| - 4.6 7.2 10.0 2.4 8.1 3.3 3.1 1 1 1 2 2 2 0 TSC-22/dip/bun family DivIC PF04977.10 gi|156938179|ref|YP_001435975.1| - 9.4 5.7 19.3 0.49 9.9 1.6 3.6 3 1 1 4 4 4 0 Septum formation initiator RIO1 PF01163.17 gi|156938180|ref|YP_001435976.1| - 4e-43 146.9 0.0 6e-43 146.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|156938180|ref|YP_001435976.1| - 9.6e-19 67.2 1.7 1.7e-18 66.4 0.8 1.7 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.18 gi|156938180|ref|YP_001435976.1| - 1.2e-06 28.4 0.5 0.018 14.7 0.1 2.8 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|156938180|ref|YP_001435976.1| - 3e-05 23.2 0.0 8.8e-05 21.6 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Rrf2 PF02082.15 gi|156938180|ref|YP_001435976.1| - 0.018 15.1 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Pkinase PF00069.20 gi|156938180|ref|YP_001435976.1| - 0.12 11.4 0.0 0.26 10.3 0.0 1.5 1 1 0 1 1 1 0 Protein kinase domain Choline_kinase PF01633.15 gi|156938180|ref|YP_001435976.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase DED PF01335.16 gi|156938180|ref|YP_001435976.1| - 0.33 11.1 2.3 1.1 9.4 1.6 1.9 1 1 0 1 1 1 0 Death effector domain HTH_19 PF12844.2 gi|156938181|ref|YP_001435977.1| - 2.6e-10 40.1 0.2 7.6e-10 38.7 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|156938181|ref|YP_001435977.1| - 1.2e-09 37.9 0.0 3.2e-09 36.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_17 PF12728.2 gi|156938181|ref|YP_001435977.1| - 6.3e-05 23.1 0.1 0.00036 20.7 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|156938181|ref|YP_001435977.1| - 8.3e-05 22.7 0.0 0.00019 21.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|156938181|ref|YP_001435977.1| - 9.2e-05 22.5 0.0 0.00032 20.8 0.0 1.9 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Phage_CI_repr PF07022.8 gi|156938181|ref|YP_001435977.1| - 0.00051 20.0 0.0 0.0014 18.6 0.0 1.8 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_22 PF13309.1 gi|156938181|ref|YP_001435977.1| - 0.00072 19.2 0.0 0.0018 18.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_11 PF08279.7 gi|156938181|ref|YP_001435977.1| - 0.00075 19.1 0.0 0.0016 18.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain NUMOD1 PF07453.8 gi|156938181|ref|YP_001435977.1| - 0.0025 17.6 0.0 0.0083 15.9 0.0 1.9 2 0 0 2 2 2 1 NUMOD1 domain HTH_10 PF04967.7 gi|156938181|ref|YP_001435977.1| - 0.0051 16.3 0.0 0.15 11.6 0.0 2.9 2 1 1 3 3 3 1 HTH DNA binding domain UPF0122 PF04297.9 gi|156938181|ref|YP_001435977.1| - 0.032 14.2 0.0 0.092 12.7 0.0 1.8 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.1 gi|156938181|ref|YP_001435977.1| - 0.037 13.6 0.0 0.081 12.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Hjc PF01870.13 gi|156938181|ref|YP_001435977.1| - 0.058 12.9 0.1 0.33 10.5 0.0 2.1 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) DUF2481 PF10654.4 gi|156938181|ref|YP_001435977.1| - 0.092 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) CppA_C PF14507.1 gi|156938181|ref|YP_001435977.1| - 0.093 12.9 0.1 9.3 6.4 0.0 2.4 2 0 0 2 2 2 0 CppA C-terminal HTH_37 PF13744.1 gi|156938181|ref|YP_001435977.1| - 0.096 12.4 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RHH_1 PF01402.16 gi|156938181|ref|YP_001435977.1| - 0.11 12.4 0.3 0.5 10.3 0.0 2.4 2 0 0 2 2 1 0 Ribbon-helix-helix protein, copG family HTH_28 PF13518.1 gi|156938181|ref|YP_001435977.1| - 0.13 12.3 0.0 1 9.4 0.0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_AlpA PF05930.7 gi|156938181|ref|YP_001435977.1| - 0.14 11.9 0.0 0.37 10.5 0.0 1.7 1 1 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) DUF61 PF01886.11 gi|156938182|ref|YP_001435978.1| - 9.5e-32 109.6 0.3 1.1e-31 109.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Cren7 PF11520.3 gi|156938183|ref|YP_001435979.1| - 1.9e-05 24.1 1.5 1.9e-05 24.1 1.0 2.2 1 1 1 2 2 2 1 Chromatin protein Cren7 FYDLN_acid PF09538.5 gi|156938183|ref|YP_001435979.1| - 6.1e-05 23.5 3.5 0.12 12.9 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS1595 PF12760.2 gi|156938183|ref|YP_001435979.1| - 0.00021 21.0 0.6 0.14 11.9 0.1 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|156938183|ref|YP_001435979.1| - 0.00036 20.6 3.7 0.51 10.7 0.8 2.3 2 0 0 2 2 2 2 Zinc-finger double domain zf-IS66 PF13005.2 gi|156938183|ref|YP_001435979.1| - 0.0017 18.2 2.1 0.003 17.4 0.1 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 DUF1610 PF07754.6 gi|156938183|ref|YP_001435979.1| - 0.002 18.1 10.2 0.09 12.9 0.6 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|156938183|ref|YP_001435979.1| - 0.0024 17.6 0.2 1.9 8.4 0.0 2.3 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|156938183|ref|YP_001435979.1| - 0.0025 17.2 6.8 0.36 10.3 0.1 2.9 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156938183|ref|YP_001435979.1| - 0.0027 16.8 5.5 0.48 9.6 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.1 gi|156938183|ref|YP_001435979.1| - 0.0031 17.4 0.2 0.0061 16.5 0.0 1.5 1 1 0 1 1 1 1 CpXC protein OrfB_Zn_ribbon PF07282.6 gi|156938183|ref|YP_001435979.1| - 0.005 16.4 0.9 3 7.5 0.0 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|156938183|ref|YP_001435979.1| - 0.008 15.8 4.3 0.3 10.8 0.4 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|156938183|ref|YP_001435979.1| - 0.0094 15.8 2.3 0.62 10.0 0.2 2.4 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|156938183|ref|YP_001435979.1| - 0.01 15.6 2.5 0.069 12.9 1.7 2.0 1 1 0 1 1 1 0 Double zinc ribbon Rep_fac-A_C PF08646.5 gi|156938183|ref|YP_001435979.1| - 0.01 15.5 2.1 0.073 12.7 0.0 2.4 1 1 2 3 3 3 0 Replication factor-A C terminal domain TF_Zn_Ribbon PF08271.7 gi|156938183|ref|YP_001435979.1| - 0.011 15.0 2.1 2 7.7 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ZPR1 PF03367.8 gi|156938183|ref|YP_001435979.1| - 0.013 14.7 2.2 0.098 11.8 1.5 2.1 1 1 0 1 1 1 0 ZPR1 zinc-finger domain DNA_RNApol_7kD PF03604.8 gi|156938183|ref|YP_001435979.1| - 0.016 14.6 2.1 0.51 9.8 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|156938183|ref|YP_001435979.1| - 0.016 14.7 2.8 0.5 10.0 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|156938183|ref|YP_001435979.1| - 0.019 15.0 4.1 1.3 9.0 0.1 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-3CxxC PF13695.1 gi|156938183|ref|YP_001435979.1| - 0.019 15.1 1.9 0.066 13.4 0.3 2.2 2 1 0 2 2 2 0 Zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|156938183|ref|YP_001435979.1| - 0.02 14.6 1.2 5 6.9 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|156938183|ref|YP_001435979.1| - 0.035 13.6 3.3 1.3 8.6 0.0 2.7 3 0 0 3 3 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|156938183|ref|YP_001435979.1| - 0.04 13.6 1.4 1.6 8.5 0.1 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Rubredoxin PF00301.15 gi|156938183|ref|YP_001435979.1| - 0.053 13.3 3.3 3.4 7.6 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_4 PF13717.1 gi|156938183|ref|YP_001435979.1| - 0.1 12.3 4.5 2 8.1 0.1 2.7 3 0 0 3 3 2 0 zinc-ribbon domain DUF4428 PF14471.1 gi|156938183|ref|YP_001435979.1| - 0.11 12.2 2.3 0.29 10.9 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) HypA PF01155.14 gi|156938183|ref|YP_001435979.1| - 0.11 12.2 0.3 0.3 10.7 0.1 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1936 PF09151.5 gi|156938183|ref|YP_001435979.1| - 0.11 11.9 5.1 6 6.4 3.2 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) zf-NADH-PPase PF09297.6 gi|156938183|ref|YP_001435979.1| - 0.12 11.8 2.0 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|156938183|ref|YP_001435979.1| - 0.13 11.5 2.1 3.9 6.8 0.3 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding UPF0515 PF15135.1 gi|156938183|ref|YP_001435979.1| - 0.14 11.2 0.9 0.19 10.7 0.4 1.5 1 1 0 1 1 1 0 Uncharacterised protein UPF0515 Sgf11 PF08209.6 gi|156938183|ref|YP_001435979.1| - 0.2 10.9 3.3 5.7 6.3 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Ogr_Delta PF04606.7 gi|156938183|ref|YP_001435979.1| - 0.25 11.0 1.5 8.6 6.1 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-HYPF PF07503.7 gi|156938183|ref|YP_001435979.1| - 0.32 10.4 2.6 5.5 6.4 0.1 2.3 2 0 0 2 2 2 0 HypF finger zf-HIT PF04438.11 gi|156938183|ref|YP_001435979.1| - 0.33 10.6 2.0 5.8 6.6 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger Elf1 PF05129.8 gi|156938183|ref|YP_001435979.1| - 0.51 10.0 7.0 1.4 8.6 0.0 2.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2 PF00096.21 gi|156938183|ref|YP_001435979.1| - 1.4 9.4 5.9 4.9 7.6 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Wbp11 PF09429.5 gi|156938183|ref|YP_001435979.1| - 5.2 7.1 8.7 0.17 11.8 0.9 1.9 2 0 0 2 2 2 0 WW domain binding protein 11 Filamin PF00630.14 gi|156938184|ref|YP_001435980.1| - 0.089 13.3 0.0 0.12 12.9 0.0 1.3 1 1 0 1 1 1 0 Filamin/ABP280 repeat FTP PF07504.8 gi|156938184|ref|YP_001435980.1| - 0.17 11.3 0.4 22 4.5 0.3 2.3 2 0 0 2 2 2 0 Fungalysin/Thermolysin Propeptide Motif LysE PF01810.13 gi|156938185|ref|YP_001435981.1| - 1.2e-09 37.7 21.4 2.6e-09 36.6 14.8 1.7 1 1 0 1 1 1 1 LysE type translocator Strabismus PF06638.6 gi|156938185|ref|YP_001435981.1| - 0.28 9.4 3.2 0.33 9.2 2.3 1.1 1 0 0 1 1 1 0 Strabismus protein PsbT PF01405.12 gi|156938185|ref|YP_001435981.1| - 1 9.0 6.9 2.7 7.6 0.0 2.9 2 0 0 2 2 2 0 Photosystem II reaction centre T protein CPSase_L_D2 PF02786.12 gi|156938186|ref|YP_001435982.1| - 4.6e-103 343.0 0.0 5.9e-71 238.1 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|156938186|ref|YP_001435982.1| - 8.7e-37 126.6 0.2 5.9e-18 65.2 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_chain PF00289.17 gi|156938186|ref|YP_001435982.1| - 5.7e-35 119.7 0.0 5.9e-18 64.9 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATPgrasp_Ter PF15632.1 gi|156938186|ref|YP_001435982.1| - 5.2e-29 101.0 0.0 2.6e-13 49.4 0.0 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|156938186|ref|YP_001435982.1| - 1.5e-20 73.2 0.2 9.8e-20 70.5 0.1 2.3 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|156938186|ref|YP_001435982.1| - 5.5e-19 68.1 0.1 1.1e-08 34.6 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|156938186|ref|YP_001435982.1| - 4.4e-17 62.1 0.2 3.5e-09 36.3 0.1 3.4 3 2 0 3 3 3 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|156938186|ref|YP_001435982.1| - 2.2e-14 53.6 0.2 3.4e-07 30.2 0.0 2.9 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|156938186|ref|YP_001435982.1| - 5.1e-14 52.2 0.3 5.3e-06 26.1 0.1 3.4 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|156938186|ref|YP_001435982.1| - 2.9e-11 43.2 0.0 5.1e-05 22.8 0.0 2.8 2 2 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|156938186|ref|YP_001435982.1| - 1.7e-05 24.1 0.1 0.0037 16.4 0.0 2.9 3 0 0 3 3 3 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|156938186|ref|YP_001435982.1| - 0.0016 17.8 0.0 0.23 10.8 0.0 2.9 2 1 0 2 2 2 1 ATP-grasp domain AP_endonuc_2 PF01261.19 gi|156938186|ref|YP_001435982.1| - 0.1 11.8 0.0 2.9 7.1 0.0 3.0 3 0 0 3 3 3 0 Xylose isomerase-like TIM barrel CPSase_sm_chain PF00988.17 gi|156938187|ref|YP_001435983.1| - 3.8e-49 165.5 0.0 7.9e-49 164.5 0.0 1.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|156938187|ref|YP_001435983.1| - 3e-37 127.9 0.0 4.4e-37 127.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|156938187|ref|YP_001435983.1| - 1e-11 44.7 0.1 1.2e-09 37.9 0.1 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|156938187|ref|YP_001435983.1| - 0.00053 19.4 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family Thiolase_N PF00108.18 gi|156938188|ref|YP_001435984.1| - 3.8e-85 285.0 0.0 4.7e-85 284.7 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|156938188|ref|YP_001435984.1| - 5.8e-39 132.3 0.0 1.6e-36 124.4 0.0 2.4 2 0 0 2 2 2 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|156938188|ref|YP_001435984.1| - 2.7e-07 30.3 1.1 0.0022 17.5 0.4 2.4 1 1 1 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|156938188|ref|YP_001435984.1| - 0.0049 16.4 0.1 0.19 11.3 0.0 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|156938188|ref|YP_001435984.1| - 0.035 13.9 1.6 5 7.0 0.0 2.9 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain zinc_ribbon_5 PF13719.1 gi|156938189|ref|YP_001435985.1| - 1.3e-06 27.9 4.0 8.8e-05 22.0 0.6 2.1 1 1 1 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|156938189|ref|YP_001435985.1| - 3e-06 26.8 4.2 0.02 14.6 0.2 2.3 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.1 gi|156938189|ref|YP_001435985.1| - 3.7e-06 26.5 1.0 0.025 14.2 0.0 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|156938189|ref|YP_001435985.1| - 4.4e-06 25.7 0.7 0.032 13.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|156938189|ref|YP_001435985.1| - 4.8e-06 25.8 2.0 0.046 13.2 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|156938189|ref|YP_001435985.1| - 0.00014 22.0 0.8 0.00018 21.7 0.5 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|156938189|ref|YP_001435985.1| - 0.00015 21.3 3.4 0.00043 19.9 2.3 1.8 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.14 gi|156938189|ref|YP_001435985.1| - 0.0002 20.8 3.5 0.022 14.2 0.1 2.1 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.1 gi|156938189|ref|YP_001435985.1| - 0.00036 19.6 0.5 0.00044 19.3 0.4 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger HypA PF01155.14 gi|156938189|ref|YP_001435985.1| - 0.00049 19.7 0.6 0.00053 19.6 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|156938189|ref|YP_001435985.1| - 0.00053 19.2 1.4 0.00076 18.7 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|156938189|ref|YP_001435985.1| - 0.00056 19.8 2.1 0.0014 18.5 1.5 1.6 1 1 0 1 1 1 1 Zinc ribbon domain UPF0547 PF10571.4 gi|156938189|ref|YP_001435985.1| - 0.0006 19.4 2.2 0.47 10.1 0.2 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|156938189|ref|YP_001435985.1| - 0.00072 19.2 0.5 0.0014 18.3 0.4 1.5 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|156938189|ref|YP_001435985.1| - 0.00072 19.3 0.4 0.0013 18.5 0.3 1.4 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|156938189|ref|YP_001435985.1| - 0.00082 19.0 0.6 0.43 10.2 0.0 2.5 2 1 1 3 3 3 1 Nudix N-terminal Zn_Tnp_IS1 PF03811.8 gi|156938189|ref|YP_001435985.1| - 0.0019 17.6 1.3 0.059 12.8 0.1 2.1 2 0 0 2 2 2 1 InsA N-terminal domain zf-NADH-PPase PF09297.6 gi|156938189|ref|YP_001435985.1| - 0.0025 17.2 1.4 0.77 9.3 0.2 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.1 gi|156938189|ref|YP_001435985.1| - 0.0028 17.6 0.3 0.87 9.6 0.0 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF329 PF03884.9 gi|156938189|ref|YP_001435985.1| - 0.0034 16.8 2.7 0.65 9.5 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF329) zf-CSL PF05207.8 gi|156938189|ref|YP_001435985.1| - 0.004 16.6 0.4 0.0065 15.9 0.3 1.4 1 0 0 1 1 1 1 CSL zinc finger zf-FPG_IleRS PF06827.9 gi|156938189|ref|YP_001435985.1| - 0.0051 16.4 0.3 1.3 8.6 0.0 2.3 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.6 gi|156938189|ref|YP_001435985.1| - 0.0058 16.2 0.2 0.01 15.5 0.1 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.1 gi|156938189|ref|YP_001435985.1| - 0.0073 16.1 2.1 0.067 13.0 1.5 2.1 1 1 0 1 1 1 1 Cysteine-rich CPXCG Ogr_Delta PF04606.7 gi|156938189|ref|YP_001435985.1| - 0.0086 15.7 1.0 0.72 9.5 0.0 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger TerY-C PF15616.1 gi|156938189|ref|YP_001435985.1| - 0.011 15.6 1.8 0.28 11.1 1.2 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain Rad50_zn_hook PF04423.9 gi|156938189|ref|YP_001435985.1| - 0.014 14.8 0.8 0.21 11.0 0.1 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc-ribbons_6 PF07191.7 gi|156938189|ref|YP_001435985.1| - 0.015 15.0 1.5 0.14 11.9 1.0 1.9 1 1 0 1 1 1 0 zinc-ribbons RRN7 PF11781.3 gi|156938189|ref|YP_001435985.1| - 0.02 14.4 2.8 0.32 10.5 0.1 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 RNHCP PF12647.2 gi|156938189|ref|YP_001435985.1| - 0.02 14.7 0.1 0.024 14.4 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain Desulfoferrod_N PF06397.7 gi|156938189|ref|YP_001435985.1| - 0.02 14.2 0.4 3.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF2387 PF09526.5 gi|156938189|ref|YP_001435985.1| - 0.03 14.2 2.7 0.048 13.5 1.9 1.4 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF983 PF06170.7 gi|156938189|ref|YP_001435985.1| - 0.03 14.4 0.2 4.3 7.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-HYPF PF07503.7 gi|156938189|ref|YP_001435985.1| - 0.034 13.5 0.8 6.2 6.3 0.0 2.1 2 0 0 2 2 2 0 HypF finger CpXC PF14353.1 gi|156938189|ref|YP_001435985.1| - 0.034 14.1 1.4 2.7 7.9 0.1 2.1 1 1 2 3 3 3 0 CpXC protein zf-Sec23_Sec24 PF04810.10 gi|156938189|ref|YP_001435985.1| - 0.034 13.7 0.0 3.4 7.2 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C3HC4_3 PF13920.1 gi|156938189|ref|YP_001435985.1| - 0.034 13.8 0.5 0.75 9.5 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_recom PF13408.1 gi|156938189|ref|YP_001435985.1| - 0.035 14.3 0.1 1.1 9.5 0.0 2.2 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-tcix PF14952.1 gi|156938189|ref|YP_001435985.1| - 0.036 13.4 3.4 2 7.7 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF3797 PF12677.2 gi|156938189|ref|YP_001435985.1| - 0.037 13.6 3.8 0.77 9.4 0.2 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) DNA_RNApol_7kD PF03604.8 gi|156938189|ref|YP_001435985.1| - 0.04 13.3 2.6 0.16 11.5 1.0 2.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF4428 PF14471.1 gi|156938189|ref|YP_001435985.1| - 0.06 13.1 0.7 0.076 12.7 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) YhfH PF14149.1 gi|156938189|ref|YP_001435985.1| - 0.063 13.0 2.4 4.9 7.0 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-LITAF-like PF10601.4 gi|156938189|ref|YP_001435985.1| - 0.07 12.9 0.5 2.9 7.8 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Spt4 PF06093.8 gi|156938189|ref|YP_001435985.1| - 0.074 12.9 0.4 1.6 8.6 0.0 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-IS66 PF13005.2 gi|156938189|ref|YP_001435985.1| - 0.084 12.8 5.6 0.84 9.6 0.4 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 RecR PF02132.10 gi|156938189|ref|YP_001435985.1| - 0.094 12.1 0.6 2.6 7.5 0.0 2.2 2 0 0 2 2 2 0 RecR protein PHD PF00628.24 gi|156938189|ref|YP_001435985.1| - 0.11 12.2 0.8 0.15 11.7 0.5 1.2 1 0 0 1 1 1 0 PHD-finger Ribosomal_S27e PF01667.12 gi|156938189|ref|YP_001435985.1| - 0.11 12.0 2.8 0.29 10.6 1.9 1.7 1 1 0 1 1 1 0 Ribosomal protein S27 zf-C2H2_4 PF13894.1 gi|156938189|ref|YP_001435985.1| - 0.11 12.8 0.4 14 6.2 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNA_POL_M_15KD PF02150.11 gi|156938189|ref|YP_001435985.1| - 0.12 12.1 0.5 0.38 10.4 0.4 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Elf1 PF05129.8 gi|156938189|ref|YP_001435985.1| - 0.13 12.0 0.5 0.25 11.0 0.3 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-dskA_traR PF01258.12 gi|156938189|ref|YP_001435985.1| - 0.13 12.0 3.8 0.98 9.2 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-Di19 PF05605.7 gi|156938189|ref|YP_001435985.1| - 0.13 12.3 2.0 5.3 7.2 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|156938189|ref|YP_001435985.1| - 0.14 12.4 0.9 11 6.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Mu-like_Com PF10122.4 gi|156938189|ref|YP_001435985.1| - 0.14 11.2 0.1 6.7 5.8 0.0 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com Cys_rich_KTR PF14205.1 gi|156938189|ref|YP_001435985.1| - 0.14 11.6 0.7 8 5.9 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR DUF164 PF02591.10 gi|156938189|ref|YP_001435985.1| - 0.15 11.9 1.9 0.81 9.5 1.4 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|156938189|ref|YP_001435985.1| - 0.17 12.0 3.8 3.8 7.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Prok-RING_4 PF14447.1 gi|156938189|ref|YP_001435985.1| - 0.19 11.3 1.0 3.9 7.0 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-nanos PF05741.8 gi|156938189|ref|YP_001435985.1| - 0.21 11.5 1.0 13 5.8 0.1 2.2 2 0 0 2 2 2 0 Nanos RNA binding domain Zn_Tnp_IS1595 PF12760.2 gi|156938189|ref|YP_001435985.1| - 0.23 11.2 3.6 2 8.2 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|156938189|ref|YP_001435985.1| - 0.44 10.1 2.8 6.4 6.3 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) PADR1 PF08063.7 gi|156938189|ref|YP_001435985.1| - 0.59 9.5 2.4 1.2 8.5 0.0 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain Rubredoxin PF00301.15 gi|156938189|ref|YP_001435985.1| - 1.2 9.0 8.7 3 7.8 0.3 2.6 1 1 2 3 3 3 0 Rubredoxin DUF1610 PF07754.6 gi|156938189|ref|YP_001435985.1| - 1.8 8.7 8.3 7.9 6.7 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RimK PF08443.6 gi|156938190|ref|YP_001435986.1| - 1.8e-48 164.5 0.0 2.9e-48 163.8 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|156938190|ref|YP_001435986.1| - 7.2e-14 51.3 0.0 1.5e-13 50.2 0.0 1.5 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|156938190|ref|YP_001435986.1| - 1.2e-10 41.4 0.0 2.1e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|156938190|ref|YP_001435986.1| - 2.5e-07 29.7 0.0 3.8e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|156938190|ref|YP_001435986.1| - 1.1e-05 25.4 0.1 2.9e-05 23.9 0.0 1.7 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|156938190|ref|YP_001435986.1| - 0.029 13.7 0.0 0.06 12.6 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain HIT PF01230.18 gi|156938191|ref|YP_001435987.1| - 5.7e-13 49.2 0.0 8.9e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|156938191|ref|YP_001435987.1| - 2.2e-08 33.7 0.0 3.8e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|156938191|ref|YP_001435987.1| - 1.7e-06 28.2 0.0 2.4e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding NHR2 PF08788.6 gi|156938191|ref|YP_001435987.1| - 0.079 12.4 0.2 0.19 11.2 0.0 1.7 2 0 0 2 2 2 0 NHR2 domain like Arc_PepC_II PF06847.6 gi|156938192|ref|YP_001435988.1| - 4.7e-23 81.4 0.1 7.4e-23 80.7 0.1 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|156938192|ref|YP_001435988.1| - 2.8e-11 43.4 12.5 2.8e-11 43.4 8.7 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family PAPS_reduct PF01507.14 gi|156938193|ref|YP_001435989.1| - 1.3e-14 54.4 0.0 1.9e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DFP PF04127.10 gi|156938193|ref|YP_001435989.1| - 0.0036 16.9 0.0 0.0071 15.9 0.0 1.4 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein ATP_bind_4 PF01902.12 gi|156938193|ref|YP_001435989.1| - 0.011 15.1 0.1 0.018 14.3 0.1 1.3 1 0 0 1 1 1 0 ATP-binding region tRNA_Me_trans PF03054.11 gi|156938193|ref|YP_001435989.1| - 0.022 13.2 0.2 0.033 12.7 0.1 1.2 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.8 gi|156938193|ref|YP_001435989.1| - 0.024 13.9 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|156938193|ref|YP_001435989.1| - 0.031 13.7 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Asn_synthase PF00733.16 gi|156938193|ref|YP_001435989.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase Ribosomal_S17 PF00366.15 gi|156938194|ref|YP_001435990.1| - 2.2e-21 75.6 1.1 2.8e-21 75.3 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.4 gi|156938194|ref|YP_001435990.1| - 0.0078 15.6 0.4 0.013 14.9 0.3 1.4 1 0 0 1 1 1 1 Putative zinc-finger domain Ribosomal_L14 PF00238.14 gi|156938195|ref|YP_001435991.1| - 1.1e-37 128.4 0.0 1.4e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|156938195|ref|YP_001435991.1| - 0.038 14.0 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 PAS fold FeoA PF04023.9 gi|156938195|ref|YP_001435991.1| - 0.16 11.9 2.5 3.6 7.6 0.4 2.3 1 1 1 2 2 2 0 FeoA domain KOW PF00467.24 gi|156938196|ref|YP_001435992.1| - 2.2e-09 36.6 3.4 2.2e-09 36.6 2.3 1.7 2 0 0 2 2 2 1 KOW motif GntR PF00392.16 gi|156938196|ref|YP_001435992.1| - 0.091 12.2 0.1 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Ribosomal_S4e PF00900.15 gi|156938197|ref|YP_001435993.1| - 3.4e-29 100.3 0.1 6.7e-29 99.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|156938197|ref|YP_001435993.1| - 1.5e-19 69.5 5.0 2.7e-19 68.7 3.5 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|156938197|ref|YP_001435993.1| - 1.2e-13 50.2 1.4 2.7e-13 49.0 0.1 2.1 2 0 0 2 2 2 1 S4 domain S4_2 PF13275.1 gi|156938197|ref|YP_001435993.1| - 0.018 14.5 0.4 0.056 13.0 0.0 2.0 2 0 0 2 2 2 0 S4 domain KOW PF00467.24 gi|156938197|ref|YP_001435993.1| - 0.23 11.2 4.9 0.11 12.2 1.2 2.1 2 0 0 2 2 2 0 KOW motif Ribosomal_L5_C PF00673.16 gi|156938198|ref|YP_001435994.1| - 1.5e-24 85.5 0.0 6.1e-24 83.5 0.0 1.9 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|156938198|ref|YP_001435994.1| - 2e-19 69.1 0.3 4.5e-19 67.9 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|156938199|ref|YP_001435995.1| - 2.6e-18 65.1 6.2 2.7e-18 65.0 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Zn_Tnp_IS1595 PF12760.2 gi|156938199|ref|YP_001435995.1| - 0.0039 16.9 3.9 0.0048 16.6 2.7 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|156938199|ref|YP_001435995.1| - 0.0067 15.8 0.7 0.009 15.4 0.5 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain DZR PF12773.2 gi|156938199|ref|YP_001435995.1| - 0.02 14.7 1.2 0.032 14.0 0.9 1.3 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|156938199|ref|YP_001435995.1| - 0.031 14.1 0.4 0.04 13.7 0.3 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF2039 PF10217.4 gi|156938199|ref|YP_001435995.1| - 0.23 11.5 1.3 0.33 11.0 0.9 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-HYPF PF07503.7 gi|156938199|ref|YP_001435995.1| - 0.3 10.5 2.4 3.1 7.2 0.4 2.2 2 0 0 2 2 2 0 HypF finger zf-CCHC_3 PF13917.1 gi|156938199|ref|YP_001435995.1| - 0.36 10.5 0.5 0.36 10.5 0.4 2.0 2 0 0 2 2 2 0 Zinc knuckle Ribosomal_S8 PF00410.14 gi|156938200|ref|YP_001435996.1| - 1.2e-26 93.0 0.1 1.6e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 CBS PF00571.23 gi|156938201|ref|YP_001435997.1| - 1.3e-35 120.9 1.2 2.5e-19 68.7 0.1 2.0 2 0 0 2 2 2 2 CBS domain GAF_2 PF13185.1 gi|156938201|ref|YP_001435997.1| - 0.05 14.0 0.0 0.082 13.3 0.0 1.4 1 1 0 1 1 1 0 GAF domain RibD_C PF01872.12 gi|156938201|ref|YP_001435997.1| - 0.099 12.2 0.1 0.39 10.2 0.0 1.8 1 1 1 2 2 2 0 RibD C-terminal domain FbpA PF05833.6 gi|156938202|ref|YP_001435998.1| - 1.8e-50 171.8 10.1 2.8e-50 171.2 7.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|156938202|ref|YP_001435998.1| - 8.8e-27 92.8 0.0 1.9e-26 91.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|156938202|ref|YP_001435998.1| - 9.9e-05 22.0 0.0 0.00037 20.2 0.0 2.1 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain DUF3441 PF11923.3 gi|156938202|ref|YP_001435998.1| - 0.0075 15.8 0.8 0.028 13.9 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF3441) Ribosomal_S13 PF00416.17 gi|156938202|ref|YP_001435998.1| - 0.021 15.2 1.1 0.19 12.1 0.0 2.9 2 1 0 2 2 2 0 Ribosomal protein S13/S18 IncA PF04156.9 gi|156938202|ref|YP_001435998.1| - 0.15 11.6 16.6 0.44 10.1 4.1 2.4 2 0 0 2 2 2 0 IncA protein FliD_C PF07195.7 gi|156938202|ref|YP_001435998.1| - 0.21 10.8 7.6 0.56 9.4 5.2 1.7 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF648 PF04890.8 gi|156938202|ref|YP_001435998.1| - 0.3 10.2 5.0 0.59 9.2 3.4 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF648) Exonuc_VII_L PF02601.10 gi|156938202|ref|YP_001435998.1| - 0.37 9.9 5.1 0.76 8.9 3.5 1.5 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF445 PF04286.7 gi|156938202|ref|YP_001435998.1| - 1.7 8.0 11.0 0.72 9.3 5.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF445) CorA PF01544.13 gi|156938202|ref|YP_001435998.1| - 2.4 7.1 7.6 4.8 6.1 2.0 2.2 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein ATP-grasp PF02222.17 gi|156938203|ref|YP_001435999.1| - 9e-45 152.1 0.0 1.5e-44 151.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|156938203|ref|YP_001435999.1| - 8.6e-22 77.7 1.0 2.1e-21 76.4 0.1 2.0 2 1 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|156938203|ref|YP_001435999.1| - 3.4e-13 49.4 0.0 9.9e-13 47.9 0.0 1.8 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|156938203|ref|YP_001435999.1| - 4.5e-13 48.9 0.0 1e-12 47.7 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|156938203|ref|YP_001435999.1| - 4.7e-08 32.1 0.0 1.6e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|156938203|ref|YP_001435999.1| - 4.9e-07 29.3 0.0 0.0004 19.9 0.0 2.3 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|156938203|ref|YP_001435999.1| - 6e-07 29.4 0.0 1.1e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|156938203|ref|YP_001435999.1| - 2e-06 27.5 0.0 2.5e-05 23.9 0.0 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_chain PF00289.17 gi|156938203|ref|YP_001435999.1| - 4.3e-05 23.5 0.0 8.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|156938203|ref|YP_001435999.1| - 0.0014 17.7 0.0 0.0025 16.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.1 gi|156938203|ref|YP_001435999.1| - 0.0023 17.2 0.1 0.017 14.3 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.1 gi|156938203|ref|YP_001435999.1| - 0.0068 15.5 0.0 0.16 11.0 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp RmlD_sub_bind PF04321.12 gi|156938203|ref|YP_001435999.1| - 0.012 14.5 0.1 0.019 13.8 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|156938203|ref|YP_001435999.1| - 0.013 14.9 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.22 gi|156938203|ref|YP_001435999.1| - 0.036 14.4 0.0 1.5 9.2 0.0 2.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|156938203|ref|YP_001435999.1| - 0.044 13.8 0.0 0.093 12.8 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|156938203|ref|YP_001435999.1| - 0.076 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding Fibrillarin PF01269.12 gi|156938204|ref|YP_001436000.1| - 2.1e-100 334.3 0.0 2.4e-100 334.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|156938204|ref|YP_001436000.1| - 0.0013 18.3 0.0 0.0022 17.5 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|156938204|ref|YP_001436000.1| - 0.044 13.8 0.0 0.59 10.1 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain GCD14 PF08704.5 gi|156938204|ref|YP_001436000.1| - 0.11 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Radical_SAM PF04055.16 gi|156938206|ref|YP_001436002.1| - 1e-26 94.1 0.0 3.7e-26 92.2 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|156938206|ref|YP_001436002.1| - 1e-17 63.7 0.2 1.8e-17 62.9 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|156938206|ref|YP_001436002.1| - 3.1e-05 23.6 0.1 7.3e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 TRAM domain Thy1 PF02511.10 gi|156938209|ref|YP_001436005.1| - 2.4e-42 144.4 0.1 3.4e-42 143.9 0.0 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DegS PF05384.6 gi|156938209|ref|YP_001436005.1| - 0.087 12.0 0.7 0.26 10.4 0.5 1.9 1 1 0 1 1 1 0 Sensor protein DegS zf-C3HC4_3 PF13920.1 gi|156938210|ref|YP_001436006.1| - 0.0015 18.1 1.6 0.03 13.9 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|156938210|ref|YP_001436006.1| - 0.037 13.6 8.6 0.18 11.4 0.4 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-C3HC4_2 PF13923.1 gi|156938210|ref|YP_001436006.1| - 0.063 13.3 3.4 0.27 11.3 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-TFIIB PF13453.1 gi|156938210|ref|YP_001436006.1| - 0.21 10.8 2.5 7.1 5.9 0.3 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-RING_2 PF13639.1 gi|156938210|ref|YP_001436006.1| - 0.25 11.2 4.3 0.51 10.2 3.0 1.6 1 1 0 1 1 1 0 Ring finger domain Lar_restr_allev PF14354.1 gi|156938210|ref|YP_001436006.1| - 0.26 11.6 2.2 0.41 10.9 1.5 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-UBR PF02207.15 gi|156938210|ref|YP_001436006.1| - 0.33 10.6 3.4 0.13 11.9 0.9 1.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) ADK_lid PF05191.9 gi|156938210|ref|YP_001436006.1| - 1.7 8.3 4.8 2.9 7.6 3.3 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid DUF2296 PF10058.4 gi|156938210|ref|YP_001436006.1| - 1.9 8.3 6.7 3.3 7.5 3.5 2.0 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) FANCL_C PF11793.3 gi|156938210|ref|YP_001436006.1| - 2.1 8.3 6.7 0.95 9.4 0.4 2.2 1 1 1 2 2 2 0 FANCL C-terminal domain Tnp_zf-ribbon_2 PF13842.1 gi|156938210|ref|YP_001436006.1| - 3.8 7.9 9.7 2 8.8 4.1 2.0 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C2H2 PF00096.21 gi|156938210|ref|YP_001436006.1| - 7.4 7.1 7.3 9.5 6.7 1.1 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-B_box PF00643.19 gi|156938210|ref|YP_001436006.1| - 8.4 6.3 6.4 60 3.6 3.8 2.5 2 1 0 2 2 2 0 B-box zinc finger RNase_P_Rpp14 PF01900.14 gi|156938212|ref|YP_001436008.1| - 3e-15 56.0 0.0 4.9e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family Fis1_TPR_N PF14852.1 gi|156938212|ref|YP_001436008.1| - 0.091 12.0 0.0 0.59 9.4 0.0 2.1 2 0 0 2 2 2 0 Fis1 N-terminal tetratricopeptide repeat HTH_34 PF13601.1 gi|156938213|ref|YP_001436009.1| - 2e-15 56.5 0.0 2.4e-15 56.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|156938213|ref|YP_001436009.1| - 8.3e-09 34.9 0.0 1.5e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|156938213|ref|YP_001436009.1| - 2.8e-08 33.0 0.0 4.7e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|156938213|ref|YP_001436009.1| - 1.6e-05 24.6 0.0 2.5e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|156938213|ref|YP_001436009.1| - 2.6e-05 23.9 0.0 4.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|156938213|ref|YP_001436009.1| - 3.5e-05 23.4 0.0 7.2e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|156938213|ref|YP_001436009.1| - 0.00083 18.9 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|156938213|ref|YP_001436009.1| - 0.0021 17.6 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|156938213|ref|YP_001436009.1| - 0.004 16.8 0.1 0.0066 16.1 0.0 1.4 2 0 0 2 2 2 1 MarR family FaeA PF04703.7 gi|156938213|ref|YP_001436009.1| - 0.0087 16.1 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.11 gi|156938213|ref|YP_001436009.1| - 0.009 15.5 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain TFIIE_alpha PF02002.12 gi|156938213|ref|YP_001436009.1| - 0.014 14.8 0.0 0.026 14.0 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|156938213|ref|YP_001436009.1| - 0.02 14.7 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.6 gi|156938213|ref|YP_001436009.1| - 0.035 13.8 0.0 0.067 12.9 0.0 1.7 2 1 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.7 gi|156938213|ref|YP_001436009.1| - 0.035 13.6 0.1 0.93 9.0 0.0 2.3 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|156938213|ref|YP_001436009.1| - 0.044 13.9 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.1 gi|156938213|ref|YP_001436009.1| - 0.091 12.5 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix DUF3165 PF11364.3 gi|156938215|ref|YP_001436011.1| - 4.3 7.5 11.9 3.6 7.7 2.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3165) HEPN PF05168.9 gi|156938216|ref|YP_001436012.1| - 0.00033 20.5 0.1 0.0054 16.5 0.0 2.0 2 0 0 2 2 2 2 HEPN domain Lyase_1 PF00206.15 gi|156938217|ref|YP_001436013.1| - 2.4e-40 138.6 0.0 5.5e-40 137.4 0.0 1.6 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|156938217|ref|YP_001436013.1| - 1.3e-07 31.5 0.2 4.3e-07 29.8 0.1 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Peptidase_M41 PF01434.13 gi|156938217|ref|YP_001436013.1| - 0.12 11.7 0.0 0.29 10.5 0.0 1.6 1 0 0 1 1 1 0 Peptidase family M41 AAA PF00004.24 gi|156938218|ref|YP_001436014.1| - 4.3e-101 334.3 0.0 2.2e-51 173.4 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|156938218|ref|YP_001436014.1| - 6.2e-30 102.9 0.5 3.6e-29 100.5 0.8 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|156938218|ref|YP_001436014.1| - 3.7e-16 59.5 0.0 1.4e-07 31.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|156938218|ref|YP_001436014.1| - 1.1e-15 57.3 0.1 2.2e-08 33.4 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|156938218|ref|YP_001436014.1| - 2.5e-15 56.9 0.0 2.7e-07 30.7 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|156938218|ref|YP_001436014.1| - 5.2e-14 51.6 0.5 5.2e-14 51.6 0.4 2.8 2 1 1 3 3 2 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|156938218|ref|YP_001436014.1| - 8.6e-14 51.4 1.3 6.9e-06 25.8 0.1 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|156938218|ref|YP_001436014.1| - 1.5e-13 51.0 0.4 1e-05 25.6 0.0 4.1 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|156938218|ref|YP_001436014.1| - 1.6e-12 47.4 0.0 2.6e-06 27.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|156938218|ref|YP_001436014.1| - 2.6e-12 46.7 0.0 7.4e-06 25.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|156938218|ref|YP_001436014.1| - 7.3e-12 46.1 0.1 4.4e-06 27.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|156938218|ref|YP_001436014.1| - 3.3e-11 42.5 0.0 5.9e-05 21.9 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|156938218|ref|YP_001436014.1| - 2.3e-10 39.9 0.0 7.1e-05 21.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Vps4_C PF09336.5 gi|156938218|ref|YP_001436014.1| - 8.1e-10 38.4 0.4 7e-06 25.8 0.0 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.1 gi|156938218|ref|YP_001436014.1| - 1.6e-09 38.1 0.1 0.00079 19.7 0.0 3.2 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|156938218|ref|YP_001436014.1| - 3.7e-09 36.2 0.3 0.0024 17.3 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|156938218|ref|YP_001436014.1| - 4.1e-08 32.8 0.8 0.014 15.1 0.0 3.2 2 0 0 2 2 2 2 Part of AAA domain Mg_chelatase PF01078.16 gi|156938218|ref|YP_001436014.1| - 5.2e-08 32.2 0.9 0.0031 16.6 0.1 2.9 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|156938218|ref|YP_001436014.1| - 7.9e-08 32.4 0.0 0.00088 19.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|156938218|ref|YP_001436014.1| - 2.3e-07 30.9 0.0 0.0047 17.0 0.0 2.8 2 0 0 2 2 2 2 RNA helicase Arch_ATPase PF01637.13 gi|156938218|ref|YP_001436014.1| - 2.7e-07 30.5 2.1 0.0046 16.6 0.0 4.6 4 2 0 4 4 3 1 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|156938218|ref|YP_001436014.1| - 7.9e-07 29.2 0.0 0.064 13.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|156938218|ref|YP_001436014.1| - 8.2e-07 28.8 0.1 0.011 15.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|156938218|ref|YP_001436014.1| - 9.1e-07 28.4 0.2 0.21 11.0 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|156938218|ref|YP_001436014.1| - 2.3e-06 26.7 0.0 0.021 13.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|156938218|ref|YP_001436014.1| - 2.3e-06 27.1 10.8 0.025 13.9 0.1 4.7 2 2 1 4 4 4 2 AAA domain NACHT PF05729.7 gi|156938218|ref|YP_001436014.1| - 6.1e-06 25.9 0.7 0.027 14.1 0.0 3.9 3 1 1 4 4 4 1 NACHT domain ABC_tran PF00005.22 gi|156938218|ref|YP_001436014.1| - 9.1e-06 26.0 0.0 0.22 11.8 0.0 2.5 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|156938218|ref|YP_001436014.1| - 1.6e-05 24.2 0.7 0.068 12.3 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|156938218|ref|YP_001436014.1| - 1.8e-05 24.3 0.0 0.07 12.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.13 gi|156938218|ref|YP_001436014.1| - 3.9e-05 23.3 0.0 0.019 14.6 0.0 3.3 3 1 0 3 3 3 1 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|156938218|ref|YP_001436014.1| - 6.6e-05 21.9 0.2 0.02 13.7 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|156938218|ref|YP_001436014.1| - 9.2e-05 21.6 4.7 0.37 9.8 0.0 4.1 3 2 2 5 5 5 2 KaiC ATP-synt_ab PF00006.20 gi|156938218|ref|YP_001436014.1| - 0.00027 20.5 0.0 0.52 9.7 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain DUF2075 PF09848.4 gi|156938218|ref|YP_001436014.1| - 0.00028 19.9 0.0 0.12 11.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UPF0079 PF02367.12 gi|156938218|ref|YP_001436014.1| - 0.00053 19.6 0.0 0.13 11.8 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_11 PF13086.1 gi|156938218|ref|YP_001436014.1| - 0.0006 19.4 0.0 0.68 9.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|156938218|ref|YP_001436014.1| - 0.00073 19.2 1.3 8.7 6.0 0.0 4.1 2 2 2 4 4 3 0 NTPase ResIII PF04851.10 gi|156938218|ref|YP_001436014.1| - 0.001 18.9 0.0 0.93 9.2 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SKI PF01202.17 gi|156938218|ref|YP_001436014.1| - 0.0014 18.4 0.0 0.62 9.9 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase T2SE PF00437.15 gi|156938218|ref|YP_001436014.1| - 0.0016 17.4 0.0 1 8.2 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein Molydop_binding PF01568.16 gi|156938218|ref|YP_001436014.1| - 0.0028 17.4 0.1 0.012 15.4 0.0 2.0 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain AAA_30 PF13604.1 gi|156938218|ref|YP_001436014.1| - 0.0032 17.0 0.1 2.1 7.8 0.0 2.7 3 0 0 3 3 2 1 AAA domain NB-ARC PF00931.17 gi|156938218|ref|YP_001436014.1| - 0.0036 16.2 0.0 1 8.1 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AFG1_ATPase PF03969.11 gi|156938218|ref|YP_001436014.1| - 0.0072 15.1 0.0 1.7 7.3 0.0 2.7 3 0 0 3 3 2 1 AFG1-like ATPase Guanylate_kin PF00625.16 gi|156938218|ref|YP_001436014.1| - 0.0081 15.6 0.4 5.1 6.4 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase KTI12 PF08433.5 gi|156938218|ref|YP_001436014.1| - 0.013 14.7 0.0 1.7 7.7 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|156938218|ref|YP_001436014.1| - 0.015 14.8 0.0 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|156938218|ref|YP_001436014.1| - 0.026 13.9 3.2 3 7.2 0.4 3.6 3 1 0 3 3 3 0 AAA-like domain KAP_NTPase PF07693.9 gi|156938218|ref|YP_001436014.1| - 0.049 12.6 0.0 19 4.1 0.0 3.1 2 1 1 3 3 3 0 KAP family P-loop domain IPT PF01745.11 gi|156938218|ref|YP_001436014.1| - 0.052 12.7 0.2 1.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase AAA_23 PF13476.1 gi|156938218|ref|YP_001436014.1| - 0.057 13.7 0.1 3 8.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain eIF-1a PF01176.14 gi|156938218|ref|YP_001436014.1| - 0.057 12.8 1.2 3.7 7.0 0.1 2.6 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 PduV-EutP PF10662.4 gi|156938218|ref|YP_001436014.1| - 0.075 12.5 0.0 5.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|156938218|ref|YP_001436014.1| - 0.078 12.4 0.5 15 4.9 0.0 2.9 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|156938218|ref|YP_001436014.1| - 0.086 12.3 0.0 14 5.2 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain MobB PF03205.9 gi|156938218|ref|YP_001436014.1| - 0.11 12.2 0.1 26 4.5 0.0 3.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B Lipase_GDSL_2 PF13472.1 gi|156938218|ref|YP_001436014.1| - 0.28 11.2 0.4 18 5.3 0.0 3.2 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family AAA_21 PF13304.1 gi|156938218|ref|YP_001436014.1| - 2.8 7.8 3.6 27 4.6 0.0 3.2 2 2 2 4 4 3 0 AAA domain Wyosine_form PF08608.7 gi|156938220|ref|YP_001436016.1| - 1.5e-24 85.8 0.0 3.1e-24 84.8 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|156938220|ref|YP_001436016.1| - 9.2e-20 71.4 0.0 3.2e-19 69.7 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Regulator_TrmB PF11495.3 gi|156938220|ref|YP_001436016.1| - 0.16 10.9 0.0 8.4 5.2 0.0 2.1 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB PQQ_3 PF13570.1 gi|156938221|ref|YP_001436017.1| - 0.016 15.4 1.5 1.6 9.1 0.0 3.9 4 1 1 5 5 5 0 PQQ-like domain CPSF_A PF03178.10 gi|156938221|ref|YP_001436017.1| - 0.049 12.7 0.0 1.5 7.8 0.0 2.5 1 1 1 2 2 2 0 CPSF A subunit region tRNA-synt_2 PF00152.15 gi|156938222|ref|YP_001436018.1| - 1.6e-82 276.9 0.0 2e-82 276.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|156938222|ref|YP_001436018.1| - 8.8e-17 60.7 0.3 1.6e-16 59.9 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|156938222|ref|YP_001436018.1| - 0.046 12.8 0.1 10 5.2 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) DAHP_synth_1 PF00793.15 gi|156938223|ref|YP_001436019.1| - 5.4e-79 264.6 0.0 6.7e-79 264.3 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|156938223|ref|YP_001436019.1| - 2.3e-09 36.7 0.0 4.3e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 NeuB family PDZ_2 PF13180.1 gi|156938223|ref|YP_001436019.1| - 0.087 12.7 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 PDZ domain IRK_N PF08466.5 gi|156938223|ref|YP_001436019.1| - 0.094 12.6 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 Inward rectifier potassium channel N-terminal RNase_HII PF01351.13 gi|156938224|ref|YP_001436020.1| - 3.6e-42 144.2 0.1 4.1e-42 144.0 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII zf-HC2 PF13490.1 gi|156938225|ref|YP_001436021.1| - 0.08 12.9 0.1 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative zinc-finger MobB PF03205.9 gi|156938226|ref|YP_001436022.1| - 3.1e-15 56.1 0.1 3.5e-15 55.9 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|156938226|ref|YP_001436022.1| - 7e-05 22.7 0.0 9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|156938226|ref|YP_001436022.1| - 0.00014 21.6 0.1 0.00014 21.6 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|156938226|ref|YP_001436022.1| - 0.0032 17.4 0.0 0.0036 17.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Miro PF08477.8 gi|156938226|ref|YP_001436022.1| - 0.0073 16.7 0.0 0.011 16.2 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein NTPase_1 PF03266.10 gi|156938226|ref|YP_001436022.1| - 0.01 15.5 0.1 0.013 15.2 0.1 1.3 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|156938226|ref|YP_001436022.1| - 0.012 16.4 0.2 0.033 15.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|156938226|ref|YP_001436022.1| - 0.013 14.4 0.2 0.018 14.0 0.1 1.1 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.1 gi|156938226|ref|YP_001436022.1| - 0.02 15.0 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|156938226|ref|YP_001436022.1| - 0.022 14.7 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_35 PF14516.1 gi|156938226|ref|YP_001436022.1| - 0.023 13.3 0.6 0.031 12.9 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain SRPRB PF09439.5 gi|156938226|ref|YP_001436022.1| - 0.024 13.8 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RNA_helicase PF00910.17 gi|156938226|ref|YP_001436022.1| - 0.038 14.1 0.0 0.058 13.5 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|156938226|ref|YP_001436022.1| - 0.04 13.7 0.0 0.057 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|156938226|ref|YP_001436022.1| - 0.043 13.2 0.1 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|156938226|ref|YP_001436022.1| - 0.05 13.9 0.4 0.064 13.5 0.3 1.3 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|156938226|ref|YP_001436022.1| - 0.057 12.9 0.2 0.33 10.4 0.1 2.1 1 1 1 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RecA PF00154.16 gi|156938226|ref|YP_001436022.1| - 0.079 12.0 0.0 0.099 11.6 0.0 1.1 1 0 0 1 1 1 0 recA bacterial DNA recombination protein NACHT PF05729.7 gi|156938226|ref|YP_001436022.1| - 0.084 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|156938226|ref|YP_001436022.1| - 0.099 12.5 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|156938226|ref|YP_001436022.1| - 0.11 11.9 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|156938226|ref|YP_001436022.1| - 0.16 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF457 PF04307.9 gi|156938227|ref|YP_001436023.1| - 3.6e-18 65.4 8.4 4.9e-18 64.9 5.8 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4184 PF13803.1 gi|156938227|ref|YP_001436023.1| - 0.00078 18.8 0.5 0.016 14.5 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4184) Zn_dep_PLPC PF00882.13 gi|156938227|ref|YP_001436023.1| - 0.0034 17.0 0.1 0.0081 15.8 0.0 1.5 1 1 0 1 1 1 1 Zinc dependent phospholipase C GHMP_kinases_N PF00288.21 gi|156938228|ref|YP_001436024.1| - 6.1e-06 26.2 0.2 1.3e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|156938228|ref|YP_001436024.1| - 6.8e-05 22.9 0.0 0.00068 19.7 0.0 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal Glycos_transf_3 PF00591.16 gi|156938229|ref|YP_001436025.1| - 4.1e-74 249.1 0.0 5.5e-74 248.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|156938229|ref|YP_001436025.1| - 6.1e-18 64.1 0.0 1.6e-17 62.7 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain