#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
ABC2_membrane_4	PF12730.2	gi|124026907|ref|YP_001012227.1|	-	1.3e-10	40.9	28.6	1.3e-10	40.9	19.8	2.1	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|124026907|ref|YP_001012227.1|	-	1.7e-09	36.9	33.3	3.1e-09	36.0	23.1	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|124026907|ref|YP_001012227.1|	-	1.5e-05	24.2	24.0	1.5e-05	24.2	16.6	2.3	2	1	1	3	3	3	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.1	gi|124026907|ref|YP_001012227.1|	-	2.5	7.3	26.9	0.082	12.1	12.6	2.2	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
Elf1	PF05129.8	gi|124026908|ref|YP_001012228.1|	-	6.3e-24	83.4	0.0	7.9e-24	83.1	0.0	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.1	gi|124026908|ref|YP_001012228.1|	-	1.8e-05	24.9	0.2	3.4e-05	24.0	0.1	1.5	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-CSL	PF05207.8	gi|124026908|ref|YP_001012228.1|	-	0.004	16.6	1.4	0.0048	16.3	0.1	1.7	2	0	0	2	2	2	1	CSL	zinc	finger
DUF4109	PF13397.1	gi|124026908|ref|YP_001012228.1|	-	0.01	16.2	0.0	0.077	13.3	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4109)
zf-ribbon_3	PF13248.1	gi|124026908|ref|YP_001012228.1|	-	0.055	12.7	1.3	0.28	10.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Cys_rich_CPXG	PF14255.1	gi|124026908|ref|YP_001012228.1|	-	0.062	13.1	0.2	0.12	12.2	0.1	1.5	1	0	0	1	1	1	0	Cysteine-rich	CPXCG
zf-ISL3	PF14690.1	gi|124026908|ref|YP_001012228.1|	-	0.087	12.8	0.9	0.3	11.1	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_4	PF13717.1	gi|124026908|ref|YP_001012228.1|	-	0.17	11.5	2.1	4.8	6.9	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124026908|ref|YP_001012228.1|	-	0.18	11.4	2.4	4.1	7.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|124026908|ref|YP_001012228.1|	-	0.22	11.3	2.7	0.54	10.1	1.7	1.8	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Ogr_Delta	PF04606.7	gi|124026908|ref|YP_001012228.1|	-	0.29	10.8	3.2	0.58	9.8	2.2	1.6	1	1	0	1	1	1	0	Ogr/Delta-like	zinc	finger
zf-LITAF-like	PF10601.4	gi|124026908|ref|YP_001012228.1|	-	0.38	10.6	1.9	0.39	10.5	0.1	1.7	1	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124026908|ref|YP_001012228.1|	-	1.8	8.1	6.1	0.4	10.2	0.9	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|124026908|ref|YP_001012228.1|	-	5	7.4	9.2	1.2	9.3	2.7	2.5	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
PcrB	PF01884.12	gi|124026909|ref|YP_001012229.1|	-	8.4e-59	198.6	0.0	1e-58	198.3	0.0	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.16	gi|124026909|ref|YP_001012229.1|	-	4.9e-06	25.9	0.0	1.3e-05	24.6	0.0	1.6	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
Trp_syntA	PF00290.15	gi|124026909|ref|YP_001012229.1|	-	0.0002	20.0	0.1	0.095	11.2	0.0	2.7	2	1	1	3	3	3	2	Tryptophan	synthase	alpha	chain
BtpA	PF03437.10	gi|124026909|ref|YP_001012229.1|	-	0.068	12.4	0.0	0.17	11.1	0.0	1.5	2	0	0	2	2	2	0	BtpA	family
DHO_dh	PF01180.16	gi|124026909|ref|YP_001012229.1|	-	0.15	11.0	0.0	0.21	10.4	0.0	1.2	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
DUF1459	PF07312.6	gi|124026909|ref|YP_001012229.1|	-	5.1	7.0	5.9	0.62	10.0	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1459)
MazG	PF03819.12	gi|124026910|ref|YP_001012230.1|	-	3.3e-12	46.1	0.2	4.6e-12	45.7	0.1	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
PRA-PH	PF01503.12	gi|124026910|ref|YP_001012230.1|	-	1.1e-05	25.5	0.3	1.4e-05	25.2	0.2	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG-like	PF12643.2	gi|124026910|ref|YP_001012230.1|	-	0.014	15.3	0.0	0.019	14.9	0.0	1.1	1	0	0	1	1	1	0	MazG-like	family
Sec61_beta	PF03911.11	gi|124026911|ref|YP_001012231.1|	-	9.6e-09	34.8	0.8	1.2e-08	34.5	0.6	1.2	1	0	0	1	1	1	1	Sec61beta	family
DUF1743	PF08489.6	gi|124026912|ref|YP_001012232.1|	-	6.7e-37	125.8	0.0	1.8e-36	124.4	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
AsnC_trans_reg	PF01037.16	gi|124026913|ref|YP_001012233.1|	-	1e-13	50.7	0.6	1.1e-13	50.6	0.4	1.0	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|124026913|ref|YP_001012233.1|	-	0.00013	21.6	0.0	0.00014	21.4	0.0	1.2	1	0	0	1	1	1	1	GYD	domain
NTP_transf_4	PF13562.1	gi|124026913|ref|YP_001012233.1|	-	0.13	11.9	0.0	0.14	11.8	0.0	1.0	1	0	0	1	1	1	0	Sugar	nucleotidyl	transferase
DUF367	PF04034.8	gi|124026914|ref|YP_001012234.1|	-	1.7e-41	140.7	0.0	2.3e-41	140.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF367)
LacI	PF00356.16	gi|124026915|ref|YP_001012235.1|	-	5.6e-06	25.8	0.4	4.1e-05	23.1	0.3	2.1	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	lacI	family
HTH_3	PF01381.17	gi|124026915|ref|YP_001012235.1|	-	2.2e-05	24.1	0.0	4.5e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_26	PF13443.1	gi|124026915|ref|YP_001012235.1|	-	0.00025	21.1	0.0	0.0048	17.0	0.0	2.5	2	1	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_31	PF13560.1	gi|124026915|ref|YP_001012235.1|	-	0.00053	20.1	0.3	0.0011	19.1	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|124026915|ref|YP_001012235.1|	-	0.0011	18.8	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	Transposase
GerE	PF00196.14	gi|124026915|ref|YP_001012235.1|	-	0.0058	15.9	0.0	0.011	15.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.7	gi|124026915|ref|YP_001012235.1|	-	0.012	15.1	2.1	0.034	13.6	0.2	2.5	2	2	0	2	2	2	0	Sigma-70,	region	4
Sigma70_ECF	PF07638.6	gi|124026915|ref|YP_001012235.1|	-	0.024	14.3	0.0	0.044	13.4	0.0	1.4	1	0	0	1	1	1	0	ECF	sigma	factor
DUF3071	PF11268.3	gi|124026915|ref|YP_001012235.1|	-	0.026	14.2	0.1	0.042	13.5	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
HTH_29	PF13551.1	gi|124026915|ref|YP_001012235.1|	-	0.028	14.5	0.1	2.4	8.3	0.0	2.2	1	1	1	2	2	2	0	Winged	helix-turn	helix
MarR_2	PF12802.2	gi|124026915|ref|YP_001012235.1|	-	0.028	14.0	0.2	0.25	11.0	0.0	2.5	2	1	1	3	3	3	0	MarR	family
HTH_23	PF13384.1	gi|124026915|ref|YP_001012235.1|	-	0.045	13.4	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
Ub-Mut7C	PF14451.1	gi|124026915|ref|YP_001012235.1|	-	0.047	13.2	0.1	0.098	12.1	0.0	1.5	2	0	0	2	2	2	0	Mut7-C	ubiquitin
HTH_7	PF02796.10	gi|124026915|ref|YP_001012235.1|	-	0.06	13.2	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_17	PF12728.2	gi|124026915|ref|YP_001012235.1|	-	0.13	12.5	0.0	0.45	10.8	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|124026915|ref|YP_001012235.1|	-	0.15	11.9	0.2	2.6	8.0	0.1	2.5	2	1	1	3	3	3	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
tRNA_NucTransf2	PF09249.6	gi|124026917|ref|YP_001012237.1|	-	4.1e-44	149.0	0.0	9.6e-44	147.9	0.0	1.6	2	0	0	2	2	2	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|124026917|ref|YP_001012237.1|	-	2.9e-08	33.9	0.1	6.2e-08	32.8	0.1	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.1	gi|124026917|ref|YP_001012237.1|	-	0.067	13.2	0.0	0.15	12.1	0.0	1.5	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
CsoSCA	PF08936.5	gi|124026917|ref|YP_001012237.1|	-	0.09	11.1	0.0	0.17	10.1	0.0	1.4	1	0	0	1	1	1	0	Carboxysome	Shell	Carbonic	Anhydrase
DUF1188	PF06690.6	gi|124026917|ref|YP_001012237.1|	-	0.097	11.7	0.0	0.17	10.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
HD	PF01966.17	gi|124026918|ref|YP_001012238.1|	-	3.8e-10	39.8	0.1	6.7e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	HD	domain
TraI_2	PF07514.6	gi|124026918|ref|YP_001012238.1|	-	1.2e-06	27.5	1.0	5e-06	25.5	0.5	2.0	1	1	0	1	1	1	1	Putative	helicase
NAD_binding_8	PF13450.1	gi|124026919|ref|YP_001012239.1|	-	1.2e-07	31.6	0.0	2.8e-07	30.4	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|124026919|ref|YP_001012239.1|	-	6.2e-07	29.4	0.0	1.2e-06	28.5	0.0	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|124026919|ref|YP_001012239.1|	-	7.7e-06	25.1	0.0	0.0018	17.4	0.0	2.9	2	1	1	3	3	3	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|124026919|ref|YP_001012239.1|	-	8.7e-06	24.8	0.0	0.013	14.4	0.0	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
DAO	PF01266.19	gi|124026919|ref|YP_001012239.1|	-	1.4e-05	24.2	0.1	0.0012	17.8	0.0	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|124026919|ref|YP_001012239.1|	-	0.0054	15.2	0.0	0.012	14.1	0.0	1.5	2	0	0	2	2	2	1	HI0933-like	protein
NAD_Gly3P_dh_N	PF01210.18	gi|124026919|ref|YP_001012239.1|	-	0.033	13.9	0.0	0.1	12.3	0.0	1.8	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
XdhC_C	PF13478.1	gi|124026919|ref|YP_001012239.1|	-	0.035	14.4	0.0	0.089	13.1	0.0	1.7	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Thi4	PF01946.12	gi|124026919|ref|YP_001012239.1|	-	0.048	12.7	0.0	0.074	12.1	0.0	1.2	1	0	0	1	1	1	0	Thi4	family
3HCDH_N	PF02737.13	gi|124026919|ref|YP_001012239.1|	-	0.058	13.0	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.1	gi|124026919|ref|YP_001012239.1|	-	0.11	12.5	0.1	0.26	11.3	0.0	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|124026919|ref|YP_001012239.1|	-	0.13	11.1	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|124026919|ref|YP_001012239.1|	-	0.14	10.7	0.0	0.85	8.1	0.0	1.9	2	0	0	2	2	2	0	Tryptophan	halogenase
polyprenyl_synt	PF00348.12	gi|124026920|ref|YP_001012240.1|	-	3.8e-38	130.8	0.0	5.7e-38	130.2	0.0	1.2	1	0	0	1	1	1	1	Polyprenyl	synthetase
PCNA_N	PF00705.13	gi|124026921|ref|YP_001012241.1|	-	4.4e-14	52.0	0.0	2.2e-13	49.7	0.0	2.0	2	1	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|124026921|ref|YP_001012241.1|	-	4.4e-12	46.0	0.1	5.1e-09	36.1	0.0	2.4	2	1	0	2	2	2	2	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.11	gi|124026921|ref|YP_001012241.1|	-	2.1e-05	23.4	0.0	0.033	12.9	0.0	2.1	1	1	1	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
Rad9	PF04139.8	gi|124026921|ref|YP_001012241.1|	-	0.00022	20.4	0.0	0.00069	18.8	0.0	1.8	2	1	0	2	2	2	1	Rad9
Cadherin_2	PF08266.7	gi|124026921|ref|YP_001012241.1|	-	0.15	11.6	0.1	0.34	10.5	0.1	1.6	1	0	0	1	1	1	0	Cadherin-like
RimK	PF08443.6	gi|124026922|ref|YP_001012242.1|	-	1.4e-42	145.3	0.0	1.8e-42	144.9	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|124026922|ref|YP_001012242.1|	-	5.2e-18	64.7	0.0	7.5e-18	64.2	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|124026922|ref|YP_001012242.1|	-	7.6e-12	45.3	0.0	1.7e-11	44.2	0.0	1.5	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|124026922|ref|YP_001012242.1|	-	3.5e-09	36.7	0.0	5.7e-09	36.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|124026922|ref|YP_001012242.1|	-	2.4e-06	26.5	0.0	5.4e-05	22.1	0.0	2.3	2	1	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|124026922|ref|YP_001012242.1|	-	8.7e-05	21.9	0.0	0.00015	21.1	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ins134_P3_kin	PF05770.6	gi|124026922|ref|YP_001012242.1|	-	0.00024	20.2	0.0	0.19	10.7	0.0	2.1	1	1	1	2	2	2	2	Inositol	1,	3,	4-trisphosphate	5/6-kinase
ATPgrasp_YheCD	PF14398.1	gi|124026922|ref|YP_001012242.1|	-	0.0047	15.7	0.0	0.36	9.5	0.0	2.3	2	0	0	2	2	2	1	YheC/D	like	ATP-grasp
Dala_Dala_lig_C	PF07478.8	gi|124026922|ref|YP_001012242.1|	-	0.015	14.6	0.0	0.041	13.2	0.0	1.6	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
Arb2	PF09757.4	gi|124026922|ref|YP_001012242.1|	-	0.032	13.6	0.0	0.39	10.1	0.0	2.0	2	0	0	2	2	2	0	Arb2	domain
DUF4343	PF14243.1	gi|124026922|ref|YP_001012242.1|	-	0.041	13.7	0.1	0.068	13.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4343)
ATP-grasp	PF02222.17	gi|124026922|ref|YP_001012242.1|	-	0.056	12.8	0.0	0.094	12.0	0.0	1.4	1	1	0	1	1	1	0	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|124026922|ref|YP_001012242.1|	-	0.063	12.4	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
SIS	PF01380.17	gi|124026924|ref|YP_001012244.1|	-	0.017	14.6	0.4	0.056	13.0	0.1	1.7	1	1	1	2	2	2	0	SIS	domain
PNP_UDP_1	PF01048.15	gi|124026925|ref|YP_001012245.1|	-	6.1e-51	172.6	0.0	7e-51	172.4	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF1845	PF08900.6	gi|124026925|ref|YP_001012245.1|	-	0.084	12.1	0.0	0.15	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1845)
Methyltransf_26	PF13659.1	gi|124026926|ref|YP_001012246.1|	-	7.6e-15	54.9	0.0	1.2e-14	54.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124026926|ref|YP_001012246.1|	-	4e-09	37.0	0.0	7.2e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124026926|ref|YP_001012246.1|	-	1.1e-06	28.2	0.0	1.7e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|124026926|ref|YP_001012246.1|	-	3.5e-06	26.5	0.0	4.9e-06	26.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.13	gi|124026926|ref|YP_001012246.1|	-	9.9e-06	24.8	0.0	0.003	16.7	0.0	2.3	2	0	0	2	2	2	2	ubiE/COQ5	methyltransferase	family
Cons_hypoth95	PF03602.10	gi|124026926|ref|YP_001012246.1|	-	3.1e-05	23.4	0.0	4.8e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_30	PF05430.6	gi|124026926|ref|YP_001012246.1|	-	9.6e-05	22.0	0.0	0.00017	21.2	0.0	1.3	1	0	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_11	PF08241.7	gi|124026926|ref|YP_001012246.1|	-	0.00013	22.3	0.0	0.00038	20.8	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|124026926|ref|YP_001012246.1|	-	0.00034	20.3	0.0	0.0026	17.5	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Spermine_synth	PF01564.12	gi|124026926|ref|YP_001012246.1|	-	0.0063	15.4	0.0	0.0091	14.9	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase
CMAS	PF02353.15	gi|124026926|ref|YP_001012246.1|	-	0.017	14.1	0.0	0.031	13.3	0.0	1.4	1	1	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.12	gi|124026926|ref|YP_001012246.1|	-	0.026	13.5	0.0	0.088	11.8	0.0	1.7	1	1	0	1	1	1	0	Putative	methyltransferase
Methyltransf_15	PF09445.5	gi|124026926|ref|YP_001012246.1|	-	0.031	13.8	0.0	0.047	13.2	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.11	gi|124026926|ref|YP_001012246.1|	-	0.047	13.2	0.0	0.09	12.3	0.0	1.5	1	1	0	1	1	1	0	Met-10+	like-protein
Methyltransf_12	PF08242.7	gi|124026926|ref|YP_001012246.1|	-	0.065	13.7	0.0	0.18	12.3	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.14	gi|124026926|ref|YP_001012246.1|	-	0.071	12.6	0.0	0.13	11.8	0.0	1.5	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
SWIM	PF04434.12	gi|124026927|ref|YP_001012247.1|	-	5.9e-06	25.6	0.1	9.1e-06	25.0	0.1	1.3	1	0	0	1	1	1	1	SWIM	zinc	finger
hEGF	PF12661.2	gi|124026927|ref|YP_001012247.1|	-	0.035	14.1	1.2	0.057	13.5	0.8	1.3	1	0	0	1	1	1	0	Human	growth	factor-like	EGF
UbiA	PF01040.13	gi|124026928|ref|YP_001012248.1|	-	3.2e-33	115.0	29.1	4.2e-33	114.6	20.1	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Dispanin	PF04505.7	gi|124026928|ref|YP_001012248.1|	-	0.077	12.5	1.3	0.32	10.5	0.3	2.6	2	0	0	2	2	2	0	Interferon-induced	transmembrane	protein
TYW3	PF02676.9	gi|124026929|ref|YP_001012249.1|	-	2.6e-34	118.1	0.0	3.2e-34	117.8	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	TYW3
Nop	PF01798.13	gi|124026933|ref|YP_001012253.1|	-	7.7e-53	177.8	0.1	1.3e-52	177.0	0.1	1.3	1	0	0	1	1	1	1	Putative	snoRNA	binding	domain
NOSIC	PF08060.8	gi|124026933|ref|YP_001012253.1|	-	2.5e-23	81.6	0.0	6e-23	80.3	0.0	1.7	1	0	0	1	1	1	1	NOSIC	(NUC001)	domain
ApoC-I	PF04691.7	gi|124026933|ref|YP_001012253.1|	-	0.0091	15.6	1.2	22	4.8	0.0	3.5	3	0	0	3	3	3	0	Apolipoprotein	C-I	(ApoC-1)
DUF3173	PF11372.3	gi|124026933|ref|YP_001012253.1|	-	0.02	14.5	0.0	0.045	13.3	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3173)
Radical_SAM	PF04055.16	gi|124026933|ref|YP_001012253.1|	-	0.095	12.8	1.1	1.2	9.2	0.0	2.6	2	1	0	2	2	2	0	Radical	SAM	superfamily
RuvA_C	PF07499.8	gi|124026933|ref|YP_001012253.1|	-	0.76	9.9	4.5	0.88	9.7	0.1	3.2	4	0	0	4	4	4	0	RuvA,	C-terminal	domain
HHH_5	PF14520.1	gi|124026933|ref|YP_001012253.1|	-	1.4	9.1	8.4	1.4	9.1	0.9	3.7	4	2	0	4	4	4	0	Helix-hairpin-helix	domain
Fibrillarin	PF01269.12	gi|124026934|ref|YP_001012254.1|	-	7.7e-103	342.3	0.0	8.8e-103	342.1	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.14	gi|124026934|ref|YP_001012254.1|	-	0.0032	17.0	0.0	0.006	16.1	0.0	1.4	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FtsJ	PF01728.14	gi|124026934|ref|YP_001012254.1|	-	0.024	14.6	0.0	0.029	14.3	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
DUF61	PF01886.11	gi|124026935|ref|YP_001012255.1|	-	2.9e-13	49.7	0.0	3.8e-13	49.4	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF61
HTH_3	PF01381.17	gi|124026936|ref|YP_001012256.1|	-	4e-07	29.7	0.1	8.4e-07	28.7	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|124026936|ref|YP_001012256.1|	-	4.2e-07	29.9	0.1	8.2e-07	28.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|124026936|ref|YP_001012256.1|	-	5e-06	26.6	0.1	1.9e-05	24.7	0.1	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|124026936|ref|YP_001012256.1|	-	0.00039	20.2	0.1	0.3	10.9	0.0	2.9	2	1	1	3	3	3	2	Helix-turn-helix	domain	of	resolvase
Terminase_5	PF06056.7	gi|124026936|ref|YP_001012256.1|	-	0.0098	15.4	0.0	3.5	7.2	0.0	2.4	2	0	0	2	2	2	2	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_23	PF13384.1	gi|124026936|ref|YP_001012256.1|	-	0.017	14.7	0.1	0.27	10.9	0.0	2.5	2	0	0	2	2	2	0	Homeodomain-like	domain
MerR_1	PF13411.1	gi|124026936|ref|YP_001012256.1|	-	0.023	14.4	0.1	2	8.2	0.0	3.2	3	0	0	3	3	3	0	MerR	HTH	family	regulatory	protein
HTH_25	PF13413.1	gi|124026936|ref|YP_001012256.1|	-	0.025	14.2	1.1	0.063	12.9	0.1	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
TetR_N	PF00440.18	gi|124026936|ref|YP_001012256.1|	-	0.075	12.6	0.1	17	5.1	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
tRNA-synt_2	PF00152.15	gi|124026937|ref|YP_001012257.1|	-	4e-91	305.2	0.0	4.8e-91	305.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|124026937|ref|YP_001012257.1|	-	4.7e-14	52.0	0.2	8.4e-14	51.1	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DUF4539	PF15072.1	gi|124026937|ref|YP_001012257.1|	-	0.0048	16.5	0.0	0.0095	15.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4539)
tRNA-synt_2d	PF01409.15	gi|124026937|ref|YP_001012257.1|	-	0.0075	15.4	0.3	4.4	6.4	0.0	2.7	3	0	0	3	3	3	2	tRNA	synthetases	class	II	core	domain	(F)
Radical_SAM	PF04055.16	gi|124026938|ref|YP_001012258.1|	-	1.3e-16	61.2	0.0	2.2e-16	60.4	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|124026938|ref|YP_001012258.1|	-	3.4e-05	23.8	0.0	5.9e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124026938|ref|YP_001012258.1|	-	0.00012	22.1	0.0	0.00021	21.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.1	gi|124026938|ref|YP_001012258.1|	-	0.00053	20.2	0.0	0.0012	19.1	0.0	1.6	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
TcdB_toxin_midN	PF12256.3	gi|124026939|ref|YP_001012259.1|	-	0.15	11.5	0.0	0.29	10.5	0.0	1.4	1	0	0	1	1	1	0	Insecticide	toxin	TcdB	middle/N-terminal	region
Cm_res_leader	PF08077.6	gi|124026939|ref|YP_001012259.1|	-	0.65	9.8	2.9	19	5.1	0.2	3.0	3	0	0	3	3	3	0	Chloramphenicol	resistance	gene	leader	peptide
Radical_SAM	PF04055.16	gi|124026940|ref|YP_001012260.1|	-	5.9e-24	85.1	0.0	1.3e-23	84.0	0.0	1.6	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124026940|ref|YP_001012260.1|	-	3.5e-08	33.6	0.0	5.8e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|124026940|ref|YP_001012260.1|	-	9.3e-08	32.1	0.0	2.3e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.1	gi|124026940|ref|YP_001012260.1|	-	2e-07	31.2	0.2	4e-07	30.2	0.1	1.5	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
EndIII_4Fe-2S	PF10576.4	gi|124026940|ref|YP_001012260.1|	-	0.1	12.8	2.4	0.26	11.5	1.6	1.7	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
5-FTHF_cyc-lig	PF01812.15	gi|124026941|ref|YP_001012261.1|	-	1.3e-28	99.9	0.0	1.7e-28	99.7	0.0	1.1	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
Mrr_cat	PF04471.7	gi|124026942|ref|YP_001012262.1|	-	1.7e-05	24.6	0.1	2.7e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	Restriction	endonuclease
NERD	PF08378.6	gi|124026942|ref|YP_001012262.1|	-	0.0017	18.6	0.1	0.0036	17.5	0.0	1.7	1	1	0	1	1	1	1	Nuclease-related	domain
eIF-6	PF01912.13	gi|124026942|ref|YP_001012262.1|	-	0.0068	15.5	0.0	0.011	14.8	0.0	1.3	1	0	0	1	1	1	1	eIF-6	family
CoA_binding_2	PF13380.1	gi|124026942|ref|YP_001012262.1|	-	0.014	15.5	0.2	0.036	14.2	0.1	1.6	1	0	0	1	1	1	0	CoA	binding	domain
YbaB_DNA_bd	PF02575.11	gi|124026942|ref|YP_001012262.1|	-	0.072	12.9	0.2	0.26	11.2	0.1	2.0	1	1	1	2	2	2	0	YbaB/EbfC	DNA-binding	family
UPF0102	PF02021.12	gi|124026942|ref|YP_001012262.1|	-	0.078	12.9	0.1	0.17	11.8	0.1	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0102
HSDR_N_2	PF13588.1	gi|124026942|ref|YP_001012262.1|	-	0.11	12.3	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
DS	PF01916.12	gi|124026943|ref|YP_001012263.1|	-	2.5e-74	250.0	0.0	2.9e-74	249.8	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Methyltransf_18	PF12847.2	gi|124026944|ref|YP_001012264.1|	-	9.9e-12	45.4	0.0	1.3e-11	45.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124026944|ref|YP_001012264.1|	-	7.6e-10	38.6	0.0	1.1e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.1	gi|124026944|ref|YP_001012264.1|	-	1.2e-09	37.8	0.0	1.6e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124026944|ref|YP_001012264.1|	-	8.4e-09	35.7	0.0	1.4e-08	35.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124026944|ref|YP_001012264.1|	-	4.4e-08	33.1	0.0	5.6e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124026944|ref|YP_001012264.1|	-	7.7e-06	26.3	0.0	1.1e-05	25.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|124026944|ref|YP_001012264.1|	-	2.6e-05	23.4	0.0	3.4e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.9	gi|124026944|ref|YP_001012264.1|	-	3.3e-05	23.3	0.0	4.5e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
DOT1	PF08123.8	gi|124026944|ref|YP_001012264.1|	-	4.9e-05	22.7	0.0	0.0028	17.0	0.0	2.0	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
CMAS	PF02353.15	gi|124026944|ref|YP_001012264.1|	-	8.2e-05	21.8	0.0	0.0001	21.4	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Cons_hypoth95	PF03602.10	gi|124026944|ref|YP_001012264.1|	-	0.00012	21.5	0.0	0.00018	20.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
RrnaAD	PF00398.15	gi|124026944|ref|YP_001012264.1|	-	0.00028	19.9	0.0	0.00034	19.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_15	PF09445.5	gi|124026944|ref|YP_001012264.1|	-	0.00029	20.4	0.0	0.00031	20.3	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Ubie_methyltran	PF01209.13	gi|124026944|ref|YP_001012264.1|	-	0.00029	20.0	0.0	0.00041	19.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.1	gi|124026944|ref|YP_001012264.1|	-	0.00054	19.7	0.0	0.00071	19.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
tRNA_U5-meth_tr	PF05958.6	gi|124026944|ref|YP_001012264.1|	-	0.0024	16.6	0.0	0.0032	16.2	0.0	1.1	1	0	0	1	1	1	1	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_4	PF02390.12	gi|124026944|ref|YP_001012264.1|	-	0.0032	16.5	0.0	0.0041	16.2	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_12	PF08242.7	gi|124026944|ref|YP_001012264.1|	-	0.0044	17.4	0.0	0.0062	16.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|124026944|ref|YP_001012264.1|	-	0.011	14.9	0.0	0.016	14.3	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_32	PF13679.1	gi|124026944|ref|YP_001012264.1|	-	0.025	14.2	0.0	0.031	13.9	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.11	gi|124026944|ref|YP_001012264.1|	-	0.093	12.3	0.0	0.099	12.2	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_8	PF05148.10	gi|124026944|ref|YP_001012264.1|	-	0.14	11.7	0.1	0.2	11.2	0.1	1.4	1	1	0	1	1	1	0	Hypothetical	methyltransferase
Ubie_methyltran	PF01209.13	gi|124026945|ref|YP_001012265.1|	-	1.2e-12	47.4	0.0	1.5e-12	47.1	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.7	gi|124026945|ref|YP_001012265.1|	-	2.5e-08	34.2	0.0	3.9e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124026945|ref|YP_001012265.1|	-	2.4e-06	27.8	0.2	5.9e-06	26.5	0.1	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|124026945|ref|YP_001012265.1|	-	3.1e-05	23.7	0.0	4e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124026945|ref|YP_001012265.1|	-	0.0013	19.2	0.0	0.0029	18.1	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|124026945|ref|YP_001012265.1|	-	0.038	13.5	0.0	0.062	12.8	0.0	1.4	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Rieske	PF00355.21	gi|124026945|ref|YP_001012265.1|	-	0.058	12.9	0.3	0.12	11.9	0.2	1.5	1	0	0	1	1	1	0	Rieske	[2Fe-2S]	domain
DEPP	PF15343.1	gi|124026945|ref|YP_001012265.1|	-	0.1	12.1	0.0	0.15	11.6	0.0	1.2	1	0	0	1	1	1	0	Decidual	protein	induced	by	progesterone	family
Methyltransf_12	PF08242.7	gi|124026945|ref|YP_001012265.1|	-	0.15	12.5	0.0	0.23	11.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Flavoprotein	PF02441.14	gi|124026946|ref|YP_001012266.1|	-	5.9e-26	90.6	0.0	8.2e-26	90.1	0.0	1.1	1	0	0	1	1	1	1	Flavoprotein
E3_binding	PF02817.12	gi|124026946|ref|YP_001012266.1|	-	0.012	15.2	0.0	0.035	13.7	0.0	1.8	1	0	0	1	1	1	0	e3	binding	domain
DUF562	PF04763.7	gi|124026946|ref|YP_001012266.1|	-	0.1	11.8	0.0	0.16	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF562)
GST_C	PF00043.20	gi|124026947|ref|YP_001012267.1|	-	0.082	12.9	0.1	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Glutathione	S-transferase,	C-terminal	domain
tRNA_int_endo	PF01974.12	gi|124026948|ref|YP_001012268.1|	-	3.3e-31	106.9	0.0	4.7e-31	106.4	0.0	1.2	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|124026948|ref|YP_001012268.1|	-	4.6e-19	67.7	0.1	7.3e-19	67.0	0.1	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_end_N2	PF12928.2	gi|124026948|ref|YP_001012268.1|	-	0.17	11.4	0.8	0.37	10.2	0.5	1.6	1	1	0	1	1	1	0	tRNA-splicing	endonuclease	subunit	sen54	N-term
PhoU_div	PF01865.11	gi|124026949|ref|YP_001012269.1|	-	2.9e-12	46.2	6.3	5e-12	45.4	4.4	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.14	gi|124026949|ref|YP_001012269.1|	-	0.00057	20.2	11.7	0.002	18.5	3.5	2.8	1	1	2	3	3	3	1	PhoU	domain
DUF4164	PF13747.1	gi|124026949|ref|YP_001012269.1|	-	0.0042	17.1	1.0	0.0042	17.1	0.7	2.8	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4164)
Baculo_PEP_C	PF04513.7	gi|124026949|ref|YP_001012269.1|	-	0.02	14.6	6.1	3.8	7.3	0.4	3.2	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Seryl_tRNA_N	PF02403.17	gi|124026949|ref|YP_001012269.1|	-	0.038	13.9	4.5	1.5	8.8	0.0	2.8	2	1	1	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
BAR	PF03114.13	gi|124026949|ref|YP_001012269.1|	-	0.073	12.5	0.6	2.2	7.7	0.0	2.1	2	0	0	2	2	2	0	BAR	domain
DivIC	PF04977.10	gi|124026949|ref|YP_001012269.1|	-	0.077	12.4	2.1	6.4	6.3	0.0	3.0	2	1	0	2	2	2	0	Septum	formation	initiator
Syntaxin	PF00804.20	gi|124026949|ref|YP_001012269.1|	-	0.097	12.8	4.3	1.2	9.3	0.7	3.2	1	1	1	3	3	3	0	Syntaxin
Carbpep_Y_N	PF05388.6	gi|124026949|ref|YP_001012269.1|	-	0.13	12.3	0.9	0.7	10.0	0.1	2.3	2	1	1	3	3	3	0	Carboxypeptidase	Y	pro-peptide
DASH_Duo1	PF08651.5	gi|124026949|ref|YP_001012269.1|	-	0.2	11.2	1.7	14	5.3	0.0	3.1	3	0	0	3	3	3	0	DASH	complex	subunit	Duo1
Syntaxin-6_N	PF09177.6	gi|124026949|ref|YP_001012269.1|	-	0.25	11.7	6.9	0.74	10.2	0.3	3.1	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
COG5	PF10392.4	gi|124026949|ref|YP_001012269.1|	-	0.32	10.9	4.7	2.1	8.2	0.4	2.8	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
HisKA	PF00512.20	gi|124026949|ref|YP_001012269.1|	-	0.4	10.6	4.9	1.4	8.9	0.1	3.4	3	2	0	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
FlaC_arch	PF05377.6	gi|124026949|ref|YP_001012269.1|	-	0.48	10.3	4.2	19	5.2	0.0	4.0	4	1	0	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
Reo_sigmaC	PF04582.7	gi|124026949|ref|YP_001012269.1|	-	0.52	9.4	4.7	0.71	8.9	0.9	1.9	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
Laminin_II	PF06009.7	gi|124026949|ref|YP_001012269.1|	-	0.56	9.9	4.6	37	4.0	0.2	3.1	1	1	1	3	3	3	0	Laminin	Domain	II
Radical_SAM	PF04055.16	gi|124026950|ref|YP_001012270.1|	-	4.1e-21	75.8	0.1	2.1e-20	73.5	0.0	2.1	3	0	0	3	3	3	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|124026950|ref|YP_001012270.1|	-	6e-14	51.9	0.2	1.8e-13	50.3	0.2	1.9	1	0	0	1	1	1	1	B12	binding	domain
Baculo_PEP_C	PF04513.7	gi|124026951|ref|YP_001012271.1|	-	0.0023	17.7	1.0	0.09	12.6	0.2	2.1	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
TetR_C_9	PF14514.1	gi|124026951|ref|YP_001012271.1|	-	0.0048	16.7	0.4	0.0091	15.8	0.1	1.7	2	0	0	2	2	2	1	Transcriptional	regulator,	TetR,	C-terminal
Latarcin	PF10279.4	gi|124026951|ref|YP_001012271.1|	-	0.0051	16.9	2.2	0.37	11.0	0.1	2.3	1	1	1	2	2	2	2	Latarcin	precursor
Syntaxin	PF00804.20	gi|124026951|ref|YP_001012271.1|	-	0.098	12.8	1.5	7.7	6.7	0.1	2.9	3	0	0	3	3	3	0	Syntaxin
DUF4319	PF14203.1	gi|124026951|ref|YP_001012271.1|	-	0.14	11.7	0.3	11	5.6	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4319)
H-kinase_dim	PF02895.9	gi|124026951|ref|YP_001012271.1|	-	0.21	11.9	1.8	0.85	10.0	1.2	2.2	1	1	0	1	1	1	0	Signal	transducing	histidine	kinase,	homodimeric	domain
Nup54	PF13874.1	gi|124026951|ref|YP_001012271.1|	-	0.29	10.7	1.4	5.1	6.7	0.1	2.2	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
Troponin	PF00992.15	gi|124026952|ref|YP_001012272.1|	-	0.089	12.8	2.3	0.13	12.3	1.6	1.2	1	0	0	1	1	1	0	Troponin
tRNA-synt_2b	PF00587.20	gi|124026953|ref|YP_001012273.1|	-	6.4e-52	175.6	0.2	9.5e-52	175.0	0.1	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|124026953|ref|YP_001012273.1|	-	1e-21	76.6	1.5	1e-21	76.6	0.1	1.8	2	0	0	2	2	2	1	Anticodon	binding	domain
Rad50_zn_hook	PF04423.9	gi|124026953|ref|YP_001012273.1|	-	0.02	14.3	0.1	0.02	14.3	0.0	2.7	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
zf-C2HC_2	PF13913.1	gi|124026953|ref|YP_001012273.1|	-	0.047	13.3	0.2	0.047	13.3	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Zn-ribbon_8	PF09723.5	gi|124026953|ref|YP_001012273.1|	-	0.063	13.2	0.2	8.8	6.3	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|124026953|ref|YP_001012273.1|	-	3	8.3	5.7	34	5.0	0.1	3.4	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
Arginase	PF00491.16	gi|124026954|ref|YP_001012274.1|	-	9.7e-78	261.2	0.0	1.1e-77	261.0	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
AD	PF09793.4	gi|124026954|ref|YP_001012274.1|	-	0.15	11.9	0.0	0.32	10.8	0.0	1.5	1	0	0	1	1	1	0	Anticodon-binding	domain
DNA_RNApol_7kD	PF03604.8	gi|124026955|ref|YP_001012275.1|	-	9.4e-09	34.5	4.4	2e-08	33.5	3.0	1.6	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
OrfB_Zn_ribbon	PF07282.6	gi|124026955|ref|YP_001012275.1|	-	0.00097	18.7	0.1	0.0012	18.4	0.1	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-C2H2	PF00096.21	gi|124026955|ref|YP_001012275.1|	-	0.0019	18.4	1.5	0.56	10.6	0.0	2.2	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
Zn-ribbon_8	PF09723.5	gi|124026955|ref|YP_001012275.1|	-	0.0029	17.5	1.8	0.0072	16.2	1.2	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|124026955|ref|YP_001012275.1|	-	0.0048	16.7	1.9	0.0055	16.5	0.0	1.8	2	0	0	2	2	2	1	C2H2-type	zinc	finger
zf-ribbon_3	PF13248.1	gi|124026955|ref|YP_001012275.1|	-	0.0074	15.4	3.1	0.06	12.5	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124026955|ref|YP_001012275.1|	-	0.0088	15.4	1.5	0.46	10.0	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
CpXC	PF14353.1	gi|124026955|ref|YP_001012275.1|	-	0.01	15.7	1.0	1.4	8.9	0.0	2.1	1	1	1	2	2	2	0	CpXC	protein
Mu-like_Com	PF10122.4	gi|124026955|ref|YP_001012275.1|	-	0.017	14.1	0.4	3.3	6.8	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zf-C2H2_4	PF13894.1	gi|124026955|ref|YP_001012275.1|	-	0.018	15.3	0.7	6.3	7.3	0.0	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Tmemb_55A	PF09788.4	gi|124026955|ref|YP_001012275.1|	-	0.018	14.1	0.0	0.019	14.0	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein	55A
Nudix_N_2	PF14803.1	gi|124026955|ref|YP_001012275.1|	-	0.021	14.5	0.4	4.5	7.0	0.0	2.1	2	0	0	2	2	2	0	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.2	gi|124026955|ref|YP_001012275.1|	-	0.024	14.4	5.6	3.9	7.3	4.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124026955|ref|YP_001012275.1|	-	0.027	14.0	1.6	3	7.5	0.0	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|124026955|ref|YP_001012275.1|	-	0.034	13.7	1.1	5.2	6.7	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-H2C2_2	PF13465.1	gi|124026955|ref|YP_001012275.1|	-	0.046	14.0	1.9	1.1	9.6	0.3	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
DZR	PF12773.2	gi|124026955|ref|YP_001012275.1|	-	0.046	13.5	0.2	0.086	12.6	0.1	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-CSL	PF05207.8	gi|124026955|ref|YP_001012275.1|	-	0.051	13.0	1.5	0.11	12.0	1.0	1.6	1	1	0	1	1	1	0	CSL	zinc	finger
zinc_ribbon_4	PF13717.1	gi|124026955|ref|YP_001012275.1|	-	0.058	13.0	1.9	5.3	6.8	0.0	2.7	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-HIT	PF04438.11	gi|124026955|ref|YP_001012275.1|	-	0.062	12.9	2.3	1.7	8.3	0.0	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
HypA	PF01155.14	gi|124026955|ref|YP_001012275.1|	-	0.074	12.7	0.0	0.086	12.5	0.0	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-CHCC	PF10276.4	gi|124026955|ref|YP_001012275.1|	-	0.094	12.5	3.2	0.23	11.3	0.2	2.1	2	0	0	2	2	2	0	Zinc-finger	domain
Zn_ribbon_recom	PF13408.1	gi|124026955|ref|YP_001012275.1|	-	0.095	12.9	2.1	2.4	8.4	0.2	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-C2H2_3	PF13878.1	gi|124026955|ref|YP_001012275.1|	-	0.11	12.0	2.9	0.16	11.5	0.1	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DUF2296	PF10058.4	gi|124026955|ref|YP_001012275.1|	-	0.19	11.4	2.1	2.2	8.0	0.1	2.1	1	1	1	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
UPF0547	PF10571.4	gi|124026955|ref|YP_001012275.1|	-	0.23	11.2	4.6	0.91	9.2	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Lar_restr_allev	PF14354.1	gi|124026955|ref|YP_001012275.1|	-	0.25	11.6	1.4	5.5	7.3	1.0	2.1	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-Mss51	PF13824.1	gi|124026955|ref|YP_001012275.1|	-	0.78	9.6	3.6	10	6.0	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
PyrI_C	PF02748.10	gi|124026955|ref|YP_001012275.1|	-	0.87	9.0	3.4	7.7	6.0	0.6	2.1	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Zn_Tnp_IS1	PF03811.8	gi|124026955|ref|YP_001012275.1|	-	2.2	7.8	4.6	3.3	7.2	0.2	2.1	2	0	0	2	2	2	0	InsA	N-terminal	domain
TF_Zn_Ribbon	PF08271.7	gi|124026955|ref|YP_001012275.1|	-	3	7.2	5.1	8	5.8	0.2	2.4	2	1	0	2	2	2	0	TFIIB	zinc-binding
SUI1	PF01253.17	gi|124026956|ref|YP_001012276.1|	-	8.9e-26	89.5	0.5	1e-25	89.3	0.3	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.9	gi|124026956|ref|YP_001012276.1|	-	0.026	14.7	0.1	0.034	14.3	0.1	1.4	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
TFIIB	PF00382.14	gi|124026957|ref|YP_001012277.1|	-	3.8e-37	125.9	6.5	2.4e-18	65.6	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|124026957|ref|YP_001012277.1|	-	9.7e-15	53.6	0.7	1.8e-14	52.7	0.5	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|124026957|ref|YP_001012277.1|	-	0.00013	21.2	0.2	0.00013	21.2	0.2	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|124026957|ref|YP_001012277.1|	-	0.0003	20.2	0.2	0.0003	20.2	0.2	2.5	3	0	0	3	3	3	1	AsnC-type	helix-turn-helix	domain
GerE	PF00196.14	gi|124026957|ref|YP_001012277.1|	-	0.00042	19.5	0.0	0.004	16.4	0.0	2.3	2	1	1	3	3	3	1	Bacterial	regulatory	proteins,	luxR	family
Cyclin_N	PF00134.18	gi|124026957|ref|YP_001012277.1|	-	0.0032	17.0	0.1	0.011	15.2	0.0	1.8	2	0	0	2	2	2	1	Cyclin,	N-terminal	domain
Sigma70_r4_2	PF08281.7	gi|124026957|ref|YP_001012277.1|	-	0.0044	16.4	0.3	0.016	14.6	0.1	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_Tnp_ISL3	PF13542.1	gi|124026957|ref|YP_001012277.1|	-	0.016	14.3	0.6	0.67	9.1	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.1	gi|124026957|ref|YP_001012277.1|	-	0.022	14.4	4.1	0.064	12.9	0.1	3.3	2	1	0	2	2	2	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|124026957|ref|YP_001012277.1|	-	0.029	13.7	0.1	0.029	13.7	0.1	2.2	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Cyclin_C	PF02984.14	gi|124026957|ref|YP_001012277.1|	-	0.03	14.2	0.0	5.4	6.9	0.0	2.4	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
DUF3562	PF12085.3	gi|124026957|ref|YP_001012277.1|	-	0.039	13.7	1.5	4.2	7.2	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3562)
tRNA-synt_1f	PF01921.13	gi|124026958|ref|YP_001012278.1|	-	5.3e-94	314.8	0.0	6.9e-94	314.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
TrmB	PF01978.14	gi|124026959|ref|YP_001012279.1|	-	1.2e-06	28.0	0.1	2.2e-06	27.2	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|124026959|ref|YP_001012279.1|	-	0.00018	21.1	0.7	0.00035	20.1	0.4	1.6	1	1	0	1	1	1	1	MarR	family
KorB	PF08535.5	gi|124026959|ref|YP_001012279.1|	-	0.0002	21.4	0.0	0.14	12.3	0.0	2.3	2	0	0	2	2	2	2	KorB	domain
GntR	PF00392.16	gi|124026959|ref|YP_001012279.1|	-	0.0088	15.4	0.1	0.018	14.4	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HrcA_DNA-bdg	PF03444.10	gi|124026959|ref|YP_001012279.1|	-	0.0095	15.3	0.0	0.017	14.5	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
TFIIE_alpha	PF02002.12	gi|124026959|ref|YP_001012279.1|	-	0.013	15.0	0.0	0.018	14.5	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
MarR	PF01047.17	gi|124026959|ref|YP_001012279.1|	-	0.024	14.3	0.0	0.061	13.0	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_27	PF13463.1	gi|124026959|ref|YP_001012279.1|	-	0.029	14.6	0.0	0.15	12.4	0.0	2.0	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|124026959|ref|YP_001012279.1|	-	0.033	13.8	0.0	0.078	12.6	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
GerE	PF00196.14	gi|124026959|ref|YP_001012279.1|	-	0.047	13.0	0.0	0.14	11.5	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_38	PF13936.1	gi|124026959|ref|YP_001012279.1|	-	0.051	13.1	0.1	0.12	11.9	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|124026959|ref|YP_001012279.1|	-	0.056	13.5	0.0	0.14	12.3	0.0	1.6	1	1	0	1	1	1	0	Transcriptional	regulator
RP-C	PF03428.8	gi|124026959|ref|YP_001012279.1|	-	0.069	12.5	0.3	4.5	6.6	0.0	2.2	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
Replic_Relax	PF13814.1	gi|124026959|ref|YP_001012279.1|	-	0.11	12.3	0.1	0.14	12.0	0.1	1.1	1	0	0	1	1	1	0	Replication-relaxation
Spermine_synth	PF01564.12	gi|124026960|ref|YP_001012280.1|	-	6.5e-70	234.8	0.0	8.3e-70	234.5	0.0	1.0	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_26	PF13659.1	gi|124026960|ref|YP_001012280.1|	-	4.8e-07	29.8	0.0	1.1e-06	28.6	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124026960|ref|YP_001012280.1|	-	7e-05	23.3	0.0	0.00011	22.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124026960|ref|YP_001012280.1|	-	0.00043	20.7	0.0	0.00096	19.5	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_30	PF05430.6	gi|124026960|ref|YP_001012280.1|	-	0.0064	16.1	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.9	gi|124026960|ref|YP_001012280.1|	-	0.012	15.0	0.0	0.016	14.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|124026960|ref|YP_001012280.1|	-	0.014	15.7	0.0	0.052	13.9	0.0	1.9	1	1	0	2	2	2	0	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|124026960|ref|YP_001012280.1|	-	0.02	14.3	0.0	0.028	13.8	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
CxxCxxCC	PF03692.10	gi|124026961|ref|YP_001012281.1|	-	6.3e-12	45.7	0.0	9.5e-12	45.2	0.0	1.2	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
DUF357	PF04010.8	gi|124026962|ref|YP_001012282.1|	-	6.3e-21	73.8	2.4	9.5e-21	73.2	1.7	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
CTP_transf_2	PF01467.21	gi|124026962|ref|YP_001012282.1|	-	3.4e-11	43.4	0.0	8.6e-11	42.1	0.0	1.7	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|124026962|ref|YP_001012282.1|	-	0.12	11.9	0.0	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	FAD	synthetase
DUF1028	PF06267.7	gi|124026963|ref|YP_001012283.1|	-	2.5e-64	216.2	0.0	2.8e-64	216.0	0.0	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
Isochorismatase	PF00857.15	gi|124026965|ref|YP_001012285.1|	-	4.1e-42	144.0	0.0	4.9e-42	143.8	0.0	1.1	1	0	0	1	1	1	1	Isochorismatase	family
Helicase_C_2	PF13307.1	gi|124026966|ref|YP_001012286.1|	-	2.1e-25	89.5	0.0	3.9e-25	88.7	0.0	1.4	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|124026966|ref|YP_001012286.1|	-	1.7e-20	73.1	0.0	2.5e-20	72.5	0.0	1.3	1	0	0	1	1	1	1	DEAD_2
DEAD	PF00270.24	gi|124026966|ref|YP_001012286.1|	-	3.5e-08	33.1	0.0	0.0034	16.9	0.0	3.9	4	0	0	4	4	4	3	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|124026966|ref|YP_001012286.1|	-	0.0005	19.9	0.0	0.011	15.5	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|124026966|ref|YP_001012286.1|	-	0.0034	17.0	0.1	0.0034	17.0	0.1	3.7	4	0	0	4	4	4	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|124026966|ref|YP_001012286.1|	-	0.0099	16.0	0.2	5.6	7.1	0.0	3.3	3	0	0	3	3	3	1	AAA	domain
DUF3199	PF11436.3	gi|124026966|ref|YP_001012286.1|	-	0.046	13.5	0.1	1.9	8.3	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3199)
ABC_tran	PF00005.22	gi|124026967|ref|YP_001012287.1|	-	1.4e-37	129.0	0.0	2.3e-37	128.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124026967|ref|YP_001012287.1|	-	2.5e-10	40.8	0.0	3.7e-05	23.8	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|124026967|ref|YP_001012287.1|	-	0.00046	19.6	0.0	0.0051	16.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124026967|ref|YP_001012287.1|	-	0.00082	19.3	0.5	0.003	17.5	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124026967|ref|YP_001012287.1|	-	0.0011	19.1	0.5	0.0087	16.2	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|124026967|ref|YP_001012287.1|	-	0.0015	17.6	0.0	0.12	11.3	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|124026967|ref|YP_001012287.1|	-	0.0015	18.2	0.0	0.0031	17.2	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
Rad17	PF03215.10	gi|124026967|ref|YP_001012287.1|	-	0.0016	17.1	0.0	0.0021	16.7	0.0	1.1	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
SMC_N	PF02463.14	gi|124026967|ref|YP_001012287.1|	-	0.0017	17.6	0.0	0.24	10.5	0.0	2.3	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|124026967|ref|YP_001012287.1|	-	0.0028	18.0	0.1	0.0053	17.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|124026967|ref|YP_001012287.1|	-	0.0038	17.1	0.0	0.024	14.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124026967|ref|YP_001012287.1|	-	0.0048	17.7	0.0	0.012	16.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124026967|ref|YP_001012287.1|	-	0.0091	16.2	0.0	0.029	14.5	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|124026967|ref|YP_001012287.1|	-	0.0093	15.7	0.3	0.031	14.0	0.1	1.9	1	1	0	1	1	1	1	Part	of	AAA	domain
NACHT	PF05729.7	gi|124026967|ref|YP_001012287.1|	-	0.013	15.1	0.3	0.053	13.1	0.1	2.0	1	1	1	2	2	2	0	NACHT	domain
ABC_ATPase	PF09818.4	gi|124026967|ref|YP_001012287.1|	-	0.014	14.0	0.0	0.7	8.4	0.1	2.8	3	0	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
DUF258	PF03193.11	gi|124026967|ref|YP_001012287.1|	-	0.029	13.5	0.0	0.048	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_28	PF13521.1	gi|124026967|ref|YP_001012287.1|	-	0.032	14.2	0.0	0.071	13.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124026967|ref|YP_001012287.1|	-	0.035	13.6	0.0	0.078	12.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|124026967|ref|YP_001012287.1|	-	0.048	13.1	0.1	0.11	11.8	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
AAA_24	PF13479.1	gi|124026967|ref|YP_001012287.1|	-	0.061	12.9	0.1	0.58	9.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|124026967|ref|YP_001012287.1|	-	0.087	12.6	0.3	0.89	9.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|124026967|ref|YP_001012287.1|	-	0.1	12.9	0.2	0.21	11.8	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|124026967|ref|YP_001012287.1|	-	0.12	12.8	0.0	0.26	11.8	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
BPD_transp_1	PF00528.17	gi|124026968|ref|YP_001012288.1|	-	9.5e-19	67.6	43.7	2.9e-13	49.7	9.5	3.6	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.1	gi|124026969|ref|YP_001012289.1|	-	2.1e-18	66.5	0.1	4.3e-18	65.5	0.1	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|124026969|ref|YP_001012289.1|	-	6.6e-15	55.5	0.2	1.3e-14	54.6	0.1	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|124026969|ref|YP_001012289.1|	-	1.2e-11	44.9	1.7	2.7e-11	43.7	1.2	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|124026969|ref|YP_001012289.1|	-	1.6e-07	31.1	0.1	6.4e-07	29.2	0.0	1.9	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Shisa	PF13908.1	gi|124026969|ref|YP_001012289.1|	-	1.3e-05	25.4	0.6	2.2e-05	24.7	0.4	1.3	1	0	0	1	1	1	1	Wnt	and	FGF	inhibitory	regulator
Trypan_PARP	PF05887.6	gi|124026969|ref|YP_001012289.1|	-	4.3e-05	23.3	0.9	7e-05	22.6	0.7	1.3	1	0	0	1	1	1	1	Procyclic	acidic	repetitive	protein	(PARP)
DUF2611	PF11022.3	gi|124026969|ref|YP_001012289.1|	-	0.071	13.2	0.5	0.2	11.7	0.3	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2611)
Pex14_N	PF04695.8	gi|124026969|ref|YP_001012289.1|	-	0.52	10.3	4.6	0.76	9.8	2.3	2.0	2	0	0	2	2	2	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
HTH_Tnp_1	PF01527.15	gi|124026969|ref|YP_001012289.1|	-	0.57	10.1	3.3	6.2	6.8	0.0	3.2	4	0	0	4	4	4	0	Transposase
Syntaxin	PF00804.20	gi|124026970|ref|YP_001012290.1|	-	0.00034	20.7	0.7	0.00053	20.1	0.5	1.2	1	0	0	1	1	1	1	Syntaxin
FlaC_arch	PF05377.6	gi|124026970|ref|YP_001012290.1|	-	0.00089	19.1	0.9	0.19	11.6	0.0	2.3	2	0	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
DUF677	PF05055.7	gi|124026970|ref|YP_001012290.1|	-	0.00097	17.8	3.3	0.0017	17.0	2.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF677)
Baculo_PEP_C	PF04513.7	gi|124026970|ref|YP_001012290.1|	-	0.0034	17.2	1.3	0.0056	16.5	0.9	1.3	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1664	PF07889.7	gi|124026970|ref|YP_001012290.1|	-	0.0095	15.7	3.2	0.016	14.9	2.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
Phasin	PF05597.6	gi|124026970|ref|YP_001012290.1|	-	0.013	15.2	1.7	0.08	12.7	0.5	2.2	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Nsp1_C	PF05064.8	gi|124026970|ref|YP_001012290.1|	-	0.026	14.1	0.4	0.045	13.3	0.3	1.3	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
Fusion_gly	PF00523.13	gi|124026970|ref|YP_001012290.1|	-	0.029	12.4	3.5	0.019	13.0	1.1	1.6	1	1	1	2	2	2	0	Fusion	glycoprotein	F0
MscS_porin	PF12795.2	gi|124026970|ref|YP_001012290.1|	-	0.031	13.5	0.4	0.046	13.0	0.3	1.1	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
WEMBL	PF05701.6	gi|124026970|ref|YP_001012290.1|	-	0.033	12.6	5.4	0.05	12.0	3.7	1.1	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
DUF948	PF06103.6	gi|124026970|ref|YP_001012290.1|	-	0.037	13.8	3.6	0.33	10.8	2.5	2.3	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.7	gi|124026970|ref|YP_001012290.1|	-	0.042	13.6	3.4	0.068	12.9	2.4	1.2	1	0	0	1	1	1	0	Laminin	Domain	II
Bacillus_HBL	PF05791.6	gi|124026970|ref|YP_001012290.1|	-	0.058	12.7	0.4	0.09	12.1	0.3	1.2	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
Prefoldin	PF02996.12	gi|124026970|ref|YP_001012290.1|	-	0.059	13.0	3.0	3.1	7.4	0.9	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
Phage_GPO	PF05929.6	gi|124026970|ref|YP_001012290.1|	-	0.064	12.5	0.7	0.1	11.8	0.5	1.2	1	0	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
ABC_transp_aux	PF09822.4	gi|124026970|ref|YP_001012290.1|	-	0.071	12.5	0.0	0.26	10.7	0.0	1.7	2	0	0	2	2	2	0	ABC-type	uncharacterized	transport	system
Spc7	PF08317.6	gi|124026970|ref|YP_001012290.1|	-	0.1	11.2	0.8	0.38	9.3	0.7	1.7	2	0	0	2	2	2	0	Spc7	kinetochore	protein
Serine_rich	PF08824.5	gi|124026970|ref|YP_001012290.1|	-	0.1	12.2	1.1	0.19	11.4	0.8	1.3	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
RasGAP_C	PF03836.10	gi|124026970|ref|YP_001012290.1|	-	0.11	12.1	0.0	0.19	11.3	0.0	1.3	1	0	0	1	1	1	0	RasGAP	C-terminus
AIP3	PF03915.8	gi|124026970|ref|YP_001012290.1|	-	0.15	10.9	1.8	0.21	10.4	1.3	1.1	1	0	0	1	1	1	0	Actin	interacting	protein	3
DUF1515	PF07439.6	gi|124026970|ref|YP_001012290.1|	-	0.27	11.0	1.9	0.5	10.1	1.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
Reo_sigmaC	PF04582.7	gi|124026970|ref|YP_001012290.1|	-	0.39	9.8	4.6	0.64	9.1	3.2	1.2	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
Fzo_mitofusin	PF04799.8	gi|124026970|ref|YP_001012290.1|	-	0.82	9.0	4.2	0.15	11.3	0.5	1.5	2	0	0	2	2	1	0	fzo-like	conserved	region
COG2	PF06148.6	gi|124026970|ref|YP_001012290.1|	-	0.91	9.4	3.9	12	5.7	0.8	2.2	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AAA_13	PF13166.1	gi|124026970|ref|YP_001012290.1|	-	1.4	7.2	3.8	2.1	6.7	2.6	1.1	1	0	0	1	1	1	0	AAA	domain
NPV_P10	PF05531.7	gi|124026970|ref|YP_001012290.1|	-	2.5	8.3	5.5	6.5	7.0	3.8	1.6	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
LPP	PF04728.8	gi|124026970|ref|YP_001012290.1|	-	6.2	6.6	11.3	2.2	8.1	5.0	2.3	2	1	1	3	3	2	0	Lipoprotein	leucine-zipper
Metallophos	PF00149.23	gi|124026971|ref|YP_001012291.1|	-	9.2e-13	48.0	0.7	4.4e-12	45.8	0.5	2.0	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|124026971|ref|YP_001012291.1|	-	9.7e-05	22.2	0.1	0.00026	20.8	0.0	1.8	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase	superfamily	domain
Plasmodium_Vir	PF05795.6	gi|124026971|ref|YP_001012291.1|	-	0.12	11.5	0.3	0.19	10.9	0.2	1.2	1	0	0	1	1	1	0	Plasmodium	vivax	Vir	protein
DUF4366	PF14283.1	gi|124026971|ref|YP_001012291.1|	-	0.17	11.2	6.1	0.64	9.4	4.2	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4366)
CTD_bind	PF04818.8	gi|124026973|ref|YP_001012293.1|	-	0.13	12.5	0.0	7.9	6.8	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerase	II-binding	domain.
RIO1	PF01163.17	gi|124026974|ref|YP_001012294.1|	-	1.1e-47	161.8	0.0	1.5e-47	161.4	0.0	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.6	gi|124026974|ref|YP_001012294.1|	-	2.8e-22	78.5	0.7	6.7e-22	77.3	0.3	1.8	2	0	0	2	2	2	1	Rio2,	N-terminal
APH	PF01636.18	gi|124026974|ref|YP_001012294.1|	-	1.1e-09	38.4	1.5	0.00016	21.4	0.0	3.2	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|124026974|ref|YP_001012294.1|	-	4.8e-05	22.5	0.0	0.00018	20.6	0.0	1.8	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
MarR_2	PF12802.2	gi|124026974|ref|YP_001012294.1|	-	0.00015	21.3	0.5	0.015	14.9	0.1	3.6	4	0	0	4	4	4	1	MarR	family
Rrf2	PF02082.15	gi|124026974|ref|YP_001012294.1|	-	0.0006	19.8	0.0	0.012	15.6	0.0	2.5	2	0	0	2	2	2	1	Transcriptional	regulator
TrmB	PF01978.14	gi|124026974|ref|YP_001012294.1|	-	0.05	13.3	3.4	0.47	10.1	0.3	3.4	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|124026974|ref|YP_001012294.1|	-	0.13	11.8	0.5	0.95	9.1	0.0	2.6	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|124026975|ref|YP_001012295.1|	-	1.3e-10	40.9	0.1	1.9e-10	40.3	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|124026975|ref|YP_001012295.1|	-	6e-09	35.4	0.1	9.4e-09	34.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|124026975|ref|YP_001012295.1|	-	1.7e-08	33.9	0.3	2.4e-08	33.4	0.2	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|124026975|ref|YP_001012295.1|	-	2e-05	24.1	0.0	3.4e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|124026975|ref|YP_001012295.1|	-	2.1e-05	23.8	0.5	5e-05	22.6	0.4	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|124026975|ref|YP_001012295.1|	-	0.0014	18.9	0.1	0.0021	18.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|124026975|ref|YP_001012295.1|	-	0.0015	18.2	0.4	0.0046	16.6	0.1	1.9	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|124026975|ref|YP_001012295.1|	-	0.0015	18.4	0.1	0.0036	17.2	0.0	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.1	gi|124026975|ref|YP_001012295.1|	-	0.0018	18.2	0.0	0.0026	17.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|124026975|ref|YP_001012295.1|	-	0.015	14.8	0.0	0.029	13.9	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF4423	PF14394.1	gi|124026975|ref|YP_001012295.1|	-	0.047	13.2	0.0	0.061	12.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.4	gi|124026975|ref|YP_001012295.1|	-	0.094	12.6	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_Crp_2	PF13545.1	gi|124026975|ref|YP_001012295.1|	-	0.1	12.3	0.1	0.21	11.3	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
PhnA	PF03831.9	gi|124026975|ref|YP_001012295.1|	-	0.14	11.5	0.1	6.2	6.3	0.0	2.2	2	0	0	2	2	2	0	PhnA	protein
SprT-like	PF10263.4	gi|124026978|ref|YP_001012298.1|	-	0.059	13.0	0.0	0.069	12.8	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
Peptidase_M10	PF00413.19	gi|124026978|ref|YP_001012298.1|	-	0.089	12.5	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Matrixin
Peptidase_MA_2	PF13485.1	gi|124026978|ref|YP_001012298.1|	-	0.12	12.4	0.4	0.27	11.3	0.3	1.5	1	1	0	1	1	1	0	Peptidase	MA	superfamily
DUF3810	PF12725.2	gi|124026978|ref|YP_001012298.1|	-	0.2	10.5	0.2	0.27	10.0	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3810)
PhoU	PF01895.14	gi|124026979|ref|YP_001012299.1|	-	6.6e-15	55.3	2.5	5e-13	49.3	0.3	2.3	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|124026979|ref|YP_001012299.1|	-	5e-11	42.0	0.2	1.2e-10	40.8	0.2	1.6	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
tRNA_m1G_MT	PF01746.16	gi|124026980|ref|YP_001012300.1|	-	2.2e-19	69.7	0.0	5.3e-19	68.5	0.0	1.6	1	1	0	1	1	1	1	tRNA	(Guanine-1)-methyltransferase
RNA_Me_trans	PF04252.8	gi|124026980|ref|YP_001012300.1|	-	2.8e-05	23.6	0.0	4.9e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
Pribosyltran	PF00156.22	gi|124026981|ref|YP_001012301.1|	-	5.4e-19	68.1	0.0	7.8e-19	67.6	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|124026981|ref|YP_001012301.1|	-	0.0036	16.5	0.0	0.0049	16.0	0.0	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Cupin_2	PF07883.6	gi|124026982|ref|YP_001012302.1|	-	1.4e-15	56.5	0.7	2.2e-15	55.9	0.5	1.3	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.14	gi|124026982|ref|YP_001012302.1|	-	1.3e-11	44.3	0.3	1.7e-11	43.9	0.2	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_7	PF12973.2	gi|124026982|ref|YP_001012302.1|	-	3.3e-07	30.0	0.0	4.5e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
MannoseP_isomer	PF01050.13	gi|124026982|ref|YP_001012302.1|	-	0.00014	21.5	0.0	0.00018	21.1	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.7	gi|124026982|ref|YP_001012302.1|	-	0.0045	16.3	0.2	0.009	15.3	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF861)
DUF1637	PF07847.7	gi|124026982|ref|YP_001012302.1|	-	0.0099	15.2	0.0	0.013	14.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1637)
DUF4437	PF14499.1	gi|124026982|ref|YP_001012302.1|	-	0.055	12.3	0.0	0.064	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4437)
Auxin_BP	PF02041.11	gi|124026982|ref|YP_001012302.1|	-	0.056	12.8	0.0	0.083	12.3	0.0	1.4	1	1	0	1	1	1	0	Auxin	binding	protein
CENP-C_C	PF11699.3	gi|124026982|ref|YP_001012302.1|	-	0.057	13.4	0.0	0.075	13.0	0.0	1.2	1	0	0	1	1	1	0	Mif2/CENP-C	like
Asp_Arg_Hydrox	PF05118.10	gi|124026982|ref|YP_001012302.1|	-	0.067	13.0	0.0	0.11	12.3	0.0	1.3	1	1	0	1	1	1	0	Aspartyl/Asparaginyl	beta-hydroxylase
Pirin_C	PF05726.8	gi|124026982|ref|YP_001012302.1|	-	0.081	13.0	0.0	0.17	11.9	0.0	1.5	2	0	0	2	2	2	0	Pirin	C-terminal	cupin	domain
DUF460	PF04312.8	gi|124026983|ref|YP_001012303.1|	-	3.3e-47	159.4	0.2	1.7e-46	157.1	0.0	2.3	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF460)
APG6	PF04111.7	gi|124026983|ref|YP_001012303.1|	-	0.00062	18.9	4.9	0.0011	18.1	3.4	1.3	1	0	0	1	1	1	1	Autophagy	protein	Apg6
Atg14	PF10186.4	gi|124026983|ref|YP_001012303.1|	-	0.0042	16.0	5.6	0.0092	14.9	3.9	1.6	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
LURAP	PF14854.1	gi|124026983|ref|YP_001012303.1|	-	0.013	15.2	3.3	0.045	13.4	2.3	1.9	1	1	0	1	1	1	0	Leucine	rich	adaptor	protein
IF2_N	PF04760.10	gi|124026983|ref|YP_001012303.1|	-	0.019	14.6	0.0	0.12	12.0	0.0	2.5	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
Spc7	PF08317.6	gi|124026983|ref|YP_001012303.1|	-	0.038	12.6	5.8	0.072	11.7	4.0	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
S_100	PF01023.14	gi|124026983|ref|YP_001012303.1|	-	0.081	12.2	0.1	0.21	10.9	0.1	1.7	1	0	0	1	1	1	0	S-100/ICaBP	type	calcium	binding	domain
DUF3801	PF12687.2	gi|124026983|ref|YP_001012303.1|	-	0.12	11.9	1.4	0.43	10.1	1.0	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3801)
FlaC_arch	PF05377.6	gi|124026983|ref|YP_001012303.1|	-	0.15	11.9	4.0	6.4	6.7	0.2	2.9	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
AAA_13	PF13166.1	gi|124026983|ref|YP_001012303.1|	-	0.38	9.1	2.3	0.53	8.6	1.3	1.4	1	1	0	1	1	1	0	AAA	domain
Spc24	PF08286.6	gi|124026983|ref|YP_001012303.1|	-	0.4	10.3	7.2	0.86	9.3	0.3	2.6	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
DUF2730	PF10805.3	gi|124026983|ref|YP_001012303.1|	-	0.51	10.1	5.4	2.8	7.7	0.2	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
DUF1640	PF07798.6	gi|124026983|ref|YP_001012303.1|	-	0.8	9.7	7.6	8.1	6.4	5.2	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
IncA	PF04156.9	gi|124026983|ref|YP_001012303.1|	-	1.3	8.5	20.4	0.042	13.4	8.9	2.1	2	0	0	2	2	2	0	IncA	protein
DUF3166	PF11365.3	gi|124026983|ref|YP_001012303.1|	-	2.7	8.5	9.4	4.1	7.9	3.2	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3166)
IFT20	PF14931.1	gi|124026983|ref|YP_001012303.1|	-	7.2	6.5	19.1	0.073	12.9	1.5	3.4	3	0	0	3	3	3	0	Intraflagellar	transport	complex	B,	subunit	20
AdoMet_Synthase	PF01941.14	gi|124026984|ref|YP_001012304.1|	-	3.9e-177	588.6	0.2	4.5e-177	588.4	0.2	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
LSM	PF01423.17	gi|124026985|ref|YP_001012305.1|	-	6.6e-18	64.0	0.2	7.7e-18	63.8	0.1	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|124026985|ref|YP_001012305.1|	-	0.00012	21.9	0.1	0.00015	21.5	0.0	1.2	1	0	0	1	1	1	1	Ataxin	2	SM	domain
DUF883	PF05957.8	gi|124026986|ref|YP_001012306.1|	-	0.029	14.7	1.8	0.4	11.1	0.3	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
HGD-D	PF06050.8	gi|124026986|ref|YP_001012306.1|	-	0.1	11.3	0.2	0.13	11.0	0.2	1.0	1	0	0	1	1	1	0	2-hydroxyglutaryl-CoA	dehydratase,	D-component
Lycopene_cycl	PF05834.7	gi|124026987|ref|YP_001012307.1|	-	7.2e-07	28.4	0.0	3e-06	26.4	0.0	1.8	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.9	gi|124026987|ref|YP_001012307.1|	-	2.4e-05	24.2	0.0	3.3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|124026987|ref|YP_001012307.1|	-	0.0001	21.3	2.2	0.068	12.0	0.0	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|124026987|ref|YP_001012307.1|	-	0.039	14.3	0.1	16	5.9	0.0	2.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
SpecificRecomb	PF10136.4	gi|124026987|ref|YP_001012307.1|	-	0.09	10.7	0.0	0.13	10.2	0.0	1.2	1	0	0	1	1	1	0	Site-specific	recombinase
HI0933_like	PF03486.9	gi|124026987|ref|YP_001012307.1|	-	0.18	10.2	0.3	0.6	8.5	0.5	1.6	2	0	0	2	2	2	0	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|124026987|ref|YP_001012307.1|	-	0.37	9.5	4.3	0.4	9.4	1.5	1.9	2	0	0	2	2	2	0	FAD	binding	domain
Met_10	PF02475.11	gi|124026988|ref|YP_001012308.1|	-	1.8e-58	197.4	0.0	2.6e-58	196.9	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|124026988|ref|YP_001012308.1|	-	1.3e-07	31.6	0.0	2.9e-07	30.5	0.0	1.7	2	1	0	2	2	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|124026988|ref|YP_001012308.1|	-	2.9e-06	26.9	0.0	4.7e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
TRM	PF02005.11	gi|124026988|ref|YP_001012308.1|	-	7.4e-06	25.1	0.0	1.1e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.9	gi|124026988|ref|YP_001012308.1|	-	2.1e-05	23.9	0.0	0.00028	20.2	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|124026988|ref|YP_001012308.1|	-	4.2e-05	22.8	0.0	7.4e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.2	gi|124026988|ref|YP_001012308.1|	-	0.0014	19.1	0.0	0.0045	17.5	0.0	2.0	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_16	PF10294.4	gi|124026988|ref|YP_001012308.1|	-	0.0014	18.0	0.0	0.0045	16.4	0.0	1.7	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_31	PF13847.1	gi|124026988|ref|YP_001012308.1|	-	0.0099	15.4	0.0	0.018	14.6	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|124026988|ref|YP_001012308.1|	-	0.027	13.4	0.0	0.041	12.9	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
GCD14	PF08704.5	gi|124026988|ref|YP_001012308.1|	-	0.038	13.4	0.0	0.056	12.9	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Cons_hypoth95	PF03602.10	gi|124026988|ref|YP_001012308.1|	-	0.044	13.1	0.0	0.16	11.3	0.0	1.7	2	0	0	2	2	2	0	Conserved	hypothetical	protein	95
Med9	PF07544.8	gi|124026989|ref|YP_001012309.1|	-	0.019	14.6	2.6	0.11	12.2	1.7	2.1	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
MerR-DNA-bind	PF09278.6	gi|124026989|ref|YP_001012309.1|	-	0.058	13.8	5.7	0.1	12.9	4.0	1.4	1	0	0	1	1	1	0	MerR,	DNA	binding
Vir_act_alpha_C	PF10400.4	gi|124026989|ref|YP_001012309.1|	-	0.068	13.5	0.5	0.14	12.5	0.3	1.5	1	0	0	1	1	1	0	Virulence	activator	alpha	C-term
Lon_C	PF05362.8	gi|124026990|ref|YP_001012310.1|	-	8.6e-09	34.9	0.0	1.5e-08	34.2	0.0	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
UDG	PF03167.14	gi|124026991|ref|YP_001012311.1|	-	4.1e-41	139.9	0.1	5.3e-41	139.6	0.0	1.2	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
PNP_UDP_1	PF01048.15	gi|124026992|ref|YP_001012312.1|	-	2.8e-40	137.7	1.2	3.3e-40	137.5	0.9	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
Peptidase_S11	PF00768.15	gi|124026992|ref|YP_001012312.1|	-	0.19	10.9	0.0	0.28	10.4	0.0	1.2	1	0	0	1	1	1	0	D-alanyl-D-alanine	carboxypeptidase
DUF348	PF03990.9	gi|124026993|ref|YP_001012313.1|	-	0.00075	19.0	0.9	0.092	12.3	0.0	2.6	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF348)
Ub-Mut7C	PF14451.1	gi|124026993|ref|YP_001012313.1|	-	0.078	12.5	0.1	0.1	12.1	0.1	1.3	1	0	0	1	1	1	0	Mut7-C	ubiquitin
UTRA	PF07702.8	gi|124026993|ref|YP_001012313.1|	-	0.11	12.0	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	UTRA	domain
ATP_bind_3	PF01171.15	gi|124026994|ref|YP_001012314.1|	-	2.4e-15	56.4	0.0	7.2e-15	54.9	0.0	1.8	1	1	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|124026994|ref|YP_001012314.1|	-	1.6e-05	23.6	0.0	2.5e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
RecR	PF02132.10	gi|124026994|ref|YP_001012314.1|	-	0.0014	18.0	1.4	0.0014	18.0	1.0	3.0	3	0	0	3	3	3	1	RecR	protein
QueC	PF06508.8	gi|124026994|ref|YP_001012314.1|	-	0.0018	17.6	0.0	0.0061	15.8	0.0	1.9	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Usp	PF00582.21	gi|124026994|ref|YP_001012314.1|	-	0.046	13.9	0.1	0.096	12.8	0.1	1.6	1	0	0	1	1	1	0	Universal	stress	protein	family
ThiI	PF02568.9	gi|124026994|ref|YP_001012314.1|	-	0.13	11.6	0.1	0.32	10.4	0.0	1.6	2	0	0	2	2	2	0	Thiamine	biosynthesis	protein	(ThiI)
Pterin_bind	PF00809.17	gi|124026994|ref|YP_001012314.1|	-	0.14	11.4	0.0	0.31	10.3	0.0	1.5	1	0	0	1	1	1	0	Pterin	binding	enzyme
BPD_transp_2	PF02653.11	gi|124026996|ref|YP_001012316.1|	-	9.5e-30	103.4	47.5	1.5e-29	102.8	32.9	1.3	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|124026997|ref|YP_001012317.1|	-	9.9e-34	116.5	39.8	9.9e-34	116.5	27.6	2.0	2	0	0	2	2	2	2	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|124026998|ref|YP_001012318.1|	-	2.3e-45	154.2	0.0	2.3e-31	108.9	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|124026998|ref|YP_001012318.1|	-	3.4e-12	46.9	0.0	3.2e-05	24.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|124026998|ref|YP_001012318.1|	-	0.00031	20.1	0.1	0.0017	17.8	0.0	2.3	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|124026998|ref|YP_001012318.1|	-	0.0014	18.6	4.9	0.012	15.5	1.2	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|124026998|ref|YP_001012318.1|	-	0.0024	17.2	0.3	0.018	14.4	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|124026998|ref|YP_001012318.1|	-	0.0087	15.1	0.0	3.2	6.6	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_19	PF13245.1	gi|124026998|ref|YP_001012318.1|	-	0.039	13.7	4.7	0.66	9.7	0.0	3.6	3	0	0	3	3	3	0	Part	of	AAA	domain
NACHT	PF05729.7	gi|124026998|ref|YP_001012318.1|	-	0.04	13.5	0.1	0.98	9.0	0.0	2.7	3	0	0	3	3	3	0	NACHT	domain
AAA_23	PF13476.1	gi|124026998|ref|YP_001012318.1|	-	0.094	13.0	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|124026998|ref|YP_001012318.1|	-	0.1	11.8	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|124026998|ref|YP_001012318.1|	-	0.14	11.6	0.1	4.3	6.6	0.0	2.6	3	0	0	3	3	3	0	AAA-like	domain
AAA_22	PF13401.1	gi|124026998|ref|YP_001012318.1|	-	0.14	12.3	0.4	1.5	8.9	0.1	2.7	2	1	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|124026998|ref|YP_001012318.1|	-	0.23	9.8	0.0	0.32	9.4	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
Ribosomal_L13e	PF01294.13	gi|124026999|ref|YP_001012319.1|	-	1.1e-08	34.7	0.0	1.2e-08	34.6	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L13e
MBF1	PF08523.5	gi|124026999|ref|YP_001012319.1|	-	0.11	12.4	0.0	0.18	11.8	0.0	1.4	1	0	0	1	1	1	0	Multiprotein	bridging	factor	1
AsnC_trans_reg	PF01037.16	gi|124027000|ref|YP_001012320.1|	-	7.6e-15	54.3	0.1	1.3e-14	53.6	0.0	1.4	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|124027000|ref|YP_001012320.1|	-	3.4e-13	48.7	0.3	1.1e-12	47.1	0.2	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|124027000|ref|YP_001012320.1|	-	5.5e-11	41.8	1.5	7.7e-11	41.3	0.5	1.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|124027000|ref|YP_001012320.1|	-	3.6e-07	29.7	0.2	7.9e-07	28.6	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|124027000|ref|YP_001012320.1|	-	2.3e-06	27.2	0.2	4.9e-06	26.2	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|124027000|ref|YP_001012320.1|	-	7.5e-06	25.5	0.2	1.5e-05	24.5	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|124027000|ref|YP_001012320.1|	-	2.2e-05	24.0	0.1	3.9e-05	23.2	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|124027000|ref|YP_001012320.1|	-	6.2e-05	22.5	0.6	0.00013	21.4	0.4	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|124027000|ref|YP_001012320.1|	-	0.00028	20.3	0.1	0.00052	19.5	0.1	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_9	PF08221.6	gi|124027000|ref|YP_001012320.1|	-	0.00041	20.1	0.6	0.0016	18.2	0.1	2.0	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
TrmB	PF01978.14	gi|124027000|ref|YP_001012320.1|	-	0.00046	19.8	0.1	0.00085	18.9	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4_2	PF08281.7	gi|124027000|ref|YP_001012320.1|	-	0.0019	17.6	1.6	0.048	13.1	0.1	3.0	3	0	0	3	3	3	1	Sigma-70,	region	4
NUMOD1	PF07453.8	gi|124027000|ref|YP_001012320.1|	-	0.002	17.9	0.3	2.3	8.1	0.0	2.5	2	1	0	2	2	2	2	NUMOD1	domain
HTH_27	PF13463.1	gi|124027000|ref|YP_001012320.1|	-	0.0022	18.2	0.1	0.0051	17.1	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|124027000|ref|YP_001012320.1|	-	0.0035	16.9	0.2	0.046	13.3	0.2	2.5	1	1	1	2	2	2	1	Homeodomain-like	domain
FeoC	PF09012.5	gi|124027000|ref|YP_001012320.1|	-	0.0037	16.9	0.0	0.0066	16.1	0.0	1.4	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_40	PF14493.1	gi|124027000|ref|YP_001012320.1|	-	0.0037	17.4	0.0	0.042	14.0	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|124027000|ref|YP_001012320.1|	-	0.0094	15.5	0.2	0.038	13.5	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
DUF2089	PF09862.4	gi|124027000|ref|YP_001012320.1|	-	0.0097	15.6	0.0	0.019	14.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Penicillinase_R	PF03965.11	gi|124027000|ref|YP_001012320.1|	-	0.014	15.4	0.1	0.027	14.5	0.1	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
Rrf2	PF02082.15	gi|124027000|ref|YP_001012320.1|	-	0.019	15.0	0.5	0.28	11.3	0.1	2.4	2	1	0	2	2	2	0	Transcriptional	regulator
HTH_38	PF13936.1	gi|124027000|ref|YP_001012320.1|	-	0.021	14.3	0.0	0.043	13.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF742	PF05331.6	gi|124027000|ref|YP_001012320.1|	-	0.025	14.1	0.2	0.044	13.3	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_DeoR	PF08220.7	gi|124027000|ref|YP_001012320.1|	-	0.028	13.9	0.3	0.049	13.1	0.2	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|124027000|ref|YP_001012320.1|	-	0.038	13.1	0.1	0.1	11.8	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Mga	PF05043.8	gi|124027000|ref|YP_001012320.1|	-	0.045	14.0	0.1	0.1	12.8	0.0	1.6	2	0	0	2	2	1	0	Mga	helix-turn-helix	domain
B-block_TFIIIC	PF04182.7	gi|124027000|ref|YP_001012320.1|	-	0.056	13.3	0.0	0.082	12.7	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Fe_dep_repress	PF01325.14	gi|124027000|ref|YP_001012320.1|	-	0.064	13.2	0.1	0.14	12.0	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|124027000|ref|YP_001012320.1|	-	0.075	12.6	0.3	0.14	11.8	0.2	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_41	PF14502.1	gi|124027000|ref|YP_001012320.1|	-	0.099	12.2	0.1	1	9.0	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF211	PF02680.9	gi|124027001|ref|YP_001012321.1|	-	1.6e-37	127.1	1.0	1.7e-37	127.0	0.7	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
Sipho_tail	PF05709.6	gi|124027001|ref|YP_001012321.1|	-	0.038	13.1	0.0	0.043	12.9	0.0	1.0	1	0	0	1	1	1	0	Phage	tail	protein
tRNA_bind	PF01588.15	gi|124027002|ref|YP_001012322.1|	-	1.5e-24	85.6	0.0	1.7e-24	85.4	0.0	1.1	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
Saccharop_dh	PF03435.13	gi|124027003|ref|YP_001012323.1|	-	1.2e-35	123.2	0.0	1.4e-35	123.0	0.0	1.0	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
TrkA_N	PF02254.13	gi|124027003|ref|YP_001012323.1|	-	7e-07	29.2	0.0	1.7e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|124027003|ref|YP_001012323.1|	-	0.0014	17.8	0.0	0.0026	16.9	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|124027003|ref|YP_001012323.1|	-	0.0061	16.4	0.0	0.011	15.6	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|124027003|ref|YP_001012323.1|	-	0.017	15.5	0.0	0.061	13.7	0.0	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|124027003|ref|YP_001012323.1|	-	0.02	14.3	0.0	0.034	13.5	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.11	gi|124027003|ref|YP_001012323.1|	-	0.078	12.4	0.0	0.18	11.2	0.0	1.6	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
adh_short	PF00106.20	gi|124027003|ref|YP_001012323.1|	-	0.13	12.2	0.1	18	5.2	0.0	2.4	2	0	0	2	2	2	0	short	chain	dehydrogenase
Semialdhyde_dh	PF01118.19	gi|124027003|ref|YP_001012323.1|	-	0.14	12.4	0.0	0.29	11.4	0.0	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|124027003|ref|YP_001012323.1|	-	0.16	11.3	0.0	0.25	10.6	0.0	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
3HCDH_N	PF02737.13	gi|124027003|ref|YP_001012323.1|	-	0.17	11.5	0.0	0.29	10.7	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ABC_tran	PF00005.22	gi|124027004|ref|YP_001012324.1|	-	3.8e-26	92.0	0.0	5.3e-26	91.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027004|ref|YP_001012324.1|	-	1.3e-15	58.1	0.1	5.3e-13	49.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|124027004|ref|YP_001012324.1|	-	5.1e-05	23.4	0.3	0.0019	18.3	0.2	2.3	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|124027004|ref|YP_001012324.1|	-	0.00013	21.5	0.0	0.00019	20.9	0.0	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SMC_N	PF02463.14	gi|124027004|ref|YP_001012324.1|	-	0.00017	20.9	0.0	0.27	10.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|124027004|ref|YP_001012324.1|	-	0.00024	20.5	0.1	0.00047	19.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|124027004|ref|YP_001012324.1|	-	0.00099	19.4	0.0	0.0048	17.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124027004|ref|YP_001012324.1|	-	0.001	19.8	0.0	0.0017	19.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|124027004|ref|YP_001012324.1|	-	0.0017	18.7	0.2	0.0022	18.3	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124027004|ref|YP_001012324.1|	-	0.0061	16.7	0.0	0.011	15.8	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.1	gi|124027004|ref|YP_001012324.1|	-	0.0065	16.3	0.0	0.019	14.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|124027004|ref|YP_001012324.1|	-	0.0088	15.5	0.4	1.1	8.5	0.0	2.5	2	1	1	3	3	3	1	AAA-like	domain
MobB	PF03205.9	gi|124027004|ref|YP_001012324.1|	-	0.0088	15.7	0.1	0.015	14.9	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|124027004|ref|YP_001012324.1|	-	0.0097	15.9	0.1	0.017	15.1	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|124027004|ref|YP_001012324.1|	-	0.017	14.7	0.0	0.045	13.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|124027004|ref|YP_001012324.1|	-	0.043	13.5	0.1	0.097	12.4	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_5	PF07728.9	gi|124027004|ref|YP_001012324.1|	-	0.053	13.2	0.0	0.092	12.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|124027004|ref|YP_001012324.1|	-	0.099	12.5	0.0	0.17	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124027004|ref|YP_001012324.1|	-	0.12	12.0	0.0	0.23	11.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ABC2_membrane_3	PF12698.2	gi|124027005|ref|YP_001012325.1|	-	2.8e-22	79.2	18.2	3.5e-22	78.9	12.6	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|124027005|ref|YP_001012325.1|	-	2.8e-20	72.3	22.2	4.2e-20	71.7	15.4	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|124027005|ref|YP_001012325.1|	-	6.2e-17	61.5	4.6	9.3e-17	60.9	3.2	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|124027005|ref|YP_001012325.1|	-	5.1e-10	38.8	18.7	1.5e-09	37.3	9.7	2.7	2	1	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.1	gi|124027005|ref|YP_001012325.1|	-	0.001	18.4	19.6	0.0016	17.8	11.0	2.7	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
RbcS	PF12338.3	gi|124027005|ref|YP_001012325.1|	-	0.037	13.8	0.9	0.037	13.8	0.6	2.6	2	0	0	2	2	2	0	Ribulose-1,5-bisphosphate	carboxylase	small	subunit
SRP19	PF01922.12	gi|124027006|ref|YP_001012326.1|	-	4.5e-26	91.2	0.3	5.6e-26	90.9	0.2	1.1	1	0	0	1	1	1	1	SRP19	protein
Amidohydro_4	PF13147.1	gi|124027007|ref|YP_001012327.1|	-	1.8e-24	87.2	6.3	2.5e-24	86.7	4.4	1.1	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|124027007|ref|YP_001012327.1|	-	8.4e-19	68.3	0.0	3e-18	66.5	0.0	1.8	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|124027007|ref|YP_001012327.1|	-	3.8e-12	46.1	0.2	5.9e-08	32.3	0.0	2.5	2	1	1	3	3	3	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|124027007|ref|YP_001012327.1|	-	2.9e-11	42.9	0.0	6.4e-11	41.9	0.0	1.6	1	0	0	1	1	1	1	Amidohydrolase
D-aminoacyl_C	PF07908.7	gi|124027007|ref|YP_001012327.1|	-	0.036	13.3	0.0	0.11	11.7	0.0	1.8	2	0	0	2	2	2	0	D-aminoacylase,	C-terminal	region
DHODB_Fe-S_bind	PF10418.4	gi|124027008|ref|YP_001012328.1|	-	3.5e-07	29.5	6.9	5.6e-07	28.9	4.8	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
NAD_binding_1	PF00175.16	gi|124027008|ref|YP_001012328.1|	-	9.8e-06	26.1	0.0	1.6e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
PyrI	PF01948.13	gi|124027009|ref|YP_001012329.1|	-	1.7e-38	130.5	0.2	2.2e-38	130.1	0.1	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|124027009|ref|YP_001012329.1|	-	2.5e-20	71.6	0.1	3.8e-20	71.0	0.0	1.3	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
OTCace_N	PF02729.16	gi|124027010|ref|YP_001012330.1|	-	5.8e-44	149.1	0.0	8.6e-44	148.6	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|124027010|ref|YP_001012330.1|	-	5e-32	110.9	0.0	7.8e-32	110.3	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Pribosyltran	PF00156.22	gi|124027011|ref|YP_001012331.1|	-	2.4e-21	75.7	0.9	4.5e-21	74.8	0.6	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|124027011|ref|YP_001012331.1|	-	0.00011	21.5	0.1	0.055	12.7	0.0	2.1	1	1	1	2	2	2	2	Phosphoribosyl	transferase
UPRTase	PF14681.1	gi|124027011|ref|YP_001012331.1|	-	0.00021	20.5	0.1	0.00027	20.1	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyl_synth	PF14572.1	gi|124027011|ref|YP_001012331.1|	-	0.038	13.7	0.1	0.062	13.0	0.1	1.6	1	0	0	1	1	1	0	Phosphoribosyl	synthetase-associated	domain
Aconitase_2_N	PF06434.8	gi|124027011|ref|YP_001012331.1|	-	0.069	12.5	0.0	0.11	11.8	0.0	1.4	1	0	0	1	1	1	0	Aconitate	hydratase	2	N-terminus
PRTase_3	PF15610.1	gi|124027011|ref|YP_001012331.1|	-	0.11	11.3	0.0	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	PRTase	ComF-like
OMPdecase	PF00215.19	gi|124027012|ref|YP_001012332.1|	-	2.4e-28	99.0	0.0	2.9e-28	98.7	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
PALP	PF00291.20	gi|124027013|ref|YP_001012333.1|	-	1.2e-51	175.7	3.8	1.4e-51	175.5	2.7	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
AAA_19	PF13245.1	gi|124027013|ref|YP_001012333.1|	-	0.0095	15.6	6.0	0.11	12.2	0.1	2.8	2	0	0	2	2	2	2	Part	of	AAA	domain
CTP_synth_N	PF06418.9	gi|124027014|ref|YP_001012334.1|	-	2.3e-132	440.1	0.1	3e-132	439.8	0.0	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|124027014|ref|YP_001012334.1|	-	1.5e-43	148.5	0.0	2.4e-43	147.8	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|124027014|ref|YP_001012334.1|	-	4.7e-12	45.8	0.0	1.2e-11	44.5	0.0	1.6	2	0	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.18	gi|124027014|ref|YP_001012334.1|	-	5.4e-07	29.2	0.0	8e-07	28.6	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase_3	PF07685.9	gi|124027014|ref|YP_001012334.1|	-	0.15	11.6	0.0	0.32	10.5	0.0	1.6	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
MarR	PF01047.17	gi|124027015|ref|YP_001012335.1|	-	0.0021	17.7	0.1	1.3	8.7	0.0	2.1	2	0	0	2	2	2	2	MarR	family
FUR	PF01475.14	gi|124027016|ref|YP_001012336.1|	-	4.7e-15	55.5	0.0	4.9e-15	55.5	0.0	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
DUF4423	PF14394.1	gi|124027016|ref|YP_001012336.1|	-	0.0065	16.0	0.0	0.012	15.2	0.0	1.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
PadR	PF03551.9	gi|124027016|ref|YP_001012336.1|	-	0.014	15.1	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.1	gi|124027016|ref|YP_001012336.1|	-	0.023	14.1	0.0	0.035	13.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|124027016|ref|YP_001012336.1|	-	0.026	14.1	0.0	0.043	13.4	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_20	PF12840.2	gi|124027016|ref|YP_001012336.1|	-	0.027	14.2	0.0	0.052	13.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|124027016|ref|YP_001012336.1|	-	0.07	12.8	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|124027016|ref|YP_001012336.1|	-	0.11	12.2	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CBS	PF00571.23	gi|124027017|ref|YP_001012337.1|	-	1.6e-36	123.8	2.2	3.4e-17	61.9	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
HrcA_DNA-bdg	PF03444.10	gi|124027017|ref|YP_001012337.1|	-	5.4e-33	112.2	0.2	1.3e-32	111.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|124027017|ref|YP_001012337.1|	-	2e-09	37.4	0.1	4.8e-09	36.2	0.1	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|124027017|ref|YP_001012337.1|	-	0.00015	21.3	0.4	0.00043	19.8	0.3	1.9	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|124027017|ref|YP_001012337.1|	-	0.0049	16.5	0.1	0.011	15.4	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|124027017|ref|YP_001012337.1|	-	0.0058	15.9	2.6	0.078	12.3	0.7	3.0	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|124027017|ref|YP_001012337.1|	-	0.011	15.3	0.0	0.035	13.7	0.0	1.9	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|124027017|ref|YP_001012337.1|	-	0.011	15.4	0.4	0.034	13.8	0.0	2.1	3	0	0	3	3	2	0	MarR	family
HTH_27	PF13463.1	gi|124027017|ref|YP_001012337.1|	-	0.029	14.6	0.1	0.074	13.3	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|124027017|ref|YP_001012337.1|	-	0.053	13.4	0.3	0.11	12.4	0.2	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.1	gi|124027017|ref|YP_001012337.1|	-	0.063	12.9	0.0	0.63	9.7	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_38	PF13936.1	gi|124027017|ref|YP_001012337.1|	-	0.093	12.3	1.8	0.25	10.9	0.3	2.5	3	0	0	3	3	3	0	Helix-turn-helix	domain
Bactofilin	PF04519.8	gi|124027017|ref|YP_001012337.1|	-	0.57	10.2	4.5	0.79	9.7	0.3	2.5	2	1	0	2	2	2	0	Polymer-forming	cytoskeletal
PRC	PF05239.11	gi|124027017|ref|YP_001012337.1|	-	0.94	9.3	9.0	2.4	8.1	0.1	4.3	3	2	0	4	4	4	0	PRC-barrel	domain
NfeD	PF01957.13	gi|124027018|ref|YP_001012338.1|	-	1.9e-23	83.1	4.1	1.9e-23	83.1	2.9	3.1	3	0	0	3	3	3	1	NfeD-like	C-terminal,	partner-binding
CLP_protease	PF00574.18	gi|124027018|ref|YP_001012338.1|	-	1.8e-06	27.7	0.1	1.8e-06	27.7	0.1	2.6	2	1	1	3	3	3	1	Clp	protease
SDH_sah	PF01972.11	gi|124027018|ref|YP_001012338.1|	-	4e-05	22.5	0.6	6.3e-05	21.8	0.4	1.4	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
DUF751	PF05421.6	gi|124027019|ref|YP_001012339.1|	-	0.33	11.2	8.0	3.6	7.9	5.1	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF751)
HlyIII	PF03006.15	gi|124027019|ref|YP_001012339.1|	-	0.42	9.9	6.7	0.5	9.7	4.6	1.0	1	0	0	1	1	1	0	Haemolysin-III	related
Voltage_CLC	PF00654.15	gi|124027019|ref|YP_001012339.1|	-	0.49	9.3	7.0	0.88	8.5	4.8	1.5	1	1	0	1	1	1	0	Voltage	gated	chloride	channel
MFS_1	PF07690.11	gi|124027019|ref|YP_001012339.1|	-	1.3	7.6	10.6	1.6	7.3	7.4	1.1	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
DUF1129	PF06570.6	gi|124027019|ref|YP_001012339.1|	-	1.6	8.0	5.9	2.3	7.5	4.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
TerC	PF03741.11	gi|124027019|ref|YP_001012339.1|	-	6.7	6.1	11.5	0.51	9.7	1.1	2.0	1	1	1	2	2	2	0	Integral	membrane	protein	TerC	family
BRI3BP	PF14965.1	gi|124027019|ref|YP_001012339.1|	-	9.9	5.4	10.1	12	5.1	7.0	1.2	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
RHH_1	PF01402.16	gi|124027020|ref|YP_001012340.1|	-	9.6e-11	41.1	0.3	1.2e-10	40.7	0.2	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|124027020|ref|YP_001012340.1|	-	0.00079	19.5	0.0	0.00087	19.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
DUF2191	PF09957.4	gi|124027020|ref|YP_001012340.1|	-	0.057	13.2	0.0	0.089	12.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
ATP_bind_1	PF03029.12	gi|124027022|ref|YP_001012342.1|	-	2.1e-54	184.6	0.0	2.4e-54	184.3	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_22	PF13401.1	gi|124027022|ref|YP_001012342.1|	-	0.0005	20.2	0.0	0.011	15.9	0.0	2.5	2	2	0	3	3	3	1	AAA	domain
AAA_16	PF13191.1	gi|124027022|ref|YP_001012342.1|	-	0.00081	19.4	0.0	0.0014	18.6	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Dynamin_N	PF00350.18	gi|124027022|ref|YP_001012342.1|	-	0.0024	17.7	0.2	0.13	12.1	0.0	2.2	2	0	0	2	2	2	1	Dynamin	family
AAA_29	PF13555.1	gi|124027022|ref|YP_001012342.1|	-	0.0029	17.0	0.0	0.0062	16.0	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|124027022|ref|YP_001012342.1|	-	0.0061	16.5	0.0	0.043	13.7	0.0	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_33	PF13671.1	gi|124027022|ref|YP_001012342.1|	-	0.012	15.4	0.0	0.018	14.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
FeoB_N	PF02421.13	gi|124027022|ref|YP_001012342.1|	-	0.014	14.6	0.0	0.14	11.3	0.0	2.0	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
IstB_IS21	PF01695.12	gi|124027022|ref|YP_001012342.1|	-	0.024	14.0	0.0	0.044	13.2	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
SMC_N	PF02463.14	gi|124027022|ref|YP_001012342.1|	-	0.028	13.6	0.0	0.045	12.9	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_17	PF13207.1	gi|124027022|ref|YP_001012342.1|	-	0.032	15.0	0.0	0.051	14.3	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124027022|ref|YP_001012342.1|	-	0.037	13.6	0.0	0.096	12.3	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
AAA_30	PF13604.1	gi|124027022|ref|YP_001012342.1|	-	0.039	13.5	0.0	0.086	12.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|124027022|ref|YP_001012342.1|	-	0.051	12.3	0.0	0.079	11.7	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
Miro	PF08477.8	gi|124027022|ref|YP_001012342.1|	-	0.056	13.9	0.0	6.4	7.2	0.0	2.2	2	0	0	2	2	2	0	Miro-like	protein
PIN	PF01850.16	gi|124027022|ref|YP_001012342.1|	-	0.068	13.5	0.0	0.18	12.1	0.0	1.7	2	0	0	2	2	2	0	PIN	domain
DUF258	PF03193.11	gi|124027022|ref|YP_001012342.1|	-	0.1	11.7	0.0	2	7.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
cobW	PF02492.14	gi|124027022|ref|YP_001012342.1|	-	0.15	11.4	0.0	5.2	6.4	0.0	2.3	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF488	PF04343.8	gi|124027024|ref|YP_001012344.1|	-	7.9e-20	71.4	0.1	6.2e-18	65.3	0.0	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF488
Aldolase_2	PF10120.4	gi|124027025|ref|YP_001012345.1|	-	2.7e-45	153.8	0.1	4.4e-45	153.1	0.1	1.4	1	0	0	1	1	1	1	Putative	aldolase
HTH_23	PF13384.1	gi|124027025|ref|YP_001012345.1|	-	1.5e-06	27.6	2.4	1.8e-05	24.2	0.2	2.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|124027025|ref|YP_001012345.1|	-	2.3e-05	23.8	0.4	5.4e-05	22.6	0.1	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|124027025|ref|YP_001012345.1|	-	6.8e-05	22.6	0.0	0.00019	21.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|124027025|ref|YP_001012345.1|	-	0.001	19.2	0.8	0.0027	17.8	0.6	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|124027025|ref|YP_001012345.1|	-	0.007	16.1	0.1	0.055	13.3	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix
HTH_24	PF13412.1	gi|124027025|ref|YP_001012345.1|	-	0.011	15.1	0.2	0.074	12.4	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|124027025|ref|YP_001012345.1|	-	0.029	14.0	0.4	0.1	12.2	0.2	1.9	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.7	gi|124027025|ref|YP_001012345.1|	-	0.033	13.6	0.0	0.1	12.0	0.0	1.9	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_5	PF01022.15	gi|124027025|ref|YP_001012345.1|	-	0.036	13.7	0.0	0.087	12.5	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Nitro_FeMo-Co	PF02579.12	gi|124027025|ref|YP_001012345.1|	-	0.052	13.6	0.0	0.1	12.6	0.0	1.5	1	0	0	1	1	1	0	Dinitrogenase	iron-molybdenum	cofactor
HTH_29	PF13551.1	gi|124027025|ref|YP_001012345.1|	-	0.084	13.0	0.2	0.48	10.5	0.1	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_Tnp_4	PF13613.1	gi|124027025|ref|YP_001012345.1|	-	0.13	11.8	0.1	0.34	10.4	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
Peptidase_M20	PF01546.23	gi|124027026|ref|YP_001012346.1|	-	5e-27	94.6	0.0	6.3e-27	94.3	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|124027026|ref|YP_001012346.1|	-	5.8e-11	42.1	0.0	1e-10	41.3	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|124027026|ref|YP_001012346.1|	-	6.5e-06	25.9	0.0	1.8e-05	24.5	0.0	1.8	2	1	0	2	2	2	1	Peptidase	family	M28
Peptidase_M42	PF05343.9	gi|124027026|ref|YP_001012346.1|	-	0.022	13.5	0.0	3	6.5	0.0	2.9	3	0	0	3	3	3	0	M42	glutamyl	aminopeptidase
TP_methylase	PF00590.15	gi|124027028|ref|YP_001012348.1|	-	3e-25	89.1	2.2	3.6e-25	88.9	1.5	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF4350	PF14258.1	gi|124027028|ref|YP_001012348.1|	-	0.09	12.9	0.1	2.2	8.5	0.0	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
OMPdecase	PF00215.19	gi|124027029|ref|YP_001012349.1|	-	1.9e-22	79.7	0.3	2.7e-22	79.2	0.2	1.3	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
PEP_mutase	PF13714.1	gi|124027029|ref|YP_001012349.1|	-	0.0023	17.1	2.9	0.0031	16.7	0.2	2.2	1	1	2	3	3	3	1	Phosphoenolpyruvate	phosphomutase
DUF561	PF04481.7	gi|124027029|ref|YP_001012349.1|	-	0.013	14.5	2.2	0.015	14.2	0.5	1.8	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
Ribul_P_3_epim	PF00834.14	gi|124027029|ref|YP_001012349.1|	-	0.026	13.6	0.5	0.054	12.5	0.4	1.6	1	1	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
NanE	PF04131.9	gi|124027029|ref|YP_001012349.1|	-	0.028	13.3	1.7	0.12	11.3	1.1	2.3	1	1	0	1	1	1	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
ThiG	PF05690.9	gi|124027029|ref|YP_001012349.1|	-	0.044	12.8	6.0	0.019	14.0	2.6	1.6	1	1	1	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
Dicistro_VP4	PF11492.3	gi|124027029|ref|YP_001012349.1|	-	0.098	12.6	1.3	1.2	9.1	0.1	2.5	2	0	0	2	2	2	0	Cricket	paralysis	virus,	VP4
MoeA_N	PF03453.12	gi|124027030|ref|YP_001012350.1|	-	1.4e-40	138.3	1.1	2.7e-40	137.3	0.1	2.0	3	0	0	3	3	3	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|124027030|ref|YP_001012350.1|	-	9.7e-17	60.7	0.0	1.7e-16	59.9	0.0	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|124027030|ref|YP_001012350.1|	-	2.1e-05	24.3	0.1	0.0001	22.1	0.1	2.3	1	1	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
AAA_17	PF13207.1	gi|124027031|ref|YP_001012351.1|	-	0.00061	20.6	0.0	0.05	14.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|124027031|ref|YP_001012351.1|	-	0.00095	18.8	0.0	0.0017	18.0	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|124027031|ref|YP_001012351.1|	-	0.005	16.0	0.0	0.0084	15.2	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.1	gi|124027031|ref|YP_001012351.1|	-	0.035	13.9	0.0	0.089	12.6	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124027031|ref|YP_001012351.1|	-	0.041	13.4	0.0	0.073	12.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|124027031|ref|YP_001012351.1|	-	0.042	13.8	0.0	0.26	11.2	0.0	2.2	1	1	0	2	2	2	0	50S	ribosome-binding	GTPase
CoaE	PF01121.15	gi|124027031|ref|YP_001012351.1|	-	0.077	12.3	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	Dephospho-CoA	kinase
Amidase_3	PF01520.13	gi|124027031|ref|YP_001012351.1|	-	0.093	12.5	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	N-acetylmuramoyl-L-alanine	amidase
ThiS	PF02597.15	gi|124027033|ref|YP_001012353.1|	-	9.8e-17	61.1	0.1	1.1e-16	61.0	0.1	1.0	1	0	0	1	1	1	1	ThiS	family
Urm1	PF09138.6	gi|124027033|ref|YP_001012353.1|	-	0.00059	19.9	0.0	0.00065	19.7	0.0	1.2	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
TGS	PF02824.16	gi|124027033|ref|YP_001012353.1|	-	0.084	12.7	0.0	4.5	7.1	0.0	2.2	2	0	0	2	2	2	0	TGS	domain
Radical_SAM	PF04055.16	gi|124027035|ref|YP_001012355.1|	-	6.2e-20	72.0	0.0	1.1e-19	71.1	0.0	1.4	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|124027035|ref|YP_001012355.1|	-	9.5e-10	38.5	0.1	1.7e-09	37.7	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124027035|ref|YP_001012355.1|	-	1.6e-09	37.9	0.0	2.4e-09	37.4	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Mu-like_Com	PF10122.4	gi|124027035|ref|YP_001012355.1|	-	0.25	10.4	2.2	0.68	9.0	0.0	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
AAA_18	PF13238.1	gi|124027036|ref|YP_001012356.1|	-	8.5e-09	35.8	0.0	3.7e-08	33.7	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027036|ref|YP_001012356.1|	-	4.7e-08	33.8	0.1	5.8e-07	30.3	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124027036|ref|YP_001012356.1|	-	1.7e-06	27.9	0.0	4e-06	26.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|124027036|ref|YP_001012356.1|	-	2.3e-06	27.6	0.6	3.4e-05	23.8	0.4	2.5	1	1	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.12	gi|124027036|ref|YP_001012356.1|	-	0.00039	19.8	0.0	0.033	13.5	0.0	2.4	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_16	PF13191.1	gi|124027036|ref|YP_001012356.1|	-	0.0059	16.6	0.1	0.011	15.7	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
MobB	PF03205.9	gi|124027036|ref|YP_001012356.1|	-	0.02	14.5	0.0	0.041	13.5	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.17	gi|124027036|ref|YP_001012356.1|	-	0.046	13.1	0.0	0.073	12.5	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.1	gi|124027036|ref|YP_001012356.1|	-	0.067	13.3	0.0	0.17	12.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
KTI12	PF08433.5	gi|124027036|ref|YP_001012356.1|	-	0.11	11.6	0.0	0.26	10.4	0.0	1.6	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
ABC_tran	PF00005.22	gi|124027036|ref|YP_001012356.1|	-	0.13	12.5	0.0	0.27	11.5	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
NRDD	PF13597.1	gi|124027037|ref|YP_001012357.1|	-	3.3e-157	523.8	0.0	4e-157	523.6	0.0	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
vATP-synt_E	PF01991.13	gi|124027037|ref|YP_001012357.1|	-	0.056	12.7	0.0	0.094	11.9	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
zf-ribbon_3	PF13248.1	gi|124027037|ref|YP_001012357.1|	-	0.21	10.8	3.1	0.54	9.5	2.2	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027037|ref|YP_001012357.1|	-	0.39	10.2	1.3	1.1	8.8	0.9	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|124027037|ref|YP_001012357.1|	-	4	7.3	5.5	7.1	6.5	0.2	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124027037|ref|YP_001012357.1|	-	4.2	6.9	6.2	2.3	7.8	0.5	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
CarboxypepD_reg	PF13620.1	gi|124027039|ref|YP_001012359.1|	-	0.00011	22.2	0.5	0.002	18.1	0.1	3.2	3	0	0	3	3	3	1	Carboxypeptidase	regulatory-like	domain
DUF4394	PF14339.1	gi|124027039|ref|YP_001012359.1|	-	0.0053	16.0	0.1	0.15	11.3	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4394)
Big_1	PF02369.11	gi|124027039|ref|YP_001012359.1|	-	0.0098	15.7	0.1	0.053	13.4	0.0	2.3	1	0	0	1	1	1	1	Bacterial	Ig-like	domain	(group	1)
TPR_11	PF13414.1	gi|124027040|ref|YP_001012360.1|	-	0.0039	16.8	6.1	0.033	13.8	2.4	3.5	3	0	0	3	3	3	1	TPR	repeat
TPR_16	PF13432.1	gi|124027040|ref|YP_001012360.1|	-	0.017	15.8	14.1	1.8	9.3	1.3	4.9	4	1	1	5	5	5	0	Tetratricopeptide	repeat
TPR_4	PF07721.9	gi|124027040|ref|YP_001012360.1|	-	0.13	12.7	2.8	25	5.6	0.0	4.3	2	1	1	3	3	3	0	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|124027040|ref|YP_001012360.1|	-	0.22	11.1	3.8	0.76	9.4	0.4	3.1	1	1	1	2	2	2	0	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|124027040|ref|YP_001012360.1|	-	1.4	8.9	5.1	4	7.4	0.9	3.8	3	1	0	3	3	3	0	Tetratricopeptide	repeat
Condensin2nSMC	PF12422.3	gi|124027040|ref|YP_001012360.1|	-	2.2	8.0	9.0	0.12	12.1	0.6	2.5	2	1	0	2	2	2	0	Condensin	II	non	structural	maintenance	of	chromosomes	subunit
TPR_14	PF13428.1	gi|124027040|ref|YP_001012360.1|	-	9.7	7.1	16.1	15	6.5	2.0	5.2	4	2	1	5	5	5	0	Tetratricopeptide	repeat
Phageshock_PspG	PF09583.5	gi|124027041|ref|YP_001012361.1|	-	0.081	12.9	5.3	0.18	11.8	3.7	1.6	1	0	0	1	1	1	0	Phage	shock	protein	G	(Phageshock_PspG)
CBS	PF00571.23	gi|124027042|ref|YP_001012362.1|	-	3.6e-69	228.3	31.0	2e-14	53.0	1.0	7.8	8	0	0	8	8	8	7	CBS	domain
DUF3659	PF12396.3	gi|124027042|ref|YP_001012362.1|	-	2.2	8.0	6.8	17	5.2	0.2	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3659)
bPH_5	PF10882.3	gi|124027043|ref|YP_001012363.1|	-	0.015	15.1	0.0	0.027	14.2	0.0	1.5	2	0	0	2	2	2	0	Bacterial	PH	domain
Spore_YunB	PF09560.5	gi|124027043|ref|YP_001012363.1|	-	0.031	13.9	0.0	0.06	13.0	0.0	1.4	1	0	0	1	1	1	0	Sporulation	protein	YunB	(Spo_YunB)
DUF2892	PF11127.3	gi|124027044|ref|YP_001012364.1|	-	1.1	9.1	6.7	2.7	7.8	4.6	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
DUF444	PF04285.7	gi|124027045|ref|YP_001012365.1|	-	0.094	11.3	0.0	0.094	11.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF444)
PIN	PF01850.16	gi|124027046|ref|YP_001012366.1|	-	5.3e-06	26.7	0.3	5.9e-06	26.6	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
NTP_transf_3	PF12804.2	gi|124027047|ref|YP_001012367.1|	-	5.9e-17	62.2	0.4	2.4e-16	60.2	0.3	1.9	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
NTP_transferase	PF00483.18	gi|124027047|ref|YP_001012367.1|	-	0.00019	20.8	0.0	0.00029	20.2	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
IspD	PF01128.14	gi|124027047|ref|YP_001012367.1|	-	0.041	13.3	0.0	0.061	12.8	0.0	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CDP-OH_P_transf	PF01066.16	gi|124027048|ref|YP_001012368.1|	-	7e-15	55.1	3.7	1.9e-14	53.7	2.6	1.7	1	0	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
ATP-grasp_5	PF13549.1	gi|124027049|ref|YP_001012369.1|	-	2.5e-84	281.9	0.5	2.8e-84	281.7	0.4	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.5	gi|124027049|ref|YP_001012369.1|	-	0.0026	17.1	1.4	0.0076	15.6	0.2	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|124027049|ref|YP_001012369.1|	-	0.0096	15.2	0.1	0.039	13.2	0.1	1.9	1	1	1	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.1	gi|124027049|ref|YP_001012369.1|	-	0.013	15.2	0.0	0.021	14.5	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
RimK	PF08443.6	gi|124027049|ref|YP_001012369.1|	-	0.018	14.5	0.0	0.036	13.5	0.0	1.6	2	0	0	2	2	2	0	RimK-like	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|124027049|ref|YP_001012369.1|	-	0.059	12.7	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain
Malic_M	PF03949.10	gi|124027050|ref|YP_001012370.1|	-	3.7e-65	220.0	0.1	4.9e-65	219.6	0.0	1.1	1	0	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|124027050|ref|YP_001012370.1|	-	1e-20	74.0	0.1	1.6e-14	53.8	0.1	3.7	2	1	1	3	3	3	2	Malic	enzyme,	N-terminal	domain
DUF416	PF04222.7	gi|124027050|ref|YP_001012370.1|	-	0.029	13.5	0.1	0.045	12.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF416)
F420_oxidored	PF03807.12	gi|124027050|ref|YP_001012370.1|	-	0.051	14.0	2.0	0.12	12.7	0.0	2.4	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ELFV_dehydrog	PF00208.16	gi|124027050|ref|YP_001012370.1|	-	0.087	12.3	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Sec5	PF15469.1	gi|124027050|ref|YP_001012370.1|	-	0.089	12.5	0.6	0.14	11.8	0.4	1.2	1	0	0	1	1	1	0	Exocyst	complex	component	Sec5
FAD_binding_2	PF00890.19	gi|124027051|ref|YP_001012371.1|	-	5.3e-114	381.2	0.2	6.5e-114	381.0	0.1	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|124027051|ref|YP_001012371.1|	-	7.3e-44	148.7	0.2	1.1e-43	148.1	0.1	1.3	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|124027051|ref|YP_001012371.1|	-	9.5e-06	25.6	1.8	0.0034	17.2	0.1	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|124027051|ref|YP_001012371.1|	-	8.1e-05	21.6	0.8	0.00034	19.6	0.1	2.1	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|124027051|ref|YP_001012371.1|	-	0.001	18.2	0.5	0.059	12.4	0.1	2.6	3	0	0	3	3	3	1	Thi4	family
HI0933_like	PF03486.9	gi|124027051|ref|YP_001012371.1|	-	0.01	14.3	0.5	1.5	7.2	0.1	2.2	2	0	0	2	2	2	0	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|124027051|ref|YP_001012371.1|	-	0.018	13.9	0.1	0.036	13.0	0.1	1.5	1	0	0	1	1	1	0	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|124027051|ref|YP_001012371.1|	-	0.057	13.4	0.2	0.24	11.4	0.1	2.1	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|124027051|ref|YP_001012371.1|	-	0.063	12.3	0.2	0.11	11.5	0.1	1.4	1	0	0	1	1	1	0	FAD	binding	domain
GIDA	PF01134.17	gi|124027051|ref|YP_001012371.1|	-	0.21	10.4	4.1	0.11	11.3	0.2	2.3	3	0	0	3	3	3	0	Glucose	inhibited	division	protein	A
Sdh_cyt	PF01127.17	gi|124027052|ref|YP_001012372.1|	-	4.4e-17	62.0	1.9	6.1e-17	61.5	1.0	1.5	1	1	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
TrbC	PF04956.8	gi|124027052|ref|YP_001012372.1|	-	0.0053	16.7	5.3	0.0076	16.2	0.0	2.1	2	0	0	2	2	2	1	TrbC/VIRB2	family
DUF4006	PF13179.1	gi|124027052|ref|YP_001012372.1|	-	0.0055	16.2	1.2	0.012	15.1	0.0	2.1	2	0	0	2	2	2	1	Family	of	unknown	function	(DUF4006)
Ferric_reduct	PF01794.14	gi|124027052|ref|YP_001012372.1|	-	0.015	15.3	3.1	0.028	14.5	2.1	1.6	1	1	0	1	1	1	0	Ferric	reductase	like	transmembrane	component
zf-DHHC	PF01529.15	gi|124027052|ref|YP_001012372.1|	-	0.1	11.9	0.1	0.14	11.5	0.1	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Cytochrom_B_N	PF00033.14	gi|124027052|ref|YP_001012372.1|	-	0.33	10.2	6.5	3.8	6.8	4.5	2.2	1	1	0	1	1	1	0	Cytochrome	b(N-terminal)/b6/petB
PepSY_TM_2	PF13703.1	gi|124027052|ref|YP_001012372.1|	-	0.45	10.7	3.8	1.7	8.8	0.0	2.4	2	1	0	2	2	2	0	PepSY-associated	TM	helix
Ni_hydr_CYTB	PF01292.15	gi|124027052|ref|YP_001012372.1|	-	0.75	9.1	4.7	3.5	6.9	3.2	1.9	1	1	0	1	1	1	0	Prokaryotic	cytochrome	b561
Sdh_cyt	PF01127.17	gi|124027053|ref|YP_001012373.1|	-	2.8e-10	40.0	5.0	4e-10	39.5	3.5	1.2	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
UPF0370	PF13980.1	gi|124027053|ref|YP_001012373.1|	-	0.043	13.6	0.4	0.043	13.6	0.3	1.9	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0370)
Tetraspannin	PF00335.15	gi|124027053|ref|YP_001012373.1|	-	0.41	9.8	4.2	0.54	9.4	2.9	1.2	1	0	0	1	1	1	0	Tetraspanin	family
DUF2427	PF10348.4	gi|124027053|ref|YP_001012373.1|	-	2.2	7.9	5.3	2.5	7.7	1.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2427)
PsbN	PF02468.10	gi|124027053|ref|YP_001012373.1|	-	4	7.1	4.9	1	9.0	0.4	2.1	2	0	0	2	2	2	0	Photosystem	II	reaction	centre	N	protein	(psbN)
DUF805	PF05656.9	gi|124027053|ref|YP_001012373.1|	-	6.3	6.6	12.4	3.3	7.5	4.4	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF805)
Lig_chan	PF00060.21	gi|124027053|ref|YP_001012373.1|	-	7.9	6.1	7.1	1.8	8.2	2.1	1.9	1	1	1	2	2	2	0	Ligand-gated	ion	channel
Spore_YabQ	PF09578.5	gi|124027053|ref|YP_001012373.1|	-	8	6.4	11.1	1	9.3	4.3	2.0	2	1	0	2	2	2	0	Spore	cortex	protein	YabQ	(Spore_YabQ)
Fer2_3	PF13085.1	gi|124027054|ref|YP_001012374.1|	-	6.3e-38	128.9	0.0	1.4e-37	127.8	0.0	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_18	PF13746.1	gi|124027054|ref|YP_001012374.1|	-	3.8e-08	33.6	7.4	1.6e-06	28.3	1.3	2.6	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124027054|ref|YP_001012374.1|	-	3e-07	30.3	4.8	3e-07	30.3	3.4	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124027054|ref|YP_001012374.1|	-	3.7e-07	30.3	12.2	4.6e-06	26.8	2.8	2.2	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124027054|ref|YP_001012374.1|	-	5.6e-06	26.0	11.4	1.6e-05	24.6	5.2	3.0	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124027054|ref|YP_001012374.1|	-	7.5e-06	25.3	1.6	7.5e-06	25.3	1.1	3.7	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|124027054|ref|YP_001012374.1|	-	2.1e-05	24.8	22.9	7.2e-05	23.0	6.7	2.7	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124027054|ref|YP_001012374.1|	-	3.2e-05	23.7	3.1	0.0045	16.8	0.1	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027054|ref|YP_001012374.1|	-	6e-05	22.7	1.5	6e-05	22.7	1.1	2.9	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|124027054|ref|YP_001012374.1|	-	0.00011	22.3	16.3	0.0022	18.2	5.8	2.5	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer2	PF00111.22	gi|124027054|ref|YP_001012374.1|	-	0.00037	20.1	0.3	0.00037	20.1	0.2	2.3	3	0	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_2	PF12797.2	gi|124027054|ref|YP_001012374.1|	-	0.00048	19.8	1.1	0.00048	19.8	0.8	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|124027054|ref|YP_001012374.1|	-	0.003	17.7	1.2	0.003	17.7	0.8	3.4	3	1	0	3	3	3	1	4Fe-4S	binding	domain
Fer2_4	PF13510.1	gi|124027054|ref|YP_001012374.1|	-	0.063	13.1	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_20	PF14691.1	gi|124027054|ref|YP_001012374.1|	-	0.07	12.7	5.5	2.4	7.8	0.2	2.3	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Acetone_carb_G	PF08882.6	gi|124027054|ref|YP_001012374.1|	-	0.078	13.0	1.7	1.2	9.1	0.5	2.6	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
Fer4_16	PF13484.1	gi|124027054|ref|YP_001012374.1|	-	2.4	8.9	14.2	0.36	11.6	5.5	2.9	3	1	0	3	3	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|124027054|ref|YP_001012374.1|	-	7	7.4	29.3	0.28	11.8	4.6	3.1	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fumerase_C	PF05683.7	gi|124027055|ref|YP_001012375.1|	-	1.6e-60	203.8	0.0	1.9e-60	203.5	0.0	1.0	1	0	0	1	1	1	1	Fumarase	C-terminus
HEM4	PF02602.10	gi|124027055|ref|YP_001012375.1|	-	0.018	14.2	0.0	2.4	7.3	0.0	2.5	2	1	0	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
Fumerase	PF05681.9	gi|124027056|ref|YP_001012376.1|	-	1.5e-89	299.7	0.0	1.7e-89	299.5	0.0	1.0	1	0	0	1	1	1	1	Fumarate	hydratase	(Fumerase)
SAM_adeno_trans	PF01887.11	gi|124027057|ref|YP_001012377.1|	-	7e-83	277.6	0.0	7.9e-83	277.4	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
MarR_2	PF12802.2	gi|124027058|ref|YP_001012378.1|	-	0.0046	16.6	0.1	0.0081	15.8	0.1	1.4	1	0	0	1	1	1	1	MarR	family
FeoC	PF09012.5	gi|124027058|ref|YP_001012378.1|	-	0.03	14.0	0.0	0.037	13.7	0.0	1.2	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_IclR	PF09339.5	gi|124027058|ref|YP_001012378.1|	-	0.088	12.4	0.0	0.19	11.3	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_13	PF11972.3	gi|124027058|ref|YP_001012378.1|	-	0.12	12.2	0.2	0.3	10.9	0.1	1.6	1	1	1	2	2	2	0	HTH	DNA	binding	domain
Ribosomal_S25	PF03297.10	gi|124027058|ref|YP_001012378.1|	-	0.15	12.1	0.0	0.17	11.9	0.0	1.1	1	0	0	1	1	1	0	S25	ribosomal	protein
FeoB_N	PF02421.13	gi|124027059|ref|YP_001012379.1|	-	7e-57	191.0	0.2	1.1e-56	190.4	0.1	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.9	gi|124027059|ref|YP_001012379.1|	-	2.8e-30	104.4	16.3	9.7e-19	67.2	1.9	3.0	2	0	0	2	2	2	2	Nucleoside	recognition
MMR_HSR1	PF01926.18	gi|124027059|ref|YP_001012379.1|	-	1.9e-17	63.2	0.1	3.9e-17	62.2	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_C	PF07664.7	gi|124027059|ref|YP_001012379.1|	-	6.9e-14	51.0	1.4	2.7e-13	49.0	1.0	2.1	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B	C	terminus
GTP_EFTU	PF00009.22	gi|124027059|ref|YP_001012379.1|	-	5.1e-08	32.5	1.4	2.2e-06	27.2	1.0	2.3	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
PduV-EutP	PF10662.4	gi|124027059|ref|YP_001012379.1|	-	0.00012	21.5	0.1	0.00042	19.8	0.0	1.9	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.5	gi|124027059|ref|YP_001012379.1|	-	0.0024	17.1	0.0	0.0046	16.1	0.0	1.4	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Ras	PF00071.17	gi|124027059|ref|YP_001012379.1|	-	0.0053	16.1	0.0	0.063	12.6	0.0	2.1	1	1	0	1	1	1	1	Ras	family
AIG1	PF04548.11	gi|124027059|ref|YP_001012379.1|	-	0.007	15.5	0.0	0.011	14.7	0.0	1.2	1	0	0	1	1	1	1	AIG1	family
Miro	PF08477.8	gi|124027059|ref|YP_001012379.1|	-	0.01	16.3	0.0	0.018	15.5	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
Dynamin_N	PF00350.18	gi|124027059|ref|YP_001012379.1|	-	0.011	15.5	0.2	1.3	8.8	0.0	2.3	1	1	1	2	2	2	0	Dynamin	family
DUF258	PF03193.11	gi|124027059|ref|YP_001012379.1|	-	0.02	14.1	0.1	0.033	13.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ABC_tran	PF00005.22	gi|124027059|ref|YP_001012379.1|	-	0.045	14.0	0.1	0.26	11.5	0.0	2.0	2	0	0	2	2	2	0	ABC	transporter
AAA_22	PF13401.1	gi|124027059|ref|YP_001012379.1|	-	0.05	13.7	0.0	0.11	12.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|124027059|ref|YP_001012379.1|	-	0.07	11.8	0.2	4.6	5.9	0.1	2.3	2	0	0	2	2	2	0	ArgK	protein
AAA_17	PF13207.1	gi|124027059|ref|YP_001012379.1|	-	0.076	13.8	0.3	10	6.9	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
Arf	PF00025.16	gi|124027059|ref|YP_001012379.1|	-	0.085	12.0	0.3	0.54	9.4	0.2	2.0	1	1	0	1	1	1	0	ADP-ribosylation	factor	family
6PF2K	PF01591.13	gi|124027059|ref|YP_001012379.1|	-	0.26	10.3	0.0	0.39	9.7	0.0	1.2	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
Fe_dep_repr_C	PF02742.10	gi|124027060|ref|YP_001012380.1|	-	2.3e-23	81.6	0.3	7.2e-23	80.0	0.0	1.9	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|124027060|ref|YP_001012380.1|	-	1.6e-19	69.5	0.8	3e-19	68.7	0.6	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|124027060|ref|YP_001012380.1|	-	1.2e-07	31.3	0.0	2.4e-07	30.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
FeoA	PF04023.9	gi|124027060|ref|YP_001012380.1|	-	3.4e-07	30.1	0.4	7.9e-05	22.5	0.1	2.3	2	0	0	2	2	2	1	FeoA	domain
MarR	PF01047.17	gi|124027060|ref|YP_001012380.1|	-	7e-07	28.8	0.0	1.4e-06	27.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|124027060|ref|YP_001012380.1|	-	4.7e-05	22.8	0.7	0.00026	20.5	0.1	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|124027060|ref|YP_001012380.1|	-	8e-05	22.2	0.1	0.00023	20.7	0.1	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|124027060|ref|YP_001012380.1|	-	0.00025	20.3	0.2	0.0013	18.1	0.0	2.2	2	1	0	2	2	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|124027060|ref|YP_001012380.1|	-	0.0004	20.6	0.1	0.00097	19.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|124027060|ref|YP_001012380.1|	-	0.00069	18.9	0.1	0.0021	17.3	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|124027060|ref|YP_001012380.1|	-	0.0028	17.3	0.0	0.0063	16.2	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|124027060|ref|YP_001012380.1|	-	0.0054	16.3	0.0	0.02	14.5	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
Rrf2	PF02082.15	gi|124027060|ref|YP_001012380.1|	-	0.0058	16.7	0.1	0.015	15.3	0.1	1.7	2	1	0	2	2	1	1	Transcriptional	regulator
EAP30	PF04157.11	gi|124027060|ref|YP_001012380.1|	-	0.014	14.6	0.0	0.02	14.0	0.0	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_36	PF13730.1	gi|124027060|ref|YP_001012380.1|	-	0.018	15.1	0.0	0.036	14.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|124027060|ref|YP_001012380.1|	-	0.019	14.7	0.0	0.044	13.5	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Topoisom_bac	PF01131.15	gi|124027060|ref|YP_001012380.1|	-	0.02	13.7	0.1	0.025	13.3	0.1	1.1	1	0	0	1	1	1	0	DNA	topoisomerase
HTH_5	PF01022.15	gi|124027060|ref|YP_001012380.1|	-	0.027	14.1	0.0	0.044	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.1	gi|124027060|ref|YP_001012380.1|	-	0.04	13.9	0.0	0.12	12.3	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|124027060|ref|YP_001012380.1|	-	0.073	12.8	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
CobN-Mg_chel	PF02514.11	gi|124027060|ref|YP_001012380.1|	-	0.078	10.3	0.0	0.099	10.0	0.0	1.1	1	0	0	1	1	1	0	CobN/Magnesium	Chelatase
HTH_10	PF04967.7	gi|124027060|ref|YP_001012380.1|	-	0.11	12.1	0.1	0.22	11.1	0.1	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Ribosomal_S19e	PF01090.14	gi|124027060|ref|YP_001012380.1|	-	0.11	11.9	0.0	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S19e
FeoA	PF04023.9	gi|124027061|ref|YP_001012381.1|	-	7.5e-19	67.4	1.2	8.4e-19	67.3	0.8	1.0	1	0	0	1	1	1	1	FeoA	domain
YcfA	PF07927.7	gi|124027062|ref|YP_001012382.1|	-	0.023	14.6	0.1	0.16	11.9	0.0	2.1	2	0	0	2	2	2	0	YcfA-like	protein
Prim-Pol	PF09250.6	gi|124027062|ref|YP_001012382.1|	-	0.028	14.4	0.0	0.028	14.4	0.0	1.0	1	0	0	1	1	1	0	Bifunctional	DNA	primase/polymerase,	N-terminal
Peptidase_M32	PF02074.10	gi|124027063|ref|YP_001012383.1|	-	3.5e-165	550.3	5.6	4e-165	550.2	3.9	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
Thioredoxin_4	PF13462.1	gi|124027064|ref|YP_001012384.1|	-	1.2e-12	48.0	0.0	2.3e-12	47.2	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|124027064|ref|YP_001012384.1|	-	2.2e-07	31.0	0.0	9.6e-07	28.9	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.15	gi|124027064|ref|YP_001012384.1|	-	1.1e-06	28.3	0.1	0.00039	20.0	0.0	2.7	2	1	0	2	2	2	1	DSBA-like	thioredoxin	domain
DAP_epimerase	PF01678.14	gi|124027064|ref|YP_001012384.1|	-	0.069	13.0	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Diaminopimelate	epimerase
DUF3418	PF11898.3	gi|124027065|ref|YP_001012385.1|	-	0.011	14.2	1.5	0.016	13.6	1.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3418)
EzrA	PF06160.7	gi|124027065|ref|YP_001012385.1|	-	0.017	13.3	2.0	0.02	13.0	0.3	1.7	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
FUSC	PF04632.7	gi|124027065|ref|YP_001012385.1|	-	0.021	13.2	2.2	0.023	13.1	1.5	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Filament	PF00038.16	gi|124027065|ref|YP_001012385.1|	-	0.034	13.6	0.6	0.034	13.6	0.4	1.6	2	0	0	2	2	2	0	Intermediate	filament	protein
DUF16	PF01519.11	gi|124027065|ref|YP_001012385.1|	-	0.037	14.2	0.1	0.14	12.4	0.0	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	DUF16
FlgN	PF05130.7	gi|124027065|ref|YP_001012385.1|	-	0.041	14.1	7.2	0.026	14.7	3.7	1.7	2	0	0	2	2	2	0	FlgN	protein
ScdA_N	PF04405.9	gi|124027065|ref|YP_001012385.1|	-	0.049	13.0	0.7	1.1	8.7	0.0	2.7	1	1	1	2	2	2	0	Domain	of	Unknown	function	(DUF542)
RP1-2	PF12042.3	gi|124027065|ref|YP_001012385.1|	-	0.055	13.1	0.1	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Tubuliform	egg	casing	silk	strands	structural	domain
Plasmid_stabil	PF05016.9	gi|124027065|ref|YP_001012385.1|	-	0.061	13.7	1.7	1.8	9.0	0.0	3.2	2	1	1	3	3	3	0	Plasmid	stabilisation	system	protein
Bombinin	PF05298.6	gi|124027065|ref|YP_001012385.1|	-	0.076	12.4	0.2	0.15	11.5	0.1	1.6	1	0	0	1	1	1	0	Bombinin
BLOC1_2	PF10046.4	gi|124027065|ref|YP_001012385.1|	-	0.081	13.0	0.3	0.25	11.5	0.0	1.9	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
RPW8	PF05659.6	gi|124027065|ref|YP_001012385.1|	-	0.095	12.2	0.1	0.16	11.5	0.1	1.3	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
MutS_III	PF05192.13	gi|124027065|ref|YP_001012385.1|	-	0.1	12.3	0.8	0.13	11.9	0.6	1.2	1	0	0	1	1	1	0	MutS	domain	III
HSBP1	PF06825.7	gi|124027065|ref|YP_001012385.1|	-	0.1	12.1	0.9	0.32	10.5	0.1	2.2	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
Matrilin_ccoil	PF10393.4	gi|124027065|ref|YP_001012385.1|	-	0.1	11.9	1.3	0.28	10.5	0.1	2.4	2	0	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
Rsa3	PF14615.1	gi|124027065|ref|YP_001012385.1|	-	0.11	11.7	0.3	3.6	6.9	0.0	2.3	2	0	0	2	2	2	0	Ribosome-assembly	protein	3
ORF6C	PF10552.4	gi|124027065|ref|YP_001012385.1|	-	0.12	12.0	0.9	0.16	11.6	0.1	1.5	2	0	0	2	2	2	0	ORF6C	domain
CorA	PF01544.13	gi|124027065|ref|YP_001012385.1|	-	0.21	10.5	1.8	0.22	10.5	0.5	1.5	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
DASH_Dad3	PF08656.5	gi|124027065|ref|YP_001012385.1|	-	0.39	10.4	3.3	5.8	6.6	0.7	2.6	2	1	0	2	2	2	0	DASH	complex	subunit	Dad3
IncA	PF04156.9	gi|124027065|ref|YP_001012385.1|	-	0.53	9.8	6.6	0.59	9.7	2.5	2.0	2	0	0	2	2	2	0	IncA	protein
SlyX	PF04102.7	gi|124027065|ref|YP_001012385.1|	-	1.1	9.6	5.9	0.71	10.2	1.4	2.4	3	0	0	3	3	3	0	SlyX
NUDIX	PF00293.23	gi|124027066|ref|YP_001012386.1|	-	1.4e-18	66.8	1.2	1.9e-18	66.4	0.8	1.2	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|124027066|ref|YP_001012386.1|	-	0.03	13.7	0.3	0.073	12.4	0.0	1.7	2	0	0	2	2	2	0	NUDIX	domain
RuvB_N	PF05496.7	gi|124027067|ref|YP_001012387.1|	-	0.088	11.8	0.0	0.13	11.3	0.0	1.2	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Peripla_BP_2	PF01497.13	gi|124027068|ref|YP_001012388.1|	-	2e-37	128.5	0.0	2.5e-37	128.2	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
EpuA	PF11772.3	gi|124027068|ref|YP_001012388.1|	-	0.05	13.0	4.5	0.13	11.7	3.1	1.7	1	0	0	1	1	1	0	DNA-directed	RNA	polymerase	subunit	beta
FecCD	PF01032.13	gi|124027069|ref|YP_001012389.1|	-	1.2e-63	214.8	41.8	1.4e-63	214.5	29.0	1.0	1	0	0	1	1	1	1	FecCD	transport	family
ABC_tran	PF00005.22	gi|124027070|ref|YP_001012390.1|	-	8.6e-09	35.8	0.1	1.1e-08	35.5	0.1	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_23	PF13476.1	gi|124027070|ref|YP_001012390.1|	-	1.8e-07	31.7	0.0	1.9e-07	31.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_21	PF13304.1	gi|124027070|ref|YP_001012390.1|	-	0.00011	22.2	0.1	0.00015	21.8	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027070|ref|YP_001012390.1|	-	0.00015	21.2	0.4	0.00033	20.1	0.2	1.6	1	1	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|124027070|ref|YP_001012390.1|	-	0.00033	19.8	0.0	0.00033	19.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Arch_ATPase	PF01637.13	gi|124027070|ref|YP_001012390.1|	-	0.00064	19.4	0.0	0.00066	19.4	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
MutS_V	PF00488.16	gi|124027070|ref|YP_001012390.1|	-	0.0012	18.3	0.0	0.0012	18.2	0.0	1.0	1	0	0	1	1	1	1	MutS	domain	V
AAA_25	PF13481.1	gi|124027070|ref|YP_001012390.1|	-	0.0024	17.2	0.0	0.0024	17.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|124027070|ref|YP_001012390.1|	-	0.0025	16.9	0.1	0.0025	16.9	0.1	1.0	1	0	0	1	1	1	1	AAA	ATPase	domain
cobW	PF02492.14	gi|124027070|ref|YP_001012390.1|	-	0.0026	17.2	0.1	0.0035	16.8	0.1	1.2	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.1	gi|124027070|ref|YP_001012390.1|	-	0.0032	17.6	0.0	0.0039	17.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|124027070|ref|YP_001012390.1|	-	0.0034	15.9	0.1	0.0036	15.8	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027070|ref|YP_001012390.1|	-	0.0048	16.6	0.1	0.0067	16.1	0.1	1.2	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|124027070|ref|YP_001012390.1|	-	0.0059	16.4	0.0	0.0088	15.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|124027070|ref|YP_001012390.1|	-	0.0063	16.1	0.0	0.0063	16.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_24	PF13479.1	gi|124027070|ref|YP_001012390.1|	-	0.0068	16.0	0.1	0.0074	15.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|124027070|ref|YP_001012390.1|	-	0.0078	15.4	0.0	0.0078	15.4	0.0	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|124027070|ref|YP_001012390.1|	-	0.011	15.7	0.0	0.012	15.6	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
NACHT	PF05729.7	gi|124027070|ref|YP_001012390.1|	-	0.014	15.1	0.1	0.016	14.8	0.0	1.2	1	0	0	1	1	1	0	NACHT	domain
Zeta_toxin	PF06414.7	gi|124027070|ref|YP_001012390.1|	-	0.02	14.0	0.0	0.021	13.9	0.0	1.1	1	0	0	1	1	1	0	Zeta	toxin
AAA_10	PF12846.2	gi|124027070|ref|YP_001012390.1|	-	0.026	13.9	0.0	0.03	13.7	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
AAA_30	PF13604.1	gi|124027070|ref|YP_001012390.1|	-	0.03	13.8	0.0	0.037	13.5	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.4	gi|124027070|ref|YP_001012390.1|	-	0.033	12.7	0.0	0.033	12.7	0.0	1.1	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_28	PF13521.1	gi|124027070|ref|YP_001012390.1|	-	0.039	13.9	0.0	0.047	13.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|124027070|ref|YP_001012390.1|	-	0.043	13.6	0.0	0.052	13.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|124027070|ref|YP_001012390.1|	-	0.062	12.7	0.0	0.066	12.7	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
PEPCK_ATP	PF01293.15	gi|124027070|ref|YP_001012390.1|	-	0.074	11.5	0.0	0.074	11.5	0.0	1.1	1	0	0	1	1	1	0	Phosphoenolpyruvate	carboxykinase
Arf	PF00025.16	gi|124027070|ref|YP_001012390.1|	-	0.085	12.0	0.1	0.091	11.9	0.1	1.1	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
T2SE	PF00437.15	gi|124027070|ref|YP_001012390.1|	-	0.12	11.2	0.0	0.12	11.1	0.0	1.1	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF3584	PF12128.3	gi|124027070|ref|YP_001012390.1|	-	0.12	9.6	0.1	0.13	9.5	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
ABC_tran	PF00005.22	gi|124027071|ref|YP_001012391.1|	-	2e-10	41.0	0.0	3.2e-10	40.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
Robl_LC7	PF03259.12	gi|124027072|ref|YP_001012392.1|	-	8.4e-11	41.2	0.1	1e-10	41.0	0.1	1.1	1	0	0	1	1	1	1	Roadblock/LC7	domain
MAPKK1_Int	PF08923.5	gi|124027072|ref|YP_001012392.1|	-	2.4e-07	30.4	0.0	2.7e-07	30.2	0.0	1.1	1	0	0	1	1	1	1	Mitogen-activated	protein	kinase	kinase	1	interacting
HHH	PF00633.18	gi|124027073|ref|YP_001012393.1|	-	1.4e-05	24.5	0.0	2.8e-05	23.5	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|124027073|ref|YP_001012393.1|	-	0.0025	17.9	0.0	0.0049	17.0	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
Transposase_20	PF02371.11	gi|124027073|ref|YP_001012393.1|	-	0.068	13.2	0.1	0.27	11.3	0.0	2.1	2	0	0	2	2	2	0	Transposase	IS116/IS110/IS902	family
HHH_8	PF14716.1	gi|124027073|ref|YP_001012393.1|	-	0.08	13.1	0.1	0.47	10.6	0.0	2.1	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Radical_SAM	PF04055.16	gi|124027074|ref|YP_001012394.1|	-	1.4e-22	80.5	0.0	2.1e-22	80.0	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|124027074|ref|YP_001012394.1|	-	2e-09	37.5	0.0	2.9e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124027074|ref|YP_001012394.1|	-	3.8e-09	36.7	0.0	5.4e-09	36.2	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
ANTAR	PF03861.9	gi|124027074|ref|YP_001012394.1|	-	0.037	13.5	0.2	0.87	9.2	0.1	2.4	2	0	0	2	2	2	0	ANTAR	domain
DUF3146	PF11344.3	gi|124027074|ref|YP_001012394.1|	-	0.18	11.2	0.6	3.1	7.3	0.2	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3146)
PTPS	PF01242.14	gi|124027075|ref|YP_001012395.1|	-	1.7e-21	76.1	0.1	2e-21	75.9	0.0	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
NMD3	PF04981.8	gi|124027075|ref|YP_001012395.1|	-	0.031	13.3	0.0	0.042	12.9	0.0	1.2	1	0	0	1	1	1	0	NMD3	family
Fer4_14	PF13394.1	gi|124027076|ref|YP_001012396.1|	-	1.9e-23	82.7	0.0	2.9e-23	82.1	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|124027076|ref|YP_001012396.1|	-	2e-15	57.3	0.0	6e-15	55.7	0.0	1.7	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124027076|ref|YP_001012396.1|	-	1.2e-12	48.0	0.0	2.2e-12	47.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
EPSP_synthase	PF00275.15	gi|124027076|ref|YP_001012396.1|	-	0.0037	15.7	0.0	0.0052	15.2	0.0	1.1	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
UDG	PF03167.14	gi|124027076|ref|YP_001012396.1|	-	0.063	12.7	0.0	0.97	8.8	0.0	2.4	1	1	1	2	2	2	0	Uracil	DNA	glycosylase	superfamily
Pyr_redox_2	PF07992.9	gi|124027077|ref|YP_001012397.1|	-	3.9e-33	115.0	0.4	5.1e-33	114.6	0.2	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027077|ref|YP_001012397.1|	-	9.6e-17	61.7	0.2	9.3e-12	45.4	0.0	2.4	2	1	1	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|124027077|ref|YP_001012397.1|	-	1.3e-11	44.0	9.2	6.9e-07	28.4	2.5	4.0	2	2	2	4	4	4	2	FAD	binding	domain
DAO	PF01266.19	gi|124027077|ref|YP_001012397.1|	-	4.2e-11	42.3	4.0	1.5e-07	30.7	1.1	2.6	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|124027077|ref|YP_001012397.1|	-	6.1e-10	38.6	2.6	6.7e-09	35.2	1.8	2.2	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|124027077|ref|YP_001012397.1|	-	1.7e-09	37.9	3.9	0.00051	20.4	0.8	3.6	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|124027077|ref|YP_001012397.1|	-	1.9e-09	37.4	0.6	2.9e-08	33.5	0.1	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.2	gi|124027077|ref|YP_001012397.1|	-	1.4e-08	34.2	1.6	1.2e-05	24.6	0.4	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|124027077|ref|YP_001012397.1|	-	1.3e-07	30.5	0.4	0.0023	16.4	0.5	2.9	3	0	0	3	3	3	2	HI0933-like	protein
Thi4	PF01946.12	gi|124027077|ref|YP_001012397.1|	-	2e-07	30.3	1.9	5.9e-07	28.8	0.1	2.3	2	1	1	3	3	3	1	Thi4	family
GIDA	PF01134.17	gi|124027077|ref|YP_001012397.1|	-	1.6e-06	27.2	1.9	1.1e-05	24.5	0.2	3.0	4	0	0	4	4	4	1	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|124027077|ref|YP_001012397.1|	-	0.00033	20.8	0.3	0.038	14.2	0.0	2.5	2	1	0	2	2	2	1	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.14	gi|124027077|ref|YP_001012397.1|	-	0.00056	19.1	0.1	1.1	8.3	0.0	2.5	2	0	0	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.1	gi|124027077|ref|YP_001012397.1|	-	0.00062	18.7	0.0	4.5	6.0	0.0	3.1	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Shikimate_DH	PF01488.15	gi|124027077|ref|YP_001012397.1|	-	0.00072	19.6	0.4	0.0064	16.5	0.1	2.6	3	0	0	3	3	3	1	Shikimate	/	quinate	5-dehydrogenase
Lycopene_cycl	PF05834.7	gi|124027077|ref|YP_001012397.1|	-	0.0033	16.3	1.3	0.024	13.5	1.0	2.0	1	1	1	2	2	2	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|124027077|ref|YP_001012397.1|	-	0.0081	14.8	0.7	0.013	14.1	0.5	1.3	1	0	0	1	1	1	1	Tryptophan	halogenase
Amino_oxidase	PF01593.19	gi|124027077|ref|YP_001012397.1|	-	0.012	14.6	0.9	0.054	12.5	0.2	2.1	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.1	gi|124027077|ref|YP_001012397.1|	-	0.013	15.2	6.9	0.79	9.4	0.0	3.1	4	0	0	4	4	3	0	FAD-NAD(P)-binding
ThiF	PF00899.16	gi|124027077|ref|YP_001012397.1|	-	0.013	15.2	3.7	0.032	14.0	0.1	2.5	3	0	0	3	3	2	0	ThiF	family
IlvN	PF07991.7	gi|124027077|ref|YP_001012397.1|	-	0.027	13.8	0.3	0.68	9.2	0.0	2.2	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
3HCDH_N	PF02737.13	gi|124027077|ref|YP_001012397.1|	-	0.04	13.5	0.2	0.084	12.5	0.2	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|124027077|ref|YP_001012397.1|	-	0.045	13.1	0.7	0.091	12.2	0.5	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_10	PF13460.1	gi|124027077|ref|YP_001012397.1|	-	0.057	13.4	1.6	0.82	9.6	0.5	2.8	3	0	0	3	3	3	0	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|124027077|ref|YP_001012397.1|	-	0.073	12.7	0.8	1.4	8.6	0.2	2.4	2	1	1	3	3	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.13	gi|124027077|ref|YP_001012397.1|	-	0.08	12.9	0.9	1.9	8.4	0.1	2.8	2	1	1	3	3	3	0	TrkA-N	domain
AlaDh_PNT_C	PF01262.16	gi|124027077|ref|YP_001012397.1|	-	0.12	11.8	2.8	0.31	10.6	0.2	2.6	3	0	0	3	3	3	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|124027077|ref|YP_001012397.1|	-	0.22	10.9	2.5	0.17	11.2	0.3	1.8	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
GCV_H	PF01597.14	gi|124027078|ref|YP_001012398.1|	-	1.4e-48	163.5	0.5	1.7e-48	163.3	0.3	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.17	gi|124027078|ref|YP_001012398.1|	-	2.3e-05	23.9	0.5	4.6e-05	22.9	0.1	1.7	2	0	0	2	2	2	1	Biotin-requiring	enzyme
RnfC_N	PF13375.1	gi|124027078|ref|YP_001012398.1|	-	2.3e-05	24.0	0.0	3.9e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
HlyD_3	PF13437.1	gi|124027078|ref|YP_001012398.1|	-	0.049	13.9	0.1	15	6.0	0.0	2.5	2	0	0	2	2	2	0	HlyD	family	secretion	protein
Oxidored_q4	PF00507.14	gi|124027079|ref|YP_001012399.1|	-	0.0016	18.2	1.8	0.002	17.9	0.9	1.4	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
Oxidored_q6	PF01058.17	gi|124027080|ref|YP_001012400.1|	-	1.9e-23	82.5	0.0	2.8e-23	81.9	0.0	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_30kDa	PF00329.14	gi|124027081|ref|YP_001012401.1|	-	2.9e-34	117.3	0.0	3.9e-34	116.9	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
Complex1_49kDa	PF00346.14	gi|124027082|ref|YP_001012402.1|	-	7.3e-56	189.1	0.0	2.6e-55	187.3	0.0	1.7	2	0	0	2	2	2	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NADHdh	PF00146.16	gi|124027083|ref|YP_001012403.1|	-	5.5e-45	153.7	17.0	6.4e-45	153.5	11.8	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.22	gi|124027084|ref|YP_001012404.1|	-	8e-16	56.9	13.5	2.8e-08	33.0	1.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124027084|ref|YP_001012404.1|	-	5.4e-12	45.3	15.7	6.3e-09	35.4	6.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027084|ref|YP_001012404.1|	-	1.9e-11	43.3	12.4	1.5e-06	27.7	1.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|124027084|ref|YP_001012404.1|	-	2.8e-11	42.6	10.8	5.5e-06	25.9	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|124027084|ref|YP_001012404.1|	-	4.7e-11	42.8	8.0	9.2e-11	41.9	5.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124027084|ref|YP_001012404.1|	-	1.6e-10	41.0	7.7	2.7e-10	40.3	5.4	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124027084|ref|YP_001012404.1|	-	1.3e-09	37.9	12.8	1.1e-05	25.3	7.0	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124027084|ref|YP_001012404.1|	-	2.4e-09	37.8	4.2	0.00063	20.4	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|124027084|ref|YP_001012404.1|	-	2.3e-08	33.7	9.7	8.3e-08	31.9	6.8	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124027084|ref|YP_001012404.1|	-	2.3e-07	30.5	12.2	0.002	18.2	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|124027084|ref|YP_001012404.1|	-	6.5e-07	29.8	4.1	0.0032	18.0	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|124027084|ref|YP_001012404.1|	-	2.4e-06	27.7	6.4	0.012	15.9	6.7	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124027084|ref|YP_001012404.1|	-	8.8e-05	22.8	13.1	0.018	15.4	1.4	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|124027084|ref|YP_001012404.1|	-	9.1e-05	22.7	16.4	0.014	15.9	2.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|124027084|ref|YP_001012404.1|	-	0.0028	17.9	13.3	0.099	13.0	2.3	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Oxidored_q3	PF00499.15	gi|124027085|ref|YP_001012405.1|	-	1.3e-14	54.1	9.8	1.8e-14	53.7	6.8	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF554	PF04474.7	gi|124027085|ref|YP_001012405.1|	-	0.011	14.9	6.3	0.011	14.9	4.3	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF554)
ABC2_membrane_5	PF13346.1	gi|124027085|ref|YP_001012405.1|	-	7.2	5.8	14.2	11	5.2	9.8	1.4	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Oxidored_q2	PF00420.19	gi|124027086|ref|YP_001012406.1|	-	1.3e-10	40.7	10.2	1.5e-10	40.5	7.0	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
PrgI	PF12666.2	gi|124027086|ref|YP_001012406.1|	-	1.7	8.8	6.2	8.4	6.6	4.3	1.9	1	1	0	1	1	1	0	PrgI	family	protein
MHYT	PF03707.11	gi|124027086|ref|YP_001012406.1|	-	6.6	6.9	9.2	1.8	8.7	1.2	2.3	2	1	0	2	2	2	0	Bacterial	signalling	protein	N	terminal	repeat
Oxidored_q1	PF00361.15	gi|124027087|ref|YP_001012407.1|	-	7.3e-54	182.8	17.9	2.3e-53	181.1	12.4	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|124027087|ref|YP_001012407.1|	-	0.004	16.6	1.7	0.004	16.6	1.2	2.5	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|124027088|ref|YP_001012408.1|	-	1.4e-49	168.7	35.9	1.1e-48	165.8	15.9	2.9	3	0	0	3	3	3	2	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|124027088|ref|YP_001012408.1|	-	0.0002	20.8	0.3	0.0002	20.8	0.2	2.3	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
NADH5_C	PF06455.6	gi|124027088|ref|YP_001012408.1|	-	0.00037	19.9	0.0	0.00037	19.9	0.0	3.7	4	1	0	4	4	4	1	NADH	dehydrogenase	subunit	5	C-terminus
Oxidored_q1	PF00361.15	gi|124027089|ref|YP_001012409.1|	-	4.7e-42	144.1	9.2	1.1e-41	142.8	6.4	1.7	1	0	0	1	1	1	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Ycf66_N	PF07444.6	gi|124027089|ref|YP_001012409.1|	-	0.96	9.2	7.5	6.1	6.6	0.2	3.7	2	1	1	3	3	3	0	Ycf66	protein	N-terminus
NAD_binding_2	PF03446.10	gi|124027090|ref|YP_001012410.1|	-	1.4e-25	90.0	1.6	1.8e-25	89.7	0.1	1.8	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.1	gi|124027090|ref|YP_001012410.1|	-	6.1e-11	42.4	0.0	1.1e-10	41.5	0.0	1.5	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.12	gi|124027090|ref|YP_001012410.1|	-	5.1e-09	36.4	0.4	2.1e-07	31.2	0.1	2.4	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.15	gi|124027090|ref|YP_001012410.1|	-	2.2e-08	34.2	0.1	4.2e-08	33.3	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.13	gi|124027090|ref|YP_001012410.1|	-	1.4e-06	28.3	0.2	0.00024	21.0	0.2	3.0	2	1	0	2	2	2	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|124027090|ref|YP_001012410.1|	-	5.5e-05	22.3	0.1	0.00017	20.8	0.0	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|124027090|ref|YP_001012410.1|	-	5.8e-05	22.8	0.1	0.00024	20.8	0.0	1.9	1	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|124027090|ref|YP_001012410.1|	-	9.9e-05	22.0	0.1	0.00017	21.3	0.0	1.5	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|124027090|ref|YP_001012410.1|	-	0.00017	21.5	0.8	0.047	13.6	0.2	2.5	2	0	0	2	2	2	2	short	chain	dehydrogenase
IlvN	PF07991.7	gi|124027090|ref|YP_001012410.1|	-	0.00018	20.8	0.0	0.00065	19.1	0.0	1.8	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Saccharop_dh	PF03435.13	gi|124027090|ref|YP_001012410.1|	-	0.00039	19.5	0.1	0.00052	19.1	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
ApbA	PF02558.11	gi|124027090|ref|YP_001012410.1|	-	0.0013	18.1	0.1	0.0023	17.3	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Cytochrome_cB	PF11783.3	gi|124027091|ref|YP_001012411.1|	-	3.8e-39	133.9	0.0	3.8e-39	133.9	0.0	4.8	7	0	0	7	7	7	1	Cytochrome	c	bacterial
Cytochrome_C7	PF14522.1	gi|124027091|ref|YP_001012411.1|	-	7.4e-14	51.1	17.3	2.3e-06	27.1	4.9	5.2	4	1	0	4	4	4	3	Cytochrome	c7
Cytochrome_C554	PF13435.1	gi|124027091|ref|YP_001012411.1|	-	1.9e-12	47.3	15.8	6.7e-05	22.9	0.1	5.4	3	1	3	6	6	6	5	Cytochrome	c554	and	c-prime
Cytochrom_c3_2	PF14537.1	gi|124027091|ref|YP_001012411.1|	-	6.8e-07	29.5	23.9	0.013	15.8	6.3	5.4	5	1	0	5	5	5	2	Cytochrome	c3
Cytochrom_CIII	PF02085.11	gi|124027091|ref|YP_001012411.1|	-	3.6e-05	23.8	15.1	0.00037	20.5	1.9	4.9	5	0	0	5	5	5	1	Class	III	cytochrome	C	family
Paired_CXXCH_1	PF09699.5	gi|124027091|ref|YP_001012411.1|	-	0.00058	19.3	35.1	2.7	7.5	0.1	6.9	5	1	2	7	7	7	3	Doubled	CXXCH	motif	(Paired_CXXCH_1)
Cytochrom_NNT	PF03264.9	gi|124027091|ref|YP_001012411.1|	-	0.047	13.1	28.4	1.5	8.1	3.6	6.3	4	1	1	6	6	6	0	NapC/NirT	cytochrome	c	family,	N-terminal	region
Cytochrom_C552	PF02335.10	gi|124027091|ref|YP_001012411.1|	-	0.48	9.0	14.8	3.6	6.1	2.9	4.6	4	1	1	5	5	5	0	Cytochrome	c552
Cytochrom_C	PF00034.16	gi|124027091|ref|YP_001012411.1|	-	2.7	8.8	32.2	3.8	8.4	0.1	7.4	4	2	2	6	6	6	0	Cytochrome	c
Transport_MerF	PF11431.3	gi|124027092|ref|YP_001012412.1|	-	0.07	12.7	0.2	0.14	11.8	0.2	1.4	1	0	0	1	1	1	0	Membrane	transport	protein	MerF
Macro	PF01661.16	gi|124027093|ref|YP_001012413.1|	-	1e-24	86.6	0.0	2.1e-24	85.6	0.0	1.5	1	0	0	1	1	1	1	Macro	domain
Macro_2	PF14519.1	gi|124027093|ref|YP_001012413.1|	-	0.033	13.3	0.0	0.35	9.9	0.0	2.1	1	1	0	1	1	1	0	Macro-like	domain
Usp	PF00582.21	gi|124027093|ref|YP_001012413.1|	-	0.067	13.3	0.4	0.24	11.6	0.1	2.0	3	0	0	3	3	3	0	Universal	stress	protein	family
PaREP1	PF05942.6	gi|124027094|ref|YP_001012414.1|	-	0.013	15.3	0.5	0.031	14.1	0.3	1.8	1	1	0	1	1	1	0	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|124027094|ref|YP_001012414.1|	-	0.039	13.8	0.0	0.063	13.1	0.0	1.4	1	0	0	1	1	1	0	HEPN	domain
YqzM	PF14141.1	gi|124027095|ref|YP_001012415.1|	-	4.5	7.1	5.8	7.3	6.4	4.0	1.3	1	0	0	1	1	1	0	YqzM-like	protein
EamA	PF00892.15	gi|124027096|ref|YP_001012416.1|	-	3e-20	72.5	25.1	9.6e-14	51.5	5.5	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
CoA_binding	PF02629.14	gi|124027099|ref|YP_001012419.1|	-	1.5e-30	105.5	0.9	4.8e-30	103.9	0.2	2.0	2	0	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|124027099|ref|YP_001012419.1|	-	1.2e-17	63.9	0.2	2.7e-17	62.7	0.0	1.7	2	1	0	2	2	2	1	CoA-ligase
Succ_CoA_lig	PF13607.1	gi|124027099|ref|YP_001012419.1|	-	2.2e-14	53.2	0.0	5.4e-14	51.9	0.0	1.7	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|124027099|ref|YP_001012419.1|	-	5.1e-10	39.5	0.1	1.8e-09	37.7	0.0	1.9	3	0	0	3	3	3	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.17	gi|124027099|ref|YP_001012419.1|	-	0.0043	17.5	0.1	0.013	16.0	0.1	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DapB_N	PF01113.15	gi|124027099|ref|YP_001012419.1|	-	0.077	12.9	0.2	0.17	11.7	0.1	1.7	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
PHP	PF02811.14	gi|124027099|ref|YP_001012419.1|	-	0.16	11.7	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	PHP	domain
ATP-grasp_2	PF08442.5	gi|124027100|ref|YP_001012420.1|	-	1.1e-53	181.6	0.0	1.7e-53	181.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Ligase_CoA	PF00549.14	gi|124027100|ref|YP_001012420.1|	-	2.4e-17	62.9	0.0	4.1e-17	62.1	0.0	1.3	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_5	PF13549.1	gi|124027100|ref|YP_001012420.1|	-	0.00066	18.9	0.2	0.0091	15.2	0.1	2.6	2	1	0	2	2	2	1	ATP-grasp	domain
DUF362	PF04015.7	gi|124027100|ref|YP_001012420.1|	-	0.014	14.8	0.0	1.3	8.4	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF362)
GARS_A	PF01071.14	gi|124027100|ref|YP_001012420.1|	-	0.04	13.4	0.0	0.068	12.7	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
RHH_1	PF01402.16	gi|124027101|ref|YP_001012421.1|	-	4.2e-12	45.4	0.1	8e-12	44.5	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
NikR_C	PF08753.6	gi|124027101|ref|YP_001012421.1|	-	1.1e-07	31.6	0.0	1.5e-07	31.1	0.0	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
DUF2191	PF09957.4	gi|124027101|ref|YP_001012421.1|	-	0.0083	15.9	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
RHH_3	PF12651.2	gi|124027101|ref|YP_001012421.1|	-	0.0092	15.6	0.7	0.02	14.5	0.5	1.6	1	1	0	1	1	1	1	Ribbon-helix-helix	domain
DUF1160	PF06648.6	gi|124027101|ref|YP_001012421.1|	-	0.037	13.7	0.1	0.047	13.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1160)
Peptidase_U35_2	PF14550.1	gi|124027101|ref|YP_001012421.1|	-	0.11	12.1	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Putative	phage	protease	XkdF
Hydrolase	PF00702.21	gi|124027102|ref|YP_001012422.1|	-	1.4e-31	110.6	0.1	2.9e-31	109.5	0.2	1.5	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.15	gi|124027102|ref|YP_001012422.1|	-	2.5e-21	75.7	0.0	5e-21	74.7	0.0	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
HAD	PF12710.2	gi|124027102|ref|YP_001012422.1|	-	6.3e-14	52.5	0.0	1.3e-13	51.5	0.0	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|124027102|ref|YP_001012422.1|	-	5.7e-07	29.3	0.1	0.0093	15.5	0.0	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|124027102|ref|YP_001012422.1|	-	0.0098	16.1	0.0	0.045	13.9	0.0	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
CCT_2	PF09425.5	gi|124027102|ref|YP_001012422.1|	-	0.022	14.3	0.7	0.072	12.6	0.5	1.9	1	0	0	1	1	1	0	Divergent	CCT	motif
FKBP_C	PF00254.23	gi|124027102|ref|YP_001012422.1|	-	0.04	13.9	0.0	4.1	7.4	0.0	2.3	2	0	0	2	2	2	0	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
GlutR_N	PF05201.10	gi|124027103|ref|YP_001012423.1|	-	3.4e-34	117.6	0.0	6.7e-34	116.6	0.0	1.5	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|124027103|ref|YP_001012423.1|	-	2.2e-21	76.3	0.5	4.6e-21	75.3	0.4	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.15	gi|124027103|ref|YP_001012423.1|	-	5.5e-13	48.7	0.5	1e-12	47.8	0.4	1.4	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
F420_oxidored	PF03807.12	gi|124027103|ref|YP_001012423.1|	-	1.4e-05	25.4	0.6	1.4e-05	25.4	0.4	3.0	4	0	0	4	4	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
OCD_Mu_crystall	PF02423.10	gi|124027103|ref|YP_001012423.1|	-	9.9e-05	21.2	0.4	0.00017	20.4	0.3	1.3	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
2-Hacid_dh_C	PF02826.14	gi|124027103|ref|YP_001012423.1|	-	0.00076	18.6	0.0	0.0013	17.8	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Glyco_trans_1_4	PF13692.1	gi|124027103|ref|YP_001012423.1|	-	0.005	16.9	1.6	0.93	9.6	0.1	3.1	2	1	1	3	3	3	1	Glycosyl	transferases	group	1
THF_DHG_CYH_C	PF02882.14	gi|124027103|ref|YP_001012423.1|	-	0.007	15.4	2.9	0.063	12.3	0.8	2.6	2	1	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
AdoHcyase_NAD	PF00670.16	gi|124027103|ref|YP_001012423.1|	-	0.01	15.6	0.2	0.019	14.7	0.1	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|124027103|ref|YP_001012423.1|	-	0.014	15.4	0.2	0.035	14.1	0.2	1.8	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_7	PF13241.1	gi|124027103|ref|YP_001012423.1|	-	0.021	15.0	0.1	0.047	13.9	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
LVIVD	PF08309.6	gi|124027103|ref|YP_001012423.1|	-	0.057	12.4	0.0	0.12	11.4	0.0	1.4	1	0	0	1	1	1	0	LVIVD	repeat
Lycopene_cycl	PF05834.7	gi|124027103|ref|YP_001012423.1|	-	0.074	11.9	0.3	0.19	10.6	0.1	1.6	2	0	0	2	2	2	0	Lycopene	cyclase	protein
DUF4226	PF10774.4	gi|124027103|ref|YP_001012423.1|	-	0.081	12.9	0.9	6.7	6.7	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4226)
Saccharop_dh	PF03435.13	gi|124027103|ref|YP_001012423.1|	-	0.11	11.4	0.2	0.17	10.8	0.2	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
HTH_10	PF04967.7	gi|124027104|ref|YP_001012424.1|	-	6.6e-18	64.0	0.6	1.2e-17	63.1	0.4	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|124027104|ref|YP_001012424.1|	-	0.015	14.6	0.2	0.034	13.5	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|124027104|ref|YP_001012424.1|	-	0.026	14.1	0.0	0.1	12.3	0.0	2.0	2	0	0	2	2	2	0	MarR	family
HTH_AraC	PF00165.18	gi|124027104|ref|YP_001012424.1|	-	0.081	12.7	0.1	0.31	10.9	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
DUF2795	PF11387.3	gi|124027105|ref|YP_001012425.1|	-	1.1e-08	34.7	0.9	0.0037	17.0	0.0	3.7	3	2	0	3	3	3	2	Protein	of	unknown	function	(DUF2795)
Rep_fac_C	PF08542.6	gi|124027105|ref|YP_001012425.1|	-	0.0015	18.4	0.1	0.065	13.2	0.0	2.5	1	1	0	2	2	2	1	Replication	factor	C	C-terminal	domain
DUF724	PF05266.9	gi|124027105|ref|YP_001012425.1|	-	0.0098	15.5	0.1	0.72	9.4	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF724)
DUF3571	PF12095.3	gi|124027105|ref|YP_001012425.1|	-	0.015	15.4	0.6	4.4	7.6	0.1	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3571)
HHH_5	PF14520.1	gi|124027105|ref|YP_001012425.1|	-	0.024	14.7	1.1	8.8	6.5	0.0	2.7	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
Mod_r	PF07200.8	gi|124027105|ref|YP_001012425.1|	-	0.049	13.5	0.1	8.6	6.2	0.0	2.2	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
MerR	PF00376.18	gi|124027105|ref|YP_001012425.1|	-	0.053	13.0	0.3	11	5.7	0.0	2.4	2	0	0	2	2	2	0	MerR	family	regulatory	protein
Linocin_M18	PF04454.7	gi|124027105|ref|YP_001012425.1|	-	0.064	12.1	0.0	6	5.6	0.0	2.1	2	0	0	2	2	2	0	Encapsulating	protein	for	peroxidase
NADH_4Fe-4S	PF10589.4	gi|124027105|ref|YP_001012425.1|	-	0.17	11.0	2.8	21	4.3	0.0	3.6	4	0	0	4	4	4	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
KaiC	PF06745.8	gi|124027107|ref|YP_001012427.1|	-	3.6e-58	196.3	0.0	2e-55	187.3	0.0	2.3	2	1	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|124027107|ref|YP_001012427.1|	-	3.2e-09	36.4	0.0	3.4e-08	33.1	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|124027107|ref|YP_001012427.1|	-	0.00034	20.2	0.0	0.0026	17.4	0.0	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|124027107|ref|YP_001012427.1|	-	0.00059	19.3	0.0	0.0014	18.0	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_14	PF13173.1	gi|124027107|ref|YP_001012427.1|	-	0.00093	19.1	0.0	0.0024	17.7	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
DnaB_C	PF03796.10	gi|124027107|ref|YP_001012427.1|	-	0.0021	17.0	0.0	0.0041	16.0	0.0	1.5	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_10	PF12846.2	gi|124027107|ref|YP_001012427.1|	-	0.0023	17.4	0.0	0.091	12.1	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|124027107|ref|YP_001012427.1|	-	0.0024	17.9	0.0	0.018	15.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|124027107|ref|YP_001012427.1|	-	0.0037	17.4	0.1	0.11	12.6	0.0	2.4	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|124027107|ref|YP_001012427.1|	-	0.0042	17.9	0.0	0.012	16.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|124027107|ref|YP_001012427.1|	-	0.0053	15.8	0.0	0.0078	15.3	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
NACHT	PF05729.7	gi|124027107|ref|YP_001012427.1|	-	0.0067	16.1	0.0	0.12	12.0	0.0	2.5	2	1	0	2	2	2	1	NACHT	domain
GvpD	PF07088.6	gi|124027107|ref|YP_001012427.1|	-	0.01	14.2	0.2	0.068	11.4	0.1	2.2	1	1	1	2	2	2	0	GvpD	gas	vesicle	protein
AAA_18	PF13238.1	gi|124027107|ref|YP_001012427.1|	-	0.014	15.7	0.0	0.051	13.8	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|124027107|ref|YP_001012427.1|	-	0.017	13.9	0.0	0.033	12.9	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_22	PF13401.1	gi|124027107|ref|YP_001012427.1|	-	0.02	15.0	0.1	0.086	12.9	0.0	2.1	2	2	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|124027107|ref|YP_001012427.1|	-	0.021	14.7	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124027107|ref|YP_001012427.1|	-	0.053	13.0	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PAXNEB	PF05625.6	gi|124027107|ref|YP_001012427.1|	-	0.099	11.4	0.0	0.2	10.4	0.0	1.4	1	0	0	1	1	1	0	PAXNEB	protein
AAA_24	PF13479.1	gi|124027107|ref|YP_001012427.1|	-	0.12	11.9	0.2	3	7.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|124027107|ref|YP_001012427.1|	-	0.14	11.6	0.2	0.37	10.2	0.0	1.7	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
Sigma54_activat	PF00158.21	gi|124027107|ref|YP_001012427.1|	-	0.15	11.5	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Zeta_toxin	PF06414.7	gi|124027107|ref|YP_001012427.1|	-	0.16	11.0	0.0	0.24	10.4	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
DUF2075	PF09848.4	gi|124027107|ref|YP_001012427.1|	-	0.21	10.5	0.0	0.3	9.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
T2SF	PF00482.18	gi|124027108|ref|YP_001012428.1|	-	5.5e-07	29.5	1.4	5.5e-07	29.5	1.0	2.4	4	0	0	4	4	4	1	Type	II	secretion	system	(T2SS),	protein	F
T2SF	PF00482.18	gi|124027109|ref|YP_001012429.1|	-	1.1e-11	44.7	1.5	1.1e-11	44.7	1.0	3.7	5	0	0	5	5	5	1	Type	II	secretion	system	(T2SS),	protein	F
Fumarate_red_D	PF02313.12	gi|124027109|ref|YP_001012429.1|	-	0.13	12.1	11.2	0.8	9.6	0.2	2.5	2	0	0	2	2	2	0	Fumarate	reductase	subunit	D
PSK_trans_fac	PF07704.6	gi|124027109|ref|YP_001012429.1|	-	0.26	12.0	1.0	0.4	11.3	0.0	1.7	2	0	0	2	2	2	0	Rv0623-like	transcription	factor
DUF2207	PF09972.4	gi|124027109|ref|YP_001012429.1|	-	1.7	7.1	9.0	0.82	8.1	1.0	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
T2SE	PF00437.15	gi|124027110|ref|YP_001012430.1|	-	7.8e-50	169.2	0.0	1.1e-49	168.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_22	PF13401.1	gi|124027110|ref|YP_001012430.1|	-	2e-05	24.7	0.0	0.00017	21.7	0.0	2.4	3	0	0	3	3	2	1	AAA	domain
AAA_29	PF13555.1	gi|124027110|ref|YP_001012430.1|	-	3.4e-05	23.2	0.0	0.0001	21.7	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|124027110|ref|YP_001012430.1|	-	4.4e-05	23.7	0.0	0.00011	22.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|124027110|ref|YP_001012430.1|	-	0.0001	22.6	0.0	0.0002	21.6	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_33	PF13671.1	gi|124027110|ref|YP_001012430.1|	-	0.00074	19.4	0.0	0.0021	17.9	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_28	PF13521.1	gi|124027110|ref|YP_001012430.1|	-	0.00075	19.5	0.0	0.0017	18.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027110|ref|YP_001012430.1|	-	0.0011	19.7	0.0	0.0011	19.7	0.0	2.6	2	2	0	3	3	1	1	AAA	domain
AAA_23	PF13476.1	gi|124027110|ref|YP_001012430.1|	-	0.0017	18.6	0.0	0.0033	17.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|124027110|ref|YP_001012430.1|	-	0.0018	18.0	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Arch_ATPase	PF01637.13	gi|124027110|ref|YP_001012430.1|	-	0.0024	17.5	0.0	0.005	16.5	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|124027110|ref|YP_001012430.1|	-	0.0036	17.3	0.0	0.0086	16.0	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|124027110|ref|YP_001012430.1|	-	0.0046	16.6	0.0	0.017	14.8	0.0	2.0	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|124027110|ref|YP_001012430.1|	-	0.0063	16.1	0.0	0.076	12.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|124027110|ref|YP_001012430.1|	-	0.0077	15.4	0.0	0.013	14.6	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
cobW	PF02492.14	gi|124027110|ref|YP_001012430.1|	-	0.0082	15.6	0.0	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.18	gi|124027110|ref|YP_001012430.1|	-	0.01	15.7	0.0	0.021	14.7	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA	PF00004.24	gi|124027110|ref|YP_001012430.1|	-	0.013	15.7	0.0	0.031	14.4	0.0	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.1	gi|124027110|ref|YP_001012430.1|	-	0.013	15.0	0.0	0.029	13.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|124027110|ref|YP_001012430.1|	-	0.015	14.4	0.0	0.05	12.7	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|124027110|ref|YP_001012430.1|	-	0.019	14.7	0.0	0.057	13.1	0.0	1.8	2	0	0	2	2	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_21	PF13304.1	gi|124027110|ref|YP_001012430.1|	-	0.023	14.6	0.0	0.049	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|124027110|ref|YP_001012430.1|	-	0.032	14.1	0.0	0.063	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SRPRB	PF09439.5	gi|124027110|ref|YP_001012430.1|	-	0.039	13.1	0.0	0.061	12.5	0.0	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
NACHT	PF05729.7	gi|124027110|ref|YP_001012430.1|	-	0.059	13.0	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
UPF0079	PF02367.12	gi|124027110|ref|YP_001012430.1|	-	0.067	12.8	0.0	0.19	11.3	0.0	1.7	2	0	0	2	2	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_PrkA	PF08298.6	gi|124027110|ref|YP_001012430.1|	-	0.076	11.6	0.0	0.13	10.9	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
IstB_IS21	PF01695.12	gi|124027110|ref|YP_001012430.1|	-	0.14	11.5	0.0	0.33	10.3	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|124027110|ref|YP_001012430.1|	-	0.18	11.1	0.0	0.5	9.7	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
DUF1628	PF07790.6	gi|124027111|ref|YP_001012431.1|	-	0.00031	21.4	5.0	0.00045	20.9	3.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
CUE	PF02845.11	gi|124027111|ref|YP_001012431.1|	-	0.11	11.9	1.3	0.28	10.7	0.0	2.1	2	0	0	2	2	2	0	CUE	domain
DUF2749	PF10907.3	gi|124027111|ref|YP_001012431.1|	-	1.8	8.4	6.0	0.39	10.6	1.7	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2749)
Radical_SAM	PF04055.16	gi|124027112|ref|YP_001012432.1|	-	1.5e-10	41.4	0.2	1.3e-09	38.4	0.0	2.3	2	1	1	3	3	3	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124027112|ref|YP_001012432.1|	-	2.9e-06	27.4	0.0	4.7e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|124027112|ref|YP_001012432.1|	-	2.4e-05	24.3	0.0	4.6e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PALP	PF00291.20	gi|124027113|ref|YP_001012433.1|	-	3.2e-85	286.0	4.4	4.1e-85	285.7	3.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.20	gi|124027113|ref|YP_001012433.1|	-	6.7e-07	28.6	0.0	2e-06	27.1	0.0	1.8	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|124027113|ref|YP_001012433.1|	-	0.042	14.1	0.0	0.098	13.0	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
ACT_6	PF13740.1	gi|124027113|ref|YP_001012433.1|	-	0.058	13.1	0.1	0.26	11.0	0.0	2.1	1	1	0	1	1	1	0	ACT	domain
Lactamase_B_3	PF13483.1	gi|124027113|ref|YP_001012433.1|	-	0.069	12.8	0.0	0.17	11.5	0.0	1.8	2	0	0	2	2	2	0	Beta-lactamase	superfamily	domain
DAGK_cat	PF00781.19	gi|124027113|ref|YP_001012433.1|	-	0.08	12.3	0.5	0.21	11.0	0.4	1.7	1	1	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Ribonuc_L-PSP	PF01042.16	gi|124027114|ref|YP_001012434.1|	-	3.3e-44	149.5	0.0	3.7e-44	149.3	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Topoisom_bac	PF01131.15	gi|124027115|ref|YP_001012435.1|	-	5.8e-91	305.2	0.0	2.5e-90	303.2	0.0	2.0	2	0	0	2	2	2	1	DNA	topoisomerase
Toprim	PF01751.17	gi|124027115|ref|YP_001012435.1|	-	2.4e-18	65.9	0.0	1.2e-17	63.7	0.0	2.3	2	0	0	2	2	2	1	Toprim	domain
DEAD	PF00270.24	gi|124027115|ref|YP_001012435.1|	-	6.3e-11	42.0	0.0	1.4e-10	40.9	0.0	1.6	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|124027115|ref|YP_001012435.1|	-	9.7e-07	28.5	0.0	0.5	10.2	0.0	3.8	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
HTH_IclR	PF09339.5	gi|124027115|ref|YP_001012435.1|	-	0.0073	15.8	0.0	0.0073	15.8	0.0	4.0	4	0	0	4	4	4	1	IclR	helix-turn-helix	domain
PhoH	PF02562.11	gi|124027115|ref|YP_001012435.1|	-	0.038	13.2	0.0	0.083	12.1	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
SecA_DEAD	PF07517.9	gi|124027115|ref|YP_001012435.1|	-	0.053	12.7	0.1	0.22	10.7	0.0	2.1	3	0	0	3	3	3	0	SecA	DEAD-like	domain
DNA_ligase_ZBD	PF03119.11	gi|124027115|ref|YP_001012435.1|	-	0.13	11.9	0.1	0.13	11.9	0.1	3.3	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
ResIII	PF04851.10	gi|124027115|ref|YP_001012435.1|	-	0.16	11.7	0.0	0.35	10.6	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
DZR	PF12773.2	gi|124027115|ref|YP_001012435.1|	-	0.94	9.3	2.4	16	5.4	0.1	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
DUF87	PF01935.12	gi|124027115|ref|YP_001012435.1|	-	1.2	8.9	4.0	7.1	6.3	0.0	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	DUF87
TF_Zn_Ribbon	PF08271.7	gi|124027115|ref|YP_001012435.1|	-	1.2	8.4	8.4	1.4	8.3	0.2	2.9	3	0	0	3	3	3	0	TFIIB	zinc-binding
FAA_hydrolase	PF01557.13	gi|124027117|ref|YP_001012437.1|	-	3.9e-51	173.5	0.1	5.2e-51	173.1	0.1	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Radical_SAM	PF04055.16	gi|124027118|ref|YP_001012438.1|	-	2.8e-15	56.8	0.0	4.4e-14	52.9	0.0	2.8	2	1	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|124027118|ref|YP_001012438.1|	-	0.00089	19.1	0.0	0.034	14.0	0.0	2.3	2	0	0	2	2	2	1	B12	binding	domain
7TMR-HDED	PF07697.6	gi|124027119|ref|YP_001012439.1|	-	0.11	12.2	0.7	0.14	11.8	0.5	1.1	1	0	0	1	1	1	0	7TM-HD	extracellular
Lactamase_B_2	PF12706.2	gi|124027120|ref|YP_001012440.1|	-	1.3e-17	63.9	0.0	1.8e-17	63.5	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|124027120|ref|YP_001012440.1|	-	2.8e-14	53.2	0.3	3.7e-14	52.8	0.2	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|124027120|ref|YP_001012440.1|	-	8.8e-05	22.2	0.0	0.00025	20.8	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DinB_2	PF12867.2	gi|124027120|ref|YP_001012440.1|	-	0.03	14.6	0.0	0.12	12.7	0.0	1.8	2	0	0	2	2	2	0	DinB	superfamily
Noggin	PF05806.7	gi|124027120|ref|YP_001012440.1|	-	0.046	13.0	0.0	0.22	10.7	0.0	1.8	2	0	0	2	2	2	0	Noggin
Pyridoxal_deC	PF00282.14	gi|124027121|ref|YP_001012441.1|	-	1.3e-17	63.3	0.0	7.3e-15	54.2	0.0	2.1	2	0	0	2	2	2	2	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.14	gi|124027121|ref|YP_001012441.1|	-	5e-11	41.9	0.1	1.2e-10	40.6	0.1	1.5	2	0	0	2	2	2	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|124027121|ref|YP_001012441.1|	-	1.6e-07	30.6	0.0	2.7e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|124027121|ref|YP_001012441.1|	-	9.7e-06	24.8	0.8	9.7e-06	24.8	0.5	1.5	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SLA_LP_auto_ag	PF05889.8	gi|124027121|ref|YP_001012441.1|	-	0.00058	18.4	0.0	0.00082	17.9	0.0	1.1	1	0	0	1	1	1	1	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
DUF996	PF06195.8	gi|124027122|ref|YP_001012442.1|	-	0.039	13.9	10.5	0.045	13.7	6.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF996)
Yip1	PF04893.12	gi|124027122|ref|YP_001012442.1|	-	0.62	9.5	15.8	0.89	9.0	11.0	1.3	1	0	0	1	1	1	0	Yip1	domain
DUF3488	PF11992.3	gi|124027122|ref|YP_001012442.1|	-	0.63	8.6	9.1	1.1	7.7	6.3	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3488)
Pox_A28	PF04584.9	gi|124027122|ref|YP_001012442.1|	-	1.2	9.0	3.2	10	6.0	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A28	family
SNF	PF00209.13	gi|124027123|ref|YP_001012443.1|	-	6.4e-45	153.5	38.0	2e-27	95.8	11.1	2.6	2	1	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
Polysacc_deac_1	PF01522.16	gi|124027124|ref|YP_001012444.1|	-	1.2e-24	86.2	0.0	2.1e-24	85.5	0.0	1.4	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glyco_hydro_57	PF03065.10	gi|124027124|ref|YP_001012444.1|	-	0.0034	16.3	0.0	0.0044	15.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
AhpC-TSA	PF00578.16	gi|124027125|ref|YP_001012445.1|	-	3.3e-37	126.9	0.0	4.8e-37	126.4	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|124027125|ref|YP_001012445.1|	-	4.5e-18	65.1	0.0	6.3e-18	64.7	0.0	1.1	1	0	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.4	gi|124027125|ref|YP_001012445.1|	-	3.1e-12	45.9	0.0	6.4e-12	44.9	0.0	1.5	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
AhpC-TSA_2	PF13911.1	gi|124027125|ref|YP_001012445.1|	-	0.073	12.9	0.0	0.09	12.7	0.0	1.3	1	1	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
CBS	PF00571.23	gi|124027125|ref|YP_001012445.1|	-	0.12	12.1	0.0	25	4.7	0.0	2.5	2	0	0	2	2	2	0	CBS	domain
Antitoxin-MazE	PF04014.13	gi|124027126|ref|YP_001012446.1|	-	2.7e-05	23.7	1.2	4.1e-05	23.1	0.8	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
MraZ	PF02381.13	gi|124027126|ref|YP_001012446.1|	-	0.0023	17.6	0.0	0.0039	16.9	0.0	1.5	1	1	0	1	1	1	1	MraZ	protein
DUF4147	PF13660.1	gi|124027127|ref|YP_001012447.1|	-	1.7e-73	246.7	0.0	2.7e-73	246.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|124027127|ref|YP_001012447.1|	-	2.2e-31	108.1	0.2	2.2e-31	108.1	0.1	2.0	2	0	0	2	2	2	1	MOFRL	family
ABC_tran	PF00005.22	gi|124027128|ref|YP_001012448.1|	-	6.1e-31	107.5	0.0	7.4e-31	107.2	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027128|ref|YP_001012448.1|	-	1.4e-08	35.0	0.0	6.9e-05	22.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|124027128|ref|YP_001012448.1|	-	6.2e-05	22.4	0.1	0.00013	21.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|124027128|ref|YP_001012448.1|	-	0.00013	22.0	1.9	0.00047	20.2	1.4	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|124027128|ref|YP_001012448.1|	-	0.00018	21.1	0.4	0.41	10.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|124027128|ref|YP_001012448.1|	-	0.0002	21.7	0.0	0.00029	21.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027128|ref|YP_001012448.1|	-	0.00038	20.1	0.4	0.01	15.5	0.0	2.6	2	0	0	2	2	2	1	Part	of	AAA	domain
SMC_N	PF02463.14	gi|124027128|ref|YP_001012448.1|	-	0.00038	19.7	0.2	0.34	10.1	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
NTPase_1	PF03266.10	gi|124027128|ref|YP_001012448.1|	-	0.00062	19.5	0.0	0.13	11.9	0.0	2.2	2	0	0	2	2	2	1	NTPase
AAA_22	PF13401.1	gi|124027128|ref|YP_001012448.1|	-	0.00063	19.8	0.7	0.016	15.3	0.5	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|124027128|ref|YP_001012448.1|	-	0.0018	17.3	0.0	0.58	9.1	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.7	gi|124027128|ref|YP_001012448.1|	-	0.0022	17.6	0.0	0.0037	16.9	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
SbcCD_C	PF13558.1	gi|124027128|ref|YP_001012448.1|	-	0.0029	17.5	0.4	0.039	13.8	0.3	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
T2SE	PF00437.15	gi|124027128|ref|YP_001012448.1|	-	0.013	14.4	0.2	0.024	13.5	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_28	PF13521.1	gi|124027128|ref|YP_001012448.1|	-	0.016	15.1	0.0	0.031	14.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|124027128|ref|YP_001012448.1|	-	0.029	14.2	0.0	0.051	13.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|124027128|ref|YP_001012448.1|	-	0.031	13.6	1.5	0.084	12.2	1.1	2.0	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|124027128|ref|YP_001012448.1|	-	0.039	13.3	0.0	0.059	12.8	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Arch_ATPase	PF01637.13	gi|124027128|ref|YP_001012448.1|	-	0.046	13.4	0.0	0.05	13.3	0.0	1.4	1	1	0	1	1	1	0	Archaeal	ATPase
AAA_17	PF13207.1	gi|124027128|ref|YP_001012448.1|	-	0.048	14.4	0.9	0.082	13.7	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|124027128|ref|YP_001012448.1|	-	0.056	13.6	0.2	0.1	12.7	0.1	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MutS_V	PF00488.16	gi|124027128|ref|YP_001012448.1|	-	0.057	12.8	0.0	0.085	12.2	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
MobB	PF03205.9	gi|124027128|ref|YP_001012448.1|	-	0.08	12.6	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_11	PF13086.1	gi|124027128|ref|YP_001012448.1|	-	0.11	12.0	0.0	0.14	11.7	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|124027128|ref|YP_001012448.1|	-	0.11	11.8	0.3	0.55	9.6	0.1	1.9	2	1	0	2	2	2	0	AAA-like	domain
ATP-synt_ab	PF00006.20	gi|124027128|ref|YP_001012448.1|	-	0.16	11.4	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
TIP49	PF06068.8	gi|124027128|ref|YP_001012448.1|	-	0.16	10.6	0.0	0.23	10.1	0.0	1.2	1	0	0	1	1	1	0	TIP49	C-terminus
AAA_13	PF13166.1	gi|124027128|ref|YP_001012448.1|	-	0.22	9.9	0.0	0.33	9.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|124027128|ref|YP_001012448.1|	-	0.24	10.8	0.9	1.6	8.1	0.0	2.0	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
FtsX	PF02687.16	gi|124027129|ref|YP_001012449.1|	-	0.0042	16.8	2.6	0.0042	16.8	1.8	1.7	2	0	0	2	2	2	1	FtsX-like	permease	family
US22	PF02393.11	gi|124027131|ref|YP_001012450.1|	-	0.044	13.7	0.1	0.097	12.6	0.1	1.5	1	0	0	1	1	1	0	US22	like
MFS_1	PF07690.11	gi|124027132|ref|YP_001012452.1|	-	1.5e-05	23.8	47.9	1.5e-05	23.8	33.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
HD	PF01966.17	gi|124027133|ref|YP_001012453.1|	-	6.1e-10	39.1	0.4	2.2e-09	37.3	0.1	2.2	2	0	0	2	2	2	1	HD	domain
DUF4064	PF13273.1	gi|124027135|ref|YP_001012455.1|	-	0.11	12.6	0.1	0.11	12.6	0.0	3.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4064)
ABC_tran	PF00005.22	gi|124027136|ref|YP_001012456.1|	-	1.5e-32	112.7	0.0	2.3e-32	112.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027136|ref|YP_001012456.1|	-	1.1e-12	48.5	0.2	1.4e-07	31.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|124027136|ref|YP_001012456.1|	-	4.3e-06	26.2	0.3	9.8e-06	25.0	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027136|ref|YP_001012456.1|	-	1.6e-05	24.2	0.2	3.1e-05	23.4	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|124027136|ref|YP_001012456.1|	-	5.4e-05	22.5	0.0	0.0011	18.3	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|124027136|ref|YP_001012456.1|	-	0.00013	22.0	0.3	0.0004	20.4	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|124027136|ref|YP_001012456.1|	-	0.0013	18.9	0.1	0.0078	16.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
T2SE	PF00437.15	gi|124027136|ref|YP_001012456.1|	-	0.0022	16.9	0.1	0.0078	15.1	0.0	1.8	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_10	PF12846.2	gi|124027136|ref|YP_001012456.1|	-	0.0033	16.9	1.4	0.26	10.6	0.2	2.3	1	1	0	2	2	2	1	AAA-like	domain
AAA_17	PF13207.1	gi|124027136|ref|YP_001012456.1|	-	0.017	15.9	0.5	0.04	14.7	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|124027136|ref|YP_001012456.1|	-	0.023	13.7	0.0	0.038	13.0	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_23	PF13476.1	gi|124027136|ref|YP_001012456.1|	-	0.023	15.0	0.0	0.033	14.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|124027136|ref|YP_001012456.1|	-	0.032	13.4	0.0	0.049	12.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_33	PF13671.1	gi|124027136|ref|YP_001012456.1|	-	0.071	12.9	0.0	0.16	11.8	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
AAA_5	PF07728.9	gi|124027136|ref|YP_001012456.1|	-	0.076	12.7	0.1	0.21	11.3	0.1	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|124027136|ref|YP_001012456.1|	-	0.089	12.5	1.2	0.25	11.1	0.1	2.2	2	1	0	2	2	2	0	Part	of	AAA	domain
UPF0079	PF02367.12	gi|124027136|ref|YP_001012456.1|	-	0.094	12.3	0.3	0.19	11.3	0.2	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Mg_chelatase	PF01078.16	gi|124027136|ref|YP_001012456.1|	-	0.11	11.6	0.1	0.55	9.3	0.1	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|124027136|ref|YP_001012456.1|	-	0.15	11.6	0.1	0.27	10.8	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_14	PF13173.1	gi|124027136|ref|YP_001012456.1|	-	0.16	11.8	0.0	0.39	10.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|124027136|ref|YP_001012456.1|	-	0.17	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_15	PF13175.1	gi|124027136|ref|YP_001012456.1|	-	0.19	10.7	0.0	0.83	8.6	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
CbiQ	PF02361.11	gi|124027137|ref|YP_001012457.1|	-	6.5e-12	45.5	13.5	5.3e-11	42.5	9.6	1.9	1	1	0	1	1	1	1	Cobalt	transport	protein
DUF497	PF04365.8	gi|124027137|ref|YP_001012457.1|	-	0.053	13.4	0.1	0.12	12.2	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF497)
PDGLE	PF13190.1	gi|124027138|ref|YP_001012458.1|	-	3.4e-11	42.6	2.0	4.4e-11	42.3	1.4	1.1	1	0	0	1	1	1	1	PDGLE	domain
CbiM	PF01891.11	gi|124027139|ref|YP_001012459.1|	-	3.5e-68	229.2	16.7	3.9e-68	229.0	11.5	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
DUF3816	PF12822.2	gi|124027139|ref|YP_001012459.1|	-	0.003	17.4	22.3	0.044	13.6	15.9	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3816)
Ldr_toxin	PF13940.1	gi|124027139|ref|YP_001012459.1|	-	0.75	9.6	0.1	0.75	9.6	0.1	3.8	4	0	0	4	4	4	0	Toxin	Ldr,	type	I	toxin-antitoxin	system
MtrB	PF05440.7	gi|124027139|ref|YP_001012459.1|	-	4.6	7.3	6.4	1.8	8.6	0.2	2.9	3	0	0	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
Prefoldin_2	PF01920.15	gi|124027140|ref|YP_001012460.1|	-	0.018	14.8	2.4	0.029	14.1	1.7	1.3	1	0	0	1	1	1	0	Prefoldin	subunit
Prefoldin	PF02996.12	gi|124027140|ref|YP_001012460.1|	-	0.04	13.5	0.9	0.26	10.9	0.5	2.0	2	0	0	2	2	2	0	Prefoldin	subunit
Sugarporin_N	PF11471.3	gi|124027140|ref|YP_001012460.1|	-	0.047	13.3	3.1	0.13	11.9	2.1	1.7	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
Seryl_tRNA_N	PF02403.17	gi|124027140|ref|YP_001012460.1|	-	0.055	13.4	0.6	0.085	12.8	0.4	1.2	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Imm3	PF14425.1	gi|124027140|ref|YP_001012460.1|	-	0.061	13.2	0.4	0.15	12.0	0.3	1.6	1	0	0	1	1	1	0	Immunity	protein	Imm3
AAA_32	PF13654.1	gi|124027140|ref|YP_001012460.1|	-	0.11	11.0	0.5	0.16	10.6	0.4	1.1	1	0	0	1	1	1	0	AAA	domain
DUF1664	PF07889.7	gi|124027140|ref|YP_001012460.1|	-	0.16	11.8	0.3	0.31	10.8	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
COG2	PF06148.6	gi|124027140|ref|YP_001012460.1|	-	0.17	11.7	0.6	0.29	10.9	0.4	1.2	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
SlyX	PF04102.7	gi|124027140|ref|YP_001012460.1|	-	0.24	11.7	3.9	0.67	10.3	2.7	1.7	1	0	0	1	1	1	0	SlyX
IncA	PF04156.9	gi|124027140|ref|YP_001012460.1|	-	0.37	10.3	5.4	0.15	11.6	0.5	2.0	2	0	0	2	2	2	0	IncA	protein
Proteasome_A_N	PF10584.4	gi|124027142|ref|YP_001012462.1|	-	0.1	11.9	0.0	0.22	10.8	0.0	1.6	1	0	0	1	1	1	0	Proteasome	subunit	A	N-terminal	signature
zf-ribbon_3	PF13248.1	gi|124027143|ref|YP_001012463.1|	-	5.6e-12	44.4	10.7	3.8e-06	25.9	2.6	3.3	3	0	0	3	3	3	3	zinc-ribbon	domain
DZR	PF12773.2	gi|124027143|ref|YP_001012463.1|	-	1.9e-09	37.1	7.0	2.2e-06	27.3	3.3	2.2	2	0	0	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|124027143|ref|YP_001012463.1|	-	6.6e-07	28.6	16.4	0.00042	19.7	1.4	3.2	1	1	2	3	3	3	3	zinc-ribbon	domain
PolC_DP2	PF03833.8	gi|124027143|ref|YP_001012463.1|	-	1.3e-05	23.0	0.9	1.7e-05	22.7	0.7	1.1	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
Zn-ribbon_8	PF09723.5	gi|124027143|ref|YP_001012463.1|	-	5.2e-05	23.1	12.4	0.39	10.7	3.1	4.0	2	1	1	3	3	3	2	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124027143|ref|YP_001012463.1|	-	0.00024	20.6	4.8	0.95	9.1	0.0	3.9	4	0	0	4	4	4	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124027143|ref|YP_001012463.1|	-	0.00095	18.8	5.9	1.5	8.5	0.0	3.9	4	0	0	4	4	4	1	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|124027143|ref|YP_001012463.1|	-	0.0015	18.0	6.5	5	6.7	0.3	4.0	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
UPF0547	PF10571.4	gi|124027143|ref|YP_001012463.1|	-	0.0024	17.5	12.3	0.42	10.3	0.0	3.3	2	1	1	3	3	3	1	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.7	gi|124027143|ref|YP_001012463.1|	-	0.0026	17.0	13.1	1.6	8.1	0.0	3.9	2	1	0	3	3	3	1	TFIIB	zinc-binding
zinc-ribbons_6	PF07191.7	gi|124027143|ref|YP_001012463.1|	-	0.006	16.3	5.7	0.15	11.8	4.0	2.2	1	1	0	1	1	1	1	zinc-ribbons
zf-IS66	PF13005.2	gi|124027143|ref|YP_001012463.1|	-	0.048	13.6	14.3	0.91	9.5	0.0	4.2	3	1	0	4	4	4	0	zinc-finger	binding	domain	of	transposase	IS66
DUF1610	PF07754.6	gi|124027143|ref|YP_001012463.1|	-	0.057	13.5	19.7	2.1	8.5	0.4	4.3	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1610)
DNA_ligase_ZBD	PF03119.11	gi|124027143|ref|YP_001012463.1|	-	0.058	13.1	11.0	7.8	6.2	0.1	4.2	4	0	0	4	4	4	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Nop10p	PF04135.7	gi|124027143|ref|YP_001012463.1|	-	0.11	12.2	6.9	1.2	8.9	0.3	2.4	1	1	1	2	2	2	0	Nucleolar	RNA-binding	protein,	Nop10p	family
Cys_rich_CPXG	PF14255.1	gi|124027143|ref|YP_001012463.1|	-	0.12	12.2	10.1	2.8	7.8	0.0	4.1	3	1	0	3	3	3	0	Cysteine-rich	CPXCG
DUF2321	PF10083.4	gi|124027143|ref|YP_001012463.1|	-	0.15	11.5	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Nudix_N_2	PF14803.1	gi|124027143|ref|YP_001012463.1|	-	0.17	11.5	8.7	9.7	5.9	0.0	4.1	4	0	0	4	4	4	0	Nudix	N-terminal
OrfB_Zn_ribbon	PF07282.6	gi|124027143|ref|YP_001012463.1|	-	0.2	11.3	11.3	13	5.5	2.0	3.1	1	1	2	3	3	3	0	Putative	transposase	DNA-binding	domain
zf-tcix	PF14952.1	gi|124027143|ref|YP_001012463.1|	-	0.22	10.8	20.8	2.4	7.5	0.1	3.9	2	1	2	4	4	4	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Prok-RING_1	PF14446.1	gi|124027143|ref|YP_001012463.1|	-	0.23	11.2	10.0	0.27	11.0	1.3	3.0	1	1	2	3	3	3	0	Prokaryotic	RING	finger	family	1
FYDLN_acid	PF09538.5	gi|124027143|ref|YP_001012463.1|	-	0.31	11.6	8.2	39	4.8	2.7	3.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
TerY-C	PF15616.1	gi|124027143|ref|YP_001012463.1|	-	0.32	10.9	10.4	5.1	7.0	7.2	2.3	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
zf-NADH-PPase	PF09297.6	gi|124027143|ref|YP_001012463.1|	-	0.38	10.2	14.4	14	5.3	0.1	5.0	5	0	0	5	5	5	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-B_box	PF00643.19	gi|124027143|ref|YP_001012463.1|	-	0.45	10.4	2.5	11	6.0	0.1	2.2	2	0	0	2	2	2	0	B-box	zinc	finger
E7	PF00527.13	gi|124027143|ref|YP_001012463.1|	-	0.46	10.6	4.3	0.42	10.8	0.2	2.5	1	1	1	2	2	2	0	E7	protein,	Early	protein
CpXC	PF14353.1	gi|124027143|ref|YP_001012463.1|	-	0.51	10.3	9.7	13	5.7	0.1	4.0	1	1	3	4	4	4	0	CpXC	protein
Zn_Tnp_IS1595	PF12760.2	gi|124027143|ref|YP_001012463.1|	-	0.59	9.9	15.9	2.7	7.8	1.8	4.0	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|124027143|ref|YP_001012463.1|	-	0.77	10.2	10.4	18	5.9	0.3	4.2	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
zf-AN1	PF01428.11	gi|124027143|ref|YP_001012463.1|	-	1.2	9.0	8.1	0.37	10.6	0.3	2.6	1	1	2	3	3	3	0	AN1-like	Zinc	finger
Auto_anti-p27	PF06677.7	gi|124027143|ref|YP_001012463.1|	-	1.5	8.6	13.9	4.2	7.2	2.0	3.5	2	1	1	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Ogr_Delta	PF04606.7	gi|124027143|ref|YP_001012463.1|	-	1.5	8.4	10.7	23	4.7	0.0	4.1	3	1	1	4	4	4	0	Ogr/Delta-like	zinc	finger
zf-LITAF-like	PF10601.4	gi|124027143|ref|YP_001012463.1|	-	1.7	8.5	9.7	11	5.9	0.1	3.4	1	1	2	3	3	3	0	LITAF-like	zinc	ribbon	domain
DUF1272	PF06906.6	gi|124027143|ref|YP_001012463.1|	-	2	8.2	12.0	23	4.9	8.3	2.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
DUF164	PF02591.10	gi|124027143|ref|YP_001012463.1|	-	2.2	8.1	11.4	21	5.0	0.2	4.1	4	0	0	4	4	4	0	Putative	zinc	ribbon	domain
Ribosomal_L32p	PF01783.18	gi|124027143|ref|YP_001012463.1|	-	2.3	8.4	9.0	80	3.5	6.2	2.5	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
zf-TFIIB	PF13453.1	gi|124027143|ref|YP_001012463.1|	-	2.8	7.2	12.3	15	4.8	0.1	3.6	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
zf-C3HC4_3	PF13920.1	gi|124027143|ref|YP_001012463.1|	-	3.1	7.5	11.9	8.6	6.1	4.0	3.0	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
FdhE	PF04216.7	gi|124027143|ref|YP_001012463.1|	-	3.2	7.3	6.8	61	3.1	0.6	2.7	2	1	1	3	3	3	0	Protein	involved	in	formate	dehydrogenase	formation
HypA	PF01155.14	gi|124027143|ref|YP_001012463.1|	-	3.4	7.3	7.1	1.2e+02	2.4	5.1	2.8	1	1	2	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
RNA_POL_M_15KD	PF02150.11	gi|124027143|ref|YP_001012463.1|	-	3.7	7.3	7.3	3	7.6	0.5	3.3	3	1	1	4	4	3	0	RNA	polymerases	M/15	Kd	subunit
DNA_RNApol_7kD	PF03604.8	gi|124027143|ref|YP_001012463.1|	-	5.3	6.5	9.6	6.2	6.3	0.0	3.4	3	1	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-Mss51	PF13824.1	gi|124027143|ref|YP_001012463.1|	-	6.8	6.6	10.9	3.3	7.6	0.4	2.8	2	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Sgf11	PF08209.6	gi|124027143|ref|YP_001012463.1|	-	8	5.8	12.1	3.5	7.0	0.0	3.8	4	0	0	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
DUF329	PF03884.9	gi|124027143|ref|YP_001012463.1|	-	8.6	6.0	11.6	11	5.6	1.2	3.3	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF329)
zf-H2C2_2	PF13465.1	gi|124027143|ref|YP_001012463.1|	-	8.9	6.8	15.7	11	6.5	0.1	4.0	3	1	1	4	4	4	0	Zinc-finger	double	domain
zf-HIT	PF04438.11	gi|124027143|ref|YP_001012463.1|	-	9	6.0	19.9	16	5.2	4.5	3.2	1	1	2	3	3	3	0	HIT	zinc	finger
Kdo	PF06293.9	gi|124027144|ref|YP_001012464.1|	-	0.062	12.3	0.0	0.18	10.8	0.0	1.4	1	1	1	2	2	2	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.20	gi|124027144|ref|YP_001012464.1|	-	0.13	11.4	0.0	0.28	10.2	0.0	1.6	1	1	0	1	1	1	0	Protein	kinase	domain
VWA	PF00092.23	gi|124027145|ref|YP_001012465.1|	-	5.7e-15	55.4	0.0	1e-14	54.6	0.0	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.1	gi|124027145|ref|YP_001012465.1|	-	3.2e-11	43.6	0.0	4.7e-11	43.1	0.0	1.1	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.4	gi|124027145|ref|YP_001012465.1|	-	0.017	14.9	0.0	0.027	14.3	0.0	1.3	1	0	0	1	1	1	0	vWA	found	in	TerF	C	terminus
Copine	PF07002.11	gi|124027145|ref|YP_001012465.1|	-	0.043	13.5	0.0	0.083	12.6	0.0	1.6	2	0	0	2	2	2	0	Copine
Ferritin	PF00210.19	gi|124027145|ref|YP_001012465.1|	-	0.13	11.9	0.1	1.6	8.4	0.1	2.2	2	0	0	2	2	2	0	Ferritin-like	domain
Polyketide_cyc2	PF10604.4	gi|124027146|ref|YP_001012466.1|	-	0.0049	17.0	0.0	0.01	16.0	0.0	1.5	2	0	0	2	2	2	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
PP2C_2	PF13672.1	gi|124027147|ref|YP_001012467.1|	-	6.6e-08	32.2	0.0	1.7e-07	30.8	0.0	1.7	1	1	0	1	1	1	1	Protein	phosphatase	2C
NYD-SP12_N	PF15015.1	gi|124027147|ref|YP_001012467.1|	-	0.028	12.6	0.2	0.039	12.1	0.2	1.1	1	0	0	1	1	1	0	Spermatogenesis-associated,	N-terminal
Lactamase_B	PF00753.22	gi|124027149|ref|YP_001012469.1|	-	7.5e-09	35.5	0.0	1.8e-08	34.2	0.0	1.7	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Thi4	PF01946.12	gi|124027150|ref|YP_001012470.1|	-	1.9e-60	203.8	0.7	2.2e-60	203.5	0.5	1.0	1	0	0	1	1	1	1	Thi4	family
FAD_oxidored	PF12831.2	gi|124027150|ref|YP_001012470.1|	-	6.8e-10	38.5	2.0	1.1e-09	37.8	1.4	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|124027150|ref|YP_001012470.1|	-	5.5e-09	35.4	8.7	1e-05	24.6	3.2	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|124027150|ref|YP_001012470.1|	-	2.4e-08	33.2	6.7	2.1e-05	23.5	2.6	3.1	2	1	0	3	3	3	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|124027150|ref|YP_001012470.1|	-	8.7e-08	32.0	1.0	2.3e-07	30.7	0.7	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|124027150|ref|YP_001012470.1|	-	3.4e-06	26.3	3.3	5.3e-06	25.7	2.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|124027150|ref|YP_001012470.1|	-	4.6e-05	23.3	0.2	8e-05	22.6	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|124027150|ref|YP_001012470.1|	-	0.00013	20.5	1.5	0.00024	19.7	1.1	1.4	1	0	0	1	1	1	1	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|124027150|ref|YP_001012470.1|	-	0.00061	18.8	1.3	0.0019	17.2	0.6	1.8	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Amino_oxidase	PF01593.19	gi|124027150|ref|YP_001012470.1|	-	0.00066	18.8	1.2	0.0042	16.2	0.6	1.9	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027150|ref|YP_001012470.1|	-	0.0013	18.8	2.5	0.0033	17.5	1.5	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|124027150|ref|YP_001012470.1|	-	0.0025	16.7	2.9	0.0037	16.1	2.0	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
UDPG_MGDP_dh_N	PF03721.9	gi|124027150|ref|YP_001012470.1|	-	0.044	13.1	0.1	0.076	12.3	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
HEM4	PF02602.10	gi|124027150|ref|YP_001012470.1|	-	0.075	12.2	0.1	0.13	11.5	0.1	1.4	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
ELFV_dehydrog	PF00208.16	gi|124027150|ref|YP_001012470.1|	-	0.088	12.3	0.1	0.14	11.6	0.1	1.3	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Pyr_redox	PF00070.22	gi|124027150|ref|YP_001012470.1|	-	0.1	13.0	2.0	0.26	11.6	1.0	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|124027150|ref|YP_001012470.1|	-	0.14	10.7	2.5	0.25	9.9	1.2	1.7	2	0	0	2	2	2	0	Tryptophan	halogenase
3HCDH_N	PF02737.13	gi|124027150|ref|YP_001012470.1|	-	0.26	10.9	1.0	0.52	9.9	0.7	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_C	PF02080.16	gi|124027151|ref|YP_001012471.1|	-	7.9e-15	54.2	0.0	2e-14	52.9	0.0	1.7	1	0	0	1	1	1	1	TrkA-C	domain
HTH_20	PF12840.2	gi|124027151|ref|YP_001012471.1|	-	0.027	14.2	0.0	0.14	11.9	0.0	2.2	2	1	0	2	2	2	0	Helix-turn-helix	domain
Radical_SAM	PF04055.16	gi|124027153|ref|YP_001012473.1|	-	5.6e-25	88.4	0.1	7.6e-25	87.9	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|124027153|ref|YP_001012473.1|	-	1.7e-07	31.2	0.0	3.4e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124027153|ref|YP_001012473.1|	-	7.5e-06	26.1	0.0	1.5e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Metallophos_2	PF12850.2	gi|124027154|ref|YP_001012474.1|	-	1e-18	67.6	0.0	1.2e-18	67.4	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|124027154|ref|YP_001012474.1|	-	8.9e-12	44.7	0.8	1.9e-09	37.0	0.0	3.0	2	1	1	3	3	3	2	Metallophosphoesterase,	calcineurin	superfamily
Metallophos	PF00149.23	gi|124027154|ref|YP_001012474.1|	-	5.9e-06	25.8	2.9	0.00026	20.4	2.0	2.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
RseC_MucC	PF04246.7	gi|124027155|ref|YP_001012475.1|	-	0.0072	15.8	0.3	0.0072	15.8	0.2	2.0	1	1	1	2	2	2	1	Positive	regulator	of	sigma(E),	RseC/MucC
Sensor	PF13796.1	gi|124027155|ref|YP_001012475.1|	-	0.016	14.8	10.1	0.061	12.9	7.0	1.8	1	1	0	1	1	1	0	Putative	sensor
DUF1049	PF06305.6	gi|124027155|ref|YP_001012475.1|	-	0.087	12.3	9.5	0.79	9.2	1.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
DUF2754	PF10953.3	gi|124027155|ref|YP_001012475.1|	-	0.34	11.0	2.1	0.66	10.0	0.1	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2754)
Transgly_assoc	PF04226.8	gi|124027155|ref|YP_001012475.1|	-	0.52	10.4	8.6	0.43	10.6	1.3	2.8	1	1	2	3	3	3	0	Transglycosylase	associated	protein
DUF2062	PF09835.4	gi|124027155|ref|YP_001012475.1|	-	0.7	9.4	4.9	2	8.0	0.0	2.8	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
BatA	PF07584.6	gi|124027155|ref|YP_001012475.1|	-	1.4	9.1	7.8	8.7	6.6	2.6	2.4	2	0	0	2	2	2	0	Aerotolerance	regulator	N-terminal
ABC_tran	PF00005.22	gi|124027156|ref|YP_001012476.1|	-	6.8e-24	84.7	0.0	1.1e-23	83.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027156|ref|YP_001012476.1|	-	4.6e-10	39.9	0.0	0.00043	20.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.2	gi|124027156|ref|YP_001012476.1|	-	0.00018	21.0	0.1	0.17	11.3	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
SMC_N	PF02463.14	gi|124027156|ref|YP_001012476.1|	-	0.00032	20.0	0.1	0.7	9.0	0.2	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|124027156|ref|YP_001012476.1|	-	0.00088	19.6	0.0	0.0014	19.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027156|ref|YP_001012476.1|	-	0.0038	16.7	0.3	0.0079	15.6	0.1	1.6	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
MukB	PF04310.7	gi|124027156|ref|YP_001012476.1|	-	0.015	14.6	0.0	0.028	13.7	0.0	1.4	1	0	0	1	1	1	0	MukB	N-terminal
AAA_30	PF13604.1	gi|124027156|ref|YP_001012476.1|	-	0.019	14.5	0.9	0.047	13.2	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|124027156|ref|YP_001012476.1|	-	0.034	14.0	0.1	0.37	10.6	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|124027156|ref|YP_001012476.1|	-	0.05	13.3	1.3	0.12	12.0	0.1	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
RHH_1	PF01402.16	gi|124027156|ref|YP_001012476.1|	-	1.1	9.2	5.4	2.2	8.2	0.9	3.0	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
His_Phos_1	PF00300.17	gi|124027157|ref|YP_001012477.1|	-	1.4e-12	48.0	0.0	3.3e-12	46.7	0.0	1.6	1	1	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
DHO_dh	PF01180.16	gi|124027158|ref|YP_001012478.1|	-	1.9e-52	178.0	0.1	2.2e-52	177.8	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
Dus	PF01207.12	gi|124027158|ref|YP_001012478.1|	-	1.5e-10	40.4	0.5	9e-08	31.3	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NMO	PF03060.10	gi|124027158|ref|YP_001012478.1|	-	4.9e-06	25.9	10.6	0.00017	20.8	1.2	2.2	2	0	0	2	2	2	2	Nitronate	monooxygenase
His_biosynth	PF00977.16	gi|124027158|ref|YP_001012478.1|	-	0.00079	18.7	1.5	0.0052	16.0	0.1	2.7	4	0	0	4	4	4	1	Histidine	biosynthesis	protein
IMPDH	PF00478.20	gi|124027158|ref|YP_001012478.1|	-	0.0023	16.9	5.6	0.24	10.2	0.1	3.7	3	2	2	5	5	5	1	IMP	dehydrogenase	/	GMP	reductase	domain
G3P_antiterm	PF04309.7	gi|124027158|ref|YP_001012478.1|	-	0.024	13.6	1.3	2.5	7.1	0.0	2.8	2	1	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
PEP_mutase	PF13714.1	gi|124027158|ref|YP_001012478.1|	-	0.05	12.8	3.3	0.63	9.2	1.1	3.0	3	1	1	4	4	4	0	Phosphoenolpyruvate	phosphomutase
HCV_core	PF01542.13	gi|124027158|ref|YP_001012478.1|	-	1.1	9.6	4.1	0.64	10.4	0.3	2.4	2	1	1	3	3	3	0	Hepatitis	C	virus	core	protein
CYTH	PF01928.16	gi|124027159|ref|YP_001012479.1|	-	2.1e-39	135.1	3.7	2.3e-39	134.9	2.5	1.0	1	0	0	1	1	1	1	CYTH	domain
YcfA	PF07927.7	gi|124027159|ref|YP_001012479.1|	-	0.09	12.7	0.0	0.33	10.9	0.0	2.0	2	0	0	2	2	2	0	YcfA-like	protein
Tic20	PF09685.5	gi|124027160|ref|YP_001012480.1|	-	0.28	11.1	3.5	3.6	7.6	0.1	2.1	2	0	0	2	2	2	0	Tic20-like	protein
DUF4381	PF14316.1	gi|124027160|ref|YP_001012480.1|	-	0.46	10.5	5.8	1.7	8.7	0.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
DUF2062	PF09835.4	gi|124027160|ref|YP_001012480.1|	-	1.1	8.9	5.3	0.16	11.5	0.3	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
Lamp	PF01299.12	gi|124027160|ref|YP_001012480.1|	-	5.7	5.9	8.0	0.08	12.0	0.7	1.3	2	0	0	2	2	2	0	Lysosome-associated	membrane	glycoprotein	(Lamp)
OppC_N	PF12911.2	gi|124027160|ref|YP_001012480.1|	-	6.8	6.1	8.2	3.2	7.1	0.8	2.2	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
MttA_Hcf106	PF02416.11	gi|124027161|ref|YP_001012481.1|	-	9.3e-16	56.6	0.1	1.6e-15	55.8	0.0	1.4	1	0	0	1	1	1	1	mttA/Hcf106	family
RHH_1	PF01402.16	gi|124027161|ref|YP_001012481.1|	-	0.0041	16.9	2.2	0.36	10.8	0.9	2.9	1	1	1	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Rho_N	PF07498.7	gi|124027161|ref|YP_001012481.1|	-	0.038	13.7	0.2	0.1	12.3	0.2	1.7	2	0	0	2	2	2	0	Rho	termination	factor,	N-terminal	domain
ArsA_ATPase	PF02374.10	gi|124027162|ref|YP_001012482.1|	-	3.6e-23	82.0	0.0	4.4e-23	81.7	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|124027162|ref|YP_001012482.1|	-	1.4e-08	34.3	0.0	2.7e-08	33.4	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|124027162|ref|YP_001012482.1|	-	0.0014	17.7	0.2	0.004	16.2	0.1	1.6	2	0	0	2	2	2	1	ATPase	MipZ
AAA_31	PF13614.1	gi|124027162|ref|YP_001012482.1|	-	0.0024	17.8	0.0	0.0054	16.6	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027162|ref|YP_001012482.1|	-	0.006	16.3	2.5	0.017	14.8	0.9	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|124027162|ref|YP_001012482.1|	-	0.0093	15.3	1.4	0.016	14.5	0.0	2.1	3	0	0	3	3	3	1	AAA	domain
AAA_17	PF13207.1	gi|124027162|ref|YP_001012482.1|	-	0.012	16.3	0.7	0.043	14.6	0.3	2.2	2	1	0	2	2	1	0	AAA	domain
ParA	PF10609.4	gi|124027162|ref|YP_001012482.1|	-	0.033	14.0	0.0	0.068	13.0	0.0	1.5	1	0	0	1	1	1	0	ParA/MinD	ATPase	like
MobB	PF03205.9	gi|124027162|ref|YP_001012482.1|	-	0.036	13.7	0.0	0.056	13.1	0.0	1.3	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Fer4_NifH	PF00142.13	gi|124027162|ref|YP_001012482.1|	-	0.071	12.2	0.1	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_30	PF13604.1	gi|124027162|ref|YP_001012482.1|	-	0.09	12.3	0.5	0.17	11.4	0.3	1.3	1	0	0	1	1	1	0	AAA	domain
YhjQ	PF06564.7	gi|124027162|ref|YP_001012482.1|	-	0.11	11.8	0.1	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	YhjQ	protein
LpxK	PF02606.9	gi|124027162|ref|YP_001012482.1|	-	0.15	10.9	0.1	0.23	10.3	0.1	1.2	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
SRP54	PF00448.17	gi|124027162|ref|YP_001012482.1|	-	0.15	11.4	0.3	0.5	9.7	0.1	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
HhH-GPD	PF00730.20	gi|124027163|ref|YP_001012483.1|	-	5.8e-21	74.8	0.0	7.6e-21	74.4	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
EndIII_4Fe-2S	PF10576.4	gi|124027163|ref|YP_001012483.1|	-	1.9e-05	24.6	8.2	4e-05	23.6	5.7	1.6	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.1	gi|124027163|ref|YP_001012483.1|	-	0.00016	21.7	0.3	0.058	13.5	0.0	2.4	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|124027163|ref|YP_001012483.1|	-	0.0002	20.8	0.0	0.00065	19.2	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_8	PF14716.1	gi|124027163|ref|YP_001012483.1|	-	0.051	13.7	0.2	0.23	11.6	0.1	2.2	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
Transposase_20	PF02371.11	gi|124027163|ref|YP_001012483.1|	-	0.13	12.4	0.0	0.78	9.8	0.0	2.3	2	0	0	2	2	2	0	Transposase	IS116/IS110/IS902	family
Ets	PF00178.17	gi|124027163|ref|YP_001012483.1|	-	0.14	12.3	0.0	0.38	10.9	0.0	1.8	2	0	0	2	2	2	0	Ets-domain
MFS_1	PF07690.11	gi|124027165|ref|YP_001012485.1|	-	1.2e-42	145.8	39.0	3.6e-27	95.0	11.4	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|124027165|ref|YP_001012485.1|	-	2.8e-10	39.3	4.6	2.8e-10	39.3	3.2	2.8	1	1	1	3	3	3	1	Sugar	(and	other)	transporter
MFS_1_like	PF12832.2	gi|124027165|ref|YP_001012485.1|	-	0.056	13.2	7.9	0.14	11.9	0.1	4.3	4	0	0	4	4	4	0	MFS_1	like	family
Pam17	PF08566.5	gi|124027165|ref|YP_001012485.1|	-	0.43	10.2	1.7	12	5.5	0.0	2.8	3	0	0	3	3	3	0	Mitochondrial	import	protein	Pam17
AA_kinase	PF00696.23	gi|124027166|ref|YP_001012486.1|	-	3.4e-35	121.7	0.0	4.2e-35	121.4	0.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
SIS_2	PF13580.1	gi|124027166|ref|YP_001012486.1|	-	0.036	13.7	0.0	0.16	11.6	0.0	2.0	2	0	0	2	2	2	0	SIS	domain
Tropomyosin_1	PF12718.2	gi|124027167|ref|YP_001012487.1|	-	0.02	14.7	1.4	0.026	14.3	1.0	1.1	1	0	0	1	1	1	0	Tropomyosin	like
Metallophos_2	PF12850.2	gi|124027168|ref|YP_001012488.1|	-	3.5e-10	39.9	0.0	7.5e-10	38.8	0.0	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|124027168|ref|YP_001012488.1|	-	9.4e-08	31.6	0.2	4e-06	26.3	0.1	2.2	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
eRF1_1	PF03463.10	gi|124027169|ref|YP_001012489.1|	-	0.14	11.7	0.0	0.23	11.0	0.0	1.3	1	0	0	1	1	1	0	eRF1	domain	1
Methyltransf_18	PF12847.2	gi|124027170|ref|YP_001012490.1|	-	4.3e-08	33.7	0.5	1.4e-07	32.1	0.1	2.0	2	1	1	3	3	3	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124027170|ref|YP_001012490.1|	-	5.7e-07	29.5	0.1	7.7e-07	29.1	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.8	gi|124027170|ref|YP_001012490.1|	-	6.7e-06	25.5	0.0	1.4e-05	24.5	0.0	1.8	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
PrmA	PF06325.8	gi|124027170|ref|YP_001012490.1|	-	2.3e-05	23.6	0.0	3.1e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|124027170|ref|YP_001012490.1|	-	2.6e-05	23.8	0.0	8.9e-05	22.1	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|124027170|ref|YP_001012490.1|	-	0.0015	17.5	0.0	0.002	17.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.1	gi|124027170|ref|YP_001012490.1|	-	0.0035	17.6	0.0	0.0053	17.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|124027170|ref|YP_001012490.1|	-	0.017	14.1	0.0	0.026	13.5	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
MTS	PF05175.9	gi|124027170|ref|YP_001012490.1|	-	0.058	12.7	0.1	0.08	12.3	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_11	PF08241.7	gi|124027170|ref|YP_001012490.1|	-	0.09	13.2	0.0	0.21	12.1	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
Spermine_synth	PF01564.12	gi|124027170|ref|YP_001012490.1|	-	0.15	10.9	0.1	0.2	10.5	0.1	1.1	1	0	0	1	1	1	0	Spermine/spermidine	synthase
Methyltransf_15	PF09445.5	gi|124027170|ref|YP_001012490.1|	-	0.15	11.5	0.0	0.17	11.4	0.0	1.1	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Radical_SAM	PF04055.16	gi|124027171|ref|YP_001012491.1|	-	3.7e-20	72.7	0.0	6.7e-20	71.9	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
TroA	PF01297.12	gi|124027171|ref|YP_001012491.1|	-	0.058	12.6	0.0	0.089	12.0	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	solute	binding	protein	family
DUF4129	PF13559.1	gi|124027171|ref|YP_001012491.1|	-	0.2	11.6	0.9	26	4.8	0.0	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4129)
Lactamase_B	PF00753.22	gi|124027172|ref|YP_001012492.1|	-	6.6e-11	42.2	6.8	1.1e-09	38.1	4.7	2.2	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|124027172|ref|YP_001012492.1|	-	0.0007	19.1	0.0	0.0009	18.8	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
GLTT	PF01744.15	gi|124027172|ref|YP_001012492.1|	-	0.16	11.4	2.4	0.31	10.4	1.6	1.5	1	0	0	1	1	1	0	GLTT	repeat	(6	copies)
Lactamase_B	PF00753.22	gi|124027173|ref|YP_001012493.1|	-	1.8e-11	44.0	1.4	2.5e-11	43.5	0.4	1.8	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|124027173|ref|YP_001012493.1|	-	2.9e-06	26.9	0.0	5.3e-06	26.1	0.0	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
AAA_21	PF13304.1	gi|124027174|ref|YP_001012494.1|	-	0.00095	19.2	0.0	0.0011	18.9	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|124027174|ref|YP_001012494.1|	-	0.01	16.1	0.0	0.015	15.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
SbcCD_C	PF13558.1	gi|124027174|ref|YP_001012494.1|	-	0.078	12.9	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DUF486	PF04342.7	gi|124027175|ref|YP_001012495.1|	-	3.2	7.8	7.6	0.51	10.4	2.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF486
DUF4129	PF13559.1	gi|124027177|ref|YP_001012497.1|	-	3.1e-06	27.0	10.3	3.1e-06	27.0	7.2	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
DAP10	PF07213.6	gi|124027177|ref|YP_001012497.1|	-	0.085	12.6	0.3	0.14	11.9	0.2	1.4	1	0	0	1	1	1	0	DAP10	membrane	protein
DUF711	PF05167.7	gi|124027178|ref|YP_001012498.1|	-	5.2e-86	288.8	0.0	6.1e-86	288.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
MatE	PF01554.13	gi|124027179|ref|YP_001012499.1|	-	3e-49	166.7	34.1	7.6e-27	93.9	5.7	2.6	3	0	0	3	3	3	2	MatE
Polysacc_synt_C	PF14667.1	gi|124027179|ref|YP_001012499.1|	-	3.1e-11	43.2	12.7	3.1e-11	43.2	8.8	3.7	3	1	1	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
MVIN	PF03023.9	gi|124027179|ref|YP_001012499.1|	-	2.3e-07	29.5	9.7	2.3e-07	29.5	6.7	2.5	1	1	0	2	2	2	1	MviN-like	protein
DUF371	PF04027.8	gi|124027180|ref|YP_001012500.1|	-	9.3e-14	51.2	0.0	3.3e-13	49.4	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
HSBP1	PF06825.7	gi|124027182|ref|YP_001012502.1|	-	0.0022	17.5	0.5	0.69	9.5	0.1	2.3	2	0	0	2	2	2	1	Heat	shock	factor	binding	protein	1
NPV_P10	PF05531.7	gi|124027182|ref|YP_001012502.1|	-	0.0049	17.0	1.2	0.008	16.4	0.9	1.7	1	1	0	1	1	1	1	Nucleopolyhedrovirus	P10	protein
Mer2	PF09074.5	gi|124027182|ref|YP_001012502.1|	-	0.0059	16.5	4.3	0.007	16.3	3.0	1.0	1	0	0	1	1	1	1	Mer2
PhaP_Bmeg	PF09602.5	gi|124027182|ref|YP_001012502.1|	-	0.025	14.4	4.2	0.029	14.1	2.9	1.1	1	0	0	1	1	1	0	Polyhydroxyalkanoic	acid	inclusion	protein	(PhaP_Bmeg)
Exo70	PF03081.10	gi|124027182|ref|YP_001012502.1|	-	0.04	12.7	2.1	0.046	12.4	1.1	1.3	1	1	0	1	1	1	0	Exo70	exocyst	complex	subunit
Apolipoprotein	PF01442.13	gi|124027182|ref|YP_001012502.1|	-	0.05	13.1	19.8	0.071	12.6	13.7	1.2	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Baculo_PEP_C	PF04513.7	gi|124027182|ref|YP_001012502.1|	-	0.051	13.4	3.6	0.25	11.1	2.5	1.9	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF3220	PF11516.3	gi|124027182|ref|YP_001012502.1|	-	0.061	13.2	1.2	0.77	9.7	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3120)
RasGAP	PF00616.14	gi|124027182|ref|YP_001012502.1|	-	0.068	12.8	0.1	0.13	11.8	0.0	1.4	1	1	0	1	1	1	0	GTPase-activator	protein	for	Ras-like	GTPase
Prominin	PF05478.6	gi|124027182|ref|YP_001012502.1|	-	0.081	10.4	2.2	0.1	10.1	1.5	1.1	1	0	0	1	1	1	0	Prominin
Exonuc_VII_L	PF02601.10	gi|124027182|ref|YP_001012502.1|	-	0.26	10.4	8.5	0.3	10.2	5.9	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
DUF3510	PF12022.3	gi|124027182|ref|YP_001012502.1|	-	0.29	11.2	1.6	0.73	9.9	0.1	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3510)
Orbi_NS1	PF01718.11	gi|124027182|ref|YP_001012502.1|	-	0.3	9.0	4.4	0.35	8.8	3.1	1.1	1	0	0	1	1	1	0	Orbivirus	non-structural	protein	NS1,	or	hydrophobic	tubular	protein
Lectin_N	PF03954.9	gi|124027182|ref|YP_001012502.1|	-	0.32	10.3	1.7	0.36	10.2	0.4	1.7	2	0	0	2	2	2	0	Hepatic	lectin,	N-terminal	domain
YPEB	PF14620.1	gi|124027182|ref|YP_001012502.1|	-	0.35	9.8	5.7	0.38	9.7	3.9	1.0	1	0	0	1	1	1	0	YpeB	sporulation
FH2	PF02181.18	gi|124027182|ref|YP_001012502.1|	-	0.45	9.3	8.1	0.53	9.1	5.6	1.0	1	0	0	1	1	1	0	Formin	Homology	2	Domain
ERM	PF00769.14	gi|124027182|ref|YP_001012502.1|	-	0.56	9.7	27.1	0.65	9.4	18.8	1.0	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Tweety	PF04906.8	gi|124027182|ref|YP_001012502.1|	-	0.6	8.4	3.5	0.63	8.3	0.8	1.8	1	1	1	2	2	2	0	Tweety
ISG65-75	PF11727.3	gi|124027182|ref|YP_001012502.1|	-	0.62	9.0	9.8	0.79	8.7	6.8	1.0	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
FlxA	PF14282.1	gi|124027182|ref|YP_001012502.1|	-	0.64	9.9	8.8	1.2	9.1	6.1	1.5	1	1	0	1	1	1	0	FlxA-like	protein
YkyA	PF10368.4	gi|124027182|ref|YP_001012502.1|	-	0.72	9.1	12.0	0.86	8.8	8.3	1.1	1	0	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
DUF445	PF04286.7	gi|124027182|ref|YP_001012502.1|	-	0.8	9.1	8.1	1	8.8	5.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
Allexi_40kDa	PF05549.6	gi|124027182|ref|YP_001012502.1|	-	0.82	8.9	2.8	0.88	8.8	1.9	1.2	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
Spc7	PF08317.6	gi|124027182|ref|YP_001012502.1|	-	0.85	8.2	12.6	1	7.9	8.7	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
AATF-Che1	PF13339.1	gi|124027182|ref|YP_001012502.1|	-	0.95	9.6	9.0	1.4	9.1	6.2	1.3	1	0	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
ACCA	PF03255.9	gi|124027182|ref|YP_001012502.1|	-	1	8.8	9.6	1.4	8.4	3.0	2.0	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
APH	PF01636.18	gi|124027182|ref|YP_001012502.1|	-	1.1	8.9	9.6	1.3	8.6	6.6	1.1	1	0	0	1	1	1	0	Phosphotransferase	enzyme	family
V_ATPase_I	PF01496.14	gi|124027182|ref|YP_001012502.1|	-	1.2	6.9	10.0	1.2	6.8	6.9	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
AAA_13	PF13166.1	gi|124027182|ref|YP_001012502.1|	-	1.3	7.3	7.6	1.6	7.0	5.3	1.1	1	0	0	1	1	1	0	AAA	domain
Transpep_BrtH	PF14399.1	gi|124027182|ref|YP_001012502.1|	-	1.3	8.2	6.9	1.5	8.0	4.8	1.2	1	0	0	1	1	1	0	NlpC/p60-like	transpeptidase
DUF883	PF05957.8	gi|124027182|ref|YP_001012502.1|	-	1.6	9.1	21.2	0.61	10.5	7.2	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
TetR	PF13972.1	gi|124027182|ref|YP_001012502.1|	-	1.7	8.0	7.6	0.54	9.6	1.6	2.4	1	1	2	3	3	3	0	Bacterial	transcriptional	repressor
DUF885	PF05960.6	gi|124027182|ref|YP_001012502.1|	-	1.8	7.6	10.2	1.8	7.5	7.1	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
DUF1664	PF07889.7	gi|124027182|ref|YP_001012502.1|	-	1.8	8.4	5.3	7.6	6.3	3.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF2317	PF10079.4	gi|124027182|ref|YP_001012502.1|	-	1.8	7.0	12.8	1.9	7.0	8.8	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
Acyl-CoA_dh_C	PF12806.2	gi|124027182|ref|YP_001012502.1|	-	1.9	8.3	12.6	0.35	10.7	4.9	2.0	1	1	1	2	2	2	0	Acetyl-CoA	dehydrogenase	C-terminal	like
HSP70	PF00012.15	gi|124027182|ref|YP_001012502.1|	-	2.2	6.0	10.8	2.5	5.9	7.5	1.0	1	0	0	1	1	1	0	Hsp70	protein
Erythro_esteras	PF05139.9	gi|124027182|ref|YP_001012502.1|	-	2.2	7.3	13.3	2.5	7.2	9.2	1.1	1	0	0	1	1	1	0	Erythromycin	esterase
Asp-B-Hydro_N	PF05279.6	gi|124027182|ref|YP_001012502.1|	-	2.3	7.9	14.1	3.6	7.3	7.4	1.7	1	1	1	2	2	2	0	Aspartyl	beta-hydroxylase	N-terminal	region
DUF342	PF03961.8	gi|124027182|ref|YP_001012502.1|	-	2.4	6.4	9.1	2.7	6.3	6.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
LMBR1	PF04791.11	gi|124027182|ref|YP_001012502.1|	-	2.7	6.4	5.4	3	6.3	3.7	1.0	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
GvpL_GvpF	PF06386.6	gi|124027182|ref|YP_001012502.1|	-	2.8	7.4	18.8	3.3	7.2	13.0	1.1	1	0	0	1	1	1	0	Gas	vesicle	synthesis	protein	GvpL/GvpF
CRISPR_Cse1	PF09481.5	gi|124027182|ref|YP_001012502.1|	-	2.9	6.5	10.5	3.1	6.4	7.3	1.0	1	0	0	1	1	1	0	CRISPR-associated	protein	Cse1	(CRISPR_cse1)
Fzo_mitofusin	PF04799.8	gi|124027182|ref|YP_001012502.1|	-	3.1	7.1	6.4	1.7	7.9	1.0	2.0	1	1	1	2	2	2	0	fzo-like	conserved	region
Spore_III_AF	PF09581.5	gi|124027182|ref|YP_001012502.1|	-	3.7	7.3	8.3	4.8	7.0	5.7	1.3	1	1	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
DUF3708	PF12501.3	gi|124027182|ref|YP_001012502.1|	-	4	7.2	9.1	5.7	6.7	6.1	1.5	1	1	0	1	1	1	0	Phosphate	ATP-binding	cassette	transporter
PDDEXK_1	PF12705.2	gi|124027182|ref|YP_001012502.1|	-	4.3	6.6	7.6	6.1	6.1	5.3	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
TMPIT	PF07851.8	gi|124027182|ref|YP_001012502.1|	-	4.3	6.3	5.9	4.8	6.1	4.1	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
T2SF	PF00482.18	gi|124027182|ref|YP_001012502.1|	-	4.4	7.2	13.5	0.43	10.4	4.9	2.1	1	1	1	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
RapA_C	PF12137.3	gi|124027182|ref|YP_001012502.1|	-	4.6	5.9	13.1	8.9	5.0	9.0	1.6	1	1	0	1	1	1	0	RNA	polymerase	recycling	family	C-terminal
Spore_III_AB	PF09548.5	gi|124027182|ref|YP_001012502.1|	-	5.1	6.8	9.1	6.5	6.4	6.3	1.3	1	1	0	1	1	1	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
YlqD	PF11068.3	gi|124027182|ref|YP_001012502.1|	-	5.5	7.0	15.2	3	7.9	6.3	2.0	1	1	1	2	2	2	0	YlqD	protein
ATP-synt_B	PF00430.13	gi|124027182|ref|YP_001012502.1|	-	6.2	6.6	25.3	20	5.0	17.5	1.8	1	1	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
HSCB_C	PF07743.8	gi|124027182|ref|YP_001012502.1|	-	6.3	7.3	21.2	10	6.6	6.4	2.5	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
HTH_12	PF08461.5	gi|124027182|ref|YP_001012502.1|	-	6.5	6.5	12.6	1.2	8.9	5.2	2.3	1	1	2	3	3	3	0	Ribonuclease	R	winged-helix	domain
CorA	PF01544.13	gi|124027182|ref|YP_001012502.1|	-	6.7	5.6	11.4	8.7	5.2	7.9	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
APG6	PF04111.7	gi|124027182|ref|YP_001012502.1|	-	6.8	5.6	16.7	8.8	5.2	11.6	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
OmpH	PF03938.9	gi|124027182|ref|YP_001012502.1|	-	6.8	6.6	21.0	11	5.8	14.6	1.4	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
MutS_III	PF05192.13	gi|124027182|ref|YP_001012502.1|	-	6.8	6.4	12.5	8.6	6.0	8.7	1.0	1	0	0	1	1	1	0	MutS	domain	III
zf-C4H2	PF10146.4	gi|124027182|ref|YP_001012502.1|	-	6.8	6.6	12.6	23	4.9	5.0	1.9	1	1	1	2	2	2	0	Zinc	finger-containing	protein
Atg14	PF10186.4	gi|124027182|ref|YP_001012502.1|	-	7.8	5.3	16.2	10	4.9	11.3	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Mitofilin	PF09731.4	gi|124027182|ref|YP_001012502.1|	-	7.8	5.0	23.3	10	4.6	16.1	1.2	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
Prefoldin_2	PF01920.15	gi|124027182|ref|YP_001012502.1|	-	9.2	6.0	17.5	2.1	8.1	5.0	2.2	1	1	1	2	2	2	0	Prefoldin	subunit
EamA	PF00892.15	gi|124027183|ref|YP_001012503.1|	-	3.6e-24	85.2	29.5	2.3e-14	53.4	5.5	2.3	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|124027183|ref|YP_001012503.1|	-	6.7e-08	32.7	39.3	0.0016	18.6	7.1	3.9	1	1	3	4	4	4	2	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|124027183|ref|YP_001012503.1|	-	0.38	10.3	6.5	0.49	10.0	0.1	2.4	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
Glyco_trans_1_4	PF13692.1	gi|124027184|ref|YP_001012504.1|	-	0.055	13.6	0.1	0.18	11.9	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	transferases	group	1
DUF95	PF01944.12	gi|124027185|ref|YP_001012505.1|	-	2.8e-28	98.6	9.6	3.6e-28	98.3	6.6	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	DUF95
ThiC	PF01964.13	gi|124027186|ref|YP_001012506.1|	-	9.1e-173	574.6	0.0	1e-172	574.4	0.0	1.0	1	0	0	1	1	1	1	ThiC	family
ComX	PF05952.7	gi|124027187|ref|YP_001012507.1|	-	0.13	11.8	0.0	0.52	9.8	0.0	2.0	2	0	0	2	2	2	0	Bacillus	competence	pheromone	ComX
adh_short	PF00106.20	gi|124027188|ref|YP_001012508.1|	-	2.8e-38	131.4	2.3	3.6e-38	131.1	1.6	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|124027188|ref|YP_001012508.1|	-	1.1e-23	84.2	0.0	1.3e-23	84.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|124027188|ref|YP_001012508.1|	-	5.5e-19	68.5	0.7	7.1e-19	68.1	0.5	1.1	1	0	0	1	1	1	1	KR	domain
DUF2493	PF10686.4	gi|124027188|ref|YP_001012508.1|	-	0.00027	20.4	0.3	0.65	9.5	0.0	3.1	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2493)
Eno-Rase_NADH_b	PF12242.3	gi|124027188|ref|YP_001012508.1|	-	0.00082	19.1	1.0	0.0018	18.0	0.7	1.6	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
PALP	PF00291.20	gi|124027188|ref|YP_001012508.1|	-	0.0015	17.8	2.8	0.006	15.8	1.9	1.9	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Epimerase	PF01370.16	gi|124027188|ref|YP_001012508.1|	-	0.0015	17.9	1.8	0.0076	15.7	1.3	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
PA	PF02225.17	gi|124027188|ref|YP_001012508.1|	-	0.52	10.0	5.7	1.2	8.9	2.3	2.4	2	1	1	3	3	3	0	PA	domain
NAD_binding_10	PF13460.1	gi|124027188|ref|YP_001012508.1|	-	0.53	10.2	6.7	4.7	7.1	4.6	2.5	1	1	0	1	1	1	0	NADH(P)-binding
DUF3185	PF11381.3	gi|124027189|ref|YP_001012509.1|	-	0.018	14.7	0.9	0.13	12.0	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
Trp_oprn_chp	PF09534.5	gi|124027189|ref|YP_001012509.1|	-	0.08	12.5	2.5	0.085	12.4	1.7	1.0	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF308	PF03729.8	gi|124027189|ref|YP_001012509.1|	-	0.1	12.5	4.6	0.34	10.9	0.9	2.1	2	0	0	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
YtpI	PF14007.1	gi|124027189|ref|YP_001012509.1|	-	0.15	12.0	0.4	0.15	12.0	0.3	1.6	2	0	0	2	2	2	0	YtpI-like	protein
DUF2905	PF11146.3	gi|124027189|ref|YP_001012509.1|	-	0.36	10.8	3.3	0.32	10.9	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2905)
TMEM238	PF15125.1	gi|124027189|ref|YP_001012509.1|	-	0.41	10.5	5.4	3.1	7.7	0.4	2.1	2	0	0	2	2	2	0	TMEM238	protein	family
IncA	PF04156.9	gi|124027189|ref|YP_001012509.1|	-	2.1	7.9	6.2	0.69	9.4	1.2	1.9	2	0	0	2	2	2	0	IncA	protein
DUF1469	PF07332.6	gi|124027189|ref|YP_001012509.1|	-	5.4	6.7	11.5	2.8	7.6	3.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1469)
Apq12	PF12716.2	gi|124027189|ref|YP_001012509.1|	-	7.6	6.3	8.4	5.4	6.7	0.5	2.2	2	0	0	2	2	2	0	Nuclear	pore	assembly	and	biogenesis
NfeD	PF01957.13	gi|124027189|ref|YP_001012509.1|	-	7.7	6.6	8.2	5.5	7.1	4.1	1.7	1	1	1	2	2	2	0	NfeD-like	C-terminal,	partner-binding
SecY	PF00344.15	gi|124027190|ref|YP_001012510.1|	-	0.095	11.6	0.2	0.094	11.6	0.1	1.1	1	0	0	1	1	1	0	SecY	translocase
DUF3021	PF11457.3	gi|124027191|ref|YP_001012511.1|	-	0.42	10.5	4.3	0.82	9.5	3.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3021)
DUF2339	PF10101.4	gi|124027192|ref|YP_001012512.1|	-	0.02	13.1	11.6	0.021	13.1	8.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
MS_channel	PF00924.13	gi|124027192|ref|YP_001012512.1|	-	0.12	11.6	2.6	0.16	11.2	1.8	1.3	1	0	0	1	1	1	0	Mechanosensitive	ion	channel
DUF3188	PF11384.3	gi|124027192|ref|YP_001012512.1|	-	0.15	11.6	1.1	0.39	10.3	0.7	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
RseC_MucC	PF04246.7	gi|124027192|ref|YP_001012512.1|	-	0.19	11.3	10.9	0.48	9.9	2.4	2.1	2	0	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
Mito_carr	PF00153.22	gi|124027192|ref|YP_001012512.1|	-	0.28	10.9	0.1	0.28	10.9	0.0	2.4	3	0	0	3	3	3	0	Mitochondrial	carrier	protein
Exosortase_EpsH	PF09721.5	gi|124027192|ref|YP_001012512.1|	-	0.45	9.6	15.0	0.79	8.8	10.4	1.3	1	1	0	1	1	1	0	Transmembrane	exosortase	(Exosortase_EpsH)
TctB	PF07331.6	gi|124027192|ref|YP_001012512.1|	-	7.2	6.2	16.1	15	5.2	11.2	1.4	1	1	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
bPH_5	PF10882.3	gi|124027193|ref|YP_001012513.1|	-	1.7e-21	75.8	0.0	2.3e-21	75.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF1648	PF07853.6	gi|124027193|ref|YP_001012513.1|	-	9.7e-07	28.2	0.2	9.7e-07	28.2	0.1	2.4	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1648)
SDH_sah	PF01972.11	gi|124027194|ref|YP_001012514.1|	-	2.1e-107	358.1	0.5	2.4e-107	357.9	0.3	1.0	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
CLP_protease	PF00574.18	gi|124027194|ref|YP_001012514.1|	-	4.3e-08	33.0	0.0	1.5e-07	31.2	0.0	1.7	2	0	0	2	2	2	1	Clp	protease
Peptidase_S49	PF01343.13	gi|124027194|ref|YP_001012514.1|	-	0.00022	21.0	0.0	0.00044	20.0	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	S49
Dak1_2	PF13684.1	gi|124027194|ref|YP_001012514.1|	-	0.079	11.8	0.5	6.7	5.5	0.0	2.0	2	0	0	2	2	2	0	Dihydroxyacetone	kinase	family
Bmp	PF02608.9	gi|124027195|ref|YP_001012515.1|	-	1.7e-19	69.6	0.0	2.4e-19	69.2	0.0	1.2	1	0	0	1	1	1	1	Basic	membrane	protein
CytB6-F_Fe-S	PF08802.5	gi|124027195|ref|YP_001012515.1|	-	5.9	6.9	6.1	1.7	8.7	0.5	2.5	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
TAT_signal	PF10518.4	gi|124027195|ref|YP_001012515.1|	-	6.1	7.1	11.9	0.12	12.3	3.4	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pribosyltran	PF00156.22	gi|124027196|ref|YP_001012516.1|	-	3e-16	59.2	0.0	7.1e-16	58.0	0.0	1.6	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.17	gi|124027196|ref|YP_001012516.1|	-	6.9e-06	25.8	0.4	2e-05	24.3	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.2	gi|124027196|ref|YP_001012516.1|	-	0.0076	16.2	0.0	0.023	14.7	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|124027196|ref|YP_001012516.1|	-	0.013	15.6	4.0	0.14	12.3	0.2	2.9	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|124027196|ref|YP_001012516.1|	-	0.016	15.3	0.0	0.061	13.5	0.0	1.9	2	0	0	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_23	PF13384.1	gi|124027196|ref|YP_001012516.1|	-	0.027	14.1	0.3	0.2	11.3	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|124027196|ref|YP_001012516.1|	-	0.069	12.5	0.1	0.3	10.5	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Vault	PF01505.13	gi|124027196|ref|YP_001012516.1|	-	0.12	12.3	0.5	0.28	11.2	0.1	1.7	2	0	0	2	2	2	0	Major	Vault	Protein	repeat
CaM-KIIN	PF15170.1	gi|124027196|ref|YP_001012516.1|	-	0.14	12.1	0.0	0.29	11.1	0.0	1.5	1	0	0	1	1	1	0	Calcium/calmodulin-dependent	protein	kinase	II	inhibitor
AAA	PF00004.24	gi|124027197|ref|YP_001012517.1|	-	1.5e-100	332.6	0.0	1.1e-50	171.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|124027197|ref|YP_001012517.1|	-	1.5e-27	95.3	0.5	7.3e-27	93.1	0.6	2.1	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.12	gi|124027197|ref|YP_001012517.1|	-	2.1e-16	59.3	0.1	4.5e-16	58.2	0.1	1.6	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_2	PF07724.9	gi|124027197|ref|YP_001012517.1|	-	1.7e-15	57.3	0.0	2.4e-08	34.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|124027197|ref|YP_001012517.1|	-	2.6e-15	56.1	0.1	1.6e-08	33.8	0.0	2.7	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|124027197|ref|YP_001012517.1|	-	8.7e-15	55.1	0.0	1e-07	32.1	0.0	3.3	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027197|ref|YP_001012517.1|	-	5.5e-13	49.1	0.7	3.9e-05	23.7	0.0	4.3	2	2	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|124027197|ref|YP_001012517.1|	-	5.7e-13	49.7	0.6	1.3e-06	29.2	0.0	3.6	3	2	0	3	3	3	2	AAA	domain
AAA_5	PF07728.9	gi|124027197|ref|YP_001012517.1|	-	1.2e-11	44.4	0.8	0.00023	20.9	0.1	4.0	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|124027197|ref|YP_001012517.1|	-	1.8e-11	44.0	0.0	1.7e-06	27.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|124027197|ref|YP_001012517.1|	-	6.8e-11	41.5	0.0	0.00019	20.2	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|124027197|ref|YP_001012517.1|	-	7.3e-11	42.1	0.0	0.00017	21.5	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.1	gi|124027197|ref|YP_001012517.1|	-	2.7e-09	37.4	0.1	0.00035	20.8	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|124027197|ref|YP_001012517.1|	-	4.3e-09	36.0	0.1	0.0021	17.5	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.7	gi|124027197|ref|YP_001012517.1|	-	5.8e-09	35.3	0.0	0.00055	19.0	0.0	2.4	2	0	0	2	2	2	2	Zeta	toxin
AAA_28	PF13521.1	gi|124027197|ref|YP_001012517.1|	-	6e-08	32.8	0.0	0.0054	16.7	0.0	3.4	3	0	0	3	3	3	2	AAA	domain
AAA_25	PF13481.1	gi|124027197|ref|YP_001012517.1|	-	1.1e-07	31.4	7.9	0.0068	15.8	0.2	4.4	2	2	2	4	4	4	2	AAA	domain
Arch_ATPase	PF01637.13	gi|124027197|ref|YP_001012517.1|	-	4.8e-07	29.7	0.2	0.001	18.8	0.0	3.6	2	2	2	4	4	4	1	Archaeal	ATPase
RNA_helicase	PF00910.17	gi|124027197|ref|YP_001012517.1|	-	5.1e-07	29.8	0.0	0.0036	17.4	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
AAA_19	PF13245.1	gi|124027197|ref|YP_001012517.1|	-	7.8e-07	28.7	0.2	0.023	14.4	0.1	3.0	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_24	PF13479.1	gi|124027197|ref|YP_001012517.1|	-	1.5e-06	27.9	0.1	0.018	14.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|124027197|ref|YP_001012517.1|	-	2e-06	27.1	2.0	0.035	13.2	0.1	2.7	3	0	0	3	3	2	2	Magnesium	chelatase,	subunit	ChlI
Vps4_C	PF09336.5	gi|124027197|ref|YP_001012517.1|	-	7.5e-06	25.7	0.1	0.015	15.1	0.0	2.9	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_3	PF07726.6	gi|124027197|ref|YP_001012517.1|	-	2.7e-05	23.7	0.0	0.083	12.4	0.0	3.1	4	0	0	4	4	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|124027197|ref|YP_001012517.1|	-	6.5e-05	22.4	0.1	0.78	9.1	0.0	3.8	3	1	0	3	3	3	2	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|124027197|ref|YP_001012517.1|	-	8.3e-05	22.3	1.8	0.17	11.4	0.0	4.0	4	0	0	4	4	4	1	NACHT	domain
Bac_DnaA	PF00308.13	gi|124027197|ref|YP_001012517.1|	-	9.6e-05	22.1	0.0	0.0086	15.7	0.0	3.1	3	1	0	3	3	3	1	Bacterial	dnaA	protein
DUF815	PF05673.8	gi|124027197|ref|YP_001012517.1|	-	0.00012	21.1	0.0	0.32	9.8	0.0	2.6	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
KaiC	PF06745.8	gi|124027197|ref|YP_001012517.1|	-	0.00016	20.8	0.9	0.47	9.5	0.0	3.6	3	1	1	4	4	3	2	KaiC
Sigma54_activ_2	PF14532.1	gi|124027197|ref|YP_001012517.1|	-	0.0002	21.4	0.0	0.89	9.6	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|124027197|ref|YP_001012517.1|	-	0.00025	21.3	0.0	0.68	10.2	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
SKI	PF01202.17	gi|124027197|ref|YP_001012517.1|	-	0.00047	20.0	0.0	0.33	10.8	0.0	2.8	2	0	0	2	2	2	1	Shikimate	kinase
PhoH	PF02562.11	gi|124027197|ref|YP_001012517.1|	-	0.00054	19.2	1.1	0.13	11.4	0.1	2.7	2	0	0	2	2	2	1	PhoH-like	protein
Parvo_NS1	PF01057.12	gi|124027197|ref|YP_001012517.1|	-	0.0013	17.7	0.1	0.39	9.5	0.0	2.2	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
UPF0079	PF02367.12	gi|124027197|ref|YP_001012517.1|	-	0.0019	17.8	1.0	0.5	10.0	0.0	2.7	3	0	0	3	3	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
NTPase_1	PF03266.10	gi|124027197|ref|YP_001012517.1|	-	0.004	16.8	2.0	3.7	7.2	0.0	3.9	2	2	1	3	3	3	0	NTPase
NB-ARC	PF00931.17	gi|124027197|ref|YP_001012517.1|	-	0.004	16.0	0.0	0.58	8.9	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
DUF2075	PF09848.4	gi|124027197|ref|YP_001012517.1|	-	0.0051	15.8	0.0	1.2	7.9	0.0	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
ATP-synt_ab	PF00006.20	gi|124027197|ref|YP_001012517.1|	-	0.0097	15.4	0.0	4.5	6.7	0.0	2.5	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
UFD1	PF03152.9	gi|124027197|ref|YP_001012517.1|	-	0.01	14.9	0.0	0.025	13.7	0.0	1.5	1	1	0	1	1	1	0	Ubiquitin	fusion	degradation	protein	UFD1
T2SE	PF00437.15	gi|124027197|ref|YP_001012517.1|	-	0.01	14.7	0.0	4.1	6.2	0.0	2.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_10	PF12846.2	gi|124027197|ref|YP_001012517.1|	-	0.012	15.1	2.4	1.1	8.6	0.1	3.5	3	1	0	3	3	3	0	AAA-like	domain
ResIII	PF04851.10	gi|124027197|ref|YP_001012517.1|	-	0.014	15.2	0.0	3.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Molydop_binding	PF01568.16	gi|124027197|ref|YP_001012517.1|	-	0.018	14.8	0.1	0.064	13.0	0.1	1.9	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
AFG1_ATPase	PF03969.11	gi|124027197|ref|YP_001012517.1|	-	0.025	13.4	0.0	4.9	5.8	0.0	2.6	2	0	0	2	2	2	0	AFG1-like	ATPase
DUF1905	PF08922.6	gi|124027197|ref|YP_001012517.1|	-	0.039	13.5	0.1	2.7	7.6	0.0	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1905)
AAA_11	PF13086.1	gi|124027197|ref|YP_001012517.1|	-	0.042	13.4	0.0	5.4	6.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
IPT	PF01745.11	gi|124027197|ref|YP_001012517.1|	-	0.062	12.4	0.3	11	5.0	0.0	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
KTI12	PF08433.5	gi|124027197|ref|YP_001012517.1|	-	0.067	12.3	0.0	4	6.5	0.0	2.5	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
Guanylate_kin	PF00625.16	gi|124027197|ref|YP_001012517.1|	-	0.079	12.3	0.4	19	4.6	0.0	3.8	3	1	1	4	4	4	0	Guanylate	kinase
MMR_HSR1	PF01926.18	gi|124027197|ref|YP_001012517.1|	-	0.093	12.6	0.0	2.1	8.3	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Viral_helicase1	PF01443.13	gi|124027197|ref|YP_001012517.1|	-	0.11	12.0	0.0	7.2	6.0	0.0	2.5	3	0	0	3	3	2	0	Viral	(Superfamily	1)	RNA	helicase
Rad17	PF03215.10	gi|124027197|ref|YP_001012517.1|	-	0.18	10.4	0.0	2.9	6.4	0.0	2.1	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
AAA_21	PF13304.1	gi|124027197|ref|YP_001012517.1|	-	7.2	6.4	5.0	39	4.0	1.1	3.1	2	2	0	2	2	2	0	AAA	domain
CPSase_L_D2	PF02786.12	gi|124027199|ref|YP_001012519.1|	-	2e-102	340.9	0.0	9.9e-70	234.0	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|124027199|ref|YP_001012519.1|	-	4.6e-37	126.4	0.0	4.2e-17	62.2	0.0	3.0	3	0	0	3	3	3	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
CPSase_L_D3	PF02787.14	gi|124027199|ref|YP_001012519.1|	-	6.2e-34	116.4	0.0	1.6e-33	115.0	0.0	1.7	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp_4	PF13535.1	gi|124027199|ref|YP_001012519.1|	-	1e-33	116.6	0.1	3.8e-16	59.3	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|124027199|ref|YP_001012519.1|	-	3.3e-21	75.3	0.0	4.4e-09	35.5	0.0	4.1	3	1	0	3	3	3	3	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|124027199|ref|YP_001012519.1|	-	6.3e-19	67.9	0.0	1.6e-10	40.6	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|124027199|ref|YP_001012519.1|	-	4.9e-15	55.4	0.0	4.3e-09	36.0	0.0	2.6	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.1	gi|124027199|ref|YP_001012519.1|	-	1.6e-07	30.8	0.0	0.0015	17.8	0.0	2.7	2	0	0	2	2	2	2	ATP-grasp	domain
RimK	PF08443.6	gi|124027199|ref|YP_001012519.1|	-	4.7e-07	29.4	0.0	0.0011	18.5	0.0	3.0	3	0	0	3	3	3	2	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|124027199|ref|YP_001012519.1|	-	6.1e-06	26.1	0.2	0.0096	15.8	0.1	3.1	2	2	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.14	gi|124027199|ref|YP_001012519.1|	-	0.00091	18.8	0.0	0.18	11.3	0.0	2.6	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_2	PF08442.5	gi|124027199|ref|YP_001012519.1|	-	0.016	14.5	0.0	1.6	8.0	0.0	2.4	2	0	0	2	2	2	0	ATP-grasp	domain
DUF348	PF03990.9	gi|124027199|ref|YP_001012519.1|	-	0.036	13.6	0.0	12	5.6	0.0	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF348)
CPSase_sm_chain	PF00988.17	gi|124027200|ref|YP_001012520.1|	-	2.5e-47	159.6	0.0	3.6e-47	159.1	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|124027200|ref|YP_001012520.1|	-	1.9e-36	125.3	0.0	3.1e-36	124.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|124027200|ref|YP_001012520.1|	-	2.5e-08	33.6	0.0	5.1e-05	22.8	0.0	3.0	2	1	0	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|124027200|ref|YP_001012520.1|	-	0.00017	21.0	0.1	0.00029	20.3	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.9	gi|124027200|ref|YP_001012520.1|	-	0.033	13.7	0.0	0.13	11.8	0.0	1.8	2	0	0	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Lyase_1	PF00206.15	gi|124027201|ref|YP_001012521.1|	-	1e-24	87.3	0.0	1.4e-24	86.8	0.0	1.2	1	0	0	1	1	1	1	Lyase
Arginosuc_synth	PF00764.14	gi|124027202|ref|YP_001012522.1|	-	4.2e-148	493.5	0.0	5e-148	493.2	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
Asn_synthase	PF00733.16	gi|124027202|ref|YP_001012522.1|	-	1.8e-06	27.6	0.1	2.7e-06	27.0	0.1	1.3	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|124027202|ref|YP_001012522.1|	-	1.5e-05	23.7	0.2	2.7e-05	22.8	0.1	1.4	1	0	0	1	1	1	1	tRNA	methyl	transferase
QueC	PF06508.8	gi|124027202|ref|YP_001012522.1|	-	3e-05	23.3	0.1	5.3e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
PAPS_reduct	PF01507.14	gi|124027202|ref|YP_001012522.1|	-	0.0089	15.8	0.1	0.019	14.7	0.0	1.6	2	0	0	2	2	2	1	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_3	PF01171.15	gi|124027202|ref|YP_001012522.1|	-	0.085	12.3	0.0	0.3	10.5	0.0	1.8	2	1	0	2	2	2	0	PP-loop	family
ThiI	PF02568.9	gi|124027202|ref|YP_001012522.1|	-	0.1	12.0	0.1	0.15	11.4	0.1	1.2	1	0	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
ACT_7	PF13840.1	gi|124027203|ref|YP_001012523.1|	-	3.4e-11	42.4	0.1	8e-11	41.3	0.0	1.7	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|124027203|ref|YP_001012523.1|	-	0.0038	16.6	0.1	0.012	15.0	0.0	2.0	1	0	0	1	1	1	1	ACT	domain
ACT_6	PF13740.1	gi|124027203|ref|YP_001012523.1|	-	0.072	12.8	0.0	0.19	11.4	0.0	1.7	1	0	0	1	1	1	0	ACT	domain
DUF3248	PF11609.3	gi|124027203|ref|YP_001012523.1|	-	0.12	12.0	0.4	0.31	10.7	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3248)
GHL6	PF14871.1	gi|124027204|ref|YP_001012524.1|	-	3.8e-36	124.0	0.0	2.3e-34	118.2	0.0	2.6	2	1	0	2	2	2	1	Hypothetical	glycosyl	hydrolase	6
Glyco_hydro_42M	PF08532.5	gi|124027204|ref|YP_001012524.1|	-	1.7e-08	33.8	0.0	3.6e-08	32.8	0.0	1.5	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
ThuA	PF06283.6	gi|124027204|ref|YP_001012524.1|	-	0.00014	21.6	0.0	0.00047	19.9	0.0	1.8	1	1	0	1	1	1	1	Trehalose	utilisation
DUF187	PF02638.10	gi|124027204|ref|YP_001012524.1|	-	0.0088	14.9	0.0	0.015	14.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	like	GH101
ABC_tran	PF00005.22	gi|124027205|ref|YP_001012525.1|	-	4.6e-33	114.4	0.0	7.1e-33	113.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|124027205|ref|YP_001012525.1|	-	2.8e-11	43.2	2.2	3.6e-11	42.8	0.3	2.2	3	0	0	3	3	1	1	TOBE	domain
TOBE	PF03459.12	gi|124027205|ref|YP_001012525.1|	-	9e-09	35.3	2.2	2.4e-05	24.3	0.0	3.3	3	1	0	3	3	2	2	TOBE	domain
AAA_21	PF13304.1	gi|124027205|ref|YP_001012525.1|	-	1.6e-07	31.5	0.0	0.0085	16.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|124027205|ref|YP_001012525.1|	-	0.0006	19.8	0.0	0.0013	18.7	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|124027205|ref|YP_001012525.1|	-	0.00065	19.8	0.0	0.016	15.3	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.1	gi|124027205|ref|YP_001012525.1|	-	0.0022	17.1	0.0	0.02	13.9	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027205|ref|YP_001012525.1|	-	0.0028	17.8	0.3	0.01	15.9	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027205|ref|YP_001012525.1|	-	0.0092	15.7	0.0	0.028	14.1	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
SMC_N	PF02463.14	gi|124027205|ref|YP_001012525.1|	-	0.015	14.5	0.0	1.2	8.3	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Rad17	PF03215.10	gi|124027205|ref|YP_001012525.1|	-	0.026	13.2	0.0	0.032	12.9	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_25	PF13481.1	gi|124027205|ref|YP_001012525.1|	-	0.037	13.4	0.0	0.25	10.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|124027205|ref|YP_001012525.1|	-	0.044	12.9	0.0	0.078	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|124027205|ref|YP_001012525.1|	-	0.049	13.1	0.0	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|124027205|ref|YP_001012525.1|	-	0.055	13.1	0.1	0.16	11.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|124027205|ref|YP_001012525.1|	-	0.06	13.2	0.0	0.11	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124027205|ref|YP_001012525.1|	-	0.065	12.7	0.0	0.15	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|124027205|ref|YP_001012525.1|	-	0.071	12.7	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
Ribosomal_S17	PF00366.15	gi|124027205|ref|YP_001012525.1|	-	0.084	12.9	0.1	0.27	11.2	0.0	1.9	2	0	0	2	2	1	0	Ribosomal	protein	S17
AAA_28	PF13521.1	gi|124027205|ref|YP_001012525.1|	-	0.089	12.7	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|124027205|ref|YP_001012525.1|	-	0.12	13.1	0.5	0.45	11.3	0.3	2.1	2	1	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|124027205|ref|YP_001012525.1|	-	0.13	11.6	0.0	0.3	10.5	0.0	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
BPD_transp_1	PF00528.17	gi|124027206|ref|YP_001012526.1|	-	2.8e-18	66.0	24.8	2.8e-18	66.0	17.2	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|124027207|ref|YP_001012527.1|	-	1.3e-08	34.6	26.2	1.3e-08	34.6	18.2	2.4	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SKG6	PF08693.5	gi|124027207|ref|YP_001012527.1|	-	0.017	14.4	0.1	0.081	12.2	0.0	2.2	1	0	0	1	1	1	0	Transmembrane	alpha-helix	domain
DUF1761	PF08570.5	gi|124027207|ref|YP_001012527.1|	-	0.16	11.9	12.3	0.14	12.1	5.1	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1761)
SBP_bac_1	PF01547.20	gi|124027208|ref|YP_001012528.1|	-	1.7e-37	129.8	8.1	2.3e-37	129.3	5.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|124027208|ref|YP_001012528.1|	-	8e-36	124.2	0.3	1e-35	123.8	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|124027208|ref|YP_001012528.1|	-	2.2e-06	27.5	0.0	1.1e-05	25.2	0.0	2.0	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|124027208|ref|YP_001012528.1|	-	0.00011	21.6	0.1	0.00076	18.8	0.0	2.1	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Ldh_2	PF02615.9	gi|124027209|ref|YP_001012529.1|	-	1.9e-107	358.8	0.0	2.2e-107	358.6	0.0	1.0	1	0	0	1	1	1	1	Malate/L-lactate	dehydrogenase
F-box-like	PF12937.2	gi|124027210|ref|YP_001012530.1|	-	0.081	12.6	0.1	0.16	11.7	0.1	1.5	1	0	0	1	1	1	0	F-box-like
cobW	PF02492.14	gi|124027211|ref|YP_001012531.1|	-	6.1e-32	110.4	0.0	7.6e-32	110.1	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|124027211|ref|YP_001012531.1|	-	1.5e-07	30.5	0.0	0.0011	17.8	0.0	2.2	2	0	0	2	2	2	2	ArgK	protein
GTP_EFTU	PF00009.22	gi|124027211|ref|YP_001012531.1|	-	5.5e-05	22.6	0.1	0.0027	17.1	0.1	2.1	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
AAA_19	PF13245.1	gi|124027211|ref|YP_001012531.1|	-	0.0048	16.6	0.0	0.014	15.1	0.0	1.8	1	1	0	1	1	1	1	Part	of	AAA	domain
AAA_28	PF13521.1	gi|124027211|ref|YP_001012531.1|	-	0.011	15.6	0.2	0.096	12.6	0.0	2.1	1	1	1	2	2	2	0	AAA	domain
Ras	PF00071.17	gi|124027211|ref|YP_001012531.1|	-	0.015	14.6	0.0	0.21	10.9	0.0	2.2	1	1	0	1	1	1	0	Ras	family
AAA_18	PF13238.1	gi|124027211|ref|YP_001012531.1|	-	0.017	15.3	0.0	0.033	14.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|124027211|ref|YP_001012531.1|	-	0.022	14.8	0.1	0.1	12.7	0.0	2.0	1	1	1	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|124027211|ref|YP_001012531.1|	-	0.039	13.0	0.0	0.084	11.9	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
MobB	PF03205.9	gi|124027211|ref|YP_001012531.1|	-	0.04	13.6	0.0	0.097	12.3	0.0	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
FtsK_SpoIIIE	PF01580.13	gi|124027211|ref|YP_001012531.1|	-	0.046	13.1	0.0	0.078	12.4	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_33	PF13671.1	gi|124027211|ref|YP_001012531.1|	-	0.049	13.5	0.0	0.076	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
UvrD-helicase	PF00580.16	gi|124027211|ref|YP_001012531.1|	-	0.055	12.7	0.0	0.094	12.0	0.0	1.3	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
AAA_16	PF13191.1	gi|124027211|ref|YP_001012531.1|	-	0.058	13.3	0.0	0.074	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
Miro	PF08477.8	gi|124027211|ref|YP_001012531.1|	-	0.075	13.5	0.1	0.25	11.8	0.0	2.0	2	2	0	2	2	2	0	Miro-like	protein
ATP_bind_1	PF03029.12	gi|124027211|ref|YP_001012531.1|	-	0.077	12.5	0.0	0.78	9.2	0.0	2.4	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Viral_helicase1	PF01443.13	gi|124027211|ref|YP_001012531.1|	-	0.078	12.4	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
Arf	PF00025.16	gi|124027211|ref|YP_001012531.1|	-	0.11	11.7	0.0	4.4	6.4	0.0	2.2	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
DUF258	PF03193.11	gi|124027211|ref|YP_001012531.1|	-	0.11	11.6	0.0	0.85	8.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
HypA	PF01155.14	gi|124027212|ref|YP_001012532.1|	-	2.8e-32	110.7	0.0	3.3e-32	110.5	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zf-ISL3	PF14690.1	gi|124027212|ref|YP_001012532.1|	-	2.3e-05	24.3	0.6	0.049	13.6	0.0	2.3	2	0	0	2	2	2	2	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
UPF0547	PF10571.4	gi|124027212|ref|YP_001012532.1|	-	0.00011	21.8	4.9	0.0038	16.8	1.1	2.3	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS1595	PF12760.2	gi|124027212|ref|YP_001012532.1|	-	0.00065	19.4	1.4	0.31	10.8	0.2	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|124027212|ref|YP_001012532.1|	-	0.00092	19.1	2.2	0.05	13.5	0.4	2.8	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_2	PF13240.1	gi|124027212|ref|YP_001012532.1|	-	0.0012	18.2	1.1	0.32	10.5	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|124027212|ref|YP_001012532.1|	-	0.0014	17.7	1.0	1.1	8.5	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124027212|ref|YP_001012532.1|	-	0.0015	18.1	1.0	0.22	11.1	0.0	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|124027212|ref|YP_001012532.1|	-	0.0018	18.2	0.4	1.7	8.6	0.0	2.4	2	0	0	2	2	2	2	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124027212|ref|YP_001012532.1|	-	0.002	17.7	0.9	0.32	10.7	0.0	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124027212|ref|YP_001012532.1|	-	0.0032	16.7	2.3	0.87	8.9	0.4	2.7	2	1	0	2	2	2	2	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.7	gi|124027212|ref|YP_001012532.1|	-	0.009	15.7	3.1	0.066	13.0	0.3	2.2	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
Nudix_N_2	PF14803.1	gi|124027212|ref|YP_001012532.1|	-	0.012	15.3	2.3	0.27	10.9	0.2	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
Zn_Tnp_IS1	PF03811.8	gi|124027212|ref|YP_001012532.1|	-	0.012	15.1	3.5	0.31	10.5	0.1	2.4	2	0	0	2	2	2	0	InsA	N-terminal	domain
OrfB_Zn_ribbon	PF07282.6	gi|124027212|ref|YP_001012532.1|	-	0.012	15.2	0.1	1.1	8.9	0.0	2.2	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Elf1	PF05129.8	gi|124027212|ref|YP_001012532.1|	-	0.013	15.1	0.0	1	9.1	0.0	2.2	2	0	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
DUF3797	PF12677.2	gi|124027212|ref|YP_001012532.1|	-	0.02	14.5	1.0	0.65	9.6	0.1	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-RING_3	PF14369.1	gi|124027212|ref|YP_001012532.1|	-	0.023	14.7	1.1	6.5	6.8	0.0	2.4	2	0	0	2	2	2	0	zinc-finger
Rubredoxin	PF00301.15	gi|124027212|ref|YP_001012532.1|	-	0.031	14.1	0.7	2.4	8.1	0.0	2.3	2	0	0	2	2	2	0	Rubredoxin
Lar_restr_allev	PF14354.1	gi|124027212|ref|YP_001012532.1|	-	0.037	14.3	2.0	0.11	12.8	1.4	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-FPG_IleRS	PF06827.9	gi|124027212|ref|YP_001012532.1|	-	0.04	13.5	4.2	0.07	12.7	0.1	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
DUF35_N	PF12172.3	gi|124027212|ref|YP_001012532.1|	-	0.061	13.2	3.7	1.1	9.2	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TFIIS_C	PF01096.13	gi|124027212|ref|YP_001012532.1|	-	0.075	12.6	2.9	7.8	6.2	0.2	2.7	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
zf-Mss51	PF13824.1	gi|124027212|ref|YP_001012532.1|	-	0.094	12.5	0.2	2.5	8.0	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ZPR1	PF03367.8	gi|124027212|ref|YP_001012532.1|	-	0.13	11.4	1.1	4.5	6.3	0.0	2.4	1	1	0	2	2	2	0	ZPR1	zinc-finger	domain
DUF2296	PF10058.4	gi|124027212|ref|YP_001012532.1|	-	0.15	11.7	0.6	2.1	8.1	0.1	2.3	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-NADH-PPase	PF09297.6	gi|124027212|ref|YP_001012532.1|	-	0.21	11.1	2.9	10	5.7	0.3	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|124027212|ref|YP_001012532.1|	-	0.22	10.9	1.3	8.8	5.9	0.1	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
DZR	PF12773.2	gi|124027212|ref|YP_001012532.1|	-	0.24	11.2	1.3	4.6	7.1	1.2	2.0	1	1	1	2	2	2	0	Double	zinc	ribbon
Ogr_Delta	PF04606.7	gi|124027212|ref|YP_001012532.1|	-	0.57	9.8	2.2	24	4.6	0.3	2.3	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-H2C2_2	PF13465.1	gi|124027212|ref|YP_001012532.1|	-	0.6	10.5	3.1	2.1	8.8	0.3	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-TFIIB	PF13453.1	gi|124027212|ref|YP_001012532.1|	-	1	8.5	4.1	2.7	7.2	0.0	2.5	2	1	1	3	3	3	0	Transcription	factor	zinc-finger
Mu-like_Com	PF10122.4	gi|124027212|ref|YP_001012532.1|	-	1.9	7.6	4.0	4.3	6.4	0.1	2.3	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
RHH_1	PF01402.16	gi|124027213|ref|YP_001012533.1|	-	4.1e-07	29.6	0.0	1.4e-06	27.9	0.0	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|124027213|ref|YP_001012533.1|	-	0.00065	19.3	0.2	0.0047	16.6	0.0	2.2	2	0	0	2	2	2	1	Ribbon-helix-helix	domain
NikR_C	PF08753.6	gi|124027213|ref|YP_001012533.1|	-	0.011	15.6	0.0	0.017	15.0	0.0	1.5	1	1	0	1	1	1	0	NikR	C	terminal	nickel	binding	domain
PadR	PF03551.9	gi|124027213|ref|YP_001012533.1|	-	0.043	13.5	0.1	0.15	11.8	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
Pyr_redox_2	PF07992.9	gi|124027214|ref|YP_001012534.1|	-	4.1e-17	62.7	0.0	7.9e-17	61.7	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|124027214|ref|YP_001012534.1|	-	7.3e-14	51.9	0.7	3.8e-09	36.8	0.1	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027214|ref|YP_001012534.1|	-	0.00033	20.7	0.9	0.29	11.1	0.1	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Peptidase_C26	PF07722.8	gi|124027214|ref|YP_001012534.1|	-	0.0047	16.3	0.0	0.13	11.6	0.0	2.1	2	0	0	2	2	2	1	Peptidase	C26
K_oxygenase	PF13434.1	gi|124027214|ref|YP_001012534.1|	-	0.1	11.4	0.1	0.27	10.1	0.0	1.6	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_9	PF13454.1	gi|124027214|ref|YP_001012534.1|	-	0.14	11.8	0.1	2.6	7.8	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|124027214|ref|YP_001012534.1|	-	0.33	9.8	4.0	1.1	8.1	0.2	2.7	2	1	1	3	3	3	0	Lycopene	cyclase	protein
HTH_IclR	PF09339.5	gi|124027215|ref|YP_001012535.1|	-	4.3e-06	26.2	0.3	1.2e-05	24.7	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|124027215|ref|YP_001012535.1|	-	1e-05	25.1	0.2	2.9e-05	23.6	0.1	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|124027215|ref|YP_001012535.1|	-	0.00013	21.5	0.4	0.00032	20.3	0.3	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|124027215|ref|YP_001012535.1|	-	0.0004	20.0	0.2	0.0011	18.6	0.1	1.8	2	0	0	2	2	2	1	MarR	family
HTH_45	PF14947.1	gi|124027215|ref|YP_001012535.1|	-	0.0023	17.7	0.0	0.0047	16.7	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|124027215|ref|YP_001012535.1|	-	0.0036	17.0	0.1	0.02	14.7	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027215|ref|YP_001012535.1|	-	0.0086	15.4	0.2	0.042	13.2	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|124027215|ref|YP_001012535.1|	-	0.017	15.4	0.2	0.045	14.0	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
FeoC	PF09012.5	gi|124027215|ref|YP_001012535.1|	-	0.021	14.5	0.1	0.049	13.3	0.1	1.6	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_AsnC-type	PF13404.1	gi|124027215|ref|YP_001012535.1|	-	0.044	13.3	0.2	1.5	8.4	0.0	3.0	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
MarR	PF01047.17	gi|124027215|ref|YP_001012535.1|	-	0.068	12.8	0.5	0.27	10.9	0.0	2.2	3	0	0	3	3	3	0	MarR	family
DUF4423	PF14394.1	gi|124027215|ref|YP_001012535.1|	-	0.13	11.7	0.1	0.58	9.6	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
EMG1	PF03587.9	gi|124027216|ref|YP_001012536.1|	-	3.7e-48	163.5	0.0	4.2e-48	163.3	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
Lactamase_B	PF00753.22	gi|124027217|ref|YP_001012537.1|	-	1.1e-17	64.3	7.0	1.4e-17	63.9	4.8	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|124027217|ref|YP_001012537.1|	-	6.5e-05	22.5	0.1	8.5e-05	22.1	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Hydrolase_4	PF12146.3	gi|124027217|ref|YP_001012537.1|	-	0.04	13.7	0.1	0.17	11.7	0.1	2.0	2	0	0	2	2	2	0	Putative	lysophospholipase
GDPD	PF03009.12	gi|124027219|ref|YP_001012539.1|	-	2.6e-06	27.1	0.0	6.2e-06	25.9	0.0	1.6	2	0	0	2	2	2	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.1	gi|124027219|ref|YP_001012539.1|	-	0.13	12.4	0.6	0.79	9.9	0.1	2.3	2	0	0	2	2	2	0	Glycerophosphoryl	diester	phosphodiesterase	family
OrfB_Zn_ribbon	PF07282.6	gi|124027220|ref|YP_001012540.1|	-	0.012	15.2	0.1	0.034	13.8	0.0	1.7	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
PIN	PF01850.16	gi|124027221|ref|YP_001012541.1|	-	1.4e-15	57.6	2.3	1.7e-15	57.4	1.6	1.1	1	0	0	1	1	1	1	PIN	domain
BPD_transp_1	PF00528.17	gi|124027222|ref|YP_001012542.1|	-	0.00037	20.0	12.5	0.00037	20.0	8.7	4.0	3	1	0	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.1	gi|124027223|ref|YP_001012543.1|	-	1.5e-14	54.4	0.0	2.1e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|124027223|ref|YP_001012543.1|	-	1.2e-12	48.0	0.0	2.1e-12	47.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|124027223|ref|YP_001012543.1|	-	6.1e-12	45.8	0.0	9.1e-12	45.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|124027223|ref|YP_001012543.1|	-	9.9e-10	38.1	0.0	7.9e-09	35.1	0.0	2.2	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Radical_SAM	PF04055.16	gi|124027224|ref|YP_001012544.1|	-	5.2e-15	56.0	0.0	1.8e-14	54.2	0.0	1.8	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124027224|ref|YP_001012544.1|	-	7.4e-08	32.6	0.0	1.3e-07	31.8	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|124027224|ref|YP_001012544.1|	-	0.00015	21.7	0.0	0.00028	20.8	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
P5CR_dimer	PF14748.1	gi|124027225|ref|YP_001012545.1|	-	2.6e-30	104.5	0.1	4e-30	103.9	0.0	1.3	1	0	0	1	1	1	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.12	gi|124027225|ref|YP_001012545.1|	-	2e-09	37.7	0.0	4.6e-09	36.5	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
DUF2267	PF10025.4	gi|124027225|ref|YP_001012545.1|	-	0.02	14.9	0.3	0.03	14.3	0.2	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2267)
NAD_Gly3P_dh_N	PF01210.18	gi|124027225|ref|YP_001012545.1|	-	0.12	12.1	0.1	0.33	10.6	0.0	1.7	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF1628	PF07790.6	gi|124027226|ref|YP_001012546.1|	-	0.00023	21.8	1.8	0.00023	21.8	1.3	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
UPF0020	PF01170.13	gi|124027227|ref|YP_001012547.1|	-	3.3e-32	111.5	0.0	4.4e-32	111.0	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|124027227|ref|YP_001012547.1|	-	2.7e-17	62.8	0.0	6.8e-17	61.5	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124027227|ref|YP_001012547.1|	-	0.00029	21.2	0.0	0.001	19.5	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|124027227|ref|YP_001012547.1|	-	0.00095	18.6	0.0	0.0015	17.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_31	PF13847.1	gi|124027227|ref|YP_001012547.1|	-	0.019	14.5	0.0	0.036	13.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
N6_N4_Mtase	PF01555.13	gi|124027227|ref|YP_001012547.1|	-	0.064	12.7	0.0	5	6.5	0.0	2.2	2	0	0	2	2	2	0	DNA	methylase
PIN	PF01850.16	gi|124027228|ref|YP_001012548.1|	-	7.1e-21	74.7	0.8	8.5e-21	74.5	0.5	1.0	1	0	0	1	1	1	1	PIN	domain
RNase_Zc3h12a	PF11977.3	gi|124027228|ref|YP_001012548.1|	-	0.018	14.8	0.0	0.023	14.5	0.0	1.2	1	0	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
PIN_3	PF13470.1	gi|124027228|ref|YP_001012548.1|	-	0.026	15.1	0.4	0.037	14.6	0.3	1.3	1	0	0	1	1	1	0	PIN	domain
Antitoxin-MazE	PF04014.13	gi|124027229|ref|YP_001012549.1|	-	7.6e-13	47.8	0.6	1.2e-12	47.2	0.4	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
2CSK_N	PF08521.5	gi|124027229|ref|YP_001012549.1|	-	0.00029	20.3	0.0	0.00032	20.2	0.0	1.0	1	0	0	1	1	1	1	Two-component	sensor	kinase	N-terminal
HJURP_C	PF12347.3	gi|124027229|ref|YP_001012549.1|	-	0.06	12.9	0.1	0.085	12.4	0.1	1.2	1	0	0	1	1	1	0	Holliday	junction	regulator	protein	family	C-terminal	repeat
AAA_31	PF13614.1	gi|124027229|ref|YP_001012549.1|	-	0.14	12.0	0.0	0.16	11.9	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|124027230|ref|YP_001012550.1|	-	1.4e-27	96.6	0.0	1.9e-27	96.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027230|ref|YP_001012550.1|	-	3.3e-12	46.9	0.0	4.2e-05	23.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027230|ref|YP_001012550.1|	-	3.4e-07	29.7	0.0	0.0015	17.8	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|124027230|ref|YP_001012550.1|	-	6.4e-07	28.7	0.0	0.00013	21.1	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124027230|ref|YP_001012550.1|	-	4.5e-05	22.8	0.1	0.00011	21.6	0.0	1.7	1	1	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SbcCD_C	PF13558.1	gi|124027230|ref|YP_001012550.1|	-	6.4e-05	22.7	0.0	0.001	18.9	0.0	2.5	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.1	gi|124027230|ref|YP_001012550.1|	-	0.00047	20.1	2.0	0.0011	18.9	1.4	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.17	gi|124027230|ref|YP_001012550.1|	-	0.00092	18.6	0.0	0.0047	16.3	0.0	2.0	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.1	gi|124027230|ref|YP_001012550.1|	-	0.0014	18.7	0.0	0.0041	17.2	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|124027230|ref|YP_001012550.1|	-	0.0014	18.0	0.4	0.0019	17.6	0.3	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|124027230|ref|YP_001012550.1|	-	0.0019	18.5	0.0	0.0028	18.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027230|ref|YP_001012550.1|	-	0.0037	18.0	0.8	0.0079	17.0	0.4	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027230|ref|YP_001012550.1|	-	0.0063	16.2	0.4	0.0063	16.2	0.3	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
MobB	PF03205.9	gi|124027230|ref|YP_001012550.1|	-	0.0087	15.7	0.2	0.024	14.3	0.1	1.9	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|124027230|ref|YP_001012550.1|	-	0.0098	15.7	0.0	0.022	14.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|124027230|ref|YP_001012550.1|	-	0.016	14.8	0.1	0.033	13.7	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124027230|ref|YP_001012550.1|	-	0.04	13.5	1.0	0.1	12.2	0.1	1.9	2	1	0	2	2	2	0	NACHT	domain
AAA_10	PF12846.2	gi|124027230|ref|YP_001012550.1|	-	0.044	13.2	0.1	0.084	12.2	0.0	1.4	1	1	0	1	1	1	0	AAA-like	domain
AAA_14	PF13173.1	gi|124027230|ref|YP_001012550.1|	-	0.048	13.5	0.0	0.16	11.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF3584	PF12128.3	gi|124027230|ref|YP_001012550.1|	-	0.053	10.8	0.0	0.061	10.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
UPF0079	PF02367.12	gi|124027230|ref|YP_001012550.1|	-	0.054	13.1	0.1	0.098	12.2	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_24	PF13479.1	gi|124027230|ref|YP_001012550.1|	-	0.065	12.8	0.0	0.087	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|124027230|ref|YP_001012550.1|	-	0.089	11.8	0.1	0.15	11.1	0.1	1.3	1	0	0	1	1	1	0	Zeta	toxin
ABC_ATPase	PF09818.4	gi|124027230|ref|YP_001012550.1|	-	0.13	10.8	0.0	0.25	9.8	0.0	1.4	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
Arch_ATPase	PF01637.13	gi|124027230|ref|YP_001012550.1|	-	0.14	11.8	0.0	0.31	10.7	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
BPD_transp_1	PF00528.17	gi|124027231|ref|YP_001012551.1|	-	6.3e-11	42.1	15.8	7.6e-11	41.8	10.9	1.1	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3918	PF13056.1	gi|124027231|ref|YP_001012551.1|	-	0.086	12.1	0.1	0.78	9.1	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3918)
PBP_like_2	PF12849.2	gi|124027232|ref|YP_001012552.1|	-	1.9e-18	66.9	0.0	2.6e-18	66.4	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.1	gi|124027232|ref|YP_001012552.1|	-	8.9e-08	32.0	0.0	2.7e-06	27.1	0.0	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|124027232|ref|YP_001012552.1|	-	5.4e-06	25.4	0.0	8.5e-06	24.8	0.0	1.3	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.20	gi|124027232|ref|YP_001012552.1|	-	6.9e-06	26.0	0.0	4.6e-05	23.2	0.0	2.1	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
LysR_substrate	PF03466.15	gi|124027232|ref|YP_001012552.1|	-	0.0013	17.9	0.0	0.0027	16.8	0.0	1.5	2	0	0	2	2	2	1	LysR	substrate	binding	domain
SBP_bac_8	PF13416.1	gi|124027232|ref|YP_001012552.1|	-	0.039	13.6	0.0	0.79	9.4	0.0	2.1	1	1	1	2	2	2	0	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|124027233|ref|YP_001012553.1|	-	1.3e-45	154.7	0.0	1.9e-45	154.2	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
HTH_1	PF00126.22	gi|124027233|ref|YP_001012553.1|	-	7.5e-12	44.8	0.3	2.1e-11	43.3	0.2	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
RNA_binding	PF01877.12	gi|124027234|ref|YP_001012554.1|	-	4.2e-18	65.4	0.0	5.2e-18	65.2	0.0	1.1	1	0	0	1	1	1	1	RNA	binding
Ax_dynein_light	PF10211.4	gi|124027234|ref|YP_001012554.1|	-	0.063	13.1	0.0	5.3	6.8	0.0	2.0	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
AAA_18	PF13238.1	gi|124027235|ref|YP_001012555.1|	-	8.9e-15	55.1	0.0	1.2e-14	54.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027235|ref|YP_001012555.1|	-	2.1e-10	41.4	0.0	3.2e-10	40.8	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124027235|ref|YP_001012555.1|	-	1.2e-08	34.9	0.0	1.8e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|124027235|ref|YP_001012555.1|	-	0.00011	21.3	0.0	0.00014	20.9	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.1	gi|124027235|ref|YP_001012555.1|	-	0.026	14.5	0.2	0.041	13.8	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.1	gi|124027235|ref|YP_001012555.1|	-	0.038	13.7	0.9	0.39	10.5	0.3	2.8	2	1	0	2	2	2	0	Part	of	AAA	domain
ApbA_C	PF08546.6	gi|124027235|ref|YP_001012555.1|	-	0.05	13.5	0.0	0.22	11.5	0.0	1.8	1	1	1	2	2	2	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
AAA_10	PF12846.2	gi|124027235|ref|YP_001012555.1|	-	0.084	12.2	0.3	2.5	7.4	0.2	2.1	2	0	0	2	2	2	0	AAA-like	domain
Mg_chelatase	PF01078.16	gi|124027235|ref|YP_001012555.1|	-	0.091	11.9	0.2	0.12	11.5	0.1	1.3	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
CoaE	PF01121.15	gi|124027235|ref|YP_001012555.1|	-	0.11	11.9	0.1	2.1	7.6	0.0	2.2	1	1	1	2	2	2	0	Dephospho-CoA	kinase
Cytidylate_kin2	PF13189.1	gi|124027235|ref|YP_001012555.1|	-	0.12	12.2	0.3	0.87	9.4	0.2	2.2	1	1	0	1	1	1	0	Cytidylate	kinase-like	family
DUF4350	PF14258.1	gi|124027235|ref|YP_001012555.1|	-	0.12	12.5	0.2	0.8	9.9	0.0	2.4	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
PGM_PMM_II	PF02879.11	gi|124027235|ref|YP_001012555.1|	-	0.13	12.5	0.0	0.34	11.2	0.0	1.6	2	0	0	2	2	2	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
DUF2075	PF09848.4	gi|124027235|ref|YP_001012555.1|	-	0.14	11.1	0.0	0.15	10.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RPAP1_N	PF08621.5	gi|124027235|ref|YP_001012555.1|	-	1.4	8.5	3.8	3.6	7.2	0.1	2.6	3	0	0	3	3	3	0	RPAP1-like,	N-terminal
LRV	PF01816.12	gi|124027236|ref|YP_001012556.1|	-	1.8	8.9	5.6	4.8	7.5	3.9	1.7	1	0	0	1	1	1	0	Leucine	rich	repeat	variant
DUF137	PF02006.11	gi|124027240|ref|YP_001012560.1|	-	1.6e-80	268.7	0.7	1.9e-80	268.4	0.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
TPP_enzyme_M	PF00205.17	gi|124027240|ref|YP_001012560.1|	-	0.04	13.6	1.5	0.17	11.6	0.4	2.2	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
DUF479	PF04336.7	gi|124027240|ref|YP_001012560.1|	-	0.052	13.6	0.1	0.1	12.7	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF479
CN_hydrolase	PF00795.17	gi|124027241|ref|YP_001012561.1|	-	5.7e-14	51.8	0.0	8e-14	51.4	0.0	1.2	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Methyltransf_11	PF08241.7	gi|124027242|ref|YP_001012563.1|	-	1.4e-10	41.4	0.0	2.2e-10	40.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|124027242|ref|YP_001012563.1|	-	1.4e-07	31.4	0.0	1.8e-07	30.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124027242|ref|YP_001012563.1|	-	0.071	12.7	0.0	0.43	10.1	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124027242|ref|YP_001012563.1|	-	0.094	13.2	0.0	0.22	11.9	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
DUF87	PF01935.12	gi|124027244|ref|YP_001012564.1|	-	3e-32	112.2	0.0	7.7e-31	107.6	0.0	2.3	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|124027244|ref|YP_001012564.1|	-	1.6e-17	63.9	0.0	3.7e-17	62.7	0.0	1.6	1	1	0	1	1	1	1	AAA-like	domain
FtsK_SpoIIIE	PF01580.13	gi|124027244|ref|YP_001012564.1|	-	4e-09	36.2	0.0	0.00044	19.7	0.0	2.8	2	1	1	3	3	3	2	FtsK/SpoIIIE	family
DUF853	PF05872.7	gi|124027244|ref|YP_001012564.1|	-	5.2e-09	34.9	0.3	0.0012	17.2	0.0	2.3	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|124027244|ref|YP_001012564.1|	-	1.3e-06	27.3	0.0	6.3e-06	25.0	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.9	gi|124027244|ref|YP_001012564.1|	-	1.7e-05	23.5	0.0	2.7e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
Zot	PF05707.7	gi|124027244|ref|YP_001012564.1|	-	0.00013	21.4	0.0	0.031	13.7	0.0	2.3	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
HAS-barrel	PF09378.5	gi|124027244|ref|YP_001012564.1|	-	0.00063	19.6	1.2	0.0022	17.8	0.1	2.6	3	0	0	3	3	2	1	HAS	barrel	domain
ResIII	PF04851.10	gi|124027244|ref|YP_001012564.1|	-	0.00067	19.5	0.1	0.0025	17.6	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|124027244|ref|YP_001012564.1|	-	0.0033	16.9	0.0	0.013	14.9	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA	PF00004.24	gi|124027244|ref|YP_001012564.1|	-	0.0076	16.4	0.2	0.056	13.6	0.0	2.5	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|124027244|ref|YP_001012564.1|	-	0.07	13.2	0.0	2.4	8.3	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
CbiA	PF01656.18	gi|124027244|ref|YP_001012564.1|	-	0.11	11.9	0.0	0.21	10.9	0.0	1.5	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Radical_SAM	PF04055.16	gi|124027245|ref|YP_001012565.1|	-	5.2e-14	52.7	0.2	4.1e-13	49.8	0.0	2.3	2	1	0	2	2	2	1	Radical	SAM	superfamily
Met_10	PF02475.11	gi|124027245|ref|YP_001012565.1|	-	0.04	13.5	0.0	0.07	12.7	0.0	1.3	1	0	0	1	1	1	0	Met-10+	like-protein
RsbU_N	PF08673.5	gi|124027245|ref|YP_001012565.1|	-	0.098	12.6	0.0	0.26	11.3	0.0	1.7	1	0	0	1	1	1	0	Phosphoserine	phosphatase	RsbU,	N-terminal	domain
DUF364	PF04016.7	gi|124027246|ref|YP_001012566.1|	-	4.1e-30	104.0	0.0	5.5e-30	103.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF364)
DUF4213	PF13938.1	gi|124027246|ref|YP_001012566.1|	-	3.4e-15	55.9	0.1	5.5e-15	55.2	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4213)
AdoHcyase_NAD	PF00670.16	gi|124027246|ref|YP_001012566.1|	-	0.0012	18.7	0.1	0.0018	18.1	0.0	1.2	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
MS_channel	PF00924.13	gi|124027247|ref|YP_001012567.1|	-	6.3e-52	175.9	0.0	9.8e-52	175.2	0.0	1.3	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.7	gi|124027247|ref|YP_001012567.1|	-	0.0016	18.0	1.2	0.003	17.1	0.6	1.7	1	1	0	1	1	1	1	Conserved	TM	helix
ETC_C1_NDUFA5	PF04716.9	gi|124027247|ref|YP_001012567.1|	-	0.056	12.9	0.0	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	ETC	complex	I	subunit	conserved	region
DUF3464	PF11947.3	gi|124027247|ref|YP_001012567.1|	-	0.058	12.8	4.2	0.1	12.0	2.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3464)
DUF4083	PF13314.1	gi|124027247|ref|YP_001012567.1|	-	0.7	9.7	4.1	0.26	11.1	0.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
AFOR_C	PF01314.13	gi|124027248|ref|YP_001012568.1|	-	8.2e-124	413.1	0.0	1e-123	412.8	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|124027248|ref|YP_001012568.1|	-	3.1e-75	251.9	0.1	4.4e-75	251.4	0.0	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Metallophos	PF00149.23	gi|124027249|ref|YP_001012569.1|	-	8.3e-30	103.6	0.0	1.1e-29	103.3	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|124027249|ref|YP_001012569.1|	-	3e-07	30.4	0.0	3.2e-07	30.3	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Amidohydro_2	PF04909.9	gi|124027249|ref|YP_001012569.1|	-	0.058	12.9	0.1	6	6.3	0.0	2.1	1	1	0	2	2	2	0	Amidohydrolase
Apolipoprotein	PF01442.13	gi|124027251|ref|YP_001012571.1|	-	2.1e-05	24.1	16.7	3.3e-05	23.4	11.5	1.4	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
AAA_13	PF13166.1	gi|124027251|ref|YP_001012571.1|	-	0.0045	15.5	6.4	0.0061	15.0	4.5	1.1	1	0	0	1	1	1	1	AAA	domain
ERM	PF00769.14	gi|124027251|ref|YP_001012571.1|	-	0.0064	16.0	15.0	0.0064	16.0	10.4	1.9	1	1	1	2	2	2	1	Ezrin/radixin/moesin	family
VIT1	PF01988.14	gi|124027251|ref|YP_001012571.1|	-	0.009	15.5	0.5	0.021	14.2	0.3	1.7	1	0	0	1	1	1	1	VIT	family
DUF4407	PF14362.1	gi|124027251|ref|YP_001012571.1|	-	0.011	14.7	5.0	0.016	14.2	3.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Baculo_PEP_C	PF04513.7	gi|124027251|ref|YP_001012571.1|	-	0.029	14.2	0.7	5.1	6.9	0.0	2.9	1	1	2	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
eIF-4B	PF06273.6	gi|124027251|ref|YP_001012571.1|	-	0.041	12.6	6.2	0.075	11.7	4.3	1.3	1	0	0	1	1	1	0	Plant	specific	eukaryotic	initiation	factor	4B
TMPIT	PF07851.8	gi|124027251|ref|YP_001012571.1|	-	0.1	11.6	2.7	0.098	11.7	0.3	1.9	1	1	1	2	2	2	0	TMPIT-like	protein
Sec8_exocyst	PF04048.9	gi|124027251|ref|YP_001012571.1|	-	0.13	11.8	3.0	0.19	11.3	0.0	2.3	2	1	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Phage_Mu_Gam	PF07352.7	gi|124027251|ref|YP_001012571.1|	-	0.15	11.5	9.7	1.5	8.3	0.1	2.5	1	1	1	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
Mst1_SARAH	PF11629.3	gi|124027251|ref|YP_001012571.1|	-	0.27	11.1	5.7	0.92	9.3	2.6	2.9	2	0	0	2	2	2	0	C	terminal	SARAH	domain	of	Mst1
CorA	PF01544.13	gi|124027251|ref|YP_001012571.1|	-	0.53	9.2	12.1	0.17	10.8	5.6	2.0	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Exonuc_VII_L	PF02601.10	gi|124027251|ref|YP_001012571.1|	-	0.69	9.0	8.3	2	7.5	5.8	1.6	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
DUF2721	PF11026.3	gi|124027251|ref|YP_001012571.1|	-	1.1	8.9	7.9	0.18	11.4	2.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
Fzo_mitofusin	PF04799.8	gi|124027251|ref|YP_001012571.1|	-	1.5	8.2	5.8	1.8	7.8	2.4	2.0	1	1	1	2	2	2	0	fzo-like	conserved	region
AKNA	PF12443.3	gi|124027251|ref|YP_001012571.1|	-	2	8.4	4.3	6	6.9	1.3	2.5	1	1	1	2	2	2	0	AT-hook-containing	transcription	factor
HAMP	PF00672.20	gi|124027251|ref|YP_001012571.1|	-	2.3	8.4	6.2	23	5.2	1.1	3.0	3	0	0	3	3	2	0	HAMP	domain
Mnd1	PF03962.10	gi|124027251|ref|YP_001012571.1|	-	2.8	7.5	13.0	7.4	6.1	8.5	2.1	1	1	0	1	1	1	0	Mnd1	family
DUF848	PF05852.6	gi|124027251|ref|YP_001012571.1|	-	3.2	7.6	10.6	14	5.5	5.0	2.6	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DHH	PF01368.15	gi|124027252|ref|YP_001012572.1|	-	0.015	14.8	0.0	0.052	13.2	0.0	1.7	1	1	0	1	1	1	0	DHH	family
SIP1	PF04938.7	gi|124027252|ref|YP_001012572.1|	-	0.055	12.8	0.1	0.14	11.4	0.0	1.7	2	0	0	2	2	2	0	Survival	motor	neuron	(SMN)	interacting	protein	1	(SIP1)
DUF432	PF04254.8	gi|124027253|ref|YP_001012573.1|	-	1.4e-28	99.2	0.0	1.9e-28	98.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
MS_channel	PF00924.13	gi|124027254|ref|YP_001012574.1|	-	2.5e-61	206.6	0.2	3.4e-61	206.1	0.2	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
DUF3792	PF12670.2	gi|124027255|ref|YP_001012575.1|	-	7.8	6.3	31.8	1.3	8.9	3.7	3.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3792)
DUF2232	PF09991.4	gi|124027255|ref|YP_001012575.1|	-	9.2	5.1	14.7	13	4.6	10.2	1.3	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2232)
AAA_22	PF13401.1	gi|124027256|ref|YP_001012576.1|	-	0.0075	16.4	0.4	0.076	13.1	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
AAA	PF00004.24	gi|124027256|ref|YP_001012576.1|	-	0.013	15.6	0.0	0.048	13.8	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Citrate_synt	PF00285.16	gi|124027256|ref|YP_001012576.1|	-	0.062	12.0	0.2	0.12	11.1	0.2	1.4	1	0	0	1	1	1	0	Citrate	synthase
AAA_10	PF12846.2	gi|124027256|ref|YP_001012576.1|	-	0.069	12.5	0.0	5.6	6.3	0.0	2.5	2	1	0	2	2	2	0	AAA-like	domain
DUF2791	PF10923.3	gi|124027256|ref|YP_001012576.1|	-	0.09	11.3	0.0	0.2	10.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_18	PF13238.1	gi|124027256|ref|YP_001012576.1|	-	0.096	12.9	0.0	0.19	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|124027256|ref|YP_001012576.1|	-	0.1	12.0	0.0	0.22	10.9	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|124027256|ref|YP_001012576.1|	-	0.12	13.2	0.0	0.46	11.3	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|124027256|ref|YP_001012576.1|	-	0.35	10.4	0.0	0.54	9.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Baculo_PEP_C	PF04513.7	gi|124027256|ref|YP_001012576.1|	-	0.41	10.4	1.2	14	5.4	0.8	2.9	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4507	PF14964.1	gi|124027257|ref|YP_001012577.1|	-	0.0076	15.0	0.2	0.011	14.5	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4507)
Nterm_IS4	PF13006.2	gi|124027257|ref|YP_001012577.1|	-	0.013	15.5	0.9	1.1	9.3	0.0	3.1	3	1	0	3	3	3	0	Insertion	element	4	transposase	N-terminal
Ribosomal_L22	PF00237.14	gi|124027257|ref|YP_001012577.1|	-	0.013	15.3	1.1	0.028	14.3	0.2	2.1	2	1	0	2	2	2	0	Ribosomal	protein	L22p/L17e
ScpA_ScpB	PF02616.9	gi|124027257|ref|YP_001012577.1|	-	0.026	14.0	3.9	1.2	8.6	2.7	2.1	1	1	0	1	1	1	0	ScpA/B	protein
MCPsignal	PF00015.16	gi|124027257|ref|YP_001012577.1|	-	0.044	13.3	3.7	0.13	11.7	1.7	2.3	2	1	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Talin_middle	PF09141.5	gi|124027257|ref|YP_001012577.1|	-	0.05	13.2	0.7	6.6	6.3	0.0	2.7	2	0	0	2	2	2	0	Talin,	middle	domain
Reo_sigmaC	PF04582.7	gi|124027257|ref|YP_001012577.1|	-	0.15	11.2	1.8	0.29	10.2	0.7	1.7	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
tRNA_bind	PF01588.15	gi|124027259|ref|YP_001012579.1|	-	8.5e-06	25.5	0.0	1.6e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
ABC_tran	PF00005.22	gi|124027260|ref|YP_001012580.1|	-	2.3e-24	86.2	0.0	3.5e-24	85.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027260|ref|YP_001012580.1|	-	1.6e-11	44.7	0.0	4.9e-06	26.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027260|ref|YP_001012580.1|	-	1.9e-07	30.5	0.0	0.0008	18.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|124027260|ref|YP_001012580.1|	-	1.6e-06	27.4	0.0	0.0001	21.5	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
MobB	PF03205.9	gi|124027260|ref|YP_001012580.1|	-	0.0048	16.6	0.1	0.009	15.7	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SbcCD_C	PF13558.1	gi|124027260|ref|YP_001012580.1|	-	0.0093	15.8	0.1	0.27	11.1	0.0	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.1	gi|124027260|ref|YP_001012580.1|	-	0.012	15.6	0.4	0.035	14.0	0.3	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.1	gi|124027260|ref|YP_001012580.1|	-	0.012	15.3	1.4	0.012	15.3	1.0	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_23	PF13476.1	gi|124027260|ref|YP_001012580.1|	-	0.014	15.7	0.0	0.022	15.0	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|124027260|ref|YP_001012580.1|	-	0.028	14.1	0.1	0.13	11.9	0.0	1.9	2	0	0	2	2	2	0	Archaeal	ATPase
Zeta_toxin	PF06414.7	gi|124027260|ref|YP_001012580.1|	-	0.034	13.2	0.0	0.048	12.7	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
DUF3584	PF12128.3	gi|124027260|ref|YP_001012580.1|	-	0.035	11.4	0.1	0.045	11.0	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_29	PF13555.1	gi|124027260|ref|YP_001012580.1|	-	0.043	13.3	0.0	0.078	12.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.7	gi|124027260|ref|YP_001012580.1|	-	0.044	13.4	0.2	0.18	11.4	0.1	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA	PF00004.24	gi|124027260|ref|YP_001012580.1|	-	0.045	13.9	0.3	0.7	10.0	0.1	2.3	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|124027260|ref|YP_001012580.1|	-	0.046	13.1	0.1	0.076	12.4	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.1	gi|124027260|ref|YP_001012580.1|	-	0.051	13.4	0.1	0.067	13.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|124027260|ref|YP_001012580.1|	-	0.051	13.0	0.0	0.059	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
AAA_22	PF13401.1	gi|124027260|ref|YP_001012580.1|	-	0.072	13.2	0.1	0.32	11.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|124027260|ref|YP_001012580.1|	-	0.12	11.9	0.1	0.19	11.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Resolvase	PF00239.16	gi|124027260|ref|YP_001012580.1|	-	0.16	11.8	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Resolvase,	N	terminal	domain
TroA	PF01297.12	gi|124027261|ref|YP_001012581.1|	-	5e-27	94.7	0.0	6.5e-27	94.3	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	solute	binding	protein	family
PucR	PF07905.6	gi|124027261|ref|YP_001012581.1|	-	0.014	14.9	0.0	0.028	13.9	0.0	1.5	1	0	0	1	1	1	0	Purine	catabolism	regulatory	protein-like	family
ABC-3	PF00950.12	gi|124027262|ref|YP_001012582.1|	-	1e-19	70.8	32.7	1.4e-19	70.4	22.6	1.2	1	0	0	1	1	1	1	ABC	3	transport	family
RHH_3	PF12651.2	gi|124027263|ref|YP_001012583.1|	-	3.2e-10	39.5	0.1	4.6e-10	39.0	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
NikR_C	PF08753.6	gi|124027263|ref|YP_001012583.1|	-	3.6e-07	29.9	0.6	1.7e-06	27.7	0.0	2.2	1	1	2	3	3	3	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|124027263|ref|YP_001012583.1|	-	8.6e-05	22.2	0.2	0.00015	21.4	0.2	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ACT_6	PF13740.1	gi|124027263|ref|YP_001012583.1|	-	0.083	12.6	0.0	1.7	8.3	0.0	2.2	2	0	0	2	2	2	0	ACT	domain
DSPc	PF00782.15	gi|124027264|ref|YP_001012584.1|	-	1e-07	31.5	0.0	2e-07	30.6	0.0	1.5	2	0	0	2	2	2	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.22	gi|124027264|ref|YP_001012584.1|	-	0.00033	20.0	0.0	0.0005	19.4	0.0	1.2	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
CDKN3	PF05706.7	gi|124027264|ref|YP_001012584.1|	-	0.12	11.7	0.0	0.22	10.9	0.0	1.3	1	0	0	1	1	1	0	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
Lon_C	PF05362.8	gi|124027265|ref|YP_001012585.1|	-	5.3e-09	35.6	0.1	1.1e-08	34.6	0.1	1.5	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
ChlI	PF13541.1	gi|124027265|ref|YP_001012585.1|	-	0.049	13.1	0.0	0.14	11.6	0.0	1.8	1	0	0	1	1	1	0	Subunit	ChlI	of	Mg-chelatase
ADH_zinc_N	PF00107.21	gi|124027266|ref|YP_001012586.1|	-	0.1	12.1	0.1	0.17	11.4	0.0	1.4	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
NrfD	PF03916.9	gi|124027267|ref|YP_001012587.1|	-	6.7e-14	52.0	30.0	6.7e-14	52.0	20.8	1.9	3	1	0	3	3	3	1	Polysulphide	reductase,	NrfD
Chordopox_A13L	PF05961.6	gi|124027267|ref|YP_001012587.1|	-	0.1	12.5	0.0	0.28	11.1	0.0	1.7	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
DUF4407	PF14362.1	gi|124027267|ref|YP_001012587.1|	-	9.3	5.0	17.4	0.084	11.8	3.0	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4407)
Fer4_11	PF13247.1	gi|124027268|ref|YP_001012588.1|	-	4.5e-20	71.3	19.0	2.4e-19	69.0	9.8	2.9	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124027268|ref|YP_001012588.1|	-	3.2e-15	56.2	26.0	1.4e-07	31.7	6.9	2.7	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124027268|ref|YP_001012588.1|	-	1.1e-11	44.3	36.7	8.7e-06	25.4	9.6	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124027268|ref|YP_001012588.1|	-	1.7e-11	43.3	33.0	1.9e-06	27.4	1.8	4.8	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|124027268|ref|YP_001012588.1|	-	1.2e-10	41.5	25.8	9.3e-06	25.8	6.3	3.3	1	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124027268|ref|YP_001012588.1|	-	1.3e-10	40.4	39.5	1.5e-07	30.7	1.5	5.7	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124027268|ref|YP_001012588.1|	-	6.4e-09	35.2	43.6	1.4e-05	24.7	2.6	5.4	5	1	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|124027268|ref|YP_001012588.1|	-	3.8e-07	30.1	45.2	0.015	15.8	4.5	4.2	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|124027268|ref|YP_001012588.1|	-	1.5e-06	28.1	23.8	0.0024	17.8	5.5	3.0	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124027268|ref|YP_001012588.1|	-	8.2e-05	22.6	37.1	0.00025	21.1	1.7	4.6	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124027268|ref|YP_001012588.1|	-	0.00031	20.5	24.9	0.0011	18.8	2.5	3.4	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124027268|ref|YP_001012588.1|	-	0.00054	20.2	26.8	0.62	10.4	5.2	4.0	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124027268|ref|YP_001012588.1|	-	0.0013	19.2	0.1	0.0013	19.2	0.1	3.9	4	1	0	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|124027268|ref|YP_001012588.1|	-	0.011	16.4	26.9	1.2	9.9	1.6	3.7	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|124027268|ref|YP_001012588.1|	-	0.053	13.9	3.8	0.053	13.9	2.6	4.0	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.17	gi|124027269|ref|YP_001012589.1|	-	4.4e-39	134.4	0.0	2.7e-38	131.8	0.0	2.0	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|124027269|ref|YP_001012589.1|	-	1.4e-10	40.9	0.0	3.9e-10	39.5	0.0	1.7	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
TAT_signal	PF10518.4	gi|124027269|ref|YP_001012589.1|	-	0.00013	21.6	0.0	0.00034	20.3	0.0	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
MerR_1	PF13411.1	gi|124027269|ref|YP_001012589.1|	-	0.0058	16.3	0.0	0.017	14.8	0.0	1.8	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
CDC48_N	PF02359.13	gi|124027269|ref|YP_001012589.1|	-	0.012	15.5	0.0	0.029	14.2	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Molybdop_Fe4S4	PF04879.11	gi|124027269|ref|YP_001012589.1|	-	0.048	13.4	0.1	0.092	12.5	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
UCR_Fe-S_N	PF10399.4	gi|124027269|ref|YP_001012589.1|	-	0.2	10.8	0.0	0.2	10.8	0.0	1.8	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TFX_C	PF14601.1	gi|124027270|ref|YP_001012590.1|	-	2.2e-09	36.9	0.0	3.1e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.11	gi|124027270|ref|YP_001012590.1|	-	9.3e-05	21.6	0.2	0.00015	21.0	0.2	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|124027270|ref|YP_001012590.1|	-	0.00021	20.8	0.2	0.00038	20.0	0.2	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.7	gi|124027270|ref|YP_001012590.1|	-	0.0017	17.7	0.1	0.0029	17.0	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
UPF0122	PF04297.9	gi|124027270|ref|YP_001012590.1|	-	0.0097	15.9	0.0	0.014	15.3	0.0	1.2	1	0	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DUF2774	PF11242.3	gi|124027270|ref|YP_001012590.1|	-	0.02	14.8	0.0	0.064	13.2	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2774)
HTH_AsnC-type	PF13404.1	gi|124027270|ref|YP_001012590.1|	-	0.033	13.7	0.0	0.076	12.5	0.0	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|124027270|ref|YP_001012590.1|	-	0.035	13.7	0.0	0.064	12.9	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.1	gi|124027270|ref|YP_001012590.1|	-	0.046	13.7	0.2	0.09	12.8	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027270|ref|YP_001012590.1|	-	0.055	12.8	0.0	0.12	11.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|124027270|ref|YP_001012590.1|	-	0.091	12.4	0.2	0.37	10.4	0.0	1.9	2	0	0	2	2	2	0	HTH	domain
HTH_IclR	PF09339.5	gi|124027270|ref|YP_001012590.1|	-	0.096	12.2	0.0	0.21	11.1	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_38	PF13936.1	gi|124027270|ref|YP_001012590.1|	-	0.12	11.9	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MerR-DNA-bind	PF09278.6	gi|124027270|ref|YP_001012590.1|	-	0.28	11.5	1.7	0.77	10.2	0.2	2.0	2	0	0	2	2	2	0	MerR,	DNA	binding
SBP_bac_11	PF13531.1	gi|124027271|ref|YP_001012591.1|	-	9.3e-46	156.3	0.5	1.1e-45	156.0	0.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|124027271|ref|YP_001012591.1|	-	8.9e-15	55.2	0.1	1.8e-07	31.1	0.0	2.1	1	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|124027271|ref|YP_001012591.1|	-	4.2e-10	39.8	0.0	0.0001	22.1	0.0	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|124027271|ref|YP_001012591.1|	-	2.7e-06	26.4	0.0	3.6e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	PBP	superfamily	domain
Phosphonate-bd	PF12974.2	gi|124027271|ref|YP_001012591.1|	-	0.00059	19.2	0.1	0.00083	18.8	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
BPD_transp_1	PF00528.17	gi|124027272|ref|YP_001012592.1|	-	1.7e-13	50.4	13.4	1.7e-13	50.4	9.3	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|124027273|ref|YP_001012593.1|	-	3.2e-35	121.3	0.0	4.5e-35	120.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027273|ref|YP_001012593.1|	-	3.4e-18	66.6	0.0	1.4e-08	35.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|124027273|ref|YP_001012593.1|	-	5.9e-10	38.7	0.0	8.4e-05	21.7	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.14	gi|124027273|ref|YP_001012593.1|	-	3.7e-08	32.8	0.0	0.0028	16.9	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|124027273|ref|YP_001012593.1|	-	2e-07	31.1	0.2	8.5e-07	29.1	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124027273|ref|YP_001012593.1|	-	3.2e-06	26.5	0.1	7e-06	25.4	0.1	1.6	1	1	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|124027273|ref|YP_001012593.1|	-	1.1e-05	25.8	0.0	1.5e-05	25.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|124027273|ref|YP_001012593.1|	-	1.3e-05	24.8	0.2	0.015	14.7	0.1	2.1	2	0	0	2	2	2	2	AAA-like	domain
NACHT	PF05729.7	gi|124027273|ref|YP_001012593.1|	-	4.6e-05	23.1	0.3	0.0021	17.7	0.0	2.1	2	0	0	2	2	2	1	NACHT	domain
AAA_25	PF13481.1	gi|124027273|ref|YP_001012593.1|	-	8.2e-05	22.0	0.3	0.011	15.1	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|124027273|ref|YP_001012593.1|	-	9.1e-05	22.6	0.1	0.0011	19.0	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|124027273|ref|YP_001012593.1|	-	0.00012	21.8	0.1	0.00024	20.8	0.1	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|124027273|ref|YP_001012593.1|	-	0.00034	20.3	0.1	0.00034	20.3	0.1	2.0	3	0	0	3	3	1	1	Part	of	AAA	domain
AAA_33	PF13671.1	gi|124027273|ref|YP_001012593.1|	-	0.00039	20.3	0.2	0.0041	16.9	0.2	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|124027273|ref|YP_001012593.1|	-	0.0005	19.7	0.1	0.0019	17.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|124027273|ref|YP_001012593.1|	-	0.00052	20.2	0.0	0.0078	16.4	0.0	2.2	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.1	gi|124027273|ref|YP_001012593.1|	-	0.00093	18.8	0.4	0.19	11.2	0.2	2.2	2	0	0	2	2	2	1	AAA	domain
KaiC	PF06745.8	gi|124027273|ref|YP_001012593.1|	-	0.0013	17.9	0.2	0.21	10.6	0.0	2.1	2	0	0	2	2	2	1	KaiC
MobB	PF03205.9	gi|124027273|ref|YP_001012593.1|	-	0.0015	18.2	0.2	0.003	17.2	0.1	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
T2SE	PF00437.15	gi|124027273|ref|YP_001012593.1|	-	0.0021	16.9	0.2	0.0034	16.3	0.1	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_14	PF13173.1	gi|124027273|ref|YP_001012593.1|	-	0.0026	17.6	0.0	0.011	15.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.17	gi|124027273|ref|YP_001012593.1|	-	0.0048	15.7	0.1	0.039	12.8	0.1	1.9	2	0	0	2	2	2	1	NB-ARC	domain
SbcCD_C	PF13558.1	gi|124027273|ref|YP_001012593.1|	-	0.0062	16.4	0.0	0.059	13.2	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_17	PF13207.1	gi|124027273|ref|YP_001012593.1|	-	0.0067	17.2	0.9	0.011	16.5	0.6	1.8	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|124027273|ref|YP_001012593.1|	-	0.0073	15.4	0.0	0.011	14.8	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
AAA_13	PF13166.1	gi|124027273|ref|YP_001012593.1|	-	0.009	14.5	0.0	0.011	14.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|124027273|ref|YP_001012593.1|	-	0.012	15.9	0.0	0.036	14.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|124027273|ref|YP_001012593.1|	-	0.015	14.4	0.0	0.034	13.3	0.0	1.5	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
DUF258	PF03193.11	gi|124027273|ref|YP_001012593.1|	-	0.016	14.4	0.1	0.026	13.7	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ABC_ATPase	PF09818.4	gi|124027273|ref|YP_001012593.1|	-	0.017	13.7	0.1	1.2	7.6	0.3	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
cobW	PF02492.14	gi|124027273|ref|YP_001012593.1|	-	0.017	14.5	0.1	0.028	13.8	0.1	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_5	PF07728.9	gi|124027273|ref|YP_001012593.1|	-	0.025	14.2	0.1	0.27	10.9	0.0	2.3	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
UPF0079	PF02367.12	gi|124027273|ref|YP_001012593.1|	-	0.036	13.7	0.1	0.071	12.7	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|124027273|ref|YP_001012593.1|	-	0.036	14.0	0.2	0.13	12.2	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
RNA12	PF10443.4	gi|124027273|ref|YP_001012593.1|	-	0.046	12.2	0.0	0.055	11.9	0.0	1.1	1	0	0	1	1	1	0	RNA12	protein
Miro	PF08477.8	gi|124027273|ref|YP_001012593.1|	-	0.054	13.9	0.0	0.11	13.0	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
MutS_V	PF00488.16	gi|124027273|ref|YP_001012593.1|	-	0.063	12.6	0.0	0.099	12.0	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
NTPase_1	PF03266.10	gi|124027273|ref|YP_001012593.1|	-	0.065	12.9	0.1	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	NTPase
DLIC	PF05783.6	gi|124027273|ref|YP_001012593.1|	-	0.17	10.5	0.0	0.22	10.1	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
SRP54	PF00448.17	gi|124027273|ref|YP_001012593.1|	-	0.17	11.3	0.2	0.27	10.6	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF498	PF04430.9	gi|124027274|ref|YP_001012594.1|	-	2.2e-19	69.0	0.0	2.6e-19	68.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF498/DUF598)
DUF1136	PF06582.7	gi|124027274|ref|YP_001012594.1|	-	0.069	12.8	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Repeat	of	unknown	function	(DUF1136)
DUF2540	PF10802.3	gi|124027274|ref|YP_001012594.1|	-	0.14	11.8	0.3	4.6	6.9	0.0	2.6	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2540)
RNA_POL_M_15KD	PF02150.11	gi|124027275|ref|YP_001012595.1|	-	6.7e-08	32.0	0.1	1e-07	31.5	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
DUF2387	PF09526.5	gi|124027275|ref|YP_001012595.1|	-	0.00064	19.5	1.0	0.0018	18.1	0.7	1.9	1	1	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
zf-ribbon_3	PF13248.1	gi|124027275|ref|YP_001012595.1|	-	0.002	17.2	0.6	0.15	11.2	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.2	gi|124027275|ref|YP_001012595.1|	-	0.015	15.0	0.2	0.024	14.4	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|124027275|ref|YP_001012595.1|	-	0.017	14.2	1.3	0.053	12.7	0.9	1.9	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-NADH-PPase	PF09297.6	gi|124027275|ref|YP_001012595.1|	-	0.025	14.0	6.1	0.32	10.5	4.2	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|124027275|ref|YP_001012595.1|	-	0.042	13.5	3.1	0.15	11.7	2.1	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.1	gi|124027275|ref|YP_001012595.1|	-	0.058	12.8	3.9	1.2	8.6	0.8	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|124027275|ref|YP_001012595.1|	-	0.062	13.0	3.3	2.8	7.7	0.6	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Baculo_ME53	PF06061.6	gi|124027275|ref|YP_001012595.1|	-	0.095	11.6	0.4	0.11	11.4	0.2	1.3	1	1	0	1	1	1	0	Baculoviridae	ME53
OrfB_Zn_ribbon	PF07282.6	gi|124027275|ref|YP_001012595.1|	-	0.13	11.9	0.3	0.25	11.0	0.2	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_ribbon_recom	PF13408.1	gi|124027275|ref|YP_001012595.1|	-	0.16	12.2	3.3	0.51	10.6	2.2	1.9	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124027275|ref|YP_001012595.1|	-	0.2	11.2	0.9	2	8.0	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Mu-like_Com	PF10122.4	gi|124027275|ref|YP_001012595.1|	-	0.21	10.6	3.8	1.7	7.7	0.1	2.3	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zinc_ribbon_4	PF13717.1	gi|124027275|ref|YP_001012595.1|	-	0.21	11.2	1.0	2.1	8.0	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|124027275|ref|YP_001012595.1|	-	0.23	11.1	1.5	2.7	7.7	0.1	2.5	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Lar_restr_allev	PF14354.1	gi|124027275|ref|YP_001012595.1|	-	0.26	11.6	1.6	0.53	10.6	1.1	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF2082	PF09855.4	gi|124027275|ref|YP_001012595.1|	-	0.27	11.0	2.1	0.35	10.7	0.1	2.0	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
TF_Zn_Ribbon	PF08271.7	gi|124027275|ref|YP_001012595.1|	-	3.1	7.1	4.8	59	3.1	3.3	2.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-Mss51	PF13824.1	gi|124027275|ref|YP_001012595.1|	-	5.3	6.9	6.8	12	5.7	0.3	2.7	2	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
PYNP_C	PF07831.8	gi|124027276|ref|YP_001012596.1|	-	4.7e-18	64.4	0.2	3.9e-15	55.0	0.0	2.8	2	0	0	2	2	2	2	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
Glycos_transf_3	PF00591.16	gi|124027276|ref|YP_001012596.1|	-	1.7e-09	37.4	0.1	6.6e-09	35.5	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|124027276|ref|YP_001012596.1|	-	6.2e-09	35.3	0.3	2.1e-08	33.6	0.2	2.0	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
Molydop_binding	PF01568.16	gi|124027276|ref|YP_001012596.1|	-	0.0022	17.8	0.1	0.0045	16.7	0.1	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
DUF2254	PF10011.4	gi|124027276|ref|YP_001012596.1|	-	0.0051	15.3	0.0	0.013	13.9	0.0	1.6	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2254)
Biotin_lipoyl	PF00364.17	gi|124027276|ref|YP_001012596.1|	-	0.013	15.1	0.0	2.1	8.0	0.0	3.1	3	0	0	3	3	3	0	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.1	gi|124027276|ref|YP_001012596.1|	-	0.066	12.8	0.0	0.24	11.1	0.0	1.9	1	0	0	1	1	1	0	Biotin-lipoyl	like
Spermine_synth	PF01564.12	gi|124027278|ref|YP_001012598.1|	-	1.1e-58	198.0	0.0	1.5e-58	197.6	0.0	1.0	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_18	PF12847.2	gi|124027278|ref|YP_001012598.1|	-	7.1e-09	36.2	0.0	1.3e-08	35.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124027278|ref|YP_001012598.1|	-	1.3e-08	34.8	0.0	2.4e-08	33.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_30	PF05430.6	gi|124027278|ref|YP_001012598.1|	-	1.4e-05	24.7	0.0	2.4e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_12	PF08242.7	gi|124027278|ref|YP_001012598.1|	-	5.1e-05	23.6	0.0	0.00012	22.4	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124027278|ref|YP_001012598.1|	-	0.00013	21.5	0.0	0.0002	20.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|124027278|ref|YP_001012598.1|	-	0.00013	21.3	0.0	0.00019	20.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|124027278|ref|YP_001012598.1|	-	0.00019	21.7	0.0	0.00033	20.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|124027278|ref|YP_001012598.1|	-	0.0012	17.9	0.0	0.0018	17.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.7	gi|124027278|ref|YP_001012598.1|	-	0.0045	17.4	0.1	0.056	13.9	0.0	2.6	2	1	0	2	2	2	1	Methyltransferase	domain
DUF43	PF01861.11	gi|124027278|ref|YP_001012598.1|	-	0.01	14.8	0.0	0.014	14.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF43
NAD_binding_7	PF13241.1	gi|124027278|ref|YP_001012598.1|	-	0.01	16.0	0.0	0.022	14.9	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|124027278|ref|YP_001012598.1|	-	0.1	12.5	0.0	0.2	11.6	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
AAA_10	PF12846.2	gi|124027279|ref|YP_001012599.1|	-	5.9e-31	108.0	0.0	7.3e-31	107.7	0.0	1.1	1	0	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|124027279|ref|YP_001012599.1|	-	4.5e-17	62.6	0.0	1e-16	61.4	0.0	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|124027279|ref|YP_001012599.1|	-	3.9e-12	45.5	0.0	2.5e-05	23.0	0.0	2.3	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.7	gi|124027279|ref|YP_001012599.1|	-	1.7e-08	33.2	0.1	2e-05	23.1	0.0	2.4	3	0	0	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_22	PF13401.1	gi|124027279|ref|YP_001012599.1|	-	4.2e-05	23.7	4.7	0.06	13.4	0.1	2.9	3	1	0	3	3	2	2	AAA	domain
TraG-D_C	PF12696.2	gi|124027279|ref|YP_001012599.1|	-	0.00017	21.4	0.0	0.00033	20.5	0.0	1.5	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
FtsK_SpoIIIE	PF01580.13	gi|124027279|ref|YP_001012599.1|	-	0.00083	18.8	0.1	0.018	14.5	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
Zot	PF05707.7	gi|124027279|ref|YP_001012599.1|	-	0.00083	18.8	0.1	0.064	12.7	0.0	2.3	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_19	PF13245.1	gi|124027279|ref|YP_001012599.1|	-	0.0015	18.2	0.1	0.0052	16.5	0.1	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
ResIII	PF04851.10	gi|124027279|ref|YP_001012599.1|	-	0.003	17.4	0.0	0.03	14.1	0.0	2.1	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.1	gi|124027279|ref|YP_001012599.1|	-	0.0033	17.4	1.0	1.7	8.6	0.2	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
PhoH	PF02562.11	gi|124027279|ref|YP_001012599.1|	-	0.0067	15.6	1.4	2	7.5	0.1	2.4	2	1	0	2	2	2	2	PhoH-like	protein
CbiA	PF01656.18	gi|124027279|ref|YP_001012599.1|	-	0.0068	15.8	0.0	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_30	PF13604.1	gi|124027279|ref|YP_001012599.1|	-	0.0091	15.5	0.1	1.7	8.1	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|124027279|ref|YP_001012599.1|	-	0.018	14.4	0.0	0.039	13.3	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
MobB	PF03205.9	gi|124027279|ref|YP_001012599.1|	-	0.029	14.0	0.0	0.067	12.8	0.0	1.6	2	0	0	2	2	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.17	gi|124027279|ref|YP_001012599.1|	-	0.04	13.3	0.0	0.073	12.5	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|124027279|ref|YP_001012599.1|	-	0.042	13.2	0.1	0.29	10.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|124027279|ref|YP_001012599.1|	-	0.048	14.4	0.0	0.12	13.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124027279|ref|YP_001012599.1|	-	0.13	11.9	0.3	0.57	9.8	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
AAA_28	PF13521.1	gi|124027279|ref|YP_001012599.1|	-	0.13	12.2	0.2	0.33	10.8	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
LigT_PEase	PF02834.11	gi|124027280|ref|YP_001012600.1|	-	2.3e-32	110.8	0.2	7.5e-16	57.8	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.1	gi|124027280|ref|YP_001012600.1|	-	2.8e-15	56.3	0.0	3.4e-15	56.0	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|124027280|ref|YP_001012600.1|	-	1.9e-13	50.5	0.0	7.5e-13	48.6	0.0	1.7	1	1	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.4	gi|124027280|ref|YP_001012600.1|	-	0.0011	18.0	0.0	0.012	14.6	0.0	1.9	1	1	1	2	2	2	1	Uncharacterised	conserved	protein
DUF504	PF04457.7	gi|124027281|ref|YP_001012601.1|	-	2.1e-14	53.3	1.7	2.8e-14	52.9	1.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF504)
Secretin_N	PF03958.12	gi|124027282|ref|YP_001012602.1|	-	0.025	14.7	0.3	0.082	13.0	0.2	2.2	1	1	0	1	1	1	0	Bacterial	type	II/III	secretion	system	short	domain
Hydrolase	PF00702.21	gi|124027283|ref|YP_001012603.1|	-	4.1e-12	46.9	0.0	9.3e-12	45.8	0.0	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|124027283|ref|YP_001012603.1|	-	1.7e-10	41.4	0.0	1.9e-10	41.1	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|124027283|ref|YP_001012603.1|	-	7.7e-08	32.2	0.0	6.6e-06	25.8	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|124027283|ref|YP_001012603.1|	-	1.6e-07	31.7	0.0	4.4e-07	30.2	0.0	1.7	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|124027283|ref|YP_001012603.1|	-	0.019	14.2	0.0	0.036	13.3	0.0	1.4	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
TGS	PF02824.16	gi|124027285|ref|YP_001012605.1|	-	5.6e-22	77.3	0.0	1e-21	76.4	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1	PF01926.18	gi|124027285|ref|YP_001012605.1|	-	5.8e-16	58.4	0.0	1.5e-14	53.9	0.0	2.3	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|124027285|ref|YP_001012605.1|	-	4.1e-10	39.1	0.0	7.3e-10	38.3	0.0	1.5	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|124027285|ref|YP_001012605.1|	-	0.00031	20.2	0.0	0.57	9.5	0.0	3.1	2	1	0	3	3	3	1	Elongation	factor	Tu	GTP	binding	domain
Miro	PF08477.8	gi|124027285|ref|YP_001012605.1|	-	0.013	15.9	0.0	0.04	14.4	0.0	1.8	2	0	0	2	2	2	0	Miro-like	protein
YchF-GTPase_C	PF06071.8	gi|124027285|ref|YP_001012605.1|	-	0.023	14.4	0.1	0.28	10.9	0.0	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF933)
AAA_28	PF13521.1	gi|124027285|ref|YP_001012605.1|	-	0.023	14.6	0.1	0.19	11.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|124027285|ref|YP_001012605.1|	-	0.026	13.2	0.0	3.4	6.3	0.0	2.3	2	0	0	2	2	2	0	ArgK	protein
Arf	PF00025.16	gi|124027285|ref|YP_001012605.1|	-	0.027	13.7	0.0	2.8	7.1	0.0	2.4	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
MobB	PF03205.9	gi|124027285|ref|YP_001012605.1|	-	0.038	13.6	0.0	4	7.1	0.0	2.8	2	1	1	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ABC_tran	PF00005.22	gi|124027285|ref|YP_001012605.1|	-	0.062	13.6	0.1	7.7	6.8	0.0	2.5	2	0	0	2	2	2	0	ABC	transporter
SRPRB	PF09439.5	gi|124027285|ref|YP_001012605.1|	-	0.1	11.8	0.0	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Mg_chelatase	PF01078.16	gi|124027285|ref|YP_001012605.1|	-	0.13	11.3	0.0	0.34	10.0	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
PPV_E1_C	PF00519.12	gi|124027285|ref|YP_001012605.1|	-	0.24	9.9	0.0	0.46	9.0	0.0	1.4	1	0	0	1	1	1	0	Papillomavirus	helicase
AMMECR1	PF01871.12	gi|124027287|ref|YP_001012607.1|	-	2.9e-56	189.2	0.0	3.5e-56	188.9	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
Nol1_Nop2_Fmu	PF01189.12	gi|124027288|ref|YP_001012608.1|	-	1.4e-13	50.8	0.0	1.7e-13	50.5	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_26	PF13659.1	gi|124027288|ref|YP_001012608.1|	-	0.0019	18.2	0.3	0.0033	17.4	0.2	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
DUF346	PF03984.8	gi|124027288|ref|YP_001012608.1|	-	0.11	11.9	0.0	0.28	10.6	0.0	1.6	1	0	0	1	1	1	0	Repeat	of	unknown	function	(DUF346)
Thymidylate_kin	PF02223.12	gi|124027289|ref|YP_001012609.1|	-	4.1e-31	107.7	0.0	5.2e-31	107.4	0.0	1.1	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.1	gi|124027289|ref|YP_001012609.1|	-	2.2e-06	27.9	0.3	1.2e-05	25.6	0.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|124027289|ref|YP_001012609.1|	-	0.00012	22.0	0.0	0.00018	21.5	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
dNK	PF01712.14	gi|124027289|ref|YP_001012609.1|	-	0.0008	19.3	0.0	0.0013	18.6	0.0	1.5	1	1	0	1	1	1	1	Deoxynucleoside	kinase
AAA_33	PF13671.1	gi|124027289|ref|YP_001012609.1|	-	0.0013	18.5	0.0	0.0021	17.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027289|ref|YP_001012609.1|	-	0.019	15.8	0.4	0.049	14.4	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
FMN_red	PF03358.10	gi|124027290|ref|YP_001012610.1|	-	1.8e-26	92.4	0.5	3.8e-26	91.4	0.0	1.6	2	0	0	2	2	2	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.12	gi|124027290|ref|YP_001012610.1|	-	2.9e-12	46.5	0.0	4.6e-12	45.8	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
Asparaginase_2	PF01112.13	gi|124027291|ref|YP_001012611.1|	-	1.2e-54	185.2	1.0	1.6e-54	184.8	0.7	1.1	1	0	0	1	1	1	1	Asparaginase
Ribosomal_60s	PF00428.14	gi|124027292|ref|YP_001012612.1|	-	1e-18	67.5	19.5	1.3e-18	67.2	13.5	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
PepSY_2	PF13670.1	gi|124027292|ref|YP_001012612.1|	-	0.0012	18.7	6.1	0.44	10.4	0.1	2.3	2	0	0	2	2	2	2	Peptidase	propeptide	and	YPEB	domain
LIN37	PF15306.1	gi|124027292|ref|YP_001012612.1|	-	0.03	14.3	1.5	0.037	14.0	1.0	1.1	1	0	0	1	1	1	0	LIN37
DUF177	PF02620.12	gi|124027292|ref|YP_001012612.1|	-	0.11	12.5	1.4	0.13	12.2	0.9	1.1	1	0	0	1	1	1	0	Uncharacterized	ACR,	COG1399
DUF3682	PF12446.3	gi|124027292|ref|YP_001012612.1|	-	0.19	12.0	6.3	0.3	11.3	4.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3682)
DUF1456	PF07308.8	gi|124027292|ref|YP_001012612.1|	-	0.26	11.3	0.9	1.1	9.4	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1456)
DUF1682	PF07946.9	gi|124027292|ref|YP_001012612.1|	-	6.8	5.4	9.8	6.7	5.4	5.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1682)
TIP49	PF06068.8	gi|124027294|ref|YP_001012614.1|	-	6.4e-168	558.5	1.9	7.6e-168	558.3	1.3	1.0	1	0	0	1	1	1	1	TIP49	C-terminus
AAA	PF00004.24	gi|124027294|ref|YP_001012614.1|	-	1.1e-10	41.8	0.5	2.8e-07	30.7	0.1	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|124027294|ref|YP_001012614.1|	-	1.7e-08	34.6	1.0	0.0041	17.1	0.0	2.9	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027294|ref|YP_001012614.1|	-	7.3e-07	29.3	0.0	0.023	14.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
RuvB_N	PF05496.7	gi|124027294|ref|YP_001012614.1|	-	1.2e-06	27.7	3.7	8.8e-05	21.6	0.0	3.3	3	1	0	3	3	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
ATP-synt_ab	PF00006.20	gi|124027294|ref|YP_001012614.1|	-	0.00032	20.2	0.1	0.00055	19.5	0.0	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Sigma54_activat	PF00158.21	gi|124027294|ref|YP_001012614.1|	-	0.00044	19.7	0.2	0.0061	16.0	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_19	PF13245.1	gi|124027294|ref|YP_001012614.1|	-	0.001	18.7	0.8	0.0045	16.7	0.6	2.2	1	1	0	1	1	1	1	Part	of	AAA	domain
AAA_18	PF13238.1	gi|124027294|ref|YP_001012614.1|	-	0.0011	19.2	0.0	0.0029	17.9	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|124027294|ref|YP_001012614.1|	-	0.0012	18.5	0.1	0.011	15.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|124027294|ref|YP_001012614.1|	-	0.0018	17.7	0.3	0.015	14.7	0.1	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124027294|ref|YP_001012614.1|	-	0.0021	18.8	2.3	0.008	16.9	1.6	2.4	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|124027294|ref|YP_001012614.1|	-	0.0035	16.7	0.1	0.0072	15.7	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|124027294|ref|YP_001012614.1|	-	0.0071	16.2	0.2	0.025	14.4	0.0	2.1	2	1	0	2	2	1	1	AAA	domain
DBI_PRT	PF02277.12	gi|124027294|ref|YP_001012614.1|	-	0.0078	15.3	1.2	0.013	14.6	0.8	1.3	1	0	0	1	1	1	1	Phosphoribosyltransferase
AAA_30	PF13604.1	gi|124027294|ref|YP_001012614.1|	-	0.015	14.8	1.2	1	8.9	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.11	gi|124027294|ref|YP_001012614.1|	-	0.025	13.7	0.2	0.058	12.6	0.1	1.6	1	0	0	1	1	1	0	PhoH-like	protein
NACHT	PF05729.7	gi|124027294|ref|YP_001012614.1|	-	0.032	13.8	0.2	0.081	12.5	0.0	1.7	2	0	0	2	2	1	0	NACHT	domain
ResIII	PF04851.10	gi|124027294|ref|YP_001012614.1|	-	0.034	13.9	0.8	0.078	12.8	0.0	1.9	3	0	0	3	3	2	0	Type	III	restriction	enzyme,	res	subunit
DUF2075	PF09848.4	gi|124027294|ref|YP_001012614.1|	-	0.037	12.9	0.1	0.058	12.3	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.1	gi|124027294|ref|YP_001012614.1|	-	0.04	13.8	0.0	1.4	8.8	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|124027294|ref|YP_001012614.1|	-	0.041	14.1	0.0	0.082	13.2	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_28	PF13521.1	gi|124027294|ref|YP_001012614.1|	-	0.045	13.7	1.8	0.09	12.7	0.0	2.4	3	0	0	3	3	2	0	AAA	domain
IPT	PF01745.11	gi|124027294|ref|YP_001012614.1|	-	0.05	12.7	0.1	0.11	11.5	0.1	1.5	1	0	0	1	1	1	0	Isopentenyl	transferase
Mg_chelatase	PF01078.16	gi|124027294|ref|YP_001012614.1|	-	0.072	12.2	1.1	0.22	10.6	0.2	2.0	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.9	gi|124027294|ref|YP_001012614.1|	-	0.082	12.6	0.0	0.35	10.5	0.0	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DnaB_C	PF03796.10	gi|124027294|ref|YP_001012614.1|	-	0.12	11.2	0.1	0.52	9.1	0.0	1.9	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
TFIID-31kDa	PF02291.10	gi|124027294|ref|YP_001012614.1|	-	0.15	11.8	0.1	1.6	8.5	0.0	2.2	2	0	0	2	2	2	0	Transcription	initiation	factor	IID,	31kD	subunit
AAA_32	PF13654.1	gi|124027294|ref|YP_001012614.1|	-	0.15	10.6	2.5	3.8	6.0	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|124027294|ref|YP_001012614.1|	-	0.19	11.2	0.1	0.4	10.2	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PAPS_reduct	PF01507.14	gi|124027295|ref|YP_001012615.1|	-	3.9e-31	108.2	0.0	5.9e-31	107.6	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.12	gi|124027295|ref|YP_001012615.1|	-	0.00083	18.3	0.0	0.0014	17.5	0.0	1.3	1	0	0	1	1	1	1	NAD	synthase
ATP_bind_4	PF01902.12	gi|124027295|ref|YP_001012615.1|	-	0.0012	18.3	0.0	0.002	17.5	0.0	1.3	1	0	0	1	1	1	1	ATP-binding	region
Usp	PF00582.21	gi|124027295|ref|YP_001012615.1|	-	0.024	14.8	0.6	0.056	13.6	0.1	1.9	2	0	0	2	2	2	0	Universal	stress	protein	family
QueC	PF06508.8	gi|124027295|ref|YP_001012615.1|	-	0.031	13.5	0.0	0.057	12.6	0.0	1.4	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
rve	PF00665.21	gi|124027295|ref|YP_001012615.1|	-	0.063	13.3	0.0	0.98	9.5	0.0	2.3	2	0	0	2	2	2	0	Integrase	core	domain
PAPS_reduct	PF01507.14	gi|124027296|ref|YP_001012616.1|	-	8e-10	38.8	0.0	1.2e-09	38.2	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_3	PF01171.15	gi|124027296|ref|YP_001012616.1|	-	6.8e-05	22.4	0.0	0.00011	21.7	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
ATP_bind_4	PF01902.12	gi|124027296|ref|YP_001012616.1|	-	0.04	13.2	0.0	0.1	11.9	0.0	1.6	1	0	0	1	1	1	0	ATP-binding	region
BPD_transp_1	PF00528.17	gi|124027297|ref|YP_001012617.1|	-	8.6e-05	22.1	16.7	8.6e-05	22.1	11.6	3.7	2	2	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.1	gi|124027298|ref|YP_001012618.1|	-	2.8e-17	62.8	0.0	5.3e-17	61.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|124027298|ref|YP_001012618.1|	-	2.2e-10	40.7	0.0	4e-10	39.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|124027298|ref|YP_001012618.1|	-	2.2e-09	37.4	0.0	5.9e-09	36.0	0.0	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|124027298|ref|YP_001012618.1|	-	2.1e-07	30.8	0.0	6.6e-07	29.1	0.0	1.8	3	0	0	3	3	3	1	Bacterial	extracellular	solute-binding	protein
DUF3117	PF11314.3	gi|124027298|ref|YP_001012618.1|	-	0.039	13.4	0.0	0.28	10.7	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3117)
PmbA_TldD	PF01523.11	gi|124027300|ref|YP_001012620.1|	-	1.6e-71	241.0	3.6	2e-71	240.6	2.5	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.11	gi|124027301|ref|YP_001012621.1|	-	4e-65	219.9	5.5	4e-65	219.9	3.8	1.5	2	0	0	2	2	2	1	Putative	modulator	of	DNA	gyrase
Rhomboid	PF01694.17	gi|124027302|ref|YP_001012622.1|	-	8.4e-32	110.2	18.6	8.4e-32	110.2	12.9	2.7	3	0	0	3	3	3	1	Rhomboid	family
DUF1751	PF08551.5	gi|124027302|ref|YP_001012622.1|	-	0.002	18.4	0.3	0.002	18.4	0.2	2.7	2	1	1	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
DUF1469	PF07332.6	gi|124027303|ref|YP_001012623.1|	-	0.00068	19.3	0.6	0.001	18.8	0.4	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1469)
DUF2254	PF10011.4	gi|124027303|ref|YP_001012623.1|	-	0.0014	17.1	0.0	0.0016	17.0	0.0	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2254)
MFS_1	PF07690.11	gi|124027303|ref|YP_001012623.1|	-	0.0017	17.1	0.0	0.0019	17.0	0.0	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
IncA	PF04156.9	gi|124027303|ref|YP_001012623.1|	-	0.0099	15.4	4.2	0.015	14.8	0.0	2.0	2	0	0	2	2	2	1	IncA	protein
Cytochrom_B_N	PF00033.14	gi|124027303|ref|YP_001012623.1|	-	0.04	13.2	0.1	0.047	13.0	0.1	1.1	1	0	0	1	1	1	0	Cytochrome	b(N-terminal)/b6/petB
DPM2	PF07297.7	gi|124027303|ref|YP_001012623.1|	-	0.065	13.5	3.1	0.14	12.4	2.2	1.7	1	1	0	1	1	1	0	Dolichol	phosphate-mannose	biosynthesis	regulatory	protein	(DPM2)
NrfD	PF03916.9	gi|124027303|ref|YP_001012623.1|	-	0.1	11.9	1.4	0.13	11.6	1.0	1.0	1	0	0	1	1	1	0	Polysulphide	reductase,	NrfD
PIG-P	PF08510.7	gi|124027303|ref|YP_001012623.1|	-	0.11	12.0	0.0	0.18	11.4	0.0	1.4	1	1	0	1	1	1	0	PIG-P
MscS_TM	PF12794.2	gi|124027303|ref|YP_001012623.1|	-	0.18	10.3	1.3	0.3	9.6	0.9	1.3	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	inner	membrane	domain	1
RPN7	PF10602.4	gi|124027303|ref|YP_001012623.1|	-	1.1	8.6	3.4	1.6	8.0	2.3	1.3	1	0	0	1	1	1	0	26S	proteasome	subunit	RPN7
DUF4229	PF14012.1	gi|124027303|ref|YP_001012623.1|	-	3	7.8	6.0	0.46	10.4	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
AP_endonuc_2	PF01261.19	gi|124027304|ref|YP_001012624.1|	-	1.3e-17	63.7	0.0	1.6e-17	63.4	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
NAD_binding_8	PF13450.1	gi|124027305|ref|YP_001012625.1|	-	0.013	15.4	1.2	0.071	13.1	0.3	2.5	1	1	1	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|124027305|ref|YP_001012625.1|	-	0.02	13.7	0.3	0.025	13.4	0.2	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox	PF00070.22	gi|124027305|ref|YP_001012625.1|	-	0.027	14.8	0.1	0.062	13.7	0.1	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|124027305|ref|YP_001012625.1|	-	0.049	13.2	0.1	0.069	12.8	0.1	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|124027305|ref|YP_001012625.1|	-	0.074	12.6	0.1	0.13	11.8	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_N	PF08240.7	gi|124027305|ref|YP_001012625.1|	-	0.11	12.2	0.0	0.67	9.7	0.0	2.1	1	1	1	2	2	2	0	Alcohol	dehydrogenase	GroES-like	domain
FAD_binding_3	PF01494.14	gi|124027305|ref|YP_001012625.1|	-	0.14	11.1	0.1	0.23	10.4	0.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Aminotran_1_2	PF00155.16	gi|124027306|ref|YP_001012626.1|	-	1.9e-43	148.8	0.0	2.2e-43	148.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.2	gi|124027306|ref|YP_001012626.1|	-	2.9e-11	42.5	0.0	2.7e-10	39.4	0.0	2.0	1	1	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Beta_elim_lyase	PF01212.16	gi|124027306|ref|YP_001012626.1|	-	1e-06	28.1	0.0	1.5e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
PDDEXK_1	PF12705.2	gi|124027307|ref|YP_001012627.1|	-	0.0015	17.9	0.1	0.0034	16.7	0.0	1.8	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
KaiC	PF06745.8	gi|124027309|ref|YP_001012629.1|	-	7.1e-87	290.2	0.0	8e-87	290.0	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|124027309|ref|YP_001012629.1|	-	3.4e-12	46.1	0.0	4.6e-12	45.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|124027309|ref|YP_001012629.1|	-	1.8e-05	23.2	0.1	7e-05	21.3	0.0	1.8	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_19	PF13245.1	gi|124027309|ref|YP_001012629.1|	-	0.003	17.2	1.1	0.0058	16.3	0.2	1.8	2	0	0	2	2	2	1	Part	of	AAA	domain
T2SE	PF00437.15	gi|124027309|ref|YP_001012629.1|	-	0.013	14.4	0.0	0.023	13.5	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RecA	PF00154.16	gi|124027309|ref|YP_001012629.1|	-	0.022	13.8	0.1	0.38	9.7	0.0	2.6	3	0	0	3	3	3	0	recA	bacterial	DNA	recombination	protein
DnaB_C	PF03796.10	gi|124027309|ref|YP_001012629.1|	-	0.028	13.2	0.0	0.044	12.6	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
AAA_22	PF13401.1	gi|124027309|ref|YP_001012629.1|	-	0.088	12.9	0.1	0.2	11.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.4	gi|124027309|ref|YP_001012629.1|	-	0.13	11.2	0.0	0.14	11.1	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_17	PF13207.1	gi|124027309|ref|YP_001012629.1|	-	0.14	12.9	0.2	0.59	10.9	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|124027309|ref|YP_001012629.1|	-	0.18	12.0	0.4	0.33	11.1	0.3	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2299	PF10061.4	gi|124027310|ref|YP_001012630.1|	-	2e-36	124.4	0.0	2.3e-36	124.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
Na_H_Exchanger	PF00999.16	gi|124027311|ref|YP_001012631.1|	-	6e-27	94.1	42.2	7.9e-27	93.7	29.2	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
CBS	PF00571.23	gi|124027311|ref|YP_001012631.1|	-	1.2e-05	25.0	3.8	0.016	15.0	0.5	2.6	1	1	1	2	2	2	2	CBS	domain
DNA_ligase_A_M	PF01068.16	gi|124027312|ref|YP_001012632.1|	-	6.2e-58	195.4	0.0	1e-57	194.8	0.0	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.9	gi|124027312|ref|YP_001012632.1|	-	1.6e-52	177.8	0.4	2.5e-52	177.2	0.3	1.3	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.10	gi|124027312|ref|YP_001012632.1|	-	4.4e-30	103.9	0.0	1.1e-29	102.7	0.0	1.7	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
DNA_ligase_OB_2	PF14743.1	gi|124027312|ref|YP_001012632.1|	-	0.0016	18.1	0.9	0.063	12.9	0.1	2.9	3	0	0	3	3	3	1	DNA	ligase	OB-like	domain
Death	PF00531.17	gi|124027312|ref|YP_001012632.1|	-	0.12	12.1	0.0	0.29	10.9	0.0	1.7	1	0	0	1	1	1	0	Death	domain
DZR	PF12773.2	gi|124027314|ref|YP_001012634.1|	-	0.0056	16.4	4.3	0.051	13.3	3.0	2.1	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF1272	PF06906.6	gi|124027314|ref|YP_001012634.1|	-	0.0061	16.3	5.9	0.015	15.1	4.1	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zinc-ribbons_6	PF07191.7	gi|124027314|ref|YP_001012634.1|	-	0.023	14.4	3.8	0.68	9.7	2.6	2.1	1	1	0	1	1	1	0	zinc-ribbons
Prok-RING_1	PF14446.1	gi|124027314|ref|YP_001012634.1|	-	0.035	13.8	4.7	1.8	8.3	2.2	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-H2C2_2	PF13465.1	gi|124027314|ref|YP_001012634.1|	-	0.06	13.6	5.6	5	7.6	0.2	3.3	3	0	0	3	3	3	0	Zinc-finger	double	domain
Ribosomal_S14	PF00253.16	gi|124027314|ref|YP_001012634.1|	-	0.066	12.5	0.5	4.8	6.6	0.1	2.3	2	0	0	2	2	2	0	Ribosomal	protein	S14p/S29e
Rad50_zn_hook	PF04423.9	gi|124027314|ref|YP_001012634.1|	-	0.096	12.1	1.9	0.41	10.1	0.1	2.1	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
CFC	PF09443.5	gi|124027314|ref|YP_001012634.1|	-	0.12	12.0	4.0	0.62	9.7	0.3	2.4	2	0	0	2	2	2	0	Cripto_Frl-1_Cryptic	(CFC)
zf-C4_ClpX	PF06689.8	gi|124027314|ref|YP_001012634.1|	-	0.12	11.9	1.3	4.9	6.7	0.0	2.6	3	0	0	3	3	3	0	ClpX	C4-type	zinc	finger
Sgf11	PF08209.6	gi|124027314|ref|YP_001012634.1|	-	0.12	11.6	5.5	2	7.7	0.1	3.0	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
zf-Sec23_Sec24	PF04810.10	gi|124027314|ref|YP_001012634.1|	-	0.26	10.8	5.5	1	8.9	2.2	2.5	2	1	0	2	2	2	0	Sec23/Sec24	zinc	finger
zinc_ribbon_2	PF13240.1	gi|124027314|ref|YP_001012634.1|	-	0.31	10.5	0.1	0.31	10.5	0.1	3.2	2	1	1	3	3	3	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|124027314|ref|YP_001012634.1|	-	0.43	10.5	9.4	0.31	11.0	4.3	2.2	2	1	0	2	2	2	0	Zinc	ribbon	domain
C1_2	PF03107.11	gi|124027314|ref|YP_001012634.1|	-	0.47	10.6	10.5	0.073	13.1	3.5	2.1	2	1	0	2	2	2	0	C1	domain
zf-AN1	PF01428.11	gi|124027314|ref|YP_001012634.1|	-	0.56	10.1	5.9	33	4.4	2.0	2.8	1	1	2	3	3	3	0	AN1-like	Zinc	finger
C1_3	PF07649.7	gi|124027314|ref|YP_001012634.1|	-	0.56	10.2	9.9	0.18	11.8	1.6	2.7	2	1	1	3	3	3	0	C1-like	domain
TF_Zn_Ribbon	PF08271.7	gi|124027314|ref|YP_001012634.1|	-	0.62	9.4	5.5	0.69	9.2	1.9	2.3	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-Di19	PF05605.7	gi|124027314|ref|YP_001012634.1|	-	0.63	10.2	11.4	1	9.5	0.1	3.4	2	1	1	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C3HC4_3	PF13920.1	gi|124027314|ref|YP_001012634.1|	-	0.99	9.1	8.6	19	5.0	5.9	2.5	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-BED	PF02892.10	gi|124027314|ref|YP_001012634.1|	-	1	9.1	8.4	8.7	6.2	0.0	3.0	2	1	1	3	3	3	0	BED	zinc	finger
DUF2296	PF10058.4	gi|124027314|ref|YP_001012634.1|	-	1.1	9.1	8.5	0.62	9.8	4.0	1.9	1	1	1	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Cript	PF10235.4	gi|124027314|ref|YP_001012634.1|	-	1.6	9.1	6.0	1.2	9.5	1.4	1.9	1	1	1	2	2	2	0	Microtubule-associated	protein	CRIPT
zf-RING_2	PF13639.1	gi|124027314|ref|YP_001012634.1|	-	2.8	7.8	6.1	5.7	6.8	4.2	1.6	1	1	0	1	1	1	0	Ring	finger	domain
zf-RING_5	PF14634.1	gi|124027314|ref|YP_001012634.1|	-	7.4	6.3	7.7	65	3.3	5.3	2.4	1	1	0	1	1	1	0	zinc-RING	finger	domain
Cys_rich_CPXG	PF14255.1	gi|124027314|ref|YP_001012634.1|	-	7.7	6.4	11.0	2.7	7.8	0.1	3.1	3	0	0	3	3	3	0	Cysteine-rich	CPXCG
Metallophos_2	PF12850.2	gi|124027315|ref|YP_001012635.1|	-	2e-17	63.4	0.0	2.8e-17	62.9	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|124027315|ref|YP_001012635.1|	-	2.5e-14	53.1	0.0	6.7e-14	51.7	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|124027315|ref|YP_001012635.1|	-	9.4e-12	44.6	2.0	3.3e-09	36.2	0.1	2.8	1	1	1	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
MR_MLE_C	PF13378.1	gi|124027315|ref|YP_001012635.1|	-	0.0093	15.9	0.1	0.021	14.7	0.1	1.6	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
VWA_CoxE	PF05762.9	gi|124027315|ref|YP_001012635.1|	-	0.052	12.6	0.0	0.093	11.8	0.0	1.3	1	0	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
Voltage_CLC	PF00654.15	gi|124027316|ref|YP_001012636.1|	-	6.1e-82	275.4	33.2	6.1e-82	275.4	23.0	2.0	1	1	1	2	2	2	1	Voltage	gated	chloride	channel
CBS	PF00571.23	gi|124027316|ref|YP_001012636.1|	-	8.2e-34	115.1	6.7	5.9e-17	61.1	0.1	2.7	2	0	0	2	2	2	2	CBS	domain
GAF_2	PF13185.1	gi|124027316|ref|YP_001012636.1|	-	0.022	15.2	0.0	0.078	13.4	0.0	1.9	1	0	0	1	1	1	0	GAF	domain
Transglut_i_TM	PF14400.1	gi|124027317|ref|YP_001012637.1|	-	0.15	11.5	0.5	0.67	9.4	0.1	1.9	2	0	0	2	2	2	0	Inactive	transglutaminase	fused	to	7	transmembrane	helices
DUF2383	PF09537.5	gi|124027317|ref|YP_001012637.1|	-	0.27	11.4	2.0	0.74	10.0	0.0	2.5	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF2383)
SPOUT_MTase_2	PF14419.1	gi|124027318|ref|YP_001012638.1|	-	6.7e-78	259.8	1.8	5e-76	253.7	0.4	2.1	2	0	0	2	2	2	2	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
THUMP	PF02926.12	gi|124027318|ref|YP_001012638.1|	-	1.3e-22	80.2	1.1	3.7e-22	78.7	0.4	1.9	2	0	0	2	2	2	1	THUMP	domain
Ribosomal_S3Ae	PF01015.13	gi|124027319|ref|YP_001012639.1|	-	6.7e-74	247.4	0.3	7.5e-74	247.2	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
TAFII28	PF04719.9	gi|124027319|ref|YP_001012639.1|	-	0.72	9.6	3.1	18	5.2	0.1	2.3	2	0	0	2	2	2	0	hTAFII28-like	protein	conserved	region
Pcc1	PF09341.5	gi|124027320|ref|YP_001012640.1|	-	5.5e-05	23.1	0.0	7e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Transcription	factor	Pcc1
RecX	PF02631.11	gi|124027320|ref|YP_001012640.1|	-	0.08	13.1	0.0	0.08	13.1	0.0	1.3	1	1	0	1	1	1	0	RecX	family
Ribosomal_S13_N	PF08069.7	gi|124027322|ref|YP_001012642.1|	-	2e-25	88.4	0.1	3.5e-25	87.5	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.17	gi|124027322|ref|YP_001012642.1|	-	4.1e-19	68.1	0.2	5.8e-19	67.6	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S15
GAGA	PF09237.6	gi|124027322|ref|YP_001012642.1|	-	0.1	12.2	0.6	2.6	7.7	0.1	2.3	2	0	0	2	2	2	0	GAGA	factor
Ham1p_like	PF01725.11	gi|124027323|ref|YP_001012643.1|	-	1.6e-56	190.6	0.0	1.8e-56	190.4	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
DUF3236	PF11576.3	gi|124027323|ref|YP_001012643.1|	-	0.014	14.7	0.0	0.023	14.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3236)
APH	PF01636.18	gi|124027324|ref|YP_001012644.1|	-	7.2e-13	48.8	1.5	2.9e-07	30.4	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
RIO1	PF01163.17	gi|124027324|ref|YP_001012644.1|	-	8.9e-12	44.7	0.0	1.4e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
Kdo	PF06293.9	gi|124027324|ref|YP_001012644.1|	-	2.3e-10	39.8	0.1	5.3e-10	38.7	0.0	1.6	2	1	0	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.20	gi|124027324|ref|YP_001012644.1|	-	8.9e-09	34.8	0.0	1.1e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|124027324|ref|YP_001012644.1|	-	4.1e-05	22.7	0.0	7.5e-05	21.9	0.0	1.5	1	1	0	1	1	1	1	Protein	tyrosine	kinase
WaaY	PF06176.6	gi|124027324|ref|YP_001012644.1|	-	6.3e-05	22.3	0.0	9.9e-05	21.6	0.0	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
EcKinase	PF02958.15	gi|124027324|ref|YP_001012644.1|	-	0.014	14.5	0.0	0.022	13.8	0.0	1.3	1	0	0	1	1	1	0	Ecdysteroid	kinase
Beta-lactamase2	PF13354.1	gi|124027324|ref|YP_001012644.1|	-	0.017	14.6	0.0	0.059	12.8	0.0	1.7	2	0	0	2	2	2	0	Beta-lactamase	enzyme	family
Choline_kinase	PF01633.15	gi|124027324|ref|YP_001012644.1|	-	0.14	11.7	0.0	0.24	10.9	0.0	1.5	1	1	0	1	1	1	0	Choline/ethanolamine	kinase
Peptidase_M22	PF00814.20	gi|124027325|ref|YP_001012645.1|	-	3.4e-73	246.4	0.2	4.2e-73	246.1	0.2	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Staygreen	PF12638.2	gi|124027325|ref|YP_001012645.1|	-	0.11	12.0	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	Staygreen	protein
Ribosomal_S27	PF01599.14	gi|124027326|ref|YP_001012646.1|	-	1.2e-09	37.8	1.8	1.6e-09	37.4	1.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
TF_Zn_Ribbon	PF08271.7	gi|124027326|ref|YP_001012646.1|	-	0.0048	16.1	4.7	0.63	9.4	0.0	2.9	2	1	0	2	2	2	1	TFIIB	zinc-binding
zf-NADH-PPase	PF09297.6	gi|124027326|ref|YP_001012646.1|	-	0.0048	16.3	4.7	0.11	12.0	0.1	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|124027326|ref|YP_001012646.1|	-	0.0063	15.6	1.1	0.55	9.5	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
GFA	PF04828.9	gi|124027326|ref|YP_001012646.1|	-	0.0071	16.2	1.7	0.28	11.1	0.0	2.0	1	1	1	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
DUF1451	PF07295.6	gi|124027326|ref|YP_001012646.1|	-	0.0072	16.1	0.4	0.0072	16.1	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1451)
FdhE	PF04216.7	gi|124027326|ref|YP_001012646.1|	-	0.0077	15.9	0.7	2.9	7.5	0.6	2.0	1	1	1	2	2	2	2	Protein	involved	in	formate	dehydrogenase	formation
IBR	PF01485.16	gi|124027326|ref|YP_001012646.1|	-	0.011	15.6	0.3	0.011	15.5	0.2	1.1	1	0	0	1	1	1	0	IBR	domain
zf-piccolo	PF05715.8	gi|124027326|ref|YP_001012646.1|	-	0.014	15.3	0.3	0.015	15.2	0.2	1.1	1	0	0	1	1	1	0	Piccolo	Zn-finger
OrfB_Zn_ribbon	PF07282.6	gi|124027326|ref|YP_001012646.1|	-	0.016	14.8	0.5	0.018	14.6	0.3	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.5	gi|124027326|ref|YP_001012646.1|	-	0.017	14.5	1.2	2	7.9	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DZR	PF12773.2	gi|124027326|ref|YP_001012646.1|	-	0.018	14.8	1.3	0.031	14.0	0.9	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn_ribbon_recom	PF13408.1	gi|124027326|ref|YP_001012646.1|	-	0.031	14.5	3.9	0.032	14.5	1.7	1.8	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-ISL3	PF14690.1	gi|124027326|ref|YP_001012646.1|	-	0.039	13.9	5.8	1.5	8.8	0.1	2.5	1	1	2	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn_Tnp_IS1595	PF12760.2	gi|124027326|ref|YP_001012646.1|	-	0.045	13.5	6.6	0.084	12.7	4.6	1.5	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|124027326|ref|YP_001012646.1|	-	0.073	12.7	1.7	3.2	7.4	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF2082	PF09855.4	gi|124027326|ref|YP_001012646.1|	-	0.075	12.8	1.0	1.4	8.8	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Gmx_para_CXXCG	PF09535.5	gi|124027326|ref|YP_001012646.1|	-	0.09	11.7	0.1	0.096	11.6	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(Gmx_para_CXXCG)
zf-LITAF-like	PF10601.4	gi|124027326|ref|YP_001012646.1|	-	0.098	12.5	0.9	0.79	9.6	0.0	2.0	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027326|ref|YP_001012646.1|	-	0.1	12.1	3.7	2	8.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|124027326|ref|YP_001012646.1|	-	0.15	11.7	1.1	11	5.7	0.2	2.3	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Auto_anti-p27	PF06677.7	gi|124027326|ref|YP_001012646.1|	-	0.27	11.0	2.0	3.2	7.6	0.1	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Ribosomal_L37e	PF01907.14	gi|124027326|ref|YP_001012646.1|	-	0.4	10.5	3.6	0.65	9.8	2.5	1.4	1	1	0	1	1	1	0	Ribosomal	protein	L37e
DUF4379	PF14311.1	gi|124027326|ref|YP_001012646.1|	-	0.45	10.3	3.6	1.6	8.6	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
Nudix_N_2	PF14803.1	gi|124027326|ref|YP_001012646.1|	-	0.69	9.6	5.0	3.4	7.4	3.5	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
UPF0547	PF10571.4	gi|124027326|ref|YP_001012646.1|	-	0.7	9.6	0.1	0.7	9.6	0.1	2.4	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS91	PF14319.1	gi|124027326|ref|YP_001012646.1|	-	1.2	8.6	3.8	11	5.5	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
Zn-ribbon_8	PF09723.5	gi|124027326|ref|YP_001012646.1|	-	1.3	9.0	6.8	4.5	7.3	0.2	2.5	2	1	0	2	2	2	0	Zinc	ribbon	domain
zf-tcix	PF14952.1	gi|124027326|ref|YP_001012646.1|	-	1.5	8.2	4.7	1.5	8.2	0.5	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-CCHC	PF00098.18	gi|124027326|ref|YP_001012646.1|	-	7	6.7	9.1	27	4.9	0.1	2.3	2	0	0	2	2	2	0	Zinc	knuckle
Ribosomal_S24e	PF01282.14	gi|124027327|ref|YP_001012647.1|	-	5.1e-25	87.0	0.9	5.3e-25	87.0	0.1	1.4	2	0	0	2	2	2	1	Ribosomal	protein	S24e
DUF359	PF04019.7	gi|124027328|ref|YP_001012648.1|	-	1.1e-32	112.0	0.0	1.2e-32	111.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
BDM	PF10684.4	gi|124027328|ref|YP_001012648.1|	-	0.058	13.6	0.0	0.095	12.9	0.0	1.3	1	0	0	1	1	1	0	Putative	biofilm-dependent	modulation	protein
Spt4	PF06093.8	gi|124027329|ref|YP_001012649.1|	-	1.5e-15	56.8	0.1	1.8e-15	56.5	0.0	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
zf-C4H2	PF10146.4	gi|124027329|ref|YP_001012649.1|	-	0.0061	16.6	1.0	0.0074	16.3	0.7	1.1	1	0	0	1	1	1	1	Zinc	finger-containing	protein
DZR	PF12773.2	gi|124027329|ref|YP_001012649.1|	-	0.0063	16.3	0.5	0.0079	15.9	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|124027329|ref|YP_001012649.1|	-	0.023	14.1	0.3	0.035	13.6	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
NRDD	PF13597.1	gi|124027329|ref|YP_001012649.1|	-	0.052	11.6	0.1	0.058	11.4	0.1	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zf-P11	PF03854.9	gi|124027329|ref|YP_001012649.1|	-	0.054	12.9	0.4	0.074	12.5	0.3	1.2	1	0	0	1	1	1	0	P-11	zinc	finger
zf-ribbon_3	PF13248.1	gi|124027329|ref|YP_001012649.1|	-	0.12	11.6	1.5	0.16	11.2	1.0	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124027329|ref|YP_001012649.1|	-	0.16	11.2	1.1	0.28	10.5	0.0	1.9	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF35_N	PF12172.3	gi|124027329|ref|YP_001012649.1|	-	0.2	11.6	2.1	0.36	10.8	1.5	1.5	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
UPF0547	PF10571.4	gi|124027329|ref|YP_001012649.1|	-	0.52	10.0	3.5	0.81	9.4	2.4	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|124027329|ref|YP_001012649.1|	-	1.4	8.9	4.1	14	5.6	0.3	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
SHS2_Rpb7-N	PF03876.12	gi|124027330|ref|YP_001012650.1|	-	6.3e-20	71.0	0.1	1.2e-19	70.1	0.1	1.5	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.18	gi|124027330|ref|YP_001012650.1|	-	8.1e-08	32.2	1.8	1.8e-07	31.1	1.2	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
RNA_pol_Rbc25	PF08292.7	gi|124027330|ref|YP_001012650.1|	-	0.00054	20.1	0.0	0.0008	19.6	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	Rpc25
Fcf1	PF04900.7	gi|124027331|ref|YP_001012651.1|	-	4.9e-14	52.2	0.0	7.1e-14	51.7	0.0	1.2	1	0	0	1	1	1	1	Fcf1
PIN	PF01850.16	gi|124027331|ref|YP_001012651.1|	-	1.9e-05	24.9	0.1	4.6e-05	23.7	0.0	1.6	1	1	0	1	1	1	1	PIN	domain
PIN_4	PF13638.1	gi|124027331|ref|YP_001012651.1|	-	0.0088	16.1	0.0	0.024	14.7	0.0	1.8	1	1	0	1	1	1	1	PIN	domain
DUF4037	PF13228.1	gi|124027331|ref|YP_001012651.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4037)
GTP_EFTU	PF00009.22	gi|124027332|ref|YP_001012652.1|	-	1.5e-39	135.3	0.0	2.4e-39	134.7	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|124027332|ref|YP_001012652.1|	-	1.3e-28	98.8	0.1	3e-28	97.7	0.1	1.5	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|124027332|ref|YP_001012652.1|	-	2.5e-08	33.9	3.1	1.7e-07	31.2	1.7	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|124027332|ref|YP_001012652.1|	-	0.015	15.2	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.4	gi|124027332|ref|YP_001012652.1|	-	0.054	12.9	1.7	3.1	7.2	0.1	2.6	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
Ribosomal_S6e	PF01092.14	gi|124027333|ref|YP_001012653.1|	-	1.5e-27	95.7	0.0	3.1e-27	94.7	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S6e
GreA_GreB	PF01272.14	gi|124027333|ref|YP_001012653.1|	-	0.0031	17.1	0.3	0.013	15.1	0.0	2.1	3	0	0	3	3	3	1	Transcription	elongation	factor,	GreA/GreB,	C-term
Rieske_2	PF13806.1	gi|124027333|ref|YP_001012653.1|	-	0.054	13.2	0.0	2.6	7.7	0.0	2.3	2	0	0	2	2	2	0	Rieske-like	[2Fe-2S]	domain
V-set_CD47	PF08204.6	gi|124027333|ref|YP_001012653.1|	-	0.08	12.7	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	CD47	immunoglobulin-like	domain
GTP_EFTU	PF00009.22	gi|124027334|ref|YP_001012654.1|	-	7.2e-34	116.8	0.1	2.5e-32	111.8	0.0	2.7	2	1	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.1	gi|124027334|ref|YP_001012654.1|	-	1e-25	89.1	1.0	3.8e-25	87.3	0.7	2.1	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.3	gi|124027334|ref|YP_001012654.1|	-	2.4e-25	88.5	0.5	4.8e-25	87.5	0.3	1.5	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.20	gi|124027334|ref|YP_001012654.1|	-	1.7e-11	44.0	6.7	1.4e-10	41.1	0.3	2.8	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|124027334|ref|YP_001012654.1|	-	5.1e-05	23.2	0.0	0.00013	21.8	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|124027334|ref|YP_001012654.1|	-	0.00055	20.4	0.0	0.0015	19.0	0.0	1.8	1	0	0	1	1	1	1	Miro-like	protein
SGIII	PF15467.1	gi|124027334|ref|YP_001012654.1|	-	0.00092	18.3	0.0	0.29	10.1	0.0	2.1	2	0	0	2	2	2	2	Secretogranin-3
Dynamin_N	PF00350.18	gi|124027334|ref|YP_001012654.1|	-	0.001	18.9	0.1	0.057	13.2	0.0	3.2	3	0	0	3	3	3	1	Dynamin	family
ATP_bind_1	PF03029.12	gi|124027334|ref|YP_001012654.1|	-	0.012	15.1	0.0	0.048	13.1	0.0	2.0	1	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Ras	PF00071.17	gi|124027334|ref|YP_001012654.1|	-	0.059	12.7	0.0	0.46	9.8	0.0	2.3	1	1	0	1	1	1	0	Ras	family
Arf	PF00025.16	gi|124027334|ref|YP_001012654.1|	-	0.085	12.0	0.1	9.7	5.3	0.0	3.1	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
PduV-EutP	PF10662.4	gi|124027334|ref|YP_001012654.1|	-	0.1	12.0	0.0	0.68	9.4	0.0	2.3	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
NusG	PF02357.14	gi|124027334|ref|YP_001012654.1|	-	0.14	12.4	0.6	1.9	8.7	0.1	2.8	3	0	0	3	3	2	0	Transcription	termination	factor	nusG
DUF4290	PF14123.1	gi|124027334|ref|YP_001012654.1|	-	0.15	11.2	0.2	0.42	9.8	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4290)
DUF1886	PF09171.5	gi|124027336|ref|YP_001012656.1|	-	3.5e-78	262.0	0.0	4.3e-78	261.7	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1886)
DHH	PF01368.15	gi|124027337|ref|YP_001012657.1|	-	7.4e-06	25.6	0.1	1.1e-05	25.1	0.0	1.3	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|124027337|ref|YP_001012657.1|	-	3.7e-05	23.3	0.9	7.4e-05	22.3	0.4	1.7	1	1	0	1	1	1	1	DHHA1	domain
DUF429	PF04250.8	gi|124027338|ref|YP_001012658.1|	-	2.7e-33	114.9	1.2	3.1e-33	114.8	0.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
Fer4_13	PF13370.1	gi|124027339|ref|YP_001012659.1|	-	5.6e-22	77.8	3.7	8.1e-22	77.3	2.6	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|124027339|ref|YP_001012659.1|	-	2.6e-19	69.5	4.4	3e-19	69.3	3.1	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4	PF00037.22	gi|124027339|ref|YP_001012659.1|	-	0.00037	19.9	3.7	0.0022	17.5	0.8	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124027339|ref|YP_001012659.1|	-	0.0028	17.4	2.9	0.0081	15.9	2.2	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124027339|ref|YP_001012659.1|	-	0.0045	17.2	1.0	0.0071	16.5	0.7	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027339|ref|YP_001012659.1|	-	0.0071	16.1	1.2	0.0071	16.1	0.8	2.5	3	0	0	3	3	3	1	4Fe-4S	binding	domain
XkdW	PF09636.5	gi|124027339|ref|YP_001012659.1|	-	0.031	14.1	0.0	0.037	13.9	0.0	1.1	1	0	0	1	1	1	0	XkdW	protein
Fer4_19	PF06902.6	gi|124027339|ref|YP_001012659.1|	-	0.038	13.8	4.8	0.16	11.8	3.4	2.0	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_7	PF12838.2	gi|124027339|ref|YP_001012659.1|	-	0.067	13.5	3.5	0.45	10.9	0.3	2.2	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124027339|ref|YP_001012659.1|	-	0.1	12.5	0.6	0.1	12.5	0.4	2.2	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124027339|ref|YP_001012659.1|	-	0.15	11.9	5.3	1.4	8.8	3.8	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124027339|ref|YP_001012659.1|	-	0.27	11.2	1.5	0.53	10.3	1.0	1.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124027339|ref|YP_001012659.1|	-	0.38	11.2	0.2	0.38	11.2	0.1	2.1	2	1	0	2	2	2	0	4Fe-4S	binding	domain
ERCC4	PF02732.10	gi|124027340|ref|YP_001012660.1|	-	1e-21	77.2	0.0	1.5e-21	76.6	0.0	1.3	1	0	0	1	1	1	1	ERCC4	domain
HHH_2	PF12826.2	gi|124027340|ref|YP_001012660.1|	-	1.3e-12	47.4	0.0	2.2e-12	46.6	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|124027340|ref|YP_001012660.1|	-	2.6e-09	37.1	0.1	1.5e-08	34.6	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|124027340|ref|YP_001012660.1|	-	1e-07	31.2	0.0	1.7e-06	27.3	0.0	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|124027340|ref|YP_001012660.1|	-	0.036	13.9	0.0	0.21	11.5	0.0	2.2	2	1	1	3	3	3	0	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|124027340|ref|YP_001012660.1|	-	0.15	12.3	0.0	6.8	6.9	0.0	2.3	1	1	1	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
Lysine_decarbox	PF03641.9	gi|124027341|ref|YP_001012661.1|	-	4.3e-05	23.3	0.1	6.1e-05	22.8	0.1	1.2	1	0	0	1	1	1	1	Possible	lysine	decarboxylase
Peptidase_M24	PF00557.19	gi|124027342|ref|YP_001012662.1|	-	1.4e-67	227.3	0.8	1.7e-67	226.9	0.5	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|124027342|ref|YP_001012662.1|	-	6.5e-08	33.1	0.0	1.7e-07	31.7	0.0	1.8	1	1	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
DUF763	PF05559.6	gi|124027343|ref|YP_001012663.1|	-	4.8e-127	423.3	0.0	5.6e-127	423.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
HHH	PF00633.18	gi|124027343|ref|YP_001012663.1|	-	0.0068	16.0	0.5	0.025	14.2	0.0	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
Ribosomal_S8e	PF01201.17	gi|124027344|ref|YP_001012664.1|	-	1.4e-39	135.2	1.2	1.5e-39	135.1	0.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
NTPase_I-T	PF01931.13	gi|124027345|ref|YP_001012665.1|	-	4.1e-42	143.7	0.0	4.7e-42	143.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
Nol1_Nop2_Fmu	PF01189.12	gi|124027346|ref|YP_001012666.1|	-	3.9e-47	160.9	0.0	5.2e-47	160.5	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_18	PF12847.2	gi|124027346|ref|YP_001012666.1|	-	3.3e-05	24.4	0.0	7.8e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124027346|ref|YP_001012666.1|	-	0.0001	22.3	0.1	0.00022	21.2	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|124027346|ref|YP_001012666.1|	-	0.0018	18.2	0.0	0.006	16.5	0.0	1.8	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.1	gi|124027346|ref|YP_001012666.1|	-	0.024	14.2	0.0	0.068	12.7	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
IF2_N	PF04760.10	gi|124027346|ref|YP_001012666.1|	-	0.1	12.2	0.0	0.85	9.3	0.0	2.4	2	1	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
ApbA	PF02558.11	gi|124027347|ref|YP_001012667.1|	-	6e-08	32.2	0.0	7.1e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DAO	PF01266.19	gi|124027347|ref|YP_001012667.1|	-	0.0043	16.0	0.4	0.0048	15.8	0.3	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
F420_oxidored	PF03807.12	gi|124027347|ref|YP_001012667.1|	-	0.0057	17.0	0.1	0.0094	16.3	0.1	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.13	gi|124027347|ref|YP_001012667.1|	-	0.0071	16.3	0.0	0.068	13.1	0.0	2.1	2	0	0	2	2	2	1	TrkA-N	domain
ThiF	PF00899.16	gi|124027347|ref|YP_001012667.1|	-	0.0095	15.7	0.3	0.016	14.9	0.2	1.4	1	0	0	1	1	1	1	ThiF	family
UDPG_MGDP_dh_N	PF03721.9	gi|124027347|ref|YP_001012667.1|	-	0.016	14.5	0.1	0.023	14.0	0.1	1.2	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
IlvN	PF07991.7	gi|124027347|ref|YP_001012667.1|	-	0.017	14.4	0.1	0.032	13.6	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|124027347|ref|YP_001012667.1|	-	0.018	14.8	0.0	0.028	14.2	0.0	1.3	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_2	PF07992.9	gi|124027347|ref|YP_001012667.1|	-	0.074	12.9	0.2	0.099	12.5	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|124027347|ref|YP_001012667.1|	-	0.078	12.7	0.0	0.1	12.3	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Gar1	PF04410.9	gi|124027348|ref|YP_001012668.1|	-	8.6e-12	44.7	0.0	9.8e-12	44.5	0.0	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
TFIIB	PF00382.14	gi|124027349|ref|YP_001012669.1|	-	4.4e-20	71.2	2.2	2.2e-11	43.4	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|124027349|ref|YP_001012669.1|	-	3.3e-10	39.1	0.3	5.8e-10	38.3	0.2	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|124027349|ref|YP_001012669.1|	-	3.1e-06	26.3	0.3	0.012	14.8	0.1	2.7	2	0	0	2	2	2	2	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|124027349|ref|YP_001012669.1|	-	9.4e-06	25.0	0.3	0.043	13.3	0.0	3.1	3	0	0	3	3	3	2	AsnC-type	helix-turn-helix	domain
Cyclin_C	PF02984.14	gi|124027349|ref|YP_001012669.1|	-	4.1e-05	23.4	0.0	0.038	13.9	0.0	2.2	1	1	1	2	2	2	2	Cyclin,	C-terminal	domain
DZR	PF12773.2	gi|124027349|ref|YP_001012669.1|	-	0.00027	20.6	0.0	0.00044	20.0	0.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
HTH_37	PF13744.1	gi|124027349|ref|YP_001012669.1|	-	0.00051	19.7	0.2	0.53	10.1	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|124027349|ref|YP_001012669.1|	-	0.0009	18.8	1.3	0.17	11.5	0.1	2.8	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|124027349|ref|YP_001012669.1|	-	0.00096	18.2	1.5	0.24	10.5	0.1	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Cyclin_N	PF00134.18	gi|124027349|ref|YP_001012669.1|	-	0.0012	18.4	1.0	0.058	12.9	0.3	2.2	1	1	1	2	2	2	1	Cyclin,	N-terminal	domain
HTH_24	PF13412.1	gi|124027349|ref|YP_001012669.1|	-	0.0013	18.0	3.2	0.088	12.2	0.0	3.4	4	0	0	4	4	3	1	Winged	helix-turn-helix	DNA-binding
HTH_10	PF04967.7	gi|124027349|ref|YP_001012669.1|	-	0.0024	17.3	0.0	0.09	12.3	0.0	2.5	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_3	PF01381.17	gi|124027349|ref|YP_001012669.1|	-	0.0028	17.4	0.3	3.7	7.4	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix
Sigma70_r4_2	PF08281.7	gi|124027349|ref|YP_001012669.1|	-	0.0068	15.8	0.6	3.6	7.1	0.1	2.6	2	0	0	2	2	2	1	Sigma-70,	region	4
zf-ribbon_3	PF13248.1	gi|124027349|ref|YP_001012669.1|	-	0.0096	15.1	1.0	2.4	7.4	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|124027349|ref|YP_001012669.1|	-	0.011	15.3	0.2	0.021	14.4	0.1	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HTH_8	PF02954.14	gi|124027349|ref|YP_001012669.1|	-	0.013	15.0	0.3	6	6.5	0.1	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
zinc_ribbon_2	PF13240.1	gi|124027349|ref|YP_001012669.1|	-	0.015	14.7	0.2	0.033	13.6	0.2	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
Trp_repressor	PF01371.14	gi|124027349|ref|YP_001012669.1|	-	0.02	14.8	0.7	2.5	8.0	0.0	3.4	2	1	1	3	3	3	0	Trp	repressor	protein
HTH_31	PF13560.1	gi|124027349|ref|YP_001012669.1|	-	0.026	14.7	0.6	5.5	7.2	0.1	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|124027349|ref|YP_001012669.1|	-	0.03	13.9	0.3	11	5.7	0.0	2.8	2	0	0	2	2	2	0	HTH	domain
HTH_Crp_2	PF13545.1	gi|124027349|ref|YP_001012669.1|	-	0.039	13.7	0.2	8.9	6.1	0.0	3.3	3	1	1	4	4	3	0	Crp-like	helix-turn-helix	domain
Rubredoxin	PF00301.15	gi|124027349|ref|YP_001012669.1|	-	0.041	13.7	2.1	0.64	9.9	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin
TrmB	PF01978.14	gi|124027349|ref|YP_001012669.1|	-	0.042	13.5	2.4	1	9.1	0.0	3.4	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.2	gi|124027349|ref|YP_001012669.1|	-	0.047	13.9	0.6	0.19	11.9	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|124027349|ref|YP_001012669.1|	-	0.049	13.6	1.0	6.9	6.7	0.1	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_30	PF13556.1	gi|124027349|ref|YP_001012669.1|	-	0.056	13.0	0.1	0.26	10.8	0.0	2.1	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
SpoIIID	PF12116.3	gi|124027349|ref|YP_001012669.1|	-	0.066	13.1	0.7	1.4	8.8	0.0	2.4	2	0	0	2	2	2	0	Stage	III	sporulation	protein	D
zf-NADH-PPase	PF09297.6	gi|124027349|ref|YP_001012669.1|	-	0.069	12.6	0.8	0.21	11.1	0.6	1.8	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
HTH_38	PF13936.1	gi|124027349|ref|YP_001012669.1|	-	0.083	12.4	0.4	3.8	7.1	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain
TetR_N	PF00440.18	gi|124027349|ref|YP_001012669.1|	-	0.089	12.4	0.2	3.2	7.4	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
MarR_2	PF12802.2	gi|124027349|ref|YP_001012669.1|	-	0.11	12.2	0.3	1.9	8.2	0.0	2.9	3	1	0	3	3	3	0	MarR	family
zf-TFIIB	PF13453.1	gi|124027349|ref|YP_001012669.1|	-	0.12	11.6	0.7	0.24	10.6	0.5	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
DUF4428	PF14471.1	gi|124027349|ref|YP_001012669.1|	-	0.14	11.9	1.1	0.38	10.5	0.8	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
Lar_restr_allev	PF14354.1	gi|124027349|ref|YP_001012669.1|	-	0.15	12.3	0.2	0.32	11.3	0.1	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
RRN7	PF11781.3	gi|124027349|ref|YP_001012669.1|	-	0.15	11.5	0.1	0.27	10.7	0.1	1.3	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Nudix_N_2	PF14803.1	gi|124027349|ref|YP_001012669.1|	-	0.31	10.7	1.8	1.1	8.9	1.3	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
RNA_pol_Rpc34	PF05158.7	gi|124027350|ref|YP_001012670.1|	-	4.7e-08	32.5	0.1	0.00029	20.1	0.0	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
B-block_TFIIIC	PF04182.7	gi|124027350|ref|YP_001012670.1|	-	4.4e-07	29.6	0.1	6.7e-07	29.0	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.17	gi|124027350|ref|YP_001012670.1|	-	3e-05	23.6	0.0	4.8e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|124027350|ref|YP_001012670.1|	-	5.2e-05	22.8	0.8	7.5e-05	22.3	0.6	1.2	1	0	0	1	1	1	1	MarR	family
TRM	PF02005.11	gi|124027351|ref|YP_001012671.1|	-	1.4e-98	330.2	0.0	1.6e-98	330.1	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_26	PF13659.1	gi|124027351|ref|YP_001012671.1|	-	1.5e-08	34.6	0.2	5.9e-08	32.7	0.1	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|124027351|ref|YP_001012671.1|	-	2.5e-07	30.5	0.0	4.5e-07	29.6	0.0	1.4	1	0	0	1	1	1	1	Met-10+	like-protein
PrmA	PF06325.8	gi|124027351|ref|YP_001012671.1|	-	0.00019	20.6	0.0	0.00032	19.9	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.2	gi|124027351|ref|YP_001012671.1|	-	0.0006	20.3	0.0	0.0017	18.9	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124027351|ref|YP_001012671.1|	-	0.00067	19.2	0.0	0.0013	18.3	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|124027351|ref|YP_001012671.1|	-	0.0041	16.4	0.1	0.017	14.4	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|124027351|ref|YP_001012671.1|	-	0.0093	15.5	0.0	0.015	14.8	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_24	PF13578.1	gi|124027351|ref|YP_001012671.1|	-	0.045	14.5	0.0	0.11	13.3	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
zf-C3HC4_2	PF13923.1	gi|124027351|ref|YP_001012671.1|	-	0.12	12.3	0.6	0.24	11.4	0.4	1.4	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-RING_3	PF14369.1	gi|124027351|ref|YP_001012671.1|	-	2.3	8.2	6.9	4	7.5	1.2	2.4	2	0	0	2	2	2	0	zinc-finger
Oxidored_molyb	PF00174.14	gi|124027352|ref|YP_001012672.1|	-	1.5e-22	79.7	0.2	2.5e-22	79.0	0.1	1.3	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Glycos_transf_2	PF00535.21	gi|124027353|ref|YP_001012673.1|	-	2e-16	60.1	0.0	2.7e-16	59.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|124027353|ref|YP_001012673.1|	-	5.4e-10	38.8	0.0	1.1e-09	37.8	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|124027353|ref|YP_001012673.1|	-	1.2e-07	31.1	0.0	1.4e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.1	gi|124027353|ref|YP_001012673.1|	-	1.7e-07	31.3	1.1	5.5e-07	29.6	0.7	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|124027353|ref|YP_001012673.1|	-	0.0014	18.8	0.1	0.0039	17.4	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
VacA	PF02691.10	gi|124027353|ref|YP_001012673.1|	-	0.18	9.4	0.0	0.24	8.9	0.0	1.1	1	0	0	1	1	1	0	Vacuolating	cyotoxin
Ribosomal_L38e	PF01781.13	gi|124027354|ref|YP_001012674.1|	-	2.5e-07	30.3	1.1	3.3e-07	29.9	0.8	1.3	1	0	0	1	1	1	1	Ribosomal	L38e	protein	family
TOBE	PF03459.12	gi|124027356|ref|YP_001012676.1|	-	0.0093	16.0	0.3	0.22	11.6	0.0	2.4	2	1	0	2	2	2	1	TOBE	domain
PilZ	PF07238.9	gi|124027356|ref|YP_001012676.1|	-	0.065	13.2	0.1	4.8	7.2	0.0	2.7	1	1	2	3	3	3	0	PilZ	domain
Lsm_C	PF14894.1	gi|124027357|ref|YP_001012677.1|	-	6.9e-21	73.5	0.3	1.2e-20	72.7	0.2	1.4	1	0	0	1	1	1	1	Lsm	C-terminal
LSM	PF01423.17	gi|124027357|ref|YP_001012677.1|	-	4.6e-10	38.9	0.0	7.2e-10	38.2	0.0	1.4	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|124027357|ref|YP_001012677.1|	-	8.8e-08	31.9	0.0	1.4e-07	31.3	0.0	1.5	1	0	0	1	1	1	1	Ataxin	2	SM	domain
Gemin7	PF11095.3	gi|124027357|ref|YP_001012677.1|	-	0.023	14.4	0.0	0.055	13.1	0.0	1.6	1	0	0	1	1	1	0	Gem-associated	protein	7	(Gemin7)
TGT	PF01702.13	gi|124027358|ref|YP_001012678.1|	-	3.1e-55	187.0	0.0	4.3e-55	186.5	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
PAC2	PF09754.4	gi|124027359|ref|YP_001012679.1|	-	1.4e-36	126.4	0.0	1.7e-36	126.1	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
TGT_C2	PF14810.1	gi|124027360|ref|YP_001012680.1|	-	3.4e-23	81.2	0.0	6.1e-23	80.4	0.0	1.4	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.15	gi|124027360|ref|YP_001012680.1|	-	7.8e-07	28.7	0.0	1.4e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	PUA	domain
PUCC	PF03209.10	gi|124027361|ref|YP_001012681.1|	-	0.0035	16.1	2.9	0.0041	15.9	2.0	1.1	1	0	0	1	1	1	1	PUCC	protein
Fumarate_red_D	PF02313.12	gi|124027361|ref|YP_001012681.1|	-	0.027	14.3	0.2	0.037	13.9	0.1	1.2	1	0	0	1	1	1	0	Fumarate	reductase	subunit	D
TcdA_TcdB_pore	PF12920.2	gi|124027361|ref|YP_001012681.1|	-	0.033	12.1	0.2	0.046	11.6	0.1	1.1	1	0	0	1	1	1	0	TcdA/TcdB	pore	forming	domain
DUF3487	PF11990.3	gi|124027361|ref|YP_001012681.1|	-	0.071	12.5	5.0	0.075	12.4	0.5	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3487)
DUF4118	PF13493.1	gi|124027361|ref|YP_001012681.1|	-	0.54	10.4	0.1	0.54	10.4	0.1	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4118)
FUN14	PF04930.10	gi|124027361|ref|YP_001012681.1|	-	0.98	9.7	11.1	15	5.9	7.7	2.2	1	1	0	1	1	1	0	FUN14	family
Romo1	PF10247.4	gi|124027361|ref|YP_001012681.1|	-	1.3	9.2	8.2	0.27	11.4	0.3	2.6	1	1	2	3	3	3	0	Reactive	mitochondrial	oxygen	species	modulator	1
DUF4203	PF13886.1	gi|124027361|ref|YP_001012681.1|	-	2.2	7.6	12.4	0.068	12.6	2.8	1.9	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4203)
SPC12	PF06645.8	gi|124027361|ref|YP_001012681.1|	-	4.5	7.1	5.7	1.2	8.9	1.2	2.0	2	0	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
DUF1275	PF06912.6	gi|124027361|ref|YP_001012681.1|	-	8.1	5.5	11.7	5.8	6.0	4.3	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1275)
GNVR	PF13807.1	gi|124027361|ref|YP_001012681.1|	-	9.5	6.0	7.4	1.6	8.5	0.1	2.7	2	2	1	3	3	3	0	G-rich	domain	on	putative	tyrosine	kinase
Beta-Casp	PF10996.3	gi|124027362|ref|YP_001012682.1|	-	1.8e-27	95.7	0.0	3.1e-27	94.9	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.7	gi|124027362|ref|YP_001012682.1|	-	2.5e-15	55.9	0.0	5.6e-15	54.8	0.0	1.6	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B	PF00753.22	gi|124027362|ref|YP_001012682.1|	-	1.5e-14	54.0	1.2	3.9e-14	52.7	0.8	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|124027362|ref|YP_001012682.1|	-	5.6e-09	35.8	0.1	1.7e-08	34.2	0.0	1.7	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
UBA	PF00627.26	gi|124027363|ref|YP_001012683.1|	-	2.9e-06	26.9	0.7	6.1e-06	25.9	0.2	1.8	2	0	0	2	2	2	1	UBA/TS-N	domain
NAC	PF01849.13	gi|124027363|ref|YP_001012683.1|	-	7.6e-06	25.3	0.6	1.4e-05	24.5	0.3	1.5	1	1	0	1	1	1	1	NAC	domain
ATP-synt_DE_N	PF02823.11	gi|124027363|ref|YP_001012683.1|	-	0.019	14.7	0.8	0.026	14.2	0.6	1.2	1	0	0	1	1	1	0	ATP	synthase,	Delta/Epsilon	chain,	beta-sandwich	domain
DUF3606	PF12244.3	gi|124027363|ref|YP_001012683.1|	-	0.057	13.0	1.4	0.069	12.7	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3606)
CUE	PF02845.11	gi|124027363|ref|YP_001012683.1|	-	0.11	11.9	0.1	5.9	6.4	0.0	2.5	2	1	0	2	2	2	0	CUE	domain
UBA_4	PF14555.1	gi|124027363|ref|YP_001012683.1|	-	0.12	11.9	0.1	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	UBA-like	domain
HTH_31	PF13560.1	gi|124027364|ref|YP_001012684.1|	-	1.8e-07	31.2	0.1	5.2e-07	29.7	0.1	1.8	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|124027364|ref|YP_001012684.1|	-	9.6e-06	25.3	0.0	2.3e-05	24.1	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.2	gi|124027364|ref|YP_001012684.1|	-	8.8e-05	22.4	0.0	0.00021	21.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF1902	PF08972.6	gi|124027364|ref|YP_001012684.1|	-	0.029	13.9	0.1	0.063	12.8	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1902)
HTH_37	PF13744.1	gi|124027364|ref|YP_001012684.1|	-	0.04	13.7	0.0	0.084	12.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Translin	PF01997.11	gi|124027366|ref|YP_001012686.1|	-	1.4e-34	119.4	0.0	1.8e-34	119.1	0.0	1.1	1	0	0	1	1	1	1	Translin	family
TPR_2	PF07719.12	gi|124027366|ref|YP_001012686.1|	-	2.3e-05	23.9	0.4	0.11	12.4	0.1	2.7	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|124027366|ref|YP_001012686.1|	-	0.00018	22.0	1.0	0.92	10.2	0.6	2.7	2	0	0	2	2	2	2	Tetratricopeptide	repeat
PPR	PF01535.15	gi|124027366|ref|YP_001012686.1|	-	0.0041	17.0	5.6	0.56	10.2	0.6	3.1	3	0	0	3	3	2	2	PPR	repeat
PPR_1	PF12854.2	gi|124027366|ref|YP_001012686.1|	-	0.0055	16.1	4.9	0.17	11.4	0.2	3.0	3	0	0	3	3	3	2	PPR	repeat
TPR_14	PF13428.1	gi|124027366|ref|YP_001012686.1|	-	0.0086	16.6	3.6	1.9	9.3	0.5	3.0	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|124027366|ref|YP_001012686.1|	-	0.011	15.6	1.4	1.8	8.5	0.2	2.8	2	1	0	2	2	2	0	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|124027366|ref|YP_001012686.1|	-	0.016	15.5	0.2	1.6	9.1	0.1	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
PPR_3	PF13812.1	gi|124027366|ref|YP_001012686.1|	-	0.019	15.1	1.7	6.5	7.3	0.0	3.0	3	0	0	3	3	2	0	Pentatricopeptide	repeat	domain
TPR_1	PF00515.23	gi|124027366|ref|YP_001012686.1|	-	0.031	13.8	0.4	2.5	7.8	0.0	3.1	3	0	0	3	3	3	0	Tetratricopeptide	repeat
PPR_2	PF13041.1	gi|124027366|ref|YP_001012686.1|	-	0.12	12.4	1.5	18	5.4	0.0	2.8	2	0	0	2	2	2	0	PPR	repeat	family
TPR_10	PF13374.1	gi|124027366|ref|YP_001012686.1|	-	0.12	12.3	3.4	1	9.3	0.3	2.9	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TPR_4	PF07721.9	gi|124027366|ref|YP_001012686.1|	-	0.26	11.8	1.3	17	6.1	0.0	2.7	2	0	0	2	2	2	0	Tetratricopeptide	repeat
AAA_18	PF13238.1	gi|124027367|ref|YP_001012687.1|	-	9.6e-17	61.4	0.0	1.4e-16	60.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027367|ref|YP_001012687.1|	-	8.9e-07	29.7	0.0	1.1e-06	29.4	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|124027367|ref|YP_001012687.1|	-	0.0028	17.6	0.3	0.01	15.8	0.0	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027367|ref|YP_001012687.1|	-	0.0033	17.5	0.0	0.031	14.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|124027367|ref|YP_001012687.1|	-	0.0041	16.9	0.1	0.047	13.5	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|124027367|ref|YP_001012687.1|	-	0.0053	16.6	0.0	0.096	12.5	0.0	2.1	2	0	0	2	2	2	1	Shikimate	kinase
KaiC	PF06745.8	gi|124027367|ref|YP_001012687.1|	-	0.0066	15.5	0.0	2.9	6.9	0.0	2.1	2	0	0	2	2	2	2	KaiC
DUF2075	PF09848.4	gi|124027367|ref|YP_001012687.1|	-	0.0067	15.4	0.0	0.0088	15.0	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|124027367|ref|YP_001012687.1|	-	0.012	15.3	0.0	0.021	14.5	0.0	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA	PF00004.24	gi|124027367|ref|YP_001012687.1|	-	0.053	13.7	0.0	0.14	12.3	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|124027367|ref|YP_001012687.1|	-	0.066	12.2	0.1	0.12	11.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Mg_chelatase	PF01078.16	gi|124027367|ref|YP_001012687.1|	-	0.076	12.1	0.2	0.11	11.6	0.1	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.1	gi|124027367|ref|YP_001012687.1|	-	0.098	12.6	0.1	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|124027367|ref|YP_001012687.1|	-	0.1	12.3	0.1	0.33	10.6	0.1	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Cpn60_TCP1	PF00118.19	gi|124027368|ref|YP_001012688.1|	-	4e-166	553.3	9.0	4.7e-166	553.1	6.2	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Dak2	PF02734.12	gi|124027368|ref|YP_001012688.1|	-	0.022	14.4	1.1	0.27	10.9	0.1	2.7	2	0	0	2	2	2	0	DAK2	domain
BRCT	PF00533.21	gi|124027368|ref|YP_001012688.1|	-	0.12	12.5	0.0	33	4.7	0.0	2.7	2	0	0	2	2	2	0	BRCA1	C	Terminus	(BRCT)	domain
HK97-gp10_like	PF04883.7	gi|124027368|ref|YP_001012688.1|	-	6	7.8	15.0	4	8.4	0.1	5.4	4	2	1	5	5	5	0	Bacteriophage	HK97-gp10,	putative	tail-component
Ribosomal_S17e	PF00833.13	gi|124027369|ref|YP_001012689.1|	-	2.4e-26	91.8	0.3	2.8e-26	91.6	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	S17
Pribosyltran	PF00156.22	gi|124027370|ref|YP_001012690.1|	-	3.5e-23	81.6	0.1	5.5e-23	81.0	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|124027370|ref|YP_001012690.1|	-	0.0014	17.8	0.0	0.0018	17.5	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
DUF433	PF04255.9	gi|124027370|ref|YP_001012690.1|	-	0.012	15.0	0.4	1.8	8.0	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF433)
HTH_Tnp_ISL3	PF13542.1	gi|124027370|ref|YP_001012690.1|	-	0.066	12.4	0.0	0.15	11.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
CGI-121	PF08617.5	gi|124027371|ref|YP_001012691.1|	-	3.1e-08	33.4	0.0	4.2e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
ABC_tran	PF00005.22	gi|124027372|ref|YP_001012692.1|	-	2.6e-42	144.3	0.0	1e-20	74.4	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|124027372|ref|YP_001012692.1|	-	1.3e-17	64.7	3.6	0.00028	20.9	0.0	4.2	2	2	1	4	4	4	4	AAA	domain
SMC_N	PF02463.14	gi|124027372|ref|YP_001012692.1|	-	3.9e-16	58.9	0.5	8.8e-05	21.8	0.0	4.1	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
RLI	PF04068.10	gi|124027372|ref|YP_001012692.1|	-	9.8e-11	41.0	1.0	9.8e-11	41.0	0.7	1.8	2	0	0	2	2	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_17	PF13207.1	gi|124027372|ref|YP_001012692.1|	-	4.3e-08	34.0	1.5	0.0015	19.3	0.1	2.9	2	1	0	2	2	2	2	AAA	domain
Fer4	PF00037.22	gi|124027372|ref|YP_001012692.1|	-	1.9e-07	30.3	4.8	1.9e-07	30.3	3.3	3.0	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124027372|ref|YP_001012692.1|	-	2.9e-07	30.2	7.1	4.4e-07	29.6	4.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027372|ref|YP_001012692.1|	-	4.6e-07	29.4	12.0	9e-05	22.1	2.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA	PF00004.24	gi|124027372|ref|YP_001012692.1|	-	5.5e-06	26.6	0.1	0.031	14.4	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.1	gi|124027372|ref|YP_001012692.1|	-	1.3e-05	25.0	0.1	0.12	12.3	0.0	3.3	2	2	0	2	2	2	2	Putative	exonuclease	SbcCD,	C	subunit
Fer4_7	PF12838.2	gi|124027372|ref|YP_001012692.1|	-	1.4e-05	25.3	8.2	3.2e-05	24.2	5.7	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_22	PF13401.1	gi|124027372|ref|YP_001012692.1|	-	1.8e-05	24.8	2.1	0.12	12.5	0.0	3.5	2	2	0	2	2	2	2	AAA	domain
DUF258	PF03193.11	gi|124027372|ref|YP_001012692.1|	-	1.8e-05	23.9	0.5	0.049	12.8	0.0	2.9	3	0	0	3	3	3	2	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|124027372|ref|YP_001012692.1|	-	3.7e-05	23.4	0.5	0.078	12.6	0.1	3.0	3	0	0	3	3	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Fer4_2	PF12797.2	gi|124027372|ref|YP_001012692.1|	-	6.1e-05	22.6	13.6	0.0001	22.0	2.6	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
AAA_29	PF13555.1	gi|124027372|ref|YP_001012692.1|	-	9.4e-05	21.8	0.2	0.1	12.1	0.1	2.5	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|124027372|ref|YP_001012692.1|	-	0.00011	22.1	0.1	0.17	11.7	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
Fer4_10	PF13237.1	gi|124027372|ref|YP_001012692.1|	-	0.00012	21.8	20.0	0.00067	19.4	6.8	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Rad17	PF03215.10	gi|124027372|ref|YP_001012692.1|	-	0.00018	20.3	0.0	0.25	10.0	0.0	2.2	2	0	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
Miro	PF08477.8	gi|124027372|ref|YP_001012692.1|	-	0.00019	21.8	0.4	0.28	11.7	0.0	3.0	3	0	0	3	3	2	1	Miro-like	protein
AAA_18	PF13238.1	gi|124027372|ref|YP_001012692.1|	-	0.00026	21.2	0.2	0.29	11.4	0.0	3.2	3	0	0	3	3	2	1	AAA	domain
AAA_23	PF13476.1	gi|124027372|ref|YP_001012692.1|	-	0.00033	21.0	0.1	0.75	10.0	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|124027372|ref|YP_001012692.1|	-	0.00051	19.1	0.0	5.2	5.9	0.0	3.6	4	0	0	4	4	4	0	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|124027372|ref|YP_001012692.1|	-	0.0008	19.3	0.7	0.21	11.5	0.0	3.0	2	2	0	2	2	2	1	50S	ribosome-binding	GTPase
NACHT	PF05729.7	gi|124027372|ref|YP_001012692.1|	-	0.00081	19.0	0.7	0.11	12.1	0.0	2.4	2	0	0	2	2	2	1	NACHT	domain
Fer4_9	PF13187.1	gi|124027372|ref|YP_001012692.1|	-	0.00081	19.6	8.5	0.0019	18.4	5.9	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_16	PF13191.1	gi|124027372|ref|YP_001012692.1|	-	0.00096	19.1	4.5	0.16	11.9	0.3	3.0	2	2	0	2	2	2	2	AAA	ATPase	domain
UPF0079	PF02367.12	gi|124027372|ref|YP_001012692.1|	-	0.0011	18.5	0.2	0.0057	16.2	0.0	2.0	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_30	PF13604.1	gi|124027372|ref|YP_001012692.1|	-	0.0014	18.2	0.1	0.27	10.8	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|124027372|ref|YP_001012692.1|	-	0.0024	17.3	1.3	0.24	10.8	0.1	3.0	3	0	0	3	3	3	1	AAA	domain
RNA_helicase	PF00910.17	gi|124027372|ref|YP_001012692.1|	-	0.0036	17.4	0.1	1.3	9.1	0.0	2.4	2	0	0	2	2	2	1	RNA	helicase
NTPase_1	PF03266.10	gi|124027372|ref|YP_001012692.1|	-	0.012	15.3	0.5	1.5	8.4	0.1	2.6	2	0	0	2	2	2	0	NTPase
KAP_NTPase	PF07693.9	gi|124027372|ref|YP_001012692.1|	-	0.013	14.5	0.0	0.074	12.0	0.0	1.9	2	0	0	2	2	2	0	KAP	family	P-loop	domain
Fer4_16	PF13484.1	gi|124027372|ref|YP_001012692.1|	-	0.014	16.1	1.4	0.014	16.1	0.9	2.3	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
ArgK	PF03308.11	gi|124027372|ref|YP_001012692.1|	-	0.019	13.7	0.8	3.1	6.4	0.1	2.4	2	0	0	2	2	2	0	ArgK	protein
AAA_28	PF13521.1	gi|124027372|ref|YP_001012692.1|	-	0.02	14.8	1.4	8.4	6.3	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
AAA_14	PF13173.1	gi|124027372|ref|YP_001012692.1|	-	0.021	14.7	0.1	2.7	7.8	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
DUF87	PF01935.12	gi|124027372|ref|YP_001012692.1|	-	0.023	14.5	1.5	5.2	6.8	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
Fer4_18	PF13746.1	gi|124027372|ref|YP_001012692.1|	-	0.028	14.8	0.9	0.028	14.8	0.6	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
AAA_5	PF07728.9	gi|124027372|ref|YP_001012692.1|	-	0.031	14.0	1.9	10	5.8	0.1	3.6	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
Fer4_3	PF12798.2	gi|124027372|ref|YP_001012692.1|	-	0.037	14.5	4.9	0.037	14.5	3.4	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
VirE	PF05272.6	gi|124027372|ref|YP_001012692.1|	-	0.037	13.5	0.0	6.2	6.2	0.0	2.5	2	0	0	2	2	2	0	Virulence-associated	protein	E
FtsK_SpoIIIE	PF01580.13	gi|124027372|ref|YP_001012692.1|	-	0.046	13.1	0.3	12	5.3	0.0	2.5	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
Fer4_11	PF13247.1	gi|124027372|ref|YP_001012692.1|	-	0.054	13.3	2.4	0.096	12.5	1.6	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_19	PF13245.1	gi|124027372|ref|YP_001012692.1|	-	0.1	12.3	2.1	21	4.9	0.1	3.4	3	0	0	3	3	3	0	Part	of	AAA	domain
Fer4_8	PF13183.1	gi|124027372|ref|YP_001012692.1|	-	0.15	12.1	6.6	0.11	12.4	1.4	1.7	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
AAA_24	PF13479.1	gi|124027372|ref|YP_001012692.1|	-	0.19	11.3	0.4	7.3	6.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|124027372|ref|YP_001012692.1|	-	0.2	11.0	1.1	1.1	8.6	0.1	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_10	PF12846.2	gi|124027372|ref|YP_001012692.1|	-	0.22	10.9	0.7	22	4.3	0.0	2.8	3	0	0	3	3	3	0	AAA-like	domain
Fer4_4	PF12800.2	gi|124027372|ref|YP_001012692.1|	-	0.23	11.8	12.4	0.11	12.8	2.4	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
AAA_13	PF13166.1	gi|124027372|ref|YP_001012692.1|	-	0.26	9.7	0.2	8.4	4.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|124027372|ref|YP_001012692.1|	-	0.28	10.0	1.6	2.7	6.7	0.1	2.4	3	0	0	3	3	2	0	NB-ARC	domain
Fer4_17	PF13534.1	gi|124027372|ref|YP_001012692.1|	-	0.76	10.1	6.8	0.47	10.8	1.3	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
N36	PF11438.3	gi|124027373|ref|YP_001012693.1|	-	0.0073	15.7	0.7	1.3	8.5	0.0	2.9	3	0	0	3	3	3	2	36-mer	N-terminal	peptide	of	the	N	protein	(N36)
FBPase_3	PF01950.11	gi|124027374|ref|YP_001012694.1|	-	4.7e-195	647.6	0.0	5.5e-195	647.4	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
TPR_10	PF13374.1	gi|124027374|ref|YP_001012694.1|	-	0.14	12.1	0.2	0.42	10.6	0.0	1.9	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Aminotran_1_2	PF00155.16	gi|124027375|ref|YP_001012695.1|	-	1.3e-41	142.7	0.0	1.5e-41	142.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.8	gi|124027375|ref|YP_001012695.1|	-	0.0046	15.6	0.0	0.0062	15.2	0.0	1.3	1	0	0	1	1	1	1	Allinase
PBP	PF01161.15	gi|124027377|ref|YP_001012697.1|	-	4.1e-41	140.2	0.0	4.7e-41	140.0	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Pribosyltran	PF00156.22	gi|124027378|ref|YP_001012698.1|	-	1.4e-21	76.5	0.2	2.1e-21	75.9	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|124027378|ref|YP_001012698.1|	-	0.026	13.7	0.0	0.05	12.8	0.0	1.4	1	1	0	1	1	1	0	Uracil	phosphoribosyltransferase
Radical_SAM	PF04055.16	gi|124027379|ref|YP_001012699.1|	-	9e-19	68.2	0.0	4.6e-18	65.9	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124027379|ref|YP_001012699.1|	-	0.0013	18.8	0.0	0.0029	17.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
zf-ribbon_3	PF13248.1	gi|124027379|ref|YP_001012699.1|	-	0.0068	15.5	0.3	0.0068	15.5	0.2	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|124027379|ref|YP_001012699.1|	-	0.05	13.3	0.2	13	5.5	0.0	2.8	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
CBS	PF00571.23	gi|124027379|ref|YP_001012699.1|	-	0.084	12.6	0.1	37	4.2	0.0	3.4	4	0	0	4	4	4	0	CBS	domain
zf-C4_Topoisom	PF01396.14	gi|124027379|ref|YP_001012699.1|	-	0.093	12.2	9.6	0.65	9.5	0.1	3.0	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_5	PF13719.1	gi|124027379|ref|YP_001012699.1|	-	0.91	9.1	6.3	5.2	6.7	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124027379|ref|YP_001012699.1|	-	1.6	8.4	7.1	5.7	6.7	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
HTH_23	PF13384.1	gi|124027380|ref|YP_001012700.1|	-	2e-06	27.2	0.7	5.7e-06	25.8	0.1	2.0	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|124027380|ref|YP_001012700.1|	-	6.1e-06	25.6	2.2	9.5e-06	25.0	0.1	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|124027380|ref|YP_001012700.1|	-	5.4e-05	22.9	1.5	0.0031	17.2	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|124027380|ref|YP_001012700.1|	-	6.6e-05	22.5	0.0	0.00041	19.9	0.0	2.3	3	0	0	3	3	1	1	Bacterial	regulatory	protein,	arsR	family
CASP_C	PF08172.7	gi|124027380|ref|YP_001012700.1|	-	0.00019	20.5	5.5	0.00027	20.0	3.8	1.2	1	0	0	1	1	1	1	CASP	C	terminal
HTH_29	PF13551.1	gi|124027380|ref|YP_001012700.1|	-	0.00031	20.8	2.3	0.00063	19.8	1.6	1.6	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_11	PF08279.7	gi|124027380|ref|YP_001012700.1|	-	0.00081	18.9	1.8	0.0014	18.1	0.0	2.4	3	0	0	3	3	1	1	HTH	domain
DUF3584	PF12128.3	gi|124027380|ref|YP_001012700.1|	-	0.00086	16.7	9.2	0.0009	16.7	6.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
IncA	PF04156.9	gi|124027380|ref|YP_001012700.1|	-	0.001	18.7	14.7	0.0013	18.3	10.2	1.4	1	1	0	1	1	1	1	IncA	protein
GerE	PF00196.14	gi|124027380|ref|YP_001012700.1|	-	0.0013	18.0	0.1	0.0034	16.6	0.0	1.8	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	luxR	family
DUF972	PF06156.8	gi|124027380|ref|YP_001012700.1|	-	0.0016	18.7	6.8	0.0016	18.7	4.7	1.7	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF972)
HTH_40	PF14493.1	gi|124027380|ref|YP_001012700.1|	-	0.0024	18.0	4.2	0.014	15.6	2.9	2.3	1	1	0	1	1	1	1	Helix-turn-helix	domain
DUF342	PF03961.8	gi|124027380|ref|YP_001012700.1|	-	0.0026	16.2	4.8	0.003	16.0	3.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF342)
HTH_28	PF13518.1	gi|124027380|ref|YP_001012700.1|	-	0.0029	17.5	0.6	0.0067	16.4	0.0	1.9	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|124027380|ref|YP_001012700.1|	-	0.0031	17.0	0.0	0.0084	15.6	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|124027380|ref|YP_001012700.1|	-	0.0033	16.8	0.1	0.0033	16.8	0.0	2.8	3	0	0	3	3	2	1	Sigma-70,	region	4
KorB	PF08535.5	gi|124027380|ref|YP_001012700.1|	-	0.0034	17.5	1.1	0.031	14.4	0.7	2.5	1	1	0	1	1	1	1	KorB	domain
GrpE	PF01025.14	gi|124027380|ref|YP_001012700.1|	-	0.0044	16.5	9.4	0.0044	16.5	6.5	1.6	2	0	0	2	2	1	1	GrpE
APG6	PF04111.7	gi|124027380|ref|YP_001012700.1|	-	0.0053	15.8	7.9	0.006	15.6	5.5	1.2	1	0	0	1	1	1	1	Autophagy	protein	Apg6
HTH_24	PF13412.1	gi|124027380|ref|YP_001012700.1|	-	0.0064	15.8	4.1	0.02	14.2	0.0	2.9	3	0	0	3	3	2	1	Winged	helix-turn-helix	DNA-binding
BLOC1_2	PF10046.4	gi|124027380|ref|YP_001012700.1|	-	0.0072	16.4	5.0	0.015	15.3	3.5	1.5	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
V_ATPase_I	PF01496.14	gi|124027380|ref|YP_001012700.1|	-	0.0073	14.2	4.1	0.0078	14.1	2.8	1.1	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
Sigma70_r4	PF04545.11	gi|124027380|ref|YP_001012700.1|	-	0.0073	15.5	2.9	0.01	15.1	0.1	2.6	3	0	0	3	3	2	1	Sigma-70,	region	4
Terminase_5	PF06056.7	gi|124027380|ref|YP_001012700.1|	-	0.0074	15.8	0.0	0.016	14.7	0.0	1.6	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
Phage_GP20	PF06810.6	gi|124027380|ref|YP_001012700.1|	-	0.0079	15.6	8.3	0.015	14.7	5.7	1.4	1	0	0	1	1	1	1	Phage	minor	structural	protein	GP20
HTH_7	PF02796.10	gi|124027380|ref|YP_001012700.1|	-	0.0081	16.0	0.0	0.021	14.7	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
DUF1635	PF07795.6	gi|124027380|ref|YP_001012700.1|	-	0.0082	15.5	4.8	0.014	14.8	3.3	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1635)
WEMBL	PF05701.6	gi|124027380|ref|YP_001012700.1|	-	0.009	14.5	11.8	0.009	14.5	8.2	1.9	2	0	0	2	2	2	1	Weak	chloroplast	movement	under	blue	light
Leu_zip	PF15294.1	gi|124027380|ref|YP_001012700.1|	-	0.011	14.9	8.3	0.014	14.5	5.7	1.3	1	0	0	1	1	1	0	Leucine	zipper
AAA_13	PF13166.1	gi|124027380|ref|YP_001012700.1|	-	0.011	14.2	3.0	0.012	14.0	2.1	1.1	1	0	0	1	1	1	0	AAA	domain
DUF1465	PF07323.7	gi|124027380|ref|YP_001012700.1|	-	0.012	15.1	2.5	0.022	14.3	1.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1465)
GAS	PF13851.1	gi|124027380|ref|YP_001012700.1|	-	0.013	14.7	7.9	0.022	13.9	5.5	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Hemerythrin	PF01814.18	gi|124027380|ref|YP_001012700.1|	-	0.014	15.5	7.0	0.11	12.6	1.9	2.3	2	0	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
Prominin	PF05478.6	gi|124027380|ref|YP_001012700.1|	-	0.016	12.7	0.5	0.019	12.5	0.4	1.1	1	0	0	1	1	1	0	Prominin
ADIP	PF11559.3	gi|124027380|ref|YP_001012700.1|	-	0.017	14.9	9.7	0.038	13.9	6.7	1.5	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
MarR_2	PF12802.2	gi|124027380|ref|YP_001012700.1|	-	0.019	14.6	0.1	0.053	13.2	0.1	1.8	1	0	0	1	1	1	0	MarR	family
HTH_Tnp_1	PF01527.15	gi|124027380|ref|YP_001012700.1|	-	0.021	14.7	3.7	0.21	11.5	2.5	2.6	1	1	0	1	1	1	0	Transposase
Shugoshin_N	PF07558.6	gi|124027380|ref|YP_001012700.1|	-	0.022	14.4	2.0	0.05	13.3	1.4	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
EAP30	PF04157.11	gi|124027380|ref|YP_001012700.1|	-	0.024	13.8	5.9	0.29	10.2	0.0	2.3	2	0	0	2	2	2	0	EAP30/Vps36	family
Myb_DNA-bind_6	PF13921.1	gi|124027380|ref|YP_001012700.1|	-	0.026	14.6	1.1	0.21	11.7	0.0	2.6	2	1	0	2	2	1	0	Myb-like	DNA-binding	domain
DUF2316	PF10078.4	gi|124027380|ref|YP_001012700.1|	-	0.028	14.3	1.4	1.6	8.7	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
bZIP_1	PF00170.16	gi|124027380|ref|YP_001012700.1|	-	0.031	14.2	9.0	0.031	14.2	6.2	2.5	2	1	1	3	3	2	0	bZIP	transcription	factor
TBPIP	PF07106.8	gi|124027380|ref|YP_001012700.1|	-	0.036	13.6	8.5	0.038	13.5	4.9	1.7	2	0	0	2	2	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
HTH_8	PF02954.14	gi|124027380|ref|YP_001012700.1|	-	0.039	13.5	5.6	0.075	12.5	0.1	2.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
TrmB	PF01978.14	gi|124027380|ref|YP_001012700.1|	-	0.04	13.6	0.5	0.12	12.0	0.0	2.0	2	0	0	2	2	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4140	PF13600.1	gi|124027380|ref|YP_001012700.1|	-	0.042	14.3	4.5	0.042	14.3	3.1	3.3	3	1	1	4	4	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF3373	PF11853.3	gi|124027380|ref|YP_001012700.1|	-	0.043	12.3	1.4	0.056	11.9	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
HTH_19	PF12844.2	gi|124027380|ref|YP_001012700.1|	-	0.049	13.6	1.7	0.11	12.5	0.0	2.3	2	1	0	2	2	2	0	Helix-turn-helix	domain
Seryl_tRNA_N	PF02403.17	gi|124027380|ref|YP_001012700.1|	-	0.053	13.5	8.9	0.024	14.6	4.6	1.7	2	0	0	2	2	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Syntaxin_2	PF14523.1	gi|124027380|ref|YP_001012700.1|	-	0.054	13.5	1.9	0.11	12.4	1.3	1.5	1	0	0	1	1	1	0	Syntaxin-like	protein
CDC37_N	PF03234.9	gi|124027380|ref|YP_001012700.1|	-	0.057	13.7	1.4	0.074	13.3	1.0	1.3	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
Ax_dynein_light	PF10211.4	gi|124027380|ref|YP_001012700.1|	-	0.061	13.1	5.5	0.095	12.5	3.8	1.4	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
IL10	PF00726.12	gi|124027380|ref|YP_001012700.1|	-	0.066	12.5	1.1	0.1	11.8	0.7	1.3	1	0	0	1	1	1	0	Interleukin	10
HTH_17	PF12728.2	gi|124027380|ref|YP_001012700.1|	-	0.076	13.2	0.6	0.22	11.8	0.1	2.1	2	0	0	2	2	1	0	Helix-turn-helix	domain
YlqD	PF11068.3	gi|124027380|ref|YP_001012700.1|	-	0.081	12.9	7.9	0.092	12.7	4.4	1.8	2	0	0	2	2	1	0	YlqD	protein
Macoilin	PF09726.4	gi|124027380|ref|YP_001012700.1|	-	0.082	11.1	7.9	0.092	11.0	5.4	1.1	1	0	0	1	1	1	0	Transmembrane	protein
Vps53_N	PF04100.7	gi|124027380|ref|YP_001012700.1|	-	0.085	11.6	3.9	3.4	6.3	2.2	2.1	1	1	1	2	2	2	0	Vps53-like,	N-terminal
Spc7	PF08317.6	gi|124027380|ref|YP_001012700.1|	-	0.087	11.4	5.2	0.099	11.2	3.6	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
EMP24_GP25L	PF01105.19	gi|124027380|ref|YP_001012700.1|	-	0.097	12.3	2.3	0.16	11.6	1.5	1.4	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
EzrA	PF06160.7	gi|124027380|ref|YP_001012700.1|	-	0.1	10.7	11.4	0.058	11.5	6.6	1.5	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
Cep57_MT_bd	PF06657.8	gi|124027380|ref|YP_001012700.1|	-	0.1	12.5	5.4	0.21	11.5	3.7	1.5	1	0	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
Lumazine_bd	PF12870.2	gi|124027380|ref|YP_001012700.1|	-	0.1	12.6	1.1	0.6	10.1	0.2	2.3	1	1	2	3	3	3	0	Lumazine-binding	domain
NYD-SP28_assoc	PF14775.1	gi|124027380|ref|YP_001012700.1|	-	0.11	12.2	3.7	0.24	11.1	2.5	1.6	1	0	0	1	1	1	0	Sperm	tail	C-terminal	domain
Spectrin	PF00435.16	gi|124027380|ref|YP_001012700.1|	-	0.12	12.6	7.9	0.11	12.7	4.5	1.7	2	0	0	2	2	1	0	Spectrin	repeat
HTH_Tnp_Tc3_1	PF11427.3	gi|124027380|ref|YP_001012700.1|	-	0.12	12.0	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	Tc3	transposase
HTH_31	PF13560.1	gi|124027380|ref|YP_001012700.1|	-	0.12	12.5	0.2	0.12	12.5	0.1	2.3	2	0	0	2	2	1	0	Helix-turn-helix	domain
AAA_23	PF13476.1	gi|124027380|ref|YP_001012700.1|	-	0.12	12.6	5.8	0.15	12.3	4.0	1.2	1	0	0	1	1	1	0	AAA	domain
Sigma70_ECF	PF07638.6	gi|124027380|ref|YP_001012700.1|	-	0.13	11.9	4.7	1.2	8.7	0.1	2.3	1	1	1	2	2	2	0	ECF	sigma	factor
DUF948	PF06103.6	gi|124027380|ref|YP_001012700.1|	-	0.13	12.1	2.0	0.59	10.0	0.3	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Spc24	PF08286.6	gi|124027380|ref|YP_001012700.1|	-	0.13	11.9	6.8	0.25	11.0	4.7	1.5	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF2746	PF10874.3	gi|124027380|ref|YP_001012700.1|	-	0.15	12.2	3.3	3.3	7.9	0.2	2.6	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2746)
FlaC_arch	PF05377.6	gi|124027380|ref|YP_001012700.1|	-	0.16	11.9	4.2	0.28	11.1	1.6	2.3	2	1	1	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
FlxA	PF14282.1	gi|124027380|ref|YP_001012700.1|	-	0.19	11.7	4.4	0.41	10.6	3.0	1.6	1	0	0	1	1	1	0	FlxA-like	protein
Tropomyosin_1	PF12718.2	gi|124027380|ref|YP_001012700.1|	-	0.19	11.5	15.8	0.13	12.1	9.4	1.9	2	0	0	2	2	1	0	Tropomyosin	like
Herpes_BLRF2	PF05812.7	gi|124027380|ref|YP_001012700.1|	-	0.23	11.2	7.6	0.1	12.3	3.5	1.8	2	0	0	2	2	1	0	Herpesvirus	BLRF2	protein
YPEB	PF14620.1	gi|124027380|ref|YP_001012700.1|	-	0.26	10.2	3.9	0.28	10.1	2.0	1.5	2	0	0	2	2	1	0	YpeB	sporulation
3HCDH_N	PF02737.13	gi|124027380|ref|YP_001012700.1|	-	0.26	10.8	2.3	6.7	6.3	0.0	2.1	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ATG16	PF08614.6	gi|124027380|ref|YP_001012700.1|	-	0.28	10.9	10.5	0.35	10.6	7.3	1.4	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF16	PF01519.11	gi|124027380|ref|YP_001012700.1|	-	0.29	11.3	5.8	0.52	10.5	4.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
COG5	PF10392.4	gi|124027380|ref|YP_001012700.1|	-	0.3	11.0	2.6	0.44	10.5	1.3	1.6	2	0	0	2	2	1	0	Golgi	transport	complex	subunit	5
TMF_DNA_bd	PF12329.3	gi|124027380|ref|YP_001012700.1|	-	0.3	10.9	18.8	0.96	9.3	13.1	1.8	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
HTH_AsnC-type	PF13404.1	gi|124027380|ref|YP_001012700.1|	-	0.34	10.4	3.4	2.5	7.7	0.0	2.9	3	0	0	3	3	2	0	AsnC-type	helix-turn-helix	domain
Nup54	PF13874.1	gi|124027380|ref|YP_001012700.1|	-	0.38	10.4	6.6	0.82	9.3	2.7	2.1	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
Atg14	PF10186.4	gi|124027380|ref|YP_001012700.1|	-	0.41	9.5	9.8	0.64	8.9	6.8	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4164	PF13747.1	gi|124027380|ref|YP_001012700.1|	-	0.44	10.7	14.0	5	7.3	9.7	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
SlyX	PF04102.7	gi|124027380|ref|YP_001012700.1|	-	0.46	10.8	6.9	0.68	10.3	3.9	2.0	1	1	1	2	2	1	0	SlyX
SseC	PF04888.7	gi|124027380|ref|YP_001012700.1|	-	0.53	9.5	11.5	1.4	8.1	8.0	1.7	1	1	0	1	1	1	0	Secretion	system	effector	C	(SseC)	like	family
DUF1664	PF07889.7	gi|124027380|ref|YP_001012700.1|	-	0.61	9.8	4.5	2	8.2	0.4	2.6	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF1664)
TMF_TATA_bd	PF12325.3	gi|124027380|ref|YP_001012700.1|	-	0.64	9.7	11.9	0.57	9.9	6.9	1.9	2	1	0	2	2	1	0	TATA	element	modulatory	factor	1	TATA	binding
CCDC-167	PF15188.1	gi|124027380|ref|YP_001012700.1|	-	0.65	9.9	9.6	0.12	12.2	2.8	2.4	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
TSC22	PF01166.13	gi|124027380|ref|YP_001012700.1|	-	0.66	9.9	8.5	2.3	8.2	5.7	2.1	1	1	0	1	1	1	0	TSC-22/dip/bun	family
FemAB	PF02388.11	gi|124027380|ref|YP_001012700.1|	-	0.68	8.5	3.8	0.91	8.1	2.7	1.2	1	0	0	1	1	1	0	FemAB	family
Prefoldin_2	PF01920.15	gi|124027380|ref|YP_001012700.1|	-	0.73	9.6	15.4	0.35	10.6	4.7	2.7	2	1	1	3	3	2	0	Prefoldin	subunit
TMPIT	PF07851.8	gi|124027380|ref|YP_001012700.1|	-	0.77	8.7	3.4	1.2	8.1	2.3	1.3	1	0	0	1	1	1	0	TMPIT-like	protein
DUF724	PF05266.9	gi|124027380|ref|YP_001012700.1|	-	0.78	9.3	7.4	1.3	8.5	5.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Syntaxin	PF00804.20	gi|124027380|ref|YP_001012700.1|	-	0.84	9.8	7.8	0.67	10.1	4.2	1.6	2	0	0	2	2	1	0	Syntaxin
Herpes_UL6	PF01763.11	gi|124027380|ref|YP_001012700.1|	-	0.93	7.5	4.0	1.4	6.9	2.8	1.3	1	0	0	1	1	1	0	Herpesvirus	UL6	like
DUF2203	PF09969.4	gi|124027380|ref|YP_001012700.1|	-	1.3	9.3	5.7	2.3	8.4	2.2	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF607	PF04678.8	gi|124027380|ref|YP_001012700.1|	-	1.5	8.6	4.3	2.3	8.0	2.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF607
COG2	PF06148.6	gi|124027380|ref|YP_001012700.1|	-	1.6	8.6	6.7	5.5	6.8	2.8	2.2	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Bap31	PF05529.7	gi|124027380|ref|YP_001012700.1|	-	1.7	8.0	4.7	2.7	7.4	3.2	1.4	1	0	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
Prefoldin	PF02996.12	gi|124027380|ref|YP_001012700.1|	-	1.9	8.1	9.6	0.39	10.3	2.1	2.4	2	1	1	3	3	2	0	Prefoldin	subunit
GvpL_GvpF	PF06386.6	gi|124027380|ref|YP_001012700.1|	-	2.3	7.7	7.8	2.9	7.4	5.2	1.4	1	1	0	1	1	1	0	Gas	vesicle	synthesis	protein	GvpL/GvpF
DUF848	PF05852.6	gi|124027380|ref|YP_001012700.1|	-	2.5	7.9	8.3	1.7	8.5	4.6	1.5	2	0	0	2	2	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DUF1633	PF07794.6	gi|124027380|ref|YP_001012700.1|	-	2.9	5.7	5.7	3.4	5.4	3.7	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1633)
DUF3782	PF12644.2	gi|124027380|ref|YP_001012700.1|	-	3.1	7.6	10.1	77	3.1	7.0	2.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3782)
DivIC	PF04977.10	gi|124027380|ref|YP_001012700.1|	-	3.5	7.1	18.5	0.034	13.6	5.7	2.7	3	1	1	4	4	2	0	Septum	formation	initiator
Mnd1	PF03962.10	gi|124027380|ref|YP_001012700.1|	-	3.6	7.2	10.7	4.7	6.8	6.7	1.6	1	1	0	1	1	1	0	Mnd1	family
Viral_P18	PF04521.8	gi|124027380|ref|YP_001012700.1|	-	4	6.9	6.2	8.2	5.8	4.3	1.5	1	0	0	1	1	1	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
Mei5	PF10376.4	gi|124027380|ref|YP_001012700.1|	-	4.7	6.6	12.3	31	4.0	8.5	2.0	1	1	0	1	1	1	0	Double-strand	recombination	repair	protein
Fmp27_WPPW	PF10359.4	gi|124027380|ref|YP_001012700.1|	-	4.8	5.4	6.0	6.2	5.1	4.2	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF4404	PF14357.1	gi|124027380|ref|YP_001012700.1|	-	5	7.6	9.8	6.2	7.3	3.8	2.5	2	1	1	3	3	2	0	Domain	of	unknown	function	(DUF4404)
DUF904	PF06005.7	gi|124027380|ref|YP_001012700.1|	-	6.2	7.1	15.5	15	5.9	10.8	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
DivIVA	PF05103.8	gi|124027380|ref|YP_001012700.1|	-	8	6.5	11.7	5.8	6.9	6.5	2.0	2	1	0	2	2	1	0	DivIVA	protein
KfrA_N	PF11740.3	gi|124027380|ref|YP_001012700.1|	-	8.3	6.8	22.5	0.94	9.9	8.8	3.0	1	1	1	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
WXG100	PF06013.7	gi|124027380|ref|YP_001012700.1|	-	9.2	6.3	7.6	22	5.1	1.9	2.8	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
Peptidase_M17	PF00883.16	gi|124027381|ref|YP_001012701.1|	-	2.2e-110	368.3	0.0	3e-110	367.9	0.0	1.2	1	0	0	1	1	1	1	Cytosol	aminopeptidase	family,	catalytic	domain
Peptidase_M17_N	PF02789.12	gi|124027381|ref|YP_001012701.1|	-	6.4e-11	42.0	1.2	6.4e-11	42.0	0.8	2.7	2	1	1	3	3	3	1	Cytosol	aminopeptidase	family,	N-terminal	domain
Pyr_redox_2	PF07992.9	gi|124027382|ref|YP_001012702.1|	-	5.1e-22	78.7	0.0	1.1e-21	77.6	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027382|ref|YP_001012702.1|	-	1.8e-14	54.3	0.0	3.1e-06	27.3	0.0	2.2	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|124027382|ref|YP_001012702.1|	-	2.3e-10	40.7	0.4	0.00027	21.2	0.0	3.0	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|124027382|ref|YP_001012702.1|	-	1.4e-08	34.6	1.9	1.4e-08	34.5	0.0	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|124027382|ref|YP_001012702.1|	-	4.1e-06	25.5	0.0	8e-06	24.5	0.0	1.4	1	0	0	1	1	1	1	HI0933-like	protein
Shikimate_DH	PF01488.15	gi|124027382|ref|YP_001012702.1|	-	1.5e-05	25.1	0.1	1.4	9.0	0.0	3.2	2	1	0	3	3	3	2	Shikimate	/	quinate	5-dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|124027382|ref|YP_001012702.1|	-	1.6e-05	24.5	0.2	0.091	12.3	0.0	2.8	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_10	PF13460.1	gi|124027382|ref|YP_001012702.1|	-	1.7e-05	24.9	0.0	0.014	15.4	0.0	2.4	2	1	0	2	2	2	1	NADH(P)-binding
Thi4	PF01946.12	gi|124027382|ref|YP_001012702.1|	-	6.8e-05	22.0	0.0	0.00016	20.8	0.0	1.6	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.19	gi|124027382|ref|YP_001012702.1|	-	0.00012	21.1	0.0	0.00012	21.1	0.0	3.1	3	1	0	4	4	4	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|124027382|ref|YP_001012702.1|	-	0.00028	20.0	0.0	0.00075	18.6	0.0	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_2	PF00890.19	gi|124027382|ref|YP_001012702.1|	-	0.00085	18.2	0.5	0.0059	15.5	0.0	2.5	2	1	1	3	3	3	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|124027382|ref|YP_001012702.1|	-	0.0015	18.3	0.1	0.0065	16.2	0.0	2.0	2	0	0	2	2	2	1	FAD-NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|124027382|ref|YP_001012702.1|	-	0.0018	17.6	0.0	0.004	16.5	0.0	1.6	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
YjeF_N	PF03853.10	gi|124027382|ref|YP_001012702.1|	-	0.0034	17.0	0.0	1.1	8.8	0.0	2.3	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
NAD_Gly3P_dh_N	PF01210.18	gi|124027382|ref|YP_001012702.1|	-	0.0061	16.3	0.0	0.01	15.5	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.13	gi|124027382|ref|YP_001012702.1|	-	0.02	14.9	0.0	0.5	10.3	0.0	2.3	2	0	0	2	2	2	0	TrkA-N	domain
DJ-1_PfpI	PF01965.19	gi|124027382|ref|YP_001012702.1|	-	0.023	14.1	0.0	4.4	6.7	0.0	2.4	1	1	1	2	2	2	0	DJ-1/PfpI	family
FMO-like	PF00743.14	gi|124027382|ref|YP_001012702.1|	-	0.023	12.8	0.0	0.96	7.5	0.0	2.0	2	0	0	2	2	2	0	Flavin-binding	monooxygenase-like
ApbA	PF02558.11	gi|124027382|ref|YP_001012702.1|	-	0.027	13.9	0.1	0.075	12.4	0.0	1.9	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
FAD_oxidored	PF12831.2	gi|124027382|ref|YP_001012702.1|	-	0.033	13.2	0.0	0.033	13.2	0.0	1.5	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|124027382|ref|YP_001012702.1|	-	0.039	12.8	1.9	0.63	8.8	0.1	2.8	2	1	1	3	3	3	0	Glucose	inhibited	division	protein	A
2-Hacid_dh_C	PF02826.14	gi|124027382|ref|YP_001012702.1|	-	0.039	13.0	0.2	0.32	10.1	0.0	2.3	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.1	gi|124027382|ref|YP_001012702.1|	-	0.063	12.1	0.0	1.1	8.1	0.0	2.5	3	0	0	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_2	PF03446.10	gi|124027382|ref|YP_001012702.1|	-	0.099	12.4	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|124027382|ref|YP_001012702.1|	-	0.26	10.9	1.1	0.49	10.0	0.0	2.0	3	0	0	3	3	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_5	PF07994.7	gi|124027383|ref|YP_001012703.1|	-	7.2e-43	147.1	0.0	8.4e-43	146.9	0.0	1.0	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Inos-1-P_synth	PF01658.12	gi|124027383|ref|YP_001012703.1|	-	3.1e-25	88.1	0.0	4.9e-25	87.5	0.0	1.3	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
ARL2_Bind_BART	PF11527.3	gi|124027384|ref|YP_001012704.1|	-	0.034	13.9	0.0	0.049	13.4	0.0	1.3	1	0	0	1	1	1	0	The	ARF-like	2	binding	protein	BART
LytR_C	PF13399.1	gi|124027384|ref|YP_001012704.1|	-	0.035	14.4	0.0	0.68	10.3	0.0	2.1	2	0	0	2	2	2	0	LytR	cell	envelope-related	transcriptional	attenuator
IF-2B	PF01008.12	gi|124027385|ref|YP_001012705.1|	-	2.7e-90	302.2	0.2	3e-90	302.0	0.2	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Hexapep	PF00132.19	gi|124027385|ref|YP_001012705.1|	-	0.11	12.0	0.4	3	7.5	0.5	2.4	2	0	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
IF-2B	PF01008.12	gi|124027386|ref|YP_001012706.1|	-	2.7e-53	180.7	0.2	3.4e-53	180.4	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Pyr_redox	PF00070.22	gi|124027386|ref|YP_001012706.1|	-	0.11	12.8	2.3	0.18	12.2	0.2	2.5	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Amidohydro_1	PF01979.15	gi|124027387|ref|YP_001012707.1|	-	9.4e-08	32.0	0.0	1.6e-07	31.2	0.0	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|124027387|ref|YP_001012707.1|	-	0.00049	19.4	0.0	0.0011	18.2	0.0	1.6	1	1	0	1	1	1	1	Amidohydrolase	family
MoCF_biosynth	PF00994.19	gi|124027388|ref|YP_001012708.1|	-	1.4e-24	86.1	0.1	1.7e-24	85.8	0.0	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
AAA_19	PF13245.1	gi|124027388|ref|YP_001012708.1|	-	5.9e-05	22.7	0.5	0.00049	19.7	0.1	2.2	1	1	1	2	2	2	2	Part	of	AAA	domain
FlpD	PF02662.11	gi|124027388|ref|YP_001012708.1|	-	0.097	12.3	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Nitroreductase	PF00881.19	gi|124027389|ref|YP_001012709.1|	-	5.1e-32	110.9	0.0	7.2e-32	110.4	0.0	1.2	1	0	0	1	1	1	1	Nitroreductase	family
RuBisCO_large	PF00016.15	gi|124027390|ref|YP_001012710.1|	-	4e-87	291.9	0.0	5.2e-87	291.5	0.0	1.1	1	0	0	1	1	1	1	Ribulose	bisphosphate	carboxylase	large	chain,	catalytic	domain
RuBisCO_large_N	PF02788.11	gi|124027390|ref|YP_001012710.1|	-	1.2e-33	115.4	0.0	1.1e-32	112.4	0.0	2.4	3	0	0	3	3	3	1	Ribulose	bisphosphate	carboxylase	large	chain,	N-terminal	domain
LigA	PF07746.6	gi|124027390|ref|YP_001012710.1|	-	0.016	15.2	0.1	0.17	11.9	0.0	2.2	2	0	0	2	2	2	0	Aromatic-ring-opening	dioxygenase	LigAB,	LigA	subunit
Peptidase_C25	PF01364.13	gi|124027391|ref|YP_001012711.1|	-	6.3e-58	196.5	0.0	8e-58	196.2	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	C25
Hydrolase_3	PF08282.7	gi|124027392|ref|YP_001012712.1|	-	1e-21	77.6	0.0	2.6e-10	40.3	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|124027392|ref|YP_001012712.1|	-	3e-08	33.2	0.0	8e-07	28.6	0.0	2.0	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.2	gi|124027392|ref|YP_001012712.1|	-	1.4e-07	31.8	0.9	2.9e-05	24.3	0.0	2.7	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|124027392|ref|YP_001012712.1|	-	6.4e-05	22.7	0.0	0.00014	21.7	0.0	1.6	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|124027392|ref|YP_001012712.1|	-	0.00062	20.2	1.7	0.092	13.1	0.1	3.0	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.11	gi|124027392|ref|YP_001012712.1|	-	0.03	13.2	0.0	1.2	7.9	0.0	2.1	2	0	0	2	2	2	0	Trehalose-phosphatase
HAD_2	PF13419.1	gi|124027392|ref|YP_001012712.1|	-	0.12	12.6	0.0	9.8	6.3	0.0	2.9	2	1	1	3	3	3	0	Haloacid	dehalogenase-like	hydrolase
FAA_hydrolase_N	PF09298.6	gi|124027392|ref|YP_001012712.1|	-	0.17	11.9	0.1	0.29	11.1	0.0	1.4	1	0	0	1	1	1	0	Fumarylacetoacetase	N-terminal
CTP-dep_RFKase	PF01982.11	gi|124027393|ref|YP_001012713.1|	-	3.7e-29	100.7	0.0	4.3e-29	100.5	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
Radical_SAM	PF04055.16	gi|124027394|ref|YP_001012714.1|	-	5.6e-08	33.1	0.1	1.2e-07	32.0	0.0	1.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM	PF04055.16	gi|124027395|ref|YP_001012715.1|	-	0.0071	16.5	0.0	0.045	13.9	0.0	2.2	1	1	1	2	2	2	1	Radical	SAM	superfamily
NAD_binding_7	PF13241.1	gi|124027397|ref|YP_001012717.1|	-	5.5e-22	77.9	0.2	1.2e-21	76.8	0.0	1.6	2	0	0	2	2	2	1	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|124027397|ref|YP_001012717.1|	-	1.9e-07	31.0	0.1	3.9e-07	30.0	0.1	1.5	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_10	PF13460.1	gi|124027397|ref|YP_001012717.1|	-	3.5e-07	30.3	0.8	5e-07	29.9	0.5	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Saccharop_dh	PF03435.13	gi|124027397|ref|YP_001012717.1|	-	4.8e-06	25.8	0.1	5.2e-06	25.6	0.1	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NmrA	PF05368.8	gi|124027397|ref|YP_001012717.1|	-	0.0017	17.6	0.1	0.0025	17.1	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
3HCDH_N	PF02737.13	gi|124027397|ref|YP_001012717.1|	-	0.0023	17.6	0.0	0.0049	16.5	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|124027397|ref|YP_001012717.1|	-	0.0025	18.2	0.0	0.007	16.7	0.0	1.9	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Semialdhyde_dh	PF01118.19	gi|124027397|ref|YP_001012717.1|	-	0.0043	17.3	0.1	0.0071	16.6	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|124027397|ref|YP_001012717.1|	-	0.0089	15.9	0.6	0.022	14.7	0.1	1.8	1	1	1	2	2	2	1	short	chain	dehydrogenase
F420_oxidored	PF03807.12	gi|124027397|ref|YP_001012717.1|	-	0.01	16.2	0.3	0.029	14.7	0.1	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.16	gi|124027397|ref|YP_001012717.1|	-	0.01	15.4	0.1	0.023	14.2	0.1	1.5	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3Beta_HSD	PF01073.14	gi|124027397|ref|YP_001012717.1|	-	0.011	14.4	0.0	0.018	13.7	0.0	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
UDPG_MGDP_dh_C	PF03720.10	gi|124027397|ref|YP_001012717.1|	-	0.019	15.1	0.2	0.034	14.3	0.1	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Shikimate_DH	PF01488.15	gi|124027397|ref|YP_001012717.1|	-	0.027	14.5	0.1	0.077	13.0	0.0	1.8	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|124027397|ref|YP_001012717.1|	-	0.03	14.0	0.1	0.064	12.9	0.1	1.6	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|124027397|ref|YP_001012717.1|	-	0.039	13.3	0.0	0.06	12.7	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GARS_N	PF02844.10	gi|124027397|ref|YP_001012717.1|	-	0.044	14.2	0.1	0.077	13.4	0.0	1.4	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
ThiF	PF00899.16	gi|124027397|ref|YP_001012717.1|	-	0.072	12.9	7.2	1.2	8.9	0.1	2.5	1	1	1	2	2	2	0	ThiF	family
GFO_IDH_MocA	PF01408.17	gi|124027397|ref|YP_001012717.1|	-	0.073	13.5	0.0	0.17	12.4	0.0	1.6	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
PIN	PF01850.16	gi|124027397|ref|YP_001012717.1|	-	0.51	10.6	4.4	0.25	11.6	0.2	2.1	2	1	0	2	2	2	0	PIN	domain
Nol1_Nop2_Fmu	PF01189.12	gi|124027398|ref|YP_001012718.1|	-	1.1e-62	212.0	0.0	1.4e-62	211.6	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|124027398|ref|YP_001012718.1|	-	1.5e-10	40.8	0.0	3.2e-10	39.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124027398|ref|YP_001012718.1|	-	3.6e-10	39.8	0.0	1.6e-09	37.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124027398|ref|YP_001012718.1|	-	1.4e-06	28.8	0.0	3.5e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|124027398|ref|YP_001012718.1|	-	4.6e-06	26.7	0.0	1.1e-05	25.4	0.0	1.6	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
MTS	PF05175.9	gi|124027398|ref|YP_001012718.1|	-	0.00058	19.2	0.0	0.0011	18.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Fibrillarin	PF01269.12	gi|124027398|ref|YP_001012718.1|	-	0.0023	16.8	0.0	0.0041	16.0	0.0	1.3	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_23	PF13489.1	gi|124027398|ref|YP_001012718.1|	-	0.0067	16.1	0.0	0.17	11.6	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
NusB	PF01029.13	gi|124027398|ref|YP_001012718.1|	-	0.012	15.6	0.5	0.074	13.0	0.1	2.4	2	1	1	3	3	3	0	NusB	family
Methyltransf_24	PF13578.1	gi|124027398|ref|YP_001012718.1|	-	0.012	16.4	0.0	0.054	14.3	0.0	2.1	2	0	0	2	2	1	0	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|124027398|ref|YP_001012718.1|	-	0.017	14.2	0.0	0.14	11.2	0.0	2.0	1	1	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
CRS1_YhbY	PF01985.16	gi|124027398|ref|YP_001012718.1|	-	0.021	14.8	0.2	0.06	13.3	0.1	1.8	1	0	0	1	1	1	0	CRS1	/	YhbY	(CRM)	domain
Methyltransf_5	PF01795.14	gi|124027398|ref|YP_001012718.1|	-	0.042	13.1	0.0	1.1	8.5	0.0	2.5	3	0	0	3	3	3	0	MraW	methylase	family
RrnaAD	PF00398.15	gi|124027398|ref|YP_001012718.1|	-	0.054	12.5	0.0	0.35	9.8	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	RNA	adenine	dimethylase
TrkH	PF02386.11	gi|124027401|ref|YP_001012721.1|	-	1.4e-43	148.9	24.6	2.9e-42	144.5	14.0	2.5	2	1	0	2	2	2	2	Cation	transport	protein
Cytochrom_B_C	PF00032.12	gi|124027401|ref|YP_001012721.1|	-	2.9	8.1	11.2	1.2	9.3	0.1	3.6	4	1	0	4	4	4	0	Cytochrome	b(C-terminal)/b6/petD
Peptidase_S9	PF00326.16	gi|124027402|ref|YP_001012722.1|	-	4.8e-55	186.0	0.0	6.7e-55	185.6	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.13	gi|124027402|ref|YP_001012722.1|	-	4.7e-10	39.3	0.2	1.1e-05	25.0	0.1	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_6	PF12697.2	gi|124027402|ref|YP_001012722.1|	-	6.2e-10	39.3	0.1	1.6e-08	34.7	0.0	2.7	2	1	0	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|124027402|ref|YP_001012722.1|	-	9.6e-10	38.3	0.0	1.9e-09	37.3	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
PD40	PF07676.7	gi|124027402|ref|YP_001012722.1|	-	1.3e-09	37.4	3.0	0.11	12.1	0.0	5.8	6	0	0	6	6	6	3	WD40-like	Beta	Propeller	Repeat
PhoPQ_related	PF10142.4	gi|124027402|ref|YP_001012722.1|	-	0.00091	17.8	0.1	0.0022	16.5	0.0	1.5	2	0	0	2	2	2	1	PhoPQ-activated	pathogenicity-related	protein
DPPIV_N	PF00930.16	gi|124027402|ref|YP_001012722.1|	-	0.0012	17.5	0.2	1.3	7.5	0.0	3.8	3	1	1	4	4	4	2	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
DLH	PF01738.13	gi|124027402|ref|YP_001012722.1|	-	0.0014	17.9	0.0	0.0055	16.0	0.0	1.8	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_1	PF00561.15	gi|124027402|ref|YP_001012722.1|	-	0.0025	17.4	0.1	0.06	12.8	0.0	2.1	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
DUF2920	PF11144.3	gi|124027402|ref|YP_001012722.1|	-	0.0044	16.0	0.0	0.32	9.9	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2920)
AXE1	PF05448.7	gi|124027402|ref|YP_001012722.1|	-	0.0046	15.4	0.4	0.16	10.4	0.3	2.3	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Gmad1	PF10647.4	gi|124027402|ref|YP_001012722.1|	-	0.03	13.7	0.1	0.44	9.8	0.1	2.2	2	0	0	2	2	2	0	Lipoprotein	LpqB	beta-propeller	domain
Abhydrolase_3	PF07859.8	gi|124027402|ref|YP_001012722.1|	-	0.031	13.8	0.0	1.8	8.1	0.0	2.4	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
WD40	PF00400.27	gi|124027402|ref|YP_001012722.1|	-	0.039	13.8	1.1	35	4.4	0.0	3.7	3	1	0	3	3	3	0	WD	domain,	G-beta	repeat
eIF2A	PF08662.6	gi|124027402|ref|YP_001012722.1|	-	0.11	12.1	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	eIF2A
Archease	PF01951.11	gi|124027403|ref|YP_001012723.1|	-	5e-45	152.8	0.7	5.9e-45	152.5	0.5	1.1	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
UPF0150	PF03681.10	gi|124027403|ref|YP_001012723.1|	-	0.28	10.8	2.5	4.5	6.9	0.0	3.2	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0150)
Flavin_Reduct	PF01613.13	gi|124027404|ref|YP_001012724.1|	-	1.7e-22	79.9	0.0	2e-22	79.6	0.0	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
RtcB	PF01139.12	gi|124027405|ref|YP_001012725.1|	-	6.2e-150	499.8	0.0	7e-150	499.6	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
Put_DNA-bind_N	PF06971.8	gi|124027405|ref|YP_001012725.1|	-	0.023	14.4	0.1	0.088	12.5	0.0	2.0	2	0	0	2	2	2	0	Putative	DNA-binding	protein	N-terminus
Pyr_redox_2	PF07992.9	gi|124027406|ref|YP_001012726.1|	-	6.9e-15	55.4	0.0	1e-14	54.9	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|124027406|ref|YP_001012726.1|	-	4.4e-06	27.0	0.3	0.0031	17.8	0.0	3.3	4	0	0	4	4	4	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|124027406|ref|YP_001012726.1|	-	9.1e-05	21.5	0.0	0.033	13.1	0.0	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.1	gi|124027406|ref|YP_001012726.1|	-	0.00015	21.5	0.0	0.17	11.6	0.0	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|124027406|ref|YP_001012726.1|	-	0.00028	19.6	0.0	0.00052	18.7	0.0	1.4	1	0	0	1	1	1	1	Tryptophan	halogenase
NAD_binding_8	PF13450.1	gi|124027406|ref|YP_001012726.1|	-	0.015	15.3	0.0	0.033	14.2	0.0	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.1	gi|124027406|ref|YP_001012726.1|	-	0.017	15.3	0.0	0.032	14.4	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
HI0933_like	PF03486.9	gi|124027406|ref|YP_001012726.1|	-	0.13	10.7	0.1	0.35	9.2	0.0	1.7	2	0	0	2	2	2	0	HI0933-like	protein
FadR_C	PF07840.7	gi|124027407|ref|YP_001012727.1|	-	0.0069	16.0	0.5	0.011	15.3	0.3	1.4	1	0	0	1	1	1	1	FadR	C-terminal	domain
FAD-SLDH	PF12318.3	gi|124027407|ref|YP_001012727.1|	-	0.012	15.2	0.1	0.031	13.9	0.0	1.7	2	0	0	2	2	2	0	Membrane	bound	FAD	containing	D-sorbitol	dehydrogenase
Gp23	PF07068.6	gi|124027407|ref|YP_001012727.1|	-	0.066	11.7	0.2	0.08	11.4	0.1	1.1	1	0	0	1	1	1	0	Major	capsid	protein	Gp23
DUF1641	PF07849.6	gi|124027407|ref|YP_001012727.1|	-	0.09	12.4	0.1	0.17	11.5	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1641)
DUF1342	PF07072.6	gi|124027407|ref|YP_001012727.1|	-	0.11	12.1	0.6	0.18	11.4	0.2	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1342)
DUF1338	PF07063.8	gi|124027407|ref|YP_001012727.1|	-	0.12	11.4	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1338)
FumaraseC_C	PF10415.4	gi|124027407|ref|YP_001012727.1|	-	0.22	11.6	1.3	7.5	6.7	0.1	2.5	2	0	0	2	2	2	0	Fumarase	C	C-terminus
UPF0051	PF01458.12	gi|124027408|ref|YP_001012728.1|	-	4.7e-39	134.1	0.2	6.4e-39	133.7	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.12	gi|124027409|ref|YP_001012729.1|	-	6.3e-64	215.5	0.0	7.7e-64	215.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
ABC_tran	PF00005.22	gi|124027410|ref|YP_001012730.1|	-	5.6e-21	75.2	0.0	7.2e-21	74.9	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027410|ref|YP_001012730.1|	-	4.7e-12	46.4	0.0	1.2e-06	28.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027410|ref|YP_001012730.1|	-	3e-07	29.8	0.0	0.004	16.4	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|124027410|ref|YP_001012730.1|	-	9.1e-05	21.9	0.0	0.00029	20.3	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|124027410|ref|YP_001012730.1|	-	0.00096	18.6	0.1	0.59	9.5	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_17	PF13207.1	gi|124027410|ref|YP_001012730.1|	-	0.001	19.8	0.1	0.032	15.0	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|124027410|ref|YP_001012730.1|	-	0.0024	18.0	0.2	0.02	15.0	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027410|ref|YP_001012730.1|	-	0.0026	17.2	0.0	0.0049	16.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|124027410|ref|YP_001012730.1|	-	0.0035	17.2	0.0	0.006	16.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|124027410|ref|YP_001012730.1|	-	0.008	15.2	0.0	0.021	13.9	0.0	1.6	2	0	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_28	PF13521.1	gi|124027410|ref|YP_001012730.1|	-	0.0085	16.0	0.0	0.19	11.7	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|124027410|ref|YP_001012730.1|	-	0.0094	15.6	2.5	0.78	9.5	0.1	3.5	3	1	0	3	3	3	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|124027410|ref|YP_001012730.1|	-	0.013	15.3	0.0	0.1	12.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|124027410|ref|YP_001012730.1|	-	0.016	15.5	0.1	0.023	15.0	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|124027410|ref|YP_001012730.1|	-	0.017	13.6	0.0	0.77	8.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|124027410|ref|YP_001012730.1|	-	0.018	14.7	0.0	0.49	10.1	0.0	2.6	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|124027410|ref|YP_001012730.1|	-	0.023	14.9	0.5	0.17	12.1	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|124027410|ref|YP_001012730.1|	-	0.026	14.1	0.0	0.057	13.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
T2SE	PF00437.15	gi|124027410|ref|YP_001012730.1|	-	0.037	12.9	0.0	0.057	12.3	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.7	gi|124027410|ref|YP_001012730.1|	-	0.042	13.5	0.0	0.09	12.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.1	gi|124027410|ref|YP_001012730.1|	-	0.065	13.2	0.1	0.21	11.5	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_24	PF13479.1	gi|124027410|ref|YP_001012730.1|	-	0.069	12.7	0.1	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|124027410|ref|YP_001012730.1|	-	0.071	11.9	0.2	0.21	10.3	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
AAA	PF00004.24	gi|124027410|ref|YP_001012730.1|	-	0.083	13.0	0.1	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
APS_kinase	PF01583.15	gi|124027410|ref|YP_001012730.1|	-	0.085	12.5	0.0	0.2	11.2	0.0	1.8	2	0	0	2	2	2	0	Adenylylsulphate	kinase
S4	PF01479.20	gi|124027410|ref|YP_001012730.1|	-	0.13	11.7	0.5	14	5.2	0.0	3.0	3	0	0	3	3	3	0	S4	domain
DUF258	PF03193.11	gi|124027410|ref|YP_001012730.1|	-	0.14	11.3	0.0	0.23	10.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
PAPS_reduct	PF01507.14	gi|124027411|ref|YP_001012731.1|	-	1.5e-11	44.4	0.0	5.1e-11	42.7	0.0	1.9	2	0	0	2	2	2	1	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_3	PF01171.15	gi|124027411|ref|YP_001012731.1|	-	0.025	14.0	0.0	0.059	12.8	0.0	1.6	2	0	0	2	2	2	0	PP-loop	family
PCP_red	PF08369.5	gi|124027411|ref|YP_001012731.1|	-	0.03	14.1	0.0	1.3	8.9	0.0	2.7	2	0	0	2	2	2	0	Proto-chlorophyllide	reductase	57	kD	subunit
Ribosomal_S13	PF00416.17	gi|124027412|ref|YP_001012732.1|	-	2.5e-30	105.0	0.0	3e-30	104.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
S4	PF01479.20	gi|124027413|ref|YP_001012733.1|	-	5.3e-15	54.5	0.2	1e-14	53.6	0.1	1.5	1	0	0	1	1	1	1	S4	domain
Ribosomal_S4	PF00163.14	gi|124027413|ref|YP_001012733.1|	-	3.9e-06	27.1	0.6	8e-06	26.1	0.4	1.6	1	0	0	1	1	1	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S11	PF00411.14	gi|124027414|ref|YP_001012734.1|	-	1.1e-43	147.9	0.1	1.2e-43	147.7	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S11
M20_dimer	PF07687.9	gi|124027414|ref|YP_001012734.1|	-	0.11	12.2	0.2	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Peptidase	dimerisation	domain
RNA_pol_A_bac	PF01000.21	gi|124027415|ref|YP_001012735.1|	-	9.5e-29	99.8	0.0	1.9e-28	98.8	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|124027415|ref|YP_001012735.1|	-	4.9e-14	51.1	0.0	6.3e-14	50.8	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosomal_L18e	PF00828.14	gi|124027416|ref|YP_001012736.1|	-	9.6e-14	51.8	0.1	1.2e-13	51.5	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
HTH_24	PF13412.1	gi|124027416|ref|YP_001012736.1|	-	0.0073	15.6	1.0	1.8	7.9	0.1	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
Ribosomal_L13	PF00572.13	gi|124027417|ref|YP_001012737.1|	-	2.8e-27	95.3	0.1	3.6e-27	94.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_S9	PF00380.14	gi|124027418|ref|YP_001012738.1|	-	1.2e-33	115.9	0.0	1.5e-33	115.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
RNA_pol_N	PF01194.12	gi|124027419|ref|YP_001012739.1|	-	2.9e-27	94.4	0.3	3.3e-27	94.2	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.7	gi|124027419|ref|YP_001012739.1|	-	0.0024	17.8	0.1	0.004	17.2	0.1	1.4	1	1	0	1	1	1	1	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Ribosomal_S2	PF00318.15	gi|124027420|ref|YP_001012740.1|	-	1.1e-42	145.6	0.0	3.8e-21	75.2	0.1	2.0	1	1	1	2	2	2	2	Ribosomal	protein	S2
PHP	PF02811.14	gi|124027420|ref|YP_001012740.1|	-	0.026	14.3	0.0	0.048	13.4	0.0	1.4	1	0	0	1	1	1	0	PHP	domain
Peripla_BP_4	PF13407.1	gi|124027420|ref|YP_001012740.1|	-	0.17	11.2	0.6	0.25	10.6	0.4	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
Memo	PF01875.12	gi|124027421|ref|YP_001012741.1|	-	1.1e-78	263.9	0.0	1.3e-78	263.7	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
LigB	PF02900.13	gi|124027421|ref|YP_001012741.1|	-	4.8e-07	29.0	0.0	6.8e-07	28.5	0.0	1.2	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
GFO_IDH_MocA	PF01408.17	gi|124027421|ref|YP_001012741.1|	-	0.03	14.8	0.0	0.15	12.6	0.0	2.0	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Semialdhyde_dh	PF01118.19	gi|124027421|ref|YP_001012741.1|	-	0.046	14.0	0.1	0.09	13.0	0.1	1.5	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
AA_kinase	PF00696.23	gi|124027423|ref|YP_001012743.1|	-	3.8e-21	75.7	0.0	9.6e-21	74.4	0.0	1.6	1	1	0	1	1	1	1	Amino	acid	kinase	family
FMN_dh	PF01070.13	gi|124027424|ref|YP_001012744.1|	-	8.3e-30	103.8	2.0	1.2e-16	60.5	0.0	2.4	1	1	1	2	2	2	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.20	gi|124027424|ref|YP_001012744.1|	-	0.00034	19.6	1.2	0.00081	18.3	0.8	1.6	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.12	gi|124027424|ref|YP_001012744.1|	-	0.002	17.0	0.1	0.002	17.0	0.1	1.7	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
DeoC	PF01791.4	gi|124027424|ref|YP_001012744.1|	-	0.016	14.4	3.3	0.32	10.2	0.1	2.3	2	0	0	2	2	2	0	DeoC/LacD	family	aldolase
PcrB	PF01884.12	gi|124027424|ref|YP_001012744.1|	-	0.15	11.2	0.6	2.2	7.4	0.0	2.2	2	0	0	2	2	2	0	PcrB	family
DHO_dh	PF01180.16	gi|124027424|ref|YP_001012744.1|	-	0.56	9.1	2.8	0.4	9.5	0.3	1.8	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
polyprenyl_synt	PF00348.12	gi|124027425|ref|YP_001012745.1|	-	3.3e-71	239.1	0.0	4.2e-71	238.8	0.0	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
DUF2118	PF09891.4	gi|124027426|ref|YP_001012746.1|	-	2.5e-51	173.3	0.0	2.8e-51	173.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
Biotin_lipoyl	PF00364.17	gi|124027426|ref|YP_001012746.1|	-	0.0021	17.6	0.0	0.0037	16.8	0.0	1.4	1	0	0	1	1	1	1	Biotin-requiring	enzyme
Antitoxin-MazE	PF04014.13	gi|124027426|ref|YP_001012746.1|	-	0.0053	16.4	0.1	0.016	14.8	0.0	1.8	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
Biotin_lipoyl_2	PF13533.1	gi|124027426|ref|YP_001012746.1|	-	0.026	14.1	0.0	0.084	12.5	0.0	1.9	1	1	1	2	2	2	0	Biotin-lipoyl	like
NQRA	PF05896.6	gi|124027426|ref|YP_001012746.1|	-	0.071	12.2	0.0	0.1	11.7	0.0	1.1	1	0	0	1	1	1	0	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
tRNA-synt_1c	PF00749.16	gi|124027427|ref|YP_001012747.1|	-	9.5e-76	254.4	0.0	1.3e-75	254.0	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|124027427|ref|YP_001012747.1|	-	5.8e-31	107.4	0.0	1.1e-30	106.5	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
DUF4619	PF15398.1	gi|124027427|ref|YP_001012747.1|	-	0.064	12.6	0.0	0.1	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4619)
YqeY	PF09424.5	gi|124027427|ref|YP_001012747.1|	-	2.1	8.1	8.1	0.77	9.6	2.7	2.3	2	1	1	3	3	3	0	Yqey-like	protein
Ribosomal_L7Ae	PF01248.21	gi|124027428|ref|YP_001012748.1|	-	1.7e-31	107.5	0.9	2.3e-31	107.1	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|124027428|ref|YP_001012748.1|	-	0.00088	19.0	0.0	0.0013	18.4	0.0	1.3	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
RNase_P_pop3	PF08228.6	gi|124027428|ref|YP_001012748.1|	-	0.0041	16.9	0.0	0.0048	16.7	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	Pop3
Birna_VP2	PF01766.12	gi|124027429|ref|YP_001012749.1|	-	0.019	13.8	0.0	0.029	13.3	0.0	1.2	1	0	0	1	1	1	0	Birnavirus	VP2	protein
EamA	PF00892.15	gi|124027430|ref|YP_001012750.1|	-	8.6e-19	67.8	32.5	1.2e-13	51.2	8.9	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|124027430|ref|YP_001012750.1|	-	1.4e-05	25.2	31.0	0.00018	21.6	4.5	3.4	2	2	2	4	4	4	2	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|124027430|ref|YP_001012750.1|	-	0.011	15.3	5.2	0.011	15.3	3.6	2.6	2	1	0	2	2	2	0	Triose-phosphate	Transporter	family
UPF0546	PF10639.4	gi|124027430|ref|YP_001012750.1|	-	0.018	14.8	2.6	0.072	12.9	0.5	2.8	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0546
Nuc_sug_transp	PF04142.10	gi|124027430|ref|YP_001012750.1|	-	0.19	10.8	3.0	0.19	10.8	0.1	2.0	2	0	0	2	2	2	0	Nucleotide-sugar	transporter
Ribosomal_S28e	PF01200.13	gi|124027431|ref|YP_001012751.1|	-	1.4e-30	104.8	4.8	1.6e-30	104.6	3.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S28e
KOW	PF00467.24	gi|124027431|ref|YP_001012751.1|	-	0.26	11.0	1.9	0.66	9.7	0.2	2.3	2	1	0	2	2	2	0	KOW	motif
Ribosomal_L24e	PF01246.15	gi|124027432|ref|YP_001012752.1|	-	1.4e-24	85.7	0.6	1.4e-24	85.6	0.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.9	gi|124027432|ref|YP_001012752.1|	-	2e-06	27.3	1.3	2.5e-06	27.0	0.9	1.1	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2116	PF09889.4	gi|124027432|ref|YP_001012752.1|	-	0.049	13.4	1.1	7.4	6.4	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
DUF2175	PF09943.4	gi|124027432|ref|YP_001012752.1|	-	0.12	12.4	0.2	0.12	12.4	0.2	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
DUF581	PF04570.9	gi|124027432|ref|YP_001012752.1|	-	0.13	11.5	1.2	0.24	10.7	0.8	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF581)
zinc_ribbon_2	PF13240.1	gi|124027432|ref|YP_001012752.1|	-	0.16	11.5	0.2	0.16	11.5	0.1	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
EamA	PF00892.15	gi|124027433|ref|YP_001012753.1|	-	1.6e-21	76.6	35.6	7.9e-12	45.3	8.4	2.4	1	1	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|124027433|ref|YP_001012753.1|	-	0.00019	21.5	11.8	0.00019	21.5	8.2	4.0	1	1	2	3	3	3	1	Multidrug	resistance	efflux	transporter
UPF0546	PF10639.4	gi|124027433|ref|YP_001012753.1|	-	0.24	11.2	9.4	0.11	12.3	2.8	2.7	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0546
NDK	PF00334.14	gi|124027434|ref|YP_001012754.1|	-	3.8e-57	191.8	0.0	4.2e-57	191.6	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
HMG_box_5	PF14887.1	gi|124027434|ref|YP_001012754.1|	-	0.12	12.1	0.2	0.42	10.4	0.0	1.8	2	0	0	2	2	2	0	HMG	(high	mobility	group)	box	5
MMR_HSR1_C	PF08438.5	gi|124027435|ref|YP_001012755.1|	-	2.1e-41	140.5	0.1	3.5e-41	139.8	0.1	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|124027435|ref|YP_001012755.1|	-	2.6e-18	66.0	0.0	6.3e-18	64.8	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|124027435|ref|YP_001012755.1|	-	1.1e-13	50.7	0.0	2.5e-13	49.6	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|124027435|ref|YP_001012755.1|	-	3.2e-07	29.7	0.1	8.8e-05	21.8	0.0	3.3	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.8	gi|124027435|ref|YP_001012755.1|	-	0.0001	22.0	0.1	0.034	13.9	0.0	2.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF933)
GTP_EFTU	PF00009.22	gi|124027435|ref|YP_001012755.1|	-	0.00021	20.8	0.0	0.11	11.8	0.0	2.8	3	0	0	3	3	3	2	Elongation	factor	Tu	GTP	binding	domain
Dynamin_N	PF00350.18	gi|124027435|ref|YP_001012755.1|	-	0.0017	18.2	0.0	0.043	13.6	0.0	2.4	2	0	0	2	2	2	1	Dynamin	family
MobB	PF03205.9	gi|124027435|ref|YP_001012755.1|	-	0.053	13.2	0.1	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Abhydrolase_6	PF12697.2	gi|124027435|ref|YP_001012755.1|	-	0.095	12.5	0.2	0.33	10.8	0.1	1.8	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
AAA_29	PF13555.1	gi|124027435|ref|YP_001012755.1|	-	0.14	11.7	0.0	0.32	10.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Miro	PF08477.8	gi|124027435|ref|YP_001012755.1|	-	0.14	12.6	0.0	4.7	7.7	0.0	2.5	2	0	0	2	2	2	0	Miro-like	protein
AAA_23	PF13476.1	gi|124027435|ref|YP_001012755.1|	-	0.41	10.9	1.3	0.73	10.1	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
Methyltransf_18	PF12847.2	gi|124027436|ref|YP_001012756.1|	-	1.3e-07	32.1	0.1	2e-07	31.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|124027436|ref|YP_001012756.1|	-	4.1e-06	26.6	0.0	4.8e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124027436|ref|YP_001012756.1|	-	0.00011	22.5	0.0	0.00021	21.6	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124027436|ref|YP_001012756.1|	-	0.00017	21.9	0.0	0.00044	20.6	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124027436|ref|YP_001012756.1|	-	0.00083	18.9	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124027436|ref|YP_001012756.1|	-	0.0021	18.4	0.0	0.004	17.4	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
CMAS	PF02353.15	gi|124027436|ref|YP_001012756.1|	-	0.0024	16.9	0.0	0.0027	16.8	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_26	PF13659.1	gi|124027436|ref|YP_001012756.1|	-	0.0029	17.6	0.2	0.005	16.8	0.1	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
TehB	PF03848.9	gi|124027436|ref|YP_001012756.1|	-	0.0046	16.1	0.0	0.0048	16.0	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
MTS	PF05175.9	gi|124027436|ref|YP_001012756.1|	-	0.0056	16.0	0.0	0.0062	15.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
N2227	PF07942.7	gi|124027436|ref|YP_001012756.1|	-	0.0091	14.9	0.0	0.0099	14.8	0.0	1.1	1	0	0	1	1	1	1	N2227-like	protein
RrnaAD	PF00398.15	gi|124027436|ref|YP_001012756.1|	-	0.015	14.3	0.0	0.018	14.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
PCMT	PF01135.14	gi|124027436|ref|YP_001012756.1|	-	0.026	14.0	0.1	0.031	13.7	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
tRNA_U5-meth_tr	PF05958.6	gi|124027436|ref|YP_001012756.1|	-	0.056	12.1	0.0	0.059	12.0	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_16	PF10294.4	gi|124027436|ref|YP_001012756.1|	-	0.11	11.9	0.0	0.12	11.8	0.0	1.1	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_23	PF13489.1	gi|124027437|ref|YP_001012757.1|	-	0.042	13.5	0.0	0.048	13.3	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
DUF2136	PF09907.4	gi|124027437|ref|YP_001012757.1|	-	0.098	12.7	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2136)
DUF4177	PF13783.1	gi|124027437|ref|YP_001012757.1|	-	0.11	12.2	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4177)
Ribosomal_L15e	PF00827.12	gi|124027438|ref|YP_001012758.1|	-	1e-78	263.2	12.9	1.4e-78	262.8	8.9	1.2	1	0	0	1	1	1	1	Ribosomal	L15
RNA_binding	PF01877.12	gi|124027439|ref|YP_001012759.1|	-	9.2e-32	109.5	0.1	1.1e-31	109.3	0.1	1.0	1	0	0	1	1	1	1	RNA	binding
MttA_Hcf106	PF02416.11	gi|124027439|ref|YP_001012759.1|	-	0.12	11.4	0.2	0.21	10.7	0.2	1.3	1	0	0	1	1	1	0	mttA/Hcf106	family
DUF4471	PF14740.1	gi|124027439|ref|YP_001012759.1|	-	0.23	10.6	0.9	0.31	10.2	0.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4471)
RNase_P_p30	PF01876.11	gi|124027440|ref|YP_001012760.1|	-	5.9e-26	90.5	0.0	8.1e-26	90.0	0.0	1.2	1	0	0	1	1	1	1	RNase	P	subunit	p30
DUF4224	PF13986.1	gi|124027440|ref|YP_001012760.1|	-	0.015	14.7	0.1	0.15	11.6	0.0	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4224)
Glyco_trans_1_4	PF13692.1	gi|124027440|ref|YP_001012760.1|	-	0.15	12.1	0.4	1.4	9.0	0.0	2.3	1	1	1	2	2	2	0	Glycosyl	transferases	group	1
RNase_P_Rpp14	PF01900.14	gi|124027441|ref|YP_001012761.1|	-	4.7e-18	65.0	0.2	7.9e-18	64.3	0.1	1.3	1	0	0	1	1	1	1	Rpp14/Pop5	family
IMS_C	PF11799.3	gi|124027441|ref|YP_001012761.1|	-	0.042	13.7	0.2	0.084	12.8	0.2	1.6	1	1	0	1	1	1	0	impB/mucB/samB	family	C-terminal	domain
RibD_C	PF01872.12	gi|124027442|ref|YP_001012762.1|	-	2.2e-33	115.5	0.0	2.8e-33	115.2	0.0	1.1	1	0	0	1	1	1	1	RibD	C-terminal	domain
DHBP_synthase	PF00926.14	gi|124027443|ref|YP_001012763.1|	-	1.3e-53	181.1	0.0	1.4e-53	180.9	0.0	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
DMRL_synthase	PF00885.14	gi|124027444|ref|YP_001012764.1|	-	7.7e-11	41.8	0.0	8.7e-11	41.6	0.0	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DMRL_synthase	PF00885.14	gi|124027445|ref|YP_001012765.1|	-	1.7e-36	125.0	0.4	1.9e-36	124.8	0.3	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DUF3356	PF11836.3	gi|124027445|ref|YP_001012765.1|	-	0.04	13.7	1.0	2.7	7.8	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3356)
DAHP_synth_1	PF00793.15	gi|124027445|ref|YP_001012765.1|	-	0.068	11.8	0.1	1.8	7.1	0.0	2.1	1	1	1	2	2	2	0	DAHP	synthetase	I	family
Amidohydro_1	PF01979.15	gi|124027446|ref|YP_001012766.1|	-	1e-05	25.3	0.0	2.9e-05	23.8	0.0	1.8	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.6	gi|124027446|ref|YP_001012766.1|	-	2.5e-05	23.6	2.3	0.00034	19.9	1.6	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
A_deaminase	PF00962.17	gi|124027446|ref|YP_001012766.1|	-	0.0014	17.6	0.0	0.0022	17.0	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_4	PF13147.1	gi|124027446|ref|YP_001012766.1|	-	0.003	17.6	5.2	0.017	15.1	3.6	2.2	1	1	0	1	1	1	1	Amidohydrolase
Creatininase	PF02633.9	gi|124027447|ref|YP_001012767.1|	-	2.2e-25	89.1	0.0	2.7e-25	88.8	0.0	1.1	1	0	0	1	1	1	1	Creatinine	amidohydrolase
RHH_1	PF01402.16	gi|124027448|ref|YP_001012768.1|	-	0.00016	21.4	2.9	0.00016	21.4	2.0	2.3	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
CcdA	PF07362.7	gi|124027448|ref|YP_001012768.1|	-	0.00089	19.0	0.4	0.0014	18.4	0.3	1.4	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
DUF217	PF02697.9	gi|124027448|ref|YP_001012768.1|	-	0.071	13.3	4.8	0.16	12.2	3.3	1.7	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
Death	PF00531.17	gi|124027448|ref|YP_001012768.1|	-	0.11	12.2	0.6	0.17	11.7	0.4	1.4	1	1	0	1	1	1	0	Death	domain
PSK_trans_fac	PF07704.6	gi|124027448|ref|YP_001012768.1|	-	0.11	13.1	1.1	0.15	12.7	0.7	1.4	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
UvrB	PF12344.3	gi|124027448|ref|YP_001012768.1|	-	0.11	11.9	0.1	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	Ultra-violet	resistance	protein	B
PIN	PF01850.16	gi|124027449|ref|YP_001012769.1|	-	0.012	15.9	2.5	0.013	15.8	1.7	1.0	1	0	0	1	1	1	0	PIN	domain
ThiF	PF00899.16	gi|124027450|ref|YP_001012770.1|	-	6.7e-46	155.4	0.3	1.6e-45	154.2	0.0	1.6	2	0	0	2	2	2	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|124027450|ref|YP_001012770.1|	-	5.3e-13	48.3	0.1	1.3e-12	47.1	0.0	1.6	1	0	0	1	1	1	1	MoeZ/MoeB	domain
UBACT	PF02134.16	gi|124027450|ref|YP_001012770.1|	-	0.069	12.7	0.2	0.12	11.9	0.1	1.4	1	0	0	1	1	1	0	Repeat	in	ubiquitin-activating	(UBA)	protein
UDPG_MGDP_dh_N	PF03721.9	gi|124027450|ref|YP_001012770.1|	-	0.16	11.3	1.0	1.2	8.4	0.1	2.3	3	0	0	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ThiI	PF02568.9	gi|124027451|ref|YP_001012771.1|	-	2.6e-47	160.8	0.0	6e-47	159.6	0.0	1.5	2	0	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.12	gi|124027451|ref|YP_001012771.1|	-	6.5e-16	58.5	1.0	8.2e-15	54.9	0.0	2.3	2	1	0	2	2	2	1	THUMP	domain
QueC	PF06508.8	gi|124027451|ref|YP_001012771.1|	-	1.8e-06	27.3	0.0	0.0011	18.3	0.0	2.4	2	0	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.15	gi|124027451|ref|YP_001012771.1|	-	0.019	14.4	0.0	0.068	12.6	0.0	1.9	1	1	0	1	1	1	0	PP-loop	family
ATP_bind_4	PF01902.12	gi|124027451|ref|YP_001012771.1|	-	0.033	13.5	0.0	0.1	11.9	0.0	1.9	1	0	0	1	1	1	0	ATP-binding	region
RPA_C	PF08784.6	gi|124027452|ref|YP_001012772.1|	-	3.8e-05	24.0	0.0	0.0001	22.6	0.0	1.6	2	0	0	2	2	2	1	Replication	protein	A	C	terminal
HTH_27	PF13463.1	gi|124027452|ref|YP_001012772.1|	-	0.00023	21.3	0.4	0.022	15.0	0.1	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|124027452|ref|YP_001012772.1|	-	0.00034	20.1	1.6	0.00034	20.1	1.1	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|124027452|ref|YP_001012772.1|	-	0.00045	19.8	0.4	0.0011	18.6	0.3	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|124027452|ref|YP_001012772.1|	-	0.0016	18.2	1.0	0.0047	16.6	0.7	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027452|ref|YP_001012772.1|	-	0.0038	16.5	0.4	0.0071	15.7	0.3	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|124027452|ref|YP_001012772.1|	-	0.004	16.5	1.6	0.0064	15.9	0.1	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.15	gi|124027452|ref|YP_001012772.1|	-	0.06	13.4	0.0	0.17	12.0	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
Proteasome	PF00227.21	gi|124027453|ref|YP_001012773.1|	-	1.4e-52	177.7	0.0	2e-52	177.2	0.0	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|124027453|ref|YP_001012773.1|	-	2.7e-15	55.3	0.3	1.5e-14	52.9	0.1	2.2	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
SBDS	PF01172.13	gi|124027454|ref|YP_001012774.1|	-	2.3e-24	85.0	0.0	3.5e-24	84.3	0.0	1.3	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.5	gi|124027454|ref|YP_001012774.1|	-	3.5e-21	75.1	0.3	5.1e-21	74.6	0.2	1.2	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
EFG_C	PF00679.19	gi|124027454|ref|YP_001012774.1|	-	0.04	13.7	0.0	0.093	12.6	0.0	1.5	1	0	0	1	1	1	0	Elongation	factor	G	C-terminus
DUF1949	PF09186.6	gi|124027454|ref|YP_001012774.1|	-	0.14	11.7	0.2	0.6	9.7	0.0	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1949)
KH_1	PF00013.24	gi|124027455|ref|YP_001012775.1|	-	1.8e-09	37.1	2.7	4.8e-09	35.7	1.8	1.8	1	1	0	1	1	1	1	KH	domain
KH_3	PF13014.1	gi|124027455|ref|YP_001012775.1|	-	3.3e-07	29.7	1.0	7.1e-07	28.7	0.1	2.1	2	0	0	2	2	2	1	KH	domain
KH_2	PF07650.12	gi|124027455|ref|YP_001012775.1|	-	4.5e-06	26.1	2.3	9.6e-06	25.0	1.6	1.6	1	0	0	1	1	1	1	KH	domain
S1	PF00575.18	gi|124027455|ref|YP_001012775.1|	-	0.0068	16.4	0.1	0.035	14.1	0.0	2.2	2	0	0	2	2	2	1	S1	RNA	binding	domain
RNase_PH	PF01138.16	gi|124027456|ref|YP_001012776.1|	-	2.7e-37	128.0	0.1	3.6e-37	127.6	0.0	1.2	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|124027456|ref|YP_001012776.1|	-	9.7e-17	60.6	0.4	1.9e-16	59.7	0.3	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.16	gi|124027457|ref|YP_001012777.1|	-	6.3e-31	107.4	0.0	1.1e-30	106.6	0.0	1.4	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|124027457|ref|YP_001012777.1|	-	1.1e-10	41.3	0.1	2.1e-10	40.3	0.1	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
Ribosomal_60s	PF00428.14	gi|124027457|ref|YP_001012777.1|	-	1.3	9.4	11.0	2.8	8.3	7.6	1.6	1	0	0	1	1	1	0	60s	Acidic	ribosomal	protein
Ribosomal_L37ae	PF01780.14	gi|124027458|ref|YP_001012778.1|	-	1.3e-31	108.2	2.4	1.4e-31	108.1	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.2	gi|124027458|ref|YP_001012778.1|	-	6.6e-05	22.6	2.3	9.8e-05	22.0	1.6	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|124027458|ref|YP_001012778.1|	-	0.00085	18.9	0.4	0.0011	18.5	0.3	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF1610	PF07754.6	gi|124027458|ref|YP_001012778.1|	-	0.0093	16.0	2.3	2.1	8.5	0.1	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.1	gi|124027458|ref|YP_001012778.1|	-	0.011	14.9	2.3	1.1	8.5	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124027458|ref|YP_001012778.1|	-	0.033	13.4	2.2	0.13	11.6	1.4	1.9	1	1	1	2	2	2	0	TFIIB	zinc-binding
Prim_Zn_Ribbon	PF08273.7	gi|124027458|ref|YP_001012778.1|	-	0.04	13.9	1.5	0.07	13.2	1.0	1.4	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
DUF4379	PF14311.1	gi|124027458|ref|YP_001012778.1|	-	0.043	13.6	4.8	2	8.2	0.3	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
zf-CCHC	PF00098.18	gi|124027458|ref|YP_001012778.1|	-	0.047	13.6	3.4	0.3	11.1	0.3	2.3	2	0	0	2	2	2	0	Zinc	knuckle
Lar_restr_allev	PF14354.1	gi|124027458|ref|YP_001012778.1|	-	0.049	13.9	3.2	0.12	12.7	2.2	1.6	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Rubredoxin	PF00301.15	gi|124027458|ref|YP_001012778.1|	-	0.056	13.3	0.8	7.9	6.4	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|124027458|ref|YP_001012778.1|	-	0.066	13.1	0.4	1.9	8.4	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ISL3	PF14690.1	gi|124027458|ref|YP_001012778.1|	-	0.15	12.0	1.3	7	6.7	0.2	2.4	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
A2L_zn_ribbon	PF08792.5	gi|124027458|ref|YP_001012778.1|	-	0.17	11.3	1.4	4.1	6.9	0.2	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
CpXC	PF14353.1	gi|124027458|ref|YP_001012778.1|	-	0.2	11.6	1.1	0.79	9.6	0.0	1.9	1	1	1	2	2	2	0	CpXC	protein
zf-tcix	PF14952.1	gi|124027458|ref|YP_001012778.1|	-	0.36	10.1	5.5	0.3	10.4	0.4	2.2	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RanBP	PF00641.13	gi|124027458|ref|YP_001012778.1|	-	0.45	9.6	3.7	0.3	10.2	0.4	2.0	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zinc_ribbon_2	PF13240.1	gi|124027458|ref|YP_001012778.1|	-	0.69	9.4	4.6	6.1	6.4	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124027458|ref|YP_001012778.1|	-	1.3	8.6	4.4	7.1	6.3	3.0	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124027458|ref|YP_001012778.1|	-	1.4	8.6	3.9	8.4	6.1	2.7	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|124027458|ref|YP_001012778.1|	-	1.7	9.0	5.4	4.4	7.7	0.6	2.6	2	1	1	3	3	3	0	Zinc-finger	double	domain
TFIIS_C	PF01096.13	gi|124027458|ref|YP_001012778.1|	-	4	7.1	5.3	3.6	7.3	0.5	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Brix	PF04427.13	gi|124027459|ref|YP_001012779.1|	-	1.1e-18	67.5	0.0	1.4e-18	67.2	0.0	1.1	1	0	0	1	1	1	1	Brix	domain
Prefoldin_2	PF01920.15	gi|124027460|ref|YP_001012780.1|	-	2.9e-17	62.3	16.4	3.3e-17	62.1	11.3	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin	PF02996.12	gi|124027460|ref|YP_001012780.1|	-	0.0094	15.6	12.6	0.012	15.2	2.8	2.3	1	1	1	2	2	2	1	Prefoldin	subunit
DNA_topoisoIV	PF00521.15	gi|124027460|ref|YP_001012780.1|	-	0.011	14.6	7.6	0.013	14.3	5.3	1.1	1	0	0	1	1	1	0	DNA	gyrase/topoisomerase	IV,	subunit	A
Tropomyosin	PF00261.15	gi|124027460|ref|YP_001012780.1|	-	0.014	14.4	17.9	0.069	12.2	1.5	2.0	1	1	1	2	2	2	0	Tropomyosin
NYD-SP28_assoc	PF14775.1	gi|124027460|ref|YP_001012780.1|	-	0.044	13.4	10.8	0.053	13.2	0.1	2.6	2	0	0	2	2	2	0	Sperm	tail	C-terminal	domain
Atg14	PF10186.4	gi|124027460|ref|YP_001012780.1|	-	0.049	12.5	8.7	0.062	12.2	6.0	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
AAA_13	PF13166.1	gi|124027460|ref|YP_001012780.1|	-	0.05	12.0	6.6	0.066	11.6	4.6	1.1	1	0	0	1	1	1	0	AAA	domain
THOC7	PF05615.8	gi|124027460|ref|YP_001012780.1|	-	0.055	13.7	14.6	0.24	11.6	10.1	1.8	1	1	0	1	1	1	0	Tho	complex	subunit	7
Stk19	PF10494.4	gi|124027460|ref|YP_001012780.1|	-	0.083	12.2	1.1	0.11	11.9	0.8	1.2	1	0	0	1	1	1	0	Serine-threonine	protein	kinase	19
Dynamitin	PF04912.9	gi|124027460|ref|YP_001012780.1|	-	0.095	11.4	6.7	0.12	11.1	4.7	1.1	1	0	0	1	1	1	0	Dynamitin
Nic96	PF04097.9	gi|124027460|ref|YP_001012780.1|	-	0.096	10.7	3.3	0.11	10.5	2.3	1.0	1	0	0	1	1	1	0	Nup93/Nic96
FlaC_arch	PF05377.6	gi|124027460|ref|YP_001012780.1|	-	0.17	11.8	11.7	0.13	12.1	2.1	2.6	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Init_tRNA_PT	PF04179.7	gi|124027460|ref|YP_001012780.1|	-	0.18	10.5	1.4	0.2	10.4	1.0	1.1	1	0	0	1	1	1	0	Initiator	tRNA	phosphoribosyl	transferase
Surfac_D-trimer	PF09006.6	gi|124027460|ref|YP_001012780.1|	-	0.21	11.3	12.0	3.6	7.3	0.1	3.2	3	0	0	3	3	3	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
PilJ	PF13675.1	gi|124027460|ref|YP_001012780.1|	-	0.22	11.8	8.5	0.25	11.6	3.0	2.1	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF948	PF06103.6	gi|124027460|ref|YP_001012780.1|	-	0.26	11.1	4.5	0.53	10.1	0.9	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
CENP-F_leu_zip	PF10473.4	gi|124027460|ref|YP_001012780.1|	-	0.27	11.1	17.5	1.2	8.9	6.2	2.1	1	1	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Fmp27_WPPW	PF10359.4	gi|124027460|ref|YP_001012780.1|	-	0.27	9.6	6.4	0.33	9.3	4.5	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
TPR_MLP1_2	PF07926.7	gi|124027460|ref|YP_001012780.1|	-	0.28	10.9	14.5	1.9	8.2	3.8	2.1	1	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
ABC1	PF03109.11	gi|124027460|ref|YP_001012780.1|	-	0.29	11.0	2.4	0.26	11.2	0.4	1.7	1	1	1	2	2	2	0	ABC1	family
DUF4559	PF15112.1	gi|124027460|ref|YP_001012780.1|	-	0.32	10.1	4.0	0.42	9.7	2.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
FlxA	PF14282.1	gi|124027460|ref|YP_001012780.1|	-	0.32	10.9	11.0	0.21	11.5	3.1	2.1	2	0	0	2	2	2	0	FlxA-like	protein
ADIP	PF11559.3	gi|124027460|ref|YP_001012780.1|	-	0.33	10.8	11.6	0.1	12.5	2.3	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
WXG100	PF06013.7	gi|124027460|ref|YP_001012780.1|	-	0.33	10.9	2.7	0.69	9.9	0.2	2.2	2	0	0	2	2	2	0	Proteins	of	100	residues	with	WXG
Tektin	PF03148.9	gi|124027460|ref|YP_001012780.1|	-	0.44	9.0	13.4	0.95	7.9	4.2	2.0	1	1	1	2	2	2	0	Tektin	family
Mnd1	PF03962.10	gi|124027460|ref|YP_001012780.1|	-	0.48	10.0	10.1	6.9	6.2	6.9	2.0	1	1	0	1	1	1	0	Mnd1	family
EAP30	PF04157.11	gi|124027460|ref|YP_001012780.1|	-	0.48	9.5	7.2	3.6	6.6	0.3	2.0	1	1	1	2	2	2	0	EAP30/Vps36	family
CDC37_N	PF03234.9	gi|124027460|ref|YP_001012780.1|	-	0.5	10.6	6.4	0.64	10.3	4.4	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
IncA	PF04156.9	gi|124027460|ref|YP_001012780.1|	-	0.54	9.8	18.1	2.4	7.7	12.5	1.8	1	1	0	1	1	1	0	IncA	protein
V_ATPase_I	PF01496.14	gi|124027460|ref|YP_001012780.1|	-	0.64	7.8	5.6	0.87	7.3	3.9	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Spc24	PF08286.6	gi|124027460|ref|YP_001012780.1|	-	0.65	9.7	13.4	0.43	10.2	3.5	2.3	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
DUF972	PF06156.8	gi|124027460|ref|YP_001012780.1|	-	0.65	10.3	12.4	2.1	8.7	2.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
NPV_P10	PF05531.7	gi|124027460|ref|YP_001012780.1|	-	0.66	10.2	6.8	0.2	11.8	1.5	2.2	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Viral_P18	PF04521.8	gi|124027460|ref|YP_001012780.1|	-	0.66	9.4	10.8	0.19	11.1	3.1	2.1	2	0	0	2	2	2	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
ALIX_LYPXL_bnd	PF13949.1	gi|124027460|ref|YP_001012780.1|	-	0.74	8.7	14.4	0.95	8.3	1.0	2.1	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
Tropomyosin_1	PF12718.2	gi|124027460|ref|YP_001012780.1|	-	0.77	9.6	16.0	13	5.6	11.2	1.9	1	1	0	1	1	1	0	Tropomyosin	like
GAS	PF13851.1	gi|124027460|ref|YP_001012780.1|	-	0.82	8.8	15.8	1.6	7.8	10.9	1.4	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Snapin_Pallidin	PF14712.1	gi|124027460|ref|YP_001012780.1|	-	0.84	9.9	13.9	0.33	11.2	4.5	2.1	1	1	1	2	2	2	0	Snapin/Pallidin
DUF4164	PF13747.1	gi|124027460|ref|YP_001012780.1|	-	0.89	9.7	15.6	0.51	10.5	5.8	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Syntaxin-6_N	PF09177.6	gi|124027460|ref|YP_001012780.1|	-	0.9	9.9	9.7	2.6	8.4	1.7	2.1	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DUF2968	PF11180.3	gi|124027460|ref|YP_001012780.1|	-	0.91	8.8	14.5	0.77	9.1	3.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2968)
DUF4140	PF13600.1	gi|124027460|ref|YP_001012780.1|	-	0.92	9.9	16.1	3.5	8.1	1.0	2.6	2	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Vir_act_alpha_C	PF10400.4	gi|124027460|ref|YP_001012780.1|	-	0.93	9.9	8.4	0.75	10.2	1.6	2.2	2	0	0	2	2	2	0	Virulence	activator	alpha	C-term
Nup54	PF13874.1	gi|124027460|ref|YP_001012780.1|	-	1.1	8.9	11.3	8.7	5.9	7.9	2.1	1	1	0	1	1	1	0	Nucleoporin	complex	subunit	54
DUF607	PF04678.8	gi|124027460|ref|YP_001012780.1|	-	1.2	9.0	6.0	0.72	9.7	2.7	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF607
DUF4404	PF14357.1	gi|124027460|ref|YP_001012780.1|	-	1.5	9.2	10.1	3.8	7.9	3.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
DUF1319	PF07028.6	gi|124027460|ref|YP_001012780.1|	-	1.8	8.7	11.8	0.43	10.7	4.9	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1319)
DUF342	PF03961.8	gi|124027460|ref|YP_001012780.1|	-	2.1	6.6	12.0	27	2.9	8.3	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
Baculo_PEP_C	PF04513.7	gi|124027460|ref|YP_001012780.1|	-	2.1	8.1	8.2	9.6	6.0	5.7	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Enkurin	PF13864.1	gi|124027460|ref|YP_001012780.1|	-	2.1	8.5	15.2	7.3	6.8	7.7	2.4	1	1	1	2	2	2	0	Calmodulin-binding
Nnf1	PF03980.9	gi|124027460|ref|YP_001012780.1|	-	2.3	8.2	10.0	2.6	8.0	1.3	2.4	2	0	0	2	2	2	0	Nnf1
DivIC	PF04977.10	gi|124027460|ref|YP_001012780.1|	-	2.5	7.6	18.5	1.9	8.0	4.8	2.7	2	1	1	3	3	3	0	Septum	formation	initiator
COG5	PF10392.4	gi|124027460|ref|YP_001012780.1|	-	2.8	7.9	7.1	1.2	9.1	1.8	2.1	1	1	0	2	2	2	0	Golgi	transport	complex	subunit	5
Vac_Fusion	PF02346.11	gi|124027460|ref|YP_001012780.1|	-	2.9	7.3	10.2	2.5	7.5	3.3	2.5	2	2	0	2	2	2	0	Chordopoxvirus	fusion	protein
DUF1978	PF09321.5	gi|124027460|ref|YP_001012780.1|	-	3.1	7.1	13.0	9	5.6	9.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1978)
DivIVA	PF05103.8	gi|124027460|ref|YP_001012780.1|	-	3.1	7.8	13.6	2.5	8.1	3.5	2.4	1	1	0	2	2	2	0	DivIVA	protein
DUF3186	PF11382.3	gi|124027460|ref|YP_001012780.1|	-	3.5	6.6	7.7	0.61	9.1	1.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3186)
Sas10_Utp3	PF04000.10	gi|124027460|ref|YP_001012780.1|	-	3.6	7.8	6.8	3	8.0	2.1	2.4	2	1	0	2	2	2	0	Sas10/Utp3/C1D	family
KxDL	PF10241.4	gi|124027460|ref|YP_001012780.1|	-	4	7.4	10.2	9.7	6.1	3.5	2.6	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
DUF4446	PF14584.1	gi|124027460|ref|YP_001012780.1|	-	4.4	7.1	8.1	5.7	6.7	1.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
DUF724	PF05266.9	gi|124027460|ref|YP_001012780.1|	-	4.6	6.8	13.0	12	5.4	9.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
APG6	PF04111.7	gi|124027460|ref|YP_001012780.1|	-	4.7	6.1	15.1	14	4.6	10.4	1.7	1	1	0	1	1	1	0	Autophagy	protein	Apg6
FemAB	PF02388.11	gi|124027460|ref|YP_001012780.1|	-	4.9	5.7	10.9	1.2	7.7	2.5	2.0	1	1	1	2	2	2	0	FemAB	family
Prp19	PF08606.6	gi|124027460|ref|YP_001012780.1|	-	4.9	6.9	8.9	4.4	7.1	0.1	2.5	2	1	0	2	2	2	0	Prp19/Pso4-like
DASH_Dad2	PF08654.5	gi|124027460|ref|YP_001012780.1|	-	5.2	7.1	8.1	7	6.6	2.2	2.4	1	1	1	2	2	2	0	DASH	complex	subunit	Dad2
TBPIP	PF07106.8	gi|124027460|ref|YP_001012780.1|	-	5.3	6.5	14.5	4.5	6.7	4.8	2.1	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Cortex-I_coil	PF09304.5	gi|124027460|ref|YP_001012780.1|	-	5.8	7.0	19.1	5.3	7.1	1.3	2.1	1	1	0	2	2	2	0	Cortexillin	I,	coiled	coil
CCDC32	PF14989.1	gi|124027460|ref|YP_001012780.1|	-	6	6.7	8.8	1.6	8.5	2.8	2.0	1	1	0	2	2	2	0	Coiled-coil	domain	containing	32
Spc7	PF08317.6	gi|124027460|ref|YP_001012780.1|	-	6.1	5.4	15.0	21	3.6	10.4	1.7	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Macoilin	PF09726.4	gi|124027460|ref|YP_001012780.1|	-	6.5	4.9	10.6	7.7	4.6	7.3	1.1	1	0	0	1	1	1	0	Transmembrane	protein
DUF1843	PF08898.5	gi|124027460|ref|YP_001012780.1|	-	6.7	6.8	11.4	4.3	7.4	2.8	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1843)
COG2	PF06148.6	gi|124027460|ref|YP_001012780.1|	-	7	6.5	9.2	10	6.0	1.4	2.1	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DASH_Dad3	PF08656.5	gi|124027460|ref|YP_001012780.1|	-	7.1	6.4	9.5	6.7	6.4	2.7	2.2	2	0	0	2	2	2	0	DASH	complex	subunit	Dad3
DUF4094	PF13334.1	gi|124027460|ref|YP_001012780.1|	-	7.1	7.0	6.6	13	6.2	0.8	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4094)
CorA	PF01544.13	gi|124027460|ref|YP_001012780.1|	-	7.8	5.4	7.0	10	5.0	4.8	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Syntaxin	PF00804.20	gi|124027460|ref|YP_001012780.1|	-	9	6.5	10.4	4.9	7.3	0.9	2.4	1	1	1	2	2	2	0	Syntaxin
Ribosomal_S30AE	PF02482.14	gi|124027461|ref|YP_001012781.1|	-	0.0053	17.1	0.0	0.0068	16.8	0.0	1.1	1	0	0	1	1	1	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
HPPK	PF01288.15	gi|124027461|ref|YP_001012781.1|	-	0.0073	16.0	0.2	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase	(HPPK)
GST_C_3	PF14497.1	gi|124027461|ref|YP_001012781.1|	-	0.12	12.9	0.1	0.69	10.4	0.1	1.9	1	1	1	2	2	2	0	Glutathione	S-transferase,	C-terminal	domain
Mst1_SARAH	PF11629.3	gi|124027461|ref|YP_001012781.1|	-	4.8	7.0	7.6	1.1	9.1	2.4	2.0	2	1	1	3	3	3	0	C	terminal	SARAH	domain	of	Mst1
DHH	PF01368.15	gi|124027462|ref|YP_001012782.1|	-	1.3e-16	60.5	0.0	2e-16	59.9	0.0	1.3	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|124027462|ref|YP_001012782.1|	-	1.1e-12	47.5	0.8	2.7e-12	46.1	0.6	1.8	1	0	0	1	1	1	1	DHHA1	domain
DUF218	PF02698.12	gi|124027462|ref|YP_001012782.1|	-	0.015	14.8	1.2	0.089	12.2	0.0	2.5	2	1	1	3	3	3	0	DUF218	domain
Oxidored_nitro	PF00148.14	gi|124027462|ref|YP_001012782.1|	-	0.022	13.4	1.2	0.21	10.1	0.2	2.1	2	0	0	2	2	2	0	Nitrogenase	component	1	type	Oxidoreductase
EAL	PF00563.15	gi|124027462|ref|YP_001012782.1|	-	0.087	12.2	0.2	0.46	9.9	0.0	2.2	2	1	1	3	3	3	0	EAL	domain
PhdYeFM_antitox	PF02604.14	gi|124027462|ref|YP_001012782.1|	-	0.18	11.3	2.9	0.73	9.4	0.0	3.3	4	0	0	4	4	4	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
zf-ribbon_3	PF13248.1	gi|124027464|ref|YP_001012784.1|	-	0.0001	21.4	3.4	0.00012	21.1	2.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027464|ref|YP_001012784.1|	-	0.00026	20.3	3.9	0.00034	19.9	2.7	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|124027464|ref|YP_001012784.1|	-	0.00047	19.9	1.2	0.00062	19.5	0.8	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
Ribosomal_L40e	PF01020.12	gi|124027464|ref|YP_001012784.1|	-	0.0012	18.4	5.7	0.0015	18.0	3.9	1.2	1	0	0	1	1	1	1	Ribosomal	L40e	family
zf-RanBP	PF00641.13	gi|124027464|ref|YP_001012784.1|	-	0.0036	16.3	3.7	0.0045	16.0	2.6	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DUF35_N	PF12172.3	gi|124027464|ref|YP_001012784.1|	-	0.03	14.2	0.7	0.49	10.3	0.7	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.14	gi|124027464|ref|YP_001012784.1|	-	0.059	13.0	0.3	0.068	12.8	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|124027464|ref|YP_001012784.1|	-	0.081	12.2	0.6	7.2	6.0	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-DHHC	PF01529.15	gi|124027464|ref|YP_001012784.1|	-	0.082	12.3	1.0	0.085	12.2	0.7	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
SCA7	PF08313.7	gi|124027464|ref|YP_001012784.1|	-	0.089	12.4	1.7	0.092	12.3	1.2	1.1	1	0	0	1	1	1	0	SCA7,	zinc-binding	domain
A2L_zn_ribbon	PF08792.5	gi|124027464|ref|YP_001012784.1|	-	0.26	10.7	1.2	1.5	8.3	0.0	2.0	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_6	PF14599.1	gi|124027464|ref|YP_001012784.1|	-	0.49	10.2	2.9	3.5	7.4	2.0	1.9	1	1	0	1	1	1	0	Zinc-ribbon
RNA_POL_M_15KD	PF02150.11	gi|124027464|ref|YP_001012784.1|	-	0.71	9.6	4.9	2.5	7.8	0.1	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-MYND	PF01753.13	gi|124027464|ref|YP_001012784.1|	-	1.5	8.7	6.1	2.1	8.2	4.2	1.2	1	0	0	1	1	1	0	MYND	finger
zf-IS66	PF13005.2	gi|124027464|ref|YP_001012784.1|	-	4.5	7.3	6.4	1.3	9.0	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-trcl	PF13451.1	gi|124027464|ref|YP_001012784.1|	-	8.4	6.1	7.6	14	5.4	0.1	2.1	2	0	0	2	2	2	0	Probable	zinc-binding	domain
MFS_1	PF07690.11	gi|124027465|ref|YP_001012785.1|	-	2.2e-06	26.6	45.0	2.2e-06	26.6	31.2	1.9	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
NurA	PF09376.5	gi|124027466|ref|YP_001012786.1|	-	8.4e-12	45.0	0.3	8.4e-12	45.0	0.2	1.6	2	0	0	2	2	2	1	NurA	domain
AAA_10	PF12846.2	gi|124027467|ref|YP_001012787.1|	-	1.5e-18	67.3	0.2	5.4e-17	62.1	0.1	2.2	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|124027467|ref|YP_001012787.1|	-	3.3e-15	56.5	0.0	5.2e-15	55.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|124027467|ref|YP_001012787.1|	-	3e-06	26.1	0.0	4.8e-06	25.4	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|124027467|ref|YP_001012787.1|	-	6.9e-05	22.4	0.0	0.0011	18.4	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
MobB	PF03205.9	gi|124027467|ref|YP_001012787.1|	-	0.00031	20.4	0.0	0.001	18.7	0.0	1.9	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|124027467|ref|YP_001012787.1|	-	0.0032	16.2	0.0	0.0065	15.2	0.0	1.4	1	0	0	1	1	1	1	ArgK	protein
AAA_22	PF13401.1	gi|124027467|ref|YP_001012787.1|	-	0.0058	16.7	0.0	0.54	10.4	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124027467|ref|YP_001012787.1|	-	0.029	15.1	0.1	0.16	12.8	0.1	2.2	1	1	0	1	1	1	0	AAA	domain
DUF815	PF05673.8	gi|124027467|ref|YP_001012787.1|	-	0.06	12.2	0.0	0.099	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
DUF853	PF05872.7	gi|124027467|ref|YP_001012787.1|	-	0.093	11.0	0.0	0.16	10.2	0.0	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
AAA_30	PF13604.1	gi|124027467|ref|YP_001012787.1|	-	0.13	11.7	0.0	0.32	10.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|124027467|ref|YP_001012787.1|	-	0.14	11.9	0.4	0.38	10.5	0.0	1.9	2	0	0	2	2	2	0	Part	of	AAA	domain
Ldh_2	PF02615.9	gi|124027467|ref|YP_001012787.1|	-	0.15	10.7	0.0	0.21	10.2	0.0	1.2	1	0	0	1	1	1	0	Malate/L-lactate	dehydrogenase
Arch_ATPase	PF01637.13	gi|124027467|ref|YP_001012787.1|	-	0.16	11.6	0.0	2.6	7.6	0.0	2.2	2	0	0	2	2	2	0	Archaeal	ATPase
RNA_helicase	PF00910.17	gi|124027467|ref|YP_001012787.1|	-	0.16	12.1	0.0	0.35	11.0	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Cons_hypoth95	PF03602.10	gi|124027468|ref|YP_001012788.1|	-	2.2e-13	49.9	0.0	3.6e-13	49.2	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltrans_SAM	PF10672.4	gi|124027468|ref|YP_001012788.1|	-	4e-13	48.8	0.0	5.5e-13	48.4	0.0	1.2	1	0	0	1	1	1	1	S-adenosylmethionine-dependent	methyltransferase
Methyltransf_26	PF13659.1	gi|124027468|ref|YP_001012788.1|	-	7.3e-10	38.9	0.1	2.2e-09	37.3	0.0	1.8	2	1	0	2	2	2	1	Methyltransferase	domain
Met_10	PF02475.11	gi|124027468|ref|YP_001012788.1|	-	7.5e-07	28.9	0.5	1.6e-06	27.8	0.3	1.4	1	1	0	1	1	1	1	Met-10+	like-protein
MTS	PF05175.9	gi|124027468|ref|YP_001012788.1|	-	3.4e-06	26.5	0.0	5.3e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_16	PF10294.4	gi|124027468|ref|YP_001012788.1|	-	0.0034	16.8	0.0	0.0058	16.0	0.0	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
TRM	PF02005.11	gi|124027468|ref|YP_001012788.1|	-	0.0076	15.2	0.0	0.0098	14.8	0.0	1.1	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
PrmA	PF06325.8	gi|124027468|ref|YP_001012788.1|	-	0.024	13.7	0.0	0.037	13.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DNA_methylase	PF00145.12	gi|124027468|ref|YP_001012788.1|	-	0.024	13.7	0.0	0.034	13.2	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
Methyltransf_15	PF09445.5	gi|124027468|ref|YP_001012788.1|	-	0.084	12.4	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Sm_multidrug_ex	PF06695.6	gi|124027469|ref|YP_001012789.1|	-	1.6e-25	89.6	4.2	2.2e-25	89.1	2.9	1.2	1	0	0	1	1	1	1	Putative	small	multi-drug	export	protein
IlvB_leader	PF08049.6	gi|124027469|ref|YP_001012789.1|	-	0.1	12.3	1.7	0.29	10.9	1.2	1.8	1	0	0	1	1	1	0	IlvB	leader	peptide
Adeno_PX	PF05829.7	gi|124027469|ref|YP_001012789.1|	-	1.3	8.6	6.1	3.1	7.3	1.9	2.5	2	0	0	2	2	2	0	Adenovirus	late	L2	mu	core	protein	(Protein	X)
OGG_N	PF07934.7	gi|124027470|ref|YP_001012790.1|	-	0.027	14.4	0.0	0.05	13.5	0.0	1.3	1	0	0	1	1	1	0	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
AIM24	PF01987.12	gi|124027471|ref|YP_001012791.1|	-	6.1e-57	192.5	0.0	6.9e-57	192.3	0.0	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
KaiC	PF06745.8	gi|124027472|ref|YP_001012792.1|	-	3e-29	101.7	0.0	3.8e-29	101.4	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|124027472|ref|YP_001012792.1|	-	1.8e-11	43.7	0.0	3.3e-11	42.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|124027472|ref|YP_001012792.1|	-	0.00084	18.7	0.0	0.0011	18.4	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_5	PF07728.9	gi|124027472|ref|YP_001012792.1|	-	0.0024	17.5	0.0	0.0034	17.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Elong_Iki1	PF10483.4	gi|124027472|ref|YP_001012792.1|	-	0.0025	17.2	0.0	0.0043	16.4	0.0	1.5	1	1	0	1	1	1	1	Elongator	subunit	Iki1
RNA_helicase	PF00910.17	gi|124027472|ref|YP_001012792.1|	-	0.0025	17.9	0.0	0.004	17.3	0.0	1.3	1	0	0	1	1	1	1	RNA	helicase
IstB_IS21	PF01695.12	gi|124027472|ref|YP_001012792.1|	-	0.0028	17.0	0.0	0.0062	15.9	0.0	1.5	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_16	PF13191.1	gi|124027472|ref|YP_001012792.1|	-	0.0045	16.9	0.0	0.0075	16.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027472|ref|YP_001012792.1|	-	0.0064	16.6	0.0	0.043	13.9	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
TPP_enzyme_C	PF02775.16	gi|124027472|ref|YP_001012792.1|	-	0.0084	15.6	0.0	0.064	12.8	0.0	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
AAA_18	PF13238.1	gi|124027472|ref|YP_001012792.1|	-	0.0097	16.2	0.0	0.088	13.1	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|124027472|ref|YP_001012792.1|	-	0.013	15.8	0.1	0.033	14.4	0.1	1.4	1	1	0	1	1	1	0	ABC	transporter
AAA_10	PF12846.2	gi|124027472|ref|YP_001012792.1|	-	0.013	14.9	0.1	0.016	14.6	0.1	1.4	1	1	0	1	1	1	0	AAA-like	domain
Sigma54_activat	PF00158.21	gi|124027472|ref|YP_001012792.1|	-	0.018	14.5	0.0	0.033	13.6	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
PhoH	PF02562.11	gi|124027472|ref|YP_001012792.1|	-	0.02	14.1	0.0	0.036	13.3	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
PAXNEB	PF05625.6	gi|124027472|ref|YP_001012792.1|	-	0.036	12.9	0.2	0.43	9.3	0.0	2.0	2	0	0	2	2	2	0	PAXNEB	protein
KTI12	PF08433.5	gi|124027472|ref|YP_001012792.1|	-	0.041	13.0	0.0	1.2	8.2	0.0	2.1	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_33	PF13671.1	gi|124027472|ref|YP_001012792.1|	-	0.055	13.3	0.1	0.19	11.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|124027472|ref|YP_001012792.1|	-	0.12	11.4	0.0	0.23	10.5	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_31	PF13614.1	gi|124027472|ref|YP_001012792.1|	-	0.13	12.1	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|124027472|ref|YP_001012792.1|	-	0.14	12.0	0.0	0.26	11.1	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|124027472|ref|YP_001012792.1|	-	0.14	10.7	0.0	0.71	8.4	0.0	1.9	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Cation_efflux	PF01545.16	gi|124027473|ref|YP_001012793.1|	-	1.1e-26	93.5	13.4	1.3e-26	93.3	9.3	1.1	1	0	0	1	1	1	1	Cation	efflux	family
MARVEL	PF01284.18	gi|124027473|ref|YP_001012793.1|	-	1.1	9.1	9.2	3.1	7.6	6.3	1.7	1	1	0	1	1	1	0	Membrane-associating	domain
4HBT	PF03061.17	gi|124027475|ref|YP_001012795.1|	-	2.6e-12	46.6	1.8	1.3e-06	28.4	0.2	2.3	2	0	0	2	2	2	2	Thioesterase	superfamily
ATP_bind_3	PF01171.15	gi|124027476|ref|YP_001012796.1|	-	3.4e-15	56.0	0.0	4.4e-13	49.1	0.0	3.0	2	1	0	2	2	2	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|124027476|ref|YP_001012796.1|	-	0.018	13.5	0.0	0.025	13.1	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyl	transferase
PAPS_reduct	PF01507.14	gi|124027476|ref|YP_001012796.1|	-	0.032	14.0	0.0	0.098	12.4	0.0	1.8	2	0	0	2	2	2	0	Phosphoadenosine	phosphosulfate	reductase	family
ThiS	PF02597.15	gi|124027477|ref|YP_001012797.1|	-	9.7e-07	29.1	1.2	1.2e-06	28.8	0.8	1.1	1	0	0	1	1	1	1	ThiS	family
Ub-RnfH	PF03658.9	gi|124027477|ref|YP_001012797.1|	-	0.049	13.5	0.1	0.51	10.2	0.1	2.0	1	1	0	1	1	1	0	RnfH	family	Ubiquitin
SLBB	PF10531.4	gi|124027477|ref|YP_001012797.1|	-	0.067	13.0	0.1	0.093	12.6	0.0	1.4	1	0	0	1	1	1	0	SLBB	domain
Cdc6_C	PF09079.6	gi|124027479|ref|YP_001012799.1|	-	5.2e-24	83.7	1.6	2.2e-23	81.8	0.1	2.5	3	0	0	3	3	3	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|124027479|ref|YP_001012799.1|	-	2.8e-12	46.9	3.1	1.4e-10	41.4	0.1	3.1	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027479|ref|YP_001012799.1|	-	1.2e-10	41.6	0.0	3.7e-10	40.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124027479|ref|YP_001012799.1|	-	5.6e-06	26.5	0.0	0.00061	20.0	0.0	2.6	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|124027479|ref|YP_001012799.1|	-	5.2e-05	23.0	0.0	0.00018	21.2	0.0	1.9	1	1	0	1	1	1	1	Archaeal	ATPase
DUF2075	PF09848.4	gi|124027479|ref|YP_001012799.1|	-	0.001	18.1	0.0	0.0014	17.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.17	gi|124027479|ref|YP_001012799.1|	-	0.0032	16.3	0.0	0.0053	15.6	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_32	PF13654.1	gi|124027479|ref|YP_001012799.1|	-	0.004	15.8	0.6	0.5	8.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|124027479|ref|YP_001012799.1|	-	0.0092	15.7	0.0	0.044	13.5	0.0	2.2	1	0	0	1	1	1	1	Part	of	AAA	domain
PIF1	PF05970.9	gi|124027479|ref|YP_001012799.1|	-	0.018	14.0	0.0	0.033	13.1	0.0	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
DEAD	PF00270.24	gi|124027479|ref|YP_001012799.1|	-	0.043	13.3	0.1	4.9	6.6	0.0	2.4	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
Kinesin	PF00225.18	gi|124027479|ref|YP_001012799.1|	-	0.065	11.9	0.0	0.11	11.2	0.0	1.2	1	0	0	1	1	1	0	Kinesin	motor	domain
TIP49	PF06068.8	gi|124027479|ref|YP_001012799.1|	-	0.072	11.8	0.0	3	6.4	0.0	2.2	2	0	0	2	2	2	0	TIP49	C-terminus
Bac_DnaA	PF00308.13	gi|124027479|ref|YP_001012799.1|	-	0.12	12.0	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	dnaA	protein
ORC5_C	PF14630.1	gi|124027479|ref|YP_001012799.1|	-	0.14	11.5	0.0	9.8	5.5	0.0	2.2	1	1	1	2	2	2	0	Origin	recognition	complex	(ORC)	subunit	5	C-terminus
AAA_25	PF13481.1	gi|124027479|ref|YP_001012799.1|	-	2.7	7.3	8.3	11	5.3	0.5	3.6	3	1	0	3	3	3	0	AAA	domain
HAD_2	PF13419.1	gi|124027480|ref|YP_001012800.1|	-	3.8e-17	63.0	0.0	4.8e-17	62.7	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|124027480|ref|YP_001012800.1|	-	3.3e-07	29.9	0.0	6.4e-07	28.9	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|124027480|ref|YP_001012800.1|	-	1.1e-05	25.9	0.1	2.1e-05	25.0	0.0	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
RNA_pol_Rpb6	PF01192.17	gi|124027480|ref|YP_001012800.1|	-	0.12	12.0	0.1	0.24	11.1	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	Rpb6
UPF0066	PF01980.11	gi|124027481|ref|YP_001012801.1|	-	4.2e-38	129.9	0.0	6.7e-38	129.3	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
Prefoldin_2	PF01920.15	gi|124027482|ref|YP_001012802.1|	-	0.00047	19.8	6.2	0.00047	19.8	4.3	1.6	2	0	0	2	2	1	1	Prefoldin	subunit
NTR2	PF15458.1	gi|124027482|ref|YP_001012802.1|	-	0.0022	17.2	0.8	0.0025	17.1	0.5	1.1	1	0	0	1	1	1	1	Nineteen	complex-related	protein	2
Tektin	PF03148.9	gi|124027482|ref|YP_001012802.1|	-	0.015	13.8	3.3	0.018	13.5	2.3	1.1	1	0	0	1	1	1	0	Tektin	family
DUF2205	PF10224.4	gi|124027482|ref|YP_001012802.1|	-	0.02	14.4	3.5	0.029	13.9	2.5	1.1	1	0	0	1	1	1	0	Predicted	coiled-coil	protein	(DUF2205)
DinB_2	PF12867.2	gi|124027482|ref|YP_001012802.1|	-	0.026	14.8	0.2	0.039	14.3	0.1	1.3	1	0	0	1	1	1	0	DinB	superfamily
DUF342	PF03961.8	gi|124027482|ref|YP_001012802.1|	-	0.063	11.6	1.0	0.079	11.3	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
ATG16	PF08614.6	gi|124027482|ref|YP_001012802.1|	-	0.067	13.0	5.5	0.11	12.2	3.8	1.4	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
End3	PF12761.2	gi|124027482|ref|YP_001012802.1|	-	0.089	12.4	1.2	0.12	12.0	0.8	1.1	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
AAA_23	PF13476.1	gi|124027482|ref|YP_001012802.1|	-	0.11	12.8	0.5	0.11	12.7	0.3	1.1	1	0	0	1	1	1	0	AAA	domain
Prefoldin	PF02996.12	gi|124027482|ref|YP_001012802.1|	-	0.11	12.1	2.4	0.15	11.6	1.7	1.2	1	0	0	1	1	1	0	Prefoldin	subunit
Fib_alpha	PF08702.5	gi|124027482|ref|YP_001012802.1|	-	0.13	12.4	0.4	0.2	11.7	0.3	1.3	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
V_ATPase_I	PF01496.14	gi|124027482|ref|YP_001012802.1|	-	0.14	9.9	0.2	0.16	9.7	0.2	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
EMP24_GP25L	PF01105.19	gi|124027482|ref|YP_001012802.1|	-	0.16	11.6	1.7	0.2	11.3	1.2	1.1	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
DUF2312	PF10073.4	gi|124027482|ref|YP_001012802.1|	-	0.18	11.1	4.5	0.26	10.6	3.1	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
TPD52	PF04201.10	gi|124027482|ref|YP_001012802.1|	-	0.39	10.4	3.9	0.46	10.1	2.7	1.1	1	0	0	1	1	1	0	Tumour	protein	D52	family
TBPIP	PF07106.8	gi|124027482|ref|YP_001012802.1|	-	0.64	9.5	4.8	0.82	9.1	3.3	1.1	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
IncA	PF04156.9	gi|124027482|ref|YP_001012802.1|	-	0.95	9.0	11.0	0.22	11.0	5.0	1.4	1	1	0	1	1	1	0	IncA	protein
SMN	PF06003.7	gi|124027482|ref|YP_001012802.1|	-	1	8.4	7.7	1.1	8.3	5.3	1.2	1	0	0	1	1	1	0	Survival	motor	neuron	protein	(SMN)
Med9	PF07544.8	gi|124027482|ref|YP_001012802.1|	-	1.2	8.9	6.8	3.3	7.4	4.8	1.7	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
APG6	PF04111.7	gi|124027482|ref|YP_001012802.1|	-	1.4	7.8	5.2	2	7.4	3.6	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
DASH_Dad3	PF08656.5	gi|124027482|ref|YP_001012802.1|	-	2	8.1	7.1	0.072	12.8	0.8	1.6	2	0	0	2	2	2	0	DASH	complex	subunit	Dad3
Med21	PF11221.3	gi|124027482|ref|YP_001012802.1|	-	2.2	8.2	9.5	0.27	11.1	2.7	1.9	2	0	0	2	2	2	0	Subunit	21	of	Mediator	complex
CitMHS	PF03600.11	gi|124027483|ref|YP_001012803.1|	-	1.4e-24	86.3	26.4	2.1e-24	85.7	18.3	1.2	1	0	0	1	1	1	1	Citrate	transporter
FR47	PF08445.5	gi|124027484|ref|YP_001012804.1|	-	1.9e-15	56.3	0.0	2.9e-15	55.7	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_1	PF00583.19	gi|124027484|ref|YP_001012804.1|	-	2.4e-12	46.7	0.2	4.3e-12	45.8	0.2	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|124027484|ref|YP_001012804.1|	-	5.5e-08	32.9	0.1	7.8e-08	32.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|124027484|ref|YP_001012804.1|	-	1e-07	32.0	0.0	2e-07	31.0	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|124027484|ref|YP_001012804.1|	-	0.0015	18.4	0.0	0.0021	17.9	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|124027484|ref|YP_001012804.1|	-	0.0051	16.6	0.0	0.0098	15.7	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.1	gi|124027484|ref|YP_001012804.1|	-	0.0052	16.6	0.1	0.0085	15.9	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.2	gi|124027484|ref|YP_001012804.1|	-	0.0092	14.8	0.1	0.012	14.4	0.0	1.1	1	0	0	1	1	1	1	GNAT	acetyltransferase
Acetyltransf_3	PF13302.1	gi|124027484|ref|YP_001012804.1|	-	0.017	15.3	0.0	0.022	14.9	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
SfsA	PF03749.8	gi|124027485|ref|YP_001012805.1|	-	1.9e-48	164.7	0.0	2.3e-48	164.4	0.0	1.0	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein
DUF4257	PF14074.1	gi|124027486|ref|YP_001012806.1|	-	0.12	12.0	1.9	0.21	11.2	0.6	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4257)
YtpI	PF14007.1	gi|124027486|ref|YP_001012806.1|	-	0.15	12.0	1.7	0.15	12.0	0.5	1.6	1	1	0	1	1	1	0	YtpI-like	protein
CAAD	PF14159.1	gi|124027486|ref|YP_001012806.1|	-	8.2	6.1	6.6	2	8.1	2.1	2.0	1	1	0	2	2	2	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
CN_hydrolase	PF00795.17	gi|124027487|ref|YP_001012807.1|	-	7.5e-22	77.5	0.0	1e-21	77.1	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
ABC_tran	PF00005.22	gi|124027489|ref|YP_001012809.1|	-	1.1e-33	116.4	0.0	1.5e-33	116.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|124027489|ref|YP_001012809.1|	-	1.2e-20	73.5	1.2	4.5e-20	71.7	0.9	1.9	2	0	0	2	2	2	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|124027489|ref|YP_001012809.1|	-	6.2e-11	42.7	0.3	6.5e-07	29.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027489|ref|YP_001012809.1|	-	9.6e-06	24.9	0.1	0.00022	20.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_18	PF13238.1	gi|124027489|ref|YP_001012809.1|	-	0.00022	21.5	0.0	0.0015	18.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|124027489|ref|YP_001012809.1|	-	0.0032	17.6	0.1	0.036	14.2	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124027489|ref|YP_001012809.1|	-	0.0045	17.1	0.0	0.034	14.3	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.1	gi|124027489|ref|YP_001012809.1|	-	0.0066	16.3	0.0	0.054	13.4	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.1	gi|124027489|ref|YP_001012809.1|	-	0.0077	15.7	0.0	0.013	14.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|124027489|ref|YP_001012809.1|	-	0.011	14.8	0.1	0.36	9.8	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_16	PF13191.1	gi|124027489|ref|YP_001012809.1|	-	0.016	15.2	0.1	0.025	14.5	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|124027489|ref|YP_001012809.1|	-	0.019	15.8	0.1	0.035	14.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|124027489|ref|YP_001012809.1|	-	0.037	13.7	0.0	0.24	11.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
PRK	PF00485.13	gi|124027489|ref|YP_001012809.1|	-	0.045	13.3	0.0	0.08	12.4	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Sigma54_activat	PF00158.21	gi|124027489|ref|YP_001012809.1|	-	0.054	12.9	0.0	1.4	8.3	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
KaiC	PF06745.8	gi|124027489|ref|YP_001012809.1|	-	0.067	12.3	0.4	0.27	10.3	0.1	1.9	2	0	0	2	2	2	0	KaiC
AAA_25	PF13481.1	gi|124027489|ref|YP_001012809.1|	-	0.13	11.6	0.0	0.28	10.5	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|124027489|ref|YP_001012809.1|	-	0.25	9.7	0.0	9.9	4.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|124027490|ref|YP_001012810.1|	-	3.8e-25	88.7	0.0	5.1e-25	88.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|124027490|ref|YP_001012810.1|	-	8.3e-23	80.5	1.0	1.6e-22	79.6	0.7	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|124027490|ref|YP_001012810.1|	-	5.5e-11	42.9	0.0	7e-10	39.3	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|124027490|ref|YP_001012810.1|	-	0.0013	18.1	0.0	1.2	8.5	0.0	2.1	1	1	1	2	2	2	2	AAA-like	domain
SMC_N	PF02463.14	gi|124027490|ref|YP_001012810.1|	-	0.002	17.3	0.0	0.03	13.5	0.0	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|124027490|ref|YP_001012810.1|	-	0.0034	17.5	1.1	0.061	13.4	0.7	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|124027490|ref|YP_001012810.1|	-	0.0054	16.7	0.0	0.01	15.8	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|124027490|ref|YP_001012810.1|	-	0.0095	15.0	0.0	0.015	14.3	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
ATP-synt_ab	PF00006.20	gi|124027490|ref|YP_001012810.1|	-	0.011	15.2	0.0	0.016	14.7	0.0	1.5	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.1	gi|124027490|ref|YP_001012810.1|	-	0.012	15.0	0.0	0.023	14.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AP_endonuc_2_N	PF07582.7	gi|124027490|ref|YP_001012810.1|	-	0.013	15.0	0.0	0.027	14.0	0.0	1.5	1	0	0	1	1	1	0	AP	endonuclease	family	2	C	terminus
RNA_helicase	PF00910.17	gi|124027490|ref|YP_001012810.1|	-	0.037	14.1	0.0	0.099	12.8	0.0	1.7	2	0	0	2	2	2	0	RNA	helicase
AAA_5	PF07728.9	gi|124027490|ref|YP_001012810.1|	-	0.059	13.0	0.0	0.13	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|124027490|ref|YP_001012810.1|	-	0.07	12.5	0.1	2.2	7.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|124027490|ref|YP_001012810.1|	-	0.15	12.2	0.1	1.1	9.5	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
BPD_transp_1	PF00528.17	gi|124027491|ref|YP_001012811.1|	-	2.3e-29	102.2	14.0	2.3e-29	102.2	9.7	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|124027491|ref|YP_001012811.1|	-	2.1e-07	30.1	1.1	5.5e-07	28.8	0.0	2.3	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.17	gi|124027492|ref|YP_001012812.1|	-	2.8e-38	131.2	21.5	2.8e-38	131.2	14.9	1.8	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.17	gi|124027493|ref|YP_001012813.1|	-	4.5e-70	236.3	6.3	4.5e-70	236.3	4.4	1.8	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Usp	PF00582.21	gi|124027494|ref|YP_001012814.1|	-	4.3e-37	127.4	3.7	2.8e-22	79.4	0.2	2.2	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF724	PF05266.9	gi|124027494|ref|YP_001012814.1|	-	0.19	11.3	0.0	0.29	10.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
PNP_UDP_1	PF01048.15	gi|124027495|ref|YP_001012815.1|	-	3.3e-09	36.0	0.0	4e-09	35.7	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Helicase_RecD	PF05127.9	gi|124027496|ref|YP_001012816.1|	-	4.1e-41	140.5	0.0	6.7e-41	139.8	0.0	1.3	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.1	gi|124027496|ref|YP_001012816.1|	-	6.7e-18	64.7	1.9	1.3e-14	53.9	1.3	3.1	1	1	0	1	1	1	1	GNAT	acetyltransferase	2
Acetyltransf_1	PF00583.19	gi|124027496|ref|YP_001012816.1|	-	6.1e-10	38.9	0.1	2.3e-09	37.1	0.1	2.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|124027496|ref|YP_001012816.1|	-	4.5e-07	29.9	0.0	2.2e-06	27.7	0.0	2.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF1726	PF08351.6	gi|124027496|ref|YP_001012816.1|	-	2.5e-06	27.0	0.0	6.1e-06	25.8	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_10	PF13673.1	gi|124027496|ref|YP_001012816.1|	-	9.7e-05	22.4	0.2	0.00098	19.2	0.0	2.7	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|124027496|ref|YP_001012816.1|	-	0.00054	19.8	0.0	0.0014	18.5	0.0	1.7	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
AAA_30	PF13604.1	gi|124027496|ref|YP_001012816.1|	-	0.00082	19.0	0.0	0.0023	17.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Sigma70_r4_2	PF08281.7	gi|124027496|ref|YP_001012816.1|	-	0.0015	17.9	0.1	0.0039	16.6	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
tRNA_bind_2	PF13725.1	gi|124027496|ref|YP_001012816.1|	-	0.0034	17.4	0.1	0.0062	16.6	0.0	1.4	1	0	0	1	1	1	1	Possible	tRNA	binding	domain
Acetyltransf_CG	PF14542.1	gi|124027496|ref|YP_001012816.1|	-	0.0062	16.3	0.1	0.013	15.3	0.1	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Sigma70_r4	PF04545.11	gi|124027496|ref|YP_001012816.1|	-	0.0073	15.5	0.2	0.02	14.1	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
FR47	PF08445.5	gi|124027496|ref|YP_001012816.1|	-	0.019	14.6	0.0	0.054	13.2	0.0	1.7	1	0	0	1	1	1	0	FR47-like	protein
AAA_16	PF13191.1	gi|124027496|ref|YP_001012816.1|	-	0.031	14.2	0.1	0.031	14.2	0.1	2.8	2	1	1	3	3	3	0	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027496|ref|YP_001012816.1|	-	0.056	13.5	0.1	0.76	9.9	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
ABC_tran	PF00005.22	gi|124027497|ref|YP_001012817.1|	-	1.2e-33	116.3	0.0	1.6e-33	115.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027497|ref|YP_001012817.1|	-	1.5e-15	57.9	0.2	2.6e-13	50.6	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|124027497|ref|YP_001012817.1|	-	7.3e-07	28.6	0.2	0.00081	18.6	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|124027497|ref|YP_001012817.1|	-	3.3e-06	26.7	1.6	0.00051	19.5	0.2	2.3	1	1	0	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|124027497|ref|YP_001012817.1|	-	5.1e-06	26.6	0.5	0.0001	22.3	0.3	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|124027497|ref|YP_001012817.1|	-	4.9e-05	22.5	0.0	0.05	12.6	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|124027497|ref|YP_001012817.1|	-	9.8e-05	22.7	0.3	0.00017	21.9	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.4	gi|124027497|ref|YP_001012817.1|	-	0.00011	20.9	0.4	0.29	9.6	0.2	2.3	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_29	PF13555.1	gi|124027497|ref|YP_001012817.1|	-	0.00021	20.7	0.1	0.00043	19.7	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|124027497|ref|YP_001012817.1|	-	0.00024	21.2	0.4	0.0071	16.4	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
Dynamin_N	PF00350.18	gi|124027497|ref|YP_001012817.1|	-	0.0013	18.6	0.0	0.0022	17.8	0.0	1.5	1	1	0	1	1	1	1	Dynamin	family
AAA_33	PF13671.1	gi|124027497|ref|YP_001012817.1|	-	0.0014	18.5	0.3	0.0067	16.3	0.2	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027497|ref|YP_001012817.1|	-	0.002	18.9	0.0	0.0039	17.9	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|124027497|ref|YP_001012817.1|	-	0.0026	17.2	0.2	0.0074	15.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|124027497|ref|YP_001012817.1|	-	0.0051	16.6	0.2	0.087	12.7	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|124027497|ref|YP_001012817.1|	-	0.0069	16.0	0.1	0.014	15.0	0.1	1.5	1	0	0	1	1	1	1	NACHT	domain
MobB	PF03205.9	gi|124027497|ref|YP_001012817.1|	-	0.012	15.3	0.1	0.023	14.4	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SbcCD_C	PF13558.1	gi|124027497|ref|YP_001012817.1|	-	0.025	14.4	0.1	0.23	11.3	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Arch_ATPase	PF01637.13	gi|124027497|ref|YP_001012817.1|	-	0.028	14.1	0.4	0.082	12.5	0.1	1.8	2	1	0	2	2	2	0	Archaeal	ATPase
AAA_13	PF13166.1	gi|124027497|ref|YP_001012817.1|	-	0.031	12.7	0.3	2.9	6.2	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|124027497|ref|YP_001012817.1|	-	0.032	13.1	0.1	0.061	12.1	0.1	1.4	1	0	0	1	1	1	0	NB-ARC	domain
MutS_V	PF00488.16	gi|124027497|ref|YP_001012817.1|	-	0.033	13.6	0.0	0.26	10.6	0.0	1.9	2	0	0	2	2	2	0	MutS	domain	V
AAA_18	PF13238.1	gi|124027497|ref|YP_001012817.1|	-	0.039	14.2	0.5	0.86	9.9	0.4	2.5	2	1	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|124027497|ref|YP_001012817.1|	-	0.04	13.8	0.2	0.13	12.2	0.1	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.1	gi|124027497|ref|YP_001012817.1|	-	0.065	12.7	0.2	0.35	10.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|124027497|ref|YP_001012817.1|	-	0.07	12.5	0.1	0.12	11.8	0.1	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
T2SE	PF00437.15	gi|124027497|ref|YP_001012817.1|	-	0.081	11.8	0.2	0.16	10.8	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF258	PF03193.11	gi|124027497|ref|YP_001012817.1|	-	0.09	11.9	0.2	0.16	11.1	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|124027497|ref|YP_001012817.1|	-	0.096	13.1	0.0	0.17	12.4	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA	PF00004.24	gi|124027497|ref|YP_001012817.1|	-	0.098	12.8	0.1	1.1	9.4	0.1	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|124027497|ref|YP_001012817.1|	-	0.14	11.6	0.2	0.26	10.6	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_35	PF14516.1	gi|124027497|ref|YP_001012817.1|	-	0.15	10.6	0.1	0.82	8.2	0.0	1.9	2	0	0	2	2	2	0	AAA-like	domain
AAA_24	PF13479.1	gi|124027497|ref|YP_001012817.1|	-	0.21	11.1	0.3	0.39	10.2	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|124027497|ref|YP_001012817.1|	-	0.21	11.3	3.6	0.93	9.2	0.2	2.7	2	1	0	2	2	2	0	Part	of	AAA	domain
ABC_tran	PF00005.22	gi|124027498|ref|YP_001012818.1|	-	2.6e-28	99.0	0.0	3.3e-28	98.7	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027498|ref|YP_001012818.1|	-	1.3e-13	51.5	0.6	1.1e-11	45.1	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|124027498|ref|YP_001012818.1|	-	1.4e-06	27.8	0.4	2.7e-06	26.9	0.3	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.14	gi|124027498|ref|YP_001012818.1|	-	0.00039	19.7	0.0	0.16	11.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|124027498|ref|YP_001012818.1|	-	0.0007	19.9	0.0	0.0011	19.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027498|ref|YP_001012818.1|	-	0.001	18.5	0.0	0.0016	17.8	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|124027498|ref|YP_001012818.1|	-	0.0019	18.3	0.0	0.0088	16.1	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027498|ref|YP_001012818.1|	-	0.0029	17.3	0.1	0.0072	16.0	0.1	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|124027498|ref|YP_001012818.1|	-	0.0067	15.8	0.0	1.1	8.6	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
T2SE	PF00437.15	gi|124027498|ref|YP_001012818.1|	-	0.011	14.6	0.0	0.017	14.0	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|124027498|ref|YP_001012818.1|	-	0.017	15.1	0.3	0.053	13.5	0.2	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|124027498|ref|YP_001012818.1|	-	0.023	15.4	1.3	0.057	14.2	0.3	2.1	2	1	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.4	gi|124027498|ref|YP_001012818.1|	-	0.032	12.8	0.3	1.2	7.6	0.0	2.6	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
SRP54	PF00448.17	gi|124027498|ref|YP_001012818.1|	-	0.051	13.0	0.0	0.082	12.3	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA	PF00004.24	gi|124027498|ref|YP_001012818.1|	-	0.075	13.2	0.0	0.22	11.6	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|124027498|ref|YP_001012818.1|	-	0.081	12.6	0.1	0.22	11.1	0.0	1.6	1	1	0	2	2	2	0	Archaeal	ATPase
MobB	PF03205.9	gi|124027498|ref|YP_001012818.1|	-	0.098	12.3	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|124027498|ref|YP_001012818.1|	-	0.1	12.1	0.0	0.24	10.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|124027498|ref|YP_001012818.1|	-	0.11	11.4	0.0	5.3	5.9	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
NB-ARC	PF00931.17	gi|124027498|ref|YP_001012818.1|	-	0.11	11.3	0.0	0.21	10.4	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_10	PF12846.2	gi|124027498|ref|YP_001012818.1|	-	0.11	11.8	0.2	2.6	7.3	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
AAA_14	PF13173.1	gi|124027498|ref|YP_001012818.1|	-	0.12	12.3	0.0	0.33	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|124027498|ref|YP_001012818.1|	-	0.15	11.9	0.1	0.36	10.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|124027498|ref|YP_001012818.1|	-	0.16	11.6	0.2	1	9.0	0.1	2.1	1	1	1	2	2	2	0	NACHT	domain
Peripla_BP_6	PF13458.1	gi|124027499|ref|YP_001012819.1|	-	6.7e-36	124.3	0.1	8.8e-36	123.9	0.1	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|124027499|ref|YP_001012819.1|	-	1.3e-34	119.5	0.0	1.8e-34	119.0	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|124027499|ref|YP_001012819.1|	-	2.6e-11	42.9	0.0	4e-11	42.2	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
LppC	PF04348.8	gi|124027499|ref|YP_001012819.1|	-	5.5e-05	21.9	0.1	0.00038	19.1	0.0	1.9	2	0	0	2	2	2	1	LppC	putative	lipoprotein
YjeF_N	PF03853.10	gi|124027499|ref|YP_001012819.1|	-	0.085	12.4	0.1	0.2	11.2	0.0	1.7	2	0	0	2	2	2	0	YjeF-related	protein	N-terminus
CdhD	PF03599.11	gi|124027499|ref|YP_001012819.1|	-	0.11	10.9	0.0	0.21	10.0	0.0	1.4	1	0	0	1	1	1	0	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
Peptidase_M54	PF07998.6	gi|124027501|ref|YP_001012821.1|	-	1.6e-29	103.0	0.0	2e-29	102.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.19	gi|124027501|ref|YP_001012821.1|	-	0.00018	21.2	0.0	0.00019	21.1	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Peptidase_M66	PF10462.4	gi|124027501|ref|YP_001012821.1|	-	0.00034	19.5	0.0	0.00046	19.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	M66
Metallopep	PF12044.3	gi|124027501|ref|YP_001012821.1|	-	0.049	12.0	0.4	0.071	11.5	0.3	1.1	1	0	0	1	1	1	0	Putative	peptidase	family
Peptidase_M43	PF05572.8	gi|124027501|ref|YP_001012821.1|	-	0.13	11.8	0.0	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Reprolysin_2	PF13574.1	gi|124027501|ref|YP_001012821.1|	-	0.16	11.9	0.0	0.27	11.2	0.0	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
VPEP	PF07589.6	gi|124027503|ref|YP_001012822.1|	-	4.6	7.2	9.0	0.65	9.9	0.2	3.7	3	0	0	3	3	3	0	PEP-CTERM	motif
GM_CSF	PF01109.12	gi|124027502|ref|YP_001012823.1|	-	0.012	15.5	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	Granulocyte-macrophage	colony-stimulating	factor
Peptidase_M29	PF02073.10	gi|124027504|ref|YP_001012824.1|	-	5.2e-113	377.8	0.0	5.8e-113	377.6	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
PsbP	PF01789.11	gi|124027504|ref|YP_001012824.1|	-	0.0074	15.7	0.0	0.012	15.0	0.0	1.3	1	0	0	1	1	1	1	PsbP
DUF4388	PF14332.1	gi|124027504|ref|YP_001012824.1|	-	0.054	13.3	0.1	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4388)
TrkA_N	PF02254.13	gi|124027505|ref|YP_001012825.1|	-	2.9e-19	69.1	0.2	6.6e-19	68.0	0.2	1.6	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.11	gi|124027505|ref|YP_001012825.1|	-	3.1e-15	55.6	13.0	3.2e-15	55.5	7.0	2.1	1	1	1	2	2	2	2	Ion	channel
TrkA_C	PF02080.16	gi|124027505|ref|YP_001012825.1|	-	1.3e-05	24.7	0.0	0.00012	21.6	0.0	2.3	2	0	0	2	2	2	1	TrkA-C	domain
Ion_trans	PF00520.26	gi|124027505|ref|YP_001012825.1|	-	1.6e-05	24.2	2.1	2.8e-05	23.4	1.4	1.4	1	1	0	1	1	1	1	Ion	transport	protein
DUF373	PF04123.8	gi|124027505|ref|YP_001012825.1|	-	0.073	12.0	2.6	0.089	11.7	0.9	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
DUF2139	PF09910.4	gi|124027506|ref|YP_001012826.1|	-	1.5e-167	556.8	0.1	1.9e-167	556.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2139)
DAO	PF01266.19	gi|124027507|ref|YP_001012827.1|	-	5.7e-67	226.1	3.8	6.5e-67	225.9	2.6	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|124027507|ref|YP_001012827.1|	-	3.8e-09	35.9	0.2	0.00012	21.0	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|124027507|ref|YP_001012827.1|	-	4.3e-07	29.8	2.4	5.7e-07	29.4	0.2	2.3	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|124027507|ref|YP_001012827.1|	-	5.8e-06	26.3	0.2	0.0034	17.2	0.1	2.6	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|124027507|ref|YP_001012827.1|	-	7.6e-06	25.1	0.0	0.00037	19.6	0.0	2.1	2	0	0	2	2	2	1	Thi4	family
Pyr_redox	PF00070.22	gi|124027507|ref|YP_001012827.1|	-	1e-05	25.8	0.1	0.0077	16.6	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|124027507|ref|YP_001012827.1|	-	3.1e-05	23.0	0.3	0.052	12.4	0.3	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.1	gi|124027507|ref|YP_001012827.1|	-	0.00021	21.1	0.2	0.0052	16.5	0.0	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|124027507|ref|YP_001012827.1|	-	0.00032	20.8	0.0	0.023	14.7	0.0	2.7	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
GMC_oxred_N	PF00732.14	gi|124027507|ref|YP_001012827.1|	-	0.00032	19.9	0.1	0.0045	16.1	0.0	2.0	2	0	0	2	2	2	1	GMC	oxidoreductase
FAD_oxidored	PF12831.2	gi|124027507|ref|YP_001012827.1|	-	0.00056	19.0	0.3	0.0021	17.1	0.2	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|124027507|ref|YP_001012827.1|	-	0.0015	17.6	0.2	0.0028	16.7	0.2	1.4	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|124027507|ref|YP_001012827.1|	-	0.0018	16.8	0.2	0.69	8.3	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|124027507|ref|YP_001012827.1|	-	0.0054	15.7	0.2	0.034	13.0	0.0	2.1	3	0	0	3	3	3	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|124027507|ref|YP_001012827.1|	-	0.016	13.8	0.7	0.42	9.1	0.1	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Amino_oxidase	PF01593.19	gi|124027507|ref|YP_001012827.1|	-	0.022	13.8	0.3	3	6.8	0.0	2.2	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|124027507|ref|YP_001012827.1|	-	0.097	12.3	0.1	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ThiF	PF00899.16	gi|124027507|ref|YP_001012827.1|	-	0.12	12.1	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	ThiF	family
Pyr_redox	PF00070.22	gi|124027508|ref|YP_001012828.1|	-	1.1e-11	44.9	6.6	6.1e-06	26.5	0.2	3.2	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|124027508|ref|YP_001012828.1|	-	2.1e-07	30.8	10.6	1.8e-05	24.6	1.8	4.1	3	1	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|124027508|ref|YP_001012828.1|	-	7.4e-07	29.2	6.5	0.00029	20.7	1.8	2.3	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027508|ref|YP_001012828.1|	-	8e-07	29.3	1.9	0.027	14.5	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|124027508|ref|YP_001012828.1|	-	1.8e-05	24.0	6.6	1.8e-05	24.0	4.6	1.4	2	0	0	2	2	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|124027508|ref|YP_001012828.1|	-	5.3e-05	21.8	5.1	0.0011	17.5	1.7	2.3	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|124027508|ref|YP_001012828.1|	-	7.3e-05	21.7	6.1	7.3e-05	21.7	4.3	2.0	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.12	gi|124027508|ref|YP_001012828.1|	-	8.6e-05	21.7	3.3	0.0023	17.0	0.6	2.2	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.17	gi|124027508|ref|YP_001012828.1|	-	0.00013	20.9	3.2	0.00013	20.9	2.2	2.1	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
DAO	PF01266.19	gi|124027508|ref|YP_001012828.1|	-	0.00015	20.7	12.5	0.0027	16.6	3.2	2.5	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Shikimate_DH	PF01488.15	gi|124027508|ref|YP_001012828.1|	-	0.00018	21.6	1.3	0.064	13.3	0.0	2.3	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|124027508|ref|YP_001012828.1|	-	0.00019	21.1	3.6	0.001	18.8	0.0	2.3	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|124027508|ref|YP_001012828.1|	-	0.00066	19.3	6.6	0.21	11.2	0.8	2.3	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.1	gi|124027508|ref|YP_001012828.1|	-	0.006	15.5	0.2	0.015	14.2	0.0	1.6	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.14	gi|124027508|ref|YP_001012828.1|	-	0.0062	15.6	6.3	0.02	13.9	1.5	2.2	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_7	PF13241.1	gi|124027508|ref|YP_001012828.1|	-	0.01	16.0	6.4	0.33	11.2	0.1	2.8	2	1	0	2	2	2	0	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|124027508|ref|YP_001012828.1|	-	0.021	13.7	5.1	0.29	9.9	1.5	2.3	2	0	0	2	2	2	0	Lycopene	cyclase	protein
TrkA_N	PF02254.13	gi|124027508|ref|YP_001012828.1|	-	0.045	13.7	2.3	0.093	12.7	0.1	2.2	2	0	0	2	2	2	0	TrkA-N	domain
CPSase_L_chain	PF00289.17	gi|124027508|ref|YP_001012828.1|	-	0.051	13.6	1.2	6.7	6.8	0.0	2.6	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
FMO-like	PF00743.14	gi|124027508|ref|YP_001012828.1|	-	0.093	10.9	0.2	0.5	8.5	0.1	1.8	2	0	0	2	2	2	0	Flavin-binding	monooxygenase-like
AlaDh_PNT_C	PF01262.16	gi|124027508|ref|YP_001012828.1|	-	0.16	11.4	4.8	0.05	13.1	0.7	1.9	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.1	gi|124027508|ref|YP_001012828.1|	-	0.63	9.8	2.7	5	6.8	0.0	2.6	2	1	1	3	3	3	0	FAD-NAD(P)-binding
KH_5	PF13184.1	gi|124027509|ref|YP_001012829.1|	-	6.2e-13	48.3	0.0	1.6e-12	47.0	0.0	1.7	1	0	0	1	1	1	1	NusA-like	KH	domain
F420_ligase	PF01996.11	gi|124027509|ref|YP_001012829.1|	-	0.11	11.5	0.0	0.15	11.0	0.0	1.2	1	0	0	1	1	1	0	F420-0:Gamma-glutamyl	ligase
TruD	PF01142.13	gi|124027510|ref|YP_001012830.1|	-	4.8e-40	137.3	0.0	5.8e-40	137.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
ATP-synt_A	PF00119.15	gi|124027510|ref|YP_001012830.1|	-	0.14	11.6	0.0	0.21	11.0	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	A	chain
PIN	PF01850.16	gi|124027511|ref|YP_001012831.1|	-	1.3e-09	38.3	0.3	1.7e-09	38.0	0.2	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_2	PF10130.4	gi|124027511|ref|YP_001012831.1|	-	0.0041	17.1	0.0	0.0082	16.1	0.0	1.5	1	1	0	1	1	1	1	PIN	domain
Radical_SAM	PF04055.16	gi|124027512|ref|YP_001012832.1|	-	3.8e-11	43.4	0.0	2e-10	41.1	0.0	1.9	1	1	1	2	2	2	1	Radical	SAM	superfamily
OrfB_Zn_ribbon	PF07282.6	gi|124027512|ref|YP_001012832.1|	-	0.00022	20.8	2.0	0.00088	18.8	1.4	1.9	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|124027512|ref|YP_001012832.1|	-	0.0056	15.8	6.4	3	7.1	0.0	3.4	3	0	0	3	3	3	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027512|ref|YP_001012832.1|	-	0.025	14.0	7.5	1.2	8.6	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|124027512|ref|YP_001012832.1|	-	0.049	13.1	9.3	0.21	11.1	0.2	3.4	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ISL3	PF14690.1	gi|124027512|ref|YP_001012832.1|	-	0.21	11.6	0.1	0.21	11.6	0.1	3.3	4	0	0	4	4	4	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DZR	PF12773.2	gi|124027512|ref|YP_001012832.1|	-	2.8	7.8	8.5	0.29	10.9	1.4	2.3	2	1	0	2	2	2	0	Double	zinc	ribbon
RNA_POL_M_15KD	PF02150.11	gi|124027512|ref|YP_001012832.1|	-	7.6	6.3	9.6	2.3	7.9	3.3	2.5	2	1	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
PCMT	PF01135.14	gi|124027514|ref|YP_001012834.1|	-	1.8e-76	256.3	0.0	2.2e-76	256.0	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.2	gi|124027514|ref|YP_001012834.1|	-	9.9e-11	42.2	0.0	1.7e-10	41.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124027514|ref|YP_001012834.1|	-	3.7e-10	39.6	0.0	5.3e-10	39.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124027514|ref|YP_001012834.1|	-	1.9e-09	37.5	0.0	3.6e-09	36.6	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|124027514|ref|YP_001012834.1|	-	4.9e-06	26.2	0.0	6.9e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_3	PF01596.12	gi|124027514|ref|YP_001012834.1|	-	6.6e-06	25.3	0.0	9.3e-06	24.8	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.1	gi|124027514|ref|YP_001012834.1|	-	3.4e-05	24.6	0.0	5.4e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|124027514|ref|YP_001012834.1|	-	0.0012	17.9	0.0	0.0019	17.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_28	PF02636.12	gi|124027514|ref|YP_001012834.1|	-	0.0044	16.4	0.0	0.0055	16.1	0.0	1.1	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_23	PF13489.1	gi|124027514|ref|YP_001012834.1|	-	0.014	15.1	0.0	0.037	13.7	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
ACP_syn_III_C	PF08541.5	gi|124027514|ref|YP_001012834.1|	-	0.014	15.3	0.0	0.032	14.2	0.0	1.5	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF938	PF06080.7	gi|124027514|ref|YP_001012834.1|	-	0.016	14.7	0.0	0.02	14.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
CMAS	PF02353.15	gi|124027514|ref|YP_001012834.1|	-	0.017	14.2	0.0	0.022	13.8	0.0	1.3	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.9	gi|124027514|ref|YP_001012834.1|	-	0.023	14.0	0.0	0.066	12.5	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	small	domain
UPF0020	PF01170.13	gi|124027514|ref|YP_001012834.1|	-	0.024	14.2	0.0	0.035	13.6	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.1	gi|124027514|ref|YP_001012834.1|	-	0.03	14.0	0.0	0.042	13.5	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.11	gi|124027514|ref|YP_001012834.1|	-	0.065	12.8	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_11	PF08241.7	gi|124027514|ref|YP_001012834.1|	-	0.12	12.9	0.0	0.58	10.6	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
Fibrillarin	PF01269.12	gi|124027514|ref|YP_001012834.1|	-	0.17	10.7	0.0	0.25	10.2	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
KaiC	PF06745.8	gi|124027515|ref|YP_001012835.1|	-	4.2e-39	134.0	0.0	9.1e-38	129.6	0.0	2.0	2	0	0	2	2	2	1	KaiC
AAA_25	PF13481.1	gi|124027515|ref|YP_001012835.1|	-	8.8e-13	48.0	0.0	8.4e-10	38.3	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
GvpD	PF07088.6	gi|124027515|ref|YP_001012835.1|	-	3.6e-08	32.1	0.1	7.4e-07	27.8	0.0	2.1	2	0	0	2	2	2	1	GvpD	gas	vesicle	protein
AAA_16	PF13191.1	gi|124027515|ref|YP_001012835.1|	-	4.2e-05	23.6	0.2	0.18	11.7	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027515|ref|YP_001012835.1|	-	0.0014	18.7	0.0	0.033	14.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
DnaB_C	PF03796.10	gi|124027515|ref|YP_001012835.1|	-	0.0019	17.1	0.0	0.023	13.5	0.0	2.5	3	0	0	3	3	3	1	DnaB-like	helicase	C	terminal	domain
AAA	PF00004.24	gi|124027515|ref|YP_001012835.1|	-	0.0031	17.7	0.0	0.0067	16.6	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|124027515|ref|YP_001012835.1|	-	0.0038	16.9	0.1	0.014	15.1	0.1	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_10	PF12846.2	gi|124027515|ref|YP_001012835.1|	-	0.0049	16.3	0.1	0.028	13.8	0.0	2.0	2	0	0	2	2	2	1	AAA-like	domain
IstB_IS21	PF01695.12	gi|124027515|ref|YP_001012835.1|	-	0.0054	16.1	0.0	0.012	15.0	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|124027515|ref|YP_001012835.1|	-	0.016	14.8	0.0	0.06	12.9	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|124027515|ref|YP_001012835.1|	-	0.022	14.2	0.2	0.25	10.7	0.0	2.1	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DUF2075	PF09848.4	gi|124027515|ref|YP_001012835.1|	-	0.027	13.4	0.0	0.038	12.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DUF302	PF03625.9	gi|124027515|ref|YP_001012835.1|	-	0.033	13.7	0.7	0.24	10.9	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF302
Zeta_toxin	PF06414.7	gi|124027515|ref|YP_001012835.1|	-	0.035	13.2	0.0	0.057	12.4	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
ATP-synt_ab	PF00006.20	gi|124027515|ref|YP_001012835.1|	-	0.044	13.2	0.1	0.081	12.4	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ABC_tran	PF00005.22	gi|124027515|ref|YP_001012835.1|	-	0.044	14.0	0.1	0.081	13.2	0.1	1.3	1	0	0	1	1	1	0	ABC	transporter
AAA_17	PF13207.1	gi|124027515|ref|YP_001012835.1|	-	0.054	14.3	0.2	0.17	12.7	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_31	PF13614.1	gi|124027515|ref|YP_001012835.1|	-	0.067	13.1	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|124027515|ref|YP_001012835.1|	-	0.12	11.9	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_24	PF13479.1	gi|124027515|ref|YP_001012835.1|	-	0.23	10.9	0.9	0.7	9.4	0.0	2.1	3	0	0	3	3	2	0	AAA	domain
AAA_23	PF13476.1	gi|124027515|ref|YP_001012835.1|	-	0.49	10.6	1.7	0.49	10.6	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
PBP_like_2	PF12849.2	gi|124027516|ref|YP_001012836.1|	-	1.8e-45	155.6	0.0	2.3e-45	155.2	0.0	1.0	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.20	gi|124027516|ref|YP_001012836.1|	-	2.8e-16	60.1	0.3	3.7e-16	59.7	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PBP_like	PF12727.2	gi|124027516|ref|YP_001012836.1|	-	6e-07	28.6	0.0	1.4e-06	27.4	0.0	1.6	1	1	0	1	1	1	1	PBP	superfamily	domain
BPD_transp_1	PF00528.17	gi|124027517|ref|YP_001012837.1|	-	2.7e-08	33.5	11.6	2.7e-08	33.5	8.0	2.4	1	1	1	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|124027518|ref|YP_001012838.1|	-	8.9e-09	35.1	9.1	8.9e-09	35.1	6.3	1.9	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Peptidase_M50	PF02163.17	gi|124027518|ref|YP_001012838.1|	-	0.98	8.3	4.8	0.13	11.2	0.6	1.6	2	0	0	2	2	2	0	Peptidase	family	M50
DUF3481	PF11980.3	gi|124027518|ref|YP_001012838.1|	-	2.1	8.2	4.6	0.38	10.6	0.5	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3481)
ABC_tran	PF00005.22	gi|124027519|ref|YP_001012839.1|	-	6.5e-34	117.1	0.0	8.3e-34	116.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027519|ref|YP_001012839.1|	-	4.3e-14	53.1	0.0	3.1e-07	30.6	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027519|ref|YP_001012839.1|	-	1.3e-07	31.0	0.0	3.1e-07	29.8	0.0	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|124027519|ref|YP_001012839.1|	-	1.7e-06	28.2	0.1	9.3e-06	25.8	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027519|ref|YP_001012839.1|	-	5.7e-06	25.7	0.0	3.4e-05	23.2	0.0	2.1	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|124027519|ref|YP_001012839.1|	-	2e-05	24.1	0.2	0.0024	17.3	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|124027519|ref|YP_001012839.1|	-	3.2e-05	23.1	0.0	0.12	11.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|124027519|ref|YP_001012839.1|	-	0.00014	22.2	0.0	0.00025	21.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.4	gi|124027519|ref|YP_001012839.1|	-	0.00016	20.4	0.1	0.045	12.3	0.0	2.9	2	2	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_10	PF12846.2	gi|124027519|ref|YP_001012839.1|	-	0.00022	20.7	0.4	0.0025	17.2	0.1	2.3	1	1	1	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|124027519|ref|YP_001012839.1|	-	0.0004	20.4	0.6	0.00095	19.1	0.4	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.13	gi|124027519|ref|YP_001012839.1|	-	0.00055	19.4	0.1	0.0028	17.1	0.0	2.0	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_19	PF13245.1	gi|124027519|ref|YP_001012839.1|	-	0.0011	18.6	0.2	0.003	17.2	0.0	1.9	2	0	0	2	2	1	1	Part	of	AAA	domain
DUF258	PF03193.11	gi|124027519|ref|YP_001012839.1|	-	0.0013	17.9	0.0	0.0023	17.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|124027519|ref|YP_001012839.1|	-	0.0041	16.9	0.0	0.031	14.2	0.0	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_24	PF13479.1	gi|124027519|ref|YP_001012839.1|	-	0.0059	16.2	0.1	0.07	12.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124027519|ref|YP_001012839.1|	-	0.0066	17.2	0.1	0.016	16.0	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|124027519|ref|YP_001012839.1|	-	0.009	15.7	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
NACHT	PF05729.7	gi|124027519|ref|YP_001012839.1|	-	0.01	15.4	0.2	0.022	14.4	0.0	1.6	2	0	0	2	2	2	0	NACHT	domain
cobW	PF02492.14	gi|124027519|ref|YP_001012839.1|	-	0.017	14.5	0.2	0.03	13.7	0.2	1.6	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_33	PF13671.1	gi|124027519|ref|YP_001012839.1|	-	0.017	14.9	0.3	0.028	14.2	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|124027519|ref|YP_001012839.1|	-	0.026	14.1	0.0	0.054	13.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|124027519|ref|YP_001012839.1|	-	0.033	14.0	0.0	0.25	11.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|124027519|ref|YP_001012839.1|	-	0.043	14.1	0.2	0.1	12.9	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|124027519|ref|YP_001012839.1|	-	0.057	13.1	0.3	0.21	11.3	0.0	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MMR_HSR1	PF01926.18	gi|124027519|ref|YP_001012839.1|	-	0.061	13.2	0.3	0.19	11.6	0.2	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.9	gi|124027519|ref|YP_001012839.1|	-	0.069	12.8	0.0	0.16	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.1	gi|124027519|ref|YP_001012839.1|	-	0.075	12.9	0.1	0.36	10.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MutS_V	PF00488.16	gi|124027519|ref|YP_001012839.1|	-	0.085	12.2	0.0	0.21	10.9	0.0	1.5	2	0	0	2	2	2	0	MutS	domain	V
NB-ARC	PF00931.17	gi|124027519|ref|YP_001012839.1|	-	0.12	11.2	0.0	0.22	10.3	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF87	PF01935.12	gi|124027519|ref|YP_001012839.1|	-	0.12	12.1	0.4	0.25	11.1	0.3	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF87
G-alpha	PF00503.15	gi|124027519|ref|YP_001012839.1|	-	0.13	10.9	0.0	0.2	10.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
Adeno_IVa2	PF02456.10	gi|124027519|ref|YP_001012839.1|	-	0.15	10.6	0.0	0.24	10.0	0.0	1.3	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
PRK	PF00485.13	gi|124027519|ref|YP_001012839.1|	-	0.16	11.4	0.0	0.42	10.1	0.0	1.6	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
MMPL	PF03176.10	gi|124027520|ref|YP_001012840.1|	-	3.1e-75	252.9	30.7	3.5e-38	131.1	9.0	2.9	3	0	0	3	3	3	2	MMPL	family
DUF2274	PF10038.4	gi|124027520|ref|YP_001012840.1|	-	0.034	14.2	0.4	1.9	8.6	0.1	3.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2274)
HD	PF01966.17	gi|124027521|ref|YP_001012841.1|	-	0.0011	18.9	0.4	0.0066	16.4	0.3	2.4	1	1	0	1	1	1	1	HD	domain
Helicase_C	PF00271.26	gi|124027522|ref|YP_001012842.1|	-	2e-07	30.7	0.1	4.2e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|124027522|ref|YP_001012842.1|	-	0.0001	21.8	0.0	0.31	10.5	0.0	2.6	3	0	0	3	3	3	2	DEAD/DEAH	box	helicase
DEAD	PF00270.24	gi|124027523|ref|YP_001012843.1|	-	2.5e-06	27.0	0.0	2.8e-06	26.9	0.0	1.0	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_16	PF13191.1	gi|124027523|ref|YP_001012843.1|	-	0.058	13.3	0.1	0.064	13.2	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
Cas_Cas5d	PF09704.5	gi|124027525|ref|YP_001012845.1|	-	2.7e-17	63.1	0.0	3.5e-17	62.7	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DevR	PF01905.11	gi|124027526|ref|YP_001012846.1|	-	4.8e-86	287.9	0.0	5.7e-86	287.6	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Cas_Csa5	PF09702.5	gi|124027527|ref|YP_001012847.1|	-	6.2e-09	35.8	0.3	5.9e-08	32.7	0.2	2.3	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Csa5)
BTAD	PF03704.12	gi|124027527|ref|YP_001012847.1|	-	0.0099	16.1	0.9	0.013	15.8	0.6	1.1	1	0	0	1	1	1	1	Bacterial	transcriptional	activator	domain
HTH_IclR	PF09339.5	gi|124027528|ref|YP_001012848.1|	-	1.9e-08	33.7	1.5	9.1e-08	31.5	0.0	2.6	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|124027528|ref|YP_001012848.1|	-	8.7e-07	28.5	0.1	2.6e-06	27.0	0.0	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|124027528|ref|YP_001012848.1|	-	1.6e-05	24.7	0.1	0.00018	21.4	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.2	gi|124027528|ref|YP_001012848.1|	-	5e-05	23.0	0.1	0.00015	21.4	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|124027528|ref|YP_001012848.1|	-	0.00063	20.0	0.1	0.0011	19.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|124027528|ref|YP_001012848.1|	-	0.0017	18.0	0.7	0.0084	15.7	0.1	2.4	2	0	0	2	2	2	1	MarR	family
HTH_23	PF13384.1	gi|124027528|ref|YP_001012848.1|	-	0.0019	17.8	0.3	0.0089	15.6	0.0	2.3	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_24	PF13412.1	gi|124027528|ref|YP_001012848.1|	-	0.0038	16.5	0.0	0.0097	15.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_28	PF13518.1	gi|124027528|ref|YP_001012848.1|	-	0.029	14.3	0.1	0.21	11.6	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|124027528|ref|YP_001012848.1|	-	0.039	14.0	0.1	13	5.9	0.0	2.9	3	0	0	3	3	3	0	Transcriptional	regulator
HTH_5	PF01022.15	gi|124027528|ref|YP_001012848.1|	-	0.041	13.5	0.2	0.19	11.4	0.0	2.2	2	1	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Peripla_BP_3	PF13377.1	gi|124027528|ref|YP_001012848.1|	-	0.049	13.6	1.4	0.071	13.1	1.0	1.4	1	1	0	1	1	1	0	Periplasmic	binding	protein-like	domain
LZ_Tnp_IS481	PF13011.1	gi|124027528|ref|YP_001012848.1|	-	0.078	13.3	0.3	0.33	11.3	0.0	2.1	3	0	0	3	3	2	0	leucine-zipper	of	insertion	element	IS481
Cas_APE2256	PF09651.5	gi|124027528|ref|YP_001012848.1|	-	0.091	12.4	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_APE2256)
Mga	PF05043.8	gi|124027528|ref|YP_001012848.1|	-	0.12	12.6	0.0	0.23	11.7	0.0	1.4	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
PIN	PF01850.16	gi|124027529|ref|YP_001012849.1|	-	0.00014	22.1	0.9	0.00061	20.1	0.0	2.1	2	1	0	2	2	2	1	PIN	domain
PDDEXK_1	PF12705.2	gi|124027531|ref|YP_001012851.1|	-	1.2e-11	44.5	0.0	1.4e-11	44.2	0.0	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.12	gi|124027531|ref|YP_001012851.1|	-	4.1e-11	43.0	0.0	5.9e-11	42.5	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
DUF3799	PF12684.2	gi|124027531|ref|YP_001012851.1|	-	0.0043	16.4	0.0	0.0059	15.9	0.0	1.1	1	0	0	1	1	1	1	PDDEXK-like	domain	of	unknown	function	(DUF3799)
DUF911	PF06023.7	gi|124027531|ref|YP_001012851.1|	-	0.018	14.2	0.0	0.021	14.0	0.0	1.1	1	0	0	1	1	1	0	Archaeal	protein	of	unknown	function	(DUF911)
WAK_assoc	PF14380.1	gi|124027531|ref|YP_001012851.1|	-	0.072	13.6	0.0	0.098	13.1	0.0	1.2	1	0	0	1	1	1	0	Wall-associated	receptor	kinase	C-terminal
CRISPR_Cas2	PF09827.4	gi|124027532|ref|YP_001012852.1|	-	4.4e-17	61.9	0.1	5.2e-17	61.7	0.1	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Ribosomal_L30	PF00327.15	gi|124027532|ref|YP_001012852.1|	-	0.014	15.0	0.1	0.054	13.0	0.0	1.9	2	0	0	2	2	2	0	Ribosomal	protein	L30p/L7e
GPP34	PF05719.6	gi|124027532|ref|YP_001012852.1|	-	0.036	14.1	0.1	0.042	13.9	0.0	1.1	1	0	0	1	1	1	0	Golgi	phosphoprotein	3	(GPP34)
Pro_Al_protease	PF02983.9	gi|124027532|ref|YP_001012852.1|	-	0.039	13.9	0.1	0.066	13.1	0.0	1.3	1	0	0	1	1	1	0	Alpha-lytic	protease	prodomain
DUF911	PF06023.7	gi|124027533|ref|YP_001012853.1|	-	5.8e-55	186.5	0.0	7.8e-38	130.3	0.0	2.0	1	1	1	2	2	2	2	Archaeal	protein	of	unknown	function	(DUF911)
PDDEXK_1	PF12705.2	gi|124027533|ref|YP_001012853.1|	-	6.7e-09	35.4	0.0	0.00023	20.6	0.0	2.1	2	0	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.12	gi|124027533|ref|YP_001012853.1|	-	0.0011	18.8	0.0	0.015	15.2	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF83
Cas_Cas1	PF01867.11	gi|124027534|ref|YP_001012854.1|	-	1.1e-57	195.2	0.0	1.4e-57	194.9	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
AAA_10	PF12846.2	gi|124027535|ref|YP_001012855.1|	-	3.7e-20	72.5	0.2	2e-11	43.9	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|124027535|ref|YP_001012855.1|	-	4.3e-09	36.5	0.1	1.6e-08	34.6	0.1	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|124027535|ref|YP_001012855.1|	-	6.1e-07	28.1	0.0	0.017	13.5	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|124027535|ref|YP_001012855.1|	-	1.4e-06	27.9	2.1	0.0005	19.6	0.1	2.6	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.4	gi|124027535|ref|YP_001012855.1|	-	1.9e-06	26.7	0.1	6.7e-06	24.9	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.1	gi|124027535|ref|YP_001012855.1|	-	5e-06	26.6	0.0	0.11	12.5	0.0	2.9	2	1	0	2	2	2	2	AAA	domain
Zot	PF05707.7	gi|124027535|ref|YP_001012855.1|	-	2.6e-05	23.7	0.0	0.0077	15.7	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_25	PF13481.1	gi|124027535|ref|YP_001012855.1|	-	9.6e-05	21.8	0.2	0.52	9.6	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|124027535|ref|YP_001012855.1|	-	0.0004	20.4	0.6	0.084	12.8	0.1	3.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|124027535|ref|YP_001012855.1|	-	0.00071	19.7	0.0	1.3	9.2	0.1	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
DEAD	PF00270.24	gi|124027535|ref|YP_001012855.1|	-	0.0019	17.7	0.0	1.3	8.4	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
T2SE	PF00437.15	gi|124027535|ref|YP_001012855.1|	-	0.0038	16.1	0.2	0.0068	15.3	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF2075	PF09848.4	gi|124027535|ref|YP_001012855.1|	-	0.0063	15.5	0.0	0.47	9.3	0.1	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|124027535|ref|YP_001012855.1|	-	0.0077	15.9	0.3	0.07	12.8	0.2	2.7	1	0	0	1	1	1	1	Part	of	AAA	domain
MobB	PF03205.9	gi|124027535|ref|YP_001012855.1|	-	0.014	15.0	0.1	0.039	13.6	0.1	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|124027535|ref|YP_001012855.1|	-	0.014	16.1	0.1	0.053	14.3	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124027535|ref|YP_001012855.1|	-	0.022	14.3	0.1	0.041	13.4	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.7	gi|124027535|ref|YP_001012855.1|	-	0.024	14.3	0.1	0.045	13.3	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
Miro	PF08477.8	gi|124027535|ref|YP_001012855.1|	-	0.033	14.6	0.1	0.11	12.9	0.0	1.8	2	0	0	2	2	1	0	Miro-like	protein
AAA_18	PF13238.1	gi|124027535|ref|YP_001012855.1|	-	0.042	14.1	0.1	0.12	12.6	0.1	1.8	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.8	gi|124027535|ref|YP_001012855.1|	-	0.061	12.2	0.1	0.1	11.5	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Glycos_transf_3	PF00591.16	gi|124027535|ref|YP_001012855.1|	-	0.078	12.3	0.1	0.22	10.8	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	family,	a/b	domain
cobW	PF02492.14	gi|124027535|ref|YP_001012855.1|	-	0.086	12.2	0.2	0.16	11.4	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_23	PF13476.1	gi|124027535|ref|YP_001012855.1|	-	0.094	13.0	0.1	0.16	12.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.4	gi|124027535|ref|YP_001012855.1|	-	0.1	12.0	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Zeta_toxin	PF06414.7	gi|124027535|ref|YP_001012855.1|	-	0.13	11.3	0.1	1.8	7.5	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
NTPase_1	PF03266.10	gi|124027535|ref|YP_001012855.1|	-	0.15	11.7	0.1	0.32	10.7	0.0	1.5	1	0	0	1	1	1	0	NTPase
Sigma54_activat	PF00158.21	gi|124027535|ref|YP_001012855.1|	-	0.16	11.4	0.0	0.41	10.1	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|124027535|ref|YP_001012855.1|	-	0.22	11.8	0.1	0.76	10.0	0.0	1.9	2	0	0	2	2	1	0	ABC	transporter
ResIII	PF04851.10	gi|124027535|ref|YP_001012855.1|	-	0.23	11.2	0.0	5	6.9	0.1	2.1	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
NurA	PF09376.5	gi|124027537|ref|YP_001012857.1|	-	6.9e-09	35.5	0.0	9.9e-09	35.0	0.0	1.2	1	0	0	1	1	1	1	NurA	domain
PAPS_reduct	PF01507.14	gi|124027539|ref|YP_001012859.1|	-	4.4e-37	127.5	0.0	6.5e-37	127.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
Fer4_10	PF13237.1	gi|124027539|ref|YP_001012859.1|	-	1.8e-06	27.6	11.6	1.8e-06	27.6	8.1	2.0	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124027539|ref|YP_001012859.1|	-	8e-05	22.9	15.9	0.00027	21.2	11.0	2.0	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Asn_synthase	PF00733.16	gi|124027539|ref|YP_001012859.1|	-	0.00018	21.0	0.0	0.00039	20.0	0.0	1.5	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.12	gi|124027539|ref|YP_001012859.1|	-	0.00029	19.8	0.0	0.00045	19.2	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
Fer4	PF00037.22	gi|124027539|ref|YP_001012859.1|	-	0.00094	18.6	4.6	0.00094	18.6	3.2	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
tRNA_Me_trans	PF03054.11	gi|124027539|ref|YP_001012859.1|	-	0.0013	17.3	0.0	0.0029	16.1	0.0	1.6	1	1	0	1	1	1	1	tRNA	methyl	transferase
Fer4_18	PF13746.1	gi|124027539|ref|YP_001012859.1|	-	0.0026	18.1	16.6	0.017	15.5	1.2	3.7	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027539|ref|YP_001012859.1|	-	0.0065	16.2	4.5	0.0065	16.2	3.1	3.3	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|124027539|ref|YP_001012859.1|	-	0.0074	16.5	15.6	0.055	13.7	2.5	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124027539|ref|YP_001012859.1|	-	0.0083	15.9	20.7	0.034	14.0	2.3	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|124027539|ref|YP_001012859.1|	-	0.013	15.5	13.7	0.013	15.5	9.5	2.7	3	1	1	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124027539|ref|YP_001012859.1|	-	0.029	14.2	17.5	0.048	13.5	2.0	3.0	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
ThiI	PF02568.9	gi|124027539|ref|YP_001012859.1|	-	0.06	12.7	0.0	0.1	12.0	0.0	1.3	1	0	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
Fer4_16	PF13484.1	gi|124027539|ref|YP_001012859.1|	-	0.22	12.2	19.1	0.11	13.3	3.6	3.0	2	1	1	3	3	2	0	4Fe-4S	double	cluster	binding	domain
QueC	PF06508.8	gi|124027539|ref|YP_001012859.1|	-	0.34	10.1	0.0	0.34	10.1	0.0	1.9	2	0	0	2	2	1	0	Queuosine	biosynthesis	protein	QueC
Fer4_17	PF13534.1	gi|124027539|ref|YP_001012859.1|	-	0.69	10.3	18.4	0.27	11.6	1.3	3.1	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
RHH_1	PF01402.16	gi|124027540|ref|YP_001012860.1|	-	4.8e-10	38.8	0.3	6.4e-10	38.4	0.2	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|124027540|ref|YP_001012860.1|	-	4.3e-09	35.9	0.7	5.3e-09	35.6	0.5	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
DUF2191	PF09957.4	gi|124027540|ref|YP_001012860.1|	-	0.015	15.0	1.1	0.023	14.5	0.7	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
RepB-RCR_reg	PF10723.4	gi|124027540|ref|YP_001012860.1|	-	0.081	12.6	0.0	0.087	12.5	0.0	1.1	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
RHH_1	PF01402.16	gi|124027541|ref|YP_001012861.1|	-	0.00048	19.9	3.0	0.00062	19.5	0.0	2.7	3	0	0	3	3	2	1	Ribbon-helix-helix	protein,	copG	family
Syntaxin_2	PF14523.1	gi|124027541|ref|YP_001012861.1|	-	0.00088	19.2	1.0	0.14	12.1	0.5	2.1	2	0	0	2	2	2	1	Syntaxin-like	protein
AIP3	PF03915.8	gi|124027541|ref|YP_001012861.1|	-	0.0022	17.0	1.1	0.0026	16.7	0.8	1.0	1	0	0	1	1	1	1	Actin	interacting	protein	3
ATG16	PF08614.6	gi|124027541|ref|YP_001012861.1|	-	0.0048	16.7	6.0	0.0069	16.2	4.1	1.3	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
SGT1	PF07093.6	gi|124027541|ref|YP_001012861.1|	-	0.0056	15.1	0.8	0.0062	14.9	0.6	1.1	1	0	0	1	1	1	1	SGT1	protein
Mnd1	PF03962.10	gi|124027541|ref|YP_001012861.1|	-	0.011	15.4	4.3	0.014	15.0	3.0	1.1	1	0	0	1	1	1	0	Mnd1	family
RNA_pol_Rpb2_1	PF04563.10	gi|124027541|ref|YP_001012861.1|	-	0.012	14.5	1.5	0.02	13.8	1.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	beta	subunit
Tektin	PF03148.9	gi|124027541|ref|YP_001012861.1|	-	0.013	14.0	4.8	0.015	13.8	3.3	1.2	1	0	0	1	1	1	0	Tektin	family
AAA_32	PF13654.1	gi|124027541|ref|YP_001012861.1|	-	0.019	13.6	4.9	0.023	13.3	3.4	1.2	1	0	0	1	1	1	0	AAA	domain
ADIP	PF11559.3	gi|124027541|ref|YP_001012861.1|	-	0.02	14.8	4.4	0.027	14.3	3.1	1.1	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
DUF1664	PF07889.7	gi|124027541|ref|YP_001012861.1|	-	0.021	14.6	1.7	0.027	14.2	1.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF2046	PF09755.4	gi|124027541|ref|YP_001012861.1|	-	0.021	13.7	9.2	0.026	13.4	6.4	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	H4	(DUF2046)
Spc7	PF08317.6	gi|124027541|ref|YP_001012861.1|	-	0.024	13.3	5.5	0.03	12.9	3.8	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.7	gi|124027541|ref|YP_001012861.1|	-	0.024	14.4	0.5	0.068	13.0	0.3	1.7	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF445	PF04286.7	gi|124027541|ref|YP_001012861.1|	-	0.025	14.1	2.1	0.033	13.7	1.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
RHH_3	PF12651.2	gi|124027541|ref|YP_001012861.1|	-	0.029	14.0	1.7	0.11	12.3	0.1	2.6	2	1	0	2	2	2	0	Ribbon-helix-helix	domain
DUF892	PF05974.7	gi|124027541|ref|YP_001012861.1|	-	0.034	13.9	2.2	0.06	13.1	0.9	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF892)
RHH_4	PF13467.1	gi|124027541|ref|YP_001012861.1|	-	0.04	13.8	0.0	0.084	12.7	0.0	1.7	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
Zw10	PF06248.8	gi|124027541|ref|YP_001012861.1|	-	0.05	11.7	4.4	0.059	11.5	3.0	1.0	1	0	0	1	1	1	0	Centromere/kinetochore	Zw10
DUF3829	PF12889.2	gi|124027541|ref|YP_001012861.1|	-	0.053	12.7	2.7	0.064	12.4	1.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
HemX	PF04375.9	gi|124027541|ref|YP_001012861.1|	-	0.061	11.9	2.0	0.069	11.7	1.4	1.1	1	0	0	1	1	1	0	HemX
Rootletin	PF15035.1	gi|124027541|ref|YP_001012861.1|	-	0.063	13.2	11.2	0.16	11.9	7.1	2.0	1	1	1	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
GP41	PF00517.12	gi|124027541|ref|YP_001012861.1|	-	0.063	12.8	1.9	0.1	12.1	1.3	1.3	1	0	0	1	1	1	0	Retroviral	envelope	protein
DUF4618	PF15397.1	gi|124027541|ref|YP_001012861.1|	-	0.075	12.3	7.9	0.17	11.1	5.5	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
MIS13	PF08202.6	gi|124027541|ref|YP_001012861.1|	-	0.08	11.9	2.9	1.2	8.1	0.1	2.0	1	1	1	2	2	2	0	Mis12-Mtw1	protein	family
Mlf1IP	PF10248.4	gi|124027541|ref|YP_001012861.1|	-	0.085	12.4	0.0	0.1	12.2	0.0	1.1	1	0	0	1	1	1	0	Myelodysplasia-myeloid	leukemia	factor	1-interacting	protein
Transposase_22	PF02994.9	gi|124027541|ref|YP_001012861.1|	-	0.091	11.2	6.5	0.11	10.9	4.5	1.0	1	0	0	1	1	1	0	L1	transposable	element
BLOC1_2	PF10046.4	gi|124027541|ref|YP_001012861.1|	-	0.092	12.8	3.9	0.12	12.4	1.6	1.9	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Prominin	PF05478.6	gi|124027541|ref|YP_001012861.1|	-	0.098	10.1	1.2	0.12	9.8	0.8	1.1	1	0	0	1	1	1	0	Prominin
DUF1640	PF07798.6	gi|124027541|ref|YP_001012861.1|	-	0.11	12.5	5.3	0.14	12.1	3.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
DUF310	PF03750.8	gi|124027541|ref|YP_001012861.1|	-	0.15	12.2	2.7	0.21	11.8	1.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF310)
NYD-SP28	PF14772.1	gi|124027541|ref|YP_001012861.1|	-	0.15	12.1	7.3	0.19	11.8	5.1	1.3	1	0	0	1	1	1	0	Sperm	tail
Phasin	PF05597.6	gi|124027541|ref|YP_001012861.1|	-	0.16	11.7	4.6	0.27	10.9	3.2	1.5	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
ACCA	PF03255.9	gi|124027541|ref|YP_001012861.1|	-	0.26	10.8	5.1	0.15	11.5	0.4	2.0	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF745	PF05335.8	gi|124027541|ref|YP_001012861.1|	-	0.27	10.7	1.9	0.28	10.6	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF745)
OmpH	PF03938.9	gi|124027541|ref|YP_001012861.1|	-	0.27	11.1	2.9	0.41	10.5	2.0	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Nup54	PF13874.1	gi|124027541|ref|YP_001012861.1|	-	0.28	10.8	6.3	0.42	10.2	4.4	1.3	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
CDC37_N	PF03234.9	gi|124027541|ref|YP_001012861.1|	-	0.31	11.3	3.8	0.44	10.8	2.7	1.3	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
Phage_Gp23	PF10669.4	gi|124027541|ref|YP_001012861.1|	-	0.33	11.0	5.3	0.41	10.7	3.6	1.1	1	0	0	1	1	1	0	Protein	gp23	(Bacteriophage	A118)
DUF4164	PF13747.1	gi|124027541|ref|YP_001012861.1|	-	0.37	10.9	0.1	0.37	10.9	0.1	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Erp_C	PF06780.6	gi|124027541|ref|YP_001012861.1|	-	0.4	10.5	5.6	0.22	11.3	2.0	1.7	1	1	0	1	1	1	0	Erp	protein	C-terminus
FlaC_arch	PF05377.6	gi|124027541|ref|YP_001012861.1|	-	0.45	10.4	4.3	4.1	7.3	0.1	2.7	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF848	PF05852.6	gi|124027541|ref|YP_001012861.1|	-	0.46	10.3	7.0	0.62	9.9	4.5	1.4	1	1	0	1	1	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
MbeD_MobD	PF04899.7	gi|124027541|ref|YP_001012861.1|	-	0.5	10.3	6.3	6.4	6.7	2.3	2.9	2	2	0	2	2	2	0	MbeD/MobD	like
DUF342	PF03961.8	gi|124027541|ref|YP_001012861.1|	-	0.64	8.3	7.2	0.9	7.8	5.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
Prefoldin_2	PF01920.15	gi|124027541|ref|YP_001012861.1|	-	0.65	9.7	10.4	0.17	11.6	1.2	2.2	1	1	1	2	2	2	0	Prefoldin	subunit
DUF4404	PF14357.1	gi|124027541|ref|YP_001012861.1|	-	0.78	10.1	5.1	0.36	11.2	0.6	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4404)
Ead_Ea22	PF13935.1	gi|124027541|ref|YP_001012861.1|	-	0.81	10.0	5.7	1.8	8.8	4.0	1.7	1	1	0	1	1	1	0	Ead/Ea22-like	protein
RasGAP_C	PF03836.10	gi|124027541|ref|YP_001012861.1|	-	0.87	9.2	7.7	0.94	9.1	5.0	1.3	1	1	0	1	1	1	0	RasGAP	C-terminus
DUF4200	PF13863.1	gi|124027541|ref|YP_001012861.1|	-	0.94	9.4	11.4	4.5	7.2	0.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
Phlebovirus_NSM	PF07246.6	gi|124027541|ref|YP_001012861.1|	-	0.95	8.5	3.9	1.2	8.2	2.7	1.2	1	0	0	1	1	1	0	Phlebovirus	nonstructural	protein	NS-M
Occludin_ELL	PF07303.8	gi|124027541|ref|YP_001012861.1|	-	1.1	9.9	6.1	3.1	8.5	3.9	1.9	1	1	1	2	2	2	0	Occludin	homology	domain
SlyX	PF04102.7	gi|124027541|ref|YP_001012861.1|	-	1.2	9.6	5.6	0.43	10.9	0.3	2.5	1	1	1	2	2	2	0	SlyX
Fib_alpha	PF08702.5	gi|124027541|ref|YP_001012861.1|	-	1.2	9.2	4.2	3.9	7.5	2.9	1.9	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
GrpE	PF01025.14	gi|124027541|ref|YP_001012861.1|	-	2.3	7.7	8.5	22	4.5	6.0	2.0	1	1	0	1	1	1	0	GrpE
COG2	PF06148.6	gi|124027541|ref|YP_001012861.1|	-	2.4	8.0	7.3	5.2	6.9	0.7	2.9	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
PhoU	PF01895.14	gi|124027541|ref|YP_001012861.1|	-	3.2	8.2	9.2	3.5	8.1	2.6	2.1	1	1	1	2	2	2	0	PhoU	domain
Peptidase_M3_N	PF08439.5	gi|124027541|ref|YP_001012861.1|	-	3.7	7.6	8.0	0.49	10.4	1.2	2.5	3	1	0	3	3	2	0	Oligopeptidase	F
DUF972	PF06156.8	gi|124027541|ref|YP_001012861.1|	-	5.5	7.3	7.7	28	5.1	5.3	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
IncA	PF04156.9	gi|124027541|ref|YP_001012861.1|	-	8.5	5.9	12.0	30	4.1	8.3	1.8	1	1	0	1	1	1	0	IncA	protein
H-kinase_dim	PF02895.9	gi|124027541|ref|YP_001012861.1|	-	9.3	6.6	7.9	1.1e+02	3.2	5.5	2.4	1	1	0	1	1	1	0	Signal	transducing	histidine	kinase,	homodimeric	domain
Lactamase_B_2	PF12706.2	gi|124027542|ref|YP_001012862.1|	-	2.9e-27	95.4	0.0	4.1e-27	94.9	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|124027542|ref|YP_001012862.1|	-	1.9e-18	66.8	0.1	7.9e-17	61.5	0.1	2.1	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.1	gi|124027542|ref|YP_001012862.1|	-	0.017	14.6	0.1	0.073	12.5	0.0	2.0	3	0	0	3	3	3	0	tRNase	Z	endonuclease
Pribosyltran	PF00156.22	gi|124027543|ref|YP_001012863.1|	-	9.6e-16	57.6	0.5	1.9e-15	56.6	0.4	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.1	gi|124027543|ref|YP_001012863.1|	-	6.2e-11	42.3	2.4	4.9e-10	39.4	1.1	2.1	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
PRTase_2	PF15609.1	gi|124027543|ref|YP_001012863.1|	-	0.00074	18.8	0.0	0.02	14.1	0.0	2.1	1	1	1	2	2	2	1	Phosphoribosyl	transferase
UPRTase	PF14681.1	gi|124027543|ref|YP_001012863.1|	-	0.0014	17.9	0.1	0.0019	17.4	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Peripla_BP_1	PF00532.16	gi|124027543|ref|YP_001012863.1|	-	0.095	11.8	0.2	0.14	11.3	0.2	1.2	1	0	0	1	1	1	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
Pribosyltran_N	PF13793.1	gi|124027543|ref|YP_001012863.1|	-	0.1	12.3	0.1	1.5	8.6	0.0	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
PIG-L	PF02585.12	gi|124027543|ref|YP_001012863.1|	-	0.13	12.8	0.1	0.24	11.9	0.1	1.4	1	0	0	1	1	1	0	GlcNAc-PI	de-N-acetylase
PNP_UDP_1	PF01048.15	gi|124027544|ref|YP_001012864.1|	-	3.9e-15	55.4	0.0	4.8e-15	55.1	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Glycos_trans_3N	PF02885.12	gi|124027545|ref|YP_001012865.1|	-	0.041	13.4	0.4	1.1	8.9	0.0	2.3	1	1	1	2	2	2	0	Glycosyl	transferase	family,	helical	bundle	domain
PIN	PF01850.16	gi|124027546|ref|YP_001012866.1|	-	9.1e-14	51.8	1.7	1.1e-13	51.5	1.2	1.0	1	0	0	1	1	1	1	PIN	domain
Apo-CII	PF05355.6	gi|124027546|ref|YP_001012866.1|	-	0.0035	17.1	0.1	0.0064	16.3	0.1	1.4	1	0	0	1	1	1	1	Apolipoprotein	C-II
SIS_2	PF13580.1	gi|124027547|ref|YP_001012867.1|	-	5.3e-05	22.9	0.2	0.00044	19.9	0.0	2.2	1	1	1	2	2	2	1	SIS	domain
SIS	PF01380.17	gi|124027547|ref|YP_001012867.1|	-	8.3e-05	22.1	0.6	0.00098	18.7	0.1	2.8	2	1	1	3	3	3	1	SIS	domain
POR	PF01558.13	gi|124027548|ref|YP_001012868.1|	-	1e-40	139.4	0.0	1.2e-40	139.2	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.22	gi|124027549|ref|YP_001012869.1|	-	5.5e-16	57.4	15.6	5.4e-08	32.1	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|124027549|ref|YP_001012869.1|	-	6.6e-13	48.8	31.6	1.1e-07	32.0	8.3	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124027549|ref|YP_001012869.1|	-	2.3e-12	46.5	6.3	3.4e-12	46.0	4.4	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027549|ref|YP_001012869.1|	-	9.4e-11	41.0	13.2	1.9e-05	24.3	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|124027549|ref|YP_001012869.1|	-	8.9e-09	35.9	8.2	0.00037	21.1	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|124027549|ref|YP_001012869.1|	-	1e-08	34.5	12.2	4.1e-05	23.2	1.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124027549|ref|YP_001012869.1|	-	1.3e-08	34.4	23.3	9.6e-07	28.5	8.6	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124027549|ref|YP_001012869.1|	-	6.9e-08	32.6	18.9	9.4e-07	29.0	7.2	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124027549|ref|YP_001012869.1|	-	7.2e-07	29.1	7.4	1.1e-06	28.5	5.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124027549|ref|YP_001012869.1|	-	2e-05	25.0	8.8	0.013	16.0	0.2	2.5	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|124027549|ref|YP_001012869.1|	-	3.1e-05	23.9	12.4	0.004	17.3	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|124027549|ref|YP_001012869.1|	-	3.4e-05	24.1	4.6	0.066	13.6	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124027549|ref|YP_001012869.1|	-	0.00054	20.2	10.1	0.0032	17.7	7.3	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|124027549|ref|YP_001012869.1|	-	0.0018	18.6	11.3	0.012	16.0	0.6	2.5	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|124027549|ref|YP_001012869.1|	-	0.74	10.5	17.7	0.38	11.4	4.4	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
TNFR_c6	PF00020.13	gi|124027549|ref|YP_001012869.1|	-	1	9.4	7.6	1.5	8.9	0.7	2.4	2	0	0	2	2	2	0	TNFR/NGFR	cysteine-rich	region
POR_N	PF01855.14	gi|124027550|ref|YP_001012870.1|	-	2.9e-69	233.0	1.9	4.1e-69	232.6	1.3	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|124027550|ref|YP_001012870.1|	-	6.8e-07	29.2	2.6	9.6e-07	28.7	0.2	2.2	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
TroA	PF01297.12	gi|124027550|ref|YP_001012870.1|	-	0.022	14.0	1.1	0.042	13.0	0.3	1.7	2	0	0	2	2	2	0	Periplasmic	solute	binding	protein	family
TPP_enzyme_N	PF02776.13	gi|124027550|ref|YP_001012870.1|	-	0.087	12.3	2.5	0.17	11.3	1.8	1.5	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|124027551|ref|YP_001012871.1|	-	4.5e-27	94.4	0.0	6.9e-27	93.9	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
LexA_DNA_bind	PF01726.11	gi|124027551|ref|YP_001012871.1|	-	0.12	11.9	0.0	0.24	10.9	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_38	PF13936.1	gi|124027551|ref|YP_001012871.1|	-	0.17	11.4	0.2	0.3	10.6	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF104	PF01954.11	gi|124027552|ref|YP_001012872.1|	-	4.3e-20	71.4	3.2	5.1e-20	71.2	2.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF104
PIN	PF01850.16	gi|124027553|ref|YP_001012873.1|	-	3e-06	27.5	0.1	3.5e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
NPV_P10	PF05531.7	gi|124027553|ref|YP_001012873.1|	-	0.12	12.5	0.1	0.31	11.2	0.1	1.6	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Antitoxin-MazE	PF04014.13	gi|124027554|ref|YP_001012874.1|	-	4.8e-10	38.9	0.5	7e-10	38.4	0.3	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
MraZ	PF02381.13	gi|124027554|ref|YP_001012874.1|	-	0.0064	16.2	0.0	0.0083	15.8	0.0	1.5	1	1	0	1	1	1	1	MraZ	protein
Poly_export	PF02563.11	gi|124027554|ref|YP_001012874.1|	-	0.028	14.1	0.0	1.7	8.4	0.0	2.4	1	1	1	2	2	2	0	Polysaccharide	biosynthesis/export	protein
PIN	PF01850.16	gi|124027555|ref|YP_001012875.1|	-	1.7e-09	38.0	0.7	2e-09	37.7	0.5	1.1	1	0	0	1	1	1	1	PIN	domain
Peptidase_MA_2	PF13485.1	gi|124027556|ref|YP_001012876.1|	-	0.00057	19.9	0.0	0.00073	19.5	0.0	1.2	1	0	0	1	1	1	1	Peptidase	MA	superfamily
Peptidase_M1	PF01433.15	gi|124027556|ref|YP_001012876.1|	-	0.011	14.9	0.0	0.013	14.6	0.0	1.1	1	0	0	1	1	1	0	Peptidase	family	M1
PaREP1	PF05942.6	gi|124027557|ref|YP_001012877.1|	-	2.1e-27	95.2	6.2	3.1e-27	94.7	4.3	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
RHH_1	PF01402.16	gi|124027557|ref|YP_001012877.1|	-	0.0012	18.6	0.7	0.0012	18.6	0.5	2.9	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
HEPN	PF05168.9	gi|124027557|ref|YP_001012877.1|	-	0.0019	18.0	4.3	0.023	14.5	3.0	2.1	1	1	0	1	1	1	1	HEPN	domain
Alkyl_sulf_dimr	PF14863.1	gi|124027557|ref|YP_001012877.1|	-	0.04	14.1	0.1	0.059	13.6	0.1	1.3	1	0	0	1	1	1	0	Alkyl	sulfatase	dimerisation
DUF3445	PF11927.3	gi|124027557|ref|YP_001012877.1|	-	0.093	12.1	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3445)
DUF3022	PF11226.3	gi|124027557|ref|YP_001012877.1|	-	0.36	10.7	3.2	0.83	9.5	0.0	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3022)
DUF4398	PF14346.1	gi|124027557|ref|YP_001012877.1|	-	1.8	8.6	7.2	0.58	10.2	3.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
DUF4157	PF13699.1	gi|124027558|ref|YP_001012878.1|	-	0.23	11.6	0.9	0.79	9.8	0.7	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
DUF108	PF01958.13	gi|124027559|ref|YP_001012879.1|	-	6.4e-32	109.6	2.0	9.7e-32	109.0	1.4	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF108
NAD_binding_3	PF03447.11	gi|124027559|ref|YP_001012879.1|	-	4.3e-19	69.0	2.3	3.9e-18	65.9	0.2	2.1	2	0	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
QRPTase_C	PF01729.14	gi|124027560|ref|YP_001012880.1|	-	4.1e-57	192.3	1.6	5.3e-57	192.0	1.1	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|124027560|ref|YP_001012880.1|	-	5.7e-17	61.3	0.0	1.6e-16	59.8	0.0	1.8	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
NadA	PF02445.11	gi|124027561|ref|YP_001012881.1|	-	3.6e-99	331.3	0.0	4.1e-99	331.1	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
Sigma70_r4_2	PF08281.7	gi|124027561|ref|YP_001012881.1|	-	0.044	13.2	0.2	0.14	11.6	0.1	1.9	1	0	0	1	1	1	0	Sigma-70,	region	4
Sua5_yciO_yrdC	PF01300.13	gi|124027561|ref|YP_001012881.1|	-	0.055	12.7	0.0	0.19	10.9	0.0	1.8	2	0	0	2	2	2	0	Telomere	recombination
ADP_ribosyl_GH	PF03747.9	gi|124027562|ref|YP_001012882.1|	-	9e-37	127.4	2.5	1e-36	127.2	1.7	1.0	1	0	0	1	1	1	1	ADP-ribosylglycohydrolase
SHOCT	PF09851.4	gi|124027563|ref|YP_001012883.1|	-	1.8e-10	39.8	6.8	2.1e-10	39.7	2.9	2.2	2	0	0	2	2	2	1	Short	C-terminal	domain
E1_dh	PF00676.15	gi|124027563|ref|YP_001012883.1|	-	0.0022	16.7	0.9	0.0027	16.4	0.6	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DMAP_binding	PF06464.6	gi|124027563|ref|YP_001012883.1|	-	0.04	14.5	3.2	0.04	14.5	2.2	1.9	1	1	1	2	2	2	0	DMAP1-binding	Domain
GvpG	PF05120.7	gi|124027563|ref|YP_001012883.1|	-	0.079	12.7	5.4	0.15	11.8	3.8	1.6	1	1	0	1	1	1	0	Gas	vesicle	protein	G
RPW8	PF05659.6	gi|124027563|ref|YP_001012883.1|	-	0.094	12.2	3.2	0.093	12.2	2.2	1.1	1	0	0	1	1	1	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
bPH_3	PF14470.1	gi|124027564|ref|YP_001012884.1|	-	1.3e-18	66.9	0.1	1.6e-18	66.7	0.0	1.0	1	0	0	1	1	1	1	Bacterial	PH	domain
bPH_1	PF08000.6	gi|124027564|ref|YP_001012884.1|	-	0.0001	21.9	0.1	0.00014	21.4	0.1	1.3	1	0	0	1	1	1	1	Bacterial	PH	domain
DUF4208	PF13907.1	gi|124027564|ref|YP_001012884.1|	-	0.12	12.6	0.3	2.8	8.2	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4208)
MR_MLE_C	PF13378.1	gi|124027565|ref|YP_001012885.1|	-	1.8e-21	76.1	0.8	1.3e-20	73.4	0.3	2.2	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MR_MLE	PF01188.16	gi|124027565|ref|YP_001012885.1|	-	1e-16	61.2	0.7	2.6e-16	59.8	0.5	1.8	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_N	PF02746.11	gi|124027565|ref|YP_001012885.1|	-	3.3e-09	36.7	0.6	2.3e-08	34.0	0.0	2.4	2	2	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
ThiG	PF05690.9	gi|124027565|ref|YP_001012885.1|	-	0.0016	17.5	1.7	0.0025	16.9	1.1	1.2	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
MAAL_C	PF07476.6	gi|124027565|ref|YP_001012885.1|	-	0.0046	15.9	0.1	0.0071	15.3	0.1	1.2	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
SBP_bac_3	PF00497.15	gi|124027566|ref|YP_001012886.1|	-	4.2e-74	248.5	1.1	4.9e-74	248.3	0.8	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Phosphonate-bd	PF12974.2	gi|124027566|ref|YP_001012886.1|	-	2.9e-09	36.6	0.4	5.5e-09	35.7	0.3	1.4	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|124027566|ref|YP_001012886.1|	-	1.9e-08	34.1	1.1	0.0003	20.4	0.1	2.2	1	1	1	2	2	2	2	NMT1/THI5	like
OpuAC	PF04069.7	gi|124027566|ref|YP_001012886.1|	-	7.2e-07	28.8	1.2	0.00085	18.7	0.4	2.1	2	0	0	2	2	2	2	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
Lipoprotein_9	PF03180.9	gi|124027566|ref|YP_001012886.1|	-	0.00032	19.6	1.3	0.00055	18.9	0.2	1.9	2	0	0	2	2	2	1	NLPA	lipoprotein
PTS_IIB	PF02302.12	gi|124027566|ref|YP_001012886.1|	-	0.028	14.8	1.5	0.18	12.2	0.2	2.2	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Methyltransf_31	PF13847.1	gi|124027566|ref|YP_001012886.1|	-	0.028	13.9	0.1	1.2	8.7	0.0	2.1	2	0	0	2	2	2	0	Methyltransferase	domain
TctC	PF03401.9	gi|124027566|ref|YP_001012886.1|	-	0.029	13.2	0.1	1.5	7.7	0.0	2.2	1	1	1	2	2	2	0	Tripartite	tricarboxylate	transporter	family	receptor
NMT1_2	PF13379.1	gi|124027566|ref|YP_001012886.1|	-	0.066	12.5	0.0	2.2	7.5	0.0	2.2	2	0	0	2	2	2	0	NMT1-like	family
RBD	PF02196.10	gi|124027566|ref|YP_001012886.1|	-	0.15	11.8	0.0	0.46	10.2	0.0	1.8	1	0	0	1	1	1	0	Raf-like	Ras-binding	domain
BPD_transp_1	PF00528.17	gi|124027567|ref|YP_001012887.1|	-	2.5e-15	56.4	17.0	2.5e-15	56.4	11.8	1.8	1	1	1	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|124027568|ref|YP_001012888.1|	-	1.8e-35	122.2	0.0	2.5e-35	121.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027568|ref|YP_001012888.1|	-	1.2e-17	64.7	0.0	1.9e-14	54.3	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|124027568|ref|YP_001012888.1|	-	6.4e-10	38.6	0.1	2e-05	23.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|124027568|ref|YP_001012888.1|	-	1.5e-06	27.5	0.0	0.013	14.5	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124027568|ref|YP_001012888.1|	-	3e-06	26.6	0.0	5.7e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|124027568|ref|YP_001012888.1|	-	1.6e-05	24.5	0.1	0.0069	15.8	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_16	PF13191.1	gi|124027568|ref|YP_001012888.1|	-	1.8e-05	24.7	1.8	0.00087	19.3	1.2	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
ABC_ATPase	PF09818.4	gi|124027568|ref|YP_001012888.1|	-	0.00011	20.9	0.3	0.19	10.2	0.0	2.7	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_23	PF13476.1	gi|124027568|ref|YP_001012888.1|	-	0.00021	21.6	0.0	0.00025	21.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|124027568|ref|YP_001012888.1|	-	0.0007	18.8	0.0	0.0011	18.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_13	PF13166.1	gi|124027568|ref|YP_001012888.1|	-	0.0011	17.5	0.0	0.036	12.5	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|124027568|ref|YP_001012888.1|	-	0.0023	18.2	0.0	0.3	11.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|124027568|ref|YP_001012888.1|	-	0.0023	18.0	0.0	0.022	14.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|124027568|ref|YP_001012888.1|	-	0.0087	15.6	0.0	0.024	14.2	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|124027568|ref|YP_001012888.1|	-	0.0098	15.7	0.0	0.095	12.5	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124027568|ref|YP_001012888.1|	-	0.0099	16.7	2.5	0.038	14.7	0.4	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|124027568|ref|YP_001012888.1|	-	0.013	15.2	0.3	0.056	13.1	0.0	2.2	3	0	0	3	3	1	0	Part	of	AAA	domain
SbcCD_C	PF13558.1	gi|124027568|ref|YP_001012888.1|	-	0.013	15.3	0.0	0.13	12.2	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Arch_ATPase	PF01637.13	gi|124027568|ref|YP_001012888.1|	-	0.014	15.1	0.2	0.1	12.2	0.2	2.1	1	1	0	1	1	1	0	Archaeal	ATPase
AAA_25	PF13481.1	gi|124027568|ref|YP_001012888.1|	-	0.015	14.7	0.2	0.13	11.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
MutS_V	PF00488.16	gi|124027568|ref|YP_001012888.1|	-	0.017	14.5	0.0	0.23	10.8	0.0	2.1	2	0	0	2	2	2	0	MutS	domain	V
NACHT	PF05729.7	gi|124027568|ref|YP_001012888.1|	-	0.027	14.1	0.0	0.13	11.9	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_14	PF13173.1	gi|124027568|ref|YP_001012888.1|	-	0.034	14.0	0.0	0.093	12.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|124027568|ref|YP_001012888.1|	-	0.034	14.3	0.0	6.9	6.8	0.0	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MobB	PF03205.9	gi|124027568|ref|YP_001012888.1|	-	0.058	13.1	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
IstB_IS21	PF01695.12	gi|124027568|ref|YP_001012888.1|	-	0.068	12.5	0.1	1.2	8.5	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.9	gi|124027568|ref|YP_001012888.1|	-	0.09	12.4	0.2	2.6	7.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
G-alpha	PF00503.15	gi|124027568|ref|YP_001012888.1|	-	0.11	11.1	0.0	0.12	11.0	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
KH_2	PF07650.12	gi|124027568|ref|YP_001012888.1|	-	0.49	9.9	3.3	0.63	9.6	0.5	2.5	2	1	0	2	2	2	0	KH	domain
BPD_transp_1	PF00528.17	gi|124027569|ref|YP_001012889.1|	-	7.8e-19	67.9	15.0	9.8e-19	67.5	10.4	1.1	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
HEAT_PBS	PF03130.11	gi|124027569|ref|YP_001012889.1|	-	0.19	12.3	2.1	1.4	9.6	0.7	3.1	2	1	0	2	2	2	0	PBS	lyase	HEAT-like	repeat
Cob_adeno_trans	PF01923.13	gi|124027570|ref|YP_001012890.1|	-	1.8e-07	31.1	0.0	4.5e-07	29.7	0.0	1.8	1	1	0	1	1	1	1	Cobalamin	adenosyltransferase
Plectin	PF00681.15	gi|124027570|ref|YP_001012890.1|	-	0.064	12.7	0.0	0.14	11.6	0.0	1.6	1	0	0	1	1	1	0	Plectin	repeat
HTH_AsnC-type	PF13404.1	gi|124027572|ref|YP_001012892.1|	-	3.6e-08	32.8	0.7	4.8e-08	32.3	0.5	1.2	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027572|ref|YP_001012892.1|	-	5.1e-08	32.1	0.1	6.9e-08	31.7	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|124027572|ref|YP_001012892.1|	-	2.5e-07	30.1	0.1	3.4e-07	29.7	0.1	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|124027572|ref|YP_001012892.1|	-	7.6e-07	28.7	0.5	1.1e-06	28.1	0.3	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|124027572|ref|YP_001012892.1|	-	6e-06	25.8	0.0	8.3e-06	25.4	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|124027572|ref|YP_001012892.1|	-	2.4e-05	24.1	0.0	3.4e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_11	PF08279.7	gi|124027572|ref|YP_001012892.1|	-	2.7e-05	23.7	0.1	3.5e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|124027572|ref|YP_001012892.1|	-	4.1e-05	23.2	0.1	6.2e-05	22.6	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|124027572|ref|YP_001012892.1|	-	0.00011	21.8	0.0	0.00015	21.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.7	gi|124027572|ref|YP_001012892.1|	-	0.00016	21.1	0.1	0.00022	20.7	0.1	1.1	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|124027572|ref|YP_001012892.1|	-	0.0008	19.6	0.2	0.0011	19.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|124027572|ref|YP_001012892.1|	-	0.001	18.8	0.1	0.0015	18.2	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
FeoC	PF09012.5	gi|124027572|ref|YP_001012892.1|	-	0.0018	17.9	0.1	0.0025	17.4	0.0	1.2	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_12	PF08461.5	gi|124027572|ref|YP_001012892.1|	-	0.0039	16.8	0.2	0.0084	15.8	0.1	1.6	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_CodY	PF08222.6	gi|124027572|ref|YP_001012892.1|	-	0.0067	15.7	0.4	0.011	15.0	0.3	1.4	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
DUF2250	PF10007.4	gi|124027572|ref|YP_001012892.1|	-	0.0069	16.2	0.0	0.0091	15.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Rrf2	PF02082.15	gi|124027572|ref|YP_001012892.1|	-	0.012	15.6	0.4	0.052	13.6	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
HxlR	PF01638.12	gi|124027572|ref|YP_001012892.1|	-	0.015	14.9	0.1	0.017	14.6	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_7	PF02796.10	gi|124027572|ref|YP_001012892.1|	-	0.057	13.2	0.0	0.096	12.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
MotA_activ	PF09114.5	gi|124027572|ref|YP_001012892.1|	-	0.068	12.9	0.0	0.088	12.5	0.0	1.1	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
GntR	PF00392.16	gi|124027572|ref|YP_001012892.1|	-	0.15	11.5	0.7	0.28	10.6	0.5	1.4	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF498	PF04430.9	gi|124027573|ref|YP_001012893.1|	-	2.2e-22	78.6	0.0	2.5e-22	78.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF498/DUF598)
Metallophos_2	PF12850.2	gi|124027574|ref|YP_001012894.1|	-	5.5e-29	101.0	0.1	6.2e-29	100.8	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|124027574|ref|YP_001012894.1|	-	3.7e-08	33.0	0.1	0.00056	19.3	0.0	2.1	1	1	0	2	2	2	2	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|124027574|ref|YP_001012894.1|	-	0.019	14.1	0.1	0.13	11.4	0.0	1.9	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
Usp	PF00582.21	gi|124027575|ref|YP_001012895.1|	-	4.2e-33	114.5	1.5	4.6e-33	114.3	1.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|124027575|ref|YP_001012895.1|	-	0.0019	17.5	0.1	0.015	14.6	0.1	2.0	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PGM_PMM_I	PF02878.11	gi|124027575|ref|YP_001012895.1|	-	0.012	15.0	0.1	0.059	12.8	0.0	1.9	2	0	0	2	2	2	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
Nitro_FeMo-Co	PF02579.12	gi|124027575|ref|YP_001012895.1|	-	0.017	15.2	1.5	0.17	11.9	0.0	2.7	2	1	1	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
IF3_N	PF05198.11	gi|124027575|ref|YP_001012895.1|	-	0.028	14.3	0.0	8	6.4	0.0	2.4	2	1	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Hydrolase_like	PF13242.1	gi|124027575|ref|YP_001012895.1|	-	0.035	13.8	0.0	0.061	13.0	0.0	1.5	1	0	0	1	1	1	0	HAD-hyrolase-like
Ldh_2	PF02615.9	gi|124027575|ref|YP_001012895.1|	-	0.035	12.8	0.2	0.32	9.6	0.0	1.9	2	0	0	2	2	2	0	Malate/L-lactate	dehydrogenase
Polysacc_deac_2	PF04748.8	gi|124027575|ref|YP_001012895.1|	-	0.089	11.7	0.3	13	4.7	0.0	2.5	1	1	2	3	3	3	0	Divergent	polysaccharide	deacetylase
ADH_zinc_N	PF00107.21	gi|124027575|ref|YP_001012895.1|	-	0.1	12.1	0.3	5.3	6.6	0.1	2.1	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
DHH	PF01368.15	gi|124027576|ref|YP_001012896.1|	-	1.6e-06	27.8	0.0	2.2e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	DHH	family
NTP_transf_3	PF12804.2	gi|124027576|ref|YP_001012896.1|	-	0.015	15.3	0.8	0.03	14.3	0.6	1.6	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Nitro_FeMo-Co	PF02579.12	gi|124027577|ref|YP_001012897.1|	-	3.5e-16	59.0	0.1	7.1e-16	58.0	0.0	1.5	2	0	0	2	2	2	1	Dinitrogenase	iron-molybdenum	cofactor
Asp_Glu_race	PF01177.17	gi|124027577|ref|YP_001012897.1|	-	0.1	12.4	0.1	0.17	11.7	0.1	1.4	1	1	0	1	1	1	0	Asp/Glu/Hydantoin	racemase
CcdA	PF07362.7	gi|124027578|ref|YP_001012898.1|	-	0.0053	16.6	0.2	0.0063	16.3	0.1	1.2	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
GABP-alpha	PF11620.3	gi|124027579|ref|YP_001012899.1|	-	0.056	13.4	0.1	0.63	10.0	0.1	2.0	1	1	1	2	2	2	0	GA-binding	protein	alpha	chain
Thioredoxin	PF00085.15	gi|124027580|ref|YP_001012900.1|	-	2.6e-11	43.1	0.0	3.5e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|124027580|ref|YP_001012900.1|	-	2.4e-05	24.4	0.2	0.00031	20.9	0.2	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|124027580|ref|YP_001012900.1|	-	6.9e-05	22.5	0.3	0.00056	19.6	0.1	2.1	2	0	0	2	2	2	1	Thioredoxin	domain
Glutaredoxin	PF00462.19	gi|124027580|ref|YP_001012900.1|	-	0.0069	16.3	0.4	0.015	15.2	0.2	1.7	1	0	0	1	1	1	1	Glutaredoxin
KaiB	PF07689.7	gi|124027580|ref|YP_001012900.1|	-	0.093	12.2	0.0	0.17	11.3	0.0	1.5	1	0	0	1	1	1	0	KaiB	domain
UPF0278	PF08745.6	gi|124027580|ref|YP_001012900.1|	-	0.12	11.6	0.1	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	UPF0278	family
Thioredoxin_4	PF13462.1	gi|124027580|ref|YP_001012900.1|	-	0.15	12.0	1.0	0.56	10.2	0.7	1.9	1	1	0	1	1	1	0	Thioredoxin
Phi-29_GP16_7	PF06720.6	gi|124027580|ref|YP_001012900.1|	-	0.17	11.5	0.3	0.25	11.0	0.2	1.3	1	0	0	1	1	1	0	Bacteriophage	phi-29	early	protein	GP16.7
PDDEXK_1	PF12705.2	gi|124027581|ref|YP_001012901.1|	-	3.9e-11	42.8	0.0	4.7e-11	42.5	0.0	1.2	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.12	gi|124027581|ref|YP_001012901.1|	-	0.0022	17.9	0.0	0.0062	16.4	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
HTH_20	PF12840.2	gi|124027582|ref|YP_001012902.1|	-	1.3e-08	34.5	0.3	2.1e-07	30.6	0.0	2.7	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027582|ref|YP_001012902.1|	-	0.074	12.4	0.0	0.8	9.1	0.0	2.4	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
AAA_28	PF13521.1	gi|124027583|ref|YP_001012903.1|	-	5.1e-24	85.0	0.0	5.8e-24	84.8	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|124027583|ref|YP_001012903.1|	-	2.8e-05	24.4	0.0	6.5e-05	23.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027583|ref|YP_001012903.1|	-	7.1e-05	23.6	0.1	0.00012	22.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027583|ref|YP_001012903.1|	-	0.00026	20.6	1.4	0.0046	16.6	0.0	2.5	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|124027583|ref|YP_001012903.1|	-	0.0008	19.4	0.1	0.001	19.1	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Thymidylate_kin	PF02223.12	gi|124027583|ref|YP_001012903.1|	-	0.00095	18.5	0.0	0.0013	18.1	0.0	1.4	1	1	0	1	1	1	1	Thymidylate	kinase
KTI12	PF08433.5	gi|124027583|ref|YP_001012903.1|	-	0.0016	17.7	0.0	0.0028	16.9	0.0	1.3	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
MobB	PF03205.9	gi|124027583|ref|YP_001012903.1|	-	0.0024	17.6	0.0	0.0077	15.9	0.0	1.8	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RuvB_N	PF05496.7	gi|124027583|ref|YP_001012903.1|	-	0.0053	15.8	0.0	0.0076	15.3	0.0	1.2	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
CbiA	PF01656.18	gi|124027583|ref|YP_001012903.1|	-	0.012	15.0	0.0	0.031	13.6	0.0	1.7	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_30	PF13604.1	gi|124027583|ref|YP_001012903.1|	-	0.019	14.5	0.0	0.034	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|124027583|ref|YP_001012903.1|	-	0.019	14.6	0.0	0.041	13.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|124027583|ref|YP_001012903.1|	-	0.023	14.5	0.0	0.055	13.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|124027583|ref|YP_001012903.1|	-	0.026	14.6	0.0	0.037	14.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124027583|ref|YP_001012903.1|	-	0.028	14.1	0.1	0.048	13.3	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_31	PF13614.1	gi|124027583|ref|YP_001012903.1|	-	0.049	13.5	0.0	0.11	12.4	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA	PF00004.24	gi|124027583|ref|YP_001012903.1|	-	0.058	13.5	0.0	0.079	13.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|124027583|ref|YP_001012903.1|	-	0.069	12.8	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	NTPase
SRP54	PF00448.17	gi|124027583|ref|YP_001012903.1|	-	0.076	12.4	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ArgK	PF03308.11	gi|124027583|ref|YP_001012903.1|	-	0.096	11.4	0.0	0.15	10.8	0.0	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_10	PF12846.2	gi|124027583|ref|YP_001012903.1|	-	0.11	11.9	0.0	0.29	10.5	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
Phosphodiest	PF01663.17	gi|124027585|ref|YP_001012905.1|	-	4.4e-06	26.2	0.1	6.4e-06	25.7	0.1	1.3	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.7	gi|124027585|ref|YP_001012905.1|	-	0.16	11.5	0.1	0.27	10.8	0.1	1.3	1	0	0	1	1	1	0	PglZ	domain
DUF3367	PF11847.3	gi|124027586|ref|YP_001012906.1|	-	0.0068	14.4	3.0	0.0082	14.1	2.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3367)
MMPL	PF03176.10	gi|124027586|ref|YP_001012906.1|	-	5.6	5.5	8.9	6.3	5.4	6.2	1.3	1	1	0	1	1	1	0	MMPL	family
HTH_24	PF13412.1	gi|124027587|ref|YP_001012907.1|	-	3.8e-08	32.5	2.2	9.2e-08	31.3	0.0	2.4	2	1	1	3	3	3	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|124027587|ref|YP_001012907.1|	-	4.4e-06	26.2	0.0	9.2e-06	25.2	0.0	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|124027587|ref|YP_001012907.1|	-	3.5e-05	23.3	0.6	3.5e-05	23.3	0.4	2.0	2	0	0	2	2	2	1	MarR	family
Penicillinase_R	PF03965.11	gi|124027587|ref|YP_001012907.1|	-	6.2e-05	23.0	0.0	8.3e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
DUF4423	PF14394.1	gi|124027587|ref|YP_001012907.1|	-	0.00024	20.6	0.0	0.0031	17.0	0.0	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.4	gi|124027587|ref|YP_001012907.1|	-	0.00043	20.1	0.0	0.00091	19.0	0.0	1.5	2	0	0	2	2	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_32	PF13565.1	gi|124027587|ref|YP_001012907.1|	-	0.0011	19.7	2.1	0.037	14.8	0.0	2.5	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_20	PF12840.2	gi|124027587|ref|YP_001012907.1|	-	0.0012	18.5	0.6	0.0012	18.5	0.4	2.3	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|124027587|ref|YP_001012907.1|	-	0.002	17.6	1.6	0.002	17.6	0.3	1.7	2	0	0	2	2	1	1	IclR	helix-turn-helix	domain
FaeA	PF04703.7	gi|124027587|ref|YP_001012907.1|	-	0.0022	18.1	0.0	0.0069	16.5	0.0	1.7	1	1	1	2	2	2	1	FaeA-like	protein
DUF4201	PF13870.1	gi|124027587|ref|YP_001012907.1|	-	0.0029	17.0	0.1	0.0046	16.4	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4201)
PaaX	PF07848.7	gi|124027587|ref|YP_001012907.1|	-	0.003	17.5	0.1	0.0056	16.6	0.0	1.5	1	0	0	1	1	1	1	PaaX-like	protein
BMFP	PF04380.8	gi|124027587|ref|YP_001012907.1|	-	0.0036	17.3	5.9	0.015	15.4	1.5	2.3	2	0	0	2	2	2	1	Membrane	fusogenic	activity
EAP30	PF04157.11	gi|124027587|ref|YP_001012907.1|	-	0.0037	16.4	0.0	0.024	13.8	0.0	1.8	2	0	0	2	2	2	1	EAP30/Vps36	family
Phage_rep_org_N	PF09681.5	gi|124027587|ref|YP_001012907.1|	-	0.0039	16.7	0.0	0.0058	16.1	0.0	1.3	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Med9	PF07544.8	gi|124027587|ref|YP_001012907.1|	-	0.0046	16.6	0.5	0.02	14.6	0.3	1.9	2	0	0	2	2	2	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF1192	PF06698.6	gi|124027587|ref|YP_001012907.1|	-	0.0061	16.3	1.6	0.0061	16.3	1.1	2.3	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1192)
HTH_27	PF13463.1	gi|124027587|ref|YP_001012907.1|	-	0.0068	16.6	0.1	0.027	14.8	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|124027587|ref|YP_001012907.1|	-	0.0069	16.4	0.0	0.01	15.9	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|124027587|ref|YP_001012907.1|	-	0.0097	15.3	0.6	0.15	11.5	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
Clp_N	PF02861.15	gi|124027587|ref|YP_001012907.1|	-	0.015	15.1	0.2	4.3	7.3	0.0	2.2	2	0	0	2	2	2	0	Clp	amino	terminal	domain
GntR	PF00392.16	gi|124027587|ref|YP_001012907.1|	-	0.019	14.4	1.4	0.025	14.0	0.1	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
DivIC	PF04977.10	gi|124027587|ref|YP_001012907.1|	-	0.029	13.8	0.3	0.067	12.6	0.2	1.5	1	0	0	1	1	1	0	Septum	formation	initiator
Myb_DNA-binding	PF00249.26	gi|124027587|ref|YP_001012907.1|	-	0.036	14.1	0.3	0.1	12.6	0.0	2.0	2	0	0	2	2	1	0	Myb-like	DNA-binding	domain
DUF4140	PF13600.1	gi|124027587|ref|YP_001012907.1|	-	0.037	14.4	3.2	0.29	11.6	0.7	2.1	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Fib_alpha	PF08702.5	gi|124027587|ref|YP_001012907.1|	-	0.043	13.9	0.1	0.087	12.9	0.0	1.4	2	0	0	2	2	1	0	Fibrinogen	alpha/beta	chain	family
DUF4279	PF14106.1	gi|124027587|ref|YP_001012907.1|	-	0.051	13.4	0.3	4.8	7.0	0.2	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4279)
TMF_DNA_bd	PF12329.3	gi|124027587|ref|YP_001012907.1|	-	0.059	13.1	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DivIVA	PF05103.8	gi|124027587|ref|YP_001012907.1|	-	0.061	13.3	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	DivIVA	protein
DUF77	PF01910.12	gi|124027587|ref|YP_001012907.1|	-	0.063	12.9	0.0	0.099	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF77
HTH_23	PF13384.1	gi|124027587|ref|YP_001012907.1|	-	0.069	12.8	0.2	0.23	11.1	0.0	2.0	2	0	0	2	2	1	0	Homeodomain-like	domain
PilJ	PF13675.1	gi|124027587|ref|YP_001012907.1|	-	0.079	13.2	1.6	1.8	8.9	1.1	2.1	1	1	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Matrilin_ccoil	PF10393.4	gi|124027587|ref|YP_001012907.1|	-	0.081	12.2	0.3	0.17	11.3	0.2	1.6	1	0	0	1	1	1	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
IncA	PF04156.9	gi|124027587|ref|YP_001012907.1|	-	0.093	12.3	0.3	0.15	11.6	0.1	1.4	2	0	0	2	2	2	0	IncA	protein
Hemerythrin	PF01814.18	gi|124027587|ref|YP_001012907.1|	-	0.095	12.8	2.9	0.16	12.1	2.0	1.4	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
FeoC	PF09012.5	gi|124027587|ref|YP_001012907.1|	-	0.095	12.4	0.0	0.34	10.6	0.0	1.8	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
DUF3253	PF11625.3	gi|124027587|ref|YP_001012907.1|	-	0.097	12.5	0.2	0.097	12.5	0.2	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3253)
TSC22	PF01166.13	gi|124027587|ref|YP_001012907.1|	-	0.1	12.5	2.6	0.2	11.6	1.8	1.4	1	0	0	1	1	1	0	TSC-22/dip/bun	family
Prefoldin_2	PF01920.15	gi|124027587|ref|YP_001012907.1|	-	0.11	12.2	0.1	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Prefoldin	subunit
Herpes_UL6	PF01763.11	gi|124027587|ref|YP_001012907.1|	-	0.13	10.4	0.0	0.13	10.4	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
PspB	PF06667.7	gi|124027587|ref|YP_001012907.1|	-	0.13	12.2	0.4	0.28	11.1	0.3	1.6	1	0	0	1	1	1	0	Phage	shock	protein	B
DUF1465	PF07323.7	gi|124027587|ref|YP_001012907.1|	-	0.13	11.7	0.8	0.17	11.4	0.5	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1465)
BLOC1_2	PF10046.4	gi|124027587|ref|YP_001012907.1|	-	0.14	12.2	0.0	0.22	11.6	0.0	1.2	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Sigma70_r4	PF04545.11	gi|124027587|ref|YP_001012907.1|	-	0.32	10.3	0.1	0.32	10.3	0.1	2.6	3	0	0	3	3	3	0	Sigma-70,	region	4
Cas_DxTHG	PF09455.5	gi|124027589|ref|YP_001012909.1|	-	4.8e-27	95.1	4.6	1.2e-26	93.7	3.2	1.7	1	1	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
Perilipin	PF03036.11	gi|124027589|ref|YP_001012909.1|	-	0.088	11.6	4.8	0.027	13.3	1.2	1.5	2	0	0	2	2	2	0	Perilipin	family
RAMPs	PF03787.10	gi|124027590|ref|YP_001012910.1|	-	5.1e-22	78.7	0.0	6.7e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	RAMP	superfamily
Cas_Cmr5	PF09701.5	gi|124027591|ref|YP_001012911.1|	-	3.5e-06	27.1	0.0	1.2e-05	25.4	0.0	1.8	2	0	0	2	2	2	1	CRISPR-associated	protein	(Cas_Cmr5)
RAMPs	PF03787.10	gi|124027592|ref|YP_001012912.1|	-	0.0063	16.3	0.0	0.014	15.2	0.0	1.5	1	1	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.10	gi|124027593|ref|YP_001012913.1|	-	5.4e-11	42.7	0.2	3.8e-10	39.9	0.0	2.0	2	0	0	2	2	2	1	RAMP	superfamily
DUF3692	PF12469.3	gi|124027594|ref|YP_001012914.1|	-	3.1e-24	85.4	0.0	9.1e-24	83.9	0.0	1.8	1	0	0	1	1	1	1	CRISPR-associated	protein
Cas_Cmr3	PF09700.5	gi|124027595|ref|YP_001012915.1|	-	1.6e-09	37.6	0.0	0.00034	20.1	0.0	2.2	2	0	0	2	2	2	2	CRISPR-associated	protein	(Cas_Cmr3)
Toxin_13	PF07822.6	gi|124027595|ref|YP_001012915.1|	-	6.5	6.7	8.1	0.63	10.0	0.9	2.5	2	1	1	3	3	3	0	Neurotoxin	B-IV-like	protein
Nol1_Nop2_Fmu	PF01189.12	gi|124027597|ref|YP_001012917.1|	-	5.9e-38	130.8	0.0	8.5e-38	130.3	0.0	1.2	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_26	PF13659.1	gi|124027597|ref|YP_001012917.1|	-	7.9e-12	45.2	0.0	1.6e-11	44.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124027597|ref|YP_001012917.1|	-	2e-08	33.9	0.0	3e-08	33.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PUA	PF01472.15	gi|124027597|ref|YP_001012917.1|	-	2e-08	33.7	0.9	5e-08	32.5	0.6	1.7	1	0	0	1	1	1	1	PUA	domain
Methyltransf_18	PF12847.2	gi|124027597|ref|YP_001012917.1|	-	2.7e-08	34.3	0.0	5.9e-08	33.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|124027597|ref|YP_001012917.1|	-	8.9e-05	22.5	0.0	0.00054	19.9	0.0	2.2	2	1	0	2	2	2	1	FtsJ-like	methyltransferase
Methyltransf_11	PF08241.7	gi|124027597|ref|YP_001012917.1|	-	0.0017	18.8	0.0	0.0067	16.8	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|124027597|ref|YP_001012917.1|	-	0.0019	17.6	0.0	0.0034	16.7	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Ubie_methyltran	PF01209.13	gi|124027597|ref|YP_001012917.1|	-	0.0032	16.6	0.0	0.21	10.6	0.0	2.2	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|124027597|ref|YP_001012917.1|	-	0.0049	16.2	0.0	0.012	15.0	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.1	gi|124027597|ref|YP_001012917.1|	-	0.012	15.2	0.0	0.03	14.0	0.0	1.8	2	1	0	2	2	2	0	Methyltransferase	domain
PCMT	PF01135.14	gi|124027597|ref|YP_001012917.1|	-	0.012	15.1	0.0	0.027	13.9	0.0	1.5	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_12	PF08242.7	gi|124027597|ref|YP_001012917.1|	-	0.015	15.8	0.0	0.037	14.4	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124027597|ref|YP_001012917.1|	-	0.017	15.4	0.0	0.044	14.1	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_24	PF13578.1	gi|124027597|ref|YP_001012917.1|	-	0.059	14.2	0.0	0.58	11.0	0.0	2.3	1	1	0	1	1	1	0	Methyltransferase	domain
CmcI	PF04989.7	gi|124027597|ref|YP_001012917.1|	-	0.14	11.4	0.0	0.27	10.5	0.0	1.4	1	0	0	1	1	1	0	Cephalosporin	hydroxylase
zf-ribbon_3	PF13248.1	gi|124027598|ref|YP_001012918.1|	-	4.5e-06	25.7	2.7	7.4e-06	24.9	1.9	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
PIN	PF01850.16	gi|124027598|ref|YP_001012918.1|	-	6.7e-05	23.2	0.0	0.00016	21.9	0.0	1.6	1	1	0	1	1	1	1	PIN	domain
DZR	PF12773.2	gi|124027598|ref|YP_001012918.1|	-	0.00026	20.7	0.3	0.00042	20.0	0.2	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|124027598|ref|YP_001012918.1|	-	0.00098	18.5	1.9	0.0026	17.2	1.4	1.6	1	1	1	2	2	2	1	zinc-ribbon	domain
PIN_4	PF13638.1	gi|124027598|ref|YP_001012918.1|	-	0.0018	18.4	0.0	0.0039	17.2	0.0	1.6	2	0	0	2	2	2	1	PIN	domain
zf-NADH-PPase	PF09297.6	gi|124027598|ref|YP_001012918.1|	-	0.0036	16.7	2.6	1	8.9	0.3	2.4	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124027598|ref|YP_001012918.1|	-	0.0066	15.7	1.2	3	7.2	0.1	2.5	2	0	0	2	2	2	2	TFIIB	zinc-binding
UPF0278	PF08745.6	gi|124027598|ref|YP_001012918.1|	-	0.017	14.3	0.5	0.043	13.0	0.1	1.7	2	0	0	2	2	2	0	UPF0278	family
Zn-ribbon_8	PF09723.5	gi|124027598|ref|YP_001012918.1|	-	0.021	14.7	3.6	2.2	8.2	0.1	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|124027598|ref|YP_001012918.1|	-	0.023	14.4	0.5	0.83	9.4	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DNA_ligase_ZBD	PF03119.11	gi|124027598|ref|YP_001012918.1|	-	0.039	13.6	5.8	0.082	12.6	0.6	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Rad50_zn_hook	PF04423.9	gi|124027598|ref|YP_001012918.1|	-	0.041	13.3	2.2	0.12	11.9	0.4	2.1	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
zf-C3HC4_3	PF13920.1	gi|124027598|ref|YP_001012918.1|	-	0.049	13.3	0.9	0.074	12.7	0.7	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Nudix_N_2	PF14803.1	gi|124027598|ref|YP_001012918.1|	-	0.099	12.3	3.0	2.1	8.1	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
Prok-RING_1	PF14446.1	gi|124027598|ref|YP_001012918.1|	-	0.12	12.1	0.3	0.19	11.5	0.2	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-C4_Topoisom	PF01396.14	gi|124027598|ref|YP_001012918.1|	-	0.12	11.8	2.2	0.75	9.3	0.1	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Cys_rich_CPCC	PF14206.1	gi|124027598|ref|YP_001012918.1|	-	0.13	11.8	2.5	0.22	11.0	1.7	1.3	1	0	0	1	1	1	0	Cysteine-rich	CPCC
OrfB_Zn_ribbon	PF07282.6	gi|124027598|ref|YP_001012918.1|	-	0.35	10.5	3.4	0.44	10.2	1.2	2.0	2	1	0	2	2	1	0	Putative	transposase	DNA-binding	domain
Ribosomal_L37e	PF01907.14	gi|124027598|ref|YP_001012918.1|	-	0.35	10.7	1.9	0.58	10.0	1.3	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L37e
UPF0547	PF10571.4	gi|124027598|ref|YP_001012918.1|	-	0.42	10.3	3.6	12	5.6	0.2	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Prok-RING_4	PF14447.1	gi|124027598|ref|YP_001012918.1|	-	0.45	10.0	4.6	0.85	9.2	0.2	2.2	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-UDP	PF14569.1	gi|124027598|ref|YP_001012918.1|	-	0.5	10.1	4.7	0.9	9.3	3.3	1.4	1	0	0	1	1	1	0	Zinc-binding	RING-finger
Zn_Tnp_IS1595	PF12760.2	gi|124027598|ref|YP_001012918.1|	-	1.3	8.9	7.6	6.8	6.5	1.1	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
NAD_kinase	PF01513.16	gi|124027600|ref|YP_001012919.1|	-	3.1e-31	108.2	0.1	1.4e-30	106.0	0.0	1.7	1	1	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|124027600|ref|YP_001012919.1|	-	0.013	14.9	0.0	0.024	14.0	0.0	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Met_10	PF02475.11	gi|124027599|ref|YP_001012920.1|	-	3e-41	141.2	0.0	4e-41	140.8	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|124027599|ref|YP_001012920.1|	-	6.6e-08	32.5	0.1	2.1e-07	30.9	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
DNA_methylase	PF00145.12	gi|124027599|ref|YP_001012920.1|	-	0.012	14.7	0.0	0.019	14.0	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
MTS	PF05175.9	gi|124027599|ref|YP_001012920.1|	-	0.02	14.2	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
Nol1_Nop2_Fmu	PF01189.12	gi|124027599|ref|YP_001012920.1|	-	0.048	13.0	0.0	0.072	12.4	0.0	1.2	1	0	0	1	1	1	0	NOL1/NOP2/sun	family
Methyltransf_18	PF12847.2	gi|124027599|ref|YP_001012920.1|	-	0.13	12.8	0.0	0.23	12.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DHH	PF01368.15	gi|124027601|ref|YP_001012921.1|	-	4.3e-06	26.4	0.0	8.1e-05	22.2	0.0	2.5	2	1	0	2	2	2	1	DHH	family
Meth_synt_1	PF08267.7	gi|124027602|ref|YP_001012922.1|	-	1.7e-23	83.3	0.0	3.6e-23	82.3	0.0	1.7	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.13	gi|124027602|ref|YP_001012922.1|	-	6.1e-09	35.3	0.0	2.9e-08	33.0	0.0	1.8	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_2	PF01717.13	gi|124027605|ref|YP_001012925.1|	-	3e-84	282.7	0.0	3.4e-84	282.5	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|124027605|ref|YP_001012925.1|	-	8.4e-27	94.2	0.0	2.1e-22	79.7	0.0	2.1	1	1	1	2	2	2	2	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.12	gi|124027605|ref|YP_001012925.1|	-	7.8e-05	21.7	0.0	0.00059	18.8	0.0	2.0	2	0	0	2	2	2	1	Uroporphyrinogen	decarboxylase	(URO-D)
AICARFT_IMPCHas	PF01808.13	gi|124027606|ref|YP_001012926.1|	-	0.036	13.1	0.0	0.069	12.2	0.0	1.4	1	0	0	1	1	1	0	AICARFT/IMPCHase	bienzyme
TPP_enzyme_C	PF02775.16	gi|124027608|ref|YP_001012928.1|	-	1.4e-22	79.8	0.1	2.3e-22	79.2	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|124027608|ref|YP_001012928.1|	-	0.00048	19.1	0.0	0.00069	18.6	0.0	1.2	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
E1_dh	PF00676.15	gi|124027608|ref|YP_001012928.1|	-	0.0011	17.7	0.1	0.0016	17.2	0.1	1.2	1	0	0	1	1	1	1	Dehydrogenase	E1	component
Redoxin	PF08534.5	gi|124027608|ref|YP_001012928.1|	-	0.12	11.9	0.0	12	5.4	0.0	2.2	1	1	1	2	2	2	0	Redoxin
POR_N	PF01855.14	gi|124027609|ref|YP_001012929.1|	-	1.4e-70	237.4	2.5	1.7e-70	237.1	1.7	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|124027609|ref|YP_001012929.1|	-	3.4e-09	36.6	0.0	8.3e-09	35.4	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|124027609|ref|YP_001012929.1|	-	0.00033	20.1	2.2	0.00076	19.0	1.3	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4	PF00037.22	gi|124027610|ref|YP_001012930.1|	-	2.9e-12	45.6	11.1	1.6e-09	36.9	3.8	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|124027610|ref|YP_001012930.1|	-	5.2e-11	42.7	6.6	7.2e-11	42.3	4.5	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124027610|ref|YP_001012930.1|	-	5.1e-10	38.9	17.9	1.2e-05	24.9	1.1	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124027610|ref|YP_001012930.1|	-	3.3e-08	33.2	8.7	3.3e-07	30.0	6.0	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124027610|ref|YP_001012930.1|	-	7.7e-08	32.9	4.4	3.8e-06	27.5	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|124027610|ref|YP_001012930.1|	-	6.9e-07	29.4	7.9	1.2e-06	28.6	5.5	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124027610|ref|YP_001012930.1|	-	1.7e-06	27.5	9.4	3.6e-05	23.4	3.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124027610|ref|YP_001012930.1|	-	1.8e-06	27.5	12.6	5.6e-06	25.9	3.6	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|124027610|ref|YP_001012930.1|	-	6.1e-05	23.0	5.9	0.00085	19.4	1.0	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|124027610|ref|YP_001012930.1|	-	0.00036	20.4	7.1	0.0023	17.9	1.2	2.0	1	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124027610|ref|YP_001012930.1|	-	0.0017	18.6	5.8	0.011	16.0	0.9	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124027610|ref|YP_001012930.1|	-	0.0057	17.1	8.3	0.067	13.7	2.7	2.5	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|124027610|ref|YP_001012930.1|	-	0.039	14.5	7.9	0.039	14.5	5.5	2.3	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|124027610|ref|YP_001012930.1|	-	0.058	13.8	7.2	0.19	12.1	1.3	2.4	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|124027610|ref|YP_001012930.1|	-	0.059	13.7	4.6	0.059	13.7	3.2	2.2	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
POR	PF01558.13	gi|124027611|ref|YP_001012931.1|	-	7.1e-34	117.1	0.1	8.7e-34	116.8	0.1	1.1	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Torsin	PF06309.6	gi|124027611|ref|YP_001012931.1|	-	0.18	11.7	0.0	6.4	6.6	0.0	2.4	3	0	0	3	3	3	0	Torsin
DUF72	PF01904.13	gi|124027612|ref|YP_001012932.1|	-	4.1e-56	190.3	0.9	4.6e-56	190.1	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
Pab87_oct	PF13969.1	gi|124027612|ref|YP_001012932.1|	-	0.06	13.4	0.0	0.31	11.1	0.0	2.0	1	1	1	2	2	2	0	Pab87	octamerisation	domain
PIN	PF01850.16	gi|124027613|ref|YP_001012933.1|	-	1.9e-08	34.6	0.5	2.2e-08	34.4	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
ImpA-rel_N	PF06812.7	gi|124027613|ref|YP_001012933.1|	-	0.022	14.5	0.5	0.07	12.9	0.3	2.0	1	1	0	1	1	1	0	ImpA-related	N-terminal
PIN_3	PF13470.1	gi|124027613|ref|YP_001012933.1|	-	0.05	14.2	0.1	0.074	13.7	0.0	1.3	1	0	0	1	1	1	0	PIN	domain
Antitoxin-MazE	PF04014.13	gi|124027614|ref|YP_001012934.1|	-	0.001	18.7	0.0	0.0015	18.2	0.0	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
UPF0066	PF01980.11	gi|124027615|ref|YP_001012935.1|	-	2.3e-36	124.3	0.0	3.1e-36	123.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
AFOR_C	PF01314.13	gi|124027616|ref|YP_001012936.1|	-	8.5e-103	343.9	0.0	1e-102	343.7	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|124027616|ref|YP_001012936.1|	-	1.2e-70	236.9	0.2	2.1e-70	236.1	0.0	1.5	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Band_7	PF01145.20	gi|124027617|ref|YP_001012937.1|	-	2.4e-12	47.1	0.3	2.8e-12	46.9	0.2	1.1	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7	PF01145.20	gi|124027618|ref|YP_001012938.1|	-	4.7e-13	49.4	1.2	6.8e-13	48.9	0.8	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|124027618|ref|YP_001012938.1|	-	0.058	12.8	0.0	0.088	12.3	0.0	1.2	1	0	0	1	1	1	0	SPFH	domain-Band	7	family
Rota_NSP3	PF01665.11	gi|124027618|ref|YP_001012938.1|	-	0.14	11.1	0.0	0.18	10.7	0.0	1.1	1	0	0	1	1	1	0	Rotavirus	non-structural	protein	NSP3
DUF4234	PF14018.1	gi|124027619|ref|YP_001012939.1|	-	1.1e-18	66.7	9.4	3.4e-17	61.9	1.5	2.6	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF4234)
Yip1	PF04893.12	gi|124027619|ref|YP_001012939.1|	-	3.1e-06	26.8	3.1	0.022	14.2	0.1	2.3	2	0	0	2	2	2	2	Yip1	domain
DUF3139	PF11337.3	gi|124027619|ref|YP_001012939.1|	-	0.0028	17.9	5.4	1.9	8.7	0.1	3.4	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF3139)
DUF2393	PF09624.5	gi|124027619|ref|YP_001012939.1|	-	0.0071	15.8	5.7	0.13	11.7	0.1	3.2	4	0	0	4	4	4	1	Protein	of	unknown	function	(DUF2393)
DUF4448	PF14610.1	gi|124027619|ref|YP_001012939.1|	-	0.012	15.0	2.2	2.4	7.6	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4448)
MFS_1	PF07690.11	gi|124027619|ref|YP_001012939.1|	-	0.026	13.2	7.0	0.19	10.4	0.2	2.7	2	1	0	2	2	2	0	Major	Facilitator	Superfamily
zf-DHHC	PF01529.15	gi|124027619|ref|YP_001012939.1|	-	1.1	8.5	2.7	13	5.1	2.2	2.4	1	1	1	2	2	2	0	DHHC	palmitoyltransferase
FtsX	PF02687.16	gi|124027619|ref|YP_001012939.1|	-	4.6	7.0	13.5	52	3.6	0.1	3.9	3	1	0	3	3	3	0	FtsX-like	permease	family
Radical_SAM	PF04055.16	gi|124027620|ref|YP_001012940.1|	-	1.3e-28	100.3	0.0	8.5e-28	97.6	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|124027620|ref|YP_001012940.1|	-	2e-12	47.0	1.4	5.7e-12	45.5	0.8	1.9	2	0	0	2	2	2	1	B12	binding	domain
DUF3112	PF11309.3	gi|124027621|ref|YP_001012941.1|	-	0.53	10.0	5.3	0.79	9.5	3.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3112)
Radical_SAM	PF04055.16	gi|124027622|ref|YP_001012942.1|	-	2.3e-19	70.1	0.1	5.2e-18	65.7	0.0	2.2	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|124027622|ref|YP_001012942.1|	-	0.00097	19.0	0.2	0.0032	17.3	0.1	2.0	2	0	0	2	2	2	1	B12	binding	domain
Lipase_GDSL_2	PF13472.1	gi|124027622|ref|YP_001012942.1|	-	0.051	13.6	0.3	0.35	10.9	0.2	2.3	1	1	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
Arch_ATPase	PF01637.13	gi|124027623|ref|YP_001012943.1|	-	5.5e-41	140.7	0.0	6.9e-41	140.4	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|124027623|ref|YP_001012943.1|	-	3.7e-11	43.3	2.0	1.1e-09	38.5	0.7	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124027623|ref|YP_001012943.1|	-	2e-08	34.4	0.0	6.7e-08	32.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
KAP_NTPase	PF07693.9	gi|124027623|ref|YP_001012943.1|	-	7.3e-05	21.8	0.0	0.0022	17.0	0.0	2.1	2	0	0	2	2	2	1	KAP	family	P-loop	domain
AAA	PF00004.24	gi|124027623|ref|YP_001012943.1|	-	0.00023	21.3	0.0	0.00076	19.6	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|124027623|ref|YP_001012943.1|	-	0.00051	20.3	0.0	0.0012	19.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027623|ref|YP_001012943.1|	-	0.0011	18.6	0.9	0.31	10.8	0.6	3.3	1	1	0	1	1	1	1	Part	of	AAA	domain
NACHT	PF05729.7	gi|124027623|ref|YP_001012943.1|	-	0.0012	18.4	0.0	0.0032	17.1	0.0	1.7	1	1	0	1	1	1	1	NACHT	domain
RNA_helicase	PF00910.17	gi|124027623|ref|YP_001012943.1|	-	0.0015	18.6	0.0	0.0031	17.6	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
AAA_5	PF07728.9	gi|124027623|ref|YP_001012943.1|	-	0.0048	16.6	0.0	0.0079	15.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RecA	PF00154.16	gi|124027623|ref|YP_001012943.1|	-	0.006	15.6	0.0	0.0097	15.0	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_17	PF13207.1	gi|124027623|ref|YP_001012943.1|	-	0.0094	16.7	0.2	0.023	15.4	0.1	1.8	2	1	0	2	2	1	1	AAA	domain
AAA_14	PF13173.1	gi|124027623|ref|YP_001012943.1|	-	0.012	15.4	0.0	0.022	14.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|124027623|ref|YP_001012943.1|	-	0.038	13.9	0.0	0.066	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.13	gi|124027623|ref|YP_001012943.1|	-	0.042	13.4	0.0	0.08	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
NTPase_1	PF03266.10	gi|124027623|ref|YP_001012943.1|	-	0.11	12.1	0.0	0.58	9.8	0.0	2.1	1	1	0	1	1	1	0	NTPase
UPF0079	PF02367.12	gi|124027623|ref|YP_001012943.1|	-	0.11	12.1	0.0	0.24	11.0	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
PIF1	PF05970.9	gi|124027623|ref|YP_001012943.1|	-	0.11	11.3	0.0	0.17	10.7	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_33	PF13671.1	gi|124027623|ref|YP_001012943.1|	-	0.13	12.1	0.0	0.3	10.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_32	PF13654.1	gi|124027623|ref|YP_001012943.1|	-	0.21	10.2	0.0	0.28	9.7	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
PIN	PF01850.16	gi|124027624|ref|YP_001012944.1|	-	0.0061	16.8	0.2	0.008	16.5	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
MetW	PF07021.7	gi|124027624|ref|YP_001012944.1|	-	0.13	11.6	0.0	0.15	11.4	0.0	1.1	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Antitoxin-MazE	PF04014.13	gi|124027625|ref|YP_001012945.1|	-	0.0019	17.8	1.4	0.003	17.2	0.4	1.7	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
Lip_prot_lig_C	PF10437.4	gi|124027625|ref|YP_001012945.1|	-	0.097	12.3	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
MFS_1	PF07690.11	gi|124027626|ref|YP_001012946.1|	-	1e-24	86.9	49.1	2.7e-17	62.5	20.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|124027626|ref|YP_001012946.1|	-	5.3e-07	28.5	15.0	1.2e-06	27.4	10.4	1.5	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1_like	PF12832.2	gi|124027626|ref|YP_001012946.1|	-	0.0006	19.5	0.4	0.0022	17.7	0.0	2.2	2	0	0	2	2	2	1	MFS_1	like	family
Aldo_ket_red	PF00248.16	gi|124027628|ref|YP_001012948.1|	-	2.9e-60	203.5	0.0	3.3e-60	203.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_1	PF01402.16	gi|124027628|ref|YP_001012948.1|	-	0.09	12.7	0.6	2.8	7.9	0.1	3.3	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
GATase_6	PF13522.1	gi|124027629|ref|YP_001012949.1|	-	1.4e-11	44.4	0.3	3.7e-11	43.0	0.0	1.7	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
Antibiotic_NAT	PF02522.9	gi|124027629|ref|YP_001012949.1|	-	0.052	12.7	0.0	0.081	12.1	0.0	1.2	1	0	0	1	1	1	0	Aminoglycoside	3-N-acetyltransferase
TetR_C_6	PF13977.1	gi|124027630|ref|YP_001012950.1|	-	0.27	11.2	2.4	1.4	8.9	0.2	2.1	1	1	1	2	2	2	0	Bacterial	transcriptional	repressor
Sua5_yciO_yrdC	PF01300.13	gi|124027632|ref|YP_001012952.1|	-	6.3e-48	162.3	0.0	9.2e-48	161.8	0.0	1.2	1	0	0	1	1	1	1	Telomere	recombination
zf-HYPF	PF07503.7	gi|124027632|ref|YP_001012952.1|	-	4.6e-26	89.9	11.9	2.6e-13	49.1	2.4	2.3	2	0	0	2	2	2	2	HypF	finger
Acylphosphatase	PF00708.13	gi|124027632|ref|YP_001012952.1|	-	2.2e-22	78.9	0.0	3.8e-22	78.2	0.0	1.4	1	0	0	1	1	1	1	Acylphosphatase
Cys_rich_KTR	PF14205.1	gi|124027632|ref|YP_001012952.1|	-	0.58	9.6	3.1	4.8	6.7	0.3	2.6	2	0	0	2	2	2	0	Cysteine-rich	KTR
HupF_HypC	PF01455.13	gi|124027633|ref|YP_001012953.1|	-	6.7e-18	64.4	1.0	9.9e-18	63.9	0.7	1.3	1	0	0	1	1	1	1	HupF/HypC	family
YajC	PF02699.10	gi|124027633|ref|YP_001012953.1|	-	0.035	13.7	2.6	0.39	10.4	0.2	2.4	1	1	2	3	3	3	0	Preprotein	translocase	subunit
tRNA_anti-codon	PF01336.20	gi|124027633|ref|YP_001012953.1|	-	0.05	13.4	0.1	0.072	12.9	0.1	1.4	1	1	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
Cep57_MT_bd	PF06657.8	gi|124027633|ref|YP_001012953.1|	-	0.26	11.2	3.1	0.42	10.5	2.2	1.4	1	0	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
HypD	PF01924.11	gi|124027634|ref|YP_001012954.1|	-	1.8e-128	428.2	0.0	2.1e-128	428.0	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
zf-RING_6	PF14835.1	gi|124027634|ref|YP_001012954.1|	-	0.002	17.8	0.0	0.0047	16.6	0.0	1.6	1	0	0	1	1	1	1	zf-RING	of	BARD1-type	protein
DUF134	PF02001.11	gi|124027635|ref|YP_001012955.1|	-	3.5e-29	100.7	0.0	4.5e-29	100.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF134
Sigma70_r4_2	PF08281.7	gi|124027635|ref|YP_001012955.1|	-	1e-08	34.4	0.1	1.4e-08	34.0	0.1	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.11	gi|124027635|ref|YP_001012955.1|	-	4e-08	32.4	0.0	6.8e-08	31.7	0.0	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_ECF	PF07638.6	gi|124027635|ref|YP_001012955.1|	-	6.1e-05	22.7	0.1	7.4e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	ECF	sigma	factor
HTH_23	PF13384.1	gi|124027635|ref|YP_001012955.1|	-	7.9e-05	22.1	0.1	0.00014	21.4	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_psq	PF05225.11	gi|124027635|ref|YP_001012955.1|	-	0.00041	19.8	0.0	0.00061	19.2	0.0	1.2	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_28	PF13518.1	gi|124027635|ref|YP_001012955.1|	-	0.00044	20.1	0.2	0.00095	19.1	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|124027635|ref|YP_001012955.1|	-	0.00065	19.8	0.5	0.0012	19.0	0.3	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|124027635|ref|YP_001012955.1|	-	0.002	17.9	0.0	0.003	17.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix
HTH_1	PF00126.22	gi|124027635|ref|YP_001012955.1|	-	0.0056	16.3	0.1	0.0079	15.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_17	PF12728.2	gi|124027635|ref|YP_001012955.1|	-	0.0057	16.8	1.3	0.006	16.8	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|124027635|ref|YP_001012955.1|	-	0.0072	15.8	0.0	0.0097	15.4	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027635|ref|YP_001012955.1|	-	0.011	15.0	0.0	0.017	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|124027635|ref|YP_001012955.1|	-	0.015	14.9	0.0	0.023	14.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
NUMOD1	PF07453.8	gi|124027635|ref|YP_001012955.1|	-	0.045	13.6	0.0	0.063	13.1	0.0	1.2	1	0	0	1	1	1	0	NUMOD1	domain
HTH_8	PF02954.14	gi|124027635|ref|YP_001012955.1|	-	0.1	12.1	0.0	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_7	PF02796.10	gi|124027635|ref|YP_001012955.1|	-	0.4	10.5	0.0	0.4	10.5	0.0	1.9	2	1	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
Fer4	PF00037.22	gi|124027636|ref|YP_001012956.1|	-	2e-15	55.6	23.7	6.9e-09	34.9	1.6	4.5	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124027636|ref|YP_001012956.1|	-	1.9e-09	37.1	23.4	9.5e-08	31.7	7.3	3.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124027636|ref|YP_001012956.1|	-	6.9e-09	35.8	12.9	0.00029	21.0	0.0	3.6	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124027636|ref|YP_001012956.1|	-	1.4e-08	34.4	6.5	1.4e-08	34.4	4.5	2.7	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124027636|ref|YP_001012956.1|	-	2.7e-08	34.0	19.6	4.3e-05	23.8	0.1	3.8	3	2	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027636|ref|YP_001012956.1|	-	3.8e-07	29.6	10.1	1.6e-06	27.6	0.7	3.8	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|124027636|ref|YP_001012956.1|	-	4.1e-06	26.7	22.4	1.3e-05	25.1	8.3	3.4	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124027636|ref|YP_001012956.1|	-	6.3e-05	23.6	23.6	0.0014	19.3	1.4	3.9	3	1	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|124027636|ref|YP_001012956.1|	-	0.00025	20.7	3.0	0.00025	20.7	2.1	4.1	5	0	0	5	5	5	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|124027636|ref|YP_001012956.1|	-	0.0021	18.4	14.1	0.14	12.5	2.4	2.9	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|124027636|ref|YP_001012956.1|	-	0.0024	18.4	1.2	0.0024	18.4	0.8	3.6	4	0	0	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|124027636|ref|YP_001012956.1|	-	0.026	14.8	3.6	0.026	14.8	2.5	4.1	5	0	0	5	5	3	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|124027636|ref|YP_001012956.1|	-	0.041	14.4	6.6	0.041	14.4	4.6	4.2	4	0	0	4	4	3	0	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|124027636|ref|YP_001012956.1|	-	0.099	13.0	17.5	0.26	11.7	0.4	4.1	4	0	0	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|124027636|ref|YP_001012956.1|	-	0.22	11.4	8.4	0.028	14.3	1.2	2.7	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Radical_SAM	PF04055.16	gi|124027638|ref|YP_001012958.1|	-	0.14	12.3	0.0	0.25	11.5	0.0	1.3	1	0	0	1	1	1	0	Radical	SAM	superfamily
PIN	PF01850.16	gi|124027639|ref|YP_001012959.1|	-	1.1e-17	64.5	1.1	1.2e-17	64.3	0.8	1.0	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|124027640|ref|YP_001012960.1|	-	3.2e-12	45.8	1.7	4.8e-12	45.3	1.2	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF1905	PF08922.6	gi|124027640|ref|YP_001012960.1|	-	0.019	14.5	0.1	0.029	13.9	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
Nol1_Nop2_Fmu	PF01189.12	gi|124027641|ref|YP_001012961.1|	-	1.8e-26	93.1	0.0	2.7e-26	92.6	0.0	1.2	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_26	PF13659.1	gi|124027641|ref|YP_001012961.1|	-	5.5e-07	29.6	0.1	1.8e-06	27.9	0.1	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124027641|ref|YP_001012961.1|	-	0.051	13.1	0.0	0.099	12.2	0.0	1.4	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Glycos_transf_2	PF00535.21	gi|124027642|ref|YP_001012962.1|	-	1.1e-23	83.7	0.0	1.5e-23	83.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|124027642|ref|YP_001012962.1|	-	3.2e-14	53.2	0.0	4.5e-14	52.7	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.2	gi|124027642|ref|YP_001012962.1|	-	4.1e-06	26.9	0.0	5.8e-06	26.4	0.0	1.3	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
Glyco_transf_21	PF13506.1	gi|124027642|ref|YP_001012962.1|	-	0.00039	19.7	0.0	0.00071	18.8	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.1	gi|124027642|ref|YP_001012962.1|	-	0.13	12.5	0.0	0.24	11.7	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Cas_APE2256	PF09651.5	gi|124027643|ref|YP_001012963.1|	-	1e-35	122.3	0.0	1.7e-35	121.7	0.0	1.3	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
PTH2	PF01981.11	gi|124027644|ref|YP_001012964.1|	-	3.9e-46	155.5	0.0	4.3e-46	155.3	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
DUF2396	PF09654.5	gi|124027644|ref|YP_001012964.1|	-	0.0079	16.1	0.0	0.0091	15.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2396)
DUF553	PF04473.7	gi|124027645|ref|YP_001012965.1|	-	2.3e-30	104.8	0.0	1.1e-29	102.6	0.0	2.0	1	1	0	1	1	1	1	Transglutaminase-like	domain
Transglut_core	PF01841.14	gi|124027645|ref|YP_001012965.1|	-	2.5e-06	27.6	0.1	8.7e-06	25.9	0.0	1.9	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
FH2	PF02181.18	gi|124027645|ref|YP_001012965.1|	-	0.086	11.7	1.2	0.14	10.9	0.2	1.8	2	0	0	2	2	2	0	Formin	Homology	2	Domain
DUF1464	PF07318.7	gi|124027646|ref|YP_001012966.1|	-	7.3e-136	452.4	0.8	8.4e-136	452.2	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1464)
PALP	PF00291.20	gi|124027647|ref|YP_001012967.1|	-	6.2e-66	222.7	0.1	7.8e-66	222.3	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
zf-C4_Topoisom	PF01396.14	gi|124027647|ref|YP_001012967.1|	-	0.081	12.4	2.9	0.17	11.4	0.2	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Rubredoxin	PF00301.15	gi|124027647|ref|YP_001012967.1|	-	0.4	10.6	7.3	2.9	7.8	0.7	2.4	2	0	0	2	2	2	0	Rubredoxin
zf-C2H2_4	PF13894.1	gi|124027647|ref|YP_001012967.1|	-	1.2	9.6	3.3	12	6.4	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Sua5_yciO_yrdC	PF01300.13	gi|124027648|ref|YP_001012968.1|	-	2.2e-55	186.6	0.0	2.6e-55	186.4	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
Thioredoxin	PF00085.15	gi|124027649|ref|YP_001012969.1|	-	7.5e-11	41.6	0.0	1e-10	41.1	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_4	PF13462.1	gi|124027649|ref|YP_001012969.1|	-	1.2e-05	25.3	0.3	2.7e-05	24.2	0.2	1.5	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|124027649|ref|YP_001012969.1|	-	2.6e-05	23.9	0.4	5.5e-05	22.9	0.3	1.5	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|124027649|ref|YP_001012969.1|	-	5.1e-05	23.4	0.3	0.00036	20.7	0.2	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Glutaredoxin	PF00462.19	gi|124027649|ref|YP_001012969.1|	-	5.4e-05	23.1	1.0	8e-05	22.5	0.2	1.7	2	0	0	2	2	2	1	Glutaredoxin
Thioredoxin_8	PF13905.1	gi|124027649|ref|YP_001012969.1|	-	0.018	15.1	0.0	0.05	13.7	0.0	1.8	1	1	0	1	1	1	0	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|124027649|ref|YP_001012969.1|	-	0.027	14.4	0.2	0.063	13.3	0.0	1.7	2	0	0	2	2	2	0	Thioredoxin-like
DIM1	PF02966.11	gi|124027649|ref|YP_001012969.1|	-	0.056	12.9	0.0	0.064	12.7	0.0	1.3	1	0	0	1	1	1	0	Mitosis	protein	DIM1
Thioredoxin_9	PF14595.1	gi|124027649|ref|YP_001012969.1|	-	0.11	12.0	0.0	0.14	11.6	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin
LysE	PF01810.13	gi|124027650|ref|YP_001012970.1|	-	7.3e-07	28.6	20.1	1.6e-06	27.5	14.0	1.6	1	1	0	1	1	1	1	LysE	type	translocator
Peptidase_M48	PF01435.13	gi|124027651|ref|YP_001012971.1|	-	1.1e-42	146.0	0.0	1.7e-42	145.5	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
DUF1469	PF07332.6	gi|124027651|ref|YP_001012971.1|	-	0.0022	17.7	1.8	0.0022	17.7	1.3	3.2	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF1469)
Peptidase_M56	PF05569.6	gi|124027651|ref|YP_001012971.1|	-	0.038	12.9	0.0	0.087	11.7	0.0	1.7	1	0	0	1	1	1	0	BlaR1	peptidase	M56
HD	PF01966.17	gi|124027653|ref|YP_001012973.1|	-	1.2e-06	28.4	1.2	2.8e-06	27.3	0.2	2.2	2	1	0	2	2	2	1	HD	domain
Ribosomal_S26e	PF01283.14	gi|124027654|ref|YP_001012974.1|	-	5.4e-34	116.8	2.5	6.2e-34	116.6	1.8	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
zf-C2HC_2	PF13913.1	gi|124027654|ref|YP_001012974.1|	-	0.033	13.8	0.7	0.1	12.3	0.2	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DZR	PF12773.2	gi|124027654|ref|YP_001012974.1|	-	0.066	13.0	0.9	0.47	10.3	0.1	2.0	2	0	0	2	2	2	0	Double	zinc	ribbon
Sgf11	PF08209.6	gi|124027654|ref|YP_001012974.1|	-	0.095	12.0	0.2	0.095	12.0	0.2	2.0	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF164	PF02591.10	gi|124027654|ref|YP_001012974.1|	-	0.1	12.4	2.7	0.14	11.9	0.1	2.3	2	1	0	2	2	2	0	Putative	zinc	ribbon	domain
DUF35_N	PF12172.3	gi|124027654|ref|YP_001012974.1|	-	0.23	11.4	0.4	0.23	11.4	0.3	1.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-dskA_traR	PF01258.12	gi|124027654|ref|YP_001012974.1|	-	0.37	10.5	3.4	5.3	6.8	0.1	2.4	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Methyltrn_RNA_2	PF04013.7	gi|124027655|ref|YP_001012975.1|	-	4.2e-05	23.1	0.0	0.00011	21.8	0.0	1.6	1	1	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
RHH_1	PF01402.16	gi|124027656|ref|YP_001012976.1|	-	6.5e-06	25.8	1.4	9e-06	25.3	1.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|124027656|ref|YP_001012976.1|	-	0.00055	19.5	1.1	0.0007	19.2	0.7	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
RHH_4	PF13467.1	gi|124027656|ref|YP_001012976.1|	-	0.0079	16.0	0.0	0.01	15.7	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
RepB-RCR_reg	PF10723.4	gi|124027656|ref|YP_001012976.1|	-	0.044	13.5	0.1	0.061	13.0	0.1	1.2	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
Peptidase_M3_N	PF08439.5	gi|124027656|ref|YP_001012976.1|	-	0.058	13.4	0.0	0.07	13.1	0.0	1.1	1	0	0	1	1	1	0	Oligopeptidase	F
PSK_trans_fac	PF07704.6	gi|124027656|ref|YP_001012976.1|	-	0.068	13.8	0.1	0.077	13.6	0.0	1.2	1	0	0	1	1	1	0	Rv0623-like	transcription	factor
FCH	PF00611.18	gi|124027656|ref|YP_001012976.1|	-	0.077	13.1	0.1	0.087	13.0	0.1	1.2	1	0	0	1	1	1	0	Fes/CIP4,	and	EFC/F-BAR	homology	domain
tRNA-synt_2b	PF00587.20	gi|124027657|ref|YP_001012977.1|	-	3.4e-28	98.3	0.5	8.2e-26	90.6	0.1	2.2	2	0	0	2	2	2	2	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|124027657|ref|YP_001012977.1|	-	1.8e-16	59.8	1.5	3.8e-16	58.8	0.6	1.9	2	0	0	2	2	2	1	Anticodon	binding	domain
TIR_2	PF13676.1	gi|124027657|ref|YP_001012977.1|	-	0.044	13.9	0.5	0.51	10.5	0.0	2.8	3	0	0	3	3	3	0	TIR	domain
tRNA-synt_2	PF00152.15	gi|124027657|ref|YP_001012977.1|	-	0.076	11.7	0.5	0.39	9.4	0.3	1.9	1	1	0	1	1	1	0	tRNA	synthetases	class	II	(D,	K	and	N)
TMP-TENI	PF02581.12	gi|124027657|ref|YP_001012977.1|	-	0.09	11.8	0.0	2.3	7.3	0.0	2.6	2	1	1	3	3	3	0	Thiamine	monophosphate	synthase/TENI
ATP-synt_C	PF00137.16	gi|124027658|ref|YP_001012978.1|	-	6.3e-21	74.0	13.9	6.3e-21	74.0	9.6	2.1	2	1	1	3	3	3	1	ATP	synthase	subunit	C
DUF2938	PF11158.3	gi|124027658|ref|YP_001012978.1|	-	0.041	13.2	2.5	0.052	12.8	1.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2938)
CytB6-F_Fe-S	PF08802.5	gi|124027658|ref|YP_001012978.1|	-	0.72	9.9	3.1	2.5	8.1	2.1	2.0	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	Fe-S	subunit
DUF2976	PF11190.3	gi|124027658|ref|YP_001012978.1|	-	4.3	6.9	6.0	14	5.2	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2976)
tRNA_deacylase	PF04414.7	gi|124027659|ref|YP_001012979.1|	-	7.6e-56	188.6	0.0	9e-56	188.3	0.0	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
ATP-synt_D	PF01813.12	gi|124027660|ref|YP_001012980.1|	-	9.9e-46	155.7	10.4	1.1e-45	155.5	7.2	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DASH_Duo1	PF08651.5	gi|124027660|ref|YP_001012980.1|	-	0.029	13.9	1.3	1.2	8.7	0.2	2.7	3	0	0	3	3	3	0	DASH	complex	subunit	Duo1
Caps_synth_GfcC	PF06251.6	gi|124027660|ref|YP_001012980.1|	-	0.073	12.2	0.0	0.46	9.6	0.0	1.9	2	0	0	2	2	2	0	Capsule	biosynthesis	GfcC
DNA_pol3_beta_2	PF02767.11	gi|124027660|ref|YP_001012980.1|	-	0.092	12.7	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	DNA	polymerase	III	beta	subunit,	central	domain
Radial_spoke_3	PF06098.6	gi|124027660|ref|YP_001012980.1|	-	0.42	9.5	5.1	0.088	11.8	1.1	1.6	2	0	0	2	2	2	0	Radial	spoke	protein	3
DUF3583	PF12126.3	gi|124027660|ref|YP_001012980.1|	-	0.52	9.3	2.5	1.1	8.2	1.7	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3583)
ATP-synt_ab	PF00006.20	gi|124027661|ref|YP_001012981.1|	-	2.3e-62	210.3	0.0	3e-62	209.9	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|124027661|ref|YP_001012981.1|	-	2.4e-19	69.8	0.3	4e-19	69.1	0.2	1.3	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|124027661|ref|YP_001012981.1|	-	1.2e-10	41.4	1.4	2.5e-10	40.4	1.0	1.6	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.5	gi|124027661|ref|YP_001012981.1|	-	0.00078	19.3	2.3	0.0016	18.2	1.6	1.6	1	0	0	1	1	1	1	HAS	barrel	domain
ATP-synt_ab	PF00006.20	gi|124027662|ref|YP_001012982.1|	-	2.4e-95	318.1	0.0	3.2e-95	317.6	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|124027662|ref|YP_001012982.1|	-	1.1e-16	61.2	2.6	2.5e-16	60.1	1.8	1.6	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|124027662|ref|YP_001012982.1|	-	1.6e-12	47.4	5.4	2.6e-12	46.7	2.4	2.5	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.1	gi|124027662|ref|YP_001012982.1|	-	0.0027	17.8	0.6	0.028	14.5	0.0	2.6	3	1	0	3	3	3	1	AAA	domain
AAA_23	PF13476.1	gi|124027662|ref|YP_001012982.1|	-	0.07	13.4	4.4	0.048	13.9	0.6	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|124027662|ref|YP_001012982.1|	-	0.18	11.7	0.7	22	4.9	0.0	3.1	3	0	0	3	3	3	0	AAA	ATPase	domain
vATP-synt_E	PF01991.13	gi|124027663|ref|YP_001012983.1|	-	1.3e-10	40.8	9.5	1.8e-10	40.4	6.6	1.1	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
FliH	PF02108.11	gi|124027663|ref|YP_001012983.1|	-	5.1e-05	23.1	4.4	0.022	14.6	0.3	2.2	1	1	1	2	2	2	2	Flagellar	assembly	protein	FliH
Serine_rich	PF08824.5	gi|124027663|ref|YP_001012983.1|	-	0.01	15.5	1.8	0.031	14.0	1.0	1.8	1	1	1	2	2	2	0	Serine	rich	protein	interaction	domain
YdjC	PF04794.7	gi|124027663|ref|YP_001012983.1|	-	0.016	14.7	0.2	0.024	14.0	0.1	1.4	1	0	0	1	1	1	0	YdjC-like	protein
GnsAB	PF08178.6	gi|124027663|ref|YP_001012983.1|	-	0.12	12.0	0.1	0.33	10.6	0.1	1.8	1	0	0	1	1	1	0	GnsA/GnsB	family
CBFD_NFYB_HMF	PF00808.18	gi|124027663|ref|YP_001012983.1|	-	0.12	12.3	2.3	1.7	8.7	0.0	2.8	2	2	0	2	2	2	0	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Tox-ODYAM1	PF15642.1	gi|124027663|ref|YP_001012983.1|	-	0.15	10.6	5.9	0.2	10.2	4.1	1.1	1	0	0	1	1	1	0	Toxin	in	Odyssella	and	Amoebophilus
Apolipoprotein	PF01442.13	gi|124027663|ref|YP_001012983.1|	-	0.27	10.7	12.6	0.089	12.2	6.4	1.8	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
CorA	PF01544.13	gi|124027663|ref|YP_001012983.1|	-	0.3	10.0	3.1	0.44	9.5	2.1	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
YbaB_DNA_bd	PF02575.11	gi|124027663|ref|YP_001012983.1|	-	0.68	9.8	3.9	1.1	9.2	0.2	2.5	1	1	2	3	3	3	0	YbaB/EbfC	DNA-binding	family
Mitofilin	PF09731.4	gi|124027663|ref|YP_001012983.1|	-	1.1	7.8	11.5	1.4	7.4	8.0	1.1	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
ATP-synt_B	PF00430.13	gi|124027663|ref|YP_001012983.1|	-	1.2	8.9	13.6	0.65	9.8	8.0	1.7	2	0	0	2	2	2	0	ATP	synthase	B/B'	CF(0)
DNA_primase_lrg	PF04104.9	gi|124027663|ref|YP_001012983.1|	-	2.3	7.4	3.9	3.8	6.6	2.4	1.4	1	1	0	1	1	1	0	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
OmpH	PF03938.9	gi|124027663|ref|YP_001012983.1|	-	3.3	7.6	9.5	5.4	6.9	6.6	1.5	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
V-ATPase_G	PF03179.10	gi|124027663|ref|YP_001012983.1|	-	4.6	7.5	13.7	9.6	6.5	9.3	1.8	1	1	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
ATP-synt_F	PF01990.12	gi|124027664|ref|YP_001012984.1|	-	2.2e-14	53.6	0.0	2.5e-14	53.4	0.0	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
CoA_transf_3	PF02515.12	gi|124027664|ref|YP_001012984.1|	-	0.016	14.4	0.0	0.021	14.0	0.0	1.1	1	0	0	1	1	1	0	CoA-transferase	family	III
V_ATPase_I	PF01496.14	gi|124027665|ref|YP_001012985.1|	-	9.6e-47	159.3	0.0	5.4e-45	153.5	0.0	2.2	1	1	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
ICL	PF00463.16	gi|124027665|ref|YP_001012985.1|	-	0.036	12.2	0.0	0.056	11.6	0.0	1.2	1	0	0	1	1	1	0	Isocitrate	lyase	family
Uds1	PF15456.1	gi|124027665|ref|YP_001012985.1|	-	0.076	13.0	0.8	4.3	7.3	0.1	2.4	2	0	0	2	2	2	0	Up-regulated	During	Septation
DegS	PF05384.6	gi|124027665|ref|YP_001012985.1|	-	0.096	11.8	0.6	1.3	8.2	0.0	2.4	2	1	0	2	2	2	0	Sensor	protein	DegS
Apolipoprotein	PF01442.13	gi|124027665|ref|YP_001012985.1|	-	0.13	11.7	2.7	0.099	12.1	0.5	1.7	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
DUF1886	PF09171.5	gi|124027666|ref|YP_001012986.1|	-	0.00031	19.8	0.2	0.0006	18.9	0.2	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1886)
DUF401	PF04165.7	gi|124027667|ref|YP_001012987.1|	-	9.6e-62	209.2	17.0	1.2e-61	208.8	11.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF401)
MFS_1	PF07690.11	gi|124027668|ref|YP_001012988.1|	-	5.6e-36	123.9	54.6	1.6e-25	89.6	17.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|124027668|ref|YP_001012988.1|	-	0.00025	20.7	11.2	0.036	13.8	0.2	3.9	4	0	0	4	4	4	2	MFS_1	like	family
MFS_3	PF05977.8	gi|124027668|ref|YP_001012988.1|	-	5.1	5.0	35.1	10	4.0	23.8	1.7	1	1	1	2	2	2	0	Transmembrane	secretion	effector
Aldolase_II	PF00596.16	gi|124027669|ref|YP_001012989.1|	-	1.8e-43	148.3	0.1	2e-43	148.1	0.1	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
DUF2398	PF09661.5	gi|124027669|ref|YP_001012989.1|	-	0.051	12.3	0.3	0.15	10.7	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2398)
DUF2893	PF11459.3	gi|124027669|ref|YP_001012989.1|	-	0.12	12.1	0.7	6	6.7	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknwon	function	(DUF2893)
BTAD	PF03704.12	gi|124027669|ref|YP_001012989.1|	-	0.55	10.5	3.9	3.4	7.9	0.1	2.2	2	0	0	2	2	2	0	Bacterial	transcriptional	activator	domain
Zn-ribbon_8	PF09723.5	gi|124027670|ref|YP_001012990.1|	-	0.01	15.7	0.9	0.18	11.7	0.0	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
C1_3	PF07649.7	gi|124027670|ref|YP_001012990.1|	-	0.048	13.7	2.7	0.098	12.7	0.2	2.1	2	0	0	2	2	2	0	C1-like	domain
zinc_ribbon_2	PF13240.1	gi|124027670|ref|YP_001012990.1|	-	0.057	12.9	1.8	1.7	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|124027670|ref|YP_001012990.1|	-	0.064	13.2	0.4	5.4	7.0	0.0	2.4	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-ribbon_3	PF13248.1	gi|124027670|ref|YP_001012990.1|	-	0.068	12.4	3.4	3.2	7.0	0.7	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-Sec23_Sec24	PF04810.10	gi|124027670|ref|YP_001012990.1|	-	0.1	12.2	1.5	4	7.0	0.1	2.2	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Auto_anti-p27	PF06677.7	gi|124027670|ref|YP_001012990.1|	-	0.18	11.5	1.0	4.7	7.0	0.2	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Nudix_N_2	PF14803.1	gi|124027670|ref|YP_001012990.1|	-	0.46	10.2	2.7	9.5	6.0	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
ADK_lid	PF05191.9	gi|124027670|ref|YP_001012990.1|	-	0.66	9.6	2.5	6.5	6.5	0.1	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
TF_Zn_Ribbon	PF08271.7	gi|124027670|ref|YP_001012990.1|	-	0.71	9.2	2.9	8.1	5.8	0.1	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF1610	PF07754.6	gi|124027670|ref|YP_001012990.1|	-	1.4	9.0	4.4	5	7.3	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Desulfoferrod_N	PF06397.7	gi|124027670|ref|YP_001012990.1|	-	2.2	7.7	5.5	0.32	10.4	0.5	1.9	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
DNA_ligase_ZBD	PF03119.11	gi|124027670|ref|YP_001012990.1|	-	4.8	6.9	8.2	0.19	11.4	0.4	2.5	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
UPF0547	PF10571.4	gi|124027670|ref|YP_001012990.1|	-	8.7	6.1	8.3	7.1	6.4	0.8	2.4	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
AIRS	PF00586.19	gi|124027671|ref|YP_001012991.1|	-	3.8e-16	59.1	0.8	9.4e-16	57.8	0.6	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Inositol_P	PF00459.20	gi|124027672|ref|YP_001012992.1|	-	2.5e-24	86.0	0.2	2.9e-24	85.8	0.1	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.15	gi|124027672|ref|YP_001012992.1|	-	0.00019	20.4	0.0	0.00027	19.8	0.0	1.2	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase
MauE	PF07291.6	gi|124027672|ref|YP_001012992.1|	-	0.014	14.9	0.1	0.027	14.1	0.1	1.5	1	0	0	1	1	1	0	Methylamine	utilisation	protein	MauE
DUF2797	PF10977.3	gi|124027673|ref|YP_001012993.1|	-	0.005	16.5	0.2	0.0068	16.0	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2797)
zf-C3Hc3H	PF13891.1	gi|124027673|ref|YP_001012993.1|	-	0.14	12.2	0.1	0.24	11.4	0.1	1.3	1	0	0	1	1	1	0	Potential	DNA-binding	domain
PRC	PF05239.11	gi|124027674|ref|YP_001012994.1|	-	0.0019	18.0	2.2	0.0032	17.2	1.5	1.3	1	0	0	1	1	1	1	PRC-barrel	domain
DUF883	PF05957.8	gi|124027674|ref|YP_001012994.1|	-	0.04	14.3	5.4	0.047	14.0	0.4	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
APG5	PF04106.7	gi|124027674|ref|YP_001012994.1|	-	0.059	12.8	0.1	0.12	11.8	0.0	1.5	2	0	0	2	2	2	0	Autophagy	protein	Apg5
GvpG	PF05120.7	gi|124027674|ref|YP_001012994.1|	-	0.073	12.8	0.7	0.78	9.5	0.0	2.7	1	1	2	3	3	3	0	Gas	vesicle	protein	G
Fib_alpha	PF08702.5	gi|124027674|ref|YP_001012994.1|	-	0.11	12.5	3.6	0.24	11.5	2.3	1.7	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
HHH_8	PF14716.1	gi|124027674|ref|YP_001012994.1|	-	0.19	11.9	2.1	3.4	7.9	0.1	3.0	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
Lumazine_bd	PF12870.2	gi|124027674|ref|YP_001012994.1|	-	0.25	11.3	7.8	0.18	11.8	0.2	2.7	2	1	1	3	3	3	0	Lumazine-binding	domain
ISG65-75	PF11727.3	gi|124027674|ref|YP_001012994.1|	-	0.45	9.5	13.8	0.11	11.5	7.0	1.7	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
Syntaxin_2	PF14523.1	gi|124027674|ref|YP_001012994.1|	-	1.6	8.8	6.1	1.1	9.2	1.8	2.4	1	1	1	2	2	2	0	Syntaxin-like	protein
APG6	PF04111.7	gi|124027674|ref|YP_001012994.1|	-	3.2	6.7	8.0	4.8	6.1	5.5	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
CR6_interact	PF10147.4	gi|124027674|ref|YP_001012994.1|	-	9.1	5.5	11.9	88	2.3	8.2	2.1	1	1	0	1	1	1	0	Growth	arrest	and	DNA-damage-inducible	proteins-interacting	protein	1
HemN_C	PF06969.11	gi|124027675|ref|YP_001012995.1|	-	0.0078	16.2	0.1	0.023	14.7	0.1	1.9	1	0	0	1	1	1	1	HemN	C-terminal	domain
Aldo_ket_red	PF00248.16	gi|124027676|ref|YP_001012996.1|	-	5.6e-57	192.7	0.0	6.4e-57	192.5	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
AAA	PF00004.24	gi|124027677|ref|YP_001012997.1|	-	5e-39	133.5	0.0	1.2e-38	132.3	0.0	1.6	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.13	gi|124027677|ref|YP_001012997.1|	-	5.4e-14	51.8	2.5	4.9e-13	48.7	1.5	2.3	2	0	0	2	2	2	1	MIT	(microtubule	interacting	and	transport)	domain
AAA_22	PF13401.1	gi|124027677|ref|YP_001012997.1|	-	6.4e-08	32.7	0.0	4.5e-07	30.0	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|124027677|ref|YP_001012997.1|	-	4.3e-07	30.0	0.3	0.035	14.0	0.0	3.3	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_2	PF07724.9	gi|124027677|ref|YP_001012997.1|	-	9e-07	28.9	0.0	1.6e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_14	PF13173.1	gi|124027677|ref|YP_001012997.1|	-	1.2e-06	28.4	0.0	2.3e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|124027677|ref|YP_001012997.1|	-	7.9e-06	25.6	0.1	7.2e-05	22.5	0.1	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Vps4_C	PF09336.5	gi|124027677|ref|YP_001012997.1|	-	8.4e-06	25.5	0.0	3.2e-05	23.7	0.0	2.0	2	0	0	2	2	1	1	Vps4	C	terminal	oligomerisation	domain
RuvB_N	PF05496.7	gi|124027677|ref|YP_001012997.1|	-	1.4e-05	24.2	0.0	0.00012	21.1	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
TPR_11	PF13414.1	gi|124027677|ref|YP_001012997.1|	-	1.7e-05	24.3	0.8	4.6e-05	22.9	0.2	2.0	2	0	0	2	2	1	1	TPR	repeat
AAA_25	PF13481.1	gi|124027677|ref|YP_001012997.1|	-	2.9e-05	23.5	1.4	0.029	13.7	0.1	3.1	3	1	1	4	4	3	2	AAA	domain
AAA_33	PF13671.1	gi|124027677|ref|YP_001012997.1|	-	3.1e-05	23.8	0.0	0.00013	21.9	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124027677|ref|YP_001012997.1|	-	3.8e-05	24.5	0.2	0.00019	22.2	0.0	2.5	2	1	0	2	2	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|124027677|ref|YP_001012997.1|	-	0.00033	20.4	0.0	0.31	10.7	0.0	2.4	1	1	1	2	2	2	2	Archaeal	ATPase
Zeta_toxin	PF06414.7	gi|124027677|ref|YP_001012997.1|	-	0.00085	18.4	0.0	0.002	17.2	0.0	1.7	1	0	0	1	1	1	1	Zeta	toxin
IstB_IS21	PF01695.12	gi|124027677|ref|YP_001012997.1|	-	0.0015	17.9	0.0	0.0028	17.0	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|124027677|ref|YP_001012997.1|	-	0.0016	17.9	0.1	1.8	7.8	0.0	3.1	3	0	0	3	3	3	1	AAA-like	domain
TPR_12	PF13424.1	gi|124027677|ref|YP_001012997.1|	-	0.0018	18.1	0.3	0.0055	16.6	0.2	1.8	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|124027677|ref|YP_001012997.1|	-	0.002	18.6	0.6	0.0099	16.4	0.0	2.6	2	0	0	2	2	1	1	Tetratricopeptide	repeat
Mg_chelatase	PF01078.16	gi|124027677|ref|YP_001012997.1|	-	0.0025	17.0	0.1	0.0058	15.8	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
TIP49	PF06068.8	gi|124027677|ref|YP_001012997.1|	-	0.0048	15.6	0.0	0.0086	14.8	0.0	1.3	1	0	0	1	1	1	1	TIP49	C-terminus
AAA_28	PF13521.1	gi|124027677|ref|YP_001012997.1|	-	0.0082	16.1	0.0	0.03	14.2	0.0	2.0	2	1	0	2	2	1	1	AAA	domain
KaiC	PF06745.8	gi|124027677|ref|YP_001012997.1|	-	0.015	14.4	0.3	3.4	6.7	0.0	2.6	2	1	1	3	3	3	0	KaiC
NACHT	PF05729.7	gi|124027677|ref|YP_001012997.1|	-	0.016	14.8	0.0	0.044	13.4	0.0	1.7	2	0	0	2	2	1	0	NACHT	domain
ResIII	PF04851.10	gi|124027677|ref|YP_001012997.1|	-	0.017	14.9	0.0	0.037	13.8	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
Viral_helicase1	PF01443.13	gi|124027677|ref|YP_001012997.1|	-	0.018	14.5	0.0	0.026	14.0	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_19	PF13245.1	gi|124027677|ref|YP_001012997.1|	-	0.02	14.6	0.0	0.053	13.2	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
ABC_tran	PF00005.22	gi|124027677|ref|YP_001012997.1|	-	0.022	15.0	0.0	0.059	13.6	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.17	gi|124027677|ref|YP_001012997.1|	-	0.023	14.8	0.0	0.06	13.5	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
TPR_16	PF13432.1	gi|124027677|ref|YP_001012997.1|	-	0.024	15.2	0.3	0.15	12.7	0.1	2.5	1	1	0	1	1	1	0	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|124027677|ref|YP_001012997.1|	-	0.032	14.6	0.1	0.11	12.9	0.1	2.0	1	0	0	1	1	1	0	Tetratricopeptide	repeat
AAA_18	PF13238.1	gi|124027677|ref|YP_001012997.1|	-	0.034	14.4	0.0	0.12	12.6	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
AAA_24	PF13479.1	gi|124027677|ref|YP_001012997.1|	-	0.035	13.7	0.0	0.075	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TPR_2	PF07719.12	gi|124027677|ref|YP_001012997.1|	-	0.047	13.6	3.9	0.28	11.1	0.1	3.5	3	1	1	4	4	4	0	Tetratricopeptide	repeat
ATP-synt_ab	PF00006.20	gi|124027677|ref|YP_001012997.1|	-	0.067	12.6	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
TPR_1	PF00515.23	gi|124027677|ref|YP_001012997.1|	-	0.076	12.6	0.4	0.076	12.6	0.3	2.8	4	0	0	4	4	3	0	Tetratricopeptide	repeat
NB-ARC	PF00931.17	gi|124027677|ref|YP_001012997.1|	-	0.13	11.1	0.0	0.21	10.4	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
HGTP_anticodon	PF03129.15	gi|124027678|ref|YP_001012998.1|	-	0.15	11.9	0.0	0.4	10.6	0.0	1.6	2	0	0	2	2	2	0	Anticodon	binding	domain
BPL_LplA_LipB	PF03099.14	gi|124027679|ref|YP_001012999.1|	-	1e-23	83.6	0.0	1.4e-23	83.2	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Pyr_redox_2	PF07992.9	gi|124027680|ref|YP_001013000.1|	-	1.3e-30	106.8	0.0	8.6e-30	104.1	0.0	3.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|124027680|ref|YP_001013000.1|	-	1.8e-22	79.4	6.0	2.7e-17	62.9	0.6	3.5	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|124027680|ref|YP_001013000.1|	-	5.8e-14	51.7	7.8	0.0016	17.4	0.0	4.1	3	1	1	4	4	4	4	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027680|ref|YP_001013000.1|	-	9.1e-14	51.9	0.1	2.2e-09	37.6	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|124027680|ref|YP_001013000.1|	-	4.4e-13	49.2	0.0	3e-12	46.5	0.0	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
HI0933_like	PF03486.9	gi|124027680|ref|YP_001013000.1|	-	1.1e-10	40.5	0.5	0.0062	15.0	0.0	4.0	3	1	0	4	4	4	3	HI0933-like	protein
NAD_binding_9	PF13454.1	gi|124027680|ref|YP_001013000.1|	-	1e-06	28.6	2.0	0.25	11.0	0.0	4.0	4	0	0	4	4	4	2	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|124027680|ref|YP_001013000.1|	-	1e-06	27.9	2.9	0.00042	19.2	0.1	3.4	4	1	1	5	5	5	2	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|124027680|ref|YP_001013000.1|	-	2.1e-06	27.6	0.8	0.00064	19.7	0.0	2.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.9	gi|124027680|ref|YP_001013000.1|	-	4.2e-06	25.6	3.6	0.028	13.0	0.1	3.6	4	0	0	4	4	4	2	Tryptophan	halogenase
FAD_binding_2	PF00890.19	gi|124027680|ref|YP_001013000.1|	-	4.7e-06	25.7	4.6	0.026	13.3	0.1	3.3	4	0	0	4	4	4	2	FAD	binding	domain
K_oxygenase	PF13434.1	gi|124027680|ref|YP_001013000.1|	-	1.6e-05	23.9	0.0	5.3e-05	22.2	0.0	1.7	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.7	gi|124027680|ref|YP_001013000.1|	-	0.00016	20.7	2.5	0.54	9.1	0.0	4.1	3	1	0	4	4	4	1	Lycopene	cyclase	protein
NAD_binding_7	PF13241.1	gi|124027680|ref|YP_001013000.1|	-	0.0005	20.2	0.4	0.24	11.6	0.0	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.2	gi|124027680|ref|YP_001013000.1|	-	0.00061	18.9	7.9	0.65	9.0	0.4	4.0	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|124027680|ref|YP_001013000.1|	-	0.0018	17.8	1.4	0.17	11.4	0.1	2.4	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.13	gi|124027680|ref|YP_001013000.1|	-	0.002	17.8	0.9	0.018	14.7	0.1	2.2	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|124027680|ref|YP_001013000.1|	-	0.0073	16.2	0.3	1.5	8.7	0.1	2.9	2	0	0	2	2	2	1	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|124027680|ref|YP_001013000.1|	-	0.008	15.5	0.1	0.043	13.2	0.0	2.0	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|124027680|ref|YP_001013000.1|	-	0.018	15.0	1.9	0.28	11.1	0.0	2.8	3	0	0	3	3	3	0	NADH(P)-binding
Thi4	PF01946.12	gi|124027680|ref|YP_001013000.1|	-	0.02	14.0	2.4	0.98	8.4	0.1	2.9	3	0	0	3	3	3	0	Thi4	family
CPSase_L_chain	PF00289.17	gi|124027680|ref|YP_001013000.1|	-	0.097	12.7	0.6	0.34	11.0	0.0	2.2	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
FAD_binding_3	PF01494.14	gi|124027680|ref|YP_001013000.1|	-	0.26	10.2	7.4	1.6	7.6	0.1	2.9	2	1	0	3	3	3	0	FAD	binding	domain
PAP2	PF01569.16	gi|124027681|ref|YP_001013001.1|	-	2.2e-19	69.4	7.5	2.2e-19	69.4	5.2	2.5	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.1	gi|124027681|ref|YP_001013001.1|	-	2.7e-06	27.0	9.3	5.5e-06	26.0	5.8	1.9	1	1	1	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|124027681|ref|YP_001013001.1|	-	0.0002	21.5	4.6	0.0002	21.5	3.2	1.9	2	0	0	2	2	2	1	PAP2	superfamily	C-terminal
Per1	PF04080.8	gi|124027681|ref|YP_001013001.1|	-	0.084	12.2	1.2	0.12	11.7	0.8	1.2	1	0	0	1	1	1	0	Per1-like
DUF512	PF04459.7	gi|124027682|ref|YP_001013002.1|	-	0.00012	21.2	0.0	0.00019	20.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF512)
DUF4346	PF14251.1	gi|124027682|ref|YP_001013002.1|	-	0.0045	16.7	0.1	0.0099	15.6	0.1	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4346)
Asp_Glu_race	PF01177.17	gi|124027682|ref|YP_001013002.1|	-	0.037	13.9	0.0	0.33	10.8	0.0	2.3	1	1	1	2	2	2	0	Asp/Glu/Hydantoin	racemase
GDPD	PF03009.12	gi|124027683|ref|YP_001013003.1|	-	1.2e-31	110.1	0.0	4.3e-30	105.0	0.0	2.1	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.1	gi|124027683|ref|YP_001013003.1|	-	4.9e-06	26.5	0.4	2.2e-05	24.4	0.2	2.0	2	0	0	2	2	2	1	Glycerophosphoryl	diester	phosphodiesterase	family
DUF1796	PF08795.5	gi|124027683|ref|YP_001013003.1|	-	0.094	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Putative	papain-like	cysteine	peptidase	(DUF1796)
ArsA_ATPase	PF02374.10	gi|124027684|ref|YP_001013004.1|	-	7.9e-25	87.5	0.0	9e-25	87.3	0.0	1.1	1	0	0	1	1	1	1	Anion-transporting	ATPase
ParA	PF10609.4	gi|124027684|ref|YP_001013004.1|	-	0.0014	18.5	0.1	0.85	9.5	0.0	2.3	2	0	0	2	2	2	2	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|124027684|ref|YP_001013004.1|	-	0.0028	17.1	0.0	0.71	9.2	0.0	2.3	2	0	0	2	2	2	2	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.10	gi|124027685|ref|YP_001013005.1|	-	4.2e-13	49.0	0.0	4.3e-13	48.9	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|124027685|ref|YP_001013005.1|	-	1.8e-11	43.8	0.0	1.9e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|124027685|ref|YP_001013005.1|	-	1.2e-05	25.2	0.0	1.4e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|124027685|ref|YP_001013005.1|	-	3.1e-05	23.5	0.1	3.9e-05	23.1	0.1	1.1	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ArgK	PF03308.11	gi|124027685|ref|YP_001013005.1|	-	0.00012	20.9	0.1	0.00013	20.8	0.0	1.1	1	0	0	1	1	1	1	ArgK	protein
ATP_bind_1	PF03029.12	gi|124027685|ref|YP_001013005.1|	-	0.00015	21.3	0.0	0.00015	21.3	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.9	gi|124027685|ref|YP_001013005.1|	-	0.0003	20.5	0.2	0.00039	20.1	0.1	1.1	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|124027685|ref|YP_001013005.1|	-	0.0003	21.0	0.0	0.00036	20.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027685|ref|YP_001013005.1|	-	0.00032	21.5	0.1	0.00034	21.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027685|ref|YP_001013005.1|	-	0.00033	20.3	0.2	0.00049	19.7	0.1	1.3	1	0	0	1	1	1	1	Part	of	AAA	domain
MipZ	PF09140.6	gi|124027685|ref|YP_001013005.1|	-	0.00047	19.3	0.0	0.00047	19.3	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
AAA_16	PF13191.1	gi|124027685|ref|YP_001013005.1|	-	0.00061	19.8	0.0	0.00068	19.6	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|124027685|ref|YP_001013005.1|	-	0.0017	17.7	0.0	0.0017	17.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|124027685|ref|YP_001013005.1|	-	0.0026	17.9	0.1	0.0028	17.8	0.1	1.3	1	1	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|124027685|ref|YP_001013005.1|	-	0.0027	17.4	0.6	0.0038	16.9	0.4	1.2	1	0	0	1	1	1	1	NTPase
Fer4_NifH	PF00142.13	gi|124027685|ref|YP_001013005.1|	-	0.0032	16.7	0.1	0.004	16.3	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
DUF2075	PF09848.4	gi|124027685|ref|YP_001013005.1|	-	0.0041	16.1	0.0	0.0041	16.1	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
IstB_IS21	PF01695.12	gi|124027685|ref|YP_001013005.1|	-	0.01	15.2	0.0	0.011	15.1	0.0	1.1	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_30	PF13604.1	gi|124027685|ref|YP_001013005.1|	-	0.015	14.9	0.0	0.018	14.5	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|124027685|ref|YP_001013005.1|	-	0.018	13.9	0.0	0.021	13.6	0.0	1.1	1	0	0	1	1	1	0	NB-ARC	domain
AAA_10	PF12846.2	gi|124027685|ref|YP_001013005.1|	-	0.023	14.1	0.0	0.026	13.9	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
DUF258	PF03193.11	gi|124027685|ref|YP_001013005.1|	-	0.024	13.8	0.1	0.034	13.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
PhoH	PF02562.11	gi|124027685|ref|YP_001013005.1|	-	0.028	13.6	0.0	0.031	13.5	0.0	1.1	1	0	0	1	1	1	0	PhoH-like	protein
KaiC	PF06745.8	gi|124027685|ref|YP_001013005.1|	-	0.03	13.4	0.0	0.038	13.1	0.0	1.1	1	0	0	1	1	1	0	KaiC
APS_kinase	PF01583.15	gi|124027685|ref|YP_001013005.1|	-	0.036	13.7	0.0	0.042	13.5	0.0	1.2	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NACHT	PF05729.7	gi|124027685|ref|YP_001013005.1|	-	0.038	13.6	0.6	0.071	12.7	0.2	1.6	2	0	0	2	2	2	0	NACHT	domain
YhjQ	PF06564.7	gi|124027685|ref|YP_001013005.1|	-	0.039	13.3	0.0	0.047	13.0	0.0	1.2	1	0	0	1	1	1	0	YhjQ	protein
KTI12	PF08433.5	gi|124027685|ref|YP_001013005.1|	-	0.046	12.9	0.0	0.052	12.7	0.0	1.1	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
ABC_tran	PF00005.22	gi|124027685|ref|YP_001013005.1|	-	0.047	14.0	0.0	0.05	13.9	0.0	1.1	1	0	0	1	1	1	0	ABC	transporter
AAA_24	PF13479.1	gi|124027685|ref|YP_001013005.1|	-	0.051	13.1	0.1	0.06	12.9	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
PIF1	PF05970.9	gi|124027685|ref|YP_001013005.1|	-	0.09	11.7	0.0	0.11	11.4	0.0	1.1	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_14	PF13173.1	gi|124027685|ref|YP_001013005.1|	-	0.095	12.6	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|124027685|ref|YP_001013005.1|	-	0.11	12.7	0.1	0.12	12.5	0.1	1.2	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrwB_AAD_bind	PF10412.4	gi|124027685|ref|YP_001013005.1|	-	0.14	10.7	0.0	0.18	10.4	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T2SE	PF00437.15	gi|124027685|ref|YP_001013005.1|	-	0.14	10.9	0.1	0.2	10.5	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
KAP_NTPase	PF07693.9	gi|124027685|ref|YP_001013005.1|	-	0.15	11.0	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
LpxK	PF02606.9	gi|124027685|ref|YP_001013005.1|	-	0.15	10.9	0.2	0.21	10.5	0.1	1.1	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
Zeta_toxin	PF06414.7	gi|124027685|ref|YP_001013005.1|	-	0.16	11.0	0.0	0.21	10.6	0.0	1.1	1	0	0	1	1	1	0	Zeta	toxin
AAA_26	PF13500.1	gi|124027685|ref|YP_001013005.1|	-	0.18	11.3	0.3	0.26	10.8	0.2	1.2	1	0	0	1	1	1	0	AAA	domain
CstA	PF02554.9	gi|124027687|ref|YP_001013007.1|	-	1.6e-123	412.1	31.1	1.6e-123	412.1	21.6	2.0	2	1	0	2	2	2	1	Carbon	starvation	protein	CstA
DUF4161	PF13722.1	gi|124027687|ref|YP_001013007.1|	-	3.5e-28	98.4	11.3	3.5e-28	98.4	7.9	4.2	4	1	0	5	5	5	1	C-terminal	domain	on	CstA	(DUF4161)
DUF2157	PF09925.4	gi|124027688|ref|YP_001013008.1|	-	0.12	12.0	3.7	0.12	11.9	0.7	1.9	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
Neurensin	PF14927.1	gi|124027688|ref|YP_001013008.1|	-	0.13	11.6	0.5	0.18	11.1	0.1	1.3	1	1	0	1	1	1	0	Neurensin
Yip1	PF04893.12	gi|124027688|ref|YP_001013008.1|	-	0.16	11.4	3.1	0.17	11.3	2.2	1.1	1	0	0	1	1	1	0	Yip1	domain
TctB	PF07331.6	gi|124027688|ref|YP_001013008.1|	-	0.19	11.3	3.9	0.36	10.4	2.7	1.5	1	1	0	1	1	1	0	Tripartite	tricarboxylate	transporter	TctB	family
DUF3955	PF13127.1	gi|124027688|ref|YP_001013008.1|	-	2.7	7.6	11.6	2.5	7.7	0.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3955)
DUF308	PF03729.8	gi|124027688|ref|YP_001013008.1|	-	5.9	6.9	10.0	3.5e+02	1.2	7.0	2.1	1	1	0	1	1	1	0	Short	repeat	of	unknown	function	(DUF308)
DUF202	PF02656.10	gi|124027688|ref|YP_001013008.1|	-	8.5	6.6	6.5	35	4.6	4.5	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
ABC_tran	PF00005.22	gi|124027690|ref|YP_001013010.1|	-	3e-08	34.0	0.1	4.6e-08	33.4	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027690|ref|YP_001013010.1|	-	7.9e-06	26.0	0.0	1e-05	25.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|124027690|ref|YP_001013010.1|	-	0.0091	15.8	0.2	0.19	11.6	0.1	2.3	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_15	PF13175.1	gi|124027690|ref|YP_001013010.1|	-	0.014	14.4	0.0	0.019	14.0	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
SMC_N	PF02463.14	gi|124027690|ref|YP_001013010.1|	-	0.028	13.6	0.0	0.038	13.2	0.0	1.1	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
PAP2_3	PF14378.1	gi|124027692|ref|YP_001013012.1|	-	1.1e-14	54.3	14.3	2.6e-14	53.1	9.9	1.6	1	1	0	1	1	1	1	PAP2	superfamily
PAP2	PF01569.16	gi|124027692|ref|YP_001013012.1|	-	5.4e-09	35.8	13.7	1.6e-08	34.2	6.5	2.3	1	1	1	2	2	2	2	PAP2	superfamily
PAP2_C	PF14360.1	gi|124027692|ref|YP_001013012.1|	-	2.3	8.5	8.4	0.29	11.4	1.4	2.3	2	0	0	2	2	2	0	PAP2	superfamily	C-terminal
HHH_3	PF12836.2	gi|124027693|ref|YP_001013013.1|	-	1.1e-07	31.6	0.0	2.2e-07	30.6	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.18	gi|124027693|ref|YP_001013013.1|	-	3.7e-06	26.3	0.0	1e-05	24.9	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|124027693|ref|YP_001013013.1|	-	0.00072	19.6	0.0	0.0021	18.1	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|124027693|ref|YP_001013013.1|	-	0.0027	17.5	0.0	0.0051	16.6	0.0	1.4	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_8	PF14716.1	gi|124027693|ref|YP_001013013.1|	-	0.0093	16.1	0.0	0.019	15.1	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
GHMP_kinases_N	PF00288.21	gi|124027694|ref|YP_001013014.1|	-	3.9e-12	46.0	2.7	7.5e-12	45.1	1.9	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|124027694|ref|YP_001013014.1|	-	6.3e-11	42.3	0.2	4.7e-09	36.3	0.0	2.4	1	1	1	2	2	2	2	GHMP	kinases	C	terminal
Cys_Met_Meta_PP	PF01053.15	gi|124027696|ref|YP_001013016.1|	-	1.2e-121	405.6	0.0	1.4e-121	405.4	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|124027696|ref|YP_001013016.1|	-	2.1e-07	30.0	0.0	3.7e-07	29.2	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.16	gi|124027696|ref|YP_001013016.1|	-	3.7e-05	22.8	0.0	6.1e-05	22.1	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|124027696|ref|YP_001013016.1|	-	0.00043	19.5	0.0	0.0014	17.8	0.0	1.8	1	1	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|124027696|ref|YP_001013016.1|	-	0.0052	15.8	0.0	0.062	12.3	0.0	2.1	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cyclase	PF04199.8	gi|124027698|ref|YP_001013018.1|	-	6.6e-43	146.3	0.0	8e-43	146.0	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
DUF2306	PF10067.4	gi|124027699|ref|YP_001013019.1|	-	0.64	10.1	5.3	3.4	7.8	1.7	2.3	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2306)
ABC_tran	PF00005.22	gi|124027700|ref|YP_001013020.1|	-	2e-26	92.9	0.0	6.3e-26	91.3	0.0	1.8	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|124027700|ref|YP_001013020.1|	-	3.1e-18	65.8	0.2	5.9e-18	64.9	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|124027700|ref|YP_001013020.1|	-	8.2e-11	42.3	0.2	9.5e-08	32.3	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|124027700|ref|YP_001013020.1|	-	0.0011	19.0	0.0	0.0022	18.0	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_13	PF13166.1	gi|124027700|ref|YP_001013020.1|	-	0.0022	16.5	0.0	0.0069	14.9	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|124027700|ref|YP_001013020.1|	-	0.0025	17.9	0.2	0.14	12.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|124027700|ref|YP_001013020.1|	-	0.0059	16.1	0.0	0.01	15.3	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.17	gi|124027700|ref|YP_001013020.1|	-	0.05	13.7	0.0	0.096	12.8	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_5	PF07728.9	gi|124027700|ref|YP_001013020.1|	-	0.053	13.2	0.1	0.23	11.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
DUF258	PF03193.11	gi|124027700|ref|YP_001013020.1|	-	0.077	12.1	0.0	0.16	11.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ATP-synt_ab	PF00006.20	gi|124027700|ref|YP_001013020.1|	-	0.11	11.9	0.0	0.15	11.5	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_18	PF13238.1	gi|124027700|ref|YP_001013020.1|	-	0.14	12.4	0.0	0.27	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|124027700|ref|YP_001013020.1|	-	0.15	12.2	0.0	0.38	10.9	0.0	1.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|124027700|ref|YP_001013020.1|	-	0.16	11.3	0.0	0.53	9.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
SBP_bac_5	PF00496.17	gi|124027701|ref|YP_001013021.1|	-	1.1e-22	80.4	4.8	3.2e-14	52.5	0.0	3.5	3	1	0	3	3	3	3	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
DUF3806	PF12713.2	gi|124027701|ref|YP_001013021.1|	-	0.018	14.5	0.1	5.8	6.4	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3806)
Baculo_PEP_C	PF04513.7	gi|124027701|ref|YP_001013021.1|	-	0.022	14.5	10.4	0.018	14.8	6.0	1.7	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
CAMP_factor	PF07373.6	gi|124027701|ref|YP_001013021.1|	-	0.029	13.8	4.0	0.052	13.0	2.8	1.3	1	0	0	1	1	1	0	CAMP	factor	(Cfa)
DUF3376	PF11856.3	gi|124027701|ref|YP_001013021.1|	-	0.05	12.9	0.4	0.12	11.7	0.1	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3376)
Phasin	PF05597.6	gi|124027701|ref|YP_001013021.1|	-	0.055	13.2	0.7	0.12	12.1	0.5	1.5	1	0	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
EssA	PF10661.4	gi|124027701|ref|YP_001013021.1|	-	0.14	11.7	2.9	1.4	8.5	2.0	2.2	1	1	0	1	1	1	0	WXG100	protein	secretion	system	(Wss),	protein	EssA
Prominin	PF05478.6	gi|124027701|ref|YP_001013021.1|	-	0.17	9.3	2.0	0.24	8.9	1.4	1.1	1	0	0	1	1	1	0	Prominin
FlaC_arch	PF05377.6	gi|124027701|ref|YP_001013021.1|	-	0.33	10.8	2.0	3.1	7.7	0.0	2.6	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
tRNA_anti-codon	PF01336.20	gi|124027704|ref|YP_001013024.1|	-	4.5e-07	29.6	0.3	6.8e-07	29.0	0.2	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
PS-DH	PF14765.1	gi|124027704|ref|YP_001013024.1|	-	0.019	14.0	0.2	0.022	13.8	0.2	1.1	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
GTP_EFTU_D2	PF03144.20	gi|124027704|ref|YP_001013024.1|	-	0.031	14.3	0.3	0.28	11.3	0.0	2.3	2	0	0	2	2	2	0	Elongation	factor	Tu	domain	2
dCMP_cyt_deam_1	PF00383.17	gi|124027705|ref|YP_001013025.1|	-	3.8e-17	61.7	0.1	4.9e-17	61.4	0.1	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.6	gi|124027705|ref|YP_001013025.1|	-	7.1e-11	42.1	0.1	6.3e-10	39.1	0.1	1.9	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.1	gi|124027705|ref|YP_001013025.1|	-	0.00031	20.1	2.1	0.19	11.0	0.1	2.1	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
GCV_T	PF01571.16	gi|124027706|ref|YP_001013026.1|	-	3.4e-60	203.0	0.0	4.2e-60	202.7	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|124027706|ref|YP_001013026.1|	-	8e-22	77.0	0.5	2.2e-21	75.6	0.4	1.8	2	0	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
MCE	PF02470.15	gi|124027706|ref|YP_001013026.1|	-	0.059	13.3	0.2	0.12	12.4	0.1	1.5	1	0	0	1	1	1	0	mce	related	protein
DUF1611	PF07755.6	gi|124027707|ref|YP_001013027.1|	-	4.8e-98	327.5	0.0	5.5e-98	327.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1611)
GatB_N	PF02934.10	gi|124027709|ref|YP_001013029.1|	-	5.7e-113	376.5	0.0	7.7e-113	376.1	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|124027709|ref|YP_001013029.1|	-	1.6e-37	128.4	0.0	2.9e-37	127.6	0.0	1.4	1	0	0	1	1	1	1	GatB	domain
EH_Signature	PF15611.1	gi|124027709|ref|YP_001013029.1|	-	0.012	14.7	0.1	0.015	14.3	0.1	1.2	1	0	0	1	1	1	0	EH_Signature	domain
Ferritin	PF00210.19	gi|124027709|ref|YP_001013029.1|	-	0.074	12.7	0.2	1.8	8.3	0.1	2.7	3	0	0	3	3	3	0	Ferritin-like	domain
HEM4	PF02602.10	gi|124027710|ref|YP_001013030.1|	-	5.7e-38	130.4	1.0	6.8e-38	130.1	0.7	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
B12-binding	PF02310.14	gi|124027710|ref|YP_001013030.1|	-	0.028	14.3	0.1	1.2	8.9	0.0	2.4	1	1	1	2	2	2	0	B12	binding	domain
TP_methylase	PF00590.15	gi|124027711|ref|YP_001013031.1|	-	3.3e-51	173.9	1.3	3.8e-51	173.7	0.9	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF1529	PF07485.6	gi|124027711|ref|YP_001013031.1|	-	0.085	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1259)
Porphobil_deam	PF01379.15	gi|124027712|ref|YP_001013032.1|	-	6.7e-69	231.0	0.0	8.2e-69	230.8	0.0	1.1	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|124027712|ref|YP_001013032.1|	-	1.3e-15	57.2	0.0	2.3e-15	56.4	0.0	1.4	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
SBP_bac_11	PF13531.1	gi|124027712|ref|YP_001013032.1|	-	0.013	15.1	0.0	0.032	13.8	0.0	1.7	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
Aminotran_3	PF00202.16	gi|124027713|ref|YP_001013033.1|	-	7.3e-71	238.7	0.0	9.4e-71	238.4	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|124027713|ref|YP_001013033.1|	-	0.00017	20.6	0.0	0.00025	20.0	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|124027713|ref|YP_001013033.1|	-	0.0031	16.6	0.2	0.0061	15.7	0.1	1.5	1	1	0	1	1	1	1	Beta-eliminating	lyase
APH	PF01636.18	gi|124027714|ref|YP_001013034.1|	-	2.4e-07	30.7	5.2	2.6e-05	24.0	0.1	2.9	2	1	1	3	3	3	2	Phosphotransferase	enzyme	family
Hist_deacetyl	PF00850.14	gi|124027715|ref|YP_001013035.1|	-	2.7e-67	227.2	0.0	3.4e-67	226.9	0.0	1.0	1	0	0	1	1	1	1	Histone	deacetylase	domain
GTP_EFTU	PF00009.22	gi|124027716|ref|YP_001013036.1|	-	4.9e-62	208.7	0.0	7.1e-62	208.1	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|124027716|ref|YP_001013036.1|	-	5.7e-36	122.7	0.6	4.4e-35	119.8	0.0	2.7	3	0	0	3	3	3	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.1	gi|124027716|ref|YP_001013036.1|	-	3.4e-25	87.6	0.0	8.7e-25	86.3	0.0	1.8	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
EFG_C	PF00679.19	gi|124027716|ref|YP_001013036.1|	-	5.3e-25	87.1	0.0	1.3e-24	85.8	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
GTP_EFTU_D2	PF03144.20	gi|124027716|ref|YP_001013036.1|	-	6.7e-14	51.7	0.1	2.2e-13	50.0	0.1	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|124027716|ref|YP_001013036.1|	-	0.00021	21.1	0.0	0.00046	20.1	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
G-alpha	PF00503.15	gi|124027716|ref|YP_001013036.1|	-	0.063	11.9	0.1	0.11	11.1	0.1	1.3	1	0	0	1	1	1	0	G-protein	alpha	subunit
ERCC4	PF02732.10	gi|124027717|ref|YP_001013037.1|	-	1.8e-24	86.0	0.0	2.7e-24	85.5	0.0	1.2	1	0	0	1	1	1	1	ERCC4	domain
HHH_5	PF14520.1	gi|124027717|ref|YP_001013037.1|	-	2.2e-06	27.7	0.0	6.8e-06	26.1	0.0	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.2	gi|124027717|ref|YP_001013037.1|	-	3.8e-05	23.4	0.0	0.0002	21.1	0.0	2.1	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|124027717|ref|YP_001013037.1|	-	0.004	17.3	0.0	0.0076	16.4	0.0	1.4	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
IMS_HHH	PF11798.3	gi|124027717|ref|YP_001013037.1|	-	0.0059	16.5	0.0	0.018	15.0	0.0	1.8	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH	PF00633.18	gi|124027717|ref|YP_001013037.1|	-	0.018	14.6	0.6	0.064	12.9	0.0	2.3	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Nol1_Nop2_Fmu	PF01189.12	gi|124027719|ref|YP_001013039.1|	-	1e-33	116.9	0.0	1.3e-33	116.5	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_25	PF13649.1	gi|124027719|ref|YP_001013039.1|	-	0.0012	19.1	0.0	0.0077	16.5	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124027719|ref|YP_001013039.1|	-	0.01	15.4	0.0	0.019	14.5	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|124027719|ref|YP_001013039.1|	-	0.011	15.1	0.0	0.018	14.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|124027719|ref|YP_001013039.1|	-	0.013	15.4	0.1	0.039	13.9	0.0	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
FtsJ	PF01728.14	gi|124027719|ref|YP_001013039.1|	-	0.022	14.7	0.0	0.048	13.6	0.0	1.6	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_15	PF09445.5	gi|124027719|ref|YP_001013039.1|	-	0.036	13.6	0.0	0.066	12.7	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
GPP34	PF05719.6	gi|124027719|ref|YP_001013039.1|	-	0.043	13.8	0.7	0.11	12.4	0.5	1.7	1	0	0	1	1	1	0	Golgi	phosphoprotein	3	(GPP34)
PCMT	PF01135.14	gi|124027719|ref|YP_001013039.1|	-	0.12	11.9	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RNase_HII	PF01351.13	gi|124027720|ref|YP_001013040.1|	-	6.8e-47	159.6	0.0	7.9e-47	159.4	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
Voltage_CLC	PF00654.15	gi|124027722|ref|YP_001013042.1|	-	7.5e-73	245.5	33.9	7.5e-73	245.5	23.5	1.6	2	0	0	2	2	2	1	Voltage	gated	chloride	channel
CBS	PF00571.23	gi|124027722|ref|YP_001013042.1|	-	9e-08	31.7	0.7	1.3e-06	28.0	0.1	2.6	2	0	0	2	2	2	1	CBS	domain
CybS	PF05328.7	gi|124027722|ref|YP_001013042.1|	-	0.79	9.3	6.4	2.1	7.9	0.7	3.1	3	0	0	3	3	3	0	CybS
TauD	PF02668.11	gi|124027723|ref|YP_001013043.1|	-	0.021	14.4	0.0	0.033	13.8	0.0	1.2	1	0	0	1	1	1	0	Taurine	catabolism	dioxygenase	TauD,	TfdA	family
Lactamase_B_3	PF13483.1	gi|124027724|ref|YP_001013044.1|	-	2e-35	121.8	0.0	2.4e-35	121.6	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|124027724|ref|YP_001013044.1|	-	1.1e-11	44.6	0.5	1.2e-09	38.0	0.3	2.1	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|124027724|ref|YP_001013044.1|	-	0.17	11.5	4.6	0.43	10.1	2.0	2.1	1	1	0	2	2	2	0	Metallo-beta-lactamase	superfamily
ABC_tran	PF00005.22	gi|124027725|ref|YP_001013045.1|	-	6.1e-23	81.6	0.0	8.1e-23	81.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027725|ref|YP_001013045.1|	-	2.4e-13	50.6	0.0	1.6e-07	31.6	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027725|ref|YP_001013045.1|	-	0.00013	21.3	0.0	0.14	11.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|124027725|ref|YP_001013045.1|	-	0.0021	18.2	0.1	0.022	14.8	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027725|ref|YP_001013045.1|	-	0.0023	17.4	0.0	0.0046	16.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|124027725|ref|YP_001013045.1|	-	0.0041	16.8	3.5	0.0087	15.7	0.0	2.9	3	1	0	3	3	3	1	Part	of	AAA	domain
AAA_23	PF13476.1	gi|124027725|ref|YP_001013045.1|	-	0.0042	17.4	0.1	0.0063	16.8	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|124027725|ref|YP_001013045.1|	-	0.0043	16.6	0.0	0.099	12.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124027725|ref|YP_001013045.1|	-	0.0053	16.7	0.0	0.01	15.8	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|124027725|ref|YP_001013045.1|	-	0.0062	16.4	0.0	0.11	12.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|124027725|ref|YP_001013045.1|	-	0.014	14.8	0.0	0.023	14.1	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|124027725|ref|YP_001013045.1|	-	0.026	14.2	0.0	0.089	12.4	0.0	1.9	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
UPF0079	PF02367.12	gi|124027725|ref|YP_001013045.1|	-	0.095	12.3	0.0	0.18	11.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA	PF00004.24	gi|124027725|ref|YP_001013045.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC2_membrane_2	PF12679.2	gi|124027726|ref|YP_001013046.1|	-	1.6e-23	82.9	1.8	2.6e-23	82.2	1.2	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|124027726|ref|YP_001013046.1|	-	3.3e-22	78.9	9.7	5.4e-22	78.2	6.7	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|124027726|ref|YP_001013046.1|	-	7.3e-12	44.9	8.3	1e-11	44.4	5.8	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|124027726|ref|YP_001013046.1|	-	1.1e-08	34.5	11.2	1.1e-08	34.5	7.8	2.7	2	1	1	3	3	3	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.1	gi|124027726|ref|YP_001013046.1|	-	0.00085	18.6	4.6	0.00085	18.6	3.2	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
YibE_F	PF07907.6	gi|124027726|ref|YP_001013046.1|	-	0.0027	16.9	11.7	0.0027	16.9	8.1	1.7	2	0	0	2	2	2	1	YibE/F-like	protein
Methyltransf_21	PF05050.7	gi|124027727|ref|YP_001013047.1|	-	1.1e-15	58.0	0.0	1.5e-15	57.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_22	PF13383.1	gi|124027727|ref|YP_001013047.1|	-	0.00084	18.9	0.0	0.0012	18.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|124027727|ref|YP_001013047.1|	-	0.0032	17.0	0.1	0.03	13.9	0.0	2.0	2	0	0	2	2	2	1	Met-10+	like-protein
PCMT	PF01135.14	gi|124027727|ref|YP_001013047.1|	-	0.015	14.8	0.0	0.031	13.7	0.0	1.5	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_24	PF13578.1	gi|124027727|ref|YP_001013047.1|	-	0.018	15.8	0.0	0.085	13.6	0.0	2.1	1	1	1	2	2	2	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124027727|ref|YP_001013047.1|	-	0.068	13.7	0.0	0.17	12.4	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Thy1	PF02511.10	gi|124027729|ref|YP_001013049.1|	-	2.7e-63	212.7	0.3	3.6e-63	212.3	0.2	1.1	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
Ribonuc_red_lgC	PF02867.10	gi|124027730|ref|YP_001013050.1|	-	1.4e-124	416.6	0.0	4.5e-92	309.3	0.0	2.2	2	0	0	2	2	2	2	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.16	gi|124027730|ref|YP_001013050.1|	-	1.2e-12	47.4	0.3	3.1e-12	46.1	0.2	1.8	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
KaiC	PF06745.8	gi|124027732|ref|YP_001013052.1|	-	1.7e-59	200.7	0.1	1.9e-59	200.5	0.1	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|124027732|ref|YP_001013052.1|	-	1.9e-11	43.7	0.0	3.6e-11	42.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|124027732|ref|YP_001013052.1|	-	9.8e-08	30.7	0.5	3.1e-07	29.1	0.4	1.8	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
RecA	PF00154.16	gi|124027732|ref|YP_001013052.1|	-	4.2e-06	26.0	0.0	6.7e-06	25.3	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
IstB_IS21	PF01695.12	gi|124027732|ref|YP_001013052.1|	-	0.0006	19.2	0.0	0.0012	18.3	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Rad51	PF08423.6	gi|124027732|ref|YP_001013052.1|	-	0.00082	18.3	0.0	0.0012	17.7	0.0	1.4	1	0	0	1	1	1	1	Rad51
AAA_19	PF13245.1	gi|124027732|ref|YP_001013052.1|	-	0.0018	18.0	0.0	0.0053	16.4	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
MEDS	PF14417.1	gi|124027732|ref|YP_001013052.1|	-	0.0051	15.8	0.0	0.008	15.2	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
PAXNEB	PF05625.6	gi|124027732|ref|YP_001013052.1|	-	0.009	14.8	0.0	0.014	14.2	0.0	1.2	1	0	0	1	1	1	1	PAXNEB	protein
DUF2075	PF09848.4	gi|124027732|ref|YP_001013052.1|	-	0.017	14.0	0.0	0.027	13.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_22	PF13401.1	gi|124027732|ref|YP_001013052.1|	-	0.06	13.4	0.1	0.11	12.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
DnaB_C	PF03796.10	gi|124027732|ref|YP_001013052.1|	-	0.063	12.1	0.0	0.11	11.3	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
T2SE	PF00437.15	gi|124027732|ref|YP_001013052.1|	-	0.074	11.9	0.0	0.13	11.0	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
dUTPase	PF00692.14	gi|124027733|ref|YP_001013053.1|	-	2.4e-09	36.7	0.0	3.5e-09	36.1	0.0	1.2	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.6	gi|124027733|ref|YP_001013053.1|	-	0.032	12.6	0.1	0.95	7.7	0.0	2.1	1	1	1	2	2	2	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
NTP_transf_2	PF01909.18	gi|124027735|ref|YP_001013055.1|	-	0.07	13.4	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
2-Hacid_dh_C	PF02826.14	gi|124027736|ref|YP_001013056.1|	-	1.8e-71	238.9	0.0	2.2e-71	238.6	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|124027736|ref|YP_001013056.1|	-	4.1e-21	74.8	0.0	4.7e-21	74.6	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|124027736|ref|YP_001013056.1|	-	2.8e-05	24.0	0.0	4e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.12	gi|124027736|ref|YP_001013056.1|	-	0.0024	18.2	0.0	0.0052	17.1	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.7	gi|124027736|ref|YP_001013056.1|	-	0.0032	16.8	0.0	0.0048	16.2	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Gp_dh_N	PF00044.19	gi|124027736|ref|YP_001013056.1|	-	0.0069	16.3	0.0	0.01	15.7	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|124027736|ref|YP_001013056.1|	-	0.061	13.8	0.0	0.14	12.7	0.0	1.6	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Saccharop_dh	PF03435.13	gi|124027736|ref|YP_001013056.1|	-	0.094	11.6	0.0	0.16	10.9	0.0	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|124027736|ref|YP_001013056.1|	-	0.1	12.3	0.1	1.6	8.4	0.0	2.2	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ELFV_dehydrog	PF00208.16	gi|124027737|ref|YP_001013057.1|	-	1.2e-70	237.8	4.7	1.5e-70	237.5	3.2	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|124027737|ref|YP_001013057.1|	-	1e-55	186.8	0.0	2.1e-55	185.8	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
Oxidored_nitro	PF00148.14	gi|124027737|ref|YP_001013057.1|	-	0.0016	17.1	0.1	0.0024	16.6	0.1	1.3	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
2-Hacid_dh_C	PF02826.14	gi|124027737|ref|YP_001013057.1|	-	0.0018	17.4	0.2	0.0067	15.6	0.1	1.9	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|124027737|ref|YP_001013057.1|	-	0.0067	16.0	1.9	0.022	14.3	1.3	1.9	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.7	gi|124027737|ref|YP_001013057.1|	-	0.016	14.6	0.2	0.046	13.1	0.1	1.9	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Pyr_redox_2	PF07992.9	gi|124027737|ref|YP_001013057.1|	-	0.082	12.7	0.5	0.17	11.7	0.3	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.16	gi|124027737|ref|YP_001013057.1|	-	0.11	12.3	0.7	0.24	11.2	0.5	1.6	1	1	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
DUF4192	PF13830.1	gi|124027738|ref|YP_001013058.1|	-	0.0024	17.6	0.1	0.0027	17.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4192)
Radical_SAM	PF04055.16	gi|124027741|ref|YP_001013061.1|	-	3.9e-14	53.1	0.0	6.5e-14	52.4	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124027741|ref|YP_001013061.1|	-	1.8e-08	34.6	0.0	2.6e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|124027741|ref|YP_001013061.1|	-	3e-07	30.4	0.0	4.7e-07	29.8	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
DUF89	PF01937.14	gi|124027742|ref|YP_001013062.1|	-	1.1e-29	103.3	0.0	1.3e-29	103.1	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF89
Pyrophosphatase	PF00719.14	gi|124027743|ref|YP_001013063.1|	-	4.7e-63	211.2	0.1	5.4e-63	211.1	0.1	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
GTP_cyclohydroI	PF01227.17	gi|124027744|ref|YP_001013064.1|	-	7.7e-69	230.5	0.0	8.7e-69	230.3	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
QueF	PF14489.1	gi|124027744|ref|YP_001013064.1|	-	0.00079	19.3	0.0	0.0018	18.2	0.0	1.6	1	0	0	1	1	1	1	QueF-like	protein
PSK_trans_fac	PF07704.6	gi|124027744|ref|YP_001013064.1|	-	0.42	11.3	2.1	2.7	8.7	0.2	2.7	2	1	0	2	2	2	0	Rv0623-like	transcription	factor
SpoU_methylase	PF00588.14	gi|124027746|ref|YP_001013065.1|	-	1.7e-09	37.6	0.0	2.9e-09	36.9	0.0	1.3	1	1	0	1	1	1	1	SpoU	rRNA	Methylase	family
MerT	PF02411.10	gi|124027747|ref|YP_001013067.1|	-	0.012	15.3	0.2	0.016	15.0	0.2	1.2	1	0	0	1	1	1	0	MerT	mercuric	transport	protein
DUF2192	PF09958.4	gi|124027748|ref|YP_001013068.1|	-	5.6e-89	297.3	6.3	6.4e-89	297.1	4.4	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
UBN2_2	PF14227.1	gi|124027748|ref|YP_001013068.1|	-	0.087	12.3	0.1	0.35	10.4	0.0	1.9	2	0	0	2	2	2	0	gag-polypeptide	of	LTR	copia-type
His_kinase	PF06580.8	gi|124027748|ref|YP_001013068.1|	-	0.087	12.7	0.5	0.21	11.5	0.1	1.8	2	0	0	2	2	2	0	Histidine	kinase
Aminotran_3	PF00202.16	gi|124027749|ref|YP_001013069.1|	-	4e-108	361.2	0.0	4.9e-108	360.9	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|124027749|ref|YP_001013069.1|	-	0.034	13.0	0.0	0.58	9.0	0.0	2.1	2	0	0	2	2	2	0	Aminotransferase	class	I	and	II
Ribosomal_L35Ae	PF01247.13	gi|124027750|ref|YP_001013070.1|	-	3.9e-18	65.0	0.7	6.9e-18	64.2	0.5	1.4	1	1	0	1	1	1	1	Ribosomal	protein	L35Ae
RimM	PF01782.13	gi|124027750|ref|YP_001013070.1|	-	7.8e-05	22.5	0.4	0.013	15.4	0.0	2.3	2	0	0	2	2	2	2	RimM	N-terminal	domain
NUDIX	PF00293.23	gi|124027751|ref|YP_001013071.1|	-	4.9e-17	61.8	0.0	6e-17	61.5	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_2	PF13869.1	gi|124027751|ref|YP_001013071.1|	-	0.0029	16.9	0.0	0.004	16.4	0.0	1.2	1	0	0	1	1	1	1	Nucleotide	hydrolase
GHMP_kinases_N	PF00288.21	gi|124027753|ref|YP_001013073.1|	-	2e-19	69.4	0.8	2e-19	69.4	0.6	2.2	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|124027753|ref|YP_001013073.1|	-	1.9e-15	56.8	0.6	5.7e-15	55.2	0.4	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.4	gi|124027753|ref|YP_001013073.1|	-	0.019	14.2	0.1	0.038	13.2	0.1	1.5	1	0	0	1	1	1	0	Galactokinase	galactose-binding	signature
Cren7	PF11520.3	gi|124027754|ref|YP_001013074.1|	-	3.3e-33	113.1	2.6	3.6e-33	112.9	1.8	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
YL1_C	PF08265.6	gi|124027754|ref|YP_001013074.1|	-	0.063	12.8	0.0	5.4	6.6	0.0	2.2	2	0	0	2	2	2	0	YL1	nuclear	protein	C-terminal	domain
tRNA-synt_1	PF00133.17	gi|124027755|ref|YP_001013075.1|	-	3e-108	362.4	0.0	3.8e-107	358.7	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|124027755|ref|YP_001013075.1|	-	4.4e-31	107.7	0.1	8.1e-31	106.8	0.1	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|124027755|ref|YP_001013075.1|	-	8.4e-29	100.4	0.0	8.6e-13	47.6	0.0	4.1	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
DZR	PF12773.2	gi|124027755|ref|YP_001013075.1|	-	0.028	14.2	0.9	2.2	8.1	0.1	3.0	3	0	0	3	3	3	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|124027755|ref|YP_001013075.1|	-	0.033	13.6	3.4	0.15	11.5	0.4	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|124027755|ref|YP_001013075.1|	-	0.037	13.2	1.2	0.21	10.8	0.0	2.6	3	1	0	3	3	3	0	zinc-ribbon	domain
tRNA-synt_1_2	PF13603.1	gi|124027755|ref|YP_001013075.1|	-	0.15	11.3	0.0	1.8	7.8	0.0	2.3	1	1	1	2	2	2	0	Leucyl-tRNA	synthetase,	Domain	2
DNA_ligase_ZBD	PF03119.11	gi|124027755|ref|YP_001013075.1|	-	5.3	6.8	9.2	0.23	11.2	0.3	3.0	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HD_3	PF13023.1	gi|124027756|ref|YP_001013076.1|	-	2e-19	69.9	0.0	2.7e-19	69.4	0.0	1.2	1	0	0	1	1	1	1	HD	domain
HD_2	PF12917.2	gi|124027756|ref|YP_001013076.1|	-	1.1e-05	25.3	0.1	1.4e-05	25.0	0.1	1.1	1	0	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
HD	PF01966.17	gi|124027756|ref|YP_001013076.1|	-	0.00027	20.9	1.1	0.00045	20.2	0.7	1.4	1	0	0	1	1	1	1	HD	domain
Phosphodiest	PF01663.17	gi|124027757|ref|YP_001013077.1|	-	0.13	11.5	0.0	0.23	10.7	0.0	1.5	2	0	0	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
zf-ribbon_3	PF13248.1	gi|124027758|ref|YP_001013078.1|	-	0.0012	17.9	0.2	0.32	10.2	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027758|ref|YP_001013078.1|	-	0.002	17.5	0.2	0.48	9.9	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|124027758|ref|YP_001013078.1|	-	0.0041	17.3	1.2	1.1	9.5	0.1	2.3	2	0	0	2	2	2	2	Recombinase	zinc	beta	ribbon	domain
Nudix_N_2	PF14803.1	gi|124027758|ref|YP_001013078.1|	-	0.0041	16.7	0.2	3.1	7.5	0.0	2.3	2	0	0	2	2	2	2	Nudix	N-terminal
UPF0547	PF10571.4	gi|124027758|ref|YP_001013078.1|	-	0.0085	15.7	1.0	1.3	8.7	0.0	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
Ribosomal_L37e	PF01907.14	gi|124027758|ref|YP_001013078.1|	-	0.01	15.6	1.0	0.56	10.0	0.1	2.2	2	0	0	2	2	2	0	Ribosomal	protein	L37e
zf-NADH-PPase	PF09297.6	gi|124027758|ref|YP_001013078.1|	-	0.011	15.1	3.6	0.21	11.1	0.3	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ISL3	PF14690.1	gi|124027758|ref|YP_001013078.1|	-	0.013	15.5	0.7	0.37	10.8	0.1	2.5	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-TFIIB	PF13453.1	gi|124027758|ref|YP_001013078.1|	-	0.02	14.0	0.4	1.6	7.9	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.5	gi|124027758|ref|YP_001013078.1|	-	0.063	13.2	4.2	0.44	10.5	2.9	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
HypA	PF01155.14	gi|124027758|ref|YP_001013078.1|	-	0.063	12.9	0.1	0.078	12.6	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|124027758|ref|YP_001013078.1|	-	0.067	12.5	1.3	3.8	6.8	0.1	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
DZR	PF12773.2	gi|124027758|ref|YP_001013078.1|	-	0.079	12.7	1.3	0.55	10.1	0.9	1.9	1	1	1	2	2	2	0	Double	zinc	ribbon
DUF2387	PF09526.5	gi|124027758|ref|YP_001013078.1|	-	0.089	12.7	0.4	10	6.1	0.0	2.2	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Auto_anti-p27	PF06677.7	gi|124027758|ref|YP_001013078.1|	-	0.23	11.2	3.3	1.1	9.1	0.2	2.7	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C4_Topoisom	PF01396.14	gi|124027758|ref|YP_001013078.1|	-	0.77	9.3	3.2	0.62	9.6	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|124027758|ref|YP_001013078.1|	-	0.91	9.3	4.9	8.9	6.2	0.5	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Peptidase_M24	PF00557.19	gi|124027759|ref|YP_001013079.1|	-	1.6e-47	161.8	0.0	1.8e-47	161.5	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Lactamase_B_3	PF13483.1	gi|124027760|ref|YP_001013080.1|	-	1.5e-25	89.8	0.1	2e-25	89.3	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|124027760|ref|YP_001013080.1|	-	1.4e-19	70.3	0.0	1.7e-19	70.1	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|124027760|ref|YP_001013080.1|	-	6.1e-12	45.6	1.6	9.5e-12	44.9	1.1	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
tRNA-synt_2d	PF01409.15	gi|124027761|ref|YP_001013081.1|	-	4e-83	278.4	0.0	6e-83	277.8	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.15	gi|124027761|ref|YP_001013081.1|	-	5.8e-08	31.8	0.7	0.0017	17.2	0.0	3.1	3	0	0	3	3	3	2	tRNA	synthetases	class	II	(D,	K	and	N)
TrmB	PF01978.14	gi|124027761|ref|YP_001013081.1|	-	1.1e-05	25.0	1.1	6.6e-05	22.5	0.4	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
tRNA-synt_2b	PF00587.20	gi|124027761|ref|YP_001013081.1|	-	0.0011	18.5	0.3	0.012	15.2	0.0	2.5	3	0	0	3	3	3	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HTH_Crp_2	PF13545.1	gi|124027761|ref|YP_001013081.1|	-	0.0038	16.9	0.1	0.045	13.5	0.0	2.6	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|124027761|ref|YP_001013081.1|	-	0.0069	15.9	1.5	0.016	14.8	0.2	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HemN_C	PF06969.11	gi|124027761|ref|YP_001013081.1|	-	0.024	14.7	0.4	14	5.8	0.0	3.1	2	0	0	2	2	2	0	HemN	C-terminal	domain
HTH_45	PF14947.1	gi|124027761|ref|YP_001013081.1|	-	0.06	13.1	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.2	gi|124027761|ref|YP_001013081.1|	-	0.066	12.8	0.3	0.066	12.8	0.2	3.4	4	0	0	4	4	4	0	MarR	family
HTH_36	PF13730.1	gi|124027761|ref|YP_001013081.1|	-	0.12	12.5	0.1	0.25	11.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
RNA_pol_Rpc34	PF05158.7	gi|124027761|ref|YP_001013081.1|	-	0.19	10.8	0.0	0.27	10.3	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
B5	PF03484.10	gi|124027762|ref|YP_001013082.1|	-	1.5e-17	63.2	4.7	3.8e-16	58.6	0.0	3.0	4	0	0	4	4	4	2	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|124027762|ref|YP_001013082.1|	-	4e-09	36.1	0.0	8.5e-09	35.1	0.0	1.5	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_His	PF13393.1	gi|124027762|ref|YP_001013082.1|	-	0.0031	16.6	0.0	0.0056	15.7	0.0	1.3	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_1b	PF00579.20	gi|124027763|ref|YP_001013083.1|	-	1.8e-46	158.6	0.0	1.4e-45	155.6	0.0	1.9	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Glyco_trans_1_2	PF13524.1	gi|124027763|ref|YP_001013083.1|	-	0.1	12.8	0.3	4.2	7.7	0.1	2.8	3	0	0	3	3	3	0	Glycosyl	transferases	group	1
Toprim_4	PF13662.1	gi|124027764|ref|YP_001013084.1|	-	1.6e-08	34.4	0.2	4e-08	33.1	0.1	1.7	1	0	0	1	1	1	1	Toprim	domain
Toprim	PF01751.17	gi|124027764|ref|YP_001013084.1|	-	1.2e-05	25.1	0.1	4.7e-05	23.3	0.1	2.0	1	0	0	1	1	1	1	Toprim	domain
Peptidase_M50	PF02163.17	gi|124027765|ref|YP_001013085.1|	-	5.5e-19	67.8	6.2	1.3e-18	66.7	2.3	2.6	2	1	0	2	2	2	1	Peptidase	family	M50
DUF4212	PF13937.1	gi|124027765|ref|YP_001013085.1|	-	0.025	14.5	1.2	0.96	9.4	0.1	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4212)
PDZ_2	PF13180.1	gi|124027765|ref|YP_001013085.1|	-	0.044	13.6	0.0	0.26	11.2	0.0	2.2	3	0	0	3	3	3	0	PDZ	domain
NTP_transf_2	PF01909.18	gi|124027766|ref|YP_001013086.1|	-	7.1e-08	32.6	0.0	1.5e-07	31.6	0.0	1.7	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
HTH_AsnC-type	PF13404.1	gi|124027766|ref|YP_001013086.1|	-	0.011	15.2	0.6	0.029	13.9	0.4	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Crp	PF00325.15	gi|124027766|ref|YP_001013086.1|	-	0.045	13.2	2.5	1.5	8.3	0.2	3.0	2	1	0	2	2	2	0	Bacterial	regulatory	proteins,	crp	family
HTH_24	PF13412.1	gi|124027766|ref|YP_001013086.1|	-	0.2	11.0	0.6	0.53	9.7	0.1	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Radical_SAM	PF04055.16	gi|124027767|ref|YP_001013087.1|	-	5.2e-11	42.9	0.6	5.4e-09	36.4	0.0	2.4	1	1	1	2	2	2	2	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|124027767|ref|YP_001013087.1|	-	1.2e-08	34.9	0.0	2.3e-08	34.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124027767|ref|YP_001013087.1|	-	3.8e-08	33.5	0.0	1.9e-07	31.2	0.0	2.1	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
GHMP_kinases_C	PF08544.8	gi|124027767|ref|YP_001013087.1|	-	0.051	13.7	0.1	1.6	9.0	0.0	2.8	3	0	0	3	3	3	0	GHMP	kinases	C	terminal
eRF1_1	PF03463.10	gi|124027768|ref|YP_001013088.1|	-	3.9e-30	104.1	0.0	6.8e-30	103.3	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|124027768|ref|YP_001013088.1|	-	4.6e-21	75.1	0.0	9.1e-21	74.2	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|124027768|ref|YP_001013088.1|	-	3e-11	43.7	0.1	5.4e-11	42.9	0.1	1.4	1	0	0	1	1	1	1	eRF1	domain	2
Acetyltransf_1	PF00583.19	gi|124027769|ref|YP_001013089.1|	-	1e-10	41.4	0.0	1.4e-10	41.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_8	PF13523.1	gi|124027769|ref|YP_001013089.1|	-	1.7e-06	27.9	0.0	2e-06	27.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|124027769|ref|YP_001013089.1|	-	4.6e-05	23.4	0.0	6.4e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|124027769|ref|YP_001013089.1|	-	9.8e-05	22.4	0.0	0.00012	22.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|124027769|ref|YP_001013089.1|	-	0.0067	16.1	0.0	0.01	15.5	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|124027769|ref|YP_001013089.1|	-	0.021	14.6	0.0	0.034	14.0	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|124027769|ref|YP_001013089.1|	-	0.094	12.6	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.1	gi|124027769|ref|YP_001013089.1|	-	0.12	12.1	0.1	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
DNA_pol_B	PF00136.16	gi|124027770|ref|YP_001013090.1|	-	1.4e-101	340.6	0.0	2.3e-101	339.9	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|124027770|ref|YP_001013090.1|	-	3.8e-36	124.5	0.0	1.6e-35	122.5	0.0	2.0	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.1	gi|124027770|ref|YP_001013090.1|	-	1.5e-11	44.3	0.0	2.5e-11	43.6	0.0	1.4	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.4	gi|124027770|ref|YP_001013090.1|	-	3.1e-06	26.8	0.0	5.3e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DUF1945	PF09178.5	gi|124027770|ref|YP_001013090.1|	-	0.013	15.3	0.0	0.075	12.9	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1945)
DNA_pol_B_2	PF03175.8	gi|124027770|ref|YP_001013090.1|	-	0.076	11.6	0.2	0.18	10.4	0.1	1.5	1	1	0	1	1	1	0	DNA	polymerase	type	B,	organellar	and	viral
MMR_HSR1	PF01926.18	gi|124027771|ref|YP_001013091.1|	-	8.1e-14	51.5	0.0	2.6e-09	37.0	0.0	2.3	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.18	gi|124027771|ref|YP_001013091.1|	-	8.6e-11	41.9	1.2	0.0017	18.2	0.0	3.1	2	1	1	3	3	3	2	Dynamin	family
DUF258	PF03193.11	gi|124027771|ref|YP_001013091.1|	-	8.9e-09	34.7	0.0	1.3e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
FeoB_N	PF02421.13	gi|124027771|ref|YP_001013091.1|	-	2.6e-08	33.2	0.1	0.0015	17.8	0.0	2.1	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|124027771|ref|YP_001013091.1|	-	1.3e-06	27.9	0.7	1.9e-05	24.1	0.1	2.5	2	1	1	3	3	3	1	Elongation	factor	Tu	GTP	binding	domain
ArgK	PF03308.11	gi|124027771|ref|YP_001013091.1|	-	0.0012	17.6	0.2	0.0078	15.0	0.0	2.0	2	0	0	2	2	2	1	ArgK	protein
AAA_17	PF13207.1	gi|124027771|ref|YP_001013091.1|	-	0.0012	19.6	0.8	0.0051	17.6	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|124027771|ref|YP_001013091.1|	-	0.0055	16.6	1.0	0.15	12.0	0.0	2.7	4	0	0	4	4	4	1	AAA	domain
IIGP	PF05049.8	gi|124027771|ref|YP_001013091.1|	-	0.012	14.4	0.0	0.017	13.9	0.0	1.2	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
cobW	PF02492.14	gi|124027771|ref|YP_001013091.1|	-	0.013	14.9	0.1	0.77	9.1	0.0	2.2	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
PduV-EutP	PF10662.4	gi|124027771|ref|YP_001013091.1|	-	0.015	14.7	0.0	0.2	11.1	0.0	2.3	2	1	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_18	PF13238.1	gi|124027771|ref|YP_001013091.1|	-	0.02	15.2	1.8	0.18	12.0	0.0	2.8	2	1	1	3	3	3	0	AAA	domain
Miro	PF08477.8	gi|124027771|ref|YP_001013091.1|	-	0.027	14.9	0.0	1.3	9.5	0.0	2.2	2	0	0	2	2	2	0	Miro-like	protein
AAA_30	PF13604.1	gi|124027771|ref|YP_001013091.1|	-	0.083	12.4	0.1	0.45	10.0	0.0	1.9	1	1	2	3	3	3	0	AAA	domain
AAA_22	PF13401.1	gi|124027771|ref|YP_001013091.1|	-	0.087	12.9	0.1	1.5	8.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.10	gi|124027772|ref|YP_001013092.1|	-	4.6e-50	169.5	0.0	5.4e-50	169.3	0.0	1.0	1	0	0	1	1	1	1	NTPase
AAA_22	PF13401.1	gi|124027772|ref|YP_001013092.1|	-	0.00057	20.0	0.0	0.003	17.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124027772|ref|YP_001013092.1|	-	0.00084	19.0	0.1	0.0015	18.2	0.1	1.6	1	1	0	1	1	1	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|124027772|ref|YP_001013092.1|	-	0.00095	19.9	0.0	0.0015	19.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
DUF2478	PF10649.4	gi|124027772|ref|YP_001013092.1|	-	0.0022	17.3	0.0	0.0063	15.8	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2478)
IstB_IS21	PF01695.12	gi|124027772|ref|YP_001013092.1|	-	0.0026	17.2	0.0	1.3	8.4	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
MobB	PF03205.9	gi|124027772|ref|YP_001013092.1|	-	0.0026	17.4	0.1	0.0041	16.8	0.1	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|124027772|ref|YP_001013092.1|	-	0.0033	17.4	0.0	0.006	16.5	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
ArgK	PF03308.11	gi|124027772|ref|YP_001013092.1|	-	0.0045	15.8	0.1	0.0084	14.9	0.1	1.4	1	0	0	1	1	1	1	ArgK	protein
NACHT	PF05729.7	gi|124027772|ref|YP_001013092.1|	-	0.0065	16.1	0.0	0.0096	15.5	0.0	1.2	1	0	0	1	1	1	1	NACHT	domain
AAA_18	PF13238.1	gi|124027772|ref|YP_001013092.1|	-	0.0087	16.3	0.0	0.02	15.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124027772|ref|YP_001013092.1|	-	0.0099	15.7	0.1	0.021	14.7	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|124027772|ref|YP_001013092.1|	-	0.012	14.5	0.0	0.016	14.0	0.0	1.2	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
AAA	PF00004.24	gi|124027772|ref|YP_001013092.1|	-	0.017	15.3	0.0	0.03	14.5	0.0	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|124027772|ref|YP_001013092.1|	-	0.021	13.6	0.1	0.034	13.0	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_14	PF13173.1	gi|124027772|ref|YP_001013092.1|	-	0.028	14.3	0.0	0.24	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Arch_ATPase	PF01637.13	gi|124027772|ref|YP_001013092.1|	-	0.029	14.0	0.1	0.047	13.3	0.0	1.4	2	0	0	2	2	1	0	Archaeal	ATPase
RNA_helicase	PF00910.17	gi|124027772|ref|YP_001013092.1|	-	0.034	14.3	0.0	0.053	13.7	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.1	gi|124027772|ref|YP_001013092.1|	-	0.051	13.1	0.0	0.078	12.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|124027772|ref|YP_001013092.1|	-	0.057	13.0	0.0	0.11	12.0	0.0	1.4	2	0	0	2	2	1	0	AAA	domain
AAA_10	PF12846.2	gi|124027772|ref|YP_001013092.1|	-	0.059	12.8	0.0	0.074	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
cobW	PF02492.14	gi|124027772|ref|YP_001013092.1|	-	0.071	12.5	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.18	gi|124027772|ref|YP_001013092.1|	-	0.1	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
DUF2075	PF09848.4	gi|124027772|ref|YP_001013092.1|	-	0.13	11.2	0.0	0.16	10.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Sigma70_r4	PF04545.11	gi|124027773|ref|YP_001013093.1|	-	0.076	12.3	0.0	0.12	11.7	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
ABC_tran	PF00005.22	gi|124027774|ref|YP_001013094.1|	-	1.2e-33	116.2	0.0	1.6e-33	115.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027774|ref|YP_001013094.1|	-	3.8e-11	43.5	0.0	0.00027	21.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|124027774|ref|YP_001013094.1|	-	2.5e-06	26.8	0.0	0.026	13.7	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|124027774|ref|YP_001013094.1|	-	0.00024	21.1	0.7	0.0018	18.2	0.5	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124027774|ref|YP_001013094.1|	-	0.00031	20.2	0.3	0.0006	19.2	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|124027774|ref|YP_001013094.1|	-	0.00053	19.2	0.1	0.001	18.2	0.1	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|124027774|ref|YP_001013094.1|	-	0.002	18.9	0.5	0.004	17.9	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|124027774|ref|YP_001013094.1|	-	0.0024	18.1	0.0	0.0086	16.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|124027774|ref|YP_001013094.1|	-	0.0043	16.5	0.0	0.0066	15.9	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
AAA_22	PF13401.1	gi|124027774|ref|YP_001013094.1|	-	0.0063	16.6	0.3	0.017	15.2	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|124027774|ref|YP_001013094.1|	-	0.0082	16.0	0.0	0.075	12.9	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|124027774|ref|YP_001013094.1|	-	0.016	15.5	0.3	0.027	14.8	0.2	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|124027774|ref|YP_001013094.1|	-	0.034	14.0	0.0	0.086	12.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|124027774|ref|YP_001013094.1|	-	0.036	13.7	0.0	0.061	13.0	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
MMR_HSR1	PF01926.18	gi|124027774|ref|YP_001013094.1|	-	0.043	13.7	0.1	0.1	12.5	0.0	1.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
T2SE	PF00437.15	gi|124027774|ref|YP_001013094.1|	-	0.054	12.3	0.3	0.13	11.1	0.1	1.6	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_25	PF13481.1	gi|124027774|ref|YP_001013094.1|	-	0.055	12.8	0.1	0.16	11.3	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.10	gi|124027774|ref|YP_001013094.1|	-	0.063	12.9	0.0	0.56	9.9	0.0	2.0	2	0	0	2	2	2	0	NTPase
RNA12	PF10443.4	gi|124027774|ref|YP_001013094.1|	-	0.097	11.1	0.0	0.14	10.6	0.0	1.1	1	0	0	1	1	1	0	RNA12	protein
AAA_33	PF13671.1	gi|124027774|ref|YP_001013094.1|	-	0.11	12.3	0.6	0.17	11.7	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|124027774|ref|YP_001013094.1|	-	0.14	11.7	0.1	0.34	10.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|124027774|ref|YP_001013094.1|	-	0.21	10.6	0.0	2.4	7.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
NPCBM_assoc	PF10633.4	gi|124027775|ref|YP_001013095.1|	-	3.1e-13	49.5	1.5	0.064	13.3	0.0	8.1	8	0	0	8	8	8	5	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
MacB_PCD	PF12704.2	gi|124027776|ref|YP_001013096.1|	-	2.7e-33	115.5	0.2	2.7e-33	115.5	0.2	2.1	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|124027776|ref|YP_001013096.1|	-	3.7e-18	65.4	13.1	3.7e-18	65.4	9.1	2.2	2	0	0	2	2	2	1	FtsX-like	permease	family
MCM	PF00493.18	gi|124027777|ref|YP_001013097.1|	-	3.3e-140	466.6	0.1	6.5e-140	465.6	0.0	1.5	2	0	0	2	2	2	1	MCM2/3/5	family
MCM_N	PF14551.1	gi|124027777|ref|YP_001013097.1|	-	1.1e-24	87.2	0.3	5.6e-24	84.9	0.1	2.3	2	0	0	2	2	2	1	MCM	N-terminal	domain
AAA_5	PF07728.9	gi|124027777|ref|YP_001013097.1|	-	3.2e-07	30.1	0.0	1.3e-06	28.1	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.16	gi|124027777|ref|YP_001013097.1|	-	1.2e-06	27.8	0.1	7.1e-05	22.0	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.6	gi|124027777|ref|YP_001013097.1|	-	6.7e-05	22.5	0.0	0.00019	21.0	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF3987	PF13148.1	gi|124027777|ref|YP_001013097.1|	-	0.00051	18.7	0.3	0.0055	15.3	0.2	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3987)
Sigma54_activat	PF00158.21	gi|124027777|ref|YP_001013097.1|	-	0.00078	18.9	0.1	0.0046	16.4	0.1	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Sld5	PF05916.6	gi|124027778|ref|YP_001013098.1|	-	5.4e-09	36.3	3.6	7.9e-09	35.7	2.5	1.2	1	0	0	1	1	1	1	GINS	complex	protein
AAA	PF00004.24	gi|124027779|ref|YP_001013099.1|	-	1.5e-14	54.3	0.6	7.8e-14	52.0	0.0	2.5	4	0	0	4	4	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.10	gi|124027779|ref|YP_001013099.1|	-	8e-09	34.6	0.0	0.0012	17.6	0.0	2.5	2	0	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|124027779|ref|YP_001013099.1|	-	3.4e-07	29.5	0.0	9e-05	21.6	0.0	2.6	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_17	PF13207.1	gi|124027779|ref|YP_001013099.1|	-	4.9e-06	27.3	1.2	0.00011	23.0	0.8	2.7	1	1	0	1	1	1	1	AAA	domain
Bac_DnaA	PF00308.13	gi|124027779|ref|YP_001013099.1|	-	6.1e-06	26.0	0.0	2.7e-05	23.9	0.0	2.0	2	0	0	2	2	2	1	Bacterial	dnaA	protein
DUF815	PF05673.8	gi|124027779|ref|YP_001013099.1|	-	8.6e-06	24.8	0.0	8.6e-05	21.5	0.0	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
DNA_pol3_delta	PF06144.8	gi|124027779|ref|YP_001013099.1|	-	2.3e-05	24.0	0.6	8.2e-05	22.1	0.0	2.2	3	0	0	3	3	3	1	DNA	polymerase	III,	delta	subunit
AAA_16	PF13191.1	gi|124027779|ref|YP_001013099.1|	-	2.5e-05	24.3	0.1	0.00026	21.0	0.1	2.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|124027779|ref|YP_001013099.1|	-	2.9e-05	23.9	0.0	5.9e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|124027779|ref|YP_001013099.1|	-	4.8e-05	23.5	0.0	0.0023	18.0	0.0	2.7	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|124027779|ref|YP_001013099.1|	-	0.00046	19.9	0.3	0.0012	18.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_2	PF07724.9	gi|124027779|ref|YP_001013099.1|	-	0.00084	19.2	0.4	0.0026	17.6	0.0	2.0	2	1	1	3	3	2	1	AAA	domain	(Cdc48	subfamily)
AAA_25	PF13481.1	gi|124027779|ref|YP_001013099.1|	-	0.0026	17.2	0.0	0.016	14.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.8	gi|124027779|ref|YP_001013099.1|	-	0.0055	15.4	0.0	0.84	8.2	0.1	2.2	2	0	0	2	2	2	1	TIP49	C-terminus
DUF258	PF03193.11	gi|124027779|ref|YP_001013099.1|	-	0.014	14.6	0.0	0.034	13.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Arch_ATPase	PF01637.13	gi|124027779|ref|YP_001013099.1|	-	0.015	14.9	0.3	0.08	12.6	0.0	2.3	2	1	0	2	2	2	0	Archaeal	ATPase
RFC1	PF08519.7	gi|124027779|ref|YP_001013099.1|	-	0.02	14.6	0.0	0.041	13.6	0.0	1.5	1	0	0	1	1	1	0	Replication	factor	RFC1	C	terminal	domain
Parvo_NS1	PF01057.12	gi|124027779|ref|YP_001013099.1|	-	0.045	12.6	0.0	0.11	11.3	0.0	1.6	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
AAA_24	PF13479.1	gi|124027779|ref|YP_001013099.1|	-	0.047	13.2	0.0	0.1	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124027779|ref|YP_001013099.1|	-	0.1	12.1	0.0	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MoaC	PF01967.16	gi|124027780|ref|YP_001013100.1|	-	8e-47	158.3	2.5	9.3e-47	158.1	1.7	1.0	1	0	0	1	1	1	1	MoaC	family
DUF3956	PF13104.1	gi|124027780|ref|YP_001013100.1|	-	0.078	12.5	0.0	0.18	11.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3956)
HTH_45	PF14947.1	gi|124027781|ref|YP_001013101.1|	-	0.00021	21.0	0.1	0.00028	20.6	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|124027781|ref|YP_001013101.1|	-	0.00037	20.1	0.5	0.00057	19.5	0.4	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|124027781|ref|YP_001013101.1|	-	0.00067	19.4	0.9	0.00099	18.8	0.6	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|124027781|ref|YP_001013101.1|	-	0.0048	16.9	0.2	0.0058	16.7	0.2	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|124027781|ref|YP_001013101.1|	-	0.012	15.2	1.2	0.02	14.5	0.8	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.1	gi|124027781|ref|YP_001013101.1|	-	0.032	14.2	0.1	0.04	13.9	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|124027781|ref|YP_001013101.1|	-	0.033	13.8	1.0	0.049	13.3	0.7	1.3	1	0	0	1	1	1	0	MarR	family
Sulfolobus_pRN	PF05584.6	gi|124027781|ref|YP_001013101.1|	-	0.05	13.5	2.5	0.049	13.5	1.2	1.4	1	1	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
Cdc6_C	PF09079.6	gi|124027781|ref|YP_001013101.1|	-	0.062	13.0	0.3	0.12	12.0	0.1	1.5	1	1	0	1	1	1	0	CDC6,	C	terminal
TFIIE_alpha	PF02002.12	gi|124027781|ref|YP_001013101.1|	-	0.12	11.9	0.5	0.15	11.6	0.3	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Cdc6_C	PF09079.6	gi|124027782|ref|YP_001013102.1|	-	2.8e-22	78.2	0.3	7.8e-22	76.8	0.2	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|124027782|ref|YP_001013102.1|	-	3.2e-15	56.4	0.0	6.1e-14	52.2	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124027782|ref|YP_001013102.1|	-	4.4e-07	30.0	0.1	4.6e-06	26.7	0.1	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|124027782|ref|YP_001013102.1|	-	3.1e-05	24.1	0.0	8.5e-05	22.7	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|124027782|ref|YP_001013102.1|	-	0.00018	21.2	0.1	0.00029	20.6	0.1	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
PfkB	PF00294.19	gi|124027782|ref|YP_001013102.1|	-	0.0078	15.3	0.0	0.012	14.7	0.0	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
NACHT	PF05729.7	gi|124027782|ref|YP_001013102.1|	-	0.015	14.9	0.0	0.069	12.8	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
AAA_17	PF13207.1	gi|124027782|ref|YP_001013102.1|	-	0.066	14.0	0.1	0.2	12.5	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|124027782|ref|YP_001013102.1|	-	0.1	11.7	0.0	0.22	10.6	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.1	gi|124027782|ref|YP_001013102.1|	-	0.12	12.1	0.0	0.38	10.5	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
Sigma54_activat	PF00158.21	gi|124027782|ref|YP_001013102.1|	-	0.13	11.6	0.0	0.22	10.9	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
Enolase_C	PF00113.17	gi|124027784|ref|YP_001013104.1|	-	2.6e-114	381.1	0.0	3.2e-114	380.8	0.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|124027784|ref|YP_001013104.1|	-	2.3e-55	186.1	0.0	4.6e-55	185.1	0.0	1.5	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.1	gi|124027784|ref|YP_001013104.1|	-	0.0037	17.2	0.0	0.0082	16.1	0.0	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
PsiE	PF06146.7	gi|124027784|ref|YP_001013104.1|	-	0.18	12.0	0.7	2.8	8.2	0.3	2.5	2	0	0	2	2	2	0	Phosphate-starvation-inducible	E
TrkA_N	PF02254.13	gi|124027785|ref|YP_001013105.1|	-	1.3e-25	89.6	6.8	4.9e-25	87.7	4.3	1.9	2	0	0	2	2	2	1	TrkA-N	domain
NAD_binding_10	PF13460.1	gi|124027785|ref|YP_001013105.1|	-	6.4e-09	36.0	2.6	1.2e-08	35.1	1.8	1.4	1	0	0	1	1	1	1	NADH(P)-binding
TrkA_C	PF02080.16	gi|124027785|ref|YP_001013105.1|	-	8.9e-09	34.8	3.3	5.5e-08	32.2	0.1	3.0	2	1	1	3	3	3	1	TrkA-C	domain
NAD_binding_7	PF13241.1	gi|124027785|ref|YP_001013105.1|	-	3.9e-08	33.4	1.3	7.1e-08	32.6	0.9	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.15	gi|124027785|ref|YP_001013105.1|	-	1.2e-07	31.8	0.8	1.8e-07	31.3	0.6	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|124027785|ref|YP_001013105.1|	-	1.4e-07	31.0	0.1	2.9e-07	30.0	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_2	PF03446.10	gi|124027785|ref|YP_001013105.1|	-	5e-07	29.6	0.1	6e-06	26.1	0.1	2.2	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|124027785|ref|YP_001013105.1|	-	8.8e-07	28.4	0.1	2e-06	27.2	0.1	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|124027785|ref|YP_001013105.1|	-	1.4e-06	28.6	0.4	3.2e-06	27.4	0.2	1.8	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.17	gi|124027785|ref|YP_001013105.1|	-	4.3e-06	27.2	0.1	7.7e-06	26.4	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_Gly3P_dh_N	PF01210.18	gi|124027785|ref|YP_001013105.1|	-	2.3e-05	24.2	0.0	3.4e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|124027785|ref|YP_001013105.1|	-	3.2e-05	23.6	0.2	4.4e-05	23.2	0.2	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|124027785|ref|YP_001013105.1|	-	4.8e-05	22.5	0.9	5.7e-05	22.2	0.6	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
FAD_binding_3	PF01494.14	gi|124027785|ref|YP_001013105.1|	-	0.00024	20.3	0.1	0.0004	19.5	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
UPF0146	PF03686.8	gi|124027785|ref|YP_001013105.1|	-	0.00038	20.2	2.4	0.00057	19.6	1.0	2.0	3	1	0	3	3	1	1	Uncharacterised	protein	family	(UPF0146)
DapB_N	PF01113.15	gi|124027785|ref|YP_001013105.1|	-	0.00047	20.0	1.1	0.00072	19.4	0.7	1.3	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
XdhC_C	PF13478.1	gi|124027785|ref|YP_001013105.1|	-	0.00087	19.6	0.3	0.0012	19.1	0.2	1.3	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Epimerase	PF01370.16	gi|124027785|ref|YP_001013105.1|	-	0.0012	18.3	0.1	0.0018	17.7	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ThiF	PF00899.16	gi|124027785|ref|YP_001013105.1|	-	0.0013	18.6	5.0	0.031	14.0	0.2	2.5	1	1	1	2	2	2	1	ThiF	family
DAO	PF01266.19	gi|124027785|ref|YP_001013105.1|	-	0.0015	17.5	0.1	0.0021	17.0	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
adh_short	PF00106.20	gi|124027785|ref|YP_001013105.1|	-	0.0016	18.3	0.8	0.0026	17.6	0.5	1.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|124027785|ref|YP_001013105.1|	-	0.0018	17.4	0.0	0.0026	16.9	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|124027785|ref|YP_001013105.1|	-	0.0053	16.7	0.1	0.014	15.4	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|124027785|ref|YP_001013105.1|	-	0.0062	16.9	0.5	0.015	15.7	0.1	1.9	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
CPSase_L_chain	PF00289.17	gi|124027785|ref|YP_001013105.1|	-	0.0069	16.4	0.8	0.051	13.6	0.2	2.2	1	1	1	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Rossmann-like	PF10727.4	gi|124027785|ref|YP_001013105.1|	-	0.013	15.2	2.7	0.048	13.3	1.5	2.3	1	1	1	2	2	2	0	Rossmann-like	domain
DUF1188	PF06690.6	gi|124027785|ref|YP_001013105.1|	-	0.013	14.6	0.1	0.02	14.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
CoA_binding_2	PF13380.1	gi|124027785|ref|YP_001013105.1|	-	0.02	15.0	2.5	0.044	13.9	1.7	1.8	1	1	0	1	1	1	0	CoA	binding	domain
NmrA	PF05368.8	gi|124027785|ref|YP_001013105.1|	-	0.024	13.9	1.5	0.087	12.0	0.7	1.8	2	0	0	2	2	2	0	NmrA-like	family
ADH_zinc_N	PF00107.21	gi|124027785|ref|YP_001013105.1|	-	0.024	14.1	3.2	0.86	9.1	0.1	2.3	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
RmlD_sub_bind	PF04321.12	gi|124027785|ref|YP_001013105.1|	-	0.03	13.2	0.2	0.053	12.4	0.1	1.4	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
Pyr_redox_2	PF07992.9	gi|124027785|ref|YP_001013105.1|	-	0.051	13.4	0.5	0.093	12.5	0.2	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|124027785|ref|YP_001013105.1|	-	0.089	11.6	0.1	0.11	11.2	0.1	1.1	1	0	0	1	1	1	0	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|124027785|ref|YP_001013105.1|	-	0.1	11.5	0.1	0.2	10.5	0.0	1.4	2	0	0	2	2	1	0	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|124027785|ref|YP_001013105.1|	-	0.12	10.8	0.2	0.16	10.3	0.2	1.1	1	0	0	1	1	1	0	HI0933-like	protein
MS_channel	PF00924.13	gi|124027786|ref|YP_001013106.1|	-	1.4e-09	37.5	4.3	1.4e-09	37.5	3.0	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
DUF2227	PF09988.4	gi|124027786|ref|YP_001013106.1|	-	1.9	8.0	6.9	1	8.9	1.6	2.4	2	1	1	3	3	3	0	Uncharacterized	metal-binding	protein	(DUF2227)
MgtE	PF01769.11	gi|124027786|ref|YP_001013106.1|	-	2.2	8.5	12.2	0.71	10.1	4.9	2.1	1	1	1	2	2	2	0	Divalent	cation	transporter
Cren7	PF11520.3	gi|124027787|ref|YP_001013107.1|	-	1e-05	25.0	0.3	4.6e-05	22.9	0.1	2.0	1	1	1	2	2	2	1	Chromatin	protein	Cren7
Zn_Tnp_IS1595	PF12760.2	gi|124027787|ref|YP_001013107.1|	-	1.9e-05	24.3	1.2	0.095	12.5	0.1	2.2	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124027787|ref|YP_001013107.1|	-	2e-05	23.9	3.8	0.0064	15.9	0.1	2.3	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
FYDLN_acid	PF09538.5	gi|124027787|ref|YP_001013107.1|	-	0.00011	22.7	0.4	0.22	12.1	0.1	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(FYDLN_acid)
DUF1610	PF07754.6	gi|124027787|ref|YP_001013107.1|	-	0.00033	20.6	7.2	0.066	13.3	0.8	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
PhnA_Zn_Ribbon	PF08274.7	gi|124027787|ref|YP_001013107.1|	-	0.00043	19.9	0.4	0.051	13.3	0.0	2.2	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.1	gi|124027787|ref|YP_001013107.1|	-	0.00047	19.2	3.8	0.3	10.3	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
CpXC	PF14353.1	gi|124027787|ref|YP_001013107.1|	-	0.0011	18.9	0.0	0.0016	18.4	0.0	1.3	1	0	0	1	1	1	1	CpXC	protein
zinc_ribbon_2	PF13240.1	gi|124027787|ref|YP_001013107.1|	-	0.0014	18.0	1.8	0.51	9.8	0.1	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124027787|ref|YP_001013107.1|	-	0.0015	17.7	5.1	0.33	10.3	0.1	3.0	3	0	0	3	3	3	2	TFIIB	zinc-binding
zf-ISL3	PF14690.1	gi|124027787|ref|YP_001013107.1|	-	0.0017	18.3	1.3	1	9.4	0.1	2.3	2	0	0	2	2	2	2	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-FPG_IleRS	PF06827.9	gi|124027787|ref|YP_001013107.1|	-	0.0018	17.8	3.8	0.23	11.1	0.4	2.6	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
zf-nanos	PF05741.8	gi|124027787|ref|YP_001013107.1|	-	0.0021	17.9	0.9	0.72	9.8	0.0	2.2	1	1	1	2	2	2	1	Nanos	RNA	binding	domain
TFIIS_C	PF01096.13	gi|124027787|ref|YP_001013107.1|	-	0.0021	17.6	2.9	0.036	13.6	0.1	2.2	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
Zn-ribbon_8	PF09723.5	gi|124027787|ref|YP_001013107.1|	-	0.0033	17.3	0.8	1.6	8.7	0.1	2.3	2	0	0	2	2	2	1	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124027787|ref|YP_001013107.1|	-	0.0035	16.8	2.0	0.19	11.3	0.1	2.5	2	0	0	2	2	2	1	zinc-ribbon	domain
UPF0547	PF10571.4	gi|124027787|ref|YP_001013107.1|	-	0.0045	16.6	4.6	0.1	12.3	0.2	2.3	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
zf-3CxxC	PF13695.1	gi|124027787|ref|YP_001013107.1|	-	0.0055	16.9	0.2	0.018	15.2	0.0	1.9	2	0	0	2	2	2	1	Zinc-binding	domain
Rubredoxin	PF00301.15	gi|124027787|ref|YP_001013107.1|	-	0.0057	16.4	2.3	1.1	9.1	0.1	2.3	2	0	0	2	2	2	1	Rubredoxin
DNA_RNApol_7kD	PF03604.8	gi|124027787|ref|YP_001013107.1|	-	0.0087	15.5	0.7	3.2	7.3	0.0	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
OrfB_Zn_ribbon	PF07282.6	gi|124027787|ref|YP_001013107.1|	-	0.0087	15.6	0.4	1.8	8.3	0.0	2.4	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
zf-IS66	PF13005.2	gi|124027787|ref|YP_001013107.1|	-	0.01	15.7	1.1	2.2	8.3	0.0	2.5	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DZR	PF12773.2	gi|124027787|ref|YP_001013107.1|	-	0.011	15.5	2.1	0.09	12.6	1.5	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|124027787|ref|YP_001013107.1|	-	0.017	14.5	0.1	2.1	7.8	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|124027787|ref|YP_001013107.1|	-	0.018	15.0	1.2	2.7	8.0	0.1	2.3	2	0	0	2	2	2	0	zinc-finger
DUF4379	PF14311.1	gi|124027787|ref|YP_001013107.1|	-	0.018	14.8	0.1	0.018	14.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
zf-HIT	PF04438.11	gi|124027787|ref|YP_001013107.1|	-	0.034	13.7	3.6	0.43	10.2	0.9	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
DUF2296	PF10058.4	gi|124027787|ref|YP_001013107.1|	-	0.036	13.8	1.5	3	7.6	0.1	2.4	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Ogr_Delta	PF04606.7	gi|124027787|ref|YP_001013107.1|	-	0.042	13.5	1.8	1.3	8.7	0.1	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zinc_ribbon_4	PF13717.1	gi|124027787|ref|YP_001013107.1|	-	0.046	13.4	4.5	0.63	9.7	0.4	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ZPR1	PF03367.8	gi|124027787|ref|YP_001013107.1|	-	0.05	12.7	0.3	0.099	11.8	0.2	1.8	1	1	0	1	1	1	0	ZPR1	zinc-finger	domain
Nudix_N_2	PF14803.1	gi|124027787|ref|YP_001013107.1|	-	0.057	13.1	2.7	7.1	6.4	0.1	2.7	3	0	0	3	3	2	0	Nudix	N-terminal
zf-Mss51	PF13824.1	gi|124027787|ref|YP_001013107.1|	-	0.065	13.1	0.3	10	6.0	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
RRN7	PF11781.3	gi|124027787|ref|YP_001013107.1|	-	0.077	12.5	2.4	4.8	6.7	0.1	2.4	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-TFIIB	PF13453.1	gi|124027787|ref|YP_001013107.1|	-	0.079	12.1	0.2	6.2	6.1	0.0	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
HypA	PF01155.14	gi|124027787|ref|YP_001013107.1|	-	0.082	12.5	0.1	0.19	11.4	0.1	1.6	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Gin	PF10764.4	gi|124027787|ref|YP_001013107.1|	-	0.092	12.4	0.1	0.66	9.7	0.0	2.1	2	0	0	2	2	2	0	Inhibitor	of	sigma-G	Gin
zf-UDP	PF14569.1	gi|124027787|ref|YP_001013107.1|	-	0.095	12.4	0.1	4.2	7.1	0.0	2.2	2	0	0	2	2	2	0	Zinc-binding	RING-finger
zf-H2C2_2	PF13465.1	gi|124027787|ref|YP_001013107.1|	-	0.11	12.8	1.6	11	6.4	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-C2H2	PF00096.21	gi|124027787|ref|YP_001013107.1|	-	0.2	12.0	2.2	12	6.5	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Cys_rich_KTR	PF14205.1	gi|124027787|ref|YP_001013107.1|	-	0.23	10.9	1.3	14	5.2	0.1	2.4	2	0	0	2	2	2	0	Cysteine-rich	KTR
Prim_Zn_Ribbon	PF08273.7	gi|124027787|ref|YP_001013107.1|	-	0.24	11.5	2.1	4.4	7.4	0.0	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF329	PF03884.9	gi|124027787|ref|YP_001013107.1|	-	0.24	10.9	1.4	5.4	6.6	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
Prok-RING_4	PF14447.1	gi|124027787|ref|YP_001013107.1|	-	0.27	10.8	2.2	1.3	8.6	0.1	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-CCHC_5	PF14787.1	gi|124027787|ref|YP_001013107.1|	-	0.41	10.1	2.7	2.2	7.8	0.3	2.3	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
Trm112p	PF03966.11	gi|124027787|ref|YP_001013107.1|	-	0.85	10.0	2.7	2.5	8.5	0.7	2.4	2	1	0	2	2	2	0	Trm112p-like	protein
Cys_rich_CPXG	PF14255.1	gi|124027787|ref|YP_001013107.1|	-	0.92	9.3	4.1	1.7	8.5	0.0	2.7	3	0	0	3	3	3	0	Cysteine-rich	CPXCG
Sgf11	PF08209.6	gi|124027787|ref|YP_001013107.1|	-	1.5	8.1	3.7	3.7	6.9	0.3	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF35_N	PF12172.3	gi|124027787|ref|YP_001013107.1|	-	2.2	8.3	5.1	16	5.5	0.3	2.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Peptidase_S24	PF00717.18	gi|124027788|ref|YP_001013108.1|	-	1e-08	34.7	0.1	1.4e-08	34.2	0.1	1.3	1	0	0	1	1	1	1	Peptidase	S24-like
Topoisom_bac	PF01131.15	gi|124027789|ref|YP_001013109.1|	-	4.8e-106	354.9	0.0	5.8e-106	354.6	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|124027789|ref|YP_001013109.1|	-	1.7e-11	43.9	0.0	3.4e-11	42.9	0.0	1.5	1	0	0	1	1	1	1	Toprim	domain
SPOR	PF05036.8	gi|124027789|ref|YP_001013109.1|	-	0.0031	17.6	0.1	0.0091	16.1	0.1	1.8	1	0	0	1	1	1	1	Sporulation	related	domain
RNA_pol_Rpb6	PF01192.17	gi|124027790|ref|YP_001013110.1|	-	1.6e-13	50.1	0.0	2.7e-13	49.4	0.0	1.4	1	1	0	1	1	1	1	RNA	polymerase	Rpb6
Cpn60_TCP1	PF00118.19	gi|124027791|ref|YP_001013111.1|	-	4.6e-164	546.6	8.5	5.3e-164	546.4	5.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Thioredoxin	PF00085.15	gi|124027792|ref|YP_001013112.1|	-	0.036	13.7	0.0	0.048	13.3	0.0	1.1	1	0	0	1	1	1	0	Thioredoxin
HCV_NS2	PF01538.13	gi|124027792|ref|YP_001013112.1|	-	0.083	12.3	0.0	0.11	11.9	0.0	1.1	1	0	0	1	1	1	0	Hepatitis	C	virus	non-structural	protein	NS2
TraF	PF13728.1	gi|124027792|ref|YP_001013112.1|	-	0.15	11.4	0.0	0.27	10.7	0.0	1.3	1	0	0	1	1	1	0	F	plasmid	transfer	operon	protein
zf-ribbon_3	PF13248.1	gi|124027793|ref|YP_001013113.1|	-	0.0011	18.1	1.3	0.0016	17.5	0.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|124027793|ref|YP_001013113.1|	-	0.028	14.2	0.4	0.049	13.4	0.3	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|124027793|ref|YP_001013113.1|	-	0.064	12.5	1.2	0.18	11.1	0.8	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-H2C2_2	PF13465.1	gi|124027793|ref|YP_001013113.1|	-	0.21	11.9	2.0	2.9	8.3	0.1	2.5	1	1	1	2	2	2	0	Zinc-finger	double	domain
Transglut_core2	PF13369.1	gi|124027794|ref|YP_001013114.1|	-	0.041	13.3	0.1	0.048	13.1	0.1	1.1	1	0	0	1	1	1	0	Transglutaminase-like	superfamily
PNP_UDP_1	PF01048.15	gi|124027795|ref|YP_001013115.1|	-	4.2e-40	137.1	1.6	5.4e-40	136.8	1.1	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
LytR_C	PF13399.1	gi|124027796|ref|YP_001013116.1|	-	0.0022	18.3	1.0	0.26	11.6	0.3	2.4	1	1	1	2	2	2	2	LytR	cell	envelope-related	transcriptional	attenuator
Glucodextran_N	PF09137.6	gi|124027796|ref|YP_001013116.1|	-	0.022	14.0	0.0	0.022	14.0	0.0	1.1	1	0	0	1	1	1	0	Glucodextranase,	domain	N
SBP_bac_5	PF00496.17	gi|124027796|ref|YP_001013116.1|	-	0.1	11.3	0.0	0.13	11.0	0.0	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
HTH_23	PF13384.1	gi|124027798|ref|YP_001013118.1|	-	0.017	14.7	0.1	0.062	12.9	0.1	1.8	2	0	0	2	2	2	0	Homeodomain-like	domain
NAD_binding_7	PF13241.1	gi|124027798|ref|YP_001013118.1|	-	0.024	14.9	0.1	0.1	12.8	0.0	1.8	1	1	0	1	1	1	0	Putative	NAD(P)-binding
HTH_1	PF00126.22	gi|124027798|ref|YP_001013118.1|	-	0.079	12.7	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF2042	PF09743.4	gi|124027798|ref|YP_001013118.1|	-	0.1	11.8	0.0	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2042)
Thioredoxin_3	PF13192.1	gi|124027799|ref|YP_001013119.1|	-	1.5e-33	114.4	1.5	7.8e-18	64.0	0.0	2.3	2	0	0	2	2	2	2	Thioredoxin	domain
Thioredoxin	PF00085.15	gi|124027799|ref|YP_001013119.1|	-	4.2e-06	26.3	0.3	0.078	12.6	0.0	2.2	2	0	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.1	gi|124027799|ref|YP_001013119.1|	-	0.00011	22.3	4.8	0.25	11.5	0.2	3.7	2	2	0	2	2	2	2	Thioredoxin-like	domain
Thioredoxin_4	PF13462.1	gi|124027799|ref|YP_001013119.1|	-	0.0017	18.3	3.5	1.2	9.1	0.0	3.9	2	2	2	4	4	4	1	Thioredoxin
YfmQ	PF10787.4	gi|124027799|ref|YP_001013119.1|	-	0.0019	17.5	0.1	0.0034	16.7	0.1	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	from	bacillus	cereus	group
Thioredoxin_9	PF14595.1	gi|124027799|ref|YP_001013119.1|	-	0.0023	17.4	0.2	0.083	12.4	0.0	2.2	2	0	0	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.19	gi|124027799|ref|YP_001013119.1|	-	0.0033	17.3	8.9	0.42	10.6	1.1	3.9	3	2	0	3	3	3	2	Glutaredoxin
TrbC_Ftype	PF09673.5	gi|124027799|ref|YP_001013119.1|	-	0.0055	16.2	0.1	1.8	8.1	0.0	2.4	2	0	0	2	2	2	2	Type-F	conjugative	transfer	system	pilin	assembly	protein
GatB_N	PF02934.10	gi|124027800|ref|YP_001013120.1|	-	9.7e-81	270.7	0.0	1.5e-80	270.2	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|124027800|ref|YP_001013120.1|	-	9.7e-24	83.7	0.4	9.7e-24	83.7	0.3	2.8	4	0	0	4	4	4	1	GatB	domain
GAD	PF02938.9	gi|124027800|ref|YP_001013120.1|	-	1.2e-20	73.4	0.0	5.8e-20	71.2	0.0	2.2	2	0	0	2	2	2	1	GAD	domain
YqeY	PF09424.5	gi|124027800|ref|YP_001013120.1|	-	4.5e-06	26.5	0.4	4.5e-06	26.5	0.2	2.1	2	0	0	2	2	2	1	Yqey-like	protein
tRNA_synt_1c_R1	PF04558.10	gi|124027800|ref|YP_001013120.1|	-	0.0014	18.1	0.1	0.0031	17.0	0.1	1.5	1	0	0	1	1	1	1	Glutaminyl-tRNA	synthetase,	non-specific	RNA	binding	region	part	1
Mor	PF08765.6	gi|124027800|ref|YP_001013120.1|	-	0.0095	15.6	0.0	0.058	13.1	0.0	2.4	2	0	0	2	2	2	1	Mor	transcription	activator	family
DUF2999	PF11212.3	gi|124027800|ref|YP_001013120.1|	-	0.095	12.7	0.1	1.8	8.6	0.0	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2999)
RHH_1	PF01402.16	gi|124027800|ref|YP_001013120.1|	-	9.1	6.3	9.2	3.1	7.8	0.0	4.8	5	0	0	5	5	5	0	Ribbon-helix-helix	protein,	copG	family
Asparaginase	PF00710.15	gi|124027801|ref|YP_001013121.1|	-	3.4e-99	331.6	0.1	4.2e-99	331.3	0.0	1.0	1	0	0	1	1	1	1	Asparaginase
PI-PLC-Y	PF00387.14	gi|124027801|ref|YP_001013121.1|	-	0.024	14.6	0.0	0.062	13.2	0.0	1.6	1	0	0	1	1	1	0	Phosphatidylinositol-specific	phospholipase	C,	Y	domain
Ribosomal_S30	PF04758.9	gi|124027802|ref|YP_001013122.1|	-	2.1e-11	43.3	3.0	2.5e-11	43.1	2.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S30
Alba	PF01918.16	gi|124027803|ref|YP_001013123.1|	-	1.5e-19	69.3	1.5	2e-19	68.9	1.0	1.2	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.3	gi|124027803|ref|YP_001013123.1|	-	0.036	13.7	0.4	0.047	13.3	0.2	1.3	1	1	0	1	1	1	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
Topoisom_bac	PF01131.15	gi|124027804|ref|YP_001013124.1|	-	3.4e-96	322.5	0.0	5e-96	321.9	0.0	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|124027804|ref|YP_001013124.1|	-	6.4e-19	67.7	0.0	1.9e-18	66.2	0.0	1.9	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.24	gi|124027804|ref|YP_001013124.1|	-	8.5e-15	54.6	0.0	2.3e-14	53.2	0.0	1.8	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|124027804|ref|YP_001013124.1|	-	2.4e-05	24.0	0.0	0.16	11.8	0.0	3.4	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|124027804|ref|YP_001013124.1|	-	0.00014	21.7	0.0	0.00028	20.7	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SRP54	PF00448.17	gi|124027804|ref|YP_001013124.1|	-	0.00037	20.0	0.0	0.065	12.6	0.0	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|124027804|ref|YP_001013124.1|	-	0.00073	18.9	0.2	0.0088	15.4	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|124027804|ref|YP_001013124.1|	-	0.00087	18.9	0.1	0.0023	17.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
zf-ribbon_3	PF13248.1	gi|124027804|ref|YP_001013124.1|	-	0.0022	17.1	1.2	0.0041	16.2	0.8	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
AAA_22	PF13401.1	gi|124027804|ref|YP_001013124.1|	-	0.0029	17.7	0.0	0.18	11.9	0.0	3.1	2	0	0	2	2	2	1	AAA	domain
Toprim_4	PF13662.1	gi|124027804|ref|YP_001013124.1|	-	0.0052	16.7	1.2	0.021	14.8	0.0	2.8	3	0	0	3	3	1	1	Toprim	domain
AAA_19	PF13245.1	gi|124027804|ref|YP_001013124.1|	-	0.0054	16.4	0.1	0.05	13.3	0.1	2.8	1	0	0	1	1	1	1	Part	of	AAA	domain
DZR	PF12773.2	gi|124027804|ref|YP_001013124.1|	-	0.0099	15.6	0.5	0.018	14.8	0.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
IstB_IS21	PF01695.12	gi|124027804|ref|YP_001013124.1|	-	0.011	15.1	0.0	0.027	13.9	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
MobB	PF03205.9	gi|124027804|ref|YP_001013124.1|	-	0.022	14.4	0.1	0.098	12.3	0.0	2.2	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SecA_DEAD	PF07517.9	gi|124027804|ref|YP_001013124.1|	-	0.032	13.5	0.1	0.086	12.1	0.1	1.7	1	1	0	1	1	1	0	SecA	DEAD-like	domain
zinc_ribbon_2	PF13240.1	gi|124027804|ref|YP_001013124.1|	-	0.11	12.0	2.3	0.19	11.2	1.6	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
ABC_tran	PF00005.22	gi|124027804|ref|YP_001013124.1|	-	0.15	12.3	0.0	0.4	10.9	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
HypA	PF01155.14	gi|124027804|ref|YP_001013124.1|	-	0.16	11.6	0.2	0.41	10.3	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
ATP-synt_ab	PF00006.20	gi|124027804|ref|YP_001013124.1|	-	0.18	11.2	0.0	0.32	10.4	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NRDD	PF13597.1	gi|124027804|ref|YP_001013124.1|	-	0.25	9.3	0.2	0.39	8.7	0.1	1.2	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
AAA_23	PF13476.1	gi|124027804|ref|YP_001013124.1|	-	0.51	10.6	2.2	3.8	7.7	1.5	2.2	1	1	0	1	1	1	0	AAA	domain
UPF0547	PF10571.4	gi|124027804|ref|YP_001013124.1|	-	2.3	7.9	6.2	4.9	6.9	0.3	2.2	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|124027804|ref|YP_001013124.1|	-	4	7.4	4.0	13	5.8	2.7	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
NAD_synthase	PF02540.12	gi|124027805|ref|YP_001013125.1|	-	2.1e-82	275.6	0.0	2.4e-82	275.4	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|124027805|ref|YP_001013125.1|	-	5.3e-08	31.7	0.0	8.1e-06	24.6	0.0	2.1	2	0	0	2	2	2	2	tRNA	methyl	transferase
QueC	PF06508.8	gi|124027805|ref|YP_001013125.1|	-	0.012	14.8	0.0	0.024	13.9	0.0	1.4	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
Sigma70_r3	PF04539.11	gi|124027805|ref|YP_001013125.1|	-	0.018	14.8	0.0	0.062	13.1	0.0	1.9	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_23	PF13384.1	gi|124027805|ref|YP_001013125.1|	-	0.045	13.4	4.4	0.05	13.2	0.0	3.3	5	0	0	5	5	5	0	Homeodomain-like	domain
Asn_synthase	PF00733.16	gi|124027805|ref|YP_001013125.1|	-	0.1	12.1	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
ATP_bind_3	PF01171.15	gi|124027805|ref|YP_001013125.1|	-	0.11	11.9	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	PP-loop	family
YjeF_N	PF03853.10	gi|124027806|ref|YP_001013126.1|	-	8.8e-54	181.6	0.1	2.5e-52	176.8	0.0	2.6	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
Carb_kinase	PF01256.12	gi|124027806|ref|YP_001013126.1|	-	5.4e-53	179.7	0.3	1e-52	178.8	0.2	1.4	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.10	gi|124027806|ref|YP_001013126.1|	-	2.7e-09	36.5	0.3	1.1e-08	34.5	0.2	1.9	1	1	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.7	gi|124027806|ref|YP_001013126.1|	-	8.8e-05	21.8	0.0	0.0002	20.6	0.0	1.5	1	1	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.19	gi|124027806|ref|YP_001013126.1|	-	0.0067	15.5	1.5	0.0091	15.1	0.0	1.8	2	0	0	2	2	2	1	pfkB	family	carbohydrate	kinase
ADH_zinc_N	PF00107.21	gi|124027806|ref|YP_001013126.1|	-	0.0087	15.6	0.0	0.037	13.5	0.0	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
TPP_enzyme_C	PF02775.16	gi|124027806|ref|YP_001013126.1|	-	0.012	15.1	1.0	3.6	7.1	0.0	2.6	2	0	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
KR	PF08659.5	gi|124027806|ref|YP_001013126.1|	-	0.11	12.1	1.5	0.4	10.3	0.1	2.4	3	0	0	3	3	3	0	KR	domain
DUF498	PF04430.9	gi|124027806|ref|YP_001013126.1|	-	0.11	12.0	0.0	0.41	10.2	0.0	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF498/DUF598)
TBP	PF00352.16	gi|124027807|ref|YP_001013127.1|	-	4.3e-72	237.5	0.5	2.6e-35	119.6	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|124027807|ref|YP_001013127.1|	-	0.0003	20.7	0.0	0.22	11.6	0.0	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Ribosomal_S30AE	PF02482.14	gi|124027807|ref|YP_001013127.1|	-	0.0081	16.5	0.1	2.4	8.6	0.0	2.4	2	0	0	2	2	2	2	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
HMA	PF00403.21	gi|124027807|ref|YP_001013127.1|	-	0.045	13.8	1.9	1.6	8.9	0.3	3.0	3	0	0	3	3	3	0	Heavy-metal-associated	domain
CART	PF06373.6	gi|124027807|ref|YP_001013127.1|	-	0.059	13.3	0.2	1.1	9.1	0.0	2.2	2	0	0	2	2	2	0	Cocaine	and	amphetamine	regulated	transcript	protein	(CART)
Spore_YhaL	PF14147.1	gi|124027807|ref|YP_001013127.1|	-	0.093	12.1	0.6	2	7.9	0.1	2.6	3	0	0	3	3	3	0	Sporulation	protein	YhaL
PDH	PF02153.12	gi|124027808|ref|YP_001013128.1|	-	0.053	12.4	0.0	0.055	12.3	0.0	1.1	1	0	0	1	1	1	0	Prephenate	dehydrogenase
Usp	PF00582.21	gi|124027811|ref|YP_001013131.1|	-	4.9e-22	78.6	1.0	1.4e-21	77.1	0.7	1.7	1	1	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.16	gi|124027811|ref|YP_001013131.1|	-	4.4e-06	26.4	0.0	5.4e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
Pyr_redox	PF00070.22	gi|124027811|ref|YP_001013131.1|	-	0.021	15.2	0.0	0.038	14.3	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Peripla_BP_4	PF13407.1	gi|124027811|ref|YP_001013131.1|	-	0.08	12.2	0.0	0.11	11.8	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
AP_endonuc_2	PF01261.19	gi|124027811|ref|YP_001013131.1|	-	0.093	12.0	0.0	0.12	11.6	0.0	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Amidohydro_3	PF07969.6	gi|124027811|ref|YP_001013131.1|	-	0.13	11.4	0.0	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	Amidohydrolase	family
Gp_dh_C	PF02800.15	gi|124027812|ref|YP_001013132.1|	-	4.8e-24	84.6	0.2	6.9e-24	84.0	0.1	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.19	gi|124027812|ref|YP_001013132.1|	-	1.2e-20	73.9	0.0	2.7e-19	69.6	0.0	2.6	2	1	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|124027812|ref|YP_001013132.1|	-	6.9e-13	48.5	0.0	1.6e-12	47.3	0.0	1.7	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|124027812|ref|YP_001013132.1|	-	5e-07	30.0	0.0	1e-06	29.0	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|124027812|ref|YP_001013132.1|	-	1.6e-05	25.3	0.4	9.6e-05	22.8	0.0	2.4	2	1	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.14	gi|124027812|ref|YP_001013132.1|	-	0.00046	19.3	0.8	0.015	14.4	0.1	2.7	2	1	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.11	gi|124027812|ref|YP_001013132.1|	-	0.00058	20.2	0.0	0.0014	19.0	0.0	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
PGK	PF00162.14	gi|124027813|ref|YP_001013133.1|	-	3.2e-115	384.7	0.0	3.6e-115	384.6	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
DEAD_assoc	PF08494.6	gi|124027814|ref|YP_001013134.1|	-	1.5e-58	197.6	0.7	7.9e-58	195.2	0.1	2.3	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.24	gi|124027814|ref|YP_001013134.1|	-	1.6e-28	99.3	0.0	2e-27	95.7	0.0	2.3	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|124027814|ref|YP_001013134.1|	-	6e-14	51.6	0.0	2.9e-13	49.4	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|124027814|ref|YP_001013134.1|	-	4.5e-05	23.3	0.0	0.00016	21.5	0.0	1.9	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DUF4130	PF13566.1	gi|124027814|ref|YP_001013134.1|	-	0.011	15.2	0.1	0.052	13.1	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4130
AAA_22	PF13401.1	gi|124027814|ref|YP_001013134.1|	-	0.72	10.0	4.9	77	3.4	0.1	4.3	4	1	0	4	4	4	0	AAA	domain
RHH_1	PF01402.16	gi|124027815|ref|YP_001013135.1|	-	2.7e-07	30.1	0.1	4.6e-07	29.4	0.0	1.4	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|124027815|ref|YP_001013135.1|	-	0.011	15.3	0.3	0.14	11.8	0.2	2.1	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
PDDEXK_1	PF12705.2	gi|124027817|ref|YP_001013137.1|	-	4.1e-09	36.2	2.7	3e-08	33.3	1.8	2.2	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.12	gi|124027817|ref|YP_001013137.1|	-	2.6e-05	24.1	0.0	5e-05	23.2	0.0	1.5	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_3	PF13366.1	gi|124027817|ref|YP_001013137.1|	-	0.012	15.6	0.0	0.02	14.9	0.0	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
Exo5	PF09810.4	gi|124027817|ref|YP_001013137.1|	-	0.013	14.7	0.5	5	6.2	0.9	2.2	2	0	0	2	2	2	0	Exonuclease	V	-	a	5'	deoxyribonuclease
PHP_C	PF13263.1	gi|124027818|ref|YP_001013138.1|	-	1.8e-17	62.5	0.1	4.1e-17	61.4	0.1	1.7	1	0	0	1	1	1	1	PHP-associated
PHP	PF02811.14	gi|124027818|ref|YP_001013138.1|	-	1e-15	57.9	0.0	3.8e-14	52.8	0.0	2.3	1	1	0	1	1	1	1	PHP	domain
TIM	PF00121.13	gi|124027819|ref|YP_001013139.1|	-	7.2e-27	94.0	0.0	1.6e-16	60.1	0.0	2.0	1	1	1	2	2	2	2	Triosephosphate	isomerase
IGPS	PF00218.16	gi|124027819|ref|YP_001013139.1|	-	5.8e-08	32.1	0.2	7.9e-07	28.3	0.0	2.3	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
ThiG	PF05690.9	gi|124027819|ref|YP_001013139.1|	-	2.4e-06	26.7	1.0	4.1e-06	26.0	0.7	1.3	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
PcrB	PF01884.12	gi|124027819|ref|YP_001013139.1|	-	0.021	14.0	0.5	0.034	13.3	0.3	1.4	1	1	0	1	1	1	0	PcrB	family
FMN_dh	PF01070.13	gi|124027819|ref|YP_001013139.1|	-	0.031	13.1	0.5	0.031	13.1	0.3	1.6	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
tRNA-synt_1b	PF00579.20	gi|124027820|ref|YP_001013140.1|	-	5.8e-38	130.6	0.0	8.5e-38	130.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
DUF433	PF04255.9	gi|124027820|ref|YP_001013140.1|	-	0.0044	16.4	0.1	0.13	11.6	0.0	2.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF433)
CCG	PF02754.11	gi|124027821|ref|YP_001013141.1|	-	7.3e-13	48.3	0.0	3.7e-09	36.4	0.0	2.3	2	0	0	2	2	2	2	Cysteine-rich	domain
DUF162	PF02589.10	gi|124027822|ref|YP_001013142.1|	-	1.2e-55	187.9	0.3	1.9e-55	187.2	0.2	1.3	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|124027822|ref|YP_001013142.1|	-	2.4e-11	43.4	4.9	4.2e-11	42.6	3.4	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124027822|ref|YP_001013142.1|	-	5.8e-08	32.4	6.5	1.3e-07	31.3	4.5	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124027822|ref|YP_001013142.1|	-	4.8e-07	30.0	5.0	0.0021	18.4	0.3	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124027822|ref|YP_001013142.1|	-	1.5e-06	28.5	5.5	3.9e-06	27.1	3.8	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124027822|ref|YP_001013142.1|	-	2.4e-06	26.8	13.2	0.0023	17.4	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|124027822|ref|YP_001013142.1|	-	7.2e-06	26.1	7.4	2.9e-05	24.2	5.1	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124027822|ref|YP_001013142.1|	-	1.7e-05	24.4	10.7	0.0025	17.6	0.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|124027822|ref|YP_001013142.1|	-	3.8e-05	23.9	6.8	0.00014	22.1	4.8	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027822|ref|YP_001013142.1|	-	0.00088	19.0	10.8	0.02	14.7	0.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|124027822|ref|YP_001013142.1|	-	0.0018	17.8	2.3	0.94	9.1	0.0	2.6	2	0	0	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_4	PF12800.2	gi|124027822|ref|YP_001013142.1|	-	0.0048	17.1	13.1	0.028	14.7	1.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124027822|ref|YP_001013142.1|	-	0.0076	16.0	11.3	0.16	11.8	7.9	2.2	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|124027822|ref|YP_001013142.1|	-	0.038	14.5	16.7	0.65	10.6	2.7	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|124027822|ref|YP_001013142.1|	-	0.046	14.4	10.5	0.38	11.5	7.4	2.2	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|124027822|ref|YP_001013142.1|	-	1.4	9.3	10.6	1.5	9.2	1.1	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|124027822|ref|YP_001013142.1|	-	9.7	6.8	7.5	24	5.5	0.6	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF447	PF04289.7	gi|124027823|ref|YP_001013143.1|	-	3.8e-09	36.3	0.0	4.3e-09	36.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
MAF_flag10	PF01973.13	gi|124027824|ref|YP_001013144.1|	-	3.4e-25	88.5	0.0	4.6e-25	88.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
TPK_catalytic	PF04263.11	gi|124027824|ref|YP_001013144.1|	-	6.9e-05	22.4	0.0	0.0006	19.3	0.0	2.2	2	0	0	2	2	2	1	Thiamin	pyrophosphokinase,	catalytic	domain
GHMP_kinases_N	PF00288.21	gi|124027825|ref|YP_001013145.1|	-	3.6e-05	23.7	0.4	7.5e-05	22.7	0.3	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|124027825|ref|YP_001013145.1|	-	0.0021	18.2	0.1	0.018	15.2	0.0	2.4	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
Helicase_RecD	PF05127.9	gi|124027826|ref|YP_001013146.1|	-	9.2e-55	185.0	0.0	3.2e-54	183.2	0.0	1.9	2	0	0	2	2	2	1	Helicase
GNAT_acetyltr_2	PF13718.1	gi|124027826|ref|YP_001013146.1|	-	5.5e-50	169.4	0.0	8.1e-49	165.6	0.0	2.6	2	1	0	2	2	2	1	GNAT	acetyltransferase	2
DUF1726	PF08351.6	gi|124027826|ref|YP_001013146.1|	-	5.4e-30	102.9	0.0	1.6e-29	101.4	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
tRNA_bind_2	PF13725.1	gi|124027826|ref|YP_001013146.1|	-	2.8e-09	37.0	0.0	1.8e-07	31.2	0.0	2.7	2	0	0	2	2	2	1	Possible	tRNA	binding	domain
Acetyltransf_1	PF00583.19	gi|124027826|ref|YP_001013146.1|	-	1e-08	35.0	0.1	3.6e-08	33.3	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|124027826|ref|YP_001013146.1|	-	2.6e-07	30.6	0.0	7e-07	29.3	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
tRNA-synt_His	PF13393.1	gi|124027827|ref|YP_001013147.1|	-	1.7e-70	237.5	0.1	2.6e-70	236.9	0.1	1.3	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|124027827|ref|YP_001013147.1|	-	4.8e-22	78.3	0.1	1.1e-21	77.1	0.0	1.6	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|124027827|ref|YP_001013147.1|	-	6.2e-11	42.0	0.3	1.4e-10	40.9	0.2	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2	PF00152.15	gi|124027827|ref|YP_001013147.1|	-	5.7e-05	22.0	0.3	0.079	11.7	0.1	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2d	PF01409.15	gi|124027827|ref|YP_001013147.1|	-	0.0011	18.2	0.0	0.018	14.2	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA_int_endo	PF01974.12	gi|124027828|ref|YP_001013148.1|	-	1.6e-07	30.9	0.0	2.5e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|124027828|ref|YP_001013148.1|	-	0.0028	17.1	0.3	0.0078	15.7	0.1	1.8	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	N-terminal	domain
IF-2B	PF01008.12	gi|124027829|ref|YP_001013149.1|	-	5.2e-71	238.9	0.2	6.5e-71	238.6	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
TFCD_C	PF12612.3	gi|124027830|ref|YP_001013150.1|	-	0.015	14.7	0.3	0.031	13.6	0.2	1.5	1	0	0	1	1	1	0	Tubulin	folding	cofactor	D	C	terminal
CBF	PF03914.12	gi|124027830|ref|YP_001013150.1|	-	0.044	13.2	1.1	7.9	5.8	0.1	2.5	2	0	0	2	2	2	0	CBF/Mak21	family
SPX	PF03105.14	gi|124027830|ref|YP_001013150.1|	-	0.21	11.3	0.1	0.31	10.8	0.0	1.1	1	0	0	1	1	1	0	SPX	domain
T2SE	PF00437.15	gi|124027831|ref|YP_001013151.1|	-	7.6e-44	149.6	0.0	1.1e-43	149.1	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_21	PF13304.1	gi|124027831|ref|YP_001013151.1|	-	8.4e-05	22.6	0.0	0.00018	21.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124027831|ref|YP_001013151.1|	-	0.0007	19.0	0.0	0.0015	18.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|124027831|ref|YP_001013151.1|	-	0.0012	19.1	0.0	0.0025	18.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124027831|ref|YP_001013151.1|	-	0.0034	18.1	0.5	0.02	15.7	0.1	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124027831|ref|YP_001013151.1|	-	0.0045	16.9	0.1	0.015	15.2	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
MobB	PF03205.9	gi|124027831|ref|YP_001013151.1|	-	0.0046	16.6	0.0	0.0093	15.6	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|124027831|ref|YP_001013151.1|	-	0.0084	16.4	0.0	0.024	14.9	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124027831|ref|YP_001013151.1|	-	0.036	13.9	0.0	0.062	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|124027831|ref|YP_001013151.1|	-	0.039	14.1	0.0	0.13	12.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.4	gi|124027831|ref|YP_001013151.1|	-	0.039	13.4	0.0	0.071	12.6	0.0	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.5	gi|124027831|ref|YP_001013151.1|	-	0.049	12.8	0.0	0.097	11.8	0.0	1.5	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
FtsK_SpoIIIE	PF01580.13	gi|124027831|ref|YP_001013151.1|	-	0.058	12.8	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_14	PF13173.1	gi|124027831|ref|YP_001013151.1|	-	0.085	12.7	0.0	0.2	11.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|124027831|ref|YP_001013151.1|	-	0.12	12.3	0.0	0.79	9.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|124027831|ref|YP_001013151.1|	-	0.12	12.6	0.0	0.22	11.8	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
Mg_chelatase	PF01078.16	gi|124027831|ref|YP_001013151.1|	-	0.17	11.0	0.0	0.28	10.3	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Tmemb_9	PF05434.6	gi|124027832|ref|YP_001013152.1|	-	0.13	12.0	0.1	0.17	11.5	0.1	1.2	1	0	0	1	1	1	0	TMEM9
Sipho_tail	PF05709.6	gi|124027832|ref|YP_001013152.1|	-	0.17	11.0	0.5	0.21	10.7	0.3	1.2	1	0	0	1	1	1	0	Phage	tail	protein
Arch_flagellin	PF01917.11	gi|124027832|ref|YP_001013152.1|	-	2	7.9	5.8	0.26	10.8	0.2	1.9	1	1	1	2	2	2	0	Archaebacterial	flagellin
Topo-VIb_trans	PF09239.6	gi|124027833|ref|YP_001013153.1|	-	8.1e-63	210.7	0.0	1.3e-62	210.0	0.0	1.4	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c_3	PF13589.1	gi|124027833|ref|YP_001013153.1|	-	1.4e-12	47.4	0.0	2.5e-12	46.6	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|124027833|ref|YP_001013153.1|	-	7.1e-12	45.0	0.0	1.7e-11	43.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.6	gi|124027833|ref|YP_001013153.1|	-	4e-05	22.3	0.3	0.00015	20.4	0.0	2.0	2	1	1	3	3	3	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
IMS_C	PF11799.3	gi|124027833|ref|YP_001013153.1|	-	0.074	12.9	0.0	0.61	10.0	0.0	2.4	2	0	0	2	2	2	0	impB/mucB/samB	family	C-terminal	domain
HHH	PF00633.18	gi|124027833|ref|YP_001013153.1|	-	0.092	12.4	0.0	0.27	10.9	0.0	1.9	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|124027833|ref|YP_001013153.1|	-	0.18	12.0	0.7	17	5.6	0.0	3.1	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
TP6A_N	PF04406.9	gi|124027834|ref|YP_001013154.1|	-	1.1e-24	85.8	0.1	2.2e-24	84.9	0.0	1.5	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
DUF2399	PF09664.5	gi|124027834|ref|YP_001013154.1|	-	0.01	15.6	0.0	0.019	14.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2399)
RelB_N	PF12910.2	gi|124027834|ref|YP_001013154.1|	-	0.033	13.5	0.0	0.091	12.1	0.0	1.7	1	0	0	1	1	1	0	Antitoxin	of	toxin-antitoxin	stability	system	N-terminal
DeoC	PF01791.4	gi|124027835|ref|YP_001013155.1|	-	1.5e-31	109.5	0.0	1.7e-31	109.3	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
Glu_synthase	PF01645.12	gi|124027835|ref|YP_001013155.1|	-	0.0025	16.7	0.0	0.0052	15.7	0.0	1.4	1	0	0	1	1	1	1	Conserved	region	in	glutamate	synthase
NMO	PF03060.10	gi|124027835|ref|YP_001013155.1|	-	0.085	11.9	0.3	0.2	10.7	0.1	1.6	2	0	0	2	2	2	0	Nitronate	monooxygenase
PcrB	PF01884.12	gi|124027835|ref|YP_001013155.1|	-	0.1	11.8	0.5	0.14	11.3	0.4	1.5	1	1	0	1	1	1	0	PcrB	family
CHASE3	PF05227.8	gi|124027835|ref|YP_001013155.1|	-	0.16	11.6	0.2	0.29	10.7	0.0	1.5	2	0	0	2	2	2	0	CHASE3	domain
ASCH	PF04266.9	gi|124027836|ref|YP_001013156.1|	-	9.3e-20	70.9	0.1	1.4e-19	70.3	0.1	1.3	1	0	0	1	1	1	1	ASCH	domain
HEAT_EZ	PF13513.1	gi|124027836|ref|YP_001013156.1|	-	0.082	13.4	0.1	0.31	11.5	0.0	2.1	2	0	0	2	2	2	0	HEAT-like	repeat
NTP_transf_3	PF12804.2	gi|124027837|ref|YP_001013157.1|	-	2.9e-09	37.2	0.0	9.3e-09	35.5	0.0	1.7	1	1	1	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|124027837|ref|YP_001013157.1|	-	6.5e-08	31.7	5.1	5.5e-05	22.4	0.4	4.6	3	1	2	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
SIS	PF01380.17	gi|124027838|ref|YP_001013158.1|	-	3.1e-44	149.7	1.7	5.2e-28	97.2	1.2	2.3	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|124027838|ref|YP_001013158.1|	-	3.3e-24	85.3	0.0	6.4e-24	84.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|124027838|ref|YP_001013158.1|	-	3e-21	75.5	1.0	2.4e-17	62.6	0.1	2.3	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|124027838|ref|YP_001013158.1|	-	1.4e-19	70.0	0.0	2.6e-19	69.1	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|124027838|ref|YP_001013158.1|	-	5.7e-06	25.2	0.0	8.5e-06	24.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.1	gi|124027838|ref|YP_001013158.1|	-	8.9e-05	22.2	1.7	0.0044	16.7	1.2	2.8	1	1	0	1	1	1	1	SIS	domain
VWA_2	PF13519.1	gi|124027838|ref|YP_001013158.1|	-	0.11	12.6	0.1	0.86	9.6	0.1	2.2	2	1	0	2	2	2	0	von	Willebrand	factor	type	A	domain
tRNA-Thr_ED	PF08915.6	gi|124027839|ref|YP_001013159.1|	-	1.6e-54	183.6	0.7	2.2e-54	183.1	0.1	1.6	2	0	0	2	2	2	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.15	gi|124027839|ref|YP_001013159.1|	-	6.7e-20	70.8	1.3	9.9e-20	70.2	0.2	1.9	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.20	gi|124027839|ref|YP_001013159.1|	-	5.5e-15	55.3	0.3	1.2e-14	54.3	0.2	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Sulfakinin	PF08257.6	gi|124027839|ref|YP_001013159.1|	-	0.061	13.1	0.9	0.18	11.6	0.6	1.9	1	0	0	1	1	1	0	Sulfakinin	family
Rad51	PF08423.6	gi|124027840|ref|YP_001013160.1|	-	2.7e-95	318.1	0.0	3.2e-95	317.8	0.0	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.1	gi|124027840|ref|YP_001013160.1|	-	2.5e-15	56.4	0.0	4.1e-15	55.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
HHH_5	PF14520.1	gi|124027840|ref|YP_001013160.1|	-	1e-13	51.1	1.0	3e-13	49.7	0.7	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
RecA	PF00154.16	gi|124027840|ref|YP_001013160.1|	-	6.9e-13	48.3	0.0	1.1e-12	47.7	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
KaiC	PF06745.8	gi|124027840|ref|YP_001013160.1|	-	2.2e-10	40.0	0.1	4.1e-10	39.1	0.0	1.5	1	1	0	1	1	1	1	KaiC
HHH	PF00633.18	gi|124027840|ref|YP_001013160.1|	-	1.9e-05	24.0	0.4	0.00058	19.4	0.0	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
DNA_pol_lambd_f	PF10391.4	gi|124027840|ref|YP_001013160.1|	-	3.3e-05	23.3	0.0	0.0003	20.2	0.0	2.5	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.3	gi|124027840|ref|YP_001013160.1|	-	0.00016	21.5	0.0	0.00034	20.4	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
HHH_2	PF12826.2	gi|124027840|ref|YP_001013160.1|	-	0.00017	21.3	0.4	0.00057	19.7	0.1	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
IMS_HHH	PF11798.3	gi|124027840|ref|YP_001013160.1|	-	0.0058	16.6	0.0	0.016	15.2	0.0	1.8	1	0	0	1	1	1	1	IMS	family	HHH	motif
AAA_18	PF13238.1	gi|124027840|ref|YP_001013160.1|	-	0.0083	16.4	0.1	0.033	14.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|124027840|ref|YP_001013160.1|	-	0.018	14.6	0.0	0.034	13.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
DUF4332	PF14229.1	gi|124027840|ref|YP_001013160.1|	-	0.018	14.9	0.3	0.1	12.5	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4332)
AAA_22	PF13401.1	gi|124027840|ref|YP_001013160.1|	-	0.038	14.1	0.0	0.11	12.5	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
5_3_exonuc	PF01367.15	gi|124027840|ref|YP_001013160.1|	-	0.04	14.1	0.1	0.19	11.9	0.0	2.0	2	0	0	2	2	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_3	PF12836.2	gi|124027840|ref|YP_001013160.1|	-	0.047	13.6	0.1	4.4	7.3	0.1	2.6	1	1	1	2	2	2	0	Helix-hairpin-helix	motif
DUF1009	PF06230.6	gi|124027840|ref|YP_001013160.1|	-	0.056	12.7	0.2	0.13	11.6	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1009)
Peptidase_A24	PF01478.13	gi|124027842|ref|YP_001013162.1|	-	9.4e-08	32.1	8.4	9.4e-08	32.1	5.8	1.6	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
Arc_PepC_II	PF06847.6	gi|124027842|ref|YP_001013162.1|	-	2e-06	28.1	0.0	4.8e-06	26.9	0.0	1.6	1	1	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
FA_desaturase	PF00487.19	gi|124027842|ref|YP_001013162.1|	-	8.3	5.7	6.7	13	5.0	3.9	2.0	1	1	1	2	2	2	0	Fatty	acid	desaturase
HIT	PF01230.18	gi|124027843|ref|YP_001013163.1|	-	5.8e-15	55.6	0.0	1e-14	54.8	0.0	1.4	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|124027843|ref|YP_001013163.1|	-	3.2e-09	37.0	0.0	5.1e-09	36.3	0.0	1.3	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|124027843|ref|YP_001013163.1|	-	1.3e-06	28.0	0.3	2.4e-06	27.2	0.2	1.4	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
Hpt	PF01627.18	gi|124027844|ref|YP_001013164.1|	-	0.027	14.4	2.6	0.78	9.7	0.7	2.9	2	1	1	3	3	3	0	Hpt	domain
DnaB_bind	PF10410.4	gi|124027844|ref|YP_001013164.1|	-	0.86	9.6	5.5	0.29	11.1	0.7	2.5	2	1	0	2	2	2	0	DnaB-helicase	binding	domain	of	primase
MerR-DNA-bind	PF09278.6	gi|124027844|ref|YP_001013164.1|	-	2.6	8.5	8.0	1.9	8.9	0.5	2.6	1	1	1	2	2	2	0	MerR,	DNA	binding
HARE-HTH	PF05066.8	gi|124027845|ref|YP_001013165.1|	-	0.00014	22.1	0.0	0.00026	21.2	0.0	1.4	1	1	1	2	2	2	1	HB1,	ASXL,	restriction	endonuclease	HTH	domain
Mrr_N	PF14338.1	gi|124027845|ref|YP_001013165.1|	-	0.074	13.1	0.0	0.082	13.0	0.0	1.2	1	0	0	1	1	1	0	Mrr	N-terminal	domain
HTH_IclR	PF09339.5	gi|124027845|ref|YP_001013165.1|	-	0.096	12.2	0.0	5.1	6.7	0.0	2.2	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF1219	PF06755.7	gi|124027846|ref|YP_001013166.1|	-	0.033	13.7	0.0	0.037	13.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1219)
zf-FCS	PF06467.9	gi|124027847|ref|YP_001013167.1|	-	0.022	14.3	0.1	0.04	13.5	0.1	1.4	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-C2H2	PF00096.21	gi|124027847|ref|YP_001013167.1|	-	0.17	12.3	0.8	0.66	10.4	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DEAD	PF00270.24	gi|124027848|ref|YP_001013168.1|	-	7.9e-33	113.3	0.0	2.2e-32	111.8	0.0	1.8	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
DEAD_assoc	PF08494.6	gi|124027848|ref|YP_001013168.1|	-	2.8e-16	59.7	0.3	7.4e-15	55.1	0.2	2.6	1	1	0	1	1	1	1	DEAD/H	associated
Helicase_C	PF00271.26	gi|124027848|ref|YP_001013168.1|	-	1.4e-13	50.4	0.1	2.6e-12	46.3	0.1	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|124027848|ref|YP_001013168.1|	-	1.8e-05	24.6	0.0	5.9e-05	22.9	0.0	1.9	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|124027848|ref|YP_001013168.1|	-	0.029	13.1	0.0	0.05	12.4	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
UvrD-helicase	PF00580.16	gi|124027848|ref|YP_001013168.1|	-	0.34	10.1	0.0	0.56	9.4	0.0	1.3	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
PQQ	PF01011.16	gi|124027848|ref|YP_001013168.1|	-	0.79	9.3	2.3	3.7	7.2	0.0	2.6	2	0	0	2	2	2	0	PQQ	enzyme	repeat
Alba	PF01918.16	gi|124027850|ref|YP_001013170.1|	-	1.4e-11	43.8	0.2	1.9e-11	43.3	0.1	1.2	1	0	0	1	1	1	1	Alba
DUF4010	PF13194.1	gi|124027851|ref|YP_001013171.1|	-	9.8e-27	93.6	21.8	9.8e-27	93.6	15.1	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.11	gi|124027851|ref|YP_001013171.1|	-	3.9e-05	23.4	16.5	3.9e-05	23.4	11.5	3.3	3	1	0	3	3	3	1	MgtC	family
Unstab_antitox	PF09720.5	gi|124027852|ref|YP_001013172.1|	-	0.061	13.0	0.1	7.4	6.3	0.0	2.3	2	0	0	2	2	2	0	Putative	addiction	module	component
Metallophos_2	PF12850.2	gi|124027853|ref|YP_001013173.1|	-	6e-05	22.9	0.0	0.00011	22.0	0.0	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Cob_adeno_trans	PF01923.13	gi|124027854|ref|YP_001013174.1|	-	9.1e-36	123.1	0.0	1e-35	122.9	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
TPP_enzyme_C	PF02775.16	gi|124027855|ref|YP_001013175.1|	-	5e-32	110.6	0.3	9.5e-32	109.6	0.2	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|124027855|ref|YP_001013175.1|	-	1.9e-13	50.1	0.1	1.9e-12	46.9	0.1	2.3	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Lipase_GDSL_2	PF13472.1	gi|124027855|ref|YP_001013175.1|	-	0.012	15.7	0.0	0.024	14.7	0.0	1.5	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
ACT_7	PF13840.1	gi|124027855|ref|YP_001013175.1|	-	0.13	11.8	0.1	1.9	8.0	0.0	2.2	2	0	0	2	2	2	0	ACT	domain
Acetyltransf_1	PF00583.19	gi|124027856|ref|YP_001013176.1|	-	6.8e-25	86.9	0.3	1.2e-24	86.1	0.2	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|124027856|ref|YP_001013176.1|	-	4.4e-14	52.5	0.0	6.5e-14	52.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|124027856|ref|YP_001013176.1|	-	9.3e-14	51.3	0.2	1.5e-13	50.6	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|124027856|ref|YP_001013176.1|	-	5.1e-12	45.9	0.3	1.4e-11	44.5	0.2	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|124027856|ref|YP_001013176.1|	-	1.5e-11	43.8	0.2	5.1e-11	42.1	0.0	1.8	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_4	PF13420.1	gi|124027856|ref|YP_001013176.1|	-	3.1e-11	43.4	0.0	4.9e-11	42.8	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|124027856|ref|YP_001013176.1|	-	1.6e-09	37.6	0.1	2.8e-09	36.8	0.1	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|124027856|ref|YP_001013176.1|	-	2.5e-08	34.2	0.1	4.1e-08	33.4	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|124027856|ref|YP_001013176.1|	-	0.0085	15.9	0.1	0.017	14.9	0.0	1.6	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.1	gi|124027856|ref|YP_001013176.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.3	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
PK	PF00224.16	gi|124027857|ref|YP_001013177.1|	-	2.3e-91	306.0	0.1	4.4e-91	305.1	0.0	1.4	2	0	0	2	2	2	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.11	gi|124027857|ref|YP_001013177.1|	-	6.7e-13	48.2	0.1	4.9e-12	45.4	0.0	2.3	2	1	0	2	2	2	1	Pyruvate	kinase,	alpha/beta	domain
HpcH_HpaI	PF03328.9	gi|124027857|ref|YP_001013177.1|	-	3.6e-05	22.7	0.3	6.2e-05	21.9	0.2	1.4	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
HTH_38	PF13936.1	gi|124027858|ref|YP_001013178.1|	-	1.4e-15	56.5	0.1	2.7e-09	36.4	0.2	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
TrmB	PF01978.14	gi|124027858|ref|YP_001013178.1|	-	3.3e-15	55.5	1.1	3.4e-07	29.8	0.2	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|124027858|ref|YP_001013178.1|	-	2.3e-12	46.5	0.0	2.5e-06	27.1	0.0	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|124027858|ref|YP_001013178.1|	-	4.5e-12	45.2	0.1	1.3e-05	24.7	0.0	2.2	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_28	PF13518.1	gi|124027858|ref|YP_001013178.1|	-	3.6e-11	42.8	0.8	0.00013	21.8	0.1	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain
Terminase_5	PF06056.7	gi|124027858|ref|YP_001013178.1|	-	2.3e-10	39.8	0.1	1.3e-05	24.6	0.1	2.2	2	0	0	2	2	2	2	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_7	PF02796.10	gi|124027858|ref|YP_001013178.1|	-	3.9e-10	39.4	0.1	6.3e-06	25.9	0.0	2.2	2	0	0	2	2	2	2	Helix-turn-helix	domain	of	resolvase
HTH_29	PF13551.1	gi|124027858|ref|YP_001013178.1|	-	4.7e-10	39.5	0.4	1.9e-07	31.1	0.2	2.0	1	1	1	2	2	2	2	Winged	helix-turn	helix
HTH_11	PF08279.7	gi|124027858|ref|YP_001013178.1|	-	2.3e-09	36.7	0.0	8.3e-06	25.3	0.0	2.3	1	1	1	2	2	2	2	HTH	domain
Sigma70_r4_2	PF08281.7	gi|124027858|ref|YP_001013178.1|	-	5.2e-09	35.4	0.7	0.00036	19.9	0.2	2.2	2	0	0	2	2	2	2	Sigma-70,	region	4
HTH_24	PF13412.1	gi|124027858|ref|YP_001013178.1|	-	6.5e-09	35.0	0.6	1.3e-05	24.4	0.0	2.4	3	0	0	3	3	2	2	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|124027858|ref|YP_001013178.1|	-	1.2e-08	34.4	0.0	0.00011	21.7	0.0	2.1	1	1	1	2	2	2	2	MarR	family
HTH_IclR	PF09339.5	gi|124027858|ref|YP_001013178.1|	-	4.5e-07	29.3	0.0	0.0079	15.7	0.0	2.2	2	0	0	2	2	2	2	IclR	helix-turn-helix	domain
GerE	PF00196.14	gi|124027858|ref|YP_001013178.1|	-	1.6e-06	27.2	0.0	0.023	13.9	0.0	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	luxR	family
MarR	PF01047.17	gi|124027858|ref|YP_001013178.1|	-	2.2e-06	27.2	0.0	0.0021	17.7	0.0	2.4	2	1	0	2	2	2	1	MarR	family
HTH_40	PF14493.1	gi|124027858|ref|YP_001013178.1|	-	6.7e-06	26.2	0.0	0.033	14.3	0.0	2.2	1	1	1	2	2	2	2	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|124027858|ref|YP_001013178.1|	-	1.5e-05	24.1	2.3	0.0024	17.1	0.2	2.8	3	1	0	3	3	2	1	Sigma-70,	region	4
GntR	PF00392.16	gi|124027858|ref|YP_001013178.1|	-	2.7e-05	23.5	0.2	0.0019	17.5	0.0	2.8	2	1	1	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|124027858|ref|YP_001013178.1|	-	6.1e-05	22.8	0.0	0.0021	17.9	0.0	2.4	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.1	gi|124027858|ref|YP_001013178.1|	-	0.0001	22.3	0.1	0.023	14.8	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
CENP-B_N	PF04218.8	gi|124027858|ref|YP_001013178.1|	-	0.0001	21.6	0.0	0.32	10.4	0.0	2.3	2	0	0	2	2	2	2	CENP-B	N-terminal	DNA-binding	domain
HTH_Tnp_IS630	PF01710.11	gi|124027858|ref|YP_001013178.1|	-	0.00018	21.1	0.2	0.00028	20.5	0.1	1.3	1	1	0	1	1	1	1	Transposase
RPA_C	PF08784.6	gi|124027858|ref|YP_001013178.1|	-	0.00028	21.2	0.0	0.058	13.8	0.0	2.1	2	0	0	2	2	2	1	Replication	protein	A	C	terminal
HTH_17	PF12728.2	gi|124027858|ref|YP_001013178.1|	-	0.00031	20.9	1.4	0.15	12.3	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|124027858|ref|YP_001013178.1|	-	0.00033	20.7	0.1	0.0023	18.0	0.0	1.9	1	1	1	2	2	2	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|124027858|ref|YP_001013178.1|	-	0.0004	19.9	0.0	0.17	11.5	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
IF2_N	PF04760.10	gi|124027858|ref|YP_001013178.1|	-	0.00048	19.7	0.4	0.07	12.7	0.0	2.8	3	1	1	4	4	3	1	Translation	initiation	factor	IF-2,	N-terminal	region
DUF4423	PF14394.1	gi|124027858|ref|YP_001013178.1|	-	0.00073	19.1	0.0	0.0011	18.5	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
Sigma70_ECF	PF07638.6	gi|124027858|ref|YP_001013178.1|	-	0.00081	19.1	0.0	0.41	10.2	0.0	2.1	1	1	1	2	2	2	1	ECF	sigma	factor
HTH_Crp_2	PF13545.1	gi|124027858|ref|YP_001013178.1|	-	0.00086	19.0	0.0	0.0071	16.1	0.0	2.0	1	1	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|124027858|ref|YP_001013178.1|	-	0.00086	18.7	0.0	0.21	11.1	0.0	2.4	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
FeoC	PF09012.5	gi|124027858|ref|YP_001013178.1|	-	0.0012	18.5	0.0	0.0062	16.2	0.0	2.0	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
HTH_Tnp_1	PF01527.15	gi|124027858|ref|YP_001013178.1|	-	0.0013	18.6	0.0	0.61	10.0	0.0	2.2	1	1	1	2	2	2	1	Transposase
HTH_22	PF13309.1	gi|124027858|ref|YP_001013178.1|	-	0.0014	18.2	0.7	1.5	8.6	0.0	3.3	2	2	0	2	2	2	1	HTH	domain
GcrA	PF07750.6	gi|124027858|ref|YP_001013178.1|	-	0.0019	18.4	0.0	0.29	11.3	0.0	2.0	1	1	1	2	2	2	1	GcrA	cell	cycle	regulator
SpoIIID	PF12116.3	gi|124027858|ref|YP_001013178.1|	-	0.0019	18.0	0.0	0.27	11.1	0.0	2.1	2	0	0	2	2	2	1	Stage	III	sporulation	protein	D
PadR	PF03551.9	gi|124027858|ref|YP_001013178.1|	-	0.0024	17.6	1.9	0.018	14.7	0.1	2.4	1	1	1	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_DeoR	PF08220.7	gi|124027858|ref|YP_001013178.1|	-	0.0025	17.3	0.1	0.0057	16.1	0.0	1.6	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_41	PF14502.1	gi|124027858|ref|YP_001013178.1|	-	0.0036	16.8	0.0	0.012	15.1	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_10	PF04967.7	gi|124027858|ref|YP_001013178.1|	-	0.0036	16.8	0.1	3.6	7.2	0.0	2.7	3	0	0	3	3	3	0	HTH	DNA	binding	domain
TetR_N	PF00440.18	gi|124027858|ref|YP_001013178.1|	-	0.0044	16.6	0.0	1.6	8.4	0.1	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
FUR	PF01475.14	gi|124027858|ref|YP_001013178.1|	-	0.005	16.7	0.2	0.016	15.0	0.0	1.8	1	1	0	2	2	1	1	Ferric	uptake	regulator	family
DUF2250	PF10007.4	gi|124027858|ref|YP_001013178.1|	-	0.0063	16.3	0.3	0.012	15.4	0.1	1.6	2	0	0	2	2	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
RNA_pol_Rpc34	PF05158.7	gi|124027858|ref|YP_001013178.1|	-	0.0087	15.2	0.1	0.014	14.5	0.1	1.3	2	0	0	2	2	1	1	RNA	polymerase	Rpc34	subunit
HTH_35	PF13693.1	gi|124027858|ref|YP_001013178.1|	-	0.014	15.2	0.0	1.5	8.6	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.1	gi|124027858|ref|YP_001013178.1|	-	0.021	14.8	0.0	0.067	13.2	0.0	1.7	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_6	PF01418.12	gi|124027858|ref|YP_001013178.1|	-	0.022	14.4	0.0	2.4	7.9	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain,	rpiR	family
LexA_DNA_bind	PF01726.11	gi|124027858|ref|YP_001013178.1|	-	0.024	14.1	0.0	0.16	11.5	0.0	2.0	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_27	PF13463.1	gi|124027858|ref|YP_001013178.1|	-	0.027	14.7	0.1	2.8	8.3	0.0	2.2	1	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
KorB	PF08535.5	gi|124027858|ref|YP_001013178.1|	-	0.029	14.5	0.0	0.51	10.5	0.0	2.2	2	1	0	2	2	2	0	KorB	domain
UPF0122	PF04297.9	gi|124027858|ref|YP_001013178.1|	-	0.032	14.2	0.0	0.89	9.6	0.0	2.0	2	0	0	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Penicillinase_R	PF03965.11	gi|124027858|ref|YP_001013178.1|	-	0.04	14.0	0.2	0.58	10.2	0.1	2.0	1	1	1	2	2	2	0	Penicillinase	repressor
HTH_CodY	PF08222.6	gi|124027858|ref|YP_001013178.1|	-	0.041	13.2	0.0	2.1	7.7	0.0	2.2	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_8	PF02954.14	gi|124027858|ref|YP_001013178.1|	-	0.05	13.1	0.2	0.35	10.4	0.1	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
HTH_Tnp_ISL3	PF13542.1	gi|124027858|ref|YP_001013178.1|	-	0.058	12.5	0.0	3.7	6.8	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Phage_antitermQ	PF06530.7	gi|124027858|ref|YP_001013178.1|	-	0.073	12.6	0.1	2.2	7.8	0.0	2.0	1	1	0	2	2	2	0	Phage	antitermination	protein	Q
HTH_45	PF14947.1	gi|124027858|ref|YP_001013178.1|	-	0.087	12.6	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
B-block_TFIIIC	PF04182.7	gi|124027858|ref|YP_001013178.1|	-	0.12	12.2	0.0	5.2	6.9	0.0	2.1	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
HrcA_DNA-bdg	PF03444.10	gi|124027858|ref|YP_001013178.1|	-	0.12	11.8	0.0	1.9	7.9	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
AsnC_trans_reg	PF01037.16	gi|124027859|ref|YP_001013179.1|	-	3.7e-08	32.9	0.5	4.9e-08	32.5	0.4	1.3	1	1	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|124027859|ref|YP_001013179.1|	-	0.0017	18.0	0.2	0.0019	17.8	0.1	1.1	1	0	0	1	1	1	1	GYD	domain
Spt5-NGN	PF03439.8	gi|124027859|ref|YP_001013179.1|	-	0.12	12.1	2.6	0.15	11.8	1.8	1.1	1	0	0	1	1	1	0	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
DUF432	PF04254.8	gi|124027860|ref|YP_001013180.1|	-	7e-37	126.0	0.1	1.1e-36	125.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
RHH_1	PF01402.16	gi|124027862|ref|YP_001013182.1|	-	1.6e-06	27.7	2.0	0.0001	22.0	0.1	3.1	2	1	1	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
RHH_4	PF13467.1	gi|124027862|ref|YP_001013182.1|	-	0.12	12.3	0.1	0.43	10.4	0.0	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
RHH_1	PF01402.16	gi|124027863|ref|YP_001013183.1|	-	0.013	15.3	0.0	0.037	13.9	0.0	1.7	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
RHH_4	PF13467.1	gi|124027863|ref|YP_001013183.1|	-	0.02	14.7	0.1	0.12	12.2	0.1	2.2	1	1	0	1	1	1	0	Ribbon-helix-helix	domain
DUF3408	PF11888.3	gi|124027863|ref|YP_001013183.1|	-	0.085	12.7	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3408)
CarboxypepD_reg	PF13620.1	gi|124027865|ref|YP_001013185.1|	-	1.3e-12	47.6	7.8	3e-12	46.4	5.4	1.7	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|124027865|ref|YP_001013185.1|	-	8.9e-12	44.9	2.5	2.2e-11	43.6	1.1	2.2	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4480)
Baculo_PEP_C	PF04513.7	gi|124027865|ref|YP_001013185.1|	-	2.1e-09	37.3	35.9	0.00071	19.4	5.9	3.1	1	1	2	3	3	3	3	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1664	PF07889.7	gi|124027865|ref|YP_001013185.1|	-	1.6e-08	34.4	20.3	0.00016	21.4	4.0	3.4	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF1664)
Reo_sigmaC	PF04582.7	gi|124027865|ref|YP_001013185.1|	-	4.8e-08	32.5	27.2	5.9e-07	28.9	13.1	2.9	1	1	2	3	3	3	2	Reovirus	sigma	C	capsid	protein
TBPIP	PF07106.8	gi|124027865|ref|YP_001013185.1|	-	9.9e-08	31.7	27.6	0.0032	17.0	7.5	3.1	1	1	2	3	3	3	3	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Filament	PF00038.16	gi|124027865|ref|YP_001013185.1|	-	1.5e-07	31.2	22.7	1.2e-06	28.1	7.2	2.6	1	1	1	2	2	2	1	Intermediate	filament	protein
AAA_13	PF13166.1	gi|124027865|ref|YP_001013185.1|	-	1.7e-07	30.1	21.8	2.2e-07	29.7	15.1	1.1	1	0	0	1	1	1	1	AAA	domain
Prominin	PF05478.6	gi|124027865|ref|YP_001013185.1|	-	4.1e-07	27.9	17.9	5.8e-07	27.4	12.4	1.1	1	0	0	1	1	1	1	Prominin
A2M_N	PF01835.14	gi|124027865|ref|YP_001013185.1|	-	1e-06	28.8	0.0	6.6e-06	26.2	0.0	2.3	2	0	0	2	2	1	1	MG2	domain
DUF948	PF06103.6	gi|124027865|ref|YP_001013185.1|	-	1.4e-06	28.0	2.0	1.4e-06	28.0	1.4	4.8	3	1	2	5	5	3	2	Bacterial	protein	of	unknown	function	(DUF948)
Prefoldin	PF02996.12	gi|124027865|ref|YP_001013185.1|	-	3e-06	26.8	29.6	0.054	13.1	2.0	5.6	1	1	5	6	6	6	3	Prefoldin	subunit
Rootletin	PF15035.1	gi|124027865|ref|YP_001013185.1|	-	3.8e-06	27.0	20.5	0.00028	20.9	0.8	2.1	1	1	1	2	2	2	2	Ciliary	rootlet	component,	centrosome	cohesion
Myosin_tail_1	PF01576.14	gi|124027865|ref|YP_001013185.1|	-	4.7e-06	24.6	19.4	8.9e-06	23.7	13.5	1.4	1	0	0	1	1	1	1	Myosin	tail
DUF869	PF05911.6	gi|124027865|ref|YP_001013185.1|	-	5.2e-06	25.0	17.3	7e-06	24.5	12.0	1.0	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
MAD	PF05557.8	gi|124027865|ref|YP_001013185.1|	-	5.6e-06	24.7	17.8	1e-05	23.8	12.3	1.3	1	1	0	1	1	1	1	Mitotic	checkpoint	protein
Apolipoprotein	PF01442.13	gi|124027865|ref|YP_001013185.1|	-	5.7e-06	25.9	21.1	0.0041	16.6	5.3	2.5	1	1	1	2	2	2	2	Apolipoprotein	A1/A4/E	domain
NPV_P10	PF05531.7	gi|124027865|ref|YP_001013185.1|	-	6.9e-06	26.2	27.3	0.061	13.5	2.7	4.4	1	1	2	3	3	3	2	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.6	gi|124027865|ref|YP_001013185.1|	-	9.4e-06	24.5	29.0	0.002	16.8	3.1	2.1	1	1	1	2	2	2	2	Spc7	kinetochore	protein
EzrA	PF06160.7	gi|124027865|ref|YP_001013185.1|	-	1e-05	23.9	8.0	1e-05	23.9	5.5	2.6	2	1	1	3	3	2	1	Septation	ring	formation	regulator,	EzrA
Seryl_tRNA_N	PF02403.17	gi|124027865|ref|YP_001013185.1|	-	2.2e-05	24.4	26.1	0.038	13.9	7.5	3.6	1	1	3	4	4	4	2	Seryl-tRNA	synthetase	N-terminal	domain
IFT57	PF10498.4	gi|124027865|ref|YP_001013185.1|	-	2.5e-05	23.2	23.5	0.00022	20.0	4.9	2.2	1	1	0	2	2	2	1	Intra-flagellar	transport	protein	57
ATG16	PF08614.6	gi|124027865|ref|YP_001013185.1|	-	3.2e-05	23.8	29.1	0.0085	15.9	10.4	2.4	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
MscS_porin	PF12795.2	gi|124027865|ref|YP_001013185.1|	-	3.6e-05	23.2	42.2	0.0023	17.3	10.2	2.1	1	1	1	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
Fib_alpha	PF08702.5	gi|124027865|ref|YP_001013185.1|	-	4.4e-05	23.6	27.3	0.014	15.5	10.3	2.2	1	1	1	2	2	2	2	Fibrinogen	alpha/beta	chain	family
Prefoldin_2	PF01920.15	gi|124027865|ref|YP_001013185.1|	-	4.5e-05	23.1	28.2	0.38	10.5	0.1	5.3	1	1	3	4	4	4	2	Prefoldin	subunit
Big_1	PF02369.11	gi|124027865|ref|YP_001013185.1|	-	4.8e-05	23.2	4.9	0.00023	21.0	3.4	2.2	1	0	0	1	1	1	1	Bacterial	Ig-like	domain	(group	1)
DUF3584	PF12128.3	gi|124027865|ref|YP_001013185.1|	-	5.1e-05	20.8	23.5	0.0043	14.4	9.9	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3584)
SlyX	PF04102.7	gi|124027865|ref|YP_001013185.1|	-	5.6e-05	23.4	3.1	5.6e-05	23.4	2.2	4.9	2	1	2	4	4	4	1	SlyX
IncA	PF04156.9	gi|124027865|ref|YP_001013185.1|	-	5.9e-05	22.7	44.4	0.0002	20.9	18.4	4.2	2	1	2	4	4	2	2	IncA	protein
Med9	PF07544.8	gi|124027865|ref|YP_001013185.1|	-	6.6e-05	22.5	18.4	0.099	12.3	4.2	4.2	1	1	3	4	4	4	2	RNA	polymerase	II	transcription	mediator	complex	subunit	9
ADIP	PF11559.3	gi|124027865|ref|YP_001013185.1|	-	6.9e-05	22.7	26.1	0.0015	18.4	4.8	2.7	1	1	1	2	2	2	1	Afadin-	and	alpha	-actinin-Binding
DUF4200	PF13863.1	gi|124027865|ref|YP_001013185.1|	-	0.00013	21.9	21.9	0.0041	17.0	0.3	4.0	1	1	3	4	4	4	1	Domain	of	unknown	function	(DUF4200)
COG2	PF06148.6	gi|124027865|ref|YP_001013185.1|	-	0.00014	21.7	20.8	0.00065	19.5	3.3	3.4	1	1	2	3	3	3	2	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AAA_27	PF13514.1	gi|124027865|ref|YP_001013185.1|	-	0.00014	19.7	19.6	0.0002	19.2	13.6	1.1	1	0	0	1	1	1	1	AAA	domain
CENP-Q	PF13094.1	gi|124027865|ref|YP_001013185.1|	-	0.00021	21.3	27.8	0.00063	19.7	11.5	3.0	1	1	2	3	3	3	2	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
BicD	PF09730.4	gi|124027865|ref|YP_001013185.1|	-	0.00024	19.6	22.4	0.0044	15.4	4.0	2.1	1	1	1	2	2	2	2	Microtubule-associated	protein	Bicaudal-D
DUF4164	PF13747.1	gi|124027865|ref|YP_001013185.1|	-	0.00027	21.0	23.5	0.058	13.5	2.4	3.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4164)
Syntaxin	PF00804.20	gi|124027865|ref|YP_001013185.1|	-	0.00027	21.0	28.6	0.012	15.7	0.7	3.3	1	1	2	3	3	3	2	Syntaxin
Tropomyosin_1	PF12718.2	gi|124027865|ref|YP_001013185.1|	-	0.00032	20.5	26.1	0.012	15.5	2.4	3.1	1	1	1	2	2	2	1	Tropomyosin	like
TMF_TATA_bd	PF12325.3	gi|124027865|ref|YP_001013185.1|	-	0.00034	20.3	24.6	0.14	11.9	3.0	3.6	1	1	2	3	3	3	1	TATA	element	modulatory	factor	1	TATA	binding
TMF_DNA_bd	PF12329.3	gi|124027865|ref|YP_001013185.1|	-	0.00037	20.2	35.1	0.027	14.2	7.8	4.4	1	1	3	4	4	4	2	TATA	element	modulatory	factor	1	DNA	binding
BLOC1_2	PF10046.4	gi|124027865|ref|YP_001013185.1|	-	0.0004	20.4	28.1	0.61	10.2	11.2	3.7	1	1	2	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
HrpB7	PF09486.5	gi|124027865|ref|YP_001013185.1|	-	0.00041	20.3	14.4	0.0046	16.8	4.3	2.8	1	1	1	2	2	2	2	Bacterial	type	III	secretion	protein	(HrpB7)
CENP-F_leu_zip	PF10473.4	gi|124027865|ref|YP_001013185.1|	-	0.00042	20.1	26.8	0.15	11.9	3.8	3.3	1	1	2	3	3	3	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF342	PF03961.8	gi|124027865|ref|YP_001013185.1|	-	0.00047	18.6	22.7	0.051	11.9	0.8	2.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF342)
Laminin_I	PF06008.9	gi|124027865|ref|YP_001013185.1|	-	0.00052	19.4	28.4	0.053	12.8	8.3	2.6	1	1	1	2	2	2	2	Laminin	Domain	I
Atg14	PF10186.4	gi|124027865|ref|YP_001013185.1|	-	0.00062	18.8	24.6	0.016	14.1	5.3	2.3	1	1	1	2	2	2	2	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
COG5	PF10392.4	gi|124027865|ref|YP_001013185.1|	-	0.00063	19.6	25.9	0.023	14.6	4.9	3.0	1	1	2	3	3	3	1	Golgi	transport	complex	subunit	5
WEMBL	PF05701.6	gi|124027865|ref|YP_001013185.1|	-	0.00065	18.2	28.7	0.017	13.6	4.7	1.9	1	1	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
APG6	PF04111.7	gi|124027865|ref|YP_001013185.1|	-	0.00067	18.8	24.1	0.042	12.9	4.2	2.1	1	1	1	2	2	2	2	Autophagy	protein	Apg6
AKNA	PF12443.3	gi|124027865|ref|YP_001013185.1|	-	0.00071	19.5	15.8	0.076	13.0	2.8	4.1	1	1	3	4	4	4	1	AT-hook-containing	transcription	factor
Bacillus_HBL	PF05791.6	gi|124027865|ref|YP_001013185.1|	-	0.00075	18.9	3.0	0.00075	18.9	2.1	3.2	1	1	2	3	3	3	1	Bacillus	haemolytic	enterotoxin	(HBL)
CALCOCO1	PF07888.6	gi|124027865|ref|YP_001013185.1|	-	0.00078	17.8	16.3	0.0013	17.0	11.3	1.4	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
FlxA	PF14282.1	gi|124027865|ref|YP_001013185.1|	-	0.00095	19.0	40.7	0.19	11.6	8.3	4.1	1	1	2	3	3	3	1	FlxA-like	protein
Cob_adeno_trans	PF01923.13	gi|124027865|ref|YP_001013185.1|	-	0.00096	18.9	17.3	0.032	14.0	2.7	3.3	1	1	2	3	3	3	1	Cobalamin	adenosyltransferase
PseudoU_synth_1	PF01416.15	gi|124027865|ref|YP_001013185.1|	-	0.0011	19.3	0.1	0.039	14.3	0.1	2.4	1	1	0	1	1	1	1	tRNA	pseudouridine	synthase
WXG100	PF06013.7	gi|124027865|ref|YP_001013185.1|	-	0.0014	18.6	25.1	0.36	10.8	4.2	4.7	2	2	2	4	4	4	1	Proteins	of	100	residues	with	WXG
Mnd1	PF03962.10	gi|124027865|ref|YP_001013185.1|	-	0.0016	18.1	20.7	0.013	15.1	8.0	2.7	1	1	1	2	2	2	1	Mnd1	family
GAS	PF13851.1	gi|124027865|ref|YP_001013185.1|	-	0.0016	17.6	23.0	0.03	13.4	15.8	2.6	1	1	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Phage_GP20	PF06810.6	gi|124027865|ref|YP_001013185.1|	-	0.0019	17.6	8.7	0.0019	17.6	6.1	3.3	1	1	2	3	3	3	1	Phage	minor	structural	protein	GP20
FlaC_arch	PF05377.6	gi|124027865|ref|YP_001013185.1|	-	0.0023	17.7	25.5	4.5	7.2	0.1	5.9	2	1	2	4	4	3	0	Flagella	accessory	protein	C	(FlaC)
CCDC144C	PF14915.1	gi|124027865|ref|YP_001013185.1|	-	0.0026	16.7	25.2	0.0054	15.6	17.5	1.5	1	1	0	1	1	1	1	CCDC144C	protein	coiled-coil	region
DUF3708	PF12501.3	gi|124027865|ref|YP_001013185.1|	-	0.0027	17.5	12.9	0.0037	17.1	1.1	3.0	1	1	2	3	3	3	1	Phosphate	ATP-binding	cassette	transporter
AIP3	PF03915.8	gi|124027865|ref|YP_001013185.1|	-	0.0032	16.4	20.0	0.011	14.6	13.9	1.8	1	1	0	1	1	1	1	Actin	interacting	protein	3
DUF489	PF04356.7	gi|124027865|ref|YP_001013185.1|	-	0.0033	17.0	20.4	0.1	12.1	5.0	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF489)
SF-assemblin	PF06705.6	gi|124027865|ref|YP_001013185.1|	-	0.0046	16.1	19.9	0.034	13.3	10.1	2.7	1	1	1	2	2	2	2	SF-assemblin/beta	giardin
CorA	PF01544.13	gi|124027865|ref|YP_001013185.1|	-	0.0047	15.9	21.4	0.0083	15.1	6.0	2.4	1	1	1	2	2	2	1	CorA-like	Mg2+	transporter	protein
TPR_MLP1_2	PF07926.7	gi|124027865|ref|YP_001013185.1|	-	0.0051	16.5	33.2	4.6	6.9	18.0	4.0	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Vps51	PF08700.6	gi|124027865|ref|YP_001013185.1|	-	0.0058	16.4	22.1	0.0072	16.1	2.3	4.5	1	1	1	3	3	3	1	Vps51/Vps67
KfrA_N	PF11740.3	gi|124027865|ref|YP_001013185.1|	-	0.0064	16.9	18.0	0.13	12.7	1.2	3.2	2	2	0	2	2	2	1	Plasmid	replication	region	DNA-binding	N-term
TACC	PF05010.9	gi|124027865|ref|YP_001013185.1|	-	0.0065	16.2	15.2	0.0092	15.7	10.5	1.1	1	0	0	1	1	1	1	Transforming	acidic	coiled-coil-containing	protein	(TACC)
Laminin_II	PF06009.7	gi|124027865|ref|YP_001013185.1|	-	0.0074	16.0	26.3	0.24	11.1	8.4	3.1	1	1	2	3	3	3	2	Laminin	Domain	II
DivIC	PF04977.10	gi|124027865|ref|YP_001013185.1|	-	0.0081	15.6	31.3	0.41	10.1	3.9	5.5	1	1	3	5	5	5	1	Septum	formation	initiator
FH2	PF02181.18	gi|124027865|ref|YP_001013185.1|	-	0.0081	15.0	15.2	0.034	13.0	3.3	2.6	1	1	1	2	2	2	1	Formin	Homology	2	Domain
Tropomyosin	PF00261.15	gi|124027865|ref|YP_001013185.1|	-	0.0084	15.2	19.9	0.04	12.9	5.0	2.8	1	1	1	2	2	2	2	Tropomyosin
CCDC155	PF14662.1	gi|124027865|ref|YP_001013185.1|	-	0.0087	15.6	27.2	0.024	14.2	15.4	2.7	1	1	1	2	2	2	1	Coiled-coil	region	of	CCDC155
DUF1192	PF06698.6	gi|124027865|ref|YP_001013185.1|	-	0.0088	15.8	14.3	0.053	13.3	0.3	4.0	3	2	1	5	5	3	1	Protein	of	unknown	function	(DUF1192)
Phage_GPO	PF05929.6	gi|124027865|ref|YP_001013185.1|	-	0.0089	15.3	17.8	0.067	12.4	3.5	2.6	1	1	1	2	2	2	1	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF972	PF06156.8	gi|124027865|ref|YP_001013185.1|	-	0.01	16.1	23.0	0.69	10.2	3.4	4.1	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF972)
DUF4198	PF10670.4	gi|124027865|ref|YP_001013185.1|	-	0.011	15.7	0.3	0.024	14.6	0.2	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4198)
DUF4140	PF13600.1	gi|124027865|ref|YP_001013185.1|	-	0.011	16.1	26.4	2.4	8.6	0.4	5.1	1	1	3	4	4	4	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4404	PF14357.1	gi|124027865|ref|YP_001013185.1|	-	0.011	16.0	30.6	0.41	11.0	0.4	4.2	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF4404)
Nup54	PF13874.1	gi|124027865|ref|YP_001013185.1|	-	0.012	15.2	4.3	0.012	15.2	3.0	2.7	1	1	0	2	2	2	0	Nucleoporin	complex	subunit	54
Syntaxin-6_N	PF09177.6	gi|124027865|ref|YP_001013185.1|	-	0.012	16.0	24.2	0.027	14.8	1.3	4.3	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
THOC7	PF05615.8	gi|124027865|ref|YP_001013185.1|	-	0.013	15.7	24.1	0.31	11.2	1.8	3.7	1	1	1	2	2	2	0	Tho	complex	subunit	7
Tektin	PF03148.9	gi|124027865|ref|YP_001013185.1|	-	0.014	13.9	21.5	0.03	12.8	10.8	2.9	1	1	0	2	2	2	0	Tektin	family
phage_tail_N	PF08400.5	gi|124027865|ref|YP_001013185.1|	-	0.014	15.1	2.5	0.059	13.0	1.7	2.1	1	0	0	1	1	1	0	Prophage	tail	fibre	N-terminal
Snapin_Pallidin	PF14712.1	gi|124027865|ref|YP_001013185.1|	-	0.015	15.5	26.8	5.9	7.2	6.0	4.0	1	1	2	3	3	3	0	Snapin/Pallidin
Amnionless	PF14828.1	gi|124027865|ref|YP_001013185.1|	-	0.016	13.6	6.6	0.025	13.0	4.6	1.2	1	0	0	1	1	1	0	Amnionless
RasGAP_C	PF03836.10	gi|124027865|ref|YP_001013185.1|	-	0.017	14.7	17.2	0.021	14.4	3.2	2.7	1	1	1	2	2	2	0	RasGAP	C-terminus
RmuC	PF02646.11	gi|124027865|ref|YP_001013185.1|	-	0.019	13.8	23.9	0.71	8.6	5.6	3.2	1	1	2	3	3	3	0	RmuC	family
Spc24	PF08286.6	gi|124027865|ref|YP_001013185.1|	-	0.019	14.6	28.6	1.2	8.8	2.9	4.9	1	1	3	4	4	4	0	Spc24	subunit	of	Ndc80
FliD_C	PF07195.7	gi|124027865|ref|YP_001013185.1|	-	0.02	14.1	23.4	0.54	9.5	5.3	3.1	1	1	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Occludin_ELL	PF07303.8	gi|124027865|ref|YP_001013185.1|	-	0.021	15.5	14.1	11	6.8	0.1	4.5	1	1	3	4	4	4	0	Occludin	homology	domain
OmpH	PF03938.9	gi|124027865|ref|YP_001013185.1|	-	0.021	14.7	23.0	0.21	11.5	9.0	2.5	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
ATP-synt_D	PF01813.12	gi|124027865|ref|YP_001013185.1|	-	0.021	14.3	14.8	1.9	7.9	10.2	3.2	1	1	0	1	1	1	0	ATP	synthase	subunit	D
CCDC-167	PF15188.1	gi|124027865|ref|YP_001013185.1|	-	0.021	14.7	15.2	1.1	9.2	4.5	4.0	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
DUF2730	PF10805.3	gi|124027865|ref|YP_001013185.1|	-	0.021	14.5	18.8	0.088	12.5	0.6	4.4	2	2	2	4	4	3	0	Protein	of	unknown	function	(DUF2730)
Lge1	PF11488.3	gi|124027865|ref|YP_001013185.1|	-	0.021	14.9	16.6	0.39	10.9	0.1	4.5	1	1	2	3	3	2	0	Transcriptional	regulatory	protein	LGE1
DUF4618	PF15397.1	gi|124027865|ref|YP_001013185.1|	-	0.022	14.1	22.9	0.32	10.2	3.8	3.5	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4618)
DUF3283	PF11686.3	gi|124027865|ref|YP_001013185.1|	-	0.022	14.5	0.2	0.091	12.5	0.2	2.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3283)
Cna_B	PF05738.8	gi|124027865|ref|YP_001013185.1|	-	0.022	14.5	5.2	0.89	9.3	1.3	2.6	2	0	0	2	2	2	0	Cna	protein	B-type	domain
Hemerythrin	PF01814.18	gi|124027865|ref|YP_001013185.1|	-	0.022	14.9	0.2	7	6.8	0.0	3.0	2	1	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
RRF_GI	PF12614.3	gi|124027865|ref|YP_001013185.1|	-	0.023	14.5	14.0	0.43	10.4	4.0	2.4	1	1	1	2	2	2	0	Ribosome	recycling	factor
Tup_N	PF08581.5	gi|124027865|ref|YP_001013185.1|	-	0.023	14.8	16.5	0.86	9.8	0.1	3.4	1	1	2	3	3	3	0	Tup	N-terminal
DUF2012	PF09430.5	gi|124027865|ref|YP_001013185.1|	-	0.025	14.4	0.1	0.057	13.2	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2012)
UPF0118	PF01594.11	gi|124027865|ref|YP_001013185.1|	-	0.026	13.5	14.5	0.11	11.5	2.2	3.0	1	1	2	3	3	3	0	Domain	of	unknown	function	DUF20
DUF479	PF04336.7	gi|124027865|ref|YP_001013185.1|	-	0.026	14.6	5.9	0.11	12.5	1.0	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF479
DUF3040	PF11239.3	gi|124027865|ref|YP_001013185.1|	-	0.026	14.5	3.0	0.028	14.4	0.1	2.5	3	0	0	3	3	1	0	Protein	of	unknown	function	(DUF3040)
FliJ	PF02050.11	gi|124027865|ref|YP_001013185.1|	-	0.027	14.5	26.1	2.9	7.9	0.1	3.6	1	1	2	3	3	3	0	Flagellar	FliJ	protein
DUF904	PF06005.7	gi|124027865|ref|YP_001013185.1|	-	0.032	14.5	28.4	0.39	11.0	7.1	3.7	1	1	3	4	4	3	0	Protein	of	unknown	function	(DUF904)
Corona_S2	PF01601.11	gi|124027865|ref|YP_001013185.1|	-	0.032	12.3	25.8	0.0084	14.2	5.3	2.6	1	1	2	3	3	3	0	Coronavirus	S2	glycoprotein
YlqD	PF11068.3	gi|124027865|ref|YP_001013185.1|	-	0.037	14.0	23.0	3.5	7.6	1.6	3.7	1	1	2	3	3	3	0	YlqD	protein
EMP24_GP25L	PF01105.19	gi|124027865|ref|YP_001013185.1|	-	0.038	13.7	15.0	2.1	7.9	0.3	4.1	1	1	1	2	2	2	0	emp24/gp25L/p24	family/GOLD
DUF1515	PF07439.6	gi|124027865|ref|YP_001013185.1|	-	0.04	13.7	0.4	0.04	13.7	0.3	3.6	2	1	0	3	3	2	0	Protein	of	unknown	function	(DUF1515)
V_ATPase_I	PF01496.14	gi|124027865|ref|YP_001013185.1|	-	0.041	11.7	20.1	0.65	7.7	4.3	3.0	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Dioxygenase_C	PF00775.16	gi|124027865|ref|YP_001013185.1|	-	0.044	13.0	0.0	0.09	12.0	0.0	1.6	1	0	0	1	1	1	0	Dioxygenase
YjcZ	PF13990.1	gi|124027865|ref|YP_001013185.1|	-	0.047	12.8	19.0	0.3	10.1	2.6	3.1	1	1	2	3	3	3	0	YjcZ-like	protein
Cytochrom_C_2	PF01322.15	gi|124027865|ref|YP_001013185.1|	-	0.048	14.1	4.8	1.5	9.3	0.9	2.5	1	1	1	2	2	2	0	Cytochrome	C'
DUF872	PF05915.7	gi|124027865|ref|YP_001013185.1|	-	0.054	13.3	0.7	0.26	11.1	0.1	2.1	2	0	0	2	2	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Cep57_MT_bd	PF06657.8	gi|124027865|ref|YP_001013185.1|	-	0.055	13.4	22.6	0.18	11.8	3.1	4.3	1	1	2	4	4	4	0	Centrosome	microtubule-binding	domain	of	Cep57
HAUS-augmin3	PF14932.1	gi|124027865|ref|YP_001013185.1|	-	0.056	12.6	30.2	0.47	9.6	5.6	2.1	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
LXG	PF04740.7	gi|124027865|ref|YP_001013185.1|	-	0.066	12.9	24.9	0.1	12.3	4.9	2.4	1	1	1	2	2	2	0	LXG	domain	of	WXG	superfamily
DUF2317	PF10079.4	gi|124027865|ref|YP_001013185.1|	-	0.067	11.7	18.6	0.28	9.7	6.6	2.6	1	1	2	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
MitMem_reg	PF13012.1	gi|124027865|ref|YP_001013185.1|	-	0.08	13.0	20.4	0.023	14.7	3.2	3.1	1	1	2	3	3	3	0	Maintenance	of	mitochondrial	structure	and	function
GP41	PF00517.12	gi|124027865|ref|YP_001013185.1|	-	0.089	12.3	21.1	4.4	6.8	10.4	3.7	1	1	1	2	2	2	0	Retroviral	envelope	protein
DUF4201	PF13870.1	gi|124027865|ref|YP_001013185.1|	-	0.091	12.1	20.2	2.5	7.5	8.1	3.4	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4201)
Vps53_N	PF04100.7	gi|124027865|ref|YP_001013185.1|	-	0.094	11.4	22.9	0.044	12.5	2.9	2.4	1	1	2	3	3	3	0	Vps53-like,	N-terminal
Isy1	PF06246.7	gi|124027865|ref|YP_001013185.1|	-	0.1	11.9	4.7	0.18	11.1	3.2	1.3	1	0	0	1	1	1	0	Isy1-like	splicing	family
Jnk-SapK_ap_N	PF09744.4	gi|124027865|ref|YP_001013185.1|	-	0.11	12.5	14.2	0.69	9.8	0.1	2.4	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
Macoilin	PF09726.4	gi|124027865|ref|YP_001013185.1|	-	0.11	10.7	18.8	0.26	9.5	13.0	1.4	1	1	0	1	1	1	0	Transmembrane	protein
DUF2935	PF11155.3	gi|124027865|ref|YP_001013185.1|	-	0.12	12.4	12.2	1.8	8.6	0.2	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF2935)
Ax_dynein_light	PF10211.4	gi|124027865|ref|YP_001013185.1|	-	0.14	11.9	17.3	0.35	10.6	5.9	2.7	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
XhlA	PF10779.4	gi|124027865|ref|YP_001013185.1|	-	0.18	11.7	23.6	31	4.5	11.6	4.3	1	1	2	3	3	3	0	Haemolysin	XhlA
DUF2968	PF11180.3	gi|124027865|ref|YP_001013185.1|	-	0.18	11.1	21.2	0.091	12.1	2.8	2.4	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF2968)
Spc97_Spc98	PF04130.8	gi|124027865|ref|YP_001013185.1|	-	0.18	10.0	14.2	0.2	9.9	2.7	2.2	1	1	1	2	2	2	0	Spc97	/	Spc98	family
ApoLp-III	PF07464.6	gi|124027865|ref|YP_001013185.1|	-	0.18	11.7	21.0	1.3	9.0	4.8	2.4	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
FimP	PF09766.4	gi|124027865|ref|YP_001013185.1|	-	0.19	10.7	19.1	0.27	10.2	6.7	2.6	1	1	1	2	2	2	0	Fms-interacting	protein
DUF2051	PF09738.4	gi|124027865|ref|YP_001013185.1|	-	0.19	10.9	20.0	0.031	13.5	4.7	2.1	1	1	1	2	2	2	0	Double	stranded	RNA	binding	protein	(DUF2051)
TMPIT	PF07851.8	gi|124027865|ref|YP_001013185.1|	-	0.2	10.7	16.2	4	6.4	0.1	2.9	1	1	2	3	3	3	0	TMPIT-like	protein
Fzo_mitofusin	PF04799.8	gi|124027865|ref|YP_001013185.1|	-	0.2	11.0	22.8	0.74	9.1	5.0	3.8	1	1	2	3	3	3	0	fzo-like	conserved	region
DUF641	PF04859.7	gi|124027865|ref|YP_001013185.1|	-	0.21	11.3	18.9	1.2	8.9	1.8	3.7	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
LOH1CR12	PF10158.4	gi|124027865|ref|YP_001013185.1|	-	0.22	11.3	12.4	0.42	10.4	3.2	2.6	1	1	1	2	2	2	0	Tumour	suppressor	protein
ACCA	PF03255.9	gi|124027865|ref|YP_001013185.1|	-	0.22	11.0	13.3	0.62	9.6	2.4	3.4	1	1	2	3	3	3	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF3086	PF11285.3	gi|124027865|ref|YP_001013185.1|	-	0.23	10.2	16.1	0.78	8.4	2.1	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3086)
DUF3450	PF11932.3	gi|124027865|ref|YP_001013185.1|	-	0.25	10.5	27.9	0.66	9.1	8.2	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Spectrin	PF00435.16	gi|124027865|ref|YP_001013185.1|	-	0.28	11.5	19.7	0.52	10.6	1.7	2.9	1	1	2	3	3	3	0	Spectrin	repeat
Mod_r	PF07200.8	gi|124027865|ref|YP_001013185.1|	-	0.28	11.0	24.6	0.84	9.5	4.3	3.0	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
Peptidase_S46	PF10459.4	gi|124027865|ref|YP_001013185.1|	-	0.31	9.4	9.1	0.44	8.9	6.3	1.2	1	0	0	1	1	1	0	Peptidase	S46
Sec34	PF04136.10	gi|124027865|ref|YP_001013185.1|	-	0.33	10.6	17.4	0.56	9.8	3.3	2.9	1	1	2	3	3	3	0	Sec34-like	family
Nsp1_C	PF05064.8	gi|124027865|ref|YP_001013185.1|	-	0.34	10.5	26.8	0.34	10.5	1.4	4.0	1	1	2	4	4	4	0	Nsp1-like	C-terminal	region
HR1	PF02185.11	gi|124027865|ref|YP_001013185.1|	-	0.36	10.5	34.3	1.2	8.9	5.8	4.9	1	1	4	5	5	5	0	Hr1	repeat
Cluap1	PF10234.4	gi|124027865|ref|YP_001013185.1|	-	0.36	9.9	24.6	6.6	5.8	8.8	3.0	1	1	1	2	2	2	0	Clusterin-associated	protein-1
DUF16	PF01519.11	gi|124027865|ref|YP_001013185.1|	-	0.37	11.0	16.1	1.5	9.0	6.2	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
DUF2205	PF10224.4	gi|124027865|ref|YP_001013185.1|	-	0.39	10.3	19.3	1.9	8.1	1.6	4.5	2	2	2	4	4	4	0	Predicted	coiled-coil	protein	(DUF2205)
Uds1	PF15456.1	gi|124027865|ref|YP_001013185.1|	-	0.41	10.6	20.7	1.4	8.9	4.9	3.1	1	1	2	3	3	3	0	Up-regulated	During	Septation
zf-C4H2	PF10146.4	gi|124027865|ref|YP_001013185.1|	-	0.42	10.6	14.0	0.55	10.2	6.2	2.1	1	1	1	2	2	2	0	Zinc	finger-containing	protein
Lectin_N	PF03954.9	gi|124027865|ref|YP_001013185.1|	-	0.42	10.0	24.5	1.1	8.6	2.0	3.8	1	1	3	4	4	4	0	Hepatic	lectin,	N-terminal	domain
Fmp27_WPPW	PF10359.4	gi|124027865|ref|YP_001013185.1|	-	0.43	8.9	18.9	1.8	6.8	3.0	2.6	1	1	2	3	3	3	0	RNA	pol	II	promoter	Fmp27	protein	domain
Peripla_BP_2	PF01497.13	gi|124027865|ref|YP_001013185.1|	-	0.46	9.5	9.7	1.5	7.8	0.5	3.8	1	1	2	3	3	3	0	Periplasmic	binding	protein
DUF3585	PF12130.3	gi|124027865|ref|YP_001013185.1|	-	0.46	10.3	19.2	24	4.7	9.7	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3585)
IMD	PF08397.6	gi|124027865|ref|YP_001013185.1|	-	0.46	9.7	10.9	1	8.6	7.4	1.6	1	1	0	1	1	1	0	IRSp53/MIM	homology	domain
DUF1640	PF07798.6	gi|124027865|ref|YP_001013185.1|	-	0.47	10.4	23.2	0.28	11.1	8.4	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1640)
DUF724	PF05266.9	gi|124027865|ref|YP_001013185.1|	-	0.48	10.0	16.1	0.64	9.6	9.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
DUF848	PF05852.6	gi|124027865|ref|YP_001013185.1|	-	0.6	9.9	20.6	1.3	8.8	2.3	3.0	1	1	2	3	3	3	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
YPEB	PF14620.1	gi|124027865|ref|YP_001013185.1|	-	0.62	9.0	22.1	2.8	6.8	1.2	2.6	1	1	2	3	3	3	0	YpeB	sporulation
Enkurin	PF13864.1	gi|124027865|ref|YP_001013185.1|	-	0.67	10.1	16.5	0.86	9.8	3.1	3.8	1	1	1	3	3	3	0	Calmodulin-binding
Fez1	PF06818.10	gi|124027865|ref|YP_001013185.1|	-	0.68	9.9	19.3	0.49	10.3	8.9	2.2	1	1	1	2	2	2	0	Fez1
GOLGA2L5	PF15070.1	gi|124027865|ref|YP_001013185.1|	-	0.71	8.2	21.4	1.5	7.1	13.7	1.9	1	1	1	2	2	2	0	Putative	golgin	subfamily	A	member	2-like	protein	5
Vip3A_N	PF12495.3	gi|124027865|ref|YP_001013185.1|	-	0.72	9.5	18.5	0.27	10.8	7.5	2.6	1	1	2	3	3	3	0	Vegetative	insecticide	protein	3A	N	terminal
LPP	PF04728.8	gi|124027865|ref|YP_001013185.1|	-	0.75	9.6	24.0	1.7	8.5	2.3	5.2	2	1	3	6	6	6	0	Lipoprotein	leucine-zipper
TipAS	PF07739.8	gi|124027865|ref|YP_001013185.1|	-	0.77	10.0	3.7	0.95	9.7	0.9	2.1	2	1	0	2	2	1	0	TipAS	antibiotic-recognition	domain
DUF1804	PF08822.6	gi|124027865|ref|YP_001013185.1|	-	0.79	9.4	6.4	0.23	11.1	0.5	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1804)
DUF3782	PF12644.2	gi|124027865|ref|YP_001013185.1|	-	0.84	9.4	3.7	2.7	7.8	1.1	2.6	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF3782)
Syntaxin-18_N	PF10496.4	gi|124027865|ref|YP_001013185.1|	-	0.84	9.5	6.6	2.5	7.9	0.2	3.8	1	1	3	4	4	3	0	SNARE-complex	protein	Syntaxin-18	N-terminus
PhageMin_Tail	PF10145.4	gi|124027865|ref|YP_001013185.1|	-	0.87	9.1	15.0	1.7	8.2	10.4	1.5	1	0	0	1	1	1	0	Phage-related	minor	tail	protein
DivIVA	PF05103.8	gi|124027865|ref|YP_001013185.1|	-	0.99	9.4	22.8	0.93	9.5	3.2	3.9	1	1	1	3	3	3	0	DivIVA	protein
V-SNARE	PF05008.10	gi|124027865|ref|YP_001013185.1|	-	1.2	9.3	26.3	5.8	7.1	4.2	4.2	1	1	2	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
LUC7	PF03194.10	gi|124027865|ref|YP_001013185.1|	-	1.3	8.5	15.0	3.3	7.1	2.5	2.2	1	1	1	2	2	2	0	LUC7	N_terminus
T2SF	PF00482.18	gi|124027865|ref|YP_001013185.1|	-	1.4	8.8	11.2	4.1	7.3	1.5	2.8	1	1	1	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
DUF2802	PF10975.3	gi|124027865|ref|YP_001013185.1|	-	1.5	8.6	20.0	2	8.2	1.0	5.4	3	2	2	5	5	4	0	Protein	of	unknown	function	(DUF2802)
Hpt	PF01627.18	gi|124027865|ref|YP_001013185.1|	-	1.6	8.8	15.5	1.8	8.5	4.4	3.2	1	1	1	2	2	1	0	Hpt	domain
YkuI_C	PF10388.4	gi|124027865|ref|YP_001013185.1|	-	1.6	8.4	9.2	0.49	10.0	2.6	2.4	2	1	0	2	2	2	0	EAL-domain	associated	signalling	protein	domain
Phasin	PF05597.6	gi|124027865|ref|YP_001013185.1|	-	1.7	8.3	18.4	1.1	9.0	6.2	3.1	1	1	2	3	3	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
GrpE	PF01025.14	gi|124027865|ref|YP_001013185.1|	-	1.8	8.1	19.1	15	5.0	2.2	3.1	1	1	1	2	2	2	0	GrpE
DUF2580	PF10824.3	gi|124027865|ref|YP_001013185.1|	-	1.8	8.9	10.0	16	5.9	0.2	3.7	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF2580)
APG17	PF04108.7	gi|124027865|ref|YP_001013185.1|	-	2	7.1	24.1	7.4	5.2	16.7	1.9	1	1	0	1	1	1	0	Autophagy	protein	Apg17
FemAB	PF02388.11	gi|124027865|ref|YP_001013185.1|	-	2.1	6.9	16.3	0.52	8.9	2.3	3.1	1	1	3	4	4	4	0	FemAB	family
DUF745	PF05335.8	gi|124027865|ref|YP_001013185.1|	-	2.3	7.7	22.2	0.062	12.8	6.5	2.6	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF745)
DNA_photolyase	PF00875.13	gi|124027865|ref|YP_001013185.1|	-	2.3	7.9	7.8	7.1	6.3	0.5	3.4	1	1	2	3	3	3	0	DNA	photolyase
ERM	PF00769.14	gi|124027865|ref|YP_001013185.1|	-	2.4	7.6	17.0	94	2.4	11.9	2.3	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
CDC37_N	PF03234.9	gi|124027865|ref|YP_001013185.1|	-	2.5	8.3	16.6	5.4	7.2	3.4	2.3	1	1	1	2	2	2	0	Cdc37	N	terminal	kinase	binding
ATP-synt_E_2	PF08112.6	gi|124027865|ref|YP_001013185.1|	-	2.5	8.2	6.7	0.38	10.8	1.3	2.2	2	0	0	2	2	1	0	ATP	synthase	epsilon	subunit
MbeD_MobD	PF04899.7	gi|124027865|ref|YP_001013185.1|	-	2.6	8.0	21.6	5.2	7.0	0.9	4.0	1	1	2	3	3	3	0	MbeD/MobD	like
DASH_Dam1	PF08653.5	gi|124027865|ref|YP_001013185.1|	-	2.8	7.7	14.5	19	5.1	0.5	5.1	2	2	3	5	5	5	0	DASH	complex	subunit	Dam1
H-kinase_dim	PF02895.9	gi|124027865|ref|YP_001013185.1|	-	2.9	8.3	24.6	1.2	9.4	2.3	4.2	1	1	2	3	3	3	0	Signal	transducing	histidine	kinase,	homodimeric	domain
DUF1825	PF08855.5	gi|124027865|ref|YP_001013185.1|	-	3.3	7.7	8.0	7.9	6.5	0.4	3.7	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1825)
DUF2203	PF09969.4	gi|124027865|ref|YP_001013185.1|	-	3.7	7.7	14.9	46	4.2	2.6	3.2	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
ING	PF12998.2	gi|124027865|ref|YP_001013185.1|	-	3.8	7.8	18.0	7	6.9	0.9	3.1	1	1	1	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
DUF148	PF02520.12	gi|124027865|ref|YP_001013185.1|	-	3.8	7.3	24.0	1.3	8.7	3.0	3.0	1	1	0	2	2	2	0	Domain	of	unknown	function	DUF148
Vps52	PF04129.7	gi|124027865|ref|YP_001013185.1|	-	4.1	5.8	20.9	8.6	4.7	0.1	2.6	1	1	1	2	2	2	0	Vps52	/	Sac2	family
DNA_topoisoIV	PF00521.15	gi|124027865|ref|YP_001013185.1|	-	4.2	6.1	18.2	1.6	7.4	9.6	1.8	1	1	1	2	2	2	0	DNA	gyrase/topoisomerase	IV,	subunit	A
Tnp_P_element	PF12017.3	gi|124027865|ref|YP_001013185.1|	-	4.3	6.5	15.7	0.9	8.7	3.1	3.7	1	1	3	5	5	5	0	Transposase	protein
Cortex-I_coil	PF09304.5	gi|124027865|ref|YP_001013185.1|	-	4.5	7.3	27.1	11	6.0	4.6	3.6	1	1	2	3	3	3	0	Cortexillin	I,	coiled	coil
AbiH	PF14253.1	gi|124027865|ref|YP_001013185.1|	-	4.5	6.7	11.5	1.7	8.2	0.8	2.2	1	1	1	2	2	2	0	Bacteriophage	abortive	infection	AbiH
DUF2951	PF11166.3	gi|124027865|ref|YP_001013185.1|	-	5.4	6.9	10.0	4.4	7.2	1.8	3.2	1	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2951)
Glutaredoxin2_C	PF04399.8	gi|124027865|ref|YP_001013185.1|	-	6	6.4	15.4	3.7	7.1	0.0	3.8	1	1	3	4	4	3	0	Glutaredoxin	2,	C	terminal	domain
DUF3407	PF11887.3	gi|124027865|ref|YP_001013185.1|	-	6	6.0	15.1	1.4	8.1	5.4	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3407)
RNase_HII	PF01351.13	gi|124027865|ref|YP_001013185.1|	-	6	6.4	10.4	2.8	7.5	3.2	2.2	2	0	0	2	2	2	0	Ribonuclease	HII
PEP-utilisers_N	PF05524.8	gi|124027865|ref|YP_001013185.1|	-	6.4	6.5	19.8	5.3	6.8	2.9	3.4	1	1	2	3	3	3	0	PEP-utilising	enzyme,	N-terminal
DUF3510	PF12022.3	gi|124027865|ref|YP_001013185.1|	-	7.1	6.7	10.2	23	5.0	3.5	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3510)
HSCB_C	PF07743.8	gi|124027865|ref|YP_001013185.1|	-	7.3	7.1	23.0	5.4	7.5	0.8	4.3	1	1	2	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
Cauli_AT	PF03233.8	gi|124027865|ref|YP_001013185.1|	-	7.5	6.2	14.9	49	3.5	1.3	3.3	1	1	2	3	3	3	0	Aphid	transmission	protein
Cytochrom_B562	PF07361.6	gi|124027865|ref|YP_001013185.1|	-	7.9	6.9	15.1	3.8	7.9	5.3	3.0	1	1	1	2	2	1	0	Cytochrome	b562
Nbl1_Borealin_N	PF10444.4	gi|124027865|ref|YP_001013185.1|	-	7.9	5.9	8.9	28	4.1	0.2	3.9	3	1	1	4	4	3	0	Nbl1	/	Borealin	N	terminal
Med10	PF09748.4	gi|124027865|ref|YP_001013185.1|	-	8.1	6.2	17.4	4.8	7.0	1.4	3.7	2	1	0	2	2	2	0	Transcription	factor	subunit	Med10	of	Mediator	complex
TrbL	PF04610.9	gi|124027865|ref|YP_001013185.1|	-	8.2	6.0	15.6	0.28	10.8	0.9	3.2	2	1	0	3	3	2	0	TrbL/VirB6	plasmid	conjugal	transfer	protein
HlyD	PF00529.15	gi|124027865|ref|YP_001013185.1|	-	9	5.5	33.2	7.3	5.7	9.6	2.7	1	1	1	2	2	2	0	HlyD	family	secretion	protein
PspB	PF06667.7	gi|124027865|ref|YP_001013185.1|	-	9.5	6.2	21.1	4.2	7.3	0.0	5.3	1	1	5	6	6	4	0	Phage	shock	protein	B
Phage_Mu_Gam	PF07352.7	gi|124027865|ref|YP_001013185.1|	-	9.5	5.7	16.7	21	4.6	0.3	3.4	1	1	1	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
Peptidase_S8	PF00082.17	gi|124027866|ref|YP_001013186.1|	-	7.2e-16	58.1	27.8	4.8e-15	55.4	19.3	2.3	1	1	0	1	1	1	1	Subtilase	family
FG-GAP	PF01839.18	gi|124027866|ref|YP_001013186.1|	-	0.0021	17.7	8.7	0.043	13.5	0.7	3.2	2	0	0	2	2	2	2	FG-GAP	repeat
Succ_CoA_lig	PF13607.1	gi|124027867|ref|YP_001013187.1|	-	7.9e-52	174.5	0.5	5e-51	171.9	0.0	2.4	3	0	0	3	3	3	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|124027867|ref|YP_001013187.1|	-	2.5e-31	108.2	0.2	1.1e-29	102.9	0.1	2.8	3	1	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|124027867|ref|YP_001013187.1|	-	1.1e-15	57.9	0.7	6.2e-15	55.4	0.1	2.6	4	0	0	4	4	4	1	CoA	binding	domain
F420_oxidored	PF03807.12	gi|124027867|ref|YP_001013187.1|	-	0.013	15.8	0.4	2.9	8.3	0.1	3.3	3	1	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
DJ-1_PfpI	PF01965.19	gi|124027868|ref|YP_001013188.1|	-	6e-32	110.1	0.0	6.8e-32	109.9	0.0	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|124027868|ref|YP_001013188.1|	-	4.5e-11	42.3	0.0	6e-11	41.8	0.0	1.3	1	1	0	1	1	1	1	Putative	amidotransferase
GATase_3	PF07685.9	gi|124027868|ref|YP_001013188.1|	-	8.5e-05	22.2	0.0	0.00013	21.6	0.0	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|124027868|ref|YP_001013188.1|	-	0.00011	21.7	0.0	0.00014	21.3	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
URO-D	PF01208.12	gi|124027868|ref|YP_001013188.1|	-	0.0025	16.7	0.0	0.0031	16.4	0.0	1.1	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Peptidase_C26	PF07722.8	gi|124027868|ref|YP_001013188.1|	-	0.017	14.5	0.0	0.041	13.3	0.0	1.5	1	1	0	1	1	1	0	Peptidase	C26
Succ_CoA_lig	PF13607.1	gi|124027868|ref|YP_001013188.1|	-	0.063	12.8	0.1	0.2	11.2	0.0	1.8	2	0	0	2	2	2	0	Succinyl-CoA	ligase	like	flavodoxin	domain
SNO	PF01174.14	gi|124027868|ref|YP_001013188.1|	-	0.093	12.3	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	SNO	glutamine	amidotransferase	family
DUF2188	PF09954.4	gi|124027868|ref|YP_001013188.1|	-	0.11	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
PhoU	PF01895.14	gi|124027870|ref|YP_001013190.1|	-	4.4e-19	68.7	4.5	3.5e-13	49.8	1.2	2.3	2	0	0	2	2	2	2	PhoU	domain
DUF1470	PF07336.6	gi|124027870|ref|YP_001013190.1|	-	2	8.7	5.8	0.72	10.1	0.9	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1470)
DUF2153	PF09921.4	gi|124027871|ref|YP_001013191.1|	-	1.8e-58	195.6	2.4	2.1e-58	195.4	1.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
DUF1912	PF08930.5	gi|124027871|ref|YP_001013191.1|	-	0.0061	16.6	0.5	0.23	11.5	0.1	2.2	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF1912)
OSCP	PF00213.13	gi|124027871|ref|YP_001013191.1|	-	0.031	14.1	0.0	0.062	13.1	0.0	1.5	1	1	0	1	1	1	0	ATP	synthase	delta	(OSCP)	subunit
AFOR_C	PF01314.13	gi|124027873|ref|YP_001013193.1|	-	2.8e-143	477.2	0.0	3.5e-143	476.8	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|124027873|ref|YP_001013193.1|	-	5.8e-79	264.1	0.0	8.8e-79	263.5	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
DUF4309	PF14172.1	gi|124027873|ref|YP_001013193.1|	-	0.14	12.1	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4309)
Fer4_17	PF13534.1	gi|124027874|ref|YP_001013194.1|	-	1.1e-09	38.4	7.5	1.2e-09	38.3	2.5	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124027874|ref|YP_001013194.1|	-	5.2e-09	36.0	4.0	5.2e-09	36.0	2.8	2.1	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124027874|ref|YP_001013194.1|	-	1.2e-06	28.6	2.4	2.7e-06	27.5	0.0	2.5	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
CCG	PF02754.11	gi|124027874|ref|YP_001013194.1|	-	4e-05	23.5	0.0	0.0014	18.6	0.1	3.1	3	0	0	3	3	3	1	Cysteine-rich	domain
Fer4_7	PF12838.2	gi|124027874|ref|YP_001013194.1|	-	5.2e-05	23.5	4.3	5.2e-05	23.5	3.0	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124027874|ref|YP_001013194.1|	-	0.0011	18.6	7.1	0.0011	18.6	4.9	2.7	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124027874|ref|YP_001013194.1|	-	0.0065	16.8	1.1	0.0065	16.8	0.7	3.1	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124027874|ref|YP_001013194.1|	-	0.0097	15.7	19.4	0.073	13.0	1.8	4.0	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|124027874|ref|YP_001013194.1|	-	0.038	14.5	4.4	0.038	14.5	3.0	3.5	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124027874|ref|YP_001013194.1|	-	1.1	9.1	17.8	2.7	7.9	1.3	3.2	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124027874|ref|YP_001013194.1|	-	7	6.4	26.2	0.037	13.6	2.8	3.9	4	0	0	4	4	4	0	4Fe-4S	binding	domain
MFS_1	PF07690.11	gi|124027879|ref|YP_001013199.1|	-	2.1e-06	26.7	18.4	7e-05	21.7	8.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF134	PF02001.11	gi|124027880|ref|YP_001013200.1|	-	0.014	15.3	0.0	1.7	8.5	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF134
Band_7	PF01145.20	gi|124027881|ref|YP_001013201.1|	-	1.4e-36	126.0	4.6	1.8e-36	125.7	3.2	1.1	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|124027881|ref|YP_001013201.1|	-	0.0065	16.0	0.0	0.01	15.3	0.0	1.4	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
PqqD	PF05402.7	gi|124027881|ref|YP_001013201.1|	-	0.12	12.3	0.4	0.32	11.0	0.3	1.8	1	0	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
ER-remodelling	PF14755.1	gi|124027881|ref|YP_001013201.1|	-	0.23	11.5	0.1	0.23	11.5	0.1	1.7	2	0	0	2	2	2	0	Intracellular	membrane	remodeller
4HBT	PF03061.17	gi|124027882|ref|YP_001013202.1|	-	5e-08	32.9	0.5	7.4e-08	32.4	0.3	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF2294	PF10057.4	gi|124027882|ref|YP_001013202.1|	-	0.083	12.5	0.2	5.8	6.6	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2294)
UPRTase	PF14681.1	gi|124027883|ref|YP_001013203.1|	-	1.4e-48	164.8	0.0	1.6e-48	164.6	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.22	gi|124027883|ref|YP_001013203.1|	-	7.3e-12	45.1	0.4	1.9e-11	43.7	0.3	1.6	1	1	1	2	2	2	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|124027883|ref|YP_001013203.1|	-	0.0061	15.8	0.2	0.015	14.6	0.0	1.6	2	0	0	2	2	2	1	Phosphoribosyl	transferase
HisG_C	PF08029.6	gi|124027883|ref|YP_001013203.1|	-	0.072	13.0	0.3	0.16	11.9	0.1	1.7	2	0	0	2	2	2	0	HisG,	C-terminal	domain
TetR_C_6	PF13977.1	gi|124027884|ref|YP_001013204.1|	-	0.012	15.6	1.2	0.018	15.0	0.7	1.5	1	1	0	1	1	1	0	Bacterial	transcriptional	repressor
DUF998	PF06197.8	gi|124027885|ref|YP_001013205.1|	-	8.9e-22	77.2	20.5	1.1e-21	77.0	14.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
AtpR	PF12966.2	gi|124027885|ref|YP_001013205.1|	-	0.048	13.8	2.2	0.31	11.2	0.2	2.5	2	0	0	2	2	2	0	N-ATPase,	AtpR	subunit
FUSC-like	PF12805.2	gi|124027885|ref|YP_001013205.1|	-	1	8.2	7.5	1.5	7.7	5.2	1.2	1	0	0	1	1	1	0	FUSC-like	inner	membrane	protein	yccS
ThiS	PF02597.15	gi|124027886|ref|YP_001013206.1|	-	4.9e-11	42.9	0.0	6.4e-11	42.5	0.0	1.1	1	0	0	1	1	1	1	ThiS	family
Urm1	PF09138.6	gi|124027886|ref|YP_001013206.1|	-	0.023	14.7	0.0	0.03	14.4	0.0	1.2	1	0	0	1	1	1	0	Urm1	(Ubiquitin	related	modifier)
Nitroreductase	PF00881.19	gi|124027887|ref|YP_001013207.1|	-	7.2e-28	97.4	0.0	1.1e-27	96.8	0.0	1.3	1	0	0	1	1	1	1	Nitroreductase	family
SMP	PF04927.7	gi|124027887|ref|YP_001013207.1|	-	0.54	10.2	3.4	0.54	10.2	0.0	2.4	2	0	0	2	2	2	0	Seed	maturation	protein
CutA1	PF03091.10	gi|124027888|ref|YP_001013208.1|	-	1e-35	121.4	0.6	1.2e-35	121.2	0.4	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
PsiE	PF06146.7	gi|124027889|ref|YP_001013209.1|	-	0.015	15.5	7.5	0.015	15.5	5.2	1.8	2	0	0	2	2	2	0	Phosphate-starvation-inducible	E
LrgB	PF04172.11	gi|124027889|ref|YP_001013209.1|	-	0.022	13.9	3.6	0.02	14.0	1.9	1.3	1	1	0	1	1	1	0	LrgB-like	family
Fig1	PF12351.3	gi|124027889|ref|YP_001013209.1|	-	2.4	7.9	6.6	5.2	6.9	4.6	1.6	1	1	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
HTH_24	PF13412.1	gi|124027890|ref|YP_001013210.1|	-	0.21	10.9	1.2	0.47	9.8	0.0	2.3	2	1	1	3	3	3	0	Winged	helix-turn-helix	DNA-binding
LINES_C	PF14695.1	gi|124027890|ref|YP_001013210.1|	-	6	6.1	6.0	13	5.0	0.1	3.2	3	0	0	3	3	3	0	Lines	C-terminus
ABC_tran	PF00005.22	gi|124027891|ref|YP_001013211.1|	-	3.1e-24	85.8	0.1	4e-24	85.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124027891|ref|YP_001013211.1|	-	1.6e-13	51.2	0.0	5.3e-10	39.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|124027891|ref|YP_001013211.1|	-	1.2e-07	31.1	0.1	1.2e-06	27.9	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|124027891|ref|YP_001013211.1|	-	0.001	18.5	0.0	0.0022	17.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|124027891|ref|YP_001013211.1|	-	0.0024	17.0	0.0	0.0031	16.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|124027891|ref|YP_001013211.1|	-	0.0042	16.4	0.1	0.013	14.8	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|124027891|ref|YP_001013211.1|	-	0.0073	16.6	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|124027891|ref|YP_001013211.1|	-	0.01	15.9	0.1	0.022	14.8	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|124027891|ref|YP_001013211.1|	-	0.015	15.0	0.0	0.024	14.3	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
AAA	PF00004.24	gi|124027891|ref|YP_001013211.1|	-	0.022	14.9	0.3	0.091	12.9	0.2	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|124027891|ref|YP_001013211.1|	-	0.027	14.3	0.2	0.06	13.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|124027891|ref|YP_001013211.1|	-	0.11	12.4	0.0	0.25	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
Guanylate_kin	PF00625.16	gi|124027891|ref|YP_001013211.1|	-	0.12	11.8	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	Guanylate	kinase
AAA_13	PF13166.1	gi|124027891|ref|YP_001013211.1|	-	0.15	10.5	0.0	1.9	6.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
UPF0051	PF01458.12	gi|124027892|ref|YP_001013212.1|	-	5.2e-56	189.6	0.0	6.4e-56	189.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
AP_endonuc_2	PF01261.19	gi|124027894|ref|YP_001013214.1|	-	1.8e-08	33.9	0.5	2e-08	33.7	0.3	1.0	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
DUF849	PF05853.7	gi|124027894|ref|YP_001013214.1|	-	0.00034	19.6	0.1	0.00039	19.4	0.1	1.1	1	0	0	1	1	1	1	Prokaryotic	protein	of	unknown	function	(DUF849)
DeoC	PF01791.4	gi|124027894|ref|YP_001013214.1|	-	0.022	14.0	0.2	0.026	13.8	0.1	1.1	1	0	0	1	1	1	0	DeoC/LacD	family	aldolase
TIR_2	PF13676.1	gi|124027894|ref|YP_001013214.1|	-	0.12	12.5	0.1	0.14	12.3	0.0	1.2	1	0	0	1	1	1	0	TIR	domain
DUF1646	PF07854.7	gi|124027895|ref|YP_001013215.1|	-	1e-127	426.1	25.6	1.3e-127	425.7	17.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1646)
DUF2306	PF10067.4	gi|124027895|ref|YP_001013215.1|	-	0.066	13.3	0.3	0.066	13.3	0.2	3.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2306)
DUF2484	PF10658.4	gi|124027895|ref|YP_001013215.1|	-	0.45	10.6	8.7	0.072	13.2	1.2	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2484)
Usp	PF00582.21	gi|124027896|ref|YP_001013216.1|	-	8.2e-37	126.5	6.5	5.8e-19	68.6	0.4	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
B12-binding	PF02310.14	gi|124027896|ref|YP_001013216.1|	-	0.0091	15.8	0.2	0.18	11.6	0.0	2.4	2	1	0	2	2	2	1	B12	binding	domain
HGTP_anticodon	PF03129.15	gi|124027896|ref|YP_001013216.1|	-	0.021	14.7	0.2	0.73	9.8	0.0	2.2	2	0	0	2	2	2	0	Anticodon	binding	domain
AP_endonuc_2	PF01261.19	gi|124027896|ref|YP_001013216.1|	-	0.036	13.3	0.3	8.4	5.6	0.0	3.1	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
ABC_ATPase	PF09818.4	gi|124027897|ref|YP_001013217.1|	-	1.8e-152	508.0	0.0	2.2e-152	507.7	0.0	1.0	1	0	0	1	1	1	1	Predicted	ATPase	of	the	ABC	class
AAA_23	PF13476.1	gi|124027897|ref|YP_001013217.1|	-	0.00056	20.3	0.0	0.00078	19.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Cys_Met_Meta_PP	PF01053.15	gi|124027897|ref|YP_001013217.1|	-	0.1	10.8	0.2	0.15	10.2	0.1	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
NTP_transf_3	PF12804.2	gi|124027899|ref|YP_001013219.1|	-	2.4e-15	56.9	2.9	3.7e-15	56.3	2.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
AIRS_C	PF02769.17	gi|124027900|ref|YP_001013220.1|	-	2.8e-19	69.6	0.2	4.3e-19	69.0	0.2	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|124027900|ref|YP_001013220.1|	-	1e-14	54.5	0.0	2.2e-14	53.4	0.0	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
SOR_SNZ	PF01680.12	gi|124027901|ref|YP_001013221.1|	-	6.2e-84	280.7	0.1	8.1e-84	280.3	0.1	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|124027901|ref|YP_001013221.1|	-	2.3e-07	30.1	1.2	5.7e-06	25.5	0.1	2.4	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|124027901|ref|YP_001013221.1|	-	0.00029	20.1	3.8	0.00033	19.8	0.5	2.0	2	0	0	2	2	2	1	Nitronate	monooxygenase
Dus	PF01207.12	gi|124027901|ref|YP_001013221.1|	-	0.002	16.9	1.3	0.56	8.9	0.1	2.9	2	2	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NanE	PF04131.9	gi|124027901|ref|YP_001013221.1|	-	0.0091	14.9	0.1	0.37	9.7	0.0	2.5	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
IGPS	PF00218.16	gi|124027901|ref|YP_001013221.1|	-	0.0095	15.0	0.0	0.08	11.9	0.0	2.0	2	0	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.16	gi|124027901|ref|YP_001013221.1|	-	0.012	14.8	0.2	3.9	6.6	0.0	2.9	2	1	1	3	3	3	0	Histidine	biosynthesis	protein
Trp_syntA	PF00290.15	gi|124027901|ref|YP_001013221.1|	-	0.012	14.1	0.0	0.2	10.1	0.0	2.1	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
TIR-like	PF10137.4	gi|124027901|ref|YP_001013221.1|	-	0.075	12.6	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
OMPdecase	PF00215.19	gi|124027901|ref|YP_001013221.1|	-	0.14	11.5	0.5	1.3	8.3	0.0	2.3	2	1	1	3	3	3	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
SNO	PF01174.14	gi|124027902|ref|YP_001013222.1|	-	3.8e-52	176.6	0.0	4.5e-52	176.4	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|124027902|ref|YP_001013222.1|	-	7e-11	41.9	0.0	1.1e-10	41.3	0.0	1.5	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.12	gi|124027902|ref|YP_001013222.1|	-	9.8e-09	35.1	0.0	1.4e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.23	gi|124027902|ref|YP_001013222.1|	-	9.1e-06	25.2	0.1	5.3e-05	22.7	0.0	1.9	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DUF4066	PF13278.1	gi|124027902|ref|YP_001013222.1|	-	7.7e-05	22.0	0.0	0.00015	21.0	0.0	1.4	1	0	0	1	1	1	1	Putative	amidotransferase
Peptidase_C26	PF07722.8	gi|124027902|ref|YP_001013222.1|	-	0.0081	15.6	0.1	0.046	13.1	0.0	2.2	2	1	0	2	2	2	1	Peptidase	C26
DJ-1_PfpI	PF01965.19	gi|124027902|ref|YP_001013222.1|	-	0.012	15.0	0.0	0.016	14.6	0.0	1.3	1	0	0	1	1	1	0	DJ-1/PfpI	family
PALP	PF00291.20	gi|124027903|ref|YP_001013223.1|	-	2.9e-28	98.9	0.3	2.9e-27	95.7	0.2	2.1	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Ribosomal_L37e	PF01907.14	gi|124027903|ref|YP_001013223.1|	-	0.0013	18.4	0.0	0.0023	17.7	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L37e
PadR	PF03551.9	gi|124027903|ref|YP_001013223.1|	-	0.016	14.9	0.0	0.29	10.9	0.1	2.5	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
zf-ribbon_3	PF13248.1	gi|124027903|ref|YP_001013223.1|	-	0.07	12.3	1.5	0.14	11.3	1.0	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027903|ref|YP_001013223.1|	-	0.96	9.0	3.8	5.6	6.5	2.8	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Beta-lactamase	PF00144.19	gi|124027904|ref|YP_001013224.1|	-	1.7e-63	214.6	0.3	2.3e-63	214.2	0.2	1.1	1	0	0	1	1	1	1	Beta-lactamase
Pab87_oct	PF13969.1	gi|124027904|ref|YP_001013224.1|	-	9.6e-11	41.6	0.1	2.3e-10	40.4	0.1	1.6	1	0	0	1	1	1	1	Pab87	octamerisation	domain
Peptidase_S11	PF00768.15	gi|124027904|ref|YP_001013224.1|	-	0.089	12.0	0.0	0.15	11.2	0.0	1.3	1	0	0	1	1	1	0	D-alanyl-D-alanine	carboxypeptidase
NTP_transferase	PF00483.18	gi|124027905|ref|YP_001013225.1|	-	8.3e-36	123.5	0.0	1e-35	123.2	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|124027905|ref|YP_001013225.1|	-	3.9e-18	66.0	0.3	5.5e-18	65.5	0.2	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|124027905|ref|YP_001013225.1|	-	3.9e-08	32.4	0.1	0.87	9.1	0.0	4.3	4	0	0	4	4	4	3	Bacterial	transferase	hexapeptide	(six	repeats)
AA_kinase	PF00696.23	gi|124027906|ref|YP_001013226.1|	-	3.3e-33	115.2	0.0	4.1e-33	114.9	0.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
MgtE	PF01769.11	gi|124027907|ref|YP_001013227.1|	-	4.3e-26	91.7	10.7	7.1e-26	91.0	7.4	1.4	1	0	0	1	1	1	1	Divalent	cation	transporter
MgtE_N	PF03448.12	gi|124027907|ref|YP_001013227.1|	-	2.3e-21	76.0	0.1	9.1e-21	74.0	0.0	2.1	1	0	0	1	1	1	1	MgtE	intracellular	N	domain
CBS	PF00571.23	gi|124027907|ref|YP_001013227.1|	-	6.9e-20	70.5	1.8	3e-09	36.5	0.0	3.3	3	0	0	3	3	3	2	CBS	domain
ACT	PF01842.20	gi|124027907|ref|YP_001013227.1|	-	6.5e-08	31.9	0.4	1.5e-06	27.5	0.0	3.4	4	0	0	4	4	4	1	ACT	domain
FliG_M	PF14841.1	gi|124027907|ref|YP_001013227.1|	-	8e-05	22.5	7.0	0.0013	18.6	0.1	4.9	4	2	2	6	6	6	1	FliG	middle	domain
ACT_4	PF13291.1	gi|124027907|ref|YP_001013227.1|	-	0.0034	17.6	0.0	0.0092	16.3	0.0	1.7	1	0	0	1	1	1	1	ACT	domain
ACT_6	PF13740.1	gi|124027907|ref|YP_001013227.1|	-	0.0037	16.9	1.9	0.025	14.2	0.0	3.5	4	2	1	5	5	5	1	ACT	domain
Abi	PF02517.11	gi|124027907|ref|YP_001013227.1|	-	0.1	12.7	1.5	0.22	11.6	1.1	1.6	1	0	0	1	1	1	0	CAAX	protease	self-immunity
AP_endonuc_2	PF01261.19	gi|124027908|ref|YP_001013228.1|	-	2.6e-25	88.9	0.6	3.4e-25	88.6	0.4	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UvdE	PF03851.9	gi|124027908|ref|YP_001013228.1|	-	0.0012	17.9	0.1	0.0046	16.0	0.1	1.8	1	1	0	1	1	1	1	UV-endonuclease	UvdE
Amidohydro_2	PF04909.9	gi|124027908|ref|YP_001013228.1|	-	0.06	12.8	0.2	1.4	8.3	0.0	2.3	1	1	2	3	3	3	0	Amidohydrolase
DUF4434	PF14488.1	gi|124027908|ref|YP_001013228.1|	-	0.1	12.3	0.1	3.2	7.4	0.0	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4434)
Peptidase_M48	PF01435.13	gi|124027909|ref|YP_001013229.1|	-	0.00012	21.6	0.0	0.00016	21.2	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M48
DUF59	PF01883.14	gi|124027911|ref|YP_001013231.1|	-	3.6e-05	23.6	0.0	4.6e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
NusA_N	PF08529.6	gi|124027912|ref|YP_001013232.1|	-	0.0046	16.9	0.4	0.0083	16.1	0.3	1.5	1	0	0	1	1	1	1	NusA	N-terminal	domain
Aminotran_1_2	PF00155.16	gi|124027913|ref|YP_001013233.1|	-	3.3e-72	243.4	0.0	3.7e-72	243.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|124027913|ref|YP_001013233.1|	-	8.1e-14	51.4	0.0	5.3e-13	48.7	0.0	1.9	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|124027913|ref|YP_001013233.1|	-	2.5e-10	39.6	0.0	1.1e-09	37.5	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|124027913|ref|YP_001013233.1|	-	1.3e-07	31.1	0.0	2e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|124027913|ref|YP_001013233.1|	-	2.7e-05	22.6	0.0	3.9e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
OKR_DC_1	PF01276.15	gi|124027913|ref|YP_001013233.1|	-	0.0024	16.4	0.0	0.0041	15.7	0.0	1.3	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	major	domain
QueC	PF06508.8	gi|124027914|ref|YP_001013234.1|	-	9.6e-41	139.3	0.0	1.4e-40	138.8	0.0	1.2	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|124027914|ref|YP_001013234.1|	-	4.7e-05	22.9	0.0	7.4e-05	22.2	0.0	1.4	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
QueF	PF14489.1	gi|124027916|ref|YP_001013236.1|	-	2.8e-05	23.9	0.0	5e-05	23.1	0.0	1.4	2	0	0	2	2	2	1	QueF-like	protein
GTP_cyclohydroI	PF01227.17	gi|124027916|ref|YP_001013236.1|	-	0.002	17.4	0.0	0.0023	17.2	0.0	1.2	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
QueF_N	PF14819.1	gi|124027916|ref|YP_001013236.1|	-	0.081	13.0	0.0	0.1	12.7	0.0	1.2	1	0	0	1	1	1	0	Nitrile	reductase,	7-cyano-7-deazaguanine-reductase	N-term
Thg1	PF04446.7	gi|124027917|ref|YP_001013237.1|	-	1.5e-17	63.4	0.0	2.1e-17	62.9	0.0	1.3	1	0	0	1	1	1	1	tRNAHis	guanylyltransferase
NPH3	PF03000.9	gi|124027918|ref|YP_001013238.1|	-	0.074	12.5	0.1	0.085	12.3	0.0	1.1	1	0	0	1	1	1	0	NPH3	family
Molybdopterin	PF00384.17	gi|124027919|ref|YP_001013239.1|	-	1.5e-39	136.0	0.4	1.8e-34	119.2	0.0	3.1	2	1	0	2	2	2	2	Molybdopterin	oxidoreductase
Molybdop_Fe4S4	PF04879.11	gi|124027919|ref|YP_001013239.1|	-	5.7e-17	61.2	0.5	1.5e-16	59.8	0.4	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Molydop_binding	PF01568.16	gi|124027919|ref|YP_001013239.1|	-	1.6e-13	50.4	0.0	5.5e-13	48.6	0.0	1.9	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Antitoxin-MazE	PF04014.13	gi|124027919|ref|YP_001013239.1|	-	0.001	18.7	0.2	0.0091	15.7	0.0	2.4	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
TAT_signal	PF10518.4	gi|124027919|ref|YP_001013239.1|	-	9.8	6.4	9.2	0.22	11.6	1.2	2.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Fer4_11	PF13247.1	gi|124027920|ref|YP_001013240.1|	-	5.9e-30	103.0	12.0	5.9e-30	103.0	8.3	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124027920|ref|YP_001013240.1|	-	5.8e-17	61.8	23.6	6.6e-09	36.0	3.6	3.0	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124027920|ref|YP_001013240.1|	-	3.4e-16	59.2	24.5	8.6e-09	35.5	7.9	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124027920|ref|YP_001013240.1|	-	1.2e-11	44.2	27.3	8.5e-07	28.6	7.3	3.4	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124027920|ref|YP_001013240.1|	-	5e-10	38.5	47.5	1.7e-06	27.3	3.0	5.2	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|124027920|ref|YP_001013240.1|	-	3.1e-09	36.7	42.3	0.0011	19.3	2.1	4.3	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|124027920|ref|YP_001013240.1|	-	5.9e-09	35.3	37.0	0.00051	19.8	2.2	4.6	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124027920|ref|YP_001013240.1|	-	4.8e-08	32.7	29.8	1.5e-06	27.9	7.6	3.6	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124027920|ref|YP_001013240.1|	-	3e-07	30.0	43.2	0.004	16.9	2.4	4.8	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|124027920|ref|YP_001013240.1|	-	9.5e-07	28.7	24.2	2.4e-05	24.2	2.4	3.6	2	2	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124027920|ref|YP_001013240.1|	-	8.2e-06	26.4	28.1	0.29	11.8	1.9	4.8	3	1	1	4	4	4	4	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|124027920|ref|YP_001013240.1|	-	1.4e-05	25.0	36.2	0.006	16.8	2.9	4.7	5	0	0	5	5	5	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|124027920|ref|YP_001013240.1|	-	0.00089	19.6	23.1	0.024	15.0	1.8	4.5	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124027920|ref|YP_001013240.1|	-	0.0028	17.9	31.8	0.48	10.8	2.0	4.5	2	2	2	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124027920|ref|YP_001013240.1|	-	0.03	14.8	26.2	0.21	12.1	0.2	3.9	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_20	PF14691.1	gi|124027920|ref|YP_001013240.1|	-	7.5	6.2	25.6	0.54	9.9	3.1	3.6	2	1	2	4	4	4	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Cytochrom_B_N	PF00033.14	gi|124027921|ref|YP_001013241.1|	-	2.1e-15	56.5	15.6	1.8e-14	53.5	10.9	2.0	1	1	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
Ni_hydr_CYTB	PF01292.15	gi|124027921|ref|YP_001013241.1|	-	1.3e-14	53.9	14.0	2e-14	53.4	9.7	1.3	1	0	0	1	1	1	1	Prokaryotic	cytochrome	b561
DUF4405	PF14358.1	gi|124027921|ref|YP_001013241.1|	-	1.5e-05	24.9	8.6	1.5e-05	24.9	6.0	3.0	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4405)
DUF3392	PF11872.3	gi|124027921|ref|YP_001013241.1|	-	0.13	12.2	3.0	0.16	11.9	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3392)
FdhD-NarQ	PF02634.10	gi|124027922|ref|YP_001013242.1|	-	3.3e-13	49.6	1.2	8.6e-10	38.4	0.7	2.1	1	1	0	2	2	2	2	FdhD/NarQ	family
FdhE	PF04216.7	gi|124027923|ref|YP_001013243.1|	-	2.6e-26	93.0	0.2	4.1e-26	92.3	0.1	1.3	1	1	0	1	1	1	1	Protein	involved	in	formate	dehydrogenase	formation
Zn_Tnp_IS1595	PF12760.2	gi|124027923|ref|YP_001013243.1|	-	0.00014	21.6	10.4	0.0012	18.6	0.7	2.5	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
zf-HIT	PF04438.11	gi|124027923|ref|YP_001013243.1|	-	0.037	13.6	11.5	0.037	13.6	0.6	3.1	3	0	0	3	3	3	0	HIT	zinc	finger
zf-ribbon_3	PF13248.1	gi|124027923|ref|YP_001013243.1|	-	0.091	11.9	6.6	1.6	8.0	0.1	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|124027923|ref|YP_001013243.1|	-	0.12	11.9	5.5	0.96	9.1	0.5	2.8	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|124027923|ref|YP_001013243.1|	-	0.13	12.1	8.4	0.45	10.3	5.9	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.1	gi|124027923|ref|YP_001013243.1|	-	0.2	11.9	6.9	6.3	7.1	4.8	2.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF35_N	PF12172.3	gi|124027923|ref|YP_001013243.1|	-	0.22	11.4	13.2	0.24	11.3	5.3	2.7	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C3HC4_3	PF13920.1	gi|124027923|ref|YP_001013243.1|	-	0.33	10.6	4.2	4.7	6.9	3.5	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Rubredoxin	PF00301.15	gi|124027923|ref|YP_001013243.1|	-	0.61	9.9	15.8	15	5.5	0.8	4.3	4	0	0	4	4	4	0	Rubredoxin
DUF2387	PF09526.5	gi|124027923|ref|YP_001013243.1|	-	0.87	9.5	5.0	0.98	9.3	0.1	2.4	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
C1_1	PF00130.17	gi|124027923|ref|YP_001013243.1|	-	2.2	8.0	7.9	0.55	10.0	1.4	2.2	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-TFIIB	PF13453.1	gi|124027923|ref|YP_001013243.1|	-	4.5	6.5	10.9	3.2	7.0	1.0	2.8	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
HypA	PF01155.14	gi|124027923|ref|YP_001013243.1|	-	6.4	6.5	6.4	1.2	8.8	0.7	2.4	2	1	1	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
Beta_propel	PF09826.4	gi|124027924|ref|YP_001013244.1|	-	5.7e-09	34.8	0.0	5.7e-09	34.8	0.0	1.1	1	0	0	1	1	1	1	Beta	propeller	domain
MNSV_P7B	PF06692.6	gi|124027924|ref|YP_001013244.1|	-	0.061	13.1	0.0	0.16	11.7	0.0	1.7	2	0	0	2	2	2	0	Melon	necrotic	spot	virus	P7B	protein
Beta_propel	PF09826.4	gi|124027925|ref|YP_001013245.1|	-	3.1e-57	194.1	0.0	1.2e-56	192.1	0.0	1.9	1	1	0	1	1	1	1	Beta	propeller	domain
PQQ_2	PF13360.1	gi|124027925|ref|YP_001013245.1|	-	0.082	12.3	0.0	0.28	10.6	0.0	1.9	1	1	0	1	1	1	0	PQQ-like	domain
MOZART2	PF12926.2	gi|124027925|ref|YP_001013245.1|	-	0.12	11.9	0.0	0.39	10.3	0.0	1.8	1	0	0	1	1	1	0	Mitotic-spindle	organizing	gamma-tubulin	ring	associated
Beta-lactamase2	PF13354.1	gi|124027927|ref|YP_001013247.1|	-	0.029	13.8	0.4	0.029	13.8	0.3	2.8	3	1	0	3	3	3	0	Beta-lactamase	enzyme	family
Synaptobrevin	PF00957.16	gi|124027927|ref|YP_001013247.1|	-	0.1	12.1	1.7	10	5.7	0.0	3.7	3	0	0	3	3	3	0	Synaptobrevin
DUF1771	PF08590.5	gi|124027927|ref|YP_001013247.1|	-	0.25	11.3	12.2	2.9	7.9	0.3	5.0	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1771)
HTH_24	PF13412.1	gi|124027928|ref|YP_001013248.1|	-	5.4e-12	44.8	0.0	1.7e-11	43.3	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|124027928|ref|YP_001013248.1|	-	2.3e-07	30.3	0.5	4.6e-07	29.3	0.3	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|124027928|ref|YP_001013248.1|	-	1.8e-06	27.5	0.4	2.1e-05	24.1	0.1	2.5	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|124027928|ref|YP_001013248.1|	-	1.4e-05	24.5	0.5	2.8e-05	23.5	0.3	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|124027928|ref|YP_001013248.1|	-	4.6e-05	23.1	0.1	0.00011	21.9	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|124027928|ref|YP_001013248.1|	-	0.0011	18.6	0.0	0.0028	17.3	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|124027928|ref|YP_001013248.1|	-	0.0014	18.9	0.3	0.03	14.6	0.1	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|124027928|ref|YP_001013248.1|	-	0.0017	17.9	0.1	0.0035	16.9	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|124027928|ref|YP_001013248.1|	-	0.0027	17.3	0.1	0.03	14.0	0.0	2.5	2	0	0	2	2	2	1	MarR	family
RskA	PF10099.4	gi|124027928|ref|YP_001013248.1|	-	0.0031	17.2	11.5	0.0093	15.7	1.6	2.4	2	0	0	2	2	2	2	Anti-sigma-K	factor	rskA
HTH_5	PF01022.15	gi|124027928|ref|YP_001013248.1|	-	0.0091	15.6	0.0	0.019	14.6	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.1	gi|124027928|ref|YP_001013248.1|	-	0.088	12.8	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_psq	PF05225.11	gi|124027928|ref|YP_001013248.1|	-	0.094	12.2	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
DUF4366	PF14283.1	gi|124027928|ref|YP_001013248.1|	-	0.097	12.0	1.1	0.17	11.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
DUF3995	PF13160.1	gi|124027928|ref|YP_001013248.1|	-	8	6.5	10.3	1	9.4	1.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3995)
Pyr_redox_2	PF07992.9	gi|124027929|ref|YP_001013249.1|	-	3.1e-34	118.6	9.2	1.6e-21	77.1	0.7	4.1	1	1	2	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|124027929|ref|YP_001013249.1|	-	1.3e-24	86.3	0.2	2.4e-24	85.4	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|124027929|ref|YP_001013249.1|	-	1.3e-22	79.9	4.1	1.6e-19	70.0	0.2	2.8	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|124027929|ref|YP_001013249.1|	-	2.2e-11	43.2	15.2	6.9e-06	25.1	0.3	3.6	3	1	0	3	3	3	3	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|124027929|ref|YP_001013249.1|	-	3.5e-11	43.5	0.2	9.9e-06	25.7	0.1	2.6	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|124027929|ref|YP_001013249.1|	-	1.9e-09	36.8	14.6	0.00015	20.8	1.6	3.7	2	2	2	4	4	4	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.9	gi|124027929|ref|YP_001013249.1|	-	1.4e-08	33.6	5.2	0.047	12.1	0.0	3.5	4	0	0	4	4	4	3	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|124027929|ref|YP_001013249.1|	-	1.8e-08	33.8	8.3	2.7e-06	26.7	0.4	2.7	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|124027929|ref|YP_001013249.1|	-	1.3e-06	27.5	11.5	2.5e-05	23.2	1.0	3.2	2	1	1	3	3	3	2	FAD	binding	domain
K_oxygenase	PF13434.1	gi|124027929|ref|YP_001013249.1|	-	1.1e-05	24.6	0.0	9.9e-05	21.3	0.0	2.0	1	1	1	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.14	gi|124027929|ref|YP_001013249.1|	-	4.7e-05	22.5	3.9	0.0024	17.0	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Thi4	PF01946.12	gi|124027929|ref|YP_001013249.1|	-	5.3e-05	22.4	1.0	0.078	12.0	0.1	2.6	2	0	0	2	2	2	2	Thi4	family
3HCDH_N	PF02737.13	gi|124027929|ref|YP_001013249.1|	-	6.2e-05	22.7	1.7	0.0073	15.9	0.1	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|124027929|ref|YP_001013249.1|	-	0.00029	20.7	5.5	0.15	12.1	0.7	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|124027929|ref|YP_001013249.1|	-	0.00051	19.8	0.1	0.00051	19.8	0.1	3.0	3	1	1	4	4	4	1	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|124027929|ref|YP_001013249.1|	-	0.00093	18.8	3.7	0.0034	16.9	0.0	2.7	3	0	0	3	3	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Amino_oxidase	PF01593.19	gi|124027929|ref|YP_001013249.1|	-	0.0044	16.1	0.2	0.0082	15.2	0.1	1.3	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
Lycopene_cycl	PF05834.7	gi|124027929|ref|YP_001013249.1|	-	0.0063	15.4	6.9	1.3	7.8	0.2	3.2	2	1	1	3	3	3	2	Lycopene	cyclase	protein
NAD_binding_7	PF13241.1	gi|124027929|ref|YP_001013249.1|	-	0.0085	16.3	0.6	0.12	12.5	0.0	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
XdhC_C	PF13478.1	gi|124027929|ref|YP_001013249.1|	-	0.064	13.5	0.1	19	5.5	0.0	2.6	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Trp_halogenase	PF04820.9	gi|124027929|ref|YP_001013249.1|	-	0.14	10.7	3.5	0.61	8.6	0.0	2.7	3	0	0	3	3	3	0	Tryptophan	halogenase
DUF77	PF01910.12	gi|124027931|ref|YP_001013251.1|	-	6e-23	80.3	0.3	7.3e-23	80.0	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
EIIBC-GUT_N	PF03612.9	gi|124027931|ref|YP_001013251.1|	-	0.023	14.3	0.0	0.031	13.9	0.0	1.2	1	0	0	1	1	1	0	Sorbitol	phosphotransferase	enzyme	II	N-terminus
NMD3	PF04981.8	gi|124027932|ref|YP_001013252.1|	-	4.7e-47	160.0	0.0	6.2e-47	159.6	0.0	1.2	1	0	0	1	1	1	1	NMD3	family
DZR	PF12773.2	gi|124027932|ref|YP_001013252.1|	-	0.0038	17.0	0.7	0.14	11.9	0.1	2.4	2	0	0	2	2	2	1	Double	zinc	ribbon
UPF0547	PF10571.4	gi|124027932|ref|YP_001013252.1|	-	0.048	13.3	3.1	0.093	12.4	0.1	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF4428	PF14471.1	gi|124027932|ref|YP_001013252.1|	-	0.8	9.4	3.6	8.5	6.2	0.2	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4428)
zf-RING_3	PF14369.1	gi|124027932|ref|YP_001013252.1|	-	1.9	8.5	6.5	22	5.1	0.0	3.3	3	0	0	3	3	3	0	zinc-finger
Amidohydro_3	PF07969.6	gi|124027933|ref|YP_001013253.1|	-	6.1e-87	292.4	1.5	7e-87	292.2	1.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.15	gi|124027933|ref|YP_001013253.1|	-	8.7e-10	38.7	1.3	4.4e-05	23.2	0.2	2.8	2	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|124027933|ref|YP_001013253.1|	-	0.0005	20.1	11.7	0.036	14.1	8.1	2.9	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|124027933|ref|YP_001013253.1|	-	0.00093	18.9	0.0	0.002	17.8	0.0	1.6	1	0	0	1	1	1	1	Amidohydrolase
MR_MLE_C	PF13378.1	gi|124027933|ref|YP_001013253.1|	-	0.068	13.1	1.0	1.7	8.6	0.4	2.5	2	0	0	2	2	2	0	Enolase	C-terminal	domain-like
CitG	PF01874.11	gi|124027934|ref|YP_001013254.1|	-	4.8e-16	58.7	0.1	3.3e-15	56.0	0.0	1.9	1	1	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
DEAD	PF00270.24	gi|124027936|ref|YP_001013256.1|	-	6.5e-18	64.7	0.0	1.4e-17	63.7	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|124027936|ref|YP_001013256.1|	-	1.2e-09	37.8	0.3	2.8e-09	36.6	0.2	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|124027936|ref|YP_001013256.1|	-	8.9e-06	25.6	0.0	1.5e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|124027936|ref|YP_001013256.1|	-	0.0023	17.6	0.8	0.012	15.3	0.1	2.5	2	0	0	2	2	2	1	Part	of	AAA	domain
DUF4350	PF14258.1	gi|124027936|ref|YP_001013256.1|	-	0.0035	17.5	0.0	0.76	10.0	0.0	4.3	3	1	0	3	3	3	1	Domain	of	unknown	function	(DUF4350)
AAA_30	PF13604.1	gi|124027936|ref|YP_001013256.1|	-	0.056	13.0	0.0	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|124027936|ref|YP_001013256.1|	-	0.1	11.9	0.0	0.32	10.3	0.0	1.8	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Holin_BlyA	PF05102.7	gi|124027937|ref|YP_001013257.1|	-	0.054	13.2	0.9	0.096	12.4	0.1	1.7	2	0	0	2	2	2	0	holin,	BlyA	family
ATP_bind_4	PF01902.12	gi|124027938|ref|YP_001013258.1|	-	1.4e-52	178.2	0.0	1.6e-52	178.0	0.0	1.0	1	0	0	1	1	1	1	ATP-binding	region
QueC	PF06508.8	gi|124027938|ref|YP_001013258.1|	-	0.0016	17.7	0.0	0.026	13.8	0.0	2.2	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
AAA_33	PF13671.1	gi|124027938|ref|YP_001013258.1|	-	0.076	12.8	0.0	9.8	6.0	0.1	2.2	1	1	1	2	2	2	0	AAA	domain
B5	PF03484.10	gi|124027938|ref|YP_001013258.1|	-	0.13	12.1	0.0	20	5.0	0.0	2.5	1	1	0	2	2	2	0	tRNA	synthetase	B5	domain
PNP_UDP_1	PF01048.15	gi|124027941|ref|YP_001013261.1|	-	2.7e-27	95.2	0.0	3.3e-27	94.9	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
AdoMet_dc	PF02675.10	gi|124027942|ref|YP_001013262.1|	-	1e-33	115.3	0.1	1.2e-33	115.1	0.1	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
Amidohydro_5	PF13594.1	gi|124027943|ref|YP_001013263.1|	-	0.024	14.4	0.0	0.081	12.7	0.0	1.9	1	0	0	1	1	1	0	Amidohydrolase
SurE	PF01975.12	gi|124027944|ref|YP_001013264.1|	-	2.2e-53	180.5	0.0	3.4e-53	179.8	0.0	1.3	1	0	0	1	1	1	1	Survival	protein	SurE
DUF1152	PF06626.7	gi|124027945|ref|YP_001013265.1|	-	2.1e-111	371.7	5.9	2.6e-111	371.5	4.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1152)
Glyco_transf_28	PF03033.15	gi|124027945|ref|YP_001013265.1|	-	0.0092	15.7	0.5	0.019	14.7	0.4	1.5	1	0	0	1	1	1	1	Glycosyltransferase	family	28	N-terminal	domain
PGM_PMM_I	PF02878.11	gi|124027946|ref|YP_001013266.1|	-	1e-40	138.4	0.0	2.1e-40	137.3	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|124027946|ref|YP_001013266.1|	-	7.6e-20	71.1	0.0	1.7e-19	70.0	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|124027946|ref|YP_001013266.1|	-	9.9e-20	70.6	0.0	2.6e-19	69.3	0.0	1.8	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|124027946|ref|YP_001013266.1|	-	1.2e-14	54.0	0.2	2.8e-14	52.8	0.1	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Trm112p	PF03966.11	gi|124027947|ref|YP_001013267.1|	-	5.6e-12	45.8	5.9	1.4e-11	44.5	4.1	1.7	1	1	0	1	1	1	1	Trm112p-like	protein
zf-ribbon_3	PF13248.1	gi|124027947|ref|YP_001013267.1|	-	0.01	15.0	4.7	0.019	14.1	1.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|124027947|ref|YP_001013267.1|	-	0.04	14.1	0.0	0.11	12.7	0.0	1.9	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124027947|ref|YP_001013267.1|	-	0.11	12.0	5.5	0.75	9.3	0.1	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|124027947|ref|YP_001013267.1|	-	0.11	12.3	4.4	0.28	11.0	1.8	2.1	2	0	0	2	2	2	0	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|124027947|ref|YP_001013267.1|	-	0.13	11.9	1.8	1.1	8.9	0.4	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Auto_anti-p27	PF06677.7	gi|124027947|ref|YP_001013267.1|	-	3.1	7.6	5.4	6.6	6.5	1.4	2.4	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
eIF-1a	PF01176.14	gi|124027948|ref|YP_001013268.1|	-	0.0081	15.5	0.1	0.0093	15.3	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Antitoxin-MazE	PF04014.13	gi|124027948|ref|YP_001013268.1|	-	0.011	15.4	0.2	0.016	14.8	0.1	1.5	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE
DUF1905	PF08922.6	gi|124027948|ref|YP_001013268.1|	-	0.044	13.3	0.0	0.06	12.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
UPF0150	PF03681.10	gi|124027948|ref|YP_001013268.1|	-	0.089	12.4	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0150)
HSP20	PF00011.16	gi|124027949|ref|YP_001013269.1|	-	1.8e-05	24.5	0.0	2.3e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
Cep57_CLD_2	PF14197.1	gi|124027949|ref|YP_001013269.1|	-	0.031	14.2	0.3	0.058	13.3	0.2	1.4	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
DUF4423	PF14394.1	gi|124027949|ref|YP_001013269.1|	-	0.059	12.9	0.1	0.15	11.5	0.1	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
PAC2	PF09754.4	gi|124027950|ref|YP_001013270.1|	-	8.1e-34	117.3	0.1	9.6e-34	117.1	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
PIG-F	PF06699.6	gi|124027951|ref|YP_001013271.1|	-	0.026	14.4	0.1	0.03	14.2	0.1	1.1	1	0	0	1	1	1	0	GPI	biosynthesis	protein	family	Pig-F
DUF2760	PF10816.3	gi|124027951|ref|YP_001013271.1|	-	0.063	12.7	0.0	6.3	6.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2760)
DUF424	PF04242.8	gi|124027953|ref|YP_001013273.1|	-	1.1e-30	105.5	0.0	1.2e-30	105.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
PK_C	PF02887.11	gi|124027953|ref|YP_001013273.1|	-	0.045	13.3	0.0	0.064	12.8	0.0	1.4	1	1	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
eIF-5_eIF-2B	PF01873.12	gi|124027954|ref|YP_001013274.1|	-	2.7e-34	117.5	0.0	3.1e-34	117.3	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
Lar_restr_allev	PF14354.1	gi|124027954|ref|YP_001013274.1|	-	0.0021	18.3	0.8	0.0035	17.6	0.6	1.3	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|124027954|ref|YP_001013274.1|	-	0.019	14.1	1.4	1.3	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124027954|ref|YP_001013274.1|	-	0.032	13.7	2.9	0.14	11.6	2.0	2.0	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF164	PF02591.10	gi|124027954|ref|YP_001013274.1|	-	0.037	13.8	0.7	1.2	9.0	0.0	2.9	3	1	0	3	3	3	0	Putative	zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|124027954|ref|YP_001013274.1|	-	0.061	13.0	0.8	1.6	8.4	0.1	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
PhnA_Zn_Ribbon	PF08274.7	gi|124027954|ref|YP_001013274.1|	-	0.077	12.7	1.1	13	5.6	0.2	2.4	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.7	gi|124027954|ref|YP_001013274.1|	-	0.081	12.2	1.0	0.24	10.7	0.2	2.2	3	0	0	3	3	3	0	TFIIB	zinc-binding
GATA	PF00320.22	gi|124027954|ref|YP_001013274.1|	-	0.17	11.2	1.8	0.29	10.5	1.2	1.4	1	0	0	1	1	1	0	GATA	zinc	finger
zinc_ribbon_2	PF13240.1	gi|124027954|ref|YP_001013274.1|	-	0.19	11.2	0.8	6.2	6.4	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|124027954|ref|YP_001013274.1|	-	0.29	10.9	1.4	0.89	9.4	1.0	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Prenyltransf	PF01255.14	gi|124027955|ref|YP_001013275.1|	-	6.6e-64	215.0	0.0	7.6e-64	214.8	0.0	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
DUF373	PF04123.8	gi|124027956|ref|YP_001013276.1|	-	1.3e-89	300.6	11.7	1.6e-89	300.2	8.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
FeoB_C	PF07664.7	gi|124027956|ref|YP_001013276.1|	-	0.0036	16.7	1.0	1.4	8.3	0.1	3.0	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B	C	terminus
Receptor_IA-2	PF11548.3	gi|124027956|ref|YP_001013276.1|	-	0.02	14.7	0.0	0.047	13.5	0.0	1.6	1	0	0	1	1	1	0	Protein-tyrosine	phosphatase	receptor	IA-2
DUF2100	PF09873.4	gi|124027956|ref|YP_001013276.1|	-	0.12	11.7	0.0	0.21	11.0	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2100)
Seryl_tRNA_N	PF02403.17	gi|124027957|ref|YP_001013277.1|	-	9.2e-07	28.8	37.2	0.0029	17.6	4.9	4.8	2	1	2	5	5	5	3	Seryl-tRNA	synthetase	N-terminal	domain
DUF948	PF06103.6	gi|124027957|ref|YP_001013277.1|	-	8.8e-06	25.5	7.9	0.0023	17.7	0.1	3.8	1	1	3	4	4	4	1	Bacterial	protein	of	unknown	function	(DUF948)
DUF1192	PF06698.6	gi|124027957|ref|YP_001013277.1|	-	1.2e-05	25.0	14.9	6.5e-05	22.6	1.5	7.2	5	2	1	6	6	6	2	Protein	of	unknown	function	(DUF1192)
Reo_sigmaC	PF04582.7	gi|124027957|ref|YP_001013277.1|	-	5.2e-05	22.5	5.0	0.0042	16.3	0.6	2.4	1	1	0	2	2	2	1	Reovirus	sigma	C	capsid	protein
Spc7	PF08317.6	gi|124027957|ref|YP_001013277.1|	-	0.00012	20.8	37.2	0.0022	16.7	11.1	2.4	1	1	1	2	2	2	2	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.7	gi|124027957|ref|YP_001013277.1|	-	0.0002	21.1	10.4	0.00087	19.1	0.4	3.3	1	1	2	3	3	3	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
IncA	PF04156.9	gi|124027957|ref|YP_001013277.1|	-	0.00021	20.9	57.1	0.011	15.3	12.7	3.3	1	1	2	3	3	3	1	IncA	protein
Prefoldin	PF02996.12	gi|124027957|ref|YP_001013277.1|	-	0.00046	19.8	0.4	0.00046	19.8	0.3	5.5	4	2	0	6	6	5	1	Prefoldin	subunit
IFT57	PF10498.4	gi|124027957|ref|YP_001013277.1|	-	0.00051	18.8	25.5	0.0033	16.2	4.7	2.5	1	1	1	2	2	2	2	Intra-flagellar	transport	protein	57
DUF3584	PF12128.3	gi|124027957|ref|YP_001013277.1|	-	0.00064	17.2	34.0	0.00083	16.8	23.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
AAA_13	PF13166.1	gi|124027957|ref|YP_001013277.1|	-	0.00085	17.9	25.1	0.0036	15.8	12.1	2.1	1	1	0	1	1	1	1	AAA	domain
NPV_P10	PF05531.7	gi|124027957|ref|YP_001013277.1|	-	0.001	19.2	8.2	0.0065	16.6	0.7	4.1	2	2	1	3	3	2	1	Nucleopolyhedrovirus	P10	protein
FlaC_arch	PF05377.6	gi|124027957|ref|YP_001013277.1|	-	0.0011	18.7	3.2	0.016	15.1	0.3	5.0	2	2	3	5	5	5	2	Flagella	accessory	protein	C	(FlaC)
DUF972	PF06156.8	gi|124027957|ref|YP_001013277.1|	-	0.0019	18.5	30.4	0.96	9.8	2.6	4.5	2	2	1	3	3	3	2	Protein	of	unknown	function	(DUF972)
Gp58	PF07902.6	gi|124027957|ref|YP_001013277.1|	-	0.002	16.4	0.9	0.002	16.4	0.6	1.6	1	1	0	2	2	2	1	gp58-like	protein
Syntaxin	PF00804.20	gi|124027957|ref|YP_001013277.1|	-	0.0022	18.1	7.6	0.0022	18.1	5.3	4.2	1	1	2	3	3	3	1	Syntaxin
TBPIP	PF07106.8	gi|124027957|ref|YP_001013277.1|	-	0.0023	17.5	36.4	0.028	13.9	4.0	3.9	1	1	4	5	5	5	3	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
AKNA	PF12443.3	gi|124027957|ref|YP_001013277.1|	-	0.0026	17.7	18.9	0.0044	17.0	0.6	4.0	1	1	3	4	4	4	1	AT-hook-containing	transcription	factor
GAS	PF13851.1	gi|124027957|ref|YP_001013277.1|	-	0.0033	16.6	40.0	0.01	15.0	11.0	3.1	1	1	1	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
TMF_DNA_bd	PF12329.3	gi|124027957|ref|YP_001013277.1|	-	0.0039	16.9	3.8	0.0039	16.9	2.6	5.9	1	1	5	6	6	4	3	TATA	element	modulatory	factor	1	DNA	binding
APG6	PF04111.7	gi|124027957|ref|YP_001013277.1|	-	0.0058	15.7	37.3	0.012	14.7	8.3	3.1	1	1	2	3	3	3	2	Autophagy	protein	Apg6
Snf7	PF03357.16	gi|124027957|ref|YP_001013277.1|	-	0.0058	16.0	5.4	0.0058	16.0	3.7	4.4	1	1	3	4	4	4	1	Snf7
DUF904	PF06005.7	gi|124027957|ref|YP_001013277.1|	-	0.008	16.4	50.7	0.023	14.9	1.1	5.7	2	2	3	5	5	3	3	Protein	of	unknown	function	(DUF904)
Syntaxin_2	PF14523.1	gi|124027957|ref|YP_001013277.1|	-	0.0091	16.0	5.0	0.0091	16.0	3.4	3.8	1	1	1	3	3	3	1	Syntaxin-like	protein
Spectrin	PF00435.16	gi|124027957|ref|YP_001013277.1|	-	0.011	16.0	29.5	0.017	15.3	1.3	3.5	2	1	0	3	3	3	0	Spectrin	repeat
ATG16	PF08614.6	gi|124027957|ref|YP_001013277.1|	-	0.015	15.1	42.4	0.059	13.1	9.9	3.2	1	1	2	3	3	2	0	Autophagy	protein	16	(ATG16)
FliD_C	PF07195.7	gi|124027957|ref|YP_001013277.1|	-	0.019	14.3	7.3	0.045	13.0	2.4	2.8	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Laminin_I	PF06008.9	gi|124027957|ref|YP_001013277.1|	-	0.019	14.2	31.9	0.22	10.7	8.7	2.3	1	1	1	2	2	2	0	Laminin	Domain	I
COG5	PF10392.4	gi|124027957|ref|YP_001013277.1|	-	0.02	14.8	2.1	0.02	14.8	1.5	4.2	1	1	2	4	4	4	0	Golgi	transport	complex	subunit	5
LPP	PF04728.8	gi|124027957|ref|YP_001013277.1|	-	0.026	14.3	0.0	0.21	11.4	0.0	2.5	2	0	0	2	2	1	0	Lipoprotein	leucine-zipper
Scaffolding_pro	PF11418.3	gi|124027957|ref|YP_001013277.1|	-	0.026	14.8	3.6	1.2	9.4	0.0	3.3	2	1	1	3	3	2	0	Phi29	scaffolding	protein
DUF2935	PF11155.3	gi|124027957|ref|YP_001013277.1|	-	0.027	14.5	8.3	0.9	9.6	0.5	3.2	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
FliJ	PF02050.11	gi|124027957|ref|YP_001013277.1|	-	0.027	14.5	3.0	0.027	14.5	2.1	3.6	1	1	1	3	3	3	0	Flagellar	FliJ	protein
Hemagglutinin	PF00509.13	gi|124027957|ref|YP_001013277.1|	-	0.029	12.5	0.5	0.053	11.6	0.3	1.4	1	0	0	1	1	1	0	Haemagglutinin
DivIC	PF04977.10	gi|124027957|ref|YP_001013277.1|	-	0.033	13.6	42.8	0.024	14.0	3.1	6.1	1	1	5	6	6	6	0	Septum	formation	initiator
MCPsignal	PF00015.16	gi|124027957|ref|YP_001013277.1|	-	0.04	13.4	12.8	26	4.2	8.9	2.8	1	1	0	1	1	1	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
BLOC1_2	PF10046.4	gi|124027957|ref|YP_001013277.1|	-	0.043	13.9	21.5	0.43	10.7	1.3	5.0	1	1	5	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Matrilin_ccoil	PF10393.4	gi|124027957|ref|YP_001013277.1|	-	0.047	13.0	2.4	3.4	7.1	0.0	3.5	2	0	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
HsbA	PF12296.3	gi|124027957|ref|YP_001013277.1|	-	0.049	13.4	0.7	17	5.2	0.0	3.4	3	1	0	3	3	3	0	Hydrophobic	surface	binding	protein	A
DUF869	PF05911.6	gi|124027957|ref|YP_001013277.1|	-	0.068	11.4	29.6	0.069	11.3	4.3	2.5	2	1	1	3	3	3	0	Plant	protein	of	unknown	function	(DUF869)
EzrA	PF06160.7	gi|124027957|ref|YP_001013277.1|	-	0.073	11.2	28.4	0.0084	14.3	1.8	2.8	1	1	2	3	3	3	0	Septation	ring	formation	regulator,	EzrA
DUF1664	PF07889.7	gi|124027957|ref|YP_001013277.1|	-	0.078	12.7	22.6	0.7	9.6	1.1	4.2	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
Prominin	PF05478.6	gi|124027957|ref|YP_001013277.1|	-	0.088	10.3	14.3	0.14	9.6	1.5	2.2	1	1	1	2	2	2	0	Prominin
Lipoprotein_7	PF01540.11	gi|124027957|ref|YP_001013277.1|	-	0.14	11.1	11.0	1.2	8.1	7.4	2.3	1	1	0	1	1	1	0	Adhesin	lipoprotein
DUF812	PF05667.6	gi|124027957|ref|YP_001013277.1|	-	0.15	10.5	36.7	0.024	13.1	10.5	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF812)
TMF_TATA_bd	PF12325.3	gi|124027957|ref|YP_001013277.1|	-	0.15	11.7	51.2	0.042	13.5	7.0	4.2	1	1	3	4	4	4	0	TATA	element	modulatory	factor	1	TATA	binding
Bacillus_HBL	PF05791.6	gi|124027957|ref|YP_001013277.1|	-	0.16	11.3	17.9	2	7.7	0.7	4.1	1	1	2	4	4	4	0	Bacillus	haemolytic	enterotoxin	(HBL)
Herpes_U30	PF04523.8	gi|124027957|ref|YP_001013277.1|	-	0.17	9.3	16.1	0.067	10.6	3.4	2.2	1	1	1	2	2	2	0	Herpes	virus	tegument	protein	U30
ERM	PF00769.14	gi|124027957|ref|YP_001013277.1|	-	0.17	11.3	43.0	6.9	6.1	18.9	2.6	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
Laminin_II	PF06009.7	gi|124027957|ref|YP_001013277.1|	-	0.27	11.0	22.0	0.47	10.2	3.6	3.0	1	1	2	3	3	3	0	Laminin	Domain	II
CCDC155	PF14662.1	gi|124027957|ref|YP_001013277.1|	-	0.28	10.7	47.9	0.51	9.9	12.4	3.2	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
Snapin_Pallidin	PF14712.1	gi|124027957|ref|YP_001013277.1|	-	0.3	11.4	36.3	0.24	11.7	3.4	5.0	1	1	2	4	4	4	0	Snapin/Pallidin
Rab5-bind	PF09311.6	gi|124027957|ref|YP_001013277.1|	-	0.34	10.7	50.1	0.091	12.6	15.4	3.1	1	1	2	3	3	3	0	Rabaptin-like	protein
Vps51	PF08700.6	gi|124027957|ref|YP_001013277.1|	-	0.35	10.7	22.1	0.91	9.4	1.5	5.5	2	2	1	3	3	3	0	Vps51/Vps67
Mod_r	PF07200.8	gi|124027957|ref|YP_001013277.1|	-	0.37	10.6	33.2	0.29	11.0	6.2	3.3	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
Mnd1	PF03962.10	gi|124027957|ref|YP_001013277.1|	-	0.37	10.4	37.8	1.1	8.8	5.0	3.6	1	1	2	3	3	3	0	Mnd1	family
Tropomyosin_1	PF12718.2	gi|124027957|ref|YP_001013277.1|	-	0.46	10.3	40.7	8.6	6.2	10.8	3.4	1	1	0	2	2	2	0	Tropomyosin	like
ALIX_LYPXL_bnd	PF13949.1	gi|124027957|ref|YP_001013277.1|	-	0.48	9.3	47.3	0.27	10.1	14.2	3.3	1	1	2	3	3	3	0	ALIX	V-shaped	domain	binding	to	HIV
AAA_27	PF13514.1	gi|124027957|ref|YP_001013277.1|	-	0.55	7.8	45.7	0.98	7.0	17.5	2.0	1	1	1	2	2	2	0	AAA	domain
COG2	PF06148.6	gi|124027957|ref|YP_001013277.1|	-	0.69	9.7	26.8	0.14	12.0	4.9	3.6	1	1	1	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3450	PF11932.3	gi|124027957|ref|YP_001013277.1|	-	0.81	8.9	32.4	0.11	11.7	1.9	3.5	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3450)
Herpes_UL6	PF01763.11	gi|124027957|ref|YP_001013277.1|	-	0.82	7.7	22.5	0.11	10.5	1.2	3.1	1	1	1	3	3	3	0	Herpesvirus	UL6	like
zf-C4H2	PF10146.4	gi|124027957|ref|YP_001013277.1|	-	0.9	9.5	32.1	0.55	10.2	12.2	2.4	1	1	1	2	2	2	0	Zinc	finger-containing	protein
MitMem_reg	PF13012.1	gi|124027957|ref|YP_001013277.1|	-	0.91	9.6	8.0	9	6.4	0.5	2.9	2	1	0	2	2	2	0	Maintenance	of	mitochondrial	structure	and	function
TPR_MLP1_2	PF07926.7	gi|124027957|ref|YP_001013277.1|	-	0.94	9.2	36.3	0.4	10.4	5.0	3.9	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
V_ATPase_I	PF01496.14	gi|124027957|ref|YP_001013277.1|	-	1	7.1	26.3	2.5	5.8	18.1	2.1	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Phage_GP20	PF06810.6	gi|124027957|ref|YP_001013277.1|	-	1.2	8.6	16.5	0.05	13.0	1.7	3.6	1	1	1	3	3	3	0	Phage	minor	structural	protein	GP20
Cauli_DNA-bind	PF03310.8	gi|124027957|ref|YP_001013277.1|	-	1.4	8.8	11.4	0.39	10.5	1.1	2.9	3	0	0	3	3	2	0	Caulimovirus	DNA-binding	protein
Orthopox_A5L	PF06193.6	gi|124027957|ref|YP_001013277.1|	-	1.5	8.7	12.5	3.3	7.6	1.6	3.4	1	1	1	2	2	2	0	Orthopoxvirus	A5L	protein-like
bZIP_1	PF00170.16	gi|124027957|ref|YP_001013277.1|	-	1.6	8.7	40.0	0.21	11.5	0.2	6.2	2	2	4	6	6	5	0	bZIP	transcription	factor
CorA	PF01544.13	gi|124027957|ref|YP_001013277.1|	-	1.7	7.6	37.2	0.15	11.1	3.8	3.1	2	1	1	3	3	3	0	CorA-like	Mg2+	transporter	protein
Hormone_1	PF00103.15	gi|124027957|ref|YP_001013277.1|	-	1.7	7.9	7.1	8.2	5.7	0.6	2.9	1	1	0	2	2	2	0	Somatotropin	hormone	family
DUF4201	PF13870.1	gi|124027957|ref|YP_001013277.1|	-	2.1	7.7	41.7	3.3	7.1	6.3	3.8	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
DUF4618	PF15397.1	gi|124027957|ref|YP_001013277.1|	-	2.2	7.5	32.6	2.5	7.3	1.3	3.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
CENP-F_leu_zip	PF10473.4	gi|124027957|ref|YP_001013277.1|	-	2.6	7.9	53.1	0.77	9.6	11.7	4.1	1	1	2	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
SCP-1	PF05483.7	gi|124027957|ref|YP_001013277.1|	-	2.7	5.6	33.0	0.094	10.4	9.9	2.1	1	1	1	2	2	2	0	Synaptonemal	complex	protein	1	(SCP-1)
SOR_SNZ	PF01680.12	gi|124027957|ref|YP_001013277.1|	-	2.8	7.5	8.5	0.2	11.2	0.8	2.3	2	1	0	2	2	2	0	SOR/SNZ	family
YvrJ	PF12841.2	gi|124027957|ref|YP_001013277.1|	-	2.8	7.3	5.3	1.2	8.4	0.2	2.9	2	1	2	4	4	4	0	YvrJ	protein	family
DUF3373	PF11853.3	gi|124027957|ref|YP_001013277.1|	-	5.8	5.3	11.7	0.6	8.5	0.5	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3373)
DUF342	PF03961.8	gi|124027957|ref|YP_001013277.1|	-	6.3	5.0	35.2	0.81	8.0	4.8	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF342)
Kinetocho_Slk19	PF12709.2	gi|124027957|ref|YP_001013277.1|	-	6.6	6.8	24.5	1.8	8.6	1.2	5.0	3	2	1	4	4	4	0	Central	kinetochore-associated
TMPIT	PF07851.8	gi|124027957|ref|YP_001013277.1|	-	7.8	5.4	18.8	1.9	7.5	2.9	2.8	1	1	3	4	4	4	0	TMPIT-like	protein
Cluap1	PF10234.4	gi|124027957|ref|YP_001013277.1|	-	8.1	5.5	32.1	0.5	9.5	7.5	2.9	1	1	1	3	3	3	0	Clusterin-associated	protein-1
Med10	PF09748.4	gi|124027957|ref|YP_001013277.1|	-	9.2	6.0	10.4	4.8	7.0	0.3	4.0	1	1	2	3	3	3	0	Transcription	factor	subunit	Med10	of	Mediator	complex
Atg14	PF10186.4	gi|124027957|ref|YP_001013277.1|	-	9.4	5.0	49.3	12	4.7	14.7	3.3	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FlxA	PF14282.1	gi|124027957|ref|YP_001013277.1|	-	9.7	6.1	24.5	0.097	12.6	3.2	3.5	2	1	1	3	3	2	0	FlxA-like	protein
SWIM	PF04434.12	gi|124027958|ref|YP_001013278.1|	-	0.00029	20.2	1.2	0.00058	19.2	0.9	1.5	1	1	0	1	1	1	1	SWIM	zinc	finger
BPL_C	PF02237.12	gi|124027958|ref|YP_001013278.1|	-	0.079	12.6	0.0	0.26	10.9	0.0	1.9	2	0	0	2	2	2	0	Biotin	protein	ligase	C	terminal	domain
Rib_5-P_isom_A	PF06026.9	gi|124027959|ref|YP_001013279.1|	-	1.6e-38	131.7	0.0	1.9e-38	131.4	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|124027959|ref|YP_001013279.1|	-	0.0095	15.5	0.1	0.29	10.7	0.0	2.1	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.8	gi|124027959|ref|YP_001013279.1|	-	0.032	13.1	0.0	0.052	12.4	0.0	1.3	1	0	0	1	1	1	0	Putative	sugar-binding	domain
Radical_SAM	PF04055.16	gi|124027960|ref|YP_001013280.1|	-	1.5e-27	96.7	0.3	2.5e-27	96.0	0.2	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.15	gi|124027960|ref|YP_001013280.1|	-	3.7e-23	81.1	0.5	6.1e-23	80.4	0.3	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.15	gi|124027960|ref|YP_001013280.1|	-	0.0011	18.6	0.0	0.0022	17.7	0.0	1.5	1	0	0	1	1	1	1	TRAM	domain
ThiS	PF02597.15	gi|124027961|ref|YP_001013281.1|	-	8.7e-15	54.9	0.2	1.2e-14	54.4	0.1	1.2	1	0	0	1	1	1	1	ThiS	family
Ub-Mut7C	PF14451.1	gi|124027961|ref|YP_001013281.1|	-	0.001	18.5	0.0	0.048	13.1	0.0	2.1	2	0	0	2	2	2	2	Mut7-C	ubiquitin
TGS	PF02824.16	gi|124027961|ref|YP_001013281.1|	-	0.02	14.7	0.1	0.04	13.7	0.0	1.5	1	0	0	1	1	1	0	TGS	domain
Polysacc_deac_1	PF01522.16	gi|124027962|ref|YP_001013282.1|	-	4e-20	71.6	0.0	6.1e-20	71.0	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glycos_transf_1	PF00534.15	gi|124027963|ref|YP_001013283.1|	-	4.6e-28	97.7	0.0	1.6e-27	96.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|124027963|ref|YP_001013283.1|	-	2.1e-27	95.9	0.1	4.4e-27	94.9	0.0	1.6	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|124027963|ref|YP_001013283.1|	-	7.2e-19	68.4	2.7	7.8e-19	68.3	0.0	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.1	gi|124027963|ref|YP_001013283.1|	-	5e-12	46.1	0.8	1.6e-11	44.4	0.1	2.0	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|124027963|ref|YP_001013283.1|	-	3.9e-11	43.0	0.0	7.8e-11	42.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|124027963|ref|YP_001013283.1|	-	1.3e-08	34.7	0.3	2e-08	34.1	0.2	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.6	gi|124027963|ref|YP_001013283.1|	-	0.0055	16.2	0.1	0.03	13.8	0.0	1.9	1	1	1	2	2	2	1	Starch	synthase	catalytic	domain
Serine_rich	PF08824.5	gi|124027963|ref|YP_001013283.1|	-	0.14	11.8	0.0	0.29	10.8	0.0	1.4	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
UPF0104	PF03706.8	gi|124027964|ref|YP_001013284.1|	-	3.4e-39	134.8	27.3	4.5e-39	134.4	19.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Pox_A9	PF04835.7	gi|124027964|ref|YP_001013284.1|	-	0.5	10.3	3.5	0.38	10.6	0.2	2.3	2	0	0	2	2	2	0	A9	protein	conserved	region
MerR-DNA-bind	PF09278.6	gi|124027965|ref|YP_001013285.1|	-	0.0024	18.2	4.2	0.24	11.8	0.3	2.3	2	0	0	2	2	2	2	MerR,	DNA	binding
Nnf1	PF03980.9	gi|124027965|ref|YP_001013285.1|	-	0.056	13.4	1.2	0.074	13.0	0.8	1.2	1	0	0	1	1	1	0	Nnf1
FerA	PF08165.6	gi|124027965|ref|YP_001013285.1|	-	0.066	12.8	0.6	1.4	8.6	0.1	2.6	2	1	0	2	2	2	0	FerA	(NUC095)	domain
P4Ha_N	PF08336.6	gi|124027965|ref|YP_001013285.1|	-	0.16	11.7	1.1	7.3	6.4	0.1	2.2	2	0	0	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
FlgN	PF05130.7	gi|124027965|ref|YP_001013285.1|	-	0.2	11.9	3.3	2.2	8.5	0.2	2.1	2	0	0	2	2	2	0	FlgN	protein
Cep57_CLD_2	PF14197.1	gi|124027965|ref|YP_001013285.1|	-	0.21	11.5	3.2	0.52	10.2	2.2	1.6	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
Spc42p	PF11544.3	gi|124027965|ref|YP_001013285.1|	-	1	9.3	7.5	2.8	7.9	0.2	2.4	2	0	0	2	2	2	0	Spindle	pole	body	component	Spc42p
Med9	PF07544.8	gi|124027965|ref|YP_001013285.1|	-	7.6	6.3	6.6	15	5.3	0.8	2.2	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
CarboxypepD_reg	PF13620.1	gi|124027966|ref|YP_001013286.1|	-	6.3e-07	29.3	13.4	0.019	15.0	0.3	6.2	5	1	1	6	6	6	3	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.11	gi|124027966|ref|YP_001013286.1|	-	0.00064	19.5	6.6	2.2	8.2	0.4	5.3	5	1	1	6	6	6	2	Bacterial	Ig-like	domain	(group	1)
PQQ_2	PF13360.1	gi|124027966|ref|YP_001013286.1|	-	0.0058	16.1	0.2	0.017	14.6	0.1	1.7	2	0	0	2	2	2	1	PQQ-like	domain
DUF4198	PF10670.4	gi|124027966|ref|YP_001013286.1|	-	0.036	14.0	0.0	0.3	11.0	0.0	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4198)
RAB3GAP2_N	PF14655.1	gi|124027966|ref|YP_001013286.1|	-	0.14	11.1	0.1	8.2	5.3	0.0	2.3	1	1	1	2	2	2	0	Rab3	GTPase-activating	protein	regulatory	subunit	N-terminus
T2SE	PF00437.15	gi|124027967|ref|YP_001013287.1|	-	1.4e-48	165.1	0.0	1.9e-48	164.7	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|124027967|ref|YP_001013287.1|	-	0.00066	19.1	0.2	0.0014	18.0	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|124027967|ref|YP_001013287.1|	-	0.0038	16.7	0.9	0.0064	15.9	0.1	1.7	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
ABC_tran	PF00005.22	gi|124027967|ref|YP_001013287.1|	-	0.0078	16.5	0.0	0.016	15.5	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.1	gi|124027967|ref|YP_001013287.1|	-	0.025	14.7	0.0	0.064	13.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.13	gi|124027967|ref|YP_001013287.1|	-	0.031	13.8	0.0	0.056	12.9	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
SRP54	PF00448.17	gi|124027967|ref|YP_001013287.1|	-	0.032	13.6	0.4	0.074	12.4	0.2	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|124027967|ref|YP_001013287.1|	-	0.036	13.7	0.2	0.079	12.6	0.2	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|124027967|ref|YP_001013287.1|	-	0.04	14.2	0.3	0.14	12.4	0.0	2.2	2	0	0	2	2	1	0	AAA	domain
AAA_16	PF13191.1	gi|124027967|ref|YP_001013287.1|	-	0.071	13.0	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF87	PF01935.12	gi|124027967|ref|YP_001013287.1|	-	0.093	12.5	2.2	0.25	11.1	1.4	1.8	2	0	0	2	2	1	0	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|124027967|ref|YP_001013287.1|	-	0.1	12.0	0.0	0.27	10.6	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
DUF3970	PF13113.1	gi|124027967|ref|YP_001013287.1|	-	0.1	12.2	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3970)
Miro	PF08477.8	gi|124027967|ref|YP_001013287.1|	-	0.13	12.7	0.0	0.56	10.7	0.0	2.1	3	0	0	3	3	2	0	Miro-like	protein
ATP_bind_1	PF03029.12	gi|124027967|ref|YP_001013287.1|	-	0.18	11.2	0.3	1.4	8.3	0.1	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
T2SF	PF00482.18	gi|124027968|ref|YP_001013288.1|	-	9.7e-18	64.2	2.9	2.2e-09	37.2	0.1	4.1	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
DUF91	PF01939.11	gi|124027969|ref|YP_001013289.1|	-	1e-64	217.8	0.5	1.3e-64	217.4	0.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
DUF1703	PF08011.6	gi|124027969|ref|YP_001013289.1|	-	0.00032	20.3	0.0	0.00053	19.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1703)
NERD	PF08378.6	gi|124027969|ref|YP_001013289.1|	-	0.014	15.6	0.1	0.033	14.4	0.1	1.7	1	0	0	1	1	1	0	Nuclease-related	domain
PDDEXK_4	PF14281.1	gi|124027969|ref|YP_001013289.1|	-	0.015	15.1	0.1	0.024	14.5	0.1	1.3	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
HSDR_N	PF04313.9	gi|124027969|ref|YP_001013289.1|	-	0.052	13.2	0.1	0.099	12.3	0.1	1.4	1	1	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
UPF0102	PF02021.12	gi|124027969|ref|YP_001013289.1|	-	0.1	12.5	0.0	0.22	11.4	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0102
PDDEXK_1	PF12705.2	gi|124027969|ref|YP_001013289.1|	-	0.14	11.5	0.1	0.15	11.3	0.1	1.2	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
DNA_primase_lrg	PF04104.9	gi|124027970|ref|YP_001013290.1|	-	3.4e-32	111.7	0.0	4.5e-32	111.3	0.0	1.1	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
HTH_29	PF13551.1	gi|124027970|ref|YP_001013290.1|	-	0.31	11.1	3.1	0.68	10.1	0.1	2.9	3	1	1	4	4	4	0	Winged	helix-turn	helix
HTH_AsnC-type	PF13404.1	gi|124027971|ref|YP_001013291.1|	-	1e-07	31.3	0.6	1.5e-07	30.8	0.4	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_45	PF14947.1	gi|124027971|ref|YP_001013291.1|	-	2.6e-07	30.3	0.0	2.9e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|124027971|ref|YP_001013291.1|	-	3.8e-07	29.3	0.0	5.7e-07	28.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.4	gi|124027971|ref|YP_001013291.1|	-	2.9e-06	27.1	0.1	3.7e-06	26.7	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Mrr_N	PF14338.1	gi|124027971|ref|YP_001013291.1|	-	3.5e-06	27.0	0.2	0.022	14.8	0.1	2.1	1	1	1	2	2	2	2	Mrr	N-terminal	domain
HTH_20	PF12840.2	gi|124027971|ref|YP_001013291.1|	-	8.9e-05	22.2	0.2	0.00011	21.8	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|124027971|ref|YP_001013291.1|	-	0.00015	22.0	0.2	0.00017	21.7	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|124027971|ref|YP_001013291.1|	-	0.00026	20.6	0.1	0.00033	20.2	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|124027971|ref|YP_001013291.1|	-	0.00035	20.1	0.2	0.00043	19.9	0.2	1.1	1	0	0	1	1	1	1	MarR	family
DUF4423	PF14394.1	gi|124027971|ref|YP_001013291.1|	-	0.00052	19.6	0.0	0.00053	19.5	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_5	PF01022.15	gi|124027971|ref|YP_001013291.1|	-	0.00068	19.2	0.0	0.0012	18.4	0.0	1.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
DUF1889	PF08986.5	gi|124027971|ref|YP_001013291.1|	-	0.001	19.2	0.0	0.001	19.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1889)
DUF2161	PF09929.4	gi|124027971|ref|YP_001013291.1|	-	0.0018	18.1	0.0	0.0021	17.9	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2161)
HTH_IclR	PF09339.5	gi|124027971|ref|YP_001013291.1|	-	0.0031	17.0	0.0	0.0054	16.2	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
FaeA	PF04703.7	gi|124027971|ref|YP_001013291.1|	-	0.0035	17.4	0.0	0.0044	17.1	0.0	1.1	1	0	0	1	1	1	1	FaeA-like	protein
HrcA_DNA-bdg	PF03444.10	gi|124027971|ref|YP_001013291.1|	-	0.006	15.9	0.0	0.0075	15.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|124027971|ref|YP_001013291.1|	-	0.05	13.7	0.1	0.062	13.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
MarR	PF01047.17	gi|124027971|ref|YP_001013291.1|	-	0.056	13.1	0.0	0.075	12.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF505	PF04458.7	gi|124027971|ref|YP_001013291.1|	-	0.06	11.4	0.1	0.061	11.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HemN_C	PF06969.11	gi|124027971|ref|YP_001013291.1|	-	0.066	13.2	0.2	0.12	12.4	0.0	1.4	2	0	0	2	2	1	0	HemN	C-terminal	domain
Fe_dep_repress	PF01325.14	gi|124027971|ref|YP_001013291.1|	-	0.094	12.6	0.0	0.52	10.3	0.0	1.9	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Myb_DNA-binding	PF00249.26	gi|124027971|ref|YP_001013291.1|	-	0.097	12.7	0.3	0.35	10.9	0.1	2.0	1	1	0	1	1	1	0	Myb-like	DNA-binding	domain
Phage_rep_org_N	PF09681.5	gi|124027971|ref|YP_001013291.1|	-	0.12	11.8	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_12	PF08461.5	gi|124027971|ref|YP_001013291.1|	-	0.47	10.2	2.7	1	9.1	1.8	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Ribosomal_S25	PF03297.10	gi|124027972|ref|YP_001013292.1|	-	1.1e-08	35.0	0.1	1.1e-08	35.0	0.1	1.0	1	0	0	1	1	1	1	S25	ribosomal	protein
HTH_24	PF13412.1	gi|124027972|ref|YP_001013292.1|	-	0.0011	18.2	0.1	0.0019	17.5	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
EAP30	PF04157.11	gi|124027972|ref|YP_001013292.1|	-	0.0019	17.4	0.0	0.002	17.3	0.0	1.1	1	0	0	1	1	1	1	EAP30/Vps36	family
GntR	PF00392.16	gi|124027972|ref|YP_001013292.1|	-	0.0023	17.3	0.2	0.0041	16.5	0.1	1.5	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|124027972|ref|YP_001013292.1|	-	0.0066	16.3	0.1	0.0078	16.1	0.1	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.1	gi|124027972|ref|YP_001013292.1|	-	0.011	15.6	0.0	0.016	15.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|124027972|ref|YP_001013292.1|	-	0.012	15.6	0.0	0.016	15.3	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Mor	PF08765.6	gi|124027972|ref|YP_001013292.1|	-	0.029	14.1	0.2	0.046	13.4	0.1	1.4	1	1	0	1	1	1	0	Mor	transcription	activator	family
MarR	PF01047.17	gi|124027972|ref|YP_001013292.1|	-	0.039	13.6	0.0	0.05	13.3	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.7	gi|124027972|ref|YP_001013292.1|	-	0.047	13.3	0.0	0.056	13.0	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
TrmB	PF01978.14	gi|124027972|ref|YP_001013292.1|	-	0.086	12.5	0.6	0.12	12.1	0.2	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|124027972|ref|YP_001013292.1|	-	0.1	12.3	0.1	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	MarR	family
FbpA	PF05833.6	gi|124027973|ref|YP_001013293.1|	-	1.4e-48	165.6	0.0	1.8e-48	165.2	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|124027973|ref|YP_001013293.1|	-	8.6e-26	89.6	0.0	1.7e-25	88.7	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
PEP-utilisers_N	PF05524.8	gi|124027973|ref|YP_001013293.1|	-	0.0015	18.3	5.0	0.055	13.2	0.7	2.7	2	0	0	2	2	2	1	PEP-utilising	enzyme,	N-terminal
GAS	PF13851.1	gi|124027973|ref|YP_001013293.1|	-	0.0023	17.1	2.9	0.044	12.9	0.2	2.2	2	0	0	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
COG2	PF06148.6	gi|124027973|ref|YP_001013293.1|	-	0.028	14.2	0.6	5.2	6.9	0.1	2.4	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
TMF_DNA_bd	PF12329.3	gi|124027973|ref|YP_001013293.1|	-	0.037	13.8	6.3	0.3	10.9	0.3	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Reo_sigmaC	PF04582.7	gi|124027973|ref|YP_001013293.1|	-	0.04	13.0	0.0	0.42	9.7	0.0	2.0	2	0	0	2	2	2	0	Reovirus	sigma	C	capsid	protein
V_ATPase_I	PF01496.14	gi|124027973|ref|YP_001013293.1|	-	0.059	11.2	0.6	0.53	8.0	0.0	2.0	2	0	0	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Prefoldin_2	PF01920.15	gi|124027973|ref|YP_001013293.1|	-	0.065	13.0	7.4	0.3	10.8	0.2	2.5	2	0	0	2	2	2	0	Prefoldin	subunit
ALIX_LYPXL_bnd	PF13949.1	gi|124027973|ref|YP_001013293.1|	-	0.074	11.9	0.1	0.17	10.8	0.1	1.5	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
BLOC1_2	PF10046.4	gi|124027973|ref|YP_001013293.1|	-	0.08	13.0	2.3	0.75	9.9	0.2	2.3	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TBPIP	PF07106.8	gi|124027973|ref|YP_001013293.1|	-	0.12	11.9	1.7	5	6.6	0.1	2.3	2	0	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
FlaC_arch	PF05377.6	gi|124027973|ref|YP_001013293.1|	-	0.26	11.2	2.7	2.7	7.9	0.2	2.5	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Laminin_II	PF06009.7	gi|124027973|ref|YP_001013293.1|	-	0.28	10.9	3.0	1.5	8.5	0.7	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
IncA	PF04156.9	gi|124027973|ref|YP_001013293.1|	-	0.47	10.0	2.9	3.1	7.3	0.1	2.3	2	0	0	2	2	2	0	IncA	protein
PspA_IM30	PF04012.7	gi|124027973|ref|YP_001013293.1|	-	0.72	9.1	9.9	0.62	9.3	1.5	2.4	2	0	0	2	2	2	0	PspA/IM30	family
THOC7	PF05615.8	gi|124027973|ref|YP_001013293.1|	-	1.8	8.8	6.4	5.9	7.1	0.6	2.6	3	0	0	3	3	2	0	Tho	complex	subunit	7
Mnd1	PF03962.10	gi|124027973|ref|YP_001013293.1|	-	3.8	7.1	7.3	6.8	6.3	0.3	3.0	3	0	0	3	3	3	0	Mnd1	family
Rab5ip	PF07019.7	gi|124027974|ref|YP_001013294.1|	-	0.0037	17.3	0.9	0.0055	16.8	0.6	1.2	1	0	0	1	1	1	1	Rab5-interacting	protein	(Rab5ip)
DUF1469	PF07332.6	gi|124027974|ref|YP_001013294.1|	-	0.019	14.7	3.9	0.036	13.8	2.7	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
MgtC	PF02308.11	gi|124027974|ref|YP_001013294.1|	-	0.024	14.4	1.3	0.036	13.8	0.0	1.9	2	0	0	2	2	2	0	MgtC	family
Lactate_perm	PF02652.9	gi|124027974|ref|YP_001013294.1|	-	0.032	12.7	0.4	0.042	12.3	0.3	1.1	1	0	0	1	1	1	0	L-lactate	permease
ACT_7	PF13840.1	gi|124027974|ref|YP_001013294.1|	-	0.065	12.7	0.1	0.1	12.1	0.1	1.4	1	0	0	1	1	1	0	ACT	domain
SdpI	PF13630.1	gi|124027974|ref|YP_001013294.1|	-	0.8	9.4	4.2	0.38	10.5	0.3	1.9	2	0	0	2	2	2	0	SdpI/YhfL	protein	family
DUF2892	PF11127.3	gi|124027974|ref|YP_001013294.1|	-	2.2	8.1	7.5	0.53	10.1	1.9	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
DUF2613	PF11021.3	gi|124027974|ref|YP_001013294.1|	-	9	6.1	6.8	8.8	6.1	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
RNA_Me_trans	PF04252.8	gi|124027975|ref|YP_001013295.1|	-	5.9e-45	153.0	0.0	7.2e-45	152.7	0.0	1.0	1	0	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
tRNA_m1G_MT	PF01746.16	gi|124027975|ref|YP_001013295.1|	-	0.00064	19.3	0.0	0.00088	18.9	0.0	1.2	1	0	0	1	1	1	1	tRNA	(Guanine-1)-methyltransferase
Lactamase_B_2	PF12706.2	gi|124027976|ref|YP_001013296.1|	-	3.1e-09	36.6	0.0	4.1e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|124027976|ref|YP_001013296.1|	-	1.1e-06	28.4	0.5	3.7e-06	26.7	0.2	1.9	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|124027976|ref|YP_001013296.1|	-	4.6e-06	26.4	0.0	8.8e-06	25.5	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
dTMP_synthase	PF02593.9	gi|124027976|ref|YP_001013296.1|	-	0.11	11.8	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	Thymidylate	synthase
DUF4390	PF14334.1	gi|124027976|ref|YP_001013296.1|	-	0.11	11.6	0.1	0.2	10.8	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4390)
tRNA-synt_1g	PF09334.6	gi|124027978|ref|YP_001013298.1|	-	2.1e-153	510.6	0.0	2.5e-153	510.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|124027978|ref|YP_001013298.1|	-	3.8e-16	58.2	0.0	1.2e-08	33.4	0.0	3.6	2	2	1	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|124027978|ref|YP_001013298.1|	-	1.8e-09	37.5	0.0	4e-09	36.4	0.0	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.14	gi|124027978|ref|YP_001013298.1|	-	0.00015	21.0	0.0	0.0088	15.1	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|124027978|ref|YP_001013298.1|	-	0.069	11.8	0.0	1.6	7.2	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
DZR	PF12773.2	gi|124027978|ref|YP_001013298.1|	-	0.091	12.5	5.3	0.5	10.2	3.9	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
TerY-C	PF15616.1	gi|124027978|ref|YP_001013298.1|	-	0.15	11.9	1.6	0.29	11.0	1.1	1.3	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zf-Di19	PF05605.7	gi|124027978|ref|YP_001013298.1|	-	0.38	10.9	1.2	0.87	9.7	0.8	1.5	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
zinc_ribbon_2	PF13240.1	gi|124027978|ref|YP_001013298.1|	-	3.2	7.3	8.0	3.8	7.1	0.2	2.7	2	0	0	2	2	2	0	zinc-ribbon	domain
PfkB	PF00294.19	gi|124027979|ref|YP_001013299.1|	-	5.1e-44	150.5	2.2	6.7e-44	150.2	1.6	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|124027979|ref|YP_001013299.1|	-	0.065	12.4	0.0	0.1	11.7	0.0	1.3	1	0	0	1	1	1	0	Phosphomethylpyrimidine	kinase
CxxCxxCC	PF03692.10	gi|124027980|ref|YP_001013300.1|	-	1.7e-16	60.4	0.2	2.7e-16	59.8	0.2	1.3	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
DUF2208	PF09973.4	gi|124027981|ref|YP_001013301.1|	-	4.3e-78	261.7	2.5	5.1e-78	261.5	1.7	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
YqzM	PF14141.1	gi|124027981|ref|YP_001013301.1|	-	0.064	13.0	0.4	0.064	13.0	0.3	2.1	2	0	0	2	2	2	0	YqzM-like	protein
Wyosine_form	PF08608.7	gi|124027982|ref|YP_001013302.1|	-	1.5e-17	63.4	0.0	3.1e-17	62.4	0.0	1.6	1	0	0	1	1	1	1	Wyosine	base	formation
Radical_SAM	PF04055.16	gi|124027982|ref|YP_001013302.1|	-	6.2e-17	62.2	0.0	1.5e-16	60.9	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
Sigma_reg_N	PF13800.1	gi|124027982|ref|YP_001013302.1|	-	0.11	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Sigma	factor	regulator	N-terminal
DNA_binding_1	PF01035.15	gi|124027983|ref|YP_001013303.1|	-	2e-20	72.3	0.0	1.2e-19	69.8	0.0	1.8	2	0	0	2	2	2	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Lactamase_B_2	PF12706.2	gi|124027984|ref|YP_001013304.1|	-	4.3e-08	32.9	0.1	1.7e-07	30.9	0.0	2.0	2	1	0	3	3	3	1	Beta-lactamase	superfamily	domain
DRMBL	PF07522.9	gi|124027984|ref|YP_001013304.1|	-	0.0029	17.6	0.1	0.0054	16.7	0.1	1.4	1	0	0	1	1	1	1	DNA	repair	metallo-beta-lactamase
RMMBL	PF07521.7	gi|124027984|ref|YP_001013304.1|	-	0.0034	17.1	0.0	0.007	16.1	0.0	1.5	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B	PF00753.22	gi|124027984|ref|YP_001013304.1|	-	0.18	11.4	5.7	0.7	9.5	3.9	1.9	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
Glu-tRNAGln	PF02686.10	gi|124027985|ref|YP_001013305.1|	-	1e-15	57.3	0.1	1.3e-15	56.9	0.0	1.2	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
DUF2250	PF10007.4	gi|124027985|ref|YP_001013305.1|	-	0.0093	15.8	0.1	0.011	15.5	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
BtpA	PF03437.10	gi|124027986|ref|YP_001013306.1|	-	5.5e-76	255.1	0.0	6.2e-76	254.9	0.0	1.0	1	0	0	1	1	1	1	BtpA	family
Fe-ADH_2	PF13685.1	gi|124027986|ref|YP_001013306.1|	-	0.088	12.0	0.0	0.17	11.1	0.0	1.5	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Fim-adh_lectin	PF09222.5	gi|124027986|ref|YP_001013306.1|	-	0.12	11.6	0.0	0.2	10.9	0.0	1.2	1	0	0	1	1	1	0	Fimbrial	adhesin	F17-AG,	lectin	domain
Thioredoxin	PF00085.15	gi|124027987|ref|YP_001013307.1|	-	1.1e-23	82.8	0.0	1.4e-23	82.5	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|124027987|ref|YP_001013307.1|	-	1.6e-08	34.5	0.1	5.1e-07	29.7	0.0	2.3	1	1	1	2	2	2	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|124027987|ref|YP_001013307.1|	-	4e-06	26.9	0.1	2.5e-05	24.4	0.0	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_9	PF14595.1	gi|124027987|ref|YP_001013307.1|	-	6e-05	22.6	0.0	7.7e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_3	PF13192.1	gi|124027987|ref|YP_001013307.1|	-	0.00035	20.3	0.2	0.0019	17.9	0.0	2.1	1	1	1	2	2	2	1	Thioredoxin	domain
DIM1	PF02966.11	gi|124027987|ref|YP_001013307.1|	-	0.0011	18.4	0.0	0.0014	18.1	0.0	1.1	1	0	0	1	1	1	1	Mitosis	protein	DIM1
Redoxin	PF08534.5	gi|124027987|ref|YP_001013307.1|	-	0.0019	17.7	0.3	0.0041	16.6	0.1	1.6	1	1	1	2	2	2	1	Redoxin
RNB	PF00773.14	gi|124027987|ref|YP_001013307.1|	-	0.012	14.9	0.2	0.2	10.8	0.2	2.0	1	1	0	2	2	2	0	RNB	domain
Thioredoxin_7	PF13899.1	gi|124027987|ref|YP_001013307.1|	-	0.012	15.6	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|124027987|ref|YP_001013307.1|	-	0.017	14.8	0.0	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	AhpC/TSA	family
GnsAB	PF08178.6	gi|124027987|ref|YP_001013307.1|	-	0.053	13.1	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	GnsA/GnsB	family
Thioredoxin_6	PF13848.1	gi|124027987|ref|YP_001013307.1|	-	0.073	12.8	0.0	0.15	11.8	0.0	1.5	1	1	0	1	1	1	0	Thioredoxin-like	domain
HyaE	PF07449.6	gi|124027987|ref|YP_001013307.1|	-	0.12	12.2	0.0	0.18	11.7	0.0	1.5	1	1	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
UPF0047	PF01894.12	gi|124027988|ref|YP_001013308.1|	-	2.1e-37	127.5	0.0	2.5e-37	127.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
Latrotoxin_C	PF15658.1	gi|124027988|ref|YP_001013308.1|	-	0.06	13.1	0.1	0.08	12.7	0.0	1.3	1	0	0	1	1	1	0	Latrotoxin	C-terminal	domain
QRPTase_C	PF01729.14	gi|124027989|ref|YP_001013309.1|	-	1.2e-27	96.5	0.0	1.6e-27	96.0	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|124027989|ref|YP_001013309.1|	-	2.9e-06	27.0	0.0	5.8e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Cren7	PF11520.3	gi|124027992|ref|YP_001013312.1|	-	4.3e-33	112.7	2.2	4.7e-33	112.6	1.6	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
YL1_C	PF08265.6	gi|124027992|ref|YP_001013312.1|	-	0.064	12.8	0.0	5.4	6.6	0.0	2.2	2	0	0	2	2	2	0	YL1	nuclear	protein	C-terminal	domain
TrmB	PF01978.14	gi|124027993|ref|YP_001013313.1|	-	3.8e-06	26.5	0.0	0.0031	17.1	0.0	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|124027993|ref|YP_001013313.1|	-	5e-05	23.0	0.1	0.018	14.8	0.0	2.3	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
GntR	PF00392.16	gi|124027993|ref|YP_001013313.1|	-	0.00034	19.9	0.2	0.39	10.1	0.0	2.2	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|124027993|ref|YP_001013313.1|	-	0.00086	19.1	0.0	1.5	8.7	0.0	2.3	2	0	0	2	2	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|124027993|ref|YP_001013313.1|	-	0.0092	15.6	0.2	0.17	11.5	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_36	PF13730.1	gi|124027993|ref|YP_001013313.1|	-	0.011	15.8	0.3	1.6	8.9	0.0	2.7	4	0	0	4	4	3	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|124027993|ref|YP_001013313.1|	-	0.012	15.3	0.0	1.9	8.2	0.0	2.4	2	0	0	2	2	2	0	MarR	family
HTH_23	PF13384.1	gi|124027993|ref|YP_001013313.1|	-	0.019	14.6	0.0	0.48	10.1	0.0	2.4	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_10	PF04967.7	gi|124027993|ref|YP_001013313.1|	-	0.021	14.3	0.0	5.4	6.6	0.0	2.2	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_17	PF12728.2	gi|124027993|ref|YP_001013313.1|	-	0.023	14.9	0.8	1.5	9.0	0.0	3.0	3	1	0	3	3	3	0	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|124027993|ref|YP_001013313.1|	-	0.024	14.1	0.3	0.17	11.4	0.0	2.4	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|124027993|ref|YP_001013313.1|	-	0.086	12.6	0.5	3.2	7.6	0.0	2.6	3	0	0	3	3	3	0	Helix-turn-helix	domain
LacI	PF00356.16	gi|124027993|ref|YP_001013313.1|	-	0.094	12.3	0.2	14	5.3	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Rrf2	PF02082.15	gi|124027993|ref|YP_001013313.1|	-	0.11	12.6	0.0	1.5	8.9	0.0	2.5	3	0	0	3	3	3	0	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|124027993|ref|YP_001013313.1|	-	0.15	11.6	0.7	0.9	9.1	0.0	2.1	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
AdoHcyase	PF05221.12	gi|124027994|ref|YP_001013314.1|	-	4.5e-68	229.1	0.0	5.2e-68	228.8	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|124027994|ref|YP_001013314.1|	-	8.5e-60	201.2	0.2	1.4e-59	200.6	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|124027994|ref|YP_001013314.1|	-	1.6e-10	40.4	0.4	3e-10	39.5	0.3	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|124027994|ref|YP_001013314.1|	-	1e-08	34.7	0.1	1.9e-08	33.8	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
THF_DHG_CYH_C	PF02882.14	gi|124027994|ref|YP_001013314.1|	-	0.0081	15.2	0.6	0.06	12.4	0.4	2.1	1	1	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
AlaDh_PNT_C	PF01262.16	gi|124027994|ref|YP_001013314.1|	-	0.013	15.0	1.0	0.049	13.2	0.5	1.9	1	1	1	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
V_ATPase_I	PF01496.14	gi|124027995|ref|YP_001013315.1|	-	0.0027	15.6	2.1	0.0031	15.4	1.5	1.1	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
Myosin_tail_1	PF01576.14	gi|124027995|ref|YP_001013315.1|	-	0.0034	15.2	11.5	0.0048	14.6	8.0	1.2	1	0	0	1	1	1	1	Myosin	tail
Baculo_PEP_C	PF04513.7	gi|124027995|ref|YP_001013315.1|	-	0.0047	16.7	0.4	0.011	15.5	0.3	1.6	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
CorA	PF01544.13	gi|124027995|ref|YP_001013315.1|	-	0.0078	15.2	1.2	0.012	14.6	0.8	1.3	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
Moulting_cycle	PF04870.11	gi|124027995|ref|YP_001013315.1|	-	0.01	14.9	0.8	0.013	14.6	0.5	1.2	1	0	0	1	1	1	0	Moulting	cycle
Prefoldin_2	PF01920.15	gi|124027995|ref|YP_001013315.1|	-	0.012	15.3	4.1	0.014	15.1	1.5	2.1	1	1	0	1	1	1	0	Prefoldin	subunit
DUF3450	PF11932.3	gi|124027995|ref|YP_001013315.1|	-	0.012	14.8	3.2	0.019	14.2	2.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
TBPIP	PF07106.8	gi|124027995|ref|YP_001013315.1|	-	0.013	15.0	3.9	0.023	14.2	2.3	1.7	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
FHIPEP	PF00771.15	gi|124027995|ref|YP_001013315.1|	-	0.013	13.8	3.4	0.015	13.6	2.4	1.1	1	0	0	1	1	1	0	FHIPEP	family
Matrilin_ccoil	PF10393.4	gi|124027995|ref|YP_001013315.1|	-	0.016	14.5	0.7	0.016	14.5	0.5	2.6	2	1	1	3	3	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
APG6	PF04111.7	gi|124027995|ref|YP_001013315.1|	-	0.017	14.2	2.5	0.021	13.8	1.7	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
RHH_1	PF01402.16	gi|124027995|ref|YP_001013315.1|	-	0.017	14.9	3.9	0.022	14.6	0.1	3.3	3	0	0	3	3	2	0	Ribbon-helix-helix	protein,	copG	family
DUF724	PF05266.9	gi|124027995|ref|YP_001013315.1|	-	0.026	14.1	3.0	0.051	13.2	2.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF2730	PF10805.3	gi|124027995|ref|YP_001013315.1|	-	0.026	14.2	2.7	0.12	12.1	0.7	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
Fib_alpha	PF08702.5	gi|124027995|ref|YP_001013315.1|	-	0.027	14.6	3.3	0.051	13.6	1.9	1.7	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
COG2	PF06148.6	gi|124027995|ref|YP_001013315.1|	-	0.029	14.2	5.0	0.1	12.5	3.4	2.0	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF2203	PF09969.4	gi|124027995|ref|YP_001013315.1|	-	0.031	14.4	4.5	0.074	13.2	2.2	2.2	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
IFT57	PF10498.4	gi|124027995|ref|YP_001013315.1|	-	0.032	12.9	1.7	0.049	12.3	1.2	1.4	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
Fzo_mitofusin	PF04799.8	gi|124027995|ref|YP_001013315.1|	-	0.037	13.4	0.7	0.065	12.6	0.5	1.4	1	0	0	1	1	1	0	fzo-like	conserved	region
PG_binding_2	PF08823.6	gi|124027995|ref|YP_001013315.1|	-	0.042	13.9	1.3	1.8	8.7	0.0	3.3	3	0	0	3	3	3	0	Putative	peptidoglycan	binding	domain
Sec34	PF04136.10	gi|124027995|ref|YP_001013315.1|	-	0.055	13.1	0.2	0.093	12.4	0.1	1.3	1	0	0	1	1	1	0	Sec34-like	family
DUF342	PF03961.8	gi|124027995|ref|YP_001013315.1|	-	0.058	11.8	0.6	0.074	11.4	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
Reo_sigmaC	PF04582.7	gi|124027995|ref|YP_001013315.1|	-	0.086	12.0	0.3	0.11	11.6	0.2	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
CALCOCO1	PF07888.6	gi|124027995|ref|YP_001013315.1|	-	0.1	10.9	7.0	0.13	10.5	4.9	1.2	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
DUF972	PF06156.8	gi|124027995|ref|YP_001013315.1|	-	0.11	12.8	4.2	0.18	12.1	2.2	1.9	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF972)
Tweety	PF04906.8	gi|124027995|ref|YP_001013315.1|	-	0.11	10.8	1.3	0.16	10.3	0.9	1.2	1	0	0	1	1	1	0	Tweety
DUF1664	PF07889.7	gi|124027995|ref|YP_001013315.1|	-	0.16	11.7	2.3	0.24	11.2	1.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Atg14	PF10186.4	gi|124027995|ref|YP_001013315.1|	-	0.2	10.5	6.5	0.27	10.1	4.5	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FUSC	PF04632.7	gi|124027995|ref|YP_001013315.1|	-	0.36	9.1	5.1	0.46	8.8	3.5	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Mnd1	PF03962.10	gi|124027995|ref|YP_001013315.1|	-	0.41	10.2	4.5	0.73	9.4	3.1	1.5	1	0	0	1	1	1	0	Mnd1	family
BLOC1_2	PF10046.4	gi|124027995|ref|YP_001013315.1|	-	0.58	10.3	3.6	2.6	8.2	0.7	2.5	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
IncA	PF04156.9	gi|124027995|ref|YP_001013315.1|	-	0.91	9.0	11.6	1.5	8.3	8.0	1.5	1	1	0	1	1	1	0	IncA	protein
DUF2721	PF11026.3	gi|124027995|ref|YP_001013315.1|	-	1.3	8.6	6.1	2.4	7.7	3.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
Nup54	PF13874.1	gi|124027995|ref|YP_001013315.1|	-	1.3	8.6	13.1	1.5	8.5	7.9	1.8	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
DUF2312	PF10073.4	gi|124027995|ref|YP_001013315.1|	-	2.2	7.6	8.8	0.19	11.1	0.9	3.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Retrotrans_gag	PF03732.12	gi|124027995|ref|YP_001013315.1|	-	3.1	7.9	5.7	7	6.7	1.4	2.8	2	1	1	3	3	3	0	Retrotransposon	gag	protein
DivIC	PF04977.10	gi|124027995|ref|YP_001013315.1|	-	3.1	7.3	10.3	7.7	6.0	2.2	3.5	2	1	1	3	3	3	0	Septum	formation	initiator
ING	PF12998.2	gi|124027995|ref|YP_001013315.1|	-	4.2	7.6	7.2	8.6	6.7	1.9	3.0	2	1	1	3	3	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
bZIP_1	PF00170.16	gi|124027995|ref|YP_001013315.1|	-	5.4	7.0	12.4	0.086	12.8	0.8	3.4	3	1	0	4	4	4	0	bZIP	transcription	factor
DUF2122	PF09895.4	gi|124027996|ref|YP_001013316.1|	-	2.8e-32	111.0	0.0	3.2e-32	110.8	0.0	1.0	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
DNA_methylase	PF00145.12	gi|124027997|ref|YP_001013317.1|	-	2.1e-49	168.4	0.0	3.8e-33	115.0	0.0	2.1	1	1	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_26	PF13659.1	gi|124027997|ref|YP_001013317.1|	-	1.5e-06	28.2	0.0	2.3e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|124027997|ref|YP_001013317.1|	-	0.0027	17.2	0.0	0.0044	16.5	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.1	gi|124027997|ref|YP_001013317.1|	-	0.092	12.3	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
TFIIE_alpha	PF02002.12	gi|124027998|ref|YP_001013318.1|	-	2.3e-19	68.8	1.0	3.9e-19	68.1	0.7	1.4	1	0	0	1	1	1	1	TFIIE	alpha	subunit
GntR	PF00392.16	gi|124027998|ref|YP_001013318.1|	-	4.4e-07	29.2	0.2	1.1e-06	27.9	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_IclR	PF09339.5	gi|124027998|ref|YP_001013318.1|	-	2.8e-06	26.7	0.0	5.5e-06	25.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|124027998|ref|YP_001013318.1|	-	8.6e-06	25.0	0.1	2.5e-05	23.5	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|124027998|ref|YP_001013318.1|	-	0.00056	19.5	0.1	0.0013	18.3	0.1	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TF_Zn_Ribbon	PF08271.7	gi|124027998|ref|YP_001013318.1|	-	0.0013	17.9	0.4	0.0025	17.0	0.3	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
MarR_2	PF12802.2	gi|124027998|ref|YP_001013318.1|	-	0.0015	18.1	0.0	0.0026	17.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|124027998|ref|YP_001013318.1|	-	0.0023	17.6	0.0	0.0063	16.2	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|124027998|ref|YP_001013318.1|	-	0.0065	16.2	0.2	0.33	10.8	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_9	PF08221.6	gi|124027998|ref|YP_001013318.1|	-	0.01	15.6	0.1	0.021	14.6	0.0	1.6	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Rrf2	PF02082.15	gi|124027998|ref|YP_001013318.1|	-	0.013	15.5	0.0	0.026	14.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.1	gi|124027998|ref|YP_001013318.1|	-	0.017	15.4	0.1	0.058	13.7	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
z-alpha	PF02295.12	gi|124027998|ref|YP_001013318.1|	-	0.023	14.4	0.0	0.046	13.5	0.0	1.4	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
HTH_29	PF13551.1	gi|124027998|ref|YP_001013318.1|	-	0.04	14.0	0.1	0.11	12.7	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn	helix
EAP30	PF04157.11	gi|124027998|ref|YP_001013318.1|	-	0.042	12.9	0.0	0.07	12.2	0.0	1.3	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_36	PF13730.1	gi|124027998|ref|YP_001013318.1|	-	0.052	13.6	0.2	0.15	12.2	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HypA	PF01155.14	gi|124027998|ref|YP_001013318.1|	-	0.067	12.8	0.0	0.12	12.0	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
SelB-wing_1	PF09105.5	gi|124027998|ref|YP_001013318.1|	-	0.067	12.8	0.1	0.16	11.6	0.0	1.7	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
HTH_Crp_2	PF13545.1	gi|124027998|ref|YP_001013318.1|	-	0.079	12.7	0.0	0.29	10.9	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
MarR	PF01047.17	gi|124027998|ref|YP_001013318.1|	-	0.091	12.4	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	MarR	family
zf-NADH-PPase	PF09297.6	gi|124027998|ref|YP_001013318.1|	-	0.11	12.0	0.3	0.27	10.7	0.2	1.6	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Fe_dep_repress	PF01325.14	gi|124027998|ref|YP_001013318.1|	-	0.14	12.1	0.9	0.24	11.3	0.1	1.7	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
zf-FPG_IleRS	PF06827.9	gi|124027998|ref|YP_001013318.1|	-	0.18	11.4	0.6	3	7.5	0.1	2.3	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Trm56	PF01994.11	gi|124027999|ref|YP_001013319.1|	-	6.7e-51	171.1	0.0	8.7e-51	170.7	0.0	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
MMR_HSR1	PF01926.18	gi|124028000|ref|YP_001013320.1|	-	6.5e-18	64.7	0.0	1.3e-17	63.8	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|124028000|ref|YP_001013320.1|	-	7.9e-10	38.2	0.0	1.6e-09	37.1	0.0	1.6	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|124028000|ref|YP_001013320.1|	-	6.3e-08	33.1	0.0	1.3e-06	28.8	0.0	2.2	2	0	0	2	2	2	1	Miro-like	protein
GTP_EFTU	PF00009.22	gi|124028000|ref|YP_001013320.1|	-	9.2e-08	31.7	0.1	3.5e-06	26.5	0.1	2.3	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
cobW	PF02492.14	gi|124028000|ref|YP_001013320.1|	-	2.6e-05	23.7	0.2	0.0029	17.0	0.0	2.6	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
Dynamin_N	PF00350.18	gi|124028000|ref|YP_001013320.1|	-	2.8e-05	23.9	0.1	0.0051	16.6	0.0	2.3	1	1	1	2	2	2	1	Dynamin	family
Arf	PF00025.16	gi|124028000|ref|YP_001013320.1|	-	4.8e-05	22.6	0.1	0.00068	18.9	0.0	2.6	1	1	1	2	2	2	1	ADP-ribosylation	factor	family
PduV-EutP	PF10662.4	gi|124028000|ref|YP_001013320.1|	-	0.00011	21.6	0.0	0.00028	20.4	0.0	1.7	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_28	PF13521.1	gi|124028000|ref|YP_001013320.1|	-	0.00034	20.6	0.0	0.0017	18.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124028000|ref|YP_001013320.1|	-	0.011	15.7	0.1	0.036	14.0	0.0	1.9	2	1	0	2	2	2	0	AAA	ATPase	domain
GTP-bdg_N	PF13167.1	gi|124028000|ref|YP_001013320.1|	-	0.012	15.7	0.0	0.025	14.7	0.0	1.5	1	0	0	1	1	1	0	GTP-binding	GTPase	N-terminal
ABC_tran	PF00005.22	gi|124028000|ref|YP_001013320.1|	-	0.018	15.3	0.0	0.046	14.0	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
NOG1	PF06858.9	gi|124028000|ref|YP_001013320.1|	-	0.018	14.9	0.0	0.044	13.6	0.0	1.6	1	0	0	1	1	1	0	Nucleolar	GTP-binding	protein	1	(NOG1)
DUF2428	PF10350.4	gi|124028000|ref|YP_001013320.1|	-	0.031	13.2	0.0	0.055	12.4	0.0	1.3	1	0	0	1	1	1	0	Putative	death-receptor	fusion	protein	(DUF2428)
SRPRB	PF09439.5	gi|124028000|ref|YP_001013320.1|	-	0.032	13.4	0.0	0.069	12.3	0.0	1.5	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
ATP_bind_1	PF03029.12	gi|124028000|ref|YP_001013320.1|	-	0.14	11.6	0.1	4	6.9	0.0	2.4	2	1	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
HTH_3	PF01381.17	gi|124028001|ref|YP_001013321.1|	-	4.4e-12	45.6	0.7	8.7e-12	44.7	0.5	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|124028001|ref|YP_001013321.1|	-	1.1e-11	44.7	2.8	1.1e-11	44.7	2.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|124028001|ref|YP_001013321.1|	-	1.8e-09	37.4	0.0	3.5e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|124028001|ref|YP_001013321.1|	-	1e-05	25.0	0.5	2.3e-05	23.9	0.4	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|124028001|ref|YP_001013321.1|	-	0.036	13.8	0.1	0.066	13.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DZR	PF12773.2	gi|124028001|ref|YP_001013321.1|	-	0.037	13.8	0.2	0.06	13.1	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
LIM	PF00412.17	gi|124028001|ref|YP_001013321.1|	-	0.063	13.3	0.2	0.1	12.6	0.1	1.3	1	0	0	1	1	1	0	LIM	domain
Zn_ribbon_recom	PF13408.1	gi|124028001|ref|YP_001013321.1|	-	0.094	12.9	0.8	13	6.1	0.0	2.5	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Ribosomal_L37ae	PF01780.14	gi|124028001|ref|YP_001013321.1|	-	0.92	9.4	4.6	6.3	6.7	0.3	2.5	2	1	0	2	2	2	0	Ribosomal	L37ae	protein	family
AAA	PF00004.24	gi|124028002|ref|YP_001013322.1|	-	1.1e-43	148.5	0.0	5.6e-43	146.3	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|124028002|ref|YP_001013322.1|	-	1.2e-08	35.0	0.0	3.1e-08	33.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.9	gi|124028002|ref|YP_001013322.1|	-	4e-07	29.8	0.1	2.4e-06	27.2	0.0	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|124028002|ref|YP_001013322.1|	-	2e-06	27.9	0.2	8e-06	25.9	0.0	2.0	2	1	0	2	2	1	1	AAA	ATPase	domain
bZIP_1	PF00170.16	gi|124028002|ref|YP_001013322.1|	-	1.1e-05	25.2	0.8	2.4e-05	24.1	0.6	1.4	1	0	0	1	1	1	1	bZIP	transcription	factor
AAA_22	PF13401.1	gi|124028002|ref|YP_001013322.1|	-	1.3e-05	25.3	1.3	0.00056	20.0	0.1	2.7	2	1	0	2	2	1	1	AAA	domain
RuvB_N	PF05496.7	gi|124028002|ref|YP_001013322.1|	-	2.6e-05	23.4	0.0	4.6e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_17	PF13207.1	gi|124028002|ref|YP_001013322.1|	-	2.7e-05	24.9	0.1	0.0001	23.0	0.0	2.1	2	1	0	2	2	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|124028002|ref|YP_001013322.1|	-	8.1e-05	22.7	0.0	0.00046	20.3	0.0	2.2	3	0	0	3	3	1	1	RNA	helicase
DUF815	PF05673.8	gi|124028002|ref|YP_001013322.1|	-	9.4e-05	21.4	0.0	0.00023	20.2	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_14	PF13173.1	gi|124028002|ref|YP_001013322.1|	-	0.00061	19.6	0.0	0.0012	18.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|124028002|ref|YP_001013322.1|	-	0.00069	19.6	0.2	0.0019	18.2	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|124028002|ref|YP_001013322.1|	-	0.0017	17.5	0.0	0.0031	16.7	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
Zeta_toxin	PF06414.7	gi|124028002|ref|YP_001013322.1|	-	0.0018	17.4	0.0	0.0038	16.3	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
Arch_ATPase	PF01637.13	gi|124028002|ref|YP_001013322.1|	-	0.0046	16.6	0.0	0.019	14.6	0.0	2.1	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|124028002|ref|YP_001013322.1|	-	0.0048	16.6	0.1	0.013	15.2	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|124028002|ref|YP_001013322.1|	-	0.0052	16.2	0.0	0.013	14.8	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|124028002|ref|YP_001013322.1|	-	0.0066	16.7	0.0	0.018	15.3	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|124028002|ref|YP_001013322.1|	-	0.01	15.5	0.1	0.18	11.4	0.0	2.3	1	1	1	2	2	2	0	NACHT	domain
AAA_3	PF07726.6	gi|124028002|ref|YP_001013322.1|	-	0.011	15.3	0.0	0.02	14.4	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|124028002|ref|YP_001013322.1|	-	0.012	15.4	0.0	0.034	14.0	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.13	gi|124028002|ref|YP_001013322.1|	-	0.021	14.4	0.0	0.053	13.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	dnaA	protein
AAA_24	PF13479.1	gi|124028002|ref|YP_001013322.1|	-	0.024	14.2	0.0	0.043	13.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
TIP49	PF06068.8	gi|124028002|ref|YP_001013322.1|	-	0.031	13.0	0.0	0.049	12.3	0.0	1.3	1	0	0	1	1	1	0	TIP49	C-terminus
Med21	PF11221.3	gi|124028002|ref|YP_001013322.1|	-	0.039	13.9	1.2	0.077	12.9	0.8	1.4	1	0	0	1	1	1	0	Subunit	21	of	Mediator	complex
ABC_tran	PF00005.22	gi|124028002|ref|YP_001013322.1|	-	0.048	13.9	0.0	0.099	12.9	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.1	gi|124028002|ref|YP_001013322.1|	-	0.051	12.9	2.6	0.28	10.5	0.1	2.7	2	1	1	3	3	3	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|124028002|ref|YP_001013322.1|	-	0.054	12.9	0.0	0.28	10.6	0.0	1.9	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NTPase_1	PF03266.10	gi|124028002|ref|YP_001013322.1|	-	0.056	13.1	0.7	2.7	7.6	0.0	3.4	3	1	1	4	4	4	0	NTPase
NB-ARC	PF00931.17	gi|124028002|ref|YP_001013322.1|	-	0.057	12.2	0.0	0.1	11.4	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
V-SNARE	PF05008.10	gi|124028002|ref|YP_001013322.1|	-	0.067	13.3	1.7	0.14	12.3	1.1	1.5	1	0	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
KaiC	PF06745.8	gi|124028002|ref|YP_001013322.1|	-	0.067	12.2	0.4	0.29	10.2	0.0	2.3	3	0	0	3	3	3	0	KaiC
Sigma54_activat	PF00158.21	gi|124028002|ref|YP_001013322.1|	-	0.084	12.3	0.1	0.78	9.1	0.0	2.3	2	1	0	2	2	2	0	Sigma-54	interaction	domain
P4Ha_N	PF08336.6	gi|124028002|ref|YP_001013322.1|	-	0.11	12.3	0.3	0.27	11.0	0.2	1.5	1	0	0	1	1	1	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
AAA_21	PF13304.1	gi|124028002|ref|YP_001013322.1|	-	0.2	11.5	0.0	24	4.7	0.0	2.7	2	1	0	3	3	3	0	AAA	domain
Parvo_NS1	PF01057.12	gi|124028002|ref|YP_001013322.1|	-	0.21	10.4	0.0	0.38	9.5	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
DUF3287	PF11690.3	gi|124028002|ref|YP_001013322.1|	-	1.8	8.6	4.2	1.1	9.3	1.4	1.8	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3287)
CxxCxxCC	PF03692.10	gi|124028003|ref|YP_001013323.1|	-	0.0025	18.2	0.9	0.0046	17.4	0.6	1.4	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
SprT-like	PF10263.4	gi|124028004|ref|YP_001013324.1|	-	0.022	14.4	0.0	0.023	14.3	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
PhoH	PF02562.11	gi|124028005|ref|YP_001013325.1|	-	1.7e-50	171.1	0.0	2.2e-50	170.7	0.0	1.1	1	0	0	1	1	1	1	PhoH-like	protein
KH_5	PF13184.1	gi|124028005|ref|YP_001013325.1|	-	1.1e-07	31.5	0.1	5.7e-06	26.0	0.0	2.5	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_2	PF07650.12	gi|124028005|ref|YP_001013325.1|	-	3.4e-07	29.7	0.3	5.2e-06	25.9	0.2	2.4	1	1	1	2	2	2	1	KH	domain
KH_1	PF00013.24	gi|124028005|ref|YP_001013325.1|	-	3.2e-05	23.5	0.1	0.00015	21.3	0.0	2.1	2	0	0	2	2	2	1	KH	domain
KH_3	PF13014.1	gi|124028005|ref|YP_001013325.1|	-	0.0026	17.3	0.1	0.0074	15.9	0.1	1.8	1	0	0	1	1	1	1	KH	domain
AAA_30	PF13604.1	gi|124028005|ref|YP_001013325.1|	-	0.015	14.9	0.0	0.025	14.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|124028005|ref|YP_001013325.1|	-	0.024	14.9	0.0	0.05	13.9	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
DEAD	PF00270.24	gi|124028005|ref|YP_001013325.1|	-	0.026	14.0	0.0	0.037	13.5	0.0	1.2	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_17	PF13207.1	gi|124028005|ref|YP_001013325.1|	-	0.24	12.2	2.6	0.69	10.7	0.4	2.6	2	2	0	2	2	2	0	AAA	domain
TYW3	PF02676.9	gi|124028006|ref|YP_001013326.1|	-	2.5e-48	163.9	0.0	2.9e-48	163.7	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	TYW3
CBS	PF00571.23	gi|124028007|ref|YP_001013327.1|	-	4e-41	138.5	5.3	1.8e-20	72.4	0.1	2.2	2	0	0	2	2	2	2	CBS	domain
DUF3659	PF12396.3	gi|124028007|ref|YP_001013327.1|	-	0.018	14.6	1.2	0.86	9.3	0.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
GTP_cyclohydro2	PF00925.15	gi|124028007|ref|YP_001013327.1|	-	0.02	14.1	0.0	0.55	9.4	0.0	2.0	1	1	1	2	2	2	0	GTP	cyclohydrolase	II
DisA_N	PF02457.11	gi|124028007|ref|YP_001013327.1|	-	0.047	12.8	0.1	2.6	7.2	0.0	2.2	2	0	0	2	2	2	0	DisA	bacterial	checkpoint	controller	nucleotide-binding
GAF	PF01590.21	gi|124028007|ref|YP_001013327.1|	-	0.049	13.7	0.0	0.068	13.2	0.0	1.2	1	0	0	1	1	1	0	GAF	domain
GAF_2	PF13185.1	gi|124028007|ref|YP_001013327.1|	-	0.14	12.6	0.0	0.18	12.2	0.0	1.1	1	0	0	1	1	1	0	GAF	domain
CBS	PF00571.23	gi|124028008|ref|YP_001013328.1|	-	6.5e-40	134.6	13.5	1.7e-13	50.0	0.6	4.1	4	0	0	4	4	4	4	CBS	domain
GAF_2	PF13185.1	gi|124028008|ref|YP_001013328.1|	-	0.0023	18.4	0.4	0.59	10.6	0.0	3.4	2	1	1	3	3	3	1	GAF	domain
H_kinase_N	PF12282.3	gi|124028008|ref|YP_001013328.1|	-	0.0023	17.5	0.3	0.4	10.2	0.0	3.0	1	1	2	3	3	3	1	Signal	transduction	histidine	kinase
CBS	PF00571.23	gi|124028009|ref|YP_001013329.1|	-	1.7e-53	178.1	13.3	8.7e-17	60.6	0.1	4.2	4	0	0	4	4	4	4	CBS	domain
TPP_enzyme_C	PF02775.16	gi|124028009|ref|YP_001013329.1|	-	0.032	13.8	0.1	0.065	12.8	0.1	1.5	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Thioredoxin_3	PF13192.1	gi|124028009|ref|YP_001013329.1|	-	0.26	11.1	4.0	2.7	7.8	0.1	3.1	3	0	0	3	3	3	0	Thioredoxin	domain
CBS	PF00571.23	gi|124028010|ref|YP_001013330.1|	-	1e-61	204.4	12.2	7.2e-22	76.9	0.3	4.1	4	0	0	4	4	4	4	CBS	domain
Trypsin_2	PF13365.1	gi|124028010|ref|YP_001013330.1|	-	0.00016	21.6	0.0	0.00047	20.1	0.0	1.7	2	1	0	2	2	2	1	Trypsin-like	peptidase	domain
DUF2786	PF10979.3	gi|124028010|ref|YP_001013330.1|	-	0.0036	16.9	2.8	5.8	6.7	0.0	3.3	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2786)
Peptidase_S32	PF05579.8	gi|124028010|ref|YP_001013330.1|	-	0.02	13.8	0.0	0.039	12.9	0.0	1.4	1	0	0	1	1	1	0	Equine	arteritis	virus	serine	endopeptidase	S32
PB1	PF00564.19	gi|124028010|ref|YP_001013330.1|	-	0.051	13.2	0.0	17	5.1	0.0	3.0	2	1	1	3	3	3	0	PB1	domain
Peptidase_S29	PF02907.10	gi|124028010|ref|YP_001013330.1|	-	0.13	11.7	0.0	0.42	10.1	0.0	1.8	2	0	0	2	2	2	0	Hepatitis	C	virus	NS3	protease
CBS	PF00571.23	gi|124028011|ref|YP_001013331.1|	-	1e-47	159.6	16.0	1.3e-13	50.4	0.0	4.1	4	0	0	4	4	4	4	CBS	domain
IMCp	PF12314.3	gi|124028011|ref|YP_001013331.1|	-	0.0084	16.2	1.1	0.032	14.3	0.8	2.0	1	1	0	1	1	1	1	Inner	membrane	complex	protein
Ribosomal_L9_C	PF03948.9	gi|124028011|ref|YP_001013331.1|	-	0.0096	15.9	0.0	13	5.9	0.0	3.7	4	0	0	4	4	4	1	Ribosomal	protein	L9,	C-terminal	domain
Acetyltransf_10	PF13673.1	gi|124028011|ref|YP_001013331.1|	-	0.017	15.2	0.0	0.58	10.2	0.0	2.8	2	1	1	3	3	3	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|124028011|ref|YP_001013331.1|	-	0.019	15.0	0.1	0.84	9.8	0.0	3.3	3	1	0	4	4	4	0	Acetyltransferase	(GNAT)	domain
DUF3516	PF12029.3	gi|124028011|ref|YP_001013331.1|	-	0.041	12.6	0.0	0.057	12.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3516)
Cache_3	PF14827.1	gi|124028011|ref|YP_001013331.1|	-	0.32	10.8	5.3	0.77	9.6	0.0	3.8	5	1	0	5	5	5	0	Sensory	domain	of	two-component	sensor	kinase
Mut7-C	PF01927.11	gi|124028012|ref|YP_001013332.1|	-	3.9e-49	166.3	0.0	4.7e-49	166.1	0.0	1.1	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
Rubredoxin	PF00301.15	gi|124028012|ref|YP_001013332.1|	-	0.033	14.0	1.0	0.057	13.2	0.7	1.4	1	0	0	1	1	1	0	Rubredoxin
Rad50_zn_hook	PF04423.9	gi|124028012|ref|YP_001013332.1|	-	0.044	13.2	0.1	0.09	12.2	0.1	1.5	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Rpr2	PF04032.11	gi|124028012|ref|YP_001013332.1|	-	0.051	13.4	0.0	0.12	12.2	0.0	1.7	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Sulfatase	PF00884.18	gi|124028012|ref|YP_001013332.1|	-	0.15	11.2	0.0	0.24	10.5	0.0	1.3	1	0	0	1	1	1	0	Sulfatase
DUF188	PF02639.9	gi|124028012|ref|YP_001013332.1|	-	0.16	11.4	0.0	0.24	10.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
zf-IS66	PF13005.2	gi|124028012|ref|YP_001013332.1|	-	0.86	9.6	5.3	0.51	10.3	1.0	2.5	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
SNARE_assoc	PF09335.6	gi|124028013|ref|YP_001013333.1|	-	1.2e-11	44.8	9.5	1.2e-11	44.8	6.6	2.2	2	1	0	2	2	2	1	SNARE	associated	Golgi	protein
UPF0016	PF01169.14	gi|124028013|ref|YP_001013333.1|	-	1.4	9.0	10.6	9	6.5	3.7	3.3	2	1	1	3	3	3	0	Uncharacterized	protein	family	UPF0016
Helicase_RecD	PF05127.9	gi|124028015|ref|YP_001013335.1|	-	3.9e-38	130.8	0.0	8e-38	129.8	0.0	1.5	2	0	0	2	2	2	1	Helicase
GNAT_acetyltr_2	PF13718.1	gi|124028015|ref|YP_001013335.1|	-	4.7e-33	114.1	0.2	7.5e-31	106.9	0.1	3.0	1	1	0	1	1	1	1	GNAT	acetyltransferase	2
DUF1726	PF08351.6	gi|124028015|ref|YP_001013335.1|	-	5.6e-09	35.5	0.0	1.2e-08	34.5	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_7	PF13508.1	gi|124028015|ref|YP_001013335.1|	-	2.5e-06	27.5	0.0	6.7e-06	26.1	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.19	gi|124028015|ref|YP_001013335.1|	-	9.1e-06	25.6	0.6	4.3e-05	23.4	0.0	2.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
AAA_16	PF13191.1	gi|124028015|ref|YP_001013335.1|	-	4.2e-05	23.6	0.4	0.0014	18.6	0.1	2.8	2	1	0	2	2	2	1	AAA	ATPase	domain
Acetyltransf_10	PF13673.1	gi|124028015|ref|YP_001013335.1|	-	0.0016	18.5	0.0	0.0075	16.3	0.0	2.2	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
AAA_30	PF13604.1	gi|124028015|ref|YP_001013335.1|	-	0.0077	15.8	0.0	0.036	13.6	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
Peptidase_M42	PF05343.9	gi|124028016|ref|YP_001013336.1|	-	1.3e-102	342.4	0.1	1.6e-102	342.2	0.1	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|124028016|ref|YP_001013336.1|	-	3.5e-10	39.6	0.1	5.4e-10	39.0	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.12	gi|124028016|ref|YP_001013336.1|	-	0.0051	16.5	0.0	0.0083	15.8	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M28
Peptidase_M18	PF02127.10	gi|124028016|ref|YP_001013336.1|	-	0.018	13.5	0.0	0.14	10.6	0.0	2.2	2	1	1	3	3	3	0	Aminopeptidase	I	zinc	metalloprotease	(M18)
Carboxyl_trans	PF01039.17	gi|124028017|ref|YP_001013337.1|	-	6.6e-189	628.3	0.0	7.5e-189	628.1	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.6	gi|124028017|ref|YP_001013337.1|	-	3.3e-05	23.2	3.2	4.2e-05	22.8	0.1	2.1	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
Biotin_lipoyl	PF00364.17	gi|124028018|ref|YP_001013338.1|	-	6.8e-15	54.4	0.3	6.8e-15	54.4	0.2	1.6	2	0	0	2	2	2	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.1	gi|124028018|ref|YP_001013338.1|	-	8.1e-06	25.4	0.1	0.0016	18.0	0.0	2.7	3	0	0	3	3	3	1	Biotin-lipoyl	like
RnfC_N	PF13375.1	gi|124028018|ref|YP_001013338.1|	-	0.0011	18.6	0.3	0.0022	17.6	0.2	1.5	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
HlyD_2	PF12700.2	gi|124028018|ref|YP_001013338.1|	-	0.0013	17.9	0.3	0.26	10.4	0.0	2.4	2	1	1	3	3	3	2	HlyD	family	secretion	protein
DUF2118	PF09891.4	gi|124028018|ref|YP_001013338.1|	-	0.0019	17.8	0.3	0.0041	16.8	0.2	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
GCV_H	PF01597.14	gi|124028018|ref|YP_001013338.1|	-	0.0032	17.1	0.9	0.0064	16.1	0.1	1.9	2	1	1	3	3	3	1	Glycine	cleavage	H-protein
HlyD_3	PF13437.1	gi|124028018|ref|YP_001013338.1|	-	0.072	13.4	0.0	16	5.8	0.0	2.6	3	0	0	3	3	3	0	HlyD	family	secretion	protein
QRPTase_N	PF02749.11	gi|124028018|ref|YP_001013338.1|	-	0.098	12.4	0.2	7	6.5	0.0	2.6	2	1	1	3	3	3	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PYNP_C	PF07831.8	gi|124028018|ref|YP_001013338.1|	-	0.1	12.0	0.8	1.2	8.6	0.1	2.4	3	0	0	3	3	3	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
CPSase_L_D2	PF02786.12	gi|124028019|ref|YP_001013339.1|	-	3.3e-65	219.3	0.1	4.5e-65	218.8	0.1	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_C	PF02785.14	gi|124028019|ref|YP_001013339.1|	-	2.1e-36	124.1	0.0	3.9e-36	123.2	0.0	1.5	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
CPSase_L_chain	PF00289.17	gi|124028019|ref|YP_001013339.1|	-	5.2e-29	100.5	0.0	1.1e-28	99.5	0.0	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|124028019|ref|YP_001013339.1|	-	1.1e-21	77.4	0.1	1.9e-21	76.6	0.1	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|124028019|ref|YP_001013339.1|	-	1.1e-15	57.2	0.0	4.1e-08	32.3	0.0	2.2	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|124028019|ref|YP_001013339.1|	-	5.9e-11	42.0	0.0	9.9e-11	41.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|124028019|ref|YP_001013339.1|	-	1.1e-09	37.9	0.0	2.1e-09	37.0	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.1	gi|124028019|ref|YP_001013339.1|	-	2.4e-08	33.5	0.0	5.9e-08	32.2	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
RimK	PF08443.6	gi|124028019|ref|YP_001013339.1|	-	1.6e-06	27.7	0.0	7.3e-06	25.5	0.0	1.9	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
GARS_A	PF01071.14	gi|124028019|ref|YP_001013339.1|	-	4.7e-06	26.2	0.0	1.4e-05	24.7	0.0	1.8	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_3	PF02655.9	gi|124028019|ref|YP_001013339.1|	-	3.3e-05	23.8	0.0	5.5e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.5	gi|124028019|ref|YP_001013339.1|	-	6.7e-05	22.3	0.0	0.00012	21.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
Glyoxalase_2	PF12681.2	gi|124028019|ref|YP_001013339.1|	-	0.054	14.0	0.1	0.96	10.0	0.0	2.6	2	0	0	2	2	2	0	Glyoxalase-like	domain
TrkA_N	PF02254.13	gi|124028019|ref|YP_001013339.1|	-	0.078	12.9	0.1	0.26	11.3	0.0	1.9	2	0	0	2	2	2	0	TrkA-N	domain
BPL_LplA_LipB	PF03099.14	gi|124028020|ref|YP_001013340.1|	-	4.8e-13	49.2	0.0	8.1e-13	48.4	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
BPL_C	PF02237.12	gi|124028020|ref|YP_001013340.1|	-	8.8e-07	28.5	0.0	1.7e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	Biotin	protein	ligase	C	terminal	domain
dUTPase	PF00692.14	gi|124028021|ref|YP_001013341.1|	-	2.4e-16	59.3	0.0	3.6e-16	58.7	0.0	1.1	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.6	gi|124028021|ref|YP_001013341.1|	-	0.00079	17.9	0.0	0.0015	17.0	0.0	1.4	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
Desulfoferrodox	PF01880.13	gi|124028022|ref|YP_001013342.1|	-	1.3e-25	89.4	0.0	1.6e-25	89.1	0.0	1.1	1	0	0	1	1	1	1	Desulfoferrodoxin
SoxY	PF13501.1	gi|124028022|ref|YP_001013342.1|	-	0.001	19.1	0.0	0.0014	18.6	0.0	1.2	1	0	0	1	1	1	1	Sulfur	oxidation	protein	SoxY
MFS_1	PF07690.11	gi|124028023|ref|YP_001013343.1|	-	9.2e-32	110.1	33.7	3.8e-17	62.0	13.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|124028023|ref|YP_001013343.1|	-	2.3e-10	40.1	1.3	0.00037	20.2	0.0	3.7	3	0	0	3	3	3	3	MFS_1	like	family
LacY_symp	PF01306.14	gi|124028023|ref|YP_001013343.1|	-	0.00089	17.9	5.8	0.0043	15.6	0.0	3.1	3	1	0	3	3	3	1	LacY	proton/sugar	symporter
Nuc_H_symport	PF03825.11	gi|124028023|ref|YP_001013343.1|	-	4.1	6.0	11.8	0.051	12.3	0.2	2.3	2	1	0	2	2	2	0	Nucleoside	H+	symporter
Resolvase	PF00239.16	gi|124028026|ref|YP_001013346.1|	-	9.6e-08	31.9	0.0	1.5e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_23	PF13384.1	gi|124028026|ref|YP_001013346.1|	-	0.00013	21.5	0.1	0.00032	20.2	0.1	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_psq	PF05225.11	gi|124028026|ref|YP_001013346.1|	-	0.00016	21.1	0.0	0.00025	20.5	0.0	1.3	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_Tnp_ISL3	PF13542.1	gi|124028026|ref|YP_001013346.1|	-	0.00041	19.4	0.0	0.00062	18.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_3	PF01381.17	gi|124028026|ref|YP_001013346.1|	-	0.0011	18.7	0.1	0.0022	17.8	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_8	PF02954.14	gi|124028026|ref|YP_001013346.1|	-	0.0012	18.2	0.4	0.0012	18.2	0.2	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	Fis	family
HTH_28	PF13518.1	gi|124028026|ref|YP_001013346.1|	-	0.0018	18.1	0.2	0.0052	16.7	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|124028026|ref|YP_001013346.1|	-	0.004	16.6	1.1	0.0052	16.3	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|124028026|ref|YP_001013346.1|	-	0.0086	15.5	2.5	0.05	13.0	0.0	2.5	3	0	0	3	3	3	1	Sigma-70,	region	4
DUF2089	PF09862.4	gi|124028026|ref|YP_001013346.1|	-	0.016	14.9	0.0	0.026	14.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
HTH_31	PF13560.1	gi|124028026|ref|YP_001013346.1|	-	0.016	15.3	8.4	0.64	10.2	5.8	2.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_AraC	PF00165.18	gi|124028026|ref|YP_001013346.1|	-	0.019	14.7	0.0	0.029	14.1	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
CENP-B_N	PF04218.8	gi|124028026|ref|YP_001013346.1|	-	0.033	13.6	0.2	0.16	11.4	0.0	2.0	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
LacI	PF00356.16	gi|124028026|ref|YP_001013346.1|	-	0.039	13.5	0.0	0.094	12.3	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HTH_17	PF12728.2	gi|124028026|ref|YP_001013346.1|	-	0.043	14.0	0.1	0.11	12.7	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_30	PF13556.1	gi|124028026|ref|YP_001013346.1|	-	0.045	13.3	0.0	0.088	12.4	0.0	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
RWP-RK	PF02042.10	gi|124028026|ref|YP_001013346.1|	-	0.073	12.9	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	RWP-RK	domain
Sigma70_r4	PF04545.11	gi|124028026|ref|YP_001013346.1|	-	0.074	12.3	5.3	0.33	10.3	0.1	2.8	3	0	0	3	3	3	0	Sigma-70,	region	4
HTH_7	PF02796.10	gi|124028026|ref|YP_001013346.1|	-	0.22	11.4	1.5	0.47	10.3	0.2	2.1	2	1	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_29	PF13551.1	gi|124028026|ref|YP_001013346.1|	-	0.25	11.4	4.1	0.95	9.6	0.0	2.5	1	1	2	3	3	3	0	Winged	helix-turn	helix
Exosortase_EpsH	PF09721.5	gi|124028029|ref|YP_001013349.1|	-	1.6e-08	34.0	16.9	2.2e-08	33.6	11.7	1.1	1	0	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
DUF4407	PF14362.1	gi|124028029|ref|YP_001013349.1|	-	1.2	8.0	3.9	1.8	7.4	2.7	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Flu_M2	PF00599.12	gi|124028029|ref|YP_001013349.1|	-	2.3	8.0	5.2	15	5.4	0.0	2.7	3	1	0	3	3	3	0	Influenza	Matrix	protein	(M2)
DUF1440	PF07274.7	gi|124028029|ref|YP_001013349.1|	-	8.2	6.4	9.5	5.2	7.0	0.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1440)
Glyco_tranf_2_3	PF13641.1	gi|124028030|ref|YP_001013350.1|	-	5.6e-24	85.1	0.0	7.3e-24	84.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|124028030|ref|YP_001013350.1|	-	3.1e-17	62.9	1.3	6.3e-17	61.9	0.9	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.21	gi|124028030|ref|YP_001013350.1|	-	7.5e-17	61.5	0.0	1.2e-16	60.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|124028030|ref|YP_001013350.1|	-	1.1e-12	47.6	0.0	1.7e-12	47.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Cellulose_synt	PF03552.9	gi|124028030|ref|YP_001013350.1|	-	0.00097	17.5	2.2	0.21	9.8	0.4	3.1	3	0	0	3	3	3	1	Cellulose	synthase
Glyco_tranf_2_2	PF10111.4	gi|124028030|ref|YP_001013350.1|	-	0.0026	16.8	0.0	0.0035	16.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Sulfolobus_pRN	PF05584.6	gi|124028031|ref|YP_001013351.1|	-	0.00019	21.3	0.2	0.00049	20.0	0.1	1.8	2	0	0	2	2	2	1	Sulfolobus	plasmid	regulatory	protein
HTH_20	PF12840.2	gi|124028031|ref|YP_001013351.1|	-	0.0006	19.5	0.0	0.02	14.6	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|124028031|ref|YP_001013351.1|	-	0.0096	15.5	0.1	0.022	14.4	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.1	gi|124028031|ref|YP_001013351.1|	-	0.088	12.8	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Laminin_G_3	PF13385.1	gi|124028032|ref|YP_001013352.1|	-	0.073	13.2	0.1	2.7	8.1	0.0	2.6	1	1	0	2	2	2	0	Concanavalin	A-like	lectin/glucanases	superfamily
DUF4143	PF13635.1	gi|124028033|ref|YP_001013353.1|	-	0.00037	20.5	0.1	0.00047	20.2	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
Erf4	PF10256.4	gi|124028033|ref|YP_001013353.1|	-	0.094	12.5	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Golgin	subfamily	A	member	7/ERF4	family
NAS	PF03059.11	gi|124028033|ref|YP_001013353.1|	-	0.11	11.6	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	Nicotianamine	synthase	protein
VIT1	PF01988.14	gi|124028034|ref|YP_001013354.1|	-	6.3e-17	61.7	21.9	1.7e-10	40.7	4.4	3.0	2	1	1	3	3	3	2	VIT	family
Rubrerythrin	PF02915.12	gi|124028034|ref|YP_001013354.1|	-	2e-06	28.1	8.7	1.7e-05	25.1	5.7	2.2	1	1	0	1	1	1	1	Rubrerythrin
SPC25	PF06703.6	gi|124028034|ref|YP_001013354.1|	-	0.0018	17.9	0.6	0.0042	16.6	0.1	1.7	1	1	1	2	2	2	1	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
Ferritin_2	PF13668.1	gi|124028034|ref|YP_001013354.1|	-	0.0051	16.7	0.1	0.25	11.2	0.0	2.3	1	1	0	2	2	2	1	Ferritin-like	domain
COQ7	PF03232.8	gi|124028034|ref|YP_001013354.1|	-	0.024	14.1	0.2	3	7.2	0.0	2.4	2	1	0	2	2	2	0	Ubiquinone	biosynthesis	protein	COQ7
DoxX_2	PF13564.1	gi|124028034|ref|YP_001013354.1|	-	0.029	14.3	8.2	0.032	14.1	4.8	1.8	1	1	0	1	1	1	0	DoxX-like	family
Ferritin	PF00210.19	gi|124028034|ref|YP_001013354.1|	-	0.059	13.1	3.3	0.64	9.7	0.3	2.6	2	1	0	2	2	2	0	Ferritin-like	domain
FxsA	PF04186.8	gi|124028034|ref|YP_001013354.1|	-	0.18	11.3	3.0	0.42	10.2	2.1	1.7	1	0	0	1	1	1	0	FxsA	cytoplasmic	membrane	protein
Nitroreductase	PF00881.19	gi|124028035|ref|YP_001013355.1|	-	6.2e-32	110.6	0.0	7.6e-32	110.4	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
Peptidase_M28	PF04389.12	gi|124028036|ref|YP_001013356.1|	-	1.5e-08	34.6	0.0	8.4e-08	32.1	0.0	2.0	1	1	0	1	1	1	1	Peptidase	family	M28
DUF2172	PF09940.4	gi|124028036|ref|YP_001013356.1|	-	3.8e-07	28.8	0.0	5.5e-07	28.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2172)
DUF2499	PF10693.4	gi|124028036|ref|YP_001013356.1|	-	0.16	12.0	0.0	0.3	11.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2499)
tRNA-synt_1d	PF00750.14	gi|124028037|ref|YP_001013357.1|	-	1.9e-52	178.2	0.0	2e-33	115.7	0.0	2.2	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|124028037|ref|YP_001013357.1|	-	1.5e-24	86.2	0.1	1.5e-24	86.2	0.1	2.4	3	0	0	3	3	3	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.11	gi|124028037|ref|YP_001013357.1|	-	6.1e-09	36.3	0.0	1.9e-08	34.6	0.0	1.9	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1	PF00133.17	gi|124028037|ref|YP_001013357.1|	-	0.005	14.9	0.7	0.65	7.9	0.0	2.9	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|124028037|ref|YP_001013357.1|	-	0.0082	14.8	0.0	1.3	7.5	0.1	3.0	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|124028037|ref|YP_001013357.1|	-	0.14	11.2	0.0	0.49	9.4	0.0	1.9	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
DUF167	PF02594.11	gi|124028038|ref|YP_001013358.1|	-	7.6e-11	41.7	0.0	9.6e-11	41.4	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	ACR,	YggU	family	COG1872
La	PF05383.12	gi|124028038|ref|YP_001013358.1|	-	0.00029	20.5	0.1	2.8	7.7	0.1	3.0	2	1	0	2	2	2	2	La	domain
CBS	PF00571.23	gi|124028039|ref|YP_001013359.1|	-	4.5e-18	64.7	2.7	1.1e-05	25.1	0.0	4.3	4	0	0	4	4	4	4	CBS	domain
DUF2283	PF10049.4	gi|124028040|ref|YP_001013360.1|	-	1e-10	41.3	0.5	1.2e-10	41.0	0.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2283)
Lectin_legB	PF00139.14	gi|124028040|ref|YP_001013360.1|	-	0.047	13.0	0.0	0.047	13.0	0.0	1.1	1	0	0	1	1	1	0	Legume	lectin	domain
DUF3876	PF12992.2	gi|124028040|ref|YP_001013360.1|	-	0.053	13.4	0.1	0.11	12.5	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3876)
AdoMet_dc	PF02675.10	gi|124028041|ref|YP_001013361.1|	-	1.7e-35	121.1	0.0	2e-35	120.9	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
PaaX	PF07848.7	gi|124028043|ref|YP_001013363.1|	-	0.0086	16.0	0.1	0.017	15.0	0.0	1.5	1	0	0	1	1	1	1	PaaX-like	protein
DUF4095	PF13338.1	gi|124028043|ref|YP_001013363.1|	-	0.021	14.9	0.1	0.03	14.4	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4095)
DUF3412	PF11892.3	gi|124028043|ref|YP_001013363.1|	-	0.14	11.9	0.0	0.23	11.3	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3412)
DUF131	PF01998.12	gi|124028045|ref|YP_001013365.1|	-	3.5e-16	58.2	9.8	3.5e-16	58.2	6.8	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
Neurensin	PF14927.1	gi|124028045|ref|YP_001013365.1|	-	0.0016	17.7	5.0	0.012	15.0	0.3	2.0	2	0	0	2	2	2	2	Neurensin
DUF3185	PF11381.3	gi|124028045|ref|YP_001013365.1|	-	0.28	10.9	8.8	0.67	9.7	1.8	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
DUF2614	PF11023.3	gi|124028045|ref|YP_001013365.1|	-	0.6	9.9	6.3	0.3	10.8	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2614)
SPW	PF03779.9	gi|124028045|ref|YP_001013365.1|	-	1.8	8.0	8.8	0.48	9.8	0.7	2.2	2	0	0	2	2	2	0	SPW	repeat
Got1	PF04178.7	gi|124028045|ref|YP_001013365.1|	-	3.8	7.6	9.7	7.3	6.7	2.4	2.1	2	0	0	2	2	2	0	Got1/Sft2-like	family
OppC_N	PF12911.2	gi|124028045|ref|YP_001013365.1|	-	3.9	6.9	12.1	1.4	8.3	2.9	2.3	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF1469	PF07332.6	gi|124028045|ref|YP_001013365.1|	-	8.1	6.2	8.4	7.6	6.2	0.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
DUF872	PF05915.7	gi|124028045|ref|YP_001013365.1|	-	8.7	6.2	11.7	0.32	10.8	3.0	1.9	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Methyltransf_18	PF12847.2	gi|124028046|ref|YP_001013366.1|	-	4.3e-09	36.9	0.1	9e-09	35.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|124028046|ref|YP_001013366.1|	-	2.9e-08	33.2	0.0	5.1e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|124028046|ref|YP_001013366.1|	-	1.6e-07	31.0	0.0	1.7e-07	30.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028046|ref|YP_001013366.1|	-	1.6e-07	31.6	0.0	2.9e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124028046|ref|YP_001013366.1|	-	2.7e-07	30.6	0.1	3.9e-07	30.1	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|124028046|ref|YP_001013366.1|	-	4.6e-07	29.0	0.0	7.1e-07	28.4	0.0	1.3	1	0	0	1	1	1	1	Putative	methyltransferase
RrnaAD	PF00398.15	gi|124028046|ref|YP_001013366.1|	-	1.4e-06	27.5	0.0	2e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|124028046|ref|YP_001013366.1|	-	2e-06	27.0	0.0	2.9e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_11	PF08241.7	gi|124028046|ref|YP_001013366.1|	-	4.1e-06	27.1	0.0	1e-05	25.8	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|124028046|ref|YP_001013366.1|	-	1.9e-05	23.9	0.0	2.6e-05	23.5	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
UPF0020	PF01170.13	gi|124028046|ref|YP_001013366.1|	-	0.00021	20.9	0.0	0.00033	20.2	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_32	PF13679.1	gi|124028046|ref|YP_001013366.1|	-	0.00022	20.9	0.0	0.00033	20.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124028046|ref|YP_001013366.1|	-	0.00046	20.6	0.0	0.00086	19.7	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|124028046|ref|YP_001013366.1|	-	0.0026	17.3	0.0	0.0039	16.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_8	PF05148.10	gi|124028046|ref|YP_001013366.1|	-	0.006	16.2	0.0	0.0098	15.5	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_23	PF13489.1	gi|124028046|ref|YP_001013366.1|	-	0.0079	15.9	0.0	0.015	15.0	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|124028046|ref|YP_001013366.1|	-	0.02	13.9	0.0	0.03	13.4	0.0	1.2	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
MetW	PF07021.7	gi|124028046|ref|YP_001013366.1|	-	0.042	13.2	0.0	0.059	12.7	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
FmrO	PF07091.6	gi|124028046|ref|YP_001013366.1|	-	0.047	12.6	0.0	0.069	12.1	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_15	PF09445.5	gi|124028046|ref|YP_001013366.1|	-	0.07	12.6	0.0	0.094	12.2	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
YbjQ_1	PF01906.12	gi|124028046|ref|YP_001013366.1|	-	0.083	13.3	0.0	0.36	11.2	0.0	1.9	2	0	0	2	2	2	0	Putative	heavy-metal-binding
N6_Mtase	PF02384.11	gi|124028046|ref|YP_001013366.1|	-	0.14	11.2	0.0	0.19	10.7	0.0	1.1	1	0	0	1	1	1	0	N-6	DNA	Methylase
GCD14	PF08704.5	gi|124028046|ref|YP_001013366.1|	-	0.15	11.5	0.0	0.24	10.8	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
tRNA-synt_1e	PF01406.14	gi|124028047|ref|YP_001013367.1|	-	3.3e-129	430.3	0.0	5.3e-129	429.6	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|124028047|ref|YP_001013367.1|	-	3.1e-21	75.5	0.2	4.1e-12	45.4	0.1	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
DALR_2	PF09190.6	gi|124028047|ref|YP_001013367.1|	-	8.3e-09	35.5	0.7	8.3e-09	35.5	0.5	2.1	3	0	0	3	3	3	1	DALR	domain
tRNA-synt_1	PF00133.17	gi|124028047|ref|YP_001013367.1|	-	1.9e-08	32.7	0.0	5.8e-06	24.5	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1f	PF01921.13	gi|124028047|ref|YP_001013367.1|	-	1.6e-05	23.7	0.0	0.00047	18.9	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
Effector_1	PF04518.7	gi|124028047|ref|YP_001013367.1|	-	0.031	13.2	0.3	0.047	12.6	0.2	1.2	1	0	0	1	1	1	0	Effector	from	type	III	secretion	system
tRNA-synt_1c	PF00749.16	gi|124028047|ref|YP_001013367.1|	-	0.1	11.2	0.1	0.39	9.3	0.0	2.0	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
CHAD	PF05235.9	gi|124028047|ref|YP_001013367.1|	-	0.19	11.2	2.5	0.16	11.5	0.4	1.9	2	1	0	2	2	2	0	CHAD	domain
Radical_SAM	PF04055.16	gi|124028048|ref|YP_001013368.1|	-	3.4e-07	30.6	0.4	5.2e-06	26.7	0.3	2.6	2	1	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124028048|ref|YP_001013368.1|	-	0.064	13.3	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
THUMP	PF02926.12	gi|124028049|ref|YP_001013369.1|	-	5.3e-09	36.1	0.0	7.7e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	THUMP	domain
DUF87	PF01935.12	gi|124028050|ref|YP_001013370.1|	-	1.5e-44	152.5	0.4	2.4e-44	151.8	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|124028050|ref|YP_001013370.1|	-	5.8e-21	75.2	1.3	1.5e-19	70.5	0.9	2.1	1	1	0	1	1	1	1	AAA-like	domain
DUF853	PF05872.7	gi|124028050|ref|YP_001013370.1|	-	1.5e-09	36.7	0.2	0.00011	20.7	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|124028050|ref|YP_001013370.1|	-	3.4e-05	22.6	0.0	0.00016	20.4	0.0	1.9	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HAS-barrel	PF09378.5	gi|124028050|ref|YP_001013370.1|	-	0.00048	19.9	2.3	0.00055	19.7	0.0	2.3	3	0	0	3	3	3	1	HAS	barrel	domain
FtsK_SpoIIIE	PF01580.13	gi|124028050|ref|YP_001013370.1|	-	0.0012	18.3	0.6	0.86	9.0	0.0	2.7	3	0	0	3	3	3	2	FtsK/SpoIIIE	family
ScpA_ScpB	PF02616.9	gi|124028050|ref|YP_001013370.1|	-	0.036	13.6	0.5	0.063	12.8	0.1	1.5	2	0	0	2	2	2	0	ScpA/B	protein
T4SS-DNA_transf	PF02534.9	gi|124028050|ref|YP_001013370.1|	-	0.052	12.1	0.1	0.085	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretory	system	Conjugative	DNA	transfer
Metallophos_2	PF12850.2	gi|124028051|ref|YP_001013371.1|	-	2.1e-16	60.1	0.1	3.1e-16	59.6	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|124028051|ref|YP_001013371.1|	-	4.1e-16	58.9	0.3	6.9e-16	58.2	0.2	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
PhoD	PF09423.5	gi|124028051|ref|YP_001013371.1|	-	0.1	11.1	0.0	0.23	9.9	0.0	1.7	1	0	0	1	1	1	0	PhoD-like	phosphatase
SMC_N	PF02463.14	gi|124028052|ref|YP_001013372.1|	-	4.3e-22	78.4	0.4	1.4e-10	40.8	0.2	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|124028052|ref|YP_001013372.1|	-	4.1e-19	69.7	72.8	6.2e-17	62.5	14.4	6.2	2	2	0	2	2	1	1	AAA	domain
AAA_13	PF13166.1	gi|124028052|ref|YP_001013372.1|	-	5.6e-17	61.4	48.5	3e-08	32.6	21.8	5.6	2	1	2	4	4	4	3	AAA	domain
Rad50_zn_hook	PF04423.9	gi|124028052|ref|YP_001013372.1|	-	4.4e-14	51.6	0.5	4.4e-14	51.6	0.3	6.8	6	0	0	6	6	5	1	Rad50	zinc	hook	motif
AAA_21	PF13304.1	gi|124028052|ref|YP_001013372.1|	-	1.4e-13	51.5	6.7	4.9e-08	33.2	0.1	3.6	3	1	0	4	4	4	2	AAA	domain
SbcCD_C	PF13558.1	gi|124028052|ref|YP_001013372.1|	-	3.1e-08	33.4	0.0	7.5e-08	32.1	0.0	1.7	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_15	PF13175.1	gi|124028052|ref|YP_001013372.1|	-	1.2e-07	31.1	8.7	8.8e-05	21.7	0.0	3.4	4	1	0	4	4	3	2	AAA	ATPase	domain
Baculo_PEP_C	PF04513.7	gi|124028052|ref|YP_001013372.1|	-	2.9e-07	30.4	7.4	0.67	9.7	0.2	6.2	3	3	2	5	5	5	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_27	PF13514.1	gi|124028052|ref|YP_001013372.1|	-	3.8e-07	28.2	91.1	0.0042	14.8	17.3	5.9	4	2	2	6	6	6	4	AAA	domain
NPV_P10	PF05531.7	gi|124028052|ref|YP_001013372.1|	-	1.9e-06	28.0	11.9	1.3	9.3	0.5	7.4	4	2	2	7	7	6	1	Nucleopolyhedrovirus	P10	protein
ABC_tran	PF00005.22	gi|124028052|ref|YP_001013372.1|	-	5.3e-06	26.7	12.8	0.0094	16.2	0.0	5.0	3	2	0	3	3	3	2	ABC	transporter
Tropomyosin_1	PF12718.2	gi|124028052|ref|YP_001013372.1|	-	9.8e-06	25.4	104.5	0.00093	19.0	16.5	5.7	3	2	2	5	5	5	3	Tropomyosin	like
AAA_29	PF13555.1	gi|124028052|ref|YP_001013372.1|	-	1.4e-05	24.5	0.0	2.9e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Reo_sigmaC	PF04582.7	gi|124028052|ref|YP_001013372.1|	-	4.9e-05	22.6	2.1	7.9	5.5	0.1	4.5	1	1	1	4	4	4	0	Reovirus	sigma	C	capsid	protein
Spc7	PF08317.6	gi|124028052|ref|YP_001013372.1|	-	7.7e-05	21.4	76.0	0.089	11.4	8.9	6.3	3	2	4	7	7	7	5	Spc7	kinetochore	protein
IncA	PF04156.9	gi|124028052|ref|YP_001013372.1|	-	0.00014	21.5	109.0	0.019	14.5	11.8	6.0	1	1	3	5	5	4	2	IncA	protein
BLOC1_2	PF10046.4	gi|124028052|ref|YP_001013372.1|	-	0.00026	21.0	48.6	0.064	13.3	0.2	8.2	3	2	5	9	9	8	3	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Prefoldin_2	PF01920.15	gi|124028052|ref|YP_001013372.1|	-	0.0054	16.4	2.4	0.0054	16.4	1.7	10.9	2	2	8	11	11	11	1	Prefoldin	subunit
AAA_19	PF13245.1	gi|124028052|ref|YP_001013372.1|	-	0.014	15.1	0.1	0.068	12.9	0.1	2.2	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF1664	PF07889.7	gi|124028052|ref|YP_001013372.1|	-	0.016	14.9	32.3	0.68	9.7	0.1	6.1	4	2	4	8	8	7	0	Protein	of	unknown	function	(DUF1664)
FliD_N	PF02465.13	gi|124028052|ref|YP_001013372.1|	-	0.025	14.9	3.9	0.5	10.7	0.4	4.2	3	2	0	3	3	2	0	Flagellar	hook-associated	protein	2	N-terminus
Phage_GP20	PF06810.6	gi|124028052|ref|YP_001013372.1|	-	0.028	13.8	52.6	0.033	13.6	2.9	7.4	2	2	6	8	8	8	0	Phage	minor	structural	protein	GP20
DUF4055	PF13264.1	gi|124028052|ref|YP_001013372.1|	-	0.043	13.8	2.1	2.6	8.1	0.9	2.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4055)
DUF948	PF06103.6	gi|124028052|ref|YP_001013372.1|	-	0.054	13.3	10.4	18	5.2	0.0	6.3	5	2	2	7	7	6	0	Bacterial	protein	of	unknown	function	(DUF948)
Miro	PF08477.8	gi|124028052|ref|YP_001013372.1|	-	0.06	13.8	0.2	0.45	11.0	0.0	2.6	2	0	0	2	2	2	0	Miro-like	protein
PilJ	PF13675.1	gi|124028052|ref|YP_001013372.1|	-	0.12	12.6	43.5	1.4	9.2	1.2	8.0	2	2	5	7	7	7	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF2937	PF11157.3	gi|124028052|ref|YP_001013372.1|	-	0.19	11.0	20.5	2.1	7.6	1.1	4.7	4	1	0	4	4	4	0	Protein	of	unknown	function	(DUF2937)
FlxA	PF14282.1	gi|124028052|ref|YP_001013372.1|	-	0.24	11.3	18.4	0.12	12.3	5.8	4.0	3	1	0	3	3	3	0	FlxA-like	protein
Occludin_ELL	PF07303.8	gi|124028052|ref|YP_001013372.1|	-	0.31	11.8	65.4	0.32	11.7	1.9	8.1	3	3	3	7	7	7	0	Occludin	homology	domain
AAA_22	PF13401.1	gi|124028052|ref|YP_001013372.1|	-	0.32	11.1	0.0	0.32	11.1	0.0	4.1	3	1	0	3	3	3	0	AAA	domain
DUF3584	PF12128.3	gi|124028052|ref|YP_001013372.1|	-	0.45	7.7	74.2	0.2	8.9	21.9	3.8	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3584)
WXG100	PF06013.7	gi|124028052|ref|YP_001013372.1|	-	0.49	10.4	12.0	9.5	6.3	0.0	6.5	5	3	1	6	6	5	0	Proteins	of	100	residues	with	WXG
DUF2935	PF11155.3	gi|124028052|ref|YP_001013372.1|	-	0.79	9.8	17.9	0.11	12.5	0.3	4.9	3	2	1	4	4	4	0	Domain	of	unknown	function	(DUF2935)
Syntaxin	PF00804.20	gi|124028052|ref|YP_001013372.1|	-	1.1	9.4	48.8	0.23	11.6	0.7	7.9	2	2	2	5	5	5	0	Syntaxin
Laminin_II	PF06009.7	gi|124028052|ref|YP_001013372.1|	-	1.9	8.2	47.3	0.43	10.3	2.9	7.2	2	2	5	7	7	7	0	Laminin	Domain	II
Shugoshin_N	PF07558.6	gi|124028052|ref|YP_001013372.1|	-	2.6	7.8	13.0	0.14	11.9	1.7	3.7	3	0	0	3	3	2	0	Shugoshin	N-terminal	coiled-coil	region
DASH_Dam1	PF08653.5	gi|124028052|ref|YP_001013372.1|	-	3.1	7.6	8.2	57	3.5	0.0	5.9	6	3	3	9	9	5	0	DASH	complex	subunit	Dam1
EzrA	PF06160.7	gi|124028052|ref|YP_001013372.1|	-	4.1	5.4	74.3	0.074	11.2	8.9	5.6	2	2	3	5	5	5	0	Septation	ring	formation	regulator,	EzrA
TMF_TATA_bd	PF12325.3	gi|124028052|ref|YP_001013372.1|	-	4.4	7.0	105.9	0.2	11.4	5.0	7.5	2	2	4	7	7	7	0	TATA	element	modulatory	factor	1	TATA	binding
GAS	PF13851.1	gi|124028052|ref|YP_001013372.1|	-	4.7	6.3	95.1	0.27	10.4	6.7	7.1	3	2	3	7	7	7	0	Growth-arrest	specific	micro-tubule	binding
TPR_MLP1_2	PF07926.7	gi|124028052|ref|YP_001013372.1|	-	4.7	6.9	79.0	0.2	11.3	13.6	5.5	3	1	2	5	5	5	0	TPR/MLP1/MLP2-like	protein
DUF3251	PF11622.3	gi|124028052|ref|YP_001013372.1|	-	7	6.0	6.7	14	5.0	0.3	3.5	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF3251)
DUF4298	PF14131.1	gi|124028052|ref|YP_001013372.1|	-	7.7	6.4	34.9	7	6.5	0.4	7.7	5	3	1	7	7	7	0	Domain	of	unknown	function	(DUF4298)
Gln-synt_C	PF00120.19	gi|124028054|ref|YP_001013374.1|	-	2.1e-85	285.9	0.0	2.6e-85	285.6	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|124028054|ref|YP_001013374.1|	-	1.9e-16	59.3	0.0	3.3e-16	58.6	0.0	1.4	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
DUF1370	PF07114.6	gi|124028055|ref|YP_001013375.1|	-	0.11	11.6	0.0	0.16	11.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1370)
Prok-JAB	PF14464.1	gi|124028055|ref|YP_001013375.1|	-	0.12	11.9	0.1	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	Prokaryotic	homologs	of	the	JAB	domain
PhosphMutase	PF10143.4	gi|124028056|ref|YP_001013376.1|	-	4.2e-54	182.7	0.0	5.5e-54	182.3	0.0	1.2	1	0	0	1	1	1	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.13	gi|124028056|ref|YP_001013376.1|	-	2.9e-28	98.9	0.0	3.9e-28	98.5	0.0	1.1	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.17	gi|124028056|ref|YP_001013376.1|	-	6.2e-05	22.4	0.0	0.0027	17.1	0.0	2.2	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
HD	PF01966.17	gi|124028057|ref|YP_001013377.1|	-	2.4e-11	43.7	0.3	3.8e-11	43.0	0.2	1.3	1	0	0	1	1	1	1	HD	domain
NifW	PF03206.9	gi|124028057|ref|YP_001013377.1|	-	0.046	13.8	0.1	0.11	12.6	0.0	1.7	1	1	0	1	1	1	0	Nitrogen	fixation	protein	NifW
VIT1	PF01988.14	gi|124028058|ref|YP_001013378.1|	-	1.3e-17	63.9	21.5	8e-17	61.4	14.9	1.9	1	1	0	1	1	1	1	VIT	family
PepSY_TM_3	PF13706.1	gi|124028058|ref|YP_001013378.1|	-	0.08	12.3	0.0	0.08	12.3	0.0	3.0	3	0	0	3	3	3	0	PepSY-associated	TM	helix
TMEM238	PF15125.1	gi|124028058|ref|YP_001013378.1|	-	1.5	8.7	5.0	4.3	7.3	3.5	1.8	1	0	0	1	1	1	0	TMEM238	protein	family
zf-FPG_IleRS	PF06827.9	gi|124028059|ref|YP_001013379.1|	-	0.0021	17.6	6.9	0.25	10.9	0.3	2.8	3	0	0	3	3	3	2	Zinc	finger	found	in	FPG	and	IleRS
zf-ISL3	PF14690.1	gi|124028059|ref|YP_001013379.1|	-	0.0038	17.2	0.6	1.1	9.3	0.0	2.4	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ZPR1	PF03367.8	gi|124028059|ref|YP_001013379.1|	-	0.0069	15.5	0.1	0.0082	15.3	0.1	1.2	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
Mu-like_Com	PF10122.4	gi|124028059|ref|YP_001013379.1|	-	0.018	14.1	1.2	0.58	9.2	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zf-ribbon_3	PF13248.1	gi|124028059|ref|YP_001013379.1|	-	0.023	13.9	1.1	1.2	8.4	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|124028059|ref|YP_001013379.1|	-	0.032	14.0	0.2	0.084	12.7	0.2	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_4	PF13717.1	gi|124028059|ref|YP_001013379.1|	-	0.034	13.8	3.3	0.83	9.3	1.5	2.7	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|124028059|ref|YP_001013379.1|	-	0.036	14.0	1.4	6.2	6.8	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|124028059|ref|YP_001013379.1|	-	0.038	13.7	4.9	0.12	12.2	3.4	1.7	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|124028059|ref|YP_001013379.1|	-	0.041	14.1	0.8	0.15	12.3	0.5	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Prok-RING_1	PF14446.1	gi|124028059|ref|YP_001013379.1|	-	0.046	13.4	0.1	1.2	8.9	0.0	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_5	PF13719.1	gi|124028059|ref|YP_001013379.1|	-	0.057	13.0	4.1	1.2	8.7	1.8	2.7	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124028059|ref|YP_001013379.1|	-	0.065	12.7	2.7	2.4	7.7	0.1	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|124028059|ref|YP_001013379.1|	-	0.069	12.6	1.0	5.1	6.6	0.0	2.3	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|124028059|ref|YP_001013379.1|	-	0.076	12.3	0.3	4.9	6.5	0.0	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-TFIIB	PF13453.1	gi|124028059|ref|YP_001013379.1|	-	0.1	11.7	3.2	0.46	9.7	2.4	1.8	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
zinc_ribbon_2	PF13240.1	gi|124028059|ref|YP_001013379.1|	-	0.16	11.4	2.9	8.5	6.0	2.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|124028059|ref|YP_001013379.1|	-	0.24	11.2	2.0	9.3	6.2	0.3	2.1	2	0	0	2	2	2	0	Rubredoxin
Cys_rich_KTR	PF14205.1	gi|124028059|ref|YP_001013379.1|	-	0.55	9.7	2.4	1.1	8.7	1.7	1.7	1	1	0	1	1	1	0	Cysteine-rich	KTR
DUF3797	PF12677.2	gi|124028059|ref|YP_001013379.1|	-	0.78	9.4	3.8	0.38	10.3	0.4	2.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-IS66	PF13005.2	gi|124028059|ref|YP_001013379.1|	-	1.1	9.2	6.9	2	8.4	1.4	2.4	3	0	0	3	3	2	0	zinc-finger	binding	domain	of	transposase	IS66
UPF0547	PF10571.4	gi|124028059|ref|YP_001013379.1|	-	1.2	8.9	6.9	5.9	6.6	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-HIT	PF04438.11	gi|124028059|ref|YP_001013379.1|	-	1.2	8.8	7.2	7.3	6.3	1.3	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
Zn_ribbon_recom	PF13408.1	gi|124028059|ref|YP_001013379.1|	-	2.6	8.3	6.5	4.8	7.5	4.5	1.6	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-CCHC_5	PF14787.1	gi|124028059|ref|YP_001013379.1|	-	3.1	7.3	6.4	11	5.6	0.3	2.2	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
DUF2296	PF10058.4	gi|124028059|ref|YP_001013379.1|	-	4.8	7.0	6.1	48	3.8	4.1	2.2	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Radical_SAM	PF04055.16	gi|124028060|ref|YP_001013380.1|	-	6.7e-29	101.1	0.1	3.9e-28	98.7	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.8	gi|124028060|ref|YP_001013380.1|	-	2.3e-18	66.0	0.0	3.7e-18	65.4	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_14	PF13394.1	gi|124028060|ref|YP_001013380.1|	-	9.7e-08	32.0	0.0	2.3e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124028060|ref|YP_001013380.1|	-	3.3e-06	27.2	0.0	1.4e-05	25.2	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
UbiA	PF01040.13	gi|124028061|ref|YP_001013381.1|	-	2e-30	105.8	25.7	2.4e-30	105.6	17.8	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
OTCace	PF00185.19	gi|124028062|ref|YP_001013382.1|	-	3.7e-57	192.6	0.0	6.6e-57	191.8	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.16	gi|124028062|ref|YP_001013382.1|	-	3.4e-49	166.1	0.0	6.4e-49	165.2	0.0	1.5	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
DUF814	PF05670.8	gi|124028062|ref|YP_001013382.1|	-	0.02	14.7	0.0	0.33	10.8	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF814)
DUF911	PF06023.7	gi|124028062|ref|YP_001013382.1|	-	0.11	11.6	0.0	0.18	10.9	0.0	1.3	1	0	0	1	1	1	0	Archaeal	protein	of	unknown	function	(DUF911)
YjeF_N	PF03853.10	gi|124028063|ref|YP_001013383.1|	-	0.056	13.0	0.1	0.92	9.0	0.0	2.4	1	1	0	2	2	2	0	YjeF-related	protein	N-terminus
STT3	PF02516.9	gi|124028064|ref|YP_001013384.1|	-	4.8e-23	81.8	34.1	8.6e-23	81.0	23.6	1.3	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
PMT_2	PF13231.1	gi|124028064|ref|YP_001013384.1|	-	1.5e-05	24.9	16.4	1.5e-05	24.9	11.4	4.0	2	2	2	4	4	4	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Baculo_PEP_C	PF04513.7	gi|124028065|ref|YP_001013385.1|	-	0.0031	17.3	1.3	0.0039	17.0	0.9	1.2	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF3450	PF11932.3	gi|124028065|ref|YP_001013385.1|	-	0.023	13.9	0.1	0.037	13.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
SAC3_GANP	PF03399.11	gi|124028065|ref|YP_001013385.1|	-	0.074	12.5	0.0	0.086	12.3	0.0	1.3	1	0	0	1	1	1	0	SAC3/GANP/Nin1/mts3/eIF-3	p25	family
HTH_32	PF13565.1	gi|124028068|ref|YP_001013388.1|	-	0.023	15.4	1.7	0.36	11.6	0.2	2.5	1	1	2	3	3	3	0	Homeodomain-like	domain
CPSase_L_D3	PF02787.14	gi|124028068|ref|YP_001013388.1|	-	0.025	14.3	0.0	0.037	13.7	0.0	1.4	1	1	0	1	1	1	0	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
DUF550	PF04447.7	gi|124028068|ref|YP_001013388.1|	-	0.041	13.4	0.2	0.093	12.3	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF550)
BcrAD_BadFG	PF01869.15	gi|124028068|ref|YP_001013388.1|	-	0.046	13.0	0.0	0.05	12.9	0.0	1.0	1	0	0	1	1	1	0	BadF/BadG/BcrA/BcrD	ATPase	family
DUF2285	PF10074.4	gi|124028068|ref|YP_001013388.1|	-	0.053	13.8	0.4	2.4	8.5	0.2	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2285)
HTH_28	PF13518.1	gi|124028068|ref|YP_001013388.1|	-	0.064	13.2	0.5	0.47	10.5	0.0	2.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
Arg_repressor	PF01316.16	gi|124028068|ref|YP_001013388.1|	-	0.072	12.6	0.2	0.34	10.5	0.0	2.0	1	1	1	2	2	2	0	Arginine	repressor,	DNA	binding	domain
HTH_Tnp_1	PF01527.15	gi|124028068|ref|YP_001013388.1|	-	0.11	12.5	0.3	0.31	11.0	0.1	2.0	1	1	1	2	2	2	0	Transposase
Rrf2	PF02082.15	gi|124028069|ref|YP_001013389.1|	-	0.006	16.6	0.0	0.012	15.7	0.0	1.6	1	1	0	1	1	1	1	Transcriptional	regulator
TFIIE_alpha	PF02002.12	gi|124028069|ref|YP_001013389.1|	-	0.068	12.6	0.0	0.1	12.0	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
CTP_transf_2	PF01467.21	gi|124028070|ref|YP_001013390.1|	-	3.4e-10	40.1	0.0	5.6e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Cytidylyltransferase
NAD_kinase	PF01513.16	gi|124028071|ref|YP_001013391.1|	-	4.9e-49	166.6	0.0	5.6e-49	166.4	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|124028071|ref|YP_001013391.1|	-	2.9e-05	23.4	0.2	0.00013	21.4	0.0	2.1	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
DeoRC	PF00455.17	gi|124028071|ref|YP_001013391.1|	-	3.2e-05	23.6	0.1	0.00018	21.1	0.0	2.2	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
DUF2866	PF11065.3	gi|124028071|ref|YP_001013391.1|	-	0.11	12.4	0.1	0.55	10.1	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2866)
UL11	PF11094.3	gi|124028071|ref|YP_001013391.1|	-	0.14	12.0	0.6	0.32	10.8	0.1	1.8	2	0	0	2	2	2	0	Membrane-associated	tegument	protein
Peptidase_M50	PF02163.17	gi|124028072|ref|YP_001013392.1|	-	4.4e-14	51.8	9.6	9.1e-13	47.5	6.7	2.3	1	1	0	1	1	1	1	Peptidase	family	M50
Peptidase_M1	PF01433.15	gi|124028072|ref|YP_001013392.1|	-	0.12	11.4	0.1	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	Peptidase	family	M1
tRNA_SAD	PF07973.9	gi|124028073|ref|YP_001013393.1|	-	1.7e-09	37.3	0.3	3e-09	36.6	0.2	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.14	gi|124028073|ref|YP_001013393.1|	-	1.9e-07	29.7	0.0	2.8e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
CbiA	PF01656.18	gi|124028074|ref|YP_001013394.1|	-	7e-06	25.5	0.0	2.1e-05	24.0	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|124028074|ref|YP_001013394.1|	-	0.041	13.4	0.1	0.17	11.4	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
HTH_45	PF14947.1	gi|124028075|ref|YP_001013395.1|	-	0.00018	21.2	0.1	0.015	15.0	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_23	PF13384.1	gi|124028075|ref|YP_001013395.1|	-	0.002	17.7	0.2	0.0058	16.2	0.1	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
Mrr_N	PF14338.1	gi|124028075|ref|YP_001013395.1|	-	0.0057	16.7	1.8	1.5	8.9	0.1	3.0	2	1	1	3	3	3	2	Mrr	N-terminal	domain
KorB	PF08535.5	gi|124028075|ref|YP_001013395.1|	-	0.021	14.9	0.0	0.07	13.2	0.0	1.9	2	0	0	2	2	2	0	KorB	domain
HTH_29	PF13551.1	gi|124028075|ref|YP_001013395.1|	-	0.047	13.8	0.5	4.3	7.5	0.1	2.8	2	2	0	2	2	2	0	Winged	helix-turn	helix
CCAP	PF11105.3	gi|124028075|ref|YP_001013395.1|	-	0.071	12.8	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Arthropod	cardioacceleratory	peptide	2a
TrmB	PF01978.14	gi|124028075|ref|YP_001013395.1|	-	0.1	12.3	0.5	0.95	9.2	0.0	2.6	3	1	1	4	4	4	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2258	PF10015.4	gi|124028076|ref|YP_001013396.1|	-	1.9e-32	110.8	0.3	3.9e-32	109.8	0.2	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
eIF-1a	PF01176.14	gi|124028076|ref|YP_001013396.1|	-	0.23	10.9	3.2	0.32	10.4	1.2	2.0	2	1	1	3	3	3	0	Translation	initiation	factor	1A	/	IF-1
DUF650	PF04894.7	gi|124028077|ref|YP_001013397.1|	-	5.1e-96	321.3	0.0	6.3e-96	321.0	0.0	1.1	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|124028077|ref|YP_001013397.1|	-	1.3e-33	114.8	0.1	2.1e-33	114.2	0.1	1.3	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
eRF1_2	PF03464.10	gi|124028078|ref|YP_001013398.1|	-	9.6e-37	126.2	0.1	1.7e-36	125.4	0.1	1.4	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.10	gi|124028078|ref|YP_001013398.1|	-	4.7e-17	62.2	1.5	7.4e-16	58.4	0.3	2.7	2	1	0	2	2	2	1	eRF1	domain	3
eRF1_1	PF03463.10	gi|124028078|ref|YP_001013398.1|	-	6.1e-17	61.4	0.0	1.5e-16	60.1	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	1
SpoU_sub_bind	PF08032.7	gi|124028078|ref|YP_001013398.1|	-	0.0022	18.1	0.0	0.039	14.1	0.0	2.7	2	0	0	2	2	2	1	RNA	2'-O	ribose	methyltransferase	substrate	binding
ChlI	PF13541.1	gi|124028079|ref|YP_001013399.1|	-	0.033	13.6	0.0	0.051	13.0	0.0	1.2	1	0	0	1	1	1	0	Subunit	ChlI	of	Mg-chelatase
HTH_23	PF13384.1	gi|124028080|ref|YP_001013400.1|	-	4.8e-06	26.0	0.1	1.6e-05	24.3	0.1	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|124028080|ref|YP_001013400.1|	-	2.1e-05	23.9	0.2	2.1e-05	23.9	0.1	2.9	3	0	0	3	3	2	1	Helix-turn-helix	domain
Mod_r	PF07200.8	gi|124028080|ref|YP_001013400.1|	-	7.3e-05	22.7	9.1	0.02	14.8	7.2	2.1	2	0	0	2	2	2	1	Modifier	of	rudimentary	(Mod(r))	protein
EzrA	PF06160.7	gi|124028080|ref|YP_001013400.1|	-	0.00015	20.1	4.2	0.00019	19.7	2.9	1.3	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
Sigma70_r4_2	PF08281.7	gi|124028080|ref|YP_001013400.1|	-	0.00025	20.4	0.1	0.00025	20.4	0.1	2.9	3	0	0	3	3	2	1	Sigma-70,	region	4
GerE	PF00196.14	gi|124028080|ref|YP_001013400.1|	-	0.00031	19.9	0.0	0.00076	18.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
ALIX_LYPXL_bnd	PF13949.1	gi|124028080|ref|YP_001013400.1|	-	0.00095	18.2	11.2	0.0015	17.5	7.8	1.3	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
V_ATPase_I	PF01496.14	gi|124028080|ref|YP_001013400.1|	-	0.0017	16.3	10.5	0.0029	15.5	7.3	1.3	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
IncA	PF04156.9	gi|124028080|ref|YP_001013400.1|	-	0.0018	17.9	23.0	0.0023	17.5	16.0	1.4	1	1	0	1	1	1	1	IncA	protein
4HB_MCP_1	PF12729.2	gi|124028080|ref|YP_001013400.1|	-	0.0018	17.6	8.4	0.0033	16.7	5.8	1.4	1	0	0	1	1	1	1	Four	helix	bundle	sensory	module	for	signal	transduction
Spc7	PF08317.6	gi|124028080|ref|YP_001013400.1|	-	0.002	16.8	8.7	0.0028	16.3	6.0	1.4	1	0	0	1	1	1	1	Spc7	kinetochore	protein
CENP-F_leu_zip	PF10473.4	gi|124028080|ref|YP_001013400.1|	-	0.0023	17.8	21.4	0.0023	17.8	14.8	1.7	2	0	0	2	2	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Dor1	PF04124.7	gi|124028080|ref|YP_001013400.1|	-	0.0024	16.4	5.6	0.0036	15.8	3.9	1.2	1	0	0	1	1	1	1	Dor1-like	family
HTH_11	PF08279.7	gi|124028080|ref|YP_001013400.1|	-	0.0028	17.2	0.1	0.0028	17.2	0.1	2.9	4	1	0	4	4	1	1	HTH	domain
GAS	PF13851.1	gi|124028080|ref|YP_001013400.1|	-	0.0033	16.6	14.5	0.0067	15.6	10.1	1.5	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
HTH_40	PF14493.1	gi|124028080|ref|YP_001013400.1|	-	0.0036	17.4	7.3	0.089	13.0	5.1	2.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
Mnd1	PF03962.10	gi|124028080|ref|YP_001013400.1|	-	0.0039	16.8	12.3	0.0083	15.8	8.5	1.5	1	0	0	1	1	1	1	Mnd1	family
KorB	PF08535.5	gi|124028080|ref|YP_001013400.1|	-	0.0043	17.1	0.4	0.011	15.8	0.1	1.9	1	1	1	2	2	1	1	KorB	domain
DUF1664	PF07889.7	gi|124028080|ref|YP_001013400.1|	-	0.0045	16.7	3.1	0.0089	15.8	2.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.4	gi|124028080|ref|YP_001013400.1|	-	0.0051	16.9	10.3	0.017	15.2	7.1	1.9	1	1	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Laminin_II	PF06009.7	gi|124028080|ref|YP_001013400.1|	-	0.0055	16.4	5.1	0.0055	16.4	3.5	1.5	2	0	0	2	2	1	1	Laminin	Domain	II
Zw10	PF06248.8	gi|124028080|ref|YP_001013400.1|	-	0.0056	14.8	2.4	0.0064	14.6	1.7	1.1	1	0	0	1	1	1	1	Centromere/kinetochore	Zw10
HTH_28	PF13518.1	gi|124028080|ref|YP_001013400.1|	-	0.0057	16.6	0.2	0.016	15.1	0.1	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF342	PF03961.8	gi|124028080|ref|YP_001013400.1|	-	0.0065	14.9	13.9	0.009	14.4	9.6	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF342)
HTH_19	PF12844.2	gi|124028080|ref|YP_001013400.1|	-	0.0071	16.3	0.1	0.0071	16.3	0.0	2.6	2	1	0	2	2	1	1	Helix-turn-helix	domain
DivIC	PF04977.10	gi|124028080|ref|YP_001013400.1|	-	0.01	15.3	10.6	0.01	15.3	7.4	2.9	2	1	1	3	3	2	0	Septum	formation	initiator
HTH_24	PF13412.1	gi|124028080|ref|YP_001013400.1|	-	0.01	15.1	0.1	0.01	15.1	0.1	3.0	3	0	0	3	3	2	0	Winged	helix-turn-helix	DNA-binding
EAP30	PF04157.11	gi|124028080|ref|YP_001013400.1|	-	0.011	14.9	8.4	0.15	11.2	0.0	2.4	2	1	1	3	3	3	0	EAP30/Vps36	family
HTH_DeoR	PF08220.7	gi|124028080|ref|YP_001013400.1|	-	0.011	15.2	0.9	0.028	13.9	0.0	2.2	2	0	0	2	2	1	0	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.15	gi|124028080|ref|YP_001013400.1|	-	0.013	15.1	0.0	0.048	13.3	0.0	2.0	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF3373	PF11853.3	gi|124028080|ref|YP_001013400.1|	-	0.013	14.0	9.6	0.53	8.7	4.5	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3373)
HTH_31	PF13560.1	gi|124028080|ref|YP_001013400.1|	-	0.013	15.6	0.2	0.013	15.6	0.1	3.1	2	1	0	2	2	1	0	Helix-turn-helix	domain
Terminase_5	PF06056.7	gi|124028080|ref|YP_001013400.1|	-	0.015	14.8	0.0	0.037	13.5	0.0	1.6	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
DUF972	PF06156.8	gi|124028080|ref|YP_001013400.1|	-	0.015	15.6	14.7	0.29	11.4	2.0	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
HTH_20	PF12840.2	gi|124028080|ref|YP_001013400.1|	-	0.018	14.8	6.7	0.11	12.3	0.0	2.8	3	0	0	3	3	2	0	Helix-turn-helix	domain
FlxA	PF14282.1	gi|124028080|ref|YP_001013400.1|	-	0.018	14.9	4.7	0.033	14.1	3.2	1.4	1	0	0	1	1	1	0	FlxA-like	protein
FUSC	PF04632.7	gi|124028080|ref|YP_001013400.1|	-	0.019	13.4	3.1	0.025	13.0	2.2	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
HTH_29	PF13551.1	gi|124028080|ref|YP_001013400.1|	-	0.019	15.0	0.0	0.019	15.0	0.0	2.6	2	1	0	2	2	1	0	Winged	helix-turn	helix
DUF3489	PF11994.3	gi|124028080|ref|YP_001013400.1|	-	0.02	14.8	0.1	0.048	13.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
DUF4618	PF15397.1	gi|124028080|ref|YP_001013400.1|	-	0.02	14.2	9.5	0.15	11.3	0.3	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
TPR_MLP1_2	PF07926.7	gi|124028080|ref|YP_001013400.1|	-	0.023	14.4	18.9	0.036	13.8	13.1	1.5	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
DUF2316	PF10078.4	gi|124028080|ref|YP_001013400.1|	-	0.023	14.6	1.4	0.17	11.9	0.0	2.3	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
Allexi_40kDa	PF05549.6	gi|124028080|ref|YP_001013400.1|	-	0.028	13.7	0.7	0.041	13.1	0.5	1.2	1	0	0	1	1	1	0	Allexivirus	40kDa	protein
APG6	PF04111.7	gi|124028080|ref|YP_001013400.1|	-	0.03	13.3	19.3	0.056	12.4	13.4	1.5	1	1	0	1	1	1	0	Autophagy	protein	Apg6
PaaX	PF07848.7	gi|124028080|ref|YP_001013400.1|	-	0.032	14.2	0.1	0.075	13.0	0.0	1.6	1	0	0	1	1	1	0	PaaX-like	protein
DUF2408	PF10303.4	gi|124028080|ref|YP_001013400.1|	-	0.035	14.2	6.5	0.046	13.8	3.9	1.7	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF2408)
TrmB	PF01978.14	gi|124028080|ref|YP_001013400.1|	-	0.039	13.6	1.8	0.11	12.2	0.0	2.3	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
FemAB	PF02388.11	gi|124028080|ref|YP_001013400.1|	-	0.04	12.6	4.3	0.052	12.2	3.0	1.2	1	0	0	1	1	1	0	FemAB	family
KaiC	PF06745.8	gi|124028080|ref|YP_001013400.1|	-	0.046	12.8	1.4	0.19	10.8	0.7	1.9	1	1	1	2	2	2	0	KaiC
Katanin_con80	PF13925.1	gi|124028080|ref|YP_001013400.1|	-	0.047	13.4	2.8	0.091	12.4	2.0	1.5	1	1	0	1	1	1	0	con80	domain	of	Katanin
HTH_7	PF02796.10	gi|124028080|ref|YP_001013400.1|	-	0.047	13.5	2.7	0.075	12.8	0.1	2.6	2	1	1	3	3	1	0	Helix-turn-helix	domain	of	resolvase
AAA_13	PF13166.1	gi|124028080|ref|YP_001013400.1|	-	0.061	11.7	8.0	0.1	11.0	5.4	1.3	1	1	0	1	1	1	0	AAA	domain
HTH_IclR	PF09339.5	gi|124028080|ref|YP_001013400.1|	-	0.064	12.8	0.2	0.16	11.5	0.1	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_3	PF01381.17	gi|124028080|ref|YP_001013400.1|	-	0.074	12.9	0.3	0.074	12.9	0.2	3.8	3	1	1	4	4	2	0	Helix-turn-helix
bZIP_1	PF00170.16	gi|124028080|ref|YP_001013400.1|	-	0.077	12.9	23.6	1.3	9.0	5.6	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
Reo_sigmaC	PF04582.7	gi|124028080|ref|YP_001013400.1|	-	0.08	12.1	0.2	0.13	11.4	0.1	1.3	1	1	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
DUF4200	PF13863.1	gi|124028080|ref|YP_001013400.1|	-	0.12	12.3	24.5	0.84	9.5	4.8	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
Baculo_PEP_C	PF04513.7	gi|124028080|ref|YP_001013400.1|	-	0.12	12.1	0.3	0.29	10.9	0.1	1.7	2	0	0	2	2	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF4201	PF13870.1	gi|124028080|ref|YP_001013400.1|	-	0.13	11.6	18.4	1.3	8.3	2.9	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Myb_DNA-bind_6	PF13921.1	gi|124028080|ref|YP_001013400.1|	-	0.13	12.3	4.9	0.17	12.0	0.0	2.6	2	1	0	2	2	1	0	Myb-like	DNA-binding	domain
Prefoldin	PF02996.12	gi|124028080|ref|YP_001013400.1|	-	0.18	11.4	14.0	0.41	10.2	5.2	2.4	1	1	1	2	2	2	0	Prefoldin	subunit
Atg14	PF10186.4	gi|124028080|ref|YP_001013400.1|	-	0.18	10.7	14.0	0.4	9.5	9.7	1.5	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Syntaxin	PF00804.20	gi|124028080|ref|YP_001013400.1|	-	0.18	11.9	10.0	1.5	9.0	2.3	2.6	2	1	1	3	3	2	0	Syntaxin
NPV_P10	PF05531.7	gi|124028080|ref|YP_001013400.1|	-	0.2	11.9	1.8	0.93	9.7	1.2	2.2	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Syntaxin-6_N	PF09177.6	gi|124028080|ref|YP_001013400.1|	-	0.23	11.8	9.0	0.7	10.3	5.4	2.3	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
DivIVA	PF05103.8	gi|124028080|ref|YP_001013400.1|	-	0.35	10.9	20.7	0.31	11.0	4.6	2.6	2	1	1	3	3	2	0	DivIVA	protein
Prominin	PF05478.6	gi|124028080|ref|YP_001013400.1|	-	0.36	8.3	4.8	2.5	5.4	3.3	2.0	1	1	0	1	1	1	0	Prominin
PilJ	PF13675.1	gi|124028080|ref|YP_001013400.1|	-	0.36	11.1	5.6	0.36	11.1	2.4	2.0	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Seryl_tRNA_N	PF02403.17	gi|124028080|ref|YP_001013400.1|	-	0.39	10.7	14.0	1.1	9.3	9.0	2.3	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF4349	PF14257.1	gi|124028080|ref|YP_001013400.1|	-	0.42	9.7	16.1	0.72	9.0	11.2	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
CobN-Mg_chel	PF02514.11	gi|124028080|ref|YP_001013400.1|	-	0.44	7.8	7.5	0.55	7.5	5.2	1.0	1	0	0	1	1	1	0	CobN/Magnesium	Chelatase
Nnf1	PF03980.9	gi|124028080|ref|YP_001013400.1|	-	0.44	10.5	15.0	1.8	8.6	2.5	3.0	2	1	1	3	3	3	0	Nnf1
Rab5-bind	PF09311.6	gi|124028080|ref|YP_001013400.1|	-	0.45	10.3	18.0	0.63	9.9	2.9	2.2	1	1	0	2	2	2	0	Rabaptin-like	protein
AAA_27	PF13514.1	gi|124028080|ref|YP_001013400.1|	-	0.46	8.1	21.3	0.19	9.3	10.6	2.0	2	0	0	2	2	2	0	AAA	domain
DUF812	PF05667.6	gi|124028080|ref|YP_001013400.1|	-	0.47	8.8	12.8	1.1	7.7	8.9	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DUF2203	PF09969.4	gi|124028080|ref|YP_001013400.1|	-	0.52	10.5	9.6	4.1	7.6	4.5	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
FlaC_arch	PF05377.6	gi|124028080|ref|YP_001013400.1|	-	0.54	10.1	12.4	6.7	6.6	0.8	3.1	1	1	2	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
FlpD	PF02662.11	gi|124028080|ref|YP_001013400.1|	-	0.58	9.8	2.8	1.4	8.6	1.9	1.6	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
DUF2353	PF09789.4	gi|124028080|ref|YP_001013400.1|	-	0.58	9.3	14.2	1.3	8.2	3.5	2.2	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF883	PF05957.8	gi|124028080|ref|YP_001013400.1|	-	0.59	10.5	12.6	5.1	7.5	6.5	2.4	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
HlyD	PF00529.15	gi|124028080|ref|YP_001013400.1|	-	0.6	9.3	9.1	2.9	7.1	0.2	2.1	2	0	0	2	2	2	0	HlyD	family	secretion	protein
Fib_alpha	PF08702.5	gi|124028080|ref|YP_001013400.1|	-	0.61	10.1	4.7	1.5	8.9	1.6	1.9	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Orthopox_A5L	PF06193.6	gi|124028080|ref|YP_001013400.1|	-	0.64	9.9	3.8	2.5	8.0	2.6	2.0	1	1	0	1	1	1	0	Orthopoxvirus	A5L	protein-like
DUF2252	PF10009.4	gi|124028080|ref|YP_001013400.1|	-	0.65	8.8	4.3	0.33	9.7	1.5	1.5	2	0	0	2	2	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2252)
DUF4047	PF13256.1	gi|124028080|ref|YP_001013400.1|	-	0.68	9.8	8.5	1.2	9.1	5.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4047)
TBPIP	PF07106.8	gi|124028080|ref|YP_001013400.1|	-	0.69	9.4	15.9	1.1	8.8	10.0	2.1	2	1	0	2	2	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Sigma70_ECF	PF07638.6	gi|124028080|ref|YP_001013400.1|	-	0.76	9.4	9.6	1.9	8.1	0.0	2.4	2	0	0	2	2	2	0	ECF	sigma	factor
ERM	PF00769.14	gi|124028080|ref|YP_001013400.1|	-	0.81	9.1	19.9	1.4	8.3	13.8	1.4	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
PIN_4	PF13638.1	gi|124028080|ref|YP_001013400.1|	-	0.83	9.7	4.1	1.6	8.8	2.6	1.6	1	1	0	1	1	1	0	PIN	domain
PilO	PF04350.8	gi|124028080|ref|YP_001013400.1|	-	0.84	9.5	9.3	1.3	8.8	5.1	2.1	1	1	1	2	2	2	0	Pilus	assembly	protein,	PilO
DUF4446	PF14584.1	gi|124028080|ref|YP_001013400.1|	-	0.86	9.4	9.3	5	6.9	3.6	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Spc24	PF08286.6	gi|124028080|ref|YP_001013400.1|	-	0.89	9.2	14.2	5	6.8	2.5	2.6	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
Lipoprotein_7	PF01540.11	gi|124028080|ref|YP_001013400.1|	-	0.95	8.4	6.2	0.51	9.3	2.9	1.4	2	0	0	2	2	1	0	Adhesin	lipoprotein
TMPIT	PF07851.8	gi|124028080|ref|YP_001013400.1|	-	1	8.3	7.4	1.6	7.7	5.1	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
FH2	PF02181.18	gi|124028080|ref|YP_001013400.1|	-	1.1	8.1	8.0	1.7	7.4	5.5	1.3	1	0	0	1	1	1	0	Formin	Homology	2	Domain
TMF_DNA_bd	PF12329.3	gi|124028080|ref|YP_001013400.1|	-	1.1	9.1	22.2	1.8	8.3	9.7	2.6	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF4208	PF13907.1	gi|124028080|ref|YP_001013400.1|	-	1.1	9.4	10.2	2.2	8.5	6.0	2.2	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4208)
Erp_C	PF06780.6	gi|124028080|ref|YP_001013400.1|	-	1.2	9.0	11.7	3.9	7.3	8.1	1.9	1	1	0	1	1	1	0	Erp	protein	C-terminus
AATF-Che1	PF13339.1	gi|124028080|ref|YP_001013400.1|	-	1.4	9.0	9.6	1.9	8.6	6.0	1.6	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
HemX	PF04375.9	gi|124028080|ref|YP_001013400.1|	-	1.7	7.1	9.9	3.5	6.1	6.9	1.6	1	1	0	1	1	1	0	HemX
Prefoldin_2	PF01920.15	gi|124028080|ref|YP_001013400.1|	-	1.7	8.4	24.1	1.7	8.4	1.5	3.0	2	1	1	3	3	2	0	Prefoldin	subunit
KfrA_N	PF11740.3	gi|124028080|ref|YP_001013400.1|	-	1.7	9.0	27.3	2.1	8.8	0.2	3.2	2	1	1	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
HSP70	PF00012.15	gi|124028080|ref|YP_001013400.1|	-	1.8	6.3	5.7	2.2	6.1	3.9	1.2	1	0	0	1	1	1	0	Hsp70	protein
ATG16	PF08614.6	gi|124028080|ref|YP_001013400.1|	-	1.8	8.3	16.3	3.8	7.2	10.9	1.6	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Phage_GP20	PF06810.6	gi|124028080|ref|YP_001013400.1|	-	2	7.8	14.1	8.6	5.7	8.6	2.1	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
HAP1_N	PF04849.8	gi|124028080|ref|YP_001013400.1|	-	2.3	7.0	20.0	6.9	5.5	13.4	1.8	1	1	0	1	1	1	0	HAP1	N-terminal	conserved	region
Snapin_Pallidin	PF14712.1	gi|124028080|ref|YP_001013400.1|	-	2.5	8.4	12.0	6.3	7.1	3.3	2.4	1	1	0	1	1	1	0	Snapin/Pallidin
PEARLI-4	PF05278.7	gi|124028080|ref|YP_001013400.1|	-	2.5	7.3	14.8	4.3	6.6	10.3	1.3	1	0	0	1	1	1	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
Ax_dynein_light	PF10211.4	gi|124028080|ref|YP_001013400.1|	-	2.6	7.8	17.4	4.8	6.9	4.7	2.5	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
DUF2730	PF10805.3	gi|124028080|ref|YP_001013400.1|	-	2.7	7.7	9.8	20	4.9	6.7	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Bap31	PF05529.7	gi|124028080|ref|YP_001013400.1|	-	3	7.2	9.1	16	4.8	6.3	2.0	1	1	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
SlyX	PF04102.7	gi|124028080|ref|YP_001013400.1|	-	3	8.2	12.2	15	6.0	1.6	3.2	1	1	2	3	3	3	0	SlyX
Nsp1_C	PF05064.8	gi|124028080|ref|YP_001013400.1|	-	3.1	7.4	10.3	1.9	8.1	5.2	1.9	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
TSC22	PF01166.13	gi|124028080|ref|YP_001013400.1|	-	3.1	7.8	26.1	0.3	11.0	4.3	3.4	1	1	2	3	3	3	0	TSC-22/dip/bun	family
Sec8_exocyst	PF04048.9	gi|124028080|ref|YP_001013400.1|	-	3.1	7.4	10.0	3.4	7.2	2.5	2.4	2	1	1	3	3	2	0	Sec8	exocyst	complex	component	specific	domain
DUF607	PF04678.8	gi|124028080|ref|YP_001013400.1|	-	3.1	7.6	11.3	2.8e+02	1.3	7.8	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF607
Occludin_ELL	PF07303.8	gi|124028080|ref|YP_001013400.1|	-	3.2	8.5	11.1	7.4	7.3	3.2	2.8	2	1	1	3	3	2	0	Occludin	homology	domain
UPF0184	PF03670.8	gi|124028080|ref|YP_001013400.1|	-	3.3	7.9	11.8	0.25	11.5	2.7	2.3	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
Bacillus_HBL	PF05791.6	gi|124028080|ref|YP_001013400.1|	-	3.4	6.9	7.3	1.9	7.7	1.5	2.4	2	1	1	3	3	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
Rotamase	PF00639.16	gi|124028080|ref|YP_001013400.1|	-	3.5	8.4	6.4	8.8	7.1	3.6	2.4	1	1	1	2	2	1	0	PPIC-type	PPIASE	domain
IFT57	PF10498.4	gi|124028080|ref|YP_001013400.1|	-	3.5	6.2	11.2	5.5	5.6	7.8	1.3	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
MAD	PF05557.8	gi|124028080|ref|YP_001013400.1|	-	3.6	5.5	21.2	4.8	5.1	4.0	1.9	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
COG2	PF06148.6	gi|124028080|ref|YP_001013400.1|	-	3.8	7.3	11.5	6.2	6.7	6.5	2.2	2	1	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AcylCoA_dehyd_C	PF12186.3	gi|124028080|ref|YP_001013400.1|	-	4	7.3	9.7	6.9	6.5	3.4	2.3	1	1	1	2	2	2	0	Acyl-CoA	dehydrogenase	C	terminal
Fzo_mitofusin	PF04799.8	gi|124028080|ref|YP_001013400.1|	-	4	6.7	9.8	2.7	7.3	2.0	2.3	1	1	1	2	2	2	0	fzo-like	conserved	region
CENP-H	PF05837.7	gi|124028080|ref|YP_001013400.1|	-	4.2	7.5	14.7	4.2	7.5	8.4	2.2	2	1	0	2	2	1	0	Centromere	protein	H	(CENP-H)
TEX13	PF15186.1	gi|124028080|ref|YP_001013400.1|	-	4.4	6.8	10.7	8.4	5.9	7.0	1.7	1	1	0	1	1	1	0	Testis-expressed	sequence	13	protein	family
Hemerythrin	PF01814.18	gi|124028080|ref|YP_001013400.1|	-	5.3	7.2	15.2	36	4.5	10.5	2.4	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
DegS	PF05384.6	gi|124028080|ref|YP_001013400.1|	-	5.5	6.1	17.6	2.2	7.4	2.4	2.5	1	1	1	2	2	2	0	Sensor	protein	DegS
RPA_interact_M	PF14767.1	gi|124028080|ref|YP_001013400.1|	-	5.7	7.7	17.7	8.3	7.2	11.6	1.9	1	1	1	2	2	2	0	Replication	protein	A	interacting	middle
Halogen_Hydrol	PF10112.4	gi|124028080|ref|YP_001013400.1|	-	5.8	6.2	7.8	1.3	8.3	1.7	2.4	2	1	1	3	3	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
Sas10_Utp3	PF04000.10	gi|124028080|ref|YP_001013400.1|	-	5.8	7.1	7.6	10	6.3	1.1	2.5	1	1	1	2	2	2	0	Sas10/Utp3/C1D	family
FlgN	PF05130.7	gi|124028080|ref|YP_001013400.1|	-	6.8	6.9	15.4	3.3	7.9	1.3	2.4	1	1	1	2	2	2	0	FlgN	protein
Med4	PF10018.4	gi|124028080|ref|YP_001013400.1|	-	6.9	6.0	13.5	6.1	6.1	7.8	2.0	1	1	2	3	3	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
DUF4140	PF13600.1	gi|124028080|ref|YP_001013400.1|	-	7.1	7.1	19.4	9.1	6.7	6.2	2.9	1	1	2	3	3	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
ORF6C	PF10552.4	gi|124028080|ref|YP_001013400.1|	-	7.2	6.3	9.5	7.4	6.3	2.1	2.7	1	1	1	2	2	2	0	ORF6C	domain
Fmp27_WPPW	PF10359.4	gi|124028080|ref|YP_001013400.1|	-	7.8	4.7	9.9	10	4.3	6.9	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
HALZ	PF02183.13	gi|124028080|ref|YP_001013400.1|	-	8	6.2	20.9	11	5.8	4.7	2.8	1	1	1	2	2	2	0	Homeobox	associated	leucine	zipper
Cob_adeno_trans	PF01923.13	gi|124028080|ref|YP_001013400.1|	-	8.9	6.0	7.8	9.8	5.9	4.3	1.7	1	1	0	2	2	1	0	Cobalamin	adenosyltransferase
Erythro_esteras	PF05139.9	gi|124028080|ref|YP_001013400.1|	-	8.9	5.3	7.9	19	4.2	5.3	1.6	1	1	0	1	1	1	0	Erythromycin	esterase
HR1	PF02185.11	gi|124028080|ref|YP_001013400.1|	-	9.3	6.0	20.2	1.8	8.3	1.7	3.4	2	1	1	3	3	2	0	Hr1	repeat
Rootletin	PF15035.1	gi|124028080|ref|YP_001013400.1|	-	9.7	6.1	19.5	94	2.9	13.6	2.3	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
HTH_Tnp_1	PF01527.15	gi|124028080|ref|YP_001013400.1|	-	9.8	6.2	9.5	4e+02	1.0	6.6	3.0	1	1	0	1	1	1	0	Transposase
HDV_ag	PF01517.13	gi|124028080|ref|YP_001013400.1|	-	10	5.7	14.5	0.55	9.8	4.3	2.2	1	1	1	2	2	2	0	Hepatitis	delta	virus	delta	antigen
Toxin_9	PF02819.10	gi|124028081|ref|YP_001013401.1|	-	0.098	12.7	5.8	0.15	12.1	4.0	1.3	1	0	0	1	1	1	0	Spider	toxin
HTH_20	PF12840.2	gi|124028083|ref|YP_001013403.1|	-	7.9e-06	25.5	0.3	1.1e-05	25.1	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|124028083|ref|YP_001013403.1|	-	0.00014	21.4	0.4	0.00035	20.1	0.3	1.7	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Penicillinase_R	PF03965.11	gi|124028083|ref|YP_001013403.1|	-	0.00021	21.3	0.0	0.00031	20.7	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
TrmB	PF01978.14	gi|124028083|ref|YP_001013403.1|	-	0.00026	20.6	0.3	0.00045	19.8	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|124028083|ref|YP_001013403.1|	-	0.00027	20.2	0.5	0.00047	19.4	0.3	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
PaaX	PF07848.7	gi|124028083|ref|YP_001013403.1|	-	0.012	15.6	0.1	0.016	15.2	0.1	1.3	1	0	0	1	1	1	0	PaaX-like	protein
GntR	PF00392.16	gi|124028083|ref|YP_001013403.1|	-	0.055	12.9	0.2	0.1	12.0	0.2	1.5	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|124028083|ref|YP_001013403.1|	-	0.088	13.1	0.1	0.21	11.9	0.1	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4423	PF14394.1	gi|124028083|ref|YP_001013403.1|	-	0.099	12.1	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF3267	PF11667.3	gi|124028084|ref|YP_001013404.1|	-	0.0032	17.6	0.9	0.0051	17.0	0.6	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3267)
UNC-93	PF05978.11	gi|124028084|ref|YP_001013404.1|	-	0.0093	15.4	1.0	0.076	12.5	0.1	2.4	2	1	1	3	3	3	1	Ion	channel	regulatory	protein	UNC-93
HPPK	PF01288.15	gi|124028085|ref|YP_001013405.1|	-	0.048	13.4	0.5	0.068	12.9	0.4	1.2	1	0	0	1	1	1	0	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase	(HPPK)
NAD_binding_8	PF13450.1	gi|124028086|ref|YP_001013406.1|	-	1e-05	25.4	0.1	1e-05	25.4	0.1	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|124028086|ref|YP_001013406.1|	-	1.5e-05	24.2	0.3	2.5e-05	23.4	0.0	1.5	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.19	gi|124028086|ref|YP_001013406.1|	-	0.0004	19.3	0.2	0.00098	18.1	0.1	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|124028086|ref|YP_001013406.1|	-	0.0039	16.8	0.0	0.0056	16.3	0.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|124028086|ref|YP_001013406.1|	-	0.012	15.5	0.0	0.024	14.5	0.0	1.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|124028086|ref|YP_001013406.1|	-	0.023	14.4	0.0	0.039	13.6	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.22	gi|124028086|ref|YP_001013406.1|	-	0.033	14.6	0.0	0.077	13.4	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|124028086|ref|YP_001013406.1|	-	0.054	12.9	0.1	0.093	12.1	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DUF2203	PF09969.4	gi|124028087|ref|YP_001013407.1|	-	0.033	14.3	1.1	0.07	13.3	0.7	1.5	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Laminin_II	PF06009.7	gi|124028087|ref|YP_001013407.1|	-	0.052	13.2	2.1	0.081	12.6	0.5	1.8	2	0	0	2	2	2	0	Laminin	Domain	II
Terminase_2	PF03592.11	gi|124028087|ref|YP_001013407.1|	-	0.068	13.4	1.6	0.1	12.8	1.1	1.4	1	0	0	1	1	1	0	Terminase	small	subunit
FKBP_C	PF00254.23	gi|124028087|ref|YP_001013407.1|	-	0.14	12.2	0.1	9.8	6.2	0.0	2.2	2	0	0	2	2	2	0	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Adenosine_kin	PF04008.9	gi|124028089|ref|YP_001013409.1|	-	1.5e-78	261.6	0.3	1.8e-78	261.4	0.2	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
HHH_5	PF14520.1	gi|124028089|ref|YP_001013409.1|	-	0.029	14.5	0.1	0.22	11.7	0.1	2.3	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
AP_endonuc_2	PF01261.19	gi|124028089|ref|YP_001013409.1|	-	0.033	13.4	0.0	0.034	13.4	0.0	1.2	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
BpuSI_N	PF15516.1	gi|124028090|ref|YP_001013410.1|	-	0.12	12.0	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	BpuSI	N-terminal	domain
zf-C2H2_4	PF13894.1	gi|124028091|ref|YP_001013411.1|	-	0.012	15.9	0.2	0.019	15.2	0.1	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
MutL_C	PF08676.6	gi|124028092|ref|YP_001013412.1|	-	0.053	13.1	0.1	0.34	10.5	0.0	2.0	2	0	0	2	2	2	0	MutL	C	terminal	dimerisation	domain
DUF900	PF05990.7	gi|124028092|ref|YP_001013412.1|	-	0.083	12.1	0.0	0.13	11.5	0.0	1.4	1	1	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
NMD3	PF04981.8	gi|124028093|ref|YP_001013413.1|	-	2.7e-45	154.3	0.0	3.1e-45	154.1	0.0	1.0	1	0	0	1	1	1	1	NMD3	family
DZR	PF12773.2	gi|124028093|ref|YP_001013413.1|	-	0.015	15.1	4.7	0.75	9.6	2.6	2.8	2	1	1	3	3	3	0	Double	zinc	ribbon
C1_1	PF00130.17	gi|124028093|ref|YP_001013413.1|	-	0.1	12.3	3.8	0.37	10.5	0.2	2.8	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Zn_ribbon_recom	PF13408.1	gi|124028093|ref|YP_001013413.1|	-	0.17	12.1	2.4	13	6.1	0.1	2.7	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|124028093|ref|YP_001013413.1|	-	0.4	10.3	5.2	1.7	8.3	0.1	3.1	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-TFIIB	PF13453.1	gi|124028093|ref|YP_001013413.1|	-	1.4	8.1	10.3	1.5	8.0	3.0	2.9	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
DUF2276	PF10040.4	gi|124028094|ref|YP_001013414.1|	-	0.017	15.3	0.0	0.02	15.0	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2276)
LTD	PF00932.14	gi|124028095|ref|YP_001013415.1|	-	0.15	12.1	0.0	0.22	11.6	0.0	1.2	1	0	0	1	1	1	0	Lamin	Tail	Domain
Radical_SAM	PF04055.16	gi|124028096|ref|YP_001013416.1|	-	1.2e-09	38.6	0.0	3.2e-09	37.1	0.0	1.7	1	1	1	2	2	2	1	Radical	SAM	superfamily
DUF1848	PF08902.6	gi|124028096|ref|YP_001013416.1|	-	5.2e-09	36.0	0.6	0.0073	15.8	0.0	2.5	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
Milton	PF12448.3	gi|124028096|ref|YP_001013416.1|	-	0.0076	16.4	0.0	0.6	10.2	0.0	2.2	2	0	0	2	2	2	1	Kinesin	associated	protein
AP_endonuc_2	PF01261.19	gi|124028096|ref|YP_001013416.1|	-	0.046	13.0	0.0	0.074	12.3	0.0	1.5	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Amidohydro_4	PF13147.1	gi|124028096|ref|YP_001013416.1|	-	0.1	12.6	0.5	1.5	8.8	0.3	2.1	1	1	0	1	1	1	0	Amidohydrolase
FXa_inhibition	PF14670.1	gi|124028096|ref|YP_001013416.1|	-	5.9	7.1	8.9	15	5.8	0.1	2.9	2	1	1	3	3	3	0	Coagulation	Factor	Xa	inhibitory	site
SIS	PF01380.17	gi|124028097|ref|YP_001013417.1|	-	6.9e-20	70.9	0.0	1.1e-19	70.3	0.0	1.3	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.1	gi|124028097|ref|YP_001013417.1|	-	8.8e-13	48.1	2.7	1.9e-07	30.8	0.6	2.2	1	1	1	2	2	2	2	SIS	domain
PRMT5	PF05185.11	gi|124028097|ref|YP_001013417.1|	-	0.023	13.6	2.3	1	8.1	0.1	2.1	1	1	1	2	2	2	0	PRMT5	arginine-N-methyltransferase
CitX	PF03802.9	gi|124028097|ref|YP_001013417.1|	-	0.087	12.2	0.0	0.18	11.2	0.0	1.6	2	0	0	2	2	2	0	Apo-citrate	lyase	phosphoribosyl-dephospho-CoA	transferase
DSPc	PF00782.15	gi|124028097|ref|YP_001013417.1|	-	0.18	11.4	0.5	0.78	9.3	0.3	1.9	1	1	0	1	1	1	0	Dual	specificity	phosphatase,	catalytic	domain
tRNA-synt_1	PF00133.17	gi|124028098|ref|YP_001013418.1|	-	4.2e-55	186.8	0.0	3.7e-45	154.0	0.0	2.9	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|124028098|ref|YP_001013418.1|	-	1.3e-23	83.4	0.1	3e-23	82.2	0.1	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|124028098|ref|YP_001013418.1|	-	2.6e-22	79.0	0.0	7.4e-11	41.3	0.0	3.4	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|124028098|ref|YP_001013418.1|	-	1.7e-12	47.0	0.0	2.7e-08	33.2	0.0	2.7	2	1	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.1	gi|124028098|ref|YP_001013418.1|	-	8.9e-11	41.4	0.0	1.7e-10	40.4	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
HTH_23	PF13384.1	gi|124028098|ref|YP_001013418.1|	-	0.005	16.4	1.5	0.02	14.5	1.1	2.1	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|124028098|ref|YP_001013418.1|	-	0.049	13.6	0.9	0.16	11.9	0.6	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
CMS1	PF14617.1	gi|124028099|ref|YP_001013419.1|	-	0.18	10.8	0.0	0.29	10.1	0.0	1.3	1	0	0	1	1	1	0	U3-containing	90S	pre-ribosomal	complex	subunit
Metallophos_2	PF12850.2	gi|124028100|ref|YP_001013420.1|	-	1.1e-11	44.8	0.0	1.6e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|124028100|ref|YP_001013420.1|	-	9.2e-10	38.2	0.0	2.1e-09	37.0	0.0	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|124028100|ref|YP_001013420.1|	-	0.017	14.2	0.1	0.15	11.1	0.0	2.0	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
TatD_DNase	PF01026.16	gi|124028101|ref|YP_001013421.1|	-	1.4e-43	148.9	0.1	1.7e-43	148.7	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
Amidohydro_2	PF04909.9	gi|124028101|ref|YP_001013421.1|	-	0.00079	19.0	0.0	0.04	13.4	0.0	2.0	1	1	1	2	2	2	2	Amidohydrolase
Radical_SAM	PF04055.16	gi|124028102|ref|YP_001013422.1|	-	1.7e-22	80.3	0.0	1.7e-22	80.3	0.0	2.3	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|124028102|ref|YP_001013422.1|	-	1.8e-08	34.4	0.5	8.4e-08	32.2	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|124028102|ref|YP_001013422.1|	-	6.5e-07	29.5	0.4	1.5e-06	28.3	0.0	1.8	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|124028103|ref|YP_001013423.1|	-	4.7e-16	59.4	0.0	1.1e-15	58.2	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
HHH_3	PF12836.2	gi|124028103|ref|YP_001013423.1|	-	0.01	15.7	0.0	0.024	14.5	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Radical_SAM	PF04055.16	gi|124028104|ref|YP_001013424.1|	-	1.1e-12	48.4	0.1	2.5e-12	47.2	0.1	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|124028104|ref|YP_001013424.1|	-	4.3e-07	30.1	0.0	7.3e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|124028104|ref|YP_001013424.1|	-	7.9e-06	25.8	0.0	3.9e-05	23.6	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Rnk_N	PF14760.1	gi|124028105|ref|YP_001013425.1|	-	0.027	14.5	0.2	2.2	8.4	0.0	2.5	2	1	0	2	2	2	0	Rnk	N-terminus
Spectrin	PF00435.16	gi|124028105|ref|YP_001013425.1|	-	0.078	13.2	0.1	0.13	12.5	0.1	1.3	1	0	0	1	1	1	0	Spectrin	repeat
tRNA-synt_2b	PF00587.20	gi|124028106|ref|YP_001013426.1|	-	2.2e-35	121.8	0.0	3.7e-35	121.0	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|124028106|ref|YP_001013426.1|	-	2.4e-22	78.9	8.1	5.1e-22	77.9	5.6	1.5	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
DUF342	PF03961.8	gi|124028106|ref|YP_001013426.1|	-	0.0016	16.9	1.0	0.0029	16.1	0.7	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF342)
COG6	PF06419.6	gi|124028106|ref|YP_001013426.1|	-	0.021	13.0	0.5	0.03	12.4	0.3	1.1	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
Mnd1	PF03962.10	gi|124028106|ref|YP_001013426.1|	-	0.028	14.1	5.4	0.047	13.3	3.7	1.3	1	0	0	1	1	1	0	Mnd1	family
APG6	PF04111.7	gi|124028106|ref|YP_001013426.1|	-	0.045	12.8	3.6	0.079	11.9	2.5	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
GAS	PF13851.1	gi|124028106|ref|YP_001013426.1|	-	0.087	12.0	4.8	0.15	11.2	3.4	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Syntaxin	PF00804.20	gi|124028106|ref|YP_001013426.1|	-	0.088	12.9	2.2	0.15	12.2	1.5	1.3	1	0	0	1	1	1	0	Syntaxin
CCDC-167	PF15188.1	gi|124028106|ref|YP_001013426.1|	-	1.3	8.9	7.9	2.6	8.0	5.5	1.5	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
DivIVA	PF05103.8	gi|124028106|ref|YP_001013426.1|	-	3.2	7.8	7.3	3.9	7.5	0.2	2.4	1	1	1	2	2	2	0	DivIVA	protein
Atg14	PF10186.4	gi|124028106|ref|YP_001013426.1|	-	3.6	6.4	6.1	5.8	5.7	4.2	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF59	PF01883.14	gi|124028107|ref|YP_001013427.1|	-	2e-17	62.9	0.5	2.8e-17	62.4	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
MoCF_biosynth	PF00994.19	gi|124028108|ref|YP_001013428.1|	-	8.9e-37	125.6	0.0	1.3e-36	125.1	0.0	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
SHMT	PF00464.14	gi|124028109|ref|YP_001013429.1|	-	1.7e-69	234.1	0.1	2.2e-69	233.7	0.1	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.16	gi|124028109|ref|YP_001013429.1|	-	2.4e-12	46.6	0.1	3e-12	46.2	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|124028109|ref|YP_001013429.1|	-	1.9e-08	33.6	0.0	4.1e-08	32.5	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|124028109|ref|YP_001013429.1|	-	1.9e-05	23.5	0.0	3.6e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|124028109|ref|YP_001013429.1|	-	8.8e-05	21.7	0.2	0.00017	20.7	0.2	1.6	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.15	gi|124028109|ref|YP_001013429.1|	-	0.00052	18.4	0.0	0.0017	16.6	0.0	1.8	1	1	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DUF3469	PF11952.3	gi|124028109|ref|YP_001013429.1|	-	0.014	15.0	0.1	0.11	12.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3469)
SelA	PF03841.8	gi|124028109|ref|YP_001013429.1|	-	0.086	11.5	0.0	0.12	11.1	0.0	1.3	1	0	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
Thioredoxin_3	PF13192.1	gi|124028111|ref|YP_001013431.1|	-	0.00048	19.8	0.6	0.00098	18.8	0.4	1.7	1	1	0	1	1	1	1	Thioredoxin	domain
PfkB	PF00294.19	gi|124028112|ref|YP_001013432.1|	-	5.6e-06	25.7	0.8	7.7e-06	25.2	0.5	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Leader_Trp	PF08255.6	gi|124028112|ref|YP_001013432.1|	-	0.24	11.1	1.5	0.49	10.1	0.3	2.2	2	0	0	2	2	2	0	Trp-operon	Leader	Peptide
zf-C2H2_4	PF13894.1	gi|124028113|ref|YP_001013433.1|	-	0.003	17.7	0.0	0.0045	17.2	0.0	1.3	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|124028113|ref|YP_001013433.1|	-	0.048	14.0	0.0	0.071	13.4	0.0	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
DAO	PF01266.19	gi|124028114|ref|YP_001013434.1|	-	9.2e-09	34.6	0.0	0.0021	17.0	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|124028114|ref|YP_001013434.1|	-	9.7e-06	24.8	0.0	0.26	10.3	0.0	3.1	2	1	0	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|124028114|ref|YP_001013434.1|	-	4.5e-05	22.7	0.0	0.092	11.8	0.0	2.4	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|124028114|ref|YP_001013434.1|	-	0.00069	18.5	0.0	0.0012	17.8	0.0	1.5	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.9	gi|124028114|ref|YP_001013434.1|	-	0.0012	17.6	0.0	0.039	12.5	0.0	2.7	2	1	0	2	2	2	1	Tryptophan	halogenase
ThiF	PF00899.16	gi|124028114|ref|YP_001013434.1|	-	0.012	15.4	0.1	0.024	14.4	0.1	1.4	1	0	0	1	1	1	0	ThiF	family
Pyr_redox_2	PF07992.9	gi|124028114|ref|YP_001013434.1|	-	0.02	14.7	0.0	0.041	13.7	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|124028114|ref|YP_001013434.1|	-	0.023	13.5	0.0	0.86	8.3	0.0	2.2	2	0	0	2	2	2	0	FAD	binding	domain
Thi4	PF01946.12	gi|124028114|ref|YP_001013434.1|	-	0.039	13.0	0.0	0.14	11.2	0.0	1.9	2	0	0	2	2	2	0	Thi4	family
Lycopene_cycl	PF05834.7	gi|124028114|ref|YP_001013434.1|	-	0.1	11.4	0.0	0.29	10.0	0.0	1.7	1	1	0	1	1	1	0	Lycopene	cyclase	protein
SE	PF08491.5	gi|124028114|ref|YP_001013434.1|	-	0.12	11.1	0.0	0.2	10.4	0.0	1.3	1	0	0	1	1	1	0	Squalene	epoxidase
HSP20	PF00011.16	gi|124028115|ref|YP_001013435.1|	-	3.6e-14	52.4	5.3	6.1e-13	48.5	3.7	2.0	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.6	gi|124028115|ref|YP_001013435.1|	-	9.6e-07	28.5	0.2	1.2e-06	28.2	0.2	1.1	1	0	0	1	1	1	1	GvpH
CS	PF04969.11	gi|124028115|ref|YP_001013435.1|	-	0.00018	21.9	1.6	0.00025	21.5	1.1	1.2	1	0	0	1	1	1	1	CS	domain
DUF2807	PF10988.3	gi|124028115|ref|YP_001013435.1|	-	1.3	8.4	4.8	5	6.6	3.4	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2807)
zf-ZPR1	PF03367.8	gi|124028116|ref|YP_001013436.1|	-	2.6e-35	120.9	0.0	3.3e-35	120.6	0.0	1.1	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
Zn-ribbon_8	PF09723.5	gi|124028116|ref|YP_001013436.1|	-	0.0025	17.7	0.5	0.98	9.4	0.0	2.6	2	0	0	2	2	2	2	Zinc	ribbon	domain
zf-H2C2_2	PF13465.1	gi|124028116|ref|YP_001013436.1|	-	0.018	15.3	0.9	5.1	7.5	0.0	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
Lar_restr_allev	PF14354.1	gi|124028116|ref|YP_001013436.1|	-	0.03	14.6	0.1	0.061	13.6	0.0	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Porphobil_deamC	PF03900.10	gi|124028116|ref|YP_001013436.1|	-	0.04	14.0	0.0	0.098	12.7	0.0	1.7	1	1	0	1	1	1	0	Porphobilinogen	deaminase,	C-terminal	domain
UPF0547	PF10571.4	gi|124028116|ref|YP_001013436.1|	-	0.074	12.7	2.9	0.94	9.2	2.0	2.3	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|124028116|ref|YP_001013436.1|	-	0.08	12.1	0.3	0.25	10.5	0.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Elf1	PF05129.8	gi|124028116|ref|YP_001013436.1|	-	0.099	12.3	0.1	0.2	11.3	0.1	1.5	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
RHH_1	PF01402.16	gi|124028117|ref|YP_001013437.1|	-	2.9e-08	33.2	0.2	6e-08	32.2	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF2299	PF10061.4	gi|124028117|ref|YP_001013437.1|	-	0.033	13.6	0.0	0.04	13.3	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2299)
TrmB	PF01978.14	gi|124028118|ref|YP_001013438.1|	-	2.8e-13	49.3	0.1	3.8e-13	48.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|124028118|ref|YP_001013438.1|	-	2.4e-10	39.9	0.0	3.9e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|124028118|ref|YP_001013438.1|	-	4.6e-09	35.8	0.0	7.7e-09	35.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|124028118|ref|YP_001013438.1|	-	1e-07	31.5	0.1	1e-06	28.3	0.0	2.1	2	1	0	2	2	2	1	MarR	family
TFIIE_alpha	PF02002.12	gi|124028118|ref|YP_001013438.1|	-	1.1e-07	31.3	0.0	1.7e-07	30.7	0.0	1.4	1	1	0	1	1	1	1	TFIIE	alpha	subunit
HTH_24	PF13412.1	gi|124028118|ref|YP_001013438.1|	-	2.1e-07	30.2	0.9	3.8e-07	29.3	0.0	1.9	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|124028118|ref|YP_001013438.1|	-	1.2e-05	25.5	0.0	5.1e-05	23.5	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.7	gi|124028118|ref|YP_001013438.1|	-	1.3e-05	24.6	0.5	3.4e-05	23.2	0.0	1.8	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|124028118|ref|YP_001013438.1|	-	5.2e-05	22.9	0.0	0.00013	21.7	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|124028118|ref|YP_001013438.1|	-	0.00075	19.0	0.0	0.0015	18.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|124028118|ref|YP_001013438.1|	-	0.00083	19.2	0.1	0.0037	17.1	0.0	2.1	1	1	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_29	PF13551.1	gi|124028118|ref|YP_001013438.1|	-	0.0013	18.8	0.0	0.0017	18.4	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_36	PF13730.1	gi|124028118|ref|YP_001013438.1|	-	0.0015	18.5	0.0	0.0031	17.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|124028118|ref|YP_001013438.1|	-	0.0027	17.3	0.7	0.019	14.5	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
Replic_Relax	PF13814.1	gi|124028118|ref|YP_001013438.1|	-	0.0045	16.8	0.0	0.0057	16.5	0.0	1.2	1	0	0	1	1	1	1	Replication-relaxation
HTH_Crp_2	PF13545.1	gi|124028118|ref|YP_001013438.1|	-	0.0049	16.6	0.0	0.0098	15.6	0.0	1.6	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|124028118|ref|YP_001013438.1|	-	0.0057	16.1	0.2	0.011	15.2	0.0	1.6	2	0	0	2	2	1	1	AsnC-type	helix-turn-helix	domain
PadR	PF03551.9	gi|124028118|ref|YP_001013438.1|	-	0.0068	16.1	0.0	0.013	15.2	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
GntR	PF00392.16	gi|124028118|ref|YP_001013438.1|	-	0.021	14.2	0.0	0.036	13.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_9	PF08221.6	gi|124028118|ref|YP_001013438.1|	-	0.027	14.3	0.0	0.048	13.5	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
ATPgrasp_Ter	PF15632.1	gi|124028118|ref|YP_001013438.1|	-	0.028	13.1	0.0	0.033	12.9	0.0	1.2	1	0	0	1	1	1	0	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
HTH_7	PF02796.10	gi|124028118|ref|YP_001013438.1|	-	0.031	14.1	0.0	0.072	12.9	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HxlR	PF01638.12	gi|124028118|ref|YP_001013438.1|	-	0.037	13.6	0.0	0.065	12.8	0.0	1.5	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF4423	PF14394.1	gi|124028118|ref|YP_001013438.1|	-	0.038	13.5	0.0	0.064	12.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
RP-C	PF03428.8	gi|124028118|ref|YP_001013438.1|	-	0.061	12.7	0.1	0.51	9.7	0.0	2.0	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
DUF717	PF05338.7	gi|124028118|ref|YP_001013438.1|	-	0.07	13.0	0.6	0.35	10.8	0.0	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF717)
Mga	PF05043.8	gi|124028118|ref|YP_001013438.1|	-	0.081	13.2	0.0	0.16	12.3	0.0	1.5	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
Rio2_N	PF09202.6	gi|124028118|ref|YP_001013438.1|	-	0.083	12.9	0.1	0.2	11.7	0.0	1.6	2	0	0	2	2	1	0	Rio2,	N-terminal
Penicillinase_R	PF03965.11	gi|124028118|ref|YP_001013438.1|	-	0.1	12.6	0.1	0.16	12.0	0.1	1.6	1	1	0	1	1	1	0	Penicillinase	repressor
Rrf2	PF02082.15	gi|124028118|ref|YP_001013438.1|	-	0.1	12.6	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
RuvB_C	PF05491.8	gi|124028118|ref|YP_001013438.1|	-	0.13	11.9	0.0	0.29	10.7	0.0	1.6	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	C-terminus
DUF95	PF01944.12	gi|124028119|ref|YP_001013439.1|	-	2.5e-24	85.8	12.3	3.2e-24	85.4	8.6	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	DUF95
DUF3693	PF12472.3	gi|124028119|ref|YP_001013439.1|	-	0.11	12.1	6.1	2	8.0	0.5	2.6	2	0	0	2	2	2	0	Phage	related	protein
TatD_DNase	PF01026.16	gi|124028120|ref|YP_001013440.1|	-	8.6e-20	71.0	0.0	1e-19	70.7	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
VWA_2	PF13519.1	gi|124028121|ref|YP_001013441.1|	-	4.9e-10	39.7	0.6	1.1e-08	35.3	0.0	2.2	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|124028121|ref|YP_001013441.1|	-	1.9e-07	30.4	0.2	7e-07	28.6	0.0	2.0	2	1	0	2	2	2	1	VWA	domain	containing	CoxE-like	protein
VWA_3	PF13768.1	gi|124028121|ref|YP_001013441.1|	-	6.5e-07	29.1	0.1	2.5e-06	27.2	0.0	2.0	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
CobT_C	PF11775.3	gi|124028121|ref|YP_001013441.1|	-	0.026	13.9	0.1	0.45	9.9	0.0	2.3	2	0	0	2	2	2	0	Cobalamin	biosynthesis	protein	CobT	VWA	domain
AAA_5	PF07728.9	gi|124028122|ref|YP_001013442.1|	-	6.8e-28	97.1	0.0	2.1e-27	95.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.6	gi|124028122|ref|YP_001013442.1|	-	1.7e-08	34.1	0.0	2.9e-08	33.3	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA	PF00004.24	gi|124028122|ref|YP_001013442.1|	-	1.4e-05	25.2	0.0	5e-05	23.4	0.0	2.0	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.16	gi|124028122|ref|YP_001013442.1|	-	2.9e-05	23.3	0.1	0.00057	19.1	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.1	gi|124028122|ref|YP_001013442.1|	-	0.00022	21.2	0.3	0.00081	19.4	0.0	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
Sigma54_activat	PF00158.21	gi|124028122|ref|YP_001013442.1|	-	0.0005	19.5	0.0	0.0013	18.1	0.0	1.7	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_22	PF13401.1	gi|124028122|ref|YP_001013442.1|	-	0.0027	17.8	0.0	0.032	14.3	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
MCM	PF00493.18	gi|124028122|ref|YP_001013442.1|	-	0.008	15.0	0.0	0.015	14.0	0.0	1.4	1	0	0	1	1	1	1	MCM2/3/5	family
MarC	PF01914.12	gi|124028124|ref|YP_001013444.1|	-	8.9e-44	149.0	15.1	1e-43	148.8	10.4	1.0	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
DUF2852	PF11014.3	gi|124028124|ref|YP_001013444.1|	-	0.15	12.0	0.0	0.38	10.7	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2852)
YcaO	PF02624.11	gi|124028125|ref|YP_001013445.1|	-	0.0017	17.9	0.1	0.02	14.3	0.0	1.9	1	1	1	2	2	2	2	YcaO-like	family
Baculo_PEP_C	PF04513.7	gi|124028127|ref|YP_001013447.1|	-	0.00051	19.8	0.0	0.00061	19.6	0.0	1.1	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Allexi_40kDa	PF05549.6	gi|124028127|ref|YP_001013447.1|	-	0.0051	16.1	4.2	0.0061	15.8	2.9	1.0	1	0	0	1	1	1	1	Allexivirus	40kDa	protein
COG5	PF10392.4	gi|124028127|ref|YP_001013447.1|	-	0.015	15.2	2.8	0.018	15.0	1.9	1.3	1	1	0	1	1	1	0	Golgi	transport	complex	subunit	5
DUF4201	PF13870.1	gi|124028127|ref|YP_001013447.1|	-	0.015	14.7	4.1	0.062	12.7	2.8	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
Myosin_tail_1	PF01576.14	gi|124028127|ref|YP_001013447.1|	-	0.017	12.8	1.7	0.018	12.8	1.2	1.1	1	0	0	1	1	1	0	Myosin	tail
DUF3866	PF12982.2	gi|124028127|ref|YP_001013447.1|	-	0.026	13.5	0.3	0.037	12.9	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3866)
GAS	PF13851.1	gi|124028127|ref|YP_001013447.1|	-	0.04	13.1	2.7	0.047	12.8	1.9	1.1	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
RE_HindIII	PF09518.5	gi|124028127|ref|YP_001013447.1|	-	0.044	12.6	0.5	0.047	12.5	0.3	1.2	1	0	0	1	1	1	0	HindIII	restriction	endonuclease
DUF4525	PF15027.1	gi|124028127|ref|YP_001013447.1|	-	0.061	12.8	0.2	0.13	11.7	0.1	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4525)
Lebercilin	PF15619.1	gi|124028127|ref|YP_001013447.1|	-	0.062	12.7	3.8	0.068	12.5	2.6	1.3	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF2730	PF10805.3	gi|124028127|ref|YP_001013447.1|	-	0.063	13.0	1.8	0.15	11.8	1.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
TMF_TATA_bd	PF12325.3	gi|124028127|ref|YP_001013447.1|	-	0.065	12.9	3.6	0.23	11.2	0.4	2.1	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DUF4200	PF13863.1	gi|124028127|ref|YP_001013447.1|	-	0.093	12.6	1.6	1.2	9.0	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
ATG16	PF08614.6	gi|124028127|ref|YP_001013447.1|	-	0.097	12.4	2.5	0.16	11.8	1.5	1.5	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF1664	PF07889.7	gi|124028127|ref|YP_001013447.1|	-	0.11	12.2	1.1	0.17	11.7	0.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF1319	PF07028.6	gi|124028127|ref|YP_001013447.1|	-	0.14	12.3	2.0	0.19	11.9	1.4	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1319)
Prefoldin_2	PF01920.15	gi|124028127|ref|YP_001013447.1|	-	0.15	11.8	1.9	0.95	9.2	0.1	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
Syntaxin	PF00804.20	gi|124028127|ref|YP_001013447.1|	-	0.17	12.0	1.4	0.26	11.4	1.0	1.4	1	1	0	1	1	1	0	Syntaxin
Spc7	PF08317.6	gi|124028127|ref|YP_001013447.1|	-	0.21	10.2	3.1	0.23	10.0	2.2	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
UPF0242	PF06785.6	gi|124028127|ref|YP_001013447.1|	-	0.24	10.0	3.6	0.27	9.8	2.5	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)
CENP-F_leu_zip	PF10473.4	gi|124028127|ref|YP_001013447.1|	-	0.33	10.7	4.3	0.69	9.7	1.8	2.2	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF972	PF06156.8	gi|124028127|ref|YP_001013447.1|	-	0.39	11.0	3.0	2.1	8.7	0.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF948	PF06103.6	gi|124028127|ref|YP_001013447.1|	-	0.44	10.4	3.0	2	8.3	0.9	2.3	2	1	0	2	2	1	0	Bacterial	protein	of	unknown	function	(DUF948)
FlaC_arch	PF05377.6	gi|124028127|ref|YP_001013447.1|	-	0.77	9.7	5.8	0.38	10.6	0.4	2.4	3	0	0	3	3	2	0	Flagella	accessory	protein	C	(FlaC)
HSBP1	PF06825.7	gi|124028127|ref|YP_001013447.1|	-	0.8	9.3	3.1	0.49	9.9	0.6	1.9	2	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
Shugoshin_N	PF07558.6	gi|124028127|ref|YP_001013447.1|	-	0.99	9.1	3.1	0.98	9.1	0.5	2.0	2	0	0	2	2	2	0	Shugoshin	N-terminal	coiled-coil	region
DUF3461	PF11944.3	gi|124028127|ref|YP_001013447.1|	-	2.3	8.0	7.2	0.7	9.7	3.3	1.4	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3461)
NTP_transf_5	PF14907.1	gi|124028128|ref|YP_001013448.1|	-	0.0092	15.3	0.0	0.014	14.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
NTP_transf_2	PF01909.18	gi|124028128|ref|YP_001013448.1|	-	0.011	16.0	0.4	0.044	14.1	0.2	2.2	2	1	0	2	2	2	0	Nucleotidyltransferase	domain
DNA_pol_B	PF00136.16	gi|124028129|ref|YP_001013449.1|	-	1.3e-94	317.6	0.0	1.7e-94	317.2	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|124028129|ref|YP_001013449.1|	-	4.3e-31	107.9	0.0	9.5e-31	106.8	0.0	1.6	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.1	gi|124028129|ref|YP_001013449.1|	-	3.8e-07	30.0	0.0	1.4e-06	28.1	0.0	2.0	1	1	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.4	gi|124028129|ref|YP_001013449.1|	-	8.1e-05	22.2	0.0	0.0002	20.9	0.0	1.6	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DUF2286	PF10051.4	gi|124028130|ref|YP_001013450.1|	-	2.5e-57	192.4	1.7	3.4e-57	192.0	1.2	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2286)
RHH_1	PF01402.16	gi|124028130|ref|YP_001013450.1|	-	0.037	13.9	1.0	5.6	7.0	0.0	2.9	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Chalcone	PF02431.10	gi|124028130|ref|YP_001013450.1|	-	0.041	13.2	0.1	0.4	10.0	0.0	2.1	2	0	0	2	2	2	0	Chalcone-flavanone	isomerase
LAM_C	PF12544.3	gi|124028130|ref|YP_001013450.1|	-	0.31	11.0	1.6	0.49	10.4	1.1	1.2	1	0	0	1	1	1	0	Lysine-2,3-aminomutase
PIN	PF01850.16	gi|124028130|ref|YP_001013450.1|	-	0.34	11.2	3.4	0.72	10.1	0.1	2.3	2	0	0	2	2	2	0	PIN	domain
Methyltransf_18	PF12847.2	gi|124028131|ref|YP_001013451.1|	-	5.4e-09	36.6	0.0	7.2e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124028131|ref|YP_001013451.1|	-	3.5e-08	33.4	0.0	4.5e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124028131|ref|YP_001013451.1|	-	5.5e-08	32.5	0.0	6.1e-08	32.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124028131|ref|YP_001013451.1|	-	1.1e-07	31.5	0.0	1.8e-07	30.9	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
DOT1	PF08123.8	gi|124028131|ref|YP_001013451.1|	-	3.8e-07	29.6	0.0	0.00016	21.0	0.0	2.3	1	1	1	2	2	2	2	Histone	methylation	protein	DOT1
PrmA	PF06325.8	gi|124028131|ref|YP_001013451.1|	-	1.4e-05	24.4	0.1	1.8e-05	24.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.1	gi|124028131|ref|YP_001013451.1|	-	3.6e-05	24.0	0.0	4.7e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124028131|ref|YP_001013451.1|	-	0.00034	21.0	0.0	0.00046	20.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|124028131|ref|YP_001013451.1|	-	0.00062	19.1	0.0	0.00087	18.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_4	PF02390.12	gi|124028131|ref|YP_001013451.1|	-	0.0071	15.4	0.0	0.0097	14.9	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_15	PF09445.5	gi|124028131|ref|YP_001013451.1|	-	0.017	14.7	0.0	0.018	14.5	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
CMAS	PF02353.15	gi|124028131|ref|YP_001013451.1|	-	0.04	12.9	0.0	0.048	12.7	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Penicillinase_R	PF03965.11	gi|124028132|ref|YP_001013452.1|	-	0.045	13.8	0.0	0.059	13.4	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HflK_N	PF12221.3	gi|124028132|ref|YP_001013452.1|	-	0.12	12.1	0.1	0.19	11.4	0.1	1.5	1	0	0	1	1	1	0	Bacterial	membrane	protein	N	terminal
T2SE	PF00437.15	gi|124028133|ref|YP_001013453.1|	-	1.5e-12	46.9	0.0	3.3e-12	45.8	0.0	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
PIN	PF01850.16	gi|124028133|ref|YP_001013453.1|	-	9.1e-08	32.4	0.3	3.1e-07	30.7	0.0	2.1	2	0	0	2	2	1	1	PIN	domain
AAA_17	PF13207.1	gi|124028133|ref|YP_001013453.1|	-	1.3e-05	26.0	0.5	7e-05	23.6	0.1	2.7	2	2	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|124028133|ref|YP_001013453.1|	-	3.6e-05	24.0	0.4	0.00038	20.7	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
AAA_19	PF13245.1	gi|124028133|ref|YP_001013453.1|	-	0.0001	21.9	0.1	0.0098	15.6	0.0	2.5	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|124028133|ref|YP_001013453.1|	-	0.00045	20.2	0.0	0.0012	18.8	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|124028133|ref|YP_001013453.1|	-	0.0011	18.3	0.2	0.008	15.5	0.0	2.4	3	0	0	3	3	2	1	AAA	domain
RuvB_N	PF05496.7	gi|124028133|ref|YP_001013453.1|	-	0.0029	16.6	0.0	0.0066	15.5	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
IstB_IS21	PF01695.12	gi|124028133|ref|YP_001013453.1|	-	0.0033	16.8	0.0	0.0081	15.5	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
FtsK_SpoIIIE	PF01580.13	gi|124028133|ref|YP_001013453.1|	-	0.0034	16.9	0.0	0.016	14.6	0.0	2.0	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA	PF00004.24	gi|124028133|ref|YP_001013453.1|	-	0.0036	17.4	0.2	0.011	15.8	0.0	1.9	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|124028133|ref|YP_001013453.1|	-	0.0037	17.2	0.1	0.0089	16.0	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_22	PF13401.1	gi|124028133|ref|YP_001013453.1|	-	0.0042	17.2	0.0	0.027	14.6	0.0	2.3	3	0	0	3	3	1	1	AAA	domain
AAA_14	PF13173.1	gi|124028133|ref|YP_001013453.1|	-	0.0044	16.9	0.0	0.011	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|124028133|ref|YP_001013453.1|	-	0.0046	15.8	0.2	0.013	14.3	0.0	1.8	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
NACHT	PF05729.7	gi|124028133|ref|YP_001013453.1|	-	0.0092	15.6	0.1	0.017	14.8	0.1	1.4	1	0	0	1	1	1	1	NACHT	domain
NTPase_1	PF03266.10	gi|124028133|ref|YP_001013453.1|	-	0.01	15.5	0.0	0.044	13.4	0.0	2.1	2	0	0	2	2	1	0	NTPase
ArgK	PF03308.11	gi|124028133|ref|YP_001013453.1|	-	0.012	14.4	0.0	0.022	13.5	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
SRP54	PF00448.17	gi|124028133|ref|YP_001013453.1|	-	0.012	15.0	0.0	0.024	14.0	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
KTI12	PF08433.5	gi|124028133|ref|YP_001013453.1|	-	0.017	14.3	0.0	0.036	13.2	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_33	PF13671.1	gi|124028133|ref|YP_001013453.1|	-	0.022	14.6	0.0	0.059	13.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|124028133|ref|YP_001013453.1|	-	0.025	13.6	0.1	0.052	12.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Thymidylate_kin	PF02223.12	gi|124028133|ref|YP_001013453.1|	-	0.034	13.5	0.0	0.12	11.7	0.0	2.0	1	1	1	2	2	2	0	Thymidylate	kinase
ATP_bind_1	PF03029.12	gi|124028133|ref|YP_001013453.1|	-	0.042	13.3	0.1	0.077	12.5	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
CbiA	PF01656.18	gi|124028133|ref|YP_001013453.1|	-	0.043	13.2	0.0	0.43	9.9	0.0	2.3	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_30	PF13604.1	gi|124028133|ref|YP_001013453.1|	-	0.051	13.1	0.1	0.1	12.2	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|124028133|ref|YP_001013453.1|	-	0.057	13.1	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.8	gi|124028133|ref|YP_001013453.1|	-	0.062	12.2	0.0	0.11	11.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_10	PF12846.2	gi|124028133|ref|YP_001013453.1|	-	0.065	12.6	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
UPF0079	PF02367.12	gi|124028133|ref|YP_001013453.1|	-	0.067	12.8	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
RNA_helicase	PF00910.17	gi|124028133|ref|YP_001013453.1|	-	0.068	13.3	0.0	0.13	12.4	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
ABC_tran	PF00005.22	gi|124028133|ref|YP_001013453.1|	-	0.095	12.9	0.0	0.24	11.7	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
PIN_4	PF13638.1	gi|124028133|ref|YP_001013453.1|	-	0.11	12.5	0.0	0.79	9.8	0.0	2.4	1	1	0	1	1	1	0	PIN	domain
Hjc	PF01870.13	gi|124028134|ref|YP_001013454.1|	-	4.9e-27	93.3	0.3	2.2e-26	91.2	0.1	1.8	2	0	0	2	2	2	1	Archaeal	holliday	junction	resolvase	(hjc)
NERD	PF08378.6	gi|124028134|ref|YP_001013454.1|	-	0.001	19.3	0.0	0.002	18.3	0.0	1.4	1	1	0	1	1	1	1	Nuclease-related	domain
DUF3344	PF11824.3	gi|124028135|ref|YP_001013455.1|	-	0.0039	16.5	0.0	0.0058	16.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3344)
CARDB	PF07705.6	gi|124028135|ref|YP_001013455.1|	-	0.094	12.7	0.0	0.23	11.5	0.0	1.6	1	0	0	1	1	1	0	CARDB
ResIII	PF04851.10	gi|124028136|ref|YP_001013456.1|	-	1.5e-22	80.2	0.0	1.3e-21	77.2	0.0	2.2	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|124028136|ref|YP_001013456.1|	-	5e-15	55.1	0.5	2.4e-14	52.9	0.0	2.4	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|124028136|ref|YP_001013456.1|	-	2.5e-11	43.3	0.0	9.4e-11	41.4	0.0	2.0	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.18	gi|124028136|ref|YP_001013456.1|	-	1.6e-10	40.2	0.0	5e-10	38.6	0.0	1.7	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
AAA_22	PF13401.1	gi|124028136|ref|YP_001013456.1|	-	7.1e-05	22.9	0.0	0.00046	20.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|124028136|ref|YP_001013456.1|	-	0.029	14.1	0.3	0.17	11.6	0.0	2.4	2	0	0	2	2	2	0	Part	of	AAA	domain
T2SE	PF00437.15	gi|124028136|ref|YP_001013456.1|	-	0.03	13.2	0.1	0.38	9.6	0.0	2.2	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
DUF2075	PF09848.4	gi|124028136|ref|YP_001013456.1|	-	0.035	13.0	0.0	0.14	11.1	0.0	1.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_10	PF12846.2	gi|124028136|ref|YP_001013456.1|	-	0.043	13.2	0.0	0.11	11.9	0.0	1.7	1	0	0	1	1	1	0	AAA-like	domain
ParA	PF10609.4	gi|124028139|ref|YP_001013459.1|	-	2.4e-28	97.8	0.0	6.5e-28	96.4	0.0	1.7	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|124028139|ref|YP_001013459.1|	-	6.2e-18	64.9	0.0	9.8e-18	64.2	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.13	gi|124028139|ref|YP_001013459.1|	-	4.7e-07	29.2	0.1	0.00023	20.4	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.10	gi|124028139|ref|YP_001013459.1|	-	1.5e-06	27.4	0.9	2.9e-05	23.2	0.4	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_31	PF13614.1	gi|124028139|ref|YP_001013459.1|	-	3.5e-06	27.0	0.0	2.2e-05	24.4	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|124028139|ref|YP_001013459.1|	-	0.00014	21.0	0.0	0.00045	19.3	0.0	1.7	2	0	0	2	2	2	1	ATPase	MipZ
YhjQ	PF06564.7	gi|124028139|ref|YP_001013459.1|	-	0.00038	19.9	0.2	0.0045	16.3	0.1	2.1	2	0	0	2	2	2	1	YhjQ	protein
AAA_25	PF13481.1	gi|124028139|ref|YP_001013459.1|	-	0.0011	18.4	0.0	0.0029	17.0	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_26	PF13500.1	gi|124028139|ref|YP_001013459.1|	-	0.01	15.4	0.7	2.9	7.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|124028139|ref|YP_001013459.1|	-	0.018	14.2	0.1	0.027	13.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ArgK	PF03308.11	gi|124028139|ref|YP_001013459.1|	-	0.027	13.2	0.1	0.049	12.4	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
PhoH	PF02562.11	gi|124028139|ref|YP_001013459.1|	-	0.069	12.3	0.1	0.13	11.4	0.1	1.4	1	0	0	1	1	1	0	PhoH-like	protein
IstB_IS21	PF01695.12	gi|124028139|ref|YP_001013459.1|	-	0.11	11.8	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|124028139|ref|YP_001013459.1|	-	0.13	11.7	0.6	0.16	11.4	0.4	1.4	1	1	0	1	1	1	0	AAA-like	domain
VirC1	PF07015.6	gi|124028139|ref|YP_001013459.1|	-	0.17	10.9	0.0	0.29	10.1	0.0	1.3	1	0	0	1	1	1	0	VirC1	protein
Antitoxin-MazE	PF04014.13	gi|124028140|ref|YP_001013460.1|	-	0.00037	20.1	0.6	0.00061	19.4	0.4	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
ACT_4	PF13291.1	gi|124028140|ref|YP_001013460.1|	-	0.0022	18.2	0.0	0.0037	17.5	0.0	1.3	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|124028140|ref|YP_001013460.1|	-	0.0027	17.1	0.1	0.0078	15.6	0.1	1.9	1	1	0	1	1	1	1	ACT	domain
MraZ	PF02381.13	gi|124028140|ref|YP_001013460.1|	-	0.021	14.5	0.0	0.043	13.5	0.0	1.5	1	0	0	1	1	1	0	MraZ	protein
PCNA_N	PF00705.13	gi|124028141|ref|YP_001013461.1|	-	1.2e-09	37.6	0.2	4.6e-09	35.8	0.0	1.8	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|124028141|ref|YP_001013461.1|	-	9.2e-07	28.8	0.3	2e-05	24.4	0.0	2.6	2	2	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.8	gi|124028141|ref|YP_001013461.1|	-	0.0039	16.3	0.1	0.0064	15.6	0.1	1.4	1	1	0	1	1	1	1	Rad9
Hus1	PF04005.7	gi|124028141|ref|YP_001013461.1|	-	0.014	14.3	0.1	0.024	13.6	0.1	1.4	1	1	0	1	1	1	0	Hus1-like	protein
Ribonuc_2-5A	PF06479.7	gi|124028142|ref|YP_001013462.1|	-	0.032	14.0	0.4	0.046	13.5	0.3	1.2	1	0	0	1	1	1	0	Ribonuclease	2-5A
Avl9	PF09794.4	gi|124028142|ref|YP_001013462.1|	-	0.11	10.9	0.2	0.14	10.5	0.2	1.1	1	0	0	1	1	1	0	Transport	protein	Avl9
RNA_pol_Rpo13	PF12136.3	gi|124028143|ref|YP_001013463.1|	-	5.8e-17	61.1	7.4	5.8e-17	61.1	5.1	2.2	1	1	0	2	2	2	1	RNA	polymerase	Rpo13	subunit	HTH	domain
DUF2089	PF09862.4	gi|124028143|ref|YP_001013463.1|	-	0.064	13.0	0.6	0.14	11.9	0.1	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2089)
Tim44	PF04280.10	gi|124028143|ref|YP_001013463.1|	-	0.13	12.2	0.7	0.14	12.1	0.5	1.1	1	0	0	1	1	1	0	Tim44-like	domain
AAA_10	PF12846.2	gi|124028144|ref|YP_001013464.1|	-	6.6e-32	111.1	0.1	9.6e-32	110.6	0.0	1.1	1	0	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|124028144|ref|YP_001013464.1|	-	1.9e-19	70.4	0.0	3.2e-19	69.6	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
Zot	PF05707.7	gi|124028144|ref|YP_001013464.1|	-	4.6e-08	32.7	0.1	7.2e-06	25.5	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
TrwB_AAD_bind	PF10412.4	gi|124028144|ref|YP_001013464.1|	-	4.3e-07	28.8	0.0	5.3e-05	22.0	0.0	2.1	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_19	PF13245.1	gi|124028144|ref|YP_001013464.1|	-	1.1e-05	25.1	0.0	5.3e-05	22.8	0.0	2.2	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|124028144|ref|YP_001013464.1|	-	1.5e-05	25.1	0.2	0.027	14.6	0.1	2.6	1	1	0	1	1	1	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|124028144|ref|YP_001013464.1|	-	1.6e-05	24.4	0.0	4e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
ArgK	PF03308.11	gi|124028144|ref|YP_001013464.1|	-	6.6e-05	21.8	0.0	0.00014	20.7	0.0	1.4	1	0	0	1	1	1	1	ArgK	protein
T2SE	PF00437.15	gi|124028144|ref|YP_001013464.1|	-	0.0001	21.3	0.0	0.00017	20.5	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF853	PF05872.7	gi|124028144|ref|YP_001013464.1|	-	0.00013	20.4	0.1	0.017	13.4	0.0	2.2	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
KaiC	PF06745.8	gi|124028144|ref|YP_001013464.1|	-	0.00018	20.7	0.0	0.16	11.0	0.0	2.2	2	0	0	2	2	2	2	KaiC
DEAD	PF00270.24	gi|124028144|ref|YP_001013464.1|	-	0.00043	19.8	0.1	0.1	12.0	0.0	2.4	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
MobB	PF03205.9	gi|124028144|ref|YP_001013464.1|	-	0.00079	19.1	0.1	0.0015	18.2	0.1	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ResIII	PF04851.10	gi|124028144|ref|YP_001013464.1|	-	0.0024	17.7	0.0	0.33	10.7	0.0	2.2	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_17	PF13207.1	gi|124028144|ref|YP_001013464.1|	-	0.0026	18.5	0.0	0.0081	16.9	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|124028144|ref|YP_001013464.1|	-	0.0038	16.8	0.0	0.39	10.2	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124028144|ref|YP_001013464.1|	-	0.0046	16.9	0.5	0.043	13.8	0.0	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.7	gi|124028144|ref|YP_001013464.1|	-	0.0076	15.9	0.0	0.019	14.6	0.0	1.6	1	0	0	1	1	1	1	NACHT	domain
DUF2075	PF09848.4	gi|124028144|ref|YP_001013464.1|	-	0.0086	15.0	0.0	0.13	11.2	0.0	2.0	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
cobW	PF02492.14	gi|124028144|ref|YP_001013464.1|	-	0.0097	15.3	0.1	0.017	14.5	0.0	1.3	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.24	gi|124028144|ref|YP_001013464.1|	-	0.011	15.9	0.0	4.9	7.3	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|124028144|ref|YP_001013464.1|	-	0.023	13.8	0.0	0.043	12.9	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
ATP_bind_1	PF03029.12	gi|124028144|ref|YP_001013464.1|	-	0.023	14.2	0.0	0.042	13.3	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_25	PF13481.1	gi|124028144|ref|YP_001013464.1|	-	0.054	12.8	1.6	0.63	9.4	0.4	2.8	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|124028144|ref|YP_001013464.1|	-	0.085	13.1	1.9	0.32	11.2	1.0	2.1	1	1	1	2	2	2	0	AAA	domain
T4SS-DNA_transf	PF02534.9	gi|124028144|ref|YP_001013464.1|	-	0.11	11.0	0.1	0.52	8.8	0.0	1.8	2	0	0	2	2	2	0	Type	IV	secretory	system	Conjugative	DNA	transfer
AAA_33	PF13671.1	gi|124028144|ref|YP_001013464.1|	-	0.11	12.3	0.0	0.42	10.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|124028144|ref|YP_001013464.1|	-	0.15	11.5	0.0	0.24	10.7	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Viral_helicase1	PF01443.13	gi|124028144|ref|YP_001013464.1|	-	0.16	11.4	0.0	0.49	9.8	0.0	1.8	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_29	PF13555.1	gi|124028144|ref|YP_001013464.1|	-	0.18	11.3	0.0	0.43	10.1	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.17	gi|124028144|ref|YP_001013464.1|	-	0.25	10.1	0.0	0.4	9.4	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
DEAD_assoc	PF08494.6	gi|124028145|ref|YP_001013465.1|	-	9.4e-33	113.5	0.0	2.3e-32	112.2	0.0	1.7	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|124028145|ref|YP_001013465.1|	-	1.5e-31	109.1	0.0	4.7e-31	107.5	0.0	1.8	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|124028145|ref|YP_001013465.1|	-	6e-16	58.0	0.1	5.8e-15	54.9	0.1	2.5	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|124028145|ref|YP_001013465.1|	-	4e-06	26.7	0.0	2.4e-05	24.2	0.0	2.0	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SecA_DEAD	PF07517.9	gi|124028145|ref|YP_001013465.1|	-	0.0057	15.9	0.0	0.0083	15.4	0.0	1.3	1	0	0	1	1	1	1	SecA	DEAD-like	domain
HypA	PF01155.14	gi|124028145|ref|YP_001013465.1|	-	0.0068	16.0	0.3	0.016	14.8	0.2	1.7	1	1	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
T4SS-DNA_transf	PF02534.9	gi|124028145|ref|YP_001013465.1|	-	0.052	12.1	0.0	0.23	10.0	0.0	1.8	2	0	0	2	2	2	0	Type	IV	secretory	system	Conjugative	DNA	transfer
UPF0515	PF15135.1	gi|124028145|ref|YP_001013465.1|	-	0.094	11.7	0.1	0.14	11.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
Zn-ribbon_8	PF09723.5	gi|124028145|ref|YP_001013465.1|	-	0.11	12.5	0.2	0.22	11.5	0.1	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|124028145|ref|YP_001013465.1|	-	0.14	11.7	0.6	6.8	6.4	0.0	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
UPF0547	PF10571.4	gi|124028145|ref|YP_001013465.1|	-	0.26	11.0	0.2	18	5.1	0.0	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
PhnA_Zn_Ribbon	PF08274.7	gi|124028145|ref|YP_001013465.1|	-	0.5	10.2	1.2	1.4	8.7	0.1	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
AAA_10	PF12846.2	gi|124028147|ref|YP_001013467.1|	-	7.5e-20	71.5	0.0	1.8e-10	40.7	0.0	2.2	1	1	1	2	2	2	2	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|124028147|ref|YP_001013467.1|	-	4.8e-07	28.7	0.0	0.0017	17.0	0.0	2.1	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.1	gi|124028147|ref|YP_001013467.1|	-	3.8e-06	27.0	0.1	1.3e-05	25.3	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|124028147|ref|YP_001013467.1|	-	8.2e-06	25.4	0.0	2.3e-05	23.9	0.0	1.6	1	1	0	1	1	1	1	FtsK/SpoIIIE	family
DUF87	PF01935.12	gi|124028147|ref|YP_001013467.1|	-	2.4e-05	24.2	0.0	4.5e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|124028147|ref|YP_001013467.1|	-	0.00014	20.3	0.0	0.0037	15.6	0.0	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
AAA_19	PF13245.1	gi|124028147|ref|YP_001013467.1|	-	0.00016	21.3	0.4	0.00039	20.0	0.1	1.8	2	0	0	2	2	2	1	Part	of	AAA	domain
TraG-D_C	PF12696.2	gi|124028147|ref|YP_001013467.1|	-	0.003	17.4	0.0	0.0058	16.4	0.0	1.4	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_30	PF13604.1	gi|124028147|ref|YP_001013467.1|	-	0.0045	16.5	0.0	0.008	15.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
T4SS-DNA_transf	PF02534.9	gi|124028147|ref|YP_001013467.1|	-	0.01	14.4	0.1	0.023	13.2	0.0	1.5	2	0	0	2	2	2	0	Type	IV	secretory	system	Conjugative	DNA	transfer
Helicase_RecD	PF05127.9	gi|124028147|ref|YP_001013467.1|	-	0.014	15.0	0.0	0.033	13.8	0.0	1.6	1	1	0	1	1	1	0	Helicase
CBS	PF00571.23	gi|124028147|ref|YP_001013467.1|	-	0.031	14.0	0.4	7.5	6.4	0.1	2.5	2	0	0	2	2	2	0	CBS	domain
NACHT	PF05729.7	gi|124028147|ref|YP_001013467.1|	-	0.051	13.2	0.0	0.16	11.5	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
ResIII	PF04851.10	gi|124028147|ref|YP_001013467.1|	-	0.06	13.1	0.0	0.39	10.5	0.0	2.0	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_16	PF13191.1	gi|124028147|ref|YP_001013467.1|	-	0.071	13.0	2.2	1.4	8.8	1.5	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|124028147|ref|YP_001013467.1|	-	0.14	11.8	0.0	0.35	10.5	0.0	1.7	1	1	0	1	1	1	0	Archaeal	ATPase
Ribosomal_L2_C	PF03947.13	gi|124028148|ref|YP_001013468.1|	-	4.5e-42	142.9	0.3	6.3e-42	142.4	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|124028148|ref|YP_001013468.1|	-	1.2e-10	41.1	0.0	2.9e-10	39.9	0.0	1.7	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
RsgI_N	PF12791.2	gi|124028148|ref|YP_001013468.1|	-	0.075	12.7	0.1	1.7	8.3	0.0	2.3	2	0	0	2	2	2	0	Anti-sigma	factor	N-terminus
Ribosomal_S19	PF00203.16	gi|124028149|ref|YP_001013469.1|	-	1.6e-31	107.7	0.2	2.2e-31	107.2	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
Methyltransf_11	PF08241.7	gi|124028150|ref|YP_001013470.1|	-	3.2e-15	56.3	0.0	5.8e-15	55.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124028150|ref|YP_001013470.1|	-	2.1e-10	40.3	0.3	3e-10	39.8	0.2	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028150|ref|YP_001013470.1|	-	3.7e-09	36.8	0.0	5.7e-09	36.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124028150|ref|YP_001013470.1|	-	1.2e-08	35.3	0.0	1.8e-08	34.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|124028150|ref|YP_001013470.1|	-	2.2e-07	30.2	0.0	2.7e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.2	gi|124028150|ref|YP_001013470.1|	-	6.7e-05	23.4	0.0	9.2e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124028150|ref|YP_001013470.1|	-	0.00022	20.8	0.0	0.00031	20.3	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|124028150|ref|YP_001013470.1|	-	0.0039	17.2	0.0	0.0056	16.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
AAA_5	PF07728.9	gi|124028152|ref|YP_001013472.1|	-	2.6e-18	66.1	0.0	4.5e-18	65.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|124028152|ref|YP_001013472.1|	-	2.5e-05	24.4	0.0	8e-05	22.8	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|124028152|ref|YP_001013472.1|	-	6.6e-05	22.5	0.0	0.00018	21.1	0.0	1.7	2	0	0	2	2	1	1	Part	of	AAA	domain
Sigma54_activat	PF00158.21	gi|124028152|ref|YP_001013472.1|	-	0.00015	21.2	0.0	0.12	11.8	0.0	2.2	2	0	0	2	2	2	2	Sigma-54	interaction	domain
TIP49	PF06068.8	gi|124028152|ref|YP_001013472.1|	-	0.00022	20.1	0.0	0.00076	18.3	0.0	1.8	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_3	PF07726.6	gi|124028152|ref|YP_001013472.1|	-	0.00038	20.0	0.0	0.0026	17.3	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.1	gi|124028152|ref|YP_001013472.1|	-	0.0015	18.6	0.0	0.01	15.8	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|124028152|ref|YP_001013472.1|	-	0.0032	17.7	0.0	0.0073	16.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|124028152|ref|YP_001013472.1|	-	0.0045	16.1	0.1	0.03	13.4	0.0	2.3	3	0	0	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.1	gi|124028152|ref|YP_001013472.1|	-	0.0054	16.7	0.0	0.011	15.6	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124028152|ref|YP_001013472.1|	-	0.0088	16.1	0.0	0.077	13.1	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124028152|ref|YP_001013472.1|	-	0.011	16.5	1.0	0.029	15.2	0.2	2.2	2	1	0	2	2	1	0	AAA	domain
NACHT	PF05729.7	gi|124028152|ref|YP_001013472.1|	-	0.014	15.0	0.1	0.045	13.3	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
IstB_IS21	PF01695.12	gi|124028152|ref|YP_001013472.1|	-	0.016	14.6	0.1	0.049	13.0	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_30	PF13604.1	gi|124028152|ref|YP_001013472.1|	-	0.022	14.3	0.0	0.041	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_2	PF07724.9	gi|124028152|ref|YP_001013472.1|	-	0.036	13.9	0.0	0.088	12.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
AAA_11	PF13086.1	gi|124028152|ref|YP_001013472.1|	-	0.1	12.1	0.0	0.13	11.7	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|124028152|ref|YP_001013472.1|	-	0.12	12.2	0.0	0.22	11.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Parvo_NS1	PF01057.12	gi|124028152|ref|YP_001013472.1|	-	0.17	10.7	0.0	0.27	10.0	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
VWA_CoxE	PF05762.9	gi|124028153|ref|YP_001013473.1|	-	4e-20	71.9	6.9	4.4e-20	71.7	2.4	2.6	3	0	0	3	3	3	1	VWA	domain	containing	CoxE-like	protein
VWA_2	PF13519.1	gi|124028153|ref|YP_001013473.1|	-	0.017	15.2	1.7	0.08	13.0	0.0	2.9	3	2	0	3	3	3	0	von	Willebrand	factor	type	A	domain
RuvA_C	PF07499.8	gi|124028154|ref|YP_001013474.1|	-	0.012	15.7	0.7	2.3	8.4	0.0	2.3	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
DUF4265	PF14085.1	gi|124028154|ref|YP_001013474.1|	-	0.017	14.8	0.1	0.021	14.5	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4265)
RraB	PF06877.6	gi|124028154|ref|YP_001013474.1|	-	0.061	13.9	0.0	0.087	13.4	0.0	1.3	1	1	0	1	1	1	0	Regulator	of	ribonuclease	activity	B
CxxCxxCC	PF03692.10	gi|124028155|ref|YP_001013475.1|	-	7e-09	36.0	0.3	2.7e-08	34.1	0.2	2.0	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
Methyltrn_RNA_3	PF02598.12	gi|124028156|ref|YP_001013476.1|	-	2.6e-44	151.7	0.0	3.4e-44	151.3	0.0	1.1	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
Ribosomal_L3	PF00297.17	gi|124028157|ref|YP_001013477.1|	-	1.6e-61	208.0	0.0	1.8e-61	207.8	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.17	gi|124028158|ref|YP_001013478.1|	-	1.1e-38	132.5	0.4	1.5e-38	132.1	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Arch_ATPase	PF01637.13	gi|124028158|ref|YP_001013478.1|	-	0.039	13.6	0.0	0.053	13.2	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
Cm_res_leader	PF08077.6	gi|124028158|ref|YP_001013478.1|	-	0.14	11.8	1.1	0.59	9.9	0.7	2.0	1	0	0	1	1	1	0	Chloramphenicol	resistance	gene	leader	peptide
Ribosomal_L23	PF00276.15	gi|124028159|ref|YP_001013479.1|	-	8.1e-22	76.9	0.9	1.1e-21	76.5	0.6	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L23
TusA	PF01206.12	gi|124028159|ref|YP_001013479.1|	-	0.0042	16.6	0.2	0.0061	16.1	0.2	1.3	1	1	0	1	1	1	1	Sulfurtransferase	TusA
7TMR-HDED	PF07697.6	gi|124028159|ref|YP_001013479.1|	-	0.057	13.1	0.5	0.067	12.9	0.4	1.1	1	0	0	1	1	1	0	7TM-HD	extracellular
RRM_6	PF14259.1	gi|124028159|ref|YP_001013479.1|	-	0.13	12.2	0.0	0.23	11.4	0.0	1.4	2	0	0	2	2	2	0	RNA	recognition	motif	(a.k.a.	RRM,	RBD,	or	RNP	domain)
Ribosomal_L22	PF00237.14	gi|124028160|ref|YP_001013480.1|	-	6.4e-37	125.6	0.2	7.7e-37	125.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
RelB_N	PF12910.2	gi|124028160|ref|YP_001013480.1|	-	0.015	14.6	0.0	0.11	11.8	0.0	2.1	2	0	0	2	2	2	0	Antitoxin	of	toxin-antitoxin	stability	system	N-terminal
Ribosomal_S3_C	PF00189.15	gi|124028161|ref|YP_001013481.1|	-	2.9e-16	59.4	2.5	3.9e-16	59.0	0.3	2.1	2	0	0	2	2	2	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.12	gi|124028161|ref|YP_001013481.1|	-	1.4e-11	43.7	0.1	4.1e-11	42.2	0.0	1.9	2	0	0	2	2	2	1	KH	domain
SPOB_a	PF14689.1	gi|124028161|ref|YP_001013481.1|	-	0.059	12.9	0.1	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
KH_3	PF13014.1	gi|124028161|ref|YP_001013481.1|	-	0.1	12.2	0.1	0.29	10.8	0.1	1.8	1	0	0	1	1	1	0	KH	domain
Cas_Csa5	PF09702.5	gi|124028161|ref|YP_001013481.1|	-	0.13	12.3	1.0	0.37	10.9	0.7	2.0	1	1	0	1	1	1	0	CRISPR-associated	protein	(Cas_Csa5)
KH_1	PF00013.24	gi|124028161|ref|YP_001013481.1|	-	0.19	11.3	0.1	0.19	11.3	0.1	2.3	3	0	0	3	3	3	0	KH	domain
Ribosomal_L29	PF00831.18	gi|124028162|ref|YP_001013482.1|	-	1.2e-23	82.4	3.9	1.3e-23	82.4	2.4	1.2	1	1	0	1	1	1	1	Ribosomal	L29	protein
Rep_1	PF01446.12	gi|124028162|ref|YP_001013482.1|	-	0.0036	16.6	0.2	0.0036	16.6	0.1	1.1	1	0	0	1	1	1	1	Replication	protein
DUF501	PF04417.7	gi|124028162|ref|YP_001013482.1|	-	0.11	12.3	0.1	0.15	11.9	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF501)
DUF760	PF05542.6	gi|124028162|ref|YP_001013482.1|	-	0.12	12.5	0.1	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF760)
DUF2299	PF10061.4	gi|124028162|ref|YP_001013482.1|	-	0.13	11.7	0.1	0.14	11.6	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2299)
Med9	PF07544.8	gi|124028162|ref|YP_001013482.1|	-	0.34	10.6	2.7	0.96	9.2	0.6	2.0	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
UPF0086	PF01868.11	gi|124028163|ref|YP_001013483.1|	-	6.1e-25	86.6	0.1	7.1e-25	86.4	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_S17	PF00366.15	gi|124028164|ref|YP_001013484.1|	-	7.4e-26	89.9	1.2	9.8e-26	89.5	0.8	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_L14	PF00238.14	gi|124028165|ref|YP_001013485.1|	-	4.1e-40	136.3	0.1	4.6e-40	136.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
FeoA	PF04023.9	gi|124028165|ref|YP_001013485.1|	-	0.071	13.0	1.7	6.3	6.8	0.0	2.2	1	1	1	2	2	2	0	FeoA	domain
KOW	PF00467.24	gi|124028166|ref|YP_001013486.1|	-	8.7e-07	28.4	4.6	1.9e-06	27.3	3.2	1.5	1	0	0	1	1	1	1	KOW	motif
Ribosomal_S4e	PF00900.15	gi|124028167|ref|YP_001013487.1|	-	2.4e-29	100.8	0.0	4.2e-29	100.0	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.7	gi|124028167|ref|YP_001013487.1|	-	3.7e-18	65.0	2.2	6.6e-18	64.2	1.5	1.5	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.20	gi|124028167|ref|YP_001013487.1|	-	3.3e-13	48.8	0.1	6.6e-13	47.8	0.0	1.6	1	0	0	1	1	1	1	S4	domain
KOW	PF00467.24	gi|124028167|ref|YP_001013487.1|	-	0.0049	16.5	1.9	0.014	15.1	1.3	1.8	1	0	0	1	1	1	1	KOW	motif
HAS-barrel	PF09378.5	gi|124028167|ref|YP_001013487.1|	-	0.092	12.6	0.1	0.26	11.1	0.1	1.9	1	0	0	1	1	1	0	HAS	barrel	domain
Ribosomal_L5_C	PF00673.16	gi|124028168|ref|YP_001013488.1|	-	1.3e-25	88.9	0.0	2.6e-25	88.0	0.0	1.5	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|124028168|ref|YP_001013488.1|	-	7.6e-22	76.8	0.6	1.4e-21	76.0	0.4	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.16	gi|124028169|ref|YP_001013489.1|	-	1.1e-17	63.1	4.3	1.2e-17	62.9	3.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-FPG_IleRS	PF06827.9	gi|124028169|ref|YP_001013489.1|	-	0.00067	19.2	2.8	0.002	17.7	0.9	2.0	1	1	1	2	2	2	2	Zinc	finger	found	in	FPG	and	IleRS
Ribosomal_L37ae	PF01780.14	gi|124028169|ref|YP_001013489.1|	-	0.011	15.5	0.3	0.013	15.3	0.2	1.1	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
zf-UBR	PF02207.15	gi|124028169|ref|YP_001013489.1|	-	0.025	14.3	0.1	0.031	13.9	0.1	1.1	1	0	0	1	1	1	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
A2L_zn_ribbon	PF08792.5	gi|124028169|ref|YP_001013489.1|	-	0.034	13.6	1.1	0.047	13.1	0.7	1.2	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.1	gi|124028169|ref|YP_001013489.1|	-	0.046	13.2	0.2	0.048	13.1	0.1	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
DUF1451	PF07295.6	gi|124028169|ref|YP_001013489.1|	-	0.05	13.3	0.1	0.054	13.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
zf-CCHC_3	PF13917.1	gi|124028169|ref|YP_001013489.1|	-	0.59	9.9	2.9	0.67	9.7	0.1	2.1	2	0	0	2	2	2	0	Zinc	knuckle
zf-HIT	PF04438.11	gi|124028169|ref|YP_001013489.1|	-	2.8	7.6	5.9	9.4	5.9	4.1	2.0	1	1	0	1	1	1	0	HIT	zinc	finger
zf-IS66	PF13005.2	gi|124028169|ref|YP_001013489.1|	-	4.3	7.3	7.1	0.38	10.7	1.3	1.8	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Ribosomal_S8	PF00410.14	gi|124028170|ref|YP_001013490.1|	-	1.8e-28	98.9	0.0	2.4e-28	98.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L6	PF00347.18	gi|124028171|ref|YP_001013491.1|	-	3.3e-32	110.8	10.3	3.4e-17	62.6	0.8	2.2	2	0	0	2	2	2	2	Ribosomal	protein	L6
Toprim_2	PF13155.1	gi|124028171|ref|YP_001013491.1|	-	0.097	13.0	0.0	0.44	10.8	0.0	1.9	2	0	0	2	2	2	0	Toprim-like
YbbR	PF07949.7	gi|124028171|ref|YP_001013491.1|	-	0.23	11.5	6.6	2.9	8.0	0.2	2.9	1	1	1	2	2	2	0	YbbR-like	protein
Ribosomal_L32e	PF01655.13	gi|124028172|ref|YP_001013492.1|	-	3.5e-34	117.1	0.0	4.9e-34	116.6	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L32
Ribosomal_L19e	PF01280.15	gi|124028173|ref|YP_001013493.1|	-	3.1e-59	198.9	3.6	3.5e-59	198.8	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Ish1	PF10281.4	gi|124028173|ref|YP_001013493.1|	-	0.063	13.3	0.1	1.3	9.1	0.0	2.7	3	0	0	3	3	3	0	Putative	stress-responsive	nuclear	envelope	protein
DUF1509	PF07420.6	gi|124028173|ref|YP_001013493.1|	-	0.11	11.6	4.0	0.13	11.5	2.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1509)
HTH_24	PF13412.1	gi|124028173|ref|YP_001013493.1|	-	0.57	9.6	2.6	6.5	6.2	0.2	2.5	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Ribosomal_L18p	PF00861.17	gi|124028174|ref|YP_001013494.1|	-	1.8e-39	134.6	0.1	2.3e-39	134.2	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	L18p/L5e	family
Ribosomal_L18_c	PF14204.1	gi|124028174|ref|YP_001013494.1|	-	1.1e-12	48.3	0.7	1.9e-12	47.5	0.5	1.3	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
VASP_tetra	PF08776.6	gi|124028174|ref|YP_001013494.1|	-	0.022	14.0	0.9	0.045	13.0	0.6	1.5	1	0	0	1	1	1	0	VASP	tetramerisation	domain
Ribosomal_S5_C	PF03719.10	gi|124028175|ref|YP_001013495.1|	-	1.1e-26	91.8	0.0	2e-26	91.0	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.15	gi|124028175|ref|YP_001013495.1|	-	8.3e-24	83.1	3.7	8.3e-24	83.1	2.5	1.6	2	0	0	2	2	2	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L30	PF00327.15	gi|124028176|ref|YP_001013496.1|	-	4.7e-15	54.9	0.2	9.4e-15	53.9	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L18e	PF00828.14	gi|124028177|ref|YP_001013497.1|	-	9.7e-37	126.2	0.6	1.2e-36	125.9	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
Ribosomal_L12	PF00542.14	gi|124028177|ref|YP_001013497.1|	-	0.075	13.0	1.0	8.1	6.5	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	protein	L7/L12	C-terminal	domain
SecY	PF00344.15	gi|124028178|ref|YP_001013498.1|	-	1.5e-79	267.4	18.2	2.1e-79	266.9	12.6	1.2	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.4	gi|124028178|ref|YP_001013498.1|	-	2e-07	30.4	1.4	7.4e-07	28.5	1.0	2.1	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
AAA_18	PF13238.1	gi|124028179|ref|YP_001013499.1|	-	3.4e-13	50.0	0.0	4.7e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124028179|ref|YP_001013499.1|	-	7.7e-08	33.1	0.0	1e-07	32.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|124028179|ref|YP_001013499.1|	-	3.2e-06	26.9	1.3	5.8e-06	26.1	0.4	1.7	2	0	0	2	2	2	1	NTPase
SRP54	PF00448.17	gi|124028179|ref|YP_001013499.1|	-	5.7e-06	25.9	0.0	1.1e-05	24.9	0.0	1.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.1	gi|124028179|ref|YP_001013499.1|	-	9.9e-06	25.4	0.4	3.4e-05	23.7	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.12	gi|124028179|ref|YP_001013499.1|	-	1.4e-05	24.5	0.0	0.062	12.6	0.0	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
AAA	PF00004.24	gi|124028179|ref|YP_001013499.1|	-	2.3e-05	24.5	0.0	0.00016	21.8	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|124028179|ref|YP_001013499.1|	-	2.9e-05	24.0	0.1	5.4e-05	23.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|124028179|ref|YP_001013499.1|	-	0.00012	20.9	0.3	0.00025	19.9	0.2	1.4	1	0	0	1	1	1	1	ArgK	protein
AAA_16	PF13191.1	gi|124028179|ref|YP_001013499.1|	-	0.00016	21.7	0.1	0.00024	21.1	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|124028179|ref|YP_001013499.1|	-	0.00042	19.9	0.1	0.00042	19.9	0.0	3.1	4	0	0	4	4	4	1	Part	of	AAA	domain
KTI12	PF08433.5	gi|124028179|ref|YP_001013499.1|	-	0.00047	19.4	0.0	0.00083	18.6	0.0	1.4	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
ATP_bind_1	PF03029.12	gi|124028179|ref|YP_001013499.1|	-	0.00076	19.0	0.6	0.0015	18.0	0.1	1.7	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
APS_kinase	PF01583.15	gi|124028179|ref|YP_001013499.1|	-	0.00093	18.8	0.2	0.012	15.3	0.0	2.1	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_22	PF13401.1	gi|124028179|ref|YP_001013499.1|	-	0.00097	19.2	0.2	0.0027	17.8	0.1	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|124028179|ref|YP_001013499.1|	-	0.0013	18.3	0.8	0.003	17.1	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|124028179|ref|YP_001013499.1|	-	0.0019	17.8	1.1	0.0042	16.8	0.3	1.9	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|124028179|ref|YP_001013499.1|	-	0.002	17.8	0.0	0.0039	16.8	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
SKI	PF01202.17	gi|124028179|ref|YP_001013499.1|	-	0.0024	17.7	0.8	0.13	12.0	0.0	2.3	2	1	0	2	2	2	1	Shikimate	kinase
AAA_5	PF07728.9	gi|124028179|ref|YP_001013499.1|	-	0.0024	17.5	0.0	0.0043	16.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Viral_helicase1	PF01443.13	gi|124028179|ref|YP_001013499.1|	-	0.0038	16.7	0.0	0.0066	15.9	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
cobW	PF02492.14	gi|124028179|ref|YP_001013499.1|	-	0.014	14.8	0.2	0.033	13.6	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SE	PF00437.15	gi|124028179|ref|YP_001013499.1|	-	0.019	13.8	0.1	0.82	8.5	0.0	2.2	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_14	PF13173.1	gi|124028179|ref|YP_001013499.1|	-	0.021	14.7	0.0	0.033	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|124028179|ref|YP_001013499.1|	-	0.034	13.0	0.0	0.052	12.4	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
6PF2K	PF01591.13	gi|124028179|ref|YP_001013499.1|	-	0.04	12.9	0.0	0.06	12.4	0.0	1.2	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
Zeta_toxin	PF06414.7	gi|124028179|ref|YP_001013499.1|	-	0.043	12.9	0.1	0.11	11.6	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
DUF2075	PF09848.4	gi|124028179|ref|YP_001013499.1|	-	0.054	12.4	0.0	0.076	11.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_3	PF07726.6	gi|124028179|ref|YP_001013499.1|	-	0.064	12.8	0.1	0.18	11.3	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
HHH_5	PF14520.1	gi|124028179|ref|YP_001013499.1|	-	0.079	13.1	0.0	0.23	11.6	0.0	1.8	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
AAA_10	PF12846.2	gi|124028179|ref|YP_001013499.1|	-	0.12	11.8	0.2	0.32	10.3	0.1	1.6	1	1	1	2	2	2	0	AAA-like	domain
MMR_HSR1	PF01926.18	gi|124028179|ref|YP_001013499.1|	-	0.14	12.1	0.0	0.33	10.9	0.0	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_24	PF13479.1	gi|124028179|ref|YP_001013499.1|	-	0.19	11.2	0.4	0.35	10.4	0.1	1.5	2	0	0	2	2	1	0	AAA	domain
DUF3993	PF13158.1	gi|124028180|ref|YP_001013500.1|	-	0.11	12.2	0.1	0.18	11.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3993)
Ribosomal_L34e	PF01199.13	gi|124028181|ref|YP_001013501.1|	-	6.1e-33	112.9	3.7	7.4e-33	112.6	2.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L34e
DUF4428	PF14471.1	gi|124028181|ref|YP_001013501.1|	-	0.0043	16.7	0.1	0.22	11.3	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4428)
zf-RING_2	PF13639.1	gi|124028181|ref|YP_001013501.1|	-	0.032	14.0	0.0	0.078	12.8	0.0	1.7	1	1	0	1	1	1	0	Ring	finger	domain
Gin	PF10764.4	gi|124028181|ref|YP_001013501.1|	-	0.19	11.4	0.6	5.8	6.7	0.0	2.2	2	0	0	2	2	2	0	Inhibitor	of	sigma-G	Gin
zf-P11	PF03854.9	gi|124028181|ref|YP_001013501.1|	-	0.28	10.6	1.4	9.7	5.7	0.1	2.2	2	0	0	2	2	2	0	P-11	zinc	finger
Cytidylate_kin2	PF13189.1	gi|124028182|ref|YP_001013502.1|	-	1.6e-20	73.7	0.2	3.5e-18	66.1	0.1	2.1	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|124028182|ref|YP_001013502.1|	-	5.4e-17	62.2	0.1	9.2e-17	61.5	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124028182|ref|YP_001013502.1|	-	1.8e-16	61.0	0.2	3.7e-16	60.0	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124028182|ref|YP_001013502.1|	-	2.3e-08	34.0	0.0	5.8e-06	26.2	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|124028182|ref|YP_001013502.1|	-	1.2e-05	25.2	0.0	2.5e-05	24.3	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|124028182|ref|YP_001013502.1|	-	2.4e-05	24.3	0.0	4.9e-05	23.4	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
ADK	PF00406.17	gi|124028182|ref|YP_001013502.1|	-	3.8e-05	23.6	0.0	7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	Adenylate	kinase
AAA_22	PF13401.1	gi|124028182|ref|YP_001013502.1|	-	8.9e-05	22.6	0.1	0.00013	22.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124028182|ref|YP_001013502.1|	-	0.0001	22.5	0.0	0.00038	20.6	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|124028182|ref|YP_001013502.1|	-	0.00011	21.8	0.1	0.0012	18.5	0.0	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
Cytidylate_kin	PF02224.13	gi|124028182|ref|YP_001013502.1|	-	0.00015	21.2	0.1	0.0002	20.8	0.1	1.2	1	0	0	1	1	1	1	Cytidylate	kinase
NACHT	PF05729.7	gi|124028182|ref|YP_001013502.1|	-	0.00073	19.2	0.0	0.0014	18.2	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
SKI	PF01202.17	gi|124028182|ref|YP_001013502.1|	-	0.00085	19.2	0.2	0.0063	16.4	0.1	2.0	1	1	0	1	1	1	1	Shikimate	kinase
PRK	PF00485.13	gi|124028182|ref|YP_001013502.1|	-	0.0011	18.5	0.0	0.12	11.9	0.0	2.3	2	0	0	2	2	2	1	Phosphoribulokinase	/	Uridine	kinase	family
CoaE	PF01121.15	gi|124028182|ref|YP_001013502.1|	-	0.0012	18.2	0.0	0.67	9.3	0.0	2.2	2	0	0	2	2	2	2	Dephospho-CoA	kinase
KTI12	PF08433.5	gi|124028182|ref|YP_001013502.1|	-	0.0055	15.9	0.0	0.015	14.4	0.0	1.7	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
RNA_helicase	PF00910.17	gi|124028182|ref|YP_001013502.1|	-	0.0062	16.6	0.0	0.013	15.6	0.0	1.6	1	0	0	1	1	1	1	RNA	helicase
Zeta_toxin	PF06414.7	gi|124028182|ref|YP_001013502.1|	-	0.0072	15.4	0.1	0.024	13.7	0.0	1.9	3	0	0	3	3	3	1	Zeta	toxin
NTPase_1	PF03266.10	gi|124028182|ref|YP_001013502.1|	-	0.01	15.5	0.0	0.016	14.9	0.0	1.3	1	0	0	1	1	1	0	NTPase
AAA_10	PF12846.2	gi|124028182|ref|YP_001013502.1|	-	0.016	14.6	0.0	0.022	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
RuvB_N	PF05496.7	gi|124028182|ref|YP_001013502.1|	-	0.02	13.9	0.0	0.081	11.9	0.0	1.9	2	1	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
UPF0079	PF02367.12	gi|124028182|ref|YP_001013502.1|	-	0.021	14.4	0.0	0.047	13.3	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_5	PF07728.9	gi|124028182|ref|YP_001013502.1|	-	0.022	14.4	0.1	0.069	12.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.1	gi|124028182|ref|YP_001013502.1|	-	0.03	13.8	0.4	1.1	8.8	0.0	2.3	1	1	1	2	2	2	0	AAA	domain
Thymidylate_kin	PF02223.12	gi|124028182|ref|YP_001013502.1|	-	0.035	13.4	0.0	3.6	6.9	0.0	2.2	2	0	0	2	2	2	0	Thymidylate	kinase
ATP_bind_1	PF03029.12	gi|124028182|ref|YP_001013502.1|	-	0.052	13.0	0.0	0.086	12.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Viral_helicase1	PF01443.13	gi|124028182|ref|YP_001013502.1|	-	0.052	13.0	0.0	0.088	12.3	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_14	PF13173.1	gi|124028182|ref|YP_001013502.1|	-	0.053	13.4	0.0	0.15	11.9	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
RHH_1	PF01402.16	gi|124028182|ref|YP_001013502.1|	-	0.064	13.1	0.7	2.1	8.3	0.2	2.5	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
ABC_tran	PF00005.22	gi|124028182|ref|YP_001013502.1|	-	0.064	13.5	0.0	0.073	13.3	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
Mg_chelatase	PF01078.16	gi|124028182|ref|YP_001013502.1|	-	0.082	12.0	0.0	0.17	11.0	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
FtsK_SpoIIIE	PF01580.13	gi|124028182|ref|YP_001013502.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
MobB	PF03205.9	gi|124028182|ref|YP_001013502.1|	-	0.13	11.9	0.0	0.31	10.7	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.1	gi|124028182|ref|YP_001013502.1|	-	0.15	11.5	0.1	0.25	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
E3_binding	PF02817.12	gi|124028182|ref|YP_001013502.1|	-	0.21	11.2	1.3	30	4.3	0.0	3.4	3	0	0	3	3	3	0	e3	binding	domain
KOW	PF00467.24	gi|124028183|ref|YP_001013503.1|	-	7.1e-06	25.5	0.4	1.6e-05	24.3	0.3	1.6	1	0	0	1	1	1	1	KOW	motif
Ribosomal_L14e	PF01929.12	gi|124028183|ref|YP_001013503.1|	-	0.0015	18.8	0.0	0.0022	18.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L14
PUA	PF01472.15	gi|124028184|ref|YP_001013504.1|	-	4.3e-24	84.0	2.9	7.9e-24	83.1	2.0	1.5	1	0	0	1	1	1	1	PUA	domain
TruB_N	PF01509.13	gi|124028184|ref|YP_001013504.1|	-	1.2e-23	83.9	0.6	3e-15	56.6	0.2	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
DKCLD	PF08068.7	gi|124028184|ref|YP_001013504.1|	-	9.8e-18	63.8	0.1	2.3e-17	62.6	0.1	1.6	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
MTS	PF05175.9	gi|124028185|ref|YP_001013505.1|	-	1.7e-48	164.1	0.0	2e-48	163.9	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|124028185|ref|YP_001013505.1|	-	8.4e-22	77.4	0.0	1.2e-21	76.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124028185|ref|YP_001013505.1|	-	1.2e-19	70.5	0.0	2.1e-19	69.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124028185|ref|YP_001013505.1|	-	1.5e-18	67.4	0.0	2.5e-18	66.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|124028185|ref|YP_001013505.1|	-	4.9e-13	48.8	0.0	5.9e-13	48.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Met_10	PF02475.11	gi|124028185|ref|YP_001013505.1|	-	2.6e-12	46.7	0.0	3e-12	46.5	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_12	PF08242.7	gi|124028185|ref|YP_001013505.1|	-	1.5e-11	44.6	0.0	2.2e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124028185|ref|YP_001013505.1|	-	5.3e-10	39.6	0.0	1.4e-09	38.3	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028185|ref|YP_001013505.1|	-	5.7e-10	39.4	0.0	1e-09	38.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124028185|ref|YP_001013505.1|	-	7.8e-08	32.1	0.0	1.3e-07	31.3	0.0	1.4	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.1	gi|124028185|ref|YP_001013505.1|	-	1.1e-06	28.4	0.0	1.6e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|124028185|ref|YP_001013505.1|	-	1.2e-06	28.1	0.0	1.5e-06	27.8	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
GidB	PF02527.10	gi|124028185|ref|YP_001013505.1|	-	2.4e-06	26.8	0.1	3.2e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Cons_hypoth95	PF03602.10	gi|124028185|ref|YP_001013505.1|	-	3.3e-06	26.6	0.0	4.2e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_4	PF02390.12	gi|124028185|ref|YP_001013505.1|	-	8e-06	25.0	0.0	1.8e-05	23.9	0.0	1.5	2	0	0	2	2	2	1	Putative	methyltransferase
RrnaAD	PF00398.15	gi|124028185|ref|YP_001013505.1|	-	1.3e-05	24.4	0.0	1.6e-05	24.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Ubie_methyltran	PF01209.13	gi|124028185|ref|YP_001013505.1|	-	1.7e-05	24.0	0.0	2.2e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_16	PF10294.4	gi|124028185|ref|YP_001013505.1|	-	2.7e-05	23.6	0.0	3.6e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
N6_Mtase	PF02384.11	gi|124028185|ref|YP_001013505.1|	-	0.0001	21.5	0.0	0.0002	20.5	0.0	1.4	1	1	1	2	2	2	1	N-6	DNA	Methylase
PCMT	PF01135.14	gi|124028185|ref|YP_001013505.1|	-	0.00019	21.0	0.1	0.00024	20.6	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.13	gi|124028185|ref|YP_001013505.1|	-	0.00019	20.6	0.1	0.00028	20.1	0.1	1.2	1	0	0	1	1	1	1	O-methyltransferase
CMAS	PF02353.15	gi|124028185|ref|YP_001013505.1|	-	0.00042	19.4	0.0	0.00049	19.2	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_32	PF13679.1	gi|124028185|ref|YP_001013505.1|	-	0.0012	18.5	0.0	0.0015	18.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
FmrO	PF07091.6	gi|124028185|ref|YP_001013505.1|	-	0.0012	17.8	0.0	0.0017	17.4	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
DUF633	PF04816.7	gi|124028185|ref|YP_001013505.1|	-	0.0041	16.4	0.0	0.0064	15.8	0.0	1.4	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF633)
NodS	PF05401.6	gi|124028185|ref|YP_001013505.1|	-	0.01	15.2	0.0	0.015	14.6	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
tRNA_U5-meth_tr	PF05958.6	gi|124028185|ref|YP_001013505.1|	-	0.011	14.4	0.0	0.024	13.3	0.0	1.5	2	0	0	2	2	2	0	tRNA	(Uracil-5-)-methyltransferase
TrkA_N	PF02254.13	gi|124028185|ref|YP_001013505.1|	-	0.013	15.4	0.0	0.032	14.2	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
TehB	PF03848.9	gi|124028185|ref|YP_001013505.1|	-	0.018	14.1	0.0	0.023	13.8	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
Methyltransf_3	PF01596.12	gi|124028185|ref|YP_001013505.1|	-	0.022	13.8	0.0	0.034	13.1	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_24	PF13578.1	gi|124028185|ref|YP_001013505.1|	-	0.032	15.0	0.0	0.049	14.4	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
TRM	PF02005.11	gi|124028185|ref|YP_001013505.1|	-	0.035	13.0	0.0	0.048	12.5	0.0	1.2	1	0	0	1	1	1	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
MetW	PF07021.7	gi|124028185|ref|YP_001013505.1|	-	0.089	12.1	0.0	0.13	11.5	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
ADH_zinc_N	PF00107.21	gi|124028185|ref|YP_001013505.1|	-	0.11	12.1	0.0	0.23	11.0	0.0	1.7	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
Metallophos_2	PF12850.2	gi|124028186|ref|YP_001013506.1|	-	1.1e-31	109.8	0.0	1.4e-31	109.4	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|124028186|ref|YP_001013506.1|	-	4.3e-11	42.6	1.2	2.8e-10	39.9	0.9	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
FBPase_2	PF06874.6	gi|124028186|ref|YP_001013506.1|	-	0.00044	18.4	0.4	0.04	11.9	0.1	2.1	1	1	1	2	2	2	2	Firmicute	fructose-1,6-bisphosphatase
Metallophos_3	PF14582.1	gi|124028186|ref|YP_001013506.1|	-	0.0048	16.0	0.6	1.9	7.5	0.0	3.1	2	1	1	3	3	3	2	Metallophosphoesterase,	calcineurin	superfamily
DUF892	PF05974.7	gi|124028187|ref|YP_001013507.1|	-	0.00014	21.6	9.6	0.021	14.6	6.7	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF892)
Rubrerythrin	PF02915.12	gi|124028187|ref|YP_001013507.1|	-	0.00025	21.3	13.1	0.00068	19.9	9.0	1.8	1	1	1	2	2	2	1	Rubrerythrin
Ferritin	PF00210.19	gi|124028187|ref|YP_001013507.1|	-	0.0003	20.5	10.6	0.038	13.7	3.5	2.1	1	1	1	2	2	2	2	Ferritin-like	domain
DUF1662	PF07878.6	gi|124028187|ref|YP_001013507.1|	-	0.008	15.8	2.9	2.3	8.0	0.1	2.9	4	0	0	4	4	4	2	Protein	of	unknown	function	(DUF1662)
DUF2383	PF09537.5	gi|124028187|ref|YP_001013507.1|	-	0.0081	16.3	5.0	0.096	12.9	0.4	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2383)
Adaptin_N	PF01602.15	gi|124028187|ref|YP_001013507.1|	-	0.011	14.0	1.5	0.013	13.8	1.0	1.0	1	0	0	1	1	1	0	Adaptin	N	terminal	region
FCH	PF00611.18	gi|124028187|ref|YP_001013507.1|	-	0.021	14.9	6.0	0.079	13.1	1.1	2.7	2	1	1	3	3	3	0	Fes/CIP4,	and	EFC/F-BAR	homology	domain
Mannitol_dh	PF01232.18	gi|124028187|ref|YP_001013507.1|	-	0.07	13.0	3.2	1.7	8.5	0.5	2.1	1	1	1	2	2	2	0	Mannitol	dehydrogenase	Rossmann	domain
YkyA	PF10368.4	gi|124028187|ref|YP_001013507.1|	-	0.38	10.0	10.8	0.057	12.7	3.1	2.0	1	1	1	2	2	2	0	Putative	cell-wall	binding	lipoprotein
Peptidase_S46	PF10459.4	gi|124028187|ref|YP_001013507.1|	-	0.56	8.5	4.1	0.68	8.2	2.9	1.1	1	0	0	1	1	1	0	Peptidase	S46
Cor1	PF04803.7	gi|124028187|ref|YP_001013507.1|	-	0.56	9.9	5.7	0.4	10.4	1.9	2.0	1	1	1	2	2	2	0	Cor1/Xlr/Xmr	conserved	region
Metal_hydrol	PF10118.4	gi|124028187|ref|YP_001013507.1|	-	0.74	9.2	6.5	3.5	6.9	1.2	2.0	1	1	1	2	2	2	0	Predicted	metal-dependent	hydrolase
DUF1492	PF07374.6	gi|124028187|ref|YP_001013507.1|	-	0.78	9.8	3.7	1.5	8.9	1.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1492)
FlgN	PF05130.7	gi|124028187|ref|YP_001013507.1|	-	3.1	8.0	15.2	0.79	9.9	5.7	2.1	1	1	1	2	2	2	0	FlgN	protein
Abi	PF02517.11	gi|124028188|ref|YP_001013508.1|	-	6.2e-07	29.4	21.3	1.8e-05	24.8	14.7	2.5	1	1	0	1	1	1	1	CAAX	protease	self-immunity
DUF2301	PF10063.4	gi|124028188|ref|YP_001013508.1|	-	1.5	9.0	9.2	0.23	11.6	2.5	2.4	1	1	1	2	2	2	0	Uncharacterized	integral	membrane	protein	(DUF2301)
UbiA	PF01040.13	gi|124028189|ref|YP_001013509.1|	-	9.3e-46	156.1	27.3	1.2e-45	155.7	18.9	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Succ_CoA_lig	PF13607.1	gi|124028190|ref|YP_001013510.1|	-	1.8e-52	176.6	0.2	3.3e-52	175.7	0.1	1.5	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|124028190|ref|YP_001013510.1|	-	3.2e-29	101.4	1.1	5.6e-28	97.4	0.3	2.5	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|124028190|ref|YP_001013510.1|	-	1.1e-19	70.6	3.9	8.5e-19	67.8	0.2	2.7	2	1	0	2	2	2	1	CoA	binding	domain
F420_oxidored	PF03807.12	gi|124028190|ref|YP_001013510.1|	-	0.034	14.5	0.8	1.1	9.7	0.1	3.4	2	1	1	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
ATP-grasp_5	PF13549.1	gi|124028191|ref|YP_001013511.1|	-	1.1e-82	276.5	0.1	1.2e-82	276.3	0.1	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.5	gi|124028191|ref|YP_001013511.1|	-	7.3e-07	28.7	0.0	9.5e-07	28.3	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|124028191|ref|YP_001013511.1|	-	8.4e-06	25.6	0.0	1.3e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
RimK	PF08443.6	gi|124028191|ref|YP_001013511.1|	-	0.0022	17.5	0.0	0.0037	16.7	0.0	1.4	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|124028191|ref|YP_001013511.1|	-	0.0089	15.3	0.0	0.015	14.6	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Na_H_antiporter	PF03553.9	gi|124028192|ref|YP_001013512.1|	-	1.6e-79	267.1	17.8	1.6e-79	267.1	12.3	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
M20_dimer	PF07687.9	gi|124028193|ref|YP_001013513.1|	-	0.0014	18.3	0.0	0.0016	18.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
HTH_AsnC-type	PF13404.1	gi|124028194|ref|YP_001013514.1|	-	3.5e-16	58.4	4.2	6.1e-16	57.6	2.9	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|124028194|ref|YP_001013514.1|	-	1.7e-15	56.4	0.5	2.8e-15	55.7	0.3	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|124028194|ref|YP_001013514.1|	-	5.9e-15	54.3	0.8	8.8e-15	53.8	0.6	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|124028194|ref|YP_001013514.1|	-	6.5e-08	32.1	1.2	1.3e-07	31.1	0.2	1.9	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.2	gi|124028194|ref|YP_001013514.1|	-	8.4e-06	25.3	1.2	1.5e-05	24.5	0.5	1.6	2	0	0	2	2	2	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|124028194|ref|YP_001013514.1|	-	8.3e-05	21.9	0.4	0.0002	20.7	0.2	1.8	2	0	0	2	2	1	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|124028194|ref|YP_001013514.1|	-	0.00013	21.5	0.6	0.00025	20.5	0.4	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_20	PF12840.2	gi|124028194|ref|YP_001013514.1|	-	0.00013	21.6	0.2	0.00023	20.8	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|124028194|ref|YP_001013514.1|	-	0.00026	20.6	0.1	0.0012	18.5	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_DeoR	PF08220.7	gi|124028194|ref|YP_001013514.1|	-	0.0004	19.8	0.3	0.00091	18.7	0.1	1.6	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
NapD	PF03927.8	gi|124028194|ref|YP_001013514.1|	-	0.00046	19.9	0.5	0.00085	19.1	0.3	1.4	1	0	0	1	1	1	1	NapD	protein
Mga	PF05043.8	gi|124028194|ref|YP_001013514.1|	-	0.00066	19.9	0.0	0.0021	18.2	0.0	1.7	2	0	0	2	2	2	1	Mga	helix-turn-helix	domain
Rrf2	PF02082.15	gi|124028194|ref|YP_001013514.1|	-	0.00069	19.6	0.1	0.0076	16.3	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
Sigma70_r4	PF04545.11	gi|124028194|ref|YP_001013514.1|	-	0.00082	18.6	1.2	0.0014	17.8	0.8	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_IclR	PF09339.5	gi|124028194|ref|YP_001013514.1|	-	0.0011	18.5	0.2	0.0021	17.6	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|124028194|ref|YP_001013514.1|	-	0.0011	18.6	0.0	0.0018	17.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Mga	PF08280.6	gi|124028194|ref|YP_001013514.1|	-	0.0011	18.6	0.0	0.0018	17.9	0.0	1.3	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
PaaX	PF07848.7	gi|124028194|ref|YP_001013514.1|	-	0.0015	18.4	0.1	0.0029	17.5	0.0	1.5	1	0	0	1	1	1	1	PaaX-like	protein
TrmB	PF01978.14	gi|124028194|ref|YP_001013514.1|	-	0.0028	17.3	0.5	0.01	15.5	0.2	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_36	PF13730.1	gi|124028194|ref|YP_001013514.1|	-	0.0035	17.4	0.0	0.0061	16.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|124028194|ref|YP_001013514.1|	-	0.0036	17.1	0.0	0.0076	16.1	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_28	PF13518.1	gi|124028194|ref|YP_001013514.1|	-	0.0038	17.1	0.4	0.0063	16.4	0.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|124028194|ref|YP_001013514.1|	-	0.0042	16.8	0.1	0.01	15.5	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
DUF4423	PF14394.1	gi|124028194|ref|YP_001013514.1|	-	0.0045	16.5	0.1	0.0074	15.8	0.1	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_27	PF13463.1	gi|124028194|ref|YP_001013514.1|	-	0.0089	16.3	0.1	0.018	15.3	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
FaeA	PF04703.7	gi|124028194|ref|YP_001013514.1|	-	0.0097	16.0	1.0	0.47	10.6	0.1	2.3	2	0	0	2	2	2	1	FaeA-like	protein
DUF2250	PF10007.4	gi|124028194|ref|YP_001013514.1|	-	0.017	15.0	0.1	0.037	13.9	0.0	1.6	2	0	0	2	2	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_30	PF13556.1	gi|124028194|ref|YP_001013514.1|	-	0.034	13.7	0.2	0.068	12.7	0.1	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_10	PF04967.7	gi|124028194|ref|YP_001013514.1|	-	0.036	13.6	0.1	0.077	12.5	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF3489	PF11994.3	gi|124028194|ref|YP_001013514.1|	-	0.053	13.4	0.0	0.097	12.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
GntR	PF00392.16	gi|124028194|ref|YP_001013514.1|	-	0.053	12.9	0.1	0.11	11.9	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Tnp_ISL3	PF13542.1	gi|124028194|ref|YP_001013514.1|	-	0.076	12.2	0.0	0.14	11.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_34	PF13601.1	gi|124028194|ref|YP_001013514.1|	-	0.092	12.7	0.0	0.23	11.4	0.0	1.6	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
HTH_8	PF02954.14	gi|124028194|ref|YP_001013514.1|	-	0.097	12.2	0.2	0.2	11.2	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
DUF751	PF05421.6	gi|124028195|ref|YP_001013515.1|	-	0.11	12.7	0.1	0.2	11.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF751)
Glycos_trans_3N	PF02885.12	gi|124028196|ref|YP_001013516.1|	-	0.068	12.7	0.4	0.15	11.6	0.2	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family,	helical	bundle	domain
PIN	PF01850.16	gi|124028197|ref|YP_001013517.1|	-	2.4e-07	31.0	0.2	3e-07	30.7	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|124028198|ref|YP_001013518.1|	-	3.8e-06	26.4	0.3	6e-06	25.8	0.2	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
Molydop_binding	PF01568.16	gi|124028198|ref|YP_001013518.1|	-	0.14	11.9	0.1	0.18	11.6	0.0	1.1	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
CheZ	PF04344.8	gi|124028199|ref|YP_001013519.1|	-	0.023	14.3	0.1	0.026	14.1	0.1	1.1	1	0	0	1	1	1	0	Chemotaxis	phosphatase,	CheZ
NifU	PF01106.12	gi|124028199|ref|YP_001013519.1|	-	0.076	12.7	0.4	0.33	10.7	0.0	2.0	2	1	0	2	2	2	0	NifU-like	domain
Imm3	PF14425.1	gi|124028199|ref|YP_001013519.1|	-	0.1	12.5	0.2	0.13	12.1	0.2	1.2	1	0	0	1	1	1	0	Immunity	protein	Imm3
PIN	PF01850.16	gi|124028200|ref|YP_001013520.1|	-	3.9e-12	46.5	2.1	4.6e-12	46.3	1.5	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_2	PF10130.4	gi|124028200|ref|YP_001013520.1|	-	0.0013	18.7	0.1	0.0015	18.5	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|124028200|ref|YP_001013520.1|	-	0.058	14.0	0.1	0.085	13.5	0.1	1.3	1	0	0	1	1	1	0	PIN	domain
GCD14	PF08704.5	gi|124028204|ref|YP_001013524.1|	-	1.8e-31	109.5	0.0	1.3e-30	106.7	0.0	1.7	1	1	1	2	2	2	1	tRNA	methyltransferase	complex	GCD14	subunit
PCMT	PF01135.14	gi|124028204|ref|YP_001013524.1|	-	1.5e-18	67.0	0.0	2e-18	66.7	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_26	PF13659.1	gi|124028204|ref|YP_001013524.1|	-	1e-10	41.6	0.2	3.3e-10	40.0	0.1	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124028204|ref|YP_001013524.1|	-	2e-10	40.4	0.0	2.6e-10	40.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124028204|ref|YP_001013524.1|	-	3.7e-10	40.3	0.0	7.5e-10	39.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.12	gi|124028204|ref|YP_001013524.1|	-	1.8e-08	33.6	0.0	2.5e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.1	gi|124028204|ref|YP_001013524.1|	-	2.8e-07	31.3	0.1	1e-06	29.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|124028204|ref|YP_001013524.1|	-	3.7e-06	26.1	0.0	5.7e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_23	PF13489.1	gi|124028204|ref|YP_001013524.1|	-	2.6e-05	24.0	0.1	0.0006	19.5	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|124028204|ref|YP_001013524.1|	-	3.2e-05	23.5	0.0	0.0018	17.9	0.0	2.2	1	1	1	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.9	gi|124028204|ref|YP_001013524.1|	-	3.4e-05	23.3	0.0	4.7e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.15	gi|124028204|ref|YP_001013524.1|	-	0.00021	20.4	0.0	0.00031	19.9	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Fibrillarin	PF01269.12	gi|124028204|ref|YP_001013524.1|	-	0.00032	19.7	0.0	0.00046	19.1	0.0	1.2	1	0	0	1	1	1	1	Fibrillarin
Methyltransf_11	PF08241.7	gi|124028204|ref|YP_001013524.1|	-	0.00045	20.6	0.0	0.0019	18.6	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028204|ref|YP_001013524.1|	-	0.00072	19.8	0.0	0.0012	19.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124028204|ref|YP_001013524.1|	-	0.0021	18.4	0.0	0.01	16.2	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|124028204|ref|YP_001013524.1|	-	0.0055	15.8	0.0	0.0074	15.4	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_32	PF13679.1	gi|124028204|ref|YP_001013524.1|	-	0.029	14.0	0.0	0.04	13.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
DUF1610	PF07754.6	gi|124028205|ref|YP_001013525.1|	-	2.1e-16	59.6	18.2	9.4e-10	38.4	3.5	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_2	PF13240.1	gi|124028205|ref|YP_001013525.1|	-	0.00017	20.9	9.8	0.39	10.2	0.1	3.8	4	0	0	4	4	4	2	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124028205|ref|YP_001013525.1|	-	0.00034	20.0	1.4	0.00034	20.0	1.0	2.9	3	0	0	3	3	3	1	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|124028205|ref|YP_001013525.1|	-	0.00084	18.4	13.9	0.062	12.5	0.1	3.7	3	1	1	4	4	4	1	zinc-ribbon	domain
DZR	PF12773.2	gi|124028205|ref|YP_001013525.1|	-	0.0019	17.9	9.9	0.14	11.9	7.2	2.6	1	1	0	1	1	1	1	Double	zinc	ribbon
C1_3	PF07649.7	gi|124028205|ref|YP_001013525.1|	-	0.0036	17.3	7.0	0.44	10.6	1.2	2.2	2	0	0	2	2	2	2	C1-like	domain
PolC_DP2	PF03833.8	gi|124028205|ref|YP_001013525.1|	-	0.0041	14.8	3.4	0.0044	14.7	2.3	1.0	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
zf-MYND	PF01753.13	gi|124028205|ref|YP_001013525.1|	-	0.011	15.6	5.3	2.8	7.8	3.8	2.3	1	1	0	1	1	1	0	MYND	finger
UPF0547	PF10571.4	gi|124028205|ref|YP_001013525.1|	-	0.014	15.0	15.9	0.22	11.2	8.8	3.1	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-RING_3	PF14369.1	gi|124028205|ref|YP_001013525.1|	-	0.018	15.0	0.4	0.018	15.0	0.3	2.9	1	1	0	2	2	2	0	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|124028205|ref|YP_001013525.1|	-	0.027	14.1	9.6	0.047	13.3	0.4	2.5	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-TFIIB	PF13453.1	gi|124028205|ref|YP_001013525.1|	-	0.032	13.4	10.6	0.21	10.8	3.4	2.9	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
PhnA_Zn_Ribbon	PF08274.7	gi|124028205|ref|YP_001013525.1|	-	0.036	13.8	8.4	1.6	8.5	1.9	3.2	3	1	0	3	3	2	0	PhnA	Zinc-Ribbon
zf-B_box	PF00643.19	gi|124028205|ref|YP_001013525.1|	-	0.074	12.9	6.3	1.8	8.5	0.3	2.6	1	1	1	2	2	2	0	B-box	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|124028205|ref|YP_001013525.1|	-	0.08	12.7	19.8	3.1	7.6	11.7	3.8	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
IBR	PF01485.16	gi|124028205|ref|YP_001013525.1|	-	0.1	12.4	7.3	2.4	8.1	5.1	2.1	1	1	0	1	1	1	0	IBR	domain
RRN7	PF11781.3	gi|124028205|ref|YP_001013525.1|	-	0.11	12.0	0.3	0.11	12.0	0.2	3.5	2	1	2	4	4	4	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DUF1148	PF06618.6	gi|124028205|ref|YP_001013525.1|	-	0.14	12.0	0.1	0.17	11.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1148)
DUF164	PF02591.10	gi|124028205|ref|YP_001013525.1|	-	0.19	11.6	9.4	5.1	7.0	0.0	3.4	3	1	0	3	3	3	0	Putative	zinc	ribbon	domain
zf-C2H2	PF00096.21	gi|124028205|ref|YP_001013525.1|	-	0.19	12.1	11.5	8.8	6.9	0.1	3.9	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
NinF	PF05810.7	gi|124028205|ref|YP_001013525.1|	-	0.22	11.3	3.9	0.29	10.9	0.6	2.1	1	1	1	2	2	2	0	NinF	protein
zf-RING_5	PF14634.1	gi|124028205|ref|YP_001013525.1|	-	0.22	11.3	6.7	0.59	9.9	4.6	1.7	1	1	0	1	1	1	0	zinc-RING	finger	domain
C1_1	PF00130.17	gi|124028205|ref|YP_001013525.1|	-	0.23	11.2	8.6	0.19	11.5	2.7	2.4	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF4206	PF13901.1	gi|124028205|ref|YP_001013525.1|	-	0.31	10.5	3.9	0.37	10.3	2.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4206)
DUF2296	PF10058.4	gi|124028205|ref|YP_001013525.1|	-	0.31	10.8	16.4	1	9.1	0.1	3.8	2	1	2	4	4	4	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-C2HC5	PF06221.8	gi|124028205|ref|YP_001013525.1|	-	0.39	10.4	9.5	0.12	12.1	1.0	2.3	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
DUF1272	PF06906.6	gi|124028205|ref|YP_001013525.1|	-	0.47	10.3	9.7	18	5.2	6.8	2.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Zn-ribbon_8	PF09723.5	gi|124028205|ref|YP_001013525.1|	-	0.54	10.2	14.8	3.5	7.6	0.4	3.8	3	1	1	4	4	4	0	Zinc	ribbon	domain
HypA	PF01155.14	gi|124028205|ref|YP_001013525.1|	-	0.56	9.9	7.3	16	5.2	5.0	2.2	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Sgf11	PF08209.6	gi|124028205|ref|YP_001013525.1|	-	0.58	9.5	15.2	1.3	8.4	0.5	3.7	3	1	1	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
Acetone_carb_G	PF08882.6	gi|124028205|ref|YP_001013525.1|	-	0.8	9.7	2.8	1.3	9.0	0.1	2.1	1	1	0	2	2	2	0	Acetone	carboxylase	gamma	subunit
A2L_zn_ribbon	PF08792.5	gi|124028205|ref|YP_001013525.1|	-	0.92	9.0	12.4	0.71	9.4	1.2	3.2	2	2	0	2	2	2	0	A2L	zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|124028205|ref|YP_001013525.1|	-	1.1	9.0	10.1	1.5	8.6	3.0	2.4	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-Mss51	PF13824.1	gi|124028205|ref|YP_001013525.1|	-	1.2	8.9	12.2	4.9	7.0	1.3	2.9	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-AN1	PF01428.11	gi|124028205|ref|YP_001013525.1|	-	1.4	8.8	8.9	3.5	7.5	0.4	2.6	2	1	1	3	3	3	0	AN1-like	Zinc	finger
DNA_RNApol_7kD	PF03604.8	gi|124028205|ref|YP_001013525.1|	-	1.8	8.0	12.8	0.84	9.1	0.4	3.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-UBP	PF02148.14	gi|124028205|ref|YP_001013525.1|	-	2.8	8.1	6.7	8.8	6.5	0.4	2.5	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zf-dskA_traR	PF01258.12	gi|124028205|ref|YP_001013525.1|	-	3	7.6	11.2	26	4.6	0.0	3.7	3	1	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
NMD3	PF04981.8	gi|124028205|ref|YP_001013525.1|	-	3.2	6.7	7.2	4.2	6.4	5.0	1.1	1	0	0	1	1	1	0	NMD3	family
Tnp_zf-ribbon_2	PF13842.1	gi|124028205|ref|YP_001013525.1|	-	3.8	7.9	13.6	24	5.4	5.7	3.0	1	1	1	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
ZZ	PF00569.12	gi|124028205|ref|YP_001013525.1|	-	3.8	7.1	10.9	2.6	7.6	1.7	2.7	2	1	1	3	3	3	0	Zinc	finger,	ZZ	type
Nudix_N_2	PF14803.1	gi|124028205|ref|YP_001013525.1|	-	3.9	7.2	13.0	5.2	6.8	0.3	3.7	3	1	0	3	3	3	0	Nudix	N-terminal
DUF1451	PF07295.6	gi|124028205|ref|YP_001013525.1|	-	4.4	7.0	5.4	17	5.2	1.6	2.1	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1451)
Ribosomal_L32p	PF01783.18	gi|124028205|ref|YP_001013525.1|	-	4.7	7.4	6.8	37	4.6	2.0	3.0	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
zinc-ribbons_6	PF07191.7	gi|124028205|ref|YP_001013525.1|	-	5.4	6.8	7.0	11	5.8	3.1	2.2	1	1	1	2	2	2	0	zinc-ribbons
zf-tcix	PF14952.1	gi|124028205|ref|YP_001013525.1|	-	5.5	6.4	12.7	4.6	6.6	0.2	3.1	3	0	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
TFIIS_C	PF01096.13	gi|124028205|ref|YP_001013525.1|	-	6.3	6.5	14.2	4.2	7.0	0.3	3.8	2	1	3	5	5	5	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.1	gi|124028205|ref|YP_001013525.1|	-	6.4	6.5	16.3	3.7	7.3	0.1	3.9	1	1	3	4	4	4	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124028205|ref|YP_001013525.1|	-	6.8	6.0	18.9	0.47	9.8	3.9	3.0	3	1	1	4	4	3	0	TFIIB	zinc-binding
Rpr2	PF04032.11	gi|124028205|ref|YP_001013525.1|	-	8.1	6.4	7.6	80	3.2	5.2	2.1	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
PHD	PF00628.24	gi|124028205|ref|YP_001013525.1|	-	8.6	6.1	11.0	58	3.4	7.7	2.8	1	1	0	1	1	1	0	PHD-finger
TerY-C	PF15616.1	gi|124028205|ref|YP_001013525.1|	-	10	6.0	10.9	79	3.1	7.6	2.2	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
Auto_anti-p27	PF06677.7	gi|124028205|ref|YP_001013525.1|	-	10	6.0	12.3	1.1	9.0	1.1	2.7	2	2	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DsbD	PF02683.10	gi|124028206|ref|YP_001013526.1|	-	4.8e-16	58.9	18.6	5.6e-16	58.7	12.9	1.0	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2910	PF11139.3	gi|124028206|ref|YP_001013526.1|	-	0.0022	17.1	28.3	0.0027	16.9	19.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2910)
Glutaredoxin	PF00462.19	gi|124028207|ref|YP_001013527.1|	-	0.05	13.5	0.0	0.086	12.8	0.0	1.4	1	0	0	1	1	1	0	Glutaredoxin
Thioredoxin_7	PF13899.1	gi|124028207|ref|YP_001013527.1|	-	0.098	12.6	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin-like
EF1_GNE	PF00736.14	gi|124028209|ref|YP_001013529.1|	-	2.5e-23	81.5	0.4	2.7e-23	81.4	0.3	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
Glu-tRNAGln	PF02686.10	gi|124028209|ref|YP_001013529.1|	-	0.059	13.1	0.1	0.089	12.5	0.1	1.3	1	0	0	1	1	1	0	Glu-tRNAGln	amidotransferase	C	subunit
MAP	PF03642.8	gi|124028209|ref|YP_001013529.1|	-	0.12	12.6	0.0	1.9	8.7	0.0	2.0	2	0	0	2	2	2	0	MAP	domain
AAA	PF00004.24	gi|124028210|ref|YP_001013530.1|	-	6.6e-98	324.0	0.0	1.2e-49	167.8	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|124028210|ref|YP_001013530.1|	-	7.5e-32	109.1	4.0	2.8e-31	107.2	1.4	2.8	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
CDC48_2	PF02933.12	gi|124028210|ref|YP_001013530.1|	-	7.4e-16	57.5	1.3	1.8e-15	56.3	0.9	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.7	gi|124028210|ref|YP_001013530.1|	-	3.1e-15	55.8	0.0	4.8e-08	32.3	0.0	2.7	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|124028210|ref|YP_001013530.1|	-	4.4e-14	52.7	0.0	3.3e-07	30.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.1	gi|124028210|ref|YP_001013530.1|	-	1.3e-13	51.1	1.1	4.8e-05	23.5	0.0	4.4	2	2	1	3	3	3	2	AAA	domain
AAA_17	PF13207.1	gi|124028210|ref|YP_001013530.1|	-	6.1e-13	49.6	0.1	1.3e-06	29.2	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|124028210|ref|YP_001013530.1|	-	2.7e-12	47.0	0.0	7.3e-06	26.0	0.0	2.9	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_5	PF07728.9	gi|124028210|ref|YP_001013530.1|	-	7.1e-12	45.2	0.9	6.6e-05	22.6	0.0	4.3	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|124028210|ref|YP_001013530.1|	-	2.9e-11	43.3	0.0	1.3e-05	25.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|124028210|ref|YP_001013530.1|	-	3.4e-10	39.2	0.0	0.00033	19.4	0.0	2.5	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_33	PF13671.1	gi|124028210|ref|YP_001013530.1|	-	5.4e-10	39.3	0.0	0.00057	19.7	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|124028210|ref|YP_001013530.1|	-	1.4e-09	37.3	0.0	0.00026	20.1	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
IstB_IS21	PF01695.12	gi|124028210|ref|YP_001013530.1|	-	9.5e-09	34.9	0.8	0.0022	17.4	0.0	2.3	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|124028210|ref|YP_001013530.1|	-	1.2e-08	35.3	0.0	0.0027	18.0	0.0	3.1	3	0	0	3	3	2	2	AAA	domain
Arch_ATPase	PF01637.13	gi|124028210|ref|YP_001013530.1|	-	1.9e-07	31.0	0.7	0.00045	20.0	0.0	3.6	2	2	1	3	3	3	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|124028210|ref|YP_001013530.1|	-	7.6e-07	28.8	1.3	0.028	14.1	0.2	3.0	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_24	PF13479.1	gi|124028210|ref|YP_001013530.1|	-	1.1e-06	28.4	0.1	0.012	15.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.17	gi|124028210|ref|YP_001013530.1|	-	1.5e-06	28.3	0.0	0.016	15.3	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_28	PF13521.1	gi|124028210|ref|YP_001013530.1|	-	1.6e-06	28.1	0.0	0.023	14.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.21	gi|124028210|ref|YP_001013530.1|	-	1.9e-06	27.4	0.1	0.04	13.4	0.0	3.7	2	1	0	2	2	2	2	Sigma-54	interaction	domain
AAA_25	PF13481.1	gi|124028210|ref|YP_001013530.1|	-	2e-06	27.3	8.3	0.35	10.2	0.1	4.4	2	2	1	4	4	4	2	AAA	domain
Mg_chelatase	PF01078.16	gi|124028210|ref|YP_001013530.1|	-	2e-06	27.1	0.8	0.057	12.5	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
DUF815	PF05673.8	gi|124028210|ref|YP_001013530.1|	-	3.6e-06	26.0	0.0	0.013	14.4	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Sigma54_activ_2	PF14532.1	gi|124028210|ref|YP_001013530.1|	-	3.2e-05	23.9	0.0	0.4	10.7	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|124028210|ref|YP_001013530.1|	-	6.2e-05	23.3	0.0	0.12	12.6	0.0	2.4	2	0	0	2	2	2	1	ABC	transporter
NACHT	PF05729.7	gi|124028210|ref|YP_001013530.1|	-	0.00014	21.5	1.4	0.24	11.0	0.0	4.1	5	0	0	5	5	4	1	NACHT	domain
KaiC	PF06745.8	gi|124028210|ref|YP_001013530.1|	-	0.00014	21.0	0.6	1.1	8.3	0.0	3.5	2	1	1	3	3	3	2	KaiC
AAA_3	PF07726.6	gi|124028210|ref|YP_001013530.1|	-	0.00026	20.5	0.0	0.2	11.2	0.0	2.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Bac_DnaA	PF00308.13	gi|124028210|ref|YP_001013530.1|	-	0.00033	20.3	0.0	0.055	13.1	0.0	2.9	2	2	0	2	2	2	1	Bacterial	dnaA	protein
Parvo_NS1	PF01057.12	gi|124028210|ref|YP_001013530.1|	-	0.00045	19.1	0.2	0.14	11.0	0.0	2.3	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
NB-ARC	PF00931.17	gi|124028210|ref|YP_001013530.1|	-	0.00066	18.6	0.0	0.1	11.4	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
PhoH	PF02562.11	gi|124028210|ref|YP_001013530.1|	-	0.00071	18.8	1.6	0.13	11.4	0.1	2.8	3	0	0	3	3	3	1	PhoH-like	protein
UPF0079	PF02367.12	gi|124028210|ref|YP_001013530.1|	-	0.0011	18.6	0.0	2.6	7.6	0.0	3.4	3	0	0	3	3	3	1	Uncharacterised	P-loop	hydrolase	UPF0079
SKI	PF01202.17	gi|124028210|ref|YP_001013530.1|	-	0.0017	18.2	0.0	0.94	9.3	0.0	2.7	2	0	0	2	2	2	1	Shikimate	kinase
NTPase_1	PF03266.10	gi|124028210|ref|YP_001013530.1|	-	0.0019	17.9	6.5	2.1	8.0	0.0	5.3	3	3	1	6	6	6	1	NTPase
Vps4_C	PF09336.5	gi|124028210|ref|YP_001013530.1|	-	0.0019	18.0	0.1	0.21	11.4	0.0	3.0	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AFG1_ATPase	PF03969.11	gi|124028210|ref|YP_001013530.1|	-	0.0023	16.7	0.0	1.6	7.4	0.0	2.5	2	0	0	2	2	2	1	AFG1-like	ATPase
ATP-synt_ab	PF00006.20	gi|124028210|ref|YP_001013530.1|	-	0.0029	17.1	0.0	1.8	7.9	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ResIII	PF04851.10	gi|124028210|ref|YP_001013530.1|	-	0.0061	16.4	0.0	1.9	8.2	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Viral_helicase1	PF01443.13	gi|124028210|ref|YP_001013530.1|	-	0.0064	16.0	0.0	0.47	9.9	0.0	2.2	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
DUF2075	PF09848.4	gi|124028210|ref|YP_001013530.1|	-	0.0085	15.1	0.0	2.7	6.8	0.0	2.4	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
T2SE	PF00437.15	gi|124028210|ref|YP_001013530.1|	-	0.01	14.7	0.0	5	5.9	0.0	2.7	3	0	0	3	3	2	0	Type	II/IV	secretion	system	protein
AAA_10	PF12846.2	gi|124028210|ref|YP_001013530.1|	-	0.02	14.3	3.1	2.7	7.3	0.1	3.9	3	2	1	4	4	3	0	AAA-like	domain
MMR_HSR1	PF01926.18	gi|124028210|ref|YP_001013530.1|	-	0.026	14.4	0.0	2.7	7.9	0.0	2.7	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
KAP_NTPase	PF07693.9	gi|124028210|ref|YP_001013530.1|	-	0.057	12.3	0.5	18	4.1	0.0	3.1	2	2	0	3	3	3	0	KAP	family	P-loop	domain
Guanylate_kin	PF00625.16	gi|124028210|ref|YP_001013530.1|	-	0.078	12.4	0.4	34	3.8	0.0	3.4	3	1	1	4	4	3	0	Guanylate	kinase
IPT	PF01745.11	gi|124028210|ref|YP_001013530.1|	-	0.08	12.0	0.3	13	4.8	0.0	2.4	2	0	0	2	2	2	0	Isopentenyl	transferase
AAA_11	PF13086.1	gi|124028210|ref|YP_001013530.1|	-	0.088	12.3	0.0	8	5.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
VPR	PF00522.13	gi|124028210|ref|YP_001013530.1|	-	0.098	12.4	0.0	12	5.7	0.0	2.5	2	0	0	2	2	2	0	VPR/VPX	protein
PduV-EutP	PF10662.4	gi|124028210|ref|YP_001013530.1|	-	0.11	11.9	0.0	6.5	6.2	0.0	2.4	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
UFD1	PF03152.9	gi|124028210|ref|YP_001013530.1|	-	0.12	11.5	0.1	0.24	10.5	0.0	1.4	1	0	0	1	1	1	0	Ubiquitin	fusion	degradation	protein	UFD1
cobW	PF02492.14	gi|124028210|ref|YP_001013530.1|	-	0.13	11.6	0.1	10	5.5	0.0	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
UMPH-1	PF05822.7	gi|124028210|ref|YP_001013530.1|	-	0.17	11.1	0.0	0.32	10.2	0.0	1.4	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
KTI12	PF08433.5	gi|124028210|ref|YP_001013530.1|	-	0.2	10.8	0.0	10	5.2	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
PIN	PF01850.16	gi|124028211|ref|YP_001013531.1|	-	2.8e-17	63.1	0.1	3.3e-17	62.9	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|124028211|ref|YP_001013531.1|	-	0.017	15.7	0.0	0.032	14.9	0.0	1.5	1	1	0	1	1	1	0	PIN	domain
Antitoxin-MazE	PF04014.13	gi|124028212|ref|YP_001013532.1|	-	2.8e-14	52.4	0.4	4.4e-14	51.8	0.1	1.4	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
CDC48_N	PF02359.13	gi|124028212|ref|YP_001013532.1|	-	0.0035	17.2	1.7	0.42	10.6	0.3	2.2	1	1	1	2	2	2	2	Cell	division	protein	48	(CDC48),	N-terminal	domain
MRP-S26	PF14943.1	gi|124028212|ref|YP_001013532.1|	-	0.014	14.9	0.1	0.019	14.4	0.1	1.2	1	0	0	1	1	1	0	Mitochondrial	ribosome	subunit	S26
PUA	PF01472.15	gi|124028212|ref|YP_001013532.1|	-	0.018	14.7	0.1	0.027	14.1	0.1	1.3	1	0	0	1	1	1	0	PUA	domain
NusA_N	PF08529.6	gi|124028212|ref|YP_001013532.1|	-	0.046	13.7	1.3	1.2	9.1	0.1	2.1	2	0	0	2	2	2	0	NusA	N-terminal	domain
eIF-1a	PF01176.14	gi|124028212|ref|YP_001013532.1|	-	0.05	13.0	0.7	0.66	9.4	0.0	2.3	1	1	1	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
APS_kinase	PF01583.15	gi|124028214|ref|YP_001013534.1|	-	2.2e-60	202.8	0.0	2.6e-60	202.6	0.0	1.0	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_33	PF13671.1	gi|124028214|ref|YP_001013534.1|	-	3.3e-12	46.4	0.0	4.5e-12	46.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
KTI12	PF08433.5	gi|124028214|ref|YP_001013534.1|	-	5.2e-11	42.2	0.0	6.1e-11	42.0	0.0	1.1	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_18	PF13238.1	gi|124028214|ref|YP_001013534.1|	-	1.5e-09	38.2	0.0	3e-09	37.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|124028214|ref|YP_001013534.1|	-	2e-08	35.0	0.1	3.5e-08	34.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|124028214|ref|YP_001013534.1|	-	5.3e-05	23.1	0.0	0.00016	21.5	0.0	1.8	1	1	0	1	1	1	1	Shikimate	kinase
NTPase_1	PF03266.10	gi|124028214|ref|YP_001013534.1|	-	0.0003	20.5	0.0	0.00067	19.3	0.0	1.6	2	0	0	2	2	1	1	NTPase
Zeta_toxin	PF06414.7	gi|124028214|ref|YP_001013534.1|	-	0.00037	19.6	0.0	0.00066	18.8	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_19	PF13245.1	gi|124028214|ref|YP_001013534.1|	-	0.00041	20.0	0.2	0.002	17.8	0.0	2.0	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|124028214|ref|YP_001013534.1|	-	0.00045	19.8	0.0	0.00078	19.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|124028214|ref|YP_001013534.1|	-	0.00047	20.3	0.0	0.0087	16.2	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124028214|ref|YP_001013534.1|	-	0.0019	18.4	0.0	0.0035	17.5	0.0	1.5	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|124028214|ref|YP_001013534.1|	-	0.0024	17.9	0.1	0.01	15.8	0.0	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
CPT	PF07931.7	gi|124028214|ref|YP_001013534.1|	-	0.0036	16.9	0.1	0.056	13.0	0.1	2.3	1	1	0	1	1	1	1	Chloramphenicol	phosphotransferase-like	protein
Thymidylate_kin	PF02223.12	gi|124028214|ref|YP_001013534.1|	-	0.0039	16.5	0.0	0.0096	15.3	0.0	1.7	2	0	0	2	2	2	1	Thymidylate	kinase
MobB	PF03205.9	gi|124028214|ref|YP_001013534.1|	-	0.0041	16.8	0.0	0.007	16.0	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|124028214|ref|YP_001013534.1|	-	0.01	14.6	0.0	0.018	13.8	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_5	PF07728.9	gi|124028214|ref|YP_001013534.1|	-	0.059	13.0	0.0	0.098	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.2	gi|124028214|ref|YP_001013534.1|	-	0.066	12.6	0.0	0.074	12.4	0.0	1.5	1	1	0	1	1	1	0	AAA-like	domain
AAA_28	PF13521.1	gi|124028214|ref|YP_001013534.1|	-	0.07	13.0	0.1	0.57	10.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|124028214|ref|YP_001013534.1|	-	0.076	13.3	0.0	0.13	12.6	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
cobW	PF02492.14	gi|124028214|ref|YP_001013534.1|	-	0.099	12.0	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.17	gi|124028214|ref|YP_001013534.1|	-	0.15	11.4	0.0	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|124028214|ref|YP_001013534.1|	-	0.18	11.1	0.6	0.37	10.1	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
EamA	PF00892.15	gi|124028215|ref|YP_001013535.1|	-	2.3e-07	30.8	15.5	2.3e-07	30.8	10.7	1.7	1	1	1	2	2	2	1	EamA-like	transporter	family
EmrE	PF13536.1	gi|124028215|ref|YP_001013535.1|	-	0.0048	17.0	10.0	0.0048	17.0	7.0	2.1	1	1	1	2	2	2	1	Multidrug	resistance	efflux	transporter
Multi_Drug_Res	PF00893.14	gi|124028215|ref|YP_001013535.1|	-	0.034	14.6	7.1	0.02	15.3	3.3	1.8	1	1	1	2	2	2	0	Small	Multidrug	Resistance	protein
DUF1084	PF06454.6	gi|124028215|ref|YP_001013535.1|	-	0.042	12.8	0.6	0.05	12.6	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1084)
DUF4184	PF13803.1	gi|124028215|ref|YP_001013535.1|	-	0.046	13.0	0.1	0.06	12.6	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
TPT	PF03151.11	gi|124028215|ref|YP_001013535.1|	-	0.097	12.3	7.0	0.26	10.9	4.9	1.7	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
XPG_I	PF00867.13	gi|124028216|ref|YP_001013536.1|	-	1.5e-26	92.2	0.0	2.4e-26	91.6	0.0	1.3	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.12	gi|124028216|ref|YP_001013536.1|	-	5.6e-20	71.4	0.0	1.1e-19	70.5	0.0	1.5	1	0	0	1	1	1	1	XPG	N-terminal	domain
Lumazine_bd	PF12870.2	gi|124028216|ref|YP_001013536.1|	-	0.0078	16.2	1.0	0.015	15.2	0.2	1.7	2	0	0	2	2	2	1	Lumazine-binding	domain
DUF531	PF04407.7	gi|124028216|ref|YP_001013536.1|	-	0.0098	15.7	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF531)
5_3_exonuc	PF01367.15	gi|124028216|ref|YP_001013536.1|	-	0.014	15.5	0.0	0.036	14.2	0.0	1.7	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
DUF1771	PF08590.5	gi|124028216|ref|YP_001013536.1|	-	2.9	7.9	10.3	0.075	13.0	1.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1771)
Put_DNA-bind_N	PF06971.8	gi|124028217|ref|YP_001013537.1|	-	0.071	12.8	0.0	0.8	9.5	0.0	2.2	2	0	0	2	2	2	0	Putative	DNA-binding	protein	N-terminus
NiFeSe_Hases	PF00374.14	gi|124028218|ref|YP_001013538.1|	-	2.2e-44	152.1	0.0	7.3e-26	91.0	0.1	4.2	2	1	1	3	3	3	3	Nickel-dependent	hydrogenase
Fer4_8	PF13183.1	gi|124028219|ref|YP_001013539.1|	-	3.7e-11	42.8	3.6	4.2e-11	42.6	1.4	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124028219|ref|YP_001013539.1|	-	9.9e-11	41.8	4.8	1.5e-10	41.2	2.0	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124028219|ref|YP_001013539.1|	-	6.7e-08	32.8	2.6	0.0052	17.1	0.1	3.4	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124028219|ref|YP_001013539.1|	-	1.2e-07	31.9	7.4	1.2e-07	31.9	5.1	2.5	2	2	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028219|ref|YP_001013539.1|	-	1.1e-06	28.7	16.6	8.4e-06	25.9	5.7	2.9	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124028219|ref|YP_001013539.1|	-	7.1e-06	25.7	18.0	2e-05	24.2	6.9	3.0	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124028219|ref|YP_001013539.1|	-	9.9e-06	24.9	20.1	0.00015	21.2	2.8	3.0	3	0	0	3	3	2	2	4Fe-4S	binding	domain
CCG	PF02754.11	gi|124028219|ref|YP_001013539.1|	-	2.2e-05	24.3	1.6	0.00043	20.2	0.0	3.4	3	0	0	3	3	3	1	Cysteine-rich	domain
Fer4_16	PF13484.1	gi|124028219|ref|YP_001013539.1|	-	3.8e-05	24.3	4.7	3.8e-05	24.3	3.3	2.7	2	2	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|124028219|ref|YP_001013539.1|	-	0.00026	20.7	15.6	0.00073	19.3	1.4	3.0	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124028219|ref|YP_001013539.1|	-	0.0014	18.4	19.3	0.014	15.2	1.6	3.0	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124028219|ref|YP_001013539.1|	-	0.011	15.5	13.2	0.021	14.6	0.4	2.8	3	0	0	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|124028219|ref|YP_001013539.1|	-	0.014	15.7	7.0	0.36	11.2	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|124028219|ref|YP_001013539.1|	-	0.015	15.5	2.6	0.015	15.5	1.8	3.2	4	0	0	4	4	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|124028219|ref|YP_001013539.1|	-	0.038	14.5	9.2	0.062	13.8	0.8	2.6	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Cytochrom_B_N_2	PF13631.1	gi|124028220|ref|YP_001013540.1|	-	4.7	6.9	16.0	1.7	8.3	3.3	3.0	1	1	0	2	2	2	0	Cytochrome	b(N-terminal)/b6/petB
NiFe_hyd_SSU_C	PF14720.1	gi|124028221|ref|YP_001013541.1|	-	2.9e-25	88.1	0.9	4.8e-25	87.4	0.6	1.4	1	0	0	1	1	1	1	NiFe/NiFeSe	hydrogenase	small	subunit	C-terminal
Oxidored_q6	PF01058.17	gi|124028221|ref|YP_001013541.1|	-	1.1e-09	37.9	0.0	1.9e-07	30.7	0.0	3.3	2	1	0	2	2	2	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
TAT_signal	PF10518.4	gi|124028221|ref|YP_001013541.1|	-	2.2	8.4	10.9	0.07	13.1	1.0	2.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
HycI	PF01750.13	gi|124028222|ref|YP_001013542.1|	-	0.011	15.3	0.0	0.047	13.2	0.0	1.9	1	1	0	1	1	1	0	Hydrogenase	maturation	protease
PTS_2-RNA	PF01885.11	gi|124028223|ref|YP_001013543.1|	-	4.2e-45	153.3	0.0	5.2e-45	153.0	0.0	1.0	1	0	0	1	1	1	1	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
PARP	PF00644.15	gi|124028223|ref|YP_001013543.1|	-	0.0053	16.1	0.0	0.0078	15.6	0.0	1.2	1	0	0	1	1	1	1	Poly(ADP-ribose)	polymerase	catalytic	domain
Atu4866	PF11512.3	gi|124028223|ref|YP_001013543.1|	-	0.053	13.2	0.1	0.11	12.2	0.1	1.5	1	0	0	1	1	1	0	Agrobacterium	tumefaciens	protein	Atu4866
Mem_trans	PF03547.13	gi|124028224|ref|YP_001013544.1|	-	8.5e-06	24.2	28.9	1.5e-05	23.4	7.4	2.1	1	1	1	2	2	2	2	Membrane	transport	protein
adh_short_C2	PF13561.1	gi|124028225|ref|YP_001013545.1|	-	3e-23	82.8	0.0	3.6e-23	82.5	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|124028225|ref|YP_001013545.1|	-	4.7e-19	68.8	0.3	9.6e-19	67.9	0.2	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|124028225|ref|YP_001013545.1|	-	3.6e-06	26.7	0.0	6.1e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	KR	domain
HTH_AsnC-type	PF13404.1	gi|124028225|ref|YP_001013545.1|	-	0.066	12.7	0.7	0.16	11.5	0.0	2.0	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Reeler	PF02014.11	gi|124028226|ref|YP_001013546.1|	-	5.4e-06	26.6	3.8	1.8e-05	25.0	0.2	2.5	2	1	0	2	2	2	1	Reeler	domain
DUF4448	PF14610.1	gi|124028226|ref|YP_001013546.1|	-	0.0053	16.2	1.5	0.0053	16.2	1.0	2.4	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF4448)
DUF3439	PF11921.3	gi|124028226|ref|YP_001013546.1|	-	0.015	15.0	4.7	0.033	13.9	3.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3439)
SSP160	PF06933.6	gi|124028226|ref|YP_001013546.1|	-	0.21	9.5	6.1	0.32	8.9	4.3	1.2	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
Dicty_REP	PF05086.7	gi|124028226|ref|YP_001013546.1|	-	0.5	8.0	4.2	0.65	7.6	2.9	1.0	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
SKG6	PF08693.5	gi|124028226|ref|YP_001013546.1|	-	4.2	6.7	11.9	0.19	11.0	0.9	2.8	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
Fer4	PF00037.22	gi|124028227|ref|YP_001013547.1|	-	0.00048	19.6	10.3	0.0045	16.5	2.0	3.4	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|124028227|ref|YP_001013547.1|	-	0.017	15.6	0.3	0.017	15.6	0.2	2.0	3	0	0	3	3	1	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|124028227|ref|YP_001013547.1|	-	0.018	15.3	0.9	0.018	15.3	0.6	2.8	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124028227|ref|YP_001013547.1|	-	0.023	14.5	9.0	0.078	12.8	0.6	3.4	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|124028227|ref|YP_001013547.1|	-	0.03	14.2	2.9	0.03	14.2	2.0	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|124028227|ref|YP_001013547.1|	-	0.032	14.5	8.1	0.2	12.0	4.9	2.6	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124028227|ref|YP_001013547.1|	-	0.053	14.2	2.9	0.33	11.7	0.6	2.4	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|124028227|ref|YP_001013547.1|	-	0.12	12.2	7.2	0.17	11.7	3.2	2.2	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124028227|ref|YP_001013547.1|	-	0.26	11.1	9.1	0.039	13.7	3.0	2.2	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124028227|ref|YP_001013547.1|	-	0.4	10.7	4.7	0.13	12.2	1.1	1.9	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|124028227|ref|YP_001013547.1|	-	0.45	10.9	2.5	1.1	9.7	1.7	1.6	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|124028227|ref|YP_001013547.1|	-	3.8	8.0	7.1	0.88	10.0	2.1	2.1	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.17	gi|124028229|ref|YP_001013549.1|	-	2.1e-49	168.4	0.0	1.2e-48	165.9	0.0	2.2	2	1	0	2	2	2	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|124028229|ref|YP_001013549.1|	-	6.4e-25	87.1	0.0	2e-24	85.5	0.0	1.9	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|124028229|ref|YP_001013549.1|	-	3.8e-07	29.8	0.5	1.3e-06	28.1	0.3	1.9	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
FMN_dh	PF01070.13	gi|124028229|ref|YP_001013549.1|	-	0.00012	21.0	0.8	0.011	14.6	0.1	2.2	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
DUF521	PF04412.8	gi|124028229|ref|YP_001013549.1|	-	0.22	10.0	0.1	0.34	9.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Fer4_7	PF12838.2	gi|124028230|ref|YP_001013550.1|	-	6.3e-16	58.5	40.8	1.8e-07	31.4	5.7	3.5	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124028230|ref|YP_001013550.1|	-	6.5e-15	54.2	30.9	1.8e-05	24.3	2.0	4.5	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124028230|ref|YP_001013550.1|	-	4.9e-14	51.9	15.7	2e-08	33.9	1.9	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124028230|ref|YP_001013550.1|	-	2.6e-13	49.5	21.9	2e-05	24.3	5.2	3.9	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028230|ref|YP_001013550.1|	-	4.7e-13	49.1	21.9	4.1e-06	26.9	5.9	3.2	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124028230|ref|YP_001013550.1|	-	2.6e-12	46.5	17.5	8e-08	32.1	2.5	2.9	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124028230|ref|YP_001013550.1|	-	3.8e-12	45.4	30.3	0.0086	16.3	0.7	4.5	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|124028230|ref|YP_001013550.1|	-	3.9e-12	45.2	40.3	9e-05	21.9	2.5	5.4	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|124028230|ref|YP_001013550.1|	-	8.4e-11	41.1	34.2	0.0042	16.9	2.6	4.7	5	0	0	5	5	4	4	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|124028230|ref|YP_001013550.1|	-	2.1e-09	37.5	19.6	0.0023	18.2	0.2	4.0	3	1	1	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124028230|ref|YP_001013550.1|	-	5e-09	36.7	23.5	0.0025	18.5	5.0	4.4	2	1	2	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|124028230|ref|YP_001013550.1|	-	7.3e-07	29.5	24.0	0.0099	16.2	0.5	4.5	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|124028230|ref|YP_001013550.1|	-	8.3e-06	26.0	44.3	0.0027	18.1	3.8	4.7	5	0	0	5	5	4	4	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|124028230|ref|YP_001013550.1|	-	0.0017	18.1	8.4	0.0017	18.1	5.8	2.3	2	1	1	3	3	2	1	4Fe-4S	dicluster	domain
TAT_signal	PF10518.4	gi|124028230|ref|YP_001013550.1|	-	0.0018	18.1	1.5	0.0039	17.0	1.0	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Fer4_15	PF13459.1	gi|124028230|ref|YP_001013550.1|	-	6.6	7.3	26.6	6.7	7.3	2.3	4.5	2	1	2	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_5	PF12801.2	gi|124028231|ref|YP_001013551.1|	-	4.7e-13	48.7	21.1	6e-10	38.7	0.5	4.5	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|124028231|ref|YP_001013551.1|	-	1.2e-09	37.3	14.8	4.6e-05	22.8	0.8	4.0	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|124028231|ref|YP_001013551.1|	-	2.7e-09	36.9	32.0	2.3e-06	27.5	8.3	2.8	2	1	2	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124028231|ref|YP_001013551.1|	-	3e-08	33.8	13.8	2e-07	31.2	8.0	2.9	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028231|ref|YP_001013551.1|	-	3.3e-08	33.6	9.3	3.3e-08	33.6	6.4	2.3	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124028231|ref|YP_001013551.1|	-	1e-07	31.6	9.4	1e-07	31.6	6.5	2.2	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124028231|ref|YP_001013551.1|	-	2.1e-06	27.9	11.6	0.0054	17.0	2.5	3.2	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124028231|ref|YP_001013551.1|	-	2.9e-05	24.0	20.1	0.0013	18.9	1.5	3.8	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124028231|ref|YP_001013551.1|	-	0.0003	20.5	21.1	0.0021	17.8	1.9	3.2	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124028231|ref|YP_001013551.1|	-	0.00036	20.3	18.2	0.0074	16.1	4.1	3.5	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124028231|ref|YP_001013551.1|	-	0.00047	20.8	11.5	0.0071	17.0	0.2	3.0	4	0	0	4	4	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|124028231|ref|YP_001013551.1|	-	0.0021	18.4	22.0	0.03	14.7	2.6	3.6	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124028231|ref|YP_001013551.1|	-	0.0024	17.6	19.9	0.0091	15.8	1.1	3.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|124028231|ref|YP_001013551.1|	-	0.014	15.9	29.0	0.015	15.8	3.8	4.1	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|124028231|ref|YP_001013551.1|	-	0.22	11.1	0.2	0.22	11.1	0.1	3.0	2	1	1	3	3	3	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_13	PF13370.1	gi|124028231|ref|YP_001013551.1|	-	3.2	8.1	14.3	0.89	9.9	1.1	2.8	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
NapD	PF03927.8	gi|124028232|ref|YP_001013552.1|	-	0.006	16.3	0.0	0.0086	15.8	0.0	1.2	1	0	0	1	1	1	1	NapD	protein
Exonuc_VII_S	PF02609.11	gi|124028232|ref|YP_001013552.1|	-	0.031	14.0	0.3	0.13	12.0	0.0	2.0	2	0	0	2	2	2	0	Exonuclease	VII	small	subunit
Acetyltransf_1	PF00583.19	gi|124028233|ref|YP_001013553.1|	-	2.5e-11	43.4	0.0	3e-11	43.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|124028233|ref|YP_001013553.1|	-	6.6e-10	39.0	0.0	7.9e-10	38.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|124028233|ref|YP_001013553.1|	-	9.5e-08	32.1	0.0	1.1e-07	31.9	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|124028233|ref|YP_001013553.1|	-	4.8e-05	23.0	0.3	0.0001	21.9	0.2	1.5	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|124028233|ref|YP_001013553.1|	-	0.00011	22.0	0.0	0.00013	21.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|124028233|ref|YP_001013553.1|	-	0.0084	16.0	0.0	0.014	15.2	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|124028233|ref|YP_001013553.1|	-	0.035	13.9	0.0	0.049	13.5	0.0	1.2	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.1	gi|124028233|ref|YP_001013553.1|	-	0.067	13.3	0.0	0.13	12.3	0.0	1.5	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Peptidase_M55	PF04951.8	gi|124028234|ref|YP_001013554.1|	-	2.2e-95	318.8	0.0	2.6e-95	318.6	0.0	1.0	1	0	0	1	1	1	1	D-aminopeptidase
PUA_2	PF14306.1	gi|124028234|ref|YP_001013554.1|	-	0.084	12.2	0.0	2.3	7.5	0.0	2.3	2	0	0	2	2	2	0	PUA-like	domain
Mycobact_memb	PF05423.8	gi|124028234|ref|YP_001013554.1|	-	0.13	11.9	0.0	0.39	10.4	0.0	1.8	1	1	0	1	1	1	0	Mycobacterium	membrane	protein
ALAD	PF00490.16	gi|124028236|ref|YP_001013556.1|	-	1.8e-141	470.7	0.0	2e-141	470.5	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Se-cys_synth_N	PF12390.3	gi|124028236|ref|YP_001013556.1|	-	0.25	11.4	3.1	1.6	8.8	0.0	3.2	4	0	0	4	4	4	0	Selenocysteine	synthase	N	terminal
OmdA	PF13376.1	gi|124028237|ref|YP_001013557.1|	-	0.32	10.6	1.4	0.55	9.9	0.1	2.2	2	0	0	2	2	2	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
Multi-haem_cyto	PF13447.1	gi|124028238|ref|YP_001013558.1|	-	3.5e-33	114.8	15.0	1.6e-23	83.1	3.8	4.6	5	0	0	5	5	4	3	Seven	times	multi-haem	cytochrome	CxxCH
Cytochrome_C7	PF14522.1	gi|124028238|ref|YP_001013558.1|	-	1.6e-08	34.0	22.8	0.0091	15.6	2.5	5.9	4	1	2	6	6	6	2	Cytochrome	c7
Cytochrom_c3_2	PF14537.1	gi|124028238|ref|YP_001013558.1|	-	5e-06	26.7	21.5	0.052	13.8	1.7	5.7	3	2	1	4	4	4	3	Cytochrome	c3
CENP-F_leu_zip	PF10473.4	gi|124028238|ref|YP_001013558.1|	-	1.9e-05	24.5	13.4	5.8e-05	22.9	8.8	2.0	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Laminin_I	PF06008.9	gi|124028238|ref|YP_001013558.1|	-	2.7e-05	23.6	9.9	5e-05	22.7	6.8	1.3	1	0	0	1	1	1	1	Laminin	Domain	I
Laminin_II	PF06009.7	gi|124028238|ref|YP_001013558.1|	-	3.3e-05	23.6	10.4	5.2e-05	23.0	3.4	2.3	1	1	1	2	2	2	1	Laminin	Domain	II
IncA	PF04156.9	gi|124028238|ref|YP_001013558.1|	-	3.5e-05	23.4	15.0	3.5e-05	23.4	10.4	2.8	2	1	1	3	3	2	1	IncA	protein
Cytochrome_C554	PF13435.1	gi|124028238|ref|YP_001013558.1|	-	5e-05	23.3	18.8	0.11	12.4	1.6	5.1	3	2	1	4	4	4	3	Cytochrome	c554	and	c-prime
FlaC_arch	PF05377.6	gi|124028238|ref|YP_001013558.1|	-	5.8e-05	22.9	3.7	0.051	13.4	0.1	4.0	2	1	0	3	3	3	1	Flagella	accessory	protein	C	(FlaC)
Uds1	PF15456.1	gi|124028238|ref|YP_001013558.1|	-	5.9e-05	23.0	8.4	0.0062	16.5	2.4	2.4	1	1	1	2	2	2	1	Up-regulated	During	Septation
TBPIP	PF07106.8	gi|124028238|ref|YP_001013558.1|	-	9.1e-05	22.0	9.4	0.01	15.4	2.4	2.5	1	1	1	2	2	2	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
WEMBL	PF05701.6	gi|124028238|ref|YP_001013558.1|	-	0.00011	20.7	12.6	0.00019	20.0	8.8	1.2	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
CALCOCO1	PF07888.6	gi|124028238|ref|YP_001013558.1|	-	0.00019	19.8	4.9	0.00028	19.3	3.4	1.1	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
NPV_P10	PF05531.7	gi|124028238|ref|YP_001013558.1|	-	0.00031	20.9	13.5	0.079	13.2	3.9	3.7	1	1	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
Myosin_tail_1	PF01576.14	gi|124028238|ref|YP_001013558.1|	-	0.00033	18.5	8.1	0.00048	18.0	5.6	1.1	1	0	0	1	1	1	1	Myosin	tail
Reo_sigmaC	PF04582.7	gi|124028238|ref|YP_001013558.1|	-	0.00037	19.7	5.5	0.00074	18.7	3.8	1.5	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
ATG16	PF08614.6	gi|124028238|ref|YP_001013558.1|	-	0.0005	19.9	9.5	0.00056	19.7	5.2	1.9	1	1	1	2	2	2	1	Autophagy	protein	16	(ATG16)
Tropomyosin_1	PF12718.2	gi|124028238|ref|YP_001013558.1|	-	0.00072	19.4	10.9	0.00072	19.4	7.5	1.6	2	0	0	2	2	1	1	Tropomyosin	like
TMF_DNA_bd	PF12329.3	gi|124028238|ref|YP_001013558.1|	-	0.00084	19.0	8.5	0.00084	19.0	5.9	3.2	2	1	1	3	3	2	1	TATA	element	modulatory	factor	1	DNA	binding
DUF3584	PF12128.3	gi|124028238|ref|YP_001013558.1|	-	0.0012	16.2	5.0	0.0012	16.2	3.5	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3584)
Baculo_PEP_C	PF04513.7	gi|124028238|ref|YP_001013558.1|	-	0.0018	18.1	13.7	0.041	13.7	1.1	2.9	2	1	1	3	3	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF869	PF05911.6	gi|124028238|ref|YP_001013558.1|	-	0.0018	16.6	6.0	0.0028	15.9	4.2	1.2	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
EzrA	PF06160.7	gi|124028238|ref|YP_001013558.1|	-	0.0022	16.2	5.9	0.0039	15.4	4.1	1.3	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
Paired_CXXCH_1	PF09699.5	gi|124028238|ref|YP_001013558.1|	-	0.0026	17.2	29.6	4.8	6.7	0.0	7.5	7	1	0	7	7	7	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
DUF4201	PF13870.1	gi|124028238|ref|YP_001013558.1|	-	0.0026	17.2	3.1	0.0054	16.1	2.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4201)
TPR_MLP1_2	PF07926.7	gi|124028238|ref|YP_001013558.1|	-	0.003	17.2	5.8	0.003	17.2	4.0	2.5	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
Lectin_N	PF03954.9	gi|124028238|ref|YP_001013558.1|	-	0.0035	16.7	3.5	0.0035	16.7	2.4	1.9	1	1	1	2	2	1	1	Hepatic	lectin,	N-terminal	domain
MbeD_MobD	PF04899.7	gi|124028238|ref|YP_001013558.1|	-	0.0041	16.9	10.8	0.069	13.0	0.7	3.4	2	1	2	4	4	2	1	MbeD/MobD	like
DUF812	PF05667.6	gi|124028238|ref|YP_001013558.1|	-	0.0045	15.5	10.6	0.012	14.1	7.4	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
APG6	PF04111.7	gi|124028238|ref|YP_001013558.1|	-	0.0047	16.0	3.2	0.0047	16.0	2.2	1.6	1	1	1	2	2	2	2	Autophagy	protein	Apg6
PspA_IM30	PF04012.7	gi|124028238|ref|YP_001013558.1|	-	0.005	16.2	19.4	0.027	13.8	5.7	2.5	1	1	1	2	2	2	1	PspA/IM30	family
Seryl_tRNA_N	PF02403.17	gi|124028238|ref|YP_001013558.1|	-	0.0053	16.7	14.7	0.067	13.2	2.5	3.1	1	1	2	3	3	3	1	Seryl-tRNA	synthetase	N-terminal	domain
CCDC155	PF14662.1	gi|124028238|ref|YP_001013558.1|	-	0.0054	16.3	12.2	0.0099	15.4	8.5	1.4	1	0	0	1	1	1	1	Coiled-coil	region	of	CCDC155
DHC_N2	PF08393.8	gi|124028238|ref|YP_001013558.1|	-	0.0059	15.1	0.8	0.012	14.2	0.6	1.4	1	0	0	1	1	1	1	Dynein	heavy	chain,	N-terminal	region	2
DUF342	PF03961.8	gi|124028238|ref|YP_001013558.1|	-	0.0066	14.9	9.8	0.053	11.9	0.3	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF342)
GAS	PF13851.1	gi|124028238|ref|YP_001013558.1|	-	0.0068	15.6	8.4	0.027	13.6	5.8	1.9	1	1	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Mod_r	PF07200.8	gi|124028238|ref|YP_001013558.1|	-	0.0073	16.2	10.3	0.15	11.9	1.7	2.4	1	1	1	2	2	2	1	Modifier	of	rudimentary	(Mod(r))	protein
DUF2968	PF11180.3	gi|124028238|ref|YP_001013558.1|	-	0.0085	15.4	7.0	0.0085	15.4	4.9	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2968)
Lebercilin	PF15619.1	gi|124028238|ref|YP_001013558.1|	-	0.009	15.4	8.4	0.018	14.4	5.8	1.4	1	0	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Spc7	PF08317.6	gi|124028238|ref|YP_001013558.1|	-	0.01	14.5	12.6	0.0098	14.5	4.9	2.0	1	1	1	2	2	2	2	Spc7	kinetochore	protein
HOOK	PF05622.7	gi|124028238|ref|YP_001013558.1|	-	0.01	13.7	8.0	0.014	13.2	5.6	1.1	1	0	0	1	1	1	1	HOOK	protein
TMF_TATA_bd	PF12325.3	gi|124028238|ref|YP_001013558.1|	-	0.011	15.4	3.3	0.011	15.4	2.3	3.1	2	1	1	3	3	2	0	TATA	element	modulatory	factor	1	TATA	binding
Sec34	PF04136.10	gi|124028238|ref|YP_001013558.1|	-	0.012	15.3	6.0	0.028	14.1	0.6	2.5	1	1	1	2	2	2	0	Sec34-like	family
Phage_GP20	PF06810.6	gi|124028238|ref|YP_001013558.1|	-	0.013	14.9	12.6	0.066	12.6	3.2	2.4	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
Bap31	PF05529.7	gi|124028238|ref|YP_001013558.1|	-	0.016	14.6	0.6	0.016	14.6	0.4	2.5	2	1	0	2	2	2	0	B-cell	receptor-associated	protein	31-like
DivIC	PF04977.10	gi|124028238|ref|YP_001013558.1|	-	0.017	14.5	11.9	0.022	14.2	2.4	3.0	1	1	1	2	2	2	0	Septum	formation	initiator
FUSC	PF04632.7	gi|124028238|ref|YP_001013558.1|	-	0.018	13.5	5.9	0.037	12.4	4.1	1.4	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
CENP-Q	PF13094.1	gi|124028238|ref|YP_001013558.1|	-	0.019	14.9	10.6	0.043	13.8	7.3	1.6	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
THOC7	PF05615.8	gi|124028238|ref|YP_001013558.1|	-	0.021	15.0	6.1	0.034	14.4	3.7	1.7	1	1	0	1	1	1	0	Tho	complex	subunit	7
AAA_27	PF13514.1	gi|124028238|ref|YP_001013558.1|	-	0.022	12.4	10.1	0.033	11.8	7.0	1.2	1	0	0	1	1	1	0	AAA	domain
DUF3251	PF11622.3	gi|124028238|ref|YP_001013558.1|	-	0.023	14.1	10.8	0.37	10.1	2.4	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3251)
LPP	PF04728.8	gi|124028238|ref|YP_001013558.1|	-	0.024	14.4	11.3	1.6	8.6	0.6	4.4	3	1	1	5	5	4	0	Lipoprotein	leucine-zipper
MscS_porin	PF12795.2	gi|124028238|ref|YP_001013558.1|	-	0.024	13.9	20.4	0.048	12.9	14.2	1.4	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
AAA_13	PF13166.1	gi|124028238|ref|YP_001013558.1|	-	0.024	13.0	10.0	0.026	12.9	1.1	1.8	1	1	1	2	2	2	0	AAA	domain
Filament	PF00038.16	gi|124028238|ref|YP_001013558.1|	-	0.025	14.0	9.0	0.25	10.7	6.3	2.3	1	1	0	1	1	1	0	Intermediate	filament	protein
DUF1664	PF07889.7	gi|124028238|ref|YP_001013558.1|	-	0.025	14.3	6.4	1.7	8.4	0.1	2.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF972	PF06156.8	gi|124028238|ref|YP_001013558.1|	-	0.025	14.8	8.4	1.1	9.6	1.3	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF641	PF04859.7	gi|124028238|ref|YP_001013558.1|	-	0.028	14.1	0.6	0.028	14.1	0.4	2.4	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
T4SS	PF07996.6	gi|124028238|ref|YP_001013558.1|	-	0.028	14.2	12.6	0.09	12.6	8.7	1.9	1	1	0	1	1	1	0	Type	IV	secretion	system	proteins
Syntaxin-6_N	PF09177.6	gi|124028238|ref|YP_001013558.1|	-	0.03	14.7	11.0	1	9.7	0.2	3.4	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
GrpE	PF01025.14	gi|124028238|ref|YP_001013558.1|	-	0.031	13.8	4.6	0.079	12.4	3.2	1.7	1	0	0	1	1	1	0	GrpE
HCMV_UL139	PF12507.3	gi|124028238|ref|YP_001013558.1|	-	0.031	14.4	0.3	0.077	13.1	0.1	1.8	1	1	0	1	1	1	0	Human	Cytomegalovirus	UL139	protein
ADIP	PF11559.3	gi|124028238|ref|YP_001013558.1|	-	0.032	14.1	11.0	0.018	14.9	2.8	2.2	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
WXG100	PF06013.7	gi|124028238|ref|YP_001013558.1|	-	0.032	14.2	10.2	0.064	13.2	1.8	3.3	1	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
BLOC1_2	PF10046.4	gi|124028238|ref|YP_001013558.1|	-	0.043	13.9	12.8	2.4	8.3	0.5	3.5	1	1	3	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Syntaxin	PF00804.20	gi|124028238|ref|YP_001013558.1|	-	0.047	13.8	10.8	0.65	10.1	0.5	3.3	2	1	1	3	3	2	0	Syntaxin
DUF4407	PF14362.1	gi|124028238|ref|YP_001013558.1|	-	0.048	12.6	8.3	0.082	11.8	5.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Herpes_U30	PF04523.8	gi|124028238|ref|YP_001013558.1|	-	0.067	10.6	2.8	0.1	10.0	2.0	1.2	1	0	0	1	1	1	0	Herpes	virus	tegument	protein	U30
SlyX	PF04102.7	gi|124028238|ref|YP_001013558.1|	-	0.068	13.5	15.1	0.24	11.7	0.6	3.6	1	1	2	3	3	3	0	SlyX
Fib_alpha	PF08702.5	gi|124028238|ref|YP_001013558.1|	-	0.072	13.2	8.3	1.6	8.8	1.5	2.4	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
PilJ	PF13675.1	gi|124028238|ref|YP_001013558.1|	-	0.074	13.3	9.6	12	6.2	6.6	2.6	1	1	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Mnd1	PF03962.10	gi|124028238|ref|YP_001013558.1|	-	0.075	12.6	8.0	0.65	9.6	5.4	2.2	1	1	1	2	2	2	0	Mnd1	family
UBN2	PF14223.1	gi|124028238|ref|YP_001013558.1|	-	0.085	12.6	1.0	0.33	10.7	0.2	2.2	2	0	0	2	2	1	0	gag-polypeptide	of	LTR	copia-type
DUF2937	PF11157.3	gi|124028238|ref|YP_001013558.1|	-	0.096	12.0	9.7	1.6	8.0	0.1	3.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2937)
DUF4349	PF14257.1	gi|124028238|ref|YP_001013558.1|	-	0.099	11.8	8.4	0.77	8.9	0.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
Tropomyosin	PF00261.15	gi|124028238|ref|YP_001013558.1|	-	0.11	11.6	9.4	0.32	10.0	6.4	1.8	1	1	0	1	1	1	0	Tropomyosin
Atg14	PF10186.4	gi|124028238|ref|YP_001013558.1|	-	0.11	11.4	11.5	0.36	9.7	2.5	2.5	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IFT57	PF10498.4	gi|124028238|ref|YP_001013558.1|	-	0.13	10.9	8.1	1	8.0	5.8	1.8	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
DUF2730	PF10805.3	gi|124028238|ref|YP_001013558.1|	-	0.14	11.9	6.5	2.2	8.0	0.3	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2730)
Spectrin	PF00435.16	gi|124028238|ref|YP_001013558.1|	-	0.14	12.4	12.6	1.3	9.3	2.5	3.0	1	1	1	2	2	2	0	Spectrin	repeat
Allexi_40kDa	PF05549.6	gi|124028238|ref|YP_001013558.1|	-	0.15	11.3	6.1	0.85	8.8	1.9	2.2	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
CorA	PF01544.13	gi|124028238|ref|YP_001013558.1|	-	0.15	11.0	1.5	0.3	10.0	0.5	1.7	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
PLU-1	PF08429.6	gi|124028238|ref|YP_001013558.1|	-	0.16	10.8	12.5	0.54	9.0	2.7	2.5	1	1	1	2	2	2	0	PLU-1-like	protein
MutS_IV	PF05190.13	gi|124028238|ref|YP_001013558.1|	-	0.16	12.1	1.1	1.1	9.4	0.1	2.7	1	1	1	2	2	2	0	MutS	family	domain	IV
Rootletin	PF15035.1	gi|124028238|ref|YP_001013558.1|	-	0.17	11.8	4.4	0.32	10.9	3.1	1.5	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Syntaxin_2	PF14523.1	gi|124028238|ref|YP_001013558.1|	-	0.18	11.8	6.9	0.31	11.0	1.6	2.5	1	1	1	2	2	2	0	Syntaxin-like	protein
Cortex-I_coil	PF09304.5	gi|124028238|ref|YP_001013558.1|	-	0.18	11.8	11.5	0.083	12.9	3.3	2.6	1	1	1	2	2	2	0	Cortexillin	I,	coiled	coil
Med9	PF07544.8	gi|124028238|ref|YP_001013558.1|	-	0.22	11.2	3.9	0.94	9.2	0.5	2.6	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
YPEB	PF14620.1	gi|124028238|ref|YP_001013558.1|	-	0.24	10.3	4.6	0.46	9.4	3.2	1.4	1	0	0	1	1	1	0	YpeB	sporulation
DUF4200	PF13863.1	gi|124028238|ref|YP_001013558.1|	-	0.25	11.2	13.0	0.61	10.0	1.2	3.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
MAD	PF05557.8	gi|124028238|ref|YP_001013558.1|	-	0.26	9.3	10.1	0.13	10.3	2.5	1.9	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
DUF724	PF05266.9	gi|124028238|ref|YP_001013558.1|	-	0.29	10.7	8.3	0.58	9.7	0.2	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
Dor1	PF04124.7	gi|124028238|ref|YP_001013558.1|	-	0.29	9.5	8.9	0.18	10.2	1.9	2.0	1	1	1	2	2	2	0	Dor1-like	family
Ax_dynein_light	PF10211.4	gi|124028238|ref|YP_001013558.1|	-	0.29	10.9	5.3	0.75	9.5	0.2	2.4	1	1	2	3	3	3	0	Axonemal	dynein	light	chain
Nup54	PF13874.1	gi|124028238|ref|YP_001013558.1|	-	0.32	10.6	7.4	0.78	9.3	3.2	2.4	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
DivIVA	PF05103.8	gi|124028238|ref|YP_001013558.1|	-	0.34	10.9	12.2	3.8	7.5	3.4	2.5	1	1	1	2	2	2	0	DivIVA	protein
TSC22	PF01166.13	gi|124028238|ref|YP_001013558.1|	-	0.38	10.7	7.5	1.7	8.6	0.0	3.7	3	1	1	4	4	2	0	TSC-22/dip/bun	family
HALZ	PF02183.13	gi|124028238|ref|YP_001013558.1|	-	0.38	10.4	13.1	0.24	11.1	0.8	3.2	3	0	0	3	3	2	0	Homeobox	associated	leucine	zipper
DUF3373	PF11853.3	gi|124028238|ref|YP_001013558.1|	-	0.39	9.1	16.6	0.13	10.7	1.4	3.0	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3373)
Prominin	PF05478.6	gi|124028238|ref|YP_001013558.1|	-	0.41	8.1	3.0	0.66	7.4	2.1	1.2	1	0	0	1	1	1	0	Prominin
zf-C2H2_3	PF13878.1	gi|124028238|ref|YP_001013558.1|	-	0.46	10.0	9.0	13	5.4	0.1	4.5	4	0	0	4	4	3	0	zinc-finger	of	acetyl-transferase	ESCO
V_ATPase_I	PF01496.14	gi|124028238|ref|YP_001013558.1|	-	0.53	8.0	4.8	1.2	6.9	3.3	1.5	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FlxA	PF14282.1	gi|124028238|ref|YP_001013558.1|	-	0.57	10.1	25.6	0.48	10.4	3.5	3.2	1	1	2	3	3	3	0	FlxA-like	protein
FH2	PF02181.18	gi|124028238|ref|YP_001013558.1|	-	0.57	8.9	6.2	0.63	8.8	1.4	2.2	1	1	1	2	2	2	0	Formin	Homology	2	Domain
DUF4618	PF15397.1	gi|124028238|ref|YP_001013558.1|	-	0.6	9.4	7.4	0.33	10.2	0.6	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
DUF4559	PF15112.1	gi|124028238|ref|YP_001013558.1|	-	0.6	9.2	2.6	1.3	8.1	1.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
HlyD	PF00529.15	gi|124028238|ref|YP_001013558.1|	-	0.63	9.3	16.4	1.2	8.3	11.4	1.5	1	0	0	1	1	1	0	HlyD	family	secretion	protein
Bacillus_HBL	PF05791.6	gi|124028238|ref|YP_001013558.1|	-	0.65	9.3	11.7	3	7.1	0.5	2.8	2	1	1	3	3	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
End3	PF12761.2	gi|124028238|ref|YP_001013558.1|	-	0.75	9.4	5.3	1.3	8.5	3.7	1.4	1	0	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
HrpB7	PF09486.5	gi|124028238|ref|YP_001013558.1|	-	0.9	9.4	9.6	0.83	9.5	2.4	2.4	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
bZIP_1	PF00170.16	gi|124028238|ref|YP_001013558.1|	-	0.9	9.5	10.2	0.18	11.7	0.7	3.3	1	1	1	3	3	2	0	bZIP	transcription	factor
MCPsignal	PF00015.16	gi|124028238|ref|YP_001013558.1|	-	0.91	9.0	9.7	0.43	10.0	0.2	2.4	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
STAT_alpha	PF01017.15	gi|124028238|ref|YP_001013558.1|	-	0.93	9.1	9.3	0.12	12.0	2.0	2.1	1	1	1	2	2	2	0	STAT	protein,	all-alpha	domain
NTR2	PF15458.1	gi|124028238|ref|YP_001013558.1|	-	0.95	8.6	10.6	74	2.4	6.9	2.4	1	1	0	1	1	1	0	Nineteen	complex-related	protein	2
Fmp27_WPPW	PF10359.4	gi|124028238|ref|YP_001013558.1|	-	0.97	7.7	5.7	4.4	5.5	0.1	2.0	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
HAUS6_N	PF14661.1	gi|124028238|ref|YP_001013558.1|	-	1	8.6	4.2	1.8	7.8	2.9	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
DASH_Hsk3	PF08227.6	gi|124028238|ref|YP_001013558.1|	-	1	9.5	10.4	7.8	6.7	2.6	3.2	1	1	2	3	3	2	0	DASH	complex	subunit	Hsk3	like
Cep57_MT_bd	PF06657.8	gi|124028238|ref|YP_001013558.1|	-	1.1	9.1	9.8	0.92	9.5	3.5	2.8	1	1	2	3	3	2	0	Centrosome	microtubule-binding	domain	of	Cep57
Occludin_ELL	PF07303.8	gi|124028238|ref|YP_001013558.1|	-	1.2	9.8	4.6	36	5.1	0.4	3.2	1	1	1	2	2	2	0	Occludin	homology	domain
FliD_C	PF07195.7	gi|124028238|ref|YP_001013558.1|	-	1.3	8.2	8.6	11	5.1	5.7	2.0	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
NapB	PF03892.9	gi|124028238|ref|YP_001013558.1|	-	1.3	8.6	0.0	1.3	8.6	0.0	5.2	5	2	2	7	7	3	0	Nitrate	reductase	cytochrome	c-type	subunit	(NapB)
Prefoldin_2	PF01920.15	gi|124028238|ref|YP_001013558.1|	-	1.4	8.7	19.7	0.032	13.9	1.5	3.5	2	1	1	4	4	3	0	Prefoldin	subunit
DUF4164	PF13747.1	gi|124028238|ref|YP_001013558.1|	-	1.4	9.0	12.1	3.4	7.8	2.6	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Prefoldin	PF02996.12	gi|124028238|ref|YP_001013558.1|	-	1.6	8.3	14.1	1.9	8.1	1.0	3.5	1	1	1	3	3	3	0	Prefoldin	subunit
Tnp_P_element	PF12017.3	gi|124028238|ref|YP_001013558.1|	-	1.6	7.8	6.1	20	4.2	0.0	3.4	2	1	1	3	3	3	0	Transposase	protein
YlqD	PF11068.3	gi|124028238|ref|YP_001013558.1|	-	1.7	8.6	10.3	4.7	7.2	2.5	2.5	1	1	1	2	2	2	0	YlqD	protein
DUF4140	PF13600.1	gi|124028238|ref|YP_001013558.1|	-	1.8	9.0	18.3	0.027	14.9	2.2	3.5	3	1	0	3	3	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Cytochrom_NNT	PF03264.9	gi|124028238|ref|YP_001013558.1|	-	1.9	7.9	23.4	1.5	8.2	1.7	5.9	3	2	3	6	6	4	0	NapC/NirT	cytochrome	c	family,	N-terminal	region
Rho_Binding	PF08912.6	gi|124028238|ref|YP_001013558.1|	-	2.2	8.6	7.9	5.9	7.2	0.6	2.8	1	1	1	2	2	2	0	Rho	Binding
Not3	PF04065.10	gi|124028238|ref|YP_001013558.1|	-	2.3	7.4	5.4	8.7	5.5	1.4	2.3	1	1	1	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF3585	PF12130.3	gi|124028238|ref|YP_001013558.1|	-	2.4	7.9	7.7	6.5	6.5	5.4	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3585)
Striatin	PF08232.7	gi|124028238|ref|YP_001013558.1|	-	2.7	8.3	8.4	29	4.9	5.8	2.3	1	1	0	1	1	1	0	Striatin	family
Macoilin	PF09726.4	gi|124028238|ref|YP_001013558.1|	-	2.8	6.1	7.5	4.1	5.5	5.2	1.1	1	0	0	1	1	1	0	Transmembrane	protein
BRE1	PF08647.6	gi|124028238|ref|YP_001013558.1|	-	2.9	7.9	11.6	0.4	10.6	4.5	2.3	2	1	1	3	3	2	0	BRE1	E3	ubiquitin	ligase
Viral_P18	PF04521.8	gi|124028238|ref|YP_001013558.1|	-	2.9	7.3	8.6	2	7.8	0.7	2.6	1	1	1	2	2	2	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
COG2	PF06148.6	gi|124028238|ref|YP_001013558.1|	-	3.8	7.3	7.8	1.6e+02	2.1	5.4	2.6	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3829	PF12889.2	gi|124028238|ref|YP_001013558.1|	-	3.8	6.6	10.0	7.3	5.6	0.8	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3829)
Spc24	PF08286.6	gi|124028238|ref|YP_001013558.1|	-	3.9	7.1	10.7	3.1	7.5	0.8	2.8	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
DUF3573	PF12097.3	gi|124028238|ref|YP_001013558.1|	-	3.9	5.9	6.5	6	5.3	0.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3573)
DUF904	PF06005.7	gi|124028238|ref|YP_001013558.1|	-	4.1	7.7	14.6	5.9e+02	0.8	10.1	3.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
HR1	PF02185.11	gi|124028238|ref|YP_001013558.1|	-	4.7	7.0	15.4	0.57	9.9	0.9	4.1	3	1	1	4	4	4	0	Hr1	repeat
DUF2408	PF10303.4	gi|124028238|ref|YP_001013558.1|	-	5.2	7.1	7.1	14	5.7	1.6	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2408)
DUF4404	PF14357.1	gi|124028238|ref|YP_001013558.1|	-	5.7	7.4	12.7	20	5.6	0.6	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
FliJ	PF02050.11	gi|124028238|ref|YP_001013558.1|	-	5.9	6.9	14.2	8	6.5	2.2	2.5	1	1	2	3	3	3	0	Flagellar	FliJ	protein
LUC7	PF03194.10	gi|124028238|ref|YP_001013558.1|	-	6.8	6.1	7.0	31	3.9	4.9	2.1	1	1	0	1	1	1	0	LUC7	N_terminus
HisKA_3	PF07730.8	gi|124028238|ref|YP_001013558.1|	-	7.2	7.0	11.0	0.37	11.1	0.7	3.1	2	1	1	3	3	2	0	Histidine	kinase
Cep57_CLD_2	PF14197.1	gi|124028238|ref|YP_001013558.1|	-	7.7	6.5	10.1	22	5.0	3.7	3.2	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
DUF607	PF04678.8	gi|124028238|ref|YP_001013558.1|	-	7.7	6.3	7.0	28	4.5	0.6	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF607
EAP30	PF04157.11	gi|124028238|ref|YP_001013558.1|	-	8.4	5.4	12.6	18	4.3	3.6	3.2	2	1	1	3	3	3	0	EAP30/Vps36	family
Phasin	PF05597.6	gi|124028238|ref|YP_001013558.1|	-	8.6	6.1	11.8	13	5.5	0.3	3.9	1	1	1	4	4	3	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF948	PF06103.6	gi|124028238|ref|YP_001013558.1|	-	8.9	6.2	16.4	0.95	9.3	2.1	3.7	1	1	3	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Microtub_assoc	PF07989.6	gi|124028238|ref|YP_001013558.1|	-	9.2	6.1	7.2	27	4.6	0.7	2.7	1	1	1	2	2	2	0	Microtubule	associated
Surfac_D-trimer	PF09006.6	gi|124028238|ref|YP_001013558.1|	-	9.7	6.0	7.6	5.7	6.7	0.2	3.4	3	0	0	3	3	2	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
ERM	PF00769.14	gi|124028238|ref|YP_001013558.1|	-	9.8	5.6	11.1	9.1	5.7	6.6	1.7	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
Wbp11	PF09429.5	gi|124028238|ref|YP_001013558.1|	-	9.9	6.2	9.1	17	5.4	0.3	3.2	2	2	2	4	4	3	0	WW	domain	binding	protein	11
Peptidase_MA_2	PF13485.1	gi|124028239|ref|YP_001013559.1|	-	0.012	15.6	1.6	0.022	14.7	1.1	1.4	1	0	0	1	1	1	0	Peptidase	MA	superfamily
DAP10	PF07213.6	gi|124028239|ref|YP_001013559.1|	-	0.067	12.9	0.1	0.27	11.0	0.1	2.0	1	0	0	1	1	1	0	DAP10	membrane	protein
Cytochrome_C7	PF14522.1	gi|124028240|ref|YP_001013560.1|	-	1.2e-06	28.0	5.8	0.00034	20.1	1.3	3.1	2	1	1	3	3	3	3	Cytochrome	c7
Cytochrom_NNT	PF03264.9	gi|124028240|ref|YP_001013560.1|	-	0.00016	21.1	10.9	0.2	11.0	0.2	3.2	2	1	1	3	3	3	3	NapC/NirT	cytochrome	c	family,	N-terminal	region
Multi-haem_cyto	PF13447.1	gi|124028240|ref|YP_001013560.1|	-	0.0029	16.7	3.3	0.015	14.3	1.5	2.3	2	1	0	2	2	2	1	Seven	times	multi-haem	cytochrome	CxxCH
Cytochrom_c3_2	PF14537.1	gi|124028240|ref|YP_001013560.1|	-	0.015	15.6	11.6	0.72	10.2	3.2	3.2	1	1	1	2	2	2	0	Cytochrome	c3
Paired_CXXCH_1	PF09699.5	gi|124028240|ref|YP_001013560.1|	-	0.021	14.3	19.5	0.068	12.6	0.3	3.9	2	1	1	3	3	3	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
Cytochrome_C554	PF13435.1	gi|124028240|ref|YP_001013560.1|	-	0.063	13.3	10.4	0.25	11.3	2.1	2.8	1	1	1	2	2	2	0	Cytochrome	c554	and	c-prime
CCP_MauG	PF03150.9	gi|124028240|ref|YP_001013560.1|	-	0.18	12.0	5.8	7.1	6.9	0.6	3.2	2	1	0	3	3	3	0	Di-haem	cytochrome	c	peroxidase
Cytochrom_CIII	PF02085.11	gi|124028240|ref|YP_001013560.1|	-	0.89	9.6	10.8	11	6.2	3.1	3.1	1	1	1	2	2	2	0	Class	III	cytochrome	C	family
zf-CHY	PF05495.7	gi|124028240|ref|YP_001013560.1|	-	0.89	9.7	12.4	3.8	7.7	4.1	3.4	2	1	0	2	2	2	0	CHY	zinc	finger
Cytochrome_CBB3	PF13442.1	gi|124028240|ref|YP_001013560.1|	-	3.1	8.0	10.5	48	4.2	0.3	4.1	2	1	2	4	4	4	0	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
Fer4_2	PF12797.2	gi|124028241|ref|YP_001013561.1|	-	0.00013	21.6	2.7	0.00013	21.6	1.9	2.0	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124028241|ref|YP_001013561.1|	-	0.00078	19.2	0.5	0.00078	19.2	0.3	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028241|ref|YP_001013561.1|	-	0.0015	18.7	1.0	0.0015	18.7	0.7	2.0	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124028241|ref|YP_001013561.1|	-	0.0038	17.0	3.5	0.0038	17.0	2.4	1.8	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|124028241|ref|YP_001013561.1|	-	0.0044	16.5	3.8	0.01	15.4	2.6	1.6	1	0	0	1	1	1	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124028241|ref|YP_001013561.1|	-	0.0058	16.4	1.0	0.0058	16.4	0.7	1.6	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
UCR_Fe-S_N	PF10399.4	gi|124028241|ref|YP_001013561.1|	-	0.0085	15.2	0.1	0.015	14.4	0.1	1.3	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Fer4_8	PF13183.1	gi|124028241|ref|YP_001013561.1|	-	0.025	14.5	2.2	0.025	14.5	1.5	1.9	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124028241|ref|YP_001013561.1|	-	0.034	14.4	3.6	0.034	14.4	2.5	2.2	2	1	0	2	2	1	0	4Fe-4S	binding	domain
TAT_signal	PF10518.4	gi|124028241|ref|YP_001013561.1|	-	0.044	13.8	0.2	0.092	12.7	0.2	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF2315	PF10231.4	gi|124028241|ref|YP_001013561.1|	-	0.15	11.9	0.1	0.24	11.2	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2315)
Fer4_7	PF12838.2	gi|124028241|ref|YP_001013561.1|	-	0.31	11.4	8.8	0.075	13.4	2.3	1.9	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|124028241|ref|YP_001013561.1|	-	0.67	10.3	10.0	1.6	9.1	6.9	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124028241|ref|YP_001013561.1|	-	0.92	9.9	13.4	13	6.2	9.4	2.2	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|124028241|ref|YP_001013561.1|	-	4.3	8.1	7.5	3.2	8.5	3.6	2.1	2	0	0	2	2	1	0	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|124028242|ref|YP_001013562.1|	-	8.8e-15	54.4	1.9	2e-08	34.0	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028242|ref|YP_001013562.1|	-	1.1e-12	47.9	6.4	1.7e-12	47.3	4.4	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124028242|ref|YP_001013562.1|	-	1.4e-11	44.5	7.4	2.3e-11	43.9	5.1	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124028242|ref|YP_001013562.1|	-	4e-10	38.8	16.8	8.2e-09	34.7	1.7	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|124028242|ref|YP_001013562.1|	-	2.6e-08	34.0	1.1	2.7e-05	24.4	1.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124028242|ref|YP_001013562.1|	-	3.7e-08	33.0	7.3	9e-08	31.8	5.1	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|124028242|ref|YP_001013562.1|	-	1.8e-07	31.1	14.7	0.0015	18.9	1.5	2.5	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|124028242|ref|YP_001013562.1|	-	2.2e-07	30.3	15.1	1.3e-06	27.9	2.2	2.8	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124028242|ref|YP_001013562.1|	-	2.8e-06	26.9	4.4	2.8e-06	26.9	3.1	2.7	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|124028242|ref|YP_001013562.1|	-	9.1e-05	22.4	3.0	9.1e-05	22.4	2.1	2.6	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|124028242|ref|YP_001013562.1|	-	0.00024	21.8	7.0	0.00069	20.3	4.9	1.8	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.1	gi|124028242|ref|YP_001013562.1|	-	0.00029	20.8	10.1	0.0013	18.7	7.0	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124028242|ref|YP_001013562.1|	-	0.0044	17.5	0.3	0.0044	17.5	0.2	2.2	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.1	gi|124028242|ref|YP_001013562.1|	-	0.023	14.5	13.8	1.2	9.0	9.6	2.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124028242|ref|YP_001013562.1|	-	0.07	13.5	2.9	0.07	13.5	2.0	2.5	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|124028242|ref|YP_001013562.1|	-	0.15	11.7	3.4	1.6	8.3	0.4	2.1	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_13	PF13370.1	gi|124028242|ref|YP_001013562.1|	-	1.8	9.0	8.7	0.15	12.4	1.5	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
NrfD	PF03916.9	gi|124028243|ref|YP_001013563.1|	-	2.1e-36	125.9	27.2	4.2e-36	124.9	18.8	1.5	1	0	0	1	1	1	1	Polysulphide	reductase,	NrfD
Cytochrome_CBB3	PF13442.1	gi|124028244|ref|YP_001013564.1|	-	0.0036	17.4	0.1	0.0073	16.4	0.0	1.6	1	1	0	1	1	1	1	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
Cytochrom_C	PF00034.16	gi|124028244|ref|YP_001013564.1|	-	0.062	14.1	0.3	0.091	13.6	0.2	1.6	1	1	0	1	1	1	0	Cytochrome	c
DUF1628	PF07790.6	gi|124028244|ref|YP_001013564.1|	-	3.3	8.5	6.5	1.2	9.8	0.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
Radical_SAM	PF04055.16	gi|124028245|ref|YP_001013565.1|	-	6e-09	36.2	0.0	1.5e-08	35.0	0.0	1.7	1	0	0	1	1	1	1	Radical	SAM	superfamily
Methyltransf_26	PF13659.1	gi|124028245|ref|YP_001013565.1|	-	0.00042	20.3	0.3	0.0015	18.5	0.1	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
DUF1848	PF08902.6	gi|124028245|ref|YP_001013565.1|	-	0.11	12.0	2.1	6.1	6.2	3.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1848)
Fucose_iso_C	PF02952.12	gi|124028246|ref|YP_001013566.1|	-	1.5e-20	73.1	0.0	2.6e-20	72.3	0.0	1.4	1	0	0	1	1	1	1	L-fucose	isomerase,	C-terminal	domain
DUF3375	PF11855.3	gi|124028246|ref|YP_001013566.1|	-	0.081	11.6	0.3	0.14	10.8	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3375)
MobB	PF03205.9	gi|124028247|ref|YP_001013567.1|	-	0.00039	20.1	0.0	0.0011	18.7	0.0	1.8	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
LpxK	PF02606.9	gi|124028247|ref|YP_001013567.1|	-	0.0025	16.8	0.1	0.0044	16.0	0.1	1.4	1	0	0	1	1	1	1	Tetraacyldisaccharide-1-P	4'-kinase
CbiA	PF01656.18	gi|124028247|ref|YP_001013567.1|	-	0.0034	16.8	0.7	0.048	13.0	0.5	2.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.1	gi|124028247|ref|YP_001013567.1|	-	0.0095	16.7	0.0	0.028	15.2	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
DUF87	PF01935.12	gi|124028247|ref|YP_001013567.1|	-	0.024	14.4	0.0	0.085	12.6	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
Thymidylate_kin	PF02223.12	gi|124028247|ref|YP_001013567.1|	-	0.036	13.4	0.0	0.067	12.5	0.0	1.4	1	0	0	1	1	1	0	Thymidylate	kinase
AAA_26	PF13500.1	gi|124028247|ref|YP_001013567.1|	-	0.04	13.5	0.0	0.094	12.3	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|124028247|ref|YP_001013567.1|	-	0.052	12.6	0.0	0.092	11.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
PRK	PF00485.13	gi|124028247|ref|YP_001013567.1|	-	0.057	12.9	0.0	0.12	11.8	0.0	1.6	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
eIF-1a	PF01176.14	gi|124028248|ref|YP_001013568.1|	-	2.6e-17	61.9	0.1	3.1e-17	61.7	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
HTH_17	PF12728.2	gi|124028248|ref|YP_001013568.1|	-	0.14	12.3	0.4	0.28	11.4	0.2	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
Gly-zipper_YMGG	PF13441.1	gi|124028249|ref|YP_001013569.1|	-	0.2	11.2	8.3	0.43	10.1	5.8	1.5	1	0	0	1	1	1	0	YMGG-like	Gly-zipper
Gly-zipper_OmpA	PF13436.1	gi|124028249|ref|YP_001013569.1|	-	1.4	8.5	4.1	3	7.5	2.8	1.5	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
MFS_1	PF07690.11	gi|124028250|ref|YP_001013571.1|	-	1.3e-22	80.0	43.4	1.3e-22	80.0	30.0	1.6	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
NTP_transf_2	PF01909.18	gi|124028252|ref|YP_001013572.1|	-	4.5e-08	33.3	0.0	6e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Glyco_trans_1_4	PF13692.1	gi|124028252|ref|YP_001013572.1|	-	0.00097	19.2	0.1	0.2	11.7	0.0	2.1	1	1	1	2	2	2	2	Glycosyl	transferases	group	1
DNA_pol_B_palm	PF14792.1	gi|124028252|ref|YP_001013572.1|	-	0.031	14.3	0.0	0.04	13.9	0.0	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
7TM_GPCR_Srt	PF10321.4	gi|124028252|ref|YP_001013572.1|	-	0.12	11.1	0.0	0.15	10.8	0.0	1.1	1	0	0	1	1	1	0	Serpentine	type	7TM	GPCR	chemoreceptor	Srt
RIO1	PF01163.17	gi|124028253|ref|YP_001013573.1|	-	4.7e-61	205.4	0.0	5.9e-61	205.1	0.0	1.1	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|124028253|ref|YP_001013573.1|	-	5.5e-07	29.5	0.5	0.0017	18.1	0.0	2.9	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|124028253|ref|YP_001013573.1|	-	0.001	18.1	0.1	0.0035	16.4	0.1	1.7	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
ABC1	PF03109.11	gi|124028253|ref|YP_001013573.1|	-	0.049	13.6	0.1	6.8	6.6	0.0	2.4	2	0	0	2	2	2	0	ABC1	family
KH_1	PF00013.24	gi|124028254|ref|YP_001013574.1|	-	2.5e-15	55.8	5.8	9e-08	31.6	0.9	2.3	2	0	0	2	2	2	2	KH	domain
KH_3	PF13014.1	gi|124028254|ref|YP_001013574.1|	-	5e-09	35.5	3.1	0.00043	19.8	0.3	2.4	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.12	gi|124028254|ref|YP_001013574.1|	-	0.025	14.1	4.7	0.58	9.7	0.2	2.5	2	0	0	2	2	2	0	KH	domain
Pyrophosphatase	PF00719.14	gi|124028254|ref|YP_001013574.1|	-	0.026	13.9	0.4	0.058	12.8	0.1	1.7	1	1	1	2	2	2	0	Inorganic	pyrophosphatase
KH_4	PF13083.1	gi|124028254|ref|YP_001013574.1|	-	0.99	9.0	3.5	23	4.7	0.1	2.7	2	1	0	2	2	2	0	KH	domain
Lactamase_B_2	PF12706.2	gi|124028257|ref|YP_001013577.1|	-	1.9e-08	34.0	0.0	3.2e-08	33.3	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|124028257|ref|YP_001013577.1|	-	8.3e-06	25.5	0.4	3.2e-05	23.6	0.1	2.0	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|124028257|ref|YP_001013577.1|	-	2.8e-05	23.8	0.0	5.9e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
ABC_tran	PF00005.22	gi|124028259|ref|YP_001013579.1|	-	2.5e-24	86.1	0.0	3.6e-24	85.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
SbcCD_C	PF13558.1	gi|124028259|ref|YP_001013579.1|	-	0.00019	21.3	0.4	0.00092	19.0	0.0	2.4	3	1	0	3	3	3	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_21	PF13304.1	gi|124028259|ref|YP_001013579.1|	-	0.0022	17.9	0.0	0.0034	17.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|124028259|ref|YP_001013579.1|	-	0.1	11.7	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|124028259|ref|YP_001013579.1|	-	0.21	10.5	0.0	0.29	10.1	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
DUF72	PF01904.13	gi|124028260|ref|YP_001013580.1|	-	2.9e-49	167.8	0.5	3.5e-49	167.6	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
AP_endonuc_2	PF01261.19	gi|124028260|ref|YP_001013580.1|	-	5.3e-06	25.8	0.1	0.001	18.3	0.0	2.6	2	1	0	2	2	2	2	Xylose	isomerase-like	TIM	barrel
DegT_DnrJ_EryC1	PF01041.12	gi|124028261|ref|YP_001013581.1|	-	1.4e-135	451.9	0.0	1.6e-135	451.8	0.0	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.16	gi|124028261|ref|YP_001013581.1|	-	9.5e-12	44.6	0.1	1.7e-11	43.8	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|124028261|ref|YP_001013581.1|	-	2.9e-08	32.8	0.0	5.3e-08	32.0	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|124028261|ref|YP_001013581.1|	-	1.5e-05	23.5	0.0	2.1e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|124028261|ref|YP_001013581.1|	-	7.6e-05	21.8	0.0	0.00011	21.2	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DUF4350	PF14258.1	gi|124028261|ref|YP_001013581.1|	-	0.03	14.5	0.0	2.1	8.5	0.0	3.6	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
OKR_DC_1	PF01276.15	gi|124028261|ref|YP_001013581.1|	-	0.079	11.4	0.0	0.12	10.8	0.0	1.3	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
GFO_IDH_MocA	PF01408.17	gi|124028262|ref|YP_001013582.1|	-	1e-23	84.1	0.2	1.6e-23	83.4	0.1	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.12	gi|124028262|ref|YP_001013582.1|	-	0.0022	18.3	0.1	0.0048	17.3	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|124028262|ref|YP_001013582.1|	-	0.056	13.0	0.1	0.093	12.3	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|124028262|ref|YP_001013582.1|	-	0.057	12.8	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|124028262|ref|YP_001013582.1|	-	0.071	13.2	0.1	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.22	gi|124028262|ref|YP_001013582.1|	-	0.14	12.5	0.4	0.67	10.4	0.1	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|124028262|ref|YP_001013582.1|	-	0.15	11.7	0.1	0.3	10.7	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Hexapep	PF00132.19	gi|124028263|ref|YP_001013583.1|	-	1.4e-29	100.2	30.3	6.9e-10	37.9	3.2	5.3	3	1	3	6	6	6	6	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|124028263|ref|YP_001013583.1|	-	4.9e-20	70.7	23.6	2.3e-09	36.6	3.2	5.6	5	1	0	5	5	5	4	Hexapeptide	repeat	of	succinyl-transferase
Drf_FH1	PF06346.7	gi|124028263|ref|YP_001013583.1|	-	0.039	13.4	0.2	0.093	12.2	0.0	1.6	2	0	0	2	2	2	0	Formin	Homology	Region	1
BPD_transp_2	PF02653.11	gi|124028264|ref|YP_001013584.1|	-	1.3e-40	139.1	25.9	1.7e-40	138.7	17.9	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|124028265|ref|YP_001013585.1|	-	4.6e-40	137.2	29.0	4.6e-40	137.2	20.1	1.9	1	1	1	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|124028266|ref|YP_001013586.1|	-	2.8e-49	166.9	0.0	1.8e-31	109.2	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|124028266|ref|YP_001013586.1|	-	2.4e-12	47.4	0.8	1.2e-05	25.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|124028266|ref|YP_001013586.1|	-	0.0029	17.1	0.1	0.18	11.3	0.0	2.7	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|124028266|ref|YP_001013586.1|	-	0.0083	15.2	0.0	0.61	9.0	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|124028266|ref|YP_001013586.1|	-	0.016	14.6	1.2	3	7.1	0.0	2.9	3	0	0	3	3	3	0	AAA-like	domain
UPF0079	PF02367.12	gi|124028266|ref|YP_001013586.1|	-	0.016	14.8	1.0	0.056	13.0	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Bac_DnaA	PF00308.13	gi|124028266|ref|YP_001013586.1|	-	0.023	14.3	0.5	0.26	10.9	0.0	2.7	3	0	0	3	3	3	0	Bacterial	dnaA	protein
eRF1_3	PF03465.10	gi|124028266|ref|YP_001013586.1|	-	0.024	14.8	0.0	0.35	11.1	0.0	2.3	2	0	0	2	2	2	0	eRF1	domain	3
AAA_25	PF13481.1	gi|124028266|ref|YP_001013586.1|	-	0.04	13.2	0.2	0.17	11.2	0.2	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|124028266|ref|YP_001013586.1|	-	0.044	13.9	0.9	0.55	10.3	0.7	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|124028266|ref|YP_001013586.1|	-	0.056	13.4	0.6	0.16	11.8	0.0	2.1	3	0	0	3	3	3	0	AAA	ATPase	domain
Ribosomal_L4	PF00573.17	gi|124028266|ref|YP_001013586.1|	-	0.074	12.4	0.0	4.9	6.4	0.0	2.3	2	0	0	2	2	2	0	Ribosomal	protein	L4/L1	family
AAA_23	PF13476.1	gi|124028266|ref|YP_001013586.1|	-	0.089	13.1	0.1	0.17	12.1	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|124028266|ref|YP_001013586.1|	-	0.12	11.5	0.1	1.5	7.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
NACHT	PF05729.7	gi|124028266|ref|YP_001013586.1|	-	0.13	11.9	0.0	0.42	10.2	0.0	1.9	1	0	0	1	1	1	0	NACHT	domain
AAA_19	PF13245.1	gi|124028266|ref|YP_001013586.1|	-	0.15	11.7	4.0	3.4	7.4	0.0	3.2	3	0	0	3	3	3	0	Part	of	AAA	domain
ABC_ATPase	PF09818.4	gi|124028266|ref|YP_001013586.1|	-	5.6	5.4	5.7	2.6	6.5	0.0	2.9	4	0	0	4	4	4	0	Predicted	ATPase	of	the	ABC	class
Bmp	PF02608.9	gi|124028267|ref|YP_001013587.1|	-	3.1e-60	203.5	0.1	4.6e-60	202.9	0.1	1.2	1	0	0	1	1	1	1	Basic	membrane	protein
SpoIIIAH	PF12685.2	gi|124028267|ref|YP_001013587.1|	-	0.00034	20.1	1.4	0.0031	17.0	0.1	2.2	2	0	0	2	2	2	1	SpoIIIAH-like	protein
SoxE	PF06525.6	gi|124028267|ref|YP_001013587.1|	-	0.0044	16.3	0.2	0.0085	15.3	0.2	1.5	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)
Shisa	PF13908.1	gi|124028267|ref|YP_001013587.1|	-	0.012	15.7	1.3	0.02	15.0	0.9	1.3	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Peripla_BP_1	PF00532.16	gi|124028267|ref|YP_001013587.1|	-	0.039	13.1	0.0	0.063	12.4	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
DUF2333	PF10095.4	gi|124028267|ref|YP_001013587.1|	-	0.053	12.1	1.0	0.079	11.5	0.7	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2333)
DUF2561	PF10812.3	gi|124028267|ref|YP_001013587.1|	-	0.057	13.0	0.6	0.11	12.1	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2561)
DUF1212	PF06738.7	gi|124028267|ref|YP_001013587.1|	-	0.2	11.1	0.8	3.3	7.1	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1212)
Glyco_trans_1_3	PF13528.1	gi|124028268|ref|YP_001013588.1|	-	1.2e-13	50.9	0.0	1.3e-09	37.7	0.0	2.1	2	0	0	2	2	2	2	Glycosyl	transferase	family	1
Glyco_tran_28_C	PF04101.11	gi|124028268|ref|YP_001013588.1|	-	2.2e-07	30.7	0.0	4e-07	29.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Alg14	PF08660.6	gi|124028268|ref|YP_001013588.1|	-	7e-07	29.4	0.0	1.2e-06	28.6	0.0	1.3	1	0	0	1	1	1	1	Oligosaccharide	biosynthesis	protein	Alg14	like
Glyco_trans_4_4	PF13579.1	gi|124028268|ref|YP_001013588.1|	-	0.00066	19.8	11.9	0.00066	19.8	8.2	2.7	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.1	gi|124028268|ref|YP_001013588.1|	-	0.0017	18.5	0.2	0.0063	16.6	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
NAD_binding_10	PF13460.1	gi|124028268|ref|YP_001013588.1|	-	0.0075	16.2	0.6	3.8	7.4	0.2	2.5	2	1	0	2	2	2	2	NADH(P)-binding
YjeF_N	PF03853.10	gi|124028268|ref|YP_001013588.1|	-	0.044	13.3	0.1	0.089	12.3	0.0	1.5	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
Hydrolase_4	PF12146.3	gi|124028268|ref|YP_001013588.1|	-	0.049	13.4	0.4	0.13	12.0	0.3	1.8	1	0	0	1	1	1	0	Putative	lysophospholipase
Glyco_transf_28	PF03033.15	gi|124028268|ref|YP_001013588.1|	-	0.086	12.5	1.7	0.15	11.7	1.2	1.4	1	0	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|124028269|ref|YP_001013589.1|	-	3.7e-46	156.8	0.0	7.9e-46	155.7	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|124028269|ref|YP_001013589.1|	-	2.4e-23	82.1	0.0	4e-23	81.4	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|124028269|ref|YP_001013589.1|	-	2.1e-22	79.2	0.0	7e-22	77.5	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.10	gi|124028269|ref|YP_001013589.1|	-	2.9e-07	30.4	0.0	7.8e-06	25.8	0.0	2.7	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|124028269|ref|YP_001013589.1|	-	6.9e-05	22.6	0.0	0.00054	19.7	0.0	2.3	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|124028269|ref|YP_001013589.1|	-	0.00046	19.8	0.1	0.0048	16.5	0.0	2.6	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|124028269|ref|YP_001013589.1|	-	0.0032	16.6	0.3	0.23	10.6	0.0	3.2	2	2	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_11	PF14833.1	gi|124028269|ref|YP_001013589.1|	-	0.06	13.3	0.3	0.13	12.3	0.2	1.5	1	0	0	1	1	1	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
ApbA	PF02558.11	gi|124028269|ref|YP_001013589.1|	-	0.061	12.7	0.0	0.17	11.2	0.0	1.8	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Methyltransf_18	PF12847.2	gi|124028269|ref|YP_001013589.1|	-	0.11	13.0	0.0	0.8	10.3	0.0	2.2	2	0	0	2	2	2	0	Methyltransferase	domain
Memo	PF01875.12	gi|124028270|ref|YP_001013590.1|	-	3.2e-67	226.3	0.0	3.9e-67	226.0	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
LigB	PF02900.13	gi|124028270|ref|YP_001013590.1|	-	5.5e-07	28.8	0.0	3.3e-06	26.2	0.0	1.9	2	0	0	2	2	2	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
PTS_IIB	PF02302.12	gi|124028270|ref|YP_001013590.1|	-	0.077	13.4	0.1	0.31	11.5	0.0	2.0	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
NTP_transferase	PF00483.18	gi|124028272|ref|YP_001013592.1|	-	1.5e-38	132.5	0.0	1.7e-38	132.3	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|124028272|ref|YP_001013592.1|	-	1.3e-15	57.8	0.0	3.8e-15	56.3	0.0	1.7	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|124028272|ref|YP_001013592.1|	-	1.4e-05	24.7	0.0	2.1e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4224	PF13986.1	gi|124028272|ref|YP_001013592.1|	-	0.0034	16.9	0.0	0.019	14.4	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4224)
Glycos_transf_2	PF00535.21	gi|124028272|ref|YP_001013592.1|	-	0.04	13.5	0.0	0.052	13.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
NUDIX	PF00293.23	gi|124028273|ref|YP_001013593.1|	-	9.7e-24	83.5	0.1	1.2e-23	83.2	0.1	1.0	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|124028273|ref|YP_001013593.1|	-	0.046	13.1	0.0	0.067	12.6	0.0	1.2	1	0	0	1	1	1	0	NUDIX	domain
tRNA-synt_1	PF00133.17	gi|124028274|ref|YP_001013594.1|	-	1.8e-176	587.6	0.8	2.3e-176	587.3	0.6	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|124028274|ref|YP_001013594.1|	-	2.4e-28	98.8	2.7	5.3e-28	97.7	1.9	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|124028274|ref|YP_001013594.1|	-	2.6e-19	69.1	0.4	3e-07	29.4	0.0	4.0	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|124028274|ref|YP_001013594.1|	-	5.5e-07	29.0	0.0	1.1e-06	28.0	0.0	1.5	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|124028274|ref|YP_001013594.1|	-	3.8e-06	26.2	0.0	0.083	12.0	0.0	2.7	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|124028274|ref|YP_001013594.1|	-	6.6e-05	21.7	0.0	0.00015	20.6	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
GFA	PF04828.9	gi|124028274|ref|YP_001013594.1|	-	0.047	13.6	0.7	4.9	7.1	0.0	3.1	3	1	1	4	4	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn-ribbon_8	PF09723.5	gi|124028274|ref|YP_001013594.1|	-	0.25	11.3	3.3	7.2	6.6	0.1	3.3	3	0	0	3	3	3	0	Zinc	ribbon	domain
zf-IS66	PF13005.2	gi|124028274|ref|YP_001013594.1|	-	0.25	11.3	3.1	10	6.1	0.0	3.4	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DZR	PF12773.2	gi|124028274|ref|YP_001013594.1|	-	0.26	11.1	4.4	49	3.8	1.3	3.5	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|124028274|ref|YP_001013594.1|	-	0.38	9.9	6.5	6.5	6.0	0.0	3.8	4	0	0	4	4	4	0	Transcription	factor	zinc-finger
zf-ISL3	PF14690.1	gi|124028274|ref|YP_001013594.1|	-	0.79	9.8	5.7	16	5.6	0.0	4.0	4	0	0	4	4	4	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ribbon_3	PF13248.1	gi|124028274|ref|YP_001013594.1|	-	1.1	8.5	11.4	6.3	6.1	0.1	3.9	3	1	1	4	4	3	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124028274|ref|YP_001013594.1|	-	1.3	8.6	6.3	12	5.5	0.0	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124028274|ref|YP_001013594.1|	-	3.2	7.5	7.1	14	5.5	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|124028274|ref|YP_001013594.1|	-	6.2	6.7	12.8	17	5.3	0.0	4.6	4	0	0	4	4	4	0	Transposase	zinc-ribbon	domain
B3_4	PF03483.12	gi|124028276|ref|YP_001013596.1|	-	1.6e-27	96.0	0.0	2.2e-27	95.6	0.0	1.1	1	0	0	1	1	1	1	B3/4	domain
RVT_thumb	PF06817.9	gi|124028276|ref|YP_001013596.1|	-	0.15	11.6	0.0	0.25	10.9	0.0	1.3	1	0	0	1	1	1	0	Reverse	transcriptase	thumb	domain
GHMP_kinases_N	PF00288.21	gi|124028277|ref|YP_001013597.1|	-	0.099	12.7	3.0	0.21	11.6	2.1	1.6	1	0	0	1	1	1	0	GHMP	kinases	N	terminal	domain
Zn-ribbon_8	PF09723.5	gi|124028278|ref|YP_001013598.1|	-	0.0019	18.0	1.8	0.0041	17.0	1.2	1.5	1	0	0	1	1	1	1	Zinc	ribbon	domain
HTH_11	PF08279.7	gi|124028278|ref|YP_001013598.1|	-	0.0068	16.0	0.1	0.016	14.8	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_5	PF01022.15	gi|124028278|ref|YP_001013598.1|	-	0.0075	15.9	0.1	0.026	14.2	0.1	1.9	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|124028278|ref|YP_001013598.1|	-	0.017	14.6	0.2	0.041	13.4	0.1	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HARE-HTH	PF05066.8	gi|124028278|ref|YP_001013598.1|	-	0.019	15.3	0.0	0.038	14.3	0.0	1.7	1	1	0	1	1	1	0	HB1,	ASXL,	restriction	endonuclease	HTH	domain
HypA	PF01155.14	gi|124028278|ref|YP_001013598.1|	-	0.025	14.2	0.9	0.063	12.9	0.5	1.7	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
HTH_24	PF13412.1	gi|124028278|ref|YP_001013598.1|	-	0.044	13.1	0.0	0.099	12.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.5	gi|124028278|ref|YP_001013598.1|	-	0.06	13.0	1.4	0.11	12.2	0.9	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
zf-C2HC5	PF06221.8	gi|124028278|ref|YP_001013598.1|	-	0.11	12.2	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
MarR_2	PF12802.2	gi|124028278|ref|YP_001013598.1|	-	0.11	12.1	0.0	0.25	11.0	0.0	1.7	1	0	0	1	1	1	0	MarR	family
UPF0547	PF10571.4	gi|124028278|ref|YP_001013598.1|	-	0.12	12.0	5.4	0.21	11.3	0.2	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TrmB	PF01978.14	gi|124028278|ref|YP_001013598.1|	-	0.14	11.8	0.0	0.47	10.1	0.0	1.9	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
TF_Zn_Ribbon	PF08271.7	gi|124028278|ref|YP_001013598.1|	-	0.38	10.1	2.1	8	5.8	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
Rubredoxin	PF00301.15	gi|124028278|ref|YP_001013598.1|	-	1.7	8.5	5.0	38	4.2	3.5	2.2	1	1	0	1	1	1	0	Rubredoxin
Zn_Tnp_IS1595	PF12760.2	gi|124028278|ref|YP_001013598.1|	-	6.4	6.6	6.9	14	5.5	0.5	2.8	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-trcl	PF13451.1	gi|124028278|ref|YP_001013598.1|	-	9.7	5.9	8.5	13	5.5	1.7	2.3	1	1	1	2	2	2	0	Probable	zinc-binding	domain
Aminotran_3	PF00202.16	gi|124028279|ref|YP_001013599.1|	-	6.1e-57	192.9	0.0	7.8e-57	192.6	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Beta_elim_lyase	PF01212.16	gi|124028279|ref|YP_001013599.1|	-	0.085	11.9	0.0	0.33	10.0	0.0	2.0	1	1	0	1	1	1	0	Beta-eliminating	lyase
Bclx_interact	PF08945.5	gi|124028279|ref|YP_001013599.1|	-	0.099	12.1	0.7	0.44	10.1	0.1	2.1	2	0	0	2	2	2	0	Bcl-x	interacting,	BH3	domain
DapB_N	PF01113.15	gi|124028280|ref|YP_001013600.1|	-	1.7e-06	27.9	0.1	3.1e-06	27.1	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.19	gi|124028280|ref|YP_001013600.1|	-	0.066	13.1	1.0	0.51	10.2	0.0	2.6	3	0	0	3	3	3	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Glycos_transf_4	PF00953.16	gi|124028281|ref|YP_001013601.1|	-	4.3e-28	98.1	16.2	4.3e-28	98.1	11.2	1.9	1	1	1	2	2	2	1	Glycosyl	transferase	family	4
ATP_bind_1	PF03029.12	gi|124028282|ref|YP_001013602.1|	-	2.3e-54	184.4	0.0	2.7e-54	184.2	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
MMR_HSR1	PF01926.18	gi|124028282|ref|YP_001013602.1|	-	1.7e-05	24.7	0.0	4e-05	23.5	0.0	1.6	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_22	PF13401.1	gi|124028282|ref|YP_001013602.1|	-	1.9e-05	24.7	0.0	4.9e-05	23.4	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
GTP_EFTU	PF00009.22	gi|124028282|ref|YP_001013602.1|	-	2.5e-05	23.7	0.0	0.00089	18.7	0.0	2.7	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
CbiA	PF01656.18	gi|124028282|ref|YP_001013602.1|	-	2.8e-05	23.5	0.0	4.1e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_16	PF13191.1	gi|124028282|ref|YP_001013602.1|	-	5.8e-05	23.1	0.0	0.00012	22.1	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.17	gi|124028282|ref|YP_001013602.1|	-	6.1e-05	22.5	0.0	0.071	12.5	0.0	2.2	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|124028282|ref|YP_001013602.1|	-	7.6e-05	22.4	0.0	0.00032	20.4	0.0	1.9	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|124028282|ref|YP_001013602.1|	-	9.4e-05	23.2	0.0	0.0002	22.1	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|124028282|ref|YP_001013602.1|	-	0.0001	21.2	0.1	0.0049	15.6	0.1	2.3	2	0	0	2	2	2	1	ArgK	protein
AAA_33	PF13671.1	gi|124028282|ref|YP_001013602.1|	-	0.00012	21.9	0.0	0.00021	21.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|124028282|ref|YP_001013602.1|	-	0.00033	20.1	0.0	0.00066	19.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
cobW	PF02492.14	gi|124028282|ref|YP_001013602.1|	-	0.00058	19.3	0.1	0.43	9.9	0.0	2.4	2	1	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_30	PF13604.1	gi|124028282|ref|YP_001013602.1|	-	0.00091	18.8	0.0	0.002	17.7	0.0	1.5	2	0	0	2	2	1	1	AAA	domain
NTPase_1	PF03266.10	gi|124028282|ref|YP_001013602.1|	-	0.001	18.8	0.0	0.0017	18.0	0.0	1.3	1	0	0	1	1	1	1	NTPase
AAA_PrkA	PF08298.6	gi|124028282|ref|YP_001013602.1|	-	0.0018	17.0	0.0	0.003	16.3	0.0	1.5	1	0	0	1	1	1	1	PrkA	AAA	domain
DUF258	PF03193.11	gi|124028282|ref|YP_001013602.1|	-	0.0019	17.3	0.0	0.05	12.7	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_31	PF13614.1	gi|124028282|ref|YP_001013602.1|	-	0.0066	16.3	0.0	2.1	8.2	0.0	3.2	4	0	0	4	4	4	1	AAA	domain
ABC_tran	PF00005.22	gi|124028282|ref|YP_001013602.1|	-	0.0079	16.5	0.0	0.012	15.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_10	PF12846.2	gi|124028282|ref|YP_001013602.1|	-	0.0098	15.3	0.0	0.021	14.2	0.0	1.5	1	0	0	1	1	1	1	AAA-like	domain
MipZ	PF09140.6	gi|124028282|ref|YP_001013602.1|	-	0.017	14.2	0.0	0.047	12.7	0.0	1.7	1	1	0	1	1	1	0	ATPase	MipZ
APS_kinase	PF01583.15	gi|124028282|ref|YP_001013602.1|	-	0.017	14.7	0.0	0.032	13.8	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_5	PF07728.9	gi|124028282|ref|YP_001013602.1|	-	0.022	14.4	0.0	0.057	13.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Dynamin_N	PF00350.18	gi|124028282|ref|YP_001013602.1|	-	0.029	14.1	0.4	3.7	7.3	0.0	2.3	2	0	0	2	2	2	0	Dynamin	family
AAA_24	PF13479.1	gi|124028282|ref|YP_001013602.1|	-	0.032	13.8	0.0	0.1	12.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124028282|ref|YP_001013602.1|	-	0.044	13.4	0.0	0.087	12.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ArsA_ATPase	PF02374.10	gi|124028282|ref|YP_001013602.1|	-	0.047	12.7	0.0	0.19	10.7	0.0	1.9	2	0	0	2	2	2	0	Anion-transporting	ATPase
BRCT	PF00533.21	gi|124028282|ref|YP_001013602.1|	-	0.06	13.4	0.0	1.2	9.3	0.0	2.2	2	0	0	2	2	2	0	BRCA1	C	Terminus	(BRCT)	domain
T2SE	PF00437.15	gi|124028282|ref|YP_001013602.1|	-	0.075	11.9	0.0	0.15	10.8	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
PduV-EutP	PF10662.4	gi|124028282|ref|YP_001013602.1|	-	0.077	12.4	0.2	10	5.5	0.0	3.2	3	1	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_19	PF13245.1	gi|124028282|ref|YP_001013602.1|	-	0.088	12.5	0.1	0.22	11.3	0.1	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_28	PF13521.1	gi|124028282|ref|YP_001013602.1|	-	0.098	12.6	0.0	0.73	9.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|124028282|ref|YP_001013602.1|	-	0.13	11.6	0.1	0.48	9.7	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|124028282|ref|YP_001013602.1|	-	0.15	12.3	0.0	0.27	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DFP	PF04127.10	gi|124028284|ref|YP_001013604.1|	-	4.6e-58	195.8	0.3	7.8e-56	188.6	0.0	2.4	2	1	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|124028284|ref|YP_001013604.1|	-	8.9e-21	73.9	0.6	1.5e-20	73.1	0.2	1.6	2	0	0	2	2	2	1	Flavoprotein
DUF165	PF02592.10	gi|124028285|ref|YP_001013605.1|	-	3.8e-47	160.1	6.4	3.8e-47	160.1	4.5	1.6	2	0	0	2	2	2	1	Uncharacterized	ACR,	YhhQ	family	COG1738
ABC2_membrane_5	PF13346.1	gi|124028285|ref|YP_001013605.1|	-	0.11	11.7	8.1	0.23	10.7	5.6	1.4	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|124028286|ref|YP_001013606.1|	-	2.6e-09	36.5	21.6	3.9e-09	35.9	15.0	1.3	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane	PF01061.19	gi|124028287|ref|YP_001013607.1|	-	6e-06	25.5	18.8	2e-05	23.8	13.0	1.8	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|124028287|ref|YP_001013607.1|	-	6.3e-05	22.1	18.1	6.3e-05	22.1	12.5	1.9	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|124028288|ref|YP_001013608.1|	-	9.1e-26	90.7	0.0	1.4e-25	90.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124028288|ref|YP_001013608.1|	-	1.3e-16	61.3	0.1	1.8e-11	44.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|124028288|ref|YP_001013608.1|	-	2.9e-05	23.2	0.0	0.00017	20.7	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124028288|ref|YP_001013608.1|	-	8.1e-05	22.0	0.1	0.00032	20.1	0.1	2.0	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
DUF4162	PF13732.1	gi|124028288|ref|YP_001013608.1|	-	0.00064	20.1	0.0	0.0067	16.9	0.0	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_10	PF12846.2	gi|124028288|ref|YP_001013608.1|	-	0.0098	15.3	0.1	4.5	6.6	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
AAA_23	PF13476.1	gi|124028288|ref|YP_001013608.1|	-	0.018	15.4	0.0	0.028	14.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|124028288|ref|YP_001013608.1|	-	0.019	14.7	2.3	0.039	13.6	0.2	2.7	3	0	0	3	3	3	0	Part	of	AAA	domain
AAA	PF00004.24	gi|124028288|ref|YP_001013608.1|	-	0.028	14.6	0.0	0.14	12.3	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|124028288|ref|YP_001013608.1|	-	0.062	13.2	0.3	0.26	11.2	0.2	2.1	2	1	0	2	2	2	0	AAA	ATPase	domain
ACT	PF01842.20	gi|124028288|ref|YP_001013608.1|	-	0.077	12.5	0.0	0.35	10.4	0.0	2.2	2	0	0	2	2	2	0	ACT	domain
Rad17	PF03215.10	gi|124028288|ref|YP_001013608.1|	-	0.087	11.4	0.0	0.12	11.0	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_22	PF13401.1	gi|124028288|ref|YP_001013608.1|	-	0.088	12.9	0.2	10	6.2	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
SMC_N	PF02463.14	gi|124028288|ref|YP_001013608.1|	-	0.16	11.1	0.0	13	4.9	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|124028288|ref|YP_001013608.1|	-	0.18	11.1	1.0	3.6	6.9	0.7	2.7	1	1	0	1	1	1	0	AAA	domain
Cation_efflux	PF01545.16	gi|124028289|ref|YP_001013609.1|	-	2.1e-30	105.7	3.3	2.4e-30	105.6	2.3	1.0	1	0	0	1	1	1	1	Cation	efflux	family
DUF377	PF04041.8	gi|124028290|ref|YP_001013610.1|	-	8.4e-71	238.2	0.4	9.6e-71	238.0	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF377)
PIN	PF01850.16	gi|124028291|ref|YP_001013611.1|	-	1.1e-11	45.0	0.4	1.4e-11	44.7	0.3	1.1	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|124028292|ref|YP_001013612.1|	-	9.7e-08	31.5	0.9	9.7e-08	31.5	0.6	1.5	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
MraZ	PF02381.13	gi|124028292|ref|YP_001013612.1|	-	0.017	14.8	0.1	0.022	14.5	0.1	1.6	1	1	0	1	1	1	0	MraZ	protein
PEPCK	PF00821.13	gi|124028294|ref|YP_001013614.1|	-	4.4e-191	636.0	0.0	5e-191	635.8	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
DUF2204	PF09970.4	gi|124028295|ref|YP_001013615.1|	-	8.4e-71	237.1	1.2	9.5e-71	237.0	0.8	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
bact-PGI_C	PF10432.4	gi|124028296|ref|YP_001013616.1|	-	1.4e-30	106.0	0.0	2e-30	105.5	0.0	1.2	1	0	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	region
SIS	PF01380.17	gi|124028296|ref|YP_001013616.1|	-	7.4e-10	38.5	0.0	1.6e-09	37.4	0.0	1.5	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.1	gi|124028296|ref|YP_001013616.1|	-	0.021	14.5	0.6	0.14	11.8	0.0	2.1	1	1	0	2	2	2	0	SIS	domain
TGS	PF02824.16	gi|124028297|ref|YP_001013617.1|	-	0.0087	15.8	0.0	0.03	14.1	0.0	1.9	1	1	1	2	2	2	1	TGS	domain
Nse5	PF08691.5	gi|124028298|ref|YP_001013618.1|	-	0.072	11.5	0.0	0.083	11.3	0.0	1.0	1	0	0	1	1	1	0	DNA	repair	proteins	Nse5	and	Nse6
UbiD	PF01977.11	gi|124028299|ref|YP_001013619.1|	-	5.9e-155	515.7	0.1	7.1e-155	515.4	0.1	1.1	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
ABC_tran	PF00005.22	gi|124028300|ref|YP_001013620.1|	-	1.9e-25	89.7	0.0	3.4e-25	88.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124028300|ref|YP_001013620.1|	-	9.5e-14	52.0	0.0	1.1e-05	25.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|124028300|ref|YP_001013620.1|	-	1.2e-07	31.8	0.0	2.1e-07	31.1	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|124028300|ref|YP_001013620.1|	-	0.00078	20.2	0.0	0.012	16.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|124028300|ref|YP_001013620.1|	-	0.0017	18.6	0.1	0.0026	18.1	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|124028300|ref|YP_001013620.1|	-	0.0021	18.2	0.0	0.0094	16.1	0.0	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|124028300|ref|YP_001013620.1|	-	0.0025	17.5	0.1	0.0075	15.9	0.0	1.7	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_25	PF13481.1	gi|124028300|ref|YP_001013620.1|	-	0.0029	17.0	0.5	0.012	14.9	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124028300|ref|YP_001013620.1|	-	0.0042	16.9	0.1	0.42	10.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|124028300|ref|YP_001013620.1|	-	0.0066	16.1	0.0	0.012	15.2	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_29	PF13555.1	gi|124028300|ref|YP_001013620.1|	-	0.007	15.8	0.0	0.016	14.6	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|124028300|ref|YP_001013620.1|	-	0.0078	15.9	0.1	0.016	14.8	0.1	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|124028300|ref|YP_001013620.1|	-	0.0085	15.8	3.7	0.017	14.8	0.3	2.7	2	2	0	2	2	2	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|124028300|ref|YP_001013620.1|	-	0.0096	15.8	0.1	0.033	14.0	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|124028300|ref|YP_001013620.1|	-	0.0097	15.1	0.1	0.14	11.3	0.1	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|124028300|ref|YP_001013620.1|	-	0.014	15.5	0.1	0.15	12.1	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|124028300|ref|YP_001013620.1|	-	0.014	15.7	0.5	0.087	13.1	0.4	2.1	1	1	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.4	gi|124028300|ref|YP_001013620.1|	-	0.016	13.8	0.1	2.1	6.8	0.1	2.3	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
Miro	PF08477.8	gi|124028300|ref|YP_001013620.1|	-	0.021	15.3	0.0	0.041	14.3	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_15	PF13175.1	gi|124028300|ref|YP_001013620.1|	-	0.022	13.8	0.0	0.36	9.8	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
NB-ARC	PF00931.17	gi|124028300|ref|YP_001013620.1|	-	0.025	13.4	0.1	0.041	12.7	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_13	PF13166.1	gi|124028300|ref|YP_001013620.1|	-	0.026	13.0	0.0	0.037	12.5	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|124028300|ref|YP_001013620.1|	-	0.043	12.5	0.1	0.078	11.7	0.1	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_28	PF13521.1	gi|124028300|ref|YP_001013620.1|	-	0.043	13.7	0.0	0.078	12.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|124028300|ref|YP_001013620.1|	-	0.046	13.2	0.0	0.06	12.8	0.0	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SbcCD_C	PF13558.1	gi|124028300|ref|YP_001013620.1|	-	0.052	13.4	0.0	0.11	12.3	0.0	1.7	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_30	PF13604.1	gi|124028300|ref|YP_001013620.1|	-	0.078	12.5	0.1	0.26	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|124028300|ref|YP_001013620.1|	-	0.085	12.2	0.0	0.26	10.6	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Rad17	PF03215.10	gi|124028300|ref|YP_001013620.1|	-	0.11	11.1	0.0	0.15	10.7	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
RecA	PF00154.16	gi|124028300|ref|YP_001013620.1|	-	0.13	11.2	0.1	0.2	10.7	0.0	1.2	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
PduV-EutP	PF10662.4	gi|124028300|ref|YP_001013620.1|	-	0.13	11.7	0.0	0.61	9.5	0.0	1.9	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
DUF3584	PF12128.3	gi|124028300|ref|YP_001013620.1|	-	0.16	9.2	0.1	0.22	8.8	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
BPD_transp_1	PF00528.17	gi|124028301|ref|YP_001013621.1|	-	3.1e-15	56.1	17.5	3.1e-15	56.1	12.1	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1189	PF06691.6	gi|124028301|ref|YP_001013621.1|	-	0.014	14.7	1.0	0.02	14.2	0.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1189)
NMT1_2	PF13379.1	gi|124028302|ref|YP_001013622.1|	-	2.1e-24	86.3	0.1	2.9e-24	85.8	0.1	1.1	1	0	0	1	1	1	1	NMT1-like	family
NMT1	PF09084.6	gi|124028302|ref|YP_001013622.1|	-	2.4e-10	40.3	0.0	5.9e-10	39.0	0.0	1.6	1	1	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|124028302|ref|YP_001013622.1|	-	8.2e-10	38.4	0.0	1.1e-09	37.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_3	PF00497.15	gi|124028302|ref|YP_001013622.1|	-	6.3e-08	32.1	0.1	2.3e-06	27.0	0.0	2.2	1	1	1	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	3
OpuAC	PF04069.7	gi|124028302|ref|YP_001013622.1|	-	8.6e-08	31.8	0.1	3.5e-07	29.8	0.0	1.8	1	1	0	1	1	1	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
LysR_substrate	PF03466.15	gi|124028302|ref|YP_001013622.1|	-	0.017	14.1	0.2	7.4	5.6	0.0	2.9	2	1	0	3	3	3	0	LysR	substrate	binding	domain
VitK2_biosynth	PF02621.9	gi|124028302|ref|YP_001013622.1|	-	0.018	14.2	0.5	0.053	12.7	0.3	2.0	1	1	0	1	1	1	0	Menaquinone	biosynthesis
TPP_enzyme_C	PF02775.16	gi|124028304|ref|YP_001013624.1|	-	5.2e-29	100.8	0.1	1.1e-28	99.7	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.14	gi|124028304|ref|YP_001013624.1|	-	4.8e-16	58.9	0.0	7e-16	58.4	0.0	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.22	gi|124028304|ref|YP_001013624.1|	-	2.7e-10	39.3	15.5	2.3e-07	30.1	2.9	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124028304|ref|YP_001013624.1|	-	1.5e-06	27.7	20.1	0.00021	20.9	1.2	3.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|124028304|ref|YP_001013624.1|	-	2e-06	27.3	13.9	0.0013	18.5	1.7	2.9	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124028304|ref|YP_001013624.1|	-	2.8e-06	27.0	11.3	1e-05	25.2	7.9	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124028304|ref|YP_001013624.1|	-	3e-06	26.9	10.6	1.2e-05	25.0	7.3	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124028304|ref|YP_001013624.1|	-	5.4e-06	26.7	22.8	8.2e-05	22.9	9.0	2.5	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124028304|ref|YP_001013624.1|	-	2e-05	24.5	12.4	0.005	17.0	2.0	2.9	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|124028304|ref|YP_001013624.1|	-	2.6e-05	24.3	12.3	0.00013	22.1	8.3	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
TPP_enzyme_N	PF02776.13	gi|124028304|ref|YP_001013624.1|	-	5.8e-05	22.6	1.0	0.00013	21.5	0.1	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Transketolase_C	PF02780.15	gi|124028304|ref|YP_001013624.1|	-	0.00019	21.3	0.0	0.0014	18.5	0.0	2.4	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
Fer4_11	PF13247.1	gi|124028304|ref|YP_001013624.1|	-	0.00041	20.1	4.9	0.00082	19.2	3.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124028304|ref|YP_001013624.1|	-	0.0021	18.0	10.3	0.0057	16.6	7.2	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|124028304|ref|YP_001013624.1|	-	0.014	16.1	9.0	0.018	15.7	0.8	2.6	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
DXP_synthase_N	PF13292.1	gi|124028304|ref|YP_001013624.1|	-	0.034	13.0	0.0	0.065	12.1	0.0	1.4	1	0	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
Fer4_13	PF13370.1	gi|124028304|ref|YP_001013624.1|	-	0.15	12.4	10.9	2.1	8.8	1.1	2.6	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|124028304|ref|YP_001013624.1|	-	0.23	11.8	13.3	0.15	12.4	1.1	3.0	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|124028304|ref|YP_001013624.1|	-	3.5	8.1	14.9	0.12	12.7	2.2	2.6	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124028304|ref|YP_001013624.1|	-	5.4	7.6	12.8	4.8	7.8	2.1	2.7	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
POR	PF01558.13	gi|124028305|ref|YP_001013625.1|	-	4.5e-33	114.5	0.0	5.2e-33	114.3	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
CHB_HEX_C_1	PF13290.1	gi|124028306|ref|YP_001013626.1|	-	0.13	12.0	0.9	0.19	11.5	0.6	1.2	1	0	0	1	1	1	0	Chitobiase/beta-hexosaminidase	C-terminal	domain
SIR2	PF02146.12	gi|124028307|ref|YP_001013627.1|	-	4.2e-55	186.2	0.0	5.1e-55	185.9	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
Mu-like_Com	PF10122.4	gi|124028307|ref|YP_001013627.1|	-	0.17	10.9	2.1	0.34	9.9	1.4	1.5	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
Phos_pyr_kin	PF08543.7	gi|124028308|ref|YP_001013628.1|	-	2.1e-79	266.1	0.0	3e-79	265.7	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Aldolase_2	PF10120.4	gi|124028308|ref|YP_001013628.1|	-	1.6e-62	209.8	0.6	2.6e-62	209.1	0.4	1.4	1	0	0	1	1	1	1	Putative	aldolase
PfkB	PF00294.19	gi|124028308|ref|YP_001013628.1|	-	2.5e-10	39.9	0.0	4.7e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
FAD-oxidase_C	PF02913.14	gi|124028309|ref|YP_001013629.1|	-	1e-60	205.1	0.0	1.7e-60	204.4	0.0	1.4	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|124028309|ref|YP_001013629.1|	-	1.2e-36	125.2	0.1	3e-36	123.9	0.1	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.1	gi|124028310|ref|YP_001013630.1|	-	7.7e-11	42.1	2.2	1e-10	41.7	1.5	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124028310|ref|YP_001013630.1|	-	7e-10	38.7	2.6	1e-09	38.2	1.8	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|124028310|ref|YP_001013630.1|	-	1e-08	34.8	12.5	4.6e-07	29.5	3.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028310|ref|YP_001013630.1|	-	1.5e-07	31.5	4.6	0.0025	18.0	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124028310|ref|YP_001013630.1|	-	2e-07	30.2	13.3	0.00089	18.7	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|124028310|ref|YP_001013630.1|	-	2.9e-07	30.8	4.5	0.00088	19.6	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124028310|ref|YP_001013630.1|	-	1.6e-06	28.4	31.2	6.6e-05	23.2	7.3	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124028310|ref|YP_001013630.1|	-	6.1e-06	25.8	13.0	0.0029	17.4	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|124028310|ref|YP_001013630.1|	-	7.5e-05	22.7	9.7	0.0099	16.1	0.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|124028310|ref|YP_001013630.1|	-	0.00039	20.1	12.8	0.049	13.5	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124028310|ref|YP_001013630.1|	-	0.00041	20.1	4.8	0.19	11.5	0.2	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|124028310|ref|YP_001013630.1|	-	0.0018	18.6	16.5	0.029	14.9	3.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|124028310|ref|YP_001013630.1|	-	0.002	18.8	8.8	0.014	16.1	6.3	1.9	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|124028310|ref|YP_001013630.1|	-	0.0041	17.6	3.0	0.73	10.4	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_20	PF14691.1	gi|124028310|ref|YP_001013630.1|	-	0.029	14.0	5.4	0.71	9.5	1.1	2.1	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_13	PF13370.1	gi|124028310|ref|YP_001013630.1|	-	1.9	8.9	10.8	6.5	7.2	0.9	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
SBP_bac_1	PF01547.20	gi|124028312|ref|YP_001013632.1|	-	4e-31	108.9	9.5	1.5e-30	107.0	6.6	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
RNA12	PF10443.4	gi|124028312|ref|YP_001013632.1|	-	0.041	12.3	0.2	0.29	9.5	0.1	2.0	2	0	0	2	2	2	0	RNA12	protein
ApoC-I	PF04691.7	gi|124028312|ref|YP_001013632.1|	-	0.11	12.2	0.4	0.8	9.4	0.0	2.2	2	0	0	2	2	2	0	Apolipoprotein	C-I	(ApoC-1)
BPD_transp_1	PF00528.17	gi|124028313|ref|YP_001013633.1|	-	1.5e-15	57.2	14.0	1.5e-15	57.2	9.7	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|124028314|ref|YP_001013634.1|	-	3.7e-10	39.6	21.3	3.7e-10	39.6	14.8	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|124028315|ref|YP_001013635.1|	-	5.8e-36	123.8	0.0	8.8e-36	123.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124028315|ref|YP_001013635.1|	-	1.7e-11	44.6	1.3	5e-05	23.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|124028315|ref|YP_001013635.1|	-	1.5e-05	24.9	1.3	0.00091	19.2	0.0	3.3	3	1	0	3	3	2	1	TOBE	domain
TOBE_2	PF08402.5	gi|124028315|ref|YP_001013635.1|	-	4.8e-05	23.2	0.0	0.00014	21.7	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.14	gi|124028315|ref|YP_001013635.1|	-	0.00019	20.7	0.6	0.38	9.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|124028315|ref|YP_001013635.1|	-	0.0019	17.3	0.0	0.079	11.9	0.0	2.1	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124028315|ref|YP_001013635.1|	-	0.0025	17.3	0.0	0.0073	15.8	0.0	1.8	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|124028315|ref|YP_001013635.1|	-	0.0045	16.4	0.0	0.011	15.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124028315|ref|YP_001013635.1|	-	0.0053	16.4	0.0	0.014	15.1	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_23	PF13476.1	gi|124028315|ref|YP_001013635.1|	-	0.0097	16.2	0.1	0.0097	16.2	0.1	1.5	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|124028315|ref|YP_001013635.1|	-	0.047	12.8	0.0	0.098	11.8	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|124028315|ref|YP_001013635.1|	-	0.061	12.9	0.0	0.16	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|124028315|ref|YP_001013635.1|	-	0.072	13.9	0.6	0.18	12.6	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|124028315|ref|YP_001013635.1|	-	0.075	12.6	0.0	0.18	11.4	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.24	gi|124028315|ref|YP_001013635.1|	-	0.079	13.1	0.1	0.76	9.9	0.0	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|124028315|ref|YP_001013635.1|	-	0.081	12.3	0.1	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
RecA	PF00154.16	gi|124028315|ref|YP_001013635.1|	-	0.09	11.8	0.0	0.17	10.9	0.0	1.4	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_16	PF13191.1	gi|124028315|ref|YP_001013635.1|	-	0.1	12.5	1.6	0.35	10.8	1.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
ABC_ATPase	PF09818.4	gi|124028315|ref|YP_001013635.1|	-	0.11	11.0	0.7	4.1	5.8	0.0	2.7	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
Adeno_IVa2	PF02456.10	gi|124028315|ref|YP_001013635.1|	-	0.16	10.5	0.0	0.25	9.9	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_22	PF13401.1	gi|124028315|ref|YP_001013635.1|	-	0.17	12.0	2.2	0.31	11.2	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
DDE_Tnp_IS66_C	PF13817.1	gi|124028316|ref|YP_001013636.1|	-	0.048	13.6	0.0	0.19	11.7	0.0	1.8	1	1	1	2	2	2	0	IS66	C-terminal	element
Snf7	PF03357.16	gi|124028317|ref|YP_001013637.1|	-	0.0069	15.7	5.7	0.014	14.8	3.9	1.5	1	1	0	1	1	1	1	Snf7
Paramyxo_NS_C	PF02725.9	gi|124028317|ref|YP_001013637.1|	-	0.04	13.5	0.5	0.077	12.6	0.3	1.5	1	0	0	1	1	1	0	Non-structural	protein	C
LOH1CR12	PF10158.4	gi|124028317|ref|YP_001013637.1|	-	0.065	13.0	0.9	0.13	12.0	0.3	1.7	2	0	0	2	2	2	0	Tumour	suppressor	protein
HK97-gp10_like	PF04883.7	gi|124028317|ref|YP_001013637.1|	-	0.34	11.8	1.9	3.8	8.5	0.0	2.5	2	1	0	2	2	2	0	Bacteriophage	HK97-gp10,	putative	tail-component
Peptidase_M20	PF01546.23	gi|124028318|ref|YP_001013638.1|	-	9.4e-42	142.6	0.0	1.2e-41	142.3	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|124028318|ref|YP_001013638.1|	-	1.6e-20	72.9	0.0	3e-20	72.0	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|124028318|ref|YP_001013638.1|	-	0.0041	16.8	0.0	0.023	14.4	0.0	1.9	2	0	0	2	2	2	1	Peptidase	family	M28
SBP_bac_5	PF00496.17	gi|124028318|ref|YP_001013638.1|	-	0.058	12.2	0.0	0.09	11.5	0.0	1.2	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Phosphonate-bd	PF12974.2	gi|124028318|ref|YP_001013638.1|	-	0.079	12.3	0.1	0.72	9.1	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
HGTP_anticodon	PF03129.15	gi|124028318|ref|YP_001013638.1|	-	0.12	12.3	0.0	5.8	6.9	0.0	2.3	2	0	0	2	2	2	0	Anticodon	binding	domain
PadR	PF03551.9	gi|124028320|ref|YP_001013640.1|	-	9.5e-18	63.7	0.6	1.7e-17	62.9	0.4	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|124028320|ref|YP_001013640.1|	-	0.00073	19.1	0.0	0.78	9.4	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HxlR	PF01638.12	gi|124028320|ref|YP_001013640.1|	-	0.0027	17.2	1.2	0.0044	16.6	0.1	2.0	2	1	0	2	2	2	1	HxlR-like	helix-turn-helix
TrmB	PF01978.14	gi|124028320|ref|YP_001013640.1|	-	0.0032	17.1	1.2	0.097	12.3	0.0	2.7	3	1	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|124028320|ref|YP_001013640.1|	-	0.012	15.3	0.0	0.053	13.2	0.0	2.0	2	0	0	2	2	2	0	MarR	family
Replic_Relax	PF13814.1	gi|124028320|ref|YP_001013640.1|	-	0.037	13.8	0.1	0.06	13.1	0.0	1.3	1	1	0	1	1	1	0	Replication-relaxation
PqqD	PF05402.7	gi|124028320|ref|YP_001013640.1|	-	0.049	13.6	0.1	1.3	9.0	0.0	2.6	2	1	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HTH_34	PF13601.1	gi|124028320|ref|YP_001013640.1|	-	0.091	12.8	0.0	0.17	11.9	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HisKA_3	PF07730.8	gi|124028320|ref|YP_001013640.1|	-	0.25	11.7	3.9	0.4	11.0	1.8	2.0	2	1	1	3	3	3	0	Histidine	kinase
KfrA_N	PF11740.3	gi|124028320|ref|YP_001013640.1|	-	6.4	7.2	9.2	24	5.4	0.0	2.5	1	1	1	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
HypA	PF01155.14	gi|124028321|ref|YP_001013641.1|	-	0.002	17.7	0.0	0.0031	17.1	0.0	1.3	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
FYDLN_acid	PF09538.5	gi|124028321|ref|YP_001013641.1|	-	0.093	13.3	0.0	0.14	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
Zn_Tnp_IS1595	PF12760.2	gi|124028321|ref|YP_001013641.1|	-	0.13	12.0	0.9	11	5.8	0.0	2.3	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|124028321|ref|YP_001013641.1|	-	0.17	11.4	2.1	1.9	8.1	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|124028321|ref|YP_001013641.1|	-	0.25	10.5	3.1	9.2	5.6	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124028321|ref|YP_001013641.1|	-	0.36	10.5	2.7	2.2	8.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|124028321|ref|YP_001013641.1|	-	0.56	9.9	4.3	4.6	7.0	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.1	gi|124028321|ref|YP_001013641.1|	-	0.96	9.1	4.4	7.9	6.2	0.3	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
RRN7	PF11781.3	gi|124028321|ref|YP_001013641.1|	-	2.3	7.8	6.1	7.4	6.1	4.2	1.8	1	1	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
TFIIS_C	PF01096.13	gi|124028321|ref|YP_001013641.1|	-	2.3	7.9	5.0	4.8	6.8	0.6	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_2	PF13240.1	gi|124028321|ref|YP_001013641.1|	-	4.9	6.7	5.8	15	5.2	0.8	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
TPP_enzyme_M	PF00205.17	gi|124028323|ref|YP_001013643.1|	-	0.0091	15.7	0.0	0.014	15.1	0.0	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Tautomerase_3	PF14832.1	gi|124028323|ref|YP_001013643.1|	-	0.012	15.6	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	Putative	oxalocrotonate	tautomerase	enzyme
Talin_middle	PF09141.5	gi|124028323|ref|YP_001013643.1|	-	0.087	12.5	1.2	0.12	11.9	0.2	1.6	2	0	0	2	2	2	0	Talin,	middle	domain
SPOR	PF05036.8	gi|124028323|ref|YP_001013643.1|	-	0.11	12.7	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	Sporulation	related	domain
AAA_23	PF13476.1	gi|124028323|ref|YP_001013643.1|	-	0.12	12.6	1.4	0.13	12.5	1.0	1.1	1	0	0	1	1	1	0	AAA	domain
DUF1700	PF08006.6	gi|124028323|ref|YP_001013643.1|	-	1.8	7.7	4.6	1.2	8.3	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1700)
VirE_N	PF08800.5	gi|124028324|ref|YP_001013644.1|	-	0.0018	18.0	0.0	0.002	17.8	0.0	1.1	1	0	0	1	1	1	1	VirE	N-terminal	domain
Remorin_C	PF03763.8	gi|124028324|ref|YP_001013644.1|	-	0.0036	16.8	0.2	0.0039	16.7	0.1	1.0	1	0	0	1	1	1	1	Remorin,	C-terminal	region
Prefoldin_2	PF01920.15	gi|124028324|ref|YP_001013644.1|	-	0.0041	16.8	0.2	0.006	16.3	0.1	1.3	1	0	0	1	1	1	1	Prefoldin	subunit
Med9	PF07544.8	gi|124028324|ref|YP_001013644.1|	-	0.0048	16.6	1.3	0.0066	16.1	0.3	1.6	2	0	0	2	2	2	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
ACT_5	PF13710.1	gi|124028324|ref|YP_001013644.1|	-	0.012	15.3	0.1	4	7.3	0.0	2.1	2	0	0	2	2	2	0	ACT	domain
Hemerythrin	PF01814.18	gi|124028324|ref|YP_001013644.1|	-	0.015	15.4	1.4	0.019	15.1	0.9	1.3	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
MscS_porin	PF12795.2	gi|124028324|ref|YP_001013644.1|	-	0.02	14.2	1.7	0.021	14.1	1.2	1.0	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
Laminin_II	PF06009.7	gi|124028324|ref|YP_001013644.1|	-	0.02	14.6	0.1	0.024	14.3	0.1	1.1	1	0	0	1	1	1	0	Laminin	Domain	II
CCDC155	PF14662.1	gi|124028324|ref|YP_001013644.1|	-	0.021	14.3	1.0	0.023	14.3	0.7	1.0	1	0	0	1	1	1	0	Coiled-coil	region	of	CCDC155
Nsp1_C	PF05064.8	gi|124028324|ref|YP_001013644.1|	-	0.022	14.4	0.4	0.025	14.2	0.3	1.2	1	1	0	1	1	1	0	Nsp1-like	C-terminal	region
IncA	PF04156.9	gi|124028324|ref|YP_001013644.1|	-	0.037	13.6	1.7	0.041	13.4	1.2	1.0	1	0	0	1	1	1	0	IncA	protein
T2SM	PF04612.7	gi|124028324|ref|YP_001013644.1|	-	0.041	13.6	0.9	0.046	13.5	0.6	1.1	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	M
ALIX_LYPXL_bnd	PF13949.1	gi|124028324|ref|YP_001013644.1|	-	0.047	12.6	0.3	0.057	12.3	0.2	1.0	1	0	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
DUF892	PF05974.7	gi|124028324|ref|YP_001013644.1|	-	0.047	13.4	0.5	0.12	12.2	0.4	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
DUF2360	PF10152.4	gi|124028324|ref|YP_001013644.1|	-	0.049	13.9	0.4	0.049	13.9	0.3	1.1	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
DUF677	PF05055.7	gi|124028324|ref|YP_001013644.1|	-	0.054	12.1	0.1	0.059	12.0	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
DUF342	PF03961.8	gi|124028324|ref|YP_001013644.1|	-	0.076	11.4	0.0	0.085	11.2	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
RmuC	PF02646.11	gi|124028324|ref|YP_001013644.1|	-	0.077	11.8	0.3	0.078	11.7	0.2	1.2	1	0	0	1	1	1	0	RmuC	family
Myosin_tail_1	PF01576.14	gi|124028324|ref|YP_001013644.1|	-	0.083	10.5	1.2	0.091	10.4	0.9	1.0	1	0	0	1	1	1	0	Myosin	tail
FliJ	PF02050.11	gi|124028324|ref|YP_001013644.1|	-	0.09	12.8	1.2	0.11	12.5	0.8	1.2	1	1	0	1	1	1	0	Flagellar	FliJ	protein
Val_tRNA-synt_C	PF10458.4	gi|124028324|ref|YP_001013644.1|	-	0.13	12.3	5.0	0.26	11.4	3.4	1.7	1	1	0	1	1	1	0	Valyl	tRNA	synthetase	tRNA	binding	arm
UIM	PF02809.15	gi|124028324|ref|YP_001013644.1|	-	0.15	11.7	0.9	0.33	10.6	0.6	1.6	1	0	0	1	1	1	0	Ubiquitin	interaction	motif
DUF4349	PF14257.1	gi|124028324|ref|YP_001013644.1|	-	0.39	9.8	6.9	0.83	8.8	2.9	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4349)
DUF4140	PF13600.1	gi|124028324|ref|YP_001013644.1|	-	0.97	9.9	5.6	0.49	10.8	1.6	1.8	1	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Vac_Fusion	PF02346.11	gi|124028324|ref|YP_001013644.1|	-	1.2	8.5	6.3	2.7	7.5	3.3	2.2	1	1	1	2	2	2	0	Chordopoxvirus	fusion	protein
HisKA	PF00512.20	gi|124028324|ref|YP_001013644.1|	-	1.5	8.8	6.1	0.88	9.6	1.5	2.1	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Pox_A_type_inc	PF04508.7	gi|124028324|ref|YP_001013644.1|	-	1.5	8.7	10.1	5.4	7.0	3.0	3.0	2	1	1	3	3	3	0	Viral	A-type	inclusion	protein	repeat
SWIM	PF04434.12	gi|124028325|ref|YP_001013645.1|	-	0.0093	15.4	0.2	0.016	14.6	0.2	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
KAP_NTPase	PF07693.9	gi|124028326|ref|YP_001013646.1|	-	0.0011	17.9	0.0	0.041	12.8	0.0	2.4	2	0	0	2	2	2	1	KAP	family	P-loop	domain
Arch_ATPase	PF01637.13	gi|124028326|ref|YP_001013646.1|	-	0.035	13.8	0.4	1.2	8.7	0.0	3.2	2	1	0	2	2	2	0	Archaeal	ATPase
AAA_22	PF13401.1	gi|124028326|ref|YP_001013646.1|	-	0.036	14.1	1.9	0.54	10.4	0.0	3.6	4	0	0	4	4	4	0	AAA	domain
Ferritin	PF00210.19	gi|124028326|ref|YP_001013646.1|	-	0.81	9.4	6.6	2.8	7.7	0.1	3.7	2	1	1	3	3	3	0	Ferritin-like	domain
ApoLp-III	PF07464.6	gi|124028326|ref|YP_001013646.1|	-	8.3	6.4	9.8	13	5.8	0.0	3.3	3	1	0	3	3	3	0	Apolipophorin-III	precursor	(apoLp-III)
Flu_B_NS1	PF02942.9	gi|124028327|ref|YP_001013647.1|	-	0.085	11.7	0.0	0.16	10.8	0.0	1.4	2	0	0	2	2	2	0	Influenza	B	non-structural	protein	(NS1)
Acylphosphatase	PF00708.13	gi|124028328|ref|YP_001013648.1|	-	6.1e-11	42.2	0.0	6.8e-11	42.1	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
Radical_SAM	PF04055.16	gi|124028330|ref|YP_001013650.1|	-	1.6e-06	28.4	0.2	2.3e-06	27.8	0.1	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
YyzF	PF14116.1	gi|124028330|ref|YP_001013650.1|	-	0.26	11.2	0.9	0.66	9.9	0.2	1.9	2	0	0	2	2	2	0	YyzF-like	protein
Bac_Ubq_Cox	PF01654.12	gi|124028331|ref|YP_001013651.1|	-	6.8e-15	54.4	15.6	6.8e-15	54.4	10.8	2.0	2	0	0	2	2	2	1	Bacterial	Cytochrome	Ubiquinol	Oxidase
E1-E2_ATPase	PF00122.15	gi|124028331|ref|YP_001013651.1|	-	7.9	5.4	7.5	3.9	6.4	1.0	2.9	2	1	0	2	2	2	0	E1-E2	ATPase
Bac_Ubq_Cox	PF01654.12	gi|124028332|ref|YP_001013652.1|	-	1.9e-65	220.9	31.5	8.3e-64	215.5	21.8	2.7	1	1	0	1	1	1	1	Bacterial	Cytochrome	Ubiquinol	Oxidase
COX15-CtaA	PF02628.10	gi|124028332|ref|YP_001013652.1|	-	0.016	14.0	0.2	0.016	14.0	0.2	3.7	3	1	1	4	4	4	0	Cytochrome	oxidase	assembly	protein
DUF2231	PF09990.4	gi|124028332|ref|YP_001013652.1|	-	0.12	12.7	8.9	0.55	10.5	0.1	4.0	4	0	0	4	4	4	0	Predicted	membrane	protein	(DUF2231)
MitoNEET_N	PF10660.4	gi|124028332|ref|YP_001013652.1|	-	3.4	7.6	6.5	2.2	8.1	0.4	3.1	3	0	0	3	3	3	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
DUF3353	PF11833.3	gi|124028333|ref|YP_001013653.1|	-	0.46	9.9	4.1	0.54	9.6	2.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
RHH_3	PF12651.2	gi|124028334|ref|YP_001013654.1|	-	2.7e-15	55.8	0.0	4e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
NikR_C	PF08753.6	gi|124028334|ref|YP_001013654.1|	-	3.8e-07	29.8	0.1	4.2e-06	26.5	0.0	2.0	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|124028334|ref|YP_001013654.1|	-	8.3e-06	25.4	0.1	1.3e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RepB-RCR_reg	PF10723.4	gi|124028334|ref|YP_001013654.1|	-	0.064	12.9	0.0	0.21	11.3	0.0	1.8	1	1	1	2	2	2	0	Replication	regulatory	protein	RepB
PduL	PF06130.7	gi|124028334|ref|YP_001013654.1|	-	0.11	12.2	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	Propanediol	utilisation	protein	PduL
ABC-3	PF00950.12	gi|124028335|ref|YP_001013655.1|	-	9.9e-17	61.0	16.0	1.2e-16	60.8	11.1	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|124028335|ref|YP_001013655.1|	-	0.018	13.9	17.5	0.021	13.6	12.1	1.1	1	0	0	1	1	1	0	FecCD	transport	family
UbiA	PF01040.13	gi|124028336|ref|YP_001013656.1|	-	3.6e-34	118.1	29.3	4.4e-34	117.8	20.3	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF99	PF01949.11	gi|124028337|ref|YP_001013657.1|	-	3e-34	117.7	0.0	3.6e-34	117.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
DUF58	PF01882.13	gi|124028339|ref|YP_001013659.1|	-	5e-21	74.6	0.0	1.3e-20	73.3	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.13	gi|124028339|ref|YP_001013659.1|	-	0.00085	19.3	0.0	0.0027	17.7	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
Alpha-E	PF04168.7	gi|124028339|ref|YP_001013659.1|	-	0.03	13.6	0.0	0.048	13.0	0.0	1.3	1	0	0	1	1	1	0	A	predicted	alpha-helical	domain	with	a	conserved	ER	motif.
CARDB	PF07705.6	gi|124028339|ref|YP_001013659.1|	-	0.14	12.2	0.0	0.24	11.4	0.0	1.3	1	0	0	1	1	1	0	CARDB
AAA_3	PF07726.6	gi|124028340|ref|YP_001013660.1|	-	1.6e-58	195.9	0.0	2.9e-58	195.1	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|124028340|ref|YP_001013660.1|	-	3.5e-22	78.6	0.0	9.8e-22	77.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.18	gi|124028340|ref|YP_001013660.1|	-	5.7e-09	35.2	0.1	8.2e-05	21.5	0.0	3.2	2	1	0	2	2	2	2	MCM2/3/5	family
AAA	PF00004.24	gi|124028340|ref|YP_001013660.1|	-	1.1e-07	32.1	0.0	2.3e-07	31.0	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|124028340|ref|YP_001013660.1|	-	5.3e-07	29.2	0.0	4.1e-06	26.3	0.0	2.0	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.7	gi|124028340|ref|YP_001013660.1|	-	1e-06	27.9	0.0	1.1e-05	24.6	0.0	2.6	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
Mg_chelatase	PF01078.16	gi|124028340|ref|YP_001013660.1|	-	5.5e-06	25.6	0.5	0.029	13.5	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.1	gi|124028340|ref|YP_001013660.1|	-	0.025	14.5	0.3	0.26	11.2	0.0	2.1	2	1	0	3	3	3	0	AAA	ATPase	domain
Mg_chelatase_2	PF13335.1	gi|124028340|ref|YP_001013660.1|	-	0.062	13.7	0.3	0.18	12.2	0.1	1.8	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Arch_ATPase	PF01637.13	gi|124028341|ref|YP_001013661.1|	-	8.4e-10	38.7	0.0	4.4e-09	36.3	0.0	1.9	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|124028341|ref|YP_001013661.1|	-	2.5e-05	24.3	0.8	0.00028	20.9	0.1	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
DUF455	PF04305.9	gi|124028341|ref|YP_001013661.1|	-	0.18	11.0	0.1	0.27	10.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF455)
Polysacc_synt_C	PF14667.1	gi|124028342|ref|YP_001013662.1|	-	0.0027	17.5	48.5	0.023	14.4	7.6	3.2	2	1	1	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
TauE	PF01925.14	gi|124028343|ref|YP_001013663.1|	-	0.054	12.9	7.0	0.06	12.7	4.9	1.1	1	0	0	1	1	1	0	Sulfite	exporter	TauE/SafE
TauE	PF01925.14	gi|124028344|ref|YP_001013664.1|	-	4.2e-09	36.2	10.4	4.8e-09	36.0	7.2	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Caa3_CtaG	PF09678.5	gi|124028344|ref|YP_001013664.1|	-	1.3	7.9	9.6	0.33	9.8	3.6	1.9	1	1	1	2	2	2	0	Cytochrome	c	oxidase	caa3	assembly	factor	(Caa3_CtaG)
RHH_1	PF01402.16	gi|124028345|ref|YP_001013665.1|	-	5.7e-06	26.0	0.2	5.3e-05	22.9	0.0	2.1	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF3408	PF11888.3	gi|124028345|ref|YP_001013665.1|	-	0.013	15.4	0.7	0.021	14.7	0.4	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3408)
CheR_N	PF03705.10	gi|124028345|ref|YP_001013665.1|	-	0.019	14.2	0.1	0.038	13.3	0.0	1.5	2	0	0	2	2	2	0	CheR	methyltransferase,	all-alpha	domain
Med30	PF11315.3	gi|124028345|ref|YP_001013665.1|	-	0.044	13.9	0.2	0.051	13.7	0.1	1.0	1	0	0	1	1	1	0	Mediator	complex	subunit	30
Surf_Ag_VNR	PF07244.10	gi|124028345|ref|YP_001013665.1|	-	0.061	13.7	0.2	0.16	12.3	0.1	1.7	1	1	1	2	2	2	0	Surface	antigen	variable	number	repeat
HTH_22	PF13309.1	gi|124028345|ref|YP_001013665.1|	-	0.064	13.0	0.2	0.1	12.3	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
ATP-sulfurylase	PF01747.12	gi|124028346|ref|YP_001013666.1|	-	1.1e-92	309.2	0.1	1.5e-92	308.8	0.1	1.2	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.1	gi|124028346|ref|YP_001013666.1|	-	1.7e-56	190.0	0.0	2.5e-56	189.5	0.0	1.3	1	0	0	1	1	1	1	PUA-like	domain
DUF348	PF03990.9	gi|124028347|ref|YP_001013667.1|	-	0.038	13.5	0.0	0.095	12.2	0.1	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF348)
CcdA	PF07362.7	gi|124028348|ref|YP_001013668.1|	-	2.5e-08	33.6	0.2	3.6e-08	33.1	0.1	1.3	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
RHH_1	PF01402.16	gi|124028348|ref|YP_001013668.1|	-	3.8e-05	23.4	0.8	3.8e-05	23.4	0.6	2.4	3	1	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
PSK_trans_fac	PF07704.6	gi|124028348|ref|YP_001013668.1|	-	0.00083	19.9	1.4	0.0011	19.6	1.0	1.3	1	1	0	1	1	1	1	Rv0623-like	transcription	factor
RHH_3	PF12651.2	gi|124028348|ref|YP_001013668.1|	-	0.0098	15.6	0.3	0.034	13.8	0.2	1.9	1	1	0	1	1	1	1	Ribbon-helix-helix	domain
Aldolase_2	PF10120.4	gi|124028348|ref|YP_001013668.1|	-	0.013	14.9	0.0	0.014	14.7	0.0	1.1	1	0	0	1	1	1	0	Putative	aldolase
DIRP	PF06584.8	gi|124028348|ref|YP_001013668.1|	-	0.051	13.4	0.3	0.052	13.4	0.2	1.1	1	0	0	1	1	1	0	DIRP
DUF1947	PF09183.5	gi|124028348|ref|YP_001013668.1|	-	0.14	11.8	0.1	0.21	11.3	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1947)
DUF2191	PF09957.4	gi|124028348|ref|YP_001013668.1|	-	0.63	9.8	3.9	0.88	9.4	2.0	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
Phosphodiest	PF01663.17	gi|124028349|ref|YP_001013669.1|	-	5.8e-48	164.0	0.3	7.1e-48	163.7	0.2	1.1	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.18	gi|124028349|ref|YP_001013669.1|	-	0.017	14.3	0.1	0.031	13.4	0.0	1.5	1	0	0	1	1	1	0	Sulfatase
Peptidase_C37	PF05416.7	gi|124028350|ref|YP_001013670.1|	-	0.027	12.7	0.9	0.031	12.5	0.6	1.0	1	0	0	1	1	1	0	Southampton	virus-type	processing	peptidase
DUF2497	PF10691.4	gi|124028350|ref|YP_001013670.1|	-	0.035	14.0	0.1	0.46	10.4	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2497)
RHH_1	PF01402.16	gi|124028350|ref|YP_001013670.1|	-	0.068	13.0	1.7	0.68	9.9	0.0	2.7	1	1	2	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
UXS1_N	PF11803.3	gi|124028350|ref|YP_001013670.1|	-	0.4	10.4	2.1	0.46	10.2	1.1	1.5	1	1	0	1	1	1	0	UDP-glucuronate	decarboxylase	N-terminal
Glycos_transf_1	PF00534.15	gi|124028351|ref|YP_001013671.1|	-	5.2e-28	97.6	0.3	1.4e-27	96.1	0.1	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|124028351|ref|YP_001013671.1|	-	9e-14	51.7	0.0	2.2e-13	50.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|124028351|ref|YP_001013671.1|	-	6.7e-10	38.9	0.0	1.5e-09	37.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|124028351|ref|YP_001013671.1|	-	2.3e-07	30.9	0.0	8.5e-07	29.1	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|124028351|ref|YP_001013671.1|	-	0.003	17.7	0.0	0.42	10.7	0.0	2.9	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.15	gi|124028352|ref|YP_001013672.1|	-	6.6e-10	38.6	0.2	2.1e-09	37.0	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|124028352|ref|YP_001013672.1|	-	3.4e-07	30.5	0.1	6.2e-07	29.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Phosphodiest	PF01663.17	gi|124028353|ref|YP_001013673.1|	-	1e-05	25.0	0.0	1.1e-05	25.0	0.0	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.13	gi|124028354|ref|YP_001013674.1|	-	2.9e-05	23.5	0.0	3e-05	23.5	0.0	1.1	1	0	0	1	1	1	1	Metalloenzyme	superfamily
PglZ	PF08665.7	gi|124028354|ref|YP_001013674.1|	-	6.9e-05	22.5	0.0	8.4e-05	22.3	0.0	1.1	1	0	0	1	1	1	1	PglZ	domain
Phosphodiest	PF01663.17	gi|124028354|ref|YP_001013674.1|	-	0.00024	20.5	0.1	0.00026	20.4	0.0	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.18	gi|124028354|ref|YP_001013674.1|	-	0.051	12.7	0.0	0.051	12.7	0.0	1.1	1	0	0	1	1	1	0	Sulfatase
TatC	PF00902.13	gi|124028355|ref|YP_001013675.1|	-	7.1e-41	139.9	20.0	8.3e-41	139.7	13.9	1.0	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
MttA_Hcf106	PF02416.11	gi|124028356|ref|YP_001013676.1|	-	5.5e-19	67.0	1.1	9.8e-19	66.2	0.7	1.6	1	1	0	1	1	1	1	mttA/Hcf106	family
Rho_N	PF07498.7	gi|124028356|ref|YP_001013676.1|	-	0.019	14.7	1.9	0.074	12.8	1.5	1.8	2	0	0	2	2	2	0	Rho	termination	factor,	N-terminal	domain
IIGP	PF05049.8	gi|124028356|ref|YP_001013676.1|	-	0.027	13.3	0.1	0.03	13.1	0.1	1.1	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
Cse1	PF08506.5	gi|124028356|ref|YP_001013676.1|	-	0.028	12.9	0.5	0.032	12.8	0.4	1.0	1	0	0	1	1	1	0	Cse1
Ibs_toxin	PF13956.1	gi|124028356|ref|YP_001013676.1|	-	0.034	13.9	1.2	0.052	13.3	0.8	1.3	1	0	0	1	1	1	0	Toxin	Ibs,	type	I	toxin-antitoxin	system
Phage_connect_1	PF05135.8	gi|124028356|ref|YP_001013676.1|	-	0.14	12.2	1.0	0.22	11.7	0.7	1.3	1	0	0	1	1	1	0	Phage	gp6-like	head-tail	connector	protein
CLP_protease	PF00574.18	gi|124028356|ref|YP_001013676.1|	-	0.17	11.5	0.6	0.2	11.2	0.4	1.1	1	0	0	1	1	1	0	Clp	protease
ABC2_membrane_4	PF12730.2	gi|124028357|ref|YP_001013677.1|	-	0.00026	20.2	16.1	0.00048	19.3	11.1	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
CcmB	PF03379.8	gi|124028357|ref|YP_001013677.1|	-	0.0048	16.1	12.6	0.0058	15.8	8.7	1.2	1	0	0	1	1	1	1	CcmB	protein
ABC2_membrane_3	PF12698.2	gi|124028357|ref|YP_001013677.1|	-	1.1	8.2	17.4	1.6	7.6	11.9	1.5	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3948	PF13134.1	gi|124028357|ref|YP_001013677.1|	-	2.3	7.7	12.7	0.31	10.5	0.8	3.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3948)
PsaM	PF07465.8	gi|124028357|ref|YP_001013677.1|	-	9.8	5.8	15.8	0.14	11.7	2.2	3.3	3	1	0	3	3	3	0	Photosystem	I	protein	M	(PsaM)
MitoNEET_N	PF10660.4	gi|124028358|ref|YP_001013678.1|	-	0.47	10.3	1.9	0.75	9.7	1.0	1.6	1	1	0	1	1	1	0	Iron-containing	outer	mitochondrial	membrane	protein	N-terminus
Cytochrom_C_asm	PF01578.15	gi|124028359|ref|YP_001013679.1|	-	1e-23	84.0	4.6	2e-23	83.0	3.2	1.5	1	0	0	1	1	1	1	Cytochrome	C	assembly	protein
ABC_tran	PF00005.22	gi|124028360|ref|YP_001013680.1|	-	2.4e-26	92.6	0.0	3.1e-26	92.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|124028360|ref|YP_001013680.1|	-	2.2e-13	50.8	0.0	4.4e-07	30.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|124028360|ref|YP_001013680.1|	-	1.6e-05	25.3	0.0	1.9e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|124028360|ref|YP_001013680.1|	-	3.5e-05	23.8	0.4	8.5e-05	22.6	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|124028360|ref|YP_001013680.1|	-	8.2e-05	22.0	0.0	0.00016	21.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|124028360|ref|YP_001013680.1|	-	8.5e-05	22.7	0.0	0.00027	21.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|124028360|ref|YP_001013680.1|	-	0.0002	21.0	0.1	0.00054	19.6	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_15	PF13175.1	gi|124028360|ref|YP_001013680.1|	-	0.00023	20.3	0.0	0.011	14.7	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|124028360|ref|YP_001013680.1|	-	0.00046	19.6	0.0	0.0015	17.9	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|124028360|ref|YP_001013680.1|	-	0.00061	19.4	0.0	0.0012	18.4	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_17	PF13207.1	gi|124028360|ref|YP_001013680.1|	-	0.00079	20.2	0.3	0.0015	19.3	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|124028360|ref|YP_001013680.1|	-	0.001	18.7	0.0	0.0015	18.2	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|124028360|ref|YP_001013680.1|	-	0.0011	18.5	0.0	0.0022	17.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|124028360|ref|YP_001013680.1|	-	0.0025	17.6	0.1	0.005	16.7	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|124028360|ref|YP_001013680.1|	-	0.0031	17.4	0.0	0.0051	16.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|124028360|ref|YP_001013680.1|	-	0.0034	17.6	0.2	0.0069	16.6	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|124028360|ref|YP_001013680.1|	-	0.0049	16.6	0.1	0.0074	16.0	0.1	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
T2SE	PF00437.15	gi|124028360|ref|YP_001013680.1|	-	0.0062	15.4	0.0	0.0075	15.1	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
SMC_N	PF02463.14	gi|124028360|ref|YP_001013680.1|	-	0.0067	15.6	0.0	0.022	14.0	0.0	1.7	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
UPF0079	PF02367.12	gi|124028360|ref|YP_001013680.1|	-	0.0081	15.7	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
DUF258	PF03193.11	gi|124028360|ref|YP_001013680.1|	-	0.0096	15.1	0.0	0.014	14.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_13	PF13166.1	gi|124028360|ref|YP_001013680.1|	-	0.01	14.3	0.0	0.012	14.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.3	gi|124028360|ref|YP_001013680.1|	-	0.012	13.0	0.0	0.016	12.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_5	PF07728.9	gi|124028360|ref|YP_001013680.1|	-	0.015	15.0	0.1	0.032	13.9	0.1	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MutS_V	PF00488.16	gi|124028360|ref|YP_001013680.1|	-	0.017	14.5	0.0	0.027	13.9	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
AAA	PF00004.24	gi|124028360|ref|YP_001013680.1|	-	0.017	15.2	0.1	0.037	14.2	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|124028360|ref|YP_001013680.1|	-	0.019	14.4	0.0	0.052	12.9	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
AAA_14	PF13173.1	gi|124028360|ref|YP_001013680.1|	-	0.021	14.7	0.0	0.048	13.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|124028360|ref|YP_001013680.1|	-	0.024	14.0	0.0	0.035	13.5	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
cobW	PF02492.14	gi|124028360|ref|YP_001013680.1|	-	0.024	14.0	0.1	0.036	13.5	0.0	1.2	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|124028360|ref|YP_001013680.1|	-	0.026	14.0	0.0	0.04	13.3	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Mg_chelatase	PF01078.16	gi|124028360|ref|YP_001013680.1|	-	0.035	13.2	0.0	0.065	12.3	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Zeta_toxin	PF06414.7	gi|124028360|ref|YP_001013680.1|	-	0.049	12.7	0.0	0.07	12.2	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
Miro	PF08477.8	gi|124028360|ref|YP_001013680.1|	-	0.049	14.1	0.0	0.066	13.7	0.0	1.3	1	0	0	1	1	1	0	Miro-like	protein
ABC_ATPase	PF09818.4	gi|124028360|ref|YP_001013680.1|	-	0.054	12.0	0.3	0.16	10.5	0.1	1.7	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AFG1_ATPase	PF03969.11	gi|124028360|ref|YP_001013680.1|	-	0.089	11.5	0.0	1.2	7.8	0.0	2.0	2	0	0	2	2	2	0	AFG1-like	ATPase
NTPase_1	PF03266.10	gi|124028360|ref|YP_001013680.1|	-	0.089	12.4	0.0	0.2	11.3	0.0	1.5	2	0	0	2	2	1	0	NTPase
IstB_IS21	PF01695.12	gi|124028360|ref|YP_001013680.1|	-	0.1	12.0	0.0	1.4	8.3	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
SbcCD_C	PF13558.1	gi|124028360|ref|YP_001013680.1|	-	0.11	12.4	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Rad17	PF03215.10	gi|124028360|ref|YP_001013680.1|	-	0.13	10.9	0.0	0.15	10.7	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_24	PF13479.1	gi|124028360|ref|YP_001013680.1|	-	0.14	11.7	0.1	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|124028360|ref|YP_001013680.1|	-	0.17	10.7	0.1	0.3	9.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
SRPRB	PF09439.5	gi|124028360|ref|YP_001013680.1|	-	0.19	10.9	0.1	0.4	9.8	0.0	1.5	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Cytochrom_C_asm	PF01578.15	gi|124028361|ref|YP_001013681.1|	-	5.1e-22	78.4	17.9	5.1e-22	78.4	12.4	3.2	2	2	0	2	2	2	1	Cytochrome	C	assembly	protein
Thioredoxin	PF00085.15	gi|124028362|ref|YP_001013682.1|	-	2.2e-10	40.1	0.0	4.1e-10	39.2	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|124028362|ref|YP_001013682.1|	-	8.5e-09	35.5	0.1	7.1e-08	32.6	0.1	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
DsbD	PF02683.10	gi|124028362|ref|YP_001013682.1|	-	5e-06	26.2	25.8	5e-06	26.2	17.9	2.2	2	1	0	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Thioredoxin_3	PF13192.1	gi|124028362|ref|YP_001013682.1|	-	0.003	17.3	0.0	0.015	15.0	0.0	2.1	2	0	0	2	2	2	1	Thioredoxin	domain
Thioredoxin_8	PF13905.1	gi|124028362|ref|YP_001013682.1|	-	0.0067	16.5	0.0	0.019	15.0	0.0	1.7	1	1	0	1	1	1	1	Thioredoxin-like
Cytochrome_CBB3	PF13442.1	gi|124028362|ref|YP_001013682.1|	-	0.0089	16.1	0.0	0.023	14.8	0.0	1.7	1	1	0	1	1	1	1	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
DsbD_2	PF13386.1	gi|124028362|ref|YP_001013682.1|	-	0.01	15.5	28.6	0.015	15.0	6.1	2.4	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein	transmembrane	region
Redoxin	PF08534.5	gi|124028362|ref|YP_001013682.1|	-	0.16	11.5	0.0	0.32	10.5	0.0	1.5	1	0	0	1	1	1	0	Redoxin
Thioredoxin_9	PF14595.1	gi|124028362|ref|YP_001013682.1|	-	0.21	11.1	0.0	0.39	10.2	0.0	1.4	1	0	0	1	1	1	0	Thioredoxin
HTH_10	PF04967.7	gi|124028363|ref|YP_001013683.1|	-	7.2e-19	67.1	0.3	1.2e-18	66.4	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|124028363|ref|YP_001013683.1|	-	0.0013	18.0	0.1	0.0025	17.1	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.17	gi|124028363|ref|YP_001013683.1|	-	0.013	15.3	0.1	0.039	13.8	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix
HTH_AraC	PF00165.18	gi|124028363|ref|YP_001013683.1|	-	0.025	14.3	0.0	0.062	13.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
GntR	PF00392.16	gi|124028363|ref|YP_001013683.1|	-	0.05	13.0	0.3	0.13	11.7	0.1	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_23	PF13384.1	gi|124028363|ref|YP_001013683.1|	-	0.069	12.8	0.0	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_28	PF13518.1	gi|124028363|ref|YP_001013683.1|	-	0.13	12.2	0.0	0.32	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
CBS	PF00571.23	gi|124028364|ref|YP_001013684.1|	-	1.1e-16	60.3	1.2	9.1e-08	31.7	0.0	2.4	2	1	1	3	3	3	2	CBS	domain
DUF2276	PF10040.4	gi|124028365|ref|YP_001013685.1|	-	4.6e-18	65.5	0.1	8.4e-17	61.5	0.0	2.5	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2276)
MoaE	PF02391.12	gi|124028367|ref|YP_001013687.1|	-	9.5e-21	73.7	0.2	1.3e-20	73.3	0.1	1.2	1	0	0	1	1	1	1	MoaE	protein
SSV1_ORF_D-335	PF07935.6	gi|124028367|ref|YP_001013687.1|	-	0.023	14.4	0.0	0.043	13.5	0.0	1.4	1	0	0	1	1	1	0	ORF	D-335-like	protein
SfsA	PF03749.8	gi|124028369|ref|YP_001013689.1|	-	6.4e-42	143.4	0.0	7.7e-42	143.1	0.0	1.0	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein
Pantoate_transf	PF02548.10	gi|124028370|ref|YP_001013690.1|	-	1.5e-109	365.1	0.2	1.8e-109	364.9	0.1	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.1	gi|124028370|ref|YP_001013690.1|	-	5.8e-11	42.0	5.4	5.6e-10	38.8	3.8	2.3	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Peptidase_U32	PF01136.14	gi|124028370|ref|YP_001013690.1|	-	0.1	11.4	0.2	3.1	6.6	0.0	2.3	1	1	1	2	2	2	0	Peptidase	family	U32
ApbA_C	PF08546.6	gi|124028371|ref|YP_001013691.1|	-	4.3e-30	104.2	0.0	6e-30	103.8	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.11	gi|124028371|ref|YP_001013691.1|	-	7.2e-21	74.2	0.2	1.7e-20	72.9	0.2	1.6	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DAO	PF01266.19	gi|124028371|ref|YP_001013691.1|	-	1.1e-05	24.4	2.2	2e-05	23.6	1.5	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
ThiF	PF00899.16	gi|124028371|ref|YP_001013691.1|	-	6.1e-05	22.8	1.5	0.00011	21.9	1.0	1.4	1	0	0	1	1	1	1	ThiF	family
Pyr_redox_2	PF07992.9	gi|124028371|ref|YP_001013691.1|	-	0.00026	20.9	0.6	0.0004	20.3	0.4	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|124028371|ref|YP_001013691.1|	-	0.0012	17.9	2.5	0.0018	17.4	1.7	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.12	gi|124028371|ref|YP_001013691.1|	-	0.0055	15.8	0.8	0.0081	15.2	0.6	1.3	1	0	0	1	1	1	1	Thi4	family
F420_oxidored	PF03807.12	gi|124028371|ref|YP_001013691.1|	-	0.0095	16.3	0.8	0.14	12.6	0.4	2.5	2	1	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Lycopene_cycl	PF05834.7	gi|124028371|ref|YP_001013691.1|	-	0.0096	14.8	0.8	0.015	14.2	0.5	1.3	1	0	0	1	1	1	1	Lycopene	cyclase	protein
GIDA	PF01134.17	gi|124028371|ref|YP_001013691.1|	-	0.016	14.0	2.3	0.022	13.6	1.6	1.1	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
2-Hacid_dh_C	PF02826.14	gi|124028371|ref|YP_001013691.1|	-	0.021	13.9	0.2	0.038	13.1	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|124028371|ref|YP_001013691.1|	-	0.022	14.4	3.5	0.038	13.6	2.4	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.19	gi|124028371|ref|YP_001013691.1|	-	0.027	13.3	3.9	0.042	12.6	2.7	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox	PF00070.22	gi|124028371|ref|YP_001013691.1|	-	0.049	14.0	2.4	0.11	12.9	1.6	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_10	PF13460.1	gi|124028371|ref|YP_001013691.1|	-	0.051	13.5	1.3	0.12	12.4	0.9	1.6	1	0	0	1	1	1	0	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|124028371|ref|YP_001013691.1|	-	0.091	12.4	1.1	0.37	10.5	0.6	2.1	3	0	0	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
IlvN	PF07991.7	gi|124028371|ref|YP_001013691.1|	-	0.15	11.4	0.1	0.25	10.6	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
UDPG_MGDP_dh_N	PF03721.9	gi|124028371|ref|YP_001013691.1|	-	0.52	9.6	2.2	1.1	8.6	1.5	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_oxidored	PF12831.2	gi|124028371|ref|YP_001013691.1|	-	2.4	7.1	6.7	3.4	6.6	4.7	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
MarR_2	PF12802.2	gi|124028373|ref|YP_001013693.1|	-	2.1e-08	33.6	0.2	4.9e-08	32.5	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|124028373|ref|YP_001013693.1|	-	2.9e-07	30.1	0.3	6.5e-07	29.0	0.1	1.7	2	0	0	2	2	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|124028373|ref|YP_001013693.1|	-	2.5e-06	27.6	0.2	4.5e-06	26.8	0.2	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|124028373|ref|YP_001013693.1|	-	3.6e-06	26.5	0.7	1.2e-05	24.8	0.1	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2250	PF10007.4	gi|124028373|ref|YP_001013693.1|	-	1.5e-05	24.8	1.4	1.9e-05	24.4	0.1	1.8	2	1	0	2	2	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_29	PF13551.1	gi|124028373|ref|YP_001013693.1|	-	4.9e-05	23.4	0.2	9e-05	22.5	0.1	1.5	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|124028373|ref|YP_001013693.1|	-	9.3e-05	22.3	0.1	0.00021	21.2	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|124028373|ref|YP_001013693.1|	-	0.00052	20.0	0.1	0.0012	18.9	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
Sigma70_r4	PF04545.11	gi|124028373|ref|YP_001013693.1|	-	0.0042	16.3	0.1	0.0099	15.1	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|124028373|ref|YP_001013693.1|	-	0.0046	16.5	0.1	0.02	14.5	0.1	2.0	1	1	1	2	2	2	1	Homeodomain-like	domain
HTH_Tnp_ISL3	PF13542.1	gi|124028373|ref|YP_001013693.1|	-	0.011	14.8	0.1	0.025	13.7	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF4423	PF14394.1	gi|124028373|ref|YP_001013693.1|	-	0.013	15.0	0.1	0.019	14.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
GerE	PF00196.14	gi|124028373|ref|YP_001013693.1|	-	0.018	14.3	0.1	0.031	13.5	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_17	PF12728.2	gi|124028373|ref|YP_001013693.1|	-	0.023	14.9	1.4	0.35	11.1	0.2	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|124028373|ref|YP_001013693.1|	-	0.03	14.2	0.0	0.072	13.0	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.1	gi|124028373|ref|YP_001013693.1|	-	0.031	14.4	0.0	0.069	13.2	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|124028373|ref|YP_001013693.1|	-	0.036	13.4	0.2	0.07	12.5	0.2	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Arg_tRNA_synt_N	PF03485.11	gi|124028373|ref|YP_001013693.1|	-	0.051	14.1	0.1	4.7	7.8	0.0	2.3	1	1	1	2	2	2	0	Arginyl	tRNA	synthetase	N	terminal	domain
Sigma70_r4_2	PF08281.7	gi|124028373|ref|YP_001013693.1|	-	0.063	12.7	0.4	1.7	8.2	0.1	2.6	2	0	0	2	2	2	0	Sigma-70,	region	4
RuvB_C	PF05491.8	gi|124028373|ref|YP_001013693.1|	-	0.068	12.8	0.6	0.57	9.8	0.4	2.4	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_11	PF08279.7	gi|124028373|ref|YP_001013693.1|	-	0.076	12.6	0.1	0.15	11.7	0.1	1.5	1	0	0	1	1	1	0	HTH	domain
Soyouz_module	PF14313.1	gi|124028373|ref|YP_001013693.1|	-	0.15	11.6	0.0	0.33	10.5	0.0	1.6	1	0	0	1	1	1	0	N-terminal	region	of	Paramyxovirinae	phosphoprotein	(P)
GntR	PF00392.16	gi|124028373|ref|YP_001013693.1|	-	0.4	10.1	2.1	0.35	10.3	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
ACP_syn_III_C	PF08541.5	gi|124028374|ref|YP_001013694.1|	-	1.1e-11	44.5	0.0	1.2e-10	41.2	0.0	2.4	2	1	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
ACP_syn_III	PF08545.5	gi|124028374|ref|YP_001013694.1|	-	2.6e-05	23.7	2.3	3.2e-05	23.5	0.7	1.7	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
HMG_CoA_synt_C	PF08540.5	gi|124028374|ref|YP_001013694.1|	-	2.7e-05	23.8	0.0	0.003	17.1	0.0	2.2	1	1	1	2	2	2	2	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HMG_CoA_synt_N	PF01154.12	gi|124028374|ref|YP_001013694.1|	-	6.8e-05	22.4	0.0	9.4e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
Chal_sti_synt_N	PF00195.14	gi|124028374|ref|YP_001013694.1|	-	0.0078	15.4	0.1	0.018	14.2	0.0	1.6	2	0	0	2	2	2	1	Chalcone	and	stilbene	synthases,	N-terminal	domain
Thiolase_C	PF02803.13	gi|124028375|ref|YP_001013695.1|	-	3.1e-10	39.5	0.1	3.1e-10	39.5	0.1	2.0	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.18	gi|124028375|ref|YP_001013695.1|	-	3.5e-10	39.3	0.1	1.9e-07	30.3	0.0	2.2	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|124028375|ref|YP_001013695.1|	-	1.9e-06	27.4	0.3	0.0011	18.5	0.1	2.5	2	0	0	2	2	2	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ketoacyl-synt_C	PF02801.17	gi|124028375|ref|YP_001013695.1|	-	3.4e-05	23.6	1.3	0.013	15.3	0.0	3.3	3	0	0	3	3	3	1	Beta-ketoacyl	synthase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|124028375|ref|YP_001013695.1|	-	0.00094	18.7	5.2	0.0036	16.8	0.9	2.8	2	1	1	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
DUF35	PF01796.12	gi|124028376|ref|YP_001013696.1|	-	2.9e-16	59.4	2.6	4.2e-16	58.9	1.8	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|124028376|ref|YP_001013696.1|	-	3.9e-12	45.6	6.1	6.1e-12	45.0	4.2	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-ribbon_3	PF13248.1	gi|124028376|ref|YP_001013696.1|	-	0.0022	17.1	3.9	0.0033	16.5	2.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|124028376|ref|YP_001013696.1|	-	0.041	13.6	1.7	0.065	13.0	1.1	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF2082	PF09855.4	gi|124028376|ref|YP_001013696.1|	-	0.08	12.8	0.3	11	5.9	0.0	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Zn_Tnp_IS1595	PF12760.2	gi|124028376|ref|YP_001013696.1|	-	0.083	12.7	0.9	0.083	12.7	0.6	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124028376|ref|YP_001013696.1|	-	1.7	8.2	7.0	12	5.4	4.9	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|124028376|ref|YP_001013696.1|	-	6.6	6.7	8.1	65	3.6	5.6	2.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
Rubrerythrin	PF02915.12	gi|124028377|ref|YP_001013697.1|	-	6.2e-11	42.7	1.2	7.8e-11	42.4	0.9	1.1	1	0	0	1	1	1	1	Rubrerythrin
DUF2383	PF09537.5	gi|124028377|ref|YP_001013697.1|	-	4e-05	23.8	0.3	5e-05	23.5	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2383)
Ferritin	PF00210.19	gi|124028377|ref|YP_001013697.1|	-	0.0005	19.8	0.1	0.00069	19.3	0.0	1.3	1	0	0	1	1	1	1	Ferritin-like	domain
Mn_catalase	PF05067.7	gi|124028377|ref|YP_001013697.1|	-	0.0061	15.3	0.1	0.0061	15.3	0.1	1.0	1	0	0	1	1	1	1	Manganese	containing	catalase
COQ7	PF03232.8	gi|124028377|ref|YP_001013697.1|	-	0.025	14.0	0.2	0.037	13.5	0.1	1.3	1	1	0	1	1	1	0	Ubiquinone	biosynthesis	protein	COQ7
DUF2202	PF09968.4	gi|124028377|ref|YP_001013697.1|	-	0.11	12.1	0.0	0.12	11.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	domain	(DUF2202)
HTH_20	PF12840.2	gi|124028377|ref|YP_001013697.1|	-	0.24	11.2	1.5	1.9	8.3	1.0	2.2	1	1	0	1	1	1	0	Helix-turn-helix	domain
RHH_1	PF01402.16	gi|124028377|ref|YP_001013697.1|	-	2.9	7.9	7.6	28	4.8	0.4	3.2	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
HMG-CoA_red	PF00368.13	gi|124028378|ref|YP_001013698.1|	-	2.9e-146	486.9	0.2	3.4e-146	486.6	0.1	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Antitoxin-MazE	PF04014.13	gi|124028380|ref|YP_001013700.1|	-	8.8e-08	31.7	2.5	1.7e-07	30.7	1.7	1.5	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
MraZ	PF02381.13	gi|124028380|ref|YP_001013700.1|	-	0.0037	16.9	0.6	0.0068	16.1	0.0	1.6	2	0	0	2	2	2	1	MraZ	protein
ABC_tran	PF00005.22	gi|124028382|ref|YP_001013702.1|	-	1.6e-31	109.4	0.0	2.4e-31	108.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|124028382|ref|YP_001013702.1|	-	6.6e-24	84.0	1.4	1.1e-23	83.2	1.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|124028382|ref|YP_001013702.1|	-	3.7e-12	46.8	0.2	3.3e-10	40.4	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|124028382|ref|YP_001013702.1|	-	5.6e-06	25.7	0.3	9.1e-05	21.7	0.1	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|124028382|ref|YP_001013702.1|	-	0.001	18.5	0.0	0.0089	15.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|124028382|ref|YP_001013702.1|	-	0.0038	17.2	0.1	0.0068	16.4	0.0	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|124028382|ref|YP_001013702.1|	-	0.0067	15.5	1.5	0.025	13.6	0.5	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|124028382|ref|YP_001013702.1|	-	0.011	15.9	1.7	0.29	11.2	1.2	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|124028382|ref|YP_001013702.1|	-	0.011	15.9	0.0	0.19	12.0	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|124028382|ref|YP_001013702.1|	-	0.014	15.2	0.0	0.03	14.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|124028382|ref|YP_001013702.1|	-	0.019	14.4	0.0	0.042	13.3	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PRK	PF00485.13	gi|124028382|ref|YP_001013702.1|	-	0.025	14.1	0.0	0.035	13.6	0.0	1.2	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF258	PF03193.11	gi|124028382|ref|YP_001013702.1|	-	0.034	13.3	0.0	0.056	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA	PF00004.24	gi|124028382|ref|YP_001013702.1|	-	0.045	13.9	0.1	1.3	9.2	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|124028382|ref|YP_001013702.1|	-	0.095	12.1	0.0	0.64	9.3	0.0	1.8	1	1	0	2	2	2	0	AAA-like	domain
AAA_13	PF13166.1	gi|124028382|ref|YP_001013702.1|	-	0.11	10.8	0.1	0.76	8.1	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|124028382|ref|YP_001013702.1|	-	0.15	12.2	0.0	0.32	11.2	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Rad17	PF03215.10	gi|124028382|ref|YP_001013702.1|	-	0.17	10.4	0.0	0.26	9.9	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
Dict-STAT-coil	PF09267.5	gi|124028383|ref|YP_001013703.1|	-	0.15	12.2	0.1	2.7	8.2	0.0	2.2	2	0	0	2	2	2	0	Dictyostelium	STAT,	coiled	coil
CDP-OH_P_transf	PF01066.16	gi|124028384|ref|YP_001013704.1|	-	1.7e-13	50.7	2.8	2.3e-13	50.2	1.6	1.4	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
NurA	PF09376.5	gi|124028385|ref|YP_001013705.1|	-	2.1e-14	53.5	0.0	3.5e-14	52.9	0.0	1.3	1	0	0	1	1	1	1	NurA	domain
MLTD_N	PF06474.7	gi|124028385|ref|YP_001013705.1|	-	0.54	10.4	0.0	0.54	10.4	0.0	2.6	3	0	0	3	3	3	0	MltD	lipid	attachment	motif
DUF87	PF01935.12	gi|124028386|ref|YP_001013706.1|	-	4e-23	82.4	0.0	6.6e-23	81.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|124028386|ref|YP_001013706.1|	-	2e-15	57.0	0.0	2.9e-15	56.5	0.0	1.2	1	0	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|124028386|ref|YP_001013706.1|	-	0.00071	18.2	0.0	0.093	11.3	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|124028386|ref|YP_001013706.1|	-	0.026	13.9	0.1	0.79	9.1	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
Lactamase_B	PF00753.22	gi|124028387|ref|YP_001013707.1|	-	1.5e-20	73.6	0.4	2.5e-20	72.9	0.3	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Flavodoxin_1	PF00258.20	gi|124028387|ref|YP_001013707.1|	-	9.1e-07	28.9	0.0	1.7e-06	28.0	0.0	1.5	1	0	0	1	1	1	1	Flavodoxin
Lactamase_B_2	PF12706.2	gi|124028387|ref|YP_001013707.1|	-	0.00033	20.2	0.1	0.00054	19.5	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|124028387|ref|YP_001013707.1|	-	0.017	14.7	0.0	0.027	14.1	0.0	1.2	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Peripla_BP_6	PF13458.1	gi|124028387|ref|YP_001013707.1|	-	0.075	12.3	0.1	0.17	11.2	0.0	1.6	1	1	0	1	1	1	0	Periplasmic	binding	protein
PAPS_reduct	PF01507.14	gi|124028388|ref|YP_001013708.1|	-	5.2e-37	127.3	0.0	7.1e-37	126.8	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
NAD_synthase	PF02540.12	gi|124028388|ref|YP_001013708.1|	-	3.1e-05	23.0	0.0	4.9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	NAD	synthase
Asn_synthase	PF00733.16	gi|124028388|ref|YP_001013708.1|	-	0.00016	21.2	0.0	0.00026	20.5	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|124028388|ref|YP_001013708.1|	-	0.00097	18.4	0.0	0.003	16.8	0.0	1.8	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Arginosuc_synth	PF00764.14	gi|124028388|ref|YP_001013708.1|	-	0.0033	16.5	0.0	0.0044	16.1	0.0	1.1	1	0	0	1	1	1	1	Arginosuccinate	synthase
ATP_bind_3	PF01171.15	gi|124028388|ref|YP_001013708.1|	-	0.0034	16.9	0.0	0.005	16.3	0.0	1.2	1	0	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|124028388|ref|YP_001013708.1|	-	0.21	10.1	0.0	0.34	9.4	0.0	1.3	1	0	0	1	1	1	0	tRNA	methyl	transferase
Leucyl-specific	PF14795.1	gi|124028389|ref|YP_001013709.1|	-	0.062	13.1	0.6	0.15	11.9	0.2	1.8	1	1	1	2	2	2	0	Leucine-tRNA	synthetase-specific	domain
Hpt	PF01627.18	gi|124028389|ref|YP_001013709.1|	-	4.1	7.4	6.6	2.2	8.3	1.2	2.1	1	1	1	2	2	2	0	Hpt	domain
NurA	PF09376.5	gi|124028390|ref|YP_001013710.1|	-	3e-12	46.5	0.0	5.4e-12	45.7	0.0	1.4	1	1	0	1	1	1	1	NurA	domain
PBP	PF01161.15	gi|124028391|ref|YP_001013711.1|	-	7.2e-32	110.2	0.0	8.9e-32	109.9	0.0	1.1	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Phage_integrase	PF00589.17	gi|124028392|ref|YP_001013712.1|	-	2.1e-33	115.3	0.0	4.2e-33	114.4	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|124028392|ref|YP_001013712.1|	-	1.2e-11	44.5	1.4	9.6e-10	38.4	0.1	3.5	3	1	1	4	4	4	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|124028392|ref|YP_001013712.1|	-	1.5e-09	38.0	0.0	8.9e-08	32.3	0.0	2.5	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Integrase_1	PF12835.2	gi|124028392|ref|YP_001013712.1|	-	0.0066	16.2	0.1	0.017	14.9	0.0	1.6	1	1	0	1	1	1	1	Integrase
HTH_20	PF12840.2	gi|124028392|ref|YP_001013712.1|	-	0.07	12.9	1.2	17	5.2	0.0	3.1	3	0	0	3	3	3	0	Helix-turn-helix	domain
E3_binding	PF02817.12	gi|124028392|ref|YP_001013712.1|	-	0.11	12.2	0.1	15	5.3	0.0	2.8	2	0	0	2	2	2	0	e3	binding	domain
HTH_8	PF02954.14	gi|124028392|ref|YP_001013712.1|	-	0.15	11.6	1.3	0.38	10.3	0.9	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
AA_kinase	PF00696.23	gi|124028393|ref|YP_001013713.1|	-	2.9e-14	53.1	0.0	4.9e-14	52.4	0.0	1.3	1	0	0	1	1	1	1	Amino	acid	kinase	family
UPF0278	PF08745.6	gi|124028394|ref|YP_001013714.1|	-	1.5e-66	223.6	0.1	1.8e-66	223.3	0.1	1.0	1	0	0	1	1	1	1	UPF0278	family
DUF429	PF04250.8	gi|124028394|ref|YP_001013714.1|	-	0.061	12.5	0.4	0.076	12.2	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF429)
PIN_4	PF13638.1	gi|124028394|ref|YP_001013714.1|	-	0.071	13.2	0.0	0.25	11.4	0.0	2.0	1	1	0	1	1	1	0	PIN	domain
CRISPR_Cse2	PF09485.5	gi|124028394|ref|YP_001013714.1|	-	0.35	10.8	7.3	3.6	7.6	0.4	2.9	2	1	0	2	2	2	0	CRISPR-associated	protein	Cse2	(CRISPR_cse2)
FliP	PF00813.15	gi|124028395|ref|YP_001013715.1|	-	0.32	10.6	6.0	1.7	8.3	2.3	2.4	2	1	1	3	3	3	0	FliP	family
DNA_ligase_A_M	PF01068.16	gi|124028396|ref|YP_001013716.1|	-	3.9e-16	59.0	0.0	8.6e-16	57.9	0.0	1.5	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
RNA_ligase	PF09414.5	gi|124028396|ref|YP_001013716.1|	-	3.1e-07	30.3	0.1	9.9e-07	28.7	0.0	1.8	1	1	0	1	1	1	1	RNA	ligase
Oxidored_nitro	PF00148.14	gi|124028396|ref|YP_001013716.1|	-	0.013	14.1	0.2	0.02	13.5	0.1	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
YbjQ_1	PF01906.12	gi|124028397|ref|YP_001013717.1|	-	4.5e-13	49.5	0.1	3.3e-11	43.5	0.1	2.0	1	1	0	1	1	1	1	Putative	heavy-metal-binding
FeoA	PF04023.9	gi|124028397|ref|YP_001013717.1|	-	0.0059	16.5	0.2	0.01	15.7	0.2	1.5	1	1	0	1	1	1	1	FeoA	domain
SeleniumBinding	PF11524.3	gi|124028397|ref|YP_001013717.1|	-	0.034	14.2	0.0	0.045	13.8	0.0	1.2	1	0	0	1	1	1	0	Selenium	binding	protein
DUF4258	PF14076.1	gi|124028398|ref|YP_001013718.1|	-	9.4e-11	41.5	0.7	1.6e-10	40.8	0.5	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4258)
DUF1441	PF07278.6	gi|124028398|ref|YP_001013718.1|	-	0.079	12.6	0.1	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
AFOR_C	PF01314.13	gi|124028399|ref|YP_001013719.1|	-	2.7e-98	329.1	0.0	3.6e-98	328.7	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|124028399|ref|YP_001013719.1|	-	4.7e-71	238.3	0.1	7.9e-71	237.5	0.1	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
DUF457	PF04307.9	gi|124028400|ref|YP_001013720.1|	-	8.7e-19	67.3	12.3	1.2e-18	66.9	8.5	1.2	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
adh_short	PF00106.20	gi|124028401|ref|YP_001013721.1|	-	1.8e-37	128.8	1.6	2.6e-37	128.3	1.1	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|124028401|ref|YP_001013721.1|	-	1.3e-32	113.5	0.1	1.6e-32	113.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|124028401|ref|YP_001013721.1|	-	8.8e-17	61.3	0.4	2.7e-16	59.7	0.2	1.6	1	1	1	2	2	2	1	KR	domain
Epimerase	PF01370.16	gi|124028401|ref|YP_001013721.1|	-	3.1e-05	23.5	0.2	0.00025	20.5	0.2	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
DUF1776	PF08643.5	gi|124028401|ref|YP_001013721.1|	-	0.001	18.2	0.0	0.013	14.6	0.0	2.0	1	1	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
Eno-Rase_NADH_b	PF12242.3	gi|124028401|ref|YP_001013721.1|	-	0.0017	18.0	0.0	0.0017	18.0	0.0	1.7	2	0	0	2	2	2	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
FKBP_C	PF00254.23	gi|124028403|ref|YP_001013723.1|	-	4.5e-14	52.2	0.1	1.2e-13	50.8	0.0	1.8	2	0	0	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
UPF0113	PF03657.8	gi|124028404|ref|YP_001013724.1|	-	6.1e-20	71.5	0.0	7.5e-20	71.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0113)
Nol1_Nop2_Fmu	PF01189.12	gi|124028405|ref|YP_001013725.1|	-	5.7e-51	173.5	0.0	6.9e-51	173.2	0.0	1.0	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
MTS	PF05175.9	gi|124028405|ref|YP_001013725.1|	-	1.5e-11	43.9	0.0	2.4e-11	43.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|124028405|ref|YP_001013725.1|	-	2.3e-11	43.4	0.0	4.8e-11	42.4	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|124028405|ref|YP_001013725.1|	-	1.2e-09	38.2	0.2	2e-09	37.5	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028405|ref|YP_001013725.1|	-	2.5e-07	30.9	0.0	6.9e-07	29.5	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124028405|ref|YP_001013725.1|	-	6e-07	30.0	0.1	1.1e-06	29.1	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|124028405|ref|YP_001013725.1|	-	2.6e-05	23.9	0.0	3.8e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_4	PF02390.12	gi|124028405|ref|YP_001013725.1|	-	0.00013	21.1	0.0	0.00049	19.2	0.0	1.8	2	0	0	2	2	2	1	Putative	methyltransferase
GidB	PF02527.10	gi|124028405|ref|YP_001013725.1|	-	0.00051	19.2	0.0	0.00093	18.3	0.0	1.3	1	0	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Methyltransf_15	PF09445.5	gi|124028405|ref|YP_001013725.1|	-	0.012	15.1	0.0	0.019	14.4	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_11	PF08241.7	gi|124028405|ref|YP_001013725.1|	-	0.018	15.4	0.0	0.039	14.4	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|124028405|ref|YP_001013725.1|	-	0.04	13.0	0.0	0.088	11.9	0.0	1.5	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|124028405|ref|YP_001013725.1|	-	0.11	13.0	0.0	0.25	11.8	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
CTP_transf_2	PF01467.21	gi|124028406|ref|YP_001013726.1|	-	6.4e-18	65.2	0.0	7.8e-18	65.0	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase
ATP-sulfurylase	PF01747.12	gi|124028406|ref|YP_001013726.1|	-	0.067	12.5	0.0	1.9	7.7	0.0	2.1	2	0	0	2	2	2	0	ATP-sulfurylase
RTC	PF01137.16	gi|124028407|ref|YP_001013727.1|	-	1.3e-80	269.4	0.0	1.7e-80	269.0	0.0	1.1	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.8	gi|124028407|ref|YP_001013727.1|	-	4.9e-31	106.7	0.1	8.2e-31	106.0	0.0	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
MMR_HSR1	PF01926.18	gi|124028408|ref|YP_001013728.1|	-	4.6e-16	58.8	0.0	1.2e-15	57.4	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
NOG1	PF06858.9	gi|124028408|ref|YP_001013728.1|	-	6.3e-10	38.7	0.0	1.5e-09	37.5	0.0	1.7	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
FeoB_N	PF02421.13	gi|124028408|ref|YP_001013728.1|	-	2.8e-09	36.4	0.1	8.5e-09	34.8	0.0	1.9	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|124028408|ref|YP_001013728.1|	-	2.3e-08	33.6	0.0	6.7e-06	25.6	0.0	2.4	1	1	1	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
ArgK	PF03308.11	gi|124028408|ref|YP_001013728.1|	-	5.5e-06	25.3	0.1	0.023	13.4	0.0	2.3	2	0	0	2	2	2	2	ArgK	protein
SRPRB	PF09439.5	gi|124028408|ref|YP_001013728.1|	-	0.0011	18.1	0.0	0.0018	17.5	0.0	1.3	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
ATP_bind_1	PF03029.12	gi|124028408|ref|YP_001013728.1|	-	0.0026	17.3	0.0	1	8.8	0.0	2.5	1	1	1	2	2	2	2	Conserved	hypothetical	ATP	binding	protein
AAA_16	PF13191.1	gi|124028408|ref|YP_001013728.1|	-	0.0092	15.9	0.3	0.029	14.3	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
Miro	PF08477.8	gi|124028408|ref|YP_001013728.1|	-	0.015	15.8	0.0	0.025	15.0	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_33	PF13671.1	gi|124028408|ref|YP_001013728.1|	-	0.017	14.9	0.6	0.086	12.7	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|124028408|ref|YP_001013728.1|	-	0.024	15.4	2.6	0.093	13.5	0.0	2.6	2	2	0	2	2	2	0	AAA	domain
Arf	PF00025.16	gi|124028408|ref|YP_001013728.1|	-	0.029	13.6	0.0	0.37	10.0	0.0	2.2	1	1	0	1	1	1	0	ADP-ribosylation	factor	family
AAA_28	PF13521.1	gi|124028408|ref|YP_001013728.1|	-	0.031	14.2	0.0	0.1	12.5	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
CbiA	PF01656.18	gi|124028408|ref|YP_001013728.1|	-	0.036	13.4	3.6	0.28	10.5	0.1	2.8	1	1	0	3	3	3	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_19	PF13245.1	gi|124028408|ref|YP_001013728.1|	-	0.055	13.2	1.8	0.33	10.7	0.1	2.7	2	1	0	2	2	2	0	Part	of	AAA	domain
KTI12	PF08433.5	gi|124028408|ref|YP_001013728.1|	-	0.056	12.6	0.4	0.12	11.5	0.0	1.8	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
Dynamin_N	PF00350.18	gi|124028408|ref|YP_001013728.1|	-	0.067	13.0	0.2	2.4	7.9	0.1	2.4	1	1	1	2	2	2	0	Dynamin	family
AAA_25	PF13481.1	gi|124028408|ref|YP_001013728.1|	-	0.07	12.5	2.1	2.2	7.6	0.1	3.1	1	1	2	3	3	3	0	AAA	domain
AAA_18	PF13238.1	gi|124028408|ref|YP_001013728.1|	-	0.085	13.1	0.3	0.39	11.0	0.0	2.3	2	1	1	3	3	2	0	AAA	domain
CPT	PF07931.7	gi|124028408|ref|YP_001013728.1|	-	0.091	12.3	0.0	3.1	7.3	0.0	2.3	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
cobW	PF02492.14	gi|124028408|ref|YP_001013728.1|	-	0.15	11.5	0.2	1.9	7.9	0.0	2.3	1	1	1	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.7	gi|124028408|ref|YP_001013728.1|	-	0.48	9.4	2.8	0.41	9.7	0.1	2.2	2	1	1	3	3	3	0	Zeta	toxin
TF_Zn_Ribbon	PF08271.7	gi|124028409|ref|YP_001013729.1|	-	9.5e-12	44.0	0.1	2.2e-11	42.9	0.1	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|124028409|ref|YP_001013729.1|	-	2.3e-05	23.7	0.1	3.6e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
Sigma70_r4	PF04545.11	gi|124028409|ref|YP_001013729.1|	-	0.00012	21.3	2.2	0.00018	20.7	0.5	2.1	2	1	0	2	2	2	1	Sigma-70,	region	4
zf-ribbon_3	PF13248.1	gi|124028409|ref|YP_001013729.1|	-	0.0017	17.4	1.6	0.0063	15.6	1.2	1.8	1	1	0	1	1	1	1	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|124028409|ref|YP_001013729.1|	-	0.0018	18.5	0.2	0.004	17.4	0.1	1.6	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Ribosomal_S27e	PF01667.12	gi|124028409|ref|YP_001013729.1|	-	0.0023	17.4	0.2	0.0046	16.4	0.2	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S27
Zn_Tnp_IS1595	PF12760.2	gi|124028409|ref|YP_001013729.1|	-	0.0085	15.8	1.8	0.0085	15.8	0.2	1.7	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
Desulfoferrod_N	PF06397.7	gi|124028409|ref|YP_001013729.1|	-	0.039	13.3	1.0	0.079	12.3	0.7	1.5	1	0	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
OrfB_Zn_ribbon	PF07282.6	gi|124028409|ref|YP_001013729.1|	-	0.042	13.5	0.1	0.1	12.2	0.1	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|124028409|ref|YP_001013729.1|	-	0.091	12.5	0.1	0.18	11.6	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TerY-C	PF15616.1	gi|124028409|ref|YP_001013729.1|	-	0.17	11.8	0.6	0.34	10.8	0.4	1.4	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Sigma70_r4_2	PF08281.7	gi|124028409|ref|YP_001013729.1|	-	0.3	10.5	2.2	6.5	6.3	0.7	2.6	2	0	0	2	2	2	0	Sigma-70,	region	4
zinc_ribbon_2	PF13240.1	gi|124028409|ref|YP_001013729.1|	-	0.43	10.1	2.2	1.9	8.0	1.6	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Proteasome	PF00227.21	gi|124028410|ref|YP_001013730.1|	-	2.2e-53	180.4	1.4	2.5e-53	180.2	1.0	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Endonuclease_5	PF04493.9	gi|124028411|ref|YP_001013731.1|	-	7.7e-43	146.2	0.0	8.9e-43	146.0	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	V
DUF1219	PF06755.7	gi|124028411|ref|YP_001013731.1|	-	0.12	11.9	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1219)
Fe-ADH_2	PF13685.1	gi|124028412|ref|YP_001013732.1|	-	5.4e-64	215.8	0.0	6.5e-64	215.6	0.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|124028412|ref|YP_001013732.1|	-	6.5e-25	87.5	0.6	1.9e-24	86.0	0.4	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|124028412|ref|YP_001013732.1|	-	5.6e-12	45.1	0.2	9.9e-11	41.0	0.1	2.5	1	1	0	1	1	1	1	3-dehydroquinate	synthase
Proteasome	PF00227.21	gi|124028413|ref|YP_001013733.1|	-	7.8e-56	188.3	0.4	8.8e-56	188.2	0.3	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Beta-Casp	PF10996.3	gi|124028414|ref|YP_001013734.1|	-	5.4e-33	113.6	0.0	1.6e-32	112.0	0.0	1.9	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|124028414|ref|YP_001013734.1|	-	2.6e-26	92.4	0.7	5.4e-26	91.4	0.5	1.5	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|124028414|ref|YP_001013734.1|	-	2.7e-14	52.7	0.0	9.5e-14	50.9	0.0	2.1	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|124028414|ref|YP_001013734.1|	-	4.6e-10	39.3	0.4	2.3e-09	37.1	0.1	2.2	3	0	0	3	3	3	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|124028414|ref|YP_001013734.1|	-	0.00074	19.2	0.2	0.0031	17.2	0.0	2.1	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_1	PF00013.24	gi|124028414|ref|YP_001013734.1|	-	0.15	11.6	0.1	0.15	11.6	0.1	2.4	2	0	0	2	2	2	0	KH	domain
PUA	PF01472.15	gi|124028415|ref|YP_001013735.1|	-	5.1e-17	61.3	0.0	7.2e-17	60.8	0.0	1.2	1	0	0	1	1	1	1	PUA	domain
DUF1947	PF09183.5	gi|124028415|ref|YP_001013735.1|	-	0.0023	17.6	0.0	0.0044	16.7	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
LSM	PF01423.17	gi|124028416|ref|YP_001013736.1|	-	3.1e-21	74.6	0.2	3.4e-21	74.5	0.1	1.0	1	0	0	1	1	1	1	LSM	domain
Ribosomal_L37e	PF01907.14	gi|124028417|ref|YP_001013737.1|	-	5.5e-26	90.1	9.4	6.2e-26	89.9	6.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DZR	PF12773.2	gi|124028417|ref|YP_001013737.1|	-	0.0042	16.8	0.6	0.0055	16.5	0.4	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|124028417|ref|YP_001013737.1|	-	0.0059	16.2	2.2	0.0091	15.6	1.5	1.4	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|124028417|ref|YP_001013737.1|	-	0.065	13.1	1.3	0.49	10.3	0.0	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
Mu-like_Com	PF10122.4	gi|124028417|ref|YP_001013737.1|	-	0.11	11.5	2.9	0.073	12.1	1.0	1.5	1	1	0	1	1	1	0	Mu-like	prophage	protein	Com
zf-ribbon_3	PF13248.1	gi|124028417|ref|YP_001013737.1|	-	0.14	11.4	6.4	0.62	9.3	4.5	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|124028417|ref|YP_001013737.1|	-	0.17	11.7	1.9	0.26	11.1	1.3	1.4	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF2752	PF10825.3	gi|124028417|ref|YP_001013737.1|	-	0.22	11.5	4.7	3.5	7.7	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2752)
Zn_Tnp_IS1595	PF12760.2	gi|124028417|ref|YP_001013737.1|	-	0.37	10.6	7.3	2.9	7.7	5.1	2.0	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124028417|ref|YP_001013737.1|	-	0.43	10.1	7.6	0.56	9.7	0.3	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124028417|ref|YP_001013737.1|	-	0.58	9.7	6.0	2.2	7.8	4.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF2082	PF09855.4	gi|124028417|ref|YP_001013737.1|	-	0.71	9.7	2.7	1.8	8.4	0.1	2.1	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-FPG_IleRS	PF06827.9	gi|124028417|ref|YP_001013737.1|	-	1.3	8.7	5.4	2.7	7.7	3.6	1.7	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
UPF0547	PF10571.4	gi|124028417|ref|YP_001013737.1|	-	2.3	8.0	5.8	7.4	6.3	0.5	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-HIT	PF04438.11	gi|124028417|ref|YP_001013737.1|	-	3.3	7.4	6.7	3.6	7.3	2.8	2.0	1	1	1	2	2	2	0	HIT	zinc	finger
Ribosomal_L32p	PF01783.18	gi|124028417|ref|YP_001013737.1|	-	4	7.7	9.6	5.6	7.2	5.3	1.9	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
zf-ISL3	PF14690.1	gi|124028417|ref|YP_001013737.1|	-	8.6	6.4	8.6	83	3.3	6.0	2.1	1	1	0	1	1	1	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RNA_pol_Rpb5_C	PF01191.14	gi|124028418|ref|YP_001013738.1|	-	3.4e-32	109.8	0.0	3.9e-32	109.6	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
Imm1	PF14430.1	gi|124028418|ref|YP_001013738.1|	-	0.096	12.8	0.1	0.19	11.8	0.0	1.5	2	0	0	2	2	2	0	Immunity	protein	Imm1
RNA_pol_Rpb2_6	PF00562.23	gi|124028419|ref|YP_001013739.1|	-	5.7e-129	430.2	0.0	7.7e-129	429.7	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.10	gi|124028419|ref|YP_001013739.1|	-	1.5e-51	174.1	0.0	2.3e-51	173.6	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.9	gi|124028419|ref|YP_001013739.1|	-	1.1e-30	106.4	0.1	1.9e-30	105.7	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.11	gi|124028419|ref|YP_001013739.1|	-	1.1e-29	101.9	0.0	1.3e-28	98.5	0.0	2.3	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_7	PF04560.15	gi|124028419|ref|YP_001013739.1|	-	1.2e-27	95.9	0.0	3.4e-27	94.5	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.8	gi|124028419|ref|YP_001013739.1|	-	6.2e-21	73.9	0.2	2e-20	72.3	0.1	2.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.12	gi|124028419|ref|YP_001013739.1|	-	7e-15	54.7	0.8	1.4e-14	53.7	0.5	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb1_1	PF04997.7	gi|124028420|ref|YP_001013740.1|	-	9e-91	304.6	0.0	8.7e-90	301.3	0.0	2.0	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|124028420|ref|YP_001013740.1|	-	3.7e-71	238.4	0.0	6.2e-71	237.6	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.13	gi|124028420|ref|YP_001013740.1|	-	4.8e-39	133.6	0.0	7.7e-39	132.9	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.12	gi|124028420|ref|YP_001013740.1|	-	6.9e-30	102.9	0.0	1.4e-29	101.9	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.12	gi|124028420|ref|YP_001013740.1|	-	1.2e-28	100.1	0.0	1.9e-28	99.4	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
Rpr2	PF04032.11	gi|124028420|ref|YP_001013740.1|	-	0.089	12.6	0.1	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Zn-ribbon_8	PF09723.5	gi|124028420|ref|YP_001013740.1|	-	0.17	11.8	2.7	2.1	8.3	0.0	3.0	3	0	0	3	3	3	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|124028420|ref|YP_001013740.1|	-	0.23	11.3	3.2	13	5.7	2.2	2.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|124028420|ref|YP_001013740.1|	-	0.36	10.3	7.2	4	7.0	0.2	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|124028420|ref|YP_001013740.1|	-	1.7	8.4	6.0	0.92	9.2	0.1	2.5	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
RNA_pol_Rpb1_5	PF04998.12	gi|124028421|ref|YP_001013741.1|	-	2.8e-52	177.6	0.1	3.8e-52	177.2	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
DnaG_DnaB_bind	PF08278.6	gi|124028421|ref|YP_001013741.1|	-	0.008	16.3	0.2	0.034	14.3	0.2	2.0	2	0	0	2	2	2	1	DNA	primase	DnaG	DnaB-binding
PPP5	PF08321.7	gi|124028421|ref|YP_001013741.1|	-	0.083	12.9	0.4	0.21	11.6	0.3	1.6	1	0	0	1	1	1	0	PPP5	TPR	repeat	region
Cation_ATPase_N	PF00690.21	gi|124028421|ref|YP_001013741.1|	-	0.13	11.7	0.0	0.41	10.1	0.0	1.8	1	0	0	1	1	1	0	Cation	transporter/ATPase,	N-terminus
Ribosomal_L7Ae	PF01248.21	gi|124028422|ref|YP_001013742.1|	-	3.6e-21	74.4	0.0	4.1e-21	74.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
KH_2	PF07650.12	gi|124028423|ref|YP_001013743.1|	-	9.5e-18	63.5	4.8	6.4e-14	51.2	0.3	2.2	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|124028423|ref|YP_001013743.1|	-	4.8e-15	55.1	1.5	1.6e-14	53.4	0.1	2.0	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.1	gi|124028423|ref|YP_001013743.1|	-	6.2e-12	44.9	1.0	1.7e-05	24.3	0.1	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.24	gi|124028423|ref|YP_001013743.1|	-	1.6e-07	30.8	2.4	0.00062	19.3	0.1	2.4	2	0	0	2	2	2	2	KH	domain
Moricin	PF06451.6	gi|124028423|ref|YP_001013743.1|	-	0.03	13.7	6.7	0.036	13.5	0.9	2.3	2	0	0	2	2	2	0	Moricin
Ribosomal_S7e	PF01251.13	gi|124028423|ref|YP_001013743.1|	-	0.11	11.9	0.1	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S7e
KH_3	PF13014.1	gi|124028423|ref|YP_001013743.1|	-	0.65	9.7	9.3	0.25	11.0	0.3	3.2	3	0	0	3	3	3	0	KH	domain
Ribosom_S12_S23	PF00164.20	gi|124028424|ref|YP_001013744.1|	-	9.2e-39	131.6	0.2	1.1e-38	131.3	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
DNase-RNase	PF02577.9	gi|124028425|ref|YP_001013745.1|	-	6.4e-08	31.9	0.1	1e-07	31.2	0.1	1.3	1	1	0	1	1	1	1	Bifunctional	nuclease
Ribosomal_S7	PF00177.16	gi|124028426|ref|YP_001013746.1|	-	1.9e-47	160.5	0.1	2.3e-47	160.3	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
GTP_EFTU	PF00009.22	gi|124028427|ref|YP_001013747.1|	-	3e-57	193.1	0.0	4.4e-57	192.5	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|124028427|ref|YP_001013747.1|	-	1.6e-28	98.7	0.1	5e-28	97.1	0.1	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|124028427|ref|YP_001013747.1|	-	4.3e-21	74.8	2.2	6.6e-21	74.2	0.9	1.8	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|124028427|ref|YP_001013747.1|	-	1.1e-07	31.4	0.8	2.9e-07	30.0	0.6	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|124028427|ref|YP_001013747.1|	-	2.6e-06	27.3	0.0	6.1e-06	26.1	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|124028427|ref|YP_001013747.1|	-	4.4e-05	23.9	0.1	0.00067	20.1	0.1	2.4	1	1	0	1	1	1	1	Miro-like	protein
Dynamin_N	PF00350.18	gi|124028427|ref|YP_001013747.1|	-	0.006	16.4	0.2	1.1	9.0	0.0	2.7	2	1	0	3	3	3	1	Dynamin	family
Septin	PF00735.13	gi|124028427|ref|YP_001013747.1|	-	0.0087	15.0	0.0	0.033	13.2	0.0	1.8	2	1	0	2	2	2	1	Septin
FeoB_N	PF02421.13	gi|124028427|ref|YP_001013747.1|	-	0.073	12.3	0.1	0.83	8.9	0.0	2.5	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
SRPRB	PF09439.5	gi|124028427|ref|YP_001013747.1|	-	0.081	12.1	0.1	0.5	9.5	0.0	2.0	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Ribosomal_S10	PF00338.17	gi|124028428|ref|YP_001013748.1|	-	1.7e-30	104.7	0.1	1.8e-30	104.6	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
DUF43	PF01861.11	gi|124028428|ref|YP_001013748.1|	-	0.078	11.9	1.1	0.14	11.1	0.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF43
ParBc	PF02195.13	gi|124028429|ref|YP_001013749.1|	-	3.7e-15	55.8	0.1	6e-15	55.1	0.1	1.3	1	0	0	1	1	1	1	ParB-like	nuclease	domain
DUF1015	PF06245.6	gi|124028429|ref|YP_001013749.1|	-	0.0095	14.4	3.4	0.16	10.4	0.1	2.3	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF1015)
PALP	PF00291.20	gi|124028430|ref|YP_001013750.1|	-	3.9e-45	154.4	0.0	5.1e-45	154.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
BcrAD_BadFG	PF01869.15	gi|124028432|ref|YP_001013752.1|	-	7.9e-30	104.0	4.5	9.3e-30	103.8	3.1	1.0	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Rubrerythrin	PF02915.12	gi|124028433|ref|YP_001013753.1|	-	0.01	16.1	5.8	0.015	15.6	3.1	2.0	1	1	1	2	2	2	1	Rubrerythrin
Coat_F	PF07875.7	gi|124028433|ref|YP_001013753.1|	-	0.02	15.0	0.1	0.048	13.7	0.0	1.7	1	1	0	1	1	1	0	Coat	F	domain
Aminotran_5	PF00266.14	gi|124028434|ref|YP_001013754.1|	-	3.8e-37	127.8	0.0	5e-37	127.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|124028434|ref|YP_001013754.1|	-	7.9e-12	44.9	0.0	4.4e-11	42.4	0.0	2.1	1	1	0	1	1	1	1	Beta-eliminating	lyase
DegT_DnrJ_EryC1	PF01041.12	gi|124028434|ref|YP_001013754.1|	-	0.0034	16.4	0.4	0.006	15.6	0.3	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.15	gi|124028434|ref|YP_001013754.1|	-	0.038	12.2	0.0	0.059	11.6	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Amastin	PF07344.6	gi|124028435|ref|YP_001013755.1|	-	0.15	11.6	1.8	0.17	11.5	1.2	1.2	1	0	0	1	1	1	0	Amastin	surface	glycoprotein
EMG1	PF03587.9	gi|124028436|ref|YP_001013756.1|	-	5.8e-49	166.1	0.0	6.5e-49	165.9	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
Rpr2	PF04032.11	gi|124028437|ref|YP_001013757.1|	-	4.9e-15	55.1	0.0	6.2e-15	54.8	0.0	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
DUF1771	PF08590.5	gi|124028437|ref|YP_001013757.1|	-	0.004	17.1	1.0	0.0061	16.5	0.7	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1771)
TPR_4	PF07721.9	gi|124028437|ref|YP_001013757.1|	-	0.022	15.1	1.5	0.076	13.4	1.0	2.0	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Nudix_N_2	PF14803.1	gi|124028437|ref|YP_001013757.1|	-	2.6	7.8	6.6	2.8	7.7	0.1	2.7	3	0	0	3	3	3	0	Nudix	N-terminal
CRS1_YhbY	PF01985.16	gi|124028438|ref|YP_001013758.1|	-	4.4e-16	58.6	1.9	6.4e-16	58.1	1.3	1.2	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Ribosomal_S19e	PF01090.14	gi|124028439|ref|YP_001013759.1|	-	3.8e-60	201.3	0.0	4.3e-60	201.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
HTH_12	PF08461.5	gi|124028439|ref|YP_001013759.1|	-	0.00039	20.0	1.4	0.018	14.7	0.1	2.7	4	0	0	4	4	4	1	Ribonuclease	R	winged-helix	domain
Rrf2	PF02082.15	gi|124028439|ref|YP_001013759.1|	-	0.0018	18.3	0.2	0.0048	16.9	0.1	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.14	gi|124028439|ref|YP_001013759.1|	-	0.0029	17.2	0.3	0.12	12.0	0.0	2.9	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|124028439|ref|YP_001013759.1|	-	0.0087	15.4	2.4	0.041	13.3	0.4	2.4	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
DUF2250	PF10007.4	gi|124028439|ref|YP_001013759.1|	-	0.073	12.9	0.1	1.1	9.1	0.0	2.5	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
MarR_2	PF12802.2	gi|124028439|ref|YP_001013759.1|	-	0.11	12.2	0.7	0.27	10.9	0.2	1.9	2	0	0	2	2	2	0	MarR	family
dsDNA_bind	PF01984.15	gi|124028440|ref|YP_001013760.1|	-	4.7e-29	100.5	13.3	5.5e-29	100.2	9.2	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
Radial_spoke_3	PF06098.6	gi|124028440|ref|YP_001013760.1|	-	1.9e-05	23.8	8.5	2.1e-05	23.6	5.9	1.0	1	0	0	1	1	1	1	Radial	spoke	protein	3
PV-1	PF06637.6	gi|124028440|ref|YP_001013760.1|	-	0.035	12.6	5.6	0.039	12.5	3.9	1.1	1	0	0	1	1	1	0	PV-1	protein	(PLVAP)
Ribosomal_L39	PF00832.15	gi|124028441|ref|YP_001013761.1|	-	2.5e-23	81.2	12.4	2.8e-23	81.0	8.6	1.0	1	0	0	1	1	1	1	Ribosomal	L39	protein
DUF3914	PF13053.1	gi|124028441|ref|YP_001013761.1|	-	0.07	13.2	0.1	0.081	13.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3914)
Ribosomal_L31e	PF01198.14	gi|124028442|ref|YP_001013762.1|	-	2.7e-24	84.6	2.7	3.3e-24	84.3	1.9	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L31e
EB_dh	PF09459.5	gi|124028442|ref|YP_001013762.1|	-	0.11	11.9	0.0	0.11	11.9	0.0	1.1	1	0	0	1	1	1	0	Ethylbenzene	dehydrogenase
eIF-6	PF01912.13	gi|124028443|ref|YP_001013763.1|	-	3.7e-70	235.0	3.6	4.6e-70	234.7	2.5	1.1	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L18ae	PF01775.12	gi|124028444|ref|YP_001013764.1|	-	4.4e-11	42.7	0.1	6.2e-11	42.2	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	L18ae/LX	protein	domain
Flu_PA	PF00603.12	gi|124028444|ref|YP_001013764.1|	-	0.063	11.3	0.1	0.07	11.1	0.0	1.0	1	0	0	1	1	1	0	Influenza	RNA-dependent	RNA	polymerase	subunit	PA
Prefoldin	PF02996.12	gi|124028445|ref|YP_001013765.1|	-	8.8e-18	64.1	0.8	1.2e-17	63.6	0.5	1.2	1	0	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.15	gi|124028445|ref|YP_001013765.1|	-	5.8e-08	32.4	1.5	0.00074	19.2	0.0	2.3	2	0	0	2	2	2	2	Prefoldin	subunit
Baculo_PEP_C	PF04513.7	gi|124028445|ref|YP_001013765.1|	-	0.00095	19.0	1.1	0.004	16.9	0.5	1.9	2	0	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
BLOC1_2	PF10046.4	gi|124028445|ref|YP_001013765.1|	-	0.061	13.4	2.7	0.6	10.2	0.5	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PilJ	PF13675.1	gi|124028445|ref|YP_001013765.1|	-	0.066	13.5	5.7	0.52	10.6	0.5	2.2	2	0	0	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Nsp1_C	PF05064.8	gi|124028445|ref|YP_001013765.1|	-	0.073	12.7	3.2	2.1	8.0	0.0	2.3	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
DASH_Dam1	PF08653.5	gi|124028445|ref|YP_001013765.1|	-	0.099	12.4	0.6	0.24	11.2	0.1	1.9	2	1	0	2	2	1	0	DASH	complex	subunit	Dam1
DASH_Dad3	PF08656.5	gi|124028445|ref|YP_001013765.1|	-	0.14	11.8	2.7	0.46	10.2	0.3	2.4	2	1	0	2	2	2	0	DASH	complex	subunit	Dad3
CENP-F_leu_zip	PF10473.4	gi|124028445|ref|YP_001013765.1|	-	0.2	11.5	4.7	1.2	8.9	0.7	2.1	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF972	PF06156.8	gi|124028445|ref|YP_001013765.1|	-	0.29	11.5	2.1	3.6	7.9	0.2	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Reo_sigmaC	PF04582.7	gi|124028445|ref|YP_001013765.1|	-	0.32	10.1	1.5	3.5	6.7	0.5	1.9	1	1	1	2	2	2	0	Reovirus	sigma	C	capsid	protein
DivIC	PF04977.10	gi|124028445|ref|YP_001013765.1|	-	0.32	10.5	8.8	0.18	11.3	1.3	2.3	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4164	PF13747.1	gi|124028445|ref|YP_001013765.1|	-	0.48	10.5	7.8	1.6	8.8	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF4140	PF13600.1	gi|124028445|ref|YP_001013765.1|	-	0.88	10.0	6.5	5.2	7.5	1.6	2.5	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
IncA	PF04156.9	gi|124028445|ref|YP_001013765.1|	-	1.2	8.7	11.4	2.8	7.4	2.2	2.1	2	0	0	2	2	2	0	IncA	protein
HAUS-augmin3	PF14932.1	gi|124028445|ref|YP_001013765.1|	-	1.5	7.9	9.3	1.4	8.0	0.5	2.0	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	3
FlxA	PF14282.1	gi|124028445|ref|YP_001013765.1|	-	1.6	8.7	8.9	0.12	12.3	1.9	2.0	2	0	0	2	2	2	0	FlxA-like	protein
MerR-DNA-bind	PF09278.6	gi|124028445|ref|YP_001013765.1|	-	4.4	7.7	9.6	1.2	9.5	0.5	2.7	2	1	1	3	3	3	0	MerR,	DNA	binding
TPR_MLP1_2	PF07926.7	gi|124028445|ref|YP_001013765.1|	-	7.7	6.2	11.3	7.1	6.3	1.2	2.5	2	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
SRP54	PF00448.17	gi|124028446|ref|YP_001013766.1|	-	4.7e-72	241.5	0.0	6e-72	241.2	0.0	1.1	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|124028446|ref|YP_001013766.1|	-	7e-08	32.4	3.7	7e-08	32.4	2.6	2.0	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
AAA_22	PF13401.1	gi|124028446|ref|YP_001013766.1|	-	9.6e-06	25.7	0.0	3.9e-05	23.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|124028446|ref|YP_001013766.1|	-	0.00034	20.3	0.1	0.0034	17.1	0.0	2.3	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|124028446|ref|YP_001013766.1|	-	0.00096	19.0	0.0	0.002	18.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|124028446|ref|YP_001013766.1|	-	0.0011	18.5	0.7	0.015	14.9	0.2	2.5	1	1	1	2	2	2	1	AAA	domain
ArgK	PF03308.11	gi|124028446|ref|YP_001013766.1|	-	0.0032	16.3	0.4	0.012	14.4	0.0	2.2	2	1	0	2	2	2	1	ArgK	protein
cobW	PF02492.14	gi|124028446|ref|YP_001013766.1|	-	0.0043	16.5	0.0	0.0074	15.7	0.0	1.3	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.7	gi|124028446|ref|YP_001013766.1|	-	0.0059	15.7	0.0	0.013	14.5	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
P53_C	PF11619.3	gi|124028446|ref|YP_001013766.1|	-	0.015	15.0	0.0	0.034	13.8	0.0	1.6	1	0	0	1	1	1	0	Transcription	factor	P53	-	C	terminal	domain
CbiA	PF01656.18	gi|124028446|ref|YP_001013766.1|	-	0.016	14.6	0.8	0.21	10.9	0.5	2.3	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Thymidylate_kin	PF02223.12	gi|124028446|ref|YP_001013766.1|	-	0.016	14.6	0.1	0.074	12.4	0.0	2.2	2	1	0	2	2	2	0	Thymidylate	kinase
AAA_28	PF13521.1	gi|124028446|ref|YP_001013766.1|	-	0.023	14.6	0.3	0.092	12.7	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
KaiC	PF06745.8	gi|124028446|ref|YP_001013766.1|	-	0.024	13.7	0.0	0.05	12.7	0.0	1.5	1	0	0	1	1	1	0	KaiC
AAA	PF00004.24	gi|124028446|ref|YP_001013766.1|	-	0.043	14.0	0.1	0.14	12.3	0.0	1.9	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|124028446|ref|YP_001013766.1|	-	0.046	13.6	0.2	0.21	11.5	0.0	2.2	1	1	1	2	2	2	0	AAA	ATPase	domain
Miro	PF08477.8	gi|124028446|ref|YP_001013766.1|	-	0.048	14.1	0.0	0.094	13.2	0.0	1.6	1	1	0	1	1	1	0	Miro-like	protein
NB-ARC	PF00931.17	gi|124028446|ref|YP_001013766.1|	-	0.086	11.6	0.0	9.9	4.9	0.0	2.1	2	0	0	2	2	2	0	NB-ARC	domain
MMR_HSR1	PF01926.18	gi|124028446|ref|YP_001013766.1|	-	0.089	12.7	0.0	0.21	11.5	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_24	PF13479.1	gi|124028446|ref|YP_001013766.1|	-	0.089	12.3	0.2	0.42	10.1	0.1	2.3	2	1	0	2	2	2	0	AAA	domain
G-alpha	PF00503.15	gi|124028446|ref|YP_001013766.1|	-	0.099	11.3	0.0	0.17	10.5	0.0	1.4	1	0	0	1	1	1	0	G-protein	alpha	subunit
TrwB_AAD_bind	PF10412.4	gi|124028446|ref|YP_001013766.1|	-	0.11	11.1	0.0	5.3	5.5	0.0	2.2	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_19	PF13245.1	gi|124028446|ref|YP_001013766.1|	-	0.12	12.1	0.4	0.6	9.9	0.3	2.4	1	1	0	1	1	1	0	Part	of	AAA	domain
AAA_17	PF13207.1	gi|124028446|ref|YP_001013766.1|	-	0.83	10.4	3.2	2.3	9.0	0.7	2.6	2	1	0	2	2	2	0	AAA	domain
SecE	PF00584.15	gi|124028447|ref|YP_001013767.1|	-	0.0001	21.8	0.1	0.00013	21.5	0.1	1.1	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
PLDc_N	PF13396.1	gi|124028447|ref|YP_001013767.1|	-	0.03	14.0	0.5	0.047	13.3	0.3	1.4	1	0	0	1	1	1	0	Phospholipase_D-nuclease	N-terminal
FixQ	PF05545.6	gi|124028447|ref|YP_001013767.1|	-	0.11	12.1	0.1	0.16	11.6	0.1	1.3	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Spt5-NGN	PF03439.8	gi|124028448|ref|YP_001013768.1|	-	6.6e-20	70.6	0.1	1.9e-19	69.1	0.0	1.7	2	0	0	2	2	2	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|124028448|ref|YP_001013768.1|	-	2.5e-09	36.4	0.2	6.7e-09	35.1	0.1	1.7	1	0	0	1	1	1	1	KOW	motif
NusG	PF02357.14	gi|124028448|ref|YP_001013768.1|	-	0.035	14.3	0.1	0.16	12.2	0.0	2.1	2	1	0	2	2	2	0	Transcription	termination	factor	nusG
YajC	PF02699.10	gi|124028448|ref|YP_001013768.1|	-	0.089	12.4	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	Preprotein	translocase	subunit
Ribosomal_L11	PF00298.14	gi|124028449|ref|YP_001013769.1|	-	3.5e-22	78.3	0.6	3.5e-22	78.3	0.4	1.7	2	0	0	2	2	2	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.9	gi|124028449|ref|YP_001013769.1|	-	1.4e-19	69.2	0.8	2.6e-19	68.3	0.3	1.7	2	0	0	2	2	2	1	Ribosomal	protein	L11,	N-terminal	domain
Clp_N	PF02861.15	gi|124028449|ref|YP_001013769.1|	-	0.078	12.9	2.9	3	7.8	0.0	3.4	4	0	0	4	4	4	0	Clp	amino	terminal	domain
ATP-cone	PF03477.11	gi|124028449|ref|YP_001013769.1|	-	0.079	13.4	0.4	5.1	7.5	0.0	2.2	2	0	0	2	2	2	0	ATP	cone	domain
ScdA_N	PF04405.9	gi|124028449|ref|YP_001013769.1|	-	0.099	12.0	0.0	0.32	10.4	0.0	1.9	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
Ribosomal_L1	PF00687.16	gi|124028450|ref|YP_001013770.1|	-	6.1e-41	140.1	0.0	6.8e-41	140.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
tRNA-synt_2c	PF01411.14	gi|124028451|ref|YP_001013771.1|	-	1.2e-110	370.4	0.0	1.6e-110	369.9	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|124028451|ref|YP_001013771.1|	-	5.3e-15	55.0	0.1	1.5e-14	53.6	0.1	1.8	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2e	PF02091.10	gi|124028451|ref|YP_001013771.1|	-	0.023	13.7	0.2	0.044	12.8	0.1	1.3	1	0	0	1	1	1	0	Glycyl-tRNA	synthetase	alpha	subunit
V-ATPase_G	PF03179.10	gi|124028451|ref|YP_001013771.1|	-	0.076	13.3	0.1	0.28	11.4	0.0	2.0	1	0	0	1	1	1	0	Vacuolar	(H+)-ATPase	G	subunit
Methyltransf_23	PF13489.1	gi|124028452|ref|YP_001013772.1|	-	0.085	12.5	0.0	0.19	11.4	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Fer4_17	PF13534.1	gi|124028453|ref|YP_001013773.1|	-	1.6e-07	31.5	2.1	3.3e-07	30.5	1.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124028453|ref|YP_001013773.1|	-	2.2e-07	30.7	1.5	4e-07	29.9	1.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|124028453|ref|YP_001013773.1|	-	1.8e-05	24.9	1.9	3.5e-05	24.1	1.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|124028453|ref|YP_001013773.1|	-	0.032	14.0	2.6	0.57	10.0	0.5	2.3	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124028453|ref|YP_001013773.1|	-	0.047	13.6	3.8	0.12	12.3	0.4	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124028453|ref|YP_001013773.1|	-	0.079	12.7	6.8	0.18	11.6	1.6	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028453|ref|YP_001013773.1|	-	0.15	12.3	6.3	0.65	10.3	4.4	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|124028453|ref|YP_001013773.1|	-	0.21	11.2	4.3	0.23	11.1	1.2	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|124028453|ref|YP_001013773.1|	-	0.35	11.3	6.7	2.5	8.5	4.6	2.2	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124028453|ref|YP_001013773.1|	-	1.5	9.3	8.9	0.19	12.1	1.6	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
CCG	PF02754.11	gi|124028454|ref|YP_001013774.1|	-	1e-06	28.6	0.7	2.5e-06	27.4	0.2	1.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Tautomerase	PF01361.16	gi|124028454|ref|YP_001013774.1|	-	0.026	14.1	0.0	0.043	13.4	0.0	1.3	1	0	0	1	1	1	0	Tautomerase	enzyme
DUF678	PF05077.7	gi|124028454|ref|YP_001013774.1|	-	0.12	12.4	0.5	0.39	10.7	0.1	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF678)
Nitroreductase	PF00881.19	gi|124028455|ref|YP_001013775.1|	-	1.5e-10	41.1	0.1	1.8e-10	40.8	0.1	1.1	1	0	0	1	1	1	1	Nitroreductase	family
DUF296	PF03479.10	gi|124028456|ref|YP_001013776.1|	-	6.7e-18	64.4	0.1	7.5e-18	64.2	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF296)
Peptidase_C15	PF01470.12	gi|124028457|ref|YP_001013777.1|	-	6.9e-34	117.4	0.0	7.8e-34	117.2	0.0	1.0	1	0	0	1	1	1	1	Pyroglutamyl	peptidase
Cons_hypoth698	PF03601.9	gi|124028458|ref|YP_001013778.1|	-	0.16	10.6	0.0	0.21	10.2	0.0	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	protein	698
LAGLIDADG_3	PF14528.1	gi|124028459|ref|YP_001013779.1|	-	7.7e-07	29.2	0.0	1.4e-06	28.3	0.0	1.5	1	0	0	1	1	1	1	LAGLIDADG-like	domain
Hom_end	PF05204.9	gi|124028459|ref|YP_001013779.1|	-	0.0042	17.0	0.0	0.008	16.1	0.0	1.5	1	0	0	1	1	1	1	Homing	endonuclease
DUF3232	PF11554.3	gi|124028459|ref|YP_001013779.1|	-	0.012	15.5	0.7	0.63	9.9	0.1	2.9	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3232)
DUF4600	PF15372.1	gi|124028459|ref|YP_001013779.1|	-	0.098	12.8	0.2	0.15	12.2	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4600)
DUF104	PF01954.11	gi|124028460|ref|YP_001013780.1|	-	2.4e-18	65.9	0.8	2.7e-18	65.7	0.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF104
Mac	PF12464.3	gi|124028461|ref|YP_001013781.1|	-	0.17	11.8	1.6	0.51	10.4	1.1	1.7	1	1	0	1	1	1	0	Maltose	acetyltransferase
Hydantoinase_A	PF01968.13	gi|124028463|ref|YP_001013783.1|	-	1.1e-89	300.4	5.2	1.9e-88	296.3	0.9	2.4	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|124028463|ref|YP_001013783.1|	-	2.8e-45	153.9	0.0	9.1e-45	152.3	0.0	1.9	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
BcrAD_BadFG	PF01869.15	gi|124028463|ref|YP_001013783.1|	-	0.0033	16.7	0.0	0.052	12.8	0.0	2.3	2	1	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
AP_endonuc_2	PF01261.19	gi|124028463|ref|YP_001013783.1|	-	0.093	12.0	0.0	0.52	9.5	0.0	2.2	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
MutL	PF13941.1	gi|124028463|ref|YP_001013783.1|	-	0.12	10.7	0.5	7.1	4.8	0.0	2.2	2	0	0	2	2	2	0	MutL	protein
EutA	PF06277.6	gi|124028463|ref|YP_001013783.1|	-	0.15	10.5	1.9	0.69	8.4	0.1	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	protein	EutA
Hydantoinase_B	PF02538.9	gi|124028464|ref|YP_001013784.1|	-	9.4e-172	571.8	0.0	1.1e-171	571.6	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
TPP_enzyme_C	PF02775.16	gi|124028465|ref|YP_001013785.1|	-	1.3e-26	92.9	0.1	4.9e-26	91.1	0.1	2.0	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.14	gi|124028465|ref|YP_001013785.1|	-	4.1e-16	59.1	0.1	1.1e-15	57.7	0.0	1.8	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.22	gi|124028465|ref|YP_001013785.1|	-	1.1e-12	47.0	12.1	3.9e-08	32.5	2.0	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|124028465|ref|YP_001013785.1|	-	1.4e-07	31.1	10.7	2.7e-07	30.3	7.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|124028465|ref|YP_001013785.1|	-	1.5e-07	30.9	13.6	0.0007	19.3	2.2	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|124028465|ref|YP_001013785.1|	-	2.2e-07	31.1	13.1	7.9e-07	29.3	8.9	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|124028465|ref|YP_001013785.1|	-	6.2e-07	29.0	19.2	3.2e-05	23.5	1.5	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|124028465|ref|YP_001013785.1|	-	1.2e-06	28.2	6.4	2.4e-06	27.3	4.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|124028465|ref|YP_001013785.1|	-	8.2e-05	22.5	9.6	0.00019	21.3	6.6	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|124028465|ref|YP_001013785.1|	-	0.00018	21.7	23.3	0.0022	18.1	1.8	2.1	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|124028465|ref|YP_001013785.1|	-	0.00036	20.6	13.2	0.0035	17.5	2.2	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
TPP_enzyme_N	PF02776.13	gi|124028465|ref|YP_001013785.1|	-	0.00036	20.0	3.5	0.05	13.1	1.0	2.8	2	1	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_17	PF13534.1	gi|124028465|ref|YP_001013785.1|	-	0.00052	20.3	4.6	0.023	15.0	0.3	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|124028465|ref|YP_001013785.1|	-	0.0053	17.3	13.0	0.17	12.5	2.2	2.9	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|124028465|ref|YP_001013785.1|	-	0.012	15.9	10.9	0.52	10.7	0.9	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|124028465|ref|YP_001013785.1|	-	0.021	15.5	1.5	0.021	15.5	1.0	2.6	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_11	PF13247.1	gi|124028465|ref|YP_001013785.1|	-	0.073	12.9	4.1	0.15	11.9	2.9	1.4	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Transket_pyr	PF02779.19	gi|124028465|ref|YP_001013785.1|	-	0.081	12.4	0.3	0.36	10.2	0.1	2.2	2	1	0	2	2	2	0	Transketolase,	pyrimidine	binding	domain
DXP_synthase_N	PF13292.1	gi|124028465|ref|YP_001013785.1|	-	0.13	11.1	0.1	0.24	10.3	0.1	1.3	1	0	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
GATA	PF00320.22	gi|124028465|ref|YP_001013785.1|	-	6.1	6.2	6.3	39	3.7	1.0	2.3	1	1	1	2	2	2	0	GATA	zinc	finger
Fer4_18	PF13746.1	gi|124028465|ref|YP_001013785.1|	-	9.1	6.7	14.2	7.1e+02	0.7	9.8	2.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
POR	PF01558.13	gi|124028466|ref|YP_001013786.1|	-	2.1e-36	125.4	0.0	2.7e-36	125.0	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
adh_short_C2	PF13561.1	gi|124028467|ref|YP_001013787.1|	-	1.5e-30	106.7	0.0	1.8e-30	106.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|124028467|ref|YP_001013787.1|	-	3.7e-17	62.7	0.2	4.9e-17	62.3	0.1	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|124028467|ref|YP_001013787.1|	-	1.4e-10	41.1	0.3	2.8e-10	40.1	0.2	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|124028467|ref|YP_001013787.1|	-	0.0026	17.2	0.0	0.0038	16.6	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Saccharop_dh	PF03435.13	gi|124028467|ref|YP_001013787.1|	-	0.0031	16.5	0.0	0.0047	15.9	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
NAD_binding_10	PF13460.1	gi|124028467|ref|YP_001013787.1|	-	0.017	15.1	0.2	0.045	13.7	0.1	1.7	1	1	0	1	1	1	0	NADH(P)-binding
ADH_zinc_N	PF00107.21	gi|124028467|ref|YP_001013787.1|	-	0.033	13.7	0.2	0.064	12.7	0.1	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
3HCDH_N	PF02737.13	gi|124028467|ref|YP_001013787.1|	-	0.042	13.5	0.2	0.099	12.2	0.0	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|124028467|ref|YP_001013787.1|	-	0.069	13.2	0.0	0.3	11.2	0.0	2.0	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NmrA	PF05368.8	gi|124028467|ref|YP_001013787.1|	-	0.082	12.1	0.5	0.12	11.5	0.4	1.2	1	0	0	1	1	1	0	NmrA-like	family
HEM4	PF02602.10	gi|124028467|ref|YP_001013787.1|	-	0.088	12.0	0.2	0.25	10.5	0.1	1.7	1	1	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
DUF402	PF04167.8	gi|124028468|ref|YP_001013788.1|	-	3.3e-21	74.8	0.2	7.2e-21	73.8	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
RNase_E_G	PF10150.4	gi|124028468|ref|YP_001013788.1|	-	9.7e-09	34.8	0.3	1.4e-08	34.3	0.2	1.2	1	0	0	1	1	1	1	Ribonuclease	E/G	family
BON	PF04972.12	gi|124028468|ref|YP_001013788.1|	-	0.073	12.8	0.2	13	5.6	0.0	2.7	2	0	0	2	2	2	0	BON	domain
RHH_1	PF01402.16	gi|124028469|ref|YP_001013789.1|	-	1e-10	40.9	3.2	1.6e-10	40.3	2.2	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|124028469|ref|YP_001013789.1|	-	5.2e-07	29.2	1.7	7.4e-07	28.7	1.2	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
DUF2191	PF09957.4	gi|124028469|ref|YP_001013789.1|	-	0.098	12.4	1.2	0.36	10.6	0.9	1.9	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
RHH_2	PF03693.9	gi|124028469|ref|YP_001013789.1|	-	0.12	12.5	0.1	0.16	12.1	0.1	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0156)
UPF0147	PF03685.8	gi|124028470|ref|YP_001013790.1|	-	1.7e-39	133.5	2.2	1.9e-39	133.3	1.5	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
UPF0253	PF06786.7	gi|124028470|ref|YP_001013790.1|	-	0.035	14.2	0.6	1.5	8.9	0.1	2.2	1	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0253)
HEAT_2	PF13646.1	gi|124028470|ref|YP_001013790.1|	-	0.065	13.5	0.4	0.17	12.1	0.3	1.8	1	1	0	1	1	1	0	HEAT	repeats
HEAT_PBS	PF03130.11	gi|124028470|ref|YP_001013790.1|	-	0.069	13.6	0.6	0.22	12.0	0.2	2.1	2	1	0	2	2	2	0	PBS	lyase	HEAT-like	repeat
Auto_anti-p27	PF06677.7	gi|124028471|ref|YP_001013791.1|	-	8.9e-20	70.1	0.8	1.3e-19	69.6	0.5	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
TF_Zn_Ribbon	PF08271.7	gi|124028471|ref|YP_001013791.1|	-	0.014	14.7	0.6	0.39	10.0	0.7	2.2	1	1	1	2	2	2	0	TFIIB	zinc-binding
Arc_PepC	PF06819.6	gi|124028471|ref|YP_001013791.1|	-	0.037	13.9	0.8	0.077	12.9	0.5	1.6	1	1	0	1	1	1	0	Archaeal	Peptidase	A24	C-terminal	Domain
Trm112p	PF03966.11	gi|124028471|ref|YP_001013791.1|	-	0.094	13.0	0.8	0.33	11.3	0.6	1.9	1	1	0	1	1	1	0	Trm112p-like	protein
DUF4099	PF13351.1	gi|124028471|ref|YP_001013791.1|	-	0.1	12.5	0.1	15	5.5	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4099)
DUF126	PF01989.11	gi|124028472|ref|YP_001013792.1|	-	4.8e-25	87.0	0.2	7.8e-25	86.3	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF126
DUF521	PF04412.8	gi|124028473|ref|YP_001013793.1|	-	6.3e-91	304.8	0.0	7.8e-91	304.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UbiD	PF01977.11	gi|124028474|ref|YP_001013794.1|	-	1.3e-95	320.2	0.0	1.5e-95	320.0	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
MobB	PF03205.9	gi|124028475|ref|YP_001013795.1|	-	4.9e-08	32.7	0.0	4.4e-07	29.6	0.0	2.4	2	1	1	3	3	3	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Clp1	PF06807.9	gi|124028475|ref|YP_001013795.1|	-	6.4e-06	26.0	0.1	2.2e-05	24.3	0.1	1.8	1	1	0	1	1	1	1	Pre-mRNA	cleavage	complex	II	protein	Clp1
AAA_10	PF12846.2	gi|124028475|ref|YP_001013795.1|	-	8.4e-05	22.1	0.0	0.00067	19.1	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
DUF2190	PF09956.4	gi|124028475|ref|YP_001013795.1|	-	0.00063	19.4	0.0	0.0013	18.4	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2190)
PduV-EutP	PF10662.4	gi|124028475|ref|YP_001013795.1|	-	0.14	11.6	0.0	0.38	10.2	0.0	1.7	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Dak1_2	PF13684.1	gi|124028475|ref|YP_001013795.1|	-	0.18	10.7	0.4	6.9	5.5	0.2	2.1	2	0	0	2	2	2	0	Dihydroxyacetone	kinase	family
AAA_25	PF13481.1	gi|124028477|ref|YP_001013797.1|	-	6.2e-08	32.2	0.0	1.3e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
KaiC	PF06745.8	gi|124028477|ref|YP_001013797.1|	-	1.7e-07	30.5	0.0	9.6e-06	24.8	0.0	2.1	1	1	0	1	1	1	1	KaiC
AAA_16	PF13191.1	gi|124028477|ref|YP_001013797.1|	-	3.6e-06	27.0	0.3	6.3e-06	26.3	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_24	PF13479.1	gi|124028477|ref|YP_001013797.1|	-	5.2e-06	26.1	0.0	7.5e-06	25.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|124028477|ref|YP_001013797.1|	-	2.4e-05	23.5	0.0	3.3e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_19	PF13245.1	gi|124028477|ref|YP_001013797.1|	-	0.00021	20.9	0.0	0.00044	19.9	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|124028477|ref|YP_001013797.1|	-	0.00033	20.1	0.2	0.00051	19.4	0.1	1.5	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
PhoH	PF02562.11	gi|124028477|ref|YP_001013797.1|	-	0.00033	19.9	0.0	0.00053	19.2	0.0	1.4	1	0	0	1	1	1	1	PhoH-like	protein
AAA	PF00004.24	gi|124028477|ref|YP_001013797.1|	-	0.00078	19.6	0.0	0.0016	18.6	0.0	1.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|124028477|ref|YP_001013797.1|	-	0.0028	17.8	0.3	0.0079	16.3	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|124028477|ref|YP_001013797.1|	-	0.0047	16.8	0.0	0.015	15.2	0.0	1.8	1	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|124028477|ref|YP_001013797.1|	-	0.0059	17.4	0.0	0.0095	16.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Parvo_NS1	PF01057.12	gi|124028477|ref|YP_001013797.1|	-	0.0059	15.5	0.0	0.008	15.0	0.0	1.1	1	0	0	1	1	1	1	Parvovirus	non-structural	protein	NS1
DUF2075	PF09848.4	gi|124028477|ref|YP_001013797.1|	-	0.01	14.8	0.0	0.011	14.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Zot	PF05707.7	gi|124028477|ref|YP_001013797.1|	-	0.011	15.1	0.0	0.015	14.8	0.0	1.2	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
Sigma54_activat	PF00158.21	gi|124028477|ref|YP_001013797.1|	-	0.025	14.0	0.0	0.07	12.6	0.0	1.7	1	1	0	1	1	1	0	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|124028477|ref|YP_001013797.1|	-	0.037	13.7	0.0	0.049	13.3	0.0	1.3	1	1	0	1	1	1	0	Archaeal	ATPase
NACHT	PF05729.7	gi|124028477|ref|YP_001013797.1|	-	0.038	13.6	0.4	0.058	13.0	0.3	1.5	1	1	0	1	1	1	0	NACHT	domain
CobU	PF02283.11	gi|124028477|ref|YP_001013797.1|	-	0.049	13.0	0.0	0.062	12.6	0.0	1.3	1	0	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Mg_chelatase	PF01078.16	gi|124028477|ref|YP_001013797.1|	-	0.073	12.2	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NB-ARC	PF00931.17	gi|124028477|ref|YP_001013797.1|	-	0.14	10.9	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
GvpD	PF07088.6	gi|124028477|ref|YP_001013797.1|	-	0.15	10.3	0.0	0.18	10.0	0.0	1.2	1	0	0	1	1	1	0	GvpD	gas	vesicle	protein
T2SE	PF00437.15	gi|124028477|ref|YP_001013797.1|	-	0.16	10.8	0.0	0.21	10.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF46	PF01864.12	gi|124028478|ref|YP_001013798.1|	-	5.6e-36	124.0	0.9	2.7e-35	121.7	0.6	1.8	1	1	0	1	1	1	1	Putative	integral	membrane	protein	DUF46
CTP_transf_1	PF01148.15	gi|124028478|ref|YP_001013798.1|	-	5.7e-10	39.2	2.1	1.9e-09	37.5	0.3	1.9	2	0	0	2	2	2	1	Cytidylyltransferase	family
SNARE_assoc	PF09335.6	gi|124028478|ref|YP_001013798.1|	-	0.2	11.8	3.6	0.52	10.5	2.5	1.8	1	1	0	1	1	1	0	SNARE	associated	Golgi	protein
Nop10p	PF04135.7	gi|297616209|ref|YP_003710349.1|	-	2e-25	88.2	0.8	2.2e-25	88.1	0.5	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
zf-CCHC_4	PF14392.1	gi|297616209|ref|YP_003710349.1|	-	0.025	14.2	0.1	0.034	13.8	0.0	1.2	1	0	0	1	1	1	0	Zinc	knuckle
Desulfoferrod_N	PF06397.7	gi|297616209|ref|YP_003710349.1|	-	0.028	13.8	2.9	1.2	8.6	0.0	2.2	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
DUF35_N	PF12172.3	gi|297616209|ref|YP_003710349.1|	-	0.032	14.1	4.9	0.032	14.1	3.4	1.7	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
RecR	PF02132.10	gi|297616209|ref|YP_003710349.1|	-	0.055	12.9	0.4	0.084	12.3	0.3	1.2	1	0	0	1	1	1	0	RecR	protein
zf-C3HC4_3	PF13920.1	gi|297616209|ref|YP_003710349.1|	-	0.063	12.9	1.5	0.11	12.1	1.0	1.4	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|297616209|ref|YP_003710349.1|	-	0.068	12.9	0.5	0.094	12.5	0.3	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
DNA_ligase_ZBD	PF03119.11	gi|297616209|ref|YP_003710349.1|	-	0.074	12.7	0.6	0.074	12.7	0.4	1.7	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Ribosomal_L37e	PF01907.14	gi|297616209|ref|YP_003710349.1|	-	0.13	12.0	1.0	0.19	11.5	0.7	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L37e
DUF1272	PF06906.6	gi|297616209|ref|YP_003710349.1|	-	0.23	11.3	1.9	0.3	10.9	1.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-NADH-PPase	PF09297.6	gi|297616209|ref|YP_003710349.1|	-	0.31	10.5	3.7	2.2	7.8	0.4	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|297616209|ref|YP_003710349.1|	-	0.53	9.9	5.4	5.6	6.7	0.4	2.2	1	1	1	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Nudix_N_2	PF14803.1	gi|297616209|ref|YP_003710349.1|	-	0.62	9.7	4.4	1.2	8.9	0.5	2.3	1	1	1	2	2	2	0	Nudix	N-terminal
Rad50_zn_hook	PF04423.9	gi|297616209|ref|YP_003710349.1|	-	1.5	8.3	6.4	0.85	9.1	0.7	2.2	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
Cys_rich_CPCC	PF14206.1	gi|297616209|ref|YP_003710349.1|	-	1.6	8.3	3.6	3.2	7.3	2.5	1.5	1	1	0	1	1	1	0	Cysteine-rich	CPCC
zf-ISL3	PF14690.1	gi|297616209|ref|YP_003710349.1|	-	1.8	8.6	6.3	2.8	8.0	0.9	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Ribosomal_S14	PF00253.16	gi|297616209|ref|YP_003710349.1|	-	1.9	7.9	5.3	3.2	7.2	0.3	2.3	1	1	1	2	2	2	0	Ribosomal	protein	S14p/S29e
zf-ribbon_3	PF13248.1	gi|297616209|ref|YP_003710349.1|	-	2.9	7.2	5.7	18	4.7	0.9	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|297616209|ref|YP_003710349.1|	-	4.6	6.6	6.0	90	2.5	4.2	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
RRN7	PF11781.3	gi|297616209|ref|YP_003710349.1|	-	5	6.7	6.1	10	5.7	0.3	2.2	1	1	1	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
EIF_2_alpha	PF07541.7	gi|124028479|ref|YP_001013799.1|	-	3.8e-30	103.9	0.2	8e-30	102.8	0.1	1.5	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|124028479|ref|YP_001013799.1|	-	1.1e-13	51.0	0.6	1.9e-13	50.2	0.1	1.7	2	0	0	2	2	2	1	S1	RNA	binding	domain
Jag_N	PF14804.1	gi|124028479|ref|YP_001013799.1|	-	0.5	10.4	3.8	7.9	6.5	0.3	3.6	4	0	0	4	4	4	0	Jag	N-terminus
Ribosomal_S7	PF00177.16	gi|124028479|ref|YP_001013799.1|	-	0.55	9.7	5.0	3	7.3	0.0	3.0	1	1	1	3	3	3	0	Ribosomal	protein	S7p/S5e
Ribosomal_S27e	PF01667.12	gi|124028480|ref|YP_001013800.1|	-	4.1e-20	71.0	0.6	4.7e-20	70.8	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
DNA_ligase_ZBD	PF03119.11	gi|124028480|ref|YP_001013800.1|	-	0.00062	19.4	3.4	0.17	11.5	0.1	2.2	2	0	0	2	2	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF3797	PF12677.2	gi|124028480|ref|YP_001013800.1|	-	0.00095	18.7	0.7	0.023	14.2	0.0	2.1	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF3797)
Lar_restr_allev	PF14354.1	gi|124028480|ref|YP_001013800.1|	-	0.0016	18.6	0.1	0.0022	18.2	0.1	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|124028480|ref|YP_001013800.1|	-	0.0025	17.1	0.4	0.0034	16.6	0.3	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|124028480|ref|YP_001013800.1|	-	0.0077	15.4	0.8	0.76	9.0	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124028480|ref|YP_001013800.1|	-	0.017	14.5	1.9	0.32	10.5	1.5	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|124028480|ref|YP_001013800.1|	-	0.033	13.8	0.0	0.038	13.6	0.0	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
CcmH	PF03918.9	gi|124028480|ref|YP_001013800.1|	-	0.041	12.8	0.4	0.18	10.7	0.0	1.9	1	1	1	2	2	2	0	Cytochrome	C	biogenesis	protein
Zn-ribbon_8	PF09723.5	gi|124028480|ref|YP_001013800.1|	-	0.071	13.0	1.0	1.3	9.0	1.2	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-ISL3	PF14690.1	gi|124028480|ref|YP_001013800.1|	-	0.074	13.0	0.3	1.3	9.0	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF35_N	PF12172.3	gi|124028480|ref|YP_001013800.1|	-	0.11	12.4	4.7	0.69	9.9	3.3	2.1	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
A2L_zn_ribbon	PF08792.5	gi|124028480|ref|YP_001013800.1|	-	0.13	11.7	0.1	7.8	6.0	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|124028480|ref|YP_001013800.1|	-	0.17	11.5	1.4	1.8	8.2	1.0	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Zn_Tnp_IS1595	PF12760.2	gi|124028480|ref|YP_001013800.1|	-	0.18	11.5	1.1	0.29	10.9	0.8	1.4	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
Desulfoferrod_N	PF06397.7	gi|124028480|ref|YP_001013800.1|	-	0.28	10.5	7.2	1.3	8.4	0.1	3.0	2	1	1	3	3	3	0	Desulfoferrodoxin,	N-terminal	domain
Ribosomal_L44	PF00935.14	gi|124028481|ref|YP_001013801.1|	-	2.9e-29	100.8	12.1	3.9e-29	100.4	8.4	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L44
Mu-like_Com	PF10122.4	gi|124028481|ref|YP_001013801.1|	-	0.0019	17.2	3.3	0.45	9.6	0.3	2.2	2	0	0	2	2	2	2	Mu-like	prophage	protein	Com
zf-ISL3	PF14690.1	gi|124028481|ref|YP_001013801.1|	-	0.0029	17.5	5.7	0.061	13.3	0.6	2.4	2	0	0	2	2	2	2	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-FPG_IleRS	PF06827.9	gi|124028481|ref|YP_001013801.1|	-	0.064	12.9	2.6	0.28	10.8	0.2	2.3	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Yippee-Mis18	PF03226.9	gi|124028481|ref|YP_001013801.1|	-	0.064	13.3	0.2	0.091	12.8	0.1	1.2	1	0	0	1	1	1	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
DUF1660	PF07874.6	gi|124028481|ref|YP_001013801.1|	-	0.071	13.3	1.4	0.46	10.7	0.1	2.1	2	0	0	2	2	2	0	Prophage	protein	(DUF1660)
DM	PF00751.13	gi|124028481|ref|YP_001013801.1|	-	0.1	12.1	5.4	2.9	7.4	0.7	2.4	2	0	0	2	2	2	0	DM	DNA	binding	domain
PHD_2	PF13831.1	gi|124028481|ref|YP_001013801.1|	-	0.16	11.2	1.3	2.8	7.3	0.0	2.4	3	0	0	3	3	3	0	PHD-finger
zinc_ribbon_5	PF13719.1	gi|124028481|ref|YP_001013801.1|	-	0.18	11.4	4.8	0.86	9.2	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|124028481|ref|YP_001013801.1|	-	0.18	11.0	0.9	14	5.0	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|124028481|ref|YP_001013801.1|	-	0.19	11.4	4.7	0.76	9.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|124028481|ref|YP_001013801.1|	-	0.22	10.7	1.3	1.2	8.3	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Ribosomal_L33	PF00471.15	gi|124028481|ref|YP_001013801.1|	-	0.23	11.7	0.5	0.23	11.7	0.3	2.8	2	1	0	2	2	2	0	Ribosomal	protein	L33
zinc_ribbon_2	PF13240.1	gi|124028481|ref|YP_001013801.1|	-	0.32	10.5	2.8	13	5.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|124028481|ref|YP_001013801.1|	-	1.1	9.1	3.9	5.8	6.8	2.7	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
Rdx	PF10262.4	gi|124028481|ref|YP_001013801.1|	-	4.4	7.3	6.0	0.89	9.6	0.4	2.3	1	1	2	3	3	3	0	Rdx	family
TRP_2	PF08344.6	gi|124028482|ref|YP_001013802.1|	-	0.0067	16.3	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	Transient	receptor	ion	channel	II
DNA_primase_S	PF01896.14	gi|124028483|ref|YP_001013803.1|	-	6.8e-14	51.8	0.0	1.4e-13	50.9	0.0	1.5	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
PCNA_C	PF02747.10	gi|124028484|ref|YP_001013804.1|	-	2.7e-15	56.4	0.7	4.2e-15	55.7	0.2	1.5	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
PCNA_N	PF00705.13	gi|124028484|ref|YP_001013804.1|	-	4.3e-14	52.1	0.0	1.3e-13	50.5	0.0	1.8	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad1	PF02144.11	gi|124028484|ref|YP_001013804.1|	-	1.2e-07	30.8	0.1	2.2e-07	29.9	0.1	1.4	1	0	0	1	1	1	1	Repair	protein	Rad1/Rec1/Rad17
TFIIS_C	PF01096.13	gi|124028485|ref|YP_001013805.1|	-	3.3e-20	71.4	8.1	6.8e-19	67.2	1.2	3.1	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|124028485|ref|YP_001013805.1|	-	1e-10	41.0	5.2	1.4e-08	34.2	0.2	3.2	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DUF2387	PF09526.5	gi|124028485|ref|YP_001013805.1|	-	3.3e-09	36.5	4.1	0.00013	21.8	0.2	2.2	2	0	0	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
DZR	PF12773.2	gi|124028485|ref|YP_001013805.1|	-	2.6e-08	33.5	2.7	0.00084	19.1	0.3	2.3	2	0	0	2	2	2	2	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|124028485|ref|YP_001013805.1|	-	1.1e-07	31.5	10.5	0.00062	19.5	0.5	2.7	2	1	0	2	2	2	2	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|124028485|ref|YP_001013805.1|	-	4.9e-07	28.9	8.5	0.00025	20.3	0.2	3.4	3	1	0	3	3	2	2	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|124028485|ref|YP_001013805.1|	-	7.4e-07	28.7	7.0	0.0018	17.8	0.6	2.6	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|124028485|ref|YP_001013805.1|	-	1.1e-06	28.3	7.4	1.6e-06	27.7	0.1	2.7	2	1	0	2	2	2	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.1	gi|124028485|ref|YP_001013805.1|	-	1.4e-06	27.2	10.6	0.13	11.4	0.1	4.1	4	0	0	4	4	4	3	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|124028485|ref|YP_001013805.1|	-	1.5e-06	28.0	2.8	0.82	9.7	0.1	3.6	3	1	1	4	4	3	3	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-TFIIB	PF13453.1	gi|124028485|ref|YP_001013805.1|	-	4.9e-05	22.4	0.7	4.9e-05	22.4	0.5	2.9	2	1	0	2	2	2	1	Transcription	factor	zinc-finger
Nudix_N_2	PF14803.1	gi|124028485|ref|YP_001013805.1|	-	4.9e-05	22.9	10.8	0.0016	18.1	1.7	3.6	3	1	0	3	3	3	1	Nudix	N-terminal
UPF0547	PF10571.4	gi|124028485|ref|YP_001013805.1|	-	5.9e-05	22.6	15.0	2	8.1	0.0	4.5	5	0	0	5	5	4	1	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.15	gi|124028485|ref|YP_001013805.1|	-	7.6e-05	22.5	12.2	0.16	11.8	0.0	4.2	4	0	0	4	4	4	2	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|124028485|ref|YP_001013805.1|	-	8.2e-05	22.4	7.3	0.029	14.3	0.5	3.7	3	1	0	3	3	3	1	Zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|124028485|ref|YP_001013805.1|	-	0.00018	20.9	9.9	0.06	12.8	0.1	3.6	4	0	0	4	4	3	1	NADH	pyrophosphatase	zinc	ribbon	domain
Cys_rich_CPCC	PF14206.1	gi|124028485|ref|YP_001013805.1|	-	0.00062	19.2	4.8	0.018	14.5	0.1	3.1	3	0	0	3	3	3	1	Cysteine-rich	CPCC
Zn_ribbon_recom	PF13408.1	gi|124028485|ref|YP_001013805.1|	-	0.0012	19.0	6.3	0.0026	18.0	0.1	2.5	2	1	0	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
Lar_restr_allev	PF14354.1	gi|124028485|ref|YP_001013805.1|	-	0.0012	19.0	7.3	0.078	13.2	1.9	2.7	1	1	1	2	2	2	1	Restriction	alleviation	protein	Lar
zinc_ribbon_2	PF13240.1	gi|124028485|ref|YP_001013805.1|	-	0.0093	15.4	14.8	0.45	10.0	0.2	4.1	4	0	0	4	4	4	1	zinc-ribbon	domain
zf-tcix	PF14952.1	gi|124028485|ref|YP_001013805.1|	-	0.017	14.4	8.2	2.1	7.7	0.0	4.0	4	0	0	4	4	4	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-C4_Topoisom	PF01396.14	gi|124028485|ref|YP_001013805.1|	-	0.018	14.5	9.2	0.091	12.2	0.1	3.4	4	0	0	4	4	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
TerY-C	PF15616.1	gi|124028485|ref|YP_001013805.1|	-	0.019	14.9	1.4	0.59	10.0	0.3	2.5	2	1	0	2	2	2	0	TerY-C	metal	binding	domain
zf-RING_3	PF14369.1	gi|124028485|ref|YP_001013805.1|	-	0.021	14.7	11.2	2.3	8.2	3.1	3.7	3	1	0	3	3	3	0	zinc-finger
DUF2296	PF10058.4	gi|124028485|ref|YP_001013805.1|	-	0.027	14.2	9.5	0.42	10.3	0.8	3.2	2	2	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Zn_Tnp_IS91	PF14319.1	gi|124028485|ref|YP_001013805.1|	-	0.027	13.9	7.2	1.1	8.7	0.3	2.9	2	1	0	2	2	2	0	Transposase	zinc-binding	domain
IBR	PF01485.16	gi|124028485|ref|YP_001013805.1|	-	0.029	14.2	7.3	0.23	11.3	0.4	2.9	1	1	1	2	2	2	0	IBR	domain
zf-UBP	PF02148.14	gi|124028485|ref|YP_001013805.1|	-	0.031	14.3	2.8	0.38	10.9	0.6	2.6	1	1	1	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
GFA	PF04828.9	gi|124028485|ref|YP_001013805.1|	-	0.031	14.2	8.1	0.94	9.4	0.3	3.2	1	1	3	4	4	4	0	Glutathione-dependent	formaldehyde-activating	enzyme
HypA	PF01155.14	gi|124028485|ref|YP_001013805.1|	-	0.034	13.8	6.3	0.12	12.0	0.4	2.8	1	1	2	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
DUF2225	PF09986.4	gi|124028485|ref|YP_001013805.1|	-	0.042	13.3	0.1	0.042	13.3	0.1	2.5	2	1	1	3	3	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
Elf1	PF05129.8	gi|124028485|ref|YP_001013805.1|	-	0.049	13.3	5.6	4.4	7.0	0.1	3.0	2	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
DUF3279	PF11682.3	gi|124028485|ref|YP_001013805.1|	-	0.066	12.7	3.7	0.96	9.0	0.0	3.1	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3279)
Ogr_Delta	PF04606.7	gi|124028485|ref|YP_001013805.1|	-	0.072	12.7	0.7	0.072	12.7	0.5	3.4	3	1	1	4	4	3	0	Ogr/Delta-like	zinc	finger
DUF2487	PF10673.4	gi|124028485|ref|YP_001013805.1|	-	0.088	12.6	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2487)
NOB1_Zn_bind	PF08772.6	gi|124028485|ref|YP_001013805.1|	-	0.098	12.4	0.3	0.098	12.4	0.2	3.7	2	2	2	4	4	4	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
YhfH	PF14149.1	gi|124028485|ref|YP_001013805.1|	-	0.11	12.3	3.0	26	4.6	0.0	4.0	4	0	0	4	4	4	0	YhfH-like	protein
PolC_DP2	PF03833.8	gi|124028485|ref|YP_001013805.1|	-	0.12	10.0	2.4	1.2	6.7	0.2	2.0	1	1	1	2	2	2	0	DNA	polymerase	II	large	subunit	DP2
zinc_ribbon_5	PF13719.1	gi|124028485|ref|YP_001013805.1|	-	0.15	11.6	10.6	12	5.6	0.1	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-Sec23_Sec24	PF04810.10	gi|124028485|ref|YP_001013805.1|	-	0.16	11.5	8.5	0.13	11.8	1.1	3.3	3	1	0	3	3	3	0	Sec23/Sec24	zinc	finger
ADK_lid	PF05191.9	gi|124028485|ref|YP_001013805.1|	-	0.16	11.6	8.9	2.8	7.7	0.0	3.9	4	0	0	4	4	4	0	Adenylate	kinase,	active	site	lid
DUF2082	PF09855.4	gi|124028485|ref|YP_001013805.1|	-	0.17	11.7	9.4	2.9	7.8	0.1	3.7	3	1	1	4	4	4	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Ribosomal_L37e	PF01907.14	gi|124028485|ref|YP_001013805.1|	-	0.23	11.2	9.7	6.5	6.6	0.0	3.5	3	1	0	3	3	3	0	Ribosomal	protein	L37e
zinc_ribbon_4	PF13717.1	gi|124028485|ref|YP_001013805.1|	-	0.32	10.7	11.2	13	5.5	0.2	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
DUF2752	PF10825.3	gi|124028485|ref|YP_001013805.1|	-	0.41	10.7	5.5	4	7.5	0.0	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2752)
DUF35_N	PF12172.3	gi|124028485|ref|YP_001013805.1|	-	0.43	10.5	9.1	19	5.3	0.1	4.0	4	0	0	4	4	4	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Terminase_GpA	PF05876.7	gi|124028485|ref|YP_001013805.1|	-	0.54	8.5	5.9	1.4	7.1	0.6	2.1	1	1	1	2	2	2	0	Phage	terminase	large	subunit	(GpA)
A2L_zn_ribbon	PF08792.5	gi|124028485|ref|YP_001013805.1|	-	0.85	9.1	8.7	6.5	6.3	0.1	3.7	4	0	0	4	4	4	0	A2L	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|124028485|ref|YP_001013805.1|	-	0.92	9.3	11.1	0.2	11.4	0.7	3.1	3	1	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ZPR1	PF03367.8	gi|124028485|ref|YP_001013805.1|	-	0.97	8.5	5.6	4.9	6.2	0.0	3.0	3	1	1	4	4	3	0	ZPR1	zinc-finger	domain
DNA_ligase_ZBD	PF03119.11	gi|124028485|ref|YP_001013805.1|	-	1.9	8.2	9.4	9.7	5.9	0.0	3.4	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
RNHCP	PF12647.2	gi|124028485|ref|YP_001013805.1|	-	1.9	8.3	7.2	3.6	7.4	1.8	2.8	1	1	2	3	3	3	0	RNHCP	domain
FYDLN_acid	PF09538.5	gi|124028485|ref|YP_001013805.1|	-	2	9.0	7.2	4.1	8.0	0.3	3.1	2	1	1	3	3	2	0	Protein	of	unknown	function	(FYDLN_acid)
Ribosomal_L32p	PF01783.18	gi|124028485|ref|YP_001013805.1|	-	2.3	8.4	7.4	5	7.3	0.1	3.3	3	1	0	3	3	2	0	Ribosomal	L32p	protein	family
DUF1610	PF07754.6	gi|124028485|ref|YP_001013805.1|	-	3.2	7.9	17.3	2.3	8.3	0.3	4.2	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1610)
zf-FPG_IleRS	PF06827.9	gi|124028485|ref|YP_001013805.1|	-	3.8	7.2	15.4	10	5.9	0.2	3.5	3	1	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
zf-RING_4	PF14570.1	gi|124028485|ref|YP_001013805.1|	-	4.3	6.9	8.3	35	4.0	0.1	3.4	3	1	0	3	3	3	0	RING/Ubox	like	zinc-binding	domain
FdhE	PF04216.7	gi|124028485|ref|YP_001013805.1|	-	5.3	6.6	13.1	0.14	11.8	1.1	2.6	1	1	1	3	3	3	0	Protein	involved	in	formate	dehydrogenase	formation
zf-C2H2_4	PF13894.1	gi|124028485|ref|YP_001013805.1|	-	6	7.4	9.0	77	3.9	0.1	3.9	4	0	0	4	4	3	0	C2H2-type	zinc	finger
zf-CSL	PF05207.8	gi|124028485|ref|YP_001013805.1|	-	6	6.4	6.6	3.9	7.0	0.4	2.6	2	1	0	2	2	2	0	CSL	zinc	finger
Tnp_zf-ribbon_2	PF13842.1	gi|124028485|ref|YP_001013805.1|	-	6.2	7.3	9.8	18	5.8	0.2	3.3	2	2	1	3	3	3	0	DDE_Tnp_1-like	zinc-ribbon
Rdx	PF10262.4	gi|124028485|ref|YP_001013805.1|	-	7.3	6.6	5.9	9.6	6.3	0.0	3.0	3	1	1	4	4	2	0	Rdx	family
C1_1	PF00130.17	gi|124028485|ref|YP_001013805.1|	-	7.6	6.3	7.8	2.3	8.0	0.4	2.6	2	1	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L37ae	PF01780.14	gi|124028485|ref|YP_001013805.1|	-	8.5	6.3	8.2	0.73	9.7	0.7	2.7	2	2	0	2	2	2	0	Ribosomal	L37ae	protein	family
Prim_Zn_Ribbon	PF08273.7	gi|124028485|ref|YP_001013805.1|	-	9.2	6.4	10.0	1	9.4	0.6	2.6	2	1	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
RNA_pol_L_2	PF13656.1	gi|124028487|ref|YP_001013807.1|	-	2.1e-21	75.1	0.0	2.5e-21	74.8	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.19	gi|124028487|ref|YP_001013807.1|	-	7.2e-05	21.8	0.0	0.00011	21.2	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
DUF2514	PF10721.4	gi|124028487|ref|YP_001013807.1|	-	0.032	13.9	0.0	0.051	13.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2514)
DUF2067	PF09840.4	gi|124028488|ref|YP_001013808.1|	-	2.2e-59	200.1	1.0	2.5e-59	199.9	0.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
YukD	PF08817.5	gi|124028488|ref|YP_001013808.1|	-	0.055	14.0	0.1	3.2	8.3	0.0	2.9	3	1	0	3	3	3	0	WXG100	protein	secretion	system	(Wss),	protein	YukD
fn1	PF00039.13	gi|124028488|ref|YP_001013808.1|	-	0.12	12.2	0.2	0.23	11.2	0.1	1.5	1	0	0	1	1	1	0	Fibronectin	type	I	domain
ECR1_N	PF14382.1	gi|124028489|ref|YP_001013809.1|	-	4.5e-11	41.8	0.0	5.3e-10	38.4	0.0	2.3	2	0	0	2	2	2	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
zf-NADH-PPase	PF09297.6	gi|124028489|ref|YP_001013809.1|	-	1.5e-05	24.3	0.9	2.3e-05	23.7	0.6	1.3	1	0	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|124028489|ref|YP_001013809.1|	-	0.005	17.0	0.1	0.0087	16.2	0.0	1.3	1	0	0	1	1	1	1	Recombinase	zinc	beta	ribbon	domain
DZR	PF12773.2	gi|124028489|ref|YP_001013809.1|	-	0.011	15.4	0.3	0.021	14.6	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|124028489|ref|YP_001013809.1|	-	0.017	14.3	0.9	0.41	9.9	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|124028489|ref|YP_001013809.1|	-	0.041	13.3	1.0	0.8	9.2	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|124028489|ref|YP_001013809.1|	-	0.048	13.3	0.2	0.071	12.7	0.1	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.1	gi|124028489|ref|YP_001013809.1|	-	0.1	12.3	0.1	0.18	11.5	0.1	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
C1_1	PF00130.17	gi|124028489|ref|YP_001013809.1|	-	0.13	12.0	0.2	0.21	11.3	0.2	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Nudix_N_2	PF14803.1	gi|124028489|ref|YP_001013809.1|	-	0.14	11.8	3.5	0.45	10.2	2.4	1.9	1	1	1	2	2	2	0	Nudix	N-terminal
zf-dskA_traR	PF01258.12	gi|124028489|ref|YP_001013809.1|	-	2.1	8.1	4.6	50	3.7	0.2	3.6	4	0	0	4	4	4	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Methyltransf_26	PF13659.1	gi|124028490|ref|YP_001013810.1|	-	8.8e-05	22.5	0.0	0.0001	22.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028490|ref|YP_001013810.1|	-	0.001	19.3	0.0	0.0013	19.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|124028490|ref|YP_001013810.1|	-	0.0064	15.6	0.2	0.0089	15.1	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|124028490|ref|YP_001013810.1|	-	0.021	14.4	0.0	0.028	13.9	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124028490|ref|YP_001013810.1|	-	0.043	14.3	0.0	0.075	13.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124028490|ref|YP_001013810.1|	-	0.082	13.4	0.1	0.12	13.0	0.1	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|124028490|ref|YP_001013810.1|	-	0.14	11.5	0.0	0.25	10.6	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	small	domain
Diphthamide_syn	PF01866.12	gi|124028491|ref|YP_001013811.1|	-	2.3e-62	211.0	0.0	2.9e-62	210.6	0.0	1.1	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
Ribosomal_L16	PF00252.13	gi|124028492|ref|YP_001013812.1|	-	1.8e-35	121.5	0.1	2.1e-35	121.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
AsnC_trans_reg	PF01037.16	gi|124028492|ref|YP_001013812.1|	-	0.25	11.0	0.8	4.4	7.0	0.1	2.7	2	1	1	3	3	3	0	AsnC	family
UPF0020	PF01170.13	gi|124028493|ref|YP_001013813.1|	-	1.6e-40	138.5	0.1	3e-40	137.6	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
THUMP	PF02926.12	gi|124028493|ref|YP_001013813.1|	-	5.3e-19	68.5	0.2	9.1e-19	67.7	0.2	1.4	1	0	0	1	1	1	1	THUMP	domain
Methyltransf_26	PF13659.1	gi|124028493|ref|YP_001013813.1|	-	4.6e-14	52.4	0.1	1.7e-13	50.6	0.0	1.9	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|124028493|ref|YP_001013813.1|	-	1.3e-10	41.0	0.0	3.1e-10	39.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|124028493|ref|YP_001013813.1|	-	1.5e-08	34.4	0.0	2.4e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.9	gi|124028493|ref|YP_001013813.1|	-	2.9e-08	33.2	0.0	5.2e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|124028493|ref|YP_001013813.1|	-	2.2e-06	28.1	0.0	3.9e-05	24.1	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|124028493|ref|YP_001013813.1|	-	2.5e-05	24.5	0.0	0.00016	21.9	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124028493|ref|YP_001013813.1|	-	0.00028	21.3	0.0	0.00087	19.7	0.0	1.8	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|124028493|ref|YP_001013813.1|	-	0.00029	20.4	0.0	0.00064	19.3	0.0	1.5	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_3	PF01596.12	gi|124028493|ref|YP_001013813.1|	-	0.0017	17.4	0.0	0.0031	16.6	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase
PrmA	PF06325.8	gi|124028493|ref|YP_001013813.1|	-	0.0026	16.9	0.1	0.0066	15.6	0.0	1.6	2	0	0	2	2	2	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
N6_N4_Mtase	PF01555.13	gi|124028493|ref|YP_001013813.1|	-	0.0028	17.1	0.0	0.0065	15.9	0.0	1.5	1	0	0	1	1	1	1	DNA	methylase
Ubie_methyltran	PF01209.13	gi|124028493|ref|YP_001013813.1|	-	0.0081	15.3	0.0	0.023	13.8	0.0	1.7	2	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Cons_hypoth95	PF03602.10	gi|124028493|ref|YP_001013813.1|	-	0.017	14.4	0.0	0.031	13.6	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
SpoU_methylase	PF00588.14	gi|124028494|ref|YP_001013814.1|	-	3.4e-29	101.5	0.0	4.7e-29	101.0	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.4	gi|124028494|ref|YP_001013814.1|	-	2.3e-06	27.2	0.0	9.8e-05	21.9	0.0	2.3	1	1	0	1	1	1	1	SAM-dependent	RNA	methyltransferase
Semialdhyde_dh	PF01118.19	gi|124028494|ref|YP_001013814.1|	-	0.1	12.8	0.0	0.27	11.5	0.0	1.8	1	1	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
OTCace	PF00185.19	gi|124028494|ref|YP_001013814.1|	-	0.12	12.1	0.0	0.16	11.8	0.0	1.2	1	0	0	1	1	1	0	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Methyltransf_26	PF13659.1	gi|124028495|ref|YP_001013815.1|	-	2.3e-11	43.7	0.0	4e-11	42.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|124028495|ref|YP_001013815.1|	-	3.2e-09	36.3	0.0	4e-09	36.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|124028495|ref|YP_001013815.1|	-	2.6e-07	30.0	0.3	3.4e-07	29.6	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|124028495|ref|YP_001013815.1|	-	1.3e-05	24.8	0.1	1.9e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|124028495|ref|YP_001013815.1|	-	0.00016	22.2	0.0	0.00021	21.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|124028495|ref|YP_001013815.1|	-	0.00026	20.5	0.1	0.00036	20.1	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Cons_hypoth95	PF03602.10	gi|124028495|ref|YP_001013815.1|	-	0.00097	18.5	0.0	0.0012	18.2	0.0	1.1	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.1	gi|124028495|ref|YP_001013815.1|	-	0.0011	19.2	0.0	0.0019	18.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|124028495|ref|YP_001013815.1|	-	0.0027	18.1	0.0	0.014	15.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|124028495|ref|YP_001013815.1|	-	0.01	16.2	0.1	0.03	14.8	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|124028495|ref|YP_001013815.1|	-	0.017	14.8	0.0	0.021	14.5	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.11	gi|124028495|ref|YP_001013815.1|	-	0.025	14.1	0.0	0.034	13.7	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
UPF0020	PF01170.13	gi|124028495|ref|YP_001013815.1|	-	0.031	13.8	0.0	0.045	13.3	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_16	PF10294.4	gi|124028495|ref|YP_001013815.1|	-	0.036	13.5	0.1	0.049	13.0	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
PCMT	PF01135.14	gi|124028495|ref|YP_001013815.1|	-	0.064	12.7	0.0	0.089	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NodS	PF05401.6	gi|124028495|ref|YP_001013815.1|	-	0.091	12.1	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Methyltransf_23	PF13489.1	gi|124028495|ref|YP_001013815.1|	-	0.1	12.3	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.15	gi|124028496|ref|YP_001013816.1|	-	2.5e-25	88.9	0.0	6.5e-25	87.6	0.0	1.5	1	1	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|124028496|ref|YP_001013816.1|	-	0.019	15.0	0.1	0.075	13.0	0.0	1.9	2	1	0	2	2	2	0	Methyltransferase	domain
DUF655	PF04919.7	gi|124028497|ref|YP_001013817.1|	-	9.3e-58	194.8	0.7	1.2e-57	194.4	0.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.1	gi|124028497|ref|YP_001013817.1|	-	3.2e-05	23.8	0.1	0.00019	21.4	0.0	2.2	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|124028497|ref|YP_001013817.1|	-	0.00014	21.7	0.1	0.0055	16.6	0.0	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.11	gi|124028498|ref|YP_001013818.1|	-	1.2e-13	51.0	0.0	1.4e-13	50.8	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
ANTAR	PF03861.9	gi|124028498|ref|YP_001013818.1|	-	0.096	12.2	0.0	0.91	9.1	0.0	2.4	2	1	0	2	2	2	0	ANTAR	domain
Ribosomal_L21e	PF01157.13	gi|124028499|ref|YP_001013819.1|	-	6.4e-29	99.6	1.4	7.2e-29	99.5	1.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
THUMP	PF02926.12	gi|124028500|ref|YP_001013820.1|	-	8.4e-16	58.1	2.7	3.4e-15	56.1	0.4	2.6	3	0	0	3	3	3	1	THUMP	domain
SRP54	PF00448.17	gi|124028501|ref|YP_001013821.1|	-	3.3e-71	238.8	0.1	4.8e-71	238.2	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|124028501|ref|YP_001013821.1|	-	2e-30	105.0	0.7	3.1e-29	101.3	0.2	2.5	1	1	1	2	2	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|124028501|ref|YP_001013821.1|	-	4e-12	46.0	1.6	1e-11	44.7	0.0	2.5	3	0	0	3	3	2	1	SRP54-type	protein,	helical	bundle	domain
cobW	PF02492.14	gi|124028501|ref|YP_001013821.1|	-	1.5e-06	27.7	0.1	1e-05	25.0	0.0	2.2	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.18	gi|124028501|ref|YP_001013821.1|	-	1.7e-06	27.5	1.7	9.5e-06	25.1	0.4	2.5	2	1	0	2	2	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MobB	PF03205.9	gi|124028501|ref|YP_001013821.1|	-	7.3e-06	25.7	0.7	6.2e-05	22.7	0.1	2.3	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|124028501|ref|YP_001013821.1|	-	4.8e-05	23.2	0.0	0.00016	21.5	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
ArgK	PF03308.11	gi|124028501|ref|YP_001013821.1|	-	6.2e-05	21.9	1.8	0.0002	20.2	1.2	1.7	1	1	0	1	1	1	1	ArgK	protein
AAA_22	PF13401.1	gi|124028501|ref|YP_001013821.1|	-	7.7e-05	22.8	0.0	0.0043	17.1	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|124028501|ref|YP_001013821.1|	-	0.00081	18.9	0.6	0.0021	17.5	0.4	2.1	1	1	0	1	1	1	1	AAA-like	domain
AAA_30	PF13604.1	gi|124028501|ref|YP_001013821.1|	-	0.0011	18.6	3.7	0.003	17.1	0.6	2.8	3	1	0	3	3	3	1	AAA	domain
AAA_17	PF13207.1	gi|124028501|ref|YP_001013821.1|	-	0.0011	19.7	1.0	0.0049	17.6	0.2	2.6	2	1	0	2	2	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|124028501|ref|YP_001013821.1|	-	0.0033	16.5	0.0	0.0066	15.5	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
LpxK	PF02606.9	gi|124028501|ref|YP_001013821.1|	-	0.0051	15.7	0.3	0.017	14.0	0.1	1.8	2	0	0	2	2	2	1	Tetraacyldisaccharide-1-P	4'-kinase
ATP_bind_1	PF03029.12	gi|124028501|ref|YP_001013821.1|	-	0.0066	16.0	0.6	0.023	14.2	0.2	2.1	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
DUF373	PF04123.8	gi|124028501|ref|YP_001013821.1|	-	0.011	14.7	0.2	0.021	13.8	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
AAA_16	PF13191.1	gi|124028501|ref|YP_001013821.1|	-	0.011	15.6	0.0	0.11	12.4	0.0	2.5	3	0	0	3	3	3	0	AAA	ATPase	domain
E3_UbLigase_R4	PF13764.1	gi|124028501|ref|YP_001013821.1|	-	0.018	12.9	0.2	0.025	12.5	0.1	1.2	1	0	0	1	1	1	0	E3	ubiquitin-protein	ligase	UBR4
6PF2K	PF01591.13	gi|124028501|ref|YP_001013821.1|	-	0.026	13.6	0.0	0.05	12.6	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA	PF00004.24	gi|124028501|ref|YP_001013821.1|	-	0.034	14.3	1.1	0.85	9.8	0.2	3.2	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
APS_kinase	PF01583.15	gi|124028501|ref|YP_001013821.1|	-	0.05	13.2	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NTPase_1	PF03266.10	gi|124028501|ref|YP_001013821.1|	-	0.059	13.0	1.4	0.6	9.8	0.1	2.9	3	0	0	3	3	3	0	NTPase
AAA_5	PF07728.9	gi|124028501|ref|YP_001013821.1|	-	0.077	12.7	0.2	0.44	10.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.1	gi|124028501|ref|YP_001013821.1|	-	0.14	12.1	0.2	0.29	11.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.12	gi|124028501|ref|YP_001013821.1|	-	0.33	10.3	2.1	0.62	9.4	0.1	2.4	2	0	0	2	2	2	0	Thymidylate	kinase
eIF-5a	PF01287.15	gi|124028502|ref|YP_001013822.1|	-	1.3e-15	57.0	1.5	2.1e-15	56.3	1.0	1.3	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|124028502|ref|YP_001013822.1|	-	7.5e-06	25.7	0.1	1.9e-05	24.4	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
EFP	PF01132.15	gi|124028502|ref|YP_001013822.1|	-	0.0043	16.6	0.6	0.0077	15.8	0.4	1.4	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	OB	domain
KOW	PF00467.24	gi|124028502|ref|YP_001013822.1|	-	0.0048	16.5	1.6	0.016	14.8	0.3	2.3	2	0	0	2	2	2	1	KOW	motif
ABC_tran	PF00005.22	gi|124028504|ref|YP_001013824.1|	-	0.021	15.0	0.3	0.03	14.6	0.2	1.2	1	0	0	1	1	1	0	ABC	transporter
Robl_LC7	PF03259.12	gi|124028505|ref|YP_001013825.1|	-	3.3e-07	29.7	1.2	4.2e-07	29.4	0.8	1.1	1	0	0	1	1	1	1	Roadblock/LC7	domain
MAPKK1_Int	PF08923.5	gi|124028505|ref|YP_001013825.1|	-	0.0016	18.0	1.0	0.002	17.7	0.7	1.1	1	0	0	1	1	1	1	Mitogen-activated	protein	kinase	kinase	1	interacting
Myco_19_kDa	PF05481.7	gi|124028505|ref|YP_001013825.1|	-	0.091	12.5	1.1	0.11	12.2	0.8	1.3	1	0	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
TauE	PF01925.14	gi|124028506|ref|YP_001013826.1|	-	5.7e-41	140.5	52.7	6.6e-41	140.3	36.5	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF4173	PF13777.1	gi|124028506|ref|YP_001013826.1|	-	0.018	14.3	7.8	0.024	13.9	4.7	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4173)
CN_hydrolase	PF00795.17	gi|124028507|ref|YP_001013827.1|	-	6.4e-29	100.6	0.0	8.5e-29	100.2	0.0	1.2	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
DUF1604	PF07713.8	gi|124028508|ref|YP_001013828.1|	-	0.12	12.1	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1604)