# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- AAA_22 PF13401.6 gi|385805052|ref|YP_005841450.1| - 0.16 12.2 0.0 0.89 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 gi|385805055|ref|YP_005841453.1| - 0.01 15.2 11.1 0.011 15.0 11.1 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF983 PF06170.12 gi|385805055|ref|YP_005841453.1| - 2.4 8.6 8.4 0.28 11.6 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF983) DUF917 PF06032.12 gi|385805057|ref|YP_005841455.1| - 1.6e-97 326.5 0.0 1.8e-97 326.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF917) DUF4807 PF16065.5 gi|385805057|ref|YP_005841455.1| - 0.037 13.7 0.0 0.067 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4807) TauE PF01925.19 gi|385805058|ref|YP_005841456.1| - 8.8e-54 182.6 38.1 1e-53 182.4 38.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1422 PF07226.11 gi|385805058|ref|YP_005841456.1| - 0.17 11.9 7.0 1.9 8.5 0.1 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1422) Sulf_transp PF04143.14 gi|385805060|ref|YP_005841458.1| - 2.3e-23 83.3 20.1 2.3e-23 83.3 20.1 1.7 2 1 0 2 2 2 1 Sulphur transport UCR_UQCRX_QCR9 PF05365.12 gi|385805060|ref|YP_005841458.1| - 1.6 8.8 9.5 0.58 10.1 0.2 3.8 4 0 0 4 4 4 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like zinc_ribbon_4 PF13717.6 gi|385805063|ref|YP_005841461.1| - 0.00062 19.6 1.4 0.21 11.5 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385805063|ref|YP_005841461.1| - 0.0039 17.1 1.2 0.34 10.9 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zf-Sec23_Sec24 PF04810.15 gi|385805063|ref|YP_005841461.1| - 0.0063 16.5 0.6 0.46 10.6 0.0 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger CpXC PF14353.6 gi|385805063|ref|YP_005841461.1| - 0.011 15.8 0.2 0.82 9.7 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-C6H2 PF15801.5 gi|385805063|ref|YP_005841461.1| - 0.026 14.8 1.4 2.4 8.5 0.0 2.3 2 1 0 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding Mu-like_Com PF10122.9 gi|385805063|ref|YP_005841461.1| - 0.036 13.5 0.5 6.2 6.4 0.3 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-TFIIB PF13453.6 gi|385805063|ref|YP_005841461.1| - 0.037 13.4 3.0 0.31 10.4 3.1 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1 PF03811.13 gi|385805063|ref|YP_005841461.1| - 0.038 13.7 2.8 0.16 11.8 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-ribbon_3 PF13248.6 gi|385805063|ref|YP_005841461.1| - 0.056 12.9 3.5 0.51 9.8 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|385805063|ref|YP_005841461.1| - 0.059 13.8 2.8 1.2 9.7 0.6 2.4 2 0 0 2 2 2 0 Zinc-finger double domain ADK_lid PF05191.14 gi|385805063|ref|YP_005841461.1| - 0.064 13.2 3.3 0.14 12.2 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid HypA PF01155.19 gi|385805063|ref|YP_005841461.1| - 0.079 13.0 0.3 0.11 12.5 0.3 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PADR1 PF08063.12 gi|385805063|ref|YP_005841461.1| - 0.12 12.2 1.1 4.5 7.1 0.1 2.3 2 0 0 2 2 2 0 PADR1 (NUC008) domain zf_CopZ PF18423.1 gi|385805063|ref|YP_005841461.1| - 0.13 12.2 2.2 0.89 9.6 0.2 2.4 2 0 0 2 2 2 0 Zinc binding domain TF_Zn_Ribbon PF08271.12 gi|385805063|ref|YP_005841461.1| - 0.15 11.6 1.8 2.7 7.6 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|385805063|ref|YP_005841461.1| - 0.16 11.9 2.1 0.55 10.2 1.8 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|385805063|ref|YP_005841461.1| - 0.17 11.8 3.3 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal FYDLN_acid PF09538.10 gi|385805063|ref|YP_005841461.1| - 0.18 12.5 1.7 0.52 11.0 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Cys_rich_KTR PF14205.6 gi|385805063|ref|YP_005841461.1| - 0.19 11.5 2.5 25 4.8 0.0 3.0 3 0 0 3 3 3 0 Cysteine-rich KTR TFIIS_C PF01096.18 gi|385805063|ref|YP_005841461.1| - 0.29 11.0 2.8 8.1 6.4 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|385805063|ref|YP_005841461.1| - 0.29 11.1 5.1 1.5 8.8 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-BED PF02892.15 gi|385805063|ref|YP_005841461.1| - 0.3 11.1 2.2 1.1 9.4 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger TackOD1 PF18551.1 gi|385805063|ref|YP_005841461.1| - 0.4 10.3 2.6 2.5 7.7 2.6 1.9 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 UPF0547 PF10571.9 gi|385805063|ref|YP_005841461.1| - 0.43 10.7 5.4 0.96 9.6 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|385805063|ref|YP_005841461.1| - 0.62 9.8 3.8 12 5.7 0.8 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|385805063|ref|YP_005841461.1| - 1 9.2 6.9 3 7.7 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385805063|ref|YP_005841461.1| - 1.2 9.3 5.7 22 5.3 5.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|385805063|ref|YP_005841461.1| - 7.9 6.6 9.4 2.4 8.3 1.9 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain RMMBL PF07521.12 gi|385805064|ref|YP_005841462.1| - 0.00061 19.7 0.0 0.0018 18.1 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain PIN PF01850.21 gi|385805065|ref|YP_005841463.1| - 1.6e-06 28.6 0.1 1.8e-06 28.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain YtxH PF12732.7 gi|385805066|ref|YP_005841464.1| - 0.0024 18.3 0.9 0.0036 17.8 0.9 1.2 1 0 0 1 1 1 1 YtxH-like protein AAA_23 PF13476.6 gi|385805066|ref|YP_005841464.1| - 0.011 16.3 4.3 0.013 16.0 4.3 1.1 1 0 0 1 1 1 0 AAA domain DUF1779 PF08680.10 gi|385805066|ref|YP_005841464.1| - 0.016 15.4 0.2 0.019 15.2 0.2 1.0 1 0 0 1 1 1 0 TATA-box binding DUF3755 PF12579.8 gi|385805066|ref|YP_005841464.1| - 0.14 11.8 0.3 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) Cecropin PF00272.19 gi|385805070|ref|YP_005841468.1| - 0.067 12.9 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Cecropin family PIN_4 PF13638.6 gi|385805071|ref|YP_005841469.1| - 0.044 14.1 0.2 1 9.6 0.2 2.4 1 1 0 1 1 1 0 PIN domain PG_binding_2 PF08823.11 gi|385805071|ref|YP_005841469.1| - 0.088 13.1 0.2 0.51 10.7 0.1 2.2 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF72 PF01904.18 gi|385805073|ref|YP_005841471.1| - 1.8e-38 132.8 0.0 2.2e-38 132.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Diphthami_syn_2 PF01902.17 gi|385805074|ref|YP_005841472.1| - 1e-16 61.1 0.2 1.3e-16 60.8 0.2 1.0 1 0 0 1 1 1 1 Diphthamide synthase CobD_Cbib PF03186.13 gi|385805076|ref|YP_005841474.1| - 2.4e-71 240.2 0.1 3e-71 239.9 0.1 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Photo_RC PF00124.19 gi|385805076|ref|YP_005841474.1| - 0.016 14.4 3.8 0.027 13.7 3.8 1.3 1 0 0 1 1 1 0 Photosynthetic reaction centre protein TAtT PF16811.5 gi|385805076|ref|YP_005841474.1| - 0.19 11.0 0.1 1.6 7.9 0.0 2.0 2 0 0 2 2 2 0 TRAP transporter T-component CobS PF02654.15 gi|385805077|ref|YP_005841475.1| - 8.3e-33 114.3 3.3 9.6e-33 114.1 3.3 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Aminotran_1_2 PF00155.21 gi|385805078|ref|YP_005841476.1| - 1.9e-40 139.2 0.0 2.3e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|385805078|ref|YP_005841476.1| - 0.00026 20.1 0.0 0.0024 16.9 0.0 2.2 2 1 0 2 2 2 1 Aminotransferase class-V NTP_transf_3 PF12804.7 gi|385805079|ref|YP_005841477.1| - 4.9e-18 66.0 0.0 5.8e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|385805079|ref|YP_005841477.1| - 0.015 14.9 0.0 3.5 7.1 0.0 2.1 2 0 0 2 2 2 0 Nucleotidyl transferase CofC PF01983.16 gi|385805079|ref|YP_005841477.1| - 0.02 14.1 0.1 0.072 12.3 0.0 1.8 2 0 0 2 2 2 0 Guanylyl transferase CofC like PB1 PF00564.24 gi|385805079|ref|YP_005841477.1| - 0.036 14.0 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 PB1 domain IspD PF01128.19 gi|385805079|ref|YP_005841477.1| - 0.059 13.1 0.0 0.089 12.5 0.0 1.6 1 1 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|385805079|ref|YP_005841477.1| - 0.1 12.5 0.0 3.4 7.5 0.0 2.3 3 0 0 3 3 3 0 Cytidylyltransferase BMC PF00936.19 gi|385805079|ref|YP_005841477.1| - 0.16 12.0 0.6 0.38 10.8 0.2 1.8 2 0 0 2 2 2 0 BMC domain CbiZ PF01955.18 gi|385805080|ref|YP_005841478.1| - 1.3e-24 87.3 0.0 1.7e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase PgpA PF04608.13 gi|385805080|ref|YP_005841478.1| - 8.3e-05 22.6 0.0 0.00015 21.8 0.0 1.4 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A DBI_PRT PF02277.17 gi|385805081|ref|YP_005841479.1| - 2e-06 27.3 0.1 2.9e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase DUF167 PF02594.16 gi|385805082|ref|YP_005841480.1| - 3.4e-19 68.7 0.5 1.3e-18 66.9 0.1 1.9 1 1 1 2 2 2 1 Uncharacterised ACR, YggU family COG1872 DUF594 PF04578.13 gi|385805083|ref|YP_005841481.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF594 Methyltr_RsmB-F PF01189.17 gi|385805084|ref|YP_005841482.1| - 1.1e-31 110.0 0.0 1.7e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|385805084|ref|YP_005841482.1| - 1.4e-09 37.8 1.0 3e-09 36.7 0.4 2.0 2 0 0 2 2 2 1 PUA domain Methyltransf_31 PF13847.6 gi|385805084|ref|YP_005841482.1| - 0.00029 20.7 0.0 0.0011 18.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain UPF0113 PF03657.13 gi|385805084|ref|YP_005841482.1| - 0.011 16.0 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain Band_7 PF01145.25 gi|385805085|ref|YP_005841483.1| - 7.7e-29 101.0 2.2 1e-28 100.5 2.2 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|385805085|ref|YP_005841483.1| - 0.0004 20.1 0.3 0.0011 18.8 0.1 1.8 2 1 0 2 2 2 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|385805086|ref|YP_005841484.1| - 2.8e-18 66.1 1.8 1.5e-17 63.7 0.8 2.5 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|385805086|ref|YP_005841484.1| - 6.9e-07 29.3 1.5 1.9e-06 27.9 1.5 1.6 1 1 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|385805086|ref|YP_005841484.1| - 0.00064 18.8 0.1 0.001 18.1 0.1 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Peptidase_S49 PF01343.18 gi|385805086|ref|YP_005841484.1| - 0.003 17.5 1.4 0.0086 16.0 0.8 2.1 1 1 1 2 2 2 1 Peptidase family S49 TrmO PF01980.16 gi|385805087|ref|YP_005841485.1| - 3.1e-29 101.6 0.0 5.3e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 tRNA-methyltransferase O Laminin_II PF06009.12 gi|385805088|ref|YP_005841486.1| - 6.3e-07 29.5 3.3 0.00063 19.8 0.1 2.2 2 0 0 2 2 2 2 Laminin Domain II ZapB PF06005.12 gi|385805088|ref|YP_005841486.1| - 0.0001 22.6 5.7 0.042 14.3 0.1 2.6 2 1 0 2 2 2 2 Cell division protein ZapB V_ATPase_I PF01496.19 gi|385805088|ref|YP_005841486.1| - 0.00014 20.0 0.6 0.00019 19.5 0.6 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family HMMR_N PF15905.5 gi|385805088|ref|YP_005841486.1| - 0.0015 18.1 2.9 0.002 17.6 2.9 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal IFT57 PF10498.9 gi|385805088|ref|YP_005841486.1| - 0.0017 17.4 9.7 0.0088 15.1 7.0 2.0 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 Jnk-SapK_ap_N PF09744.9 gi|385805088|ref|YP_005841486.1| - 0.0031 17.8 1.8 0.0059 16.8 1.6 1.5 1 1 0 1 1 1 1 JNK_SAPK-associated protein-1 EzrA PF06160.12 gi|385805088|ref|YP_005841486.1| - 0.0039 15.4 11.0 0.016 13.4 1.8 2.2 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Spc7 PF08317.11 gi|385805088|ref|YP_005841486.1| - 0.0047 15.8 4.2 0.011 14.7 4.3 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF4201 PF13870.6 gi|385805088|ref|YP_005841486.1| - 0.0073 16.1 1.7 0.013 15.3 1.5 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4201) JIP_LZII PF16471.5 gi|385805088|ref|YP_005841486.1| - 0.0074 16.4 0.6 0.14 12.4 0.1 2.4 1 1 1 2 2 2 1 JNK-interacting protein leucine zipper II AIP3 PF03915.13 gi|385805088|ref|YP_005841486.1| - 0.0088 15.2 1.3 0.013 14.7 1.3 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 APG6_N PF17675.1 gi|385805088|ref|YP_005841486.1| - 0.011 16.2 5.6 0.07 13.7 1.5 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF3584 PF12128.8 gi|385805088|ref|YP_005841486.1| - 0.013 13.0 0.7 0.016 12.7 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rootletin PF15035.6 gi|385805088|ref|YP_005841486.1| - 0.016 15.2 3.2 0.018 15.1 1.9 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TACC_C PF05010.14 gi|385805088|ref|YP_005841486.1| - 0.018 14.8 2.5 0.034 14.0 2.1 1.5 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal LOH1CR12 PF10158.9 gi|385805088|ref|YP_005841486.1| - 0.019 15.0 4.4 0.39 10.7 1.5 2.3 1 1 0 2 2 2 0 Tumour suppressor protein GAS PF13851.6 gi|385805088|ref|YP_005841486.1| - 0.019 14.3 3.4 0.19 11.0 3.1 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.12 gi|385805088|ref|YP_005841486.1| - 0.032 14.3 19.7 0.52 10.3 10.5 2.4 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus LXG PF04740.12 gi|385805088|ref|YP_005841486.1| - 0.036 13.8 13.3 0.042 13.6 5.5 2.4 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF5082 PF16888.5 gi|385805088|ref|YP_005841486.1| - 0.037 14.3 8.8 2.7 8.3 3.0 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF5082) DUF4407 PF14362.6 gi|385805088|ref|YP_005841486.1| - 0.046 13.1 0.7 0.077 12.3 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) KASH_CCD PF14662.6 gi|385805088|ref|YP_005841486.1| - 0.051 13.4 6.3 0.34 10.7 6.5 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH DUF1664 PF07889.12 gi|385805088|ref|YP_005841486.1| - 0.052 13.6 1.2 0.34 10.9 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|385805088|ref|YP_005841486.1| - 0.055 13.7 9.1 0.44 10.7 1.9 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF812 PF05667.11 gi|385805088|ref|YP_005841486.1| - 0.061 12.2 3.8 0.18 10.6 3.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Csm1_N PF18504.1 gi|385805088|ref|YP_005841486.1| - 0.087 13.2 3.4 0.21 12.0 1.1 2.3 1 1 0 2 2 2 0 Csm1 N-terminal domain APG17 PF04108.12 gi|385805088|ref|YP_005841486.1| - 0.1 11.7 8.6 0.24 10.5 6.7 1.9 1 1 1 2 2 2 0 Autophagy protein Apg17 SlyX PF04102.12 gi|385805088|ref|YP_005841486.1| - 0.12 13.0 2.4 0.41 11.3 1.0 2.3 1 1 0 2 2 1 0 SlyX zf-C4H2 PF10146.9 gi|385805088|ref|YP_005841486.1| - 0.12 12.6 0.1 0.19 12.0 0.1 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein PhaP_Bmeg PF09602.10 gi|385805088|ref|YP_005841486.1| - 0.13 12.2 4.2 0.24 11.3 4.2 1.4 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) BLOC1_2 PF10046.9 gi|385805088|ref|YP_005841486.1| - 0.14 12.4 16.0 0.38 11.1 2.9 3.9 2 1 2 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FapA PF03961.13 gi|385805088|ref|YP_005841486.1| - 0.15 10.7 4.2 0.36 9.4 4.2 1.6 1 1 0 1 1 1 0 Flagellar Assembly Protein A Filament PF00038.21 gi|385805088|ref|YP_005841486.1| - 0.16 11.5 6.6 0.14 11.7 3.1 1.8 1 1 1 2 2 2 0 Intermediate filament protein Cast PF10174.9 gi|385805088|ref|YP_005841486.1| - 0.17 10.1 1.9 0.22 9.7 1.9 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone TPR_MLP1_2 PF07926.12 gi|385805088|ref|YP_005841486.1| - 0.18 11.9 9.3 0.09 12.8 4.7 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4472 PF14739.6 gi|385805088|ref|YP_005841486.1| - 0.18 12.5 2.7 0.51 11.1 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) Lebercilin PF15619.6 gi|385805088|ref|YP_005841486.1| - 0.21 11.3 4.7 0.21 11.2 1.6 2.0 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DHR10 PF18595.1 gi|385805088|ref|YP_005841486.1| - 0.21 11.6 0.8 0.93 9.6 0.2 1.9 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain DivIC PF04977.15 gi|385805088|ref|YP_005841486.1| - 0.22 11.3 2.8 17 5.3 0.6 2.8 2 1 0 2 2 2 0 Septum formation initiator TMF_TATA_bd PF12325.8 gi|385805088|ref|YP_005841486.1| - 0.23 11.7 6.1 0.19 12.0 2.8 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding SHE3 PF17078.5 gi|385805088|ref|YP_005841486.1| - 0.24 11.1 14.4 0.42 10.3 14.4 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Muted PF14942.6 gi|385805088|ref|YP_005841486.1| - 0.27 11.6 4.8 0.36 11.2 2.4 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Mod_r PF07200.13 gi|385805088|ref|YP_005841486.1| - 0.27 11.3 12.9 1.1 9.4 12.0 2.2 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF4744 PF15918.5 gi|385805088|ref|YP_005841486.1| - 0.28 12.1 6.1 0.69 10.8 6.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4744) CENP-F_leu_zip PF10473.9 gi|385805088|ref|YP_005841486.1| - 0.29 11.2 4.2 0.6 10.1 1.8 2.1 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.11 gi|385805088|ref|YP_005841486.1| - 0.29 9.0 8.8 0.26 9.2 4.7 1.5 1 1 1 2 2 2 0 Prominin ADIP PF11559.8 gi|385805088|ref|YP_005841486.1| - 0.34 11.0 8.7 0.41 10.7 1.2 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Exonuc_VII_L PF02601.15 gi|385805088|ref|YP_005841486.1| - 0.37 10.3 5.3 0.57 9.7 5.3 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Gp-FAR-1 PF05823.12 gi|385805088|ref|YP_005841486.1| - 0.38 11.1 2.3 1.1 9.6 0.3 2.2 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Rab5-bind PF09311.11 gi|385805088|ref|YP_005841486.1| - 0.39 10.1 6.1 0.76 9.1 2.3 1.9 1 1 1 2 2 2 0 Rabaptin-like protein DUF948 PF06103.11 gi|385805088|ref|YP_005841486.1| - 0.39 11.0 1.7 4.3 7.7 0.9 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) KxDL PF10241.9 gi|385805088|ref|YP_005841486.1| - 0.53 10.6 5.6 1 9.7 2.5 2.6 1 1 2 3 3 3 0 Uncharacterized conserved protein DUF3450 PF11932.8 gi|385805088|ref|YP_005841486.1| - 0.6 9.4 11.2 1.5 8.0 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) YabA PF06156.13 gi|385805088|ref|YP_005841486.1| - 0.64 10.7 5.3 6.8 7.4 1.2 2.7 1 1 1 2 2 2 0 Initiation control protein YabA HAUS-augmin3 PF14932.6 gi|385805088|ref|YP_005841486.1| - 0.85 9.1 13.3 0.34 10.4 7.3 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 HR1 PF02185.16 gi|385805088|ref|YP_005841486.1| - 0.86 9.8 7.1 6.1 7.0 1.5 2.7 1 1 1 2 2 2 0 Hr1 repeat CdvA PF18822.1 gi|385805088|ref|YP_005841486.1| - 0.92 9.3 4.3 3.5 7.5 4.1 2.1 1 1 0 1 1 1 0 CdvA-like coiled-coil domain bZIP_1 PF00170.21 gi|385805088|ref|YP_005841486.1| - 1.2 9.3 9.6 5.6 7.1 0.3 3.3 1 1 2 3 3 3 0 bZIP transcription factor TMF_DNA_bd PF12329.8 gi|385805088|ref|YP_005841486.1| - 1.4 9.0 8.3 2.6 8.1 0.7 3.0 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding CorA PF01544.18 gi|385805088|ref|YP_005841486.1| - 1.5 8.1 11.8 0.066 12.5 3.8 2.4 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein CLZ PF16526.5 gi|385805088|ref|YP_005841486.1| - 2.2 8.7 7.2 9.5 6.7 0.8 3.4 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HALZ PF02183.18 gi|385805088|ref|YP_005841486.1| - 2.4 8.5 9.0 0.15 12.3 1.4 2.8 3 1 1 4 4 3 0 Homeobox associated leucine zipper DASH_Duo1 PF08651.10 gi|385805088|ref|YP_005841486.1| - 2.4 8.0 11.3 0.42 10.4 1.4 3.1 1 1 2 3 3 3 0 DASH complex subunit Duo1 DUF4795 PF16043.5 gi|385805088|ref|YP_005841486.1| - 3.2 7.3 5.1 61 3.1 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Fib_alpha PF08702.10 gi|385805088|ref|YP_005841486.1| - 3.8 7.7 12.0 6.5 6.9 5.5 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Cortex-I_coil PF09304.10 gi|385805088|ref|YP_005841486.1| - 4.2 7.6 6.1 2 8.6 0.7 2.2 1 1 0 2 2 2 0 Cortexillin I, coiled coil AATF-Che1 PF13339.6 gi|385805088|ref|YP_005841486.1| - 4.5 7.9 11.6 6e+02 1.1 11.7 2.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF4392 PF14336.6 gi|385805089|ref|YP_005841487.1| - 1.2e-81 274.4 0.0 1.4e-81 274.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4392) ParBc PF02195.18 gi|385805090|ref|YP_005841488.1| - 1.8e-10 41.0 0.4 4.7e-10 39.6 0.4 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain PLDc PF00614.22 gi|385805090|ref|YP_005841488.1| - 0.038 14.2 0.1 0.081 13.1 0.1 1.6 1 1 0 1 1 1 0 Phospholipase D Active site motif ParBc_2 PF08857.11 gi|385805090|ref|YP_005841488.1| - 0.052 13.6 0.1 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 Putative ParB-like nuclease Diphthami_syn_2 PF01902.17 gi|385805091|ref|YP_005841489.1| - 1.5e-22 80.2 0.0 2.7e-22 79.4 0.0 1.4 1 1 0 1 1 1 1 Diphthamide synthase Asn_synthase PF00733.21 gi|385805092|ref|YP_005841490.1| - 1.9e-20 73.8 0.0 7.4e-12 45.6 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase QueC PF06508.13 gi|385805092|ref|YP_005841490.1| - 0.032 13.7 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Baculo_ME53 PF06061.11 gi|385805093|ref|YP_005841491.1| - 0.019 14.2 0.1 0.019 14.2 0.1 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 Spindle_Spc25 PF08234.12 gi|385805093|ref|YP_005841491.1| - 0.028 14.6 0.3 0.038 14.2 0.3 1.3 1 0 0 1 1 1 0 Chromosome segregation protein Spc25 Lig_chan-Glu_bd PF10613.9 gi|385805093|ref|YP_005841491.1| - 0.1 12.8 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site DGC PF08859.11 gi|385805094|ref|YP_005841492.1| - 2e-28 98.6 1.1 2.5e-28 98.3 1.1 1.1 1 0 0 1 1 1 1 DGC domain BAAT_C PF08840.11 gi|385805094|ref|YP_005841492.1| - 0.0033 17.4 0.0 0.0081 16.1 0.0 1.6 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal OrfB_Zn_ribbon PF07282.11 gi|385805095|ref|YP_005841493.1| - 1.6e-18 66.3 0.0 2.4e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CEP63 PF17045.5 gi|385805096|ref|YP_005841494.1| - 0.049 13.5 0.2 0.057 13.3 0.2 1.1 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa HTH_29 PF13551.6 gi|385805097|ref|YP_005841495.1| - 0.00094 19.2 0.5 0.0089 16.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|385805097|ref|YP_005841495.1| - 0.0016 18.1 0.4 0.06 13.2 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|385805097|ref|YP_005841495.1| - 0.024 14.1 0.1 0.043 13.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|385805097|ref|YP_005841495.1| - 0.028 14.5 0.0 0.068 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_16 PF17920.1 gi|385805097|ref|YP_005841495.1| - 0.055 13.7 0.3 0.088 13.0 0.3 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain AbiEi_4 PF13338.6 gi|385805097|ref|YP_005841495.1| - 0.073 13.2 1.0 0.39 10.9 0.1 2.3 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TF_Zn_Ribbon PF08271.12 gi|385805097|ref|YP_005841495.1| - 0.078 12.5 1.6 0.13 11.7 1.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding NRDD PF13597.6 gi|385805101|ref|YP_005841499.1| - 4.2e-147 491.3 0.0 5.1e-147 491.0 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase TackOD1 PF18551.1 gi|385805101|ref|YP_005841499.1| - 0.0054 16.4 0.0 0.0094 15.6 0.0 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|385805101|ref|YP_005841499.1| - 0.042 13.9 1.1 0.051 13.6 0.1 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|385805101|ref|YP_005841499.1| - 3.4 7.5 5.5 3.2 7.6 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.21 gi|385805102|ref|YP_005841500.1| - 2e-13 51.1 0.0 6.6e-13 49.4 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|385805102|ref|YP_005841500.1| - 3.8e-10 39.9 0.0 6.9e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|385805102|ref|YP_005841500.1| - 2.9e-09 37.3 0.0 5.2e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain CbiZ PF01955.18 gi|385805103|ref|YP_005841501.1| - 4.7e-31 108.4 0.0 5.3e-31 108.2 0.0 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CRISPR_Cas6 PF10040.9 gi|385805104|ref|YP_005841502.1| - 3.1e-05 24.5 0.0 6.1e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 CRISPR_Cas6 PF10040.9 gi|385805105|ref|YP_005841503.1| - 3.7e-15 56.3 0.0 8.1e-15 55.2 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|385805105|ref|YP_005841503.1| - 5.8e-05 23.3 0.0 9.8e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Cas6 N-terminal domain Cas_Cmr3 PF09700.10 gi|385805105|ref|YP_005841503.1| - 0.17 11.2 0.0 1.1 8.6 0.1 1.8 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cmr3) MarR_2 PF12802.7 gi|385805106|ref|YP_005841504.1| - 3.8e-07 29.9 0.2 7e-07 29.0 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|385805106|ref|YP_005841504.1| - 1.1e-06 28.3 0.1 2.2e-06 27.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|385805106|ref|YP_005841504.1| - 1.9e-06 27.6 0.3 4.4e-06 26.4 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|385805106|ref|YP_005841504.1| - 4.9e-06 26.0 1.6 5.8e-06 25.8 0.4 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|385805106|ref|YP_005841504.1| - 9.6e-06 25.4 0.0 2e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385805106|ref|YP_005841504.1| - 2.9e-05 24.0 0.1 6.5e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|385805106|ref|YP_005841504.1| - 0.00011 22.1 0.0 0.0002 21.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.22 gi|385805106|ref|YP_005841504.1| - 0.00022 21.1 0.1 0.00042 20.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|385805106|ref|YP_005841504.1| - 0.00034 20.5 0.1 0.00069 19.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Dimerisation2 PF16864.5 gi|385805106|ref|YP_005841504.1| - 0.00066 19.6 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain HTH_27 PF13463.6 gi|385805106|ref|YP_005841504.1| - 0.0016 18.9 0.2 0.0041 17.6 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain Cas_DxTHG PF09455.10 gi|385805106|ref|YP_005841504.1| - 0.0025 17.4 1.1 0.0032 17.1 1.1 1.2 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DUF4364 PF14277.6 gi|385805106|ref|YP_005841504.1| - 0.008 15.9 0.1 0.076 12.8 0.0 2.3 3 0 0 3 3 2 1 Domain of unknown function (DUF4364) PaaX PF07848.12 gi|385805106|ref|YP_005841504.1| - 0.0085 16.3 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 PaaX-like protein HTH_Crp_2 PF13545.6 gi|385805106|ref|YP_005841504.1| - 0.011 15.7 0.1 0.032 14.2 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|385805106|ref|YP_005841504.1| - 0.019 14.7 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|385805106|ref|YP_005841504.1| - 0.02 14.8 1.5 0.028 14.4 0.2 1.9 2 0 0 2 2 2 0 HTH domain Cas_Cas02710 PF09670.10 gi|385805106|ref|YP_005841504.1| - 0.031 13.1 0.0 0.048 12.5 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) Fe_dep_repress PF01325.19 gi|385805106|ref|YP_005841504.1| - 0.036 14.2 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaRep2b PF07775.11 gi|385805106|ref|YP_005841504.1| - 0.051 12.1 0.1 0.063 11.8 0.1 1.1 1 0 0 1 1 1 0 PaRep2b protein HTH_38 PF13936.6 gi|385805106|ref|YP_005841504.1| - 0.072 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|385805106|ref|YP_005841504.1| - 0.072 12.9 0.1 2.8 7.8 0.1 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|385805106|ref|YP_005841504.1| - 0.086 13.2 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|385805106|ref|YP_005841504.1| - 0.15 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor WW PF00397.26 gi|385805107|ref|YP_005841505.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 WW domain DUF2666 PF10869.8 gi|385805107|ref|YP_005841505.1| - 0.26 11.5 2.9 2.3 8.4 0.1 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF2666) Helicase_C PF00271.31 gi|385805108|ref|YP_005841506.1| - 6.2e-10 39.4 0.0 1.7e-09 38.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385805108|ref|YP_005841506.1| - 5.9e-08 32.9 0.0 5.5e-07 29.8 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|385805108|ref|YP_005841506.1| - 3.2e-07 30.3 0.0 7.7e-06 25.8 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase Cas_Csx9 PF09658.10 gi|385805109|ref|YP_005841507.1| - 0.0012 18.1 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csx9) DevR PF01905.16 gi|385805111|ref|YP_005841509.1| - 6.2e-65 218.9 2.2 1e-64 218.2 2.2 1.4 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 E7 PF00527.18 gi|385805111|ref|YP_005841509.1| - 0.14 12.4 1.1 0.3 11.3 1.1 1.5 1 0 0 1 1 1 0 E7 protein, Early protein RHH_4 PF13467.6 gi|385805112|ref|YP_005841510.1| - 0.15 12.0 1.8 6.7 6.7 0.3 2.8 1 1 2 3 3 3 0 Ribbon-helix-helix domain Csa1 PF06023.12 gi|385805114|ref|YP_005841512.1| - 1.4e-58 198.6 0.0 1.8e-58 198.2 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|385805114|ref|YP_005841512.1| - 3e-05 24.1 0.0 4.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 gi|385805115|ref|YP_005841513.1| - 1e-55 188.9 0.0 1.4e-55 188.5 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 RF-1 PF00472.20 gi|385805115|ref|YP_005841513.1| - 3.5 7.6 5.6 9.8 6.1 5.6 1.8 1 1 0 1 1 1 0 RF-1 domain CRISPR_Cas2 PF09827.9 gi|385805116|ref|YP_005841514.1| - 3.6e-16 59.1 0.3 4e-16 58.9 0.3 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.17 gi|385805117|ref|YP_005841515.1| - 9.4e-09 35.6 0.0 5.2e-08 33.2 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|385805117|ref|YP_005841515.1| - 1.7e-06 28.1 0.0 2.2e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily XisH PF08814.10 gi|385805117|ref|YP_005841515.1| - 0.17 12.0 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 XisH protein HTH_36 PF13730.6 gi|385805118|ref|YP_005841516.1| - 4.9e-05 23.2 0.0 7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385805118|ref|YP_005841516.1| - 0.0017 18.3 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|385805118|ref|YP_005841516.1| - 0.002 17.5 0.0 0.0031 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Mrr_N PF14338.6 gi|385805118|ref|YP_005841516.1| - 0.0027 17.8 0.1 0.0047 17.0 0.0 1.6 1 1 1 2 2 2 1 Mrr N-terminal domain Sigma70_r4_2 PF08281.12 gi|385805118|ref|YP_005841516.1| - 0.0054 16.4 0.2 0.052 13.2 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.15 gi|385805118|ref|YP_005841516.1| - 0.006 16.2 0.0 0.006 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TrmB PF01978.19 gi|385805118|ref|YP_005841516.1| - 0.0071 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|385805118|ref|YP_005841516.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|385805118|ref|YP_005841516.1| - 0.013 15.3 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|385805118|ref|YP_005841516.1| - 0.014 15.9 0.0 0.018 15.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|385805118|ref|YP_005841516.1| - 0.015 15.2 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|385805118|ref|YP_005841516.1| - 0.019 14.5 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF4423 PF14394.6 gi|385805118|ref|YP_005841516.1| - 0.022 14.5 0.0 0.022 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|385805118|ref|YP_005841516.1| - 0.022 14.7 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|385805118|ref|YP_005841516.1| - 0.024 14.7 0.1 0.042 13.9 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|385805118|ref|YP_005841516.1| - 0.026 14.4 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.9 gi|385805118|ref|YP_005841516.1| - 0.028 14.5 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|385805118|ref|YP_005841516.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Cas_Cas02710 PF09670.10 gi|385805119|ref|YP_005841517.1| - 0.14 10.9 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) DUF5613 PF18467.1 gi|385805120|ref|YP_005841518.1| - 0.019 15.4 0.2 0.043 14.2 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5613) Cas_APE2256 PF09651.10 gi|385805122|ref|YP_005841520.1| - 1.3e-31 109.3 0.6 2e-31 108.7 0.6 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF1887 PF09002.11 gi|385805122|ref|YP_005841520.1| - 8.2e-05 21.5 0.4 0.001 17.8 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF1887) DUF3502 PF12010.8 gi|385805122|ref|YP_005841520.1| - 0.028 15.0 0.7 2.4 8.8 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3502) Beta_elim_lyase PF01212.21 gi|385805122|ref|YP_005841520.1| - 0.12 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase RAMPs PF03787.15 gi|385805123|ref|YP_005841521.1| - 5.7e-13 49.4 0.0 1.1e-12 48.4 0.0 1.5 1 0 0 1 1 1 1 RAMP superfamily Pox_D5 PF03288.16 gi|385805123|ref|YP_005841521.1| - 0.055 14.0 0.2 13 6.3 0.0 2.4 2 0 0 2 2 2 0 Poxvirus D5 protein-like NADH_u_ox_C PF12853.7 gi|385805123|ref|YP_005841521.1| - 0.077 13.0 0.3 0.34 10.9 0.3 2.0 1 1 0 1 1 1 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit RAMPs PF03787.15 gi|385805124|ref|YP_005841522.1| - 0.00042 20.4 0.5 0.00042 20.4 0.5 2.6 2 2 0 2 2 2 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|385805125|ref|YP_005841523.1| - 2.4e-06 27.8 0.0 1.7e-05 25.1 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.15 gi|385805126|ref|YP_005841524.1| - 1.9e-30 106.5 2.2 2.5e-30 106.1 2.2 1.1 1 0 0 1 1 1 1 RAMP superfamily XPA_C PF05181.12 gi|385805126|ref|YP_005841524.1| - 0.024 14.6 0.5 0.95 9.5 0.0 2.4 2 0 0 2 2 2 0 XPA protein C-terminus Cas_Cmr3 PF09700.10 gi|385805127|ref|YP_005841525.1| - 9e-05 22.1 0.0 0.046 13.2 0.0 2.2 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) DUF3692 PF12469.8 gi|385805128|ref|YP_005841526.1| - 6e-30 103.7 0.1 1.9e-29 102.1 0.1 1.9 1 0 0 1 1 1 1 CRISPR-associated protein Nsp1_C PF05064.13 gi|385805128|ref|YP_005841526.1| - 0.016 15.0 1.1 0.95 9.3 0.0 3.5 3 0 0 3 3 3 0 Nsp1-like C-terminal region Spore_III_AB PF09548.10 gi|385805128|ref|YP_005841526.1| - 4 7.5 12.9 2 8.5 2.1 4.0 2 1 2 4 4 4 0 Stage III sporulation protein AB (spore_III_AB) Cas_DxTHG PF09455.10 gi|385805129|ref|YP_005841527.1| - 5.7e-33 115.0 1.0 6.6e-33 114.8 1.0 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family FixS PF03597.15 gi|385805130|ref|YP_005841528.1| - 0.093 12.5 0.8 0.19 11.5 0.8 1.5 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type DUF4234 PF14018.6 gi|385805131|ref|YP_005841529.1| - 0.00053 20.1 0.3 0.00053 20.1 0.3 3.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) DUF202 PF02656.15 gi|385805131|ref|YP_005841529.1| - 0.082 13.4 0.1 26 5.3 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF2418 PF10332.9 gi|385805131|ref|YP_005841529.1| - 0.15 12.6 0.2 0.15 12.6 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2418) DUF973 PF06157.11 gi|385805131|ref|YP_005841529.1| - 1.2 8.1 8.5 1 8.3 0.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF973) UcrQ PF02939.16 gi|385805131|ref|YP_005841529.1| - 1.4 8.9 5.2 3 7.8 1.5 3.0 3 1 0 3 3 3 0 UcrQ family DUF2207 PF09972.9 gi|385805131|ref|YP_005841529.1| - 4.4 6.0 14.0 0.64 8.7 4.6 3.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) TRIQK PF15168.6 gi|385805131|ref|YP_005841529.1| - 7.8 6.5 6.9 8.8 6.3 0.1 3.2 3 0 0 3 3 3 0 Triple QxxK/R motif-containing protein family L27_1 PF09058.10 gi|385805132|ref|YP_005841530.1| - 2.5 8.1 4.7 15 5.6 0.2 3.7 4 0 0 4 4 4 0 L27_1 T2SSE PF00437.20 gi|385805133|ref|YP_005841531.1| - 7.4e-35 120.3 0.0 1.4e-34 119.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|385805133|ref|YP_005841531.1| - 9.8e-05 22.8 0.0 0.00023 21.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|385805133|ref|YP_005841531.1| - 0.00014 21.5 0.0 0.002 17.7 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|385805133|ref|YP_005841531.1| - 0.00026 20.6 0.0 0.0008 19.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|385805133|ref|YP_005841531.1| - 0.00048 20.4 0.1 0.0022 18.3 0.1 2.1 2 1 0 2 2 2 1 AAA domain cobW PF02492.19 gi|385805133|ref|YP_005841531.1| - 0.0012 18.4 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|385805133|ref|YP_005841531.1| - 0.0037 17.0 0.3 0.01 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|385805133|ref|YP_005841531.1| - 0.0041 17.6 0.0 0.011 16.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|385805133|ref|YP_005841531.1| - 0.006 16.8 0.1 0.023 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|385805133|ref|YP_005841531.1| - 0.0072 16.7 0.1 0.054 13.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|385805133|ref|YP_005841531.1| - 0.013 15.3 0.3 0.036 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|385805133|ref|YP_005841531.1| - 0.021 14.8 0.0 0.068 13.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|385805133|ref|YP_005841531.1| - 0.027 14.8 0.1 0.075 13.4 0.1 1.7 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|385805133|ref|YP_005841531.1| - 0.033 13.5 0.0 0.085 12.2 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family Trans_reg_C PF00486.28 gi|385805133|ref|YP_005841531.1| - 0.036 14.2 0.4 1.4 9.0 0.0 2.9 3 0 0 3 3 2 0 Transcriptional regulatory protein, C terminal Viral_helicase1 PF01443.18 gi|385805133|ref|YP_005841531.1| - 0.039 13.7 0.0 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SRPRB PF09439.10 gi|385805133|ref|YP_005841531.1| - 0.048 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.6 gi|385805133|ref|YP_005841531.1| - 0.05 13.4 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|385805133|ref|YP_005841531.1| - 0.06 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|385805133|ref|YP_005841531.1| - 0.063 12.6 0.0 0.27 10.5 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin ATP_bind_1 PF03029.17 gi|385805133|ref|YP_005841531.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DEAD PF00270.29 gi|385805133|ref|YP_005841531.1| - 0.081 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|385805133|ref|YP_005841531.1| - 0.11 12.4 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|385805133|ref|YP_005841531.1| - 0.14 11.9 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|385805133|ref|YP_005841531.1| - 0.16 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|385805133|ref|YP_005841531.1| - 0.39 11.2 2.3 3 8.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain UvrD-helicase PF00580.21 gi|385805133|ref|YP_005841531.1| - 0.44 10.0 0.0 0.44 10.0 0.0 1.9 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain DUF4307 PF14155.6 gi|385805134|ref|YP_005841532.1| - 0.28 11.0 2.7 0.14 11.9 0.7 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) Gly-zipper_Omp PF13488.6 gi|385805135|ref|YP_005841533.1| - 1.6 8.8 9.4 1.4 8.9 7.6 1.9 2 0 0 2 2 2 0 Glycine zipper XhlA PF10779.9 gi|385805135|ref|YP_005841533.1| - 5.3 7.3 7.2 1.9 8.7 0.1 2.3 2 0 0 2 2 2 0 Haemolysin XhlA adh_short_C2 PF13561.6 gi|385805136|ref|YP_005841534.1| - 8.5e-39 133.5 0.0 1e-38 133.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385805136|ref|YP_005841534.1| - 1.8e-38 132.0 0.1 2.1e-38 131.7 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short PF00106.25 gi|385805137|ref|YP_005841535.1| - 1.1e-13 51.1 0.1 1.2e-13 50.9 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|385805137|ref|YP_005841535.1| - 1.6e-07 31.2 0.1 1.7e-07 31.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|385805137|ref|YP_005841535.1| - 0.00014 21.8 0.1 0.00016 21.6 0.1 1.0 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|385805137|ref|YP_005841535.1| - 0.00094 18.4 0.2 0.001 18.3 0.2 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 2-Hacid_dh_C PF02826.19 gi|385805137|ref|YP_005841535.1| - 0.0032 16.8 0.1 0.0032 16.8 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|385805137|ref|YP_005841535.1| - 0.0032 17.0 0.0 0.0034 16.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_Gly3P_dh_N PF01210.23 gi|385805137|ref|YP_005841535.1| - 0.014 15.3 0.0 0.016 15.2 0.0 1.0 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NOG1 PF06858.14 gi|385805137|ref|YP_005841535.1| - 0.015 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) Methyltransf_25 PF13649.6 gi|385805137|ref|YP_005841535.1| - 0.024 15.4 0.0 0.026 15.2 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|385805137|ref|YP_005841535.1| - 0.032 14.5 0.0 0.036 14.3 0.0 1.1 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|385805137|ref|YP_005841535.1| - 0.084 12.8 0.2 0.096 12.6 0.2 1.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.19 gi|385805137|ref|YP_005841535.1| - 0.091 11.7 0.2 0.094 11.7 0.2 1.0 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|385805137|ref|YP_005841535.1| - 0.13 11.7 0.1 0.13 11.6 0.1 1.0 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase KdpA PF03814.15 gi|385805140|ref|YP_005841538.1| - 1.9e-146 488.5 34.2 2.5e-146 488.1 34.2 1.1 1 0 0 1 1 1 1 Potassium-transporting ATPase A subunit E1-E2_ATPase PF00122.20 gi|385805141|ref|YP_005841539.1| - 5.3e-37 127.1 1.4 5.3e-37 127.1 1.4 2.7 3 0 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|385805141|ref|YP_005841539.1| - 1.3e-28 100.7 0.4 2.3e-28 99.9 0.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|385805141|ref|YP_005841539.1| - 2.1e-07 31.0 1.2 1.9e-05 24.6 0.3 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Aminotran_4 PF01063.19 gi|385805141|ref|YP_005841539.1| - 0.017 15.0 0.0 0.2 11.5 0.0 2.2 2 0 0 2 2 2 0 Amino-transferase class IV KdpC PF02669.15 gi|385805142|ref|YP_005841540.1| - 1.5e-20 73.8 0.1 5.7e-10 39.3 0.0 2.0 1 1 1 2 2 2 2 K+-transporting ATPase, c chain ASFV_360 PF01671.16 gi|385805142|ref|YP_005841540.1| - 0.021 14.3 0.5 0.029 13.8 0.5 1.2 1 0 0 1 1 1 0 African swine fever virus multigene family 360 protein LptF_LptG PF03739.14 gi|385805146|ref|YP_005841544.1| - 0.0069 15.3 0.2 0.0079 15.1 0.2 1.2 1 0 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG BPD_transp_1 PF00528.22 gi|385805146|ref|YP_005841544.1| - 0.014 15.1 1.2 0.025 14.3 1.2 1.4 1 1 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component MFS_1 PF07690.16 gi|385805147|ref|YP_005841545.1| - 0.00017 20.7 15.7 0.00021 20.3 15.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|385805147|ref|YP_005841545.1| - 0.086 11.2 4.5 0.1 10.9 4.5 1.1 1 0 0 1 1 1 0 Transmembrane secretion effector Nicastrin PF05450.15 gi|385805147|ref|YP_005841545.1| - 0.11 11.9 0.9 0.15 11.5 0.9 1.1 1 0 0 1 1 1 0 Nicastrin AAA_10 PF12846.7 gi|385805148|ref|YP_005841546.1| - 8.1e-14 51.3 0.1 5.2e-07 28.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|385805148|ref|YP_005841546.1| - 4.1e-10 40.1 0.0 7.4e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|385805148|ref|YP_005841546.1| - 0.00036 19.6 0.0 0.072 12.0 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|385805148|ref|YP_005841546.1| - 0.00087 19.6 0.0 0.028 14.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|385805148|ref|YP_005841546.1| - 0.0028 17.1 0.0 0.0059 16.0 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family T2SSE PF00437.20 gi|385805148|ref|YP_005841546.1| - 0.0098 15.0 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein MeaB PF03308.16 gi|385805148|ref|YP_005841546.1| - 0.011 14.7 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_7 PF12775.7 gi|385805148|ref|YP_005841546.1| - 0.018 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|385805148|ref|YP_005841546.1| - 0.056 14.0 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Fer4_NifH PF00142.18 gi|385805148|ref|YP_005841546.1| - 0.097 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Thymidylate_kin PF02223.17 gi|385805148|ref|YP_005841546.1| - 0.11 12.2 0.5 0.37 10.4 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_16 PF13191.6 gi|385805148|ref|YP_005841546.1| - 0.11 12.9 0.0 0.52 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain SpoIIIAC PF06686.11 gi|385805149|ref|YP_005841547.1| - 0.012 15.8 3.4 0.016 15.4 2.8 1.4 1 1 0 1 1 1 0 Stage III sporulation protein AC/AD protein family TrwB_AAD_bind PF10412.9 gi|385805152|ref|YP_005841550.1| - 2.4e-15 56.4 0.3 1.6e-14 53.7 0.3 1.9 1 1 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|385805152|ref|YP_005841550.1| - 1.8e-13 51.1 0.1 2.7e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TraG-D_C PF12696.7 gi|385805152|ref|YP_005841550.1| - 5.5e-09 36.1 0.0 1.1e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|385805152|ref|YP_005841550.1| - 1.6e-07 30.6 0.0 4.9e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.6 gi|385805152|ref|YP_005841550.1| - 3.3e-07 30.7 0.1 0.0037 17.5 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_10 PF12846.7 gi|385805152|ref|YP_005841550.1| - 5.9e-05 22.2 0.0 0.00012 21.1 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_30 PF13604.6 gi|385805152|ref|YP_005841550.1| - 0.00043 20.1 0.0 0.018 14.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF853 PF05872.12 gi|385805152|ref|YP_005841550.1| - 0.00066 18.4 0.0 0.0026 16.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) ATPase_2 PF01637.18 gi|385805152|ref|YP_005841550.1| - 0.001 19.0 0.0 0.16 11.9 0.0 2.2 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|385805152|ref|YP_005841550.1| - 0.0046 17.3 0.5 0.038 14.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385805152|ref|YP_005841550.1| - 0.0048 17.3 0.6 0.98 9.8 0.6 2.8 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|385805152|ref|YP_005841550.1| - 0.0061 15.7 0.0 0.016 14.3 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|385805152|ref|YP_005841550.1| - 0.0085 16.6 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter Pox_A32 PF04665.12 gi|385805152|ref|YP_005841550.1| - 0.027 14.0 0.1 0.065 12.7 0.0 1.6 2 0 0 2 2 2 0 Poxvirus A32 protein FtsK_SpoIIIE PF01580.18 gi|385805152|ref|YP_005841550.1| - 0.032 13.6 0.0 0.32 10.3 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP_bind_1 PF03029.17 gi|385805152|ref|YP_005841550.1| - 0.042 13.6 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|385805152|ref|YP_005841550.1| - 0.045 13.6 0.0 0.36 10.7 0.0 2.4 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|385805152|ref|YP_005841550.1| - 0.063 13.7 0.0 1.5 9.2 0.0 2.7 2 1 0 2 2 2 0 RNA helicase NACHT PF05729.12 gi|385805152|ref|YP_005841550.1| - 0.069 13.1 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|385805152|ref|YP_005841550.1| - 0.087 12.1 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|385805152|ref|YP_005841550.1| - 0.13 11.4 0.1 1.2 8.2 0.0 2.1 2 1 0 2 2 2 0 G-protein alpha subunit AAA_29 PF13555.6 gi|385805152|ref|YP_005841550.1| - 0.15 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385805152|ref|YP_005841550.1| - 0.16 11.8 0.0 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase Rick_17kDa_Anti PF05433.15 gi|385805153|ref|YP_005841551.1| - 0.00071 19.4 1.4 0.0012 18.6 1.4 1.4 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 gi|385805153|ref|YP_005841551.1| - 0.0022 17.9 0.4 0.0038 17.2 0.4 1.3 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|385805153|ref|YP_005841551.1| - 0.0044 16.7 0.3 0.0069 16.1 0.3 1.2 1 0 0 1 1 1 1 YMGG-like Gly-zipper DUF3792 PF12670.7 gi|385805153|ref|YP_005841551.1| - 0.019 15.1 0.3 0.029 14.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) DUF1269 PF06897.12 gi|385805153|ref|YP_005841551.1| - 5.5 7.3 5.3 5.7 7.3 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Cons_hypoth95 PF03602.15 gi|385805154|ref|YP_005841552.1| - 0.003 17.2 0.0 0.0031 17.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|385805154|ref|YP_005841552.1| - 0.0067 16.1 0.0 0.0067 16.1 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Met_10 PF02475.16 gi|385805154|ref|YP_005841552.1| - 0.16 11.7 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein DEAD_assoc PF08494.11 gi|385805155|ref|YP_005841553.1| - 5.6e-53 179.6 0.1 1.1e-52 178.7 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|385805155|ref|YP_005841553.1| - 1e-29 103.5 0.0 3.7e-29 101.7 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385805155|ref|YP_005841553.1| - 1.5e-17 63.9 0.1 2.6e-15 56.7 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385805155|ref|YP_005841553.1| - 3.3e-09 37.0 0.0 2e-08 34.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_11 PF13086.6 gi|385805155|ref|YP_005841553.1| - 0.03 14.1 0.0 0.21 11.3 0.0 2.3 1 1 1 2 2 2 0 AAA domain DUF4130 PF13566.6 gi|385805155|ref|YP_005841553.1| - 0.031 14.3 0.0 0.088 12.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4130 PhoH PF02562.16 gi|385805155|ref|YP_005841553.1| - 0.038 13.4 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.29 gi|385805155|ref|YP_005841553.1| - 0.073 13.5 1.7 3.9 7.9 1.7 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|385805155|ref|YP_005841553.1| - 0.095 13.0 0.0 0.82 10.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain SNF2_N PF00176.23 gi|385805155|ref|YP_005841553.1| - 0.15 10.7 0.0 0.39 9.4 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain CBS PF00571.28 gi|385805156|ref|YP_005841554.1| - 5e-36 122.9 3.7 2.6e-18 66.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|385805156|ref|YP_005841554.1| - 0.0015 18.8 0.1 0.25 11.6 0.0 2.4 2 0 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain NETI PF14044.6 gi|385805156|ref|YP_005841554.1| - 0.1 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 NETI protein Pyr_redox_2 PF07992.14 gi|385805157|ref|YP_005841555.1| - 2.8e-22 79.3 0.3 1.4e-21 77.0 0.3 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|385805157|ref|YP_005841555.1| - 1.6e-07 31.5 0.6 1.1e-06 28.8 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|385805157|ref|YP_005841555.1| - 1.4e-05 25.6 0.1 0.037 14.6 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385805157|ref|YP_005841555.1| - 3.3e-05 23.3 0.3 0.38 10.0 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|385805157|ref|YP_005841555.1| - 0.0023 17.2 0.1 0.029 13.6 0.1 2.3 3 0 0 3 3 3 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|385805157|ref|YP_005841555.1| - 0.0042 16.4 0.1 0.11 11.8 0.0 2.2 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|385805157|ref|YP_005841555.1| - 0.005 16.1 0.1 0.0087 15.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain MCRA PF06100.11 gi|385805157|ref|YP_005841555.1| - 0.017 14.0 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 MCRA family HI0933_like PF03486.14 gi|385805157|ref|YP_005841555.1| - 0.018 13.8 0.1 0.03 13.0 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein 2-Hacid_dh_C PF02826.19 gi|385805157|ref|YP_005841555.1| - 0.03 13.7 0.1 8.6 5.7 0.0 2.6 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|385805157|ref|YP_005841555.1| - 0.036 13.1 0.2 0.85 8.6 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain GIDA PF01134.22 gi|385805157|ref|YP_005841555.1| - 0.045 12.8 2.1 1.3 8.0 0.5 2.8 2 2 1 3 3 3 0 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|385805157|ref|YP_005841555.1| - 0.08 12.8 0.2 0.54 10.1 0.0 2.2 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Emaravirus_P4 PF16505.5 gi|385805157|ref|YP_005841555.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 P4 movement protein of Emaravirus, and the 30K superfamily FAD_oxidored PF12831.7 gi|385805157|ref|YP_005841555.1| - 0.18 11.1 0.1 0.26 10.6 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase DAO PF01266.24 gi|385805157|ref|YP_005841555.1| - 0.27 10.7 1.0 0.53 9.8 1.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|385805157|ref|YP_005841555.1| - 0.43 10.5 2.2 0.38 10.7 0.2 1.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding DUF123 PF01986.16 gi|385805159|ref|YP_005841557.1| - 2.8e-23 82.2 0.0 3.6e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF3189 PF11385.8 gi|385805159|ref|YP_005841557.1| - 0.084 12.7 0.1 0.95 9.3 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3189) HAD_2 PF13419.6 gi|385805160|ref|YP_005841558.1| - 5.2e-14 52.7 0.1 6.3e-14 52.4 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385805160|ref|YP_005841558.1| - 1.6e-07 31.9 0.0 1.5e-06 28.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|385805160|ref|YP_005841558.1| - 4.2e-05 23.4 0.2 0.24 11.1 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385805160|ref|YP_005841558.1| - 0.00026 21.5 0.1 0.0039 17.6 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385805160|ref|YP_005841558.1| - 0.0009 19.3 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.7 gi|385805160|ref|YP_005841558.1| - 0.11 12.3 0.0 0.51 10.2 0.0 1.9 2 0 0 2 2 2 0 Acid Phosphatase Hydrolase_6 PF13344.6 gi|385805160|ref|YP_005841558.1| - 0.13 12.4 0.0 24 5.1 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|385805160|ref|YP_005841558.1| - 0.2 11.1 0.0 0.4 10.2 0.0 1.5 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DNA_primase_lrg PF04104.14 gi|385805161|ref|YP_005841559.1| - 2.1e-30 106.0 0.0 3.3e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PfkB PF00294.24 gi|385805162|ref|YP_005841560.1| - 2.5e-33 115.7 0.0 4e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF1331 PF07048.11 gi|385805162|ref|YP_005841560.1| - 0.031 14.0 0.0 0.069 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1331) PNP_UDP_1 PF01048.20 gi|385805163|ref|YP_005841561.1| - 4.3e-41 140.7 0.0 5.1e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF4465 PF14717.6 gi|385805163|ref|YP_005841561.1| - 0.087 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4465) HAD_2 PF13419.6 gi|385805165|ref|YP_005841563.1| - 1.3e-15 58.0 0.2 1.5e-15 57.7 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385805165|ref|YP_005841563.1| - 4.4e-06 27.2 0.0 7.2e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385805165|ref|YP_005841563.1| - 6.2e-05 23.4 0.0 0.0001 22.7 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385805165|ref|YP_005841563.1| - 7.8e-05 22.7 0.0 0.00028 20.9 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like dNK PF01712.19 gi|385805166|ref|YP_005841564.1| - 0.013 15.4 0.0 0.015 15.2 0.0 1.0 1 0 0 1 1 1 0 Deoxynucleoside kinase MCM_N PF14551.6 gi|385805168|ref|YP_005841566.1| - 0.16 12.6 1.4 9.6 6.9 0.4 2.4 1 1 1 2 2 2 0 MCM N-terminal domain STT3 PF02516.14 gi|385805169|ref|YP_005841567.1| - 1.1e-32 113.7 43.8 1.7e-32 113.0 43.8 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.6 gi|385805169|ref|YP_005841567.1| - 4.4e-05 23.8 13.0 4.4e-05 23.8 13.0 4.1 4 1 1 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ODV-E18 PF10717.9 gi|385805169|ref|YP_005841567.1| - 5.8 6.9 6.4 19 5.2 0.1 3.2 3 0 0 3 3 3 0 Occlusion-derived virus envelope protein ODV-E18 NAD_kinase PF01513.21 gi|385805170|ref|YP_005841568.1| - 3.9e-21 75.5 0.0 7.5e-21 74.6 0.0 1.5 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|385805170|ref|YP_005841568.1| - 0.0032 17.1 0.0 0.0059 16.2 0.0 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PIN_6 PF17146.4 gi|385805171|ref|YP_005841569.1| - 1.5e-06 28.6 0.1 4.5e-06 27.1 0.1 1.7 1 1 0 1 1 1 1 PIN domain of ribonuclease CTV_P23 PF04808.12 gi|385805171|ref|YP_005841569.1| - 0.011 15.3 0.3 0.013 15.0 0.3 1.1 1 0 0 1 1 1 0 Citrus tristeza virus (CTV) P23 protein Pox_A28 PF04584.14 gi|385805171|ref|YP_005841569.1| - 0.08 13.1 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A28 family MbeB_N PF04837.12 gi|385805171|ref|YP_005841569.1| - 0.11 12.8 1.6 0.32 11.3 1.6 1.7 1 1 0 1 1 1 0 MbeB-like, N-term conserved region tRNA_anti-codon PF01336.25 gi|385805173|ref|YP_005841571.1| - 1.4e-08 34.6 0.7 2.1e-08 34.0 0.7 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|385805173|ref|YP_005841571.1| - 3.5e-05 23.6 1.5 4.7e-05 23.2 1.5 1.2 1 0 0 1 1 1 1 Replication protein A OB domain PqqD PF05402.12 gi|385805174|ref|YP_005841572.1| - 6.2e-08 32.8 0.2 7.1e-08 32.6 0.2 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Jag_N PF14804.6 gi|385805174|ref|YP_005841572.1| - 0.021 15.2 1.0 0.027 14.8 0.1 1.6 2 0 0 2 2 2 0 Jag N-terminus DUF3283 PF11686.8 gi|385805174|ref|YP_005841572.1| - 0.082 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3283) LRAT PF04970.13 gi|385805175|ref|YP_005841573.1| - 0.039 14.3 0.2 0.059 13.7 0.2 1.3 1 0 0 1 1 1 0 Lecithin retinol acyltransferase HhH-GPD PF00730.25 gi|385805176|ref|YP_005841574.1| - 9.7e-16 58.2 0.0 1.3e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|385805176|ref|YP_005841574.1| - 0.00038 20.2 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385805176|ref|YP_005841574.1| - 0.0004 20.9 0.5 0.0013 19.3 0.5 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|385805176|ref|YP_005841574.1| - 0.02 15.2 0.0 0.089 13.2 0.0 2.2 1 0 0 1 1 1 0 IMS family HHH motif EndIII_4Fe-2S PF10576.9 gi|385805176|ref|YP_005841574.1| - 0.036 14.4 6.0 0.069 13.5 6.0 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHH_8 PF14716.6 gi|385805176|ref|YP_005841574.1| - 0.083 13.3 0.0 0.27 11.6 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain Sigma70_r4 PF04545.16 gi|385805177|ref|YP_005841575.1| - 0.012 15.1 0.1 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|385805177|ref|YP_005841575.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Snf7 PF03357.21 gi|385805178|ref|YP_005841576.1| - 0.00044 19.9 0.7 0.00075 19.1 0.7 1.5 1 1 0 1 1 1 1 Snf7 Enolase_C PF00113.22 gi|385805179|ref|YP_005841577.1| - 1.2e-100 336.6 0.0 1.4e-100 336.3 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|385805179|ref|YP_005841577.1| - 6.2e-45 152.6 0.1 9.3e-45 152.0 0.1 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|385805179|ref|YP_005841577.1| - 2.9e-07 30.3 0.0 4.1e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like DZR PF12773.7 gi|385805180|ref|YP_005841578.1| - 2.6e-05 24.1 0.1 3.7e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|385805180|ref|YP_005841578.1| - 3.9e-05 23.6 6.1 0.015 15.4 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.6 gi|385805180|ref|YP_005841578.1| - 0.00078 19.1 0.4 0.027 14.2 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385805180|ref|YP_005841578.1| - 0.0017 18.0 6.7 0.1 12.3 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain FYDLN_acid PF09538.10 gi|385805180|ref|YP_005841578.1| - 0.0022 18.6 1.6 1.3 9.8 0.3 2.2 2 0 0 2 2 2 2 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.10 gi|385805180|ref|YP_005841578.1| - 0.0038 17.3 1.6 1.2 9.3 0.3 2.3 2 0 0 2 2 2 1 Zinc ribbon domain CpXC PF14353.6 gi|385805180|ref|YP_005841578.1| - 0.0038 17.3 0.0 0.0067 16.5 0.0 1.3 1 0 0 1 1 1 1 CpXC protein zf_UBZ PF18439.1 gi|385805180|ref|YP_005841578.1| - 0.0053 16.3 1.4 0.31 10.7 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DUF4379 PF14311.6 gi|385805180|ref|YP_005841578.1| - 0.0061 16.9 1.2 0.035 14.5 0.0 2.2 2 0 0 2 2 2 1 Probable Zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385805180|ref|YP_005841578.1| - 0.0062 16.5 3.2 0.077 13.0 3.9 2.0 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-IS66 PF13005.7 gi|385805180|ref|YP_005841578.1| - 0.0092 16.4 0.5 0.031 14.7 0.5 1.9 1 1 0 1 1 1 1 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|385805180|ref|YP_005841578.1| - 0.012 14.9 0.3 2.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.6 gi|385805180|ref|YP_005841578.1| - 0.016 15.1 1.0 1.2 9.1 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|385805180|ref|YP_005841578.1| - 0.021 14.4 3.8 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|385805180|ref|YP_005841578.1| - 0.024 14.6 0.2 2 8.4 0.0 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ISL3 PF14690.6 gi|385805180|ref|YP_005841578.1| - 0.038 14.6 0.3 5.5 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-3CxxC_2 PF17180.4 gi|385805180|ref|YP_005841578.1| - 0.044 14.5 1.3 0.1 13.3 0.1 2.0 2 0 0 2 2 2 0 Zinc-binding domain zf-ribbon_3 PF13248.6 gi|385805180|ref|YP_005841578.1| - 0.045 13.2 7.0 1.8 8.1 1.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385805180|ref|YP_005841578.1| - 0.065 12.8 5.3 3.5 7.2 1.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|385805180|ref|YP_005841578.1| - 0.066 13.0 1.0 6.2 6.7 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|385805180|ref|YP_005841578.1| - 0.083 13.2 0.6 11 6.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon zf-HIT PF04438.16 gi|385805180|ref|YP_005841578.1| - 0.1 12.5 5.2 0.51 10.3 0.6 2.2 2 0 0 2 2 2 0 HIT zinc finger HypA PF01155.19 gi|385805180|ref|YP_005841578.1| - 0.11 12.5 0.1 0.25 11.4 0.1 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|385805180|ref|YP_005841578.1| - 0.14 12.1 3.8 0.88 9.5 0.2 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS PhnA_Zn_Ribbon PF08274.12 gi|385805180|ref|YP_005841578.1| - 0.14 12.1 1.6 7.1 6.7 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-NADH-PPase PF09297.11 gi|385805180|ref|YP_005841578.1| - 0.14 11.8 2.9 2.3 7.9 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.9 gi|385805180|ref|YP_005841578.1| - 0.14 11.6 2.3 3.9 7.0 0.5 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com TFIIS_C PF01096.18 gi|385805180|ref|YP_005841578.1| - 0.14 12.0 3.7 0.46 10.4 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.6 gi|385805180|ref|YP_005841578.1| - 0.22 11.7 3.5 2.8 8.1 0.0 2.6 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.11 gi|385805180|ref|YP_005841578.1| - 0.51 10.3 6.3 1.2 9.2 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_ribbon_SprT PF17283.2 gi|385805180|ref|YP_005841578.1| - 0.77 9.7 5.7 7.3 6.6 0.9 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf_C2H2_10 PF18414.1 gi|385805180|ref|YP_005841578.1| - 1.1 8.9 3.7 18 5.0 0.1 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-C2H2 PF00096.26 gi|385805180|ref|YP_005841578.1| - 2.1 9.0 4.0 8.4 7.1 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type IF-2B PF01008.17 gi|385805182|ref|YP_005841580.1| - 1.8e-85 286.5 0.9 2.2e-85 286.3 0.9 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF3810 PF12725.7 gi|385805182|ref|YP_005841580.1| - 0.084 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) DUF4435 PF14491.6 gi|385805182|ref|YP_005841580.1| - 0.097 12.6 0.3 0.16 11.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4435) AA_permease_2 PF13520.6 gi|385805183|ref|YP_005841581.1| - 2.4e-27 95.9 57.7 3e-27 95.5 57.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385805183|ref|YP_005841581.1| - 1.2e-20 73.6 57.4 3e-20 72.3 57.4 1.7 1 1 0 1 1 1 1 Amino acid permease Trp_Tyr_perm PF03222.13 gi|385805183|ref|YP_005841581.1| - 0.028 13.4 32.2 0.013 14.6 29.9 1.6 1 1 0 1 1 1 0 Tryptophan/tyrosine permease family Aldedh PF00171.22 gi|385805184|ref|YP_005841582.1| - 1.3e-123 412.9 0.0 1.5e-123 412.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Acetyltransf_1 PF00583.25 gi|385805185|ref|YP_005841583.1| - 9.2e-20 71.0 0.5 2.8e-17 63.0 0.2 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385805185|ref|YP_005841583.1| - 4.5e-16 58.9 0.1 3.2e-13 49.7 0.1 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385805185|ref|YP_005841583.1| - 4.8e-13 49.3 2.1 5.4e-13 49.2 0.9 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|385805185|ref|YP_005841583.1| - 5.8e-07 29.8 1.0 5.8e-07 29.8 1.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|385805185|ref|YP_005841583.1| - 8.5e-06 26.5 0.0 1.4e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|385805185|ref|YP_005841583.1| - 0.00018 21.2 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4821) Acetyltransf_9 PF13527.7 gi|385805185|ref|YP_005841583.1| - 0.0045 17.1 0.0 0.034 14.2 0.0 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385805185|ref|YP_005841583.1| - 0.0067 16.4 0.1 0.012 15.6 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|385805185|ref|YP_005841583.1| - 0.018 14.7 0.0 0.043 13.5 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 gi|385805185|ref|YP_005841583.1| - 0.035 14.3 0.0 0.057 13.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|385805185|ref|YP_005841583.1| - 0.045 13.9 0.0 0.092 12.9 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase tRNA-synt_2c PF01411.19 gi|385805186|ref|YP_005841584.1| - 2.3e-11 42.9 0.1 3.9e-11 42.2 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|385805186|ref|YP_005841584.1| - 1.2e-07 31.7 0.3 3.2e-07 30.3 0.3 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain GramPos_pilinD1 PF16555.5 gi|385805186|ref|YP_005841584.1| - 0.014 15.5 0.1 0.063 13.4 0.1 1.9 1 1 0 1 1 1 0 Gram-positive pilin subunit D1, N-terminal domain Isochorismatase PF00857.20 gi|385805187|ref|YP_005841585.1| - 6e-38 130.8 0.0 7.1e-38 130.5 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family DUF1776 PF08643.10 gi|385805187|ref|YP_005841585.1| - 0.14 11.5 0.2 0.2 11.0 0.2 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) AA_permease_2 PF13520.6 gi|385805188|ref|YP_005841586.1| - 2.1e-38 132.3 61.2 2.8e-38 131.8 61.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385805188|ref|YP_005841586.1| - 2.7e-32 112.0 52.4 3.5e-32 111.6 52.4 1.1 1 0 0 1 1 1 1 Amino acid permease Phage_holin_1 PF04531.13 gi|385805188|ref|YP_005841586.1| - 8.6 7.0 12.4 1.6 9.3 3.4 3.0 2 0 0 2 2 2 0 Bacteriophage holin TRAP_beta PF05753.14 gi|385805189|ref|YP_005841587.1| - 3.8e-05 23.2 8.7 0.0062 15.9 0.5 3.6 3 2 0 3 3 3 2 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|385805189|ref|YP_005841587.1| - 0.00013 22.1 0.7 4.2 7.7 0.0 5.3 7 0 0 7 7 7 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|385805189|ref|YP_005841587.1| - 0.00071 19.8 20.1 0.0017 18.5 0.6 6.0 6 0 0 6 6 6 1 CARDB Staufen_C PF16482.5 gi|385805189|ref|YP_005841587.1| - 0.021 15.0 0.6 0.23 11.6 0.0 2.8 3 0 0 3 3 3 0 Staufen C-terminal domain DUF11 PF01345.18 gi|385805189|ref|YP_005841587.1| - 0.065 13.5 28.9 0.91 9.9 0.7 6.7 7 0 0 7 7 7 0 Domain of unknown function DUF11 DUF5305 PF17231.2 gi|385805189|ref|YP_005841587.1| - 0.57 9.5 6.8 0.54 9.6 0.5 3.4 2 1 1 3 3 3 0 Family of unknown function (DUF5305) Sec23_BS PF08033.12 gi|385805189|ref|YP_005841587.1| - 1.4 9.7 11.5 0.43 11.3 0.6 4.5 4 0 0 4 4 4 0 Sec23/Sec24 beta-sandwich domain MacB_PCD PF12704.7 gi|385805190|ref|YP_005841588.1| - 5.4e-17 62.8 4.5 5.4e-17 62.8 4.5 2.2 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|385805190|ref|YP_005841588.1| - 9.1e-11 42.1 8.2 9.1e-11 42.1 8.2 3.3 2 1 1 3 3 3 1 FtsX-like permease family DUF21 PF01595.20 gi|385805190|ref|YP_005841588.1| - 0.35 10.6 8.0 0.42 10.3 5.9 2.2 1 1 1 2 2 2 0 Cyclin M transmembrane N-terminal domain HTH_11 PF08279.12 gi|385805191|ref|YP_005841589.1| - 0.0011 18.9 0.2 0.0036 17.2 0.0 1.9 2 0 0 2 2 2 1 HTH domain Vps53_N PF04100.12 gi|385805191|ref|YP_005841589.1| - 0.032 13.2 1.0 0.043 12.8 1.0 1.1 1 0 0 1 1 1 0 Vps53-like, N-terminal HTH_40 PF14493.6 gi|385805191|ref|YP_005841589.1| - 0.048 14.1 2.2 0.078 13.4 1.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|385805191|ref|YP_005841589.1| - 0.063 13.1 0.1 0.15 11.9 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain VAPB_antitox PF02697.14 gi|385805192|ref|YP_005841590.1| - 0.022 15.5 0.5 0.028 15.2 0.5 1.3 1 0 0 1 1 1 0 Putative antitoxin 5-FTHF_cyc-lig PF01812.20 gi|385805192|ref|YP_005841590.1| - 0.028 14.3 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 5-formyltetrahydrofolate cyclo-ligase family DUF2663 PF10864.8 gi|385805192|ref|YP_005841590.1| - 0.056 13.8 0.0 0.056 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2663) PIN PF01850.21 gi|385805193|ref|YP_005841591.1| - 5.6e-11 43.0 3.8 1.7e-10 41.5 3.8 1.7 1 1 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|385805193|ref|YP_005841591.1| - 0.0076 16.0 0.1 0.091 12.5 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF5615) Terminase_4 PF05119.12 gi|385805193|ref|YP_005841591.1| - 0.013 15.9 0.5 0.018 15.5 0.5 1.2 1 0 0 1 1 1 0 Phage terminase, small subunit tRNA-synt_1d PF00750.19 gi|385805194|ref|YP_005841592.1| - 1.1e-33 116.6 2.6 1e-19 70.7 0.7 2.2 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|385805194|ref|YP_005841592.1| - 4.6e-24 84.9 1.1 2.7e-23 82.4 0.0 2.8 3 1 0 3 3 3 1 DALR anticodon binding domain tRNA-synt_1 PF00133.22 gi|385805194|ref|YP_005841592.1| - 0.057 11.7 0.0 0.15 10.3 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class I (I, L, M and V) Methyltransf_11 PF08241.12 gi|385805195|ref|YP_005841593.1| - 9.7e-15 55.0 0.0 1.5e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805195|ref|YP_005841593.1| - 1.9e-09 37.6 0.0 2.7e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385805195|ref|YP_005841593.1| - 7.8e-09 36.1 0.0 1.4e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385805195|ref|YP_005841593.1| - 2.7e-06 26.9 0.0 5.5e-05 22.6 0.0 2.3 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|385805195|ref|YP_005841593.1| - 1.3e-05 25.9 0.0 2.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805195|ref|YP_005841593.1| - 1.4e-05 24.9 0.0 2.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|385805195|ref|YP_005841593.1| - 0.055 13.1 0.0 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW CBS PF00571.28 gi|385805196|ref|YP_005841594.1| - 3.3e-22 78.7 4.0 5.1e-08 33.2 0.1 4.2 4 0 0 4 4 4 4 CBS domain DUF502 PF04367.13 gi|385805196|ref|YP_005841594.1| - 0.054 13.4 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF502) Lactamase_B_2 PF12706.7 gi|385805197|ref|YP_005841595.1| - 1.9e-23 83.0 0.0 2.3e-23 82.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385805197|ref|YP_005841595.1| - 4.9e-12 46.3 0.1 8e-12 45.6 0.0 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.15 gi|385805197|ref|YP_005841595.1| - 0.035 13.2 0.0 0.067 12.3 0.0 1.4 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II SBP_bac_1 PF01547.25 gi|385805198|ref|YP_005841596.1| - 6.3e-26 92.1 6.1 1e-25 91.3 6.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|385805198|ref|YP_005841596.1| - 7.4e-24 85.0 6.1 1e-23 84.6 6.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|385805198|ref|YP_005841596.1| - 0.0015 18.3 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|385805199|ref|YP_005841597.1| - 7.8e-22 77.9 47.0 3e-14 53.2 17.7 4.7 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|385805200|ref|YP_005841598.1| - 2.4e-33 115.6 0.0 4.9e-32 111.3 0.0 2.2 2 1 0 2 2 2 1 ABC transporter TOBE_2 PF08402.10 gi|385805200|ref|YP_005841598.1| - 1.8e-09 37.7 0.0 4.1e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|385805200|ref|YP_005841598.1| - 7.9e-07 29.2 0.3 0.019 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385805200|ref|YP_005841598.1| - 4.5e-06 26.3 0.1 0.0011 18.5 0.1 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.6 gi|385805200|ref|YP_005841598.1| - 0.0018 17.0 0.0 0.022 13.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|385805200|ref|YP_005841598.1| - 0.044 13.5 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|385805200|ref|YP_005841598.1| - 0.049 14.1 0.2 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Lycopene_cycl PF05834.12 gi|385805200|ref|YP_005841598.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 Lycopene cyclase protein AAA PF00004.29 gi|385805200|ref|YP_005841598.1| - 0.15 12.5 0.7 2.1 8.8 0.7 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|385805200|ref|YP_005841598.1| - 0.15 12.3 0.5 0.49 10.7 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|385805200|ref|YP_005841598.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385805200|ref|YP_005841598.1| - 0.16 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|385805200|ref|YP_005841598.1| - 0.25 11.6 0.5 4.2 7.7 0.1 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DHHA1 PF02272.19 gi|385805201|ref|YP_005841599.1| - 2.1e-07 31.5 0.0 4.7e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|385805201|ref|YP_005841599.1| - 0.01 16.1 0.2 0.038 14.2 0.1 1.9 1 1 1 2 2 2 1 DHH family DNA_binding_1 PF01035.20 gi|385805203|ref|YP_005841601.1| - 6.3e-22 77.5 0.0 8e-22 77.2 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain ParA PF10609.9 gi|385805204|ref|YP_005841602.1| - 3.9e-75 252.5 0.0 4.9e-75 252.2 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|385805204|ref|YP_005841602.1| - 3.5e-15 56.2 0.0 1.9e-14 53.8 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|385805204|ref|YP_005841602.1| - 7.7e-10 39.0 0.1 1.4e-08 34.9 0.1 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|385805204|ref|YP_005841602.1| - 1.4e-07 31.0 0.6 1.4e-07 31.0 0.6 2.2 2 1 1 3 3 3 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|385805204|ref|YP_005841602.1| - 1.9e-06 27.5 0.1 0.048 13.1 0.0 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|385805204|ref|YP_005841602.1| - 0.00015 21.6 0.1 0.069 13.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|385805204|ref|YP_005841602.1| - 0.00092 18.6 0.0 0.0018 17.6 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ IstB_IS21 PF01695.17 gi|385805204|ref|YP_005841602.1| - 0.0048 16.6 0.0 0.0079 15.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein NB-ARC PF00931.22 gi|385805204|ref|YP_005841602.1| - 0.0084 15.3 0.1 0.016 14.4 0.1 1.4 1 0 0 1 1 1 1 NB-ARC domain SRP54 PF00448.22 gi|385805204|ref|YP_005841602.1| - 0.0095 15.6 0.1 0.019 14.6 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|385805204|ref|YP_005841602.1| - 0.011 15.2 0.1 0.021 14.3 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|385805204|ref|YP_005841602.1| - 0.031 14.3 0.1 0.064 13.3 0.1 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit APS_kinase PF01583.20 gi|385805204|ref|YP_005841602.1| - 0.057 13.3 0.0 0.089 12.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_16 PF13191.6 gi|385805204|ref|YP_005841602.1| - 0.074 13.4 0.0 0.15 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|385805204|ref|YP_005841602.1| - 0.077 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|385805204|ref|YP_005841602.1| - 0.15 12.0 0.0 0.48 10.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|385805204|ref|YP_005841602.1| - 0.18 11.4 0.2 0.35 10.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain Peptidase_M50 PF02163.22 gi|385805205|ref|YP_005841603.1| - 2.9e-16 59.5 9.2 1.8e-15 56.9 9.2 2.2 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|385805205|ref|YP_005841603.1| - 7.7e-06 26.1 0.0 1.6e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|385805205|ref|YP_005841603.1| - 8.9e-06 25.5 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|385805205|ref|YP_005841603.1| - 0.00097 19.4 0.5 0.0025 18.1 0.1 1.8 2 0 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 gi|385805205|ref|YP_005841603.1| - 0.034 14.1 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain 7TMR-DISMED2 PF07696.11 gi|385805205|ref|YP_005841603.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 7TMR-DISM extracellular 2 Thioredoxin_3 PF13192.6 gi|385805206|ref|YP_005841604.1| - 2.8e-29 101.0 1.1 4.5e-15 55.4 0.3 2.3 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.24 gi|385805206|ref|YP_005841604.1| - 2.9e-09 37.0 1.5 0.00059 20.0 0.1 2.8 2 1 0 2 2 2 2 Glutaredoxin TraF PF13728.6 gi|385805206|ref|YP_005841604.1| - 3.5e-06 27.0 0.1 0.0025 17.7 0.0 2.5 2 1 0 2 2 2 2 F plasmid transfer operon protein Thioredoxin PF00085.20 gi|385805206|ref|YP_005841604.1| - 2.1e-05 24.5 0.1 0.032 14.2 0.1 2.2 2 0 0 2 2 2 2 Thioredoxin ABC_transp_aux PF09822.9 gi|385805206|ref|YP_005841604.1| - 0.00051 19.6 0.6 0.021 14.3 0.1 2.1 1 1 1 2 2 2 1 ABC-type uncharacterized transport system Thioredoxin_2 PF13098.6 gi|385805206|ref|YP_005841604.1| - 0.0011 19.3 6.4 0.037 14.5 0.8 3.5 2 2 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|385805206|ref|YP_005841604.1| - 0.0018 18.5 4.4 0.47 10.6 0.0 3.5 3 1 1 4 4 4 2 Thioredoxin DUF836 PF05768.14 gi|385805206|ref|YP_005841604.1| - 0.0062 16.9 0.1 1.9 9.0 0.0 2.5 2 0 0 2 2 2 2 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.6 gi|385805206|ref|YP_005841604.1| - 0.038 13.8 0.2 0.72 9.6 0.1 2.2 1 1 1 2 2 2 0 Thioredoxin Cob_adeno_trans PF01923.18 gi|385805207|ref|YP_005841605.1| - 2.6e-35 122.0 0.0 2.9e-35 121.8 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF1940 PF09155.10 gi|385805207|ref|YP_005841605.1| - 0.014 15.5 0.0 0.035 14.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1940) DUF211 PF02680.14 gi|385805208|ref|YP_005841606.1| - 1e-29 102.5 6.3 1.1e-29 102.4 6.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 YabP PF07873.11 gi|385805208|ref|YP_005841606.1| - 0.041 13.7 4.9 0.066 13.0 4.9 1.3 1 0 0 1 1 1 0 YabP family Synapsin PF02078.16 gi|385805209|ref|YP_005841607.1| - 0.063 13.6 0.2 6.1 7.2 0.0 2.8 2 1 0 2 2 2 0 Synapsin, N-terminal domain Lys_export PF03956.13 gi|385805210|ref|YP_005841608.1| - 9.2e-36 123.2 9.3 1.1e-35 122.9 9.3 1.0 1 0 0 1 1 1 1 Lysine exporter LysO DUF4149 PF13664.6 gi|385805210|ref|YP_005841608.1| - 0.62 10.4 8.7 3.2 8.1 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) FeoB_C PF07664.12 gi|385805210|ref|YP_005841608.1| - 0.7 9.6 0.1 0.7 9.6 0.1 2.8 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus DUF2070 PF09843.9 gi|385805210|ref|YP_005841608.1| - 4.2 5.6 11.3 5.7 5.1 11.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ATP_bind_3 PF01171.20 gi|385805212|ref|YP_005841610.1| - 4.5e-11 42.8 0.0 9.5e-11 41.8 0.0 1.6 1 1 0 1 1 1 1 PP-loop family DUF2175 PF09943.9 gi|385805212|ref|YP_005841610.1| - 0.17 12.2 1.8 0.29 11.5 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) DUF4428 PF14471.6 gi|385805212|ref|YP_005841610.1| - 0.19 11.7 0.2 0.19 11.7 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) DHHA1 PF02272.19 gi|385805213|ref|YP_005841611.1| - 0.00012 22.5 1.0 0.00039 20.9 1.0 1.8 2 0 0 2 2 2 1 DHHA1 domain RNA_pol_A_CTD PF03118.15 gi|385805213|ref|YP_005841611.1| - 0.072 12.9 0.1 2.4 8.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain kleA_kleC PF17383.2 gi|385805213|ref|YP_005841611.1| - 0.2 12.0 1.4 0.64 10.4 0.4 2.1 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A ATPase PF06745.13 gi|385805214|ref|YP_005841612.1| - 5.1e-86 287.8 0.3 5.8e-86 287.6 0.3 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|385805214|ref|YP_005841612.1| - 6.4e-08 31.7 0.0 8.6e-08 31.2 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|385805214|ref|YP_005841612.1| - 5.9e-07 29.2 0.0 9.5e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|385805214|ref|YP_005841612.1| - 4e-05 23.0 0.3 0.00035 19.9 0.1 1.9 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|385805214|ref|YP_005841612.1| - 0.00014 21.3 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.6 gi|385805214|ref|YP_005841612.1| - 0.00024 21.1 0.0 0.00049 20.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|385805214|ref|YP_005841612.1| - 0.00039 20.2 0.1 0.0019 18.0 0.1 2.0 2 1 0 2 2 2 1 AAA domain Rad51 PF08423.11 gi|385805214|ref|YP_005841612.1| - 0.0006 19.2 0.4 0.0086 15.4 0.4 2.1 1 1 0 1 1 1 1 Rad51 RecA PF00154.21 gi|385805214|ref|YP_005841612.1| - 0.0015 18.0 0.1 0.064 12.7 0.0 2.1 2 0 0 2 2 2 1 recA bacterial DNA recombination protein ATPase_2 PF01637.18 gi|385805214|ref|YP_005841612.1| - 0.0019 18.2 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|385805214|ref|YP_005841612.1| - 0.002 18.4 0.2 0.0048 17.2 0.1 1.6 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|385805214|ref|YP_005841612.1| - 0.0052 16.5 0.0 0.0099 15.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein T2SSE PF00437.20 gi|385805214|ref|YP_005841612.1| - 0.0071 15.4 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|385805214|ref|YP_005841612.1| - 0.0083 16.0 1.5 0.016 15.1 1.5 1.4 1 1 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|385805214|ref|YP_005841612.1| - 0.019 15.4 0.0 0.027 14.9 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain MEDS PF14417.6 gi|385805214|ref|YP_005841612.1| - 0.021 14.7 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_28 PF13521.6 gi|385805214|ref|YP_005841612.1| - 0.021 15.1 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|385805214|ref|YP_005841612.1| - 0.023 13.8 0.0 0.081 12.1 0.0 1.7 1 1 0 2 2 2 0 PAXNEB protein AAA_22 PF13401.6 gi|385805214|ref|YP_005841612.1| - 0.03 14.6 0.1 0.049 13.9 0.1 1.5 1 1 0 1 1 1 0 AAA domain PPV_E1_C PF00519.17 gi|385805214|ref|YP_005841612.1| - 0.04 12.7 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA_30 PF13604.6 gi|385805214|ref|YP_005841612.1| - 0.059 13.1 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|385805214|ref|YP_005841612.1| - 0.069 12.2 0.0 0.17 10.9 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|385805214|ref|YP_005841612.1| - 0.095 12.6 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|385805214|ref|YP_005841612.1| - 0.13 11.7 0.1 0.32 10.5 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region Amidohydro_3 PF07969.11 gi|385805215|ref|YP_005841613.1| - 2.4e-118 396.6 0.0 3.1e-118 396.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|385805215|ref|YP_005841613.1| - 8.8e-16 58.1 0.0 2.1e-11 43.7 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family adh_short_C2 PF13561.6 gi|385805216|ref|YP_005841614.1| - 3.9e-79 265.5 0.1 4.4e-79 265.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385805216|ref|YP_005841614.1| - 5.1e-61 205.5 0.4 6e-61 205.3 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385805216|ref|YP_005841614.1| - 3e-13 50.1 0.0 4.6e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385805216|ref|YP_005841614.1| - 5.8e-05 22.7 0.2 8.6e-05 22.1 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|385805216|ref|YP_005841614.1| - 0.0068 16.3 0.2 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|385805216|ref|YP_005841614.1| - 0.01 15.3 0.1 0.015 14.7 0.1 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase ABC_sub_bind PF04392.12 gi|385805216|ref|YP_005841614.1| - 0.037 13.3 0.0 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 ABC transporter substrate binding protein DUF5012 PF16404.5 gi|385805216|ref|YP_005841614.1| - 0.052 13.7 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5012) YPEB PF14620.6 gi|385805216|ref|YP_005841614.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.1 1 0 0 1 1 1 0 YpeB sporulation ATPase_2 PF01637.18 gi|385805220|ref|YP_005841618.1| - 1.1e-15 58.2 0.3 1.1e-15 58.2 0.3 1.9 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|385805220|ref|YP_005841618.1| - 6.2e-10 39.2 0.1 0.00081 19.4 0.0 2.8 2 1 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|385805220|ref|YP_005841618.1| - 4.2e-06 27.1 0.1 1.3e-05 25.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|385805220|ref|YP_005841618.1| - 0.0032 17.9 0.0 0.0093 16.4 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain PUB PF09409.10 gi|385805220|ref|YP_005841618.1| - 0.11 12.5 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 PUB domain BTB_3 PF16017.5 gi|385805220|ref|YP_005841618.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 BTB/POZ domain AAA PF00004.29 gi|385805220|ref|YP_005841618.1| - 0.13 12.7 0.0 0.43 11.0 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BLOC1_2 PF10046.9 gi|385805220|ref|YP_005841618.1| - 0.14 12.4 1.0 16 5.9 0.1 3.1 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Rubrerythrin PF02915.17 gi|385805221|ref|YP_005841619.1| - 3.8e-06 27.3 2.3 0.017 15.5 0.2 2.2 1 1 0 1 1 1 1 Rubrerythrin RuBisCO_large_N PF02788.16 gi|385805221|ref|YP_005841619.1| - 0.0038 17.4 0.0 0.0055 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain CHCH PF06747.13 gi|385805221|ref|YP_005841619.1| - 0.2 11.8 0.8 0.62 10.3 0.2 2.0 2 0 0 2 2 2 0 CHCH domain Aminotran_3 PF00202.21 gi|385805222|ref|YP_005841620.1| - 5.4e-117 390.9 0.0 6.5e-117 390.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF4159 PF13709.6 gi|385805222|ref|YP_005841620.1| - 0.057 12.8 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Thermopsin PF05317.11 gi|385805223|ref|YP_005841621.1| - 6.8e-87 291.2 17.5 6.8e-87 291.2 17.5 2.5 3 1 1 4 4 4 1 Thermopsin Ig_3 PF13927.6 gi|385805223|ref|YP_005841621.1| - 5.2e-08 33.4 1.0 0.098 13.3 0.0 5.3 7 0 0 7 7 7 2 Immunoglobulin domain Cadherin-like PF12733.7 gi|385805223|ref|YP_005841621.1| - 1.6e-06 28.6 4.0 0.0068 16.9 0.1 4.3 4 1 0 4 4 4 2 Cadherin-like beta sandwich domain BiPBP_C PF06832.12 gi|385805223|ref|YP_005841621.1| - 2.9e-05 24.0 0.0 0.025 14.6 0.0 2.9 3 0 0 3 3 3 2 Penicillin-Binding Protein C-terminus Family PKD_3 PF16820.5 gi|385805223|ref|YP_005841621.1| - 5.2e-05 22.9 0.3 0.12 12.1 0.0 3.4 2 1 1 3 3 3 2 PKD-like domain ChitinaseA_N PF08329.10 gi|385805223|ref|YP_005841621.1| - 0.0064 16.1 0.1 2.1 8.0 0.0 2.8 3 1 0 3 3 3 2 Chitinase A, N-terminal domain Ig_2 PF13895.6 gi|385805223|ref|YP_005841621.1| - 0.059 13.7 4.9 1.3 9.5 0.1 4.4 5 1 0 5 5 5 0 Immunoglobulin domain L51_S25_CI-B8 PF05047.16 gi|385805223|ref|YP_005841621.1| - 0.79 9.7 0.0 0.79 9.7 0.0 2.8 4 0 0 4 4 4 0 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain SprB PF13573.6 gi|385805223|ref|YP_005841621.1| - 1.8 8.4 33.4 0.34 10.7 1.4 5.8 6 0 0 6 6 6 0 SprB repeat Nramp PF01566.18 gi|385805224|ref|YP_005841622.1| - 4.9e-52 177.1 10.4 6e-52 176.8 10.4 1.0 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PSI_PsaF PF02507.15 gi|385805224|ref|YP_005841622.1| - 0.053 13.4 0.1 9.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Photosystem I reaction centre subunit III Nramp PF01566.18 gi|385805225|ref|YP_005841623.1| - 3.8e-28 98.5 4.6 3.8e-28 98.5 4.6 1.5 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein NTP_transf_2 PF01909.23 gi|385805226|ref|YP_005841624.1| - 2.8e-11 43.6 0.9 3.6e-11 43.2 0.9 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|385805226|ref|YP_005841624.1| - 8e-09 35.5 0.8 1.1e-08 35.0 0.8 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|385805226|ref|YP_005841624.1| - 0.00015 21.9 0.0 0.00018 21.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm HEPN PF05168.14 gi|385805227|ref|YP_005841625.1| - 9.9e-11 41.8 0.4 1e-10 41.7 0.4 1.0 1 0 0 1 1 1 1 HEPN domain DUF3644 PF12358.8 gi|385805227|ref|YP_005841625.1| - 0.015 15.7 0.1 0.33 11.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3644) Radical_SAM PF04055.21 gi|385805228|ref|YP_005841626.1| - 1.2e-10 42.0 0.3 3.3e-10 40.6 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|385805228|ref|YP_005841626.1| - 1.9e-09 37.9 0.0 4.1e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|385805228|ref|YP_005841626.1| - 0.00013 22.1 0.4 0.00034 20.7 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF1064 PF06356.11 gi|385805228|ref|YP_005841626.1| - 0.088 13.2 0.1 1.5 9.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1064) z-alpha PF02295.17 gi|385805229|ref|YP_005841627.1| - 0.00085 19.3 0.1 0.0018 18.3 0.1 1.5 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain MarR PF01047.22 gi|385805229|ref|YP_005841627.1| - 0.0013 18.6 0.1 0.0025 17.7 0.1 1.4 1 0 0 1 1 1 1 MarR family TBPIP PF07106.13 gi|385805229|ref|YP_005841627.1| - 0.0054 16.6 0.0 0.014 15.3 0.0 1.7 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_IclR PF09339.10 gi|385805229|ref|YP_005841627.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|385805229|ref|YP_005841627.1| - 0.014 15.3 0.1 0.038 13.9 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|385805229|ref|YP_005841627.1| - 0.016 15.5 0.1 0.045 14.1 0.1 1.8 2 0 0 2 2 1 0 Transcriptional regulator HTH_46 PF15977.5 gi|385805229|ref|YP_005841627.1| - 0.021 14.8 0.3 0.076 13.0 0.3 2.0 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Mnd1 PF03962.15 gi|385805229|ref|YP_005841627.1| - 0.03 14.6 0.0 0.19 12.0 0.0 2.5 2 0 0 2 2 2 0 Mnd1 HTH domain MarR_2 PF12802.7 gi|385805229|ref|YP_005841627.1| - 0.056 13.3 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family PAX PF00292.18 gi|385805229|ref|YP_005841627.1| - 0.057 13.3 0.5 0.2 11.6 0.0 2.1 3 0 0 3 3 3 0 'Paired box' domain MRFAP1 PF15155.6 gi|385805229|ref|YP_005841627.1| - 0.081 13.5 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 MORF4 family-associated protein1 HTH_Crp_2 PF13545.6 gi|385805229|ref|YP_005841627.1| - 0.086 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NMT1_2 PF13379.6 gi|385805229|ref|YP_005841627.1| - 0.099 12.3 0.0 2.7 7.6 0.0 2.1 2 0 0 2 2 2 0 NMT1-like family HTH_24 PF13412.6 gi|385805229|ref|YP_005841627.1| - 0.15 11.7 0.3 0.31 10.6 0.3 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LysR_substrate PF03466.20 gi|385805229|ref|YP_005841627.1| - 0.26 10.6 0.0 0.37 10.1 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain SSF PF00474.17 gi|385805231|ref|YP_005841629.1| - 8.2e-23 80.9 37.9 1.3e-22 80.2 37.9 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family BPL_LplA_LipB PF03099.19 gi|385805231|ref|YP_005841629.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Fe-ADH PF00465.19 gi|385805232|ref|YP_005841630.1| - 2.6e-92 309.5 0.1 3.1e-92 309.2 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|385805232|ref|YP_005841630.1| - 6.2e-14 52.3 0.2 4.9e-10 39.5 0.0 2.1 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase KH_8 PF17903.1 gi|385805232|ref|YP_005841630.1| - 0.017 15.2 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 0 Krr1 KH1 domain HMG-CoA_red PF00368.18 gi|385805233|ref|YP_005841631.1| - 1.4e-109 366.5 7.3 1.7e-109 366.2 7.3 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase RecO_N_2 PF13114.6 gi|385805233|ref|YP_005841631.1| - 0.088 12.5 0.2 3.4 7.4 0.0 3.0 3 0 0 3 3 3 0 RecO N terminal G_glu_transpept PF01019.21 gi|385805234|ref|YP_005841632.1| - 9.5e-107 357.9 0.0 1.1e-106 357.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase DEAD PF00270.29 gi|385805235|ref|YP_005841633.1| - 6.9e-17 61.8 0.0 1.3e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385805235|ref|YP_005841633.1| - 2.4e-15 56.8 0.1 1.7e-14 54.1 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385805235|ref|YP_005841633.1| - 9.5e-06 25.7 0.1 2.4e-05 24.4 0.1 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Flavi_DEAD PF07652.14 gi|385805235|ref|YP_005841633.1| - 0.009 16.0 0.0 1.6 8.7 0.0 2.4 2 0 0 2 2 2 2 Flavivirus DEAD domain T2SSE PF00437.20 gi|385805235|ref|YP_005841633.1| - 0.11 11.5 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Siah-Interact_N PF09032.11 gi|385805235|ref|YP_005841633.1| - 1.2 9.5 6.6 0.33 11.3 0.4 2.8 3 0 0 3 3 3 0 Siah interacting protein, N terminal MoCF_biosynth PF00994.24 gi|385805236|ref|YP_005841634.1| - 3.7e-28 98.0 0.0 4.5e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|385805237|ref|YP_005841635.1| - 1.2e-48 164.8 0.0 2.2e-48 164.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|385805237|ref|YP_005841635.1| - 1.7e-37 128.6 0.0 3e-37 127.8 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|385805237|ref|YP_005841635.1| - 2.4e-24 85.6 0.0 3.9e-24 84.9 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|385805237|ref|YP_005841635.1| - 3.2e-12 46.4 0.0 7.3e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|385805237|ref|YP_005841635.1| - 3.6e-05 23.6 0.0 6.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|385805237|ref|YP_005841635.1| - 0.0023 17.5 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MoeA_N PF03453.17 gi|385805238|ref|YP_005841636.1| - 4.1e-32 111.1 0.0 6.1e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|385805238|ref|YP_005841636.1| - 1.2e-23 83.4 0.0 1.8e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|385805238|ref|YP_005841636.1| - 3.8e-14 52.6 0.0 8e-14 51.6 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) T2SSE PF00437.20 gi|385805238|ref|YP_005841636.1| - 0.001 18.2 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|385805238|ref|YP_005841636.1| - 0.013 15.4 0.2 3.3 7.6 0.1 2.4 1 1 1 2 2 2 0 Intein splicing domain Mob_synth_C PF06463.13 gi|385805239|ref|YP_005841637.1| - 1.3e-15 57.4 0.0 1.9e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 gi|385805239|ref|YP_005841637.1| - 1e-14 55.3 0.0 2.7e-14 53.9 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|385805239|ref|YP_005841637.1| - 0.0047 17.2 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|385805239|ref|YP_005841637.1| - 0.0071 16.5 0.0 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain PDU_like PF15953.5 gi|385805239|ref|YP_005841637.1| - 0.047 13.8 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative propanediol utilisation YcgL PF05166.13 gi|385805239|ref|YP_005841637.1| - 0.078 13.3 0.0 0.2 12.0 0.0 1.7 1 0 0 1 1 1 0 YcgL domain MoaC PF01967.21 gi|385805240|ref|YP_005841638.1| - 1.7e-44 151.2 0.7 2.1e-44 150.9 0.7 1.0 1 0 0 1 1 1 1 MoaC family AFOR_C PF01314.18 gi|385805241|ref|YP_005841639.1| - 9.8e-143 475.7 0.0 1.2e-142 475.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|385805241|ref|YP_005841639.1| - 1.9e-84 282.4 0.2 3e-84 281.8 0.2 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|385805242|ref|YP_005841640.1| - 1.3e-17 64.2 0.1 1.4e-17 64.1 0.1 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|385805242|ref|YP_005841640.1| - 0.016 15.5 0.5 0.029 14.7 0.5 1.4 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Lambda_tail_I PF06805.12 gi|385805242|ref|YP_005841640.1| - 0.022 15.1 0.0 0.027 14.8 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I SPASM PF13186.6 gi|385805243|ref|YP_005841641.1| - 3.3e-16 59.6 0.6 3.3e-16 59.6 0.6 2.3 3 0 0 3 3 3 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|385805243|ref|YP_005841641.1| - 4e-14 53.3 0.1 2.9e-11 44.0 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|385805243|ref|YP_005841641.1| - 2e-07 31.1 0.0 5.2e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|385805243|ref|YP_005841641.1| - 2.7e-07 31.0 0.1 8.2e-07 29.4 0.1 1.8 1 1 1 2 2 2 1 4Fe-4S single cluster domain PAH PF02671.21 gi|385805243|ref|YP_005841641.1| - 0.044 13.9 0.2 16 5.7 0.0 2.7 2 1 0 2 2 2 0 Paired amphipathic helix repeat Peptidase_S9 PF00326.21 gi|385805244|ref|YP_005841642.1| - 2.7e-55 187.1 0.2 4.1e-55 186.5 0.2 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|385805244|ref|YP_005841642.1| - 5.8e-17 61.1 0.9 0.00048 20.0 0.0 5.0 4 0 0 4 4 4 4 WD40-like Beta Propeller Repeat DPPIV_N PF00930.21 gi|385805244|ref|YP_005841642.1| - 5.5e-09 35.2 0.1 0.016 14.0 0.0 3.7 2 2 0 3 3 3 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S15 PF02129.18 gi|385805244|ref|YP_005841642.1| - 3.8e-08 33.3 0.1 0.0033 17.1 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|385805244|ref|YP_005841642.1| - 5.3e-08 31.9 0.4 1.1e-05 24.3 0.1 2.8 2 1 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|385805244|ref|YP_005841642.1| - 1.7e-07 31.1 0.3 0.00015 21.5 0.5 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|385805244|ref|YP_005841642.1| - 9.4e-07 28.3 0.5 0.024 13.9 0.0 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|385805244|ref|YP_005841642.1| - 1.2e-05 25.0 0.0 4.9e-05 23.0 0.0 2.0 2 1 0 2 2 2 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|385805244|ref|YP_005841642.1| - 0.0045 16.2 0.1 0.068 12.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) Kelch_6 PF13964.6 gi|385805244|ref|YP_005841642.1| - 0.0073 16.6 0.5 26 5.3 0.0 4.9 6 0 0 6 6 6 0 Kelch motif PhoPQ_related PF10142.9 gi|385805244|ref|YP_005841642.1| - 0.044 12.4 0.0 0.068 11.8 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein Abhydrolase_3 PF07859.13 gi|385805244|ref|YP_005841642.1| - 0.088 12.7 0.0 0.69 9.7 0.0 2.2 1 1 0 1 1 1 0 alpha/beta hydrolase fold Mem_trans PF03547.18 gi|385805245|ref|YP_005841643.1| - 1.4e-10 40.2 35.0 3.6e-06 25.6 12.1 2.1 1 1 1 2 2 2 2 Membrane transport protein Arginase PF00491.21 gi|385805246|ref|YP_005841644.1| - 1.4e-66 224.9 0.0 1.6e-66 224.7 0.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.13 gi|385805247|ref|YP_005841645.1| - 4.5e-06 26.2 7.0 1.5e-05 24.6 7.0 1.8 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|385805247|ref|YP_005841645.1| - 0.0032 17.1 1.6 1 9.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|385805247|ref|YP_005841645.1| - 0.0051 16.8 0.1 0.0066 16.4 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_recom PF13408.6 gi|385805247|ref|YP_005841645.1| - 0.023 15.2 0.7 5.7 7.5 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zinc_ribbon_10 PF10058.9 gi|385805247|ref|YP_005841645.1| - 0.043 13.6 0.2 0.86 9.4 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF3268 PF11672.8 gi|385805247|ref|YP_005841645.1| - 0.049 14.0 0.2 3.1 8.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain zf_UBZ PF18439.1 gi|385805247|ref|YP_005841645.1| - 0.062 12.9 2.0 0.093 12.3 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|385805247|ref|YP_005841645.1| - 0.072 12.8 1.6 3.7 7.4 0.5 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-TFIIB PF13453.6 gi|385805247|ref|YP_005841645.1| - 0.091 12.1 0.7 0.12 11.7 0.7 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-BED PF02892.15 gi|385805247|ref|YP_005841645.1| - 2.5 8.2 5.5 1.5 8.9 1.5 2.0 1 1 1 2 2 2 0 BED zinc finger PCMT PF01135.19 gi|385805248|ref|YP_005841646.1| - 3.6e-64 216.4 0.0 4.3e-64 216.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|385805248|ref|YP_005841646.1| - 1.3e-09 38.0 0.0 1.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|385805248|ref|YP_005841646.1| - 1.7e-05 24.6 0.0 2.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|385805248|ref|YP_005841646.1| - 2e-05 25.6 0.0 3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|385805248|ref|YP_005841646.1| - 6.7e-05 22.1 0.0 8.9e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.6 gi|385805248|ref|YP_005841646.1| - 0.00036 21.2 0.0 0.00056 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385805248|ref|YP_005841646.1| - 0.0023 18.5 0.0 0.004 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|385805248|ref|YP_005841646.1| - 0.003 17.5 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|385805248|ref|YP_005841646.1| - 0.03 14.0 0.0 0.071 12.7 0.0 1.6 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|385805248|ref|YP_005841646.1| - 0.041 12.9 0.0 0.065 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|385805248|ref|YP_005841646.1| - 0.089 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF3540 PF12059.8 gi|385805248|ref|YP_005841646.1| - 0.12 12.2 0.0 0.48 10.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3540) DUF371 PF04027.13 gi|385805249|ref|YP_005841647.1| - 8e-48 161.8 0.5 9.2e-48 161.6 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Met_10 PF02475.16 gi|385805250|ref|YP_005841648.1| - 4.4e-46 157.1 1.0 6.4e-46 156.6 1.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein DNA_methylase PF00145.17 gi|385805250|ref|YP_005841648.1| - 9.6e-07 28.5 0.0 1.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase MTS PF05175.14 gi|385805250|ref|YP_005841648.1| - 1.1e-05 25.1 0.0 1.8e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|385805250|ref|YP_005841648.1| - 1.9e-05 24.0 0.8 4.4e-05 22.8 0.8 1.6 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.15 gi|385805250|ref|YP_005841648.1| - 0.00024 20.9 0.4 0.00065 19.5 0.1 1.8 2 0 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.15 gi|385805250|ref|YP_005841648.1| - 0.001 18.7 0.0 0.0015 18.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.13 gi|385805250|ref|YP_005841648.1| - 0.0012 18.3 1.3 0.0017 17.8 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|385805250|ref|YP_005841648.1| - 0.0012 19.5 0.0 0.0029 18.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|385805250|ref|YP_005841648.1| - 0.0014 18.3 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_16 PF10294.9 gi|385805250|ref|YP_005841648.1| - 0.0038 17.0 0.1 0.0054 16.5 0.1 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|385805250|ref|YP_005841648.1| - 0.0046 16.8 0.2 0.014 15.2 0.2 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|385805250|ref|YP_005841648.1| - 0.013 15.1 0.1 0.029 14.0 0.1 1.5 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Metallophos PF00149.28 gi|385805251|ref|YP_005841649.1| - 4.7e-25 89.3 1.3 7.4e-25 88.7 1.3 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385805251|ref|YP_005841649.1| - 0.0042 17.3 0.0 0.0062 16.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF2258 PF10015.9 gi|385805252|ref|YP_005841650.1| - 8.1e-28 96.4 0.3 8.1e-28 96.4 0.3 1.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) SWIRM PF04433.17 gi|385805253|ref|YP_005841651.1| - 0.16 12.3 3.4 0.2 12.0 1.6 2.0 2 1 1 3 3 3 0 SWIRM domain zf-C2H2_4 PF13894.6 gi|385805254|ref|YP_005841652.1| - 0.071 14.0 0.3 0.12 13.3 0.3 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger Radical_SAM PF04055.21 gi|385805255|ref|YP_005841653.1| - 2.5e-16 60.5 0.5 5e-16 59.5 0.2 1.7 2 0 0 2 2 2 1 Radical SAM superfamily TrmB PF01978.19 gi|385805257|ref|YP_005841655.1| - 1.3e-05 25.0 0.0 2.7e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385805257|ref|YP_005841655.1| - 3.5e-05 23.6 0.0 6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|385805257|ref|YP_005841655.1| - 4.5e-05 23.3 0.0 9.2e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|385805257|ref|YP_005841655.1| - 0.0013 18.5 0.0 0.005 16.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|385805257|ref|YP_005841655.1| - 0.0037 17.3 0.1 0.0078 16.2 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385805257|ref|YP_005841655.1| - 0.021 14.7 0.0 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|385805257|ref|YP_005841655.1| - 0.028 14.9 0.0 0.11 13.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.15 gi|385805257|ref|YP_005841655.1| - 0.049 13.3 0.0 0.3 10.8 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF4423 PF14394.6 gi|385805257|ref|YP_005841655.1| - 0.055 13.2 0.2 0.49 10.1 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) COR PF16095.5 gi|385805257|ref|YP_005841655.1| - 0.071 12.9 0.1 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 C-terminal of Roc, COR, domain PLN_propep PF16485.5 gi|385805257|ref|YP_005841655.1| - 0.095 12.4 1.7 0.2 11.4 0.1 2.4 2 1 0 2 2 2 0 Protealysin propeptide QueC PF06508.13 gi|385805258|ref|YP_005841656.1| - 6.2e-40 136.9 0.2 9.3e-40 136.4 0.2 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|385805258|ref|YP_005841656.1| - 6.1e-05 22.7 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) CRT-like PF08627.10 gi|385805258|ref|YP_005841656.1| - 0.13 11.2 0.2 0.2 10.6 0.2 1.2 1 0 0 1 1 1 0 CRT-like, chloroquine-resistance transporter-like ECF-ribofla_trS PF07155.12 gi|385805259|ref|YP_005841657.1| - 6.1e-28 98.0 21.2 2.3e-21 76.6 11.2 2.0 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component DUF2207 PF09972.9 gi|385805259|ref|YP_005841657.1| - 0.37 9.5 7.0 0.57 8.9 7.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 gi|385805260|ref|YP_005841658.1| - 9.3e-41 139.6 2.0 7.7e-23 81.5 0.0 3.5 3 1 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 gi|385805260|ref|YP_005841658.1| - 5.4e-17 62.6 17.1 8.3e-09 35.7 0.4 4.2 2 2 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385805260|ref|YP_005841658.1| - 2.6e-10 40.1 1.7 2.8e-05 23.7 0.0 4.0 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|385805260|ref|YP_005841658.1| - 4.1e-10 39.9 7.0 0.017 14.9 0.4 4.1 3 1 1 4 4 4 3 AAA ATPase domain T2SSE PF00437.20 gi|385805260|ref|YP_005841658.1| - 5.5e-08 32.2 1.1 0.0052 15.9 0.1 2.6 2 1 0 2 2 2 2 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|385805260|ref|YP_005841658.1| - 6.4e-07 29.4 0.4 0.00042 20.3 0.2 2.7 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|385805260|ref|YP_005841658.1| - 8.3e-07 29.7 14.8 0.00031 21.3 1.6 3.3 2 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|385805260|ref|YP_005841658.1| - 8.8e-07 29.5 0.1 0.053 13.9 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|385805260|ref|YP_005841658.1| - 2.4e-06 27.9 0.0 0.027 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|385805260|ref|YP_005841658.1| - 8e-06 25.5 6.8 0.0051 16.5 0.1 3.0 4 0 0 4 4 2 2 P-loop containing region of AAA domain AAA PF00004.29 gi|385805260|ref|YP_005841658.1| - 1.8e-05 25.2 4.1 0.096 13.1 0.1 3.3 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|385805260|ref|YP_005841658.1| - 2e-05 24.0 0.2 0.46 9.8 0.0 3.1 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|385805260|ref|YP_005841658.1| - 4.6e-05 23.2 0.0 0.4 10.4 0.0 2.6 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|385805260|ref|YP_005841658.1| - 0.00011 22.8 1.2 0.3 11.6 0.3 3.7 3 1 0 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|385805260|ref|YP_005841658.1| - 0.00014 21.9 1.7 0.36 10.8 0.1 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|385805260|ref|YP_005841658.1| - 0.00019 21.4 0.2 0.14 12.1 0.0 2.7 3 0 0 3 3 2 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|385805260|ref|YP_005841658.1| - 0.00021 21.0 0.9 0.93 9.2 0.1 3.2 3 0 0 3 3 3 1 AAA domain TsaE PF02367.17 gi|385805260|ref|YP_005841658.1| - 0.00025 21.0 1.2 0.51 10.4 0.0 2.9 3 0 0 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|385805260|ref|YP_005841658.1| - 0.00037 20.0 0.2 0.038 13.5 0.0 2.6 2 0 0 2 2 2 1 P-loop containing dynein motor region NACHT PF05729.12 gi|385805260|ref|YP_005841658.1| - 0.00099 19.1 3.1 0.15 12.0 0.1 3.2 3 0 0 3 3 3 1 NACHT domain PIF1 PF05970.14 gi|385805260|ref|YP_005841658.1| - 0.0011 18.3 0.1 1.2 8.2 0.0 2.5 2 0 0 2 2 2 2 PIF1-like helicase AAA_25 PF13481.6 gi|385805260|ref|YP_005841658.1| - 0.0011 18.5 0.3 0.32 10.5 0.0 2.7 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|385805260|ref|YP_005841658.1| - 0.0022 17.3 0.1 0.6 9.4 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|385805260|ref|YP_005841658.1| - 0.0026 17.9 1.3 0.59 10.3 0.1 2.7 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|385805260|ref|YP_005841658.1| - 0.0026 17.4 1.0 0.4 10.3 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|385805260|ref|YP_005841658.1| - 0.0046 16.7 0.2 1.3 8.8 0.1 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SbcCD_C PF13558.6 gi|385805260|ref|YP_005841658.1| - 0.0053 17.0 0.3 4.3 7.6 0.0 3.7 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PhoH PF02562.16 gi|385805260|ref|YP_005841658.1| - 0.0068 15.9 0.1 0.28 10.6 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_11 PF13086.6 gi|385805260|ref|YP_005841658.1| - 0.0071 16.2 0.1 2.5 7.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|385805260|ref|YP_005841658.1| - 0.0072 16.4 2.6 1.9 8.5 0.6 3.9 3 1 0 3 3 3 1 AAA domain SRPRB PF09439.10 gi|385805260|ref|YP_005841658.1| - 0.0077 15.7 0.2 4.3 6.7 0.1 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit dNK PF01712.19 gi|385805260|ref|YP_005841658.1| - 0.0086 16.0 0.0 5.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_19 PF13245.6 gi|385805260|ref|YP_005841658.1| - 0.0089 16.4 0.7 2.7 8.3 0.1 2.7 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|385805260|ref|YP_005841658.1| - 0.0092 16.4 0.1 3.8 7.9 0.0 2.6 2 0 0 2 2 2 0 RNA helicase ResIII PF04851.15 gi|385805260|ref|YP_005841658.1| - 0.013 15.5 0.1 2.4 8.2 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.26 gi|385805260|ref|YP_005841658.1| - 0.022 14.4 0.0 3 7.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.18 gi|385805260|ref|YP_005841658.1| - 0.027 13.8 0.3 2.2 7.6 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family G-alpha PF00503.20 gi|385805260|ref|YP_005841658.1| - 0.033 13.4 0.2 2.9 7.0 0.0 2.5 2 0 0 2 2 2 0 G-protein alpha subunit KAP_NTPase PF07693.14 gi|385805260|ref|YP_005841658.1| - 0.033 13.4 0.1 1.1 8.5 0.0 2.7 3 0 0 3 3 3 0 KAP family P-loop domain Dynamin_N PF00350.23 gi|385805260|ref|YP_005841658.1| - 0.041 13.9 0.1 3.5 7.7 0.0 2.3 2 0 0 2 2 2 0 Dynamin family Roc PF08477.13 gi|385805260|ref|YP_005841658.1| - 0.051 13.8 1.0 1 9.6 0.1 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_27 PF13514.6 gi|385805260|ref|YP_005841658.1| - 0.085 12.4 0.2 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|385805260|ref|YP_005841658.1| - 0.088 12.2 1.0 4.5 6.7 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_28 PF13521.6 gi|385805260|ref|YP_005841658.1| - 0.098 12.9 1.7 10 6.3 0.1 2.4 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|385805260|ref|YP_005841658.1| - 0.098 12.4 0.2 16 5.2 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain MMR_HSR1 PF01926.23 gi|385805260|ref|YP_005841658.1| - 0.14 12.3 5.2 0.37 10.9 0.5 3.0 4 0 0 4 4 2 0 50S ribosome-binding GTPase DEAD PF00270.29 gi|385805260|ref|YP_005841658.1| - 0.14 11.9 0.2 20 4.9 0.0 3.1 3 1 0 3 3 3 0 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|385805260|ref|YP_005841658.1| - 0.14 11.9 1.6 7.4 6.3 0.0 3.3 4 0 0 4 4 3 0 IstB-like ATP binding protein DLIC PF05783.11 gi|385805260|ref|YP_005841658.1| - 0.14 10.9 0.3 2.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) cobW PF02492.19 gi|385805260|ref|YP_005841658.1| - 0.14 11.7 2.9 3 7.4 0.3 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.13 gi|385805260|ref|YP_005841658.1| - 0.16 11.1 0.1 1.6 7.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|385805260|ref|YP_005841658.1| - 0.32 10.9 7.5 6.2 6.7 0.1 3.8 4 0 0 4 4 4 0 NTPase Thymidylate_kin PF02223.17 gi|385805260|ref|YP_005841658.1| - 0.39 10.4 2.7 8.9 5.9 0.0 3.6 3 1 0 4 4 4 0 Thymidylate kinase Gtr1_RagA PF04670.12 gi|385805260|ref|YP_005841658.1| - 0.48 9.7 3.2 2.6 7.3 0.1 2.6 3 0 0 3 3 2 0 Gtr1/RagA G protein conserved region AAA_13 PF13166.6 gi|385805260|ref|YP_005841658.1| - 0.65 8.6 2.5 3.2 6.3 0.1 2.7 2 1 1 3 3 3 0 AAA domain ATPase PF06745.13 gi|385805260|ref|YP_005841658.1| - 0.77 9.1 2.8 17 4.7 0.0 3.1 4 0 0 4 4 4 0 KaiC DUF87 PF01935.17 gi|385805260|ref|YP_005841658.1| - 8.8 6.3 7.9 27 4.8 0.1 3.6 4 1 1 5 5 3 0 Helicase HerA, central domain Radical_SAM PF04055.21 gi|385805262|ref|YP_005841660.1| - 5.4e-12 46.4 0.0 7.7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily ABC2_membrane_2 PF12679.7 gi|385805265|ref|YP_005841663.1| - 2.1e-18 66.6 14.8 2.1e-18 66.6 14.8 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF2715 PF10895.8 gi|385805265|ref|YP_005841663.1| - 0.069 12.8 1.7 0.16 11.6 0.9 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2715) ABC2_membrane_5 PF13346.6 gi|385805265|ref|YP_005841663.1| - 0.14 11.7 24.5 0.045 13.3 17.6 2.5 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|385805265|ref|YP_005841663.1| - 0.37 10.7 21.7 0.14 12.1 13.2 3.0 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|385805266|ref|YP_005841664.1| - 7.6e-23 81.5 0.0 2.8e-22 79.7 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385805266|ref|YP_005841664.1| - 2.7e-07 30.7 0.1 0.00012 22.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TRAM PF01938.20 gi|385805266|ref|YP_005841664.1| - 0.068 13.2 1.4 1.6 8.8 0.1 2.9 3 0 0 3 3 3 0 TRAM domain AAA_30 PF13604.6 gi|385805266|ref|YP_005841664.1| - 0.12 12.1 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|385805266|ref|YP_005841664.1| - 0.25 11.8 2.4 0.22 12.0 0.6 1.7 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|385805266|ref|YP_005841664.1| - 0.35 10.3 3.1 1.8 8.0 0.0 2.4 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain Hydantoinase_B PF02538.14 gi|385805267|ref|YP_005841665.1| - 1e-180 601.6 0.1 1.2e-180 601.4 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|385805268|ref|YP_005841666.1| - 9.5e-99 330.3 3.5 2.1e-97 325.9 0.1 3.1 4 0 0 4 4 4 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|385805268|ref|YP_005841666.1| - 1.3e-46 158.6 0.0 3.4e-45 153.9 0.0 2.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region Red1 PF07964.11 gi|385805269|ref|YP_005841667.1| - 0.27 9.4 0.1 0.33 9.2 0.1 1.0 1 0 0 1 1 1 0 Rec10 / Red1 DHDPS PF00701.22 gi|385805270|ref|YP_005841668.1| - 1.5e-69 233.9 0.0 1.7e-69 233.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_C PF01314.18 gi|385805271|ref|YP_005841669.1| - 2.4e-117 392.2 0.0 3e-117 391.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|385805271|ref|YP_005841669.1| - 2.2e-77 259.4 0.1 3.5e-77 258.8 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fe-ADH PF00465.19 gi|385805272|ref|YP_005841670.1| - 5.9e-97 324.7 0.0 6.6e-97 324.6 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|385805272|ref|YP_005841670.1| - 7.7e-17 61.8 0.0 2.3e-07 30.8 0.5 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Lactamase_B PF00753.27 gi|385805274|ref|YP_005841672.1| - 2.2e-20 73.5 0.0 2.7e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385805274|ref|YP_005841672.1| - 6.8e-07 29.0 0.0 9.7e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|385805274|ref|YP_005841672.1| - 1.1e-05 25.1 0.1 0.0052 16.3 0.1 2.1 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily DJ-1_PfpI PF01965.24 gi|385805275|ref|YP_005841673.1| - 3e-50 170.3 0.0 3.3e-50 170.1 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|385805275|ref|YP_005841673.1| - 0.00025 20.7 0.0 0.00033 20.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain ThiJ_like PF17124.5 gi|385805275|ref|YP_005841673.1| - 0.00048 19.9 0.0 0.0049 16.6 0.0 2.3 2 1 1 3 3 3 1 ThiJ/PfpI family-like GATase PF00117.28 gi|385805275|ref|YP_005841673.1| - 0.0037 17.1 0.0 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Catalase_C PF18011.1 gi|385805275|ref|YP_005841673.1| - 0.06 13.0 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 C-terminal domain found in long catalases Peptidase_C26 PF07722.13 gi|385805275|ref|YP_005841673.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 DUF4234 PF14018.6 gi|385805276|ref|YP_005841674.1| - 2.5e-08 33.9 0.4 2.5e-08 33.9 0.4 4.1 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) DUF2207 PF09972.9 gi|385805276|ref|YP_005841674.1| - 0.0069 15.2 4.8 0.015 14.1 0.6 2.2 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) DUF4064 PF13273.6 gi|385805276|ref|YP_005841674.1| - 0.012 15.8 3.9 0.098 12.9 1.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) UcrQ PF02939.16 gi|385805276|ref|YP_005841674.1| - 0.045 13.7 1.3 0.66 9.9 0.0 3.0 3 0 0 3 3 3 0 UcrQ family Virul_fac_BrkB PF03631.15 gi|385805276|ref|YP_005841674.1| - 0.05 13.2 0.5 0.05 13.2 0.5 2.3 3 0 0 3 3 3 0 Virulence factor BrkB DUF4131 PF13567.6 gi|385805276|ref|YP_005841674.1| - 0.68 9.6 2.9 2.4 7.8 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Tetraspanin PF00335.20 gi|385805276|ref|YP_005841674.1| - 0.7 9.6 5.1 0.56 9.9 1.2 2.4 3 0 0 3 3 3 0 Tetraspanin family DUF973 PF06157.11 gi|385805276|ref|YP_005841674.1| - 0.89 8.5 14.6 0.78 8.7 0.8 2.5 2 1 0 3 3 3 0 Protein of unknown function (DUF973) DUF3611 PF12263.8 gi|385805276|ref|YP_005841674.1| - 1.4 8.8 6.1 0.87 9.5 0.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3611) DUF2418 PF10332.9 gi|385805276|ref|YP_005841674.1| - 1.4 9.5 5.7 0.47 11.0 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2418) UPF0242 PF06785.11 gi|385805276|ref|YP_005841674.1| - 3.2 7.8 11.2 0.048 13.8 2.7 2.3 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus SCAMP PF04144.13 gi|385805277|ref|YP_005841675.1| - 0.12 12.6 5.5 1.5 9.1 5.5 1.9 1 1 0 1 1 1 0 SCAMP family EI24 PF07264.11 gi|385805277|ref|YP_005841675.1| - 0.19 12.0 9.5 0.28 11.4 9.5 1.3 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF2530 PF10745.9 gi|385805277|ref|YP_005841675.1| - 0.21 11.8 1.5 0.32 11.3 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) DUF4870 PF09685.10 gi|385805277|ref|YP_005841675.1| - 1 9.5 8.0 1.8 8.7 8.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4870) TruD PF01142.18 gi|385805280|ref|YP_005841678.1| - 2.4e-21 76.0 0.2 1.9e-17 63.2 0.0 3.0 3 0 0 3 3 3 3 tRNA pseudouridine synthase D (TruD) IF-2B PF01008.17 gi|385805281|ref|YP_005841679.1| - 0.00053 19.3 0.1 0.00058 19.2 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family AmiS_UreI PF02293.15 gi|385805282|ref|YP_005841680.1| - 2.6e-09 37.3 24.5 3.3e-08 33.7 24.5 1.9 1 1 0 1 1 1 1 AmiS/UreI family transporter DUF4668 PF15701.5 gi|385805282|ref|YP_005841680.1| - 0.27 11.1 5.8 0.65 9.8 5.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4668) Trp_oprn_chp PF09534.10 gi|385805282|ref|YP_005841680.1| - 1.6 8.5 10.1 0.11 12.3 1.3 2.3 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Rhomboid PF01694.22 gi|385805283|ref|YP_005841681.1| - 2.5e-34 118.5 18.2 2.5e-34 118.5 18.2 1.4 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|385805283|ref|YP_005841681.1| - 7e-07 29.7 1.4 7e-07 29.7 1.4 2.8 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) CcmH PF03918.14 gi|385805283|ref|YP_005841681.1| - 1.1 8.5 3.2 2.2 7.6 3.2 1.4 1 0 0 1 1 1 0 Cytochrome C biogenesis protein SLATT_1 PF18181.1 gi|385805283|ref|YP_005841681.1| - 3.2 7.7 4.3 8 6.4 4.3 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 CTP-dep_RFKase PF01982.16 gi|385805284|ref|YP_005841682.1| - 2.4e-39 134.2 0.0 3.5e-39 133.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.6 gi|385805284|ref|YP_005841682.1| - 6.1e-08 32.1 0.5 1.4e-07 30.9 0.5 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|385805284|ref|YP_005841682.1| - 6.5e-07 29.1 0.1 1.1e-06 28.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|385805284|ref|YP_005841682.1| - 1.1e-06 28.4 0.9 2.1e-06 27.6 0.2 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|385805284|ref|YP_005841682.1| - 9.2e-06 25.5 0.4 1.7e-05 24.7 0.4 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|385805284|ref|YP_005841682.1| - 0.00013 21.8 0.2 0.00022 21.0 0.2 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|385805284|ref|YP_005841682.1| - 0.00044 20.1 0.0 0.00088 19.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_3 PF01381.22 gi|385805284|ref|YP_005841682.1| - 0.00046 20.2 0.5 0.0011 19.0 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_45 PF14947.6 gi|385805284|ref|YP_005841682.1| - 0.0018 18.3 0.1 0.0031 17.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|385805284|ref|YP_005841682.1| - 0.0034 17.3 0.4 0.0069 16.3 0.4 1.5 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|385805284|ref|YP_005841682.1| - 0.0035 17.3 0.2 0.006 16.5 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|385805284|ref|YP_005841682.1| - 0.0036 17.4 0.1 0.0077 16.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|385805284|ref|YP_005841682.1| - 0.0039 17.0 0.2 0.0057 16.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|385805284|ref|YP_005841682.1| - 0.0064 17.0 0.3 0.015 15.8 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|385805284|ref|YP_005841682.1| - 0.0073 16.6 0.1 0.012 15.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_CodY PF08222.11 gi|385805284|ref|YP_005841682.1| - 0.014 14.9 0.2 0.028 14.0 0.2 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain RQC PF09382.10 gi|385805284|ref|YP_005841682.1| - 0.015 15.1 0.1 0.035 13.9 0.1 1.8 1 1 0 1 1 1 0 RQC domain Cdc6_C PF09079.11 gi|385805284|ref|YP_005841682.1| - 0.016 15.2 0.1 0.031 14.2 0.1 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DDRGK PF09756.9 gi|385805284|ref|YP_005841682.1| - 0.019 14.6 0.3 0.027 14.1 0.3 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_IclR PF09339.10 gi|385805284|ref|YP_005841682.1| - 0.061 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|385805284|ref|YP_005841682.1| - 0.066 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|385805284|ref|YP_005841682.1| - 0.067 13.0 0.4 0.25 11.1 0.1 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|385805284|ref|YP_005841682.1| - 0.068 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain RPA_C PF08784.11 gi|385805284|ref|YP_005841682.1| - 0.081 13.6 0.1 0.13 12.9 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_AsnC-type PF13404.6 gi|385805284|ref|YP_005841682.1| - 0.083 12.7 0.1 0.18 11.7 0.1 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|385805284|ref|YP_005841682.1| - 0.086 12.9 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|385805284|ref|YP_005841682.1| - 0.2 11.6 0.4 0.49 10.4 0.4 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Endonuclease_5 PF04493.14 gi|385805285|ref|YP_005841683.1| - 2.1e-43 148.3 0.0 2.7e-43 148.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V Proteasome PF00227.26 gi|385805286|ref|YP_005841684.1| - 1.2e-47 161.8 0.4 1.4e-47 161.7 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1192 PF06698.11 gi|385805286|ref|YP_005841684.1| - 0.16 12.1 0.1 0.28 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF4216 PF13952.6 gi|385805286|ref|YP_005841684.1| - 0.19 12.2 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4216) Gp_dh_C PF02800.20 gi|385805287|ref|YP_005841685.1| - 2.6e-13 49.8 0.0 5.9e-13 48.7 0.0 1.6 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|385805287|ref|YP_005841685.1| - 1.4e-07 31.6 4.0 2.3e-07 31.0 2.8 2.0 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|385805287|ref|YP_005841685.1| - 0.0012 19.2 1.0 0.01 16.1 1.0 2.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385805287|ref|YP_005841685.1| - 0.0019 17.6 1.3 0.41 10.0 0.1 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|385805287|ref|YP_005841685.1| - 0.0056 17.5 0.0 0.012 16.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|385805287|ref|YP_005841685.1| - 0.0097 16.2 0.6 0.021 15.1 0.6 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|385805287|ref|YP_005841685.1| - 0.039 13.5 1.0 0.11 12.1 1.0 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_3 PF03447.16 gi|385805287|ref|YP_005841685.1| - 0.059 14.0 1.0 0.25 12.0 1.0 2.0 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|385805287|ref|YP_005841685.1| - 0.24 11.7 1.7 0.24 11.7 0.4 1.7 2 0 0 2 2 2 0 TrkA-N domain SopA PF13981.6 gi|385805288|ref|YP_005841686.1| - 0.0031 17.9 0.1 0.0075 16.7 0.1 1.6 1 0 0 1 1 1 1 SopA-like central domain PNP_UDP_1 PF01048.20 gi|385805289|ref|YP_005841687.1| - 1.2e-50 172.0 0.0 1.3e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pribosyltran PF00156.27 gi|385805290|ref|YP_005841688.1| - 7e-18 64.6 0.0 1e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385805290|ref|YP_005841688.1| - 0.00031 20.3 0.1 0.00042 19.8 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase BPL_C PF02237.17 gi|385805291|ref|YP_005841689.1| - 1.2e-12 47.5 0.2 1.2e-12 47.5 0.2 2.1 3 0 0 3 3 3 1 Biotin protein ligase C terminal domain BPL_LplA_LipB PF03099.19 gi|385805291|ref|YP_005841689.1| - 4.1e-12 46.2 0.0 6.8e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family TrmB PF01978.19 gi|385805291|ref|YP_005841689.1| - 0.00057 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|385805291|ref|YP_005841689.1| - 0.00079 19.2 0.0 0.003 17.4 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|385805291|ref|YP_005841689.1| - 0.014 14.9 0.0 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|385805291|ref|YP_005841689.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|385805291|ref|YP_005841689.1| - 0.17 12.1 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|385805291|ref|YP_005841689.1| - 0.2 11.8 0.0 0.42 10.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MJ1316 PF04457.12 gi|385805292|ref|YP_005841690.1| - 1.7e-12 47.9 0.0 1.9e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain DUF5314 PF17241.2 gi|385805293|ref|YP_005841691.1| - 0.014 15.0 0.3 0.046 13.4 0.0 1.9 2 1 0 2 2 2 0 Family of unknown function (DUF5314) CpXC PF14353.6 gi|385805293|ref|YP_005841691.1| - 0.12 12.4 1.1 1.2 9.2 0.0 2.8 2 1 1 3 3 3 0 CpXC protein DNA_RNApol_7kD PF03604.13 gi|385805293|ref|YP_005841691.1| - 0.16 11.7 0.3 0.16 11.7 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Radical_SAM PF04055.21 gi|385805294|ref|YP_005841692.1| - 7.2e-17 62.3 0.9 2.2e-16 60.7 0.0 2.1 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|385805294|ref|YP_005841692.1| - 0.00031 21.0 0.0 0.00066 20.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|385805294|ref|YP_005841692.1| - 0.0039 16.5 3.1 0.17 11.3 0.1 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|385805294|ref|YP_005841692.1| - 0.067 13.2 0.2 0.067 13.2 0.2 2.7 3 0 0 3 3 3 0 Double zinc ribbon zf-BED PF02892.15 gi|385805294|ref|YP_005841692.1| - 8.4 6.5 9.7 6.1 7.0 1.0 3.4 3 0 0 3 3 3 0 BED zinc finger ATP_bind_1 PF03029.17 gi|385805295|ref|YP_005841693.1| - 4.6e-60 203.4 0.0 5.3e-60 203.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|385805295|ref|YP_005841693.1| - 0.00021 21.2 0.0 0.46 10.4 0.0 3.1 3 0 0 3 3 3 1 RsgA GTPase PduV-EutP PF10662.9 gi|385805295|ref|YP_005841693.1| - 0.00056 19.7 0.0 0.063 13.0 0.0 2.7 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|385805295|ref|YP_005841693.1| - 0.00083 18.9 0.0 0.093 12.3 0.0 2.5 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|385805295|ref|YP_005841693.1| - 0.00092 19.5 0.0 0.0039 17.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|385805295|ref|YP_005841693.1| - 0.0016 17.7 0.0 0.0037 16.5 0.0 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_16 PF13191.6 gi|385805295|ref|YP_005841693.1| - 0.0018 18.7 0.0 0.0072 16.7 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain MMR_HSR1_Xtn PF16897.5 gi|385805295|ref|YP_005841693.1| - 0.0056 16.7 0.0 0.97 9.5 0.0 2.4 1 1 1 2 2 2 1 C-terminal region of MMR_HSR1 domain SRP54 PF00448.22 gi|385805295|ref|YP_005841693.1| - 0.014 15.1 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|385805295|ref|YP_005841693.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NBD94 PF16830.5 gi|385805295|ref|YP_005841693.1| - 0.017 15.5 0.2 0.92 9.9 0.0 2.7 3 0 0 3 3 2 0 Nucleotide-Binding Domain 94 of RH Gtr1_RagA PF04670.12 gi|385805295|ref|YP_005841693.1| - 0.018 14.4 0.0 0.067 12.5 0.0 2.0 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region CbiA PF01656.23 gi|385805295|ref|YP_005841693.1| - 0.024 14.7 0.0 0.028 14.5 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|385805295|ref|YP_005841693.1| - 0.032 14.3 0.0 0.44 10.7 0.0 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|385805295|ref|YP_005841693.1| - 0.051 14.1 0.0 0.092 13.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter PRK PF00485.18 gi|385805295|ref|YP_005841693.1| - 0.054 13.2 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_31 PF13614.6 gi|385805295|ref|YP_005841693.1| - 0.057 13.3 0.4 5.1 7.0 0.0 2.9 3 1 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|385805295|ref|YP_005841693.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|385805295|ref|YP_005841693.1| - 0.075 13.3 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|385805295|ref|YP_005841693.1| - 0.078 12.7 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385805295|ref|YP_005841693.1| - 0.091 12.9 0.0 0.29 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|385805295|ref|YP_005841693.1| - 0.099 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|385805295|ref|YP_005841693.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385805295|ref|YP_005841693.1| - 0.14 11.4 0.0 0.73 9.0 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain FeoB_N PF02421.18 gi|385805295|ref|YP_005841693.1| - 0.15 11.6 0.0 3.8 7.0 0.0 2.7 3 0 0 3 3 3 0 Ferrous iron transport protein B Polyoma_lg_T_C PF06431.11 gi|385805295|ref|YP_005841693.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus PhoH PF02562.16 gi|385805295|ref|YP_005841693.1| - 0.17 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Thymidylate_kin PF02223.17 gi|385805295|ref|YP_005841693.1| - 0.17 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase Ribosomal_L18p PF00861.22 gi|385805295|ref|YP_005841693.1| - 0.22 11.9 0.0 0.56 10.6 0.0 1.7 2 0 0 2 2 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SprT-like PF10263.9 gi|385805296|ref|YP_005841694.1| - 0.014 15.2 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Peptidase_M48 PF01435.18 gi|385805296|ref|YP_005841694.1| - 0.031 14.1 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M48 BSP PF04450.12 gi|385805296|ref|YP_005841694.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase of plants and bacteria polyprenyl_synt PF00348.17 gi|385805297|ref|YP_005841695.1| - 9.1e-38 129.8 0.1 1.3e-37 129.3 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase NAD_binding_8 PF13450.6 gi|385805298|ref|YP_005841696.1| - 0.00011 22.4 0.1 0.0002 21.5 0.1 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|385805298|ref|YP_005841696.1| - 0.0016 17.7 0.0 0.0033 16.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|385805298|ref|YP_005841696.1| - 0.0037 16.6 0.0 0.0068 15.7 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385805298|ref|YP_005841696.1| - 0.0051 16.4 0.0 0.02 14.5 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|385805298|ref|YP_005841696.1| - 0.083 12.1 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|385805298|ref|YP_005841696.1| - 0.086 11.9 0.0 0.23 10.5 0.0 1.9 1 1 0 1 1 1 0 Glucose inhibited division protein A CxxCxxCC PF03692.15 gi|385805299|ref|YP_005841697.1| - 7.8e-10 39.3 0.2 1.2e-09 38.7 0.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF4423 PF14394.6 gi|385805300|ref|YP_005841698.1| - 0.02 14.6 0.1 0.031 14.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) tRNA_synthFbeta PF17759.1 gi|385805301|ref|YP_005841699.1| - 5.5e-31 107.7 0.0 7.9e-31 107.2 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|385805301|ref|YP_005841699.1| - 2.2e-22 79.1 3.3 2.4e-17 63.0 0.4 3.4 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|385805301|ref|YP_005841699.1| - 8.7e-12 45.1 0.1 1.6e-11 44.2 0.1 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|385805301|ref|YP_005841699.1| - 4.3e-08 33.3 1.0 3.2e-05 24.1 0.0 3.4 2 1 0 2 2 2 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|385805302|ref|YP_005841700.1| - 2.4e-78 263.0 0.1 3.8e-78 262.3 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|385805302|ref|YP_005841700.1| - 3e-08 33.4 0.0 4.3e-07 29.6 0.0 2.2 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain TrmB PF01978.19 gi|385805302|ref|YP_005841700.1| - 1.1e-06 28.4 0.5 1.1e-06 28.4 0.5 2.5 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB tRNA-synt_2 PF00152.20 gi|385805302|ref|YP_005841700.1| - 3.6e-06 26.3 0.2 0.028 13.5 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|385805302|ref|YP_005841700.1| - 0.0005 19.9 0.1 0.0036 17.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|385805302|ref|YP_005841700.1| - 0.014 15.3 5.0 0.017 15.1 0.0 3.1 3 0 0 3 3 3 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|385805302|ref|YP_005841700.1| - 0.017 14.8 1.5 0.036 13.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|385805302|ref|YP_005841700.1| - 0.058 13.0 0.0 0.058 13.0 0.0 3.3 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding PheRS_DBD3 PF18553.1 gi|385805302|ref|YP_005841700.1| - 0.083 13.2 1.6 0.14 12.5 0.1 2.2 2 0 0 2 2 2 0 PheRS DNA binding domain 3 RQC PF09382.10 gi|385805302|ref|YP_005841700.1| - 0.087 12.6 3.1 0.3 10.9 0.0 2.9 2 1 1 3 3 3 0 RQC domain Rrf2 PF02082.20 gi|385805302|ref|YP_005841700.1| - 0.097 13.0 0.2 0.48 10.8 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_6 PF01418.17 gi|385805302|ref|YP_005841700.1| - 0.18 11.8 1.3 0.35 10.9 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family GFO_IDH_MocA PF01408.22 gi|385805303|ref|YP_005841701.1| - 4.7e-18 66.1 0.0 7.4e-18 65.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|385805303|ref|YP_005841701.1| - 8.7e-05 23.0 0.0 0.00015 22.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain G6PD_N PF00479.22 gi|385805303|ref|YP_005841701.1| - 0.00055 20.6 0.1 0.00087 20.0 0.1 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|385805303|ref|YP_005841701.1| - 0.0015 19.1 0.0 0.0034 17.9 0.0 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|385805303|ref|YP_005841701.1| - 0.03 15.0 0.0 0.058 14.1 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA_C PF02894.17 gi|385805303|ref|YP_005841701.1| - 0.063 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Aldo_ket_red PF00248.21 gi|385805304|ref|YP_005841702.1| - 1.3e-60 205.2 0.0 1.5e-60 204.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Phos_pyr_kin PF08543.12 gi|385805305|ref|YP_005841703.1| - 5.6e-96 320.7 3.1 7.2e-96 320.3 3.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|385805305|ref|YP_005841703.1| - 4.9e-58 195.4 0.8 9.3e-57 191.2 0.0 2.6 3 0 0 3 3 3 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|385805305|ref|YP_005841703.1| - 8e-11 41.8 0.5 2.3e-10 40.3 0.5 1.6 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|385805305|ref|YP_005841703.1| - 0.00077 19.0 1.8 0.0012 18.3 1.8 1.3 1 0 0 1 1 1 1 Carbohydrate kinase Lactamase_B_3 PF13483.6 gi|385805306|ref|YP_005841704.1| - 1.7e-35 122.3 0.0 2.1e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|385805306|ref|YP_005841704.1| - 2.5e-10 40.2 0.0 0.0004 19.9 0.0 2.2 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385805306|ref|YP_005841704.1| - 0.022 14.8 0.7 0.13 12.3 1.1 2.0 2 1 0 2 2 2 0 Metallo-beta-lactamase superfamily RHH_1 PF01402.21 gi|385805307|ref|YP_005841705.1| - 2.7e-11 43.0 0.3 3.8e-11 42.5 0.3 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|385805307|ref|YP_005841705.1| - 4.1e-07 29.9 0.7 5.1e-07 29.6 0.7 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_8 PF17723.1 gi|385805307|ref|YP_005841705.1| - 0.0021 18.2 0.0 0.0022 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family Condensation PF00668.20 gi|385805307|ref|YP_005841705.1| - 0.0023 16.7 0.0 0.0025 16.6 0.0 1.0 1 0 0 1 1 1 1 Condensation domain CopG_antitoxin PF12441.8 gi|385805307|ref|YP_005841705.1| - 0.0086 16.6 0.1 0.011 16.2 0.1 1.2 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system HicB_lk_antitox PF15919.5 gi|385805307|ref|YP_005841705.1| - 0.042 14.0 0.0 0.072 13.2 0.0 1.4 1 1 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system PSK_trans_fac PF07704.11 gi|385805307|ref|YP_005841705.1| - 0.064 14.0 0.1 0.072 13.9 0.1 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor Noelin-1 PF12308.8 gi|385805308|ref|YP_005841706.1| - 0.00036 20.5 1.8 0.0023 17.9 1.9 2.1 1 1 1 2 2 2 1 Neurogenesis glycoprotein BLOC1_2 PF10046.9 gi|385805308|ref|YP_005841706.1| - 0.00082 19.6 6.2 0.00082 19.6 6.2 1.6 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 TRAF_BIRC3_bd PF16673.5 gi|385805308|ref|YP_005841706.1| - 0.0024 17.6 7.1 0.021 14.6 0.8 2.5 1 1 1 2 2 2 1 TNF receptor-associated factor BIRC3 binding domain FPP PF05911.11 gi|385805308|ref|YP_005841706.1| - 0.0028 16.0 5.0 0.0029 15.9 5.0 1.0 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil DUF4927 PF16279.5 gi|385805308|ref|YP_005841706.1| - 0.0035 18.3 3.0 0.0055 17.7 3.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4927) CopG_antitoxin PF12441.8 gi|385805308|ref|YP_005841706.1| - 0.0038 17.7 0.4 0.044 14.3 0.0 2.3 2 1 0 2 2 2 1 CopG antitoxin of type II toxin-antitoxin system Med2 PF11214.8 gi|385805308|ref|YP_005841706.1| - 0.0047 17.1 2.2 0.008 16.3 2.2 1.4 1 0 0 1 1 1 1 Mediator complex subunit 2 Lebercilin PF15619.6 gi|385805308|ref|YP_005841706.1| - 0.0069 16.1 9.0 0.0083 15.8 8.9 1.2 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease RHH_3 PF12651.7 gi|385805308|ref|YP_005841706.1| - 0.0084 16.1 0.8 0.07 13.1 0.1 2.5 2 0 0 2 2 2 1 Ribbon-helix-helix domain Spc7 PF08317.11 gi|385805308|ref|YP_005841706.1| - 0.0099 14.8 7.1 0.019 13.9 6.6 1.6 1 1 1 2 2 2 1 Spc7 kinetochore protein Spc29 PF17082.5 gi|385805308|ref|YP_005841706.1| - 0.013 15.4 2.1 0.016 15.0 2.1 1.2 1 0 0 1 1 1 0 Spindle Pole Component 29 Laminin_II PF06009.12 gi|385805308|ref|YP_005841706.1| - 0.024 14.6 2.6 0.037 14.1 2.6 1.3 1 0 0 1 1 1 0 Laminin Domain II RFX5_N PF18326.1 gi|385805308|ref|YP_005841706.1| - 0.051 13.3 0.2 0.13 12.1 0.2 1.7 1 0 0 1 1 1 0 RFX5 N-terminal domain NPV_P10 PF05531.12 gi|385805308|ref|YP_005841706.1| - 0.07 13.6 4.1 0.77 10.3 4.1 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein RHH_4 PF13467.6 gi|385805308|ref|YP_005841706.1| - 0.12 12.3 0.1 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF4031 PF13223.6 gi|385805308|ref|YP_005841706.1| - 0.18 12.1 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) Fib_alpha PF08702.10 gi|385805308|ref|YP_005841706.1| - 0.19 11.9 5.2 0.28 11.4 5.2 1.4 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|385805308|ref|YP_005841706.1| - 0.2 11.7 7.4 0.79 9.8 7.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Allexi_40kDa PF05549.11 gi|385805308|ref|YP_005841706.1| - 0.23 11.0 1.8 0.25 10.8 1.8 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein Cob_adeno_trans PF01923.18 gi|385805308|ref|YP_005841706.1| - 0.28 11.3 3.2 0.6 10.2 3.2 1.6 1 1 0 1 1 1 0 Cobalamin adenosyltransferase AKNA PF12443.8 gi|385805308|ref|YP_005841706.1| - 0.34 11.6 4.6 1.2 9.8 0.3 2.3 1 1 1 2 2 2 0 AT-hook-containing transcription factor FlxA PF14282.6 gi|385805308|ref|YP_005841706.1| - 0.61 10.1 9.7 1.4 9.0 7.1 2.1 1 1 1 2 2 2 0 FlxA-like protein MtrG PF04210.13 gi|385805308|ref|YP_005841706.1| - 0.8 9.6 4.1 0.64 9.9 0.8 2.4 1 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Histone_HNS PF00816.21 gi|385805308|ref|YP_005841706.1| - 0.9 10.4 5.4 5.6 7.9 0.0 2.5 1 1 1 2 2 2 0 H-NS histone family DASH_Dam1 PF08653.10 gi|385805308|ref|YP_005841706.1| - 0.93 9.3 3.1 3.7 7.4 0.4 2.5 1 1 1 2 2 2 0 DASH complex subunit Dam1 SlyX PF04102.12 gi|385805308|ref|YP_005841706.1| - 1.7 9.3 11.6 23 5.7 10.0 2.6 2 1 0 2 2 2 0 SlyX DUF848 PF05852.11 gi|385805308|ref|YP_005841706.1| - 1.7 8.7 9.0 1.7 8.7 7.5 1.7 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) FlaC_arch PF05377.11 gi|385805308|ref|YP_005841706.1| - 1.7 9.1 11.1 7.3 7.1 4.4 2.9 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|385805308|ref|YP_005841706.1| - 1.7 9.1 9.0 19 5.8 9.0 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 XhlA PF10779.9 gi|385805308|ref|YP_005841706.1| - 1.9 8.7 10.8 3.2 8.0 4.7 2.6 2 1 1 3 3 3 0 Haemolysin XhlA Swi5 PF07061.11 gi|385805308|ref|YP_005841706.1| - 2.6 8.2 9.6 5.2 7.2 0.6 2.9 2 1 1 3 3 3 0 Swi5 eIF-4B PF06273.11 gi|385805308|ref|YP_005841706.1| - 3.7 6.5 5.2 4.2 6.3 5.2 1.0 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B BRI3BP PF14965.6 gi|385805308|ref|YP_005841706.1| - 3.8 7.0 4.3 23 4.4 0.4 2.2 1 1 1 2 2 2 0 Negative regulator of p53/TP53 Osmo_CC PF08946.10 gi|385805308|ref|YP_005841706.1| - 6.1 7.2 10.9 1.2 9.5 2.3 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil PspB PF06667.12 gi|385805308|ref|YP_005841706.1| - 6.4 6.9 8.7 13 5.9 1.4 2.6 1 1 2 3 3 3 0 Phage shock protein B ABC_tran PF00005.27 gi|385805309|ref|YP_005841707.1| - 6.5e-26 91.5 0.0 2.4e-25 89.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385805309|ref|YP_005841707.1| - 2.9e-11 43.7 1.2 2.9e-05 24.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|385805309|ref|YP_005841707.1| - 3.3e-05 23.8 0.1 0.0094 15.7 0.6 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|385805309|ref|YP_005841707.1| - 0.0019 17.9 0.3 0.0043 16.8 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385805309|ref|YP_005841707.1| - 0.0036 17.8 0.9 0.0069 16.9 0.9 1.4 1 0 0 1 1 1 1 AAA domain MukB PF04310.12 gi|385805309|ref|YP_005841707.1| - 0.011 15.5 0.1 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 MukB N-terminal TsaE PF02367.17 gi|385805309|ref|YP_005841707.1| - 0.013 15.5 0.1 0.029 14.4 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|385805309|ref|YP_005841707.1| - 0.043 13.7 0.2 0.1 12.5 0.2 1.6 1 0 0 1 1 1 0 NACHT domain Roc PF08477.13 gi|385805309|ref|YP_005841707.1| - 0.048 13.9 0.2 1 9.6 0.0 2.6 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|385805309|ref|YP_005841707.1| - 0.053 13.6 0.4 8 6.5 0.1 2.6 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|385805309|ref|YP_005841707.1| - 0.066 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|385805309|ref|YP_005841707.1| - 0.07 12.4 0.0 0.16 11.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|385805309|ref|YP_005841707.1| - 0.074 13.5 0.1 0.59 10.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|385805309|ref|YP_005841707.1| - 0.094 12.1 0.0 4.5 6.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|385805309|ref|YP_005841707.1| - 0.1 12.3 0.4 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|385805309|ref|YP_005841707.1| - 0.13 12.5 0.6 0.76 10.1 0.1 2.2 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|385805309|ref|YP_005841707.1| - 0.15 11.8 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|385805309|ref|YP_005841707.1| - 0.28 11.0 1.8 6.1 6.6 0.0 2.6 3 0 0 3 3 2 0 Deoxynucleoside kinase ABC2_membrane_3 PF12698.7 gi|385805310|ref|YP_005841708.1| - 7.1e-09 35.2 32.1 7.9e-09 35.1 32.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|385805310|ref|YP_005841708.1| - 3.3e-06 26.7 26.9 4.7e-06 26.2 26.9 1.2 1 0 0 1 1 1 1 ABC-2 type transporter RVT_3 PF13456.6 gi|385805311|ref|YP_005841709.1| - 2.8e-20 72.4 0.0 3.1e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|385805311|ref|YP_005841709.1| - 1.2e-09 38.5 0.0 1.7e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 RNase H HPD PF05044.12 gi|385805311|ref|YP_005841709.1| - 0.024 14.5 0.2 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 Homeo-prospero domain Fer4_15 PF13459.6 gi|385805313|ref|YP_005841711.1| - 4.7e-15 56.1 1.4 5.6e-15 55.8 1.4 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|385805313|ref|YP_005841711.1| - 1.3e-12 48.0 1.2 1.8e-12 47.6 1.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I OsmC PF02566.19 gi|385805313|ref|YP_005841711.1| - 0.036 14.5 0.1 0.038 14.5 0.1 1.2 1 0 0 1 1 1 0 OsmC-like protein Fer4 PF00037.27 gi|385805313|ref|YP_005841711.1| - 0.04 13.7 2.3 1.7 8.6 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain MarC PF01914.17 gi|385805314|ref|YP_005841712.1| - 1.8e-30 105.9 16.4 2.1e-30 105.6 16.4 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein GATase_6 PF13522.6 gi|385805315|ref|YP_005841713.1| - 2.8e-06 27.6 0.0 7.1e-06 26.2 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|385805315|ref|YP_005841713.1| - 0.12 11.2 0.1 0.27 10.1 0.1 1.5 1 1 0 1 1 1 0 Glutamine amidotransferases class-II Hydrolase_4 PF12146.8 gi|385805316|ref|YP_005841714.1| - 2.3e-10 40.1 0.0 0.00049 19.4 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|385805316|ref|YP_005841714.1| - 8.3e-08 32.2 0.0 0.0061 16.2 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|385805316|ref|YP_005841714.1| - 5.3e-06 26.1 0.0 6.3e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|385805316|ref|YP_005841714.1| - 1.3e-05 25.9 0.0 5.5e-05 23.9 0.0 1.6 1 1 1 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|385805316|ref|YP_005841714.1| - 0.00075 19.3 0.0 0.001 18.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|385805316|ref|YP_005841714.1| - 0.0041 16.8 0.0 0.0066 16.1 0.0 1.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 gi|385805316|ref|YP_005841714.1| - 0.0055 16.8 0.0 0.013 15.6 0.0 1.6 2 0 0 2 2 2 1 TAP-like protein UPF0227 PF05728.12 gi|385805316|ref|YP_005841714.1| - 0.026 14.5 0.0 0.068 13.1 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) Esterase PF00756.20 gi|385805316|ref|YP_005841714.1| - 0.027 14.1 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative esterase Abhydrolase_2 PF02230.16 gi|385805316|ref|YP_005841714.1| - 0.033 14.0 0.0 0.041 13.7 0.0 1.1 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase DUF1057 PF06342.12 gi|385805316|ref|YP_005841714.1| - 0.044 12.8 0.0 0.074 12.1 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) DUF2920 PF11144.8 gi|385805316|ref|YP_005841714.1| - 0.054 12.7 0.0 0.082 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) Peptidase_S9 PF00326.21 gi|385805316|ref|YP_005841714.1| - 0.1 12.1 0.0 4.3 6.8 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family HypA PF01155.19 gi|385805317|ref|YP_005841715.1| - 1.4e-20 73.4 1.2 1.6e-20 73.2 1.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|385805317|ref|YP_005841715.1| - 0.0085 16.1 2.3 0.75 9.8 0.4 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385805317|ref|YP_005841715.1| - 0.01 15.8 1.6 2.4 8.2 0.2 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1 PF03811.13 gi|385805317|ref|YP_005841715.1| - 0.012 15.3 2.5 0.16 11.7 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_4 PF13717.6 gi|385805317|ref|YP_005841715.1| - 0.014 15.3 0.1 8 6.5 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Mut7-C PF01927.16 gi|385805317|ref|YP_005841715.1| - 0.021 14.9 0.1 0.024 14.7 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain TF_Zn_Ribbon PF08271.12 gi|385805317|ref|YP_005841715.1| - 0.022 14.3 0.9 0.41 10.2 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Elf1 PF05129.13 gi|385805317|ref|YP_005841715.1| - 0.046 13.8 1.1 1.9 8.6 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like eIF-5_eIF-2B PF01873.17 gi|385805317|ref|YP_005841715.1| - 0.064 13.1 0.9 1.7 8.5 0.0 2.3 2 1 0 2 2 2 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.11 gi|385805317|ref|YP_005841715.1| - 0.065 13.2 0.1 3.7 7.5 0.0 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|385805317|ref|YP_005841715.1| - 0.07 13.2 1.9 0.56 10.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|385805317|ref|YP_005841715.1| - 0.093 12.6 4.3 0.94 9.4 1.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.6 gi|385805317|ref|YP_005841715.1| - 0.11 12.9 0.5 0.82 10.1 0.8 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|385805317|ref|YP_005841715.1| - 0.15 12.2 3.6 0.83 9.8 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|385805317|ref|YP_005841715.1| - 0.32 10.5 4.4 1.2 8.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|385805317|ref|YP_005841715.1| - 0.44 10.6 2.7 1.5 8.9 1.1 2.3 2 1 1 3 3 2 0 CpXC protein Rubredoxin_2 PF18073.1 gi|385805317|ref|YP_005841715.1| - 2.1 8.2 7.4 3.4 7.5 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ParA PF10609.9 gi|385805318|ref|YP_005841716.1| - 3e-44 151.3 0.1 3.5e-44 151.1 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|385805318|ref|YP_005841716.1| - 1.1e-21 77.2 0.2 1.4e-21 76.9 0.2 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|385805318|ref|YP_005841716.1| - 1.6e-12 47.7 3.6 4.1e-11 43.1 3.6 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|385805318|ref|YP_005841716.1| - 3.5e-08 33.0 1.4 0.00015 21.0 0.0 2.9 2 1 1 3 3 3 2 Anion-transporting ATPase MipZ PF09140.11 gi|385805318|ref|YP_005841716.1| - 6.7e-07 28.9 0.0 1.4e-06 27.8 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|385805318|ref|YP_005841716.1| - 1.7e-05 24.7 1.5 0.011 15.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|385805318|ref|YP_005841716.1| - 0.0034 16.9 0.0 0.011 15.2 0.0 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|385805318|ref|YP_005841716.1| - 0.1 12.4 0.3 0.62 9.8 0.1 2.1 2 1 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop QueT PF06177.11 gi|385805319|ref|YP_005841717.1| - 1.3e-31 109.9 15.2 1.4e-31 109.7 15.2 1.0 1 0 0 1 1 1 1 QueT transporter S1FA PF04689.13 gi|385805319|ref|YP_005841717.1| - 0.71 10.1 3.9 3.4 7.9 1.5 2.5 1 1 1 2 2 2 0 DNA binding protein S1FA ABC_tran PF00005.27 gi|385805320|ref|YP_005841718.1| - 5.7e-22 78.7 0.0 8e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|385805320|ref|YP_005841718.1| - 3.5e-11 42.9 0.1 3.5e-06 26.6 0.0 2.0 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385805320|ref|YP_005841718.1| - 6.3e-07 29.5 1.9 2.8e-05 24.1 0.3 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|385805320|ref|YP_005841718.1| - 3.4e-06 27.7 0.1 9.3e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|385805320|ref|YP_005841718.1| - 3e-05 23.7 0.0 4.8e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|385805320|ref|YP_005841718.1| - 3.2e-05 23.8 0.1 4.4e-05 23.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385805320|ref|YP_005841718.1| - 9.9e-05 22.0 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|385805320|ref|YP_005841718.1| - 0.0012 18.8 0.2 0.0053 16.7 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|385805320|ref|YP_005841718.1| - 0.0017 17.2 0.0 0.0029 16.5 0.0 1.3 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|385805320|ref|YP_005841718.1| - 0.087 13.1 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|385805320|ref|YP_005841718.1| - 0.1 12.6 0.1 0.23 11.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385805320|ref|YP_005841718.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|385805320|ref|YP_005841718.1| - 0.2 12.0 0.0 0.28 11.6 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain T_Ag_DNA_bind PF02217.16 gi|385805321|ref|YP_005841719.1| - 0.04 14.5 0.4 0.079 13.6 0.4 1.6 1 0 0 1 1 1 0 Origin of replication binding protein AA_permease_2 PF13520.6 gi|385805322|ref|YP_005841720.1| - 3.3e-43 148.1 62.2 3.3e-43 148.1 62.2 3.0 1 1 2 3 3 3 1 Amino acid permease AA_permease PF00324.21 gi|385805322|ref|YP_005841720.1| - 9.1e-32 110.3 62.2 9.1e-32 110.3 62.2 2.5 1 1 1 2 2 2 1 Amino acid permease DHO_dh PF01180.21 gi|385805323|ref|YP_005841721.1| - 3e-54 184.2 3.7 3.4e-54 184.1 3.7 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|385805323|ref|YP_005841721.1| - 5e-10 39.0 0.2 4e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|385805323|ref|YP_005841721.1| - 4.2e-06 26.4 0.6 0.0085 15.5 0.0 2.5 2 1 0 3 3 3 2 Nitronate monooxygenase His_biosynth PF00977.21 gi|385805323|ref|YP_005841721.1| - 1e-05 25.2 1.0 0.0023 17.4 0.0 2.9 3 0 0 3 3 3 1 Histidine biosynthesis protein IGPS PF00218.21 gi|385805323|ref|YP_005841721.1| - 0.00056 19.2 0.2 0.024 13.8 0.0 2.3 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|385805323|ref|YP_005841721.1| - 0.0012 17.9 1.5 0.0039 16.3 0.0 2.3 3 0 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|385805323|ref|YP_005841721.1| - 0.0033 16.9 0.7 0.17 11.3 0.1 3.3 3 1 1 4 4 4 1 Glycerol-3-phosphate responsive antiterminator DUF561 PF04481.12 gi|385805323|ref|YP_005841721.1| - 0.0096 15.1 3.4 0.25 10.5 0.5 2.9 1 1 1 3 3 3 1 Protein of unknown function (DUF561) DHDPS PF00701.22 gi|385805323|ref|YP_005841721.1| - 0.052 12.2 0.8 0.29 9.8 0.1 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family DeoC PF01791.9 gi|385805323|ref|YP_005841721.1| - 0.088 12.4 0.0 1.3 8.6 0.0 2.3 3 0 0 3 3 3 0 DeoC/LacD family aldolase Ligase_CoA PF00549.19 gi|385805323|ref|YP_005841721.1| - 0.13 12.1 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 CoA-ligase ThiG PF05690.14 gi|385805323|ref|YP_005841721.1| - 1.3 8.3 3.5 12 5.2 0.0 2.9 1 1 2 3 3 3 0 Thiazole biosynthesis protein ThiG Amidohydro_1 PF01979.20 gi|385805324|ref|YP_005841722.1| - 1.4e-15 57.5 0.0 1.1e-14 54.6 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|385805324|ref|YP_005841722.1| - 1.1e-05 25.1 0.0 0.1 12.1 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family DHODB_Fe-S_bind PF10418.9 gi|385805325|ref|YP_005841723.1| - 6.9e-09 35.4 4.3 6.9e-09 35.4 4.3 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ANAPC4 PF12896.7 gi|385805325|ref|YP_005841723.1| - 0.081 12.4 0.0 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 Fer2_3 PF13085.6 gi|385805325|ref|YP_005841723.1| - 0.93 9.5 9.8 2.1 8.4 5.4 2.4 1 1 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain PyrI PF01948.18 gi|385805326|ref|YP_005841724.1| - 2.6e-34 117.4 2.9 2.6e-34 117.4 2.9 1.6 2 1 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|385805326|ref|YP_005841724.1| - 1.3e-17 63.4 1.3 1.3e-17 63.4 1.3 1.7 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-ACC PF17848.1 gi|385805326|ref|YP_005841724.1| - 0.11 12.6 0.2 0.11 12.6 0.2 1.8 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain OTCace_N PF02729.21 gi|385805327|ref|YP_005841725.1| - 1.6e-44 151.5 0.0 2.3e-44 151.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|385805327|ref|YP_005841725.1| - 5.4e-27 94.8 0.0 3.4e-26 92.2 0.0 2.0 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pribosyltran PF00156.27 gi|385805328|ref|YP_005841726.1| - 6.9e-17 61.4 0.4 9.8e-17 60.9 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|385805328|ref|YP_005841726.1| - 0.00058 19.4 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Mur_ligase_C PF02875.21 gi|385805328|ref|YP_005841726.1| - 0.094 13.0 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain PRTase_2 PF15609.6 gi|385805328|ref|YP_005841726.1| - 0.13 11.7 0.1 0.34 10.4 0.1 1.7 1 1 1 2 2 2 0 Phosphoribosyl transferase OMPdecase PF00215.24 gi|385805329|ref|YP_005841727.1| - 5.8e-22 78.4 0.1 7.4e-22 78.0 0.1 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family FMN_dh PF01070.18 gi|385805329|ref|YP_005841727.1| - 0.0058 15.7 0.3 0.01 14.9 0.2 1.4 2 0 0 2 2 2 1 FMN-dependent dehydrogenase ABC_tran PF00005.27 gi|385805330|ref|YP_005841728.1| - 6.8e-28 97.9 0.0 1.2e-27 97.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385805330|ref|YP_005841728.1| - 4.5e-11 43.1 0.5 0.00027 20.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|385805330|ref|YP_005841728.1| - 0.00019 21.4 0.1 0.00035 20.5 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|385805330|ref|YP_005841728.1| - 0.00038 21.0 0.4 0.00055 20.5 0.4 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385805330|ref|YP_005841728.1| - 0.0011 19.4 0.1 0.015 15.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|385805330|ref|YP_005841728.1| - 0.0013 18.7 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|385805330|ref|YP_005841728.1| - 0.0021 18.5 0.0 0.0026 18.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|385805330|ref|YP_005841728.1| - 0.0028 17.6 0.0 0.0082 16.1 0.0 1.7 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|385805330|ref|YP_005841728.1| - 0.0051 16.5 0.0 0.0098 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|385805330|ref|YP_005841728.1| - 0.0066 16.2 0.4 0.054 13.2 0.2 2.0 1 1 1 2 2 2 1 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|385805330|ref|YP_005841728.1| - 0.012 14.5 0.1 0.016 14.0 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein SMC_N PF02463.19 gi|385805330|ref|YP_005841728.1| - 0.012 15.1 0.5 0.16 11.4 0.2 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|385805330|ref|YP_005841728.1| - 0.017 15.4 0.1 0.048 13.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|385805330|ref|YP_005841728.1| - 0.033 14.3 0.0 0.042 13.9 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|385805330|ref|YP_005841728.1| - 0.053 12.3 0.1 5.4 5.7 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|385805330|ref|YP_005841728.1| - 0.062 13.5 0.1 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|385805330|ref|YP_005841728.1| - 0.073 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|385805330|ref|YP_005841728.1| - 0.21 11.9 0.0 0.41 10.9 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PsbI PF02532.14 gi|385805331|ref|YP_005841729.1| - 0.051 13.5 0.6 0.051 13.5 0.6 1.4 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) MS_channel PF00924.18 gi|385805332|ref|YP_005841730.1| - 6.7e-18 65.0 5.9 6.7e-18 65.0 5.9 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel LSM PF01423.22 gi|385805333|ref|YP_005841731.1| - 1.7e-17 62.9 0.1 2e-17 62.6 0.1 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|385805333|ref|YP_005841731.1| - 0.00023 21.3 0.0 0.00027 21.0 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Lactamase_B PF00753.27 gi|385805334|ref|YP_005841732.1| - 1.3e-05 25.3 0.0 2.9e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385805334|ref|YP_005841732.1| - 0.00029 20.4 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|385805334|ref|YP_005841732.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Herpes_IE2_3 PF03361.14 gi|385805334|ref|YP_005841732.1| - 0.096 12.6 0.3 0.096 12.6 0.3 1.8 2 0 0 2 2 2 0 Herpes virus intermediate/early protein 2/3 DUF1945 PF09178.10 gi|385805334|ref|YP_005841732.1| - 0.11 12.7 0.1 0.26 11.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1945) Methyltransf_25 PF13649.6 gi|385805335|ref|YP_005841733.1| - 1.2e-10 42.0 0.0 2.6e-10 40.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385805335|ref|YP_005841733.1| - 3.1e-10 40.5 0.0 4.9e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805335|ref|YP_005841733.1| - 2.8e-07 30.4 0.3 4.3e-07 29.8 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385805335|ref|YP_005841733.1| - 1.2e-05 24.8 0.5 1.5e-05 24.5 0.5 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|385805335|ref|YP_005841733.1| - 0.0024 17.8 0.0 0.0029 17.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain FbpA PF05833.11 gi|385805336|ref|YP_005841734.1| - 2e-34 119.1 11.7 3.2e-34 118.5 11.7 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|385805336|ref|YP_005841734.1| - 2.1e-22 79.8 0.1 4.7e-22 78.7 0.1 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|385805336|ref|YP_005841734.1| - 5.6e-05 23.3 0.0 0.00021 21.4 0.0 2.0 1 0 0 1 1 1 1 NFACT protein RNA binding domain BLOC1_2 PF10046.9 gi|385805336|ref|YP_005841734.1| - 0.0062 16.8 9.2 0.051 13.9 2.3 3.5 2 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tweety PF04906.13 gi|385805336|ref|YP_005841734.1| - 0.019 13.6 0.4 0.038 12.7 0.1 1.5 2 0 0 2 2 2 0 Tweety Laminin_II PF06009.12 gi|385805336|ref|YP_005841734.1| - 0.028 14.4 1.2 9.3 6.3 0.0 2.5 2 0 0 2 2 2 0 Laminin Domain II DHR10 PF18595.1 gi|385805336|ref|YP_005841734.1| - 0.11 12.6 7.3 0.42 10.7 1.2 2.4 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF5082 PF16888.5 gi|385805336|ref|YP_005841734.1| - 0.21 11.9 9.3 0.18 12.1 2.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) DUF4795 PF16043.5 gi|385805336|ref|YP_005841734.1| - 0.24 11.0 4.9 11 5.6 2.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Tropomyosin_1 PF12718.7 gi|385805336|ref|YP_005841734.1| - 0.37 10.9 13.7 0.72 10.0 5.8 2.5 2 0 0 2 2 2 0 Tropomyosin like Csm1_N PF18504.1 gi|385805336|ref|YP_005841734.1| - 0.84 10.0 8.1 3.2 8.2 2.1 2.6 2 0 0 2 2 2 0 Csm1 N-terminal domain FlaC_arch PF05377.11 gi|385805336|ref|YP_005841734.1| - 1.3 9.5 6.8 4.1 7.9 0.3 3.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) She9_MDM33 PF05546.11 gi|385805336|ref|YP_005841734.1| - 2 8.1 12.4 0.53 10.1 4.0 2.2 2 0 0 2 2 2 0 She9 / Mdm33 family DUF4315 PF14193.6 gi|385805336|ref|YP_005841734.1| - 2.8 8.0 16.4 4 7.5 0.6 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4315) DivIC PF04977.15 gi|385805336|ref|YP_005841734.1| - 3.5 7.5 12.0 2.3 8.1 1.0 2.8 2 0 0 2 2 2 0 Septum formation initiator Spc7 PF08317.11 gi|385805336|ref|YP_005841734.1| - 3.6 6.4 15.1 0.91 8.3 0.9 2.2 1 1 0 2 2 2 0 Spc7 kinetochore protein XhlA PF10779.9 gi|385805336|ref|YP_005841734.1| - 7.8 6.8 13.5 7.2 6.9 0.5 3.7 3 0 0 3 3 3 0 Haemolysin XhlA CBS PF00571.28 gi|385805337|ref|YP_005841735.1| - 8.2e-32 109.4 6.2 8.2e-16 58.2 1.5 2.1 2 0 0 2 2 2 2 CBS domain AhpC-TSA_2 PF13911.6 gi|385805337|ref|YP_005841735.1| - 0.053 13.6 0.0 0.56 10.3 0.0 2.2 1 1 0 2 2 2 0 AhpC/TSA antioxidant enzyme AdoMet_Synthase PF01941.19 gi|385805338|ref|YP_005841736.1| - 2e-169 563.6 3.8 2.3e-169 563.4 3.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF460 PF04312.13 gi|385805339|ref|YP_005841737.1| - 1.4e-44 151.3 0.3 3.3e-44 150.0 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF460) MitMem_reg PF13012.6 gi|385805339|ref|YP_005841737.1| - 0.012 16.1 7.1 0.55 10.7 0.4 4.2 2 1 1 3 3 3 0 Maintenance of mitochondrial structure and function DRTGG PF07085.12 gi|385805339|ref|YP_005841737.1| - 0.026 14.3 0.0 3.3 7.6 0.0 2.6 2 0 0 2 2 2 0 DRTGG domain SlyX PF04102.12 gi|385805339|ref|YP_005841737.1| - 2.2 9.0 7.1 2.8 8.6 0.2 2.9 3 0 0 3 3 3 0 SlyX RIO1 PF01163.22 gi|385805340|ref|YP_005841738.1| - 2.2e-43 148.1 0.5 2.8e-43 147.7 0.5 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|385805340|ref|YP_005841738.1| - 1.4e-16 60.4 0.1 3.6e-16 59.2 0.1 1.7 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|385805340|ref|YP_005841738.1| - 0.00026 21.0 0.2 0.018 14.9 0.1 2.1 2 0 0 2 2 2 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|385805340|ref|YP_005841738.1| - 0.00029 19.7 0.0 0.00034 19.5 0.0 1.1 1 0 0 1 1 1 1 Fungal protein kinase Rrf2 PF02082.20 gi|385805340|ref|YP_005841738.1| - 0.0062 16.8 0.2 0.013 15.8 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulator Pkinase PF00069.25 gi|385805340|ref|YP_005841738.1| - 0.031 13.6 0.1 0.045 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein kinase domain Choline_kinase PF01633.20 gi|385805340|ref|YP_005841738.1| - 0.033 13.8 0.2 1 8.9 0.1 2.1 1 1 1 2 2 2 0 Choline/ethanolamine kinase CBS PF00571.28 gi|385805341|ref|YP_005841739.1| - 4e-33 113.6 1.3 5.5e-12 45.9 0.2 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|385805342|ref|YP_005841740.1| - 8.6e-19 67.7 4.9 3.6e-08 33.7 0.2 4.0 4 0 0 4 4 4 3 CBS domain CBS PF00571.28 gi|385805343|ref|YP_005841741.1| - 6.2e-54 180.3 10.4 2.2e-14 53.6 0.3 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.28 gi|385805344|ref|YP_005841742.1| - 4.8e-33 113.4 7.8 4.2e-10 39.9 0.1 4.2 4 0 0 4 4 4 4 CBS domain Mut7-C PF01927.16 gi|385805345|ref|YP_005841743.1| - 8.4e-33 113.5 0.0 1e-32 113.3 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|385805345|ref|YP_005841743.1| - 1.4e-05 24.8 0.1 2.6e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF188 PF02639.14 gi|385805345|ref|YP_005841743.1| - 0.003 17.2 0.1 0.005 16.5 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 TackOD1 PF18551.1 gi|385805345|ref|YP_005841743.1| - 0.02 14.6 1.1 0.051 13.2 1.1 1.6 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 DUF2197 PF09963.9 gi|385805345|ref|YP_005841743.1| - 0.038 14.2 0.9 0.099 12.9 0.9 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) Ogr_Delta PF04606.12 gi|385805345|ref|YP_005841743.1| - 0.04 13.9 0.1 0.059 13.4 0.1 1.3 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger DUF3268 PF11672.8 gi|385805345|ref|YP_005841743.1| - 0.061 13.6 0.1 0.087 13.1 0.1 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain TF_Zn_Ribbon PF08271.12 gi|385805345|ref|YP_005841743.1| - 0.076 12.5 1.4 0.34 10.5 1.4 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|385805345|ref|YP_005841743.1| - 0.11 12.5 0.4 4.7 7.3 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-RRN7 PF11781.8 gi|385805345|ref|YP_005841743.1| - 0.74 9.6 3.0 7.4 6.4 1.3 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 AMMECR1 PF01871.17 gi|385805346|ref|YP_005841744.1| - 4.8e-47 159.7 0.0 5.5e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DNA_ligase_A_M PF01068.21 gi|385805348|ref|YP_005841746.1| - 1.9e-64 217.1 1.3 2.9e-64 216.5 1.3 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|385805348|ref|YP_005841746.1| - 5.6e-37 127.7 1.4 1.1e-36 126.7 1.4 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|385805348|ref|YP_005841746.1| - 2.4e-22 79.4 0.0 4.8e-22 78.4 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|385805348|ref|YP_005841746.1| - 1.6e-06 28.5 0.4 2.5e-06 27.9 0.4 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|385805348|ref|YP_005841746.1| - 0.011 15.8 0.4 0.19 11.8 0.0 2.8 3 0 0 3 3 3 0 DNA ligase OB-like domain BAR_3 PF16746.5 gi|385805348|ref|YP_005841746.1| - 0.13 12.0 1.5 3.8 7.2 0.0 2.4 2 0 0 2 2 2 0 BAR domain of APPL family DUF3788 PF12663.7 gi|385805349|ref|YP_005841747.1| - 0.011 15.7 1.3 0.015 15.2 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3788) CENP-F_N PF10481.9 gi|385805349|ref|YP_005841747.1| - 0.022 14.4 8.6 0.037 13.7 8.6 1.5 1 1 0 1 1 1 0 Cenp-F N-terminal domain STAT_alpha PF01017.20 gi|385805349|ref|YP_005841747.1| - 0.041 13.8 4.5 0.076 12.9 4.5 1.5 1 1 0 1 1 1 0 STAT protein, all-alpha domain Sec16 PF12932.7 gi|385805349|ref|YP_005841747.1| - 1.3 9.6 4.1 1.2 9.7 2.0 1.9 1 1 1 2 2 2 0 Vesicle coat trafficking protein Sec16 mid-region Lon_C PF05362.13 gi|385805350|ref|YP_005841748.1| - 1.6e-05 24.6 0.0 3.9e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UDG PF03167.19 gi|385805351|ref|YP_005841749.1| - 6e-37 127.0 0.0 7.3e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Glycos_transf_2 PF00535.26 gi|385805352|ref|YP_005841750.1| - 4.2e-33 114.6 0.1 6e-33 114.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|385805352|ref|YP_005841750.1| - 9.2e-27 93.6 11.9 1.5e-26 92.9 11.4 1.6 2 0 0 2 2 2 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|385805352|ref|YP_005841750.1| - 2.2e-12 47.3 0.0 3e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385805352|ref|YP_005841750.1| - 0.001 18.6 0.1 0.0017 17.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 LNS2 PF08235.13 gi|385805352|ref|YP_005841750.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 LNS2 (Lipin/Ned1/Smp2) Glyco_transf_21 PF13506.6 gi|385805352|ref|YP_005841750.1| - 0.019 14.4 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 PEN-2 PF10251.9 gi|385805352|ref|YP_005841750.1| - 0.56 10.7 4.9 0.59 10.6 0.8 2.5 2 1 1 3 3 3 0 Presenilin enhancer-2 subunit of gamma secretase Metallophos PF00149.28 gi|385805353|ref|YP_005841751.1| - 9.8e-07 29.5 0.3 9e-06 26.3 0.0 1.9 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385805353|ref|YP_005841751.1| - 0.0046 17.2 0.0 0.0079 16.4 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Radical_SAM PF04055.21 gi|385805355|ref|YP_005841753.1| - 6e-20 72.3 0.0 8.5e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|385805355|ref|YP_005841753.1| - 0.00071 19.7 0.1 0.0025 17.9 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Methyltransf_25 PF13649.6 gi|385805356|ref|YP_005841754.1| - 7.6e-07 29.8 0.0 1.4e-06 28.9 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain DOT1 PF08123.13 gi|385805356|ref|YP_005841754.1| - 4.9e-06 26.2 0.3 0.00012 21.6 0.1 2.0 1 1 1 2 2 2 1 Histone methylation protein DOT1 PCMT PF01135.19 gi|385805356|ref|YP_005841754.1| - 3.4e-05 23.7 0.0 4e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|385805356|ref|YP_005841754.1| - 7.3e-05 22.7 0.0 0.0001 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385805356|ref|YP_005841754.1| - 0.0002 22.0 0.0 0.00027 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|385805356|ref|YP_005841754.1| - 0.00028 20.4 0.0 0.00038 20.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|385805356|ref|YP_005841754.1| - 0.0005 19.9 0.1 0.00069 19.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|385805356|ref|YP_005841754.1| - 0.0023 17.0 0.0 0.0028 16.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|385805356|ref|YP_005841754.1| - 0.0078 15.8 0.0 0.0099 15.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|385805356|ref|YP_005841754.1| - 0.019 14.9 0.0 0.028 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|385805356|ref|YP_005841754.1| - 0.03 13.7 0.1 0.037 13.4 0.1 1.1 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|385805356|ref|YP_005841754.1| - 0.038 14.0 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|385805356|ref|YP_005841754.1| - 0.077 12.6 0.0 0.097 12.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.10 gi|385805356|ref|YP_005841754.1| - 0.11 12.1 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|385805356|ref|YP_005841754.1| - 0.13 11.7 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase CMAS PF02353.20 gi|385805356|ref|YP_005841754.1| - 0.14 11.4 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Tmem26 PF09772.9 gi|385805356|ref|YP_005841754.1| - 0.18 11.1 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein 26 SBP_bac_5 PF00496.22 gi|385805357|ref|YP_005841755.1| - 5.5e-17 61.8 2.7 2.3e-09 36.7 0.0 3.5 2 2 1 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|385805357|ref|YP_005841755.1| - 0.15 11.9 0.5 0.31 10.9 0.5 1.5 1 0 0 1 1 1 0 Rifin MGC-24 PF05283.11 gi|385805357|ref|YP_005841755.1| - 0.22 12.0 2.7 0.51 10.8 2.7 1.6 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF5305 PF17231.2 gi|385805357|ref|YP_005841755.1| - 5 6.5 7.6 0.55 9.6 3.2 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5305) BPD_transp_1 PF00528.22 gi|385805358|ref|YP_005841756.1| - 9e-40 136.4 21.8 9e-40 136.4 21.8 2.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BNIP3 PF06553.12 gi|385805358|ref|YP_005841756.1| - 0.1 12.3 0.2 0.19 11.4 0.2 1.4 1 0 0 1 1 1 0 BNIP3 Arg_decarbox_C PF17944.1 gi|385805358|ref|YP_005841756.1| - 0.17 12.5 0.0 0.31 11.6 0.0 1.4 1 0 0 1 1 1 0 Arginine decarboxylase C-terminal helical extension BPD_transp_1 PF00528.22 gi|385805359|ref|YP_005841757.1| - 1.5e-27 96.6 15.1 1.5e-27 96.6 15.1 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|385805359|ref|YP_005841757.1| - 0.00067 19.6 0.3 0.00067 19.6 0.3 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Flp1_like PF16982.5 gi|385805359|ref|YP_005841757.1| - 0.27 10.7 1.9 0.76 9.2 1.9 1.8 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain ABC_tran PF00005.27 gi|385805360|ref|YP_005841758.1| - 7.7e-29 101.0 0.0 1.1e-28 100.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|385805360|ref|YP_005841758.1| - 2.5e-20 72.7 0.0 4.6e-20 71.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|385805360|ref|YP_005841758.1| - 7.6e-08 32.5 0.3 3e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385805360|ref|YP_005841758.1| - 1.9e-06 27.5 0.4 6.8e-05 22.4 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|385805360|ref|YP_005841758.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|385805360|ref|YP_005841758.1| - 0.021 14.6 0.1 0.04 13.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|385805360|ref|YP_005841758.1| - 0.072 13.5 0.2 5.5 7.4 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|385805360|ref|YP_005841758.1| - 0.088 13.1 0.6 7.3 6.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|385805360|ref|YP_005841758.1| - 0.39 9.9 1.7 0.84 8.8 0.2 2.0 2 1 0 2 2 2 0 NB-ARC domain ABC_tran PF00005.27 gi|385805361|ref|YP_005841759.1| - 4.6e-25 88.7 0.0 8.8e-25 87.8 0.0 1.5 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|385805361|ref|YP_005841759.1| - 5.7e-17 62.0 0.0 1.5e-16 60.6 0.0 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|385805361|ref|YP_005841759.1| - 0.00026 20.9 0.5 0.013 15.3 0.1 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|385805361|ref|YP_005841759.1| - 0.00029 21.1 0.5 0.0054 17.0 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|385805361|ref|YP_005841759.1| - 0.044 13.8 0.1 0.087 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|385805361|ref|YP_005841759.1| - 0.066 12.7 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|385805361|ref|YP_005841759.1| - 0.073 12.8 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|385805361|ref|YP_005841759.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ACP_syn_III_C PF08541.10 gi|385805363|ref|YP_005841761.1| - 2.2e-13 50.2 0.0 6.2e-13 48.7 0.0 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|385805363|ref|YP_005841761.1| - 3.7e-06 26.8 0.3 0.00064 19.4 0.0 2.3 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|385805363|ref|YP_005841761.1| - 8.9e-06 25.3 0.1 4.1e-05 23.1 0.4 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|385805363|ref|YP_005841761.1| - 0.00087 19.1 0.7 0.0038 17.1 0.3 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HTH_35 PF13693.6 gi|385805363|ref|YP_005841761.1| - 0.16 12.0 0.0 5.9 7.0 0.0 2.5 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Thiolase_N PF00108.23 gi|385805364|ref|YP_005841762.1| - 5.1e-13 49.0 0.0 1.5e-10 40.9 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|385805364|ref|YP_005841762.1| - 7.7e-06 25.7 0.0 0.0015 18.4 0.0 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.18 gi|385805364|ref|YP_005841762.1| - 0.023 14.3 0.6 0.077 12.7 0.1 2.0 2 0 0 2 2 2 0 Thiolase, C-terminal domain DUF35_N PF12172.8 gi|385805365|ref|YP_005841763.1| - 2.4e-11 43.3 0.5 2.4e-11 43.3 0.5 1.5 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|385805365|ref|YP_005841763.1| - 1.3e-07 31.5 0.0 1.9e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated TF_Zn_Ribbon PF08271.12 gi|385805365|ref|YP_005841763.1| - 0.00077 18.9 1.7 0.045 13.3 0.2 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding TackOD1 PF18551.1 gi|385805365|ref|YP_005841763.1| - 0.0073 16.0 0.4 0.01 15.5 0.4 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|385805365|ref|YP_005841763.1| - 0.037 14.0 1.4 0.045 13.8 0.5 1.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|385805365|ref|YP_005841763.1| - 0.044 13.8 0.9 0.069 13.2 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_13 PF09855.9 gi|385805365|ref|YP_005841763.1| - 0.052 13.7 1.2 17 5.7 0.2 3.0 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf_C2H2_10 PF18414.1 gi|385805365|ref|YP_005841763.1| - 0.058 12.9 1.1 0.058 12.9 1.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger A2L_zn_ribbon PF08792.10 gi|385805365|ref|YP_005841763.1| - 0.075 12.8 1.1 11 5.9 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|385805365|ref|YP_005841763.1| - 0.083 13.0 3.7 0.35 11.0 3.7 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF5603 PF18231.1 gi|385805365|ref|YP_005841763.1| - 0.099 13.0 0.1 0.14 12.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5603) DUF1936 PF09151.10 gi|385805365|ref|YP_005841763.1| - 0.17 11.8 0.2 0.17 11.8 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Nudix_N_2 PF14803.6 gi|385805365|ref|YP_005841763.1| - 0.42 10.6 6.0 2 8.4 0.8 2.4 1 1 1 2 2 2 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|385805365|ref|YP_005841763.1| - 0.7 9.7 3.9 2.4 8.0 3.9 1.8 1 1 0 1 1 1 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|385805365|ref|YP_005841763.1| - 2.3 8.2 6.0 3 7.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385805365|ref|YP_005841763.1| - 3.6 7.6 7.4 0.5 10.4 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain AIRS_C PF02769.22 gi|385805367|ref|YP_005841765.1| - 6.8e-18 65.3 0.1 9.2e-18 64.8 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|385805367|ref|YP_005841765.1| - 3.2e-07 30.9 0.0 6e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain tRNA-synt_His PF13393.6 gi|385805368|ref|YP_005841766.1| - 5.9e-43 147.3 0.0 6.9e-43 147.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|385805368|ref|YP_005841766.1| - 1.3e-10 41.3 0.2 3.3e-10 40.0 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|385805368|ref|YP_005841766.1| - 4.1e-10 39.9 0.0 7.1e-10 39.1 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|385805368|ref|YP_005841766.1| - 0.0011 18.2 0.8 0.04 13.0 0.3 2.8 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) DUF4327 PF14217.6 gi|385805368|ref|YP_005841766.1| - 0.022 14.9 0.2 0.047 13.8 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4327) DUF3627 PF12299.8 gi|385805368|ref|YP_005841766.1| - 0.14 12.3 2.0 0.23 11.6 0.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3627) FeoA PF04023.14 gi|385805369|ref|YP_005841767.1| - 5.8e-18 64.9 1.5 6.3e-18 64.8 1.5 1.0 1 0 0 1 1 1 1 FeoA domain TPP_enzyme_C PF02775.21 gi|385805370|ref|YP_005841768.1| - 1.7e-23 83.1 0.0 2.5e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|385805370|ref|YP_005841768.1| - 0.0008 18.7 0.0 0.001 18.4 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|385805371|ref|YP_005841769.1| - 2.2e-59 201.0 0.0 2.7e-59 200.7 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|385805371|ref|YP_005841769.1| - 1.1e-25 89.8 0.0 2.2e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|385805371|ref|YP_005841769.1| - 0.0035 17.2 0.0 0.0068 16.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|385805372|ref|YP_005841770.1| - 1.3e-16 59.6 15.7 5.9e-09 35.4 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385805372|ref|YP_005841770.1| - 6.6e-15 55.4 35.6 7.4e-09 36.1 13.9 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385805372|ref|YP_005841770.1| - 1.9e-11 43.5 14.6 3.5e-06 26.9 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|385805372|ref|YP_005841770.1| - 1.2e-10 41.3 13.0 2.2e-10 40.5 13.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385805372|ref|YP_005841770.1| - 7.7e-10 38.7 23.5 1.7e-06 28.1 13.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385805372|ref|YP_005841770.1| - 8.1e-10 39.5 10.0 4.8e-05 24.2 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|385805372|ref|YP_005841770.1| - 6.2e-09 36.2 5.5 0.00021 21.7 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385805372|ref|YP_005841770.1| - 2.2e-08 33.7 12.7 0.00024 21.0 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|385805372|ref|YP_005841770.1| - 7.5e-08 32.4 12.1 1.4e-07 31.6 12.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385805372|ref|YP_005841770.1| - 7e-07 29.3 12.7 0.0022 18.4 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385805372|ref|YP_005841770.1| - 1.9e-06 28.3 7.1 0.0035 17.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385805372|ref|YP_005841770.1| - 3.4e-05 24.5 18.7 0.025 15.5 6.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|385805372|ref|YP_005841770.1| - 0.033 14.7 11.8 0.64 10.6 0.9 2.9 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|385805372|ref|YP_005841770.1| - 0.39 11.6 12.8 0.23 12.3 2.6 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|385805372|ref|YP_005841770.1| - 0.82 9.9 10.7 1.8 8.8 2.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385805372|ref|YP_005841770.1| - 4.8 8.0 15.8 16 6.3 3.4 3.5 1 1 2 3 3 3 0 4Fe-4S single cluster domain POR PF01558.18 gi|385805373|ref|YP_005841771.1| - 6.5e-35 120.8 0.7 7.6e-35 120.6 0.7 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase P2_N PF18628.1 gi|385805373|ref|YP_005841771.1| - 0.037 13.8 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 Viral coat protein P2 N-terminal domain LPG_synthase_TM PF03706.13 gi|385805374|ref|YP_005841772.1| - 2.9e-13 50.0 21.1 4.4e-13 49.4 21.1 1.3 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Peptidase_M24 PF00557.24 gi|385805375|ref|YP_005841773.1| - 6.3e-32 111.0 0.0 7.5e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lon_C PF05362.13 gi|385805376|ref|YP_005841774.1| - 8.5e-13 48.3 0.4 1.6e-12 47.4 0.4 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain DUF4064 PF13273.6 gi|385805376|ref|YP_005841774.1| - 0.021 15.1 4.2 0.021 15.1 4.2 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF4064) ChlI PF13541.6 gi|385805376|ref|YP_005841774.1| - 0.036 13.9 0.0 0.09 12.6 0.0 1.7 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase Fusion_F0 PF13044.6 gi|385805376|ref|YP_005841774.1| - 0.085 11.5 3.6 0.17 10.5 3.6 1.4 1 0 0 1 1 1 0 Fusion glycoprotein F0, Isavirus ECSCR PF15820.5 gi|385805376|ref|YP_005841774.1| - 0.1 12.4 1.7 0.28 11.0 0.9 2.2 1 1 1 2 2 2 0 Endothelial cell-specific chemotaxis regulator Synaptobrevin PF00957.21 gi|385805376|ref|YP_005841774.1| - 0.14 12.0 1.3 5.1 7.0 0.6 2.8 2 0 0 2 2 2 0 Synaptobrevin DUF746 PF05344.11 gi|385805376|ref|YP_005841774.1| - 0.16 11.8 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) DUF5383 PF17355.2 gi|385805376|ref|YP_005841774.1| - 0.45 10.9 4.1 0.17 12.2 1.1 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5383) NTP_transf_2 PF01909.23 gi|385805377|ref|YP_005841775.1| - 2.8e-05 24.3 0.3 0.00011 22.5 0.0 2.1 2 0 0 2 2 2 1 Nucleotidyltransferase domain dCMP_cyt_deam_1 PF00383.23 gi|385805378|ref|YP_005841776.1| - 8.3e-19 67.4 0.1 9.8e-19 67.1 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|385805378|ref|YP_005841776.1| - 1e-10 41.9 0.1 2.4e-10 40.7 0.0 1.6 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|385805378|ref|YP_005841776.1| - 0.00098 18.8 0.4 0.25 10.9 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases AdoMet_dc PF02675.15 gi|385805379|ref|YP_005841777.1| - 8e-33 112.9 0.0 9.3e-33 112.7 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase CDP-OH_P_transf PF01066.21 gi|385805380|ref|YP_005841778.1| - 9.9e-11 42.3 0.2 9.9e-11 42.3 0.2 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF5455 PF17537.2 gi|385805380|ref|YP_005841778.1| - 0.078 13.4 2.1 0.43 11.0 0.0 2.6 2 1 1 3 3 3 0 Family of unknown function (DUF5455) HD_3 PF13023.6 gi|385805382|ref|YP_005841780.1| - 8.9e-21 74.5 0.0 1.5e-20 73.8 0.0 1.4 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|385805382|ref|YP_005841780.1| - 1.1e-15 57.8 0.2 2.2e-15 56.9 0.2 1.4 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|385805382|ref|YP_005841780.1| - 0.00072 19.8 0.0 0.0018 18.5 0.0 1.7 1 1 0 1 1 1 1 HD domain DNA_pol_lambd_f PF10391.9 gi|385805382|ref|YP_005841780.1| - 0.16 11.8 0.0 0.88 9.5 0.0 2.2 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Orthopox_B11R PF07033.11 gi|385805382|ref|YP_005841780.1| - 8.5 6.3 11.1 0.29 10.9 3.8 2.3 2 1 0 2 2 2 0 Orthopoxvirus B11R protein MFS_1 PF07690.16 gi|385805383|ref|YP_005841781.1| - 2.2e-17 63.0 54.6 1e-15 57.6 37.9 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily DAG1 PF05454.11 gi|385805383|ref|YP_005841781.1| - 0.25 10.7 0.1 0.39 10.1 0.1 1.2 1 0 0 1 1 1 0 Dystroglycan (Dystrophin-associated glycoprotein 1) Glycoprotein_G PF00802.19 gi|385805383|ref|YP_005841781.1| - 0.32 10.3 0.6 0.52 9.6 0.6 1.2 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G PK PF00224.21 gi|385805384|ref|YP_005841782.1| - 1.9e-90 303.3 0.5 2.4e-90 302.9 0.5 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|385805384|ref|YP_005841782.1| - 8.5e-14 51.8 0.0 2.3e-13 50.4 0.0 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|385805384|ref|YP_005841782.1| - 2.7e-06 26.7 0.0 4.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Met_10 PF02475.16 gi|385805385|ref|YP_005841783.1| - 4.9e-47 160.3 0.1 6.9e-47 159.8 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|385805385|ref|YP_005841783.1| - 1.5e-07 31.1 0.0 2.4e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|385805385|ref|YP_005841783.1| - 5.3e-05 22.8 0.1 8.2e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.16 gi|385805385|ref|YP_005841783.1| - 0.00053 19.3 0.0 0.0007 18.9 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.6 gi|385805385|ref|YP_005841783.1| - 0.00062 19.6 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|385805385|ref|YP_005841783.1| - 0.0019 17.9 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|385805385|ref|YP_005841783.1| - 0.0027 17.3 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|385805385|ref|YP_005841783.1| - 0.0097 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.17 gi|385805385|ref|YP_005841783.1| - 0.014 14.8 0.1 0.086 12.2 0.0 1.9 2 0 0 2 2 2 0 C-5 cytosine-specific DNA methylase Methyltransf_25 PF13649.6 gi|385805385|ref|YP_005841783.1| - 0.11 13.2 0.0 0.18 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain zf-H2C2_2 PF13465.6 gi|385805386|ref|YP_005841784.1| - 0.054 13.9 0.6 0.075 13.5 0.6 1.3 1 0 0 1 1 1 0 Zinc-finger double domain LBR_tudor PF09465.10 gi|385805386|ref|YP_005841784.1| - 0.12 12.2 0.3 0.61 9.9 0.0 1.9 1 1 1 2 2 2 0 Lamin-B receptor of TUDOR domain zf-C2H2_9 PF16293.5 gi|385805386|ref|YP_005841784.1| - 0.31 10.9 1.8 1.2 9.0 0.3 2.3 1 1 1 2 2 2 0 C2H2 type zinc-finger (1 copy) PEP-utilizers_C PF02896.18 gi|385805387|ref|YP_005841785.1| - 1.1e-82 277.5 0.5 1.9e-82 276.7 0.5 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|385805387|ref|YP_005841785.1| - 8.3e-59 199.5 0.0 1.6e-50 172.3 0.0 2.9 2 1 1 3 3 3 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|385805387|ref|YP_005841785.1| - 1.8e-26 91.6 0.6 5.7e-26 90.0 0.6 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Thymosin PF01290.20 gi|385805387|ref|YP_005841785.1| - 0.077 12.7 0.4 0.24 11.2 0.4 1.8 1 0 0 1 1 1 0 Thymosin beta-4 family TipAS PF07739.13 gi|385805387|ref|YP_005841785.1| - 1.1 9.9 3.8 2.4 8.7 0.1 3.3 3 0 0 3 3 3 0 TipAS antibiotic-recognition domain TFIIE_alpha PF02002.17 gi|385805388|ref|YP_005841786.1| - 0.0001 22.1 0.4 0.00011 22.0 0.4 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|385805388|ref|YP_005841786.1| - 0.021 14.7 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PDDEXK_1 PF12705.7 gi|385805388|ref|YP_005841786.1| - 0.068 13.1 0.0 0.071 13.0 0.0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily RNA_pol_Rpc34 PF05158.12 gi|385805388|ref|YP_005841786.1| - 0.074 12.4 6.3 0.12 11.8 2.8 1.9 1 1 1 2 2 2 0 RNA polymerase Rpc34 subunit Wyosine_form PF08608.12 gi|385805389|ref|YP_005841787.1| - 1.6e-20 73.2 0.0 3.2e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|385805389|ref|YP_005841787.1| - 8.2e-18 65.3 0.3 3.3e-17 63.4 0.2 1.9 2 1 0 2 2 2 1 Radical SAM superfamily SNARE_assoc PF09335.11 gi|385805390|ref|YP_005841788.1| - 4.4e-20 72.4 0.4 4.4e-20 72.4 0.4 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein HU-CCDC81_bac_2 PF18175.1 gi|385805391|ref|YP_005841789.1| - 0.003 17.4 0.3 0.0098 15.7 0.1 2.0 2 0 0 2 2 2 1 CCDC81-like prokaryotic HU domain 2 Baculo_PEP_C PF04513.12 gi|385805391|ref|YP_005841789.1| - 0.075 13.1 4.7 0.13 12.3 4.7 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus MatE PF01554.18 gi|385805393|ref|YP_005841791.1| - 5e-49 166.0 24.8 1.2e-29 103.0 8.8 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|385805393|ref|YP_005841791.1| - 7.2e-09 35.9 11.7 7.2e-09 35.9 11.7 4.7 3 3 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain HTH_5 PF01022.20 gi|385805395|ref|YP_005841793.1| - 9.3e-09 35.0 0.1 1.8e-08 34.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|385805395|ref|YP_005841793.1| - 5e-08 32.7 0.1 9.2e-08 31.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|385805395|ref|YP_005841793.1| - 1.4e-05 24.9 0.9 2.2e-05 24.3 0.9 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|385805395|ref|YP_005841793.1| - 5.1e-05 23.1 0.0 7.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|385805395|ref|YP_005841793.1| - 0.0002 21.1 0.2 0.0005 19.8 0.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) HTH_24 PF13412.6 gi|385805395|ref|YP_005841793.1| - 0.00033 20.1 0.1 0.00065 19.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|385805395|ref|YP_005841793.1| - 0.00043 20.0 0.0 0.00063 19.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|385805395|ref|YP_005841793.1| - 0.00064 19.4 0.1 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|385805395|ref|YP_005841793.1| - 0.00067 19.5 0.2 0.0013 18.7 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|385805395|ref|YP_005841793.1| - 0.0011 19.5 0.0 0.0016 18.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|385805395|ref|YP_005841793.1| - 0.0058 16.5 0.4 0.014 15.3 0.4 1.6 1 0 0 1 1 1 1 HTH domain FAM91_N PF14647.6 gi|385805395|ref|YP_005841793.1| - 0.0094 15.3 0.1 0.0097 15.2 0.1 1.2 1 0 0 1 1 1 1 FAM91 N-terminus HTH_36 PF13730.6 gi|385805395|ref|YP_005841793.1| - 0.0098 15.8 0.1 0.02 14.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain SpoIIID PF12116.8 gi|385805395|ref|YP_005841793.1| - 0.031 14.4 0.1 0.074 13.2 0.0 1.7 2 0 0 2 2 2 0 Stage III sporulation protein D Mga PF05043.13 gi|385805395|ref|YP_005841793.1| - 0.033 14.8 5.2 0.096 13.3 0.7 2.3 2 1 0 2 2 2 0 Mga helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385805395|ref|YP_005841793.1| - 0.042 13.8 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|385805395|ref|YP_005841793.1| - 0.055 13.5 0.0 0.082 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|385805395|ref|YP_005841793.1| - 0.079 13.1 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 Trp repressor protein HTH_41 PF14502.6 gi|385805395|ref|YP_005841793.1| - 0.091 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|385805395|ref|YP_005841793.1| - 0.12 12.5 0.6 0.28 11.3 0.1 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain ArsA_HSP20 PF17886.1 gi|385805396|ref|YP_005841794.1| - 1.9e-12 46.6 0.1 5.4e-12 45.1 0.1 1.7 1 1 1 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|385805396|ref|YP_005841794.1| - 5.7e-11 42.5 2.4 2.3e-09 37.3 2.4 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1_CS PF18201.1 gi|385805396|ref|YP_005841794.1| - 0.0092 16.4 0.1 0.015 15.7 0.1 1.3 1 0 0 1 1 1 1 PIH1 CS-like domain CS PF04969.16 gi|385805396|ref|YP_005841794.1| - 0.01 16.8 0.3 0.023 15.7 0.2 1.6 1 1 0 1 1 1 0 CS domain GvpH PF05455.11 gi|385805396|ref|YP_005841794.1| - 0.037 14.1 0.0 0.063 13.4 0.0 1.4 1 0 0 1 1 1 0 GvpH Stealth_CR3 PF17102.5 gi|385805396|ref|YP_005841794.1| - 0.2 11.6 0.9 0.37 10.7 0.9 1.3 1 0 0 1 1 1 0 Stealth protein CR3, conserved region 3 RHH_1 PF01402.21 gi|385805397|ref|YP_005841795.1| - 8.3e-09 35.1 0.0 0.00026 20.8 0.0 2.4 3 0 0 3 3 3 2 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|385805397|ref|YP_005841795.1| - 0.017 15.3 0.8 1.4 9.1 0.1 2.4 2 1 1 3 3 3 0 Ribbon-Helix-Helix transcriptional regulator family RelB PF04221.12 gi|385805397|ref|YP_005841795.1| - 0.097 12.6 0.0 1.5 8.8 0.0 2.2 1 1 1 2 2 2 0 RelB antitoxin zf-ZPR1 PF03367.13 gi|385805398|ref|YP_005841796.1| - 1.3e-24 86.9 0.9 1.5e-24 86.7 0.9 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|385805398|ref|YP_005841796.1| - 0.023 15.1 0.0 0.045 14.1 0.0 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Elf1 PF05129.13 gi|385805398|ref|YP_005841796.1| - 0.065 13.3 0.1 0.16 12.0 0.1 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like ABC_tran PF00005.27 gi|385805399|ref|YP_005841797.1| - 3.4e-34 118.3 0.1 5e-34 117.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|385805399|ref|YP_005841797.1| - 3.9e-06 26.5 0.6 0.00021 20.8 0.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385805399|ref|YP_005841797.1| - 3.7e-05 23.7 0.4 0.062 13.1 0.5 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|385805399|ref|YP_005841797.1| - 0.00026 20.7 0.1 0.00049 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385805399|ref|YP_005841797.1| - 0.0023 17.8 0.2 0.0051 16.7 0.2 1.6 1 1 0 1 1 1 1 RsgA GTPase T2SSE PF00437.20 gi|385805399|ref|YP_005841797.1| - 0.0043 16.2 0.1 0.0077 15.3 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|385805399|ref|YP_005841797.1| - 0.0048 17.3 0.1 0.0096 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|385805399|ref|YP_005841797.1| - 0.0055 17.0 0.0 0.024 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|385805399|ref|YP_005841797.1| - 0.0065 17.0 0.4 0.0065 17.0 0.4 1.9 2 1 0 2 2 2 1 AAA domain RNA12 PF10443.9 gi|385805399|ref|YP_005841797.1| - 0.013 14.3 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein Rad17 PF03215.15 gi|385805399|ref|YP_005841797.1| - 0.014 15.3 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|385805399|ref|YP_005841797.1| - 0.019 14.9 0.1 0.032 14.2 0.1 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|385805399|ref|YP_005841797.1| - 0.021 15.4 0.0 0.25 11.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|385805399|ref|YP_005841797.1| - 0.047 13.4 0.0 0.48 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|385805399|ref|YP_005841797.1| - 0.055 12.6 0.2 0.11 11.7 0.2 1.7 1 1 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.6 gi|385805399|ref|YP_005841797.1| - 0.067 13.4 0.0 1.1 9.6 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit PRK PF00485.18 gi|385805399|ref|YP_005841797.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|385805399|ref|YP_005841797.1| - 0.11 12.6 1.4 0.52 10.4 0.6 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|385805399|ref|YP_005841797.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase tRNA_bind PF01588.20 gi|385805400|ref|YP_005841798.1| - 2.5e-14 53.1 0.0 2.9e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain KH_5 PF13184.6 gi|385805401|ref|YP_005841799.1| - 4.9e-06 26.5 0.6 3.9e-05 23.7 0.6 2.2 1 1 0 1 1 1 1 NusA-like KH domain Ribosomal_S7e PF01251.18 gi|385805401|ref|YP_005841799.1| - 0.0012 18.7 4.4 0.045 13.5 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S7e AA_permease_2 PF13520.6 gi|385805402|ref|YP_005841800.1| - 6.6e-37 127.3 55.3 8.1e-37 127.0 55.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385805402|ref|YP_005841800.1| - 6.4e-28 97.6 45.6 8.5e-28 97.2 45.6 1.0 1 0 0 1 1 1 1 Amino acid permease PTH2 PF01981.16 gi|385805403|ref|YP_005841801.1| - 4.9e-41 139.7 0.0 5.5e-41 139.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 EF1_GNE PF00736.19 gi|385805404|ref|YP_005841802.1| - 4e-15 55.8 0.0 4.5e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AAA PF00004.29 gi|385805405|ref|YP_005841803.1| - 7.8e-98 324.0 0.0 4.3e-48 163.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385805405|ref|YP_005841803.1| - 4.9e-37 125.5 2.0 4.5e-19 68.0 0.6 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|385805405|ref|YP_005841803.1| - 3.5e-36 123.3 0.6 4.6e-35 119.7 1.4 2.5 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|385805405|ref|YP_005841803.1| - 1.6e-14 53.9 0.0 7.2e-07 29.1 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|385805405|ref|YP_005841803.1| - 3e-14 52.6 1.1 9.5e-14 50.9 1.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|385805405|ref|YP_005841803.1| - 3.6e-14 53.5 0.3 1.2e-05 25.7 0.1 3.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|385805405|ref|YP_005841803.1| - 3.5e-12 46.5 1.0 7.2e-05 22.8 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|385805405|ref|YP_005841803.1| - 1.1e-11 45.2 0.0 2.5e-05 24.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|385805405|ref|YP_005841803.1| - 7.9e-11 42.4 1.2 0.0083 16.4 0.0 4.3 2 2 2 4 4 4 2 AAA domain TIP49 PF06068.13 gi|385805405|ref|YP_005841803.1| - 1.8e-10 40.6 0.2 0.00017 20.9 0.0 2.7 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|385805405|ref|YP_005841803.1| - 3.5e-10 40.2 0.0 0.00042 20.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|385805405|ref|YP_005841803.1| - 6.3e-09 36.0 0.0 0.0012 18.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|385805405|ref|YP_005841803.1| - 4.3e-08 33.0 0.2 0.012 15.3 0.1 4.1 4 1 0 4 4 3 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|385805405|ref|YP_005841803.1| - 1.8e-07 31.5 0.0 0.015 15.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|385805405|ref|YP_005841803.1| - 4.1e-07 30.6 0.0 0.048 14.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|385805405|ref|YP_005841803.1| - 4.3e-07 29.5 0.5 0.0078 15.6 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|385805405|ref|YP_005841803.1| - 4.4e-07 29.8 0.0 0.012 15.3 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF815 PF05673.13 gi|385805405|ref|YP_005841803.1| - 5.2e-07 29.1 0.0 0.035 13.3 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Vps4_C PF09336.10 gi|385805405|ref|YP_005841803.1| - 1.3e-06 28.3 0.1 0.00051 20.0 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_25 PF13481.6 gi|385805405|ref|YP_005841803.1| - 4.2e-06 26.5 3.4 0.23 11.0 0.2 4.3 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|385805405|ref|YP_005841803.1| - 4.3e-06 26.6 0.2 0.078 12.7 0.1 2.8 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|385805405|ref|YP_005841803.1| - 6.3e-06 26.5 0.0 0.17 12.3 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ATPase PF06745.13 gi|385805405|ref|YP_005841803.1| - 6.4e-06 25.7 0.5 0.37 10.1 0.0 3.5 2 1 0 3 3 3 2 KaiC Zeta_toxin PF06414.12 gi|385805405|ref|YP_005841803.1| - 7.3e-06 25.4 0.0 0.03 13.6 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ATPase_2 PF01637.18 gi|385805405|ref|YP_005841803.1| - 8.3e-06 25.9 0.2 0.84 9.5 0.1 3.9 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|385805405|ref|YP_005841803.1| - 1.1e-05 25.4 0.4 0.3 11.0 0.0 3.7 3 1 1 4 4 4 2 NACHT domain AAA_7 PF12775.7 gi|385805405|ref|YP_005841803.1| - 2e-05 24.2 0.0 0.29 10.6 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|385805405|ref|YP_005841803.1| - 3e-05 23.9 0.0 0.19 11.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|385805405|ref|YP_005841803.1| - 4.5e-05 24.0 0.0 0.42 11.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|385805405|ref|YP_005841803.1| - 6.8e-05 22.9 0.0 0.62 10.1 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|385805405|ref|YP_005841803.1| - 0.00014 21.0 0.7 0.38 9.8 0.0 2.6 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|385805405|ref|YP_005841803.1| - 0.00026 20.5 1.2 0.27 10.7 0.0 2.8 3 0 0 3 3 2 2 PhoH-like protein Bac_DnaA PF00308.18 gi|385805405|ref|YP_005841803.1| - 0.00026 20.9 0.0 0.11 12.3 0.0 2.9 3 0 0 3 3 2 1 Bacterial dnaA protein DUF2075 PF09848.9 gi|385805405|ref|YP_005841803.1| - 0.00033 20.0 0.0 0.095 11.9 0.0 2.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|385805405|ref|YP_005841803.1| - 0.00053 19.2 0.0 0.84 8.8 0.0 3.0 3 0 0 3 3 3 1 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|385805405|ref|YP_005841803.1| - 0.00064 19.9 0.0 1.9 8.6 0.0 2.8 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.6 gi|385805405|ref|YP_005841803.1| - 0.00081 19.7 1.7 2.5 8.4 0.0 3.1 2 1 1 3 3 3 2 AAA domain UFD1 PF03152.14 gi|385805405|ref|YP_005841803.1| - 0.00084 18.9 0.1 0.005 16.3 0.1 2.1 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 AAA_30 PF13604.6 gi|385805405|ref|YP_005841803.1| - 0.001 18.8 0.3 1 9.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|385805405|ref|YP_005841803.1| - 0.0086 16.5 0.0 7 7.1 0.0 2.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|385805405|ref|YP_005841803.1| - 0.0099 15.8 2.9 7.1 6.5 0.0 4.4 4 1 1 5 5 5 0 NTPase Guanylate_kin PF00625.21 gi|385805405|ref|YP_005841803.1| - 0.01 15.6 0.1 7.8 6.1 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase Viral_helicase1 PF01443.18 gi|385805405|ref|YP_005841803.1| - 0.012 15.4 0.0 4.9 6.8 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|385805405|ref|YP_005841803.1| - 0.017 14.9 0.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AFG1_ATPase PF03969.16 gi|385805405|ref|YP_005841803.1| - 0.017 14.0 0.0 1.7 7.5 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase TniB PF05621.11 gi|385805405|ref|YP_005841803.1| - 0.022 14.2 0.0 3.6 7.0 0.0 3.0 3 1 1 4 4 3 0 Bacterial TniB protein PduV-EutP PF10662.9 gi|385805405|ref|YP_005841803.1| - 0.023 14.5 0.0 6.4 6.5 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IPT PF01745.16 gi|385805405|ref|YP_005841803.1| - 0.023 14.1 0.2 6.4 6.1 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase CPT PF07931.12 gi|385805405|ref|YP_005841803.1| - 0.042 13.7 0.0 6.1 6.6 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein cobW PF02492.19 gi|385805405|ref|YP_005841803.1| - 0.059 13.0 0.0 7.5 6.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MCM PF00493.23 gi|385805405|ref|YP_005841803.1| - 0.059 12.5 0.0 7.5 5.6 0.0 2.7 2 1 0 2 2 2 0 MCM P-loop domain AAA_29 PF13555.6 gi|385805405|ref|YP_005841803.1| - 0.089 12.6 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF2130 PF09903.9 gi|385805405|ref|YP_005841803.1| - 0.091 12.0 0.1 0.67 9.2 0.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Zot PF05707.12 gi|385805405|ref|YP_005841803.1| - 0.1 12.2 0.0 0.61 9.7 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF1905 PF08922.11 gi|385805405|ref|YP_005841803.1| - 0.21 11.7 0.6 22 5.2 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) XPG_N PF00752.17 gi|385805407|ref|YP_005841805.1| - 3.7e-24 85.1 0.0 7.6e-24 84.1 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain XPG_I PF00867.18 gi|385805407|ref|YP_005841805.1| - 5.9e-24 84.2 0.0 1.5e-23 83.0 0.0 1.7 1 0 0 1 1 1 1 XPG I-region 5_3_exonuc PF01367.20 gi|385805407|ref|YP_005841805.1| - 0.00045 20.8 0.3 0.00045 20.8 0.3 2.5 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|385805407|ref|YP_005841805.1| - 0.014 16.0 0.2 0.093 13.4 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain eIF3_N PF09440.10 gi|385805407|ref|YP_005841805.1| - 0.023 15.1 1.3 0.52 10.8 0.1 2.5 2 0 0 2 2 2 0 eIF3 subunit 6 N terminal domain INTS5_N PF14837.6 gi|385805407|ref|YP_005841805.1| - 0.11 12.1 0.8 0.85 9.2 0.3 2.0 2 0 0 2 2 2 0 Integrator complex subunit 5 N-terminus QueH PF02677.14 gi|385805407|ref|YP_005841805.1| - 2.4 8.2 5.9 0.8 9.8 0.5 2.1 2 0 0 2 2 2 0 Epoxyqueuosine reductase QueH CoA_binding PF02629.19 gi|385805408|ref|YP_005841806.1| - 4.4e-27 94.6 1.9 4.4e-27 94.6 1.9 1.9 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|385805408|ref|YP_005841806.1| - 2.5e-14 53.4 0.1 4.5e-14 52.5 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|385805408|ref|YP_005841806.1| - 4.4e-12 46.5 0.1 7.5e-12 45.8 0.1 1.4 1 0 0 1 1 1 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|385805408|ref|YP_005841806.1| - 5.9e-11 42.3 0.0 1.4e-10 41.1 0.0 1.6 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain GFO_IDH_MocA PF01408.22 gi|385805408|ref|YP_005841806.1| - 8.1e-05 23.4 0.4 0.00021 22.1 0.2 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|385805408|ref|YP_005841806.1| - 0.00044 19.9 0.9 0.00075 19.1 0.9 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATP-grasp_2 PF08442.10 gi|385805409|ref|YP_005841807.1| - 3.7e-55 186.6 0.1 6.9e-55 185.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|385805409|ref|YP_005841807.1| - 7.4e-15 55.1 0.0 1.2e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase RimK PF08443.11 gi|385805409|ref|YP_005841807.1| - 0.00018 21.2 0.1 0.00034 20.3 0.1 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|385805409|ref|YP_005841807.1| - 0.00021 21.1 0.4 0.00038 20.3 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|385805409|ref|YP_005841807.1| - 0.00052 19.5 0.4 0.0028 17.1 0.3 2.2 2 1 0 2 2 2 1 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|385805409|ref|YP_005841807.1| - 0.0096 15.4 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 1 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain Radical_SAM PF04055.21 gi|385805410|ref|YP_005841808.1| - 4.3e-18 66.2 0.0 6.3e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|385805410|ref|YP_005841808.1| - 6.7e-10 39.4 0.1 1e-09 38.8 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|385805410|ref|YP_005841808.1| - 9.3e-07 29.0 0.0 1.9e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain CNOT1_HEAT PF16418.5 gi|385805411|ref|YP_005841809.1| - 0.034 14.2 0.0 0.047 13.8 0.0 1.2 1 0 0 1 1 1 0 CCR4-NOT transcription complex subunit 1 HEAT repeat Peptidase_S24 PF00717.23 gi|385805412|ref|YP_005841810.1| - 2.4e-08 33.8 0.3 4.2e-08 33.0 0.3 1.4 1 0 0 1 1 1 1 Peptidase S24-like Zn_peptidase_2 PF04298.12 gi|385805412|ref|YP_005841810.1| - 0.47 9.8 3.5 1 8.7 3.5 1.5 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase MFS_1 PF07690.16 gi|385805414|ref|YP_005841812.1| - 2.2e-15 56.4 24.1 2.2e-15 56.4 24.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_A24 PF01478.18 gi|385805417|ref|YP_005841815.1| - 0.0046 17.3 6.8 0.0046 17.3 6.8 2.5 2 1 0 2 2 2 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|385805417|ref|YP_005841815.1| - 0.0078 16.7 1.1 0.044 14.3 1.1 2.2 1 1 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II HTH_OrfB_IS605 PF12323.8 gi|385805418|ref|YP_005841816.1| - 0.01 15.3 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain BPD_transp_1 PF00528.22 gi|385805419|ref|YP_005841817.1| - 4.2e-16 59.2 66.6 2.1e-13 50.4 21.8 3.9 2 1 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component CTP_synth_N PF06418.14 gi|385805420|ref|YP_005841818.1| - 1.8e-115 384.8 1.7 2.7e-115 384.2 1.7 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|385805420|ref|YP_005841818.1| - 6.3e-47 159.8 0.0 1.5e-46 158.6 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385805420|ref|YP_005841818.1| - 6.3e-07 29.4 0.0 1.4e-06 28.3 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|385805420|ref|YP_005841818.1| - 0.00018 21.6 0.0 0.00038 20.5 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385805420|ref|YP_005841818.1| - 0.0062 16.0 0.7 0.13 11.7 0.2 2.5 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|385805420|ref|YP_005841818.1| - 0.052 13.5 0.1 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain SLBP_RNA_bind PF15247.6 gi|385805420|ref|YP_005841818.1| - 0.14 12.3 3.2 5.8 7.1 1.4 3.0 3 0 0 3 3 3 0 Histone RNA hairpin-binding protein RNA-binding domain Peptidase_S24 PF00717.23 gi|385805421|ref|YP_005841819.1| - 2.9e-08 33.6 0.4 4.2e-08 33.0 0.4 1.3 1 0 0 1 1 1 1 Peptidase S24-like DUF2606 PF10794.9 gi|385805421|ref|YP_005841819.1| - 0.092 12.5 0.3 0.15 11.8 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2606) AAA_assoc_C PF09821.9 gi|385805422|ref|YP_005841820.1| - 8.6e-24 84.4 0.1 1.1e-23 84.0 0.1 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain DUF1507 PF07408.11 gi|385805422|ref|YP_005841820.1| - 0.014 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1507) DUF1673 PF07895.11 gi|385805422|ref|YP_005841820.1| - 0.11 12.2 0.6 0.14 11.8 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1673) Tsc35 PF15079.6 gi|385805422|ref|YP_005841820.1| - 0.14 11.7 0.4 0.5 9.9 0.2 1.8 2 0 0 2 2 2 0 Testis-specific protein 35 TBP PF00352.21 gi|385805423|ref|YP_005841821.1| - 1.8e-60 200.8 0.5 3.8e-30 103.7 0.1 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|385805423|ref|YP_005841821.1| - 6.1e-07 29.5 0.0 0.024 14.8 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) TFIIE_beta PF02186.15 gi|385805423|ref|YP_005841821.1| - 0.0057 16.9 0.1 0.017 15.4 0.1 1.8 1 0 0 1 1 1 1 TFIIE beta subunit core domain HTH_20 PF12840.7 gi|385805424|ref|YP_005841822.1| - 4.9e-10 39.3 0.0 7.5e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|385805424|ref|YP_005841822.1| - 1.1e-09 37.9 0.0 1.9e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|385805424|ref|YP_005841822.1| - 2e-07 30.8 0.0 3.2e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|385805424|ref|YP_005841822.1| - 9.2e-06 25.5 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|385805424|ref|YP_005841822.1| - 7.8e-05 22.1 0.2 0.00021 20.8 0.2 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|385805424|ref|YP_005841822.1| - 0.00072 19.7 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|385805424|ref|YP_005841822.1| - 0.0023 18.4 0.0 0.0042 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|385805424|ref|YP_005841822.1| - 0.0044 17.2 0.0 0.0096 16.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|385805424|ref|YP_005841822.1| - 0.0082 16.2 0.1 0.012 15.7 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.10 gi|385805424|ref|YP_005841822.1| - 0.0093 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|385805424|ref|YP_005841822.1| - 0.011 15.7 0.0 0.03 14.3 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|385805424|ref|YP_005841822.1| - 0.038 13.7 0.1 0.048 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|385805424|ref|YP_005841822.1| - 0.046 13.6 0.1 0.067 13.1 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|385805424|ref|YP_005841822.1| - 0.061 13.3 0.1 0.13 12.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain SgrR_N PF12793.7 gi|385805424|ref|YP_005841822.1| - 0.11 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term GDC-P PF02347.16 gi|385805425|ref|YP_005841823.1| - 6e-101 338.4 0.0 7.5e-101 338.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_1_2 PF00155.21 gi|385805425|ref|YP_005841823.1| - 0.037 13.2 0.1 6.7 5.8 0.1 2.1 2 0 0 2 2 2 0 Aminotransferase class I and II C2 PF00168.30 gi|385805426|ref|YP_005841824.1| - 0.014 15.7 0.3 0.018 15.3 0.1 1.4 1 1 0 1 1 1 0 C2 domain GDC-P PF02347.16 gi|385805427|ref|YP_005841825.1| - 1.2e-08 34.2 0.0 2.2e-08 33.4 0.0 1.4 1 1 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|385805427|ref|YP_005841825.1| - 6.7e-08 31.9 0.0 1.4e-07 30.8 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385805427|ref|YP_005841825.1| - 0.0015 17.8 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase MAF_flag10 PF01973.18 gi|385805428|ref|YP_005841826.1| - 7.6e-16 58.3 0.3 1.2e-15 57.7 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|385805428|ref|YP_005841826.1| - 0.031 14.3 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain PTPS PF01242.19 gi|385805429|ref|YP_005841827.1| - 5.2e-27 94.3 0.0 6.4e-27 94.0 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase RE_MamI PF09567.10 gi|385805429|ref|YP_005841827.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease GCHY-1 PF02649.14 gi|385805430|ref|YP_005841828.1| - 1.5e-47 162.3 0.1 2.7e-47 161.5 0.1 1.4 1 1 0 1 1 1 1 Type I GTP cyclohydrolase folE2 GerD PF17898.1 gi|385805430|ref|YP_005841828.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Spore germination GerD central core domain DUF1464 PF07318.12 gi|385805431|ref|YP_005841829.1| - 2.7e-73 247.0 0.2 3.1e-73 246.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) AAA PF00004.29 gi|385805432|ref|YP_005841830.1| - 2.5e-38 131.5 0.0 6.1e-38 130.2 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|385805432|ref|YP_005841830.1| - 6e-11 42.2 0.7 1.9e-10 40.6 0.7 1.9 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_14 PF13173.6 gi|385805432|ref|YP_005841830.1| - 9.3e-08 32.2 0.0 2.7e-07 30.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_lid_3 PF17862.1 gi|385805432|ref|YP_005841830.1| - 1.1e-07 31.6 0.0 2.8e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|385805432|ref|YP_005841830.1| - 4.2e-07 30.2 0.0 9.4e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|385805432|ref|YP_005841830.1| - 6.2e-07 29.5 0.0 4.9e-06 26.6 0.0 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|385805432|ref|YP_005841830.1| - 1.9e-06 28.2 0.1 0.00038 20.7 0.0 3.2 3 2 0 3 3 1 1 AAA domain Vps4_C PF09336.10 gi|385805432|ref|YP_005841830.1| - 1.1e-05 25.3 0.2 5e-05 23.2 0.0 2.1 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain RuvB_N PF05496.12 gi|385805432|ref|YP_005841830.1| - 9.2e-05 22.2 0.1 0.00055 19.7 0.0 2.2 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|385805432|ref|YP_005841830.1| - 0.00019 21.9 0.0 0.0044 17.4 0.0 2.7 2 1 1 3 3 2 1 AAA ATPase domain TPR_11 PF13414.6 gi|385805432|ref|YP_005841830.1| - 0.00086 18.9 0.2 0.0025 17.4 0.2 1.8 1 0 0 1 1 1 1 TPR repeat RNA_helicase PF00910.22 gi|385805432|ref|YP_005841830.1| - 0.0012 19.2 0.2 0.016 15.6 0.0 2.8 4 0 0 4 4 2 1 RNA helicase TIP49 PF06068.13 gi|385805432|ref|YP_005841830.1| - 0.0018 17.6 0.1 0.011 15.0 0.0 2.0 1 1 1 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|385805432|ref|YP_005841830.1| - 0.0023 17.7 0.0 0.0053 16.5 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|385805432|ref|YP_005841830.1| - 0.0028 17.3 0.1 0.063 12.8 0.1 2.3 1 1 0 2 2 2 1 AAA domain TPR_1 PF00515.28 gi|385805432|ref|YP_005841830.1| - 0.0028 17.4 0.3 0.0076 16.0 0.3 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat Mg_chelatase PF01078.21 gi|385805432|ref|YP_005841830.1| - 0.0037 16.7 0.1 0.007 15.8 0.1 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|385805432|ref|YP_005841830.1| - 0.0076 16.4 0.0 0.037 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain TPR_8 PF13181.6 gi|385805432|ref|YP_005841830.1| - 0.0097 16.1 0.2 0.0097 16.1 0.2 2.8 3 0 0 3 3 2 1 Tetratricopeptide repeat ATPase_2 PF01637.18 gi|385805432|ref|YP_005841830.1| - 0.0098 15.8 1.4 0.56 10.1 0.0 3.0 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|385805432|ref|YP_005841830.1| - 0.01 15.6 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF5113 PF17140.4 gi|385805432|ref|YP_005841830.1| - 0.011 15.6 0.2 0.02 14.7 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) AAA_24 PF13479.6 gi|385805432|ref|YP_005841830.1| - 0.012 15.4 0.1 0.075 12.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain TPR_2 PF07719.17 gi|385805432|ref|YP_005841830.1| - 0.012 15.7 1.6 0.02 15.0 0.3 2.1 2 0 0 2 2 1 0 Tetratricopeptide repeat AAA_28 PF13521.6 gi|385805432|ref|YP_005841830.1| - 0.014 15.7 0.0 0.036 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385805432|ref|YP_005841830.1| - 0.015 15.8 0.0 0.045 14.3 0.0 1.9 1 0 0 1 1 1 0 AAA domain TPR_6 PF13174.6 gi|385805432|ref|YP_005841830.1| - 0.017 15.8 0.0 0.083 13.6 0.0 2.3 1 1 0 1 1 1 0 Tetratricopeptide repeat ABC_tran PF00005.27 gi|385805432|ref|YP_005841830.1| - 0.026 15.1 0.0 0.13 12.8 0.0 2.1 2 1 0 2 2 2 0 ABC transporter NACHT PF05729.12 gi|385805432|ref|YP_005841830.1| - 0.031 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_11 PF13086.6 gi|385805432|ref|YP_005841830.1| - 0.033 14.0 0.1 2.6 7.8 0.0 2.2 1 1 0 2 2 2 0 AAA domain TPR_7 PF13176.6 gi|385805432|ref|YP_005841830.1| - 0.035 14.1 0.0 0.12 12.5 0.0 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat Bac_DnaA PF00308.18 gi|385805432|ref|YP_005841830.1| - 0.037 13.9 0.0 0.075 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_17 PF13207.6 gi|385805432|ref|YP_005841830.1| - 0.045 14.2 0.0 0.29 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|385805432|ref|YP_005841830.1| - 0.054 12.8 0.0 0.15 11.3 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin TPR_12 PF13424.6 gi|385805432|ref|YP_005841830.1| - 0.062 13.6 0.1 0.14 12.4 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Parvo_NS1 PF01057.17 gi|385805432|ref|YP_005841830.1| - 0.085 11.9 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|385805432|ref|YP_005841830.1| - 0.094 12.0 0.9 4.6 6.5 0.0 2.8 2 1 1 3 3 3 0 KaiC Sigma54_activat PF00158.26 gi|385805432|ref|YP_005841830.1| - 0.1 12.3 0.0 0.5 10.1 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain FliS PF02561.14 gi|385805432|ref|YP_005841830.1| - 0.11 12.8 1.4 1.3 9.3 0.1 2.6 2 0 0 2 2 2 0 Flagellar protein FliS NB-ARC PF00931.22 gi|385805432|ref|YP_005841830.1| - 0.12 11.6 0.0 0.52 9.5 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain Vta1_C PF18097.1 gi|385805432|ref|YP_005841830.1| - 2.7 7.8 4.6 1 9.1 0.2 2.5 3 0 0 3 3 2 0 Vta1 C-terminal domain TrmB PF01978.19 gi|385805433|ref|YP_005841831.1| - 5.2e-06 26.2 0.3 0.00023 21.0 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|385805433|ref|YP_005841831.1| - 0.00067 19.3 0.0 0.0021 17.7 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RPA_C PF08784.11 gi|385805433|ref|YP_005841831.1| - 0.0037 17.9 1.9 0.0037 17.9 1.9 1.9 2 0 0 2 2 2 1 Replication protein A C terminal z-alpha PF02295.17 gi|385805433|ref|YP_005841831.1| - 0.02 14.9 1.0 0.02 14.9 1.0 3.0 4 0 0 4 4 4 0 Adenosine deaminase z-alpha domain LexA_DNA_bind PF01726.16 gi|385805433|ref|YP_005841831.1| - 0.044 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Membr_traf_MHD PF10540.9 gi|385805433|ref|YP_005841831.1| - 0.38 10.9 5.4 0.38 10.9 3.8 1.7 2 0 0 2 2 2 0 Munc13 (mammalian uncoordinated) homology domain I_LWEQ PF01608.17 gi|385805433|ref|YP_005841831.1| - 0.52 10.5 7.8 0.76 10.0 5.1 2.2 2 0 0 2 2 2 0 I/LWEQ domain CdvA PF18822.1 gi|385805434|ref|YP_005841832.1| - 1.5e-36 124.9 12.0 2.4e-36 124.3 12.0 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain DUF1664 PF07889.12 gi|385805434|ref|YP_005841832.1| - 0.00016 21.7 5.5 0.00026 21.0 0.4 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) Prefoldin PF02996.17 gi|385805434|ref|YP_005841832.1| - 0.0019 18.1 3.5 0.0019 18.1 3.5 2.2 2 1 0 2 2 2 1 Prefoldin subunit SHOCT PF09851.9 gi|385805434|ref|YP_005841832.1| - 0.0023 17.6 2.6 0.0038 16.9 0.6 2.4 2 0 0 2 2 2 1 Short C-terminal domain DUF4618 PF15397.6 gi|385805434|ref|YP_005841832.1| - 0.0025 17.3 2.6 0.0025 17.3 2.6 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4618) DUF5082 PF16888.5 gi|385805434|ref|YP_005841832.1| - 0.0037 17.5 3.4 0.0037 17.5 3.4 3.0 3 1 1 4 4 4 1 Domain of unknown function (DUF5082) Prefoldin_2 PF01920.20 gi|385805434|ref|YP_005841832.1| - 0.0051 16.8 2.9 0.0051 16.8 2.9 2.5 2 1 1 3 3 3 1 Prefoldin subunit DUF4559 PF15112.6 gi|385805434|ref|YP_005841832.1| - 0.0068 16.1 5.2 0.0089 15.7 5.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) CorA PF01544.18 gi|385805434|ref|YP_005841832.1| - 0.0073 15.7 3.4 0.0088 15.4 3.4 1.2 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein B2 PF11473.8 gi|385805434|ref|YP_005841832.1| - 0.013 15.2 1.0 0.083 12.7 0.2 2.6 1 1 1 2 2 2 0 RNA binding protein B2 Peptidase_M91 PF14891.6 gi|385805434|ref|YP_005841832.1| - 0.042 14.2 0.5 0.057 13.7 0.5 1.3 1 0 0 1 1 1 0 Effector protein DUF1451 PF07295.11 gi|385805434|ref|YP_005841832.1| - 0.063 13.3 0.9 0.12 12.4 0.9 1.5 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF4094 PF13334.6 gi|385805434|ref|YP_005841832.1| - 0.073 13.5 0.4 0.073 13.5 0.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) GvpG PF05120.12 gi|385805434|ref|YP_005841832.1| - 0.13 12.3 2.4 5.4 7.1 0.1 2.5 1 1 1 2 2 2 0 Gas vesicle protein G DUF2746 PF10874.8 gi|385805434|ref|YP_005841832.1| - 0.18 12.2 1.1 0.38 11.2 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2746) MerR-DNA-bind PF09278.11 gi|385805434|ref|YP_005841832.1| - 0.29 11.7 4.1 0.35 11.4 0.6 2.2 2 0 0 2 2 2 0 MerR, DNA binding Fib_alpha PF08702.10 gi|385805434|ref|YP_005841832.1| - 0.31 11.2 6.4 0.4 10.9 1.3 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family FlxA PF14282.6 gi|385805434|ref|YP_005841832.1| - 0.58 10.2 5.5 0.17 11.9 1.7 1.9 2 1 0 2 2 2 0 FlxA-like protein V_ATPase_I PF01496.19 gi|385805434|ref|YP_005841832.1| - 0.66 7.8 3.5 0.83 7.5 3.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family YtxH PF12732.7 gi|385805434|ref|YP_005841832.1| - 1.1 9.9 4.6 5.7 7.5 4.6 2.3 1 1 0 1 1 1 0 YtxH-like protein BLOC1_2 PF10046.9 gi|385805434|ref|YP_005841832.1| - 2.1 8.7 12.3 0.82 10.0 3.7 2.9 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fzo_mitofusin PF04799.13 gi|385805434|ref|YP_005841832.1| - 2.2 7.8 5.8 0.57 9.7 1.2 2.2 2 1 1 3 3 3 0 fzo-like conserved region Mt_ATP-synt_D PF05873.12 gi|385805434|ref|YP_005841832.1| - 2.8 7.8 7.7 1.4 8.8 3.5 2.3 2 1 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) GCV_T PF01571.21 gi|385805435|ref|YP_005841833.1| - 9.9e-67 225.0 0.0 1.3e-66 224.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|385805435|ref|YP_005841833.1| - 4.3e-12 45.8 0.0 8.6e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain PHA_gran_rgn PF09650.10 gi|385805435|ref|YP_005841833.1| - 0.062 13.6 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) Thi4 PF01946.17 gi|385805436|ref|YP_005841834.1| - 2.7e-71 239.5 0.5 3.2e-71 239.3 0.5 1.0 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|385805436|ref|YP_005841834.1| - 4.3e-12 45.8 3.2 2.5e-05 23.6 1.2 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.24 gi|385805436|ref|YP_005841834.1| - 1.5e-09 37.9 0.4 1.6e-05 24.6 0.3 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|385805436|ref|YP_005841834.1| - 1.2e-07 31.9 0.9 2.5e-07 30.8 0.9 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|385805436|ref|YP_005841834.1| - 1.6e-07 30.9 0.1 2.2e-07 30.4 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385805436|ref|YP_005841834.1| - 4.2e-07 29.0 1.7 4.9e-06 25.5 1.2 2.1 1 1 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|385805436|ref|YP_005841834.1| - 1.2e-06 28.1 0.0 1.8e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|385805436|ref|YP_005841834.1| - 5.9e-05 22.5 0.0 0.00012 21.4 0.0 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|385805436|ref|YP_005841834.1| - 0.0002 20.7 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385805436|ref|YP_005841834.1| - 0.0015 19.1 0.4 0.0051 17.3 0.4 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|385805436|ref|YP_005841834.1| - 0.0016 18.5 0.0 0.004 17.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 gi|385805436|ref|YP_005841834.1| - 0.007 15.5 0.1 0.01 15.0 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A MAF_flag10 PF01973.18 gi|385805436|ref|YP_005841834.1| - 0.014 15.1 0.0 0.089 12.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF115 Lycopene_cycl PF05834.12 gi|385805436|ref|YP_005841834.1| - 0.014 14.4 0.1 0.022 13.8 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|385805436|ref|YP_005841834.1| - 0.015 15.3 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|385805436|ref|YP_005841834.1| - 0.025 13.4 0.3 0.041 12.7 0.3 1.4 1 1 1 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|385805436|ref|YP_005841834.1| - 0.039 13.3 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase K_oxygenase PF13434.6 gi|385805436|ref|YP_005841834.1| - 0.074 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) GCV_H PF01597.19 gi|385805437|ref|YP_005841835.1| - 2e-42 144.0 0.2 2.3e-42 143.7 0.2 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|385805437|ref|YP_005841835.1| - 3.6e-05 23.5 0.0 0.00034 20.4 0.1 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|385805437|ref|YP_005841835.1| - 8.2e-05 22.5 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 gi|385805437|ref|YP_005841835.1| - 0.012 15.4 0.1 0.057 13.2 0.1 2.1 1 1 1 2 2 2 0 Biotin-lipoyl like PAC2 PF09754.9 gi|385805438|ref|YP_005841836.1| - 4e-35 121.7 0.0 4.7e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family HSP20 PF00011.21 gi|385805439|ref|YP_005841837.1| - 1.1e-07 31.9 0.0 1.7e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|385805439|ref|YP_005841837.1| - 0.00052 19.5 0.0 0.00073 19.0 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA TFIIE_alpha PF02002.17 gi|385805439|ref|YP_005841837.1| - 0.015 15.1 0.7 2 8.3 0.1 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit LA-virus_coat PF09220.10 gi|385805439|ref|YP_005841837.1| - 0.039 12.6 0.0 0.041 12.5 0.0 1.1 1 0 0 1 1 1 0 L-A virus, major coat protein UBX PF00789.20 gi|385805439|ref|YP_005841837.1| - 0.057 13.6 0.1 0.09 13.0 0.1 1.3 1 0 0 1 1 1 0 UBX domain ATPase PF06745.13 gi|385805440|ref|YP_005841838.1| - 3.3e-21 75.7 0.1 4.1e-21 75.4 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|385805440|ref|YP_005841838.1| - 1.3e-08 33.9 0.3 1.8e-08 33.5 0.3 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.6 gi|385805440|ref|YP_005841838.1| - 2.2e-06 27.7 0.1 0.00026 21.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|385805440|ref|YP_005841838.1| - 6.1e-06 26.1 0.2 1e-05 25.3 0.2 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|385805440|ref|YP_005841838.1| - 2.7e-05 24.2 0.4 4e-05 23.7 0.4 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|385805440|ref|YP_005841838.1| - 0.00069 19.9 0.0 0.0012 19.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|385805440|ref|YP_005841838.1| - 0.0023 17.5 0.0 0.76 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|385805440|ref|YP_005841838.1| - 0.0042 17.5 0.1 0.01 16.2 0.1 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|385805440|ref|YP_005841838.1| - 0.0043 16.4 0.1 0.0066 15.8 0.1 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|385805440|ref|YP_005841838.1| - 0.0043 17.5 0.0 0.0055 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|385805440|ref|YP_005841838.1| - 0.0046 17.1 0.0 0.0062 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.7 gi|385805440|ref|YP_005841838.1| - 0.0083 15.1 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain DUF835 PF05763.12 gi|385805440|ref|YP_005841838.1| - 0.0087 15.8 0.4 1.2 8.8 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF835) ATP-synt_ab PF00006.25 gi|385805440|ref|YP_005841838.1| - 0.015 14.9 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.17 gi|385805440|ref|YP_005841838.1| - 0.018 14.8 0.0 0.062 13.0 0.0 1.8 2 1 0 2 2 2 0 IstB-like ATP binding protein Roc PF08477.13 gi|385805440|ref|YP_005841838.1| - 0.025 14.8 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Bac_DnaA PF00308.18 gi|385805440|ref|YP_005841838.1| - 0.026 14.4 0.2 0.038 13.8 0.2 1.2 1 0 0 1 1 1 0 Bacterial dnaA protein NTPase_1 PF03266.15 gi|385805440|ref|YP_005841838.1| - 0.032 14.2 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|385805440|ref|YP_005841838.1| - 0.038 14.4 0.0 0.12 12.7 0.0 1.7 1 1 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|385805440|ref|YP_005841838.1| - 0.045 14.3 0.0 0.099 13.2 0.0 1.4 1 1 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|385805440|ref|YP_005841838.1| - 0.054 13.4 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase Helicase_RecD PF05127.14 gi|385805440|ref|YP_005841838.1| - 0.056 13.3 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Helicase Thioredoxin_8 PF13905.6 gi|385805440|ref|YP_005841838.1| - 0.082 13.2 0.2 3.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Thioredoxin-like FtsK_SpoIIIE PF01580.18 gi|385805440|ref|YP_005841838.1| - 0.09 12.1 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|385805440|ref|YP_005841838.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.5 2 0 0 2 2 2 0 NACHT domain DUF354 PF04007.12 gi|385805441|ref|YP_005841839.1| - 1e-41 143.1 0.2 1.2e-41 142.9 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Spc42p PF11544.8 gi|385805441|ref|YP_005841839.1| - 0.53 10.3 3.2 0.28 11.2 0.5 2.0 2 0 0 2 2 2 0 Spindle pole body component Spc42p AP_endonuc_2 PF01261.24 gi|385805442|ref|YP_005841840.1| - 7.4e-12 45.2 0.0 1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Endonuclea_NS_2 PF13930.6 gi|385805442|ref|YP_005841840.1| - 0.042 13.9 0.4 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 DNA/RNA non-specific endonuclease FtsA PF14450.6 gi|385805442|ref|YP_005841840.1| - 0.046 14.1 0.1 0.084 13.3 0.1 1.5 1 1 0 1 1 1 0 Cell division protein FtsA RecG_N PF17190.4 gi|385805442|ref|YP_005841840.1| - 0.41 11.4 7.2 0.29 11.9 1.2 3.3 3 1 0 3 3 3 0 RecG N-terminal helical domain RNase_HII PF01351.18 gi|385805443|ref|YP_005841841.1| - 5.4e-43 147.1 0.5 6.2e-43 146.9 0.5 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF3942 PF13078.6 gi|385805443|ref|YP_005841841.1| - 0.032 14.5 1.4 0.045 14.1 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3942) TGS PF02824.21 gi|385805444|ref|YP_005841842.1| - 5.3e-20 71.2 0.0 1.1e-19 70.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|385805444|ref|YP_005841842.1| - 1.3e-18 67.0 3.8 2.4e-18 66.1 3.8 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|385805444|ref|YP_005841842.1| - 5e-11 42.7 0.0 2.2e-10 40.6 0.0 2.1 1 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|385805444|ref|YP_005841842.1| - 1.4e-06 28.0 0.2 6.5e-06 25.8 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|385805444|ref|YP_005841842.1| - 0.00013 21.4 0.1 0.007 15.8 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|385805444|ref|YP_005841842.1| - 0.00028 20.7 2.4 0.035 13.9 0.0 2.5 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|385805444|ref|YP_005841842.1| - 0.0012 18.4 0.1 3 7.3 0.0 3.0 2 1 1 3 3 3 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|385805444|ref|YP_005841842.1| - 0.012 15.1 0.2 0.14 11.6 0.0 2.5 2 1 0 2 2 2 0 ADP-ribosylation factor family Ub-RnfH PF03658.14 gi|385805444|ref|YP_005841842.1| - 0.019 15.3 0.0 0.056 13.8 0.0 1.8 1 0 0 1 1 1 0 RnfH family Ubiquitin ThiS PF02597.20 gi|385805444|ref|YP_005841842.1| - 0.027 15.1 0.1 8.8 7.1 0.0 3.2 2 1 0 2 2 2 0 ThiS family RsgA_GTPase PF03193.16 gi|385805444|ref|YP_005841842.1| - 0.052 13.4 1.6 1.1 9.1 0.3 2.5 2 1 0 2 2 2 0 RsgA GTPase Roc PF08477.13 gi|385805444|ref|YP_005841842.1| - 0.059 13.6 0.0 0.33 11.2 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase YchF-GTPase_C PF06071.13 gi|385805444|ref|YP_005841842.1| - 0.065 13.4 1.3 1.4 9.2 0.0 2.8 2 1 1 3 3 2 0 Protein of unknown function (DUF933) Trm112p PF03966.16 gi|385805445|ref|YP_005841843.1| - 2.5e-16 60.0 1.5 3.7e-16 59.5 1.5 1.3 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|385805445|ref|YP_005841843.1| - 0.55 10.5 5.0 0.59 10.4 0.1 2.8 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-C2H2_4 PF13894.6 gi|385805445|ref|YP_005841843.1| - 1.3 10.0 6.0 13 6.9 0.0 3.4 3 0 0 3 3 3 0 C2H2-type zinc finger zf-RING_4 PF14570.6 gi|385805445|ref|YP_005841843.1| - 1.8 8.4 7.3 1.3 8.9 2.7 2.3 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Prok-RING_4 PF14447.6 gi|385805445|ref|YP_005841843.1| - 9 6.2 9.6 10 6.0 1.2 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 4 PGM_PMM_I PF02878.16 gi|385805446|ref|YP_005841844.1| - 2.8e-40 137.2 0.0 6.7e-40 136.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|385805446|ref|YP_005841844.1| - 2.2e-25 89.3 0.0 5.1e-25 88.1 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|385805446|ref|YP_005841844.1| - 1.2e-20 73.8 0.0 2.2e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|385805446|ref|YP_005841844.1| - 3.7e-12 46.2 0.0 1.2e-11 44.6 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain OMPdecase PF00215.24 gi|385805447|ref|YP_005841845.1| - 2e-24 86.4 1.8 2.3e-24 86.2 1.8 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|385805447|ref|YP_005841845.1| - 0.00027 20.7 0.8 0.00065 19.5 0.4 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.17 gi|385805447|ref|YP_005841845.1| - 0.00028 20.4 0.4 0.00052 19.5 0.4 1.5 1 0 0 1 1 1 1 PcrB family Ribul_P_3_epim PF00834.19 gi|385805447|ref|YP_005841845.1| - 0.0011 18.4 1.1 0.0025 17.2 0.4 1.8 1 1 1 2 2 2 1 Ribulose-phosphate 3 epimerase family NanE PF04131.14 gi|385805447|ref|YP_005841845.1| - 0.0014 17.9 0.6 0.0025 17.1 0.3 1.6 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase 4HFCP_synth PF04476.13 gi|385805447|ref|YP_005841845.1| - 0.0037 17.0 0.1 0.0056 16.4 0.1 1.4 1 1 0 1 1 1 1 4-HFC-P synthase TMP-TENI PF02581.17 gi|385805447|ref|YP_005841845.1| - 0.01 15.2 0.3 0.019 14.3 0.3 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase TIP49 PF06068.13 gi|385805448|ref|YP_005841846.1| - 4.5e-141 470.1 1.4 6.3e-141 469.6 1.4 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|385805448|ref|YP_005841846.1| - 5.2e-20 71.3 0.4 6.8e-19 67.8 0.6 2.5 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|385805448|ref|YP_005841846.1| - 1.6e-10 41.6 2.1 4.8e-08 33.5 0.1 2.8 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385805448|ref|YP_005841846.1| - 7.5e-08 32.3 0.4 2.4e-05 24.1 0.1 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|385805448|ref|YP_005841846.1| - 5.6e-07 29.9 0.2 0.016 15.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|385805448|ref|YP_005841846.1| - 3.5e-05 24.2 0.3 0.00051 20.5 0.3 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|385805448|ref|YP_005841846.1| - 3.7e-05 23.3 0.3 0.00038 20.0 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region DnaB_C PF03796.15 gi|385805448|ref|YP_005841846.1| - 0.00024 20.6 0.2 0.00068 19.0 0.1 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|385805448|ref|YP_005841846.1| - 0.00037 20.3 0.0 0.00081 19.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|385805448|ref|YP_005841846.1| - 0.0015 19.0 0.1 0.0031 18.0 0.1 1.5 1 0 0 1 1 1 1 ABC transporter T2SSE PF00437.20 gi|385805448|ref|YP_005841846.1| - 0.0016 17.6 2.0 0.086 11.9 0.1 2.6 1 1 1 2 2 2 1 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|385805448|ref|YP_005841846.1| - 0.0017 18.1 0.2 0.024 14.3 0.1 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_23 PF13476.6 gi|385805448|ref|YP_005841846.1| - 0.0024 18.4 0.4 0.0024 18.4 0.4 1.7 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|385805448|ref|YP_005841846.1| - 0.0043 16.5 0.7 0.0089 15.5 0.1 1.8 2 0 0 2 2 1 1 PhoH-like protein AAA_28 PF13521.6 gi|385805448|ref|YP_005841846.1| - 0.0048 17.1 0.1 0.012 15.9 0.1 1.7 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|385805448|ref|YP_005841846.1| - 0.0049 16.9 1.0 0.018 15.0 0.2 2.2 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_33 PF13671.6 gi|385805448|ref|YP_005841846.1| - 0.006 16.8 0.1 0.015 15.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|385805448|ref|YP_005841846.1| - 0.0086 16.6 1.1 0.09 13.3 0.1 3.1 3 1 0 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|385805448|ref|YP_005841846.1| - 0.009 16.0 0.4 0.07 13.1 0.1 2.5 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|385805448|ref|YP_005841846.1| - 0.013 15.1 0.0 0.029 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain IPT PF01745.16 gi|385805448|ref|YP_005841846.1| - 0.018 14.4 0.0 0.05 13.0 0.0 1.7 1 0 0 1 1 1 0 Isopentenyl transferase Mg_chelatase PF01078.21 gi|385805448|ref|YP_005841846.1| - 0.02 14.3 0.4 0.093 12.1 0.1 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|385805448|ref|YP_005841846.1| - 0.021 15.2 0.0 0.055 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|385805448|ref|YP_005841846.1| - 0.034 14.2 0.1 0.07 13.1 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_2 PF07724.14 gi|385805448|ref|YP_005841846.1| - 0.042 14.0 0.2 0.22 11.6 0.2 2.3 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|385805448|ref|YP_005841846.1| - 0.044 13.7 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|385805448|ref|YP_005841846.1| - 0.1 11.8 0.0 0.21 10.8 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|385805448|ref|YP_005841846.1| - 0.15 11.2 0.1 0.33 10.0 0.1 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_19 PF13245.6 gi|385805448|ref|YP_005841846.1| - 0.46 10.8 1.9 7.9 6.8 1.9 2.3 1 1 0 1 1 1 0 AAA domain adh_short_C2 PF13561.6 gi|385805449|ref|YP_005841847.1| - 1.4e-41 142.6 0.0 2.1e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385805449|ref|YP_005841847.1| - 6.3e-27 94.3 0.0 7.7e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385805449|ref|YP_005841847.1| - 0.00067 19.6 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 KR domain DUF2194 PF09960.9 gi|385805449|ref|YP_005841847.1| - 0.013 13.9 0.8 0.36 9.1 0.2 2.0 1 1 1 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2194) THF_DHG_CYH_C PF02882.19 gi|385805449|ref|YP_005841847.1| - 0.041 13.2 0.1 0.78 9.0 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Spore_III_AB PF09548.10 gi|385805449|ref|YP_005841847.1| - 0.049 13.7 0.1 0.26 11.4 0.0 2.0 1 1 1 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) Mur_ligase PF01225.25 gi|385805449|ref|YP_005841847.1| - 0.1 12.9 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain DUF1192 PF06698.11 gi|385805450|ref|YP_005841848.1| - 0.0089 16.1 0.5 0.021 14.9 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1192) NLE PF08154.12 gi|385805450|ref|YP_005841848.1| - 0.01 16.4 0.1 0.023 15.2 0.1 1.6 1 0 0 1 1 1 0 NLE (NUC135) domain Usp PF00582.26 gi|385805451|ref|YP_005841849.1| - 6.7e-15 55.8 0.0 3.2e-13 50.4 0.0 2.1 1 1 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|385805451|ref|YP_005841849.1| - 0.015 15.0 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NAD_binding_7 PF13241.6 gi|385805451|ref|YP_005841849.1| - 0.026 15.0 0.2 0.23 11.9 0.2 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding RsgA_GTPase PF03193.16 gi|385805451|ref|YP_005841849.1| - 0.034 14.1 0.1 0.046 13.6 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase PGK PF00162.19 gi|385805452|ref|YP_005841850.1| - 1.2e-97 327.2 0.1 1.4e-97 327.0 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF4874 PF16173.5 gi|385805452|ref|YP_005841850.1| - 0.022 14.4 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4874) ResIII PF04851.15 gi|385805453|ref|YP_005841851.1| - 0.07 13.1 3.6 1.3 9.0 3.6 2.0 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit CS PF04969.16 gi|385805453|ref|YP_005841851.1| - 0.08 14.0 5.9 0.096 13.7 4.4 1.9 1 1 1 2 2 2 0 CS domain T_Ag_DNA_bind PF02217.16 gi|385805453|ref|YP_005841851.1| - 0.17 12.5 1.5 0.24 12.0 1.0 1.6 1 1 0 1 1 1 0 Origin of replication binding protein MecA_N PF05223.11 gi|385805453|ref|YP_005841851.1| - 2.4 8.5 10.4 1.4 9.2 2.8 3.1 1 1 2 3 3 3 0 NTF2-like N-terminal transpeptidase domain Vps39_1 PF10366.9 gi|385805454|ref|YP_005841852.1| - 0.09 13.1 11.0 0.43 10.9 0.3 3.8 3 2 0 3 3 3 0 Vacuolar sorting protein 39 domain 1 YfdX PF10938.8 gi|385805454|ref|YP_005841852.1| - 0.24 11.3 5.1 0.53 10.2 0.4 3.0 3 0 0 3 3 3 0 YfdX protein DUF3349 PF11829.8 gi|385805454|ref|YP_005841852.1| - 3.5 8.5 6.1 0.53 11.1 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3349) HTH_24 PF13412.6 gi|385805455|ref|YP_005841853.1| - 2.1e-12 46.4 0.4 4.6e-12 45.3 0.4 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|385805455|ref|YP_005841853.1| - 0.0001 22.2 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|385805455|ref|YP_005841853.1| - 0.00016 21.5 0.0 0.00028 20.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|385805455|ref|YP_005841853.1| - 0.00032 20.5 0.0 0.00071 19.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|385805455|ref|YP_005841853.1| - 0.00037 20.3 0.0 0.00066 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|385805455|ref|YP_005841853.1| - 0.00068 19.4 0.1 0.001 18.8 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|385805455|ref|YP_005841853.1| - 0.0011 18.8 0.0 0.024 14.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family AbiEi_4 PF13338.6 gi|385805455|ref|YP_005841853.1| - 0.0019 18.3 0.0 0.0044 17.1 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_20 PF12840.7 gi|385805455|ref|YP_005841853.1| - 0.0031 17.6 0.0 0.0049 16.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_39 PF14090.6 gi|385805455|ref|YP_005841853.1| - 0.0098 15.6 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain SieB PF14163.6 gi|385805455|ref|YP_005841853.1| - 0.094 12.2 0.1 0.094 12.2 0.1 2.3 2 1 0 2 2 2 0 Super-infection exclusion protein B HTH_IclR PF09339.10 gi|385805455|ref|YP_005841853.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Wzz PF02706.15 gi|385805455|ref|YP_005841853.1| - 3.2 8.1 5.4 1.7 9.0 0.8 2.4 2 0 0 2 2 2 0 Chain length determinant protein Sigma_reg_N PF13800.6 gi|385805455|ref|YP_005841853.1| - 3.8 7.9 10.2 14 6.0 0.0 3.6 3 1 0 3 3 3 0 Sigma factor regulator N-terminal DNA_pol_B PF00136.21 gi|385805456|ref|YP_005841854.1| - 5.8e-73 246.1 0.5 1.1e-72 245.2 0.5 1.5 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|385805456|ref|YP_005841854.1| - 7.8e-45 153.5 3.9 1.8e-42 145.7 3.9 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|385805456|ref|YP_005841854.1| - 1e-09 38.6 0.1 2.7e-09 37.3 0.1 1.8 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|385805456|ref|YP_005841854.1| - 9.1e-08 32.0 0.0 1.6e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|385805456|ref|YP_005841854.1| - 6.8e-06 25.2 0.9 5.9e-05 22.1 0.9 2.3 1 1 0 1 1 1 1 DNA polymerase type B, organellar and viral UPF0167 PF03691.14 gi|385805456|ref|YP_005841854.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) DUF5415 PF17436.2 gi|385805456|ref|YP_005841854.1| - 0.022 14.8 0.0 0.084 12.9 0.0 2.0 1 0 0 1 1 1 0 Family of unknown function (DUF5415) PNP_UDP_1 PF01048.20 gi|385805457|ref|YP_005841855.1| - 3.3e-40 137.8 0.0 3.8e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Methyltrans_SAM PF10672.9 gi|385805458|ref|YP_005841856.1| - 3.9e-16 59.0 0.0 6e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Cons_hypoth95 PF03602.15 gi|385805458|ref|YP_005841856.1| - 6.4e-13 48.7 0.0 1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|385805458|ref|YP_005841856.1| - 1.9e-09 37.5 0.0 3.2e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PUA_3 PF17785.1 gi|385805458|ref|YP_005841856.1| - 1.1e-06 28.3 0.1 4.4e-06 26.4 0.2 2.0 2 0 0 2 2 2 1 PUA-like domain MTS PF05175.14 gi|385805458|ref|YP_005841856.1| - 2.9e-05 23.7 0.0 4.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|385805458|ref|YP_005841856.1| - 0.00011 21.4 1.0 0.00028 20.1 1.0 1.6 1 1 0 1 1 1 1 O-methyltransferase PrmA PF06325.13 gi|385805458|ref|YP_005841856.1| - 0.00023 20.6 0.0 0.00036 20.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|385805458|ref|YP_005841856.1| - 0.00032 20.5 0.0 0.00048 19.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|385805458|ref|YP_005841856.1| - 0.0064 16.1 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_24 PF13578.6 gi|385805458|ref|YP_005841856.1| - 0.021 15.8 0.0 0.042 14.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|385805458|ref|YP_005841856.1| - 0.076 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_10 PF05971.12 gi|385805458|ref|YP_005841856.1| - 0.2 11.0 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase RimK PF08443.11 gi|385805459|ref|YP_005841857.1| - 5.7e-39 133.7 0.0 7.3e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|385805459|ref|YP_005841857.1| - 3.3e-19 68.9 0.0 4.9e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|385805459|ref|YP_005841857.1| - 1.3e-10 41.0 0.1 2.4e-05 23.7 0.0 3.1 1 1 1 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|385805459|ref|YP_005841857.1| - 2.4e-09 36.9 0.0 2.6e-05 23.6 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|385805459|ref|YP_005841857.1| - 2.8e-07 30.7 0.0 1.2e-06 28.7 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain Rimk_N PF18030.1 gi|385805459|ref|YP_005841857.1| - 0.0007 19.9 0.1 0.0016 18.8 0.1 1.7 1 0 0 1 1 1 1 RimK PreATP-grasp domain GARS_A PF01071.19 gi|385805459|ref|YP_005841857.1| - 0.0014 18.4 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|385805459|ref|YP_005841857.1| - 0.025 14.2 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain R2K_3 PF14243.6 gi|385805459|ref|YP_005841857.1| - 0.062 13.3 0.0 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Dala_Dala_lig_C PF07478.13 gi|385805459|ref|YP_005841857.1| - 0.11 12.0 0.0 1.8 8.0 0.0 2.5 1 1 1 2 2 2 0 D-ala D-ala ligase C-terminus Glycos_transf_4 PF00953.21 gi|385805460|ref|YP_005841858.1| - 8.9e-24 84.3 13.9 8.9e-24 84.3 13.9 2.5 3 1 0 3 3 3 1 Glycosyl transferase family 4 AA_permease_2 PF13520.6 gi|385805461|ref|YP_005841859.1| - 2e-41 142.2 58.7 3.3e-41 141.5 58.7 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385805461|ref|YP_005841859.1| - 6.7e-28 97.5 51.1 8.3e-28 97.2 51.1 1.0 1 0 0 1 1 1 1 Amino acid permease OTCace PF00185.24 gi|385805462|ref|YP_005841860.1| - 3.4e-53 179.9 0.0 5e-53 179.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|385805462|ref|YP_005841860.1| - 1.5e-48 164.5 0.0 2.2e-48 164.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UDPG_MGDP_dh_C PF03720.15 gi|385805462|ref|YP_005841860.1| - 0.019 15.4 0.0 0.053 13.9 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain OCD_Mu_crystall PF02423.15 gi|385805462|ref|YP_005841860.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family Amidinotransf PF02274.17 gi|385805463|ref|YP_005841861.1| - 5.8e-17 61.8 0.0 3.9e-16 59.1 0.0 2.1 1 1 0 1 1 1 1 Amidinotransferase CCG PF02754.16 gi|385805464|ref|YP_005841862.1| - 6.9e-09 35.8 0.0 7.2e-07 29.3 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|385805465|ref|YP_005841863.1| - 5.6e-12 45.9 2.7 7.7e-12 45.5 2.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385805465|ref|YP_005841863.1| - 1.1e-09 38.2 4.0 7.8e-05 22.7 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385805465|ref|YP_005841863.1| - 2.9e-09 37.4 4.3 0.00072 20.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|385805465|ref|YP_005841863.1| - 4.9e-09 36.6 3.5 1.1e-08 35.5 3.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385805465|ref|YP_005841863.1| - 5.3e-08 32.9 31.3 0.00016 21.8 12.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385805465|ref|YP_005841863.1| - 1.1e-07 31.4 12.8 0.00064 19.4 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385805465|ref|YP_005841863.1| - 3.7e-06 26.8 11.2 0.0023 17.9 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|385805465|ref|YP_005841863.1| - 8.4e-06 25.6 13.3 0.0038 17.2 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|385805465|ref|YP_005841863.1| - 2.9e-05 24.9 10.5 0.00064 20.6 11.5 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|385805465|ref|YP_005841863.1| - 8.3e-05 22.8 9.3 0.0028 18.1 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|385805465|ref|YP_005841863.1| - 0.00011 22.0 3.6 0.0029 17.3 0.2 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|385805465|ref|YP_005841863.1| - 0.00039 20.6 5.6 0.023 14.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385805465|ref|YP_005841863.1| - 0.00054 20.0 7.2 0.12 12.6 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|385805465|ref|YP_005841863.1| - 0.00092 20.0 6.5 0.21 12.4 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385805465|ref|YP_005841863.1| - 0.0026 18.6 16.4 0.12 13.4 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|385805465|ref|YP_005841863.1| - 0.0069 16.9 8.3 0.11 13.0 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|385805465|ref|YP_005841863.1| - 0.016 15.9 5.3 0.056 14.2 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD-oxidase_C PF02913.19 gi|385805466|ref|YP_005841864.1| - 1.6e-52 178.6 0.0 2.2e-52 178.2 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|385805466|ref|YP_005841864.1| - 3.6e-37 127.2 0.0 8.8e-37 125.9 0.0 1.7 1 0 0 1 1 1 1 FAD binding domain Succ_CoA_lig PF13607.6 gi|385805467|ref|YP_005841865.1| - 8.2e-44 148.8 1.0 4.3e-42 143.2 0.0 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|385805467|ref|YP_005841865.1| - 1.5e-20 73.8 0.4 6e-20 71.9 0.1 2.1 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|385805467|ref|YP_005841865.1| - 2.6e-12 47.3 2.4 1.1e-11 45.3 0.1 2.6 2 0 0 2 2 2 1 CoA binding domain SUa-2TM PF18179.1 gi|385805467|ref|YP_005841865.1| - 0.051 12.9 0.5 0.091 12.0 0.1 1.6 2 0 0 2 2 2 0 SMODS- and Ubiquitin system-associated 2TM effector domain POR PF01558.18 gi|385805468|ref|YP_005841866.1| - 1.1e-34 120.0 0.1 1.3e-34 119.8 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|385805469|ref|YP_005841867.1| - 4.3e-20 72.0 0.3 9.1e-20 71.0 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|385805469|ref|YP_005841867.1| - 1.8e-15 57.3 0.0 3.3e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|385805469|ref|YP_005841867.1| - 3.6e-11 42.4 13.0 2.8e-07 30.0 4.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|385805469|ref|YP_005841867.1| - 3.3e-08 33.5 8.4 9.4e-08 32.1 8.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|385805469|ref|YP_005841867.1| - 3.8e-08 33.1 0.3 5.7e-07 29.3 0.4 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.7 gi|385805469|ref|YP_005841867.1| - 3.9e-07 29.9 13.7 8.5e-05 22.5 3.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385805469|ref|YP_005841867.1| - 1.6e-06 28.6 10.1 0.00012 22.6 10.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385805469|ref|YP_005841867.1| - 1.1e-05 25.2 18.1 0.00099 19.1 2.3 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|385805469|ref|YP_005841867.1| - 4.1e-05 23.7 9.8 4.1e-05 23.7 9.8 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385805469|ref|YP_005841867.1| - 0.0005 20.1 11.5 0.0045 17.1 12.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385805469|ref|YP_005841867.1| - 0.0019 19.1 2.0 0.0019 19.1 2.0 2.7 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|385805469|ref|YP_005841867.1| - 0.037 14.6 6.3 0.7 10.5 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I IF-2 PF11987.8 gi|385805469|ref|YP_005841867.1| - 0.12 12.5 0.0 0.58 10.3 0.1 2.1 2 0 0 2 2 2 0 Translation-initiation factor 2 Fer4_15 PF13459.6 gi|385805469|ref|YP_005841867.1| - 0.24 12.2 9.7 3 8.7 0.6 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|385805469|ref|YP_005841867.1| - 1.1 9.9 12.1 79 3.9 12.2 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385805469|ref|YP_005841867.1| - 1.6 9.4 21.4 0.058 13.9 3.3 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|385805469|ref|YP_005841867.1| - 6.1 8.0 18.2 0.21 12.6 8.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain PmbA_TldD PF01523.16 gi|385805470|ref|YP_005841868.1| - 1.3e-30 107.2 0.4 1.9e-30 106.7 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|385805471|ref|YP_005841869.1| - 1.8e-44 152.7 0.2 2.3e-44 152.4 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Peptidase_M20 PF01546.28 gi|385805472|ref|YP_005841870.1| - 1.3e-38 132.8 0.0 1.7e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385805472|ref|YP_005841870.1| - 5.4e-23 81.0 0.1 1.1e-21 76.8 0.0 2.4 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|385805472|ref|YP_005841870.1| - 1.8e-08 34.3 0.0 3.3e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|385805472|ref|YP_005841870.1| - 0.013 14.5 0.0 8.9 5.2 0.0 3.0 3 0 0 3 3 3 0 M42 glutamyl aminopeptidase ACT PF01842.25 gi|385805473|ref|YP_005841871.1| - 6.8e-06 25.8 0.0 1.4e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|385805473|ref|YP_005841871.1| - 0.0021 18.6 0.0 0.0046 17.5 0.0 1.7 2 0 0 2 2 2 1 ACT domain MazE_antitoxin PF04014.18 gi|385805473|ref|YP_005841871.1| - 0.017 15.0 0.1 0.037 14.0 0.1 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin DUF72 PF01904.18 gi|385805474|ref|YP_005841872.1| - 1.4e-23 84.2 0.0 1.6e-23 84.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|385805474|ref|YP_005841872.1| - 0.018 14.5 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel PolC_DP2 PF03833.13 gi|385805475|ref|YP_005841873.1| - 0.015 13.2 0.9 0.015 13.2 0.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF4825 PF16107.5 gi|385805475|ref|YP_005841873.1| - 0.026 14.7 0.0 0.027 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4825) zf-C4_ClpX PF06689.13 gi|385805475|ref|YP_005841873.1| - 0.26 11.2 3.1 0.53 10.2 3.1 1.6 1 0 0 1 1 1 0 ClpX C4-type zinc finger Zn-ribbon_8 PF09723.10 gi|385805475|ref|YP_005841873.1| - 0.5 10.5 3.8 0.64 10.2 3.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain PCNA_N PF00705.18 gi|385805476|ref|YP_005841874.1| - 3.1e-14 52.8 4.2 3.7e-14 52.5 2.7 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|385805476|ref|YP_005841874.1| - 1.6e-09 37.6 0.2 2.3e-09 37.1 0.2 1.2 1 0 0 1 1 1 1 Rad9 Hus1 PF04005.12 gi|385805476|ref|YP_005841874.1| - 3.3e-06 26.4 0.1 3.7e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 Hus1-like protein Ribosomal_L25p PF01386.19 gi|385805476|ref|YP_005841874.1| - 0.015 15.8 0.1 0.039 14.4 0.1 1.8 1 1 0 1 1 1 0 Ribosomal L25p family MazE_antitoxin PF04014.18 gi|385805476|ref|YP_005841874.1| - 0.097 12.6 3.3 3.1 7.8 0.1 3.2 2 1 1 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Ribosomal_S3Ae PF01015.18 gi|385805477|ref|YP_005841875.1| - 2.2e-68 229.8 4.0 2.7e-68 229.6 4.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Abhydro_lipase PF04083.16 gi|385805477|ref|YP_005841875.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Pcc1 PF09341.10 gi|385805478|ref|YP_005841876.1| - 6.2e-05 23.1 0.1 7e-05 22.9 0.1 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF3802 PF12290.8 gi|385805480|ref|YP_005841878.1| - 0.023 15.2 0.8 0.026 15.0 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3802) DUF2387 PF09526.10 gi|385805481|ref|YP_005841879.1| - 0.039 14.1 1.0 0.059 13.5 0.5 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Nop10p PF04135.12 gi|385805481|ref|YP_005841879.1| - 0.066 13.3 0.4 0.12 12.4 0.4 1.4 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family NTP_transferase PF00483.23 gi|385805482|ref|YP_005841880.1| - 1.1e-30 107.0 0.0 1.5e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385805482|ref|YP_005841880.1| - 6.9e-10 39.5 0.0 9.6e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|385805482|ref|YP_005841880.1| - 6.3e-07 28.9 11.7 0.0078 15.9 3.3 3.6 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|385805482|ref|YP_005841880.1| - 0.0003 20.6 0.0 0.00055 19.7 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|385805482|ref|YP_005841880.1| - 0.028 12.6 1.1 0.073 11.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4954) DUF1264 PF06884.11 gi|385805482|ref|YP_005841880.1| - 0.15 11.6 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1264) Radical_SAM PF04055.21 gi|385805483|ref|YP_005841881.1| - 9.9e-15 55.3 0.0 4.1e-14 53.3 0.0 2.1 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|385805483|ref|YP_005841881.1| - 0.00025 21.0 0.0 0.00049 20.1 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Lipase_GDSL PF00657.22 gi|385805483|ref|YP_005841881.1| - 0.2 11.6 0.2 16 5.4 0.1 2.2 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase MMR_HSR1_C PF08438.10 gi|385805484|ref|YP_005841882.1| - 2.5e-35 121.4 0.3 4.1e-35 120.7 0.3 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|385805484|ref|YP_005841882.1| - 2.5e-20 72.7 0.0 1.1e-19 70.6 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|385805484|ref|YP_005841882.1| - 0.00011 21.7 0.2 0.003 17.1 0.2 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|385805484|ref|YP_005841882.1| - 0.041 13.4 0.7 14 5.1 0.0 3.3 2 1 1 3 3 3 0 Elongation factor Tu GTP binding domain TGS PF02824.21 gi|385805484|ref|YP_005841882.1| - 0.068 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 TGS domain DUF359 PF04019.12 gi|385805485|ref|YP_005841883.1| - 1.5e-28 99.0 0.4 1.8e-28 98.7 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) PglD_N PF17836.1 gi|385805485|ref|YP_005841883.1| - 0.022 15.4 0.2 0.38 11.4 0.0 2.6 2 1 1 3 3 3 0 PglD N-terminal domain Spt4 PF06093.13 gi|385805486|ref|YP_005841884.1| - 5.8e-15 55.2 0.2 6.8e-15 54.9 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-RRN7 PF11781.8 gi|385805486|ref|YP_005841884.1| - 0.001 18.7 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|385805486|ref|YP_005841884.1| - 0.0011 18.9 0.9 0.0015 18.5 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|385805486|ref|YP_005841884.1| - 0.0028 18.3 0.7 0.0037 18.0 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|385805486|ref|YP_005841884.1| - 0.0034 16.7 2.8 0.0046 16.3 2.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385805486|ref|YP_005841884.1| - 0.0077 15.9 1.2 0.012 15.4 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385805486|ref|YP_005841884.1| - 0.018 14.5 1.1 0.031 13.8 0.1 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C4H2 PF10146.9 gi|385805486|ref|YP_005841884.1| - 0.018 15.4 1.2 0.024 15.0 1.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein DUF35_N PF12172.8 gi|385805486|ref|YP_005841884.1| - 0.032 14.1 0.2 0.047 13.6 0.2 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2072 PF09845.9 gi|385805486|ref|YP_005841884.1| - 0.17 12.1 1.2 0.84 9.9 0.6 1.9 2 0 0 2 2 2 0 Zn-ribbon containing protein S1 PF00575.23 gi|385805487|ref|YP_005841885.1| - 4.1e-13 49.5 0.7 1.1e-12 48.1 0.7 1.9 1 1 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.17 gi|385805487|ref|YP_005841885.1| - 2.3e-07 31.1 0.2 5.9e-07 29.8 0.1 1.8 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 RNA_pol_Rbc25 PF08292.12 gi|385805487|ref|YP_005841885.1| - 0.00065 19.9 0.0 0.00088 19.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 EABR PF12180.8 gi|385805487|ref|YP_005841885.1| - 0.096 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 TSG101 and ALIX binding domain of CEP55 PIN_9 PF18477.1 gi|385805488|ref|YP_005841886.1| - 3.4e-21 75.7 0.3 4e-21 75.5 0.3 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|385805488|ref|YP_005841886.1| - 1.2e-07 32.1 0.1 1.4e-07 31.8 0.1 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|385805488|ref|YP_005841886.1| - 1.3e-07 31.9 4.0 1.4e-05 25.4 4.0 2.1 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|385805488|ref|YP_005841886.1| - 0.0089 16.5 1.0 0.016 15.7 1.0 1.4 1 1 0 1 1 1 1 PIN domain PilI PF10623.9 gi|385805488|ref|YP_005841886.1| - 0.021 15.0 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 Plasmid conjugative transfer protein PilI GTP_EFTU PF00009.27 gi|385805489|ref|YP_005841887.1| - 5.1e-29 101.2 0.0 3.5e-28 98.5 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|385805489|ref|YP_005841887.1| - 1.6e-25 89.2 0.3 4.4e-25 87.8 0.3 1.8 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|385805489|ref|YP_005841887.1| - 2.1e-07 31.2 2.2 7.3e-07 29.5 1.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|385805489|ref|YP_005841887.1| - 0.0041 17.0 0.2 0.036 14.0 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase MeaB PF03308.16 gi|385805489|ref|YP_005841887.1| - 0.0054 15.7 0.0 0.011 14.7 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|385805489|ref|YP_005841887.1| - 0.0098 16.0 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|385805489|ref|YP_005841887.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|385805489|ref|YP_005841887.1| - 0.2 11.2 0.5 13 5.3 0.1 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S6e PF01092.19 gi|385805490|ref|YP_005841888.1| - 3.8e-29 101.2 0.4 2.4e-28 98.6 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein S6e GTP_EFTU_D4 PF14578.6 gi|385805491|ref|YP_005841889.1| - 3.8e-36 122.9 1.2 1.6e-35 120.9 1.2 2.1 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|385805491|ref|YP_005841889.1| - 3e-29 102.0 0.0 8.7e-29 100.5 0.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|385805491|ref|YP_005841889.1| - 7.7e-22 77.4 2.3 7.7e-22 77.4 2.3 2.1 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|385805491|ref|YP_005841889.1| - 8.5e-12 45.3 3.2 9.9e-11 41.9 0.1 2.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|385805491|ref|YP_005841889.1| - 1.9e-05 24.7 0.4 0.00013 22.1 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase Arf PF00025.21 gi|385805491|ref|YP_005841889.1| - 0.0073 15.8 0.1 17 4.8 0.0 3.9 3 1 0 3 3 3 0 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|385805491|ref|YP_005841889.1| - 0.008 16.2 0.1 0.07 13.2 0.0 2.4 2 0 0 2 2 2 1 Dynamin family PduV-EutP PF10662.9 gi|385805491|ref|YP_005841889.1| - 0.017 14.9 0.1 0.76 9.5 0.0 3.0 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|385805491|ref|YP_005841889.1| - 0.036 14.3 0.0 0.075 13.2 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|385805491|ref|YP_005841889.1| - 0.056 13.4 0.8 0.66 9.9 0.1 3.1 4 1 0 4 4 4 0 RsgA GTPase AAA_23 PF13476.6 gi|385805491|ref|YP_005841889.1| - 0.064 13.8 1.4 18 5.8 0.0 2.6 2 1 0 2 2 2 0 AAA domain NDK PF00334.19 gi|385805492|ref|YP_005841890.1| - 7.3e-56 187.9 0.1 8.1e-56 187.8 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase RNA_pol_RpbG PF16992.5 gi|385805492|ref|YP_005841890.1| - 0.08 13.0 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G Ribosomal_L24e PF01246.20 gi|385805493|ref|YP_005841891.1| - 2.5e-19 69.2 0.6 2.7e-19 69.1 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|385805493|ref|YP_005841891.1| - 2.5e-05 24.1 0.3 3.2e-05 23.8 0.3 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ta0938 PF11494.8 gi|385805493|ref|YP_005841891.1| - 0.0036 17.6 0.3 0.0039 17.5 0.3 1.1 1 0 0 1 1 1 1 Ta0938 DUF2175 PF09943.9 gi|385805493|ref|YP_005841891.1| - 0.021 15.1 0.2 0.025 14.9 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) Ribosomal_S28e PF01200.18 gi|385805494|ref|YP_005841892.1| - 2.8e-31 107.3 3.3 3.3e-31 107.1 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|385805495|ref|YP_005841893.1| - 4.7e-31 106.4 0.5 6e-31 106.0 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|385805495|ref|YP_005841893.1| - 3.8e-06 26.7 0.1 5.6e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|385805495|ref|YP_005841893.1| - 0.0096 16.0 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 tRNA-synt_1c PF00749.21 gi|385805496|ref|YP_005841894.1| - 4.4e-72 242.6 0.0 4.4e-72 242.6 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|385805496|ref|YP_005841894.1| - 2e-18 66.9 0.0 6e-18 65.3 0.0 1.9 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain NEMO PF11577.8 gi|385805496|ref|YP_005841894.1| - 0.15 12.1 1.2 0.43 10.6 1.2 1.8 1 0 0 1 1 1 0 NF-kappa-B essential modulator NEMO Cas_Csa5 PF09702.10 gi|385805496|ref|YP_005841894.1| - 1.4 9.2 4.3 0.9 9.8 0.8 2.2 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csa5) DUF2118 PF09891.9 gi|385805497|ref|YP_005841895.1| - 1.2e-08 35.1 0.0 1.4e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) polyprenyl_synt PF00348.17 gi|385805498|ref|YP_005841896.1| - 1.2e-68 230.9 0.0 1.5e-68 230.6 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase FMN_dh PF01070.18 gi|385805499|ref|YP_005841897.1| - 4.3e-24 85.2 1.3 3.7e-18 65.7 1.1 2.2 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|385805499|ref|YP_005841897.1| - 1.5e-06 27.7 1.5 3.2e-06 26.5 1.5 1.5 1 1 0 1 1 1 1 Conserved region in glutamate synthase IMPDH PF00478.25 gi|385805499|ref|YP_005841897.1| - 0.00025 20.1 8.6 0.00035 19.7 0.7 3.5 3 1 1 4 4 4 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|385805499|ref|YP_005841897.1| - 0.047 13.2 2.5 0.13 11.7 0.1 2.6 3 1 0 3 3 3 0 Histidine biosynthesis protein DHO_dh PF01180.21 gi|385805499|ref|YP_005841897.1| - 0.35 10.0 3.3 0.36 10.0 1.2 1.9 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase AA_kinase PF00696.28 gi|385805500|ref|YP_005841898.1| - 3.3e-31 108.7 0.1 4.1e-31 108.4 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Ocnus PF05005.15 gi|385805500|ref|YP_005841898.1| - 0.062 13.4 0.1 0.11 12.7 0.1 1.3 1 0 0 1 1 1 0 Janus/Ocnus family (Ocnus) HTH_45 PF14947.6 gi|385805501|ref|YP_005841899.1| - 0.064 13.3 0.3 0.16 12.0 0.3 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix Memo PF01875.17 gi|385805502|ref|YP_005841900.1| - 4.5e-76 255.6 0.0 5e-76 255.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Ribosomal_S2 PF00318.20 gi|385805503|ref|YP_005841901.1| - 1.5e-27 96.2 0.9 2.7e-15 56.2 0.7 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 BRCT_3 PF18428.1 gi|385805503|ref|YP_005841901.1| - 0.12 12.5 0.0 0.32 11.1 0.0 1.7 2 0 0 2 2 2 0 BRCA1 C Terminus (BRCT) domain RNA_pol_N PF01194.17 gi|385805504|ref|YP_005841902.1| - 2.6e-30 104.5 0.1 2.9e-30 104.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|385805504|ref|YP_005841902.1| - 0.058 13.7 0.0 0.096 13.0 0.0 1.4 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|385805505|ref|YP_005841903.1| - 1.1e-30 106.6 0.1 1.2e-30 106.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 TrkA_C PF02080.21 gi|385805505|ref|YP_005841903.1| - 0.046 13.5 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 TrkA-C domain Mso1_Sec1_bdg PF14475.6 gi|385805505|ref|YP_005841903.1| - 0.16 11.5 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Sec1-binding region of Mso1 Ribosomal_L13 PF00572.18 gi|385805506|ref|YP_005841904.1| - 1.3e-12 48.0 0.8 1.5e-10 41.4 0.8 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L27A PF00828.19 gi|385805507|ref|YP_005841905.1| - 3.8e-05 24.4 2.3 5.7e-05 23.8 2.3 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|385805507|ref|YP_005841905.1| - 0.00021 20.7 0.0 0.00026 20.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e RNA_pol_A_bac PF01000.26 gi|385805508|ref|YP_005841906.1| - 2.1e-29 102.1 2.6 4.4e-29 101.1 0.0 2.3 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|385805508|ref|YP_005841906.1| - 2.5e-12 46.0 0.0 3.8e-12 45.5 0.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|385805509|ref|YP_005841907.1| - 2.7e-36 124.3 4.2 3.4e-36 124.0 4.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|385805510|ref|YP_005841908.1| - 1.8e-17 62.8 0.2 3.8e-17 61.7 0.2 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|385805510|ref|YP_005841908.1| - 1.7e-05 25.6 0.9 8.1e-05 23.5 0.3 2.1 2 1 0 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain PCMT PF01135.19 gi|385805510|ref|YP_005841908.1| - 0.028 14.2 0.1 0.037 13.8 0.1 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ribosomal_S13 PF00416.22 gi|385805511|ref|YP_005841909.1| - 1.5e-42 145.0 0.3 1.8e-42 144.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 MatE PF01554.18 gi|385805512|ref|YP_005841910.1| - 5.5e-51 172.4 32.4 1.7e-28 99.3 11.9 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|385805512|ref|YP_005841910.1| - 0.00048 20.2 42.0 0.017 15.2 18.6 4.1 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Peptidase_M42 PF05343.14 gi|385805513|ref|YP_005841911.1| - 1.4e-102 342.7 0.3 1.6e-102 342.5 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|385805513|ref|YP_005841911.1| - 3.2e-07 30.3 0.1 5.2e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|385805513|ref|YP_005841911.1| - 6.6e-06 25.2 0.0 1.1e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|385805513|ref|YP_005841911.1| - 0.00089 19.0 0.0 0.024 14.3 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|385805514|ref|YP_005841912.1| - 1.2e-35 123.1 0.2 1.7e-35 122.6 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|385805514|ref|YP_005841912.1| - 3.5e-16 59.1 0.2 1.6e-15 56.9 0.0 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain PKcGMP_CC PF16808.5 gi|385805514|ref|YP_005841912.1| - 1.8 8.5 6.6 0.48 10.3 2.6 2.1 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase SSF PF00474.17 gi|385805515|ref|YP_005841913.1| - 4.2e-18 65.4 33.3 9.1e-18 64.3 33.3 1.6 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.8 gi|385805516|ref|YP_005841914.1| - 2.1e-12 46.8 5.5 2.9e-12 46.3 5.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Peptidase_S8 PF00082.22 gi|385805517|ref|YP_005841915.1| - 9.4e-35 120.3 0.7 1.6e-34 119.5 0.7 1.3 1 0 0 1 1 1 1 Subtilase family DUF2141 PF09912.9 gi|385805517|ref|YP_005841915.1| - 0.41 10.6 1.8 0.51 10.3 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) Baculo_PEP_C PF04513.12 gi|385805518|ref|YP_005841916.1| - 8.2e-07 29.1 41.2 3.8e-06 27.0 26.6 2.6 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|385805518|ref|YP_005841916.1| - 6.6e-05 22.9 3.3 6.6e-05 22.9 3.3 2.7 2 1 1 3 3 2 1 Protein of unknown function (DUF1664) DUF3584 PF12128.8 gi|385805518|ref|YP_005841916.1| - 0.00026 18.7 7.2 0.00035 18.3 7.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MbeD_MobD PF04899.12 gi|385805518|ref|YP_005841916.1| - 0.00052 20.1 9.1 0.013 15.6 1.2 2.7 2 1 1 3 3 3 2 MbeD/MobD like COG2 PF06148.11 gi|385805518|ref|YP_005841916.1| - 0.00062 19.9 8.9 0.0016 18.5 3.0 2.8 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.11 gi|385805518|ref|YP_005841916.1| - 0.00075 18.5 6.3 0.0011 17.9 6.3 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein SF-assemblin PF06705.11 gi|385805518|ref|YP_005841916.1| - 0.00091 18.6 6.5 0.0017 17.7 6.5 1.3 1 0 0 1 1 1 1 SF-assemblin/beta giardin LPP PF04728.13 gi|385805518|ref|YP_005841916.1| - 0.00099 19.4 37.5 0.052 13.9 11.3 4.5 1 1 3 4 4 4 2 Lipoprotein leucine-zipper Apolipoprotein PF01442.18 gi|385805518|ref|YP_005841916.1| - 0.0015 18.4 9.2 0.0024 17.8 9.2 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF948 PF06103.11 gi|385805518|ref|YP_005841916.1| - 0.0017 18.6 4.8 0.0017 18.6 4.8 4.1 2 1 3 5 5 3 1 Bacterial protein of unknown function (DUF948) Alanine_zipper PF11839.8 gi|385805518|ref|YP_005841916.1| - 0.0025 18.1 43.7 0.031 14.6 11.7 2.9 2 1 1 3 3 2 2 Alanine-zipper, major outer membrane lipoprotein IFT57 PF10498.9 gi|385805518|ref|YP_005841916.1| - 0.0043 16.1 7.8 0.0069 15.4 7.4 1.5 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 Prominin PF05478.11 gi|385805518|ref|YP_005841916.1| - 0.0048 14.9 12.6 0.0073 14.3 12.6 1.2 1 0 0 1 1 1 1 Prominin Laminin_I PF06008.14 gi|385805518|ref|YP_005841916.1| - 0.0055 16.5 16.9 0.0057 16.4 15.6 1.6 1 1 0 1 1 1 1 Laminin Domain I EzrA PF06160.12 gi|385805518|ref|YP_005841916.1| - 0.011 14.0 3.8 0.016 13.4 3.8 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA FlaC_arch PF05377.11 gi|385805518|ref|YP_005841916.1| - 0.02 15.3 7.0 0.054 13.9 0.4 3.4 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Fez1 PF06818.15 gi|385805518|ref|YP_005841916.1| - 0.076 13.5 3.9 0.11 12.9 3.9 1.1 1 0 0 1 1 1 0 Fez1 CorA PF01544.18 gi|385805518|ref|YP_005841916.1| - 0.15 11.3 4.0 0.31 10.3 4.0 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MAGE PF01454.19 gi|385805518|ref|YP_005841916.1| - 0.21 11.3 4.0 0.37 10.4 4.0 1.3 1 0 0 1 1 1 0 MAGE family CENP-F_leu_zip PF10473.9 gi|385805518|ref|YP_005841916.1| - 0.23 11.5 2.7 3.9 7.5 0.4 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DHR10 PF18595.1 gi|385805518|ref|YP_005841916.1| - 0.24 11.5 3.3 0.42 10.7 0.6 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain BLOC1_2 PF10046.9 gi|385805518|ref|YP_005841916.1| - 0.27 11.5 12.3 0.86 9.9 5.1 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|385805518|ref|YP_005841916.1| - 0.29 11.6 17.6 9.4 6.8 8.6 3.9 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein Syntaxin_2 PF14523.6 gi|385805518|ref|YP_005841916.1| - 0.29 11.5 15.6 0.31 11.4 6.0 2.5 1 1 1 2 2 2 0 Syntaxin-like protein Myosin_tail_1 PF01576.19 gi|385805518|ref|YP_005841916.1| - 0.3 8.8 0.8 0.44 8.3 0.8 1.1 1 0 0 1 1 1 0 Myosin tail AIP3 PF03915.13 gi|385805518|ref|YP_005841916.1| - 0.31 10.1 7.7 0.49 9.4 7.7 1.3 1 0 0 1 1 1 0 Actin interacting protein 3 YscO PF07321.12 gi|385805518|ref|YP_005841916.1| - 0.31 11.0 5.3 0.28 11.2 1.5 2.1 1 1 1 2 2 2 0 Type III secretion protein YscO Vip3A_N PF12495.8 gi|385805518|ref|YP_005841916.1| - 0.42 10.5 12.5 0.36 10.7 10.4 1.8 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal DUF677 PF05055.12 gi|385805518|ref|YP_005841916.1| - 0.46 9.3 11.5 0.83 8.5 3.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF677) SOGA PF11365.8 gi|385805518|ref|YP_005841916.1| - 0.5 11.5 1.5 0.58 11.3 0.4 1.6 2 0 0 2 2 1 0 Protein SOGA YlqD PF11068.8 gi|385805518|ref|YP_005841916.1| - 0.5 10.7 7.1 0.51 10.7 3.6 2.2 1 1 1 2 2 2 0 YlqD protein FmiP_Thoc5 PF09766.9 gi|385805518|ref|YP_005841916.1| - 0.57 9.4 8.9 0.87 8.8 8.9 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 DUF4407 PF14362.6 gi|385805518|ref|YP_005841916.1| - 0.59 9.4 18.8 2.6 7.3 18.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) COG5 PF10392.9 gi|385805518|ref|YP_005841916.1| - 0.62 10.2 19.3 0.13 12.5 3.5 3.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 TolA_bind_tri PF16331.5 gi|385805518|ref|YP_005841916.1| - 0.62 10.2 6.8 0.13 12.3 0.5 2.7 1 1 2 3 3 3 0 TolA binding protein trimerisation Prefoldin PF02996.17 gi|385805518|ref|YP_005841916.1| - 0.62 10.0 5.4 9.5 6.2 0.0 2.9 2 1 1 3 3 2 0 Prefoldin subunit Phage_GP20 PF06810.11 gi|385805518|ref|YP_005841916.1| - 0.79 9.5 5.1 0.95 9.3 2.9 2.1 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF812 PF05667.11 gi|385805518|ref|YP_005841916.1| - 0.83 8.5 9.8 1.2 8.0 9.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) BAR_3 PF16746.5 gi|385805518|ref|YP_005841916.1| - 0.94 9.1 6.6 1.5 8.5 6.6 1.2 1 0 0 1 1 1 0 BAR domain of APPL family DUF745 PF05335.13 gi|385805518|ref|YP_005841916.1| - 0.95 9.1 30.6 0.2 11.4 13.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF4618 PF15397.6 gi|385805518|ref|YP_005841916.1| - 1 8.7 3.7 2.1 7.7 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) T3SSipB PF16535.5 gi|385805518|ref|YP_005841916.1| - 1.2 9.6 28.3 0.19 12.2 22.6 2.1 1 1 1 2 2 2 0 Type III cell invasion protein SipB DASH_Spc19 PF08287.11 gi|385805518|ref|YP_005841916.1| - 1.3 8.9 10.2 28 4.6 10.5 2.1 1 1 0 1 1 1 0 Spc19 Vps51 PF08700.11 gi|385805518|ref|YP_005841916.1| - 1.7 8.8 9.4 1.8 8.7 5.1 2.7 2 1 1 3 3 3 0 Vps51/Vps67 Filament PF00038.21 gi|385805518|ref|YP_005841916.1| - 1.7 8.1 8.1 12 5.3 8.1 1.9 1 1 0 1 1 1 0 Intermediate filament protein DUF842 PF05811.13 gi|385805518|ref|YP_005841916.1| - 2.1 8.1 5.6 8.4 6.1 0.1 2.3 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF842) ECR1_N PF14382.6 gi|385805518|ref|YP_005841916.1| - 2.1 8.2 7.0 4.8 7.1 3.6 3.1 3 0 0 3 3 2 0 Exosome complex exonuclease RRP4 N-terminal region ATP-synt_D PF01813.17 gi|385805518|ref|YP_005841916.1| - 2.3 8.0 6.9 0.91 9.3 1.9 2.6 3 0 0 3 3 3 0 ATP synthase subunit D FliJ PF02050.16 gi|385805518|ref|YP_005841916.1| - 2.3 8.4 9.5 2.6 8.3 0.4 2.4 2 1 0 2 2 2 0 Flagellar FliJ protein DotU PF09850.9 gi|385805518|ref|YP_005841916.1| - 2.9 7.6 4.3 18 4.9 0.4 2.3 1 1 1 2 2 2 0 Type VI secretion system protein DotU Tropomyosin_1 PF12718.7 gi|385805518|ref|YP_005841916.1| - 2.9 8.0 6.6 7 6.8 1.5 2.2 1 1 2 3 3 3 0 Tropomyosin like Seryl_tRNA_N PF02403.22 gi|385805518|ref|YP_005841916.1| - 3.6 7.9 7.6 3.7 7.8 3.6 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.12 gi|385805518|ref|YP_005841916.1| - 3.8 7.6 21.6 3.1 7.9 15.3 2.3 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.10 gi|385805518|ref|YP_005841916.1| - 3.8 7.7 14.1 0.67 10.1 6.6 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family MscS_porin PF12795.7 gi|385805518|ref|YP_005841916.1| - 4 6.9 32.2 11 5.5 31.5 1.9 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain CCDC144C PF14915.6 gi|385805518|ref|YP_005841916.1| - 4.2 6.4 9.7 6.7 5.7 9.7 1.3 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region Spc24 PF08286.11 gi|385805518|ref|YP_005841916.1| - 4.2 7.6 14.3 3.6 7.9 1.4 3.7 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Snapin_Pallidin PF14712.6 gi|385805518|ref|YP_005841916.1| - 4.4 7.8 10.4 3.8 8.0 3.7 2.4 1 1 1 2 2 2 0 Snapin/Pallidin HisKA_3 PF07730.13 gi|385805518|ref|YP_005841916.1| - 4.7 7.8 6.2 21 5.7 2.2 2.5 2 0 0 2 2 2 0 Histidine kinase T7SS_ESX_EspC PF10824.8 gi|385805518|ref|YP_005841916.1| - 4.9 7.7 32.4 0.99 9.9 1.5 3.4 2 1 1 3 3 3 0 Excreted virulence factor EspC, type VII ESX diderm CCDC84 PF14968.6 gi|385805518|ref|YP_005841916.1| - 5 6.6 8.5 7.8 6.0 8.5 1.2 1 0 0 1 1 1 0 Coiled coil protein 84 DASH_Duo1 PF08651.10 gi|385805518|ref|YP_005841916.1| - 6.8 6.5 10.2 1.5 8.6 3.9 2.7 1 1 1 2 2 2 0 DASH complex subunit Duo1 WEMBL PF05701.11 gi|385805518|ref|YP_005841916.1| - 7.9 5.0 15.2 11 4.6 15.2 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light SKA1 PF07160.12 gi|385805518|ref|YP_005841916.1| - 8 6.2 13.1 41 3.9 13.1 1.9 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 1 RasGAP_C PF03836.15 gi|385805518|ref|YP_005841916.1| - 8.9 6.5 7.8 21 5.2 0.4 2.5 1 1 1 2 2 2 0 RasGAP C-terminus RHH_3 PF12651.7 gi|385805519|ref|YP_005841917.1| - 0.00031 20.6 0.1 0.0011 18.9 0.1 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix domain MatP_C PF17414.2 gi|385805520|ref|YP_005841918.1| - 0.0096 16.1 0.1 0.059 13.6 0.0 2.1 2 0 0 2 2 2 1 MatP C-terminal ribbon-helix-helix domain CopG_antitoxin PF12441.8 gi|385805520|ref|YP_005841918.1| - 0.066 13.8 0.0 0.19 12.3 0.0 1.8 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system RHH_3 PF12651.7 gi|385805520|ref|YP_005841918.1| - 0.18 11.8 0.1 0.18 11.8 0.1 2.3 3 0 0 3 3 3 0 Ribbon-helix-helix domain Isochorismatase PF00857.20 gi|385805521|ref|YP_005841919.1| - 5.8e-46 156.9 0.0 6.4e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Ku_PK_bind PF08785.11 gi|385805521|ref|YP_005841919.1| - 0.052 13.7 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 Ku C terminal domain like HD PF01966.22 gi|385805522|ref|YP_005841920.1| - 2.7e-12 47.0 2.0 2.7e-12 47.0 2.0 1.8 2 0 0 2 2 2 1 HD domain UPF0047 PF01894.17 gi|385805523|ref|YP_005841921.1| - 2e-33 115.0 0.0 2.3e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Lactamase_B PF00753.27 gi|385805524|ref|YP_005841922.1| - 7.8e-25 88.0 0.0 9.5e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385805524|ref|YP_005841922.1| - 0.00037 20.1 0.0 0.0005 19.6 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Peptidase_U57 PF05582.12 gi|385805524|ref|YP_005841922.1| - 0.17 11.1 0.0 0.58 9.4 0.0 1.7 2 0 0 2 2 2 0 YabG peptidase U57 DUF2101 PF09874.9 gi|385805525|ref|YP_005841923.1| - 9.4 5.9 13.0 0.67 9.6 8.0 1.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2101) FCH PF00611.23 gi|385805526|ref|YP_005841924.1| - 0.046 14.0 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 Fes/CIP4, and EFC/F-BAR homology domain NUDIX PF00293.28 gi|385805527|ref|YP_005841925.1| - 3.1e-19 69.3 0.0 3.7e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain WASH_WAHD PF11945.8 gi|385805527|ref|YP_005841925.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 WAHD domain of WASH complex FMN_red PF03358.15 gi|385805528|ref|YP_005841926.1| - 3e-32 111.5 0.0 4.6e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|385805528|ref|YP_005841926.1| - 1.2e-13 51.2 0.0 1.8e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold T6SS_VasJ PF16989.5 gi|385805528|ref|YP_005841926.1| - 0.25 10.8 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ Polysacc_synt PF01943.17 gi|385805529|ref|YP_005841927.1| - 1.6e-16 60.5 57.5 1e-15 57.9 31.5 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|385805529|ref|YP_005841927.1| - 8e-12 45.4 43.7 4e-07 30.2 18.9 4.0 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|385805529|ref|YP_005841927.1| - 0.00022 20.0 39.7 0.00034 19.4 39.0 1.9 1 1 0 1 1 1 1 Lipid II flippase MurJ PAP2 PF01569.21 gi|385805530|ref|YP_005841928.1| - 3.5e-19 68.9 2.1 3.5e-19 68.9 2.1 1.7 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|385805530|ref|YP_005841928.1| - 2.8e-09 36.9 3.0 2.3e-08 33.9 3.0 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|385805530|ref|YP_005841928.1| - 0.0091 16.5 1.4 0.0091 16.5 1.4 2.1 2 1 0 2 2 2 1 PAP2 superfamily C-terminal Aminotran_1_2 PF00155.21 gi|385805531|ref|YP_005841929.1| - 1.6e-05 24.3 0.0 6.8e-05 22.2 0.0 1.9 1 1 1 2 2 2 1 Aminotransferase class I and II LMBR1 PF04791.16 gi|385805532|ref|YP_005841930.1| - 1e-05 24.7 0.0 1.2e-05 24.5 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein Phage_holin_3_6 PF07332.11 gi|385805532|ref|YP_005841930.1| - 0.0075 16.3 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2254 PF10011.9 gi|385805532|ref|YP_005841930.1| - 0.026 13.3 0.1 0.057 12.2 0.1 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2254) Neuregulin PF02158.15 gi|385805532|ref|YP_005841930.1| - 0.099 12.0 3.1 0.13 11.6 3.1 1.1 1 0 0 1 1 1 0 Neuregulin intracellular region DUF4168 PF13767.6 gi|385805532|ref|YP_005841930.1| - 0.16 13.2 7.4 0.27 12.4 7.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4168) O-antigen_lig PF13425.6 gi|385805532|ref|YP_005841930.1| - 0.7 8.6 6.7 1.1 7.9 6.7 1.3 1 1 0 1 1 1 0 O-antigen ligase like membrane protein bact-PGI_C PF10432.9 gi|385805533|ref|YP_005841931.1| - 5e-30 104.5 0.0 2.7e-28 98.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|385805533|ref|YP_005841931.1| - 1.2e-07 31.6 0.8 4.9e-06 26.4 0.2 2.9 2 2 1 3 3 3 1 SIS domain MTS PF05175.14 gi|385805534|ref|YP_005841932.1| - 4.3e-38 130.5 0.0 5.1e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|385805534|ref|YP_005841932.1| - 6e-10 39.0 0.1 6.4e-10 38.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.9 gi|385805534|ref|YP_005841932.1| - 2.8e-09 36.9 0.1 4.9e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|385805534|ref|YP_005841932.1| - 2.3e-08 34.1 0.6 4.1e-08 33.3 0.6 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805534|ref|YP_005841932.1| - 2.1e-07 30.8 0.0 3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|385805534|ref|YP_005841932.1| - 2.4e-07 30.7 0.1 3e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|385805534|ref|YP_005841932.1| - 2.5e-07 31.3 0.0 3.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385805534|ref|YP_005841932.1| - 5.6e-05 23.8 0.0 9.1e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805534|ref|YP_005841932.1| - 7.9e-05 22.6 0.0 9.8e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385805534|ref|YP_005841932.1| - 0.00086 19.9 0.0 0.0012 19.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|385805534|ref|YP_005841932.1| - 0.0023 17.2 0.0 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|385805534|ref|YP_005841932.1| - 0.0049 16.5 0.0 0.006 16.2 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 gi|385805534|ref|YP_005841932.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G rRNA_methylase PF06962.12 gi|385805534|ref|YP_005841932.1| - 0.012 15.6 1.0 0.46 10.5 1.0 2.1 1 1 0 1 1 1 0 Putative rRNA methylase Methyltransf_15 PF09445.10 gi|385805534|ref|YP_005841932.1| - 0.019 14.6 0.1 0.027 14.0 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TrmK PF04816.12 gi|385805534|ref|YP_005841932.1| - 0.026 14.1 0.6 0.036 13.6 0.6 1.3 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase TruB_C_2 PF16198.5 gi|385805535|ref|YP_005841933.1| - 2.6e-24 85.2 0.2 7.1e-24 83.7 0.0 1.8 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|385805535|ref|YP_005841933.1| - 2.8e-09 37.5 0.0 2.2e-07 31.4 0.0 2.7 1 1 1 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) UPF0113 PF03657.13 gi|385805535|ref|YP_005841933.1| - 5.9e-05 23.2 0.3 0.0012 19.1 0.0 2.4 2 0 0 2 2 2 1 UPF0113 PUA domain PUA PF01472.20 gi|385805535|ref|YP_005841933.1| - 0.00015 21.7 0.0 0.00038 20.4 0.0 1.7 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|385805536|ref|YP_005841934.1| - 1.4e-11 44.3 0.1 2e-11 43.8 0.1 1.3 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB_N PF01509.18 gi|385805536|ref|YP_005841934.1| - 0.056 13.8 0.5 0.089 13.2 0.5 1.3 1 0 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) Ribosomal_L14e PF01929.17 gi|385805537|ref|YP_005841935.1| - 0.003 18.0 0.1 0.004 17.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|385805537|ref|YP_005841935.1| - 0.054 13.5 0.5 0.097 12.7 0.5 1.4 1 0 0 1 1 1 0 KOW motif XisI PF08869.11 gi|385805537|ref|YP_005841935.1| - 0.064 13.6 0.0 0.077 13.4 0.0 1.1 1 0 0 1 1 1 0 XisI protein Cytidylate_kin2 PF13189.6 gi|385805538|ref|YP_005841936.1| - 1.2e-15 58.1 0.8 9.4e-14 51.9 0.8 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|385805538|ref|YP_005841936.1| - 1.3e-15 58.1 0.0 1.8e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|385805538|ref|YP_005841936.1| - 2e-15 57.4 0.0 6.2e-15 55.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|385805538|ref|YP_005841936.1| - 8.6e-15 55.0 3.5 3e-07 30.4 0.6 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|385805538|ref|YP_005841936.1| - 6.7e-07 29.6 0.1 1.7e-05 25.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|385805538|ref|YP_005841936.1| - 5.2e-05 23.4 0.2 0.00084 19.5 0.0 2.2 2 1 0 2 2 2 1 Adenylate kinase dNK PF01712.19 gi|385805538|ref|YP_005841936.1| - 0.0001 22.2 1.5 0.096 12.5 0.1 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Zeta_toxin PF06414.12 gi|385805538|ref|YP_005841936.1| - 0.0056 16.0 0.8 0.14 11.4 0.1 2.6 3 0 0 3 3 3 1 Zeta toxin TsaE PF02367.17 gi|385805538|ref|YP_005841936.1| - 0.0061 16.6 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad17 PF03215.15 gi|385805538|ref|YP_005841936.1| - 0.0088 16.0 0.0 0.02 14.8 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain ATPase_2 PF01637.18 gi|385805538|ref|YP_005841936.1| - 0.0099 15.8 1.4 0.026 14.4 1.4 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea SKI PF01202.22 gi|385805538|ref|YP_005841936.1| - 0.014 15.5 0.4 0.024 14.8 0.4 1.6 1 1 0 1 1 1 0 Shikimate kinase AAA_28 PF13521.6 gi|385805538|ref|YP_005841936.1| - 0.024 14.9 0.1 0.041 14.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|385805538|ref|YP_005841936.1| - 0.027 14.9 0.0 0.054 13.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|385805538|ref|YP_005841936.1| - 0.035 13.7 0.0 0.42 10.2 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|385805538|ref|YP_005841936.1| - 0.039 13.9 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PRK PF00485.18 gi|385805538|ref|YP_005841936.1| - 0.043 13.5 0.7 0.37 10.5 0.2 2.2 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family CoaE PF01121.20 gi|385805538|ref|YP_005841936.1| - 0.049 13.3 0.3 0.51 10.0 0.0 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase PhoH PF02562.16 gi|385805538|ref|YP_005841936.1| - 0.052 13.0 0.2 0.088 12.3 0.1 1.4 1 1 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 gi|385805538|ref|YP_005841936.1| - 0.054 13.9 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|385805538|ref|YP_005841936.1| - 0.085 12.6 0.1 0.26 11.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|385805538|ref|YP_005841936.1| - 0.092 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|385805538|ref|YP_005841936.1| - 0.13 11.3 0.4 0.3 10.1 0.2 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|385805538|ref|YP_005841936.1| - 0.14 12.5 0.1 0.33 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain IPT PF01745.16 gi|385805538|ref|YP_005841936.1| - 0.19 11.1 3.3 0.48 9.8 0.2 2.2 1 1 1 2 2 2 0 Isopentenyl transferase AAA_23 PF13476.6 gi|385805538|ref|YP_005841936.1| - 0.44 11.0 0.2 0.44 11.0 0.2 2.0 2 1 0 2 2 2 0 AAA domain Ribosomal_L34e PF01199.18 gi|385805539|ref|YP_005841937.1| - 8.8e-11 42.0 0.1 9.5e-11 41.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Gin PF10764.9 gi|385805539|ref|YP_005841937.1| - 0.036 14.0 0.0 0.05 13.6 0.0 1.3 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin DUF4428 PF14471.6 gi|385805539|ref|YP_005841937.1| - 0.04 13.8 0.1 0.048 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) AAA_17 PF13207.6 gi|385805540|ref|YP_005841938.1| - 8.4e-36 123.4 0.1 1.2e-35 122.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|385805540|ref|YP_005841938.1| - 8.4e-12 45.8 0.0 1.2e-11 45.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385805540|ref|YP_005841938.1| - 1.3e-06 28.9 0.0 4.8e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|385805540|ref|YP_005841938.1| - 1.4e-05 25.4 0.0 2.5e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385805540|ref|YP_005841938.1| - 2.3e-05 24.7 0.0 5.8e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|385805540|ref|YP_005841938.1| - 0.00014 21.8 0.0 0.00017 21.5 0.0 1.2 1 0 0 1 1 1 1 NACHT domain KTI12 PF08433.10 gi|385805540|ref|YP_005841938.1| - 0.00026 20.5 0.3 0.00045 19.7 0.3 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA PF00004.29 gi|385805540|ref|YP_005841938.1| - 0.00026 21.4 0.1 0.00049 20.5 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|385805540|ref|YP_005841938.1| - 0.00075 19.1 0.1 0.0013 18.4 0.1 1.6 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 gi|385805540|ref|YP_005841938.1| - 0.00076 18.8 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) SRP54 PF00448.22 gi|385805540|ref|YP_005841938.1| - 0.001 18.7 0.2 0.002 17.8 0.2 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|385805540|ref|YP_005841938.1| - 0.0012 18.8 0.1 0.0023 18.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385805540|ref|YP_005841938.1| - 0.0017 18.1 0.3 0.0055 16.5 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|385805540|ref|YP_005841938.1| - 0.0021 18.2 0.1 0.011 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|385805540|ref|YP_005841938.1| - 0.0053 16.5 0.1 0.01 15.6 0.1 1.6 1 1 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|385805540|ref|YP_005841938.1| - 0.01 15.8 2.7 0.015 15.3 0.5 2.0 2 0 0 2 2 2 0 NTPase MeaB PF03308.16 gi|385805540|ref|YP_005841938.1| - 0.013 14.5 0.1 0.027 13.5 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|385805540|ref|YP_005841938.1| - 0.013 15.2 0.5 0.03 14.0 0.4 1.8 2 1 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|385805540|ref|YP_005841938.1| - 0.014 15.3 0.2 0.019 14.9 0.2 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|385805540|ref|YP_005841938.1| - 0.016 15.3 0.8 0.15 12.2 0.1 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|385805540|ref|YP_005841938.1| - 0.029 14.3 0.1 0.079 12.9 0.1 1.7 1 0 0 1 1 1 0 RsgA GTPase DNA_pol_B_3 PF08408.10 gi|385805540|ref|YP_005841938.1| - 0.03 14.5 0.6 0.042 14.1 0.6 1.3 1 0 0 1 1 1 0 DNA polymerase family B viral insert AAA_7 PF12775.7 gi|385805540|ref|YP_005841938.1| - 0.03 13.8 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|385805540|ref|YP_005841938.1| - 0.034 14.5 0.8 0.065 13.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain 6PF2K PF01591.18 gi|385805540|ref|YP_005841938.1| - 0.043 13.1 0.4 0.095 12.0 0.1 1.6 2 0 0 2 2 2 0 6-phosphofructo-2-kinase T2SSE PF00437.20 gi|385805540|ref|YP_005841938.1| - 0.052 12.6 0.8 0.11 11.6 0.4 1.7 1 1 0 1 1 1 0 Type II/IV secretion system protein DAP3 PF10236.9 gi|385805540|ref|YP_005841938.1| - 0.06 12.5 0.2 0.09 11.9 0.2 1.3 1 1 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Zeta_toxin PF06414.12 gi|385805540|ref|YP_005841938.1| - 0.08 12.2 0.3 0.18 11.1 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin SecY PF00344.20 gi|385805541|ref|YP_005841939.1| - 1.8e-60 204.8 16.3 2.3e-60 204.4 16.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|385805541|ref|YP_005841939.1| - 1.4e-08 34.5 0.9 1.4e-08 34.5 0.9 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|385805542|ref|YP_005841940.1| - 4.7e-21 75.8 0.8 6.3e-21 75.4 0.8 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|385805543|ref|YP_005841941.1| - 0.00016 21.5 0.0 0.00037 20.3 0.0 1.7 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Lipoprotein_Ltp PF07553.11 gi|385805543|ref|YP_005841941.1| - 0.069 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein Ribosomal_S5_C PF03719.15 gi|385805544|ref|YP_005841942.1| - 1.6e-25 88.4 0.0 2.5e-25 87.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|385805544|ref|YP_005841942.1| - 6.8e-24 83.6 3.3 1.2e-22 79.7 0.6 2.6 3 0 0 3 3 3 2 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|385805545|ref|YP_005841943.1| - 6.7e-25 88.0 5.3 8.2e-17 61.7 3.1 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|385805545|ref|YP_005841943.1| - 1.1e-09 39.0 0.1 2.5e-09 37.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|385805545|ref|YP_005841943.1| - 1.1e-08 35.4 0.5 1.5e-08 35.0 0.5 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|385805546|ref|YP_005841944.1| - 4.1e-49 166.4 10.4 4.6e-49 166.2 10.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HSR PF03172.13 gi|385805546|ref|YP_005841944.1| - 0.027 14.6 0.0 0.048 13.8 0.0 1.4 1 0 0 1 1 1 0 HSR domain Ribosomal_L32e PF01655.18 gi|385805547|ref|YP_005841945.1| - 2e-29 102.1 0.1 2.5e-29 101.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 HERV-K_env_2 PF13804.6 gi|385805547|ref|YP_005841945.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Retro-transcribing viruses envelope glycoprotein Ribosomal_L6 PF00347.23 gi|385805548|ref|YP_005841946.1| - 3.6e-27 94.8 7.1 1.1e-15 58.0 2.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.19 gi|385805549|ref|YP_005841947.1| - 2e-24 85.9 0.2 2.5e-24 85.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|385805550|ref|YP_005841948.1| - 1.4e-13 50.4 4.4 1.5e-13 50.2 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Zn_Tnp_IS91 PF14319.6 gi|385805550|ref|YP_005841948.1| - 0.0027 17.7 0.8 0.0028 17.7 0.8 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-P11 PF03854.14 gi|385805550|ref|YP_005841948.1| - 0.036 13.7 0.6 0.048 13.3 0.6 1.3 1 0 0 1 1 1 0 P-11 zinc finger zf-HYPF PF07503.12 gi|385805550|ref|YP_005841948.1| - 0.094 12.5 5.7 0.11 12.3 0.1 2.4 2 1 0 2 2 2 0 HypF finger Ribosomal_L5_C PF00673.21 gi|385805551|ref|YP_005841949.1| - 1.8e-25 89.0 0.0 3.4e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|385805551|ref|YP_005841949.1| - 3.8e-17 62.4 0.3 8.9e-17 61.2 0.3 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 Casc1_N PF15927.5 gi|385805551|ref|YP_005841949.1| - 0.12 12.1 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Cancer susceptibility candidate 1 N-terminus DUF4962 PF16332.5 gi|385805551|ref|YP_005841949.1| - 0.21 10.0 0.0 0.26 9.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4962) RS4NT PF08071.12 gi|385805552|ref|YP_005841950.1| - 6.9e-17 61.3 1.4 1.3e-16 60.4 1.4 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain Ribosomal_S4e PF00900.20 gi|385805552|ref|YP_005841950.1| - 7.4e-17 61.0 0.0 1.4e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|385805552|ref|YP_005841950.1| - 1.9e-10 40.3 1.1 1e-09 38.0 0.2 2.3 2 0 0 2 2 2 1 S4 domain Ribosomal_L26 PF16906.5 gi|385805553|ref|YP_005841951.1| - 2.7e-35 120.7 2.0 4.4e-35 120.0 2.0 1.3 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|385805553|ref|YP_005841951.1| - 6.3e-10 38.7 2.0 1.6e-09 37.4 2.0 1.8 1 0 0 1 1 1 1 KOW motif Drf_GBD PF06371.13 gi|385805553|ref|YP_005841951.1| - 6.7 6.2 9.5 28 4.2 0.0 2.1 2 0 0 2 2 2 0 Diaphanous GTPase-binding Domain Ribosomal_L14 PF00238.19 gi|385805554|ref|YP_005841952.1| - 6.6e-34 116.6 0.2 7.5e-34 116.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|385805555|ref|YP_005841953.1| - 1.6e-27 95.4 3.5 2.2e-27 94.9 3.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.9 gi|385805555|ref|YP_005841953.1| - 0.36 10.6 2.7 0.64 9.8 2.7 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain UPF0086 PF01868.16 gi|385805556|ref|YP_005841954.1| - 2.3e-14 53.0 0.1 2.7e-14 52.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|385805557|ref|YP_005841955.1| - 2.5e-19 69.0 3.0 3.2e-19 68.6 3.0 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|385805558|ref|YP_005841956.1| - 2.2e-23 82.6 2.5 8.6e-23 80.7 1.2 2.1 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|385805558|ref|YP_005841956.1| - 2.6e-13 49.6 0.0 9.6e-13 47.8 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|385805558|ref|YP_005841956.1| - 0.03 14.2 0.1 0.14 12.0 0.0 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|385805559|ref|YP_005841957.1| - 4.6e-30 103.9 0.5 5.5e-30 103.6 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|385805560|ref|YP_005841958.1| - 1.7e-31 108.0 0.5 2.1e-31 107.6 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|385805560|ref|YP_005841958.1| - 0.17 12.4 0.1 0.26 11.8 0.1 1.3 1 0 0 1 1 1 0 bZIP Maf transcription factor VWA_CoxE PF05762.14 gi|385805561|ref|YP_005841959.1| - 3.8e-10 39.5 0.0 6.2e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|385805561|ref|YP_005841959.1| - 0.0049 17.5 0.5 0.054 14.2 0.5 2.5 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF5344 PF17279.2 gi|385805561|ref|YP_005841959.1| - 0.041 14.5 0.4 0.13 12.9 0.4 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5344) Phage_XkdX PF09693.10 gi|385805561|ref|YP_005841959.1| - 0.067 13.2 1.8 26 4.9 0.1 3.6 3 0 0 3 3 3 0 Phage uncharacterised protein (Phage_XkdX) TPR_11 PF13414.6 gi|385805561|ref|YP_005841959.1| - 0.07 12.8 0.0 1.6 8.5 0.0 2.6 2 0 0 2 2 2 0 TPR repeat AAA_5 PF07728.14 gi|385805562|ref|YP_005841960.1| - 4.3e-18 65.6 0.0 9.8e-18 64.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|385805562|ref|YP_005841960.1| - 0.00048 20.6 0.1 0.0021 18.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|385805562|ref|YP_005841960.1| - 0.00083 19.2 0.0 0.0049 16.7 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|385805562|ref|YP_005841960.1| - 0.002 17.9 0.0 0.87 9.3 0.1 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.6 gi|385805562|ref|YP_005841960.1| - 0.0024 18.4 0.1 0.013 16.1 0.0 2.2 3 1 0 3 3 3 1 AAA domain Mg_chelatase PF01078.21 gi|385805562|ref|YP_005841960.1| - 0.042 13.2 0.1 0.68 9.3 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|385805562|ref|YP_005841960.1| - 0.045 14.1 0.0 0.077 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|385805562|ref|YP_005841960.1| - 0.065 12.9 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|385805562|ref|YP_005841960.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_7 PF12775.7 gi|385805562|ref|YP_005841960.1| - 0.15 11.5 0.0 0.64 9.5 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region Ribosomal_L2_C PF03947.18 gi|385805564|ref|YP_005841962.1| - 9.2e-43 145.4 1.4 1.4e-42 144.9 1.4 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|385805564|ref|YP_005841962.1| - 4.9e-14 52.1 0.1 1.6e-13 50.4 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|385805565|ref|YP_005841963.1| - 3.1e-15 56.3 3.2 4.6e-15 55.7 3.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L23 ResIII PF04851.15 gi|385805565|ref|YP_005841963.1| - 0.018 15.0 0.1 0.021 14.8 0.1 1.1 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit ALG11_N PF15924.5 gi|385805565|ref|YP_005841963.1| - 0.053 13.6 0.1 0.053 13.6 0.1 1.1 1 0 0 1 1 1 0 ALG11 mannosyltransferase N-terminus ubiquitin PF00240.23 gi|385805565|ref|YP_005841963.1| - 0.062 13.1 0.2 0.087 12.6 0.2 1.2 1 0 0 1 1 1 0 Ubiquitin family Ribosomal_L4 PF00573.22 gi|385805566|ref|YP_005841964.1| - 1.1e-38 132.9 0.0 1.2e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Kinesin_assoc PF16183.5 gi|385805566|ref|YP_005841964.1| - 0.075 13.2 0.3 0.13 12.4 0.3 1.3 1 0 0 1 1 1 0 Kinesin-associated Ribosomal_L3 PF00297.22 gi|385805567|ref|YP_005841965.1| - 1.5e-69 234.8 0.0 1.8e-69 234.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|385805568|ref|YP_005841966.1| - 4.4e-59 200.3 0.0 4.9e-59 200.2 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase TrkA_C PF02080.21 gi|385805568|ref|YP_005841966.1| - 0.045 13.6 0.0 0.24 11.3 0.0 2.2 1 1 1 2 2 2 0 TrkA-C domain SPOUT_MTase_2 PF14419.6 gi|385805568|ref|YP_005841966.1| - 0.049 13.0 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Hexapep PF00132.24 gi|385805570|ref|YP_005841968.1| - 3.5e-26 89.9 32.8 2e-07 30.5 6.3 5.5 5 1 0 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|385805570|ref|YP_005841968.1| - 1.7e-22 78.9 23.3 2e-08 33.8 6.1 6.2 6 0 0 6 6 6 4 Hexapeptide repeat of succinyl-transferase DUF2613 PF11021.8 gi|385805570|ref|YP_005841968.1| - 0.024 14.8 2.2 0.064 13.4 2.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) SH3_12 PF18129.1 gi|385805570|ref|YP_005841968.1| - 0.089 12.9 1.6 0.76 9.9 0.5 2.7 2 1 0 2 2 2 0 Xrn1 SH3-like domain DEAD PF00270.29 gi|385805571|ref|YP_005841969.1| - 6.7e-35 120.4 0.0 2.8e-34 118.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|385805571|ref|YP_005841969.1| - 5.3e-20 72.0 0.0 6.4e-19 68.5 0.0 2.6 2 1 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.31 gi|385805571|ref|YP_005841969.1| - 2.1e-18 66.7 0.5 3.5e-17 62.7 0.1 3.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385805571|ref|YP_005841969.1| - 9e-09 35.6 0.1 2.8e-07 30.7 0.0 3.1 4 0 0 4 4 4 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|385805571|ref|YP_005841969.1| - 0.0097 16.2 1.7 0.35 11.1 1.7 2.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|385805571|ref|YP_005841969.1| - 0.037 14.4 0.0 0.16 12.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|385805571|ref|YP_005841969.1| - 0.065 13.4 0.3 0.065 13.4 0.3 1.9 2 0 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|385805571|ref|YP_005841969.1| - 0.077 12.7 0.9 0.19 11.4 0.9 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|385805571|ref|YP_005841969.1| - 0.085 12.9 0.1 0.38 10.8 0.0 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|385805571|ref|YP_005841969.1| - 0.11 12.5 0.9 1.7 8.7 0.2 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|385805571|ref|YP_005841969.1| - 0.15 12.4 3.1 1.1 9.7 0.2 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF4923 PF16270.5 gi|385805571|ref|YP_005841969.1| - 0.17 11.7 1.8 0.18 11.6 0.4 1.8 2 0 0 2 2 2 0 Lipocalin-like domain (DUF4923) MFS_1 PF07690.16 gi|385805572|ref|YP_005841970.1| - 4.7e-10 38.9 54.4 7.1e-05 21.9 10.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Aldo_ket_red PF00248.21 gi|385805573|ref|YP_005841971.1| - 4.5e-62 209.9 0.5 5.8e-60 203.0 0.5 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Glycos_transf_2 PF00535.26 gi|385805574|ref|YP_005841972.1| - 1.4e-24 86.8 0.1 1.9e-24 86.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385805574|ref|YP_005841972.1| - 3.5e-09 36.9 0.1 5.2e-09 36.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385805574|ref|YP_005841972.1| - 0.0041 16.6 0.1 0.0063 16.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 ResB PF05140.14 gi|385805574|ref|YP_005841972.1| - 0.041 12.6 0.0 0.041 12.6 0.0 1.1 1 0 0 1 1 1 0 ResB-like family Glyco_tranf_2_4 PF13704.6 gi|385805574|ref|YP_005841972.1| - 0.054 14.0 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF1616 PF07760.11 gi|385805575|ref|YP_005841973.1| - 9.2e-32 110.6 14.0 1.3e-31 110.1 14.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1616 PF07760.11 gi|385805576|ref|YP_005841974.1| - 1.3e-09 37.9 0.1 1.5e-09 37.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Insulin_TMD PF17870.1 gi|385805577|ref|YP_005841975.1| - 0.023 14.8 7.1 0.041 14.0 0.4 2.4 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment DUF3836 PF12930.7 gi|385805577|ref|YP_005841975.1| - 0.088 12.6 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF3836) DUF58 PF01882.18 gi|385805578|ref|YP_005841976.1| - 1.6e-07 31.5 0.0 2.8e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF999 PF06198.11 gi|385805578|ref|YP_005841976.1| - 0.043 13.8 0.5 0.09 12.8 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF999) DUF2045 PF09741.9 gi|385805578|ref|YP_005841976.1| - 0.064 12.6 0.1 0.16 11.4 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2045) AAA_3 PF07726.11 gi|385805579|ref|YP_005841977.1| - 3.2e-43 146.7 0.0 4.6e-43 146.2 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|385805579|ref|YP_005841977.1| - 3.3e-16 58.9 0.0 5.8e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|385805579|ref|YP_005841977.1| - 5.7e-15 55.5 0.0 9.2e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|385805579|ref|YP_005841977.1| - 8.4e-08 32.7 0.0 2.8e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|385805579|ref|YP_005841977.1| - 5.6e-06 26.2 0.0 0.035 13.8 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|385805579|ref|YP_005841977.1| - 6.2e-06 26.1 0.6 7.5e-05 22.5 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|385805579|ref|YP_005841977.1| - 3.6e-05 23.3 0.0 0.0025 17.2 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|385805579|ref|YP_005841977.1| - 4.4e-05 23.9 0.0 0.02 15.3 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|385805579|ref|YP_005841977.1| - 0.0016 18.7 0.0 0.0041 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain MCM PF00493.23 gi|385805579|ref|YP_005841977.1| - 0.0087 15.2 0.0 0.029 13.5 0.0 2.1 1 1 0 1 1 1 1 MCM P-loop domain AAA_19 PF13245.6 gi|385805579|ref|YP_005841977.1| - 0.016 15.5 0.1 1.6 9.0 0.1 2.6 3 0 0 3 3 2 0 AAA domain DEAD PF00270.29 gi|385805579|ref|YP_005841977.1| - 0.017 14.9 0.0 0.02 14.7 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF771 PF05595.11 gi|385805579|ref|YP_005841977.1| - 0.022 14.7 0.0 0.054 13.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF771) AAA_2 PF07724.14 gi|385805579|ref|YP_005841977.1| - 0.037 14.2 0.0 0.13 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.6 gi|385805579|ref|YP_005841977.1| - 0.047 13.8 0.0 0.19 11.9 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|385805579|ref|YP_005841977.1| - 0.05 13.3 0.1 0.84 9.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|385805579|ref|YP_005841977.1| - 0.055 14.0 0.0 0.12 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|385805579|ref|YP_005841977.1| - 0.08 12.7 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|385805579|ref|YP_005841977.1| - 0.082 13.4 0.9 0.28 11.6 0.9 1.8 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|385805579|ref|YP_005841977.1| - 0.15 11.4 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_transp_aux PF09822.9 gi|385805580|ref|YP_005841978.1| - 8.8e-05 22.1 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|385805580|ref|YP_005841978.1| - 0.042 14.3 0.0 0.071 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) CarboxypepD_reg PF13620.6 gi|385805581|ref|YP_005841979.1| - 0.0032 17.7 0.0 0.014 15.7 0.0 2.1 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain SNARE PF05739.19 gi|385805582|ref|YP_005841980.1| - 0.04 13.9 0.6 0.048 13.7 0.6 1.2 1 0 0 1 1 1 0 SNARE domain LRR19-TM PF15176.6 gi|385805582|ref|YP_005841980.1| - 0.093 12.7 0.3 0.093 12.7 0.3 1.1 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain LMBR1 PF04791.16 gi|385805584|ref|YP_005841982.1| - 0.00043 19.3 0.0 0.00049 19.1 0.0 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein Phage_holin_3_6 PF07332.11 gi|385805584|ref|YP_005841982.1| - 0.006 16.6 0.0 0.0078 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF2254 PF10011.9 gi|385805584|ref|YP_005841982.1| - 0.059 12.2 0.0 0.066 12.0 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Na_sulph_symp PF00939.19 gi|385805585|ref|YP_005841983.1| - 1.5e-148 495.8 39.5 1.8e-148 495.5 39.5 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|385805585|ref|YP_005841983.1| - 1.5e-17 63.8 64.3 1.4e-13 50.7 32.8 2.5 1 1 1 2 2 2 2 Citrate transporter Fumerase_C PF05683.12 gi|385805586|ref|YP_005841984.1| - 4.7e-44 150.2 0.0 5.7e-44 149.9 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|385805587|ref|YP_005841985.1| - 3.8e-77 259.3 0.0 4.3e-77 259.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) RHH_1 PF01402.21 gi|385805587|ref|YP_005841985.1| - 0.073 13.0 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family malic PF00390.19 gi|385805588|ref|YP_005841986.1| - 2.5e-28 99.1 0.1 2.3e-25 89.5 0.1 2.8 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|385805588|ref|YP_005841986.1| - 5.1e-20 71.8 0.2 1.1e-18 67.5 0.2 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF134 PF02001.16 gi|385805590|ref|YP_005841988.1| - 3.3e-15 56.4 0.1 3.5e-15 56.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 DUF1492 PF07374.11 gi|385805590|ref|YP_005841988.1| - 0.0053 16.9 0.0 0.0072 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1492) Sigma70_r4_2 PF08281.12 gi|385805590|ref|YP_005841988.1| - 0.033 13.9 0.0 0.086 12.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|385805590|ref|YP_005841988.1| - 0.044 13.6 0.0 0.19 11.6 0.0 1.8 1 1 1 2 2 2 0 Homeodomain-like domain DUF5320 PF17253.2 gi|385805591|ref|YP_005841989.1| - 3.8e-09 37.5 0.0 4.5e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5320) Aldolase_II PF00596.21 gi|385805592|ref|YP_005841990.1| - 2.3e-48 164.6 0.2 2.6e-48 164.4 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Silic_transp PF03842.13 gi|385805592|ref|YP_005841990.1| - 0.11 10.8 0.0 0.35 9.1 0.0 1.7 2 0 0 2 2 2 0 Silicon transporter Rhomboid PF01694.22 gi|385805593|ref|YP_005841991.1| - 1.7e-38 132.0 18.4 1.7e-38 132.0 18.4 2.0 3 0 0 3 3 3 1 Rhomboid family DUF1751 PF08551.10 gi|385805593|ref|YP_005841991.1| - 0.00066 20.2 0.3 0.00066 20.2 0.3 3.4 4 1 0 4 4 4 1 Eukaryotic integral membrane protein (DUF1751) tRNA_SAD PF07973.14 gi|385805594|ref|YP_005841992.1| - 3.7e-12 46.1 0.2 6.2e-12 45.4 0.2 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|385805594|ref|YP_005841992.1| - 3.5e-10 39.0 0.0 5.2e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) TPP_enzyme_C PF02775.21 gi|385805595|ref|YP_005841993.1| - 1.6e-29 102.7 0.1 2.4e-29 102.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|385805595|ref|YP_005841993.1| - 3.9e-21 74.9 0.2 7.8e-21 74.0 0.2 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|385805596|ref|YP_005841994.1| - 2.3e-56 191.2 0.0 3.1e-56 190.7 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|385805596|ref|YP_005841994.1| - 3.8e-27 95.5 0.0 9e-27 94.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|385805596|ref|YP_005841994.1| - 1.1e-09 38.5 0.0 2.8e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|385805596|ref|YP_005841994.1| - 0.0041 17.0 0.0 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain Lac_bphage_repr PF06543.12 gi|385805596|ref|YP_005841994.1| - 0.024 14.6 0.1 0.11 12.5 0.0 2.2 3 0 0 3 3 3 0 Lactococcus bacteriophage repressor TPP_enzyme_N PF02776.18 gi|385805596|ref|YP_005841994.1| - 0.032 13.9 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GMP_synt_C PF00958.22 gi|385805597|ref|YP_005841995.1| - 1.1e-31 108.8 0.1 2.1e-31 107.8 0.1 1.5 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.28 gi|385805597|ref|YP_005841995.1| - 1.3e-28 100.0 0.0 2.1e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|385805597|ref|YP_005841995.1| - 3e-11 43.5 0.0 1.6e-10 41.1 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.17 gi|385805597|ref|YP_005841995.1| - 1e-09 37.9 0.5 0.00017 20.8 0.0 2.8 3 0 0 3 3 3 2 NAD synthase QueC PF06508.13 gi|385805597|ref|YP_005841995.1| - 0.00015 21.3 0.0 0.013 15.0 0.0 2.3 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|385805597|ref|YP_005841995.1| - 0.00022 21.0 0.0 0.00042 20.1 0.0 1.5 1 1 0 1 1 1 1 PP-loop family GATase_3 PF07685.14 gi|385805597|ref|YP_005841995.1| - 0.00063 19.4 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain ThiI PF02568.14 gi|385805597|ref|YP_005841995.1| - 0.095 12.3 0.2 0.25 10.9 0.2 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|385805597|ref|YP_005841995.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Adenylsucc_synt PF00709.21 gi|385805598|ref|YP_005841996.1| - 2e-74 251.0 1.3 9.7e-38 130.2 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pyr_redox_2 PF07992.14 gi|385805599|ref|YP_005841997.1| - 2.3e-11 43.5 1.1 0.0006 19.1 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385805599|ref|YP_005841997.1| - 1.8e-10 40.1 0.3 3.6e-05 22.6 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|385805599|ref|YP_005841997.1| - 3.4e-09 36.4 0.8 0.0012 18.2 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385805599|ref|YP_005841997.1| - 2.1e-08 34.2 0.3 0.00056 19.6 0.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|385805599|ref|YP_005841997.1| - 4.5e-07 29.3 2.4 0.003 16.7 0.0 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|385805599|ref|YP_005841997.1| - 7e-05 22.9 0.0 0.0051 16.8 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|385805599|ref|YP_005841997.1| - 7.4e-05 22.0 0.8 0.00056 19.1 0.4 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|385805599|ref|YP_005841997.1| - 0.00038 19.8 0.1 0.0006 19.2 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|385805599|ref|YP_005841997.1| - 0.0014 17.9 0.7 0.0069 15.7 0.1 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|385805599|ref|YP_005841997.1| - 0.0024 18.1 0.6 0.0065 16.7 0.2 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|385805599|ref|YP_005841997.1| - 0.0099 15.0 0.1 0.015 14.4 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|385805599|ref|YP_005841997.1| - 0.014 14.3 0.2 0.02 13.7 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_oxidored PF12831.7 gi|385805599|ref|YP_005841997.1| - 0.061 12.7 0.9 0.38 10.0 0.5 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.21 gi|385805599|ref|YP_005841997.1| - 0.18 11.1 0.1 0.6 9.4 0.1 1.7 2 0 0 2 2 2 0 ThiF family Pyr_redox PF00070.27 gi|385805599|ref|YP_005841997.1| - 0.42 11.2 3.2 26 5.4 0.1 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SAICAR_synt PF01259.18 gi|385805600|ref|YP_005841998.1| - 3.7e-50 170.9 0.0 4.5e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase Pribosyltran PF00156.27 gi|385805601|ref|YP_005841999.1| - 0.00029 20.4 0.1 0.00082 18.9 0.1 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|385805601|ref|YP_005841999.1| - 0.1 12.1 0.0 0.25 10.8 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase GARS_A PF01071.19 gi|385805602|ref|YP_005842000.1| - 1.4e-40 139.2 0.0 2.1e-40 138.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|385805602|ref|YP_005842000.1| - 2.7e-21 76.1 0.0 4.8e-21 75.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|385805602|ref|YP_005842000.1| - 8.1e-07 29.2 0.0 1.9e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|385805602|ref|YP_005842000.1| - 4.8e-05 22.8 0.0 8.9e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|385805602|ref|YP_005842000.1| - 0.0004 20.5 0.0 0.0017 18.4 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_TupA PF14305.6 gi|385805602|ref|YP_005842000.1| - 0.0073 16.1 0.1 0.021 14.6 0.0 1.7 2 0 0 2 2 2 1 TupA-like ATPgrasp ATP-grasp_4 PF13535.6 gi|385805602|ref|YP_005842000.1| - 0.018 14.7 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain GSH-S_ATP PF02955.16 gi|385805602|ref|YP_005842000.1| - 0.025 14.0 0.0 0.054 12.9 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|385805602|ref|YP_005842000.1| - 0.033 13.4 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 YheC/D like ATP-grasp CPSase_L_D2 PF02786.17 gi|385805602|ref|YP_005842000.1| - 0.034 13.6 0.0 0.072 12.6 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Oxidored_nitro PF00148.19 gi|385805602|ref|YP_005842000.1| - 0.053 12.3 0.0 0.09 11.5 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ATP-grasp PF02222.22 gi|385805603|ref|YP_005842001.1| - 2.4e-43 147.7 0.1 3.7e-43 147.0 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|385805603|ref|YP_005842001.1| - 7.1e-13 48.6 0.0 1.2e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|385805603|ref|YP_005842001.1| - 2.7e-08 33.6 0.1 5.8e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|385805603|ref|YP_005842001.1| - 9.3e-05 22.5 0.0 0.00023 21.3 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|385805603|ref|YP_005842001.1| - 0.0035 16.6 0.0 1.8 7.7 0.0 2.2 2 0 0 2 2 2 2 YheC/D like ATP-grasp ATP-grasp_5 PF13549.6 gi|385805603|ref|YP_005842001.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain RmlD_sub_bind PF04321.17 gi|385805603|ref|YP_005842001.1| - 0.16 11.0 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain AIRC PF00731.20 gi|385805604|ref|YP_005842002.1| - 6e-49 165.4 0.1 7.4e-49 165.1 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase Fe-ADH_2 PF13685.6 gi|385805604|ref|YP_005842002.1| - 0.0095 15.7 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase PurS PF02700.14 gi|385805605|ref|YP_005842003.1| - 1.7e-18 66.5 0.3 1.9e-18 66.4 0.3 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1878 PF08963.10 gi|385805605|ref|YP_005842003.1| - 0.035 14.6 0.1 0.04 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1878) Terminase_6C PF17289.2 gi|385805605|ref|YP_005842003.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Terminase RNaseH-like domain GATase_5 PF13507.6 gi|385805606|ref|YP_005842004.1| - 8.4e-41 139.8 0.0 1.5e-40 138.9 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|385805606|ref|YP_005842004.1| - 4.3e-10 39.7 0.0 5.5e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|385805606|ref|YP_005842004.1| - 1.9e-08 34.1 0.0 3.2e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|385805606|ref|YP_005842004.1| - 5.1e-07 29.6 0.0 7.1e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family SNO PF01174.19 gi|385805606|ref|YP_005842004.1| - 0.00096 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|385805606|ref|YP_005842004.1| - 0.02 14.7 0.0 0.029 14.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 AIRS PF00586.24 gi|385805607|ref|YP_005842005.1| - 8.7e-45 151.3 0.0 4.2e-23 81.8 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|385805607|ref|YP_005842005.1| - 1.1e-41 142.6 0.2 2.1e-24 86.4 0.1 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|385805607|ref|YP_005842005.1| - 5.6e-11 42.8 0.2 1.3e-10 41.7 0.2 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain DUF3801 PF12687.7 gi|385805607|ref|YP_005842005.1| - 0.19 11.8 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) GATase_7 PF13537.6 gi|385805608|ref|YP_005842006.1| - 1.5e-12 47.5 0.0 8e-12 45.2 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|385805608|ref|YP_005842006.1| - 4.7e-11 43.0 0.0 8.1e-11 42.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|385805608|ref|YP_005842006.1| - 2.6e-06 27.1 0.2 4.8e-06 26.2 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain AIRS_C PF02769.22 gi|385805609|ref|YP_005842007.1| - 1.8e-18 67.1 0.0 3.2e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|385805609|ref|YP_005842007.1| - 6.7e-11 42.7 0.1 1.5e-10 41.6 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1297 PF06973.12 gi|385805610|ref|YP_005842008.1| - 9.8e-77 256.7 0.1 1.4e-76 256.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|385805610|ref|YP_005842008.1| - 2.9e-51 172.6 0.6 1.8e-50 170.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) Lyase_1 PF00206.20 gi|385805611|ref|YP_005842009.1| - 1.9e-46 158.9 0.0 3.6e-46 158.0 0.0 1.4 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|385805611|ref|YP_005842009.1| - 5.8e-13 49.2 0.8 1.9e-12 47.5 0.3 2.2 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|385805611|ref|YP_005842009.1| - 5.2e-05 23.3 1.3 0.00015 21.8 1.3 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal RecG_N PF17190.4 gi|385805611|ref|YP_005842009.1| - 0.029 15.1 1.1 0.15 12.8 0.0 2.8 3 0 0 3 3 3 0 RecG N-terminal helical domain FumaraseC_C PF10415.9 gi|385805611|ref|YP_005842009.1| - 0.029 14.8 0.1 0.094 13.2 0.1 2.0 1 0 0 1 1 1 0 Fumarase C C-terminus DUF1297 PF06973.12 gi|385805612|ref|YP_005842010.1| - 6.7e-77 257.3 0.0 9e-77 256.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|385805612|ref|YP_005842010.1| - 1.2e-46 157.6 0.1 1.8e-46 157.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|385805612|ref|YP_005842010.1| - 0.0099 15.9 0.1 0.02 15.0 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|385805612|ref|YP_005842010.1| - 0.039 13.4 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|385805612|ref|YP_005842010.1| - 0.071 12.9 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|385805612|ref|YP_005842010.1| - 0.13 11.8 0.1 0.36 10.4 0.1 1.7 1 1 0 1 1 1 0 RimK-like ATP-grasp domain ATP-grasp PF02222.22 gi|385805612|ref|YP_005842010.1| - 0.17 11.5 0.4 0.94 9.0 0.1 2.2 3 0 0 3 3 3 0 ATP-grasp domain DUF1947 PF09183.10 gi|385805612|ref|YP_005842010.1| - 2.6 8.4 5.2 6.5 7.1 0.3 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF1947) Nitroreductase PF00881.24 gi|385805614|ref|YP_005842012.1| - 1.2e-08 35.2 0.1 1.3e-08 35.0 0.1 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|385805614|ref|YP_005842012.1| - 0.00039 20.1 0.3 0.00075 19.1 0.3 1.5 1 1 0 1 1 1 1 Putative TM nitroreductase MFS_1 PF07690.16 gi|385805615|ref|YP_005842013.1| - 6.2e-37 127.3 57.6 4.9e-29 101.4 31.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF962 PF06127.11 gi|385805615|ref|YP_005842013.1| - 0.0011 18.9 0.0 0.0044 17.1 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF962) Sugar_tr PF00083.24 gi|385805617|ref|YP_005842015.1| - 5.1e-54 183.8 22.8 6.7e-54 183.4 22.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|385805617|ref|YP_005842015.1| - 2.2e-37 128.8 34.4 2.9e-35 121.8 29.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily NPM1-C PF16276.5 gi|385805618|ref|YP_005842016.1| - 0.021 14.8 0.1 0.046 13.7 0.1 1.5 1 0 0 1 1 1 0 Nucleophosmin C-terminal domain DUF4194 PF13835.6 gi|385805618|ref|YP_005842016.1| - 0.12 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) Y_Y_Y PF07495.13 gi|385805619|ref|YP_005842017.1| - 0.054 13.5 0.2 0.098 12.6 0.2 1.5 1 0 0 1 1 1 0 Y_Y_Y domain Na_H_Exchanger PF00999.21 gi|385805620|ref|YP_005842018.1| - 1.8e-24 86.3 54.0 1.8e-24 86.3 54.0 2.6 2 1 0 2 2 2 1 Sodium/hydrogen exchanger family Asp-Al_Ex PF06826.12 gi|385805620|ref|YP_005842018.1| - 0.006 16.4 8.2 0.006 16.4 8.2 5.0 3 1 2 5 5 5 1 Predicted Permease Membrane Region ATP-cone PF03477.16 gi|385805621|ref|YP_005842019.1| - 4.6e-09 36.7 0.1 5.9e-09 36.4 0.1 1.1 1 0 0 1 1 1 1 ATP cone domain ThiP_synth PF10120.9 gi|385805622|ref|YP_005842020.1| - 8.4e-44 149.1 0.0 1.1e-43 148.7 0.0 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase Cro PF09048.10 gi|385805622|ref|YP_005842020.1| - 0.0018 18.3 0.0 0.0046 17.0 0.0 1.6 1 0 0 1 1 1 1 Cro ABC_cobalt PF09819.9 gi|385805623|ref|YP_005842021.1| - 1.2e-33 115.8 12.7 1.2e-33 115.8 12.7 2.0 1 1 1 2 2 2 1 ABC-type cobalt transport system, permease component LapA_dom PF06305.11 gi|385805623|ref|YP_005842021.1| - 0.022 14.6 6.9 0.037 13.8 0.7 2.7 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain MtrB PF05440.12 gi|385805623|ref|YP_005842021.1| - 0.9 10.0 6.1 7.5 7.0 0.3 3.1 3 1 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B FA_desaturase PF00487.24 gi|385805623|ref|YP_005842021.1| - 0.9 9.3 9.0 5.9 6.7 3.8 2.1 1 1 0 2 2 2 0 Fatty acid desaturase CbiQ PF02361.16 gi|385805624|ref|YP_005842022.1| - 1.5e-12 47.6 7.1 1.5e-12 47.6 7.1 1.3 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|385805625|ref|YP_005842023.1| - 1.7e-46 158.1 0.0 3.1e-23 82.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|385805625|ref|YP_005842023.1| - 3.3e-23 83.0 10.7 2.6e-10 40.6 0.0 4.3 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385805625|ref|YP_005842023.1| - 2.4e-13 50.0 0.7 2.3e-05 23.9 0.2 4.0 2 2 1 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385805625|ref|YP_005842023.1| - 2.4e-11 44.5 8.0 4e-05 24.2 4.0 3.3 1 1 2 3 3 2 2 AAA domain AAA_29 PF13555.6 gi|385805625|ref|YP_005842023.1| - 5e-10 39.0 1.5 0.00037 20.2 0.5 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385805625|ref|YP_005842023.1| - 2.7e-08 34.4 0.0 0.0091 16.4 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.6 gi|385805625|ref|YP_005842023.1| - 9.9e-08 32.1 3.9 4.5e-05 23.3 0.0 3.9 2 2 1 3 3 3 1 AAA ATPase domain AAA_30 PF13604.6 gi|385805625|ref|YP_005842023.1| - 3.7e-07 30.1 0.5 0.0012 18.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_13 PF13166.6 gi|385805625|ref|YP_005842023.1| - 7.6e-07 28.2 4.9 0.076 11.6 0.1 3.9 4 0 0 4 4 4 3 AAA domain AAA_22 PF13401.6 gi|385805625|ref|YP_005842023.1| - 9.2e-07 29.2 0.1 0.0054 17.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|385805625|ref|YP_005842023.1| - 1.3e-06 28.4 0.3 0.0091 15.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase T2SSE PF00437.20 gi|385805625|ref|YP_005842023.1| - 2.1e-06 27.0 0.2 0.028 13.5 0.3 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_25 PF13481.6 gi|385805625|ref|YP_005842023.1| - 3.1e-06 26.9 0.3 0.035 13.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|385805625|ref|YP_005842023.1| - 4.7e-06 26.8 0.4 0.019 15.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|385805625|ref|YP_005842023.1| - 8.7e-06 25.1 0.1 0.039 13.2 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin NACHT PF05729.12 gi|385805625|ref|YP_005842023.1| - 1.5e-05 25.0 3.7 0.012 15.6 0.1 2.5 2 0 0 2 2 2 2 NACHT domain NB-ARC PF00931.22 gi|385805625|ref|YP_005842023.1| - 3.2e-05 23.2 0.1 0.034 13.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain ATPase_2 PF01637.18 gi|385805625|ref|YP_005842023.1| - 6.6e-05 22.9 1.1 0.048 13.6 0.1 3.0 3 0 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|385805625|ref|YP_005842023.1| - 9.6e-05 22.4 0.6 0.1 12.6 0.0 3.2 2 1 0 3 3 3 1 AAA domain Rad17 PF03215.15 gi|385805625|ref|YP_005842023.1| - 0.00011 22.1 0.0 0.17 11.8 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|385805625|ref|YP_005842023.1| - 0.00017 22.2 0.0 0.98 10.0 0.0 3.0 2 0 0 2 2 2 2 AAA domain PIF1 PF05970.14 gi|385805625|ref|YP_005842023.1| - 0.00022 20.5 0.2 0.042 13.0 0.1 2.4 2 0 0 2 2 2 1 PIF1-like helicase AAA_24 PF13479.6 gi|385805625|ref|YP_005842023.1| - 0.00024 20.9 4.8 0.19 11.4 0.1 3.7 3 1 0 3 3 3 1 AAA domain PduV-EutP PF10662.9 gi|385805625|ref|YP_005842023.1| - 0.00029 20.6 0.3 0.56 9.9 0.0 2.7 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|385805625|ref|YP_005842023.1| - 0.00029 20.8 0.2 0.16 12.0 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|385805625|ref|YP_005842023.1| - 0.00029 21.2 0.5 0.62 10.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|385805625|ref|YP_005842023.1| - 0.00045 20.6 0.2 0.092 13.2 0.0 3.3 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|385805625|ref|YP_005842023.1| - 0.0005 19.3 0.3 0.061 12.5 0.0 2.3 2 0 0 2 2 2 1 G-protein alpha subunit cobW PF02492.19 gi|385805625|ref|YP_005842023.1| - 0.00057 19.5 6.3 0.036 13.7 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|385805625|ref|YP_005842023.1| - 0.0011 16.7 0.7 0.0024 15.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3584) MobB PF03205.14 gi|385805625|ref|YP_005842023.1| - 0.0017 18.2 2.5 1.2 9.0 0.3 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|385805625|ref|YP_005842023.1| - 0.0024 16.9 0.0 1.5 7.7 0.0 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB DLIC PF05783.11 gi|385805625|ref|YP_005842023.1| - 0.0025 16.7 0.6 1.3 7.7 0.1 2.1 2 0 0 2 2 2 2 Dynein light intermediate chain (DLIC) MMR_HSR1 PF01926.23 gi|385805625|ref|YP_005842023.1| - 0.0028 17.7 0.6 1.3 9.2 0.0 2.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|385805625|ref|YP_005842023.1| - 0.0028 18.0 0.1 1.2 9.6 0.0 2.7 2 0 0 2 2 2 1 RNA helicase Pox_A32 PF04665.12 gi|385805625|ref|YP_005842023.1| - 0.0033 16.9 0.4 1.9 7.9 0.0 2.4 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_27 PF13514.6 gi|385805625|ref|YP_005842023.1| - 0.0046 16.6 0.2 3.3 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|385805625|ref|YP_005842023.1| - 0.0065 15.7 0.0 0.23 10.6 0.1 2.2 2 0 0 2 2 2 1 TIP49 P-loop domain SRP54 PF00448.22 gi|385805625|ref|YP_005842023.1| - 0.0079 15.8 3.9 0.036 13.7 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|385805625|ref|YP_005842023.1| - 0.0081 16.1 3.4 1.9 8.3 0.2 2.6 2 0 0 2 2 2 1 NTPase PhoH PF02562.16 gi|385805625|ref|YP_005842023.1| - 0.01 15.3 0.1 4 6.8 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|385805625|ref|YP_005842023.1| - 0.011 15.3 0.1 0.94 9.0 0.0 2.5 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|385805625|ref|YP_005842023.1| - 0.013 15.2 0.1 4 7.1 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Roc PF08477.13 gi|385805625|ref|YP_005842023.1| - 0.013 15.7 1.3 0.79 10.0 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Mg_chelatase PF01078.21 gi|385805625|ref|YP_005842023.1| - 0.014 14.8 0.1 5.7 6.3 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|385805625|ref|YP_005842023.1| - 0.016 14.6 1.1 3.3 7.0 0.3 2.4 2 0 0 2 2 2 0 KaiC PRK PF00485.18 gi|385805625|ref|YP_005842023.1| - 0.017 14.9 0.2 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family FeoB_N PF02421.18 gi|385805625|ref|YP_005842023.1| - 0.017 14.6 0.2 1.2 8.7 0.0 2.6 3 0 0 3 3 2 0 Ferrous iron transport protein B FtsK_SpoIIIE PF01580.18 gi|385805625|ref|YP_005842023.1| - 0.022 14.1 0.2 7.2 5.9 0.1 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|385805625|ref|YP_005842023.1| - 0.031 14.5 4.3 0.33 11.2 0.1 2.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|385805625|ref|YP_005842023.1| - 0.057 13.4 1.7 0.64 10.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|385805625|ref|YP_005842023.1| - 0.058 13.1 0.1 13 5.5 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RecA PF00154.21 gi|385805625|ref|YP_005842023.1| - 0.081 12.4 0.1 0.65 9.4 0.0 2.0 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_11 PF13086.6 gi|385805625|ref|YP_005842023.1| - 0.11 12.2 0.0 14 5.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain Septin PF00735.18 gi|385805625|ref|YP_005842023.1| - 0.14 11.4 1.1 6.8 5.9 0.0 2.8 3 0 0 3 3 3 0 Septin RepB-RCR_reg PF10723.9 gi|385805625|ref|YP_005842023.1| - 0.14 12.1 0.0 2.9 7.9 0.0 2.3 2 0 0 2 2 2 0 Replication regulatory protein RepB DnaB_C PF03796.15 gi|385805625|ref|YP_005842023.1| - 0.14 11.4 0.0 2.1 7.6 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain DMAP1_like PF17024.5 gi|385805625|ref|YP_005842023.1| - 0.22 11.7 0.2 0.22 11.7 0.2 2.4 2 1 0 2 2 2 0 Putative DMAP1-like ATP_bind_1 PF03029.17 gi|385805625|ref|YP_005842023.1| - 0.27 11.0 3.2 3.9 7.2 0.2 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|385805625|ref|YP_005842023.1| - 0.32 10.9 1.8 6.6 6.6 0.4 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF2075 PF09848.9 gi|385805625|ref|YP_005842023.1| - 0.38 9.9 1.2 4.8 6.3 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) SRPRB PF09439.10 gi|385805625|ref|YP_005842023.1| - 0.63 9.4 3.7 6.7 6.1 0.0 2.6 3 0 0 3 3 2 0 Signal recognition particle receptor beta subunit ABC_ATPase PF09818.9 gi|385805625|ref|YP_005842023.1| - 7.2 5.3 8.5 1.4 7.6 0.1 2.5 3 0 0 3 3 2 0 Predicted ATPase of the ABC class MS_channel PF00924.18 gi|385805626|ref|YP_005842024.1| - 2.2e-15 56.7 4.3 2.2e-15 56.7 4.3 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel YajC PF02699.15 gi|385805626|ref|YP_005842024.1| - 6.3 6.7 6.8 2.6 8.0 0.1 2.7 2 0 0 2 2 2 0 Preprotein translocase subunit HAD PF12710.7 gi|385805627|ref|YP_005842025.1| - 3.2e-05 24.4 0.0 7.4e-05 23.2 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385805627|ref|YP_005842025.1| - 0.0038 17.5 0.0 0.0048 17.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|385805627|ref|YP_005842025.1| - 0.013 14.9 0.5 0.025 14.0 0.5 1.4 1 1 0 1 1 1 0 Putative Phosphatase Hydrolase_3 PF08282.12 gi|385805627|ref|YP_005842025.1| - 0.015 15.0 0.2 0.053 13.3 0.0 1.8 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase TrkA_N PF02254.18 gi|385805628|ref|YP_005842026.1| - 2.9e-16 59.7 0.1 5.9e-16 58.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain Glycos_transf_2 PF00535.26 gi|385805629|ref|YP_005842027.1| - 6.4e-19 68.4 0.0 8.8e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385805629|ref|YP_005842027.1| - 0.004 17.1 0.0 0.0058 16.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385805629|ref|YP_005842027.1| - 0.0074 15.8 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|385805629|ref|YP_005842027.1| - 0.009 16.5 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 UPF0223 PF05256.12 gi|385805630|ref|YP_005842028.1| - 0.00081 19.7 2.5 0.00081 19.7 2.5 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0223) YdaS_antitoxin PF15943.5 gi|385805630|ref|YP_005842028.1| - 0.056 13.3 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT RR_TM4-6 PF06459.12 gi|385805630|ref|YP_005842028.1| - 9 6.0 18.7 13 5.6 18.7 1.3 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 MFS_1 PF07690.16 gi|385805631|ref|YP_005842029.1| - 3.6e-06 26.1 48.7 5.7e-05 22.2 39.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily H_PPase PF03030.16 gi|385805632|ref|YP_005842030.1| - 1.6e-238 793.7 32.2 1.8e-238 793.5 32.2 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase TMEM141 PF15110.6 gi|385805632|ref|YP_005842030.1| - 5.3 7.7 5.9 44 4.7 0.2 4.1 3 1 1 4 4 4 0 TMEM141 protein family Methyltransf_31 PF13847.6 gi|385805633|ref|YP_005842031.1| - 1.1e-08 35.0 0.0 1.3e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805633|ref|YP_005842031.1| - 5.9e-06 26.2 0.0 8.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385805633|ref|YP_005842031.1| - 4e-05 24.3 0.0 6.3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385805633|ref|YP_005842031.1| - 4.3e-05 24.1 0.0 5.8e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385805633|ref|YP_005842031.1| - 5.5e-05 23.8 0.0 7.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|385805633|ref|YP_005842031.1| - 0.00022 20.4 0.0 0.00028 20.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|385805633|ref|YP_005842031.1| - 0.0003 20.6 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|385805633|ref|YP_005842031.1| - 0.0016 17.8 0.0 0.0021 17.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|385805633|ref|YP_005842031.1| - 0.004 17.1 0.0 0.0061 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385805633|ref|YP_005842031.1| - 0.0044 16.6 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.16 gi|385805633|ref|YP_005842031.1| - 0.018 14.8 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein DREV PF05219.12 gi|385805633|ref|YP_005842031.1| - 0.032 13.3 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF938 PF06080.12 gi|385805633|ref|YP_005842031.1| - 0.045 13.5 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) AdoMet_MTase PF07757.13 gi|385805633|ref|YP_005842031.1| - 0.049 14.0 0.0 9.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase Methyltransf_9 PF08003.11 gi|385805633|ref|YP_005842031.1| - 0.1 11.5 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) NTP_transferase PF00483.23 gi|385805634|ref|YP_005842032.1| - 1.2e-36 126.6 0.0 1.4e-36 126.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385805634|ref|YP_005842032.1| - 3.1e-09 37.4 0.0 3.9e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Ribosomal_S10 PF00338.22 gi|385805636|ref|YP_005842034.1| - 3.9e-28 97.5 0.0 4.4e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|385805636|ref|YP_005842034.1| - 0.06 14.2 0.0 0.11 13.3 0.0 1.4 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|385805637|ref|YP_005842035.1| - 2.7e-54 183.7 0.0 4.5e-54 183.0 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|385805637|ref|YP_005842035.1| - 3.2e-36 124.0 0.1 3.1e-35 120.9 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|385805637|ref|YP_005842035.1| - 2.8e-16 59.7 3.1 3e-16 59.6 1.4 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|385805637|ref|YP_005842035.1| - 9.3e-05 22.3 1.5 0.00035 20.4 1.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|385805637|ref|YP_005842035.1| - 0.0002 21.4 0.0 0.0019 18.3 0.0 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase SepF PF04472.12 gi|385805637|ref|YP_005842035.1| - 0.046 14.0 0.1 0.74 10.1 0.0 2.5 2 0 0 2 2 2 0 Cell division protein SepF Amelogenin PF02948.15 gi|385805637|ref|YP_005842035.1| - 0.12 13.0 0.4 0.24 12.0 0.1 1.6 2 0 0 2 2 2 0 Amelogenin TetR_C_2 PF08361.11 gi|385805637|ref|YP_005842035.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Dynamin_N PF00350.23 gi|385805637|ref|YP_005842035.1| - 0.19 11.8 0.3 27 4.8 0.0 2.7 2 1 0 3 3 3 0 Dynamin family Ribosomal_S7 PF00177.21 gi|385805638|ref|YP_005842036.1| - 6.2e-43 146.0 0.2 7.8e-43 145.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e HMGL-like PF00682.19 gi|385805639|ref|YP_005842037.1| - 3.4e-41 141.6 0.0 4.3e-41 141.2 0.0 1.1 1 0 0 1 1 1 1 HMGL-like PYC_OADA PF02436.18 gi|385805639|ref|YP_005842037.1| - 3.1e-39 134.8 0.0 6.3e-39 133.8 0.0 1.6 1 0 0 1 1 1 1 Conserved carboxylase domain PEP_mutase PF13714.6 gi|385805639|ref|YP_005842037.1| - 0.022 14.2 0.0 0.047 13.1 0.0 1.6 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.21 gi|385805639|ref|YP_005842037.1| - 0.062 12.8 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein DNase-RNase PF02577.14 gi|385805640|ref|YP_005842038.1| - 5.2e-05 22.9 0.1 6.1e-05 22.7 0.1 1.3 1 1 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.25 gi|385805641|ref|YP_005842039.1| - 1.9e-48 162.8 0.9 2.3e-48 162.5 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|385805642|ref|YP_005842040.1| - 3.6e-22 78.0 6.8 9.8e-16 57.4 3.4 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|385805642|ref|YP_005842040.1| - 4.1e-13 49.2 4.9 2.6e-12 46.7 1.9 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|385805642|ref|YP_005842040.1| - 7.6e-09 35.3 1.0 4.8e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|385805642|ref|YP_005842040.1| - 9.8e-06 25.3 3.4 0.00055 19.7 1.1 2.6 2 1 0 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|385805643|ref|YP_005842041.1| - 1.5e-21 75.9 0.0 1.6e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|385805644|ref|YP_005842042.1| - 2.8e-57 194.2 3.2 5.2e-57 193.3 3.2 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 ACR_tran PF00873.19 gi|385805644|ref|YP_005842042.1| - 0.0014 16.4 0.1 0.002 15.9 0.1 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family RNA_pol_Rpb1_7 PF04990.12 gi|385805644|ref|YP_005842042.1| - 0.021 14.8 0.8 0.078 13.0 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase Rpb1, domain 7 RNA_pol_Rpb1_1 PF04997.12 gi|385805645|ref|YP_005842043.1| - 3.9e-101 338.5 0.0 6.5e-101 337.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|385805645|ref|YP_005842043.1| - 2.5e-73 245.8 0.0 4.4e-73 245.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|385805645|ref|YP_005842043.1| - 8.5e-36 123.3 0.0 1.4e-35 122.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|385805645|ref|YP_005842043.1| - 8.2e-32 109.4 0.2 6.5e-31 106.5 0.0 2.2 1 1 1 2 2 2 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|385805645|ref|YP_005842043.1| - 2.5e-22 79.6 0.0 5e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-FPG_IleRS PF06827.14 gi|385805645|ref|YP_005842043.1| - 0.0017 18.2 1.7 0.51 10.2 0.1 2.7 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|385805645|ref|YP_005842043.1| - 0.0082 16.2 0.9 0.48 10.6 0.1 2.7 2 0 0 2 2 2 1 Zinc ribbon domain PhoU_div PF01865.16 gi|385805645|ref|YP_005842043.1| - 0.028 13.8 0.3 0.048 13.0 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF47 DZR PF12773.7 gi|385805645|ref|YP_005842043.1| - 0.054 13.5 1.4 2 8.5 0.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-Di19 PF05605.12 gi|385805645|ref|YP_005842043.1| - 0.28 11.5 1.1 16 5.9 0.0 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.6 gi|385805645|ref|YP_005842043.1| - 0.6 9.6 9.7 2.2 7.8 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|385805645|ref|YP_005842043.1| - 0.85 9.6 2.4 11 6.1 0.1 2.6 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1595 PF12760.7 gi|385805645|ref|YP_005842043.1| - 1.5 8.8 8.5 1.5 8.9 0.1 3.2 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|385805645|ref|YP_005842043.1| - 1.9 9.2 4.4 10 6.9 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|385805645|ref|YP_005842043.1| - 2.5 8.0 9.8 9.8 6.0 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|385805645|ref|YP_005842043.1| - 4 7.9 5.9 30 5.1 0.1 3.7 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 RNA_pol_Rpb2_6 PF00562.28 gi|385805646|ref|YP_005842044.1| - 1.6e-131 439.0 0.0 2.4e-131 438.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|385805646|ref|YP_005842044.1| - 2.7e-56 190.3 0.1 4.6e-56 189.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|385805646|ref|YP_005842044.1| - 1.3e-31 109.7 0.0 2.2e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|385805646|ref|YP_005842044.1| - 5.4e-29 100.4 0.0 1e-28 99.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|385805646|ref|YP_005842044.1| - 1e-26 92.9 0.0 2.5e-26 91.6 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|385805646|ref|YP_005842044.1| - 5e-22 78.0 0.6 1.2e-21 76.7 0.6 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|385805646|ref|YP_005842044.1| - 4.9e-11 43.0 0.0 1.2e-10 41.8 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 AbiEi_4 PF13338.6 gi|385805646|ref|YP_005842044.1| - 0.014 15.5 0.3 1.9 8.7 0.0 3.2 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin PFU PF09070.11 gi|385805646|ref|YP_005842044.1| - 0.061 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 PFU (PLAA family ubiquitin binding) RNA_pol_Rpb2_45 PF10385.9 gi|385805646|ref|YP_005842044.1| - 0.16 12.2 1.0 0.71 10.2 0.8 2.3 1 1 0 1 1 1 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb5_C PF01191.19 gi|385805647|ref|YP_005842045.1| - 6.1e-26 90.1 0.2 6.8e-26 89.9 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain AFOR_C PF01314.18 gi|385805648|ref|YP_005842046.1| - 3e-123 411.6 0.0 3.8e-123 411.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|385805648|ref|YP_005842046.1| - 1.9e-75 253.1 0.1 3.4e-75 252.3 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|385805649|ref|YP_005842047.1| - 0.015 15.9 0.0 0.016 15.8 0.0 1.1 1 0 0 1 1 1 0 ThiS family Thiolase_N PF00108.23 gi|385805650|ref|YP_005842048.1| - 1.8e-29 102.9 0.0 4e-29 101.8 0.0 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|385805650|ref|YP_005842048.1| - 3.2e-09 36.5 0.1 7.2e-09 35.3 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|385805650|ref|YP_005842048.1| - 0.0011 18.8 0.0 0.14 12.1 0.0 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|385805650|ref|YP_005842048.1| - 0.002 18.2 0.1 0.03 14.3 0.1 2.4 1 1 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain SspH PF08141.12 gi|385805650|ref|YP_005842048.1| - 0.033 14.3 0.0 0.074 13.2 0.0 1.5 1 0 0 1 1 1 0 Small acid-soluble spore protein H family OB_aCoA_assoc PF01796.17 gi|385805651|ref|YP_005842049.1| - 8.3e-08 32.1 0.0 1.1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|385805651|ref|YP_005842049.1| - 0.0024 17.7 1.6 0.0038 17.1 1.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_13 PF18508.1 gi|385805651|ref|YP_005842049.1| - 0.058 13.0 0.7 0.11 12.1 0.7 1.5 1 0 0 1 1 1 0 Zinc finger domain DUF674 PF05056.12 gi|385805651|ref|YP_005842049.1| - 0.11 11.3 0.9 0.14 11.0 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF674) DUF530 PF04409.12 gi|385805651|ref|YP_005842049.1| - 0.14 10.5 0.6 0.17 10.2 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF530) HTH_OrfB_IS605 PF12323.8 gi|385805652|ref|YP_005842050.1| - 0.026 14.0 0.1 0.034 13.6 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1641 PF07849.11 gi|385805653|ref|YP_005842051.1| - 1e-11 44.5 1.9 3.5e-10 39.6 0.1 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF1641) FANC_SAP PF18081.1 gi|385805653|ref|YP_005842051.1| - 0.012 15.7 0.2 0.033 14.3 0.1 1.8 2 1 0 2 2 2 0 Fanconi anemia-associated nuclease SAP domain DUF2192 PF09958.9 gi|385805653|ref|YP_005842051.1| - 0.043 13.3 0.5 0.056 13.0 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2192) GerD PF17898.1 gi|385805653|ref|YP_005842051.1| - 0.1 12.5 3.6 3.9 7.4 1.0 2.1 1 1 1 2 2 2 0 Spore germination GerD central core domain COMP PF11598.8 gi|385805653|ref|YP_005842051.1| - 4 8.0 6.4 3.7 8.1 0.6 3.0 2 1 1 3 3 3 0 Cartilage oligomeric matrix protein Pyr_redox_2 PF07992.14 gi|385805654|ref|YP_005842052.1| - 7.4e-21 74.6 0.1 3.6e-20 72.4 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|385805654|ref|YP_005842052.1| - 7.5e-06 25.8 2.5 0.069 12.7 2.3 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|385805654|ref|YP_005842052.1| - 8.4e-06 25.1 2.3 0.0095 15.1 0.0 2.5 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|385805654|ref|YP_005842052.1| - 1.9e-05 25.2 2.5 0.0057 17.2 1.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385805654|ref|YP_005842052.1| - 4.3e-05 22.9 0.7 8.6e-05 21.9 0.3 1.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|385805654|ref|YP_005842052.1| - 6e-05 22.4 0.2 0.0036 16.6 0.5 2.1 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|385805654|ref|YP_005842052.1| - 0.0011 18.1 0.2 0.42 9.6 0.0 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|385805654|ref|YP_005842052.1| - 0.0013 17.5 4.9 0.0059 15.3 0.6 2.3 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|385805654|ref|YP_005842052.1| - 0.0019 18.4 0.2 0.0043 17.3 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|385805654|ref|YP_005842052.1| - 0.0026 17.8 0.4 0.39 10.7 0.0 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|385805654|ref|YP_005842052.1| - 0.0069 15.5 0.6 0.012 14.7 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|385805654|ref|YP_005842052.1| - 0.0087 15.0 1.3 0.0098 14.8 0.4 1.5 2 0 0 2 2 2 1 Tryptophan halogenase FAD_oxidored PF12831.7 gi|385805654|ref|YP_005842052.1| - 0.012 14.9 0.6 0.02 14.3 0.6 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|385805654|ref|YP_005842052.1| - 0.024 15.1 0.0 0.076 13.5 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding ApbA PF02558.16 gi|385805654|ref|YP_005842052.1| - 0.031 13.9 0.2 0.077 12.6 0.2 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TusA PF01206.17 gi|385805655|ref|YP_005842053.1| - 2.5e-20 72.1 0.0 2.7e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|385805656|ref|YP_005842054.1| - 8.7e-11 41.9 0.2 1.1e-07 31.9 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|385805656|ref|YP_005842054.1| - 6.5e-07 29.7 0.0 9.8e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family PEPCK_ATP PF01293.20 gi|385805657|ref|YP_005842055.1| - 1.2e-14 53.9 0.0 3e-13 49.3 0.0 2.2 2 0 0 2 2 2 2 Phosphoenolpyruvate carboxykinase DUF1614 PF07758.11 gi|385805658|ref|YP_005842056.1| - 4.3e-47 160.3 12.9 7.1e-47 159.6 12.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Acetyltransf_1 PF00583.25 gi|385805659|ref|YP_005842057.1| - 1.9e-21 76.5 0.2 2.3e-21 76.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|385805659|ref|YP_005842057.1| - 1.3e-17 64.0 0.1 1.6e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|385805659|ref|YP_005842057.1| - 2.1e-15 56.9 0.2 2.7e-15 56.5 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385805659|ref|YP_005842057.1| - 5.8e-10 39.0 0.1 7.9e-10 38.6 0.1 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|385805659|ref|YP_005842057.1| - 1.1e-07 32.1 0.1 1.5e-07 31.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|385805659|ref|YP_005842057.1| - 1.2e-07 31.5 0.0 1.4e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_15 PF17013.5 gi|385805659|ref|YP_005842057.1| - 4.5e-05 23.0 0.2 5.1e-05 22.8 0.2 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_9 PF13527.7 gi|385805659|ref|YP_005842057.1| - 4.5e-05 23.5 0.0 0.00013 22.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|385805659|ref|YP_005842057.1| - 7.9e-05 23.3 0.0 8.9e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|385805659|ref|YP_005842057.1| - 0.00021 21.0 0.0 0.00029 20.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|385805659|ref|YP_005842057.1| - 0.002 18.2 0.1 0.0034 17.5 0.1 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Nitro_FeMo-Co PF02579.17 gi|385805660|ref|YP_005842058.1| - 1.3e-07 31.9 0.0 2.2e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor 4HBT PF03061.22 gi|385805661|ref|YP_005842059.1| - 6.2e-16 58.5 0.0 8.1e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|385805661|ref|YP_005842059.1| - 0.0073 16.6 0.0 0.0087 16.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Peptidase_M19 PF01244.21 gi|385805662|ref|YP_005842060.1| - 1.3e-70 238.1 0.0 1.6e-70 237.8 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Glyco_tranf_2_3 PF13641.6 gi|385805663|ref|YP_005842061.1| - 1.4e-26 93.8 0.0 1.9e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|385805663|ref|YP_005842061.1| - 3.3e-25 89.2 0.9 3.3e-25 89.2 0.9 2.8 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|385805663|ref|YP_005842061.1| - 1.2e-17 64.2 0.0 1.9e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|385805663|ref|YP_005842061.1| - 3.5e-16 59.2 0.0 5.3e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|385805663|ref|YP_005842061.1| - 2e-06 27.5 0.1 4.1e-06 26.5 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.14 gi|385805663|ref|YP_005842061.1| - 3.3e-05 22.6 14.1 0.00023 19.8 10.9 2.7 1 1 1 2 2 2 1 Cellulose synthase SapB_1 PF05184.15 gi|385805663|ref|YP_005842061.1| - 0.25 11.4 0.2 0.52 10.4 0.2 1.5 1 0 0 1 1 1 0 Saposin-like type B, region 1 AAA_31 PF13614.6 gi|385805664|ref|YP_005842062.1| - 6.6e-08 32.7 0.0 1.6e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385805664|ref|YP_005842062.1| - 1.7e-07 31.4 0.0 3.9e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385805664|ref|YP_005842062.1| - 0.0012 18.4 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|385805664|ref|YP_005842062.1| - 0.0021 17.3 1.5 0.067 12.4 0.1 2.8 2 1 1 3 3 3 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|385805664|ref|YP_005842062.1| - 0.067 12.7 0.1 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ FtsX PF02687.21 gi|385805666|ref|YP_005842064.1| - 0.00024 21.5 6.9 0.00024 21.5 6.9 2.2 2 0 0 2 2 2 1 FtsX-like permease family ABC2_membrane_4 PF12730.7 gi|385805666|ref|YP_005842064.1| - 0.008 16.2 7.4 0.011 15.7 7.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|385805666|ref|YP_005842064.1| - 0.051 12.7 16.3 0.078 12.1 16.2 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4079 PF13301.6 gi|385805666|ref|YP_005842064.1| - 0.23 11.6 2.0 0.41 10.8 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) FtsX PF02687.21 gi|385805667|ref|YP_005842065.1| - 0.0061 17.0 1.0 0.0061 17.0 1.0 3.7 2 2 1 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 gi|385805669|ref|YP_005842067.1| - 2.4e-34 118.8 0.1 3.1e-34 118.4 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385805669|ref|YP_005842067.1| - 3.1e-05 24.0 0.9 0.0071 16.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|385805669|ref|YP_005842067.1| - 0.00014 22.3 0.1 0.00019 21.8 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385805669|ref|YP_005842067.1| - 0.0013 18.5 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|385805669|ref|YP_005842067.1| - 0.011 15.2 0.1 0.33 10.4 0.1 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|385805669|ref|YP_005842067.1| - 0.015 15.2 0.0 0.15 12.0 0.0 2.0 1 1 0 2 2 2 0 Rad17 P-loop domain NACHT PF05729.12 gi|385805669|ref|YP_005842067.1| - 0.035 14.0 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|385805669|ref|YP_005842067.1| - 0.035 14.4 0.2 0.3 11.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385805669|ref|YP_005842067.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385805669|ref|YP_005842067.1| - 0.16 11.9 0.1 0.26 11.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase G-alpha PF00503.20 gi|385805669|ref|YP_005842067.1| - 0.2 10.8 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit GRDB PF07355.12 gi|385805670|ref|YP_005842068.1| - 0.091 12.0 0.0 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) RuvA_C PF07499.13 gi|385805670|ref|YP_005842068.1| - 0.097 13.1 0.3 0.74 10.3 0.1 2.4 2 0 0 2 2 2 0 RuvA, C-terminal domain AIRS_C PF02769.22 gi|385805671|ref|YP_005842069.1| - 3.3e-21 76.1 1.1 5.8e-21 75.2 1.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|385805671|ref|YP_005842069.1| - 2.6e-14 53.6 0.0 4.6e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_S49 PF01343.18 gi|385805671|ref|YP_005842069.1| - 0.035 14.0 0.1 0.19 11.7 0.0 2.0 2 0 0 2 2 2 0 Peptidase family S49 Epimerase PF01370.21 gi|385805672|ref|YP_005842070.1| - 6.2e-57 192.8 0.0 7.6e-57 192.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385805672|ref|YP_005842070.1| - 1.9e-53 182.0 0.0 2.2e-53 181.8 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|385805672|ref|YP_005842070.1| - 2.8e-23 82.3 0.0 3.8e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|385805672|ref|YP_005842070.1| - 7.7e-20 71.2 0.0 9.4e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385805672|ref|YP_005842070.1| - 2.6e-18 66.2 0.0 2.9e-17 62.8 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|385805672|ref|YP_005842070.1| - 2.9e-14 52.8 0.3 1.9e-12 46.9 0.3 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|385805672|ref|YP_005842070.1| - 7e-09 35.8 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|385805672|ref|YP_005842070.1| - 1.7e-05 24.8 0.1 8.8e-05 22.5 0.0 2.2 2 1 0 2 2 2 1 KR domain adh_short PF00106.25 gi|385805672|ref|YP_005842070.1| - 7.6e-05 22.2 0.0 0.00037 20.0 0.0 2.1 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.13 gi|385805672|ref|YP_005842070.1| - 0.015 14.9 0.0 0.089 12.3 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family TrkA_N PF02254.18 gi|385805672|ref|YP_005842070.1| - 0.074 13.3 0.0 0.26 11.6 0.0 1.9 1 1 0 1 1 1 0 TrkA-N domain Glycos_transf_2 PF00535.26 gi|385805673|ref|YP_005842071.1| - 2.8e-28 98.9 0.0 4.1e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385805673|ref|YP_005842071.1| - 1e-21 77.9 0.0 2.1e-21 76.9 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|385805673|ref|YP_005842071.1| - 7.2e-12 45.6 0.0 1e-11 45.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|385805673|ref|YP_005842071.1| - 4.6e-08 32.7 0.0 2.1e-07 30.6 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|385805673|ref|YP_005842071.1| - 2.6e-06 27.1 0.0 4.1e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|385805673|ref|YP_005842071.1| - 0.00039 20.9 0.1 0.00067 20.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 YAcAr PF10686.9 gi|385805673|ref|YP_005842071.1| - 0.069 13.1 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family Col_cuticle_N PF01484.17 gi|385805673|ref|YP_005842071.1| - 0.68 10.0 2.5 69 3.6 0.0 2.4 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Glyco_transf_4 PF13439.6 gi|385805674|ref|YP_005842072.1| - 1.5e-30 106.4 1.4 3.8e-30 105.1 1.2 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|385805674|ref|YP_005842072.1| - 1.5e-19 70.2 0.1 2.7e-19 69.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385805674|ref|YP_005842072.1| - 4.4e-17 63.0 0.0 6.7e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|385805674|ref|YP_005842072.1| - 9.7e-14 51.9 0.0 6.6e-13 49.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|385805674|ref|YP_005842072.1| - 2.1e-05 24.6 0.9 5.4e-05 23.2 0.3 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|385805674|ref|YP_005842072.1| - 0.021 14.5 1.1 0.69 9.6 0.0 2.2 1 1 1 2 2 2 0 Starch synthase catalytic domain AP_endonuc_2 PF01261.24 gi|385805674|ref|YP_005842072.1| - 0.023 14.1 0.4 0.56 9.6 0.0 2.7 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Glycos_transf_1 PF00534.20 gi|385805675|ref|YP_005842073.1| - 1.4e-23 83.3 0.0 1.7e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385805675|ref|YP_005842073.1| - 7e-18 65.4 0.0 8.9e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_11 PF08241.12 gi|385805676|ref|YP_005842074.1| - 2.3e-19 69.8 0.0 2.7e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|385805676|ref|YP_005842074.1| - 1e-16 61.1 0.0 1.3e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.6 gi|385805676|ref|YP_005842074.1| - 5.4e-15 55.9 0.0 6.5e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805676|ref|YP_005842074.1| - 6.5e-15 55.3 0.0 7.8e-15 55.1 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385805676|ref|YP_005842074.1| - 2.5e-13 50.6 0.0 3.5e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805676|ref|YP_005842074.1| - 1.3e-12 47.8 0.0 1.9e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385805676|ref|YP_005842074.1| - 2e-07 30.6 0.0 2.6e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_29 PF03141.16 gi|385805676|ref|YP_005842074.1| - 2.4e-06 26.4 0.0 2.6e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Spermine_synth PF01564.17 gi|385805676|ref|YP_005842074.1| - 0.0052 16.2 0.1 0.15 11.4 0.1 2.0 1 1 0 1 1 1 1 Spermine/spermidine synthase domain NodS PF05401.11 gi|385805676|ref|YP_005842074.1| - 0.021 14.4 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 gi|385805676|ref|YP_005842074.1| - 0.042 13.4 0.0 0.081 12.5 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|385805676|ref|YP_005842074.1| - 0.054 12.9 0.0 0.068 12.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|385805676|ref|YP_005842074.1| - 0.19 11.2 0.0 0.67 9.4 0.0 1.8 1 1 1 2 2 2 0 Putative methyltransferase Glycos_transf_1 PF00534.20 gi|385805678|ref|YP_005842076.1| - 1.1e-21 77.1 0.1 4.1e-21 75.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385805678|ref|YP_005842076.1| - 1.8e-19 70.5 0.1 5.7e-18 65.6 0.0 2.4 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385805678|ref|YP_005842076.1| - 1.2e-10 41.7 0.0 4.1e-10 39.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|385805678|ref|YP_005842076.1| - 1.4e-09 38.2 0.0 4.9e-09 36.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385805678|ref|YP_005842076.1| - 0.079 13.4 0.0 0.73 10.3 0.0 2.5 2 2 0 3 3 3 0 Glycosyl transferase 4-like domain Sacchrp_dh_NADP PF03435.18 gi|385805678|ref|YP_005842076.1| - 0.13 12.5 0.0 17 5.7 0.0 2.4 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Glyco_transf_4 PF13439.6 gi|385805679|ref|YP_005842077.1| - 1.2e-10 41.6 0.0 2.8e-10 40.5 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|385805679|ref|YP_005842077.1| - 1.1e-07 31.5 0.0 2.4e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385805679|ref|YP_005842077.1| - 4.1e-06 27.3 0.0 9.3e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|385805679|ref|YP_005842077.1| - 0.0017 18.8 0.0 0.0023 18.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.26 gi|385805680|ref|YP_005842078.1| - 1.4e-23 83.5 0.2 2.3e-23 82.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385805680|ref|YP_005842078.1| - 2.9e-12 47.0 0.0 4.5e-10 39.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|385805680|ref|YP_005842078.1| - 1.9e-11 44.0 0.5 4.8e-11 42.7 0.2 1.9 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|385805680|ref|YP_005842078.1| - 4.4e-05 23.0 0.0 0.0005 19.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|385805680|ref|YP_005842078.1| - 5.8e-05 23.1 3.1 0.00092 19.2 3.1 2.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|385805680|ref|YP_005842078.1| - 0.0022 18.5 0.0 0.0044 17.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|385805682|ref|YP_005842080.1| - 2.1e-25 89.3 0.3 3.3e-25 88.6 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385805682|ref|YP_005842080.1| - 4.1e-12 46.7 0.0 6.9e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385805682|ref|YP_005842080.1| - 7.9e-05 22.7 0.1 0.00016 21.7 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 FMN_red PF03358.15 gi|385805682|ref|YP_005842080.1| - 0.024 14.4 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Glyco_trans_1_2 PF13524.6 gi|385805682|ref|YP_005842080.1| - 0.17 12.3 0.0 0.35 11.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 TM2 PF05154.16 gi|385805684|ref|YP_005842082.1| - 1.7 9.0 10.9 0.46 10.9 6.4 2.5 2 0 0 2 2 2 0 TM2 domain Longin PF13774.6 gi|385805685|ref|YP_005842083.1| - 0.023 14.7 0.1 0.37 10.9 0.0 2.2 2 0 0 2 2 2 0 Regulated-SNARE-like domain CbiQ PF02361.16 gi|385805685|ref|YP_005842083.1| - 0.084 12.5 1.6 0.1 12.2 1.6 1.1 1 0 0 1 1 1 0 Cobalt transport protein CNF1 PF05785.12 gi|385805685|ref|YP_005842083.1| - 0.16 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Rho-activating domain of cytotoxic necrotizing factor Glycos_transf_1 PF00534.20 gi|385805686|ref|YP_005842084.1| - 6.3e-24 84.4 0.0 1e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385805686|ref|YP_005842084.1| - 2.2e-17 63.7 0.0 4.1e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385805686|ref|YP_005842084.1| - 5.8e-06 26.4 0.0 0.00012 22.2 0.0 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|385805686|ref|YP_005842084.1| - 0.0013 19.2 0.0 0.0033 17.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|385805686|ref|YP_005842084.1| - 0.017 15.5 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 SPAM PF02090.15 gi|385805686|ref|YP_005842084.1| - 0.045 13.6 0.1 0.22 11.3 0.0 2.1 2 0 0 2 2 2 0 Salmonella surface presentation of antigen gene type M protein PS_pyruv_trans PF04230.13 gi|385805687|ref|YP_005842085.1| - 1.1e-26 94.4 1.6 2.1e-26 93.5 1.6 1.4 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Heliorhodopsin PF18761.1 gi|385805687|ref|YP_005842085.1| - 0.16 11.3 1.3 0.19 11.0 0.4 1.6 2 0 0 2 2 2 0 Heliorhodopsin Epimerase_2 PF02350.19 gi|385805687|ref|YP_005842085.1| - 0.22 10.3 0.0 0.61 8.9 0.0 1.6 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase FrhB_FdhB_C PF04432.13 gi|385805688|ref|YP_005842086.1| - 6.8e-30 103.9 0.0 1.2e-29 103.2 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|385805688|ref|YP_005842086.1| - 1.2e-17 63.8 0.0 2.5e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|385805688|ref|YP_005842086.1| - 1.6e-11 43.5 10.9 4e-06 26.4 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385805688|ref|YP_005842086.1| - 7.5e-10 39.3 4.4 1.8e-09 38.1 4.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385805688|ref|YP_005842086.1| - 1.1e-08 34.8 11.6 0.00037 20.5 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|385805688|ref|YP_005842086.1| - 8.5e-07 28.7 11.5 0.0017 18.3 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|385805688|ref|YP_005842086.1| - 1.6e-06 28.2 5.3 2.3e-06 27.6 4.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385805688|ref|YP_005842086.1| - 4.3e-06 26.8 8.6 1.5e-05 25.1 8.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385805688|ref|YP_005842086.1| - 5.7e-06 26.3 9.9 0.00027 21.0 11.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|385805688|ref|YP_005842086.1| - 0.00011 22.7 5.6 0.033 14.7 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|385805688|ref|YP_005842086.1| - 0.0016 18.9 9.7 0.0094 16.4 0.1 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385805688|ref|YP_005842086.1| - 0.0035 17.7 15.9 0.041 14.4 1.2 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|385805688|ref|YP_005842086.1| - 0.0041 17.6 5.6 0.41 11.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|385805688|ref|YP_005842086.1| - 0.035 15.1 1.0 0.035 15.1 1.0 2.6 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|385805688|ref|YP_005842086.1| - 0.046 14.5 3.3 4.9 8.0 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|385805688|ref|YP_005842086.1| - 0.048 14.6 3.3 0.048 14.6 3.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|385805688|ref|YP_005842086.1| - 0.48 11.3 5.6 6.3 7.7 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain TUG-UBL1 PF11470.8 gi|385805689|ref|YP_005842087.1| - 0.13 12.5 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 TUG ubiquitin-like domain DUF72 PF01904.18 gi|385805691|ref|YP_005842089.1| - 0.017 15.2 0.0 0.018 15.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF72 Epimerase PF01370.21 gi|385805693|ref|YP_005842091.1| - 3.3e-49 167.5 0.0 4e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385805693|ref|YP_005842091.1| - 1.2e-47 163.0 0.0 1.4e-47 162.7 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|385805693|ref|YP_005842091.1| - 5.7e-28 97.7 0.0 7.3e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|385805693|ref|YP_005842091.1| - 5.4e-22 78.2 0.0 6.5e-22 78.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|385805693|ref|YP_005842091.1| - 2.6e-13 49.8 0.7 2.6e-10 39.9 0.7 2.5 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|385805693|ref|YP_005842091.1| - 1.4e-12 47.3 0.0 4.8e-12 45.6 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|385805693|ref|YP_005842091.1| - 2.6e-09 37.2 0.0 3.3e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|385805693|ref|YP_005842091.1| - 5.6e-07 29.2 0.1 2.8e-05 23.7 0.1 2.2 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|385805693|ref|YP_005842091.1| - 3.1e-05 23.7 0.4 3.9e-05 23.3 0.4 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|385805693|ref|YP_005842091.1| - 0.0005 20.0 0.9 0.0016 18.4 0.9 1.7 1 1 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|385805694|ref|YP_005842092.1| - 0.12 11.8 0.0 0.16 11.3 0.0 1.4 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase NTP_transf_5 PF14907.6 gi|385805695|ref|YP_005842093.1| - 3.2e-09 36.8 0.0 6.2e-09 35.8 0.0 1.4 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase AdoMet_dc PF02675.15 gi|385805695|ref|YP_005842093.1| - 0.072 13.4 0.1 0.54 10.5 0.0 2.2 2 1 1 3 3 3 0 S-adenosylmethionine decarboxylase PBP_like_2 PF12849.7 gi|385805696|ref|YP_005842094.1| - 3.1e-51 174.7 5.6 4.6e-51 174.2 5.6 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|385805696|ref|YP_005842094.1| - 2.6e-14 53.9 5.3 1.3e-12 48.4 5.3 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|385805696|ref|YP_005842094.1| - 8.3e-06 25.1 0.0 1.7e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|385805697|ref|YP_005842095.1| - 1.7e-11 44.2 17.2 1.7e-11 44.2 17.2 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|385805698|ref|YP_005842096.1| - 1.3e-16 60.8 15.1 1.3e-16 60.8 15.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DHHC PF01529.20 gi|385805698|ref|YP_005842096.1| - 0.62 10.2 6.2 2.8 8.0 0.2 2.6 2 1 1 3 3 3 0 DHHC palmitoyltransferase ABC_tran PF00005.27 gi|385805699|ref|YP_005842097.1| - 4e-34 118.1 0.0 5.2e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385805699|ref|YP_005842097.1| - 2e-09 37.7 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385805699|ref|YP_005842097.1| - 1.8e-06 27.6 0.1 0.011 15.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|385805699|ref|YP_005842097.1| - 5e-05 23.0 0.5 9.8e-05 22.0 0.3 1.6 1 1 1 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|385805699|ref|YP_005842097.1| - 0.00056 19.7 0.4 0.023 14.4 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|385805699|ref|YP_005842097.1| - 0.00071 19.9 0.0 0.002 18.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|385805699|ref|YP_005842097.1| - 0.0011 19.0 0.0 0.0025 17.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|385805699|ref|YP_005842097.1| - 0.0016 19.0 0.0 0.0059 17.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|385805699|ref|YP_005842097.1| - 0.0072 16.4 0.3 0.095 12.8 0.1 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain NB-ARC PF00931.22 gi|385805699|ref|YP_005842097.1| - 0.014 14.6 0.0 0.021 14.0 0.0 1.3 1 1 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|385805699|ref|YP_005842097.1| - 0.021 15.2 0.1 0.049 14.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain TniB PF05621.11 gi|385805699|ref|YP_005842097.1| - 0.026 13.9 0.1 3 7.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein G-alpha PF00503.20 gi|385805699|ref|YP_005842097.1| - 0.077 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_25 PF13481.6 gi|385805699|ref|YP_005842097.1| - 0.11 12.0 0.0 3.8 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|385805699|ref|YP_005842097.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain PIN PF01850.21 gi|385805700|ref|YP_005842098.1| - 1e-07 32.4 2.5 1.8e-07 31.7 2.5 1.4 1 1 0 1 1 1 1 PIN domain MoaC PF01967.21 gi|385805700|ref|YP_005842098.1| - 0.049 13.7 0.1 0.59 10.2 0.0 2.0 1 1 1 2 2 2 0 MoaC family YpjP PF14005.6 gi|385805701|ref|YP_005842099.1| - 0.0031 17.6 0.5 0.0033 17.5 0.5 1.1 1 0 0 1 1 1 1 YpjP-like protein GerPC PF10737.9 gi|385805701|ref|YP_005842099.1| - 0.0076 16.3 0.2 0.0094 16.0 0.2 1.2 1 0 0 1 1 1 1 Spore germination protein GerPC LEM PF03020.15 gi|385805701|ref|YP_005842099.1| - 0.026 14.1 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 LEM domain Pox_VLTF3 PF04947.14 gi|385805701|ref|YP_005842099.1| - 0.048 13.4 0.5 0.053 13.2 0.5 1.0 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Imm70 PF15601.6 gi|385805701|ref|YP_005842099.1| - 0.056 13.0 0.1 0.062 12.9 0.1 1.1 1 0 0 1 1 1 0 Immunity protein 70 tRNA_NucTran2_2 PF13735.6 gi|385805701|ref|YP_005842099.1| - 0.066 13.2 0.2 0.082 12.9 0.2 1.2 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative DUF4733 PF15878.5 gi|385805701|ref|YP_005842099.1| - 0.07 13.6 0.3 1.8 9.1 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4733) FlaC_arch PF05377.11 gi|385805701|ref|YP_005842099.1| - 0.59 10.6 5.0 1.5 9.2 2.3 2.5 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) Glycos_transf_2 PF00535.26 gi|385805704|ref|YP_005842102.1| - 4.3e-13 49.4 0.0 6.9e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385805704|ref|YP_005842102.1| - 2.7e-08 34.0 0.0 4.7e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 COX6C PF02937.15 gi|385805704|ref|YP_005842102.1| - 0.036 14.2 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIc Radical_SAM PF04055.21 gi|385805706|ref|YP_005842104.1| - 2e-19 70.6 0.0 2.8e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|385805706|ref|YP_005842104.1| - 1.8e-08 34.8 0.0 3.4e-08 33.8 0.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|385805706|ref|YP_005842104.1| - 2.5e-06 27.6 0.0 3.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Mst1_SARAH PF11629.8 gi|385805706|ref|YP_005842104.1| - 0.15 12.1 0.2 0.35 11.0 0.2 1.5 1 0 0 1 1 1 0 C terminal SARAH domain of Mst1 7TM_GPCR_Srz PF10325.9 gi|385805708|ref|YP_005842106.1| - 5.4 6.3 8.5 6.5 6.0 0.6 2.2 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srz Cullin_Nedd8 PF10557.9 gi|385805709|ref|YP_005842107.1| - 0.003 17.6 0.1 0.0036 17.3 0.1 1.2 1 0 0 1 1 1 1 Cullin protein neddylation domain RHH_8 PF17723.1 gi|385805711|ref|YP_005842109.1| - 0.0016 18.6 0.0 0.0016 18.6 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_1 PF01402.21 gi|385805711|ref|YP_005842109.1| - 0.0024 17.8 0.0 0.003 17.4 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family TYW3 PF02676.14 gi|385805712|ref|YP_005842110.1| - 1.7e-38 132.1 0.0 2.7e-38 131.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase TYW3 DUF2691 PF10903.8 gi|385805712|ref|YP_005842110.1| - 0.055 13.3 0.0 0.3 11.0 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2691) UbiA PF01040.18 gi|385805713|ref|YP_005842111.1| - 2.6e-24 85.9 0.6 3.6e-24 85.4 0.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Transgly_assoc PF04226.13 gi|385805713|ref|YP_005842111.1| - 0.084 13.2 4.7 0.17 12.2 4.7 1.5 1 0 0 1 1 1 0 Transglycosylase associated protein DcuC PF03606.15 gi|385805714|ref|YP_005842112.1| - 0.0094 14.4 7.4 0.01 14.3 7.4 1.0 1 0 0 1 1 1 1 C4-dicarboxylate anaerobic carrier UbiA PF01040.18 gi|385805714|ref|YP_005842112.1| - 0.021 14.1 9.0 0.0097 15.2 7.1 1.4 1 1 0 1 1 1 0 UbiA prenyltransferase family SID-1_RNA_chan PF13965.6 gi|385805714|ref|YP_005842112.1| - 0.44 8.9 5.0 0.44 8.9 5.0 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Fer2_2 PF01799.20 gi|385805715|ref|YP_005842113.1| - 1.6e-28 98.5 1.5 1.9e-28 98.3 0.1 1.7 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|385805715|ref|YP_005842113.1| - 1.3e-08 34.6 2.9 1.8e-08 34.2 0.4 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|385805715|ref|YP_005842113.1| - 8.3e-05 22.6 0.1 0.00014 21.8 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|385805715|ref|YP_005842113.1| - 0.0068 16.4 0.9 0.086 12.9 0.9 2.3 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|385805716|ref|YP_005842114.1| - 3.8e-35 121.1 0.0 6.5e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|385805716|ref|YP_005842114.1| - 4.3e-12 46.1 0.1 9e-12 45.1 0.1 1.6 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain CLU_N PF15044.6 gi|385805716|ref|YP_005842114.1| - 0.031 14.6 0.3 0.06 13.7 0.3 1.4 1 0 0 1 1 1 0 Mitochondrial function, CLU-N-term Ald_Xan_dh_C2 PF02738.18 gi|385805717|ref|YP_005842115.1| - 3.6e-12 45.6 0.0 5.6e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase ELFV_dehydrog_N PF02812.18 gi|385805720|ref|YP_005842118.1| - 5e-14 52.3 0.0 5e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Aminotran_1_2 PF00155.21 gi|385805721|ref|YP_005842119.1| - 2e-41 142.4 0.0 2.3e-41 142.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|385805721|ref|YP_005842119.1| - 0.11 11.1 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|385805721|ref|YP_005842119.1| - 0.13 11.5 0.0 0.18 11.1 0.0 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase DUF5320 PF17253.2 gi|385805723|ref|YP_005842121.1| - 3.9e-06 27.9 1.6 3.7e-05 24.7 1.6 1.9 1 1 0 1 1 1 1 Family of unknown function (DUF5320) Glycos_transf_2 PF00535.26 gi|385805725|ref|YP_005842123.1| - 5e-15 55.7 0.0 7.4e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|385805725|ref|YP_005842123.1| - 1.1e-11 45.1 0.0 2.5e-11 43.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|385805725|ref|YP_005842123.1| - 0.015 15.0 0.1 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family DUF5313 PF17240.2 gi|385805725|ref|YP_005842123.1| - 0.11 12.9 0.0 0.25 11.8 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5313) Glycos_transf_1 PF00534.20 gi|385805727|ref|YP_005842125.1| - 2.4e-22 79.3 0.5 5.4e-22 78.1 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|385805727|ref|YP_005842125.1| - 9.6e-11 42.2 0.0 2.1e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385805727|ref|YP_005842125.1| - 0.0014 18.7 0.0 0.018 15.0 0.0 2.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|385805727|ref|YP_005842125.1| - 0.15 12.5 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Nitro_FeMo-Co PF02579.17 gi|385805728|ref|YP_005842126.1| - 3.6e-14 52.8 1.0 4.9e-14 52.4 1.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.23 gi|385805729|ref|YP_005842127.1| - 6.7e-24 84.4 0.0 8.9e-24 84.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385805729|ref|YP_005842127.1| - 1.4e-15 57.4 0.3 2.4e-10 40.3 0.0 2.9 2 2 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|385805729|ref|YP_005842127.1| - 4.1e-10 39.1 11.5 8.2e-05 22.2 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain CBP_BcsQ PF06564.12 gi|385805729|ref|YP_005842127.1| - 3.1e-09 36.7 0.0 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|385805729|ref|YP_005842127.1| - 1.5e-08 34.5 0.1 0.0014 18.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|385805729|ref|YP_005842127.1| - 2.6e-07 30.8 0.0 4.7e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_10 PF13237.6 gi|385805729|ref|YP_005842127.1| - 5.1e-07 29.7 1.9 0.0036 17.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385805729|ref|YP_005842127.1| - 8.7e-07 29.4 9.5 1.9e-06 28.3 9.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385805729|ref|YP_005842127.1| - 1.1e-06 29.5 2.1 0.015 16.2 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|385805729|ref|YP_005842127.1| - 1.3e-06 28.1 10.3 0.0031 17.5 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain ArsA_ATPase PF02374.15 gi|385805729|ref|YP_005842127.1| - 2.1e-06 27.2 0.0 6.8e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_9 PF13187.6 gi|385805729|ref|YP_005842127.1| - 1.2e-05 25.4 9.3 0.00013 22.0 10.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385805729|ref|YP_005842127.1| - 1.9e-05 24.7 9.1 2.9e-05 24.1 7.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385805729|ref|YP_005842127.1| - 0.00014 21.8 13.0 0.025 14.6 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|385805729|ref|YP_005842127.1| - 0.00089 19.2 0.3 1.1 9.1 0.1 2.2 2 0 0 2 2 2 2 RsgA GTPase MipZ PF09140.11 gi|385805729|ref|YP_005842127.1| - 0.0017 17.7 0.0 0.0047 16.3 0.0 1.7 2 1 0 2 2 2 1 ATPase MipZ GTP_EFTU PF00009.27 gi|385805729|ref|YP_005842127.1| - 0.005 16.4 0.3 0.073 12.6 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain ATP_bind_1 PF03029.17 gi|385805729|ref|YP_005842127.1| - 0.0061 16.4 0.0 0.83 9.4 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|385805729|ref|YP_005842127.1| - 0.0066 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|385805729|ref|YP_005842127.1| - 0.023 13.7 0.0 0.043 12.8 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|385805729|ref|YP_005842127.1| - 0.079 12.8 1.1 5.9 6.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|385805729|ref|YP_005842127.1| - 0.099 12.3 0.2 7.6 6.1 0.0 2.8 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain B12-binding PF02310.19 gi|385805729|ref|YP_005842127.1| - 0.12 12.4 0.0 0.8 9.8 0.0 2.1 2 0 0 2 2 2 0 B12 binding domain Fer4_22 PF17179.4 gi|385805729|ref|YP_005842127.1| - 0.15 12.9 5.3 1.3 9.9 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain MobB PF03205.14 gi|385805729|ref|YP_005842127.1| - 0.16 11.9 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SAM_MT PF04445.13 gi|385805729|ref|YP_005842127.1| - 0.18 11.2 0.0 0.25 10.7 0.0 1.1 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase NTPase_1 PF03266.15 gi|385805729|ref|YP_005842127.1| - 0.18 11.7 0.0 0.82 9.6 0.0 2.0 2 0 0 2 2 2 0 NTPase Glyco_hydro_20 PF00728.22 gi|385805729|ref|YP_005842127.1| - 0.19 11.1 0.1 0.38 10.1 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 20, catalytic domain Fer4_17 PF13534.6 gi|385805729|ref|YP_005842127.1| - 0.95 10.1 11.4 2.4 8.7 2.2 2.4 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385805729|ref|YP_005842127.1| - 1.1 10.4 17.7 2 9.6 4.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385805729|ref|YP_005842127.1| - 1.1 9.7 12.5 2.1 8.9 3.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385805729|ref|YP_005842127.1| - 1.8 9.3 12.1 0.44 11.2 3.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain CbiA PF01656.23 gi|385805730|ref|YP_005842128.1| - 2.2e-19 69.8 0.0 2.8e-19 69.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|385805730|ref|YP_005842128.1| - 8.4e-14 51.6 0.2 4.6e-07 29.5 0.1 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4 PF00037.27 gi|385805730|ref|YP_005842128.1| - 3.2e-10 39.4 14.4 2.5e-05 23.9 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385805730|ref|YP_005842128.1| - 8.6e-10 38.3 11.5 0.00013 21.9 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|385805730|ref|YP_005842128.1| - 7.9e-08 31.9 10.5 0.00092 19.2 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385805730|ref|YP_005842128.1| - 9.8e-08 32.5 5.4 0.0032 18.0 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385805730|ref|YP_005842128.1| - 7.7e-07 29.1 7.3 1.3e-06 28.4 7.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_NifH PF00142.18 gi|385805730|ref|YP_005842128.1| - 1e-06 28.5 0.0 0.02 14.4 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_9 PF13187.6 gi|385805730|ref|YP_005842128.1| - 1.5e-06 28.3 31.5 2.5e-05 24.3 11.5 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385805730|ref|YP_005842128.1| - 3.7e-06 27.8 9.4 0.0015 19.4 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain AAA_31 PF13614.6 gi|385805730|ref|YP_005842128.1| - 3.4e-05 23.8 0.0 0.00047 20.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain Fer4_10 PF13237.6 gi|385805730|ref|YP_005842128.1| - 5.4e-05 23.2 12.6 0.0026 17.8 13.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain MipZ PF09140.11 gi|385805730|ref|YP_005842128.1| - 0.00073 18.9 0.0 0.0044 16.3 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ Fer4_4 PF12800.7 gi|385805730|ref|YP_005842128.1| - 0.0011 19.2 13.5 0.086 13.4 4.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385805730|ref|YP_005842128.1| - 0.0078 16.7 11.3 4.4 7.9 11.3 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|385805730|ref|YP_005842128.1| - 0.015 14.9 0.1 0.033 13.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Fer4_15 PF13459.6 gi|385805730|ref|YP_005842128.1| - 0.036 14.8 7.3 0.15 12.8 1.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CBP_BcsQ PF06564.12 gi|385805730|ref|YP_005842128.1| - 0.046 13.2 0.0 4.7 6.6 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ Fer4_8 PF13183.6 gi|385805730|ref|YP_005842128.1| - 0.057 13.9 11.1 0.78 10.2 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|385805730|ref|YP_005842128.1| - 0.082 13.8 5.7 0.53 11.2 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Tir_receptor_N PF07490.11 gi|385805730|ref|YP_005842128.1| - 0.084 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus ArsA_ATPase PF02374.15 gi|385805730|ref|YP_005842128.1| - 0.13 11.5 0.2 0.28 10.3 0.2 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase Fer4_3 PF12798.7 gi|385805730|ref|YP_005842128.1| - 0.39 11.7 17.1 1.2 10.2 4.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|385805730|ref|YP_005842128.1| - 1.9 9.1 13.2 4.2 8.0 3.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Tnp_22_trimer PF17489.2 gi|385805731|ref|YP_005842129.1| - 0.011 15.7 0.9 0.023 14.6 0.9 1.5 1 0 0 1 1 1 0 L1 transposable element trimerization domain DUF4065 PF13274.6 gi|385805731|ref|YP_005842129.1| - 0.096 13.6 0.0 0.12 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) SDH_sah PF01972.16 gi|385805732|ref|YP_005842130.1| - 6.6e-116 386.3 0.5 7.2e-116 386.2 0.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|385805732|ref|YP_005842130.1| - 0.00047 20.1 0.4 0.0046 16.9 0.0 2.4 2 1 1 3 3 3 1 Clp protease Peptidase_S49 PF01343.18 gi|385805732|ref|YP_005842130.1| - 0.0015 18.5 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 Dimerisation PF08100.11 gi|385805732|ref|YP_005842130.1| - 0.022 14.8 0.6 0.056 13.5 0.1 2.0 2 0 0 2 2 2 0 Dimerisation domain MaAIMP_sms PF16951.5 gi|385805732|ref|YP_005842130.1| - 0.045 13.5 0.1 1.2 9.0 0.1 2.5 2 0 0 2 2 2 0 Putative methionine and alanine importer, small subunit CDKN3 PF05706.12 gi|385805732|ref|YP_005842130.1| - 0.051 13.2 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Lactamase_B PF00753.27 gi|385805733|ref|YP_005842131.1| - 1.1e-06 28.8 0.0 1.8e-06 28.1 0.0 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385805733|ref|YP_005842131.1| - 0.0013 18.3 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain CARDB PF07705.11 gi|385805737|ref|YP_005842135.1| - 0.015 15.5 3.8 0.21 11.9 3.8 2.1 1 1 0 1 1 1 0 CARDB Pilin_N PF07790.11 gi|385805737|ref|YP_005842135.1| - 0.47 11.4 9.7 0.37 11.7 6.9 2.2 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal T2SSF PF00482.23 gi|385805739|ref|YP_005842137.1| - 4.2e-23 81.6 9.2 2.7e-12 46.7 0.0 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|385805739|ref|YP_005842137.1| - 0.02 13.7 0.3 0.02 13.7 0.3 3.9 3 1 1 4 4 4 0 Predicted membrane protein (DUF2207) DUF3483 PF11982.8 gi|385805739|ref|YP_005842137.1| - 3 7.4 8.7 0.73 9.4 4.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3483) T2SSE PF00437.20 gi|385805740|ref|YP_005842138.1| - 1.2e-47 162.2 0.0 2e-47 161.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|385805740|ref|YP_005842138.1| - 0.0025 18.3 0.0 0.0053 17.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|385805740|ref|YP_005842138.1| - 0.0033 17.1 0.1 0.0068 16.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|385805740|ref|YP_005842138.1| - 0.0038 17.6 0.0 0.0069 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|385805740|ref|YP_005842138.1| - 0.015 14.6 0.4 0.051 12.9 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.18 gi|385805740|ref|YP_005842138.1| - 0.026 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase FBP_C PF16571.5 gi|385805740|ref|YP_005842138.1| - 0.063 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 FBP C-terminal treble-clef zinc-finger SRP54 PF00448.22 gi|385805740|ref|YP_005842138.1| - 0.085 12.5 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|385805740|ref|YP_005842138.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385805740|ref|YP_005842138.1| - 0.18 12.1 0.0 0.4 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|385805740|ref|YP_005842138.1| - 0.18 11.5 0.9 13 5.4 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase CarboxypepD_reg PF13620.6 gi|385805741|ref|YP_005842139.1| - 2.7e-06 27.5 20.9 8.6e-06 25.9 0.1 5.6 6 0 0 6 6 6 2 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|385805741|ref|YP_005842139.1| - 0.0083 16.1 0.0 3 7.9 0.0 3.2 3 0 0 3 3 3 1 Bacterial alpha-2-macroglobulin MG3 domain PEGA PF08308.11 gi|385805741|ref|YP_005842139.1| - 0.018 14.9 1.2 0.96 9.4 0.3 3.1 2 0 0 2 2 2 0 PEGA domain Cytochrom_D1 PF02239.16 gi|385805741|ref|YP_005842139.1| - 0.027 13.0 0.0 0.045 12.3 0.0 1.2 1 0 0 1 1 1 0 Cytochrome D1 heme domain Big_1 PF02369.16 gi|385805741|ref|YP_005842139.1| - 0.03 14.3 8.7 0.16 12.0 0.8 3.5 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|385805741|ref|YP_005842139.1| - 0.26 11.5 1.2 4.8 7.4 0.0 3.1 4 0 0 4 4 4 0 Macroglobulin domain MG4 UPF0242 PF06785.11 gi|385805742|ref|YP_005842140.1| - 0.0036 17.5 0.1 0.0056 16.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Matrilin_ccoil PF10393.9 gi|385805742|ref|YP_005842140.1| - 0.0059 16.4 0.1 0.014 15.3 0.1 1.6 1 0 0 1 1 1 1 Trimeric coiled-coil oligomerisation domain of matrilin BDV_M PF16520.5 gi|385805742|ref|YP_005842140.1| - 0.095 13.1 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 ssRNA-binding matrix protein of Bornaviridae CdvA PF18822.1 gi|385805742|ref|YP_005842140.1| - 0.1 12.5 1.0 4.8 7.0 0.1 2.3 2 0 0 2 2 2 0 CdvA-like coiled-coil domain PadR PF03551.14 gi|385805743|ref|YP_005842141.1| - 1.9e-15 56.6 0.5 3.4e-15 55.7 0.2 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|385805743|ref|YP_005842141.1| - 0.00011 20.7 1.5 0.00016 20.2 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_45 PF14947.6 gi|385805743|ref|YP_005842141.1| - 0.0016 18.3 0.9 0.006 16.5 0.9 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|385805743|ref|YP_005842141.1| - 0.0037 17.0 1.8 0.0037 17.0 1.8 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4364) RTP PF02334.16 gi|385805743|ref|YP_005842141.1| - 0.0073 16.9 3.5 0.029 15.0 1.5 2.2 1 1 1 2 2 2 1 Replication terminator protein Penicillinase_R PF03965.16 gi|385805743|ref|YP_005842141.1| - 0.029 14.7 0.1 0.25 11.7 0.1 2.4 1 1 0 1 1 1 0 Penicillinase repressor FUR PF01475.19 gi|385805743|ref|YP_005842141.1| - 0.069 13.3 0.5 0.49 10.5 0.0 2.4 1 1 2 3 3 3 0 Ferric uptake regulator family DUF3116 PF11313.8 gi|385805743|ref|YP_005842141.1| - 0.071 13.0 0.3 0.071 13.0 0.3 2.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3116) Nitro_FeMo-Co PF02579.17 gi|385805743|ref|YP_005842141.1| - 0.076 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor YbjQ_1 PF01906.17 gi|385805743|ref|YP_005842141.1| - 0.11 13.1 0.1 0.27 11.9 0.0 1.8 2 1 0 2 2 2 0 Putative heavy-metal-binding Replic_Relax PF13814.6 gi|385805743|ref|YP_005842141.1| - 0.15 12.1 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF5618 PF18498.1 gi|385805743|ref|YP_005842141.1| - 0.71 10.1 4.8 2.2 8.5 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5618) ABC_tran PF00005.27 gi|385805744|ref|YP_005842142.1| - 5.6e-29 101.4 0.0 1.3e-28 100.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter DUF4162 PF13732.6 gi|385805744|ref|YP_005842142.1| - 2.3e-14 53.9 0.4 4.8e-14 52.8 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|385805744|ref|YP_005842142.1| - 6.5e-12 45.9 0.9 2e-07 31.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|385805744|ref|YP_005842142.1| - 0.0007 19.4 1.7 0.24 11.1 0.0 2.9 2 1 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.6 gi|385805744|ref|YP_005842142.1| - 0.0052 16.5 0.2 0.0098 15.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|385805744|ref|YP_005842142.1| - 0.0073 16.8 2.1 0.024 15.1 0.3 2.3 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|385805744|ref|YP_005842142.1| - 0.01 16.2 1.0 0.24 11.8 1.0 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PepSY_2 PF13670.6 gi|385805744|ref|YP_005842142.1| - 0.011 15.7 0.1 0.45 10.6 0.0 2.4 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain SMC_N PF02463.19 gi|385805744|ref|YP_005842142.1| - 0.012 15.1 0.3 2.2 7.7 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|385805744|ref|YP_005842142.1| - 0.046 13.4 0.4 0.082 12.5 0.4 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|385805744|ref|YP_005842142.1| - 0.046 13.4 0.2 0.97 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|385805744|ref|YP_005842142.1| - 0.064 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|385805745|ref|YP_005842143.1| - 2.8e-31 108.6 22.3 2.1e-30 105.7 22.3 2.0 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|385805745|ref|YP_005842143.1| - 1.5e-16 60.5 26.8 1.5e-16 60.5 26.8 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|385805745|ref|YP_005842143.1| - 1.1e-09 38.0 22.1 1.6e-09 37.5 22.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|385805745|ref|YP_005842143.1| - 3.1 7.7 17.8 1.8 8.5 14.1 2.5 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|385805745|ref|YP_005842143.1| - 4.7 6.7 19.3 2.5 7.6 16.9 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein Deltameth_res PF16020.5 gi|385805745|ref|YP_005842143.1| - 7.4 6.5 7.7 13 5.7 0.1 3.3 3 0 0 3 3 3 0 Deltamethrin resistance Maf PF02545.14 gi|385805746|ref|YP_005842144.1| - 1.5e-48 164.8 0.1 1.7e-48 164.6 0.1 1.0 1 0 0 1 1 1 1 Maf-like protein DUF2070 PF09843.9 gi|385805748|ref|YP_005842146.1| - 1.3e-98 330.8 26.9 5.1e-97 325.5 0.3 2.0 1 1 1 2 2 2 2 Predicted membrane protein (DUF2070) adh_short_C2 PF13561.6 gi|385805749|ref|YP_005842147.1| - 1e-72 244.5 0.1 1.3e-72 244.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385805749|ref|YP_005842147.1| - 1e-56 191.5 0.3 1.3e-56 191.2 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385805749|ref|YP_005842147.1| - 3.1e-11 43.5 0.0 5.3e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 KR domain 3Beta_HSD PF01073.19 gi|385805749|ref|YP_005842147.1| - 0.0018 17.3 0.1 0.0026 16.8 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|385805749|ref|YP_005842147.1| - 0.0026 17.3 0.0 0.0036 16.8 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 gi|385805749|ref|YP_005842147.1| - 0.055 13.7 0.1 0.12 12.7 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Sugar_tr PF00083.24 gi|385805750|ref|YP_005842148.1| - 3e-27 95.6 16.8 5.1e-27 94.8 16.8 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|385805750|ref|YP_005842148.1| - 7.1e-21 74.5 34.2 4.2e-13 48.9 12.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily VIT1 PF01988.19 gi|385805750|ref|YP_005842148.1| - 1.8 8.4 14.8 0.99 9.2 4.1 2.5 2 0 0 2 2 2 0 VIT family AAA_26 PF13500.6 gi|385805751|ref|YP_005842149.1| - 0.0014 18.5 0.0 0.0075 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain Glutaredoxin2_C PF04399.13 gi|385805751|ref|YP_005842149.1| - 0.043 13.7 0.0 0.73 9.7 0.0 2.2 2 0 0 2 2 2 0 Glutaredoxin 2, C terminal domain DUF5449 PF17528.2 gi|385805751|ref|YP_005842149.1| - 0.087 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5449) Radical_SAM PF04055.21 gi|385805752|ref|YP_005842150.1| - 3.4e-12 47.0 0.0 5.8e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|385805752|ref|YP_005842150.1| - 3.7e-09 36.7 2.4 0.00075 19.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1848) Peptidase_M50 PF02163.22 gi|385805753|ref|YP_005842151.1| - 9.6e-05 21.8 5.5 0.00046 19.5 1.1 2.0 1 1 1 2 2 2 2 Peptidase family M50 Proteasome PF00227.26 gi|385805754|ref|YP_005842152.1| - 6.7e-62 208.4 0.0 9.2e-62 207.9 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|385805754|ref|YP_005842152.1| - 8.3e-14 51.0 1.4 3.3e-13 49.0 0.5 2.4 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature Desulfoferrodox PF01880.18 gi|385805755|ref|YP_005842153.1| - 1.4e-27 96.1 0.1 1.7e-27 95.9 0.1 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.6 gi|385805755|ref|YP_005842153.1| - 2.2e-09 37.5 0.0 2.6e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY NUDIX PF00293.28 gi|385805756|ref|YP_005842154.1| - 3e-20 72.6 0.1 4.3e-20 72.1 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain Kri1 PF05178.12 gi|385805756|ref|YP_005842154.1| - 0.47 11.0 3.1 0.67 10.5 1.7 1.9 2 0 0 2 2 2 0 KRI1-like family COXG PF06240.13 gi|385805757|ref|YP_005842155.1| - 1.2e-23 83.4 0.1 1.4e-23 83.2 0.1 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|385805757|ref|YP_005842155.1| - 2.4e-05 24.6 0.0 2.8e-05 24.4 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport RFX5_N PF18326.1 gi|385805757|ref|YP_005842155.1| - 0.065 13.0 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 RFX5 N-terminal domain DUF2505 PF10698.9 gi|385805757|ref|YP_005842155.1| - 0.13 12.4 0.0 0.25 11.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) DUF711 PF05167.12 gi|385805758|ref|YP_005842156.1| - 1.8e-26 93.0 0.0 3e-22 79.1 0.0 2.4 1 1 1 2 2 2 2 Uncharacterised ACR (DUF711) Hydrolase PF00702.26 gi|385805759|ref|YP_005842157.1| - 2e-12 47.9 0.0 7.2e-11 42.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|385805759|ref|YP_005842157.1| - 1.8e-06 28.5 0.0 2.2e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|385805759|ref|YP_005842157.1| - 0.0006 19.6 0.0 0.018 14.8 0.0 2.7 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|385805759|ref|YP_005842157.1| - 0.00076 19.0 0.0 0.002 17.6 0.0 1.6 2 0 0 2 2 2 1 Putative Phosphatase HAD_2 PF13419.6 gi|385805759|ref|YP_005842157.1| - 0.018 15.2 0.1 0.19 11.8 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HTH_19 PF12844.7 gi|385805759|ref|YP_005842157.1| - 0.056 13.5 0.4 0.29 11.2 0.5 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain S6PP PF05116.13 gi|385805759|ref|YP_005842157.1| - 0.072 12.6 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|385805759|ref|YP_005842157.1| - 0.081 13.0 0.0 11 6.2 0.0 2.8 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase DUF4010 PF13194.6 gi|385805760|ref|YP_005842158.1| - 7.5e-30 104.2 20.5 7.5e-30 104.2 20.5 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|385805760|ref|YP_005842158.1| - 9.4e-18 64.7 4.6 9.4e-18 64.7 4.6 3.5 2 1 1 3 3 3 1 MgtC family Lig_chan PF00060.26 gi|385805760|ref|YP_005842158.1| - 2.4 8.0 4.7 2.5 8.0 0.2 2.9 2 1 0 3 3 3 0 Ligand-gated ion channel Alba PF01918.21 gi|385805761|ref|YP_005842159.1| - 8.6e-10 38.3 1.6 1.2e-09 37.9 1.6 1.1 1 0 0 1 1 1 1 Alba Topoisom_bac PF01131.20 gi|385805762|ref|YP_005842160.1| - 5.7e-81 272.6 0.1 1e-80 271.8 0.1 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|385805762|ref|YP_005842160.1| - 5.1e-22 78.1 0.0 2.1e-21 76.0 0.0 2.2 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|385805762|ref|YP_005842160.1| - 2.1e-15 57.0 0.5 1.1e-14 54.5 0.2 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|385805762|ref|YP_005842160.1| - 4.6e-15 54.8 0.8 4.6e-15 54.8 0.8 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|385805762|ref|YP_005842160.1| - 3.5e-10 40.1 0.4 2e-09 37.7 0.2 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|385805762|ref|YP_005842160.1| - 3e-08 34.0 0.4 4.4e-05 23.8 0.2 3.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ATPase PF06745.13 gi|385805762|ref|YP_005842160.1| - 3.3e-05 23.4 0.4 0.001 18.5 0.1 2.7 2 0 0 2 2 2 1 KaiC AAA_22 PF13401.6 gi|385805762|ref|YP_005842160.1| - 4.1e-05 23.9 0.2 0.0002 21.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|385805762|ref|YP_005842160.1| - 0.00039 20.1 0.0 0.00083 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|385805762|ref|YP_005842160.1| - 0.00052 18.8 0.0 0.00095 18.0 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_30 PF13604.6 gi|385805762|ref|YP_005842160.1| - 0.014 15.1 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Helicase_RecD PF05127.14 gi|385805762|ref|YP_005842160.1| - 0.017 15.0 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 Helicase AAA_19 PF13245.6 gi|385805762|ref|YP_005842160.1| - 0.021 15.2 0.0 0.048 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Toprim_4 PF13662.6 gi|385805762|ref|YP_005842160.1| - 0.063 13.7 0.0 0.44 11.0 0.0 2.5 1 0 0 1 1 1 0 Toprim domain cobW PF02492.19 gi|385805762|ref|YP_005842160.1| - 0.076 12.6 0.4 0.34 10.5 0.2 2.2 2 1 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|385805762|ref|YP_005842160.1| - 0.093 12.4 0.1 0.32 10.6 0.1 1.9 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain zf-C2HC_2 PF13913.6 gi|385805762|ref|YP_005842160.1| - 0.097 12.6 5.1 1.8 8.5 0.7 2.9 2 0 0 2 2 2 0 zinc-finger of a C2HC-type PhoH PF02562.16 gi|385805762|ref|YP_005842160.1| - 0.1 12.0 0.3 3.4 7.1 0.1 2.8 2 1 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|385805762|ref|YP_005842160.1| - 0.12 12.1 0.2 0.47 10.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain SecA_DEAD PF07517.14 gi|385805762|ref|YP_005842160.1| - 0.16 11.2 0.5 0.31 10.3 0.4 1.5 1 1 0 1 1 1 0 SecA DEAD-like domain zf-C2H2 PF00096.26 gi|385805762|ref|YP_005842160.1| - 0.2 12.2 3.2 1.3 9.6 0.3 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|385805762|ref|YP_005842160.1| - 0.29 12.1 6.5 0.37 11.7 0.1 3.0 2 1 1 3 3 2 0 C2H2-type zinc finger DZR PF12773.7 gi|385805762|ref|YP_005842160.1| - 0.65 10.1 4.3 0.48 10.5 0.3 2.2 2 0 0 2 2 2 0 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|385805762|ref|YP_005842160.1| - 0.78 9.7 2.9 2.1 8.3 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.6 gi|385805762|ref|YP_005842160.1| - 3.5 7.2 5.4 1.3 8.5 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|385805762|ref|YP_005842160.1| - 8.2 6.4 7.6 0.38 10.7 1.5 1.9 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) E1-E2_ATPase PF00122.20 gi|385805763|ref|YP_005842161.1| - 4.5e-48 163.2 6.8 4.5e-48 163.2 6.8 3.6 5 1 0 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|385805763|ref|YP_005842161.1| - 1.1e-26 94.4 0.6 2e-26 93.6 0.6 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|385805763|ref|YP_005842161.1| - 7.4e-17 60.8 0.0 2.1e-16 59.4 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|385805763|ref|YP_005842161.1| - 1.5e-06 28.2 0.9 4.7e-06 26.5 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|385805763|ref|YP_005842161.1| - 7.1e-06 26.0 0.0 1.9e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Cation transport ATPase (P-type) ETRAMP PF09716.10 gi|385805763|ref|YP_005842161.1| - 7.3 6.7 16.0 0.68 10.0 0.4 4.2 4 0 0 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) Ubie_methyltran PF01209.18 gi|385805764|ref|YP_005842162.1| - 3.6e-17 62.5 0.1 4.6e-17 62.1 0.1 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|385805764|ref|YP_005842162.1| - 7.6e-13 49.0 0.0 1.3e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385805764|ref|YP_005842162.1| - 4.5e-12 46.5 0.0 8.5e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805764|ref|YP_005842162.1| - 6.6e-10 39.0 0.0 1.4e-09 37.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805764|ref|YP_005842162.1| - 3.9e-06 26.8 0.0 5.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385805764|ref|YP_005842162.1| - 0.00045 20.9 0.0 0.00088 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain tRNA-synt_1e PF01406.19 gi|385805765|ref|YP_005842163.1| - 3.9e-129 430.3 0.5 3.9e-129 430.3 0.5 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|385805765|ref|YP_005842163.1| - 1e-16 60.7 2.5 2.6e-09 36.3 1.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|385805765|ref|YP_005842163.1| - 1.1e-09 37.2 0.2 1.4e-07 30.2 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|385805765|ref|YP_005842163.1| - 7.7e-08 31.6 0.1 3.5e-06 26.2 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|385805765|ref|YP_005842163.1| - 0.0021 17.1 2.8 0.044 12.7 0.1 3.2 2 2 1 3 3 3 1 tRNA synthetases class I (R) CBM46 PF18448.1 gi|385805765|ref|YP_005842163.1| - 0.052 13.9 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 Carbohydrate binding domain DALR_2 PF09190.11 gi|385805765|ref|YP_005842163.1| - 0.069 13.6 0.0 0.19 12.2 0.0 1.8 1 0 0 1 1 1 0 DALR domain Alba PF01918.21 gi|385805767|ref|YP_005842165.1| - 8.8e-17 60.7 1.3 1.2e-16 60.3 1.3 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|385805767|ref|YP_005842165.1| - 0.013 15.5 1.3 0.018 15.0 0.9 1.5 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Na_Ca_ex PF01699.24 gi|385805768|ref|YP_005842166.1| - 5.9e-11 42.5 29.7 5.7e-08 32.8 8.6 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ELFV_dehydrog PF00208.21 gi|385805769|ref|YP_005842167.1| - 8e-64 215.7 0.0 1e-63 215.3 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|385805769|ref|YP_005842167.1| - 8.7e-52 174.4 0.0 1.3e-51 173.9 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|385805769|ref|YP_005842167.1| - 0.00054 19.4 0.0 0.00093 18.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|385805769|ref|YP_005842167.1| - 0.041 14.3 0.0 0.074 13.5 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|385805769|ref|YP_005842167.1| - 0.23 11.5 1.4 0.37 10.8 0.3 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SfLAP PF11139.8 gi|385805770|ref|YP_005842168.1| - 1.2e-05 24.9 7.2 1.2e-05 24.9 7.2 2.3 2 1 1 3 3 3 2 Sap, sulfolipid-1-addressing protein DsbD PF02683.15 gi|385805770|ref|YP_005842168.1| - 0.00025 21.0 18.4 0.00026 20.9 16.9 1.8 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region dCache_1 PF02743.18 gi|385805770|ref|YP_005842168.1| - 0.0032 17.3 0.1 0.0049 16.7 0.1 1.2 1 0 0 1 1 1 1 Cache domain Methyltransf_11 PF08241.12 gi|385805771|ref|YP_005842169.1| - 9.2e-05 23.0 0.0 0.00017 22.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385805771|ref|YP_005842169.1| - 0.0014 19.3 0.2 0.01 16.5 0.1 2.2 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|385805771|ref|YP_005842169.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|385805771|ref|YP_005842169.1| - 0.022 14.6 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385805771|ref|YP_005842169.1| - 0.025 14.4 0.2 0.076 12.8 0.2 1.7 2 0 0 2 2 2 0 Methyltransferase domain Glutaredoxin PF00462.24 gi|385805772|ref|YP_005842170.1| - 8.1e-06 26.0 0.2 1.5e-05 25.1 0.1 1.5 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.6 gi|385805772|ref|YP_005842170.1| - 0.0039 17.6 0.0 0.0053 17.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain YtxH PF12732.7 gi|385805773|ref|YP_005842171.1| - 0.084 13.4 1.6 0.11 13.0 1.6 1.4 1 1 0 1 1 1 0 YtxH-like protein NAD_synthase PF02540.17 gi|385805774|ref|YP_005842172.1| - 6.9e-78 261.1 0.0 9e-78 260.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|385805774|ref|YP_005842172.1| - 1.8e-07 30.3 0.0 9.4e-05 21.4 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|385805774|ref|YP_005842172.1| - 0.0013 18.3 0.0 0.0072 15.8 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|385805774|ref|YP_005842172.1| - 0.014 15.2 0.1 0.031 14.0 0.1 1.7 1 1 0 1 1 1 0 PP-loop family A_thal_3526 PF09713.10 gi|385805774|ref|YP_005842172.1| - 0.062 13.6 0.5 1.4 9.2 0.5 2.3 2 0 0 2 2 2 0 Plant protein 1589 of unknown function (A_thal_3526) ThiI PF02568.14 gi|385805774|ref|YP_005842172.1| - 0.098 12.2 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) TatD_DNase PF01026.21 gi|385805775|ref|YP_005842173.1| - 4.4e-19 68.8 0.0 5.4e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Succ_CoA_lig PF13607.6 gi|385805776|ref|YP_005842174.1| - 4.4e-51 172.3 0.2 1.1e-50 171.1 0.2 1.7 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|385805776|ref|YP_005842174.1| - 1.6e-24 86.7 0.5 1.9e-23 83.1 0.3 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|385805776|ref|YP_005842174.1| - 1.1e-13 51.6 1.6 7.9e-13 48.9 0.7 2.5 2 0 0 2 2 2 1 CoA binding domain Peptidase_M24 PF00557.24 gi|385805777|ref|YP_005842175.1| - 3.9e-51 173.7 0.0 5.4e-51 173.3 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|385805777|ref|YP_005842175.1| - 1.7e-08 35.1 0.0 4.1e-08 33.9 0.0 1.6 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Effector_1 PF04518.12 gi|385805777|ref|YP_005842175.1| - 0.065 12.3 0.6 1.3 8.1 0.4 2.2 1 1 1 2 2 2 0 Effector from type III secretion system TBPIP PF07106.13 gi|385805778|ref|YP_005842176.1| - 0.0063 16.4 0.0 0.091 12.7 0.0 2.2 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain DUF3333 PF11812.8 gi|385805778|ref|YP_005842176.1| - 0.027 14.7 0.0 0.035 14.3 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3333) TFIIE_beta PF02186.15 gi|385805778|ref|YP_005842176.1| - 0.098 13.0 0.1 0.44 10.9 0.0 2.0 1 1 1 2 2 2 0 TFIIE beta subunit core domain Ribosomal_S25 PF03297.15 gi|385805779|ref|YP_005842177.1| - 3.3e-14 52.9 0.3 3.7e-14 52.7 0.3 1.0 1 0 0 1 1 1 1 S25 ribosomal protein Fe_dep_repress PF01325.19 gi|385805779|ref|YP_005842177.1| - 0.02 15.1 1.0 0.025 14.8 0.3 1.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|385805779|ref|YP_005842177.1| - 0.03 14.7 0.2 0.042 14.2 0.1 1.3 1 1 0 1 1 1 0 Penicillinase repressor Metallophos_3 PF14582.6 gi|385805780|ref|YP_005842178.1| - 3.2e-16 59.4 2.9 2.8e-13 49.8 0.9 3.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|385805780|ref|YP_005842178.1| - 1.3e-15 58.0 0.6 2.6e-15 57.0 0.6 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385805780|ref|YP_005842178.1| - 4.8e-11 43.6 0.5 7.5e-11 42.9 0.5 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Ost5 PF05251.12 gi|385805782|ref|YP_005842180.1| - 0.00091 19.4 0.5 0.0015 18.8 0.5 1.3 1 0 0 1 1 1 1 Oligosaccharyltransferase subunit 5 STELLO PF03385.17 gi|385805782|ref|YP_005842180.1| - 0.0091 14.9 0.1 0.01 14.7 0.1 1.1 1 0 0 1 1 1 1 STELLO glycosyltransferases DUF4330 PF14221.6 gi|385805782|ref|YP_005842180.1| - 0.046 13.9 0.2 0.055 13.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF1512 PF07431.12 gi|385805783|ref|YP_005842181.1| - 6.9e-139 462.8 8.5 7.8e-139 462.6 8.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Drf_DAD PF06345.11 gi|385805784|ref|YP_005842182.1| - 0.046 13.8 0.3 3.2 8.0 0.1 2.4 2 0 0 2 2 2 0 DRF Autoregulatory Domain ABC_tran PF00005.27 gi|385805785|ref|YP_005842183.1| - 3.5e-36 124.7 0.0 6.7e-36 123.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385805785|ref|YP_005842183.1| - 7.1e-08 32.6 0.1 0.0004 20.3 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|385805785|ref|YP_005842183.1| - 1.3e-05 25.3 0.0 0.00073 19.6 0.0 3.2 3 1 1 4 4 4 1 TOBE domain SMC_N PF02463.19 gi|385805785|ref|YP_005842183.1| - 8.2e-05 22.1 0.2 0.002 17.6 0.1 2.4 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|385805785|ref|YP_005842183.1| - 0.0081 16.6 0.3 0.12 12.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|385805785|ref|YP_005842183.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|385805785|ref|YP_005842183.1| - 0.016 15.5 2.2 0.14 12.4 2.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|385805785|ref|YP_005842183.1| - 0.025 15.0 0.0 0.04 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain OB_MalK PF17912.1 gi|385805785|ref|YP_005842183.1| - 0.042 14.7 0.1 0.5 11.2 0.0 2.7 2 0 0 2 2 2 0 MalK OB fold domain TniB PF05621.11 gi|385805785|ref|YP_005842183.1| - 0.042 13.3 1.1 0.28 10.6 0.7 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_25 PF13481.6 gi|385805785|ref|YP_005842183.1| - 0.05 13.2 0.0 0.22 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|385805785|ref|YP_005842183.1| - 0.087 13.2 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase SbcCD_C PF13558.6 gi|385805785|ref|YP_005842183.1| - 0.18 12.1 0.1 1.5 9.1 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|385805785|ref|YP_005842183.1| - 3.2 8.2 5.6 15 6.0 5.5 2.2 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|385805786|ref|YP_005842184.1| - 5.2e-26 91.5 41.3 2.2e-15 56.9 15.4 4.2 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component YebO PF13974.6 gi|385805786|ref|YP_005842184.1| - 2.6 8.2 5.8 6.4 6.9 1.6 2.7 2 0 0 2 2 2 0 YebO-like protein SBP_bac_6 PF13343.6 gi|385805787|ref|YP_005842185.1| - 4.8e-17 62.2 0.7 7.4e-17 61.6 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|385805787|ref|YP_005842185.1| - 5.9e-15 55.8 4.6 5.9e-15 55.8 4.6 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|385805787|ref|YP_005842185.1| - 5.1e-14 53.0 3.8 9e-14 52.1 3.8 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|385805787|ref|YP_005842185.1| - 0.0018 18.1 0.8 0.0052 16.6 0.2 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein NCE101 PF11654.8 gi|385805787|ref|YP_005842185.1| - 0.012 15.3 0.1 0.029 14.1 0.1 1.5 1 0 0 1 1 1 0 Non-classical export protein 1 DUF4330 PF14221.6 gi|385805787|ref|YP_005842185.1| - 0.024 14.9 0.2 0.044 14.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF4307 PF14155.6 gi|385805787|ref|YP_005842185.1| - 0.15 11.9 1.3 0.38 10.6 1.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Flavoprotein PF02441.19 gi|385805788|ref|YP_005842186.1| - 3.7e-26 91.8 1.0 7.1e-26 90.8 1.0 1.4 1 1 0 1 1 1 1 Flavoprotein ERCC3_RAD25_C PF16203.5 gi|385805791|ref|YP_005842189.1| - 1.9e-25 89.5 0.0 3.4e-25 88.7 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|385805791|ref|YP_005842189.1| - 2.7e-21 76.3 0.7 8.6e-21 74.7 0.1 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|385805791|ref|YP_005842189.1| - 4.3e-17 62.5 0.0 1.7e-16 60.6 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|385805791|ref|YP_005842189.1| - 3.2e-07 30.3 0.2 1.3e-06 28.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|385805791|ref|YP_005842189.1| - 0.00071 19.9 0.0 0.0098 16.2 0.0 2.7 2 1 1 3 3 3 1 AAA domain DNA_pol3_chi PF04364.13 gi|385805791|ref|YP_005842189.1| - 0.037 14.2 0.2 0.92 9.7 0.1 2.8 3 0 0 3 3 3 0 DNA polymerase III chi subunit, HolC DAPDH_C PF16654.5 gi|385805791|ref|YP_005842189.1| - 0.095 12.5 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain SinI PF08671.10 gi|385805791|ref|YP_005842189.1| - 0.15 11.9 0.9 9.6 6.1 0.0 3.3 3 0 0 3 3 3 0 Anti-repressor SinI ParA PF10609.9 gi|385805792|ref|YP_005842190.1| - 2.1e-72 243.5 0.0 2.5e-72 243.3 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|385805792|ref|YP_005842190.1| - 1.8e-07 31.3 0.0 2.6e-07 30.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|385805792|ref|YP_005842190.1| - 2.5e-06 26.9 4.8 0.0019 17.5 1.6 2.5 2 1 0 2 2 2 2 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|385805792|ref|YP_005842190.1| - 0.0012 18.4 1.2 0.17 11.3 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|385805792|ref|YP_005842190.1| - 0.0038 17.2 1.7 0.057 13.3 1.7 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|385805792|ref|YP_005842190.1| - 0.0048 16.2 0.0 0.0097 15.2 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|385805792|ref|YP_005842190.1| - 0.03 13.3 0.4 4.3 6.2 0.1 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|385805792|ref|YP_005842190.1| - 0.045 13.6 1.1 0.18 11.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|385805792|ref|YP_005842190.1| - 0.086 12.4 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain TP6A_N PF04406.14 gi|385805793|ref|YP_005842191.1| - 4.7e-21 74.6 0.1 7.9e-21 73.8 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF313 PF03754.13 gi|385805793|ref|YP_005842191.1| - 0.015 15.5 2.6 0.063 13.5 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF313) PhdYeFM_antitox PF02604.19 gi|385805793|ref|YP_005842191.1| - 0.04 13.7 0.2 0.14 12.0 0.2 1.9 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system DUF2399 PF09664.10 gi|385805793|ref|YP_005842191.1| - 0.045 13.7 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) MRP-63 PF14978.6 gi|385805793|ref|YP_005842191.1| - 0.13 12.9 2.9 2.5 8.8 1.8 2.9 2 0 0 2 2 2 0 Mitochondrial ribosome protein 63 Topo-VIb_trans PF09239.11 gi|385805794|ref|YP_005842192.1| - 2e-61 206.5 0.1 2e-61 206.5 0.1 1.6 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|385805794|ref|YP_005842192.1| - 1.1e-10 42.0 0.0 3.7e-10 40.3 0.0 1.8 1 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|385805794|ref|YP_005842192.1| - 6.3e-10 39.0 0.0 1.4e-09 37.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|385805794|ref|YP_005842192.1| - 4.8e-08 32.2 4.9 8.1e-08 31.4 0.0 2.2 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.14 gi|385805794|ref|YP_005842192.1| - 0.00076 19.4 0.2 0.0033 17.4 0.0 2.1 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.22 gi|385805794|ref|YP_005842192.1| - 0.0032 17.8 0.1 0.027 14.8 0.0 2.6 3 0 0 3 3 3 1 Ribosomal protein S13/S18 DcpS_C PF11969.8 gi|385805794|ref|YP_005842192.1| - 0.084 13.4 0.1 0.24 11.9 0.1 1.8 1 0 0 1 1 1 0 Scavenger mRNA decapping enzyme C-term binding CENP-K PF11802.8 gi|385805794|ref|YP_005842192.1| - 1.5 8.4 8.2 14 5.2 4.6 2.5 2 1 0 2 2 2 0 Centromere-associated protein K DS PF01916.17 gi|385805795|ref|YP_005842193.1| - 6.9e-93 311.0 0.0 7.8e-93 310.9 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase RtcB PF01139.17 gi|385805796|ref|YP_005842194.1| - 2.3e-160 534.3 0.0 2.7e-160 534.1 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Intein_splicing PF14890.6 gi|385805796|ref|YP_005842194.1| - 1.7e-18 66.8 0.0 9.6e-18 64.4 0.0 2.5 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|385805796|ref|YP_005842194.1| - 1.9e-06 28.1 2.7 0.06 13.7 0.6 3.1 2 1 0 2 2 2 2 LAGLIDADG-like domain PT-HINT PF07591.11 gi|385805796|ref|YP_005842194.1| - 0.00049 20.3 0.4 0.012 15.8 0.0 2.7 2 0 0 2 2 2 1 Pretoxin HINT domain Hint PF01079.20 gi|385805796|ref|YP_005842194.1| - 0.0068 15.9 0.0 0.032 13.7 0.0 1.9 2 0 0 2 2 2 1 Hint module Hom_end_hint PF05203.16 gi|385805796|ref|YP_005842194.1| - 0.037 14.0 0.0 0.084 12.8 0.0 1.6 1 0 0 1 1 1 0 Hom_end-associated Hint DUF5449 PF17528.2 gi|385805796|ref|YP_005842194.1| - 0.087 12.6 0.6 0.21 11.3 0.3 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5449) Rad51 PF08423.11 gi|385805797|ref|YP_005842195.1| - 4.8e-85 284.9 2.0 3e-70 236.4 0.0 2.1 2 0 0 2 2 2 2 Rad51 Intein_splicing PF14890.6 gi|385805797|ref|YP_005842195.1| - 2.7e-17 63.0 4.4 2.9e-17 62.9 0.8 2.7 3 1 0 3 3 3 1 Intein splicing domain HHH_5 PF14520.6 gi|385805797|ref|YP_005842195.1| - 2.6e-13 50.4 0.5 8.3e-13 48.7 0.5 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|385805797|ref|YP_005842195.1| - 6.7e-11 42.2 0.4 3.5e-07 30.0 0.1 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein ATPase PF06745.13 gi|385805797|ref|YP_005842195.1| - 1.4e-07 31.1 1.3 0.00097 18.5 0.0 2.4 2 0 0 2 2 2 2 KaiC Cdd1 PF11731.8 gi|385805797|ref|YP_005842195.1| - 2.1e-05 24.6 0.0 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 1 Pathogenicity locus AAA_25 PF13481.6 gi|385805797|ref|YP_005842195.1| - 0.00027 20.6 0.3 0.00073 19.2 0.1 1.7 2 0 0 2 2 2 1 AAA domain DNA_pol_lambd_f PF10391.9 gi|385805797|ref|YP_005842195.1| - 0.00091 19.0 0.0 0.0047 16.7 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|385805797|ref|YP_005842195.1| - 0.0018 18.0 0.2 0.0081 16.0 0.1 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|385805797|ref|YP_005842195.1| - 0.0045 17.6 0.6 0.017 15.7 0.1 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DUF296 PF03479.15 gi|385805797|ref|YP_005842195.1| - 0.0057 17.0 0.1 0.26 11.7 0.0 2.7 2 0 0 2 2 2 1 Plants and Prokaryotes Conserved (PCC) domain HHH_2 PF12826.7 gi|385805797|ref|YP_005842195.1| - 0.023 14.8 0.1 0.088 12.9 0.1 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|385805797|ref|YP_005842195.1| - 0.027 14.8 0.0 0.095 13.1 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif HTH_23 PF13384.6 gi|385805797|ref|YP_005842195.1| - 0.036 13.9 0.1 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HHH_8 PF14716.6 gi|385805797|ref|YP_005842195.1| - 0.047 14.1 0.1 0.14 12.5 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|385805797|ref|YP_005842195.1| - 0.064 13.5 0.6 13 6.2 0.0 3.2 3 0 0 3 3 3 0 Helix-hairpin-helix motif TENA_THI-4 PF03070.16 gi|385805798|ref|YP_005842196.1| - 1.6e-34 119.5 1.5 1.8e-34 119.4 1.5 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family RhoGEF PF00621.20 gi|385805798|ref|YP_005842196.1| - 0.041 14.1 0.7 0.041 14.1 0.7 1.8 2 0 0 2 2 2 0 RhoGEF domain LRR19-TM PF15176.6 gi|385805799|ref|YP_005842197.1| - 0.042 13.9 0.5 0.042 13.9 0.5 1.2 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain EamA PF00892.20 gi|385805800|ref|YP_005842198.1| - 2.1e-22 79.7 39.2 6.8e-19 68.4 14.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 gi|385805800|ref|YP_005842198.1| - 1 9.3 0.0 1 9.3 0.0 3.7 2 1 2 4 4 4 0 Positive regulator of sigma(E), RseC/MucC CTP_transf_like PF01467.26 gi|385805801|ref|YP_005842199.1| - 1.6e-15 57.5 0.0 2.2e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like SAM_adeno_trans PF01887.16 gi|385805802|ref|YP_005842200.1| - 8.3e-69 231.6 0.0 9.3e-69 231.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF1947 PF09183.10 gi|385805802|ref|YP_005842200.1| - 0.09 13.1 0.3 0.27 11.6 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) tRNA-Thr_ED PF08915.11 gi|385805804|ref|YP_005842202.1| - 5e-49 165.9 0.6 9.5e-49 165.0 0.6 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|385805804|ref|YP_005842202.1| - 1.8e-14 53.6 0.3 5.3e-14 52.1 0.3 1.8 1 0 0 1 1 1 1 Anticodon binding domain Glutaredoxin PF00462.24 gi|385805804|ref|YP_005842202.1| - 0.071 13.3 0.0 0.24 11.7 0.0 1.9 1 0 0 1 1 1 0 Glutaredoxin NosD PF05048.13 gi|385805804|ref|YP_005842202.1| - 0.094 12.0 0.6 0.16 11.2 0.6 1.4 1 0 0 1 1 1 0 Periplasmic copper-binding protein (NosD) UbiA PF01040.18 gi|385805805|ref|YP_005842203.1| - 1.5e-34 119.4 15.2 1.9e-34 119.1 15.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family UPF0051 PF01458.17 gi|385805806|ref|YP_005842204.1| - 9.7e-27 94.1 0.3 1.3e-26 93.6 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|385805807|ref|YP_005842205.1| - 1e-64 218.2 1.4 1.4e-64 217.8 1.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|385805808|ref|YP_005842206.1| - 8.9e-22 78.1 0.0 1.3e-21 77.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|385805808|ref|YP_005842206.1| - 6e-08 32.4 0.3 6.1e-06 25.8 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385805808|ref|YP_005842206.1| - 6.3e-08 32.8 1.6 0.00017 21.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|385805808|ref|YP_005842206.1| - 1.7e-05 23.8 0.0 0.059 12.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|385805808|ref|YP_005842206.1| - 0.0016 18.3 0.1 0.0033 17.4 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|385805808|ref|YP_005842206.1| - 0.0021 18.5 0.3 0.035 14.5 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385805808|ref|YP_005842206.1| - 0.0097 16.3 0.0 0.015 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|385805808|ref|YP_005842206.1| - 0.011 16.3 0.3 0.026 15.0 0.3 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385805808|ref|YP_005842206.1| - 0.017 15.4 0.1 0.48 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|385805808|ref|YP_005842206.1| - 0.023 14.9 0.0 0.058 13.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|385805808|ref|YP_005842206.1| - 0.035 13.9 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|385805808|ref|YP_005842206.1| - 0.05 12.8 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|385805808|ref|YP_005842206.1| - 0.07 13.0 0.7 0.073 13.0 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|385805808|ref|YP_005842206.1| - 0.14 11.9 0.1 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|385805808|ref|YP_005842206.1| - 0.15 12.0 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Prok-RING_4 PF14447.6 gi|385805809|ref|YP_005842207.1| - 0.00019 21.2 25.6 0.13 12.1 8.9 3.2 1 1 2 3 3 3 2 Prokaryotic RING finger family 4 zf-B_box PF00643.24 gi|385805809|ref|YP_005842207.1| - 0.00042 20.4 33.3 0.007 16.5 8.7 3.5 1 1 2 3 3 3 2 B-box zinc finger FYVE PF01363.21 gi|385805809|ref|YP_005842207.1| - 0.00096 19.2 36.2 0.0059 16.7 10.6 3.7 1 1 1 2 2 2 1 FYVE zinc finger DUF753 PF05444.12 gi|385805809|ref|YP_005842207.1| - 0.0057 16.6 21.2 0.0077 16.2 21.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF753) Prok-RING_2 PF14445.6 gi|385805809|ref|YP_005842207.1| - 2.7 8.2 25.9 1.1 9.5 9.5 2.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 Fer2_4 PF13510.6 gi|385805809|ref|YP_005842207.1| - 5.9 7.0 15.9 1.5 9.0 7.5 2.3 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DeoC PF01791.9 gi|385805810|ref|YP_005842208.1| - 1.2e-06 28.3 0.0 1.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 DeoC/LacD family aldolase FMN_dh PF01070.18 gi|385805810|ref|YP_005842208.1| - 0.036 13.1 0.3 0.061 12.3 0.3 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase CbiA PF01656.23 gi|385805810|ref|YP_005842208.1| - 0.096 12.7 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain zf-C2H2 PF00096.26 gi|385805811|ref|YP_005842209.1| - 0.00086 19.6 0.1 0.0014 19.0 0.1 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type HGTP_anticodon PF03129.20 gi|385805813|ref|YP_005842211.1| - 8.7e-24 83.5 0.1 2.5e-23 82.0 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|385805813|ref|YP_005842211.1| - 3.7e-08 33.5 0.1 1.6e-07 31.5 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-RING_7 PF02591.15 gi|385805813|ref|YP_005842211.1| - 0.0031 17.6 0.4 2.2 8.5 0.1 2.5 2 0 0 2 2 2 2 C4-type zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385805813|ref|YP_005842211.1| - 0.18 11.3 0.0 0.49 9.9 0.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Molydop_binding PF01568.21 gi|385805814|ref|YP_005842212.1| - 2e-05 24.5 0.0 2.9e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain DUF685 PF05085.12 gi|385805815|ref|YP_005842213.1| - 0.0046 16.3 0.1 0.006 15.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF685) UvrD-helicase PF00580.21 gi|385805815|ref|YP_005842213.1| - 0.017 14.7 2.3 0.018 14.5 2.3 1.1 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Phage_min_cap2 PF06152.11 gi|385805815|ref|YP_005842213.1| - 0.54 9.1 5.8 0.83 8.5 2.5 1.9 1 1 1 2 2 2 0 Phage minor capsid protein 2 Vpu PF00558.19 gi|385805815|ref|YP_005842213.1| - 8.6 6.2 9.9 18 5.1 0.3 2.3 2 1 0 2 2 2 0 Vpu protein PhoU_div PF01865.16 gi|385805816|ref|YP_005842214.1| - 1.3e-06 28.0 7.6 1.6e-06 27.6 7.6 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|385805816|ref|YP_005842214.1| - 0.3 11.6 12.7 0.43 11.1 2.4 3.3 2 2 1 3 3 3 0 PhoU domain tRNA_int_endo PF01974.17 gi|385805817|ref|YP_005842215.1| - 8.9e-28 96.2 0.1 1.5e-27 95.5 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|385805817|ref|YP_005842215.1| - 1.1e-13 50.7 2.2 1.1e-13 50.6 0.8 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|385805817|ref|YP_005842215.1| - 0.0026 17.9 0.1 0.0051 17.0 0.1 1.5 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term cNMP_binding PF00027.29 gi|385805817|ref|YP_005842215.1| - 0.055 13.6 0.1 0.13 12.3 0.0 1.6 2 0 0 2 2 2 0 Cyclic nucleotide-binding domain ThiF PF00899.21 gi|385805819|ref|YP_005842217.1| - 9.9e-64 215.0 0.0 1.2e-63 214.7 0.0 1.0 1 0 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.6 gi|385805819|ref|YP_005842217.1| - 5.2e-05 23.6 1.2 0.0067 16.8 1.0 3.0 2 1 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|385805819|ref|YP_005842217.1| - 0.0085 15.5 0.2 0.057 12.8 0.1 2.0 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|385805819|ref|YP_005842217.1| - 0.014 15.4 0.5 0.12 12.4 0.1 2.2 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|385805819|ref|YP_005842217.1| - 0.051 13.8 0.4 0.14 12.4 0.4 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|385805819|ref|YP_005842217.1| - 0.17 11.1 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain 4HBT PF03061.22 gi|385805821|ref|YP_005842219.1| - 0.00012 22.4 0.0 0.00015 22.1 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Peptidase_M28 PF04389.17 gi|385805822|ref|YP_005842220.1| - 1.8e-09 37.6 0.0 3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF4910 PF16254.5 gi|385805822|ref|YP_005842220.1| - 1.9e-08 33.5 0.3 2.3e-07 29.9 0.0 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4910) PA PF02225.22 gi|385805822|ref|YP_005842220.1| - 0.0053 16.8 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 PA domain PALP PF00291.25 gi|385805823|ref|YP_005842221.1| - 2.4e-80 270.1 0.2 2.9e-80 269.8 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|385805823|ref|YP_005842221.1| - 3.8e-06 26.6 0.9 8.6e-06 25.4 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|385805823|ref|YP_005842221.1| - 0.00047 20.7 0.0 0.002 18.7 0.0 2.1 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|385805823|ref|YP_005842221.1| - 0.0032 17.4 0.0 0.0082 16.1 0.0 1.8 1 1 0 1 1 1 1 ACT domain AdoHcyase PF05221.17 gi|385805824|ref|YP_005842222.1| - 4.6e-73 246.0 0.0 2.8e-42 144.9 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|385805824|ref|YP_005842222.1| - 9.8e-58 194.8 0.8 9.8e-58 194.8 0.8 1.8 3 0 0 3 3 3 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385805824|ref|YP_005842222.1| - 8.7e-11 41.5 0.3 2.2e-10 40.2 0.2 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|385805824|ref|YP_005842222.1| - 7.1e-10 38.7 0.4 1.4e-09 37.7 0.4 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NifT PF06988.11 gi|385805824|ref|YP_005842222.1| - 0.0026 17.5 0.1 0.0084 15.9 0.0 1.9 2 0 0 2 2 2 1 NifT/FixU protein AlaDh_PNT_C PF01262.21 gi|385805824|ref|YP_005842222.1| - 0.012 15.0 4.0 0.04 13.2 3.6 2.1 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|385805824|ref|YP_005842222.1| - 0.026 14.8 0.3 0.088 13.1 0.3 2.0 1 0 0 1 1 1 0 TrkA-N domain PALP PF00291.25 gi|385805824|ref|YP_005842222.1| - 0.054 12.9 0.2 4.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme 3HCDH_N PF02737.18 gi|385805824|ref|YP_005842222.1| - 0.08 12.8 0.8 0.18 11.7 0.8 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|385805825|ref|YP_005842223.1| - 2.7e-69 233.6 0.1 3.2e-69 233.3 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|385805825|ref|YP_005842223.1| - 0.00036 20.6 0.0 0.0043 17.1 0.0 2.1 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|385805825|ref|YP_005842223.1| - 0.021 14.1 0.2 0.037 13.4 0.2 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CRF1 PF10380.9 gi|385805825|ref|YP_005842223.1| - 0.068 13.5 0.1 0.24 11.7 0.0 1.9 2 0 0 2 2 2 0 Transcription factor CRF1 F420_oxidored PF03807.17 gi|385805825|ref|YP_005842223.1| - 0.072 13.7 0.0 0.22 12.1 0.0 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Translin PF01997.16 gi|385805826|ref|YP_005842224.1| - 4.2e-12 46.5 0.1 1.2e-10 41.7 0.1 2.1 1 1 0 1 1 1 1 Translin family PPR_2 PF13041.6 gi|385805826|ref|YP_005842224.1| - 0.0079 16.4 3.9 0.57 10.4 0.2 3.7 4 0 0 4 4 4 1 PPR repeat family Paf67 PF10255.9 gi|385805826|ref|YP_005842224.1| - 0.051 12.6 0.0 0.087 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase I-associated factor PAF67 YycI PF09648.10 gi|385805826|ref|YP_005842224.1| - 0.056 13.0 0.1 0.075 12.6 0.1 1.2 1 0 0 1 1 1 0 YycH protein PPR PF01535.20 gi|385805826|ref|YP_005842224.1| - 1.5 9.3 4.4 21 5.7 0.2 3.8 4 0 0 4 4 4 0 PPR repeat CGGC PF08821.11 gi|385805827|ref|YP_005842225.1| - 9.6e-31 106.1 0.4 1.2e-30 105.8 0.4 1.1 1 0 0 1 1 1 1 CGGC domain PBP_like PF12727.7 gi|385805829|ref|YP_005842227.1| - 4.8e-31 107.4 0.0 6.6e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|385805829|ref|YP_005842227.1| - 2.1e-05 24.4 0.0 3.9e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PALP PF00291.25 gi|385805830|ref|YP_005842228.1| - 1e-11 44.8 0.0 3.9e-05 23.2 0.0 2.7 1 1 1 2 2 2 2 Pyridoxal-phosphate dependent enzyme PadR PF03551.14 gi|385805830|ref|YP_005842228.1| - 0.042 13.8 0.2 0.1 12.6 0.2 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|385805830|ref|YP_005842228.1| - 0.045 13.7 0.4 4.5 7.3 0.1 2.7 2 0 0 2 2 2 0 HTH domain Peptidase_M29 PF02073.15 gi|385805831|ref|YP_005842229.1| - 1.2e-89 301.0 0.0 1.4e-89 300.7 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Glyco_hydro_62 PF03664.13 gi|385805831|ref|YP_005842229.1| - 0.044 13.1 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 62 Cation_efflux PF01545.21 gi|385805833|ref|YP_005842231.1| - 6e-41 140.4 14.5 7e-41 140.2 14.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|385805833|ref|YP_005842231.1| - 9.1e-22 77.0 1.8 1.6e-21 76.2 1.8 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF996 PF06195.13 gi|385805833|ref|YP_005842231.1| - 2.5 8.4 14.2 0.42 10.9 5.6 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF996) Cren7 PF11520.8 gi|385805835|ref|YP_005842233.1| - 3.9e-31 106.7 2.6 4.2e-31 106.6 2.6 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 PH_15 PF17339.2 gi|385805835|ref|YP_005842233.1| - 0.091 12.7 0.0 0.1 12.5 0.0 1.0 1 0 0 1 1 1 0 PH domain Metallophos PF00149.28 gi|385805836|ref|YP_005842234.1| - 2.2e-13 51.2 0.3 4e-13 50.3 0.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385805836|ref|YP_005842234.1| - 1e-05 25.8 0.0 6.4e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ssDNA_DBD PF18333.1 gi|385805836|ref|YP_005842234.1| - 0.021 14.9 0.1 0.04 14.0 0.1 1.4 1 0 0 1 1 1 0 Non-canonical single-stranded DNA-binding domain N_formyltrans_C PF18216.1 gi|385805836|ref|YP_005842234.1| - 0.081 12.6 0.2 1.2 8.9 0.0 2.6 2 0 0 2 2 2 0 N-formyltransferase dimerization C-terminal domain AAA_23 PF13476.6 gi|385805837|ref|YP_005842235.1| - 6.1e-19 69.3 26.8 6.1e-19 69.3 26.8 6.6 1 1 4 5 5 1 1 AAA domain AAA_15 PF13175.6 gi|385805837|ref|YP_005842235.1| - 5.3e-15 56.0 62.1 5.9e-13 49.3 29.5 4.1 1 1 3 4 4 3 2 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|385805837|ref|YP_005842235.1| - 1.9e-11 43.6 1.9 1.9e-11 43.6 1.9 8.8 10 0 0 10 10 9 1 Rad50 zinc hook motif SMC_N PF02463.19 gi|385805837|ref|YP_005842235.1| - 7.4e-10 38.6 51.5 1.2e-08 34.7 51.5 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385805837|ref|YP_005842235.1| - 9.9e-10 38.7 30.9 1.5e-06 28.3 4.6 4.3 1 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SbcCD_C PF13558.6 gi|385805837|ref|YP_005842235.1| - 3.5e-07 30.4 0.0 9.9e-07 28.9 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|385805837|ref|YP_005842235.1| - 1.6e-06 27.7 0.0 3.3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|385805837|ref|YP_005842235.1| - 1.7e-06 27.2 92.6 0.0065 15.4 18.3 4.5 2 1 1 4 4 4 4 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|385805837|ref|YP_005842235.1| - 1.4e-05 25.1 15.1 1.4e-05 25.1 15.1 5.7 3 1 2 5 5 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|385805837|ref|YP_005842235.1| - 0.00026 18.7 64.8 0.019 12.5 26.4 3.5 2 1 1 3 3 3 3 Protein of unknown function (DUF3584) AAA_27 PF13514.6 gi|385805837|ref|YP_005842235.1| - 0.00099 18.7 0.2 0.00099 18.7 0.2 3.9 4 0 0 4 4 4 1 AAA domain ABC_tran PF00005.27 gi|385805837|ref|YP_005842235.1| - 0.001 19.6 0.0 0.001 19.6 0.0 6.0 2 1 2 4 4 3 1 ABC transporter AAA_16 PF13191.6 gi|385805837|ref|YP_005842235.1| - 0.0021 18.5 1.3 0.0084 16.5 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain DHR10 PF18595.1 gi|385805837|ref|YP_005842235.1| - 0.012 15.6 8.3 0.012 15.6 8.3 8.6 5 4 4 9 9 9 0 Designed helical repeat protein 10 domain AAA_13 PF13166.6 gi|385805837|ref|YP_005842235.1| - 0.025 13.3 92.4 0.0078 14.9 22.3 5.0 2 2 2 4 4 4 0 AAA domain AAA_33 PF13671.6 gi|385805837|ref|YP_005842235.1| - 0.057 13.6 0.1 0.26 11.4 0.0 2.2 2 0 0 2 2 1 0 AAA domain MukB PF04310.12 gi|385805837|ref|YP_005842235.1| - 0.13 12.1 0.0 0.13 12.1 0.0 4.0 3 2 0 3 3 3 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|385805837|ref|YP_005842235.1| - 0.13 12.2 0.1 0.13 12.2 0.1 4.5 5 1 1 6 6 6 0 RsgA GTPase AAA_5 PF07728.14 gi|385805837|ref|YP_005842235.1| - 0.17 11.9 3.3 0.45 10.5 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) CRPV_capsid PF08762.10 gi|385805837|ref|YP_005842235.1| - 0.36 10.5 2.7 1.1 8.8 2.7 1.9 1 1 0 1 1 1 0 CRPV capsid protein like HrpB7 PF09486.10 gi|385805837|ref|YP_005842235.1| - 0.53 10.7 31.7 0.11 12.9 10.1 5.7 4 2 1 5 5 5 0 Bacterial type III secretion protein (HrpB7) APG6_N PF17675.1 gi|385805837|ref|YP_005842235.1| - 0.77 10.3 119.6 0.024 15.2 18.7 7.6 3 2 6 9 9 8 0 Apg6 coiled-coil region ADIP PF11559.8 gi|385805837|ref|YP_005842235.1| - 0.86 9.7 80.3 0.11 12.6 12.7 6.3 3 3 3 6 6 6 0 Afadin- and alpha -actinin-Binding DUF5082 PF16888.5 gi|385805837|ref|YP_005842235.1| - 3 8.1 74.3 0.037 14.3 14.9 6.7 3 3 2 5 5 4 0 Domain of unknown function (DUF5082) Baculo_PEP_C PF04513.12 gi|385805837|ref|YP_005842235.1| - 3.8 7.5 28.4 0.99 9.4 1.1 5.6 3 2 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|385805837|ref|YP_005842235.1| - 7.3 7.1 33.1 12 6.4 1.3 7.6 5 3 3 8 8 8 0 Nucleopolyhedrovirus P10 protein NurA PF09376.10 gi|385805838|ref|YP_005842236.1| - 5.2e-10 39.4 0.2 1.1e-09 38.4 0.2 1.6 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|385805839|ref|YP_005842237.1| - 7e-40 137.5 0.4 1.3e-39 136.6 0.4 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|385805839|ref|YP_005842237.1| - 1.7e-07 30.3 0.0 2.9e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|385805839|ref|YP_005842237.1| - 2.1e-06 27.8 0.1 7e-06 26.1 0.1 2.0 1 0 0 1 1 1 1 HAS barrel domain AAA_10 PF12846.7 gi|385805839|ref|YP_005842237.1| - 0.021 13.8 0.1 0.72 8.7 0.0 2.4 2 1 0 2 2 2 0 AAA-like domain YdjM PF04307.14 gi|385805840|ref|YP_005842238.1| - 1.7e-22 79.5 0.8 1.4e-21 76.5 0.8 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2985 PF11204.8 gi|385805840|ref|YP_005842238.1| - 0.26 11.4 3.6 0.29 11.3 0.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2985) Fer4_13 PF13370.6 gi|385805841|ref|YP_005842239.1| - 7.6e-21 74.4 0.8 9.3e-21 74.1 0.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|385805841|ref|YP_005842239.1| - 1.8e-20 73.4 1.4 2.1e-20 73.2 1.4 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_7 PF12838.7 gi|385805841|ref|YP_005842239.1| - 1e-07 32.4 10.6 9.8e-05 22.9 2.2 2.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385805841|ref|YP_005842239.1| - 4.5e-07 29.4 7.4 6.7e-06 25.7 4.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385805841|ref|YP_005842239.1| - 5.5e-06 26.2 2.4 5.5e-06 26.2 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|385805841|ref|YP_005842239.1| - 1.4e-05 25.1 4.0 5.8e-05 23.1 4.2 1.9 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385805841|ref|YP_005842239.1| - 6.6e-05 22.8 3.5 6.6e-05 22.8 3.5 1.9 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385805841|ref|YP_005842239.1| - 0.00011 22.7 0.2 0.00014 22.3 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385805841|ref|YP_005842239.1| - 0.00039 20.7 0.8 0.00039 20.7 0.8 2.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385805841|ref|YP_005842239.1| - 0.001 19.5 1.4 0.0017 18.8 1.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385805841|ref|YP_005842239.1| - 0.0016 18.5 6.7 0.0082 16.3 6.7 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385805841|ref|YP_005842239.1| - 0.003 18.5 3.5 0.028 15.3 0.5 2.2 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_19 PF06902.11 gi|385805841|ref|YP_005842239.1| - 0.0046 17.0 4.2 0.018 15.1 4.2 1.8 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_22 PF17179.4 gi|385805841|ref|YP_005842239.1| - 0.0093 16.8 1.2 0.016 16.1 1.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385805841|ref|YP_005842239.1| - 0.015 15.4 2.2 0.015 15.4 2.2 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain FeoB_N PF02421.18 gi|385805842|ref|YP_005842240.1| - 2.3e-46 157.1 0.0 4.1e-46 156.4 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|385805842|ref|YP_005842240.1| - 9.4e-18 64.5 20.8 1.6e-14 54.1 2.9 3.5 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|385805842|ref|YP_005842240.1| - 3.4e-17 62.6 0.0 7.1e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_Cyto PF17910.1 gi|385805842|ref|YP_005842240.1| - 3.2e-13 50.0 2.5 3.2e-13 50.0 2.5 1.7 2 0 0 2 2 2 1 FeoB cytosolic helical domain FeoB_C PF07664.12 gi|385805842|ref|YP_005842240.1| - 2.4e-12 46.3 1.1 2.4e-12 46.3 1.1 3.1 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus RsgA_GTPase PF03193.16 gi|385805842|ref|YP_005842240.1| - 0.032 14.1 0.1 11 5.9 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase Septin PF00735.18 gi|385805842|ref|YP_005842240.1| - 0.094 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Septin Dynamin_N PF00350.23 gi|385805842|ref|YP_005842240.1| - 0.22 11.6 0.6 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 Dynamin family DUF2207 PF09972.9 gi|385805842|ref|YP_005842240.1| - 4.4 5.9 18.1 0.0037 16.1 1.9 2.6 3 0 0 3 3 3 0 Predicted membrane protein (DUF2207) HAD_2 PF13419.6 gi|385805843|ref|YP_005842241.1| - 1e-14 55.1 0.0 2.4e-14 53.8 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385805843|ref|YP_005842241.1| - 1.9e-06 28.3 0.0 3.9e-06 27.3 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|385805843|ref|YP_005842241.1| - 6.1e-06 26.2 0.0 9.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like GHMP_kinases_C PF08544.13 gi|385805844|ref|YP_005842242.1| - 1.2e-15 57.6 0.2 3.8e-15 56.0 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|385805844|ref|YP_005842242.1| - 3.7e-14 52.7 0.1 8e-14 51.6 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|385805844|ref|YP_005842242.1| - 2.3e-07 30.2 0.0 5.9e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 Galactokinase galactose-binding signature SH3_19 PF18597.1 gi|385805844|ref|YP_005842242.1| - 0.044 13.6 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Myosin X N-terminal SH3 domain Transcrip_act PF04949.13 gi|385805844|ref|YP_005842242.1| - 0.12 12.3 0.9 0.3 10.9 0.7 1.7 1 1 0 1 1 1 0 Transcriptional activator TctA PF01970.16 gi|385805845|ref|YP_005842243.1| - 1e-25 90.4 40.1 1.4e-25 89.9 40.1 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Bap31 PF05529.12 gi|385805845|ref|YP_005842243.1| - 5.3 6.9 7.3 7.9 6.3 1.3 2.9 3 0 0 3 3 3 0 Bap31/Bap29 transmembrane region Virul_fac_BrkB PF03631.15 gi|385805846|ref|YP_005842244.1| - 0.0069 16.0 0.3 0.0079 15.8 0.3 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF296 PF03479.15 gi|385805847|ref|YP_005842245.1| - 7.6e-16 58.4 0.1 8.7e-16 58.2 0.1 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain DrsE_2 PF13686.6 gi|385805848|ref|YP_005842246.1| - 5e-14 52.5 0.2 3.6e-08 33.4 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|385805848|ref|YP_005842246.1| - 4.9e-09 36.6 0.4 1.3e-08 35.2 0.4 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family TAtT PF16811.5 gi|385805848|ref|YP_005842246.1| - 0.015 14.7 0.1 0.018 14.3 0.1 1.1 1 0 0 1 1 1 0 TRAP transporter T-component PhaP_Bmeg PF09602.10 gi|385805848|ref|YP_005842246.1| - 0.032 14.2 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF1743 PF08489.11 gi|385805849|ref|YP_005842247.1| - 1.8e-28 98.9 0.0 3.6e-28 97.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|385805849|ref|YP_005842247.1| - 5.7e-07 29.4 0.1 1.2e-06 28.4 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|385805849|ref|YP_005842247.1| - 0.0017 18.2 2.4 0.0034 17.3 2.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|385805849|ref|YP_005842247.1| - 0.006 16.6 0.8 0.011 15.8 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon C1_1 PF00130.22 gi|385805849|ref|YP_005842247.1| - 0.047 13.6 0.9 0.083 12.8 0.9 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 gi|385805849|ref|YP_005842247.1| - 0.049 13.7 0.7 13 6.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|385805849|ref|YP_005842247.1| - 0.067 12.6 3.4 0.55 9.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385805849|ref|YP_005842247.1| - 0.17 11.9 1.6 0.32 11.0 1.6 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf_Rg PF17915.1 gi|385805849|ref|YP_005842247.1| - 0.31 10.5 2.0 0.82 9.1 2.0 1.6 1 0 0 1 1 1 0 Reverse gyrase zinc finger zf-NADH-PPase PF09297.11 gi|385805849|ref|YP_005842247.1| - 0.4 10.4 1.4 0.8 9.4 1.4 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|385805849|ref|YP_005842247.1| - 0.47 10.4 2.4 1 9.3 2.4 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit AsnC_trans_reg PF01037.21 gi|385805850|ref|YP_005842248.1| - 4e-15 55.5 0.7 4.4e-15 55.4 0.7 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GHMP_kinases_C PF08544.13 gi|385805851|ref|YP_005842249.1| - 0.00017 21.9 0.1 0.0011 19.3 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|385805851|ref|YP_005842249.1| - 0.027 14.7 0.2 0.054 13.7 0.2 1.5 1 0 0 1 1 1 0 GHMP kinases N terminal domain Ribo_biogen_C PF04034.13 gi|385805852|ref|YP_005842250.1| - 2.3e-39 134.0 0.0 2.9e-39 133.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal CheZ PF04344.13 gi|385805853|ref|YP_005842251.1| - 0.05 13.5 0.2 0.2 11.5 0.1 1.8 2 0 0 2 2 2 0 Chemotaxis phosphatase, CheZ Pribosyltran PF00156.27 gi|385805854|ref|YP_005842252.1| - 2.1e-25 89.1 0.0 3.2e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF956 PF06115.11 gi|385805854|ref|YP_005842252.1| - 0.00022 20.9 1.0 0.014 15.1 0.3 2.6 3 0 0 3 3 3 2 Domain of unknown function (DUF956) UPRTase PF14681.6 gi|385805854|ref|YP_005842252.1| - 0.0042 16.6 0.0 0.0058 16.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase ThiS PF02597.20 gi|385805855|ref|YP_005842253.1| - 3.4e-06 27.6 0.0 4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|385805855|ref|YP_005842253.1| - 0.011 16.0 0.1 0.019 15.3 0.1 1.6 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) Ribosomal_S17e PF00833.18 gi|385805856|ref|YP_005842254.1| - 6.2e-18 64.9 0.6 7.1e-18 64.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal S17 SSXT PF05030.12 gi|385805856|ref|YP_005842254.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 SSXT protein (N-terminal region) Nitroreductase PF00881.24 gi|385805857|ref|YP_005842255.1| - 4e-29 101.8 0.0 4.7e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|385805857|ref|YP_005842255.1| - 1.1e-06 28.4 0.0 0.00078 19.1 0.0 2.8 1 1 2 3 3 3 2 Putative TM nitroreductase Ldr_toxin PF13940.6 gi|385805858|ref|YP_005842256.1| - 0.013 15.6 0.8 0.013 15.6 0.8 2.4 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system TM_helix PF05552.12 gi|385805858|ref|YP_005842256.1| - 0.093 12.7 1.3 0.093 12.7 1.3 3.0 2 1 0 2 2 2 0 Conserved TM helix eIF-1a PF01176.19 gi|385805859|ref|YP_005842257.1| - 5.5e-19 67.7 0.1 6.8e-19 67.4 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|385805860|ref|YP_005842258.1| - 1.1e-59 201.3 0.1 1.2e-59 201.1 0.1 1.0 1 0 0 1 1 1 1 RIO1 family Pkinase_fungal PF17667.1 gi|385805860|ref|YP_005842258.1| - 0.0012 17.7 0.6 0.002 17.0 0.6 1.3 1 0 0 1 1 1 1 Fungal protein kinase APH PF01636.23 gi|385805860|ref|YP_005842258.1| - 0.0069 16.3 0.0 0.058 13.3 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|385805860|ref|YP_005842258.1| - 0.14 11.3 0.0 0.56 9.4 0.0 1.8 1 1 1 2 2 2 0 Fructosamine kinase KH_1 PF00013.29 gi|385805861|ref|YP_005842259.1| - 1.8e-08 34.1 15.8 2.3e-05 24.1 1.6 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|385805861|ref|YP_005842259.1| - 0.22 11.4 14.2 0.033 14.0 3.1 2.8 2 1 0 2 2 2 0 KH domain ABC_tran PF00005.27 gi|385805862|ref|YP_005842260.1| - 1.1e-37 129.6 0.3 2.5e-17 63.7 0.0 3.0 2 1 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|385805862|ref|YP_005842260.1| - 1.8e-12 46.9 1.4 4.3e-12 45.6 1.4 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|385805862|ref|YP_005842260.1| - 5e-12 45.7 6.4 0.00039 19.9 0.1 4.1 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|385805862|ref|YP_005842260.1| - 5.5e-12 46.1 11.1 0.0066 16.3 0.1 4.5 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 gi|385805862|ref|YP_005842260.1| - 9.4e-07 28.9 0.0 0.00094 19.1 0.0 2.9 3 0 0 3 3 2 1 NACHT domain AAA_23 PF13476.6 gi|385805862|ref|YP_005842260.1| - 2.2e-06 28.3 0.3 0.1 13.1 0.1 2.7 3 0 0 3 3 2 2 AAA domain Fer4_21 PF14697.6 gi|385805862|ref|YP_005842260.1| - 2.6e-06 27.4 7.9 4.9e-06 26.6 7.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385805862|ref|YP_005842260.1| - 4e-06 26.4 5.4 4e-06 26.4 5.4 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_24 PF13479.6 gi|385805862|ref|YP_005842260.1| - 7.9e-06 25.7 0.3 0.034 13.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4_6 PF12837.7 gi|385805862|ref|YP_005842260.1| - 1e-05 25.4 11.6 0.0023 17.9 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|385805862|ref|YP_005842260.1| - 1.3e-05 25.2 9.2 0.0016 18.5 1.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_22 PF13401.6 gi|385805862|ref|YP_005842260.1| - 2.3e-05 24.7 0.0 0.041 14.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|385805862|ref|YP_005842260.1| - 3.2e-05 24.3 0.0 0.18 12.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|385805862|ref|YP_005842260.1| - 4.3e-05 23.8 0.0 0.085 13.3 0.0 2.7 2 0 0 2 2 2 1 RNA helicase AAA_15 PF13175.6 gi|385805862|ref|YP_005842260.1| - 4.8e-05 23.2 0.4 0.27 10.9 0.0 2.6 3 0 0 3 3 2 2 AAA ATPase domain SRP54 PF00448.22 gi|385805862|ref|YP_005842260.1| - 5.4e-05 22.9 0.1 0.12 12.0 0.0 2.5 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|385805862|ref|YP_005842260.1| - 0.00038 20.9 0.0 0.29 11.5 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|385805862|ref|YP_005842260.1| - 0.00042 20.3 0.0 0.18 11.7 0.0 2.4 2 0 0 2 2 2 1 Rad17 P-loop domain Fer4_7 PF12838.7 gi|385805862|ref|YP_005842260.1| - 0.00053 20.5 1.4 0.00053 20.5 1.4 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385805862|ref|YP_005842260.1| - 0.00065 19.8 8.3 0.0012 19.0 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain MobB PF03205.14 gi|385805862|ref|YP_005842260.1| - 0.00078 19.4 0.1 0.3 11.0 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 gi|385805862|ref|YP_005842260.1| - 0.001 19.1 0.5 0.59 10.2 0.0 2.9 3 0 0 3 3 2 1 AAA domain Fer4_16 PF13484.6 gi|385805862|ref|YP_005842260.1| - 0.0011 19.9 6.1 0.0084 17.0 0.3 2.8 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_18 PF13238.6 gi|385805862|ref|YP_005842260.1| - 0.0011 19.5 0.1 1.5 9.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|385805862|ref|YP_005842260.1| - 0.0012 19.0 0.0 0.86 9.8 0.0 3.3 3 1 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|385805862|ref|YP_005842260.1| - 0.0013 18.6 0.1 1.8 8.4 0.0 3.0 3 0 0 3 3 3 1 RsgA GTPase AAA_19 PF13245.6 gi|385805862|ref|YP_005842260.1| - 0.0019 18.6 0.5 1.2 9.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|385805862|ref|YP_005842260.1| - 0.0023 17.9 1.7 0.1 12.5 0.1 2.8 2 0 0 2 2 2 1 NTPase DUF87 PF01935.17 gi|385805862|ref|YP_005842260.1| - 0.0025 17.9 0.5 3.5 7.7 0.1 2.6 3 0 0 3 3 2 0 Helicase HerA, central domain Fer4_2 PF12797.7 gi|385805862|ref|YP_005842260.1| - 0.0042 17.1 2.7 0.0042 17.1 2.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain VirE PF05272.11 gi|385805862|ref|YP_005842260.1| - 0.0077 16.0 0.0 0.43 10.3 0.0 2.2 2 0 0 2 2 2 1 Virulence-associated protein E NB-ARC PF00931.22 gi|385805862|ref|YP_005842260.1| - 0.0091 15.2 0.6 0.65 9.1 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.6 gi|385805862|ref|YP_005842260.1| - 0.012 15.9 0.0 8.1 6.7 0.0 2.8 3 0 0 3 3 2 0 AAA domain TsaE PF02367.17 gi|385805862|ref|YP_005842260.1| - 0.012 15.6 0.2 1.3 9.0 0.0 2.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|385805862|ref|YP_005842260.1| - 0.012 15.4 0.0 0.23 11.2 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_7 PF12775.7 gi|385805862|ref|YP_005842260.1| - 0.016 14.7 0.1 0.46 10.0 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|385805862|ref|YP_005842260.1| - 0.017 15.2 0.6 10 6.3 0.1 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|385805862|ref|YP_005842260.1| - 0.024 13.6 1.3 1.6 7.7 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|385805862|ref|YP_005842260.1| - 0.027 14.2 0.1 3.9 7.1 0.0 2.7 3 0 0 3 3 2 0 AAA domain SbcCD_C PF13558.6 gi|385805862|ref|YP_005842260.1| - 0.027 14.7 0.2 18 5.6 0.0 3.0 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|385805862|ref|YP_005842260.1| - 0.044 13.5 2.3 6.8 6.5 0.1 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_32 PF13654.6 gi|385805862|ref|YP_005842260.1| - 0.047 12.5 0.0 0.91 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Septin PF00735.18 gi|385805862|ref|YP_005842260.1| - 0.051 12.9 0.0 2.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Septin Roc PF08477.13 gi|385805862|ref|YP_005842260.1| - 0.079 13.2 0.0 2 8.6 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ATPase_2 PF01637.18 gi|385805862|ref|YP_005842260.1| - 0.095 12.6 1.9 0.61 10.0 0.0 2.5 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|385805862|ref|YP_005842260.1| - 0.1 12.6 0.1 5.5 7.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|385805862|ref|YP_005842260.1| - 0.1 11.2 0.1 2.9 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_11 PF13247.6 gi|385805862|ref|YP_005842260.1| - 0.11 12.6 2.0 0.2 11.8 2.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain KAP_NTPase PF07693.14 gi|385805862|ref|YP_005842260.1| - 0.12 11.6 0.0 0.7 9.1 0.0 2.0 2 0 0 2 2 2 0 KAP family P-loop domain ATP_bind_1 PF03029.17 gi|385805862|ref|YP_005842260.1| - 0.12 12.1 0.0 0.85 9.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ATP-synt_ab PF00006.25 gi|385805862|ref|YP_005842260.1| - 0.14 11.8 0.1 19 4.8 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|385805862|ref|YP_005842260.1| - 0.14 11.8 0.1 10 5.8 0.0 2.7 2 0 0 2 2 2 0 Thymidylate kinase AAA_25 PF13481.6 gi|385805862|ref|YP_005842260.1| - 0.19 11.3 0.0 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_17 PF13534.6 gi|385805862|ref|YP_005842260.1| - 0.44 11.1 8.2 1.9 9.1 8.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385805862|ref|YP_005842260.1| - 1.1 10.3 15.3 0.14 13.2 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385805862|ref|YP_005842260.1| - 5.6 7.7 13.2 1.7 9.3 3.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain NMD3 PF04981.13 gi|385805863|ref|YP_005842261.1| - 2.9e-42 144.8 0.7 2.9e-42 144.8 0.7 1.4 2 0 0 2 2 2 1 NMD3 family POTRA_1 PF08478.10 gi|385805863|ref|YP_005842261.1| - 0.019 15.2 0.2 0.054 13.8 0.2 1.7 1 0 0 1 1 1 0 POTRA domain, FtsQ-type Rtt106_N PF18215.1 gi|385805863|ref|YP_005842261.1| - 0.08 12.7 0.1 1.8 8.4 0.0 2.7 3 0 0 3 3 3 0 Histone chaperone Rtt106 N-terminal domain DUF104 PF01954.16 gi|385805863|ref|YP_005842261.1| - 1.7 9.1 6.8 0.61 10.6 2.1 2.7 3 0 0 3 3 3 0 Protein of unknown function DUF104 zf-C4_ClpX PF06689.13 gi|385805863|ref|YP_005842261.1| - 7.3 6.6 7.5 20 5.2 2.0 3.3 3 0 0 3 3 3 0 ClpX C4-type zinc finger DUF424 PF04242.13 gi|385805864|ref|YP_005842262.1| - 3.7e-19 68.8 0.4 4.2e-19 68.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) eIF-5_eIF-2B PF01873.17 gi|385805865|ref|YP_005842263.1| - 4.4e-35 120.1 0.0 5.9e-35 119.7 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zf-RING_7 PF02591.15 gi|385805865|ref|YP_005842263.1| - 0.0023 18.1 0.1 0.096 12.9 0.0 2.3 2 0 0 2 2 2 1 C4-type zinc ribbon domain Lar_restr_allev PF14354.6 gi|385805865|ref|YP_005842263.1| - 0.021 15.2 0.7 0.039 14.3 0.7 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|385805865|ref|YP_005842263.1| - 0.025 13.9 0.5 0.042 13.2 0.5 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger Elf1 PF05129.13 gi|385805865|ref|YP_005842263.1| - 0.042 13.9 0.1 0.071 13.2 0.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.11 gi|385805865|ref|YP_005842263.1| - 0.092 12.4 1.4 0.32 10.7 1.4 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|385805865|ref|YP_005842263.1| - 0.11 12.7 0.4 2.3 8.4 0.1 2.4 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 gi|385805865|ref|YP_005842263.1| - 0.25 11.2 2.4 7.4 6.6 0.0 2.6 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_13 PF18508.1 gi|385805865|ref|YP_005842263.1| - 0.31 10.6 0.2 0.31 10.6 0.2 2.2 2 0 0 2 2 2 0 Zinc finger domain MMR_HSR1 PF01926.23 gi|385805866|ref|YP_005842264.1| - 4.7e-19 68.5 1.3 7.4e-19 67.9 0.1 1.9 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|385805866|ref|YP_005842264.1| - 8.4e-15 54.6 0.8 1.8e-14 53.5 0.8 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B NOG1 PF06858.14 gi|385805866|ref|YP_005842264.1| - 2.9e-14 52.6 0.4 7.5e-14 51.3 0.4 1.8 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) PduV-EutP PF10662.9 gi|385805866|ref|YP_005842264.1| - 5.1e-10 39.3 0.3 1.7e-09 37.5 0.3 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.27 gi|385805866|ref|YP_005842264.1| - 4.6e-08 32.8 0.1 8.9e-05 22.1 0.2 2.7 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|385805866|ref|YP_005842264.1| - 9e-08 32.2 5.5 7.6e-05 22.7 1.2 2.7 1 1 1 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|385805866|ref|YP_005842264.1| - 2.1e-06 27.3 0.1 4.7e-06 26.1 0.1 1.6 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|385805866|ref|YP_005842264.1| - 3.9e-05 23.2 4.3 0.00013 21.4 1.2 2.7 2 1 0 2 2 2 1 ADP-ribosylation factor family ATPase_2 PF01637.18 gi|385805866|ref|YP_005842264.1| - 8.8e-05 22.5 5.0 0.00016 21.7 0.0 3.1 2 1 0 3 3 3 1 ATPase domain predominantly from Archaea Dynamin_N PF00350.23 gi|385805866|ref|YP_005842264.1| - 0.00011 22.3 4.7 0.16 12.0 0.2 2.9 2 1 1 3 3 3 2 Dynamin family Ras PF00071.22 gi|385805866|ref|YP_005842264.1| - 0.00013 21.6 0.1 0.00027 20.6 0.1 1.6 1 0 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|385805866|ref|YP_005842264.1| - 0.00015 21.6 4.3 0.053 13.3 0.1 3.1 3 1 1 4 4 4 2 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|385805866|ref|YP_005842264.1| - 0.0002 21.5 0.0 0.00066 19.9 0.0 1.9 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|385805866|ref|YP_005842264.1| - 0.0014 18.6 0.3 0.0014 18.6 0.3 2.3 2 1 0 2 2 2 1 C-terminal region of MMR_HSR1 domain AAA_14 PF13173.6 gi|385805866|ref|YP_005842264.1| - 0.0023 18.0 1.3 0.094 12.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|385805866|ref|YP_005842264.1| - 0.0023 18.3 0.0 0.024 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 gi|385805866|ref|YP_005842264.1| - 0.0078 15.8 0.1 2.2 7.8 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|385805866|ref|YP_005842264.1| - 0.012 16.0 0.4 0.059 13.8 0.1 2.4 2 2 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|385805866|ref|YP_005842264.1| - 0.012 16.1 0.0 0.033 14.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|385805866|ref|YP_005842264.1| - 0.017 15.5 0.1 0.27 11.6 0.0 2.4 2 0 0 2 2 2 0 RNA helicase KTI12 PF08433.10 gi|385805866|ref|YP_005842264.1| - 0.017 14.6 0.5 0.27 10.7 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|385805866|ref|YP_005842264.1| - 0.018 15.4 0.0 0.038 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|385805866|ref|YP_005842264.1| - 0.022 14.2 0.0 0.069 12.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial TniB protein AAA_33 PF13671.6 gi|385805866|ref|YP_005842264.1| - 0.023 14.8 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|385805866|ref|YP_005842264.1| - 0.029 14.6 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385805866|ref|YP_005842264.1| - 0.031 13.5 0.0 0.056 12.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain NOG1_N PF17835.1 gi|385805866|ref|YP_005842264.1| - 0.085 12.8 6.9 0.2 11.6 6.9 1.6 1 0 0 1 1 1 0 NOG1 N-terminal helical domain AAA PF00004.29 gi|385805867|ref|YP_005842265.1| - 1.2e-43 148.7 0.1 2.7e-43 147.6 0.1 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385805867|ref|YP_005842265.1| - 8.3e-17 60.7 0.2 2e-16 59.5 0.2 1.7 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|385805867|ref|YP_005842265.1| - 8.5e-09 35.2 0.4 2e-08 34.1 0.4 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|385805867|ref|YP_005842265.1| - 3.5e-07 30.5 1.2 7.7e-07 29.4 0.0 2.2 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|385805867|ref|YP_005842265.1| - 9.6e-06 25.4 0.2 5.4e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|385805867|ref|YP_005842265.1| - 1.2e-05 25.4 0.2 6.5e-05 22.9 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|385805867|ref|YP_005842265.1| - 3e-05 23.3 0.1 8.1e-05 21.9 0.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|385805867|ref|YP_005842265.1| - 7.7e-05 23.1 0.2 0.0077 16.6 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|385805867|ref|YP_005842265.1| - 0.0004 20.7 0.5 0.019 15.2 0.1 2.4 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|385805867|ref|YP_005842265.1| - 0.00085 18.6 2.3 0.0057 15.9 0.1 2.6 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|385805867|ref|YP_005842265.1| - 0.0019 18.5 1.2 0.0024 18.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain bZIP_1 PF00170.21 gi|385805867|ref|YP_005842265.1| - 0.0034 17.4 21.9 0.065 13.3 10.8 2.9 2 1 1 3 3 2 2 bZIP transcription factor Mg_chelatase PF01078.21 gi|385805867|ref|YP_005842265.1| - 0.0035 16.7 0.1 0.0083 15.5 0.1 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|385805867|ref|YP_005842265.1| - 0.0042 16.4 2.1 0.0064 15.8 0.0 2.3 3 0 0 3 3 3 1 Zeta toxin AAA_18 PF13238.6 gi|385805867|ref|YP_005842265.1| - 0.0043 17.6 1.1 0.025 15.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain Prot_ATP_OB_N PF17758.1 gi|385805867|ref|YP_005842265.1| - 0.0057 16.3 0.3 0.019 14.6 0.3 1.9 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_24 PF13479.6 gi|385805867|ref|YP_005842265.1| - 0.0063 16.3 0.1 0.025 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|385805867|ref|YP_005842265.1| - 0.0066 16.3 0.0 0.021 14.7 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Spc7 PF08317.11 gi|385805867|ref|YP_005842265.1| - 0.0071 15.3 7.4 0.016 14.1 7.4 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein RNA_helicase PF00910.22 gi|385805867|ref|YP_005842265.1| - 0.016 15.6 0.0 0.051 14.0 0.0 1.9 2 0 0 2 2 1 0 RNA helicase AAA_14 PF13173.6 gi|385805867|ref|YP_005842265.1| - 0.017 15.2 1.2 0.066 13.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|385805867|ref|YP_005842265.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|385805867|ref|YP_005842265.1| - 0.02 15.1 0.0 0.039 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|385805867|ref|YP_005842265.1| - 0.024 14.6 0.2 0.11 12.4 0.1 2.0 2 0 0 2 2 2 0 NACHT domain FlxA PF14282.6 gi|385805867|ref|YP_005842265.1| - 0.041 13.9 2.6 0.097 12.7 1.3 2.1 2 0 0 2 2 2 0 FlxA-like protein LCD1 PF09798.9 gi|385805867|ref|YP_005842265.1| - 0.041 12.4 7.7 0.061 11.8 7.7 1.1 1 0 0 1 1 1 0 DNA damage checkpoint protein GAS PF13851.6 gi|385805867|ref|YP_005842265.1| - 0.042 13.2 13.2 0.041 13.2 11.8 1.8 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding AAA_7 PF12775.7 gi|385805867|ref|YP_005842265.1| - 0.056 13.0 0.1 0.13 11.8 0.1 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region TsaE PF02367.17 gi|385805867|ref|YP_005842265.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Torsin PF06309.11 gi|385805867|ref|YP_005842265.1| - 0.063 13.4 0.0 0.2 11.8 0.0 1.8 1 0 0 1 1 1 0 Torsin Sigma54_activat PF00158.26 gi|385805867|ref|YP_005842265.1| - 0.074 12.8 0.3 0.27 10.9 0.0 2.0 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|385805867|ref|YP_005842265.1| - 0.12 11.9 0.0 0.33 10.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|385805867|ref|YP_005842265.1| - 0.13 11.6 6.3 0.19 11.0 0.1 2.6 3 0 0 3 3 3 0 KaiC ABC_tran PF00005.27 gi|385805867|ref|YP_005842265.1| - 0.16 12.4 1.4 1.9 9.0 0.1 2.8 2 1 0 2 2 2 0 ABC transporter AAA_13 PF13166.6 gi|385805867|ref|YP_005842265.1| - 0.18 10.4 8.8 7.4 5.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fmp27_WPPW PF10359.9 gi|385805867|ref|YP_005842265.1| - 0.28 10.0 2.8 0.45 9.3 2.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Cep57_CLD_2 PF14197.6 gi|385805867|ref|YP_005842265.1| - 0.37 10.9 10.5 8.1 6.6 6.7 2.7 3 0 0 3 3 2 0 Centrosome localisation domain of PPC89 V_ATPase_I PF01496.19 gi|385805867|ref|YP_005842265.1| - 0.51 8.2 3.3 0.72 7.7 3.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CENP-F_leu_zip PF10473.9 gi|385805867|ref|YP_005842265.1| - 0.58 10.2 14.4 0.18 11.9 10.8 2.0 2 0 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 UPF0242 PF06785.11 gi|385805867|ref|YP_005842265.1| - 0.66 10.1 9.3 1.5 8.9 9.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ERM PF00769.19 gi|385805867|ref|YP_005842265.1| - 0.75 9.6 13.7 2.6 7.8 13.7 1.8 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF2353 PF09789.9 gi|385805867|ref|YP_005842265.1| - 0.86 8.9 21.9 1.2 8.5 6.0 2.8 2 1 1 3 3 3 0 Uncharacterized coiled-coil protein (DUF2353) TMF_TATA_bd PF12325.8 gi|385805867|ref|YP_005842265.1| - 0.92 9.7 13.3 2.7 8.2 9.9 3.0 3 1 0 3 3 2 0 TATA element modulatory factor 1 TATA binding PI3K_P85_iSH2 PF16454.5 gi|385805867|ref|YP_005842265.1| - 1.2 8.8 11.7 4.5 6.8 11.6 2.0 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Fib_alpha PF08702.10 gi|385805867|ref|YP_005842265.1| - 1.2 9.4 5.5 3 8.0 5.5 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family APG6_N PF17675.1 gi|385805867|ref|YP_005842265.1| - 2 9.0 17.0 35 4.9 17.0 2.4 1 1 0 1 1 1 0 Apg6 coiled-coil region bZIP_2 PF07716.15 gi|385805867|ref|YP_005842265.1| - 5.4 7.2 16.7 10 6.3 4.2 2.7 1 1 1 2 2 2 0 Basic region leucine zipper DUF4795 PF16043.5 gi|385805867|ref|YP_005842265.1| - 6.2 6.4 12.1 0.67 9.5 6.0 2.4 4 0 0 4 4 3 0 Domain of unknown function (DUF4795) DUF737 PF05300.11 gi|385805867|ref|YP_005842265.1| - 7.2 6.9 13.1 7.5 6.9 11.6 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF737) KELK PF15796.5 gi|385805867|ref|YP_005842265.1| - 7.7 7.1 21.4 4.3 7.9 3.7 3.7 3 1 1 4 4 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase HTH_3 PF01381.22 gi|385805868|ref|YP_005842266.1| - 1.7e-09 37.6 3.2 2.9e-09 36.8 3.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|385805868|ref|YP_005842266.1| - 5.9e-05 23.3 0.1 0.0001 22.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|385805868|ref|YP_005842266.1| - 0.00054 19.8 0.4 0.0013 18.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PAW PF04721.17 gi|385805868|ref|YP_005842266.1| - 0.0007 19.4 4.1 0.001 18.9 4.1 1.3 1 0 0 1 1 1 1 PNGase C-terminal domain, mannose-binding module PAW HTH_19 PF12844.7 gi|385805868|ref|YP_005842266.1| - 0.0024 17.8 2.5 0.0024 17.8 2.5 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.7 gi|385805868|ref|YP_005842266.1| - 0.025 14.6 0.3 0.044 13.8 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Lum_binding PF00677.17 gi|385805868|ref|YP_005842266.1| - 0.12 12.4 0.2 0.38 10.8 0.1 1.8 1 1 1 2 2 2 0 Lumazine binding domain Rpr2 PF04032.16 gi|385805868|ref|YP_005842266.1| - 2.3 8.5 8.9 0.48 10.7 3.9 2.3 1 1 2 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DNA_pol_delta_4 PF04081.13 gi|385805868|ref|YP_005842266.1| - 2.4 8.5 11.6 0.39 11.1 7.5 1.7 1 1 1 2 2 2 0 DNA polymerase delta, subunit 4 MMR_HSR1 PF01926.23 gi|385805869|ref|YP_005842267.1| - 4e-19 68.8 0.1 9.6e-19 67.6 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|385805869|ref|YP_005842267.1| - 2.6e-11 44.0 2.6 2.6e-11 44.0 2.6 1.9 2 0 0 2 2 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|385805869|ref|YP_005842267.1| - 4.9e-09 36.7 0.4 9.2e-09 35.9 0.4 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|385805869|ref|YP_005842267.1| - 1.4e-08 34.4 3.2 2.3e-08 33.7 1.0 2.4 2 1 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|385805869|ref|YP_005842267.1| - 3.3e-07 30.0 0.2 0.00076 19.1 0.0 2.3 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|385805869|ref|YP_005842267.1| - 0.0002 21.3 0.6 0.00048 20.1 0.1 1.9 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|385805869|ref|YP_005842267.1| - 0.0016 17.9 0.1 0.0029 17.1 0.1 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|385805869|ref|YP_005842267.1| - 0.0022 17.5 1.3 0.0062 16.0 0.2 2.2 2 1 0 2 2 2 1 ADP-ribosylation factor family ABC_tran PF00005.27 gi|385805869|ref|YP_005842267.1| - 0.022 15.3 0.3 0.096 13.2 0.2 2.0 1 1 1 2 2 2 0 ABC transporter RsgA_GTPase PF03193.16 gi|385805869|ref|YP_005842267.1| - 0.037 13.9 0.1 1.6 8.6 0.0 2.6 2 0 0 2 2 2 0 RsgA GTPase PduV-EutP PF10662.9 gi|385805869|ref|YP_005842267.1| - 0.062 13.0 0.3 0.33 10.7 0.3 2.1 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.23 gi|385805869|ref|YP_005842267.1| - 0.14 12.2 1.6 0.2 11.7 0.2 2.0 2 1 0 2 2 2 0 Dynamin family DUF3618 PF12277.8 gi|385805869|ref|YP_005842267.1| - 4.7 7.5 11.7 14 6.0 1.5 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3618) Trm56 PF01994.16 gi|385805870|ref|YP_005842268.1| - 4.2e-46 155.7 0.0 6.1e-46 155.2 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 DUF460 PF04312.13 gi|385805870|ref|YP_005842268.1| - 0.14 11.9 0.1 0.33 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF460) TFIIE_alpha PF02002.17 gi|385805871|ref|YP_005842269.1| - 2.4e-21 75.6 2.2 2.4e-21 75.6 2.2 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|385805871|ref|YP_005842269.1| - 7.1e-05 22.7 0.7 0.21 11.6 0.1 2.5 2 0 0 2 2 2 2 HTH domain TrmB PF01978.19 gi|385805871|ref|YP_005842269.1| - 0.0042 16.9 0.6 0.013 15.4 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Mut7-C PF01927.16 gi|385805871|ref|YP_005842269.1| - 0.0047 17.0 1.7 0.99 9.5 0.1 2.3 1 1 1 2 2 2 2 Mut7-C RNAse domain Zn_ribbon_SprT PF17283.2 gi|385805871|ref|YP_005842269.1| - 0.0062 16.4 2.6 0.034 14.1 2.9 2.0 1 1 1 2 2 2 2 SprT-like zinc ribbon domain Rrf2 PF02082.20 gi|385805871|ref|YP_005842269.1| - 0.019 15.3 0.2 0.13 12.6 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator zinc-ribbons_6 PF07191.12 gi|385805871|ref|YP_005842269.1| - 0.02 14.8 0.6 0.032 14.2 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.14 gi|385805871|ref|YP_005842269.1| - 0.023 14.7 1.8 0.045 13.7 1.8 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid HypA PF01155.19 gi|385805871|ref|YP_005842269.1| - 0.03 14.4 0.1 0.039 14.0 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ima1_N PF09779.9 gi|385805871|ref|YP_005842269.1| - 0.033 15.0 1.1 0.067 14.1 1.1 1.6 1 0 0 1 1 1 0 Ima1 N-terminal domain DUF1400 PF07176.11 gi|385805871|ref|YP_005842269.1| - 0.039 14.2 0.5 0.97 9.7 0.1 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1400) FlhC PF05280.11 gi|385805871|ref|YP_005842269.1| - 0.081 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) HTH_IclR PF09339.10 gi|385805871|ref|YP_005842269.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain zf-C2H2 PF00096.26 gi|385805871|ref|YP_005842269.1| - 0.11 13.0 3.5 4.4 7.9 0.4 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_24 PF13412.6 gi|385805871|ref|YP_005842269.1| - 0.11 12.0 0.3 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding A2L_zn_ribbon PF08792.10 gi|385805871|ref|YP_005842269.1| - 0.15 11.8 2.0 2.7 7.8 0.2 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385805871|ref|YP_005842269.1| - 0.22 11.1 5.9 0.078 12.5 2.3 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|385805871|ref|YP_005842269.1| - 0.25 11.0 1.3 14 5.4 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 gi|385805871|ref|YP_005842269.1| - 0.25 12.3 2.6 16 6.7 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|385805871|ref|YP_005842269.1| - 0.39 10.9 5.6 6.9 6.9 0.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_2 PF12674.7 gi|385805871|ref|YP_005842269.1| - 0.71 10.6 6.5 1.7 9.3 0.5 2.6 2 1 1 3 3 2 0 Putative zinc ribbon domain C1_2 PF03107.16 gi|385805871|ref|YP_005842269.1| - 4.6 7.6 5.8 16 5.9 0.4 2.2 1 1 1 2 2 2 0 C1 domain DNA_methylase PF00145.17 gi|385805872|ref|YP_005842270.1| - 2.7e-42 145.3 0.0 1.9e-28 99.8 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|385805872|ref|YP_005842270.1| - 0.0027 17.3 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Fe-ADH_2 PF13685.6 gi|385805873|ref|YP_005842271.1| - 6.8e-68 229.1 0.2 9.3e-68 228.6 0.2 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|385805873|ref|YP_005842271.1| - 2.4e-28 99.0 0.2 2.7e-27 95.5 0.2 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|385805873|ref|YP_005842271.1| - 3.9e-09 36.1 0.0 0.00065 18.9 0.0 2.8 2 1 0 2 2 2 2 3-dehydroquinate synthase AIRC PF00731.20 gi|385805873|ref|YP_005842271.1| - 0.00016 21.2 0.1 0.00094 18.8 0.0 2.1 2 0 0 2 2 2 1 AIR carboxylase PFK PF00365.20 gi|385805873|ref|YP_005842271.1| - 0.029 13.7 0.1 0.057 12.7 0.0 1.5 2 0 0 2 2 2 0 Phosphofructokinase adh_short_C2 PF13561.6 gi|385805874|ref|YP_005842272.1| - 3.2e-48 164.3 0.0 4.3e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385805874|ref|YP_005842272.1| - 4.1e-35 121.0 0.0 5e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385805874|ref|YP_005842272.1| - 6.2e-07 29.5 0.0 1.6e-06 28.1 0.0 1.6 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.10 gi|385805874|ref|YP_005842272.1| - 0.011 15.1 0.0 0.015 14.7 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) 3HCDH_N PF02737.18 gi|385805874|ref|YP_005842272.1| - 0.038 13.9 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Med28 PF11594.8 gi|385805874|ref|YP_005842272.1| - 0.071 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 Mediator complex subunit 28 Asn_synthase PF00733.21 gi|385805875|ref|YP_005842273.1| - 1.5e-67 228.8 0.0 1.9e-67 228.4 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|385805875|ref|YP_005842273.1| - 9.3e-41 138.6 0.0 1.5e-40 138.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|385805875|ref|YP_005842273.1| - 6e-35 120.4 0.0 9.8e-35 119.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|385805875|ref|YP_005842273.1| - 0.003 17.0 0.1 0.0061 16.0 0.1 1.4 1 0 0 1 1 1 1 Aluminium induced protein MFS_1 PF07690.16 gi|385805876|ref|YP_005842274.1| - 1.6e-14 53.6 45.5 3.2e-07 29.6 19.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Kdo PF06293.14 gi|385805877|ref|YP_005842275.1| - 0.011 15.2 0.1 0.021 14.2 0.1 1.5 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family PAC2 PF09754.9 gi|385805878|ref|YP_005842276.1| - 1.4e-29 103.6 0.2 1.6e-29 103.5 0.2 1.0 1 0 0 1 1 1 1 PAC2 family ThiD2 PF17792.1 gi|385805878|ref|YP_005842276.1| - 0.026 15.0 0.0 0.045 14.2 0.0 1.3 1 0 0 1 1 1 0 ThiD2 family tRNA-synt_2 PF00152.20 gi|385805879|ref|YP_005842277.1| - 1e-84 284.3 0.7 1.3e-84 284.0 0.7 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|385805879|ref|YP_005842277.1| - 3.1e-14 52.7 1.9 3.1e-14 52.7 1.9 1.6 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|385805879|ref|YP_005842277.1| - 0.029 13.8 1.4 1.5 8.2 0.1 2.6 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) DUF1593 PF07632.11 gi|385805879|ref|YP_005842277.1| - 0.041 13.3 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1593) TetR_C_19 PF17924.1 gi|385805879|ref|YP_005842277.1| - 0.06 13.9 0.8 16 6.1 0.0 2.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain tRNA_anti_2 PF13742.6 gi|385805879|ref|YP_005842277.1| - 0.1 12.8 0.1 0.19 11.9 0.1 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain YkyA PF10368.9 gi|385805879|ref|YP_005842277.1| - 0.23 11.1 0.1 0.23 11.1 0.1 1.9 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein FaeA PF04703.12 gi|385805880|ref|YP_005842278.1| - 0.03 14.7 0.1 0.15 12.4 0.1 2.1 2 0 0 2 2 2 0 FaeA-like protein DUF4443 PF14544.6 gi|385805880|ref|YP_005842278.1| - 0.071 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) Fungal_TACC PF12709.7 gi|385805881|ref|YP_005842279.1| - 0.026 15.0 0.3 0.037 14.5 0.3 1.4 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins DFP PF04127.15 gi|385805882|ref|YP_005842280.1| - 3.9e-59 199.6 0.4 1.2e-56 191.5 0.1 2.3 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|385805882|ref|YP_005842280.1| - 4.3e-38 130.5 1.0 5.1e-37 127.1 0.1 2.3 2 0 0 2 2 2 1 Flavoprotein PPS_PS PF02006.16 gi|385805884|ref|YP_005842282.1| - 5.1e-73 244.4 1.4 6.9e-73 243.9 1.4 1.2 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF4881 PF16222.5 gi|385805884|ref|YP_005842282.1| - 0.082 12.7 0.2 1.7 8.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4881) Met_10 PF02475.16 gi|385805884|ref|YP_005842282.1| - 0.11 12.3 0.9 0.52 10.0 0.2 2.3 2 1 0 2 2 2 0 Met-10+ like-protein Rubrerythrin PF02915.17 gi|385805885|ref|YP_005842283.1| - 1e-27 97.2 4.0 1.4e-27 96.8 4.0 1.2 1 0 0 1 1 1 1 Rubrerythrin Cys_rich_CPCC PF14206.6 gi|385805885|ref|YP_005842283.1| - 0.023 14.5 1.4 0.043 13.6 1.4 1.5 1 0 0 1 1 1 0 Cysteine-rich CPCC HypA PF01155.19 gi|385805885|ref|YP_005842283.1| - 0.023 14.7 0.5 0.07 13.2 0.3 1.9 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|385805885|ref|YP_005842283.1| - 0.024 14.2 2.6 0.66 9.5 2.4 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Ferritin_2 PF13668.6 gi|385805885|ref|YP_005842283.1| - 0.029 14.6 0.2 0.75 10.0 0.0 2.2 2 0 0 2 2 2 0 Ferritin-like domain DUF3039 PF11238.8 gi|385805885|ref|YP_005842283.1| - 0.039 13.7 1.0 0.085 12.6 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Rubredoxin PF00301.20 gi|385805885|ref|YP_005842283.1| - 0.045 13.8 6.0 2.7 8.1 0.2 2.4 1 1 1 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|385805885|ref|YP_005842283.1| - 0.047 13.1 2.1 2.7 7.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ferritin PF00210.24 gi|385805885|ref|YP_005842283.1| - 0.052 13.5 3.2 0.46 10.4 3.2 2.0 1 1 0 1 1 1 0 Ferritin-like domain NRDD PF13597.6 gi|385805885|ref|YP_005842283.1| - 0.057 12.2 0.3 0.092 11.5 0.3 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.11 gi|385805885|ref|YP_005842283.1| - 0.059 13.3 0.4 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 gi|385805885|ref|YP_005842283.1| - 0.06 13.3 0.3 6.7 6.8 0.0 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn-C2H2_12 PF18112.1 gi|385805885|ref|YP_005842283.1| - 0.074 13.5 3.2 2 9.0 0.3 2.7 3 0 0 3 3 2 0 Autophagy receptor zinc finger-C2H2 domain DZR PF12773.7 gi|385805885|ref|YP_005842283.1| - 0.076 13.0 0.2 0.12 12.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Pro_3_hydrox_C PF05373.11 gi|385805885|ref|YP_005842283.1| - 0.12 12.4 0.0 3.8 7.6 0.0 2.2 2 0 0 2 2 2 0 L-proline 3-hydroxylase, C-terminal DNA_ligase_ZBD PF03119.16 gi|385805885|ref|YP_005842283.1| - 0.14 12.2 2.7 10 6.2 0.1 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3797 PF12677.7 gi|385805885|ref|YP_005842283.1| - 0.33 10.9 2.3 0.81 9.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.6 gi|385805885|ref|YP_005842283.1| - 0.37 10.6 3.5 0.98 9.2 3.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385805885|ref|YP_005842283.1| - 1.1 9.4 5.0 5.5 7.2 5.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|385805885|ref|YP_005842283.1| - 2.3 8.0 7.1 1.7 8.4 0.4 2.3 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Auto_anti-p27 PF06677.12 gi|385805886|ref|YP_005842284.1| - 9.7e-14 51.2 0.2 1.8e-13 50.4 0.2 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|385805886|ref|YP_005842284.1| - 0.0043 16.5 0.1 0.0096 15.4 0.1 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|385805886|ref|YP_005842284.1| - 0.009 16.0 0.1 0.019 15.0 0.1 1.7 1 1 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|385805886|ref|YP_005842284.1| - 0.016 14.6 1.9 0.043 13.2 1.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF2043 PF09740.9 gi|385805886|ref|YP_005842284.1| - 0.12 13.1 1.0 0.25 12.1 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2043) DUF723 PF05265.13 gi|385805886|ref|YP_005842284.1| - 0.14 12.1 0.2 0.77 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF723) Radical_SAM PF04055.21 gi|385805887|ref|YP_005842285.1| - 1e-21 78.0 0.0 1e-21 78.0 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|385805887|ref|YP_005842285.1| - 2.4e-09 37.3 0.9 8.6e-09 35.6 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|385805887|ref|YP_005842285.1| - 1e-06 29.1 0.3 2.5e-06 27.8 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain zf-CHC2 PF01807.20 gi|385805887|ref|YP_005842285.1| - 0.021 14.6 0.6 3.1 7.7 0.3 2.6 2 0 0 2 2 2 0 CHC2 zinc finger THUMP PF02926.17 gi|385805888|ref|YP_005842286.1| - 6.4e-07 29.6 5.4 1.1e-05 25.6 5.4 2.1 1 1 0 1 1 1 1 THUMP domain Ribosomal_S19e PF01090.19 gi|385805888|ref|YP_005842286.1| - 0.037 13.7 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e PGM_PMM_I PF02878.16 gi|385805889|ref|YP_005842287.1| - 1.4e-37 128.5 0.1 4.2e-37 126.9 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|385805889|ref|YP_005842287.1| - 3.6e-21 75.7 0.0 8.7e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|385805889|ref|YP_005842287.1| - 5.2e-12 45.8 0.0 1.5e-11 44.3 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|385805889|ref|YP_005842287.1| - 0.00012 22.2 0.0 0.00033 20.8 0.0 1.8 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AIRS_C PF02769.22 gi|385805891|ref|YP_005842289.1| - 7.1e-21 75.0 0.0 9.9e-21 74.5 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|385805891|ref|YP_005842289.1| - 4.1e-16 59.4 0.1 8.5e-16 58.4 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain SIS PF01380.22 gi|385805892|ref|YP_005842290.1| - 2.1e-17 63.2 0.1 3.5e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|385805892|ref|YP_005842290.1| - 8.1e-13 48.6 0.8 6.9e-08 32.6 0.5 2.2 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|385805892|ref|YP_005842290.1| - 0.00034 20.5 1.5 0.39 10.5 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase DUF2855 PF11017.8 gi|385805892|ref|YP_005842290.1| - 0.071 12.9 0.0 0.086 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) LigB PF02900.18 gi|385805892|ref|YP_005842290.1| - 0.13 11.3 0.1 1 8.4 0.0 2.1 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase VHS PF00790.19 gi|385805893|ref|YP_005842291.1| - 0.064 13.1 2.1 2.4 8.0 2.1 2.1 1 1 0 1 1 1 0 VHS domain DUF4497 PF14924.6 gi|385805893|ref|YP_005842291.1| - 0.067 13.7 0.2 0.085 13.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4497) 2-Hacid_dh_C PF02826.19 gi|385805894|ref|YP_005842292.1| - 1.1e-69 233.3 0.0 1.5e-69 232.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|385805894|ref|YP_005842292.1| - 8.1e-39 132.3 0.0 9.4e-39 132.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|385805894|ref|YP_005842292.1| - 2.4e-05 24.6 0.0 3.9e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|385805894|ref|YP_005842292.1| - 0.001 18.4 0.0 0.0051 16.1 0.0 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Gp_dh_N PF00044.24 gi|385805894|ref|YP_005842292.1| - 0.02 15.2 0.0 0.04 14.3 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|385805894|ref|YP_005842292.1| - 0.023 14.8 0.0 0.098 12.7 0.0 2.0 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|385805894|ref|YP_005842292.1| - 0.03 13.9 0.1 0.074 12.6 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|385805894|ref|YP_005842292.1| - 0.032 14.1 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lipocalin_7 PF14651.6 gi|385805894|ref|YP_005842292.1| - 0.04 13.8 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 Lipocalin / cytosolic fatty-acid binding protein family NAD_binding_7 PF13241.6 gi|385805894|ref|YP_005842292.1| - 0.067 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|385805894|ref|YP_005842292.1| - 0.11 13.0 0.3 0.35 11.5 0.2 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Cdc6_C PF09079.11 gi|385805895|ref|YP_005842293.1| - 5.2e-20 71.2 0.6 1.7e-19 69.5 0.4 2.0 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|385805895|ref|YP_005842293.1| - 9.5e-13 48.6 0.8 5.4e-12 46.2 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_16 PF13191.6 gi|385805895|ref|YP_005842293.1| - 2.6e-12 47.5 0.3 3.5e-09 37.3 0.0 2.9 2 1 1 3 3 2 2 AAA ATPase domain AAA PF00004.29 gi|385805895|ref|YP_005842293.1| - 2.6e-10 40.8 0.5 2.7e-09 37.6 0.2 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|385805895|ref|YP_005842293.1| - 2.5e-09 36.8 0.1 2.9e-08 33.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial TniB protein DUF815 PF05673.13 gi|385805895|ref|YP_005842293.1| - 0.00011 21.5 0.1 0.0011 18.2 0.0 2.4 2 1 1 3 3 3 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|385805895|ref|YP_005842293.1| - 0.00014 21.9 1.4 0.00014 21.9 1.4 2.7 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|385805895|ref|YP_005842293.1| - 0.00025 20.0 0.5 0.27 10.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|385805895|ref|YP_005842293.1| - 0.00038 19.7 0.0 0.00075 18.8 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_assoc_2 PF16193.5 gi|385805895|ref|YP_005842293.1| - 0.00051 20.3 0.2 0.0016 18.7 0.2 1.8 1 0 0 1 1 1 1 AAA C-terminal domain PIF1 PF05970.14 gi|385805895|ref|YP_005842293.1| - 0.00053 19.3 0.0 0.00099 18.4 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase KAP_NTPase PF07693.14 gi|385805895|ref|YP_005842293.1| - 0.00066 19.0 0.1 0.1 11.8 0.0 2.4 1 1 1 2 2 2 1 KAP family P-loop domain NACHT PF05729.12 gi|385805895|ref|YP_005842293.1| - 0.009 15.9 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_7 PF12775.7 gi|385805895|ref|YP_005842293.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ResIII PF04851.15 gi|385805895|ref|YP_005842293.1| - 0.016 15.3 0.1 0.048 13.7 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Bac_DnaA PF00308.18 gi|385805895|ref|YP_005842293.1| - 0.016 15.0 0.1 0.55 10.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial dnaA protein T2SSE PF00437.20 gi|385805895|ref|YP_005842293.1| - 0.017 14.2 0.0 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase_C PF13335.6 gi|385805895|ref|YP_005842293.1| - 0.023 15.3 1.3 0.074 13.7 0.8 2.0 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal Zeta_toxin PF06414.12 gi|385805895|ref|YP_005842293.1| - 0.032 13.5 0.0 0.074 12.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TIP49_C PF17856.1 gi|385805895|ref|YP_005842293.1| - 0.035 14.2 0.0 0.1 12.8 0.0 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain TsaE PF02367.17 gi|385805895|ref|YP_005842293.1| - 0.041 13.9 0.3 0.11 12.5 0.0 1.8 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Microtub_bd PF16796.5 gi|385805895|ref|YP_005842293.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Microtubule binding AAA_33 PF13671.6 gi|385805895|ref|YP_005842293.1| - 0.067 13.3 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Kinesin PF00225.23 gi|385805895|ref|YP_005842293.1| - 0.071 12.0 0.0 0.17 10.8 0.0 1.6 1 0 0 1 1 1 0 Kinesin motor domain HTH_54 PF18607.1 gi|385805895|ref|YP_005842293.1| - 0.14 12.3 0.2 16 5.7 0.0 2.4 1 1 1 2 2 2 0 ParA helix turn helix domain DUF99 PF01949.16 gi|385805896|ref|YP_005842294.1| - 3.5e-51 173.2 0.0 4.3e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 AAA_18 PF13238.6 gi|385805897|ref|YP_005842295.1| - 1.1e-23 84.2 0.3 1.4e-23 83.8 0.3 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|385805897|ref|YP_005842295.1| - 1.2e-06 29.0 0.4 4e-06 27.3 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|385805897|ref|YP_005842295.1| - 3.7e-06 27.3 0.0 1.4e-05 25.3 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|385805897|ref|YP_005842295.1| - 4.2e-06 27.1 0.0 4.9e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385805897|ref|YP_005842295.1| - 5.8e-06 26.8 0.1 1.1e-05 25.8 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|385805897|ref|YP_005842295.1| - 8.5e-06 26.0 0.1 0.0025 18.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|385805897|ref|YP_005842295.1| - 2.2e-05 23.9 0.1 0.00031 20.1 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_24 PF13479.6 gi|385805897|ref|YP_005842295.1| - 0.00012 21.9 0.4 0.0002 21.2 0.4 1.4 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|385805897|ref|YP_005842295.1| - 0.00018 22.0 0.0 0.00027 21.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter NTPase_1 PF03266.15 gi|385805897|ref|YP_005842295.1| - 0.00019 21.4 2.0 0.00036 20.5 0.2 2.2 2 1 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|385805897|ref|YP_005842295.1| - 0.00021 21.7 0.0 0.00026 21.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|385805897|ref|YP_005842295.1| - 0.00022 20.6 0.1 0.00022 20.6 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|385805897|ref|YP_005842295.1| - 0.00037 20.3 0.0 0.00054 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|385805897|ref|YP_005842295.1| - 0.00038 20.8 0.1 0.00075 19.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|385805897|ref|YP_005842295.1| - 0.00044 20.3 0.3 0.00065 19.7 0.3 1.8 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|385805897|ref|YP_005842295.1| - 0.00061 19.7 2.8 0.18 11.7 0.1 2.2 1 1 0 2 2 2 2 Deoxynucleoside kinase KAP_NTPase PF07693.14 gi|385805897|ref|YP_005842295.1| - 0.00064 19.1 0.0 0.00067 19.0 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain Thymidylate_kin PF02223.17 gi|385805897|ref|YP_005842295.1| - 0.00072 19.3 2.0 0.31 10.7 0.1 2.4 2 1 0 2 2 2 2 Thymidylate kinase Rad17 PF03215.15 gi|385805897|ref|YP_005842295.1| - 0.00081 19.4 1.2 0.0021 18.0 0.1 2.0 1 1 1 2 2 2 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|385805897|ref|YP_005842295.1| - 0.00095 19.5 0.0 0.0015 18.9 0.0 1.3 1 0 0 1 1 1 1 RNA helicase T2SSE PF00437.20 gi|385805897|ref|YP_005842295.1| - 0.00098 18.3 0.1 0.002 17.3 0.1 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein cobW PF02492.19 gi|385805897|ref|YP_005842295.1| - 0.0014 18.2 0.6 0.0032 17.1 0.5 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.12 gi|385805897|ref|YP_005842295.1| - 0.0019 18.0 0.1 0.0027 17.5 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain SRPRB PF09439.10 gi|385805897|ref|YP_005842295.1| - 0.0021 17.5 1.2 0.13 11.7 0.2 2.2 1 1 1 2 2 2 1 Signal recognition particle receptor beta subunit AAA_5 PF07728.14 gi|385805897|ref|YP_005842295.1| - 0.0021 18.0 0.0 0.0036 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|385805897|ref|YP_005842295.1| - 0.0022 17.6 0.1 0.0035 16.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region KTI12 PF08433.10 gi|385805897|ref|YP_005842295.1| - 0.0025 17.3 0.0 0.0042 16.6 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 FtsK_SpoIIIE PF01580.18 gi|385805897|ref|YP_005842295.1| - 0.0045 16.4 0.4 0.79 9.0 0.2 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family TIP49 PF06068.13 gi|385805897|ref|YP_005842295.1| - 0.01 15.1 1.9 0.012 14.9 1.9 1.1 1 0 0 1 1 1 0 TIP49 P-loop domain NACHT PF05729.12 gi|385805897|ref|YP_005842295.1| - 0.012 15.6 0.1 0.016 15.1 0.1 1.4 1 1 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|385805897|ref|YP_005842295.1| - 0.017 15.0 0.4 0.039 13.8 0.1 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|385805897|ref|YP_005842295.1| - 0.019 15.0 0.4 0.033 14.3 0.4 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Viral_helicase1 PF01443.18 gi|385805897|ref|YP_005842295.1| - 0.02 14.6 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|385805897|ref|YP_005842295.1| - 0.025 14.5 0.0 0.037 13.9 0.0 1.4 1 1 0 1 1 1 0 Adenylylsulphate kinase TrwB_AAD_bind PF10412.9 gi|385805897|ref|YP_005842295.1| - 0.029 13.3 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|385805897|ref|YP_005842295.1| - 0.032 13.2 0.2 0.061 12.3 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB VirE PF05272.11 gi|385805897|ref|YP_005842295.1| - 0.043 13.5 0.2 0.056 13.2 0.2 1.4 1 1 0 1 1 1 0 Virulence-associated protein E AAA_11 PF13086.6 gi|385805897|ref|YP_005842295.1| - 0.078 12.7 0.9 0.12 12.1 0.3 1.6 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|385805897|ref|YP_005842295.1| - 0.086 12.6 0.3 0.16 11.8 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|385805897|ref|YP_005842295.1| - 0.088 12.1 8.0 0.5 9.7 0.8 2.8 1 1 2 3 3 3 0 KaiC Ploopntkinase3 PF18751.1 gi|385805897|ref|YP_005842295.1| - 0.098 12.6 0.0 0.42 10.5 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 Guanylate_kin PF00625.21 gi|385805897|ref|YP_005842295.1| - 0.12 12.0 2.1 7.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase ResIII PF04851.15 gi|385805897|ref|YP_005842295.1| - 0.13 12.3 0.4 0.18 11.8 0.4 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RsgA_GTPase PF03193.16 gi|385805897|ref|YP_005842295.1| - 0.17 11.8 0.8 0.61 10.0 0.0 2.1 2 1 0 2 2 2 0 RsgA GTPase ADK PF00406.22 gi|385805897|ref|YP_005842295.1| - 0.45 10.6 1.9 9.1 6.4 0.0 2.5 2 2 0 2 2 2 0 Adenylate kinase DUF2148 PF09918.9 gi|385805898|ref|YP_005842296.1| - 4.5e-28 97.1 0.9 5.8e-28 96.7 0.9 1.2 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) RibD_C PF01872.17 gi|385805899|ref|YP_005842297.1| - 1.4e-32 113.2 0.0 1.7e-32 112.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Fe-ADH_2 PF13685.6 gi|385805899|ref|YP_005842297.1| - 0.028 14.1 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase Ribosomal_L37e PF01907.19 gi|385805900|ref|YP_005842298.1| - 2.3e-24 85.3 10.5 2.6e-24 85.1 10.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e NOB1_Zn_bind PF08772.11 gi|385805900|ref|YP_005842298.1| - 0.013 15.6 1.3 0.019 15.1 1.3 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 gi|385805900|ref|YP_005842298.1| - 5.3 7.0 9.5 40 4.2 9.5 2.0 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) LSM PF01423.22 gi|385805901|ref|YP_005842299.1| - 1.6e-23 82.2 0.1 1.7e-23 82.1 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|385805901|ref|YP_005842299.1| - 0.0012 18.9 0.0 0.0015 18.6 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|385805901|ref|YP_005842299.1| - 0.0032 17.6 0.1 0.005 17.0 0.1 1.3 1 1 0 1 1 1 1 RimP C-terminal SH3 domain DUF1947 PF09183.10 gi|385805902|ref|YP_005842300.1| - 1.1e-22 80.0 4.4 2e-22 79.2 4.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|385805902|ref|YP_005842300.1| - 3.4e-19 68.6 0.3 4.8e-19 68.1 0.3 1.2 1 0 0 1 1 1 1 PUA domain DUF4789 PF16033.5 gi|385805903|ref|YP_005842301.1| - 0.071 13.6 0.4 0.12 12.9 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4789) Rib_5-P_isom_A PF06026.14 gi|385805904|ref|YP_005842302.1| - 4.3e-52 176.2 0.5 5.7e-52 175.8 0.5 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|385805904|ref|YP_005842302.1| - 3.7e-07 30.2 0.2 0.0014 18.5 0.0 2.1 1 1 1 2 2 2 2 DeoR C terminal sensor domain PA14 PF07691.12 gi|385805904|ref|YP_005842302.1| - 0.0014 18.5 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 PA14 domain Pox_F16 PF04708.12 gi|385805904|ref|YP_005842302.1| - 0.051 13.0 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 Poxvirus F16 protein Sugar-bind PF04198.13 gi|385805904|ref|YP_005842302.1| - 0.067 12.3 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative sugar-binding domain Elf1 PF05129.13 gi|385805905|ref|YP_005842303.1| - 4.5e-18 65.1 0.6 6e-18 64.7 0.6 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Rubredoxin PF00301.20 gi|385805905|ref|YP_005842303.1| - 0.088 12.9 2.4 1 9.4 0.1 3.0 3 0 0 3 3 3 0 Rubredoxin PcrB PF01884.17 gi|385805906|ref|YP_005842304.1| - 7.6e-60 202.2 0.4 8.5e-60 202.0 0.4 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|385805906|ref|YP_005842304.1| - 9.6e-05 21.9 0.2 0.00021 20.8 0.1 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|385805906|ref|YP_005842304.1| - 0.00049 19.2 0.0 0.00085 18.4 0.0 1.3 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|385805906|ref|YP_005842304.1| - 0.0015 18.0 0.3 0.0035 16.8 0.3 1.7 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|385805906|ref|YP_005842304.1| - 0.0052 16.1 0.1 0.014 14.7 0.1 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|385805906|ref|YP_005842304.1| - 0.011 15.0 0.4 0.019 14.2 0.4 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Trp_syntA PF00290.20 gi|385805906|ref|YP_005842304.1| - 0.011 14.6 0.8 0.017 14.0 0.3 1.5 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.19 gi|385805906|ref|YP_005842304.1| - 0.011 15.1 0.4 0.028 13.8 0.0 1.9 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Aldolase PF01081.19 gi|385805906|ref|YP_005842304.1| - 0.014 14.8 0.5 0.041 13.3 0.1 1.8 2 0 0 2 2 2 0 KDPG and KHG aldolase HTH_3 PF01381.22 gi|385805907|ref|YP_005842305.1| - 2.2e-05 24.4 0.1 4e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix Cro PF09048.10 gi|385805907|ref|YP_005842305.1| - 0.00036 20.5 0.1 0.00067 19.6 0.1 1.4 1 0 0 1 1 1 1 Cro HTH_22 PF13309.6 gi|385805907|ref|YP_005842305.1| - 0.00046 20.2 1.1 0.0072 16.4 0.5 3.0 2 1 0 2 2 2 1 HTH domain LacI PF00356.21 gi|385805907|ref|YP_005842305.1| - 0.00075 19.2 0.1 0.0043 16.8 0.0 2.2 2 1 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_11 PF08279.12 gi|385805907|ref|YP_005842305.1| - 0.0049 16.8 1.2 0.069 13.1 0.1 2.7 2 1 0 2 2 2 1 HTH domain HTH_31 PF13560.6 gi|385805907|ref|YP_005842305.1| - 0.0052 17.1 0.0 0.0081 16.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_CII PF05269.11 gi|385805907|ref|YP_005842305.1| - 0.0095 16.1 0.1 0.013 15.7 0.1 1.3 1 0 0 1 1 1 1 Bacteriophage CII protein YdaS_antitoxin PF15943.5 gi|385805907|ref|YP_005842305.1| - 0.017 15.0 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 gi|385805907|ref|YP_005842305.1| - 0.021 14.7 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_10 PF04967.12 gi|385805907|ref|YP_005842305.1| - 0.026 14.3 0.1 0.088 12.6 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_19 PF12844.7 gi|385805907|ref|YP_005842305.1| - 0.032 14.2 0.1 0.1 12.6 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain SWIRM-assoc_1 PF16495.5 gi|385805907|ref|YP_005842305.1| - 0.037 14.0 1.4 0.076 13.0 1.4 1.6 1 0 0 1 1 1 0 SWIRM-associated region 1 HTH_50 PF18024.1 gi|385805907|ref|YP_005842305.1| - 0.041 13.5 0.4 0.15 11.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|385805907|ref|YP_005842305.1| - 0.063 13.2 0.1 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FAA_hydrolase_N PF09298.11 gi|385805907|ref|YP_005842305.1| - 0.068 13.4 0.0 0.24 11.6 0.0 1.8 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal KORA PF16509.5 gi|385805907|ref|YP_005842305.1| - 0.07 13.4 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Glyco_hydro_77 PF02446.17 gi|385805907|ref|YP_005842305.1| - 0.15 10.8 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 4-alpha-glucanotransferase Xan_ur_permease PF00860.20 gi|385805908|ref|YP_005842306.1| - 7.8e-18 64.3 54.1 1.7e-17 63.2 48.8 2.2 2 0 0 2 2 2 2 Permease family N6_N4_Mtase PF01555.18 gi|385805909|ref|YP_005842307.1| - 1.2e-28 100.4 1.9 1.7e-14 54.1 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_11 PF08241.12 gi|385805909|ref|YP_005842307.1| - 2.1e-06 28.3 0.0 0.0034 18.0 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.18 gi|385805909|ref|YP_005842307.1| - 2.6e-06 27.3 0.0 4e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|385805909|ref|YP_005842307.1| - 2.8e-05 24.0 0.0 4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|385805909|ref|YP_005842307.1| - 0.00076 19.1 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|385805909|ref|YP_005842307.1| - 0.0049 17.6 0.0 0.04 14.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|385805909|ref|YP_005842307.1| - 0.0099 15.5 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DUF2286 PF10051.9 gi|385805909|ref|YP_005842307.1| - 0.069 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2286) PadR PF03551.14 gi|385805910|ref|YP_005842308.1| - 4.1e-06 26.7 0.2 6.5e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|385805910|ref|YP_005842308.1| - 0.0044 16.8 0.3 0.013 15.3 0.1 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) DUF3116 PF11313.8 gi|385805910|ref|YP_005842308.1| - 0.0059 16.4 0.2 0.011 15.6 0.2 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) Ribosomal_L23 PF00276.20 gi|385805910|ref|YP_005842308.1| - 0.053 13.9 0.1 0.096 13.1 0.1 1.6 1 1 0 1 1 1 0 Ribosomal protein L23 Inos-1-P_synth PF01658.17 gi|385805911|ref|YP_005842309.1| - 1.3e-28 99.4 0.0 2.4e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|385805911|ref|YP_005842309.1| - 0.0003 20.3 0.0 0.005 16.3 0.0 2.2 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_kinase PF01513.21 gi|385805912|ref|YP_005842310.1| - 1.7e-33 116.0 0.0 2e-33 115.9 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|385805912|ref|YP_005842310.1| - 5.2e-06 26.1 0.0 8.4e-05 22.2 0.0 2.3 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PrpR_N PF06506.11 gi|385805912|ref|YP_005842310.1| - 0.0068 16.0 0.1 0.054 13.1 0.0 2.3 3 0 0 3 3 3 1 Propionate catabolism activator DUF401 PF04165.12 gi|385805913|ref|YP_005842311.1| - 3.8e-49 168.1 35.1 5.2e-49 167.6 35.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF401) Erg28 PF03694.13 gi|385805913|ref|YP_005842311.1| - 0.052 13.9 1.1 0.052 13.9 1.1 2.4 2 0 0 2 2 2 0 Erg28 like protein Radical_SAM PF04055.21 gi|385805914|ref|YP_005842312.1| - 3.8e-09 37.1 0.0 1.2e-08 35.5 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|385805914|ref|YP_005842312.1| - 0.016 15.0 6.1 2.3 7.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Fer4_14 PF13394.6 gi|385805914|ref|YP_005842312.1| - 0.12 12.5 0.5 0.34 11.1 0.2 1.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF5131 PF07505.11 gi|385805914|ref|YP_005842312.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF5131) Nre_N PF04894.12 gi|385805915|ref|YP_005842313.1| - 9.5e-106 353.6 0.1 1.7e-105 352.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|385805915|ref|YP_005842313.1| - 3.7e-34 116.9 0.1 7.1e-34 116.0 0.1 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Peptidase_M24 PF00557.24 gi|385805916|ref|YP_005842314.1| - 2.1e-49 168.0 0.0 2.7e-49 167.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|385805916|ref|YP_005842314.1| - 3.6e-18 66.5 0.0 1.2e-16 61.6 0.0 2.5 2 1 1 3 3 3 1 Creatinase/Prolidase N-terminal domain THUMP PF02926.17 gi|385805916|ref|YP_005842314.1| - 0.015 15.4 0.7 0.27 11.3 0.0 2.4 2 0 0 2 2 2 0 THUMP domain Talin_middle PF09141.10 gi|385805916|ref|YP_005842314.1| - 0.098 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Talin, middle domain DNA_pol_B PF00136.21 gi|385805917|ref|YP_005842315.1| - 1.8e-51 175.3 2.8 3.6e-51 174.3 2.8 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|385805917|ref|YP_005842315.1| - 2.3e-34 119.0 6.9 7.1e-34 117.4 6.9 1.8 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|385805917|ref|YP_005842315.1| - 8.1e-09 35.7 0.7 5.5e-08 33.0 0.7 2.4 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|385805917|ref|YP_005842315.1| - 8.7e-06 25.6 0.5 2.3e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB FDX-ACB PF03147.14 gi|385805917|ref|YP_005842315.1| - 0.11 12.9 0.0 0.41 11.1 0.0 2.0 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain LIAS_N PF16881.5 gi|385805917|ref|YP_005842315.1| - 0.39 11.2 3.7 0.18 12.2 0.3 2.2 2 1 0 2 2 2 0 N-terminal domain of lipoyl synthase of Radical_SAM family XhlA PF10779.9 gi|385805917|ref|YP_005842315.1| - 1.6 9.0 4.9 1 9.6 1.1 2.6 2 0 0 2 2 2 0 Haemolysin XhlA AA_permease_2 PF13520.6 gi|385805918|ref|YP_005842316.1| - 1.1e-29 103.5 58.9 1.1e-29 103.5 58.9 1.9 1 1 1 2 2 2 1 Amino acid permease Spore_permease PF03845.13 gi|385805918|ref|YP_005842316.1| - 9.1e-06 24.7 23.8 9.1e-06 24.7 23.8 2.5 2 1 0 2 2 2 1 Spore germination protein Trp_Tyr_perm PF03222.13 gi|385805918|ref|YP_005842316.1| - 0.0025 16.9 35.0 0.0029 16.7 23.7 2.3 2 0 0 2 2 2 2 Tryptophan/tyrosine permease family Peptidase_C15 PF01470.17 gi|385805919|ref|YP_005842317.1| - 2.6e-69 233.4 0.0 3.1e-69 233.2 0.0 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Aminotran_3 PF00202.21 gi|385805920|ref|YP_005842318.1| - 7.9e-98 327.8 0.0 9e-98 327.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Peptidase_M15 PF01427.17 gi|385805921|ref|YP_005842319.1| - 3.4e-24 85.7 0.0 7.1e-24 84.7 0.0 1.5 1 1 0 1 1 1 1 D-ala-D-ala dipeptidase VanY PF02557.17 gi|385805921|ref|YP_005842319.1| - 3.9e-06 26.7 0.3 2.3e-05 24.2 0.3 1.9 1 1 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase Macro PF01661.21 gi|385805922|ref|YP_005842320.1| - 8.8e-38 129.0 0.2 1.1e-37 128.6 0.2 1.1 1 0 0 1 1 1 1 Macro domain Ribonuc_L-PSP PF01042.21 gi|385805923|ref|YP_005842321.1| - 4.9e-32 110.5 0.0 2.8e-31 108.1 0.0 1.8 1 1 0 1 1 1 1 Endoribonuclease L-PSP MFS_1 PF07690.16 gi|385805924|ref|YP_005842322.1| - 2e-47 161.8 96.3 2e-38 132.2 60.0 3.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|385805924|ref|YP_005842322.1| - 1.7e-06 27.2 14.0 1.7e-06 27.2 14.0 3.6 3 1 1 4 4 4 2 Sugar (and other) transporter DUF1749 PF08538.10 gi|385805924|ref|YP_005842322.1| - 0.089 11.9 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1749) Flavin_Reduct PF01613.18 gi|385805925|ref|YP_005842323.1| - 6.3e-08 32.8 0.0 6.3e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain N36 PF11438.8 gi|385805925|ref|YP_005842323.1| - 0.094 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 36-mer N-terminal peptide of the N protein (N36) E1_dh PF00676.20 gi|385805926|ref|YP_005842324.1| - 6.5e-90 301.1 0.0 7.4e-90 300.9 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|385805926|ref|YP_005842324.1| - 2.2e-06 27.6 0.3 1.9e-05 24.5 0.3 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|385805926|ref|YP_005842324.1| - 0.011 15.4 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|385805926|ref|YP_005842324.1| - 0.031 13.5 0.0 0.19 10.9 0.0 1.9 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase SpoVS PF04232.12 gi|385805926|ref|YP_005842324.1| - 0.085 12.6 0.1 0.24 11.2 0.1 1.7 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) FAM25 PF15825.5 gi|385805926|ref|YP_005842324.1| - 0.16 12.3 2.9 0.71 10.2 0.2 2.5 2 0 0 2 2 2 0 FAM25 family Transket_pyr PF02779.24 gi|385805927|ref|YP_005842325.1| - 1.6e-50 171.3 0.0 2.3e-50 170.8 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|385805927|ref|YP_005842325.1| - 1.4e-39 134.7 0.0 3.3e-39 133.6 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|385805927|ref|YP_005842325.1| - 6.1e-07 29.7 0.0 1.6e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II NanE PF04131.14 gi|385805927|ref|YP_005842325.1| - 0.049 12.8 0.2 0.13 11.4 0.0 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DUF4503 PF14951.6 gi|385805927|ref|YP_005842325.1| - 0.19 10.1 0.1 0.3 9.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Aminotran_1_2 PF00155.21 gi|385805929|ref|YP_005842327.1| - 3.8e-51 174.4 0.0 4.5e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|385805929|ref|YP_005842327.1| - 0.0032 16.0 0.0 0.0053 15.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|385805929|ref|YP_005842327.1| - 0.0071 15.3 0.0 0.0096 14.8 0.0 1.2 1 0 0 1 1 1 1 Allinase SspH PF08141.12 gi|385805929|ref|YP_005842327.1| - 0.034 14.3 0.3 1 9.5 0.1 2.4 2 0 0 2 2 2 0 Small acid-soluble spore protein H family DegT_DnrJ_EryC1 PF01041.17 gi|385805929|ref|YP_005842327.1| - 0.18 11.1 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Octopine_DH PF02317.17 gi|385805929|ref|YP_005842327.1| - 0.19 11.8 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Pyr_redox_2 PF07992.14 gi|385805930|ref|YP_005842328.1| - 6e-65 219.4 0.6 8.5e-65 218.9 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|385805930|ref|YP_005842328.1| - 4.8e-21 75.1 0.0 2e-20 73.1 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|385805930|ref|YP_005842328.1| - 2.9e-19 69.4 2.8 2.1e-16 60.2 0.2 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385805930|ref|YP_005842328.1| - 5.8e-16 58.6 6.5 6.2e-15 55.2 6.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385805930|ref|YP_005842328.1| - 1.4e-09 37.2 0.3 0.0013 17.6 0.0 3.1 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.22 gi|385805930|ref|YP_005842328.1| - 3.2e-08 33.1 9.6 4.1e-06 26.1 1.5 4.1 2 2 1 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|385805930|ref|YP_005842328.1| - 2.3e-06 27.1 0.1 0.053 12.8 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|385805930|ref|YP_005842328.1| - 7.1e-06 25.4 1.2 1.5e-05 24.4 0.1 2.1 2 1 1 3 3 3 1 Thi4 family 3HCDH_N PF02737.18 gi|385805930|ref|YP_005842328.1| - 8.5e-06 25.8 2.4 0.019 14.9 0.0 2.6 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|385805930|ref|YP_005842328.1| - 5.1e-05 23.3 1.3 0.12 12.3 0.0 3.8 4 0 0 4 4 4 1 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|385805930|ref|YP_005842328.1| - 6e-05 22.6 0.1 0.00064 19.2 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385805930|ref|YP_005842328.1| - 6.5e-05 22.2 4.0 0.00013 21.2 0.4 2.9 4 0 0 4 4 4 1 FAD binding domain K_oxygenase PF13434.6 gi|385805930|ref|YP_005842328.1| - 0.00035 19.8 0.2 0.012 14.8 0.0 2.4 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|385805930|ref|YP_005842328.1| - 0.00062 19.1 0.1 0.048 12.9 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|385805930|ref|YP_005842328.1| - 0.00078 19.1 8.5 0.13 11.9 1.2 3.9 3 1 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|385805930|ref|YP_005842328.1| - 0.0018 18.5 0.4 0.048 13.9 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|385805930|ref|YP_005842328.1| - 0.0052 17.2 0.2 4.4 7.8 0.0 3.1 2 1 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|385805930|ref|YP_005842328.1| - 0.054 13.1 3.5 3.1 7.3 0.5 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|385805930|ref|YP_005842328.1| - 0.1 12.9 1.4 2.3 8.5 0.1 3.1 3 0 0 3 3 3 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|385805930|ref|YP_005842328.1| - 0.12 11.7 0.1 0.68 9.3 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|385805930|ref|YP_005842328.1| - 0.26 10.3 4.5 19 4.2 0.1 3.6 3 1 1 4 4 4 0 Lycopene cyclase protein Acetyltransf_CG PF14542.6 gi|385805931|ref|YP_005842329.1| - 3.1e-20 72.1 0.0 4.5e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.25 gi|385805931|ref|YP_005842329.1| - 3.1e-05 24.2 0.0 6.9e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385805931|ref|YP_005842329.1| - 0.0025 18.2 0.0 0.0031 17.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385805931|ref|YP_005842329.1| - 0.0089 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|385805931|ref|YP_005842329.1| - 0.012 15.1 0.1 0.019 14.5 0.0 1.4 1 1 0 1 1 1 0 Putative acetyl-transferase AA_kinase PF00696.28 gi|385805932|ref|YP_005842330.1| - 9.7e-30 103.9 0.3 3.3e-29 102.2 0.3 1.7 1 1 0 1 1 1 1 Amino acid kinase family MucBP_2 PF17965.1 gi|385805932|ref|YP_005842330.1| - 0.15 12.7 0.0 27 5.4 0.0 3.2 3 0 0 3 3 3 0 Mucin binding domain DUF4556 PF15094.6 gi|385805932|ref|YP_005842330.1| - 0.17 11.1 0.0 0.35 10.0 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4556) DUF998 PF06197.13 gi|385805933|ref|YP_005842331.1| - 3.2e-16 59.5 10.3 3.8e-16 59.2 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Renin_r PF07850.14 gi|385805933|ref|YP_005842331.1| - 0.54 10.9 0.2 0.54 10.9 0.2 2.8 4 0 0 4 4 4 0 Renin receptor-like protein UPF0139 PF03669.13 gi|385805933|ref|YP_005842331.1| - 0.64 9.9 3.4 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0139) GWT1 PF06423.12 gi|385805934|ref|YP_005842332.1| - 0.05 13.7 1.2 0.049 13.8 1.2 1.0 1 0 0 1 1 1 0 GWT1 DUF872 PF05915.12 gi|385805934|ref|YP_005842332.1| - 7.4 6.8 6.9 19 5.4 2.1 2.1 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3938 PF13074.6 gi|385805936|ref|YP_005842334.1| - 4.5 7.6 13.0 0.64 10.3 8.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3938) dUTPase PF00692.19 gi|385805937|ref|YP_005842335.1| - 4.3e-21 74.9 0.0 7.5e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|385805937|ref|YP_005842335.1| - 9.3e-10 37.8 0.0 1.6e-09 37.0 0.0 1.4 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) NTP_transferase PF00483.23 gi|385805938|ref|YP_005842336.1| - 3e-31 108.9 0.0 3.4e-31 108.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|385805938|ref|YP_005842336.1| - 2.1e-08 34.7 0.0 2.5e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain tRNA-synt_1b PF00579.25 gi|385805939|ref|YP_005842337.1| - 4.6e-42 144.3 0.0 5.8e-42 144.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) TIM PF00121.18 gi|385805942|ref|YP_005842340.1| - 2.3e-11 43.5 0.4 1.1e-07 31.5 0.1 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.14 gi|385805942|ref|YP_005842340.1| - 1e-06 28.3 0.1 1.5e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|385805942|ref|YP_005842340.1| - 1e-05 24.5 0.2 2e-05 23.6 0.2 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|385805942|ref|YP_005842340.1| - 1.9e-05 24.2 0.1 3.5e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|385805942|ref|YP_005842340.1| - 9.1e-05 22.0 0.1 0.00013 21.5 0.1 1.3 1 0 0 1 1 1 1 PcrB family FMN_dh PF01070.18 gi|385805942|ref|YP_005842340.1| - 0.00012 21.2 0.0 0.00019 20.6 0.0 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|385805942|ref|YP_005842340.1| - 0.00017 21.1 0.1 0.00021 20.8 0.1 1.2 1 1 0 1 1 1 1 Nitronate monooxygenase IGPS PF00218.21 gi|385805942|ref|YP_005842340.1| - 0.0034 16.6 0.0 0.0045 16.2 0.0 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|385805942|ref|YP_005842340.1| - 0.021 14.0 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|385805942|ref|YP_005842340.1| - 0.032 13.2 0.5 0.041 12.9 0.1 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|385805942|ref|YP_005842340.1| - 0.06 12.8 0.5 0.14 11.6 0.2 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|385805942|ref|YP_005842340.1| - 0.11 11.8 0.1 0.18 11.1 0.1 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase Aminotran_3 PF00202.21 gi|385805943|ref|YP_005842341.1| - 3.1e-109 365.3 0.0 3.6e-109 365.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DapB_N PF01113.20 gi|385805944|ref|YP_005842342.1| - 4.2e-09 36.6 0.2 8.3e-09 35.6 0.2 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|385805944|ref|YP_005842342.1| - 0.0016 18.7 0.7 0.0086 16.4 0.5 2.3 1 1 1 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385805944|ref|YP_005842342.1| - 0.0017 17.8 0.2 0.0031 16.9 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|385805944|ref|YP_005842342.1| - 0.019 15.6 1.6 0.062 14.0 1.6 2.0 1 0 0 1 1 1 0 PglD N-terminal domain F420_oxidored PF03807.17 gi|385805944|ref|YP_005842342.1| - 0.072 13.7 0.3 0.18 12.4 0.3 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Peptidase_M19 PF01244.21 gi|385805945|ref|YP_005842343.1| - 1.7e-77 260.7 0.0 2e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) AA_permease_2 PF13520.6 gi|385805946|ref|YP_005842344.1| - 2.1e-35 122.4 54.6 2.6e-35 122.1 54.6 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385805946|ref|YP_005842344.1| - 2.4e-26 92.4 49.2 3.2e-26 92.0 49.2 1.1 1 0 0 1 1 1 1 Amino acid permease Peptidase_M55 PF04951.13 gi|385805947|ref|YP_005842345.1| - 8.6e-78 261.4 0.0 9.6e-78 261.2 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Amidinotransf PF02274.17 gi|385805948|ref|YP_005842346.1| - 1.6e-50 172.1 0.3 3.3e-50 171.1 0.3 1.5 1 1 0 1 1 1 1 Amidinotransferase PAD_porph PF04371.15 gi|385805948|ref|YP_005842346.1| - 0.01 15.1 0.2 0.18 11.0 0.2 2.3 1 1 0 1 1 1 0 Porphyromonas-type peptidyl-arginine deiminase OTCace PF00185.24 gi|385805949|ref|YP_005842347.1| - 1e-57 194.6 0.0 1.6e-57 193.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|385805949|ref|YP_005842347.1| - 5.2e-53 179.0 0.0 8.2e-53 178.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Glyco_hydro_101 PF12905.7 gi|385805949|ref|YP_005842347.1| - 0.068 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase NTPase_I-T PF01931.18 gi|385805950|ref|YP_005842348.1| - 9.8e-46 155.5 0.0 1.1e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 AFOR_C PF01314.18 gi|385805951|ref|YP_005842349.1| - 6.8e-104 347.9 0.0 8.3e-104 347.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|385805951|ref|YP_005842349.1| - 5.7e-74 248.3 0.1 8.4e-74 247.7 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain OPT PF03169.15 gi|385805952|ref|YP_005842350.1| - 7.4e-95 318.9 55.5 9.5e-95 318.5 55.5 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein ABC_tran PF00005.27 gi|385805953|ref|YP_005842351.1| - 1.8e-29 103.0 0.0 3.1e-29 102.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385805953|ref|YP_005842351.1| - 1.3e-08 35.1 1.7 0.00084 19.2 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385805953|ref|YP_005842351.1| - 2.3e-06 27.2 0.6 0.034 13.6 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385805953|ref|YP_005842351.1| - 0.0023 18.5 0.5 0.0033 18.0 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385805953|ref|YP_005842351.1| - 0.0038 17.6 0.0 0.0099 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|385805953|ref|YP_005842351.1| - 0.0058 17.1 2.7 0.14 12.6 2.7 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|385805953|ref|YP_005842351.1| - 0.0065 16.4 0.1 0.014 15.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|385805953|ref|YP_005842351.1| - 0.011 16.1 0.1 0.025 14.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|385805953|ref|YP_005842351.1| - 0.013 15.1 0.1 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|385805953|ref|YP_005842351.1| - 0.013 15.4 1.9 0.022 14.7 0.1 2.1 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|385805953|ref|YP_005842351.1| - 0.015 14.0 0.8 1.4 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|385805953|ref|YP_005842351.1| - 0.016 14.1 1.5 0.62 8.8 0.3 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|385805953|ref|YP_005842351.1| - 0.025 14.5 0.4 0.26 11.2 0.1 2.1 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|385805953|ref|YP_005842351.1| - 0.026 14.5 0.8 0.058 13.3 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|385805953|ref|YP_005842351.1| - 0.038 13.2 0.2 0.087 12.0 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain ATP-synt_ab PF00006.25 gi|385805953|ref|YP_005842351.1| - 0.039 13.6 0.1 0.049 13.3 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_14 PF13173.6 gi|385805953|ref|YP_005842351.1| - 0.044 13.8 0.1 0.087 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|385805953|ref|YP_005842351.1| - 0.076 11.8 0.0 0.54 9.0 0.0 1.9 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_29 PF13555.6 gi|385805953|ref|YP_005842351.1| - 0.086 12.6 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|385805953|ref|YP_005842351.1| - 0.15 11.8 0.1 0.53 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|385805953|ref|YP_005842351.1| - 0.16 12.0 0.4 2.3 8.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|385805953|ref|YP_005842351.1| - 0.16 12.3 0.4 0.39 11.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|385805953|ref|YP_005842351.1| - 0.16 11.7 0.1 0.19 11.4 0.1 1.3 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|385805954|ref|YP_005842352.1| - 2.2e-13 50.4 14.2 2.2e-13 50.4 14.2 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Papilloma_E5 PF03025.14 gi|385805954|ref|YP_005842352.1| - 9.1 6.5 20.4 8.8 6.6 4.2 3.6 2 1 1 3 3 3 0 Papillomavirus E5 NMT1_2 PF13379.6 gi|385805955|ref|YP_005842353.1| - 3.4e-09 36.8 0.1 1.1e-08 35.1 0.1 1.7 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.20 gi|385805955|ref|YP_005842353.1| - 1.7e-05 24.3 0.4 7.1e-05 22.3 0.4 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|385805955|ref|YP_005842353.1| - 0.0021 18.0 0.5 0.014 15.3 0.1 2.1 2 1 1 3 3 3 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|385805955|ref|YP_005842353.1| - 0.0034 17.0 0.1 0.0047 16.6 0.1 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|385805955|ref|YP_005842353.1| - 0.02 14.5 0.2 0.042 13.4 0.1 1.6 1 1 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system Phage_holin_5_1 PF06946.11 gi|385805955|ref|YP_005842353.1| - 0.047 14.1 0.0 0.14 12.5 0.0 1.9 1 0 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 HEM4 PF02602.15 gi|385805955|ref|YP_005842353.1| - 0.17 11.2 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Phage_holin_5_2 PF16079.5 gi|385805955|ref|YP_005842353.1| - 0.31 11.4 3.1 0.35 11.2 0.2 2.4 2 1 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V Cdc6_C PF09079.11 gi|385805956|ref|YP_005842354.1| - 0.094 12.7 0.3 24 5.0 0.0 2.7 3 0 0 3 3 3 0 CDC6, C terminal winged helix domain CTP_transf_like PF01467.26 gi|385805957|ref|YP_005842355.1| - 4.9e-13 49.5 0.1 9e-13 48.6 0.1 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|385805957|ref|YP_005842355.1| - 1.7e-05 24.2 0.0 0.0054 16.0 0.0 2.1 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase Citrate_ly_lig PF08218.11 gi|385805957|ref|YP_005842355.1| - 0.0014 18.3 0.1 0.41 10.3 0.0 2.2 1 1 1 2 2 2 2 Citrate lyase ligase C-terminal domain AhpC-TSA PF00578.21 gi|385805959|ref|YP_005842357.1| - 5.2e-34 116.8 0.0 7.7e-34 116.3 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|385805959|ref|YP_005842357.1| - 7.4e-14 51.7 0.0 9.8e-14 51.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|385805959|ref|YP_005842357.1| - 2.6e-09 36.8 0.0 4.4e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.14 gi|385805959|ref|YP_005842357.1| - 0.19 11.7 0.1 0.99 9.3 0.0 2.0 2 0 0 2 2 2 0 SCO1/SenC UDPG_MGDP_dh_N PF03721.14 gi|385805960|ref|YP_005842358.1| - 1.3e-35 122.7 0.3 2.4e-35 121.8 0.3 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|385805960|ref|YP_005842358.1| - 4.1e-22 78.6 0.0 1e-20 74.1 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|385805960|ref|YP_005842358.1| - 7.4e-20 71.0 0.0 2e-19 69.6 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|385805960|ref|YP_005842358.1| - 5.4e-08 33.2 0.0 2.3e-07 31.1 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|385805960|ref|YP_005842358.1| - 2.2e-07 31.0 0.0 6.2e-05 23.0 0.1 3.1 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|385805960|ref|YP_005842358.1| - 0.00019 21.4 0.2 0.00039 20.3 0.2 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|385805960|ref|YP_005842358.1| - 0.0045 16.4 0.0 0.22 10.8 0.1 2.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|385805960|ref|YP_005842358.1| - 0.0047 17.4 0.0 0.8 10.2 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Methyltransf_23 PF13489.6 gi|385805960|ref|YP_005842358.1| - 0.035 14.0 0.0 8.1 6.3 0.0 2.7 3 0 0 3 3 3 0 Methyltransferase domain Mur_ligase PF01225.25 gi|385805960|ref|YP_005842358.1| - 0.053 13.9 0.0 0.32 11.4 0.0 2.4 2 0 0 2 2 2 0 Mur ligase family, catalytic domain F420_oxidored PF03807.17 gi|385805960|ref|YP_005842358.1| - 0.24 12.0 1.5 0.74 10.4 0.2 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UbiD PF01977.16 gi|385805961|ref|YP_005842359.1| - 2.9e-136 454.6 0.0 3.3e-136 454.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiA PF01040.18 gi|385805962|ref|YP_005842360.1| - 1.1e-37 129.7 19.6 1.4e-37 129.4 19.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2208 PF09973.9 gi|385805963|ref|YP_005842361.1| - 6.3e-67 225.6 12.7 7.8e-67 225.3 12.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF4199 PF13858.6 gi|385805963|ref|YP_005842361.1| - 0.022 15.2 6.2 0.022 15.2 6.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) KdpC PF02669.15 gi|385805963|ref|YP_005842361.1| - 0.084 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 K+-transporting ATPase, c chain TrmB PF01978.19 gi|385805964|ref|YP_005842362.1| - 0.0001 22.1 0.7 0.0011 18.9 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|385805964|ref|YP_005842362.1| - 0.0087 15.9 0.6 0.78 9.6 0.1 3.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain (DUF1495) Sigma70_r4 PF04545.16 gi|385805964|ref|YP_005842362.1| - 0.015 14.8 0.3 0.21 11.1 0.0 2.6 2 1 0 2 2 2 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|385805964|ref|YP_005842362.1| - 0.015 15.6 0.2 5.9 7.3 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 gi|385805964|ref|YP_005842362.1| - 0.15 12.6 0.2 0.56 10.7 0.0 2.1 3 0 0 3 3 3 0 Winged helix DNA-binding domain Arch_flagellin PF01917.16 gi|385805966|ref|YP_005842364.1| - 5.3e-33 114.5 9.7 1.2e-32 113.3 9.7 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin Focal_AT PF03623.13 gi|385805967|ref|YP_005842365.1| - 0.00096 19.2 6.2 0.00098 19.1 0.2 2.4 1 1 1 2 2 2 1 Focal adhesion targeting region Spc7 PF08317.11 gi|385805967|ref|YP_005842365.1| - 0.024 13.5 10.5 0.043 12.7 10.5 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein WIYLD PF10440.9 gi|385805967|ref|YP_005842365.1| - 0.061 13.1 0.0 5 7.0 0.0 2.5 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain PhageMin_Tail PF10145.9 gi|385805967|ref|YP_005842365.1| - 0.064 13.1 0.1 2.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Phage-related minor tail protein DUF1664 PF07889.12 gi|385805967|ref|YP_005842365.1| - 0.089 12.8 7.1 0.2 11.7 4.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ALMT PF11744.8 gi|385805967|ref|YP_005842365.1| - 0.11 11.4 5.0 0.12 11.1 5.0 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter zf-NADH-PPase PF09297.11 gi|385805967|ref|YP_005842365.1| - 0.12 12.1 0.3 0.17 11.6 0.3 1.2 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain UPF0242 PF06785.11 gi|385805967|ref|YP_005842365.1| - 0.13 12.4 10.2 0.23 11.6 10.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ATG16 PF08614.11 gi|385805967|ref|YP_005842365.1| - 0.24 11.6 10.9 0.42 10.8 10.9 1.5 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Syntaxin-6_N PF09177.11 gi|385805967|ref|YP_005842365.1| - 0.28 11.8 6.1 0.37 11.4 5.0 1.7 2 0 0 2 2 2 0 Syntaxin 6, N-terminal EspB PF05802.11 gi|385805967|ref|YP_005842365.1| - 0.3 11.0 5.8 0.075 13.0 2.9 1.4 2 0 0 2 2 2 0 Enterobacterial EspB protein Atg14 PF10186.9 gi|385805967|ref|YP_005842365.1| - 0.32 10.0 8.2 0.58 9.2 8.2 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIC PF04977.15 gi|385805967|ref|YP_005842365.1| - 0.44 10.4 6.3 0.56 10.0 1.2 2.9 1 1 1 2 2 2 0 Septum formation initiator DUF2203 PF09969.9 gi|385805967|ref|YP_005842365.1| - 0.71 10.6 7.3 0.49 11.1 3.6 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|385805967|ref|YP_005842365.1| - 4.3 6.5 8.1 6.7 5.9 8.1 1.4 1 0 0 1 1 1 0 TMPIT-like protein Seryl_tRNA_N PF02403.22 gi|385805967|ref|YP_005842365.1| - 5.7 7.2 17.1 7.5 6.8 4.2 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.10 gi|385805967|ref|YP_005842365.1| - 6 7.0 11.9 8.8 6.5 9.4 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Arch_flagellin PF01917.16 gi|385805968|ref|YP_005842366.1| - 3.6e-10 40.3 5.8 4.1e-10 40.1 5.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|385805969|ref|YP_005842367.1| - 0.0092 16.2 2.9 0.011 15.9 2.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4811 PF16069.5 gi|385805969|ref|YP_005842367.1| - 0.22 11.4 3.3 3 7.7 2.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4811) ATPase PF06745.13 gi|385805970|ref|YP_005842368.1| - 1.6e-23 83.3 0.1 2e-23 83.0 0.1 1.1 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.11 gi|385805970|ref|YP_005842368.1| - 1.1e-07 31.4 0.6 9.6e-05 21.7 0.1 2.1 2 0 0 2 2 2 2 PAXNEB protein Rad51 PF08423.11 gi|385805970|ref|YP_005842368.1| - 0.0018 17.6 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|385805970|ref|YP_005842368.1| - 0.16 11.5 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|385805971|ref|YP_005842369.1| - 1.6e-40 138.9 0.0 1.1e-35 123.1 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|385805971|ref|YP_005842369.1| - 4.1e-18 65.6 0.0 1e-17 64.4 0.0 1.7 1 0 0 1 1 1 1 Intein splicing domain AAA_29 PF13555.6 gi|385805971|ref|YP_005842369.1| - 1.5e-05 24.6 0.1 3.5e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Hint PF01079.20 gi|385805971|ref|YP_005842369.1| - 0.0079 15.7 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Hint module ABC_tran PF00005.27 gi|385805971|ref|YP_005842369.1| - 0.056 14.0 0.0 0.18 12.3 0.0 1.8 2 0 0 2 2 2 0 ABC transporter Zeta_toxin PF06414.12 gi|385805971|ref|YP_005842369.1| - 0.078 12.2 0.0 2.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.6 gi|385805971|ref|YP_005842369.1| - 0.085 13.1 0.0 0.5 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain T2SSF PF00482.23 gi|385805972|ref|YP_005842370.1| - 2.7e-12 46.7 0.3 1.5e-06 28.2 0.0 3.9 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F tRNA-synt_1g PF09334.11 gi|385805973|ref|YP_005842371.1| - 1.4e-152 508.0 0.0 1.7e-152 507.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|385805973|ref|YP_005842371.1| - 6.5e-14 51.1 0.8 2.5e-05 22.8 0.0 4.0 2 2 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|385805973|ref|YP_005842371.1| - 8.9e-05 22.5 0.0 0.00017 21.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.7 gi|385805973|ref|YP_005842371.1| - 0.036 14.1 1.9 0.073 13.1 1.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon tRNA-synt_1f PF01921.18 gi|385805973|ref|YP_005842371.1| - 0.042 12.8 0.0 0.082 11.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (K) zf-C2HC5 PF06221.13 gi|385805973|ref|YP_005842371.1| - 0.072 13.1 3.4 0.076 13.0 0.5 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.6 gi|385805973|ref|YP_005842371.1| - 3.4 7.2 11.3 11 5.6 1.5 3.2 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|385805973|ref|YP_005842371.1| - 3.7 7.4 7.5 5.1 6.9 0.7 2.7 2 1 0 2 2 2 0 zinc-ribbon domain Fer4 PF00037.27 gi|385805974|ref|YP_005842372.1| - 1.5e-13 49.9 15.8 1.1e-07 31.3 5.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385805974|ref|YP_005842372.1| - 6.8e-09 35.4 15.7 1.9e-05 24.5 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|385805974|ref|YP_005842372.1| - 7e-09 36.5 4.7 0.00015 22.6 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|385805974|ref|YP_005842372.1| - 2.7e-08 33.8 6.2 4.5e-05 23.5 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385805974|ref|YP_005842372.1| - 3.9e-08 33.8 22.3 3e-06 27.7 12.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385805974|ref|YP_005842372.1| - 3.9e-08 33.3 9.4 7.2e-08 32.4 9.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385805974|ref|YP_005842372.1| - 2.3e-07 30.5 13.2 0.00012 22.0 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385805974|ref|YP_005842372.1| - 4e-06 27.2 1.4 0.055 13.9 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385805974|ref|YP_005842372.1| - 5.5e-06 26.5 12.6 0.002 18.5 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385805974|ref|YP_005842372.1| - 2.2e-05 24.9 4.0 0.044 14.3 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385805974|ref|YP_005842372.1| - 2.5e-05 24.3 11.1 9.7e-05 22.5 11.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385805974|ref|YP_005842372.1| - 0.0027 18.4 6.5 0.043 14.6 0.3 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|385805974|ref|YP_005842372.1| - 0.043 14.4 11.8 0.8 10.3 1.2 2.7 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|385805974|ref|YP_005842372.1| - 0.055 13.5 0.1 0.15 12.1 0.1 1.7 1 1 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_3 PF12798.7 gi|385805974|ref|YP_005842372.1| - 8.6 7.6 17.3 6.4 8.0 6.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|385805975|ref|YP_005842373.1| - 3.7e-46 157.7 0.5 4.9e-46 157.3 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|385805975|ref|YP_005842373.1| - 3.3e-22 78.7 0.0 6.4e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|385805975|ref|YP_005842373.1| - 0.0016 18.3 0.0 0.013 15.4 0.0 2.5 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|385805976|ref|YP_005842374.1| - 2.8e-20 72.7 0.1 4.1e-20 72.1 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PBC PF03792.13 gi|385805976|ref|YP_005842374.1| - 0.028 14.2 0.0 0.04 13.7 0.0 1.1 1 0 0 1 1 1 0 PBC domain Aminotran_1_2 PF00155.21 gi|385805977|ref|YP_005842375.1| - 2.6e-42 145.3 0.0 2.9e-42 145.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|385805977|ref|YP_005842375.1| - 1.2e-10 40.8 0.0 2.2e-10 39.9 0.0 1.3 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase tRNA-synt_2 PF00152.20 gi|385805978|ref|YP_005842376.1| - 1.5e-69 234.5 0.0 2e-69 234.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|385805978|ref|YP_005842376.1| - 3.1e-16 59.1 0.0 1.1e-15 57.4 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Rho_N PF07498.12 gi|385805978|ref|YP_005842376.1| - 9.9e-05 22.2 0.2 0.00032 20.6 0.2 1.9 1 0 0 1 1 1 1 Rho termination factor, N-terminal domain tRNA-synt_2d PF01409.20 gi|385805978|ref|YP_005842376.1| - 0.0045 16.5 0.0 0.017 14.6 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_anti_2 PF13742.6 gi|385805978|ref|YP_005842376.1| - 0.012 15.8 0.0 0.021 15.0 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA-synt_2b PF00587.25 gi|385805979|ref|YP_005842377.1| - 2.8e-27 95.8 0.1 7.7e-27 94.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|385805979|ref|YP_005842377.1| - 2e-18 66.3 1.0 5.1e-18 65.0 1.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|385805979|ref|YP_005842377.1| - 3.8e-12 46.2 0.1 1.2e-11 44.7 0.1 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal SpoIIP PF07454.11 gi|385805979|ref|YP_005842377.1| - 0.21 11.0 1.5 2.7 7.4 0.0 2.5 3 0 0 3 3 3 0 Stage II sporulation protein P (SpoIIP) Ribosomal_L24e PF01246.20 gi|385805980|ref|YP_005842378.1| - 0.0004 20.6 0.4 0.00071 19.7 0.4 1.4 1 0 0 1 1 1 1 Ribosomal protein L24e DUF971 PF06155.12 gi|385805980|ref|YP_005842378.1| - 0.012 16.2 0.1 0.018 15.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF971) VIT1 PF01988.19 gi|385805981|ref|YP_005842379.1| - 3.4e-08 33.6 17.5 4.1e-06 26.8 2.5 3.0 2 2 1 3 3 3 2 VIT family Rubrerythrin PF02915.17 gi|385805981|ref|YP_005842379.1| - 1.8e-07 31.6 11.0 5.5e-07 30.1 11.0 1.7 1 1 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|385805981|ref|YP_005842379.1| - 0.00043 20.5 1.4 0.03 14.5 0.0 2.6 2 1 0 2 2 2 1 Ferritin-like domain CbtA PF09490.10 gi|385805981|ref|YP_005842379.1| - 0.012 15.4 3.4 0.021 14.6 0.3 2.2 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtA) FA_desaturase_2 PF03405.14 gi|385805981|ref|YP_005842379.1| - 0.025 13.4 0.2 0.047 12.5 0.2 1.4 1 1 0 1 1 1 0 Fatty acid desaturase DUF455 PF04305.14 gi|385805981|ref|YP_005842379.1| - 0.071 12.6 0.9 0.18 11.3 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF455) Presenilin PF01080.17 gi|385805981|ref|YP_005842379.1| - 0.085 11.6 3.9 0.16 10.7 3.9 1.5 1 0 0 1 1 1 0 Presenilin 7TMR-DISM_7TM PF07695.11 gi|385805981|ref|YP_005842379.1| - 0.51 10.2 11.8 0.7 9.8 8.1 2.1 2 0 0 2 2 2 0 7TM diverse intracellular signalling E1-E2_ATPase PF00122.20 gi|385805981|ref|YP_005842379.1| - 0.55 9.7 5.7 0.28 10.7 0.1 2.2 1 1 2 3 3 3 0 E1-E2 ATPase Glyco_trans_1_4 PF13692.6 gi|385805982|ref|YP_005842380.1| - 7.6e-15 55.5 0.0 1.2e-14 54.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|385805982|ref|YP_005842380.1| - 1e-13 51.2 0.1 2.5e-13 49.9 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|385805982|ref|YP_005842380.1| - 0.0023 18.3 0.0 0.0046 17.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|385805982|ref|YP_005842380.1| - 0.031 14.3 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 ALG11_N PF15924.5 gi|385805982|ref|YP_005842380.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 ALG11 mannosyltransferase N-terminus Epimerase_2 PF02350.19 gi|385805982|ref|YP_005842380.1| - 0.21 10.4 0.0 0.33 9.7 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase CBS PF00571.28 gi|385805983|ref|YP_005842381.1| - 1.9e-05 25.0 0.1 2.2e-05 24.8 0.1 1.0 1 0 0 1 1 1 1 CBS domain DUF3094 PF11293.8 gi|385805986|ref|YP_005842384.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) eRF1_2 PF03464.15 gi|385805987|ref|YP_005842385.1| - 6.4e-40 136.6 0.0 1.1e-39 135.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|385805987|ref|YP_005842385.1| - 3.6e-18 66.1 0.2 2.2e-16 60.4 0.1 2.8 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|385805987|ref|YP_005842385.1| - 2.7e-16 60.0 0.0 5.6e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|385805987|ref|YP_005842385.1| - 1.3e-13 51.4 0.0 2.2e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|385805987|ref|YP_005842385.1| - 9.2e-06 25.7 0.0 1.8e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 LIDHydrolase PF10230.9 gi|385805987|ref|YP_005842385.1| - 0.017 14.7 0.0 0.033 13.7 0.0 1.6 1 1 0 1 1 1 0 Lipid-droplet associated hydrolase TFIIB PF00382.19 gi|385805988|ref|YP_005842386.1| - 3e-34 116.9 4.6 4.6e-17 61.8 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385805988|ref|YP_005842386.1| - 1.4e-08 34.1 0.0 2.6e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|385805988|ref|YP_005842386.1| - 5.9e-05 22.5 0.1 0.00021 20.8 0.1 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|385805988|ref|YP_005842386.1| - 9.7e-05 21.7 0.2 0.0038 16.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Cyclin_C PF02984.19 gi|385805988|ref|YP_005842386.1| - 0.00036 20.6 0.0 1.1 9.4 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain RB_B PF01857.20 gi|385805988|ref|YP_005842386.1| - 0.00046 20.2 0.8 0.00099 19.1 0.4 1.7 2 0 0 2 2 2 1 Retinoblastoma-associated protein B domain HTH_AsnC-type PF13404.6 gi|385805988|ref|YP_005842386.1| - 0.0013 18.5 0.0 0.0049 16.7 0.0 2.1 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Cyclin_N PF00134.23 gi|385805988|ref|YP_005842386.1| - 0.0019 17.9 0.5 0.036 13.8 0.3 2.1 2 0 0 2 2 2 1 Cyclin, N-terminal domain HTH_24 PF13412.6 gi|385805988|ref|YP_005842386.1| - 0.0095 15.5 0.5 0.027 14.0 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|385805988|ref|YP_005842386.1| - 0.019 14.6 0.0 0.073 12.8 0.0 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 IL8 PF00048.20 gi|385805988|ref|YP_005842386.1| - 0.025 14.7 0.1 0.064 13.4 0.1 1.7 1 0 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like HTH_11 PF08279.12 gi|385805988|ref|YP_005842386.1| - 0.048 13.6 0.2 0.12 12.3 0.2 1.7 1 0 0 1 1 1 0 HTH domain UPF0253 PF06786.12 gi|385805988|ref|YP_005842386.1| - 0.054 13.8 1.5 0.11 12.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) HxlR PF01638.17 gi|385805988|ref|YP_005842386.1| - 0.12 12.3 0.2 18 5.2 0.0 3.0 3 0 0 3 3 3 0 HxlR-like helix-turn-helix TFIIB_C_1 PF18542.1 gi|385805988|ref|YP_005842386.1| - 0.26 11.3 4.5 0.91 9.6 1.2 2.3 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 SUI1 PF01253.22 gi|385805989|ref|YP_005842387.1| - 2.8e-21 75.8 1.5 3.7e-21 75.4 1.5 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|385805989|ref|YP_005842387.1| - 0.0034 17.6 0.8 0.0047 17.2 0.8 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) ExbD PF02472.16 gi|385805989|ref|YP_005842387.1| - 0.014 15.6 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Biopolymer transport protein ExbD/TolR E3_binding PF02817.17 gi|385805989|ref|YP_005842387.1| - 0.15 12.5 0.3 0.33 11.3 0.1 1.8 2 0 0 2 2 2 0 e3 binding domain ATP-synt_C PF00137.21 gi|385805990|ref|YP_005842388.1| - 1.5e-15 57.2 18.3 1.5e-15 57.2 18.3 1.9 2 1 0 2 2 2 1 ATP synthase subunit C Telomere_reg-2 PF10193.9 gi|385805991|ref|YP_005842389.1| - 0.094 13.2 0.1 0.13 12.7 0.1 1.3 1 0 0 1 1 1 0 Telomere length regulation protein ATP-synt_D PF01813.17 gi|385805992|ref|YP_005842390.1| - 5.6e-42 143.8 9.1 6.3e-42 143.6 9.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.25 gi|385805993|ref|YP_005842391.1| - 7.1e-66 221.9 0.0 9.6e-66 221.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|385805993|ref|YP_005842391.1| - 7.3e-12 45.6 1.2 1.5e-11 44.6 1.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|385805993|ref|YP_005842391.1| - 2.2e-05 24.5 0.5 0.00014 22.0 0.5 2.1 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|385805994|ref|YP_005842392.1| - 2.5e-90 301.8 0.0 3.5e-90 301.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|385805994|ref|YP_005842392.1| - 1.7e-45 153.8 0.0 3e-45 153.0 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|385805994|ref|YP_005842392.1| - 7.8e-09 35.9 2.3 1.8e-08 34.7 0.9 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_30 PF13604.6 gi|385805994|ref|YP_005842392.1| - 0.00088 19.0 0.2 1.8 8.3 0.1 3.2 2 1 0 3 3 3 2 AAA domain Peptidase_M23 PF01551.22 gi|385805994|ref|YP_005842392.1| - 0.094 12.9 0.1 15 5.9 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 FliH PF02108.16 gi|385805995|ref|YP_005842393.1| - 0.00015 21.8 1.8 0.00035 20.6 1.8 1.7 1 1 0 1 1 1 1 Flagellar assembly protein FliH vATP-synt_E PF01991.18 gi|385805995|ref|YP_005842393.1| - 0.00084 18.8 16.3 0.017 14.5 16.3 2.4 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Vac14_Fab1_bd PF12755.7 gi|385805995|ref|YP_005842393.1| - 0.0056 17.2 3.9 0.0068 17.0 0.8 2.4 1 1 1 2 2 2 1 Vacuolar 14 Fab1-binding region DUF1804 PF08822.11 gi|385805995|ref|YP_005842393.1| - 0.0068 16.4 0.8 0.01 15.8 0.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1804) HBM PF16591.5 gi|385805995|ref|YP_005842393.1| - 0.042 13.3 1.6 0.056 12.9 1.6 1.1 1 0 0 1 1 1 0 Helical bimodular sensor domain Whirly PF08536.11 gi|385805995|ref|YP_005842393.1| - 0.056 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Whirly transcription factor Peptidase_S49 PF01343.18 gi|385805995|ref|YP_005842393.1| - 0.061 13.3 0.2 0.16 11.9 0.2 1.7 1 1 1 2 2 2 0 Peptidase family S49 CorA PF01544.18 gi|385805995|ref|YP_005842393.1| - 0.13 11.5 8.4 0.051 12.9 5.2 1.8 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Imm42 PF15593.6 gi|385805995|ref|YP_005842393.1| - 4.9 7.6 12.4 3 8.3 9.4 2.0 1 1 2 3 3 3 0 Immunity protein 42 DASH_Dad4 PF08650.10 gi|385805995|ref|YP_005842393.1| - 5.6 7.0 7.4 4 7.5 1.4 3.1 2 2 1 3 3 3 0 DASH complex subunit Dad4 Z1 PF10593.9 gi|385805995|ref|YP_005842393.1| - 5.9 6.3 9.2 18 4.7 9.3 1.7 1 1 0 1 1 1 0 Z1 domain YtxH PF12732.7 gi|385805995|ref|YP_005842393.1| - 8.9 6.9 11.1 1.2e+03 0.1 11.0 3.0 1 1 0 1 1 1 0 YtxH-like protein ATP-synt_F PF01990.17 gi|385805996|ref|YP_005842394.1| - 8.9e-09 35.6 0.4 1e-08 35.3 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit GnsAB_toxin PF08178.11 gi|385805996|ref|YP_005842394.1| - 0.044 13.7 1.2 0.052 13.5 0.3 1.6 2 0 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system IF-2 PF11987.8 gi|385805996|ref|YP_005842394.1| - 0.064 13.4 0.0 0.072 13.2 0.0 1.1 1 0 0 1 1 1 0 Translation-initiation factor 2 V_ATPase_I PF01496.19 gi|385805997|ref|YP_005842395.1| - 7.5e-36 123.4 19.2 1.9e-24 85.7 0.8 3.2 3 1 1 4 4 4 2 V-type ATPase 116kDa subunit family SPATA24 PF15175.6 gi|385805997|ref|YP_005842395.1| - 0.017 15.1 0.4 0.041 13.8 0.4 1.6 1 0 0 1 1 1 0 Spermatogenesis-associated protein 24 Med2 PF11214.8 gi|385805997|ref|YP_005842395.1| - 0.024 14.8 0.1 12 6.2 0.1 2.5 2 0 0 2 2 2 0 Mediator complex subunit 2 ABC_tran_CTD PF16326.5 gi|385805997|ref|YP_005842395.1| - 0.03 14.6 1.4 0.03 14.6 1.4 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain BLOC1_2 PF10046.9 gi|385805997|ref|YP_005842395.1| - 0.036 14.4 2.7 1.2 9.5 0.3 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PI3K_P85_iSH2 PF16454.5 gi|385805997|ref|YP_005842395.1| - 0.1 12.2 5.8 0.085 12.5 1.2 2.4 2 1 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2203 PF09969.9 gi|385805997|ref|YP_005842395.1| - 0.16 12.7 0.8 22 5.8 0.2 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF4795 PF16043.5 gi|385805997|ref|YP_005842395.1| - 0.2 11.2 1.6 0.66 9.5 1.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF1192 PF06698.11 gi|385805997|ref|YP_005842395.1| - 0.21 11.7 2.9 2.5 8.2 0.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Tli4_N PF18443.1 gi|385805997|ref|YP_005842395.1| - 0.22 11.9 1.5 1.9 8.9 0.0 2.3 2 0 0 2 2 2 0 Tle cognate immunity protein 4 N-terminal domain Prefoldin_2 PF01920.20 gi|385805997|ref|YP_005842395.1| - 0.29 11.1 8.0 5.2 7.1 2.9 2.4 2 0 0 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|385805997|ref|YP_005842395.1| - 0.6 10.1 6.3 7.5 6.6 0.4 2.4 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.11 gi|385805997|ref|YP_005842395.1| - 0.64 10.5 5.0 5.1 7.6 0.1 3.4 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Tektin PF03148.14 gi|385805997|ref|YP_005842395.1| - 1.1 7.9 3.6 0.41 9.3 0.3 1.8 2 0 0 2 2 2 0 Tektin family ZapB PF06005.12 gi|385805997|ref|YP_005842395.1| - 1.7 9.2 5.9 7.7 7.0 0.7 2.5 2 0 0 2 2 2 0 Cell division protein ZapB TelA PF05816.11 gi|385805997|ref|YP_005842395.1| - 2.4 7.1 6.4 3.2 6.7 0.2 2.1 2 0 0 2 2 2 0 Toxic anion resistance protein (TelA) Seryl_tRNA_N PF02403.22 gi|385805997|ref|YP_005842395.1| - 2.5 8.3 6.2 6 7.1 0.2 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|385805997|ref|YP_005842395.1| - 3.4 8.2 6.0 12 6.5 0.2 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region Swi5 PF07061.11 gi|385805997|ref|YP_005842395.1| - 4.4 7.5 5.5 11 6.2 0.7 2.5 2 0 0 2 2 2 0 Swi5 Snf7 PF03357.21 gi|385805997|ref|YP_005842395.1| - 9.9 5.7 7.7 0.96 9.0 2.0 2.0 2 0 0 2 2 2 0 Snf7 NERD PF08378.11 gi|385805998|ref|YP_005842396.1| - 2.6e-07 31.1 0.0 5.1e-07 30.1 0.0 1.6 1 1 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 gi|385805998|ref|YP_005842396.1| - 3.6e-05 23.7 0.0 6.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|385805998|ref|YP_005842396.1| - 6.8e-05 23.0 0.1 0.00013 22.1 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 Hjc PF01870.18 gi|385805998|ref|YP_005842396.1| - 0.0001 22.2 0.0 0.00019 21.4 0.0 1.6 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) MTES_1575 PF18741.1 gi|385805998|ref|YP_005842396.1| - 0.012 15.8 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 REase_MTES_1575 Thy1 PF02511.15 gi|385805999|ref|YP_005842397.1| - 3.3e-67 225.9 2.1 5.2e-67 225.3 2.1 1.3 1 0 0 1 1 1 1 Thymidylate synthase complementing protein LPD11 PF18824.1 gi|385805999|ref|YP_005842397.1| - 0.044 13.9 0.7 0.15 12.2 0.7 1.9 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 11 DUF600 PF04634.12 gi|385805999|ref|YP_005842397.1| - 0.059 13.4 8.6 0.21 11.6 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF600 DUF4358 PF14270.6 gi|385805999|ref|YP_005842397.1| - 0.22 11.8 6.3 2.2 8.6 0.3 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4358) DUF3106 PF11304.8 gi|385805999|ref|YP_005842397.1| - 0.82 10.2 6.5 1.1 9.8 4.3 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3106) NikR_C PF08753.11 gi|385806000|ref|YP_005842398.1| - 4.2e-25 87.7 3.5 6e-25 87.2 3.5 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|385806000|ref|YP_005842398.1| - 0.00041 20.2 0.0 0.0012 18.8 0.0 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix domain Hemerythrin PF01814.23 gi|385806000|ref|YP_005842398.1| - 0.059 14.0 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF2122 PF09895.9 gi|385806001|ref|YP_005842399.1| - 8e-27 93.7 0.0 1e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) SAC3_GANP PF03399.16 gi|385806001|ref|YP_005842399.1| - 0.041 13.3 0.1 0.047 13.1 0.1 1.1 1 0 0 1 1 1 0 SAC3/GANP family Sec61_beta PF03911.16 gi|385806002|ref|YP_005842400.1| - 6.7e-15 54.8 2.8 8.1e-15 54.6 2.8 1.1 1 0 0 1 1 1 1 Sec61beta family Calcyon PF06387.11 gi|385806002|ref|YP_005842400.1| - 0.0056 16.7 0.1 0.0058 16.6 0.1 1.0 1 0 0 1 1 1 1 D1 dopamine receptor-interacting protein (calcyon) FBPase_3 PF01950.16 gi|385806003|ref|YP_005842401.1| - 3.1e-189 628.7 0.0 3.8e-189 628.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase RTC PF01137.21 gi|385806004|ref|YP_005842402.1| - 5.5e-80 267.7 0.1 6.3e-80 267.5 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|385806004|ref|YP_005842402.1| - 7.6e-21 74.6 0.1 1.8e-20 73.4 0.1 1.7 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain AIRS PF00586.24 gi|385806005|ref|YP_005842403.1| - 1e-11 45.3 0.0 1.7e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|385806005|ref|YP_005842403.1| - 2.1e-05 24.7 0.0 2.7e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain TYW3 PF02676.14 gi|385806006|ref|YP_005842404.1| - 1.3e-33 116.2 0.0 2e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 Proteasome PF00227.26 gi|385806007|ref|YP_005842405.1| - 1.1e-50 171.8 0.1 1.2e-50 171.7 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Carboxyl_trans PF01039.22 gi|385806008|ref|YP_005842406.1| - 9.8e-186 618.2 0.4 1.1e-185 618.0 0.4 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|385806008|ref|YP_005842406.1| - 0.0024 17.4 0.3 0.0056 16.2 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Biotin_lipoyl PF00364.22 gi|385806009|ref|YP_005842407.1| - 6e-18 64.5 4.6 7.1e-18 64.2 4.6 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|385806009|ref|YP_005842407.1| - 1.1e-14 54.0 1.6 9.1e-09 35.0 0.9 2.0 2 0 0 2 2 2 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|385806009|ref|YP_005842407.1| - 7.6e-08 31.8 0.1 0.0009 18.5 0.1 2.0 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|385806009|ref|YP_005842407.1| - 1.1e-06 29.3 0.1 0.012 16.3 0.0 2.0 1 1 1 2 2 2 2 HlyD family secretion protein PTS_EIIA_1 PF00358.20 gi|385806009|ref|YP_005842407.1| - 0.00014 21.6 0.8 0.022 14.5 0.2 2.1 1 1 1 2 2 2 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QRPTase_N PF02749.16 gi|385806009|ref|YP_005842407.1| - 0.00055 19.9 0.1 0.0068 16.4 0.1 2.0 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.6 gi|385806009|ref|YP_005842407.1| - 0.00061 19.7 0.3 0.0021 18.0 0.1 1.7 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|385806009|ref|YP_005842407.1| - 0.0025 17.7 0.3 0.0026 17.6 0.3 1.2 1 0 0 1 1 1 1 Glycine cleavage H-protein PYNP_C PF07831.13 gi|385806009|ref|YP_005842407.1| - 0.0084 15.7 0.2 1.3 8.8 0.1 2.1 2 0 0 2 2 2 2 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.11 gi|385806009|ref|YP_005842407.1| - 0.022 14.2 0.8 0.029 13.8 0.8 1.4 1 1 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DUF771 PF05595.11 gi|385806010|ref|YP_005842408.1| - 0.036 14.0 0.6 0.04 13.9 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF771) MFS_1 PF07690.16 gi|385806011|ref|YP_005842409.1| - 1.4e-07 30.8 35.8 1.4e-07 30.8 35.8 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily RHH_1 PF01402.21 gi|385806014|ref|YP_005842412.1| - 0.00032 20.5 0.3 0.00038 20.3 0.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ArfA PF03889.13 gi|385806014|ref|YP_005842412.1| - 0.038 13.5 0.1 0.86 9.1 0.0 2.0 2 0 0 2 2 2 0 Alternative ribosome-rescue factor A RHH_8 PF17723.1 gi|385806014|ref|YP_005842412.1| - 0.074 13.2 0.0 0.079 13.1 0.0 1.0 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family MtlR PF05068.12 gi|385806014|ref|YP_005842412.1| - 0.15 12.1 0.0 0.16 11.9 0.0 1.0 1 0 0 1 1 1 0 Mannitol repressor SBDS PF01172.18 gi|385806015|ref|YP_005842413.1| - 0.067 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein DUF4147 PF13660.6 gi|385806016|ref|YP_005842414.1| - 3.6e-75 252.4 0.8 1.2e-74 250.7 0.1 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|385806016|ref|YP_005842414.1| - 1.3e-27 96.1 0.2 2.5e-27 95.2 0.2 1.5 1 0 0 1 1 1 1 MOFRL family E3_binding PF02817.17 gi|385806016|ref|YP_005842414.1| - 0.017 15.5 0.1 0.056 13.8 0.1 1.9 1 0 0 1 1 1 0 e3 binding domain 3H PF02829.14 gi|385806016|ref|YP_005842414.1| - 0.023 15.0 0.5 0.27 11.5 0.4 2.6 3 0 0 3 3 3 0 3H domain Usp PF00582.26 gi|385806018|ref|YP_005842416.1| - 3.5e-25 89.2 0.0 3.9e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Peptidase_M22 PF00814.25 gi|385806018|ref|YP_005842416.1| - 0.066 12.9 0.0 0.077 12.7 0.0 1.1 1 0 0 1 1 1 0 Glycoprotease family AA_kinase PF00696.28 gi|385806019|ref|YP_005842417.1| - 1.1e-24 87.3 0.1 6e-24 85.0 0.1 1.8 1 1 0 1 1 1 1 Amino acid kinase family HIT PF01230.23 gi|385806021|ref|YP_005842419.1| - 1.7e-13 51.1 0.0 3.4e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|385806021|ref|YP_005842419.1| - 2.3e-09 37.7 0.0 3.7e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|385806021|ref|YP_005842419.1| - 2.8e-09 36.9 0.2 4.5e-09 36.2 0.2 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF4346 PF14251.6 gi|385806022|ref|YP_005842420.1| - 4.5e-05 23.5 0.8 0.00035 20.6 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) Complex1_LYR_2 PF13233.6 gi|385806022|ref|YP_005842420.1| - 0.053 14.3 0.6 0.14 12.9 0.4 1.8 2 0 0 2 2 2 0 Complex1_LYR-like Fe-ADH PF00465.19 gi|385806023|ref|YP_005842421.1| - 1.2e-77 261.2 0.0 1.3e-77 261.1 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|385806023|ref|YP_005842421.1| - 3.6e-13 49.8 0.9 2.7e-10 40.4 0.1 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|385806023|ref|YP_005842421.1| - 0.099 11.8 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 3-dehydroquinate synthase T2SSE PF00437.20 gi|385806023|ref|YP_005842421.1| - 0.15 11.1 0.1 0.23 10.5 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DHHA1 PF02272.19 gi|385806024|ref|YP_005842422.1| - 1.8e-06 28.4 0.0 4.5e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain Inositol_P PF00459.25 gi|385806025|ref|YP_005842423.1| - 2.3e-32 112.6 0.0 2.8e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|385806025|ref|YP_005842423.1| - 1.7e-05 24.4 0.1 3.2e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain tRNA-synt_1 PF00133.22 gi|385806026|ref|YP_005842424.1| - 4.8e-165 550.2 0.4 6.9e-165 549.7 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|385806026|ref|YP_005842424.1| - 2.6e-25 89.2 0.3 2.6e-25 89.2 0.3 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|385806026|ref|YP_005842424.1| - 7.3e-23 80.9 2.8 3.6e-07 29.3 0.0 4.2 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|385806026|ref|YP_005842424.1| - 3.3e-10 39.8 1.1 2.9e-06 26.8 0.0 3.2 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|385806026|ref|YP_005842424.1| - 1.5e-08 34.3 0.1 5.6e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|385806026|ref|YP_005842424.1| - 4.2e-05 22.6 0.0 0.00011 21.2 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (K) DZR PF12773.7 gi|385806026|ref|YP_005842424.1| - 0.00062 19.7 0.7 1.5 8.9 0.3 3.6 2 1 0 2 2 2 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|385806026|ref|YP_005842424.1| - 0.0037 16.6 4.3 5.7 6.4 0.1 4.3 4 0 0 4 4 4 1 Transcription factor zinc-finger zf-ACC PF17848.1 gi|385806026|ref|YP_005842424.1| - 0.0098 15.9 6.2 1.5 8.9 0.3 3.8 3 0 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain tRNA-synt_1b PF00579.25 gi|385806026|ref|YP_005842424.1| - 0.018 14.4 0.5 0.81 8.9 0.0 2.6 3 0 0 3 3 2 0 tRNA synthetases class I (W and Y) zf-ribbon_3 PF13248.6 gi|385806026|ref|YP_005842424.1| - 0.029 13.8 13.2 4.1 6.9 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain DUF2688 PF10892.8 gi|385806026|ref|YP_005842424.1| - 0.03 13.8 0.2 5.7 6.5 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zf-IS66 PF13005.7 gi|385806026|ref|YP_005842424.1| - 0.1 13.1 1.5 56 4.2 0.1 3.7 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 PSII_Pbs27 PF13326.6 gi|385806026|ref|YP_005842424.1| - 0.14 12.5 1.1 5.3 7.3 0.7 3.0 3 0 0 3 3 3 0 Photosystem II Pbs27 DUF983 PF06170.12 gi|385806026|ref|YP_005842424.1| - 0.18 12.2 0.5 21 5.6 0.0 3.1 3 0 0 3 3 2 0 Protein of unknown function (DUF983) Mu-like_Com PF10122.9 gi|385806026|ref|YP_005842424.1| - 0.19 11.2 11.7 0.44 10.0 0.2 3.7 4 0 0 4 4 4 0 Mu-like prophage protein Com zinc_ribbon_2 PF13240.6 gi|385806026|ref|YP_005842424.1| - 0.19 11.5 16.2 5.1 6.9 0.9 4.4 4 0 0 4 4 4 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|385806026|ref|YP_005842424.1| - 0.33 11.1 6.9 7.1 6.8 0.1 3.7 4 0 0 4 4 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385806026|ref|YP_005842424.1| - 0.52 10.3 6.1 3 7.9 0.2 3.4 3 0 0 3 3 3 0 PhnA Zinc-Ribbon Bac_small_YrzI PF09501.10 gi|385806026|ref|YP_005842424.1| - 0.52 10.5 2.6 3.2 8.0 2.6 2.5 1 0 0 1 1 1 0 Probable sporulation protein (Bac_small_yrzI) zf-NADH-PPase PF09297.11 gi|385806026|ref|YP_005842424.1| - 0.94 9.2 9.9 16 5.3 0.0 4.1 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385806026|ref|YP_005842424.1| - 1.1 9.2 9.1 19 5.4 0.1 3.9 4 0 0 4 4 3 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|385806026|ref|YP_005842424.1| - 7.2 6.7 9.9 15 5.7 0.1 3.9 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.6 gi|385806026|ref|YP_005842424.1| - 8.1 6.5 7.1 52 3.9 0.1 3.6 3 0 0 3 3 3 0 zinc-ribbon domain CN_hydrolase PF00795.22 gi|385806027|ref|YP_005842425.1| - 9.6e-26 90.7 0.0 1.2e-25 90.4 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase VIT1 PF01988.19 gi|385806028|ref|YP_005842426.1| - 4.4e-05 23.4 5.9 0.044 13.6 4.0 2.1 1 1 1 2 2 2 2 VIT family Ribosomal_S26e PF01283.19 gi|385806029|ref|YP_005842427.1| - 3.2e-25 88.7 3.2 3.6e-25 88.5 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|385806029|ref|YP_005842427.1| - 0.0063 16.7 0.4 0.14 12.4 0.2 2.5 2 0 0 2 2 2 1 C4-type zinc ribbon domain Yippee-Mis18 PF03226.14 gi|385806029|ref|YP_005842427.1| - 0.023 14.9 2.1 0.22 11.7 2.6 1.9 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-dskA_traR PF01258.17 gi|385806029|ref|YP_005842427.1| - 4.9 7.2 9.2 0.65 10.0 1.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger AP_endonuc_2 PF01261.24 gi|385806030|ref|YP_005842428.1| - 5e-21 75.1 0.0 6.2e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|385806030|ref|YP_005842428.1| - 0.0046 16.2 0.3 0.018 14.3 0.3 1.8 1 1 0 1 1 1 1 UV-endonuclease UvdE PolC_DP2 PF03833.13 gi|385806030|ref|YP_005842428.1| - 0.011 13.7 0.2 0.014 13.3 0.2 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Amidohydro_1 PF01979.20 gi|385806030|ref|YP_005842428.1| - 0.048 13.0 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 Amidohydrolase family DUF3627 PF12299.8 gi|385806030|ref|YP_005842428.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3627) Lactamase_B_2 PF12706.7 gi|385806031|ref|YP_005842429.1| - 1.2e-22 80.4 0.0 1.6e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385806031|ref|YP_005842429.1| - 2.7e-10 40.6 0.1 5.5e-10 39.6 0.0 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|385806031|ref|YP_005842429.1| - 1.4e-06 27.9 0.0 2.9e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|385806031|ref|YP_005842429.1| - 0.0055 16.6 0.0 0.025 14.5 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|385806031|ref|YP_005842429.1| - 0.088 12.2 0.1 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain UPF0020 PF01170.18 gi|385806032|ref|YP_005842430.1| - 1.9e-20 73.4 0.0 7.3e-19 68.2 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|385806032|ref|YP_005842430.1| - 6.6e-05 22.6 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|385806032|ref|YP_005842430.1| - 0.00093 19.9 0.0 0.0019 18.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385806032|ref|YP_005842430.1| - 0.0049 17.5 0.0 0.017 15.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|385806032|ref|YP_005842430.1| - 0.0053 16.2 0.0 1.1 8.6 0.0 2.2 1 1 1 2 2 2 2 RRNA methyltransferase AviRa MethyltransfD12 PF02086.15 gi|385806032|ref|YP_005842430.1| - 0.02 14.6 0.0 0.24 11.1 0.0 2.0 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|385806032|ref|YP_005842430.1| - 0.042 13.5 0.0 3.2 7.4 0.0 2.2 2 0 0 2 2 2 0 DNA methylase N6_Mtase PF02384.16 gi|385806032|ref|YP_005842430.1| - 0.051 12.8 0.0 0.13 11.5 0.0 1.7 1 1 0 1 1 1 0 N-6 DNA Methylase PASTA PF03793.19 gi|385806032|ref|YP_005842430.1| - 0.19 11.6 0.3 20 5.1 0.0 3.0 3 0 0 3 3 3 0 PASTA domain Pribosyltran_N PF13793.6 gi|385806033|ref|YP_005842431.1| - 2.1e-24 85.7 0.0 1e-22 80.2 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|385806033|ref|YP_005842431.1| - 1.4e-14 54.0 0.5 5.6e-14 52.0 0.1 2.1 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|385806033|ref|YP_005842431.1| - 3.2e-08 33.8 0.4 6.6e-08 32.8 0.4 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|385806033|ref|YP_005842431.1| - 0.00012 21.6 0.1 0.00048 19.6 0.0 1.9 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|385806033|ref|YP_005842431.1| - 0.0017 17.9 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Tsp45I PF06300.12 gi|385806033|ref|YP_005842431.1| - 0.035 13.7 0.1 0.087 12.4 0.0 1.7 2 0 0 2 2 2 0 Tsp45I type II restriction enzyme Kinase-PolyVal PF18762.1 gi|385806033|ref|YP_005842431.1| - 0.055 13.4 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Topoisom_bac PF01131.20 gi|385806034|ref|YP_005842432.1| - 1.5e-107 360.2 0.1 2e-107 359.8 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|385806034|ref|YP_005842432.1| - 1.8e-14 53.8 1.0 1.1e-13 51.3 0.0 2.8 3 0 0 3 3 3 1 Toprim domain RNA_pol_Rpb6 PF01192.22 gi|385806035|ref|YP_005842433.1| - 6.8e-14 51.5 0.0 9.2e-14 51.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.24 gi|385806036|ref|YP_005842434.1| - 2e-178 594.0 19.6 2.3e-178 593.8 19.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family CMD PF02627.20 gi|385806037|ref|YP_005842435.1| - 1.2e-16 60.5 0.1 1.3e-16 60.4 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family RecR PF02132.15 gi|385806039|ref|YP_005842437.1| - 0.046 13.3 0.8 0.046 13.3 0.8 2.3 2 0 0 2 2 2 0 RecR protein zf-RING_9 PF13901.6 gi|385806039|ref|YP_005842437.1| - 0.092 12.7 4.7 2.4 8.1 1.8 2.3 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon zf-SNAP50_C PF12251.8 gi|385806039|ref|YP_005842437.1| - 4.7 6.8 9.8 0.23 11.1 3.6 1.9 2 0 0 2 2 2 0 snRNA-activating protein of 50kDa MW C terminal Ribonuc_red_lgC PF02867.15 gi|385806042|ref|YP_005842440.1| - 6.6e-181 602.4 0.0 3.6e-180 600.0 0.0 1.9 2 0 0 2 2 2 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|385806042|ref|YP_005842440.1| - 2.7e-26 91.4 0.5 5.8e-26 90.3 0.5 1.6 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|385806042|ref|YP_005842440.1| - 2e-10 41.1 0.6 2e-10 41.1 0.6 2.5 2 0 0 2 2 2 1 ATP cone domain CHAD PF05235.14 gi|385806042|ref|YP_005842440.1| - 0.1 12.6 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 CHAD domain DUF1451 PF07295.11 gi|385806042|ref|YP_005842440.1| - 0.13 12.3 0.3 1.7 8.7 0.1 2.5 2 0 0 2 2 2 0 Zinc-ribbon containing domain Lactamase_B PF00753.27 gi|385806043|ref|YP_005842441.1| - 2e-18 67.1 0.0 4.9e-18 65.8 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385806043|ref|YP_005842441.1| - 0.0029 17.1 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|385806043|ref|YP_005842441.1| - 0.0061 16.0 0.1 0.016 14.6 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain KaiA PF07688.12 gi|385806043|ref|YP_005842441.1| - 0.025 14.7 0.8 0.06 13.5 0.1 1.9 2 0 0 2 2 2 0 KaiA C-terminal domain ABC_tran PF00005.27 gi|385806044|ref|YP_005842442.1| - 5.2e-35 120.9 0.3 1.2e-34 119.8 0.1 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|385806044|ref|YP_005842442.1| - 9.7e-09 35.4 10.0 2.4e-05 24.3 1.4 2.7 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385806044|ref|YP_005842442.1| - 1.9e-06 27.5 1.3 8.8e-06 25.3 1.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385806044|ref|YP_005842442.1| - 4.1e-05 24.2 1.1 4.1e-05 24.2 1.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385806044|ref|YP_005842442.1| - 4.5e-05 23.1 0.3 0.0001 21.9 0.3 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|385806044|ref|YP_005842442.1| - 0.00023 21.4 0.2 0.0041 17.3 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|385806044|ref|YP_005842442.1| - 0.0003 20.6 2.6 0.0016 18.3 2.6 2.2 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|385806044|ref|YP_005842442.1| - 0.00037 19.4 1.4 0.23 10.2 0.2 2.5 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|385806044|ref|YP_005842442.1| - 0.0004 20.1 0.1 0.00065 19.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385806044|ref|YP_005842442.1| - 0.0018 18.6 0.2 0.0042 17.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|385806044|ref|YP_005842442.1| - 0.0073 16.2 0.1 0.023 14.6 0.1 1.8 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|385806044|ref|YP_005842442.1| - 0.0075 16.0 0.0 0.023 14.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|385806044|ref|YP_005842442.1| - 0.012 14.8 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Adeno_IVa2 PF02456.15 gi|385806044|ref|YP_005842442.1| - 0.071 11.9 0.3 0.11 11.3 0.3 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_16 PF13191.6 gi|385806044|ref|YP_005842442.1| - 0.082 13.3 0.0 0.14 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|385806044|ref|YP_005842442.1| - 0.092 13.3 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF4236 PF14020.6 gi|385806044|ref|YP_005842442.1| - 0.27 11.8 1.0 0.57 10.8 1.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4236) BPD_transp_1 PF00528.22 gi|385806045|ref|YP_005842443.1| - 4.4e-16 59.2 17.0 4.4e-16 59.2 17.0 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|385806046|ref|YP_005842444.1| - 7.8e-29 101.1 0.0 9.2e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ATPase_gene1 PF09527.10 gi|385806046|ref|YP_005842444.1| - 0.049 13.8 2.4 0.1 12.8 2.4 1.5 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter eRF1_1 PF03463.15 gi|385806047|ref|YP_005842445.1| - 2e-20 73.1 0.2 3.9e-20 72.2 0.2 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|385806047|ref|YP_005842445.1| - 2.4e-15 57.0 0.2 2e-14 54.0 0.0 2.5 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|385806047|ref|YP_005842445.1| - 3.4e-08 33.9 0.1 6.2e-08 33.0 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 2 BcrAD_BadFG PF01869.20 gi|385806047|ref|YP_005842445.1| - 0.017 14.6 0.1 0.027 14.0 0.1 1.2 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Smoothelin PF12510.8 gi|385806047|ref|YP_005842445.1| - 0.21 11.7 3.6 2.1 8.5 0.8 2.7 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein Radical_SAM PF04055.21 gi|385806048|ref|YP_005842446.1| - 1.2e-14 55.0 0.2 2.8e-13 50.6 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|385806048|ref|YP_005842446.1| - 1.1e-08 35.2 0.1 3e-08 33.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|385806048|ref|YP_005842446.1| - 7.6e-07 29.5 0.1 1.8e-06 28.3 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain NTP_transf_2 PF01909.23 gi|385806049|ref|YP_005842447.1| - 2e-07 31.2 0.4 4.9e-07 30.0 0.4 2.1 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|385806049|ref|YP_005842447.1| - 3.2e-05 23.9 0.1 8.8e-05 22.5 0.1 1.8 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Put_Phosphatase PF06888.12 gi|385806049|ref|YP_005842447.1| - 0.0071 15.8 0.0 0.0097 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative Phosphatase DUF2286 PF10051.9 gi|385806050|ref|YP_005842448.1| - 4.3e-43 146.4 6.7 5.4e-43 146.1 6.7 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Aminotran_1_2 PF00155.21 gi|385806051|ref|YP_005842449.1| - 4.3e-39 134.7 0.0 4.8e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|385806051|ref|YP_005842449.1| - 1.6e-13 50.2 0.0 2.5e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|385806051|ref|YP_005842449.1| - 0.0043 15.8 0.0 0.006 15.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Fis1_TPR_N PF14852.6 gi|385806051|ref|YP_005842449.1| - 0.038 13.7 0.6 0.53 10.0 0.0 2.4 2 0 0 2 2 2 0 Fis1 N-terminal tetratricopeptide repeat Beta_elim_lyase PF01212.21 gi|385806051|ref|YP_005842449.1| - 0.038 13.3 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase DPPIV_N PF00930.21 gi|385806051|ref|YP_005842449.1| - 0.14 10.9 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region ABC_tran PF00005.27 gi|385806052|ref|YP_005842450.1| - 2.4e-31 109.1 0.0 4.4e-31 108.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385806052|ref|YP_005842450.1| - 1e-11 45.2 0.2 3.5e-05 23.8 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|385806052|ref|YP_005842450.1| - 8.9e-11 42.4 1.3 1.9e-10 41.3 1.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|385806052|ref|YP_005842450.1| - 0.00021 21.9 0.7 0.0014 19.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|385806052|ref|YP_005842450.1| - 0.00045 19.9 0.0 0.00087 19.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|385806052|ref|YP_005842450.1| - 0.0013 18.7 0.0 0.0027 17.7 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|385806052|ref|YP_005842450.1| - 0.0051 17.1 0.2 0.015 15.6 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|385806052|ref|YP_005842450.1| - 0.0054 17.1 0.0 0.012 16.0 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|385806052|ref|YP_005842450.1| - 0.018 14.6 0.0 0.051 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|385806052|ref|YP_005842450.1| - 0.025 15.0 0.4 0.14 12.5 0.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|385806052|ref|YP_005842450.1| - 0.029 14.8 0.0 0.062 13.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|385806052|ref|YP_005842450.1| - 0.038 13.9 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 1 0 RsgA GTPase SMC_N PF02463.19 gi|385806052|ref|YP_005842450.1| - 0.063 12.7 0.0 1.1 8.6 0.0 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|385806052|ref|YP_005842450.1| - 0.064 13.0 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|385806052|ref|YP_005842450.1| - 0.073 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|385806052|ref|YP_005842450.1| - 0.083 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|385806052|ref|YP_005842450.1| - 0.091 13.0 0.9 0.29 11.4 0.4 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|385806052|ref|YP_005842450.1| - 0.12 12.1 0.5 11 5.7 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein MutS_V PF00488.21 gi|385806052|ref|YP_005842450.1| - 0.14 12.1 0.1 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 MutS domain V MMR_HSR1 PF01926.23 gi|385806052|ref|YP_005842450.1| - 0.15 12.2 0.2 0.94 9.6 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|385806052|ref|YP_005842450.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|385806052|ref|YP_005842450.1| - 0.21 11.1 3.0 0.44 10.1 0.3 2.7 3 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DUF2117 PF09890.9 gi|385806052|ref|YP_005842450.1| - 0.22 11.0 3.1 1.2 8.6 3.1 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) Band_7 PF01145.25 gi|385806052|ref|YP_005842450.1| - 0.24 11.4 0.7 0.38 10.8 0.7 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family ABC2_membrane PF01061.24 gi|385806053|ref|YP_005842451.1| - 2.7e-34 118.4 16.5 2.7e-34 118.4 16.5 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|385806053|ref|YP_005842451.1| - 1.3e-16 60.7 21.9 1.5e-16 60.5 21.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|385806053|ref|YP_005842451.1| - 1.3e-10 41.0 17.9 1.3e-10 41.0 17.9 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Sua5_yciO_yrdC PF01300.18 gi|385806054|ref|YP_005842452.1| - 1.2e-47 161.8 0.0 1.9e-47 161.1 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|385806054|ref|YP_005842452.1| - 2.8e-27 95.4 0.0 5.7e-27 94.4 0.0 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|385806054|ref|YP_005842452.1| - 1.1e-25 89.1 8.9 1e-12 47.6 1.5 2.3 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|385806054|ref|YP_005842452.1| - 3.2e-21 75.5 0.1 8.5e-21 74.2 0.1 1.8 1 0 0 1 1 1 1 Acylphosphatase DUF4428 PF14471.6 gi|385806054|ref|YP_005842452.1| - 0.97 9.4 6.8 21 5.1 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) AIRS_C PF02769.22 gi|385806055|ref|YP_005842453.1| - 1.7e-23 83.4 0.3 2.7e-23 82.8 0.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|385806055|ref|YP_005842453.1| - 7.9e-17 61.7 0.1 2e-16 60.4 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HupF_HypC PF01455.18 gi|385806056|ref|YP_005842454.1| - 3.8e-15 55.8 0.0 4.3e-15 55.6 0.0 1.0 1 0 0 1 1 1 1 HupF/HypC family DNA_ligase_OB PF03120.16 gi|385806056|ref|YP_005842454.1| - 0.058 13.3 0.3 0.065 13.1 0.3 1.2 1 0 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain HypD PF01924.16 gi|385806057|ref|YP_005842455.1| - 4.8e-125 417.3 0.0 5.6e-125 417.1 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family Fer4_22 PF17179.4 gi|385806058|ref|YP_005842456.1| - 2.1e-26 92.6 9.6 2.1e-26 92.6 9.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385806058|ref|YP_005842456.1| - 2.9e-07 30.5 11.0 0.0011 19.0 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|385806058|ref|YP_005842456.1| - 5.1e-07 29.9 3.0 0.0038 17.4 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385806058|ref|YP_005842456.1| - 6.3e-07 29.4 10.0 0.0018 18.4 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|385806058|ref|YP_005842456.1| - 8.9e-07 29.4 4.6 0.0078 16.7 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385806058|ref|YP_005842456.1| - 1.8e-06 28.0 7.6 6.9e-06 26.1 7.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385806058|ref|YP_005842456.1| - 1e-05 25.3 11.4 0.0045 17.0 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|385806058|ref|YP_005842456.1| - 1.2e-05 24.9 15.2 0.0089 15.8 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|385806058|ref|YP_005842456.1| - 1.6e-05 25.7 7.0 0.021 15.7 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|385806058|ref|YP_005842456.1| - 0.0003 21.2 11.2 0.004 17.6 11.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385806058|ref|YP_005842456.1| - 0.00094 19.5 1.1 0.00094 19.5 1.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385806058|ref|YP_005842456.1| - 0.0072 16.9 16.9 0.2 12.3 17.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385806058|ref|YP_005842456.1| - 0.042 13.9 19.6 0.18 11.9 3.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain FIVAR PF07554.13 gi|385806058|ref|YP_005842456.1| - 0.12 13.2 0.3 0.24 12.2 0.3 1.5 1 0 0 1 1 1 0 FIVAR domain Fer4_13 PF13370.6 gi|385806058|ref|YP_005842456.1| - 2 9.0 12.7 4.6 7.9 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NAD_binding_1 PF00175.21 gi|385806059|ref|YP_005842457.1| - 7.3e-16 58.8 0.0 1.4e-15 57.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.9 gi|385806059|ref|YP_005842457.1| - 3.9e-11 42.6 2.2 8.1e-11 41.6 2.2 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.24 gi|385806059|ref|YP_005842457.1| - 4e-06 27.1 0.0 7.1e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|385806059|ref|YP_005842457.1| - 0.19 11.9 0.0 7 6.7 0.0 2.4 1 1 1 2 2 2 0 Ferric reductase NAD binding domain Oxidored_q6 PF01058.22 gi|385806060|ref|YP_005842458.1| - 8e-22 77.5 0.0 1.2e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|385806061|ref|YP_005842459.1| - 4.5e-27 95.1 0.0 8.2e-13 48.1 0.0 3.2 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|385806061|ref|YP_005842459.1| - 0.065 12.3 0.0 1.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DUF357 PF04010.13 gi|385806062|ref|YP_005842460.1| - 5.3e-24 84.1 0.4 8.9e-24 83.4 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|385806062|ref|YP_005842460.1| - 3.7e-16 59.6 0.0 7.4e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|385806062|ref|YP_005842460.1| - 4.5e-05 23.4 0.0 0.0073 16.2 0.0 2.3 1 1 1 2 2 2 2 FAD synthetase Pantoate_ligase PF02569.15 gi|385806062|ref|YP_005842460.1| - 0.00021 20.6 0.0 0.00036 19.8 0.0 1.4 1 0 0 1 1 1 1 Pantoate-beta-alanine ligase TP_methylase PF00590.20 gi|385806063|ref|YP_005842461.1| - 5.4e-18 65.7 0.0 7.4e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF4976 PF16347.5 gi|385806063|ref|YP_005842461.1| - 0.2 12.0 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4976) POR PF01558.18 gi|385806064|ref|YP_005842462.1| - 8.2e-33 113.9 0.1 9.6e-33 113.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Cullin_Nedd8 PF10557.9 gi|385806064|ref|YP_005842462.1| - 0.052 13.6 1.2 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 Cullin protein neddylation domain TPP_enzyme_C PF02775.21 gi|385806065|ref|YP_005842463.1| - 4.6e-30 104.4 0.1 9.2e-30 103.4 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|385806065|ref|YP_005842463.1| - 2.6e-16 60.1 0.0 3.8e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|385806065|ref|YP_005842463.1| - 5e-10 38.8 17.6 4.2e-08 32.7 1.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385806065|ref|YP_005842463.1| - 1.6e-09 37.4 9.5 8e-06 25.7 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|385806065|ref|YP_005842463.1| - 5.5e-08 32.8 7.6 1.1e-07 31.9 7.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385806065|ref|YP_005842463.1| - 1.7e-07 31.3 8.5 3.6e-07 30.2 8.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385806065|ref|YP_005842463.1| - 2.8e-07 31.0 8.7 2.6e-05 24.7 9.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385806065|ref|YP_005842463.1| - 4.3e-07 29.6 8.8 0.00016 21.5 1.4 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|385806065|ref|YP_005842463.1| - 5.1e-07 29.7 19.0 3.2e-05 24.0 10.6 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain DXP_synthase_N PF13292.6 gi|385806065|ref|YP_005842463.1| - 0.00012 21.4 0.2 0.0036 16.6 0.1 2.3 1 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_16 PF13484.6 gi|385806065|ref|YP_005842463.1| - 0.00018 22.4 10.3 0.0043 18.0 1.6 2.8 1 1 3 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|385806065|ref|YP_005842463.1| - 0.017 15.6 3.1 0.017 15.6 3.1 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|385806065|ref|YP_005842463.1| - 0.046 13.3 0.1 9.6 5.8 0.0 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_17 PF13534.6 gi|385806065|ref|YP_005842463.1| - 0.13 12.8 9.0 0.41 11.2 1.4 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385806065|ref|YP_005842463.1| - 0.31 11.8 10.1 2.7 8.8 0.8 3.2 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|385806065|ref|YP_005842463.1| - 0.31 11.6 11.8 1.9 9.1 2.1 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|385806065|ref|YP_005842463.1| - 2.3 8.8 11.9 1.6e+02 2.9 11.9 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Succ_CoA_lig PF13607.6 gi|385806066|ref|YP_005842464.1| - 1.5e-46 157.6 0.6 2.3e-45 153.8 0.1 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|385806066|ref|YP_005842464.1| - 8.3e-29 100.4 0.1 2.6e-26 92.4 0.1 2.5 2 0 0 2 2 2 2 CoA binding domain CoA_binding PF02629.19 gi|385806066|ref|YP_005842464.1| - 1.6e-15 57.5 2.5 4.6e-15 56.1 2.1 2.0 2 0 0 2 2 2 1 CoA binding domain Antimicrobial17 PF08129.11 gi|385806066|ref|YP_005842464.1| - 0.055 13.5 0.7 2 8.5 0.1 2.7 2 0 0 2 2 2 0 Alpha/beta enterocin family Methyltr_RsmB-F PF01189.17 gi|385806067|ref|YP_005842465.1| - 5.5e-54 182.9 0.0 7.1e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|385806067|ref|YP_005842465.1| - 2.4e-10 40.4 0.1 5.2e-10 39.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|385806067|ref|YP_005842465.1| - 1.9e-08 34.7 0.0 1e-07 32.4 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|385806067|ref|YP_005842465.1| - 4.1e-05 23.8 0.0 6.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|385806067|ref|YP_005842465.1| - 0.0001 22.1 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|385806067|ref|YP_005842465.1| - 0.00018 21.0 0.1 0.00072 19.1 0.0 2.0 3 0 0 3 3 3 1 Putative methyltransferase Methyltransf_25 PF13649.6 gi|385806067|ref|YP_005842465.1| - 0.00034 21.2 0.0 0.0014 19.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|385806067|ref|YP_005842465.1| - 0.001 18.4 0.1 0.016 14.5 0.1 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.16 gi|385806067|ref|YP_005842465.1| - 0.012 15.4 0.1 0.072 12.8 0.0 2.2 3 0 0 3 3 3 0 Met-10+ like-protein MTS PF05175.14 gi|385806067|ref|YP_005842465.1| - 0.031 13.8 0.0 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain TssO PF17561.2 gi|385806067|ref|YP_005842465.1| - 0.15 12.2 0.2 0.15 12.2 0.2 2.0 3 0 0 3 3 3 0 Type VI secretion system, TssO UPF0113 PF03657.13 gi|385806068|ref|YP_005842466.1| - 2.4e-05 24.5 0.2 5.2e-05 23.4 0.2 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain FKBP26_C PF18046.1 gi|385806069|ref|YP_005842467.1| - 1.7e-15 56.8 5.0 3.6e-15 55.8 5.0 1.5 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|385806069|ref|YP_005842467.1| - 1.3e-13 51.1 0.2 3.5e-13 49.7 0.0 1.8 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Tex_YqgF PF16921.5 gi|385806069|ref|YP_005842467.1| - 0.14 12.7 0.3 0.54 10.7 0.2 1.9 2 0 0 2 2 2 0 Tex protein YqgF-like domain tRNA-synt_2b PF00587.25 gi|385806070|ref|YP_005842468.1| - 2.6e-33 115.5 0.0 5.3e-33 114.5 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|385806070|ref|YP_005842468.1| - 2e-15 57.0 11.5 1.7e-14 53.9 11.7 2.2 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain DUF2408 PF10303.9 gi|385806070|ref|YP_005842468.1| - 0.0032 18.0 3.8 0.0067 17.0 3.8 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) CREPT PF16566.5 gi|385806070|ref|YP_005842468.1| - 0.04 14.1 3.5 0.073 13.2 3.5 1.3 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour DUF4391 PF14335.6 gi|385806070|ref|YP_005842468.1| - 0.08 12.6 6.2 0.14 11.9 6.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4391) PCRF PF03462.18 gi|385806070|ref|YP_005842468.1| - 0.098 12.5 3.4 0.17 11.7 3.4 1.3 1 0 0 1 1 1 0 PCRF domain EB1 PF03271.17 gi|385806070|ref|YP_005842468.1| - 0.23 11.7 2.1 0.29 11.4 0.5 2.0 2 0 0 2 2 1 0 EB1-like C-terminal motif OmpH PF03938.14 gi|385806070|ref|YP_005842468.1| - 0.61 10.4 6.1 1.2 9.5 6.1 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Nup88 PF10168.9 gi|385806070|ref|YP_005842468.1| - 0.66 7.7 9.5 0.9 7.3 9.5 1.1 1 0 0 1 1 1 0 Nuclear pore component Cep57_MT_bd PF06657.13 gi|385806070|ref|YP_005842468.1| - 1 9.8 8.0 5.2 7.6 8.6 1.9 2 0 0 2 2 1 0 Centrosome microtubule-binding domain of Cep57 DUF349 PF03993.12 gi|385806070|ref|YP_005842468.1| - 1.3 9.4 8.2 4 7.8 8.2 1.9 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) AAA_11 PF13086.6 gi|385806070|ref|YP_005842468.1| - 2.5 7.8 4.7 4 7.1 4.7 1.2 1 0 0 1 1 1 0 AAA domain eIF-4B PF06273.11 gi|385806070|ref|YP_005842468.1| - 3.8 6.5 6.4 5.1 6.0 6.4 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B Acid_phosphat_B PF03767.14 gi|385806072|ref|YP_005842470.1| - 7.8e-06 25.6 0.4 1.7e-05 24.6 0.3 1.4 1 1 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 gi|385806072|ref|YP_005842470.1| - 0.00033 20.7 0.1 0.0034 17.5 0.1 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF4849 PF16141.5 gi|385806072|ref|YP_005842470.1| - 0.03 13.6 0.0 0.071 12.4 0.0 1.5 1 1 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 HAD_SAK_2 PF18143.1 gi|385806072|ref|YP_005842470.1| - 0.053 13.8 0.1 0.066 13.5 0.1 1.2 1 0 0 1 1 1 0 HAD domain in Swiss Army Knife RNA repair proteins Hydrolase PF00702.26 gi|385806072|ref|YP_005842470.1| - 0.2 11.9 0.1 0.62 10.3 0.1 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2730 PF10805.8 gi|385806073|ref|YP_005842471.1| - 0.0016 18.5 2.4 0.0026 17.8 2.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) Laminin_II PF06009.12 gi|385806073|ref|YP_005842471.1| - 0.0059 16.6 5.0 0.0087 16.1 3.6 1.8 2 0 0 2 2 2 1 Laminin Domain II Shugoshin_N PF07558.11 gi|385806073|ref|YP_005842471.1| - 0.01 15.7 2.7 0.024 14.5 2.7 1.6 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Laminin_I PF06008.14 gi|385806073|ref|YP_005842471.1| - 0.01 15.5 3.9 0.015 15.0 3.9 1.2 1 0 0 1 1 1 0 Laminin Domain I DUF5082 PF16888.5 gi|385806073|ref|YP_005842471.1| - 0.016 15.5 3.1 0.033 14.5 3.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) Lzipper-MIP1 PF14389.6 gi|385806073|ref|YP_005842471.1| - 0.022 15.0 5.0 0.035 14.4 3.5 2.0 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DNA_ligase_A_N PF04675.14 gi|385806073|ref|YP_005842471.1| - 0.022 15.1 4.3 3.8 7.8 0.5 3.0 1 1 2 3 3 3 0 DNA ligase N terminus bZIP_2 PF07716.15 gi|385806073|ref|YP_005842471.1| - 0.023 14.8 3.2 0.075 13.1 3.2 1.9 1 0 0 1 1 1 0 Basic region leucine zipper XhlA PF10779.9 gi|385806073|ref|YP_005842471.1| - 0.027 14.7 8.1 0.027 14.7 8.1 2.6 3 1 0 3 3 2 0 Haemolysin XhlA TraF_2 PF13729.6 gi|385806073|ref|YP_005842471.1| - 0.032 13.6 0.5 0.045 13.1 0.5 1.3 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein ABC_tran_CTD PF16326.5 gi|385806073|ref|YP_005842471.1| - 0.041 14.1 5.6 0.15 12.3 5.6 2.1 1 1 0 1 1 1 0 ABC transporter C-terminal domain Golgin_A5 PF09787.9 gi|385806073|ref|YP_005842471.1| - 0.048 13.1 6.0 0.066 12.7 6.0 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Cast PF10174.9 gi|385806073|ref|YP_005842471.1| - 0.051 11.8 10.8 0.077 11.2 10.7 1.5 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Fzo_mitofusin PF04799.13 gi|385806073|ref|YP_005842471.1| - 0.06 12.9 1.6 0.09 12.3 1.6 1.4 1 0 0 1 1 1 0 fzo-like conserved region Spc24 PF08286.11 gi|385806073|ref|YP_005842471.1| - 0.062 13.5 2.9 0.12 12.6 2.9 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 SlyX PF04102.12 gi|385806073|ref|YP_005842471.1| - 0.077 13.6 2.5 0.21 12.2 1.7 2.2 2 1 0 2 2 1 0 SlyX ACCA PF03255.14 gi|385806073|ref|YP_005842471.1| - 0.091 12.6 3.2 0.063 13.1 1.0 1.8 2 1 1 3 3 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NPV_P10 PF05531.12 gi|385806073|ref|YP_005842471.1| - 0.093 13.2 0.4 0.24 11.9 0.4 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein GPS2_interact PF15784.5 gi|385806073|ref|YP_005842471.1| - 0.11 13.0 5.3 0.26 11.8 5.3 1.7 1 0 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain ApoLp-III PF07464.11 gi|385806073|ref|YP_005842471.1| - 0.11 12.6 3.0 0.4 10.8 1.8 2.1 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF2065 PF09838.9 gi|385806073|ref|YP_005842471.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) ZapB PF06005.12 gi|385806073|ref|YP_005842471.1| - 0.11 12.9 7.4 0.24 11.9 6.7 2.1 1 1 0 1 1 1 0 Cell division protein ZapB Ax_dynein_light PF10211.9 gi|385806073|ref|YP_005842471.1| - 0.11 12.4 7.7 0.19 11.6 7.7 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain FANCI_S3 PF14677.6 gi|385806073|ref|YP_005842471.1| - 0.12 12.1 3.5 1.4 8.6 0.0 2.3 2 1 0 2 2 2 0 FANCI solenoid 3 DUF4446 PF14584.6 gi|385806073|ref|YP_005842471.1| - 0.14 12.1 4.7 0.19 11.7 4.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) MutS_III PF05192.18 gi|385806073|ref|YP_005842471.1| - 0.16 12.1 0.7 0.2 11.8 0.7 1.1 1 0 0 1 1 1 0 MutS domain III HSBP1 PF06825.12 gi|385806073|ref|YP_005842471.1| - 0.17 11.8 4.9 0.16 11.8 3.1 1.9 1 1 1 2 2 2 0 Heat shock factor binding protein 1 DUF16 PF01519.16 gi|385806073|ref|YP_005842471.1| - 0.23 12.0 6.3 0.34 11.4 5.9 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF16 Tropomyosin_1 PF12718.7 gi|385806073|ref|YP_005842471.1| - 0.27 11.4 11.5 0.46 10.6 11.5 1.5 1 1 0 1 1 1 0 Tropomyosin like FlaC_arch PF05377.11 gi|385806073|ref|YP_005842471.1| - 0.37 11.2 8.5 1.4 9.4 8.5 2.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|385806073|ref|YP_005842471.1| - 0.53 10.6 6.8 0.64 10.4 5.0 2.0 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMPIT PF07851.13 gi|385806073|ref|YP_005842471.1| - 0.71 9.1 3.3 0.84 8.8 3.3 1.2 1 0 0 1 1 1 0 TMPIT-like protein Prefoldin PF02996.17 gi|385806073|ref|YP_005842471.1| - 0.72 9.8 7.8 0.51 10.3 3.5 2.6 1 1 1 2 2 2 0 Prefoldin subunit YabA PF06156.13 gi|385806073|ref|YP_005842471.1| - 0.83 10.3 5.2 2.2 9.0 4.4 2.1 2 0 0 2 2 2 0 Initiation control protein YabA Seryl_tRNA_N PF02403.22 gi|385806073|ref|YP_005842471.1| - 1.1 9.5 10.6 1.3 9.3 8.5 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Med9 PF07544.13 gi|385806073|ref|YP_005842471.1| - 1.1 9.3 6.4 0.77 9.9 3.4 2.3 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 YvrJ PF12841.7 gi|385806073|ref|YP_005842471.1| - 1.2 8.7 5.8 0.59 9.7 1.4 2.5 2 0 0 2 2 2 0 YvrJ protein family DUF724 PF05266.14 gi|385806073|ref|YP_005842471.1| - 1.5 8.6 9.8 7.9 6.3 8.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) UPF0184 PF03670.13 gi|385806073|ref|YP_005842471.1| - 1.8 9.0 5.4 4.3 7.8 2.9 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) APG6_N PF17675.1 gi|385806073|ref|YP_005842471.1| - 2.6 8.6 11.6 2.8 8.5 8.7 2.1 2 1 0 2 2 2 0 Apg6 coiled-coil region Atg14 PF10186.9 gi|385806073|ref|YP_005842471.1| - 3 6.8 6.1 4.2 6.4 6.0 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1690 PF07956.11 gi|385806073|ref|YP_005842471.1| - 4.9 7.6 8.6 7.7 6.9 4.1 2.3 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) CitG PF01874.16 gi|385806074|ref|YP_005842472.1| - 5.9e-06 26.1 0.0 0.00015 21.5 0.0 2.3 1 1 0 2 2 2 2 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|385806075|ref|YP_005842473.1| - 0.0052 16.6 0.0 0.0073 16.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF447) DUF5497 PF17601.2 gi|385806075|ref|YP_005842473.1| - 0.055 13.8 0.2 0.1 12.9 0.2 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5497) NTP_transf_2 PF01909.23 gi|385806076|ref|YP_005842474.1| - 0.0027 18.0 0.1 0.0055 17.0 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SpoU_sub_bind PF08032.12 gi|385806076|ref|YP_005842474.1| - 0.12 12.7 0.2 1.9 8.8 0.1 2.5 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding tRNA_deacylase PF04414.12 gi|385806077|ref|YP_005842475.1| - 6.2e-61 205.5 0.1 7.4e-61 205.2 0.1 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Ac76 PF05814.11 gi|385806078|ref|YP_005842476.1| - 0.036 14.1 1.3 0.036 14.1 1.3 3.0 2 1 1 3 3 3 0 Orf76 (Ac76) DUF997 PF06196.12 gi|385806078|ref|YP_005842476.1| - 2.5 8.2 9.9 0.057 13.4 1.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF997) Peptidase_M32 PF02074.15 gi|385806079|ref|YP_005842477.1| - 2.8e-162 540.9 0.4 3.3e-162 540.6 0.4 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase SIS PF01380.22 gi|385806080|ref|YP_005842478.1| - 6.3e-45 152.2 1.3 4.1e-26 91.4 0.7 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|385806080|ref|YP_005842478.1| - 8.6e-21 74.5 0.0 1.6e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|385806080|ref|YP_005842478.1| - 4.8e-16 58.8 0.0 8.7e-16 58.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain bact-PGI_C PF10432.9 gi|385806080|ref|YP_005842478.1| - 0.02 14.9 0.0 0.064 13.3 0.0 1.8 1 1 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain GATase_4 PF13230.6 gi|385806080|ref|YP_005842478.1| - 0.086 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|385806080|ref|YP_005842478.1| - 0.11 12.5 0.1 0.3 11.1 0.1 1.9 1 0 0 1 1 1 0 SIS domain Hexapep PF00132.24 gi|385806081|ref|YP_005842479.1| - 6.3e-15 54.2 6.0 8.1e-07 28.5 0.2 5.0 3 1 3 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|385806081|ref|YP_005842479.1| - 9.3e-10 38.1 2.8 0.00056 19.6 0.0 4.4 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|385806081|ref|YP_005842479.1| - 0.0042 16.1 0.1 0.07 12.1 0.0 2.3 2 1 0 2 2 2 1 L-fucokinase DUF4954 PF16314.5 gi|385806081|ref|YP_005842479.1| - 0.01 14.0 0.1 0.02 13.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Pantoate_transf PF02548.15 gi|385806082|ref|YP_005842480.1| - 1.1e-108 362.5 0.1 1.3e-108 362.4 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|385806082|ref|YP_005842480.1| - 1.6e-05 24.5 0.6 8.4e-05 22.1 0.3 2.1 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase ApbA_C PF08546.11 gi|385806083|ref|YP_005842481.1| - 6.2e-32 110.4 0.1 9.1e-32 109.9 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|385806083|ref|YP_005842481.1| - 1.6e-11 44.0 0.1 3.5e-11 43.0 0.1 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF3198 PF11433.8 gi|385806083|ref|YP_005842481.1| - 0.13 12.2 0.4 0.86 9.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3198) Polysacc_deac_1 PF01522.21 gi|385806084|ref|YP_005842482.1| - 8.2e-05 22.5 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Novirhabdo_Nv PF05554.11 gi|385806084|ref|YP_005842482.1| - 0.16 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Viral hemorrhagic septicemia virus non-virion protein Miga PF10265.9 gi|385806084|ref|YP_005842482.1| - 0.24 10.4 0.2 0.35 9.8 0.2 1.1 1 0 0 1 1 1 0 Mitoguardin Glyco_tranf_2_3 PF13641.6 gi|385806085|ref|YP_005842483.1| - 2.9e-12 47.0 0.0 8.1e-09 35.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|385806085|ref|YP_005842483.1| - 3.9e-12 46.3 0.2 2.1e-06 27.7 0.1 2.4 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|385806085|ref|YP_005842483.1| - 5.7e-12 46.0 0.5 5.7e-12 46.0 0.5 1.9 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|385806085|ref|YP_005842483.1| - 5.5e-08 32.5 0.0 9.2e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Osmo_MPGsynth PF09488.10 gi|385806085|ref|YP_005842483.1| - 0.0098 14.6 0.2 0.014 14.1 0.2 1.2 1 0 0 1 1 1 1 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) Glyco_tranf_2_4 PF13704.6 gi|385806085|ref|YP_005842483.1| - 0.04 14.4 0.0 0.097 13.2 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 FAM199X PF15814.5 gi|385806085|ref|YP_005842483.1| - 0.11 11.5 0.4 0.17 10.9 0.4 1.2 1 0 0 1 1 1 0 Protein family FAM199X BRCT_2 PF16589.5 gi|385806085|ref|YP_005842483.1| - 0.39 11.2 2.8 1 9.8 0.8 2.3 1 1 1 2 2 2 0 BRCT domain, a BRCA1 C-terminus domain Aminotran_5 PF00266.19 gi|385806086|ref|YP_005842484.1| - 1e-140 468.9 0.2 1.2e-140 468.8 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|385806086|ref|YP_005842484.1| - 5e-09 35.9 0.1 7.7e-09 35.3 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|385806086|ref|YP_005842484.1| - 1.5e-08 34.2 0.1 8.8e-08 31.7 0.1 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|385806086|ref|YP_005842484.1| - 2e-07 29.9 0.2 3.7e-07 29.0 0.2 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|385806086|ref|YP_005842484.1| - 1.3e-06 27.9 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|385806086|ref|YP_005842484.1| - 8.8e-05 21.7 0.1 0.00016 20.8 0.1 1.4 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Met_gamma_lyase PF06838.11 gi|385806086|ref|YP_005842484.1| - 0.021 13.4 0.3 0.035 12.6 0.3 1.4 1 0 0 1 1 1 0 Methionine gamma-lyase Pyridoxal_deC PF00282.19 gi|385806086|ref|YP_005842484.1| - 0.033 12.9 0.0 0.071 11.8 0.0 1.7 1 1 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain TGT PF01702.18 gi|385806090|ref|YP_005842488.1| - 2.1e-67 227.7 0.0 3.1e-67 227.2 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|385806090|ref|YP_005842488.1| - 8.4e-05 22.5 0.2 0.0003 20.7 0.2 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF5591) DNA_Packaging_2 PF11123.8 gi|385806090|ref|YP_005842488.1| - 0.023 14.9 0.0 0.06 13.6 0.0 1.7 1 0 0 1 1 1 0 DNA packaging protein 40S_S4_C PF16121.5 gi|385806090|ref|YP_005842488.1| - 0.039 13.6 0.0 0.093 12.4 0.0 1.6 1 0 0 1 1 1 0 40S ribosomal protein S4 C-terminus AA_permease_2 PF13520.6 gi|385806092|ref|YP_005842490.1| - 6.7e-37 127.3 61.2 8.6e-37 127.0 61.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|385806092|ref|YP_005842490.1| - 1.2e-34 119.8 58.0 1.6e-34 119.3 58.0 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|385806092|ref|YP_005842490.1| - 3.8e-05 24.2 0.0 8.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Universal stress protein family DUF1106 PF06523.11 gi|385806092|ref|YP_005842490.1| - 0.029 14.4 0.8 0.1 12.7 0.8 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1106) YvrJ PF12841.7 gi|385806093|ref|YP_005842491.1| - 0.0035 16.8 2.0 0.0059 16.1 2.0 1.5 1 0 0 1 1 1 1 YvrJ protein family Helo_like_N PF17111.5 gi|385806093|ref|YP_005842491.1| - 0.0075 15.7 2.5 0.0077 15.6 1.3 1.6 1 1 1 2 2 2 1 Fungal N-terminal domain of STAND proteins SlyX PF04102.12 gi|385806093|ref|YP_005842491.1| - 0.009 16.6 0.9 0.009 16.6 0.9 2.2 1 1 1 2 2 2 1 SlyX SMC_Nse1 PF07574.13 gi|385806093|ref|YP_005842491.1| - 0.02 14.8 0.6 0.023 14.6 0.6 1.1 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex BLOC1_2 PF10046.9 gi|385806093|ref|YP_005842491.1| - 0.048 14.0 2.1 0.059 13.7 2.1 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|385806093|ref|YP_005842491.1| - 0.069 12.0 5.4 0.078 11.9 5.4 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein TMCO5 PF14992.6 gi|385806093|ref|YP_005842491.1| - 0.092 12.3 5.8 0.1 12.1 5.8 1.1 1 0 0 1 1 1 0 TMCO5 family Syntaxin-6_N PF09177.11 gi|385806093|ref|YP_005842491.1| - 0.096 13.3 1.0 0.11 13.0 1.0 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Spc24 PF08286.11 gi|385806093|ref|YP_005842491.1| - 0.19 12.0 4.1 0.13 12.5 1.1 1.9 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Fib_alpha PF08702.10 gi|385806093|ref|YP_005842491.1| - 0.21 11.7 2.1 0.32 11.2 2.1 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF730 PF05325.11 gi|385806093|ref|YP_005842491.1| - 0.34 10.9 2.2 0.38 10.8 2.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF730) DUF1664 PF07889.12 gi|385806093|ref|YP_005842491.1| - 0.38 10.8 2.8 0.49 10.4 2.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) ABC_tran_CTD PF16326.5 gi|385806093|ref|YP_005842491.1| - 1.8 8.9 9.4 0.46 10.8 3.1 2.1 1 1 1 2 2 2 0 ABC transporter C-terminal domain TPD52 PF04201.15 gi|385806093|ref|YP_005842491.1| - 5.2 6.7 7.3 8.4 6.0 7.3 1.4 1 1 0 1 1 1 0 Tumour protein D52 family RNA_pol_RpbG PF16992.5 gi|385806094|ref|YP_005842492.1| - 2.6e-15 56.5 0.5 3.1e-15 56.3 0.5 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G Lsm_C PF14894.6 gi|385806095|ref|YP_005842493.1| - 8.7e-27 92.7 0.1 8.7e-27 92.7 0.1 1.6 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|385806095|ref|YP_005842493.1| - 6.5e-14 51.4 0.0 1.4e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|385806095|ref|YP_005842493.1| - 7.4e-05 22.8 0.0 0.00018 21.6 0.0 1.7 1 1 0 1 1 1 1 Ataxin 2 SM domain RFX_DNA_binding PF02257.15 gi|385806095|ref|YP_005842493.1| - 0.0063 17.1 0.1 0.017 15.8 0.0 1.6 2 0 0 2 2 2 1 RFX DNA-binding domain CytadhesinP1 PF12378.8 gi|385806095|ref|YP_005842493.1| - 0.054 13.7 0.0 0.082 13.1 0.0 1.3 1 0 0 1 1 1 0 Trypsin-sensitive surface-exposed protein Hfq PF17209.3 gi|385806095|ref|YP_005842493.1| - 0.06 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Hfq protein Peripla_BP_2 PF01497.18 gi|385806096|ref|YP_005842494.1| - 1.6e-34 119.5 0.0 2.3e-34 119.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Rsd_AlgQ PF04353.13 gi|385806096|ref|YP_005842494.1| - 0.011 15.7 1.3 0.022 14.7 1.3 1.5 1 0 0 1 1 1 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DUF4446 PF14584.6 gi|385806096|ref|YP_005842494.1| - 0.019 14.9 2.8 0.036 14.0 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF1664 PF07889.12 gi|385806096|ref|YP_005842494.1| - 0.031 14.3 2.0 0.048 13.7 1.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|385806096|ref|YP_005842494.1| - 0.031 13.6 5.7 0.053 12.8 5.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Lectin_N PF03954.14 gi|385806096|ref|YP_005842494.1| - 0.048 13.4 2.8 0.11 12.2 2.8 1.6 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain 4HB_MCP_1 PF12729.7 gi|385806096|ref|YP_005842494.1| - 0.058 12.9 9.1 0.11 12.1 9.1 1.4 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction HAUS6_N PF14661.6 gi|385806096|ref|YP_005842494.1| - 0.12 11.9 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus BAR_3 PF16746.5 gi|385806096|ref|YP_005842494.1| - 0.12 12.0 3.4 0.22 11.2 3.4 1.3 1 0 0 1 1 1 0 BAR domain of APPL family Med9 PF07544.13 gi|385806096|ref|YP_005842494.1| - 0.2 11.7 3.4 0.44 10.7 3.4 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Phage_Mu_Gam PF07352.12 gi|385806096|ref|YP_005842494.1| - 0.25 11.3 0.7 0.5 10.3 0.4 1.5 1 1 0 1 1 1 0 Bacteriophage Mu Gam like protein SKA1 PF07160.12 gi|385806096|ref|YP_005842494.1| - 0.29 10.9 3.3 0.47 10.3 3.3 1.3 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 LOH1CR12 PF10158.9 gi|385806096|ref|YP_005842494.1| - 0.59 10.2 4.6 0.82 9.7 2.8 2.1 3 0 0 3 3 3 0 Tumour suppressor protein AI-2E_transport PF01594.16 gi|385806096|ref|YP_005842494.1| - 0.7 9.0 9.6 0.17 11.0 6.3 1.5 2 0 0 2 2 2 0 AI-2E family transporter NPV_P10 PF05531.12 gi|385806096|ref|YP_005842494.1| - 1.2 9.7 9.6 1.1 9.7 6.2 2.8 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DivIVA PF05103.13 gi|385806096|ref|YP_005842494.1| - 1.7 8.7 6.9 4.3 7.4 1.8 2.5 2 1 1 3 3 2 0 DivIVA protein DUF4763 PF15960.5 gi|385806096|ref|YP_005842494.1| - 2.1 7.6 6.2 3.5 6.9 6.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) DivIC PF04977.15 gi|385806096|ref|YP_005842494.1| - 2.6 7.9 4.9 5.4 6.9 0.5 2.5 1 1 1 2 2 2 0 Septum formation initiator FlxA PF14282.6 gi|385806096|ref|YP_005842494.1| - 5.6 7.0 19.5 23 5.0 19.5 2.0 1 1 0 1 1 1 0 FlxA-like protein DUF2232 PF09991.9 gi|385806096|ref|YP_005842494.1| - 8.2 5.5 7.8 1.9 7.6 4.4 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) FecCD PF01032.18 gi|385806097|ref|YP_005842495.1| - 7.9e-65 218.9 35.9 9.7e-65 218.6 35.9 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|385806098|ref|YP_005842496.1| - 1.7e-19 70.7 0.0 3.4e-19 69.7 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385806098|ref|YP_005842496.1| - 9.1e-10 38.8 2.2 0.00073 19.4 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385806098|ref|YP_005842496.1| - 3.4e-07 29.9 0.4 0.0012 18.4 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385806098|ref|YP_005842496.1| - 0.00027 21.5 0.6 0.00049 20.7 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|385806098|ref|YP_005842496.1| - 0.0019 17.8 0.0 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|385806098|ref|YP_005842496.1| - 0.0027 16.8 0.0 0.0042 16.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|385806098|ref|YP_005842496.1| - 0.0071 16.1 0.7 0.028 14.1 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|385806098|ref|YP_005842496.1| - 0.0085 15.8 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385806098|ref|YP_005842496.1| - 0.012 15.4 0.0 0.027 14.2 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|385806098|ref|YP_005842496.1| - 0.016 15.4 0.4 0.098 12.9 0.4 2.1 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|385806098|ref|YP_005842496.1| - 0.018 14.4 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|385806098|ref|YP_005842496.1| - 0.06 13.3 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|385806098|ref|YP_005842496.1| - 0.079 13.0 0.3 1 9.4 0.0 2.6 1 1 2 3 3 3 0 AAA domain TsaE PF02367.17 gi|385806098|ref|YP_005842496.1| - 0.083 12.9 1.4 0.32 11.0 1.0 1.9 1 1 1 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|385806098|ref|YP_005842496.1| - 0.087 13.2 0.0 0.22 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|385806098|ref|YP_005842496.1| - 0.09 12.5 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385806098|ref|YP_005842496.1| - 0.091 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Rad17 PF03215.15 gi|385806098|ref|YP_005842496.1| - 0.12 12.3 0.3 0.36 10.7 0.1 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|385806098|ref|YP_005842496.1| - 0.14 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|385806098|ref|YP_005842496.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA PF00004.29 gi|385806098|ref|YP_005842496.1| - 0.18 12.2 0.5 0.63 10.5 0.5 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|385806098|ref|YP_005842496.1| - 0.24 11.1 0.6 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Lactamase_B_2 PF12706.7 gi|385806099|ref|YP_005842497.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|385806099|ref|YP_005842497.1| - 0.0066 16.6 0.8 0.012 15.8 0.1 1.7 2 0 0 2 2 2 1 DNA repair metallo-beta-lactamase ApoA-II PF04711.13 gi|385806100|ref|YP_005842498.1| - 0.042 14.0 0.1 0.28 11.3 0.0 2.3 3 0 0 3 3 3 0 Apolipoprotein A-II (ApoA-II) ERCC4 PF02732.15 gi|385806101|ref|YP_005842499.1| - 5.4e-17 62.4 0.0 7.8e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|385806101|ref|YP_005842499.1| - 2.9e-10 40.1 0.1 4.9e-10 39.3 0.1 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385806101|ref|YP_005842499.1| - 2.5e-07 31.2 0.2 7.8e-07 29.6 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|385806101|ref|YP_005842499.1| - 0.00032 20.4 0.4 0.0014 18.4 0.1 2.4 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|385806101|ref|YP_005842499.1| - 0.099 12.5 0.0 2 8.3 0.0 2.8 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda 5_3_exonuc PF01367.20 gi|385806101|ref|YP_005842499.1| - 0.11 13.2 0.8 0.63 10.7 0.1 2.6 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold AARP2CN PF08142.12 gi|385806101|ref|YP_005842499.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 AARP2CN (NUC121) domain Sua5_yciO_yrdC PF01300.18 gi|385806102|ref|YP_005842500.1| - 1.7e-61 206.8 0.0 2.8e-61 206.1 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|385806102|ref|YP_005842500.1| - 8e-28 97.7 0.0 1.3e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding TPM_phosphatase PF04536.14 gi|385806102|ref|YP_005842500.1| - 0.063 13.5 0.1 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 TPM domain SPA PF08616.10 gi|385806102|ref|YP_005842500.1| - 0.16 11.9 0.1 0.5 10.3 0.0 1.8 2 0 0 2 2 2 0 Stabilization of polarity axis Radical_SAM PF04055.21 gi|385806103|ref|YP_005842501.1| - 4.1e-15 56.5 0.0 3.5e-14 53.5 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|385806103|ref|YP_005842501.1| - 1.1e-14 54.6 0.0 2.7e-14 53.2 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain Cpn60_TCP1 PF00118.24 gi|385806104|ref|YP_005842502.1| - 2.2e-179 597.2 17.2 2.8e-179 596.9 17.2 1.1 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF2710 PF10921.8 gi|385806104|ref|YP_005842502.1| - 0.027 14.9 0.0 1.9 8.9 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2710) HrcA_DNA-bdg PF03444.15 gi|385806106|ref|YP_005842504.1| - 4.5e-31 106.3 1.3 1.4e-30 104.8 0.4 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|385806106|ref|YP_005842504.1| - 3.3e-26 91.5 4.5 3e-13 50.0 2.1 2.7 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|385806106|ref|YP_005842504.1| - 9.8e-09 35.5 0.2 2.6e-08 34.1 0.2 1.8 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|385806106|ref|YP_005842504.1| - 0.0002 21.3 0.4 0.00057 19.8 0.4 1.8 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|385806106|ref|YP_005842504.1| - 0.00029 20.7 0.2 0.00063 19.7 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385806106|ref|YP_005842504.1| - 0.0038 17.0 0.0 0.0085 15.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|385806106|ref|YP_005842504.1| - 0.0093 15.5 1.7 0.032 13.8 1.7 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|385806106|ref|YP_005842504.1| - 0.015 15.3 0.0 0.17 12.0 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.19 gi|385806106|ref|YP_005842504.1| - 0.015 15.2 0.1 0.042 13.7 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|385806106|ref|YP_005842504.1| - 0.018 14.7 0.1 1.3 8.8 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|385806106|ref|YP_005842504.1| - 0.025 14.5 0.0 0.068 13.1 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|385806106|ref|YP_005842504.1| - 0.028 14.2 0.3 0.091 12.5 0.3 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|385806106|ref|YP_005842504.1| - 0.041 14.2 0.1 0.13 12.6 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor LAGLIDADG_WhiA PF14527.6 gi|385806106|ref|YP_005842504.1| - 0.044 13.9 0.2 0.21 11.7 0.0 2.2 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain Arc_PepC PF06819.11 gi|385806106|ref|YP_005842504.1| - 0.052 13.7 0.6 0.28 11.3 0.0 2.3 2 1 0 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain Dimerisation2 PF16864.5 gi|385806106|ref|YP_005842504.1| - 0.11 12.4 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain TusA PF01206.17 gi|385806106|ref|YP_005842504.1| - 0.13 12.1 0.0 6.2 6.7 0.0 3.0 2 1 1 3 3 3 0 Sulfurtransferase TusA PaaX PF07848.12 gi|385806106|ref|YP_005842504.1| - 0.13 12.5 0.0 2 8.7 0.0 2.6 2 0 0 2 2 2 0 PaaX-like protein adh_short_C2 PF13561.6 gi|385806107|ref|YP_005842505.1| - 8.7e-74 248.0 0.0 9.9e-74 247.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385806107|ref|YP_005842505.1| - 3.3e-61 206.2 0.1 3.8e-61 205.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|385806107|ref|YP_005842505.1| - 4.9e-16 59.2 0.0 7.2e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|385806107|ref|YP_005842505.1| - 0.0096 15.3 0.0 0.014 14.8 0.0 1.1 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) 3Beta_HSD PF01073.19 gi|385806107|ref|YP_005842505.1| - 0.042 12.8 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.18 gi|385806107|ref|YP_005842505.1| - 0.061 13.2 0.0 0.24 11.2 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PAC2 PF09754.9 gi|385806108|ref|YP_005842506.1| - 1.5e-34 119.9 0.0 1.8e-34 119.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family tRNA-Thr_ED PF08915.11 gi|385806108|ref|YP_005842506.1| - 0.11 12.6 0.0 2.7 8.1 0.0 2.2 2 0 0 2 2 2 0 Archaea-specific editing domain of threonyl-tRNA synthetase TGT_C2 PF14810.6 gi|385806109|ref|YP_005842507.1| - 2.2e-18 66.2 0.0 5.6e-18 64.8 0.0 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|385806109|ref|YP_005842507.1| - 3.1e-13 49.5 0.1 6.5e-13 48.5 0.1 1.5 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|385806109|ref|YP_005842507.1| - 0.014 15.6 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 UPF0113 PUA domain HTH_3 PF01381.22 gi|385806110|ref|YP_005842508.1| - 5.6e-05 23.1 0.1 0.0006 19.8 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix HTH_19 PF12844.7 gi|385806110|ref|YP_005842508.1| - 0.0001 22.3 0.1 0.00077 19.4 0.1 2.5 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|385806110|ref|YP_005842508.1| - 0.041 14.2 0.0 0.15 12.4 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|385806110|ref|YP_005842508.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA UbiD PF01977.16 gi|385806111|ref|YP_005842509.1| - 1.4e-79 267.9 0.0 1.6e-79 267.7 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RMI2 PF16100.5 gi|385806111|ref|YP_005842509.1| - 0.18 11.6 0.0 0.35 10.7 0.0 1.4 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 DUF521 PF04412.13 gi|385806112|ref|YP_005842510.1| - 3e-132 441.1 0.0 3.7e-132 440.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|385806113|ref|YP_005842511.1| - 1.4e-28 98.5 0.1 1.8e-28 98.1 0.1 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain CbiM PF01891.16 gi|385806114|ref|YP_005842512.1| - 1.4e-63 214.4 10.5 1.6e-63 214.3 10.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|385806114|ref|YP_005842512.1| - 0.00062 19.9 12.3 0.00062 19.9 12.3 2.8 1 1 2 3 3 3 1 ECF transporter, substrate-specific component Pam17 PF08566.10 gi|385806114|ref|YP_005842512.1| - 0.11 12.3 0.3 1.4 8.7 0.2 2.0 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 ABC2_membrane_5 PF13346.6 gi|385806114|ref|YP_005842512.1| - 2.7 7.5 16.6 1 8.8 9.8 2.2 2 0 0 2 2 2 0 ABC-2 family transporter protein PDGLE PF13190.6 gi|385806115|ref|YP_005842513.1| - 1.1e-07 31.7 0.1 1.8e-07 31.0 0.1 1.5 1 1 0 1 1 1 1 PDGLE domain Yip1 PF04893.17 gi|385806115|ref|YP_005842513.1| - 0.2 11.4 6.2 0.31 10.7 6.2 1.4 1 1 0 1 1 1 0 Yip1 domain Sigma_reg_N PF13800.6 gi|385806115|ref|YP_005842513.1| - 3.5 8.0 5.9 0.34 11.2 0.2 1.9 2 0 0 2 2 2 0 Sigma factor regulator N-terminal OppC_N PF12911.7 gi|385806115|ref|YP_005842513.1| - 7.1 6.7 8.7 1 9.4 0.3 2.2 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF1182 PF06681.13 gi|385806116|ref|YP_005842514.1| - 0.014 15.0 2.5 0.014 15.0 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1182) CbiQ PF02361.16 gi|385806116|ref|YP_005842514.1| - 0.072 12.7 15.4 0.11 12.1 12.6 2.5 1 1 0 1 1 1 0 Cobalt transport protein ABC_tran PF00005.27 gi|385806117|ref|YP_005842515.1| - 3.4e-31 108.6 0.0 4.6e-31 108.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385806117|ref|YP_005842515.1| - 7.7e-15 55.5 1.5 1.3e-06 28.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385806117|ref|YP_005842515.1| - 1.2e-08 34.7 1.0 3.3e-07 30.0 1.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385806117|ref|YP_005842515.1| - 1.1e-06 29.3 0.2 1.6e-06 28.8 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|385806117|ref|YP_005842515.1| - 3.1e-06 26.8 0.0 5.6e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|385806117|ref|YP_005842515.1| - 4.2e-05 23.4 0.7 0.00021 21.1 0.5 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|385806117|ref|YP_005842515.1| - 0.0014 18.7 0.0 0.0029 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|385806117|ref|YP_005842515.1| - 0.0014 18.6 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|385806117|ref|YP_005842515.1| - 0.0018 18.7 0.0 0.0028 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|385806117|ref|YP_005842515.1| - 0.0033 17.4 0.0 0.0058 16.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|385806117|ref|YP_005842515.1| - 0.0039 17.7 0.6 0.0087 16.6 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385806117|ref|YP_005842515.1| - 0.0052 16.5 0.0 0.0057 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|385806117|ref|YP_005842515.1| - 0.0053 15.9 0.0 0.0086 15.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.12 gi|385806117|ref|YP_005842515.1| - 0.0094 15.9 0.0 0.022 14.7 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.6 gi|385806117|ref|YP_005842515.1| - 0.012 15.8 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385806117|ref|YP_005842515.1| - 0.012 15.8 0.1 0.026 14.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|385806117|ref|YP_005842515.1| - 0.013 15.5 0.0 0.03 14.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|385806117|ref|YP_005842515.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|385806117|ref|YP_005842515.1| - 0.027 14.3 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RNA_helicase PF00910.22 gi|385806117|ref|YP_005842515.1| - 0.032 14.6 0.0 0.06 13.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_27 PF13514.6 gi|385806117|ref|YP_005842515.1| - 0.037 13.6 0.0 0.061 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|385806117|ref|YP_005842515.1| - 0.041 13.3 0.0 0.066 12.7 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein RsgA_GTPase PF03193.16 gi|385806117|ref|YP_005842515.1| - 0.045 13.6 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase MeaB PF03308.16 gi|385806117|ref|YP_005842515.1| - 0.057 12.4 0.0 0.088 11.8 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_ATPase PF09818.9 gi|385806117|ref|YP_005842515.1| - 0.076 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|385806117|ref|YP_005842515.1| - 0.086 11.5 0.0 0.098 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|385806117|ref|YP_005842515.1| - 0.086 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|385806117|ref|YP_005842515.1| - 0.09 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|385806117|ref|YP_005842515.1| - 0.1 12.9 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit dNK PF01712.19 gi|385806117|ref|YP_005842515.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Deoxynucleoside kinase cobW PF02492.19 gi|385806117|ref|YP_005842515.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|385806117|ref|YP_005842515.1| - 0.15 12.5 0.1 0.37 11.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|385806117|ref|YP_005842515.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MutS_V PF00488.21 gi|385806117|ref|YP_005842515.1| - 0.23 11.4 0.3 0.51 10.3 0.0 1.7 2 0 0 2 2 1 0 MutS domain V ArsA_ATPase PF02374.15 gi|385806119|ref|YP_005842517.1| - 1.4e-44 152.5 4.0 6.6e-44 150.3 4.0 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|385806119|ref|YP_005842517.1| - 1.3e-09 38.1 0.0 4e-09 36.6 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|385806119|ref|YP_005842517.1| - 5.7e-09 36.1 0.2 5.7e-09 36.1 0.2 1.8 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|385806119|ref|YP_005842517.1| - 5.6e-05 22.8 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|385806119|ref|YP_005842517.1| - 0.002 17.6 1.6 0.071 12.6 0.1 2.6 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase AAA_24 PF13479.6 gi|385806119|ref|YP_005842517.1| - 0.012 15.4 3.8 0.21 11.3 3.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385806119|ref|YP_005842517.1| - 0.03 14.9 0.8 0.085 13.4 0.0 2.3 3 1 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|385806119|ref|YP_005842517.1| - 0.04 13.6 1.7 0.12 12.0 0.1 2.4 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|385806119|ref|YP_005842517.1| - 0.046 13.9 0.0 0.089 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|385806119|ref|YP_005842517.1| - 0.058 13.2 0.8 2.2 8.0 0.1 2.6 2 1 0 2 2 2 0 AAA domain SRP1_TIP1 PF00660.17 gi|385806119|ref|YP_005842517.1| - 0.059 13.4 0.2 0.18 11.9 0.1 1.9 2 0 0 2 2 2 0 Seripauperin and TIP1 family ATP_bind_1 PF03029.17 gi|385806119|ref|YP_005842517.1| - 0.072 12.9 0.3 0.55 10.0 0.0 2.3 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|385806119|ref|YP_005842517.1| - 0.074 12.8 1.4 0.97 9.2 0.0 2.7 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Cortex-I_coil PF09304.10 gi|385806119|ref|YP_005842517.1| - 0.17 12.1 5.3 0.15 12.3 2.0 2.1 2 0 0 2 2 2 0 Cortexillin I, coiled coil AAA_30 PF13604.6 gi|385806119|ref|YP_005842517.1| - 0.18 11.5 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoU PF01895.19 gi|385806119|ref|YP_005842517.1| - 0.27 11.7 4.7 3.7 8.1 0.3 2.8 3 0 0 3 3 3 0 PhoU domain Flagellin_IN PF07196.13 gi|385806120|ref|YP_005842518.1| - 0.15 12.3 0.1 0.25 11.5 0.1 1.3 1 0 0 1 1 1 0 Flagellin hook IN motif CstA PF02554.14 gi|385806121|ref|YP_005842519.1| - 5.9e-105 351.2 26.9 1e-104 350.5 26.9 1.3 1 0 0 1 1 1 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|385806121|ref|YP_005842519.1| - 2.2e-23 82.8 4.4 2.2e-23 82.8 4.4 2.9 2 1 1 3 3 3 1 5TM C-terminal transporter carbon starvation CstA DUF872 PF05915.12 gi|385806122|ref|YP_005842520.1| - 0.02 15.1 0.2 0.023 14.8 0.2 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Beta-Casp PF10996.8 gi|385806123|ref|YP_005842521.1| - 1.7e-26 92.6 0.0 3.8e-26 91.5 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|385806123|ref|YP_005842521.1| - 1.4e-21 76.3 3.5 1.6e-18 66.4 0.2 3.0 3 0 0 3 3 3 2 KH domain RMMBL PF07521.12 gi|385806123|ref|YP_005842521.1| - 5.8e-16 58.2 0.1 1.3e-15 57.1 0.1 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|385806123|ref|YP_005842521.1| - 1.9e-15 56.8 0.0 1.5e-14 53.9 0.0 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385806123|ref|YP_005842521.1| - 3.2e-13 50.1 0.4 9.6e-13 48.6 0.4 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385806123|ref|YP_005842521.1| - 7.4e-10 38.7 0.0 1.4e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|385806123|ref|YP_005842521.1| - 0.006 16.5 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|385806123|ref|YP_005842521.1| - 0.015 15.1 1.0 0.015 15.1 1.0 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L38e PF01781.18 gi|385806124|ref|YP_005842522.1| - 0.0041 17.2 6.7 0.011 15.8 6.7 1.9 1 1 0 1 1 1 1 Ribosomal L38e protein family IL1_propep PF02394.16 gi|385806124|ref|YP_005842522.1| - 0.094 13.7 1.6 0.11 13.5 1.6 1.1 1 0 0 1 1 1 0 Interleukin-1 propeptide Beta-Casp PF10996.8 gi|385806125|ref|YP_005842523.1| - 3.9e-17 62.5 0.0 7.5e-17 61.6 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|385806125|ref|YP_005842523.1| - 8.8e-17 60.8 0.0 1.8e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|385806125|ref|YP_005842523.1| - 1.2e-10 41.1 0.0 2.1e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385806125|ref|YP_005842523.1| - 1.5e-08 34.9 0.4 8.2e-08 32.5 0.4 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385806125|ref|YP_005842523.1| - 9.4e-08 31.8 0.0 1.7e-07 30.9 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|385806125|ref|YP_005842523.1| - 0.052 13.4 0.1 0.11 12.3 0.1 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain NAC PF01849.18 gi|385806126|ref|YP_005842524.1| - 1e-15 57.4 1.3 1.8e-15 56.6 1.3 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|385806126|ref|YP_005842524.1| - 0.023 14.5 0.1 0.035 13.9 0.1 1.3 1 0 0 1 1 1 0 UBA-like domain Med21 PF11221.8 gi|385806126|ref|YP_005842524.1| - 0.03 14.6 1.5 0.036 14.3 1.5 1.2 1 0 0 1 1 1 0 Subunit 21 of Mediator complex AdoHcyase_NAD PF00670.21 gi|385806126|ref|YP_005842524.1| - 0.037 14.1 0.6 0.044 13.9 0.6 1.1 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UPF0004 PF00919.20 gi|385806126|ref|YP_005842524.1| - 0.046 13.8 0.2 0.1 12.7 0.2 1.5 1 1 0 1 1 1 0 Uncharacterized protein family UPF0004 HOIP-UBA PF16678.5 gi|385806126|ref|YP_005842524.1| - 0.058 13.4 1.0 0.13 12.2 1.1 1.7 1 1 0 1 1 1 0 HOIP UBA domain pair DUF1456 PF07308.13 gi|385806126|ref|YP_005842524.1| - 0.098 13.0 0.5 1.4 9.3 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1456) UBA PF00627.31 gi|385806126|ref|YP_005842524.1| - 0.11 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 UBA/TS-N domain Histone_HNS PF00816.21 gi|385806126|ref|YP_005842524.1| - 0.28 12.0 2.2 1.3 9.9 1.4 2.0 2 0 0 2 2 2 0 H-NS histone family CLP1_P PF16575.5 gi|385806127|ref|YP_005842525.1| - 8.1e-32 110.5 0.0 1.3e-31 109.9 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Torsin PF06309.11 gi|385806127|ref|YP_005842525.1| - 0.01 16.0 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 Torsin ATP_bind_1 PF03029.17 gi|385806127|ref|YP_005842525.1| - 0.014 15.2 0.2 0.026 14.3 0.2 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|385806127|ref|YP_005842525.1| - 0.067 12.9 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|385806127|ref|YP_005842525.1| - 0.09 12.5 0.9 0.24 11.1 0.3 2.0 1 1 1 2 2 2 0 AAA domain Peptidase_M29 PF02073.15 gi|385806127|ref|YP_005842525.1| - 0.13 11.0 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Thermophilic metalloprotease (M29) DEDD_Tnp_IS110 PF01548.17 gi|385806128|ref|YP_005842526.1| - 0.045 13.6 0.2 0.063 13.2 0.2 1.2 1 0 0 1 1 1 0 Transposase MinE PF03776.14 gi|385806128|ref|YP_005842526.1| - 0.047 13.7 0.7 0.1 12.6 0.5 1.6 1 1 0 1 1 1 0 Septum formation topological specificity factor MinE DUF460 PF04312.13 gi|385806128|ref|YP_005842526.1| - 0.072 12.8 0.2 0.19 11.4 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Rad51 PF08423.11 gi|385806129|ref|YP_005842527.1| - 1.5e-08 34.2 1.7 4.9e-06 26.0 1.7 3.3 1 1 0 1 1 1 1 Rad51 AAA_24 PF13479.6 gi|385806129|ref|YP_005842527.1| - 9.6e-08 32.0 0.0 1.3e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|385806129|ref|YP_005842527.1| - 3.4e-07 30.4 4.0 3.3e-05 23.9 4.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|385806129|ref|YP_005842527.1| - 3.1e-05 24.0 0.4 6e-05 23.1 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|385806129|ref|YP_005842527.1| - 4.4e-05 23.8 0.1 8.8e-05 22.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|385806129|ref|YP_005842527.1| - 7.9e-05 22.1 1.6 0.0012 18.2 1.6 2.1 1 1 0 1 1 1 1 KaiC NACHT PF05729.12 gi|385806129|ref|YP_005842527.1| - 0.00017 21.6 0.1 0.071 13.0 0.0 2.2 2 0 0 2 2 2 2 NACHT domain Bac_DnaA PF00308.18 gi|385806129|ref|YP_005842527.1| - 0.00039 20.3 0.2 0.00059 19.7 0.2 1.2 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_16 PF13191.6 gi|385806129|ref|YP_005842527.1| - 0.002 18.5 0.0 0.0025 18.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Zot PF05707.12 gi|385806129|ref|YP_005842527.1| - 0.0033 17.1 0.0 0.0038 16.9 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) TsaE PF02367.17 gi|385806129|ref|YP_005842527.1| - 0.0088 16.0 0.0 0.055 13.5 0.0 2.1 2 1 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|385806129|ref|YP_005842527.1| - 0.0088 15.6 0.2 0.16 11.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|385806129|ref|YP_005842527.1| - 0.012 15.7 0.5 0.035 14.1 0.5 1.9 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Ras PF00071.22 gi|385806129|ref|YP_005842527.1| - 0.019 14.6 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Ras family AAA PF00004.29 gi|385806129|ref|YP_005842527.1| - 0.02 15.3 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RecA PF00154.21 gi|385806129|ref|YP_005842527.1| - 0.022 14.3 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 recA bacterial DNA recombination protein RNA_helicase PF00910.22 gi|385806129|ref|YP_005842527.1| - 0.023 15.1 0.0 0.045 14.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|385806129|ref|YP_005842527.1| - 0.026 15.0 0.3 0.081 13.4 0.1 1.9 2 1 0 2 2 2 0 ABC transporter KRAB PF01352.27 gi|385806129|ref|YP_005842527.1| - 0.034 13.8 0.0 0.084 12.5 0.0 1.7 1 0 0 1 1 1 0 KRAB box KTI12 PF08433.10 gi|385806129|ref|YP_005842527.1| - 0.035 13.6 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.17 gi|385806129|ref|YP_005842527.1| - 0.045 13.5 0.3 0.083 12.7 0.1 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|385806129|ref|YP_005842527.1| - 0.078 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Elong_Iki1 PF10483.9 gi|385806129|ref|YP_005842527.1| - 0.079 12.4 0.1 0.087 12.3 0.1 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 Roc PF08477.13 gi|385806129|ref|YP_005842527.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|385806129|ref|YP_005842527.1| - 0.1 11.7 0.6 0.35 10.0 0.6 1.8 1 1 0 1 1 1 0 NB-ARC domain CobU PF02283.16 gi|385806129|ref|YP_005842527.1| - 0.15 11.7 0.0 0.39 10.3 0.0 1.8 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase MobB PF03205.14 gi|385806129|ref|YP_005842527.1| - 0.21 11.5 0.1 0.66 9.9 0.0 1.8 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2791 PF10923.8 gi|385806129|ref|YP_005842527.1| - 0.27 10.0 0.9 3.3 6.5 0.1 2.0 1 1 1 2 2 2 0 P-loop Domain of unknown function (DUF2791) GvpD PF07088.11 gi|385806129|ref|YP_005842527.1| - 0.29 9.7 2.6 1.3 7.5 2.6 1.9 1 1 0 1 1 1 0 GvpD gas vesicle protein CarS-like PF01864.17 gi|385806130|ref|YP_005842528.1| - 7e-36 123.8 5.8 9.9e-36 123.3 5.8 1.2 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|385806130|ref|YP_005842528.1| - 1.5e-06 28.2 1.3 2.2e-06 27.6 1.3 1.3 1 0 0 1 1 1 1 Cytidylyltransferase family Nop10p PF04135.12 gi|385806131|ref|YP_005842529.1| - 8.7e-25 86.5 1.7 1.1e-24 86.2 1.7 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.11 gi|385806131|ref|YP_005842529.1| - 0.0023 18.0 1.8 0.0032 17.5 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 gi|385806131|ref|YP_005842529.1| - 0.014 15.4 0.2 0.018 15.0 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons FANCL_C PF11793.8 gi|385806131|ref|YP_005842529.1| - 0.017 15.3 0.6 0.024 14.8 0.6 1.2 1 0 0 1 1 1 0 FANCL C-terminal domain DUF35_N PF12172.8 gi|385806131|ref|YP_005842529.1| - 0.019 14.8 1.4 0.032 14.1 1.4 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|385806131|ref|YP_005842529.1| - 0.12 12.4 0.3 0.14 12.2 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|385806131|ref|YP_005842529.1| - 0.17 11.3 7.1 3.5 7.2 7.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|385806131|ref|YP_005842529.1| - 1.4 8.9 8.5 7.7 6.6 1.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type EIF_2_alpha PF07541.12 gi|385806132|ref|YP_005842530.1| - 6.7e-22 77.8 3.1 3.8e-21 75.3 0.0 2.4 3 0 0 3 3 3 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|385806132|ref|YP_005842530.1| - 3.3e-14 53.0 1.6 5.8e-14 52.2 0.3 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DUF2247 PF10004.9 gi|385806132|ref|YP_005842530.1| - 0.0097 15.7 1.6 0.0097 15.7 1.6 2.2 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2247) Pox_polyA_pol_N PF12630.7 gi|385806132|ref|YP_005842530.1| - 0.025 14.9 0.9 0.025 14.9 0.9 1.8 2 0 0 2 2 2 0 Poxvirus poly(A) polymerase N-terminal domain DUF4325 PF14213.6 gi|385806132|ref|YP_005842530.1| - 2.3 8.0 6.0 1.5 8.5 0.3 3.2 3 0 0 3 3 3 0 STAS-like domain of unknown function (DUF4325) Ribosomal_S27e PF01667.17 gi|385806133|ref|YP_005842531.1| - 1.4e-21 75.9 1.5 1.6e-21 75.8 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|385806133|ref|YP_005842531.1| - 0.0014 17.9 1.4 0.087 12.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|385806133|ref|YP_005842531.1| - 0.0015 18.5 1.7 0.32 11.0 0.0 2.2 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain DUF3797 PF12677.7 gi|385806133|ref|YP_005842531.1| - 0.0044 16.9 0.2 0.03 14.2 0.2 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) TF_Zn_Ribbon PF08271.12 gi|385806133|ref|YP_005842531.1| - 0.013 15.0 0.4 0.022 14.3 0.4 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|385806133|ref|YP_005842531.1| - 0.014 15.7 0.1 0.017 15.5 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|385806133|ref|YP_005842531.1| - 0.026 14.5 1.4 0.051 13.6 1.4 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|385806133|ref|YP_005842531.1| - 0.032 14.3 0.0 0.036 14.1 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|385806133|ref|YP_005842531.1| - 0.033 13.8 1.5 0.83 9.4 0.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|385806133|ref|YP_005842531.1| - 0.038 14.1 1.1 0.11 12.6 1.2 1.7 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|385806133|ref|YP_005842531.1| - 0.038 13.7 0.4 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_N PF01194.17 gi|385806133|ref|YP_005842531.1| - 0.039 14.3 1.5 0.82 10.0 0.1 2.1 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit DZR PF12773.7 gi|385806133|ref|YP_005842531.1| - 0.048 13.7 0.4 0.094 12.8 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon PADR1 PF08063.12 gi|385806133|ref|YP_005842531.1| - 0.094 12.5 0.8 0.3 10.9 0.0 1.8 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-RRN7 PF11781.8 gi|385806133|ref|YP_005842531.1| - 0.11 12.2 1.1 3.5 7.4 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_RNApol_7kD PF03604.13 gi|385806133|ref|YP_005842531.1| - 0.16 11.7 4.2 3.5 7.4 4.2 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.18 gi|385806133|ref|YP_005842531.1| - 0.41 10.6 3.4 1.5 8.7 1.5 2.4 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.19 gi|385806134|ref|YP_005842532.1| - 1.1e-22 80.3 10.4 1.2e-22 80.2 10.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L44 SRCR_2 PF15494.6 gi|385806134|ref|YP_005842532.1| - 0.044 14.3 0.0 0.051 14.1 0.0 1.2 1 0 0 1 1 1 0 Scavenger receptor cysteine-rich domain PHD_4 PF16866.5 gi|385806134|ref|YP_005842532.1| - 0.076 13.1 0.0 0.088 12.9 0.0 1.1 1 0 0 1 1 1 0 PHD-finger RNA_POL_M_15KD PF02150.16 gi|385806134|ref|YP_005842532.1| - 0.12 12.3 0.2 0.2 11.5 0.2 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DNA_primase_S PF01896.19 gi|385806136|ref|YP_005842534.1| - 8.3e-18 65.0 0.0 2.1e-16 60.5 0.0 2.5 2 1 0 2 2 2 1 DNA primase small subunit TackOD1 PF18551.1 gi|385806136|ref|YP_005842534.1| - 0.054 13.2 0.2 0.088 12.5 0.2 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn_Tnp_IS91 PF14319.6 gi|385806136|ref|YP_005842534.1| - 0.13 12.3 1.2 0.27 11.3 1.2 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain RE_MamI PF09567.10 gi|385806136|ref|YP_005842534.1| - 0.14 11.8 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 MamI restriction endonuclease A2L_zn_ribbon PF08792.10 gi|385806136|ref|YP_005842534.1| - 1.5 8.6 4.9 0.66 9.8 0.9 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain PCNA_N PF00705.18 gi|385806137|ref|YP_005842535.1| - 5.8e-13 48.7 0.0 1.2e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|385806137|ref|YP_005842535.1| - 7.3e-07 29.4 0.1 1e-05 25.7 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|385806137|ref|YP_005842535.1| - 0.00015 20.9 0.2 0.27 10.2 0.1 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|385806137|ref|YP_005842535.1| - 0.0039 16.7 0.0 0.022 14.2 0.0 2.0 1 1 0 1 1 1 1 Rad9 DNA_pol3_beta PF00712.19 gi|385806137|ref|YP_005842535.1| - 0.014 15.5 0.3 0.035 14.2 0.2 1.7 1 1 1 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain TFIIS_C PF01096.18 gi|385806138|ref|YP_005842536.1| - 2.1e-22 78.7 8.9 1.9e-21 75.6 3.9 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|385806138|ref|YP_005842536.1| - 4.1e-07 29.9 3.2 0.00015 21.6 0.8 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|385806138|ref|YP_005842536.1| - 5.7e-06 25.7 5.5 0.0029 17.1 0.4 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|385806138|ref|YP_005842536.1| - 1.7e-05 24.4 9.8 0.13 12.1 0.2 3.4 3 0 0 3 3 3 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|385806138|ref|YP_005842536.1| - 6e-05 22.9 4.6 0.16 11.9 0.1 3.0 3 0 0 3 3 3 2 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|385806138|ref|YP_005842536.1| - 8.1e-05 22.7 4.1 2.9 8.1 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|385806138|ref|YP_005842536.1| - 0.00012 21.7 7.4 0.036 13.8 0.1 3.3 3 0 0 3 3 3 1 A2L zinc ribbon domain Nudix_N_2 PF14803.6 gi|385806138|ref|YP_005842536.1| - 0.00048 20.0 6.1 0.24 11.3 2.9 3.0 2 1 0 2 2 2 2 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|385806138|ref|YP_005842536.1| - 0.00063 19.6 8.0 1 9.3 0.2 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|385806138|ref|YP_005842536.1| - 0.00068 19.5 7.6 0.56 10.2 0.4 3.6 3 1 0 3 3 3 1 zinc-ribbon domain DUF2387 PF09526.10 gi|385806138|ref|YP_005842536.1| - 0.0008 19.5 5.7 0.4 10.8 1.7 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.11 gi|385806138|ref|YP_005842536.1| - 0.0012 18.7 4.2 0.24 11.3 1.7 2.6 2 1 1 3 3 3 1 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|385806138|ref|YP_005842536.1| - 0.0016 18.5 7.9 0.55 10.4 0.3 3.2 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|385806138|ref|YP_005842536.1| - 0.0028 17.7 3.5 0.24 11.5 1.0 2.4 2 1 0 2 2 2 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|385806138|ref|YP_005842536.1| - 0.003 17.9 7.1 0.092 13.1 7.1 2.2 1 1 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_13 PF09855.9 gi|385806138|ref|YP_005842536.1| - 0.0054 16.9 9.1 1.5 9.0 0.1 3.2 3 0 0 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|385806138|ref|YP_005842536.1| - 0.0059 16.0 13.4 0.24 10.9 0.5 3.2 3 0 0 3 3 3 2 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|385806138|ref|YP_005842536.1| - 0.022 14.9 3.7 0.49 10.6 1.5 2.8 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Baculo_LEF5_C PF11792.8 gi|385806138|ref|YP_005842536.1| - 0.03 14.0 4.5 0.25 11.1 0.0 3.0 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-C4_Topoisom PF01396.19 gi|385806138|ref|YP_005842536.1| - 0.03 14.1 4.6 1.6 8.6 0.0 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger PhnA_Zn_Ribbon PF08274.12 gi|385806138|ref|YP_005842536.1| - 0.033 14.2 7.5 0.22 11.5 0.1 2.9 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.8 gi|385806138|ref|YP_005842536.1| - 0.035 14.0 3.4 24 4.9 0.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|385806138|ref|YP_005842536.1| - 0.035 13.8 7.3 4.8 7.0 0.0 3.4 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-ACC PF17848.1 gi|385806138|ref|YP_005842536.1| - 0.036 14.1 11.4 1.7 8.8 1.6 3.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-tcix PF14952.6 gi|385806138|ref|YP_005842536.1| - 0.04 13.5 6.8 8.7 6.1 0.1 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Methyltransf_13 PF08421.11 gi|385806138|ref|YP_005842536.1| - 0.048 13.9 2.5 26 5.2 0.0 3.1 2 1 0 3 3 3 0 Putative zinc binding domain Zn_ribbon_SprT PF17283.2 gi|385806138|ref|YP_005842536.1| - 0.048 13.6 12.3 0.26 11.2 0.1 3.1 2 1 0 2 2 2 0 SprT-like zinc ribbon domain HalOD2 PF18547.1 gi|385806138|ref|YP_005842536.1| - 0.048 13.6 2.3 6.4 6.8 0.2 3.0 3 0 0 3 3 3 0 Halobacterial output domain 2 HypA PF01155.19 gi|385806138|ref|YP_005842536.1| - 0.053 13.5 2.7 1 9.4 2.9 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Terminase_GpA PF05876.12 gi|385806138|ref|YP_005842536.1| - 0.06 11.9 2.7 0.097 11.2 1.0 1.8 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf_C2H2_10 PF18414.1 gi|385806138|ref|YP_005842536.1| - 0.065 12.8 10.9 0.68 9.5 0.3 3.4 3 0 0 3 3 3 0 C2H2 type zinc-finger DpnI PF06044.12 gi|385806138|ref|YP_005842536.1| - 0.066 12.8 4.9 0.16 11.6 0.8 2.1 1 1 1 2 2 2 0 Dam-replacing family C1_2 PF03107.16 gi|385806138|ref|YP_005842536.1| - 0.067 13.5 4.3 5.8 7.3 0.1 2.7 3 0 0 3 3 2 0 C1 domain RecR PF02132.15 gi|385806138|ref|YP_005842536.1| - 0.087 12.4 2.8 2.1 8.0 0.1 2.9 3 0 0 3 3 3 0 RecR protein Zn_Tnp_IS91 PF14319.6 gi|385806138|ref|YP_005842536.1| - 0.091 12.8 3.2 11 6.1 0.5 2.9 2 1 1 3 3 3 0 Transposase zinc-binding domain Rubredoxin PF00301.20 gi|385806138|ref|YP_005842536.1| - 0.11 12.5 10.4 7.5 6.7 0.1 3.3 3 0 0 3 3 3 0 Rubredoxin DUF1610 PF07754.11 gi|385806138|ref|YP_005842536.1| - 0.13 12.3 10.0 1.4 8.9 0.6 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Zn_ribbon_recom PF13408.6 gi|385806138|ref|YP_005842536.1| - 0.13 12.8 5.3 3.5 8.2 3.1 2.5 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain YhfH PF14149.6 gi|385806138|ref|YP_005842536.1| - 0.13 12.3 3.6 27 4.9 0.1 3.3 3 0 0 3 3 3 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|385806138|ref|YP_005842536.1| - 0.13 11.9 4.3 14 5.5 0.1 3.5 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|385806138|ref|YP_005842536.1| - 0.14 12.5 2.6 7 7.0 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon zf-TFIIB PF13453.6 gi|385806138|ref|YP_005842536.1| - 0.15 11.5 9.2 4.4 6.7 0.1 2.9 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-ZPR1 PF03367.13 gi|385806138|ref|YP_005842536.1| - 0.17 11.8 0.9 7.2 6.4 0.2 2.2 2 0 0 2 2 2 0 ZPR1 zinc-finger domain zf-H2C2_2 PF13465.6 gi|385806138|ref|YP_005842536.1| - 0.25 11.8 15.4 1.7 9.2 1.0 3.4 3 1 0 3 3 3 0 Zinc-finger double domain Ribosomal_S27e PF01667.17 gi|385806138|ref|YP_005842536.1| - 0.26 11.0 3.5 3.6 7.4 1.0 2.9 2 1 0 2 2 2 0 Ribosomal protein S27 DUF3797 PF12677.7 gi|385806138|ref|YP_005842536.1| - 0.27 11.1 16.4 0.14 12.1 6.4 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF3268 PF11672.8 gi|385806138|ref|YP_005842536.1| - 0.29 11.5 5.4 11 6.4 2.2 2.2 2 0 0 2 2 2 0 zinc-finger-containing domain HscB_4_cys PF18256.1 gi|385806138|ref|YP_005842536.1| - 0.3 10.9 2.8 21 5.0 0.0 3.0 3 0 0 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif tRNA-synt_1f PF01921.18 gi|385806138|ref|YP_005842536.1| - 0.33 9.8 2.9 2.5 6.9 0.1 2.0 1 1 1 2 2 2 0 tRNA synthetases class I (K) eIF-5_eIF-2B PF01873.17 gi|385806138|ref|YP_005842536.1| - 0.33 10.8 4.2 0.14 12.0 0.7 2.0 1 1 1 2 2 2 0 Domain found in IF2B/IF5 Acetone_carb_G PF08882.11 gi|385806138|ref|YP_005842536.1| - 0.41 10.8 0.2 0.41 10.8 0.2 2.6 1 1 1 3 3 3 0 Acetone carboxylase gamma subunit Ribosomal_L32p PF01783.23 gi|385806138|ref|YP_005842536.1| - 0.42 10.9 3.0 32 4.9 0.1 3.0 3 0 0 3 3 3 0 Ribosomal L32p protein family zf-RING_7 PF02591.15 gi|385806138|ref|YP_005842536.1| - 0.47 10.7 6.8 2.2 8.6 0.5 3.0 3 1 0 3 3 3 0 C4-type zinc ribbon domain Zn_Tnp_IS1 PF03811.13 gi|385806138|ref|YP_005842536.1| - 0.73 9.6 5.6 6.4 6.6 2.4 2.8 2 1 0 2 2 2 0 InsA N-terminal domain zf_UBZ PF18439.1 gi|385806138|ref|YP_005842536.1| - 0.79 9.4 8.3 4.4 7.0 0.1 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_10 PF10058.9 gi|385806138|ref|YP_005842536.1| - 0.81 9.5 8.6 5.8 6.7 0.1 3.1 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD PF00628.29 gi|385806138|ref|YP_005842536.1| - 0.89 9.5 5.3 22 5.1 1.9 2.8 2 1 0 2 2 2 0 PHD-finger Baculo_ME53 PF06061.11 gi|385806138|ref|YP_005842536.1| - 1.2 8.3 8.6 1.4 8.1 3.7 2.2 1 1 1 2 2 2 0 Baculoviridae ME53 FYDLN_acid PF09538.10 gi|385806138|ref|YP_005842536.1| - 1.3 9.8 4.8 5.2 7.8 0.2 2.6 1 1 2 3 3 2 0 Protein of unknown function (FYDLN_acid) zf-Mss51 PF13824.6 gi|385806138|ref|YP_005842536.1| - 1.3 9.1 10.4 8.3 6.6 0.7 3.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|385806138|ref|YP_005842536.1| - 1.7 8.5 13.9 2.4 8.0 0.4 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain zf-ISL3 PF14690.6 gi|385806138|ref|YP_005842536.1| - 1.7 9.3 7.9 7.1 7.4 0.7 3.0 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_KTR PF14205.6 gi|385806138|ref|YP_005842536.1| - 1.9 8.3 0.0 1.9 8.3 0.0 2.6 3 0 0 3 3 2 0 Cysteine-rich KTR Desulfoferrod_N PF06397.12 gi|385806138|ref|YP_005842536.1| - 2 8.1 11.0 3.5 7.3 0.3 3.2 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_15 PF17032.5 gi|385806138|ref|YP_005842536.1| - 2.2 9.1 7.4 7.7 7.3 1.8 2.6 1 1 1 2 2 2 0 zinc-ribbon family CpXC PF14353.6 gi|385806138|ref|YP_005842536.1| - 3.5 7.7 8.8 4.2 7.4 0.2 3.0 1 1 0 2 2 2 0 CpXC protein ADK_lid PF05191.14 gi|385806138|ref|YP_005842536.1| - 3.8 7.6 10.1 11 6.1 0.1 3.0 2 1 0 2 2 2 0 Adenylate kinase, active site lid DUF2719 PF10891.8 gi|385806138|ref|YP_005842536.1| - 5.1 7.1 8.2 11 6.1 0.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2719) zf-C2H2_4 PF13894.6 gi|385806138|ref|YP_005842536.1| - 7.1 7.8 8.5 44 5.3 0.5 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger RNA_pol_L_2 PF13656.6 gi|385806140|ref|YP_005842538.1| - 2.8e-22 78.2 0.1 3.6e-22 77.9 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|385806140|ref|YP_005842538.1| - 2.7e-08 33.1 0.0 4.5e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.9 gi|385806141|ref|YP_005842539.1| - 7.4e-44 149.6 0.8 8.8e-44 149.3 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) OrfB_Zn_ribbon PF07282.11 gi|385806142|ref|YP_005842540.1| - 0.00012 21.9 0.5 0.00019 21.3 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain ECR1_N PF14382.6 gi|385806142|ref|YP_005842540.1| - 0.00015 21.5 0.0 0.0025 17.6 0.0 2.7 3 0 0 3 3 3 1 Exosome complex exonuclease RRP4 N-terminal region zinc_ribbon_4 PF13717.6 gi|385806142|ref|YP_005842540.1| - 0.0053 16.6 0.6 0.79 9.7 0.1 2.6 2 0 0 2 2 2 1 zinc-ribbon domain S1 PF00575.23 gi|385806142|ref|YP_005842540.1| - 0.0055 17.0 0.0 0.016 15.5 0.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain HypA PF01155.19 gi|385806142|ref|YP_005842540.1| - 0.0065 16.5 0.1 0.01 15.9 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|385806142|ref|YP_005842540.1| - 0.019 14.6 1.2 0.031 13.9 1.2 1.3 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|385806142|ref|YP_005842540.1| - 0.026 14.7 0.8 0.05 13.7 0.8 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|385806142|ref|YP_005842540.1| - 0.032 14.2 1.3 0.054 13.5 1.3 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type EXOSC1 PF10447.9 gi|385806142|ref|YP_005842540.1| - 0.043 14.4 0.1 10 6.8 0.1 2.4 1 1 1 2 2 2 0 Exosome component EXOSC1/CSL4 Auto_anti-p27 PF06677.12 gi|385806142|ref|YP_005842540.1| - 0.045 13.9 1.3 0.075 13.2 1.3 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Med26 PF08711.11 gi|385806142|ref|YP_005842540.1| - 0.064 13.3 0.2 0.28 11.2 0.0 2.0 2 0 0 2 2 2 0 TFIIS helical bundle-like domain zf-ribbon_3 PF13248.6 gi|385806142|ref|YP_005842540.1| - 0.068 12.6 6.0 0.58 9.6 6.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|385806142|ref|YP_005842540.1| - 0.08 13.0 0.4 0.13 12.3 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|385806142|ref|YP_005842540.1| - 0.085 13.0 0.2 0.22 11.7 0.2 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS91 PF14319.6 gi|385806142|ref|YP_005842540.1| - 0.17 11.9 0.3 0.28 11.2 0.3 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain A2L_zn_ribbon PF08792.10 gi|385806142|ref|YP_005842540.1| - 0.2 11.4 2.2 1.5 8.6 2.2 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|385806142|ref|YP_005842540.1| - 0.44 10.1 3.4 36 4.0 0.1 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|385806142|ref|YP_005842540.1| - 0.67 9.7 6.9 8.1 6.3 2.1 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-ACC PF17848.1 gi|385806142|ref|YP_005842540.1| - 1.1 9.4 5.2 3.2 7.9 0.6 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Methyltransf_25 PF13649.6 gi|385806143|ref|YP_005842541.1| - 2.2e-08 34.7 0.0 4e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|385806143|ref|YP_005842541.1| - 3.2e-07 30.0 0.0 4.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|385806143|ref|YP_005842541.1| - 5.1e-07 30.3 0.0 9.6e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385806143|ref|YP_005842541.1| - 1.5e-06 28.1 0.0 2.1e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|385806143|ref|YP_005842541.1| - 1.8e-05 24.4 0.0 2.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.19 gi|385806143|ref|YP_005842541.1| - 0.00012 21.9 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|385806143|ref|YP_005842541.1| - 0.0032 17.2 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.13 gi|385806143|ref|YP_005842541.1| - 0.0034 16.8 0.1 0.0048 16.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_3 PF01596.17 gi|385806143|ref|YP_005842541.1| - 0.024 13.8 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_15 PF09445.10 gi|385806143|ref|YP_005842541.1| - 0.028 14.0 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|385806143|ref|YP_005842541.1| - 0.19 11.6 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Diphthamide_syn PF01866.17 gi|385806144|ref|YP_005842542.1| - 1e-81 274.7 0.0 1.3e-81 274.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein CitMHS PF03600.16 gi|385806145|ref|YP_005842543.1| - 4.4e-32 111.5 28.6 1.6e-29 103.0 26.9 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|385806145|ref|YP_005842543.1| - 1.5e-05 24.3 27.6 0.0073 15.4 11.2 2.9 1 1 1 2 2 2 2 Sodium:sulfate symporter transmembrane region Ribosomal_L16 PF00252.18 gi|385806146|ref|YP_005842544.1| - 1.1e-33 116.0 0.0 1.3e-33 115.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Aminotran_1_2 PF00155.21 gi|385806147|ref|YP_005842545.1| - 9e-45 153.4 0.0 1e-44 153.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|385806147|ref|YP_005842545.1| - 3.8e-07 29.3 0.0 2.1e-06 26.8 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|385806149|ref|YP_005842547.1| - 1.7e-102 343.1 0.0 2.1e-102 342.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|385806149|ref|YP_005842547.1| - 0.22 10.6 0.0 0.37 9.9 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class I and II Ribosomal_L21e PF01157.18 gi|385806150|ref|YP_005842548.1| - 2.9e-35 120.2 1.2 3.2e-35 120.0 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|385806151|ref|YP_005842549.1| - 2.8e-07 30.9 4.1 4.7e-07 30.2 4.1 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb4 mTERF PF02536.14 gi|385806151|ref|YP_005842549.1| - 0.0059 15.6 1.2 0.0062 15.5 1.2 1.0 1 0 0 1 1 1 1 mTERF IL31 PF15209.6 gi|385806151|ref|YP_005842549.1| - 0.011 15.5 0.3 0.013 15.2 0.3 1.2 1 0 0 1 1 1 0 Interleukin 31 Nucleolin_bd PF16725.5 gi|385806151|ref|YP_005842549.1| - 0.037 13.7 0.4 0.29 10.8 0.0 2.2 2 0 0 2 2 2 0 Nucleolin binding domain NPA PF16469.5 gi|385806151|ref|YP_005842549.1| - 0.057 14.0 0.9 0.087 13.4 0.9 1.5 1 1 0 1 1 1 0 Nematode polyprotein allergen ABA-1 Radical_SAM PF04055.21 gi|385806151|ref|YP_005842549.1| - 0.077 13.4 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 Radical SAM superfamily DUF655 PF04919.12 gi|385806152|ref|YP_005842550.1| - 8e-57 192.1 0.2 9.8e-57 191.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|385806152|ref|YP_005842550.1| - 0.0016 18.7 0.1 0.0049 17.1 0.1 1.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|385806152|ref|YP_005842550.1| - 0.18 12.4 0.8 2.9 8.6 0.4 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|385806153|ref|YP_005842551.1| - 2e-35 122.2 1.1 2.3e-35 122.0 1.1 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|385806153|ref|YP_005842551.1| - 0.005 16.3 0.3 0.011 15.2 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 gi|385806153|ref|YP_005842551.1| - 0.057 13.2 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|385806154|ref|YP_005842552.1| - 8.3e-11 41.8 0.0 1.1e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|385806154|ref|YP_005842552.1| - 1.3e-09 37.8 0.0 2.9e-08 33.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|385806154|ref|YP_005842552.1| - 1.4e-05 24.8 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|385806154|ref|YP_005842552.1| - 0.0007 19.5 0.0 0.0018 18.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|385806154|ref|YP_005842552.1| - 0.003 17.4 0.0 0.013 15.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|385806154|ref|YP_005842552.1| - 0.0062 16.3 0.0 0.0088 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|385806154|ref|YP_005842552.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385806154|ref|YP_005842552.1| - 0.028 15.1 0.0 0.072 13.8 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|385806154|ref|YP_005842552.1| - 0.083 12.6 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Lysine methyltransferase TehB PF03848.14 gi|385806154|ref|YP_005842552.1| - 0.085 12.3 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|385806154|ref|YP_005842552.1| - 0.16 10.9 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) SpoU_methylase PF00588.19 gi|385806155|ref|YP_005842553.1| - 2.3e-30 105.6 0.0 3.5e-30 105.0 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family THUMP PF02926.17 gi|385806156|ref|YP_005842554.1| - 8.2e-07 29.2 1.0 8.2e-07 29.2 1.0 2.0 2 0 0 2 2 2 1 THUMP domain DUF1456 PF07308.13 gi|385806156|ref|YP_005842554.1| - 0.034 14.5 0.0 0.81 10.1 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1456) DUF3198 PF11433.8 gi|385806156|ref|YP_005842554.1| - 0.056 13.3 0.7 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3198) DUF4428 PF14471.6 gi|385806156|ref|YP_005842554.1| - 0.16 11.9 2.2 12 5.9 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) SRP54 PF00448.22 gi|385806157|ref|YP_005842555.1| - 2.4e-71 239.4 0.1 3.5e-71 238.9 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|385806157|ref|YP_005842555.1| - 3e-24 85.5 0.6 3e-24 85.5 0.6 2.9 4 0 0 4 4 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|385806157|ref|YP_005842555.1| - 2.4e-18 66.1 0.3 2.4e-16 59.7 0.0 3.1 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|385806157|ref|YP_005842555.1| - 9.8e-06 25.6 0.0 3e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|385806157|ref|YP_005842555.1| - 4.1e-05 23.2 0.2 0.00053 19.6 0.2 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|385806157|ref|YP_005842555.1| - 4.6e-05 23.2 0.1 0.00015 21.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|385806157|ref|YP_005842555.1| - 7.2e-05 22.1 0.0 0.00012 21.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin ResIII PF04851.15 gi|385806157|ref|YP_005842555.1| - 0.00029 20.9 1.0 0.0024 17.9 0.1 2.6 1 1 2 3 3 3 1 Type III restriction enzyme, res subunit AAA_33 PF13671.6 gi|385806157|ref|YP_005842555.1| - 0.00034 20.8 0.0 0.00072 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|385806157|ref|YP_005842555.1| - 0.00043 20.2 0.0 0.00096 19.1 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|385806157|ref|YP_005842555.1| - 0.00048 20.5 0.0 0.0012 19.2 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.20 gi|385806157|ref|YP_005842555.1| - 0.00052 19.9 0.1 0.0015 18.5 0.0 1.7 2 0 0 2 2 1 1 Adenylylsulphate kinase AAA_22 PF13401.6 gi|385806157|ref|YP_005842555.1| - 0.00057 20.2 0.0 0.0046 17.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|385806157|ref|YP_005842555.1| - 0.00093 18.3 0.0 0.0021 17.1 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|385806157|ref|YP_005842555.1| - 0.0016 18.5 0.3 0.0092 16.1 0.2 2.3 2 1 0 2 2 1 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|385806157|ref|YP_005842555.1| - 0.0037 17.8 0.0 0.0098 16.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|385806157|ref|YP_005842555.1| - 0.0039 16.6 0.1 0.013 14.9 0.1 1.9 1 1 0 1 1 1 1 KaiC AAA PF00004.29 gi|385806157|ref|YP_005842555.1| - 0.0045 17.4 0.1 0.03 14.7 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ParA PF10609.9 gi|385806157|ref|YP_005842555.1| - 0.0071 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_24 PF13479.6 gi|385806157|ref|YP_005842555.1| - 0.0074 16.0 0.2 0.035 13.8 0.0 2.3 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|385806157|ref|YP_005842555.1| - 0.012 15.6 1.4 0.11 12.4 0.0 2.8 3 0 0 3 3 3 0 NTPase AAA_17 PF13207.6 gi|385806157|ref|YP_005842555.1| - 0.014 15.8 3.2 0.029 14.8 0.1 2.7 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|385806157|ref|YP_005842555.1| - 0.014 15.6 0.0 0.033 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain 6PF2K PF01591.18 gi|385806157|ref|YP_005842555.1| - 0.018 14.4 0.0 0.039 13.2 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_5 PF07728.14 gi|385806157|ref|YP_005842555.1| - 0.024 14.7 0.0 0.061 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|385806157|ref|YP_005842555.1| - 0.045 13.4 0.0 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Thymidylate kinase AAA_31 PF13614.6 gi|385806157|ref|YP_005842555.1| - 0.046 13.6 0.0 0.14 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|385806157|ref|YP_005842555.1| - 0.048 13.5 0.0 5.1 6.9 0.0 2.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop G-alpha PF00503.20 gi|385806157|ref|YP_005842555.1| - 0.052 12.7 0.0 0.18 10.9 0.0 1.9 2 0 0 2 2 2 0 G-protein alpha subunit VirE PF05272.11 gi|385806157|ref|YP_005842555.1| - 0.059 13.1 0.1 0.69 9.6 0.0 2.2 2 0 0 2 2 2 0 Virulence-associated protein E KAP_NTPase PF07693.14 gi|385806157|ref|YP_005842555.1| - 0.059 12.6 0.1 0.084 12.1 0.1 1.3 1 0 0 1 1 1 0 KAP family P-loop domain KTI12 PF08433.10 gi|385806157|ref|YP_005842555.1| - 0.067 12.6 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PduV-EutP PF10662.9 gi|385806157|ref|YP_005842555.1| - 0.12 12.1 0.1 6 6.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation CdiI_2 PF18593.1 gi|385806157|ref|YP_005842555.1| - 0.14 12.8 0.1 0.67 10.6 0.0 2.2 2 0 0 2 2 1 0 CdiI immunity protein MipZ PF09140.11 gi|385806157|ref|YP_005842555.1| - 0.14 11.4 0.0 2.5 7.3 0.0 2.4 1 1 0 1 1 1 0 ATPase MipZ NACHT PF05729.12 gi|385806157|ref|YP_005842555.1| - 0.16 11.9 0.1 0.32 10.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|385806157|ref|YP_005842555.1| - 0.7 10.4 3.8 8 6.9 1.4 2.7 2 1 0 2 2 1 0 AAA domain eIF-5a PF01287.20 gi|385806158|ref|YP_005842556.1| - 3.3e-07 30.3 0.1 5.7e-07 29.6 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|385806158|ref|YP_005842556.1| - 9.1e-05 22.4 0.1 0.00017 21.5 0.1 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|385806158|ref|YP_005842556.1| - 0.0066 16.5 0.3 0.014 15.4 0.3 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain ASCH PF04266.14 gi|385806159|ref|YP_005842557.1| - 0.001 19.7 0.0 0.0013 19.3 0.0 1.4 1 1 0 1 1 1 1 ASCH domain DUF3850 PF12961.7 gi|385806159|ref|YP_005842557.1| - 0.025 14.6 0.0 0.053 13.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3850) Spermine_synth PF01564.17 gi|385806160|ref|YP_005842558.1| - 1e-53 181.5 0.0 1.6e-53 181.0 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_31 PF13847.6 gi|385806160|ref|YP_005842558.1| - 7.6e-06 25.8 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synt_N PF17284.2 gi|385806160|ref|YP_005842558.1| - 1.6e-05 24.7 0.0 3.8e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|385806160|ref|YP_005842558.1| - 2.4e-05 25.0 0.0 4.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|385806160|ref|YP_005842558.1| - 0.00013 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|385806160|ref|YP_005842558.1| - 0.00025 21.7 0.0 0.00055 20.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|385806160|ref|YP_005842558.1| - 0.00026 20.3 0.0 0.00038 19.8 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_30 PF05430.11 gi|385806160|ref|YP_005842558.1| - 0.0026 17.6 0.0 0.0049 16.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|385806160|ref|YP_005842558.1| - 0.0051 16.4 0.0 0.008 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|385806160|ref|YP_005842558.1| - 0.0056 17.3 0.0 0.011 16.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|385806160|ref|YP_005842558.1| - 0.031 13.8 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family adh_short_C2 PF13561.6 gi|385806161|ref|YP_005842559.1| - 6.5e-41 140.4 0.1 4.4e-23 82.1 0.0 2.1 2 0 0 2 2 2 2 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|385806161|ref|YP_005842559.1| - 1.5e-25 89.9 0.8 7.7e-18 64.7 0.9 2.1 2 0 0 2 2 2 2 short chain dehydrogenase KR PF08659.10 gi|385806161|ref|YP_005842559.1| - 1.3e-09 38.2 0.4 2.1e-09 37.5 0.4 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|385806161|ref|YP_005842559.1| - 4.2e-06 26.4 0.0 5.4e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|385806161|ref|YP_005842559.1| - 1.9e-05 23.8 0.0 2.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|385806161|ref|YP_005842559.1| - 0.00012 21.6 0.2 0.00022 20.7 0.2 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Sacchrp_dh_NADP PF03435.18 gi|385806161|ref|YP_005842559.1| - 0.00024 21.4 0.2 0.00054 20.2 0.2 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Polysacc_synt_2 PF02719.15 gi|385806161|ref|YP_005842559.1| - 0.00085 18.5 0.3 0.0013 18.0 0.3 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein COX1 PF00115.20 gi|385806161|ref|YP_005842559.1| - 0.0043 15.9 0.0 0.0046 15.9 0.0 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I NAD_binding_4 PF07993.12 gi|385806161|ref|YP_005842559.1| - 0.026 13.7 0.5 0.034 13.3 0.5 1.3 1 1 0 1 1 1 0 Male sterility protein Hpr_kinase_C PF07475.12 gi|385806161|ref|YP_005842559.1| - 0.076 12.5 1.3 0.32 10.5 0.8 2.1 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain Methyltransf_25 PF13649.6 gi|385806161|ref|YP_005842559.1| - 0.13 13.0 0.0 0.3 11.8 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain UPRTase PF14681.6 gi|385806162|ref|YP_005842560.1| - 6.5e-43 146.6 0.4 7.4e-43 146.4 0.4 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|385806162|ref|YP_005842560.1| - 2.8e-08 33.4 0.6 3.9e-08 33.0 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Hydrolase_3 PF08282.12 gi|385806163|ref|YP_005842561.1| - 2.8e-09 37.1 0.1 8e-05 22.5 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|385806163|ref|YP_005842561.1| - 9.8e-06 24.9 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase HAD PF12710.7 gi|385806163|ref|YP_005842561.1| - 0.024 15.1 0.1 11 6.4 0.0 2.9 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385806163|ref|YP_005842561.1| - 0.056 13.7 0.1 6.1 7.1 0.0 2.4 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase RepB_primase PF16793.5 gi|385806164|ref|YP_005842562.1| - 0.00013 22.2 0.0 0.00019 21.6 0.0 1.2 1 0 0 1 1 1 1 RepB DNA-primase from phage plasmid NIF PF03031.18 gi|385806164|ref|YP_005842562.1| - 0.061 13.1 0.1 0.16 11.7 0.0 1.8 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase FAA_hydrolase PF01557.18 gi|385806165|ref|YP_005842563.1| - 8.5e-69 231.5 0.0 1e-68 231.3 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF348 PF03990.14 gi|385806165|ref|YP_005842563.1| - 0.039 13.7 0.0 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain DUF1947 PF09183.10 gi|385806165|ref|YP_005842563.1| - 0.086 13.1 1.8 0.22 11.9 1.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) MTS PF05175.14 gi|385806166|ref|YP_005842564.1| - 1.2e-15 57.5 0.0 4.1e-15 55.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|385806166|ref|YP_005842564.1| - 1.8e-11 44.0 0.0 2.4e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|385806166|ref|YP_005842564.1| - 1.6e-10 41.0 0.0 2.4e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|385806166|ref|YP_005842564.1| - 2.1e-10 41.2 0.0 4.3e-10 40.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|385806166|ref|YP_005842564.1| - 6.9e-09 36.3 0.0 2.8e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385806166|ref|YP_005842564.1| - 2.6e-07 31.2 0.0 6.5e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|385806166|ref|YP_005842564.1| - 2.6e-06 27.3 0.3 1e-05 25.4 0.3 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|385806166|ref|YP_005842564.1| - 1.1e-05 25.3 0.0 2.1e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|385806166|ref|YP_005842564.1| - 1.9e-05 24.6 0.0 7.2e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|385806166|ref|YP_005842564.1| - 0.00021 21.1 0.2 0.00073 19.3 0.0 1.8 2 0 0 2 2 2 1 Lysine methyltransferase FtsJ PF01728.19 gi|385806166|ref|YP_005842564.1| - 0.00038 20.6 0.0 0.001 19.2 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.20 gi|385806166|ref|YP_005842564.1| - 0.0004 19.8 0.0 0.00055 19.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.11 gi|385806166|ref|YP_005842564.1| - 0.00058 18.9 0.0 0.00075 18.6 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_15 PF09445.10 gi|385806166|ref|YP_005842564.1| - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|385806166|ref|YP_005842564.1| - 0.0034 17.2 0.0 0.0047 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_Mtase PF02384.16 gi|385806166|ref|YP_005842564.1| - 0.0062 15.8 0.0 0.0087 15.4 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase TehB PF03848.14 gi|385806166|ref|YP_005842564.1| - 0.01 15.3 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_10 PF05971.12 gi|385806166|ref|YP_005842564.1| - 0.013 14.8 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA methyltransferase MetW PF07021.12 gi|385806166|ref|YP_005842564.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|385806166|ref|YP_005842564.1| - 0.02 14.2 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF938 PF06080.12 gi|385806166|ref|YP_005842564.1| - 0.021 14.6 0.0 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Cons_hypoth95 PF03602.15 gi|385806166|ref|YP_005842564.1| - 0.06 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|385806166|ref|YP_005842564.1| - 0.09 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|385806166|ref|YP_005842564.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase MFS_1 PF07690.16 gi|385806167|ref|YP_005842565.1| - 4.4e-48 164.0 54.9 6.7e-48 163.4 54.2 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|385806167|ref|YP_005842565.1| - 2.4e-10 39.9 41.3 6.9e-10 38.4 18.2 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|385806167|ref|YP_005842565.1| - 5.6e-06 25.5 29.7 0.0043 15.9 12.1 2.2 2 0 0 2 2 2 2 MFS_1 like family OATP PF03137.20 gi|385806167|ref|YP_005842565.1| - 4.7e-05 21.9 0.4 4.7e-05 21.9 0.4 3.5 2 2 2 4 4 4 1 Organic Anion Transporter Polypeptide (OATP) family PIRT PF15099.6 gi|385806167|ref|YP_005842565.1| - 4.2 6.9 6.6 9.7 5.8 0.9 2.7 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family Ribosomal_L15e PF00827.17 gi|385806169|ref|YP_005842567.1| - 3.7e-78 261.6 6.2 3.7e-78 261.6 6.2 1.4 1 1 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|385806170|ref|YP_005842568.1| - 4.1e-27 94.8 3.0 5e-27 94.6 3.0 1.1 1 0 0 1 1 1 1 RNA binding UBM PF14377.6 gi|385806170|ref|YP_005842568.1| - 0.0091 15.4 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 Ubiquitin binding region Blt1 PF12754.7 gi|385806170|ref|YP_005842568.1| - 0.027 14.8 0.1 0.041 14.2 0.1 1.3 1 0 0 1 1 1 0 Blt1 N-terminal domain 3-dmu-9_3-mt PF06983.13 gi|385806170|ref|YP_005842568.1| - 0.049 14.2 0.1 0.078 13.5 0.1 1.3 1 0 0 1 1 1 0 3-demethylubiquinone-9 3-methyltransferase RNase_P_p30 PF01876.16 gi|385806171|ref|YP_005842569.1| - 3.3e-10 39.8 0.2 5.6e-10 39.0 0.2 1.3 1 0 0 1 1 1 1 RNase P subunit p30 FAD_binding_4 PF01565.23 gi|385806171|ref|YP_005842569.1| - 0.078 12.7 0.0 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain RNase_P_Rpp14 PF01900.19 gi|385806172|ref|YP_005842570.1| - 3.1e-14 53.0 0.1 4.5e-14 52.5 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family IGR PF09597.10 gi|385806172|ref|YP_005842570.1| - 0.043 13.9 0.7 0.094 12.8 0.7 1.5 1 0 0 1 1 1 0 IGR protein motif WhiA_N PF10298.9 gi|385806172|ref|YP_005842570.1| - 0.063 13.3 0.3 0.25 11.4 0.3 2.0 1 1 1 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain DUF5370 PF17340.2 gi|385806172|ref|YP_005842570.1| - 0.22 11.4 1.8 0.28 11.1 0.5 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5370) PhosphMutase PF10143.9 gi|385806173|ref|YP_005842571.1| - 3.3e-46 157.3 0.0 4.5e-46 156.8 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|385806173|ref|YP_005842571.1| - 3.7e-26 92.0 0.0 4.6e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|385806173|ref|YP_005842571.1| - 0.026 14.1 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Carb_kinase PF01256.17 gi|385806174|ref|YP_005842572.1| - 1.9e-44 152.0 0.0 3.1e-44 151.3 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|385806174|ref|YP_005842572.1| - 2e-41 141.7 0.0 3.3e-41 141.0 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus T2SSE PF00437.20 gi|385806175|ref|YP_005842573.1| - 2.8e-11 43.0 0.2 1.4e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|385806175|ref|YP_005842573.1| - 3.7e-05 24.2 0.0 9e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|385806175|ref|YP_005842573.1| - 0.00035 21.1 0.0 0.0042 17.6 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|385806175|ref|YP_005842573.1| - 0.00071 19.6 0.0 0.0025 17.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|385806175|ref|YP_005842573.1| - 0.00075 19.3 0.2 0.053 13.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|385806175|ref|YP_005842573.1| - 0.0022 17.7 0.0 0.0082 15.9 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|385806175|ref|YP_005842573.1| - 0.0025 18.1 0.0 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|385806175|ref|YP_005842573.1| - 0.0025 17.2 0.1 0.0068 15.8 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RuvB_N PF05496.12 gi|385806175|ref|YP_005842573.1| - 0.0029 17.4 0.1 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|385806175|ref|YP_005842573.1| - 0.0043 16.7 0.1 0.014 15.1 0.0 1.9 1 1 1 2 2 2 1 Thymidylate kinase ABC_tran PF00005.27 gi|385806175|ref|YP_005842573.1| - 0.0044 17.5 0.0 0.019 15.5 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_5 PF07728.14 gi|385806175|ref|YP_005842573.1| - 0.006 16.6 0.0 0.014 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|385806175|ref|YP_005842573.1| - 0.0065 16.9 0.4 0.024 15.0 0.0 2.3 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) PTS_IIB PF02302.17 gi|385806175|ref|YP_005842573.1| - 0.009 16.7 0.1 15 6.3 0.0 4.0 4 0 0 4 4 4 0 PTS system, Lactose/Cellobiose specific IIB subunit AAA_28 PF13521.6 gi|385806175|ref|YP_005842573.1| - 0.0092 16.2 0.0 0.025 14.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain Sigma54_activ_2 PF14532.6 gi|385806175|ref|YP_005842573.1| - 0.0093 16.1 0.0 0.042 14.0 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|385806175|ref|YP_005842573.1| - 0.01 15.4 0.1 0.023 14.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|385806175|ref|YP_005842573.1| - 0.012 15.6 0.1 0.026 14.4 0.1 1.6 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|385806175|ref|YP_005842573.1| - 0.013 15.2 1.0 0.023 14.3 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|385806175|ref|YP_005842573.1| - 0.014 15.6 0.0 0.063 13.4 0.0 2.1 3 0 0 3 3 1 0 AAA domain MeaB PF03308.16 gi|385806175|ref|YP_005842573.1| - 0.015 14.3 0.0 0.032 13.2 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|385806175|ref|YP_005842573.1| - 0.017 14.5 0.1 0.065 12.7 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|385806175|ref|YP_005842573.1| - 0.019 14.9 0.0 0.053 13.4 0.0 1.8 1 0 0 1 1 1 0 NTPase Zeta_toxin PF06414.12 gi|385806175|ref|YP_005842573.1| - 0.021 14.1 0.0 0.052 12.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|385806175|ref|YP_005842573.1| - 0.022 14.8 0.1 0.069 13.1 0.0 1.9 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|385806175|ref|YP_005842573.1| - 0.025 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ResIII PF04851.15 gi|385806175|ref|YP_005842573.1| - 0.036 14.1 0.0 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF815 PF05673.13 gi|385806175|ref|YP_005842573.1| - 0.048 12.8 0.0 0.098 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PduV-EutP PF10662.9 gi|385806175|ref|YP_005842573.1| - 0.053 13.3 0.1 8.1 6.2 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|385806175|ref|YP_005842573.1| - 0.055 13.2 0.6 0.16 11.7 0.1 2.1 3 0 0 3 3 2 0 AAA domain AAA_3 PF07726.11 gi|385806175|ref|YP_005842573.1| - 0.078 12.8 0.0 0.57 10.0 0.0 2.5 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|385806175|ref|YP_005842573.1| - 0.098 12.4 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|385806175|ref|YP_005842573.1| - 0.11 12.8 0.0 0.37 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|385806175|ref|YP_005842573.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family UbiA PF01040.18 gi|385806176|ref|YP_005842574.1| - 2.7e-37 128.4 18.8 3.7e-37 128.0 18.8 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4407 PF14362.6 gi|385806176|ref|YP_005842574.1| - 2.1 7.6 8.8 2.1 7.6 6.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) HTH_45 PF14947.6 gi|385806178|ref|YP_005842576.1| - 1.4e-17 63.4 2.7 1.6e-17 63.3 2.7 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|385806178|ref|YP_005842576.1| - 0.0024 17.6 0.3 0.0024 17.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Mrr_N PF14338.6 gi|385806178|ref|YP_005842576.1| - 0.0085 16.2 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Mrr N-terminal domain Adeno_E1B_19K PF01691.16 gi|385806178|ref|YP_005842576.1| - 0.011 15.2 0.0 4.1 6.9 0.0 2.3 2 1 0 2 2 2 0 Adenovirus E1B 19K protein / small t-antigen Hjc PF01870.18 gi|385806179|ref|YP_005842577.1| - 3.8e-23 81.3 0.1 5e-23 80.9 0.1 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|385806179|ref|YP_005842577.1| - 2.7e-06 26.9 0.1 1.2e-05 24.9 0.1 2.0 1 1 0 1 1 1 1 REase_AHJR-like NERD PF08378.11 gi|385806179|ref|YP_005842577.1| - 0.0027 18.2 0.0 0.0033 17.9 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain UPF0102 PF02021.17 gi|385806179|ref|YP_005842577.1| - 0.006 16.8 0.4 0.009 16.2 0.3 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0102 L_protein_N PF15518.6 gi|385806179|ref|YP_005842577.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 L protein N-terminus FeS_assembly_P PF01883.19 gi|385806180|ref|YP_005842578.1| - 4.6e-19 68.4 0.0 1.6e-17 63.5 0.0 2.0 1 1 1 2 2 2 1 Iron-sulfur cluster assembly protein DUF384 PF04064.13 gi|385806180|ref|YP_005842578.1| - 0.025 14.4 0.1 0.052 13.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF384) DUF3784 PF12650.7 gi|385806181|ref|YP_005842579.1| - 0.0018 18.4 1.9 0.0022 18.1 1.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) Jiraiya PF15038.6 gi|385806181|ref|YP_005842579.1| - 0.002 17.6 0.9 0.002 17.6 0.9 1.1 1 0 0 1 1 1 1 Jiraiya DUF2207 PF09972.9 gi|385806181|ref|YP_005842579.1| - 0.0024 16.7 2.3 0.0025 16.6 2.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) RseC_MucC PF04246.12 gi|385806181|ref|YP_005842579.1| - 0.0046 16.9 0.4 0.0051 16.8 0.4 1.1 1 0 0 1 1 1 1 Positive regulator of sigma(E), RseC/MucC DUF3267 PF11667.8 gi|385806181|ref|YP_005842579.1| - 0.012 15.9 1.7 0.015 15.6 1.7 1.2 1 0 0 1 1 1 0 Putative zincin peptidase DUF4519 PF15012.6 gi|385806181|ref|YP_005842579.1| - 0.065 13.4 0.1 0.065 13.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) Hpr_kinase_N PF02603.16 gi|385806181|ref|YP_005842579.1| - 0.069 13.2 0.0 0.072 13.1 0.0 1.1 1 0 0 1 1 1 0 HPr Serine kinase N terminus E1-E2_ATPase PF00122.20 gi|385806181|ref|YP_005842579.1| - 0.14 11.7 1.0 0.15 11.6 1.0 1.0 1 0 0 1 1 1 0 E1-E2 ATPase TMEM238 PF15125.6 gi|385806181|ref|YP_005842579.1| - 0.49 10.6 7.5 0.61 10.3 7.5 1.1 1 0 0 1 1 1 0 TMEM238 protein family DUF3899 PF13038.6 gi|385806181|ref|YP_005842579.1| - 0.79 10.3 10.2 0.55 10.8 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3899) SdpI PF13630.6 gi|385806181|ref|YP_005842579.1| - 1.5 9.0 6.8 1.9 8.7 6.8 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Tetraspanin PF00335.20 gi|385806181|ref|YP_005842579.1| - 3.2 7.4 7.0 4 7.1 7.0 1.2 1 0 0 1 1 1 0 Tetraspanin family MoCF_biosynth PF00994.24 gi|385806182|ref|YP_005842580.1| - 6.2e-31 107.0 0.0 1.1e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|385806182|ref|YP_005842580.1| - 0.0011 19.1 0.4 0.0027 17.8 0.4 1.7 1 0 0 1 1 1 1 Damage-inducible protein CinA KH domain SHMT PF00464.19 gi|385806183|ref|YP_005842581.1| - 3.2e-65 220.3 0.2 4e-65 220.0 0.2 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|385806183|ref|YP_005842581.1| - 1.5e-10 40.8 0.0 2.2e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|385806183|ref|YP_005842581.1| - 1.1e-09 38.0 0.0 2.7e-09 36.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II SelA PF03841.13 gi|385806183|ref|YP_005842581.1| - 0.00083 18.5 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase DegT_DnrJ_EryC1 PF01041.17 gi|385806183|ref|YP_005842581.1| - 0.00083 18.8 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|385806183|ref|YP_005842581.1| - 0.0014 17.7 0.0 0.0022 17.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Pyridoxal_deC PF00282.19 gi|385806183|ref|YP_005842581.1| - 0.12 11.0 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain RNA_binding PF01877.17 gi|385806184|ref|YP_005842582.1| - 5.6e-08 33.1 0.2 6.8e-08 32.8 0.2 1.1 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|385806185|ref|YP_005842583.1| - 4.9e-14 52.9 0.0 8.7e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|385806185|ref|YP_005842583.1| - 8e-12 45.8 0.0 1.5e-11 45.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|385806185|ref|YP_005842583.1| - 0.00075 18.9 0.7 0.014 14.7 0.1 2.1 1 1 1 2 2 2 1 KaiC AAA_28 PF13521.6 gi|385806185|ref|YP_005842583.1| - 0.0099 16.1 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|385806185|ref|YP_005842583.1| - 0.019 14.6 0.0 0.045 13.4 0.0 1.6 1 1 1 2 2 2 0 Dephospho-CoA kinase AAA_22 PF13401.6 gi|385806185|ref|YP_005842583.1| - 0.022 15.0 0.1 0.046 14.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|385806185|ref|YP_005842583.1| - 0.029 13.8 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|385806185|ref|YP_005842583.1| - 0.03 14.5 0.0 0.039 14.1 0.0 1.3 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|385806185|ref|YP_005842583.1| - 0.05 12.8 0.0 0.052 12.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|385806185|ref|YP_005842583.1| - 0.067 12.5 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|385806185|ref|YP_005842583.1| - 0.073 13.2 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|385806185|ref|YP_005842583.1| - 0.16 12.3 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain TMCCDC2 PF15844.5 gi|385806188|ref|YP_005842586.1| - 0.018 15.0 0.3 0.034 14.1 0.3 1.4 1 0 0 1 1 1 0 Transmembrane and coiled-coil domain-containing protein 2 tRNA_NucTransf2 PF09249.11 gi|385806189|ref|YP_005842587.1| - 7e-39 132.6 0.1 2.4e-38 130.8 0.0 1.9 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|385806189|ref|YP_005842587.1| - 1.1e-10 41.6 0.3 3.6e-10 40.0 0.3 1.9 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|385806189|ref|YP_005842587.1| - 9.8e-07 29.1 0.4 1.9e-06 28.1 0.4 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|385806190|ref|YP_005842588.1| - 1.8e-27 95.3 0.0 2.7e-15 56.3 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|385806190|ref|YP_005842588.1| - 4.5e-14 52.8 0.4 7e-14 52.2 0.4 1.3 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|385806190|ref|YP_005842588.1| - 8.1e-13 48.5 0.0 9.9e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily tRNA_int_endo PF01974.17 gi|385806191|ref|YP_005842589.1| - 2.6e-09 37.0 1.2 4.2e-09 36.3 0.1 1.8 2 1 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|385806191|ref|YP_005842589.1| - 0.038 13.7 0.1 0.084 12.6 0.1 1.7 1 0 0 1 1 1 0 tRNA intron endonuclease, N-terminal domain SdiA-regulated PF06977.11 gi|385806191|ref|YP_005842589.1| - 0.078 12.2 0.0 0.098 11.9 0.0 1.2 1 0 0 1 1 1 0 SdiA-regulated Sigma70_r1_1 PF03979.14 gi|385806192|ref|YP_005842590.1| - 0.017 15.2 5.1 0.055 13.5 0.8 2.2 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 tRNA-synt_1e PF01406.19 gi|385806192|ref|YP_005842590.1| - 0.12 11.7 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Linocin_M18 PF04454.12 gi|385806193|ref|YP_005842591.1| - 3.1e-27 95.5 0.0 5.2e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|385806193|ref|YP_005842591.1| - 6.8e-09 36.2 2.5 6.8e-09 36.2 2.5 1.8 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|385806193|ref|YP_005842591.1| - 0.00012 22.0 0.5 0.00032 20.6 0.3 1.8 2 0 0 2 2 2 1 Ferritin-like domain DUF2383 PF09537.10 gi|385806193|ref|YP_005842591.1| - 0.0015 18.9 0.3 0.0015 18.9 0.3 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF2383) DUF3231 PF11553.8 gi|385806193|ref|YP_005842591.1| - 0.0071 16.0 1.2 0.011 15.3 0.5 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3231) UvrD-helicase PF00580.21 gi|385806193|ref|YP_005842591.1| - 0.0091 15.5 2.8 0.012 15.2 2.8 1.1 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain T3RM_EcoP15I_C PF18273.1 gi|385806193|ref|YP_005842591.1| - 0.029 14.6 0.5 0.077 13.3 0.5 1.7 1 0 0 1 1 1 0 Type III R-M EcoP15I C-terminal domain DUF892 PF05974.12 gi|385806193|ref|YP_005842591.1| - 0.036 14.1 0.6 0.1 12.6 0.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF892) COQ7 PF03232.13 gi|385806193|ref|YP_005842591.1| - 0.064 13.0 0.0 0.55 10.0 0.1 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 SeqA PF03925.13 gi|385806193|ref|YP_005842591.1| - 0.097 12.6 0.2 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 SeqA protein C-terminal domain FCH PF00611.23 gi|385806194|ref|YP_005842592.1| - 0.00021 21.5 3.1 0.00048 20.4 3.1 1.6 1 0 0 1 1 1 1 Fes/CIP4, and EFC/F-BAR homology domain TFIIS_M PF07500.14 gi|385806194|ref|YP_005842592.1| - 0.0085 16.6 3.5 0.0085 16.6 3.5 1.4 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS), central domain Rubrerythrin PF02915.17 gi|385806194|ref|YP_005842592.1| - 0.011 16.1 9.4 0.032 14.6 8.7 2.0 1 1 0 1 1 1 0 Rubrerythrin FA_desaturase_2 PF03405.14 gi|385806194|ref|YP_005842592.1| - 0.02 13.8 0.4 0.25 10.1 0.0 2.0 1 1 1 2 2 2 0 Fatty acid desaturase Vps35 PF03635.17 gi|385806194|ref|YP_005842592.1| - 0.022 13.3 4.4 0.026 13.1 4.4 1.0 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Cas_Cmr5 PF09701.10 gi|385806194|ref|YP_005842592.1| - 0.047 14.0 1.6 0.17 12.2 0.3 2.2 2 1 0 2 2 2 0 CRISPR-associated protein (Cas_Cmr5) Cnd1 PF12717.7 gi|385806194|ref|YP_005842592.1| - 0.052 13.6 3.7 0.066 13.3 2.2 1.7 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 Peptidase_S46 PF10459.9 gi|385806194|ref|YP_005842592.1| - 0.093 11.4 3.2 0.11 11.1 3.2 1.0 1 0 0 1 1 1 0 Peptidase S46 YkuI_C PF10388.9 gi|385806194|ref|YP_005842592.1| - 4.6 7.0 8.3 24 4.7 8.3 2.0 1 1 0 1 1 1 0 EAL-domain associated signalling protein domain PALP PF00291.25 gi|385806195|ref|YP_005842593.1| - 3.3e-13 49.7 0.0 3.4e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PALP PF00291.25 gi|385806196|ref|YP_005842594.1| - 1.4e-10 41.1 0.0 1.5e-10 41.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HD PF01966.22 gi|385806198|ref|YP_005842596.1| - 2.8e-06 27.6 0.1 1.1e-05 25.7 0.1 2.2 1 0 0 1 1 1 1 HD domain UPF0004 PF00919.20 gi|385806199|ref|YP_005842597.1| - 4.6e-25 87.5 0.0 9.5e-25 86.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.21 gi|385806199|ref|YP_005842597.1| - 4.8e-20 72.6 0.1 1.3e-19 71.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|385806199|ref|YP_005842597.1| - 1.1e-06 28.5 0.6 2.2e-06 27.6 0.6 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|385806199|ref|YP_005842597.1| - 0.0015 18.7 0.6 0.018 15.2 0.6 2.4 1 1 0 1 1 1 1 TRAM domain FCP1_C PF09309.10 gi|385806200|ref|YP_005842598.1| - 0.16 11.9 0.0 0.17 11.7 0.0 1.1 1 0 0 1 1 1 0 FCP1, C-terminal WG_beta_rep PF14903.6 gi|385806201|ref|YP_005842599.1| - 0.056 13.8 0.0 0.28 11.5 0.0 2.1 2 0 0 2 2 2 0 WG containing repeat Lep_receptor_Ig PF06328.11 gi|385806201|ref|YP_005842599.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Ig-like C2-type domain Zn-ribbon_8 PF09723.10 gi|385806202|ref|YP_005842600.1| - 0.0012 18.9 1.8 0.0021 18.1 1.8 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|385806202|ref|YP_005842600.1| - 0.0018 18.1 1.5 0.0028 17.5 1.5 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain HypA PF01155.19 gi|385806202|ref|YP_005842600.1| - 0.0024 17.9 1.1 0.0042 17.1 1.0 1.3 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|385806202|ref|YP_005842600.1| - 0.025 14.5 0.5 0.041 13.8 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain MCM_OB PF17207.3 gi|385806202|ref|YP_005842600.1| - 0.034 14.0 0.2 0.047 13.5 0.2 1.2 1 0 0 1 1 1 0 MCM OB domain Ribosomal_L37ae PF01780.19 gi|385806202|ref|YP_005842600.1| - 0.11 12.6 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L37ae protein family HGD-D PF06050.13 gi|385806202|ref|YP_005842600.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.0 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component TFIIS_C PF01096.18 gi|385806202|ref|YP_005842600.1| - 0.16 11.9 1.5 7.4 6.5 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3039 PF11238.8 gi|385806202|ref|YP_005842600.1| - 0.33 10.7 2.1 0.63 9.8 2.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Rubredoxin_2 PF18073.1 gi|385806202|ref|YP_005842600.1| - 0.93 9.3 3.8 9.1 6.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain QRPTase_C PF01729.19 gi|385806203|ref|YP_005842601.1| - 4.9e-28 98.0 0.0 7e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|385806203|ref|YP_005842601.1| - 5.8e-05 23.5 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|385806203|ref|YP_005842601.1| - 8.6e-05 22.5 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|385806203|ref|YP_005842601.1| - 0.0052 17.2 0.0 3.5 8.0 0.0 2.3 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HTH_45 PF14947.6 gi|385806204|ref|YP_005842602.1| - 1.2e-09 38.0 3.9 1.2e-09 38.0 3.9 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|385806204|ref|YP_005842602.1| - 0.0073 16.1 0.2 0.0073 16.1 0.2 1.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4364) RNA_pol_Rpc34 PF05158.12 gi|385806204|ref|YP_005842602.1| - 0.012 15.0 0.4 0.022 14.1 0.4 1.4 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit TBPIP PF07106.13 gi|385806204|ref|YP_005842602.1| - 0.029 14.3 1.9 0.073 13.0 0.7 2.1 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain MutL_C PF08676.11 gi|385806204|ref|YP_005842602.1| - 0.053 13.3 0.0 0.14 11.9 0.0 1.8 1 1 0 1 1 1 0 MutL C terminal dimerisation domain B-block_TFIIIC PF04182.12 gi|385806204|ref|YP_005842602.1| - 0.066 13.4 0.6 0.15 12.2 0.3 1.8 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC DUF5603 PF18231.1 gi|385806204|ref|YP_005842602.1| - 0.099 13.0 2.6 0.56 10.5 0.0 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF5603) FBPase_3 PF01950.16 gi|385806204|ref|YP_005842602.1| - 0.1 11.7 0.1 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 Fructose-1,6-bisphosphatase HydF_dimer PF18128.1 gi|385806204|ref|YP_005842602.1| - 0.11 12.6 1.7 18 5.4 1.0 2.7 2 1 1 3 3 3 0 Hydrogen maturase F dimerization domain KaiA PF07688.12 gi|385806205|ref|YP_005842603.1| - 0.042 14.0 0.1 0.059 13.5 0.0 1.3 1 1 0 1 1 1 0 KaiA C-terminal domain Band_7 PF01145.25 gi|385806206|ref|YP_005842604.1| - 5e-35 121.1 1.0 6.3e-35 120.8 1.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|385806206|ref|YP_005842604.1| - 0.0011 18.7 0.3 0.0021 17.8 0.1 1.5 2 0 0 2 2 2 1 SPFH domain-Band 7 family ProSAAS PF07259.12 gi|385806206|ref|YP_005842604.1| - 0.15 12.0 0.4 0.26 11.2 0.4 1.3 1 0 0 1 1 1 0 ProSAAS precursor NfeD PF01957.18 gi|385806207|ref|YP_005842605.1| - 1.6e-14 54.1 3.0 2.9e-13 50.0 0.5 2.7 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|385806207|ref|YP_005842605.1| - 0.0001 22.3 0.3 0.00016 21.6 0.3 1.4 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.16 gi|385806207|ref|YP_005842605.1| - 0.00072 18.6 1.3 0.00072 18.6 1.3 1.7 1 1 1 2 2 2 1 Serine dehydrogenase proteinase AAA PF00004.29 gi|385806208|ref|YP_005842606.1| - 3.9e-100 331.5 0.0 2.9e-50 170.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|385806208|ref|YP_005842606.1| - 4.2e-34 116.1 1.2 1.5e-16 59.9 0.1 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|385806208|ref|YP_005842606.1| - 1.4e-28 98.9 0.1 5.9e-28 96.9 0.5 1.9 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|385806208|ref|YP_005842606.1| - 1.1e-16 61.0 0.0 1.7e-08 34.3 0.0 2.9 2 2 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|385806208|ref|YP_005842606.1| - 1.1e-15 58.4 0.1 4.4e-07 30.5 0.0 3.6 2 1 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|385806208|ref|YP_005842606.1| - 4.7e-15 56.1 0.0 6.3e-08 32.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|385806208|ref|YP_005842606.1| - 6.7e-13 48.8 0.8 5.3e-06 26.5 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|385806208|ref|YP_005842606.1| - 2e-12 47.0 0.0 8.6e-05 21.9 0.0 2.9 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|385806208|ref|YP_005842606.1| - 1e-11 45.3 1.4 0.0019 18.5 0.2 4.3 2 2 1 3 3 3 2 AAA domain AAA_33 PF13671.6 gi|385806208|ref|YP_005842606.1| - 2.2e-11 44.1 0.0 5.8e-05 23.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|385806208|ref|YP_005842606.1| - 4.3e-10 39.7 0.0 0.00029 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|385806208|ref|YP_005842606.1| - 4.5e-10 39.2 0.7 4.5e-10 39.2 0.7 2.1 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.17 gi|385806208|ref|YP_005842606.1| - 1.9e-08 34.2 0.0 0.0093 15.7 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|385806208|ref|YP_005842606.1| - 3.5e-08 33.9 0.0 0.0033 17.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|385806208|ref|YP_005842606.1| - 5.5e-08 32.4 0.4 0.0087 15.5 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|385806208|ref|YP_005842606.1| - 6.4e-08 33.2 0.0 0.006 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|385806208|ref|YP_005842606.1| - 2e-07 30.8 2.7 0.14 11.7 0.3 4.2 3 2 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|385806208|ref|YP_005842606.1| - 2.1e-07 31.3 0.0 0.0049 17.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Vps4_C PF09336.10 gi|385806208|ref|YP_005842606.1| - 1.6e-06 28.0 0.5 0.0042 17.0 0.0 3.0 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Sigma54_activat PF00158.26 gi|385806208|ref|YP_005842606.1| - 2.5e-06 27.3 0.0 0.14 11.8 0.0 3.4 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|385806208|ref|YP_005842606.1| - 3e-06 27.1 0.0 0.049 13.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|385806208|ref|YP_005842606.1| - 3.9e-06 26.9 0.5 0.31 11.0 0.0 4.0 5 0 0 5 5 3 2 NACHT domain AAA_30 PF13604.6 gi|385806208|ref|YP_005842606.1| - 4.5e-06 26.5 0.0 0.19 11.4 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_7 PF12775.7 gi|385806208|ref|YP_005842606.1| - 5.6e-06 26.0 0.0 0.093 12.2 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|385806208|ref|YP_005842606.1| - 6.5e-06 25.5 0.0 0.094 11.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|385806208|ref|YP_005842606.1| - 6.7e-06 26.1 0.0 0.0021 17.9 0.0 2.7 2 0 0 2 2 2 1 Bacterial dnaA protein ATPase PF06745.13 gi|385806208|ref|YP_005842606.1| - 7.8e-06 25.4 1.5 0.38 10.1 0.0 3.6 2 2 0 3 3 3 2 KaiC ABC_tran PF00005.27 gi|385806208|ref|YP_005842606.1| - 9.2e-06 26.2 0.0 0.24 11.9 0.0 2.5 2 0 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|385806208|ref|YP_005842606.1| - 9.5e-06 25.6 0.0 0.092 12.8 0.0 2.6 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|385806208|ref|YP_005842606.1| - 1.2e-05 25.1 0.0 0.089 12.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|385806208|ref|YP_005842606.1| - 1.7e-05 24.1 0.1 0.042 12.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|385806208|ref|YP_005842606.1| - 2.2e-05 24.0 0.0 0.28 10.6 0.0 2.7 2 0 0 2 2 2 2 PhoH-like protein Zeta_toxin PF06414.12 gi|385806208|ref|YP_005842606.1| - 4.5e-05 22.8 0.0 0.23 10.7 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|385806208|ref|YP_005842606.1| - 0.00012 22.2 0.0 0.23 11.6 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|385806208|ref|YP_005842606.1| - 0.00016 21.7 0.1 0.36 10.7 0.0 3.6 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|385806208|ref|YP_005842606.1| - 0.00042 20.2 0.0 0.95 9.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|385806208|ref|YP_005842606.1| - 0.00049 20.5 0.4 1.8 8.9 0.0 2.9 2 1 1 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|385806208|ref|YP_005842606.1| - 0.0005 19.4 0.0 0.12 11.5 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) TniB PF05621.11 gi|385806208|ref|YP_005842606.1| - 0.0011 18.4 0.0 2.5 7.5 0.0 3.8 3 1 1 4 4 4 1 Bacterial TniB protein AAA_6 PF12774.7 gi|385806208|ref|YP_005842606.1| - 0.0013 17.8 0.0 0.11 11.4 0.0 2.5 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_17 PF13207.6 gi|385806208|ref|YP_005842606.1| - 0.0014 19.1 0.0 1.7 9.1 0.0 3.0 3 0 0 3 3 2 1 AAA domain AFG1_ATPase PF03969.16 gi|385806208|ref|YP_005842606.1| - 0.0021 17.0 0.0 1.4 7.8 0.0 2.8 3 0 0 3 3 3 1 AFG1-like ATPase Rad17 PF03215.15 gi|385806208|ref|YP_005842606.1| - 0.0025 17.8 0.0 8.2 6.3 0.0 3.3 2 1 1 3 3 3 0 Rad17 P-loop domain NTPase_1 PF03266.15 gi|385806208|ref|YP_005842606.1| - 0.0027 17.6 1.1 7.1 6.5 0.0 4.0 3 1 1 4 4 3 0 NTPase Guanylate_kin PF00625.21 gi|385806208|ref|YP_005842606.1| - 0.0058 16.3 0.2 8.1 6.1 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase NB-ARC PF00931.22 gi|385806208|ref|YP_005842606.1| - 0.0075 15.5 0.0 4.9 6.3 0.0 2.6 2 0 0 2 2 2 0 NB-ARC domain IPT PF01745.16 gi|385806208|ref|YP_005842606.1| - 0.014 14.8 0.1 4.1 6.7 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase ADSL_C PF10397.9 gi|385806208|ref|YP_005842606.1| - 0.015 15.8 0.8 2.1 8.9 0.3 3.1 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus Cytidylate_kin PF02224.18 gi|385806208|ref|YP_005842606.1| - 0.018 14.8 0.1 5 6.8 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase PduV-EutP PF10662.9 gi|385806208|ref|YP_005842606.1| - 0.034 13.9 0.0 8.2 6.2 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SKI PF01202.22 gi|385806208|ref|YP_005842606.1| - 0.037 14.1 0.0 4.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase T2SSE PF00437.20 gi|385806208|ref|YP_005842606.1| - 0.05 12.6 0.0 5.9 5.9 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|385806208|ref|YP_005842606.1| - 0.066 13.0 0.0 14 5.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.19 gi|385806208|ref|YP_005842606.1| - 0.082 12.5 0.1 7.3 6.1 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|385806208|ref|YP_005842606.1| - 0.14 11.9 0.0 5 6.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.10 gi|385806208|ref|YP_005842606.1| - 0.14 11.5 0.0 15 4.9 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.14 gi|385806208|ref|YP_005842606.1| - 0.15 11.2 0.0 10 5.3 0.0 2.8 3 0 0 3 3 3 0 KAP family P-loop domain Helicase_RecD PF05127.14 gi|385806210|ref|YP_005842608.1| - 4.7e-51 173.1 0.0 9e-51 172.2 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|385806210|ref|YP_005842608.1| - 6.8e-45 153.2 0.1 1e-31 110.1 0.0 2.7 2 1 1 3 3 3 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|385806210|ref|YP_005842608.1| - 1.3e-29 101.9 0.0 1.2e-28 98.8 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.6 gi|385806210|ref|YP_005842608.1| - 5.4e-09 36.1 0.7 1.6e-08 34.6 0.7 1.8 1 1 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.6 gi|385806210|ref|YP_005842608.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Acetyltransf_1 PF00583.25 gi|385806210|ref|YP_005842608.1| - 0.0014 18.9 0.1 0.0086 16.3 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385806210|ref|YP_005842608.1| - 0.051 14.0 0.1 0.72 10.3 0.0 2.7 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain AAA_19 PF13245.6 gi|385806210|ref|YP_005842608.1| - 0.14 12.5 0.1 1.4 9.3 0.1 2.5 2 1 0 2 2 2 0 AAA domain PALP PF00291.25 gi|385806211|ref|YP_005842609.1| - 2.7e-48 164.9 0.0 3.4e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Zn-ribbon_8 PF09723.10 gi|385806211|ref|YP_005842609.1| - 0.00018 21.6 1.3 0.00035 20.6 1.3 1.5 1 0 0 1 1 1 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|385806211|ref|YP_005842609.1| - 0.00078 19.4 0.1 0.62 10.1 0.1 2.4 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Rubredoxin PF00301.20 gi|385806211|ref|YP_005842609.1| - 0.0041 17.1 7.3 0.0046 17.0 3.6 2.2 1 1 1 2 2 2 1 Rubredoxin HypA PF01155.19 gi|385806211|ref|YP_005842609.1| - 0.0048 16.9 0.4 0.01 15.8 0.4 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|385806211|ref|YP_005842609.1| - 0.0077 16.2 0.4 0.014 15.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|385806211|ref|YP_005842609.1| - 0.013 14.9 5.2 0.041 13.3 5.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385806211|ref|YP_005842609.1| - 0.028 14.4 0.5 0.059 13.3 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|385806211|ref|YP_005842609.1| - 0.04 13.5 2.4 0.3 10.7 0.3 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C3HC4_3 PF13920.6 gi|385806211|ref|YP_005842609.1| - 0.053 13.4 0.1 0.1 12.5 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.12 gi|385806211|ref|YP_005842609.1| - 0.074 13.0 0.3 0.14 12.1 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons DNA_RNApol_7kD PF03604.13 gi|385806211|ref|YP_005842609.1| - 0.076 12.7 0.4 0.16 11.7 0.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 gi|385806211|ref|YP_005842609.1| - 0.082 12.8 0.4 0.18 11.8 0.4 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|385806211|ref|YP_005842609.1| - 0.12 11.9 6.0 1.5 8.4 0.1 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|385806211|ref|YP_005842609.1| - 0.12 12.4 1.2 0.28 11.2 1.2 1.7 1 0 0 1 1 1 0 Adenylate kinase, active site lid zf-C2H2_4 PF13894.6 gi|385806211|ref|YP_005842609.1| - 0.12 13.2 2.0 6.5 7.9 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger FYDLN_acid PF09538.10 gi|385806211|ref|YP_005842609.1| - 0.15 12.7 0.4 0.31 11.7 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-Sec23_Sec24 PF04810.15 gi|385806211|ref|YP_005842609.1| - 0.19 11.8 1.0 4.7 7.4 1.7 2.7 2 1 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C2H2 PF00096.26 gi|385806211|ref|YP_005842609.1| - 0.19 12.2 1.8 5.1 7.8 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|385806211|ref|YP_005842609.1| - 0.26 11.6 2.7 7.5 6.9 0.1 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.6 gi|385806211|ref|YP_005842609.1| - 0.27 11.0 8.0 2.3 8.0 7.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|385806211|ref|YP_005842609.1| - 0.34 10.9 3.6 17 5.5 4.5 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|385806211|ref|YP_005842609.1| - 0.49 10.4 5.6 0.22 11.5 0.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.6 gi|385806211|ref|YP_005842609.1| - 0.92 9.6 2.4 23 5.1 0.1 2.5 1 1 1 2 2 2 0 CpXC protein zf-C2H2_6 PF13912.6 gi|385806211|ref|YP_005842609.1| - 0.95 9.5 2.9 2.9 8.0 0.5 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_10 PF10058.9 gi|385806211|ref|YP_005842609.1| - 1.3 8.8 3.8 14 5.5 3.8 2.3 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-H2C2_2 PF13465.6 gi|385806211|ref|YP_005842609.1| - 2.7 8.6 4.8 32 5.2 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain ThiI PF02568.14 gi|385806213|ref|YP_005842611.1| - 4.8e-48 163.4 0.0 6.8e-48 162.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|385806213|ref|YP_005842611.1| - 3.1e-19 69.5 0.8 3.1e-19 69.5 0.8 1.6 2 0 0 2 2 2 1 THUMP domain QueC PF06508.13 gi|385806213|ref|YP_005842611.1| - 6e-07 29.2 0.0 0.0017 17.9 0.0 2.6 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|385806213|ref|YP_005842611.1| - 0.12 11.2 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Claudin_3 PF06653.11 gi|385806214|ref|YP_005842612.1| - 0.094 12.6 0.1 0.14 12.0 0.1 1.2 1 0 0 1 1 1 0 Tight junction protein, Claudin-like Acylphosphatase PF00708.18 gi|385806215|ref|YP_005842613.1| - 1.2e-16 60.9 0.1 1.3e-16 60.8 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase T2SSM_b PF10741.9 gi|385806215|ref|YP_005842613.1| - 0.011 15.6 0.0 0.012 15.4 0.0 1.0 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b Acyl_transf_1 PF00698.21 gi|385806215|ref|YP_005842613.1| - 0.062 12.8 0.0 0.066 12.7 0.0 1.0 1 0 0 1 1 1 0 Acyl transferase domain NAD_binding_9 PF13454.6 gi|385806216|ref|YP_005842614.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 FAD-NAD(P)-binding tRNA-synt_1 PF00133.22 gi|385806218|ref|YP_005842616.1| - 1.6e-113 380.0 0.1 4.7e-112 375.2 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|385806218|ref|YP_005842616.1| - 3.8e-27 95.0 1.5 8.4e-14 51.1 0.0 4.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|385806218|ref|YP_005842616.1| - 2.5e-25 89.2 3.1 7e-25 87.8 3.1 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|385806218|ref|YP_005842616.1| - 4.6e-05 23.0 0.0 0.01 15.3 0.0 2.8 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 AhpC-TSA_2 PF13911.6 gi|385806218|ref|YP_005842616.1| - 0.065 13.4 0.0 0.22 11.7 0.0 1.9 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme TackOD1 PF18551.1 gi|385806218|ref|YP_005842616.1| - 0.066 12.9 1.9 21 4.7 0.0 3.4 3 0 0 3 3 3 0 Thaumarchaeal output domain 1 DUF2175 PF09943.9 gi|385806218|ref|YP_005842616.1| - 0.081 13.2 2.6 0.085 13.2 0.2 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2175) DZR PF12773.7 gi|385806218|ref|YP_005842616.1| - 0.14 12.2 0.6 16 5.6 0.3 3.2 2 1 0 2 2 2 0 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|385806218|ref|YP_005842616.1| - 0.38 10.7 8.1 5.9 6.9 0.1 3.6 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS HscB_4_cys PF18256.1 gi|385806218|ref|YP_005842616.1| - 0.4 10.5 0.0 0.4 10.5 0.0 2.7 3 0 0 3 3 2 0 Co-chaperone HscB tetracysteine metal binding motif Zn-ribbon_8 PF09723.10 gi|385806218|ref|YP_005842616.1| - 0.72 10.0 5.9 2.8 8.1 1.5 3.4 3 1 0 3 3 3 0 Zinc ribbon domain zf-ACC PF17848.1 gi|385806218|ref|YP_005842616.1| - 2.5 8.3 8.0 18 5.5 0.1 4.5 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|385806218|ref|YP_005842616.1| - 3.3 7.4 4.7 30 4.3 0.1 3.5 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|385806218|ref|YP_005842616.1| - 3.7 7.0 5.1 6.5 6.2 0.0 3.2 2 1 0 3 3 3 0 Transcription factor zinc-finger HD PF01966.22 gi|385806219|ref|YP_005842617.1| - 0.00049 20.3 0.0 0.0011 19.2 0.0 1.6 1 1 0 1 1 1 1 HD domain Clavanin PF05452.11 gi|385806219|ref|YP_005842617.1| - 0.0023 18.1 0.1 0.0046 17.1 0.1 1.5 1 0 0 1 1 1 1 Clavanin Mannosidase_ig PF17786.1 gi|385806219|ref|YP_005842617.1| - 0.069 13.8 0.0 0.63 10.7 0.0 2.0 2 0 0 2 2 2 0 Mannosidase Ig/CBM-like domain CYTH PF01928.21 gi|385806220|ref|YP_005842618.1| - 1.1e-21 77.6 0.9 1.3e-21 77.3 0.9 1.0 1 0 0 1 1 1 1 CYTH domain DUF3108 PF11306.8 gi|385806220|ref|YP_005842618.1| - 0.2 11.6 0.1 0.25 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3108) Pyr_redox_2 PF07992.14 gi|385806221|ref|YP_005842619.1| - 3.7e-54 183.9 0.8 4.6e-54 183.7 0.8 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385806221|ref|YP_005842619.1| - 1.3e-26 93.6 2.2 7.4e-25 87.8 0.5 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|385806221|ref|YP_005842619.1| - 7e-15 55.4 4.1 2.5e-14 53.6 0.8 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385806221|ref|YP_005842619.1| - 2.3e-07 29.8 2.4 0.0029 16.4 0.0 3.7 3 2 1 4 4 4 3 HI0933-like protein K_oxygenase PF13434.6 gi|385806221|ref|YP_005842619.1| - 6e-06 25.6 0.1 0.015 14.4 0.0 3.1 2 1 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|385806221|ref|YP_005842619.1| - 1e-05 24.8 1.0 0.29 10.1 0.1 3.4 2 1 2 4 4 4 3 FAD binding domain GIDA PF01134.22 gi|385806221|ref|YP_005842619.1| - 5.6e-05 22.4 3.7 4.8 6.2 0.0 4.3 4 1 1 5 5 5 3 Glucose inhibited division protein A Thi4 PF01946.17 gi|385806221|ref|YP_005842619.1| - 0.00012 21.4 0.6 0.015 14.6 0.0 2.4 2 1 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|385806221|ref|YP_005842619.1| - 0.0005 19.4 0.1 0.26 10.5 0.0 2.5 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|385806221|ref|YP_005842619.1| - 0.00076 19.7 0.3 0.48 10.7 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|385806221|ref|YP_005842619.1| - 0.013 14.6 0.1 3.8 6.4 0.1 2.6 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|385806221|ref|YP_005842619.1| - 0.02 14.9 0.3 0.18 11.8 0.0 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|385806221|ref|YP_005842619.1| - 0.031 13.6 0.1 4.2 6.6 0.0 2.9 2 1 1 3 3 3 0 FAD dependent oxidoreductase DAO PF01266.24 gi|385806222|ref|YP_005842620.1| - 4.7e-08 33.0 0.0 0.0058 16.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|385806222|ref|YP_005842620.1| - 1.1e-05 24.8 0.0 0.038 13.1 0.0 2.7 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.17 gi|385806222|ref|YP_005842620.1| - 2.8e-05 23.5 0.1 0.00033 20.0 0.0 2.6 3 1 1 4 4 4 1 Thi4 family NAD_binding_8 PF13450.6 gi|385806222|ref|YP_005842620.1| - 6.2e-05 23.2 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|385806222|ref|YP_005842620.1| - 0.00013 21.3 0.0 0.058 12.6 0.0 2.9 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|385806222|ref|YP_005842620.1| - 0.00079 18.7 0.0 0.011 15.0 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|385806222|ref|YP_005842620.1| - 0.0027 17.1 0.1 0.0099 15.3 0.1 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|385806222|ref|YP_005842620.1| - 0.0036 16.2 0.0 2.7 6.8 0.0 3.1 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|385806222|ref|YP_005842620.1| - 0.018 15.6 0.1 13 6.5 0.0 3.6 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase DUF981 PF06168.11 gi|385806223|ref|YP_005842621.1| - 5.3e-50 169.9 22.7 5.9e-50 169.8 22.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Aminotran_5 PF00266.19 gi|385806224|ref|YP_005842622.1| - 2.1e-125 418.5 0.2 2.4e-125 418.3 0.2 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|385806224|ref|YP_005842622.1| - 7.9e-06 25.3 0.0 1.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|385806224|ref|YP_005842622.1| - 2.7e-05 23.6 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|385806224|ref|YP_005842622.1| - 0.00022 20.6 0.2 0.00054 19.4 0.1 1.6 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|385806224|ref|YP_005842622.1| - 0.00064 18.4 0.0 0.0011 17.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Gp-FAR-1 PF05823.12 gi|385806224|ref|YP_005842622.1| - 0.013 15.8 0.5 0.14 12.5 0.1 2.2 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) SelA PF03841.13 gi|385806224|ref|YP_005842622.1| - 0.014 14.4 1.1 0.033 13.2 0.3 2.1 2 1 0 2 2 2 0 L-seryl-tRNA selenium transferase GDC-P PF02347.16 gi|385806224|ref|YP_005842622.1| - 0.017 14.0 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein TetR_C_10 PF16295.5 gi|385806224|ref|YP_005842622.1| - 0.077 13.3 0.5 0.27 11.5 0.1 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TFA2_Winged_2 PF18121.1 gi|385806224|ref|YP_005842622.1| - 0.15 11.7 0.5 5.9 6.7 0.0 3.4 3 1 1 4 4 4 0 TFA2 Winged helix domain 2 tRNA-synt_1b PF00579.25 gi|385806225|ref|YP_005842623.1| - 5.5e-41 140.8 0.1 1.3e-39 136.3 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) PSK_trans_fac PF07704.11 gi|385806225|ref|YP_005842623.1| - 0.092 13.5 0.1 0.66 10.8 0.0 2.5 2 0 0 2 2 2 0 Rv0623-like transcription factor Toprim_4 PF13662.6 gi|385806226|ref|YP_005842624.1| - 5.5e-11 42.8 0.1 2e-10 41.0 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|385806226|ref|YP_005842624.1| - 4e-08 33.6 0.1 1.8e-07 31.5 0.0 2.2 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|385806226|ref|YP_005842624.1| - 1.4e-07 31.7 0.7 7.5e-07 29.3 0.1 2.4 2 0 0 2 2 2 1 Toprim domain DUF1188 PF06690.11 gi|385806226|ref|YP_005842624.1| - 0.037 13.6 1.2 6.7 6.2 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1188) Glyco_transf_54 PF04666.13 gi|385806226|ref|YP_005842624.1| - 0.13 11.1 0.2 0.18 10.6 0.2 1.2 1 0 0 1 1 1 0 N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region Aldedh PF00171.22 gi|385806226|ref|YP_005842624.1| - 0.17 10.3 1.9 0.38 9.2 0.2 2.0 1 1 0 2 2 2 0 Aldehyde dehydrogenase family Thymidylate_kin PF02223.17 gi|385806227|ref|YP_005842625.1| - 1.8e-38 132.1 0.1 2.3e-38 131.8 0.1 1.1 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|385806227|ref|YP_005842625.1| - 1.8e-06 28.0 1.0 2e-05 24.5 1.0 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|385806227|ref|YP_005842625.1| - 1.5e-05 25.3 0.0 1.9e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|385806227|ref|YP_005842625.1| - 0.00048 20.6 0.2 0.51 10.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|385806227|ref|YP_005842625.1| - 0.0031 18.1 0.2 0.0061 17.1 0.2 1.5 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|385806227|ref|YP_005842625.1| - 0.004 16.4 0.3 0.011 14.9 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain NACHT PF05729.12 gi|385806227|ref|YP_005842625.1| - 0.0043 17.0 0.0 0.0096 15.9 0.0 1.6 2 0 0 2 2 2 1 NACHT domain SRP54 PF00448.22 gi|385806227|ref|YP_005842625.1| - 0.0095 15.6 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SKI PF01202.22 gi|385806227|ref|YP_005842625.1| - 0.015 15.4 0.1 0.54 10.4 0.0 2.4 2 0 0 2 2 2 0 Shikimate kinase NTPase_1 PF03266.15 gi|385806227|ref|YP_005842625.1| - 0.03 14.2 0.2 0.069 13.1 0.1 1.7 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|385806227|ref|YP_005842625.1| - 0.049 13.8 0.0 0.072 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|385806227|ref|YP_005842625.1| - 0.056 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CbiA PF01656.23 gi|385806227|ref|YP_005842625.1| - 0.072 13.2 0.1 0.19 11.8 0.0 1.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|385806227|ref|YP_005842625.1| - 0.092 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|385806227|ref|YP_005842625.1| - 0.099 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|385806227|ref|YP_005842625.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.27 gi|385806227|ref|YP_005842625.1| - 0.13 12.7 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter SelB-wing_2 PF09106.11 gi|385806228|ref|YP_005842626.1| - 0.14 12.3 0.1 26 5.1 0.0 2.3 2 0 0 2 2 2 0 Elongation factor SelB, winged helix PMT_2 PF13231.6 gi|385806229|ref|YP_005842627.1| - 6.2e-06 26.5 15.2 6.2e-06 26.5 15.2 2.5 2 0 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase AsnC_trans_reg PF01037.21 gi|385806230|ref|YP_005842628.1| - 5.6e-16 58.3 0.0 1e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|385806230|ref|YP_005842628.1| - 3.1e-13 49.0 0.5 5.4e-13 48.3 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385806230|ref|YP_005842628.1| - 6.8e-09 35.4 0.0 1e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|385806230|ref|YP_005842628.1| - 1.9e-06 27.7 0.1 3.1e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|385806230|ref|YP_005842628.1| - 4.5e-06 26.4 0.1 7.2e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|385806230|ref|YP_005842628.1| - 0.00021 21.1 0.0 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|385806230|ref|YP_005842628.1| - 0.00029 20.8 0.0 0.00048 20.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385806230|ref|YP_005842628.1| - 0.00041 20.3 0.1 0.00073 19.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain HxlR PF01638.17 gi|385806230|ref|YP_005842628.1| - 0.00043 20.1 0.0 0.00085 19.1 0.0 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_IclR PF09339.10 gi|385806230|ref|YP_005842628.1| - 0.0013 18.5 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|385806230|ref|YP_005842628.1| - 0.0016 18.6 0.0 0.0035 17.5 0.0 1.6 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2250 PF10007.9 gi|385806230|ref|YP_005842628.1| - 0.0027 17.8 0.1 0.0048 17.0 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Mga PF05043.13 gi|385806230|ref|YP_005842628.1| - 0.0039 17.7 0.4 0.0086 16.6 0.4 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain MarR_2 PF12802.7 gi|385806230|ref|YP_005842628.1| - 0.0055 16.6 0.0 0.0099 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|385806230|ref|YP_005842628.1| - 0.0086 16.3 0.1 0.042 14.0 0.1 2.0 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|385806230|ref|YP_005842628.1| - 0.014 15.4 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|385806230|ref|YP_005842628.1| - 0.026 14.7 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-like ligand binding domain HTH_DeoR PF08220.12 gi|385806230|ref|YP_005842628.1| - 0.028 14.2 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RuvB_C PF05491.13 gi|385806230|ref|YP_005842628.1| - 0.031 14.2 0.4 0.068 13.1 0.2 1.7 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain DprA_WH PF17782.1 gi|385806230|ref|YP_005842628.1| - 0.069 13.3 0.0 0.095 12.8 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain HTH_34 PF13601.6 gi|385806230|ref|YP_005842628.1| - 0.098 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Hydrolase_3 PF08282.12 gi|385806231|ref|YP_005842629.1| - 1.5e-23 83.8 1.6 3.7e-15 56.4 0.5 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|385806231|ref|YP_005842629.1| - 9.1e-08 31.9 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|385806231|ref|YP_005842629.1| - 0.0045 17.4 0.2 4.3 7.7 0.0 3.0 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|385806231|ref|YP_005842629.1| - 0.11 12.7 0.0 1.5 9.1 0.0 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DHHA1 PF02272.19 gi|385806232|ref|YP_005842630.1| - 3.4e-07 30.8 0.0 6.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|385806232|ref|YP_005842630.1| - 1.3e-06 28.6 0.0 2.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 DHH family Kindlin_2_N PF18124.1 gi|385806232|ref|YP_005842630.1| - 0.016 15.4 0.2 0.016 15.4 0.2 1.8 2 0 0 2 2 2 0 Kindlin-2 N-terminal domain CoA_binding_2 PF13380.6 gi|385806232|ref|YP_005842630.1| - 0.016 15.7 0.0 0.032 14.7 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain DUF4897 PF16238.5 gi|385806232|ref|YP_005842630.1| - 0.018 14.9 0.1 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) DUF1799 PF08809.11 gi|385806232|ref|YP_005842630.1| - 0.051 13.8 0.5 0.13 12.5 0.5 1.6 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) PHP PF02811.19 gi|385806232|ref|YP_005842630.1| - 0.18 12.1 0.2 0.28 11.5 0.2 1.6 1 1 0 1 1 1 0 PHP domain Epimerase PF01370.21 gi|385806233|ref|YP_005842631.1| - 4.1e-23 82.1 0.0 5.1e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|385806233|ref|YP_005842631.1| - 2.3e-22 79.8 0.1 5.9e-22 78.5 0.1 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|385806233|ref|YP_005842631.1| - 1.1e-13 51.0 0.0 2e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|385806233|ref|YP_005842631.1| - 1.2e-06 27.9 0.0 1e-05 24.9 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|385806233|ref|YP_005842631.1| - 1.9e-06 27.3 0.0 4.5e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|385806233|ref|YP_005842631.1| - 0.0012 17.9 0.0 0.002 17.2 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Cry1Ac_D5 PF17997.1 gi|385806233|ref|YP_005842631.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Insecticidal delta-endotoxin CryIA(c) domain 5 Aminotran_1_2 PF00155.21 gi|385806234|ref|YP_005842632.1| - 2.5e-66 224.3 0.0 3e-66 224.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|385806234|ref|YP_005842632.1| - 1.1e-06 27.4 0.0 1.6e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|385806234|ref|YP_005842632.1| - 3.7e-05 22.9 0.0 0.0013 17.8 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|385806234|ref|YP_005842632.1| - 4.7e-05 22.3 0.0 0.56 8.9 0.0 2.9 2 1 0 2 2 2 2 Orn/Lys/Arg decarboxylase, major domain SHMT PF00464.19 gi|385806234|ref|YP_005842632.1| - 0.001 17.8 0.0 0.0034 16.0 0.0 1.8 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|385806234|ref|YP_005842632.1| - 0.0023 17.3 0.0 0.0065 15.8 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase Glycos_transf_4 PF00953.21 gi|385806235|ref|YP_005842633.1| - 0.016 15.2 2.4 0.019 14.9 2.4 1.3 1 1 0 1 1 1 0 Glycosyl transferase family 4 Ribosomal_S30 PF04758.14 gi|385806236|ref|YP_005842634.1| - 2.5e-09 37.2 1.5 2.6e-09 37.1 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 DUF373 PF04123.13 gi|385806237|ref|YP_005842635.1| - 6.3e-79 265.8 11.2 7.5e-79 265.6 11.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) HEPN_Toprim_N PF18871.1 gi|385806238|ref|YP_005842636.1| - 0.091 12.7 0.3 0.48 10.3 0.2 2.0 1 1 1 2 2 2 0 HEPN/Toprim N-terminal domain 1 TetR_C_24 PF17932.1 gi|385806238|ref|YP_005842636.1| - 0.18 12.1 1.3 9.7 6.5 0.1 2.8 3 1 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain MPM1 PF17234.2 gi|385806239|ref|YP_005842637.1| - 0.057 13.7 0.0 0.064 13.5 0.0 1.0 1 0 0 1 1 1 0 Mitochondrial peculiar membrane protein 1 Fer4_11 PF13247.6 gi|385806239|ref|YP_005842637.1| - 0.14 12.3 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S dicluster domain tRNA-synt_2b PF00587.25 gi|385806240|ref|YP_005842638.1| - 5.6e-42 143.7 0.1 1e-41 142.9 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|385806240|ref|YP_005842638.1| - 1e-11 44.8 0.4 3.4e-11 43.1 0.1 2.1 2 0 0 2 2 2 1 Anticodon binding domain TatD_DNase PF01026.21 gi|385806241|ref|YP_005842639.1| - 3.1e-48 164.4 0.1 3.6e-48 164.2 0.1 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|385806241|ref|YP_005842639.1| - 0.036 13.4 0.1 0.62 9.3 0.0 2.0 1 1 1 2 2 2 0 Amidohydrolase family Metallophos PF00149.28 gi|385806242|ref|YP_005842640.1| - 1.7e-11 45.0 0.1 2.1e-11 44.7 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|385806242|ref|YP_005842640.1| - 5.9e-06 26.6 0.0 0.00012 22.4 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Skp1 PF01466.19 gi|385806242|ref|YP_005842640.1| - 0.076 13.1 0.3 0.17 12.0 0.3 1.6 1 0 0 1 1 1 0 Skp1 family, dimerisation domain Glu-tRNAGln PF02686.15 gi|385806243|ref|YP_005842641.1| - 3.5e-05 24.0 1.4 4.9e-05 23.5 1.4 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Baculo_p48 PF04878.13 gi|385806243|ref|YP_005842641.1| - 0.014 14.4 0.5 0.014 14.3 0.5 1.1 1 0 0 1 1 1 0 Baculovirus P48 protein DUF4358 PF14270.6 gi|385806243|ref|YP_005842641.1| - 0.023 15.0 0.3 0.025 14.9 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) Amidase PF01425.21 gi|385806244|ref|YP_005842642.1| - 9.5e-110 367.6 0.0 1.2e-109 367.3 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.15 gi|385806245|ref|YP_005842643.1| - 6.4e-91 304.5 0.0 8.1e-91 304.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|385806245|ref|YP_005842643.1| - 7.4e-28 97.3 2.4 7.4e-28 97.3 2.4 2.2 3 0 0 3 3 3 1 GatB domain DDRGK PF09756.9 gi|385806245|ref|YP_005842643.1| - 0.012 15.2 0.2 0.012 15.2 0.2 1.7 2 0 0 2 2 2 0 DDRGK domain TPP_enzyme_C PF02775.21 gi|385806246|ref|YP_005842644.1| - 1.7e-24 86.3 0.5 2.4e-24 85.9 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GnsAB_toxin PF08178.11 gi|385806246|ref|YP_005842644.1| - 0.13 12.2 0.4 0.31 11.0 0.4 1.6 1 0 0 1 1 1 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system DXP_synthase_N PF13292.6 gi|385806246|ref|YP_005842644.1| - 0.17 11.1 1.1 0.23 10.6 0.1 1.7 2 1 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|385806247|ref|YP_005842645.1| - 3.6e-68 229.8 3.3 4.7e-68 229.4 3.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|385806247|ref|YP_005842645.1| - 7.4e-23 80.8 0.0 1.5e-22 79.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|385806247|ref|YP_005842645.1| - 0.0044 16.9 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|385806248|ref|YP_005842646.1| - 4.5e-15 54.7 14.3 2.1e-07 30.5 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385806248|ref|YP_005842646.1| - 1.8e-11 44.5 32.6 2.4e-07 31.2 12.0 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385806248|ref|YP_005842646.1| - 8e-10 38.7 6.8 1.2e-09 38.1 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385806248|ref|YP_005842646.1| - 2.1e-09 38.2 8.4 0.00042 21.2 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|385806248|ref|YP_005842646.1| - 5.7e-09 35.6 13.3 0.00025 20.9 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385806248|ref|YP_005842646.1| - 1.8e-08 34.1 14.2 0.00019 21.4 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|385806248|ref|YP_005842646.1| - 2.4e-08 34.0 19.5 2.9e-06 27.3 11.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385806248|ref|YP_005842646.1| - 2.6e-08 33.9 20.6 3e-07 30.4 9.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|385806248|ref|YP_005842646.1| - 1.1e-06 29.0 7.1 1.8e-06 28.3 7.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|385806248|ref|YP_005842646.1| - 0.00013 22.4 9.6 0.0083 16.6 0.5 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|385806248|ref|YP_005842646.1| - 0.00081 19.9 11.2 0.04 14.5 12.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385806248|ref|YP_005842646.1| - 0.00096 19.8 10.0 0.43 11.4 0.3 2.8 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|385806248|ref|YP_005842646.1| - 0.0018 18.6 11.8 0.064 13.8 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|385806248|ref|YP_005842646.1| - 0.023 15.5 10.9 0.034 15.0 1.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DDE_Tnp_1_6 PF13751.6 gi|385806248|ref|YP_005842646.1| - 0.041 14.1 0.6 0.041 14.1 0.6 1.4 2 0 0 2 2 2 0 Transposase DDE domain Fer4_3 PF12798.7 gi|385806248|ref|YP_005842646.1| - 9.3 7.4 16.7 3.5 8.8 5.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.18 gi|385806249|ref|YP_005842647.1| - 5.3e-36 124.3 0.3 6.2e-36 124.1 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POTRA_1 PF08478.10 gi|385806249|ref|YP_005842647.1| - 0.026 14.8 0.0 0.28 11.5 0.0 2.4 2 0 0 2 2 2 0 POTRA domain, FtsQ-type Peptidase_M48 PF01435.18 gi|385806250|ref|YP_005842648.1| - 2.7e-38 131.7 0.0 4.6e-38 131.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|385806250|ref|YP_005842648.1| - 0.00038 19.7 0.0 0.00087 18.6 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 Phage_holin_3_6 PF07332.11 gi|385806250|ref|YP_005842648.1| - 0.027 14.5 1.7 0.027 14.5 1.7 3.4 2 2 1 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4191 PF13829.6 gi|385806250|ref|YP_005842648.1| - 0.39 10.0 1.6 1.2 8.4 1.6 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF962 PF06127.11 gi|385806250|ref|YP_005842648.1| - 0.64 10.1 3.4 25 5.0 0.0 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF962) MMR_HSR1 PF01926.23 gi|385806251|ref|YP_005842649.1| - 8.4e-10 38.7 0.2 4e-08 33.3 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|385806251|ref|YP_005842649.1| - 6.4e-09 35.9 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|385806251|ref|YP_005842649.1| - 1.3e-07 31.2 0.5 0.0029 17.2 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|385806251|ref|YP_005842649.1| - 0.0043 16.6 0.2 0.023 14.2 0.1 2.1 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|385806251|ref|YP_005842649.1| - 0.017 14.7 0.5 0.041 13.5 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|385806251|ref|YP_005842649.1| - 0.027 13.4 0.3 0.11 11.5 0.1 1.9 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|385806251|ref|YP_005842649.1| - 0.08 13.5 0.0 0.37 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arf PF00025.21 gi|385806251|ref|YP_005842649.1| - 0.093 12.2 0.2 0.77 9.2 0.0 2.1 2 0 0 2 2 2 0 ADP-ribosylation factor family Dynamin_N PF00350.23 gi|385806251|ref|YP_005842649.1| - 0.65 10.0 2.7 3 7.9 0.7 2.8 2 1 0 2 2 2 0 Dynamin family HTH_24 PF13412.6 gi|385806253|ref|YP_005842651.1| - 4.2e-06 26.2 1.3 0.00029 20.3 0.1 2.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|385806253|ref|YP_005842651.1| - 0.0013 18.5 0.1 0.092 12.6 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|385806253|ref|YP_005842651.1| - 0.0058 16.5 0.3 0.48 10.3 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|385806253|ref|YP_005842651.1| - 0.011 15.7 0.0 1.4 9.0 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|385806253|ref|YP_005842651.1| - 0.012 15.4 0.0 0.081 12.7 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|385806253|ref|YP_005842651.1| - 0.026 14.5 0.2 0.97 9.4 0.0 2.7 2 0 0 2 2 2 0 HTH domain HTH_40 PF14493.6 gi|385806253|ref|YP_005842651.1| - 0.18 12.3 1.9 0.92 10.0 0.1 2.9 4 1 1 5 5 5 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|385806254|ref|YP_005842652.1| - 9.7e-05 21.9 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|385806254|ref|YP_005842652.1| - 0.00024 20.9 0.1 0.00033 20.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.6 gi|385806254|ref|YP_005842652.1| - 0.00076 19.6 0.0 0.0008 19.5 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation HicA_toxin PF07927.12 gi|385806254|ref|YP_005842652.1| - 0.0062 16.6 0.0 0.038 14.0 0.0 2.0 2 0 0 2 2 2 1 HicA toxin of bacterial toxin-antitoxin, MarR_2 PF12802.7 gi|385806254|ref|YP_005842652.1| - 0.013 15.3 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|385806254|ref|YP_005842652.1| - 0.033 14.1 0.0 6.2 6.8 0.0 2.2 1 1 1 2 2 2 0 MarR family Rrf2 PF02082.20 gi|385806254|ref|YP_005842652.1| - 0.037 14.4 0.0 0.069 13.5 0.1 1.5 1 1 1 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.10 gi|385806254|ref|YP_005842652.1| - 0.054 13.3 0.0 0.14 12.0 0.0 1.7 1 1 1 2 2 2 0 IclR helix-turn-helix domain ATP-grasp_5 PF13549.6 gi|385806255|ref|YP_005842653.1| - 3.3e-77 258.9 0.8 3.7e-77 258.7 0.8 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|385806255|ref|YP_005842653.1| - 3e-05 23.7 1.2 0.00041 20.0 1.2 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|385806255|ref|YP_005842653.1| - 0.00089 18.9 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|385806255|ref|YP_005842653.1| - 0.004 16.8 0.1 0.0089 15.6 0.1 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|385806255|ref|YP_005842653.1| - 0.052 13.3 0.4 0.1 12.3 0.1 1.7 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF948 PF06103.11 gi|385806256|ref|YP_005842654.1| - 8.4e-06 26.0 16.2 0.0013 18.9 0.7 3.9 1 1 0 3 3 3 2 Bacterial protein of unknown function (DUF948) LPP PF04728.13 gi|385806256|ref|YP_005842654.1| - 1.1e-05 25.7 20.2 0.054 13.9 0.1 5.9 4 2 1 5 5 5 3 Lipoprotein leucine-zipper ABC_tran_CTD PF16326.5 gi|385806256|ref|YP_005842654.1| - 0.00011 22.3 5.3 0.00011 22.3 5.3 6.0 2 2 2 4 4 2 1 ABC transporter C-terminal domain Baculo_PEP_C PF04513.12 gi|385806256|ref|YP_005842654.1| - 0.00034 20.7 12.1 0.00091 19.3 2.1 3.4 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus COG5 PF10392.9 gi|385806256|ref|YP_005842654.1| - 0.00042 20.5 29.0 0.25 11.5 1.4 4.4 1 1 2 4 4 4 3 Golgi transport complex subunit 5 Spc7 PF08317.11 gi|385806256|ref|YP_005842654.1| - 0.00074 18.5 13.3 0.00074 18.5 13.3 3.0 1 1 2 3 3 3 3 Spc7 kinetochore protein HsbA PF12296.8 gi|385806256|ref|YP_005842654.1| - 0.0017 18.8 2.2 1.2 9.6 0.1 3.6 1 1 1 3 3 3 1 Hydrophobic surface binding protein A YscO PF07321.12 gi|385806256|ref|YP_005842654.1| - 0.002 18.1 36.4 0.34 10.8 1.4 3.3 3 0 0 3 3 3 3 Type III secretion protein YscO DUF3450 PF11932.8 gi|385806256|ref|YP_005842654.1| - 0.0034 16.7 34.9 0.02 14.2 6.7 3.6 1 1 1 3 3 3 2 Protein of unknown function (DUF3450) NPV_P10 PF05531.12 gi|385806256|ref|YP_005842654.1| - 0.004 17.6 19.3 0.025 15.0 2.6 4.5 2 2 1 3 3 3 1 Nucleopolyhedrovirus P10 protein Hemerythrin PF01814.23 gi|385806256|ref|YP_005842654.1| - 0.0051 17.4 3.7 0.18 12.5 0.7 3.2 2 1 0 2 2 2 1 Hemerythrin HHE cation binding domain MscS_porin PF12795.7 gi|385806256|ref|YP_005842654.1| - 0.0074 15.9 12.7 0.0074 15.9 12.7 3.0 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain MCPsignal PF00015.21 gi|385806256|ref|YP_005842654.1| - 0.0095 15.8 18.6 0.012 15.4 3.9 3.0 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain APG6_N PF17675.1 gi|385806256|ref|YP_005842654.1| - 0.017 15.6 16.5 0.017 15.6 16.5 3.8 1 1 2 3 3 3 0 Apg6 coiled-coil region MbeD_MobD PF04899.12 gi|385806256|ref|YP_005842654.1| - 0.02 15.0 0.6 0.97 9.6 0.0 3.5 2 2 0 3 3 3 0 MbeD/MobD like YabA PF06156.13 gi|385806256|ref|YP_005842654.1| - 0.024 15.3 46.9 0.44 11.2 3.7 4.4 1 1 2 4 4 4 0 Initiation control protein YabA ATG16 PF08614.11 gi|385806256|ref|YP_005842654.1| - 0.026 14.8 44.6 0.16 12.1 8.7 4.0 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) Sec34 PF04136.15 gi|385806256|ref|YP_005842654.1| - 0.028 14.3 3.4 0.028 14.3 3.4 4.2 1 1 3 4 4 4 0 Sec34-like family Spectrin PF00435.21 gi|385806256|ref|YP_005842654.1| - 0.031 14.8 6.9 0.031 14.8 6.9 4.2 1 1 3 4 4 4 0 Spectrin repeat DUF1664 PF07889.12 gi|385806256|ref|YP_005842654.1| - 0.033 14.2 37.3 0.68 10.0 7.0 4.7 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) PI_PP_I PF18363.1 gi|385806256|ref|YP_005842654.1| - 0.039 14.1 23.2 0.096 12.9 0.3 4.2 1 1 3 4 4 4 0 Phosphoinositide phosphatase insertion domain HTH_Tnp_Tc3_1 PF11427.8 gi|385806256|ref|YP_005842654.1| - 0.048 13.5 1.9 4.9 7.1 0.1 2.9 2 0 0 2 2 2 0 Tc3 transposase T3SSipB PF16535.5 gi|385806256|ref|YP_005842654.1| - 0.05 14.1 30.7 0.36 11.3 11.8 3.3 1 1 2 3 3 3 0 Type III cell invasion protein SipB EzrA PF06160.12 gi|385806256|ref|YP_005842654.1| - 0.07 11.3 56.0 0.1 10.7 24.8 2.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Fez1 PF06818.15 gi|385806256|ref|YP_005842654.1| - 0.087 13.3 45.7 0.76 10.2 23.0 2.2 1 1 1 2 2 2 0 Fez1 SlyX PF04102.12 gi|385806256|ref|YP_005842654.1| - 0.12 13.0 20.6 0.46 11.1 3.4 4.9 2 1 1 4 4 4 0 SlyX DUF4407 PF14362.6 gi|385806256|ref|YP_005842654.1| - 0.13 11.5 30.5 2.9 7.2 13.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF4795 PF16043.5 gi|385806256|ref|YP_005842654.1| - 0.25 10.9 51.3 6.2 6.4 29.5 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|385806256|ref|YP_005842654.1| - 0.26 11.3 41.3 0.98 9.4 12.2 3.4 1 1 1 3 3 3 0 Laminin Domain II COG6 PF06419.11 gi|385806256|ref|YP_005842654.1| - 0.34 9.0 37.9 0.021 13.1 5.7 3.3 2 1 1 3 3 3 0 Conserved oligomeric complex COG6 DUF2203 PF09969.9 gi|385806256|ref|YP_005842654.1| - 0.35 11.6 35.6 4.7 7.9 7.8 3.9 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) GAS PF13851.6 gi|385806256|ref|YP_005842654.1| - 0.37 10.1 62.4 0.19 11.1 17.1 3.6 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding ApoO PF09769.9 gi|385806256|ref|YP_005842654.1| - 0.38 10.7 7.4 0.96 9.4 0.4 3.5 1 1 4 5 5 5 0 Apolipoprotein O TMPIT PF07851.13 gi|385806256|ref|YP_005842654.1| - 0.88 8.8 47.5 0.69 9.1 9.9 3.1 1 1 2 3 3 3 0 TMPIT-like protein zf-C4H2 PF10146.9 gi|385806256|ref|YP_005842654.1| - 1.3 9.3 51.8 0.16 12.2 18.2 2.4 1 1 1 2 2 2 0 Zinc finger-containing protein ZapB PF06005.12 gi|385806256|ref|YP_005842654.1| - 1.4 9.4 62.2 0.17 12.4 9.3 5.7 1 1 5 6 6 6 0 Cell division protein ZapB DUF3584 PF12128.8 gi|385806256|ref|YP_005842654.1| - 1.5 6.3 44.3 0.53 7.7 25.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) WXG100 PF06013.12 gi|385806256|ref|YP_005842654.1| - 1.7 8.9 9.2 6.1 7.1 0.2 4.6 3 1 3 6 6 6 0 Proteins of 100 residues with WXG KASH_CCD PF14662.6 gi|385806256|ref|YP_005842654.1| - 1.8 8.3 58.9 0.042 13.7 19.3 2.4 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH Atg14 PF10186.9 gi|385806256|ref|YP_005842654.1| - 2.4 7.2 57.0 0.6 9.1 28.8 3.3 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 COG2 PF06148.11 gi|385806256|ref|YP_005842654.1| - 3.2 7.8 33.9 0.41 10.7 8.7 4.3 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DegS PF05384.11 gi|385806256|ref|YP_005842654.1| - 3.3 7.2 47.9 16 4.9 21.0 4.1 1 1 2 3 3 3 0 Sensor protein DegS DUF745 PF05335.13 gi|385806256|ref|YP_005842654.1| - 3.3 7.4 23.5 0.3 10.8 10.8 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF745) Exonuc_VII_L PF02601.15 gi|385806256|ref|YP_005842654.1| - 3.4 7.2 35.5 0.44 10.1 15.7 2.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit Leu_zip PF15294.6 gi|385806256|ref|YP_005842654.1| - 3.5 7.1 50.0 1 8.8 29.3 2.5 1 1 1 2 2 2 0 Leucine zipper Lebercilin PF15619.6 gi|385806256|ref|YP_005842654.1| - 3.6 7.2 54.3 4.2 7.0 25.0 2.3 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease AAA_13 PF13166.6 gi|385806256|ref|YP_005842654.1| - 4.3 5.9 48.6 12 4.4 48.6 1.7 1 1 0 1 1 1 0 AAA domain Laminin_I PF06008.14 gi|385806256|ref|YP_005842654.1| - 4.3 7.0 42.4 0.59 9.8 16.9 2.7 1 1 1 2 2 2 0 Laminin Domain I Jnk-SapK_ap_N PF09744.9 gi|385806256|ref|YP_005842654.1| - 5.4 7.2 50.9 0.4 10.9 11.3 3.4 1 1 2 3 3 3 0 JNK_SAPK-associated protein-1 IFT57 PF10498.9 gi|385806256|ref|YP_005842654.1| - 6.1 5.7 46.8 0.72 8.8 21.8 3.0 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 TACC_C PF05010.14 gi|385806256|ref|YP_005842654.1| - 6.5 6.5 54.3 1.6 8.5 6.4 3.9 1 1 3 4 4 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal SpecificRecomb PF10136.9 gi|385806256|ref|YP_005842654.1| - 6.9 4.9 7.7 2.2 6.5 3.4 1.9 1 1 1 2 2 2 0 Site-specific recombinase Mod_r PF07200.13 gi|385806256|ref|YP_005842654.1| - 7.2 6.7 52.2 3.7 7.7 10.7 4.5 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein TPR_MLP1_2 PF07926.12 gi|385806256|ref|YP_005842654.1| - 9.1 6.4 52.1 0.3 11.1 17.3 4.8 1 1 4 5 5 5 0 TPR/MLP1/MLP2-like protein Asparaginase PF00710.20 gi|385806257|ref|YP_005842655.1| - 1.6e-58 197.4 0.0 3.2e-58 196.4 0.0 1.5 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|385806257|ref|YP_005842655.1| - 1.5e-31 108.9 0.0 2.7e-31 108.1 0.0 1.4 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|385806257|ref|YP_005842655.1| - 1.4e-16 59.5 1.7 2.7e-16 58.6 1.7 1.5 1 0 0 1 1 1 1 GatD N-terminal domain Pox_VP8_L4R PF04498.12 gi|385806257|ref|YP_005842655.1| - 0.029 14.0 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 Poxvirus nucleic acid binding protein VP8/L4R GatB_N PF02934.15 gi|385806258|ref|YP_005842656.1| - 1.3e-69 234.7 0.1 1.7e-69 234.2 0.1 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|385806258|ref|YP_005842656.1| - 1.6e-22 80.0 2.7 1.6e-22 80.0 2.7 2.7 3 0 0 3 3 3 1 GatB domain GAD PF02938.14 gi|385806258|ref|YP_005842656.1| - 9.1e-12 45.1 0.3 3.7e-11 43.1 0.0 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|385806258|ref|YP_005842656.1| - 0.00053 20.1 0.7 0.00053 20.1 0.7 2.2 2 0 0 2 2 2 1 Yqey-like protein DUF4435 PF14491.6 gi|385806258|ref|YP_005842656.1| - 0.0038 17.1 1.5 0.015 15.2 0.1 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF4435) Beta_protein PF14350.6 gi|385806258|ref|YP_005842656.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Beta protein EcoEI_R_C PF08463.10 gi|385806258|ref|YP_005842656.1| - 0.27 11.3 2.6 3.7 7.6 0.2 2.9 3 0 0 3 3 3 0 EcoEI R protein C-terminal Nop PF01798.18 gi|385806259|ref|YP_005842657.1| - 6.6e-72 241.7 0.0 9.7e-72 241.2 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|385806260|ref|YP_005842658.1| - 3.4e-101 337.1 0.1 3.9e-101 336.9 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|385806260|ref|YP_005842658.1| - 0.0016 18.2 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|385806260|ref|YP_005842658.1| - 0.01 15.6 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit GP24_25 PF17388.2 gi|385806260|ref|YP_005842658.1| - 0.088 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 Methyltr_RsmB-F PF01189.17 gi|385806260|ref|YP_005842658.1| - 0.14 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DUF61 PF01886.16 gi|385806261|ref|YP_005842659.1| - 1.9e-22 79.7 3.8 2.3e-22 79.4 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 HTH_3 PF01381.22 gi|385806262|ref|YP_005842660.1| - 4.2e-10 39.5 0.1 2.4e-09 37.1 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|385806262|ref|YP_005842660.1| - 3.1e-08 33.5 2.7 4e-08 33.1 0.2 2.6 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|385806262|ref|YP_005842660.1| - 4.7e-06 26.9 0.0 1.9e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|385806262|ref|YP_005842660.1| - 0.003 17.4 0.1 0.0081 16.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|385806262|ref|YP_005842660.1| - 0.0039 17.1 0.4 0.12 12.4 0.0 3.3 3 0 0 3 3 3 1 HTH domain DUF1542 PF07564.11 gi|385806262|ref|YP_005842660.1| - 0.014 15.5 2.7 0.037 14.1 2.7 1.7 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1542) HTH_Crp_2 PF13545.6 gi|385806262|ref|YP_005842660.1| - 0.048 13.6 0.0 1.6 8.8 0.0 2.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain UPF0122 PF04297.14 gi|385806262|ref|YP_005842660.1| - 0.11 12.8 0.1 0.11 12.8 0.1 3.5 3 1 1 4 4 4 0 Putative helix-turn-helix protein, YlxM / p13 like TetR_N PF00440.23 gi|385806262|ref|YP_005842660.1| - 0.15 11.9 0.0 0.43 10.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family TMCCDC2 PF15844.5 gi|385806262|ref|YP_005842660.1| - 0.16 11.9 2.0 0.35 10.8 2.0 1.6 1 0 0 1 1 1 0 Transmembrane and coiled-coil domain-containing protein 2 HTH_22 PF13309.6 gi|385806262|ref|YP_005842660.1| - 0.48 10.6 4.6 0.91 9.6 0.0 3.3 4 0 0 4 4 4 0 HTH domain NTPase_1 PF03266.15 gi|385806263|ref|YP_005842661.1| - 1.1e-32 113.3 0.0 1.2e-32 113.1 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|385806263|ref|YP_005842661.1| - 0.00051 20.5 0.0 0.00092 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|385806263|ref|YP_005842661.1| - 0.00066 19.3 0.0 0.0022 17.6 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|385806263|ref|YP_005842661.1| - 0.002 18.6 0.2 0.0043 17.5 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|385806263|ref|YP_005842661.1| - 0.0027 17.4 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|385806263|ref|YP_005842661.1| - 0.0041 17.0 0.1 0.0072 16.3 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|385806263|ref|YP_005842661.1| - 0.0077 16.0 0.0 0.0096 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|385806263|ref|YP_005842661.1| - 0.0098 15.9 0.2 0.022 14.7 0.1 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|385806263|ref|YP_005842661.1| - 0.012 15.2 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|385806263|ref|YP_005842661.1| - 0.02 15.2 0.1 0.035 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|385806263|ref|YP_005842661.1| - 0.024 13.8 0.0 0.045 12.9 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain MeaB PF03308.16 gi|385806263|ref|YP_005842661.1| - 0.024 13.6 0.1 0.032 13.2 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB TsaE PF02367.17 gi|385806263|ref|YP_005842661.1| - 0.038 14.0 0.1 0.068 13.2 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|385806263|ref|YP_005842661.1| - 0.068 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|385806263|ref|YP_005842661.1| - 0.079 12.1 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_28 PF13521.6 gi|385806263|ref|YP_005842661.1| - 0.086 13.1 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|385806263|ref|YP_005842661.1| - 0.11 12.9 0.0 0.26 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|385806263|ref|YP_005842661.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385806263|ref|YP_005842661.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|385806263|ref|YP_005842661.1| - 0.13 12.6 0.2 0.17 12.2 0.2 1.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|385806263|ref|YP_005842661.1| - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|385806263|ref|YP_005842661.1| - 0.16 12.5 1.2 0.26 11.8 0.2 1.7 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|385806263|ref|YP_005842661.1| - 0.19 11.1 0.1 0.29 10.5 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TRM PF02005.16 gi|385806264|ref|YP_005842662.1| - 5e-79 266.2 0.1 8e-79 265.5 0.1 1.3 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|385806264|ref|YP_005842662.1| - 0.00045 20.0 0.1 0.00074 19.3 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|385806264|ref|YP_005842662.1| - 0.033 13.6 0.5 0.043 13.2 0.0 1.4 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2067 PF09840.9 gi|385806264|ref|YP_005842662.1| - 0.05 13.2 0.3 0.05 13.2 0.3 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) DUF3029 PF11230.8 gi|385806264|ref|YP_005842662.1| - 0.071 11.5 0.1 0.19 10.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3029) RNA_pol_Rpc34 PF05158.12 gi|385806265|ref|YP_005842663.1| - 0.0004 19.9 7.2 0.038 13.4 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit TrmB PF01978.19 gi|385806265|ref|YP_005842663.1| - 0.0023 17.8 0.2 0.0036 17.1 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|385806265|ref|YP_005842663.1| - 0.0048 17.5 0.2 0.01 16.5 0.1 1.5 2 0 0 2 2 2 1 Replication protein A C terminal B-block_TFIIIC PF04182.12 gi|385806265|ref|YP_005842663.1| - 0.0057 16.8 1.3 0.0059 16.7 1.3 1.3 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC FAM91_N PF14647.6 gi|385806265|ref|YP_005842663.1| - 0.037 13.3 0.1 0.052 12.8 0.1 1.2 1 0 0 1 1 1 0 FAM91 N-terminus Prenyltransf PF01255.19 gi|385806266|ref|YP_005842664.1| - 2.9e-73 246.1 0.3 3.6e-73 245.8 0.3 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Ribosomal_S8e PF01201.22 gi|385806267|ref|YP_005842665.1| - 1.4e-26 93.3 4.3 1.5e-26 93.2 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Lyx_isomer PF07385.12 gi|385806267|ref|YP_005842665.1| - 0.056 12.7 0.1 0.059 12.6 0.1 1.2 1 0 0 1 1 1 0 D-lyxose isomerase EMG1 PF03587.14 gi|385806267|ref|YP_005842665.1| - 0.079 12.6 0.1 0.091 12.4 0.1 1.1 1 0 0 1 1 1 0 EMG1/NEP1 methyltransferase SRP19 PF01922.17 gi|385806268|ref|YP_005842666.1| - 2.1e-18 67.0 0.1 2.4e-18 66.8 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein DUF1431 PF07248.12 gi|385806268|ref|YP_005842666.1| - 0.051 13.8 1.5 0.44 10.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1431) CppA_N PF14506.6 gi|385806269|ref|YP_005842667.1| - 0.011 15.8 0.3 0.06 13.4 0.1 2.3 2 0 0 2 2 2 0 CppA N-terminal FmrO PF07091.11 gi|385806269|ref|YP_005842667.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.5 1 1 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Gln-synt_C PF00120.24 gi|385806270|ref|YP_005842668.1| - 2e-116 388.8 0.0 2.3e-116 388.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|385806270|ref|YP_005842668.1| - 9.2e-17 60.6 0.0 1.7e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain MazE_antitoxin PF04014.18 gi|385806271|ref|YP_005842669.1| - 2.4e-08 33.7 0.3 5.1e-08 32.7 0.3 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin HHH_2 PF12826.7 gi|385806271|ref|YP_005842669.1| - 0.028 14.5 1.4 4 7.6 0.1 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix motif DUF1296 PF06972.11 gi|385806271|ref|YP_005842669.1| - 0.12 12.5 1.6 0.5 10.5 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1296) DUF1947 PF09183.10 gi|385806271|ref|YP_005842669.1| - 0.45 10.8 5.2 0.36 11.2 2.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) TFIIB PF00382.19 gi|385806272|ref|YP_005842670.1| - 2.4e-19 69.1 0.4 6.8e-10 38.9 0.0 2.6 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|385806272|ref|YP_005842670.1| - 2.2e-05 23.8 0.1 4.1e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|385806272|ref|YP_005842670.1| - 0.068 12.9 0.1 0.17 11.6 0.1 1.6 1 1 1 2 2 2 0 Cyclin, N-terminal domain Gar1 PF04410.14 gi|385806273|ref|YP_005842671.1| - 3.8e-09 36.5 0.1 4.3e-09 36.3 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region tRNA-synt_1 PF00133.22 gi|385806274|ref|YP_005842672.1| - 2.2e-52 178.1 5.1 2.9e-50 171.1 5.1 3.2 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|385806274|ref|YP_005842672.1| - 6.5e-24 84.4 4.0 1.3e-12 47.2 0.0 3.8 3 1 1 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|385806274|ref|YP_005842672.1| - 2.8e-17 63.1 4.3 1e-16 61.3 2.6 2.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|385806274|ref|YP_005842672.1| - 1.1e-14 54.5 0.4 1.4e-08 34.5 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|385806274|ref|YP_005842672.1| - 4.7e-09 36.0 0.0 9.7e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 Orn_Arg_deC_N PF02784.16 gi|385806275|ref|YP_005842673.1| - 3.9e-46 157.4 0.0 5.2e-46 157.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|385806275|ref|YP_005842673.1| - 1.3e-26 92.7 0.0 1.3e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain tRNA_edit PF04073.15 gi|385806276|ref|YP_005842674.1| - 6.4e-24 84.4 0.0 8e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain CxxCxxCC PF03692.15 gi|385806277|ref|YP_005842675.1| - 2.7e-09 37.6 0.7 4.3e-09 36.9 0.7 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DegT_DnrJ_EryC1 PF01041.17 gi|385806278|ref|YP_005842676.1| - 1.5e-127 425.9 0.1 1.7e-127 425.7 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|385806278|ref|YP_005842676.1| - 5.7e-07 29.0 0.1 8.3e-07 28.5 0.1 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|385806278|ref|YP_005842676.1| - 1.9e-05 23.8 0.5 7.4e-05 21.9 0.1 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|385806278|ref|YP_005842676.1| - 0.0029 17.0 1.4 0.012 14.9 1.4 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase DUF1967 PF09269.11 gi|385806278|ref|YP_005842676.1| - 0.051 13.5 0.2 0.18 11.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) SO_alpha_A3 PF17806.1 gi|385806279|ref|YP_005842677.1| - 5e-17 62.0 0.0 1.2e-16 60.8 0.0 1.7 2 0 0 2 2 2 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|385806279|ref|YP_005842677.1| - 1.6e-08 34.7 0.7 3.5e-08 33.6 0.1 2.0 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain DAO PF01266.24 gi|385806280|ref|YP_005842678.1| - 2.7e-53 181.8 0.0 3.3e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|385806280|ref|YP_005842678.1| - 0.00015 20.7 0.2 0.0064 15.2 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|385806280|ref|YP_005842678.1| - 0.00062 19.1 0.7 0.012 14.9 0.7 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|385806280|ref|YP_005842678.1| - 0.0033 17.4 0.1 0.55 10.2 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|385806280|ref|YP_005842678.1| - 0.0088 15.3 0.7 0.22 10.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|385806280|ref|YP_005842678.1| - 0.022 15.0 0.1 0.19 12.0 0.2 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|385806280|ref|YP_005842678.1| - 0.06 12.4 0.1 2.6 7.0 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 gi|385806280|ref|YP_005842678.1| - 0.12 11.5 0.7 12 5.0 0.0 2.2 2 0 0 2 2 2 0 Thi4 family Pyr_redox PF00070.27 gi|385806280|ref|YP_005842678.1| - 0.13 12.9 1.9 2.8 8.6 0.2 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DNA_pol_B PF00136.21 gi|385806281|ref|YP_005842679.1| - 6.1e-12 45.0 0.1 2.2e-11 43.2 0.0 1.8 2 1 0 2 2 2 1 DNA polymerase family B RecA PF00154.21 gi|385806283|ref|YP_005842681.1| - 0.00055 19.5 0.0 0.00077 19.0 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein PCNA_N PF00705.18 gi|385806284|ref|YP_005842682.1| - 1.8e-16 60.0 0.2 3.8e-16 59.0 0.2 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|385806284|ref|YP_005842682.1| - 4.8e-09 36.5 0.6 6.1e-07 29.7 0.0 2.3 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|385806284|ref|YP_005842682.1| - 9.5e-09 35.1 0.4 2.1e-08 33.9 0.3 1.7 1 1 0 1 1 1 1 Rad9 Pih1_fungal_CS PF18482.1 gi|385806284|ref|YP_005842682.1| - 0.02 15.4 1.3 0.092 13.3 0.1 2.5 2 1 0 2 2 2 0 Fungal Pih1 CS domain Phage_integrase PF00589.22 gi|385806285|ref|YP_005842683.1| - 2.9e-32 111.8 0.1 1.3e-31 109.6 0.1 2.2 2 1 0 2 2 2 1 Phage integrase family zinc_ribbon_2 PF13240.6 gi|385806285|ref|YP_005842683.1| - 3.2e-09 36.2 7.4 5.8e-09 35.4 7.4 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|385806285|ref|YP_005842683.1| - 9.8e-08 31.1 4.2 1.7e-07 30.4 4.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_1 PF02899.17 gi|385806285|ref|YP_005842683.1| - 3.8e-07 30.3 1.2 8.2e-06 26.0 1.1 2.9 2 2 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|385806285|ref|YP_005842683.1| - 6.2e-07 29.8 1.8 3.5e-05 24.2 0.1 3.2 2 1 2 4 4 4 1 Phage integrase, N-terminal SAM-like domain DZR PF12773.7 gi|385806285|ref|YP_005842683.1| - 6.4e-06 26.1 0.3 1.1e-05 25.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|385806285|ref|YP_005842683.1| - 1.8e-05 25.4 0.8 3.5e-05 24.5 0.8 1.5 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|385806285|ref|YP_005842683.1| - 5.1e-05 23.3 4.5 8.9e-05 22.5 4.5 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|385806285|ref|YP_005842683.1| - 0.027 14.4 4.0 1.5 8.8 0.6 2.4 2 0 0 2 2 2 0 Nudix N-terminal NblA PF04485.12 gi|385806285|ref|YP_005842683.1| - 0.053 13.9 0.0 0.15 12.5 0.0 1.8 1 0 0 1 1 1 0 Phycobilisome degradation protein nblA OrfB_Zn_ribbon PF07282.11 gi|385806285|ref|YP_005842683.1| - 0.079 12.9 1.2 18 5.3 0.0 3.0 2 1 1 3 3 3 0 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|385806285|ref|YP_005842683.1| - 0.079 12.6 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DHHC PF01529.20 gi|385806285|ref|YP_005842683.1| - 0.19 11.8 0.3 0.36 10.9 0.3 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase A2L_zn_ribbon PF08792.10 gi|385806285|ref|YP_005842683.1| - 0.44 10.3 2.2 14 5.6 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.11 gi|385806285|ref|YP_005842683.1| - 0.48 10.1 3.3 6.8 6.5 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain YacG PF03884.14 gi|385806285|ref|YP_005842683.1| - 1.7 8.5 4.3 3.5 7.4 4.3 1.5 1 0 0 1 1 1 0 DNA gyrase inhibitor YacG CBS PF00571.28 gi|385806286|ref|YP_005842684.1| - 1.8e-31 108.3 10.4 1.6e-10 41.3 0.5 4.1 4 0 0 4 4 4 4 CBS domain DisA_N PF02457.16 gi|385806286|ref|YP_005842684.1| - 0.025 14.1 0.1 6.9 6.3 0.1 2.4 2 0 0 2 2 2 0 DisA bacterial checkpoint controller nucleotide-binding PIN_5 PF08745.11 gi|385806287|ref|YP_005842685.1| - 1.3e-49 168.4 2.4 1.5e-49 168.2 2.4 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease DUF5333 PF17267.2 gi|385806287|ref|YP_005842685.1| - 0.053 13.7 0.1 0.88 9.8 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5333) ComA PF02679.15 gi|385806287|ref|YP_005842685.1| - 0.054 13.0 0.2 0.068 12.6 0.2 1.2 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) DNA_pol3_a_NII PF11490.8 gi|385806287|ref|YP_005842685.1| - 0.27 11.1 4.4 0.23 11.4 1.9 1.8 1 1 1 2 2 2 0 DNA polymerase III polC-type N-terminus II Lig_C PF18330.1 gi|385806288|ref|YP_005842686.1| - 4.4e-22 78.4 4.4 1.2e-21 77.0 4.4 1.7 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|385806288|ref|YP_005842686.1| - 3.4e-16 60.0 1.7 7e-16 59.0 1.7 1.5 1 0 0 1 1 1 1 RNA ligase UPF0175 PF03683.13 gi|385806288|ref|YP_005842686.1| - 0.042 13.6 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) DUF996 PF06195.13 gi|385806289|ref|YP_005842687.1| - 5.2e-33 114.2 26.5 5.2e-33 114.2 26.5 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF2371 PF10177.9 gi|385806289|ref|YP_005842687.1| - 0.16 12.1 0.1 0.16 12.1 0.1 2.9 2 2 1 3 3 3 0 Uncharacterised conserved protein (DUF2371) Bac_export_2 PF01312.19 gi|385806289|ref|YP_005842687.1| - 3.9 6.6 13.3 4.4 6.4 12.7 1.4 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family 2-Hacid_dh_C PF02826.19 gi|385806290|ref|YP_005842688.1| - 4.4e-61 205.3 0.0 6.8e-61 204.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|385806290|ref|YP_005842688.1| - 6.3e-25 87.4 0.0 7.3e-25 87.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|385806290|ref|YP_005842688.1| - 5.2e-10 39.7 0.2 4.6e-09 36.6 0.1 2.4 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|385806290|ref|YP_005842688.1| - 1.7e-06 28.4 0.1 6e-06 26.6 0.1 1.8 2 0 0 2 2 2 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|385806290|ref|YP_005842688.1| - 0.00098 19.7 0.5 0.0022 18.5 0.1 1.9 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|385806290|ref|YP_005842688.1| - 0.002 17.7 0.1 0.035 13.7 0.1 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|385806290|ref|YP_005842688.1| - 0.0064 15.8 0.7 0.016 14.5 0.2 2.0 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|385806290|ref|YP_005842688.1| - 0.0095 16.0 0.7 0.032 14.3 0.7 1.9 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|385806290|ref|YP_005842688.1| - 0.011 15.6 0.2 0.031 14.2 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|385806290|ref|YP_005842688.1| - 0.025 14.6 0.4 0.078 12.9 0.1 2.1 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|385806290|ref|YP_005842688.1| - 0.036 14.6 0.0 0.11 13.1 0.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|385806290|ref|YP_005842688.1| - 0.13 11.6 0.8 0.52 9.6 0.7 1.8 1 1 1 2 2 2 0 ThiF family GFO_IDH_MocA PF01408.22 gi|385806290|ref|YP_005842688.1| - 0.16 12.8 1.3 11 6.9 0.8 2.9 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Ldh_2 PF02615.14 gi|385806291|ref|YP_005842689.1| - 1.3e-110 369.7 0.1 1.5e-110 369.5 0.1 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase IL7 PF01415.16 gi|385806292|ref|YP_005842690.1| - 0.051 13.6 0.2 0.097 12.7 0.2 1.4 1 0 0 1 1 1 0 Interleukin 7/9 family TBD PF12845.7 gi|385806293|ref|YP_005842691.1| - 0.0046 16.8 1.0 0.25 11.3 0.4 2.8 2 0 0 2 2 2 1 TBD domain RHH_7 PF16777.5 gi|385806293|ref|YP_005842691.1| - 0.0064 16.8 0.6 0.019 15.3 0.0 2.0 2 0 0 2 2 1 1 Transcriptional regulator, RHH-like, CopG DUF3450 PF11932.8 gi|385806293|ref|YP_005842691.1| - 0.0076 15.6 4.3 0.0076 15.6 4.3 1.7 2 1 0 2 2 1 1 Protein of unknown function (DUF3450) RPW8 PF05659.11 gi|385806293|ref|YP_005842691.1| - 0.0077 15.9 2.3 0.0077 15.9 2.3 2.0 2 0 0 2 2 2 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 HAUS6_N PF14661.6 gi|385806293|ref|YP_005842691.1| - 0.035 13.7 6.7 0.023 14.3 4.8 1.6 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus ATG2_CAD PF13329.6 gi|385806293|ref|YP_005842691.1| - 0.037 13.7 1.4 0.037 13.7 0.2 1.6 2 0 0 2 2 2 0 Autophagy-related protein 2 CAD motif T2SSM PF04612.12 gi|385806293|ref|YP_005842691.1| - 0.045 13.8 0.7 0.21 11.7 0.1 2.2 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein M DUF1664 PF07889.12 gi|385806293|ref|YP_005842691.1| - 0.051 13.6 2.3 0.12 12.4 2.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|385806293|ref|YP_005842691.1| - 0.051 13.6 7.0 0.029 14.4 4.3 1.9 2 0 0 2 2 2 0 Laminin Domain II Spc7 PF08317.11 gi|385806293|ref|YP_005842691.1| - 0.06 12.2 12.8 0.036 13.0 10.5 1.7 1 1 1 2 2 2 0 Spc7 kinetochore protein LXG PF04740.12 gi|385806293|ref|YP_005842691.1| - 0.079 12.7 6.6 0.038 13.7 3.7 1.9 2 0 0 2 2 2 0 LXG domain of WXG superfamily Med3 PF11593.8 gi|385806293|ref|YP_005842691.1| - 0.15 11.2 2.8 0.22 10.7 2.8 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal APG6_N PF17675.1 gi|385806293|ref|YP_005842691.1| - 0.23 12.0 9.6 0.094 13.2 6.8 1.8 2 0 0 2 2 2 0 Apg6 coiled-coil region Prominin PF05478.11 gi|385806293|ref|YP_005842691.1| - 0.23 9.4 5.3 0.36 8.7 5.3 1.2 1 0 0 1 1 1 0 Prominin Med2 PF11214.8 gi|385806293|ref|YP_005842691.1| - 0.38 10.9 8.3 0.54 10.4 6.6 2.0 2 0 0 2 2 2 0 Mediator complex subunit 2 STN1_2 PF09170.10 gi|385806293|ref|YP_005842691.1| - 0.4 10.9 6.1 0.25 11.5 4.0 1.7 2 0 0 2 2 2 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 NPV_P10 PF05531.12 gi|385806293|ref|YP_005842691.1| - 0.71 10.4 3.6 0.61 10.6 1.8 1.9 2 0 0 2 2 1 0 Nucleopolyhedrovirus P10 protein bZIP_1 PF00170.21 gi|385806293|ref|YP_005842691.1| - 0.82 9.8 7.5 0.49 10.5 0.9 2.9 2 0 0 2 2 2 0 bZIP transcription factor Atg14 PF10186.9 gi|385806293|ref|YP_005842691.1| - 0.83 8.7 5.7 1.3 8.0 5.7 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CENP-F_leu_zip PF10473.9 gi|385806293|ref|YP_005842691.1| - 0.88 9.6 13.2 0.091 12.8 8.6 1.7 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DDHD PF02862.17 gi|385806293|ref|YP_005842691.1| - 1.1 9.4 3.8 2.1 8.5 3.9 1.4 1 1 1 2 2 2 0 DDHD domain TMPIT PF07851.13 gi|385806293|ref|YP_005842691.1| - 1.2 8.3 7.6 0.48 9.6 5.1 1.6 2 0 0 2 2 2 0 TMPIT-like protein Allexi_40kDa PF05549.11 gi|385806293|ref|YP_005842691.1| - 1.2 8.6 3.4 0.95 8.9 2.2 1.4 2 0 0 2 2 1 0 Allexivirus 40kDa protein Snapin_Pallidin PF14712.6 gi|385806293|ref|YP_005842691.1| - 2 8.9 8.8 0.14 12.5 1.3 2.8 2 1 1 3 3 2 0 Snapin/Pallidin YabA PF06156.13 gi|385806293|ref|YP_005842691.1| - 2.1 9.0 9.0 0.57 10.8 2.8 2.7 2 1 1 3 3 3 0 Initiation control protein YabA DUF724 PF05266.14 gi|385806293|ref|YP_005842691.1| - 2.2 8.1 13.0 0.64 9.8 8.9 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF724) Fib_alpha PF08702.10 gi|385806293|ref|YP_005842691.1| - 2.7 8.2 7.8 1.3 9.2 4.1 2.2 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family 60KD_IMP PF02096.20 gi|385806293|ref|YP_005842691.1| - 4.2 7.3 5.2 9.5 6.1 1.3 2.5 2 1 0 2 2 2 0 60Kd inner membrane protein Spore_III_AB PF09548.10 gi|385806293|ref|YP_005842691.1| - 4.7 7.3 7.8 2.3 8.3 0.4 2.7 1 1 2 3 3 3 0 Stage III sporulation protein AB (spore_III_AB) DUF2203 PF09969.9 gi|385806293|ref|YP_005842691.1| - 7.5 7.3 8.7 1.9 9.2 2.6 2.5 2 1 1 3 3 2 0 Uncharacterized conserved protein (DUF2203) ADIP PF11559.8 gi|385806293|ref|YP_005842691.1| - 7.5 6.6 15.0 2 8.5 3.1 2.5 2 1 1 3 3 2 0 Afadin- and alpha -actinin-Binding Snf7 PF03357.21 gi|385806294|ref|YP_005842692.1| - 7e-05 22.5 6.8 8.6e-05 22.2 6.8 1.1 1 0 0 1 1 1 1 Snf7 Filament PF00038.21 gi|385806294|ref|YP_005842692.1| - 0.034 13.7 4.5 0.061 12.9 4.5 1.5 1 1 0 1 1 1 0 Intermediate filament protein Swi5 PF07061.11 gi|385806294|ref|YP_005842692.1| - 1.5 8.9 5.5 0.52 10.4 2.3 1.8 2 0 0 2 2 2 0 Swi5 ABC2_membrane_3 PF12698.7 gi|385806295|ref|YP_005842693.1| - 3.7e-26 92.1 54.6 4.3e-26 91.9 54.6 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|385806295|ref|YP_005842693.1| - 7.8e-19 68.0 26.6 1.2e-18 67.4 26.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|385806295|ref|YP_005842693.1| - 7.2e-06 25.6 46.9 0.00029 20.3 26.5 3.6 1 1 2 3 3 3 2 ABC-2 type transporter TPPK_C PF12555.8 gi|385806295|ref|YP_005842693.1| - 0.011 15.7 1.9 0.038 14.0 1.9 2.0 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal ABC_tran PF00005.27 gi|385806296|ref|YP_005842694.1| - 5.4e-31 107.9 0.0 7.3e-31 107.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385806296|ref|YP_005842694.1| - 2.3e-10 40.8 0.2 9e-05 22.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|385806296|ref|YP_005842694.1| - 0.00014 21.7 0.1 0.00018 21.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|385806296|ref|YP_005842694.1| - 0.00038 20.2 0.0 0.00066 19.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|385806296|ref|YP_005842694.1| - 0.0024 18.1 0.0 0.0041 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|385806296|ref|YP_005842694.1| - 0.0026 17.7 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|385806296|ref|YP_005842694.1| - 0.003 18.1 1.1 0.0042 17.6 1.1 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|385806296|ref|YP_005842694.1| - 0.0091 16.4 0.1 0.064 13.7 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|385806296|ref|YP_005842694.1| - 0.017 14.7 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385806296|ref|YP_005842694.1| - 0.024 14.6 0.0 0.055 13.4 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase MukB PF04310.12 gi|385806296|ref|YP_005842694.1| - 0.055 13.3 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal ATPase_2 PF01637.18 gi|385806296|ref|YP_005842694.1| - 0.069 13.1 0.5 0.22 11.4 0.1 1.9 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|385806296|ref|YP_005842694.1| - 0.078 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|385806296|ref|YP_005842694.1| - 0.11 12.0 0.6 1.5 8.2 0.1 2.2 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.8 gi|385806296|ref|YP_005842694.1| - 0.11 12.4 0.2 0.22 11.5 0.2 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_28 PF13521.6 gi|385806296|ref|YP_005842694.1| - 0.12 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|385806296|ref|YP_005842694.1| - 0.13 12.9 0.0 0.34 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|385806296|ref|YP_005842694.1| - 0.16 11.6 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Ribosomal_S13_N PF08069.12 gi|385806297|ref|YP_005842695.1| - 1.1e-25 89.4 0.2 2.9e-25 88.1 0.1 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|385806297|ref|YP_005842695.1| - 1.7e-15 57.0 0.2 2.4e-15 56.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S19e PF01090.19 gi|385806298|ref|YP_005842696.1| - 3.7e-49 165.9 0.0 4.3e-49 165.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Rrf2 PF02082.20 gi|385806298|ref|YP_005842696.1| - 0.049 14.0 0.1 0.12 12.7 0.1 1.7 1 1 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|385806298|ref|YP_005842696.1| - 0.05 13.5 0.0 0.28 11.1 0.0 2.3 3 0 0 3 3 3 0 MarR family HTH_12 PF08461.10 gi|385806298|ref|YP_005842696.1| - 0.06 13.3 0.0 0.91 9.5 0.0 2.5 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain Ribosomal_S25 PF03297.15 gi|385806298|ref|YP_005842696.1| - 0.11 12.7 0.1 0.3 11.3 0.0 1.8 2 0 0 2 2 2 0 S25 ribosomal protein dsDNA_bind PF01984.20 gi|385806299|ref|YP_005842697.1| - 1.6e-26 92.7 16.2 2e-26 92.4 16.2 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.11 gi|385806299|ref|YP_005842697.1| - 0.063 12.6 12.4 0.069 12.4 12.4 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 MMTV_SAg PF01054.17 gi|385806299|ref|YP_005842697.1| - 8.4 5.9 6.7 3.2 7.3 2.0 2.0 1 1 0 2 2 2 0 Mouse mammary tumour virus superantigen Ribosomal_L39 PF00832.20 gi|385806300|ref|YP_005842698.1| - 6.5e-20 70.5 11.9 7.5e-20 70.3 11.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein REV PF00424.18 gi|385806300|ref|YP_005842698.1| - 0.019 15.0 0.7 0.02 14.9 0.7 1.0 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) Ribosomal_L31e PF01198.19 gi|385806301|ref|YP_005842699.1| - 2e-12 47.1 1.2 2e-12 47.1 1.2 2.1 1 1 1 2 2 2 1 Ribosomal protein L31e DUF3612 PF12268.8 gi|385806301|ref|YP_005842699.1| - 0.06 13.5 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3612) eIF-6 PF01912.18 gi|385806302|ref|YP_005842700.1| - 2.7e-60 203.2 7.2 3.4e-60 202.8 7.2 1.2 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|385806304|ref|YP_005842702.1| - 2.9e-10 40.3 0.1 4.2e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|385806305|ref|YP_005842703.1| - 1e-13 51.2 5.3 1.3e-13 50.9 5.3 1.2 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|385806305|ref|YP_005842703.1| - 3.6e-05 23.7 8.4 0.00058 19.8 2.1 2.2 2 0 0 2 2 2 2 Prefoldin subunit OmpH PF03938.14 gi|385806305|ref|YP_005842703.1| - 0.023 15.0 6.0 0.11 12.8 2.0 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Cep57_MT_bd PF06657.13 gi|385806305|ref|YP_005842703.1| - 0.027 14.9 0.5 0.027 14.9 0.5 1.8 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4201 PF13870.6 gi|385806305|ref|YP_005842703.1| - 0.031 14.0 8.7 0.44 10.3 2.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) MapZ_EC1 PF18041.1 gi|385806305|ref|YP_005842703.1| - 0.036 14.3 8.6 0.065 13.5 0.6 2.1 1 1 1 2 2 2 0 MapZ extracellular domain 1 Enkurin PF13864.6 gi|385806305|ref|YP_005842703.1| - 0.039 14.4 5.7 2.7 8.5 2.2 2.5 2 1 0 2 2 2 0 Calmodulin-binding NgoMIV_restric PF09015.10 gi|385806305|ref|YP_005842703.1| - 0.062 12.4 0.3 0.071 12.2 0.3 1.1 1 0 0 1 1 1 0 NgoMIV restriction enzyme Spc24 PF08286.11 gi|385806305|ref|YP_005842703.1| - 0.088 13.1 6.5 2.5 8.4 0.3 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 HHH_6 PF14579.6 gi|385806305|ref|YP_005842703.1| - 0.1 12.8 0.1 0.26 11.6 0.1 1.7 1 1 1 2 2 2 0 Helix-hairpin-helix motif DUF848 PF05852.11 gi|385806305|ref|YP_005842703.1| - 0.66 10.1 4.2 11 6.1 0.5 2.1 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) APG6_N PF17675.1 gi|385806305|ref|YP_005842703.1| - 1.5 9.4 10.0 4 8.0 0.6 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region YabA PF06156.13 gi|385806305|ref|YP_005842703.1| - 1.5 9.5 5.4 7.2 7.3 0.4 2.1 2 0 0 2 2 2 0 Initiation control protein YabA CENP-Q PF13094.6 gi|385806305|ref|YP_005842703.1| - 2.2 8.4 9.2 0.23 11.7 0.7 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit bZIP_1 PF00170.21 gi|385806305|ref|YP_005842703.1| - 2.8 8.1 9.9 2.9 8.0 2.8 2.4 2 1 0 2 2 2 0 bZIP transcription factor SRP54 PF00448.22 gi|385806306|ref|YP_005842704.1| - 7.8e-69 231.2 0.0 1.1e-68 230.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|385806306|ref|YP_005842704.1| - 2.9e-09 37.0 1.9 2.9e-09 37.0 1.9 2.5 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain MMR_HSR1 PF01926.23 gi|385806306|ref|YP_005842704.1| - 0.00015 21.9 0.6 0.00067 19.7 0.1 2.2 1 1 1 2 2 2 1 50S ribosome-binding GTPase AAA PF00004.29 gi|385806306|ref|YP_005842704.1| - 0.0003 21.2 0.3 0.0013 19.1 0.1 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|385806306|ref|YP_005842704.1| - 0.00046 19.9 0.0 0.13 12.0 0.0 2.6 2 0 0 2 2 2 1 Thymidylate kinase AAA_30 PF13604.6 gi|385806306|ref|YP_005842704.1| - 0.0012 18.7 0.0 0.0017 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|385806306|ref|YP_005842704.1| - 0.0012 18.6 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|385806306|ref|YP_005842704.1| - 0.0017 18.4 0.1 0.015 15.4 0.0 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.6 gi|385806306|ref|YP_005842704.1| - 0.0036 17.6 0.1 0.012 15.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|385806306|ref|YP_005842704.1| - 0.0054 16.0 0.0 0.0085 15.4 0.0 1.5 1 1 0 1 1 1 1 Zeta toxin CelTOS PF18659.1 gi|385806306|ref|YP_005842704.1| - 0.007 16.8 4.3 0.018 15.5 4.3 1.7 1 0 0 1 1 1 1 Cell-traversal protein for ookinetes and sporozoites AAA_16 PF13191.6 gi|385806306|ref|YP_005842704.1| - 0.01 16.3 0.0 0.02 15.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_31 PF13614.6 gi|385806306|ref|YP_005842704.1| - 0.027 14.4 1.3 0.036 14.0 0.2 1.9 2 1 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|385806306|ref|YP_005842704.1| - 0.037 13.8 0.1 0.23 11.2 0.0 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|385806306|ref|YP_005842704.1| - 0.039 13.7 0.3 0.11 12.2 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ArsA_ATPase PF02374.15 gi|385806306|ref|YP_005842704.1| - 0.04 13.1 0.1 0.092 11.9 0.1 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_33 PF13671.6 gi|385806306|ref|YP_005842704.1| - 0.059 13.5 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385806306|ref|YP_005842704.1| - 0.067 13.1 0.0 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase 6PF2K PF01591.18 gi|385806306|ref|YP_005842704.1| - 0.075 12.3 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase ResIII PF04851.15 gi|385806306|ref|YP_005842704.1| - 0.081 12.9 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit APS_kinase PF01583.20 gi|385806306|ref|YP_005842704.1| - 0.082 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|385806306|ref|YP_005842704.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|385806306|ref|YP_005842704.1| - 0.11 12.5 0.7 0.37 10.8 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|385806306|ref|YP_005842704.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PPK2 PF03976.14 gi|385806306|ref|YP_005842704.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_17 PF13207.6 gi|385806306|ref|YP_005842704.1| - 0.12 12.7 0.3 0.43 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|385806306|ref|YP_005842704.1| - 0.14 12.1 0.2 0.14 12.1 0.2 2.6 2 1 1 3 3 3 0 NTPase NB-ARC PF00931.22 gi|385806306|ref|YP_005842704.1| - 0.19 10.9 0.7 0.31 10.2 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain Torsin PF06309.11 gi|385806306|ref|YP_005842704.1| - 0.2 11.8 0.1 0.76 9.9 0.1 1.9 1 1 0 1 1 1 0 Torsin Rpr2 PF04032.16 gi|385806307|ref|YP_005842705.1| - 3.1e-13 49.8 0.0 5.6e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain CRS1_YhbY PF01985.21 gi|385806307|ref|YP_005842705.1| - 1.6e-10 41.0 2.6 3.1e-10 40.1 2.6 1.5 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S27e PF01667.17 gi|385806307|ref|YP_005842705.1| - 0.037 13.8 0.6 0.27 11.0 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|385806307|ref|YP_005842705.1| - 0.084 13.3 0.1 13 6.3 0.0 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.7 gi|385806307|ref|YP_005842705.1| - 0.14 12.2 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|385806307|ref|YP_005842705.1| - 0.16 11.5 0.4 4.5 6.9 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_13 PF09855.9 gi|385806307|ref|YP_005842705.1| - 0.17 12.1 1.3 0.47 10.7 0.1 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DNA_RNApol_7kD PF03604.13 gi|385806307|ref|YP_005842705.1| - 0.35 10.6 5.4 1.8 8.3 0.8 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|385806307|ref|YP_005842705.1| - 3.7 7.8 5.6 77 3.6 5.6 2.2 1 1 0 1 1 1 0 Ribosomal protein L37e Asparaginase_2 PF01112.18 gi|385806308|ref|YP_005842706.1| - 5.4e-73 245.7 8.0 1.3e-72 244.4 8.0 1.5 1 1 0 1 1 1 1 Asparaginase EMG1 PF03587.14 gi|385806309|ref|YP_005842707.1| - 3.3e-44 150.9 0.5 3.9e-44 150.6 0.5 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Archease PF01951.16 gi|385806310|ref|YP_005842708.1| - 2.5e-40 137.9 0.3 2.8e-40 137.8 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF4494 PF14902.6 gi|385806310|ref|YP_005842708.1| - 0.029 14.2 0.2 5.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4494) PcfK PF14058.6 gi|385806310|ref|YP_005842708.1| - 0.074 13.3 0.3 0.098 12.9 0.3 1.2 1 0 0 1 1 1 0 PcfK-like protein tRNA_NucTran2_2 PF13735.6 gi|385806310|ref|YP_005842708.1| - 0.078 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative CDP-OH_P_transf PF01066.21 gi|385806311|ref|YP_005842709.1| - 0.97 10.3 3.8 2.1 9.2 3.8 1.6 1 1 0 1 1 1 0 CDP-alcohol phosphatidyltransferase Orf78 PF06024.12 gi|385806311|ref|YP_005842709.1| - 1.3 9.4 14.8 0.075 13.3 3.8 2.1 1 1 1 2 2 2 0 Orf78 (ac78) CBP_BcsF PF11120.8 gi|385806311|ref|YP_005842709.1| - 1.5 9.0 7.3 3.9 7.6 0.4 2.3 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF DUF2207 PF09972.9 gi|385806311|ref|YP_005842709.1| - 2.2 6.9 5.9 2.8 6.6 5.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Rax2 PF12768.7 gi|385806311|ref|YP_005842709.1| - 4.1 6.8 6.3 8.7 5.7 0.8 2.2 2 0 0 2 2 2 0 Cortical protein marker for cell polarity SecE PF00584.20 gi|385806312|ref|YP_005842710.1| - 0.005 16.7 0.2 0.0071 16.3 0.2 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex RPEL PF02755.15 gi|385806312|ref|YP_005842710.1| - 0.064 13.0 0.3 0.13 12.0 0.3 1.5 1 0 0 1 1 1 0 RPEL repeat Spt5-NGN PF03439.13 gi|385806313|ref|YP_005842711.1| - 1e-16 60.6 0.0 1.9e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|385806313|ref|YP_005842711.1| - 1.5e-06 28.0 0.4 3e-06 27.0 0.4 1.5 1 0 0 1 1 1 1 KOW motif CdiI_3 PF18616.1 gi|385806313|ref|YP_005842711.1| - 0.055 13.4 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 CDI immunity proteins YajC PF02699.15 gi|385806313|ref|YP_005842711.1| - 0.071 13.0 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit DUF1318 PF07027.12 gi|385806313|ref|YP_005842711.1| - 0.15 12.5 0.0 0.32 11.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1318) Ribosomal_L11 PF00298.19 gi|385806314|ref|YP_005842712.1| - 3.2e-14 53.2 0.2 3.2e-14 53.2 0.2 2.0 3 0 0 3 3 3 1 Ribosomal protein L11, RNA binding domain Poly_export PF02563.16 gi|385806314|ref|YP_005842712.1| - 0.018 15.3 0.5 5.2 7.4 0.1 3.0 3 0 0 3 3 3 0 Polysaccharide biosynthesis/export protein CW_7 PF08230.11 gi|385806314|ref|YP_005842712.1| - 0.061 13.1 0.0 1.8 8.4 0.0 2.3 2 0 0 2 2 2 0 CW_7 repeat Phage_P2_GpE PF06528.12 gi|385806314|ref|YP_005842712.1| - 0.16 11.5 0.1 0.63 9.6 0.0 2.0 2 0 0 2 2 2 0 Phage P2 GpE Ribosomal_L1 PF00687.21 gi|385806315|ref|YP_005842713.1| - 4.2e-34 118.1 6.3 5.1e-34 117.8 6.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family SpmSyn_N PF17950.1 gi|385806315|ref|YP_005842713.1| - 0.044 14.0 0.8 0.6 10.3 0.1 2.4 2 0 0 2 2 2 0 S-adenosylmethionine decarboxylase N -terminal RL10P_insert PF17777.1 gi|385806316|ref|YP_005842714.1| - 6e-18 64.6 0.1 1.2e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|385806316|ref|YP_005842714.1| - 8.5e-14 51.5 2.3 8.5e-14 51.5 2.3 1.9 2 0 0 2 2 2 1 Ribosomal protein L10 U1snRNP70_N PF12220.8 gi|385806316|ref|YP_005842714.1| - 0.058 14.0 3.3 0.12 13.0 3.3 1.5 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal DUF4724 PF15852.5 gi|385806316|ref|YP_005842714.1| - 0.34 11.4 1.7 0.41 11.2 0.4 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4724) Ribosomal_60s PF00428.19 gi|385806317|ref|YP_005842715.1| - 5.4e-20 71.8 12.5 6.1e-20 71.6 12.5 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|385806317|ref|YP_005842715.1| - 0.00035 20.5 3.3 0.29 11.1 0.8 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain EF-hand_14 PF17959.1 gi|385806317|ref|YP_005842715.1| - 0.001 19.3 2.0 0.0016 18.8 0.0 1.9 2 0 0 2 2 2 1 EF-hand domain TFIID_30kDa PF03540.13 gi|385806317|ref|YP_005842715.1| - 0.0034 17.3 0.1 0.0049 16.8 0.1 1.2 1 0 0 1 1 1 1 Transcription initiation factor TFIID 23-30kDa subunit DUF3824 PF12868.7 gi|385806317|ref|YP_005842715.1| - 0.025 15.2 1.3 0.034 14.8 1.3 1.1 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) CPSF100_C PF13299.6 gi|385806317|ref|YP_005842715.1| - 0.058 13.6 2.8 0.086 13.0 2.5 1.4 1 1 1 2 2 2 0 Cleavage and polyadenylation factor 2 C-terminal tRNA-synt_2c PF01411.19 gi|385806318|ref|YP_005842716.1| - 4.7e-95 319.2 0.0 3.8e-94 316.2 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|385806318|ref|YP_005842716.1| - 6.9e-11 42.1 0.8 1.8e-10 40.8 0.8 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|385806318|ref|YP_005842716.1| - 2.5e-09 37.7 0.7 2.5e-09 37.7 0.7 2.2 2 0 0 2 2 2 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|385806318|ref|YP_005842716.1| - 0.0032 16.8 0.0 0.01 15.1 0.0 1.9 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Med30 PF11315.8 gi|385806318|ref|YP_005842716.1| - 0.038 14.2 1.6 0.14 12.3 1.6 2.0 1 0 0 1 1 1 0 Mediator complex subunit 30 Sec20 PF03908.13 gi|385806318|ref|YP_005842716.1| - 0.11 12.4 0.2 0.32 10.9 0.2 1.8 1 0 0 1 1 1 0 Sec20 VASP_tetra PF08776.11 gi|385806318|ref|YP_005842716.1| - 0.46 10.1 0.0 0.46 10.1 0.0 3.8 4 0 0 4 4 4 0 VASP tetramerisation domain DUF5616 PF18481.1 gi|385806319|ref|YP_005842717.1| - 1.8e-27 96.4 0.1 2.7e-27 95.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|385806319|ref|YP_005842717.1| - 7.1e-16 57.6 0.3 1.2e-15 56.9 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) DUF2621 PF11084.8 gi|385806319|ref|YP_005842717.1| - 0.019 14.9 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) ABC_tran PF00005.27 gi|385806320|ref|YP_005842718.1| - 2.4e-29 102.6 0.0 3.7e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385806320|ref|YP_005842718.1| - 2.6e-16 60.3 2.0 1.4e-09 38.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385806320|ref|YP_005842718.1| - 8.8e-09 35.1 0.3 3.9e-08 33.0 0.3 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|385806320|ref|YP_005842718.1| - 0.00018 22.1 2.0 0.0003 21.3 1.6 1.7 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|385806320|ref|YP_005842718.1| - 0.003 17.8 0.1 0.13 12.5 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|385806320|ref|YP_005842718.1| - 0.0032 17.2 2.9 0.021 14.6 0.3 2.4 1 1 1 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 gi|385806320|ref|YP_005842718.1| - 0.0068 15.5 0.1 0.013 14.5 0.0 1.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|385806320|ref|YP_005842718.1| - 0.0077 15.9 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|385806320|ref|YP_005842718.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|385806320|ref|YP_005842718.1| - 0.019 15.1 0.1 0.14 12.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|385806320|ref|YP_005842718.1| - 0.035 14.4 0.0 0.07 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|385806320|ref|YP_005842718.1| - 0.039 13.9 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase NB-ARC PF00931.22 gi|385806320|ref|YP_005842718.1| - 0.05 12.8 0.1 0.37 9.9 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain cobW PF02492.19 gi|385806320|ref|YP_005842718.1| - 0.052 13.1 0.2 0.093 12.3 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|385806320|ref|YP_005842718.1| - 0.061 13.4 0.2 0.69 9.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|385806320|ref|YP_005842718.1| - 0.079 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|385806320|ref|YP_005842718.1| - 0.13 9.8 0.1 0.17 9.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|385806320|ref|YP_005842718.1| - 0.15 12.4 0.0 0.21 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|385806320|ref|YP_005842718.1| - 0.16 12.4 0.3 0.69 10.3 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|385806320|ref|YP_005842718.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|385806320|ref|YP_005842718.1| - 0.21 10.9 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ZnuA PF01297.17 gi|385806321|ref|YP_005842719.1| - 8.3e-24 84.4 0.0 1.1e-23 83.9 0.0 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic FtsX PF02687.21 gi|385806321|ref|YP_005842719.1| - 0.012 16.0 2.3 0.099 13.1 0.6 2.4 2 0 0 2 2 2 0 FtsX-like permease family Yip1 PF04893.17 gi|385806321|ref|YP_005842719.1| - 0.023 14.4 4.8 0.98 9.1 0.4 2.3 2 0 0 2 2 2 0 Yip1 domain RIFIN PF02009.16 gi|385806321|ref|YP_005842719.1| - 0.17 11.8 3.4 0.1 12.5 1.3 1.6 2 0 0 2 2 2 0 Rifin MpPF26 PF07666.11 gi|385806321|ref|YP_005842719.1| - 0.19 11.8 7.1 0.083 13.0 0.8 2.5 2 0 0 2 2 2 0 M penetrans paralogue family 26 Stevor PF17410.2 gi|385806321|ref|YP_005842719.1| - 0.19 11.2 3.2 0.11 12.0 0.4 1.9 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame DUF4064 PF13273.6 gi|385806321|ref|YP_005842719.1| - 0.28 11.5 5.1 0.44 10.9 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) Saf_2TM PF18303.1 gi|385806321|ref|YP_005842719.1| - 0.64 9.6 4.6 2.4 7.7 0.6 2.3 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain DUF3671 PF12420.8 gi|385806321|ref|YP_005842719.1| - 1.6 8.8 7.5 0.59 10.2 2.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF5367 PF17329.2 gi|385806321|ref|YP_005842719.1| - 2.6 8.2 7.4 1.1 9.4 0.3 2.8 3 0 0 3 3 3 0 Family of unknown function (DUF5367) ABC-3 PF00950.17 gi|385806322|ref|YP_005842720.1| - 8e-22 78.0 26.3 9.8e-22 77.7 26.3 1.1 1 0 0 1 1 1 1 ABC 3 transport family RHH_1 PF01402.21 gi|385806323|ref|YP_005842721.1| - 6.1e-08 32.3 0.1 3.9e-06 26.6 0.4 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|385806323|ref|YP_005842721.1| - 6.2e-08 32.5 0.0 1e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain NikR_C PF08753.11 gi|385806323|ref|YP_005842721.1| - 2.6e-06 27.5 0.3 7e-06 26.1 0.0 1.8 1 1 0 2 2 2 1 NikR C terminal nickel binding domain DUF126 PF01989.16 gi|385806323|ref|YP_005842721.1| - 0.052 13.3 0.0 0.082 12.7 0.0 1.2 1 0 0 1 1 1 0 Aconitase X swivel domain APAF1_C PF17908.1 gi|385806323|ref|YP_005842721.1| - 0.12 12.3 0.0 9.5 6.2 0.0 2.0 1 1 1 2 2 2 0 APAF-1 helical domain Proton_antipo_M PF00361.20 gi|385806325|ref|YP_005842723.1| - 6.9e-55 186.3 26.9 6.9e-55 186.3 26.9 2.4 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385806325|ref|YP_005842723.1| - 0.0021 18.1 0.3 0.016 15.2 0.3 2.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q6 PF01058.22 gi|385806326|ref|YP_005842724.1| - 6.3e-28 97.2 0.6 1e-27 96.6 0.6 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|385806327|ref|YP_005842725.1| - 2.5e-15 55.6 12.9 8.6e-09 34.9 3.4 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385806327|ref|YP_005842725.1| - 2.4e-13 50.5 7.6 2.4e-13 50.5 7.6 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385806327|ref|YP_005842725.1| - 4.4e-13 49.2 33.5 1.1e-09 38.3 7.4 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385806327|ref|YP_005842725.1| - 4e-12 46.0 20.6 5.1e-09 36.1 8.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385806327|ref|YP_005842725.1| - 6.2e-11 42.3 11.2 3.3e-10 39.9 5.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385806327|ref|YP_005842725.1| - 6.6e-09 36.6 14.8 0.00039 21.3 7.6 3.1 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|385806327|ref|YP_005842725.1| - 2e-08 34.6 12.3 0.0054 17.3 0.3 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385806327|ref|YP_005842725.1| - 3.8e-07 29.8 17.5 3.2e-05 23.8 1.7 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385806327|ref|YP_005842725.1| - 1.5e-06 28.0 23.7 0.00025 21.0 2.4 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385806327|ref|YP_005842725.1| - 5.8e-06 26.7 16.4 0.00086 19.7 9.4 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385806327|ref|YP_005842725.1| - 3.7e-05 24.4 17.4 0.00065 20.5 4.6 3.1 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385806327|ref|YP_005842725.1| - 0.0015 18.9 10.5 0.0066 16.9 1.3 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|385806327|ref|YP_005842725.1| - 0.049 14.5 18.3 0.17 12.7 1.8 3.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain UVR PF02151.19 gi|385806327|ref|YP_005842725.1| - 0.11 12.2 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 UvrB/uvrC motif Fer4_18 PF13746.6 gi|385806327|ref|YP_005842725.1| - 0.12 12.6 0.7 0.12 12.6 0.7 3.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain HNH PF01844.23 gi|385806327|ref|YP_005842725.1| - 0.13 12.4 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 1 0 HNH endonuclease Fer4_13 PF13370.6 gi|385806327|ref|YP_005842725.1| - 0.38 11.3 13.3 0.3 11.7 0.8 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|385806327|ref|YP_005842725.1| - 1.6 8.9 5.2 1.6 8.9 0.0 2.6 2 1 1 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S zf-CSL PF05207.13 gi|385806327|ref|YP_005842725.1| - 6.1 6.7 12.9 1.4 8.7 0.2 3.0 2 1 1 3 3 3 0 CSL zinc finger Fer4_15 PF13459.6 gi|385806327|ref|YP_005842725.1| - 6.8 7.5 16.8 0.85 10.4 1.5 3.4 2 2 1 3 3 3 0 4Fe-4S single cluster domain E6 PF00518.17 gi|385806327|ref|YP_005842725.1| - 7.3 7.1 11.5 8.7 6.8 7.3 2.3 1 1 1 2 2 2 0 Early Protein (E6) zf-RRPl_C4 PF17026.5 gi|385806327|ref|YP_005842725.1| - 8.6 6.5 10.7 1.2 9.2 2.1 2.5 1 1 1 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type Complex1_49kDa PF00346.19 gi|385806328|ref|YP_005842726.1| - 2.1e-61 207.4 0.1 1.2e-45 155.8 0.1 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|385806328|ref|YP_005842726.1| - 2e-23 83.3 0.0 4.6e-23 82.2 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|385806328|ref|YP_005842726.1| - 6.3e-18 64.9 1.7 3.3e-14 52.7 0.0 2.9 2 1 0 2 2 2 2 Nickel-dependent hydrogenase Proton_antipo_M PF00361.20 gi|385806329|ref|YP_005842727.1| - 1.5e-55 188.5 30.4 1.5e-55 188.5 30.4 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385806329|ref|YP_005842727.1| - 6.6e-05 22.9 0.7 6.6e-05 22.9 0.7 4.3 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|385806330|ref|YP_005842728.1| - 1.9e-05 24.3 1.9 1.9e-05 24.3 1.9 3.1 3 1 0 3 3 3 2 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PGG PF13962.6 gi|385806330|ref|YP_005842728.1| - 1.4 8.8 6.4 1.6 8.5 2.0 2.4 1 1 1 2 2 2 0 Domain of unknown function NADHdh PF00146.21 gi|385806331|ref|YP_005842729.1| - 4.6e-50 170.6 19.0 5.8e-50 170.3 19.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Pathogen_betaC1 PF09593.10 gi|385806331|ref|YP_005842729.1| - 0.012 15.6 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Beta-satellite pathogenicity beta C1 protein TadE PF07811.12 gi|385806331|ref|YP_005842729.1| - 0.11 12.8 2.4 0.19 12.0 0.0 2.7 2 0 0 2 2 2 0 TadE-like protein Proton_antipo_M PF00361.20 gi|385806332|ref|YP_005842730.1| - 6.5e-51 173.3 33.9 2.9e-50 171.2 33.9 2.2 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385806332|ref|YP_005842730.1| - 0.0097 16.0 3.1 0.0097 16.0 3.1 4.5 5 1 1 6 6 6 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Fer4_11 PF13247.6 gi|385806333|ref|YP_005842731.1| - 5.5e-22 77.8 11.3 5.5e-22 77.8 11.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|385806333|ref|YP_005842731.1| - 8.1e-13 48.8 53.1 1.2e-06 29.0 11.8 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385806333|ref|YP_005842731.1| - 8.5e-13 47.5 41.7 2.3e-06 27.1 2.9 5.5 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385806333|ref|YP_005842731.1| - 1.5e-12 47.0 39.5 2.2e-05 24.3 2.3 4.8 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|385806333|ref|YP_005842731.1| - 1e-11 44.7 51.2 1.6e-06 28.1 11.6 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385806333|ref|YP_005842731.1| - 2e-11 43.9 51.0 2.8e-06 27.4 11.0 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385806333|ref|YP_005842731.1| - 1.8e-10 40.2 32.1 6.6e-05 22.8 1.5 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385806333|ref|YP_005842731.1| - 5.3e-09 35.9 34.7 0.00081 19.7 2.1 4.8 3 2 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|385806333|ref|YP_005842731.1| - 8.1e-07 29.1 34.6 0.00042 20.4 13.1 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385806333|ref|YP_005842731.1| - 1.7e-06 28.6 40.2 0.074 14.0 4.9 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|385806333|ref|YP_005842731.1| - 3.7e-06 27.8 33.5 0.043 14.8 0.7 4.8 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|385806333|ref|YP_005842731.1| - 0.0055 17.1 33.1 0.054 13.9 2.3 4.4 1 1 4 5 5 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|385806333|ref|YP_005842731.1| - 0.0071 16.9 28.5 0.017 15.7 1.5 4.4 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|385806333|ref|YP_005842731.1| - 0.86 10.5 23.7 0.24 12.3 2.6 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385806333|ref|YP_005842731.1| - 1.6 9.5 25.2 11 6.9 9.7 3.9 2 2 0 2 2 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.22 gi|385806334|ref|YP_005842732.1| - 2e-78 264.3 0.0 2.5e-78 264.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|385806334|ref|YP_005842732.1| - 1.1e-12 48.0 0.0 1.8e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|385806334|ref|YP_005842732.1| - 0.00015 21.7 0.0 0.00031 20.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain PEX-2N PF09263.10 gi|385806334|ref|YP_005842732.1| - 0.046 14.0 0.0 2.8 8.3 0.0 2.6 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Elong-fact-P_C PF09285.11 gi|385806334|ref|YP_005842732.1| - 0.12 12.2 0.0 0.34 10.7 0.0 1.8 1 0 0 1 1 1 0 Elongation factor P, C-terminal HycI PF01750.18 gi|385806335|ref|YP_005842733.1| - 8.4e-12 45.0 0.1 1.4e-11 44.3 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase maturation protease FBP_C PF16571.5 gi|385806335|ref|YP_005842733.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 FBP C-terminal treble-clef zinc-finger DUF1256 PF06866.11 gi|385806335|ref|YP_005842733.1| - 0.085 12.3 0.1 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1256) Peptidase_A25 PF03418.14 gi|385806335|ref|YP_005842733.1| - 0.12 11.2 0.1 0.24 10.3 0.1 1.4 1 1 0 1 1 1 0 Germination protease Spaetzle PF16077.5 gi|385806336|ref|YP_005842734.1| - 0.021 15.3 0.0 0.021 15.3 0.0 1.2 1 0 0 1 1 1 0 Spaetzle TrmB PF01978.19 gi|385806339|ref|YP_005842737.1| - 2.7e-19 68.8 0.1 6.4e-19 67.6 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|385806339|ref|YP_005842737.1| - 9.4e-07 28.3 0.0 2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|385806339|ref|YP_005842737.1| - 0.00012 21.8 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|385806339|ref|YP_005842737.1| - 0.00013 21.8 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|385806339|ref|YP_005842737.1| - 0.00022 21.7 0.0 0.00045 20.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|385806339|ref|YP_005842737.1| - 0.0015 18.5 0.0 0.0035 17.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|385806339|ref|YP_005842737.1| - 0.0029 17.5 0.0 0.0053 16.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_40 PF14493.6 gi|385806339|ref|YP_005842737.1| - 0.034 14.6 0.0 0.095 13.2 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|385806339|ref|YP_005842737.1| - 0.085 12.8 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 MarR family RHH_1 PF01402.21 gi|385806340|ref|YP_005842738.1| - 1.9e-06 27.6 0.0 2.5e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|385806340|ref|YP_005842738.1| - 0.0071 16.2 0.2 0.0089 15.9 0.2 1.3 1 1 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB Fur_reg_FbpA PF13076.6 gi|385806340|ref|YP_005842738.1| - 0.071 12.8 0.5 0.15 11.8 0.3 1.6 2 0 0 2 2 2 0 Fur-regulated basic protein A Ribosomal_L40e PF01020.17 gi|385806341|ref|YP_005842739.1| - 5.7e-12 45.3 4.7 7.3e-12 45.0 4.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|385806341|ref|YP_005842739.1| - 1e-05 25.1 5.0 1.5e-05 24.6 5.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|385806341|ref|YP_005842739.1| - 0.00021 20.5 3.7 0.00027 20.2 3.7 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|385806341|ref|YP_005842739.1| - 0.00022 21.2 0.7 0.00025 21.0 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|385806341|ref|YP_005842739.1| - 0.00027 20.7 0.8 0.00036 20.3 0.8 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|385806341|ref|YP_005842739.1| - 0.0027 17.7 0.3 0.0028 17.7 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|385806341|ref|YP_005842739.1| - 0.0049 16.2 3.9 0.0076 15.6 3.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|385806341|ref|YP_005842739.1| - 0.015 16.1 0.2 0.016 15.9 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbon family CpXC PF14353.6 gi|385806341|ref|YP_005842739.1| - 0.034 14.2 0.8 0.2 11.7 0.8 1.9 1 1 0 1 1 1 0 CpXC protein zf-ISL3 PF14690.6 gi|385806341|ref|YP_005842739.1| - 0.039 14.6 3.2 0.62 10.8 0.8 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 hSH3 PF14603.6 gi|385806341|ref|YP_005842739.1| - 0.051 14.0 0.8 0.17 12.4 0.1 1.8 1 1 1 2 2 2 0 Helically-extended SH3 domain RNA_POL_M_15KD PF02150.16 gi|385806341|ref|YP_005842739.1| - 0.071 13.0 3.1 1.4 8.9 0.0 2.4 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|385806341|ref|YP_005842739.1| - 0.13 12.4 3.1 0.96 9.6 3.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain DUF2688 PF10892.8 gi|385806341|ref|YP_005842739.1| - 0.13 11.7 0.8 0.13 11.7 0.8 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2688) zf-CCHC PF00098.23 gi|385806341|ref|YP_005842739.1| - 0.21 11.7 5.5 2.8 8.2 0.2 2.2 2 0 0 2 2 2 0 Zinc knuckle TF_Zn_Ribbon PF08271.12 gi|385806341|ref|YP_005842739.1| - 0.28 10.7 3.9 5.5 6.6 0.3 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|385806341|ref|YP_005842739.1| - 0.34 11.1 6.3 0.25 11.5 0.7 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e zf-RRN7 PF11781.8 gi|385806341|ref|YP_005842739.1| - 0.39 10.4 3.4 7.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|385806341|ref|YP_005842739.1| - 0.4 10.7 5.0 3.2 7.8 4.8 2.1 1 1 1 2 2 2 0 Adenylate kinase, active site lid DNA_RNApol_7kD PF03604.13 gi|385806341|ref|YP_005842739.1| - 0.63 9.8 7.9 2.6 7.8 0.9 2.3 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|385806341|ref|YP_005842739.1| - 0.84 9.4 5.1 2.5 7.9 5.2 1.7 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-CCHC_2 PF13696.6 gi|385806341|ref|YP_005842739.1| - 6.1 6.8 8.2 4.6 7.1 1.3 2.3 2 0 0 2 2 2 0 Zinc knuckle CN_hydrolase PF00795.22 gi|385806342|ref|YP_005842740.1| - 2.7e-16 59.7 0.0 3.4e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Topoisom_bac PF01131.20 gi|385806343|ref|YP_005842741.1| - 1.5e-85 287.7 1.2 1.5e-85 287.7 1.2 1.7 2 0 0 2 2 2 1 DNA topoisomerase Toprim PF01751.22 gi|385806343|ref|YP_005842741.1| - 4e-25 88.0 0.0 4e-25 88.0 0.0 3.1 4 0 0 4 4 2 1 Toprim domain DEAD PF00270.29 gi|385806343|ref|YP_005842741.1| - 1.5e-13 50.9 0.0 7.6e-13 48.6 0.0 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|385806343|ref|YP_005842741.1| - 4.1e-13 48.5 1.2 4.1e-13 48.5 1.2 2.5 2 1 1 3 3 2 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|385806343|ref|YP_005842741.1| - 2.2e-09 37.7 0.2 0.071 13.5 0.0 5.0 4 0 0 4 4 4 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|385806343|ref|YP_005842741.1| - 5.7e-06 26.4 0.1 3.5e-05 23.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NRDD PF13597.6 gi|385806343|ref|YP_005842741.1| - 0.0034 16.2 0.1 0.0096 14.8 0.1 1.7 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|385806343|ref|YP_005842741.1| - 0.05 13.6 4.6 0.28 11.2 0.6 2.4 2 0 0 2 2 2 0 Double zinc ribbon Toprim_4 PF13662.6 gi|385806343|ref|YP_005842741.1| - 0.066 13.7 0.2 0.48 10.9 0.0 2.6 3 0 0 3 3 1 0 Toprim domain DUF5433 PF17498.2 gi|385806343|ref|YP_005842741.1| - 0.085 13.1 0.0 0.28 11.4 0.0 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5433) Zn-ribbon_8 PF09723.10 gi|385806343|ref|YP_005842741.1| - 0.09 12.9 7.0 0.19 11.8 0.9 2.7 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|385806343|ref|YP_005842741.1| - 0.098 13.4 0.3 0.098 13.4 0.3 2.7 3 1 0 3 3 2 0 zinc-ribbon family TackOD1 PF18551.1 gi|385806343|ref|YP_005842741.1| - 0.14 11.8 2.8 0.45 10.1 0.1 2.7 3 0 0 3 3 2 0 Thaumarchaeal output domain 1 DUF35_N PF12172.8 gi|385806343|ref|YP_005842741.1| - 0.14 12.0 3.1 0.59 10.1 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|385806343|ref|YP_005842741.1| - 0.16 12.0 3.7 0.13 12.3 0.3 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|385806343|ref|YP_005842741.1| - 0.17 12.6 0.8 3.2 8.5 0.0 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|385806343|ref|YP_005842741.1| - 0.9 9.3 10.2 0.69 9.7 3.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|385806343|ref|YP_005842741.1| - 2 8.4 6.0 0.72 9.8 1.2 2.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 IBR PF01485.21 gi|385806343|ref|YP_005842741.1| - 2.1 8.6 4.6 12 6.2 0.7 2.6 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain zf-TFIIB PF13453.6 gi|385806343|ref|YP_005842741.1| - 2.1 7.8 7.2 13 5.2 0.8 3.0 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|385806343|ref|YP_005842741.1| - 2.9 7.8 7.0 37 4.3 0.2 3.8 3 1 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.11 gi|385806343|ref|YP_005842741.1| - 3.6 7.3 6.4 5.2 6.8 0.1 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385806343|ref|YP_005842741.1| - 3.9 7.5 7.6 22 5.1 1.4 2.8 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|385806343|ref|YP_005842741.1| - 3.9 7.0 11.2 5.5 6.6 0.5 3.0 2 1 1 3 3 3 0 zinc-ribbon domain RecR PF02132.15 gi|385806343|ref|YP_005842741.1| - 4.8 6.8 7.1 0.78 9.4 0.9 2.6 2 0 0 2 2 2 0 RecR protein Zn_Tnp_IS1595 PF12760.7 gi|385806343|ref|YP_005842741.1| - 9.4 6.3 5.9 34 4.5 0.6 2.7 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Lactamase_B PF00753.27 gi|385806344|ref|YP_005842742.1| - 1.1e-09 38.7 0.0 2.3e-09 37.5 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|385806344|ref|YP_005842742.1| - 0.0018 18.5 0.0 0.0037 17.5 0.0 1.6 1 1 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|385806344|ref|YP_005842742.1| - 0.0019 17.8 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SpoIIM PF01944.17 gi|385806345|ref|YP_005842743.1| - 1.4e-29 103.2 19.2 1.7e-29 102.9 19.2 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF4271 PF14093.6 gi|385806345|ref|YP_005842743.1| - 1.6 8.6 18.2 1.1 9.2 12.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4271) TM_helix PF05552.12 gi|385806346|ref|YP_005842744.1| - 7.5e-07 29.0 1.2 7.5e-07 29.0 1.2 3.1 5 0 0 5 5 5 1 Conserved TM helix MMgT PF10270.9 gi|385806346|ref|YP_005842744.1| - 0.29 11.5 2.7 8.8 6.7 0.5 2.6 1 1 1 2 2 2 0 Membrane magnesium transporter Lactamase_B_2 PF12706.7 gi|385806347|ref|YP_005842745.1| - 6.4e-23 81.3 0.0 8.6e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|385806347|ref|YP_005842745.1| - 5.6e-21 75.1 0.2 9.6e-21 74.4 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|385806347|ref|YP_005842745.1| - 5.5e-11 42.8 0.4 7.6e-11 42.4 0.4 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|385806347|ref|YP_005842745.1| - 0.078 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily Ribosomal_L7Ae PF01248.26 gi|385806347|ref|YP_005842745.1| - 0.13 12.0 0.1 6.9 6.5 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Transketolase_C PF02780.20 gi|385806347|ref|YP_005842745.1| - 0.22 11.4 1.6 1.8 8.4 0.0 2.6 2 2 1 3 3 3 0 Transketolase, C-terminal domain PhoU PF01895.19 gi|385806348|ref|YP_005842746.1| - 1.2e-14 54.5 9.2 5.3e-14 52.5 1.4 2.8 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|385806348|ref|YP_005842746.1| - 3.9e-07 29.9 0.0 1.1e-06 28.4 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Chalcone_2 PF16035.5 gi|385806348|ref|YP_005842746.1| - 0.014 15.2 0.0 0.033 14.0 0.0 1.6 1 0 0 1 1 1 0 Chalcone isomerase like Cas_Cas4 PF01930.17 gi|385806349|ref|YP_005842747.1| - 5.3e-06 26.6 0.4 9.8e-06 25.8 0.4 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|385806349|ref|YP_005842747.1| - 5.4e-06 26.7 0.2 9.6e-06 25.9 0.2 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_1 PF12705.7 gi|385806349|ref|YP_005842747.1| - 0.0043 17.0 2.7 0.23 11.3 1.2 2.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily GCD14 PF08704.10 gi|385806350|ref|YP_005842748.1| - 1.4e-19 70.8 0.0 1.8e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|385806350|ref|YP_005842748.1| - 8.3e-06 25.7 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.6 gi|385806350|ref|YP_005842748.1| - 8e-05 22.4 0.0 0.00017 21.4 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term PCMT PF01135.19 gi|385806350|ref|YP_005842748.1| - 0.00014 21.7 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|385806350|ref|YP_005842748.1| - 0.0072 17.0 0.0 0.011 16.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|385806350|ref|YP_005842748.1| - 0.055 12.6 0.1 0.11 11.6 0.1 1.4 1 1 0 1 1 1 0 Fibrillarin Methyltransf_12 PF08242.12 gi|385806350|ref|YP_005842748.1| - 0.068 13.9 0.0 0.22 12.3 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|385806350|ref|YP_005842748.1| - 0.13 12.9 0.0 0.25 12.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain V-ATPase_G_2 PF16999.5 gi|385806351|ref|YP_005842749.1| - 0.00013 22.4 10.6 0.001 19.5 9.5 1.9 1 1 1 2 2 2 1 Vacuolar (H+)-ATPase G subunit DUF4456 PF14644.6 gi|385806351|ref|YP_005842749.1| - 0.00064 19.5 5.0 0.0017 18.1 4.3 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4456) Mitofilin PF09731.9 gi|385806351|ref|YP_005842749.1| - 0.039 12.8 14.7 0.043 12.7 14.7 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF3160 PF11369.8 gi|385806351|ref|YP_005842749.1| - 0.06 11.8 4.7 0.068 11.6 4.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3160) DUF1722 PF08349.11 gi|385806351|ref|YP_005842749.1| - 0.074 13.3 3.4 0.094 13.0 2.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1722) DUF2797 PF10977.8 gi|385806351|ref|YP_005842749.1| - 0.081 12.8 2.0 0.099 12.5 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) ING PF12998.7 gi|385806351|ref|YP_005842749.1| - 0.083 13.5 8.5 0.15 12.6 8.5 1.4 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Syntaxin_2 PF14523.6 gi|385806351|ref|YP_005842749.1| - 0.094 13.1 6.1 0.11 12.9 5.6 1.4 1 1 0 1 1 1 0 Syntaxin-like protein GCP_C_terminal PF04130.13 gi|385806351|ref|YP_005842749.1| - 0.099 12.1 1.0 0.13 11.7 1.0 1.2 1 0 0 1 1 1 0 Gamma tubulin complex component C-terminal Exonuc_VII_L PF02601.15 gi|385806351|ref|YP_005842749.1| - 0.18 11.4 2.6 0.22 11.1 2.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit BPS1 PF05633.11 gi|385806351|ref|YP_005842749.1| - 0.18 10.8 8.6 0.2 10.6 8.6 1.0 1 0 0 1 1 1 0 Protein BYPASS1-related RE_HindIII PF09518.10 gi|385806351|ref|YP_005842749.1| - 0.25 10.5 7.6 0.39 9.9 7.5 1.3 1 1 0 1 1 1 0 HindIII restriction endonuclease M11L PF11099.8 gi|385806351|ref|YP_005842749.1| - 0.26 11.5 4.6 0.39 11.0 0.7 2.0 1 1 1 2 2 2 0 Apoptosis regulator M11L like ZapB PF06005.12 gi|385806351|ref|YP_005842749.1| - 0.42 11.1 15.5 0.97 9.9 7.7 2.3 2 1 0 2 2 2 0 Cell division protein ZapB DUF2115 PF09888.9 gi|385806351|ref|YP_005842749.1| - 0.43 11.1 5.9 2.1 8.8 5.8 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) Peptidase_S46 PF10459.9 gi|385806351|ref|YP_005842749.1| - 0.43 9.2 5.9 0.47 9.0 5.9 1.0 1 0 0 1 1 1 0 Peptidase S46 Folliculin PF11704.8 gi|385806351|ref|YP_005842749.1| - 0.45 10.4 3.4 0.5 10.2 3.0 1.3 1 1 0 1 1 1 0 Vesicle coat protein involved in Golgi to plasma membrane transport TCTP PF00838.17 gi|385806351|ref|YP_005842749.1| - 0.77 10.1 10.4 1.2 9.4 10.4 1.5 1 1 0 1 1 1 0 Translationally controlled tumour protein DUF2031 PF09592.10 gi|385806351|ref|YP_005842749.1| - 1.2 8.6 17.0 1.5 8.3 17.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) YlbE PF14003.6 gi|385806351|ref|YP_005842749.1| - 1.5 9.3 7.7 2.8 8.5 0.2 2.8 2 1 1 3 3 3 0 YlbE-like protein TMPIT PF07851.13 gi|385806351|ref|YP_005842749.1| - 2.7 7.2 7.6 3 7.0 7.6 1.0 1 0 0 1 1 1 0 TMPIT-like protein DCB PF16213.5 gi|385806351|ref|YP_005842749.1| - 4.5 6.9 8.9 0.85 9.3 2.2 2.0 1 1 1 2 2 2 0 Dimerisation and cyclophilin-binding domain of Mon2 CemA PF03040.14 gi|385806351|ref|YP_005842749.1| - 4.9 7.0 7.7 5.7 6.8 7.7 1.2 1 0 0 1 1 1 0 CemA family Arc_PepC_II PF06847.11 gi|385806351|ref|YP_005842749.1| - 9.3 6.8 6.2 68 4.1 6.2 2.1 1 1 0 1 1 1 0 Archaeal Peptidase A24 C-terminus Type II vATP-synt_AC39 PF01992.16 gi|385806352|ref|YP_005842750.1| - 1e-08 35.1 10.0 1.2e-08 34.8 10.0 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3024 PF11225.8 gi|385806352|ref|YP_005842750.1| - 0.025 14.8 0.1 0.071 13.4 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3024) Sigma70_r1_1 PF03979.14 gi|385806352|ref|YP_005842750.1| - 0.064 13.3 0.8 0.21 11.7 0.8 1.9 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 BPL_LplA_LipB PF03099.19 gi|385806353|ref|YP_005842751.1| - 2.6e-05 24.1 0.3 6.3e-05 22.9 0.0 1.8 2 1 0 2 2 2 1 Biotin/lipoate A/B protein ligase family Porin_OmpG_1_2 PF16946.5 gi|385806353|ref|YP_005842751.1| - 0.03 13.6 0.1 0.055 12.8 0.1 1.4 1 0 0 1 1 1 0 OMPG-porin 1 family Lip_prot_lig_C PF10437.9 gi|385806354|ref|YP_005842752.1| - 3.8e-10 39.6 0.3 4.2e-10 39.5 0.3 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus MNHE PF01899.16 gi|385806356|ref|YP_005842754.1| - 0.84 9.4 6.1 1 9.1 5.6 1.4 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit Phage_holin_2_1 PF04971.12 gi|385806356|ref|YP_005842754.1| - 0.94 9.5 5.0 5 7.2 0.2 2.4 2 0 0 2 2 2 0 Bacteriophage P21 holin S FUSC PF04632.12 gi|385806356|ref|YP_005842754.1| - 5.6 5.4 5.2 7 5.1 5.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family ArsA_ATPase PF02374.15 gi|385806358|ref|YP_005842756.1| - 2.4e-29 102.5 0.0 2.7e-29 102.3 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|385806358|ref|YP_005842756.1| - 1.6e-07 31.4 0.0 5.4e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|385806358|ref|YP_005842756.1| - 5.5e-06 26.4 1.2 1.5e-05 25.0 0.0 2.2 2 2 0 2 2 2 1 AAA domain ParA PF10609.9 gi|385806358|ref|YP_005842756.1| - 3e-05 23.6 0.0 0.00066 19.2 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|385806358|ref|YP_005842756.1| - 0.0018 17.8 0.1 0.005 16.3 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NB-ARC PF00931.22 gi|385806358|ref|YP_005842756.1| - 0.0061 15.8 1.0 0.45 9.7 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_25 PF13481.6 gi|385806358|ref|YP_005842756.1| - 0.0065 16.1 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|385806358|ref|YP_005842756.1| - 0.024 13.6 0.0 0.041 12.8 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribosomal_L5 PF00281.19 gi|385806358|ref|YP_005842756.1| - 0.06 13.7 0.3 0.14 12.5 0.3 1.6 1 0 0 1 1 1 0 Ribosomal protein L5 VirC1 PF07015.11 gi|385806358|ref|YP_005842756.1| - 0.089 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein IstB_IS21 PF01695.17 gi|385806358|ref|YP_005842756.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Thioredoxin PF00085.20 gi|385806359|ref|YP_005842757.1| - 6.8e-07 29.2 0.0 1.1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|385806359|ref|YP_005842757.1| - 7e-05 23.1 0.6 0.00016 21.9 0.3 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|385806359|ref|YP_005842757.1| - 0.0027 18.0 0.0 0.0044 17.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|385806359|ref|YP_005842757.1| - 0.022 15.2 0.6 0.12 12.8 0.6 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain ETF_QO PF05187.13 gi|385806361|ref|YP_005842759.1| - 2.8e-08 33.8 5.1 3.9e-08 33.4 5.1 1.3 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_7 PF12838.7 gi|385806361|ref|YP_005842759.1| - 1.7e-07 31.7 7.6 0.0021 18.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385806361|ref|YP_005842759.1| - 4.1e-07 29.7 9.8 0.00097 19.1 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|385806361|ref|YP_005842759.1| - 2.4e-06 27.6 11.9 3.9e-06 26.9 11.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|385806361|ref|YP_005842759.1| - 2.6e-05 24.2 5.8 4e-05 23.7 5.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385806361|ref|YP_005842759.1| - 0.0001 22.3 22.3 0.0053 16.8 13.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|385806361|ref|YP_005842759.1| - 0.00043 20.0 1.7 0.00043 20.0 1.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385806361|ref|YP_005842759.1| - 0.0047 17.3 1.4 0.0047 17.3 1.4 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|385806361|ref|YP_005842759.1| - 0.0065 16.6 12.4 0.11 12.6 12.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385806361|ref|YP_005842759.1| - 0.015 16.2 0.7 0.015 16.2 0.7 2.8 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|385806361|ref|YP_005842759.1| - 0.69 10.4 13.8 0.14 12.6 2.4 2.3 1 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385806361|ref|YP_005842759.1| - 1.1 9.5 13.1 1.9 8.7 1.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385806361|ref|YP_005842759.1| - 2.1 9.0 14.2 1.8e+02 2.8 4.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385806361|ref|YP_005842759.1| - 5.2 8.3 18.9 0.26 12.3 3.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|385806361|ref|YP_005842759.1| - 5.6 7.6 11.4 0.94 10.1 2.4 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|385806361|ref|YP_005842759.1| - 8.8 6.1 11.2 2.5 7.9 3.1 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.24 gi|385806362|ref|YP_005842760.1| - 6.7e-18 65.4 0.1 2.9e-08 33.7 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|385806362|ref|YP_005842760.1| - 3.2e-10 39.7 0.0 6.1e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|385806362|ref|YP_005842760.1| - 1.3e-09 37.2 0.2 5.9e-06 25.2 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|385806362|ref|YP_005842760.1| - 1.4e-09 37.6 0.2 2.1e-06 27.1 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|385806362|ref|YP_005842760.1| - 6.8e-09 35.6 0.0 1.2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|385806362|ref|YP_005842760.1| - 4.8e-08 33.1 0.0 1.3e-07 31.7 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|385806362|ref|YP_005842760.1| - 2.9e-07 30.0 0.0 4.9e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|385806362|ref|YP_005842760.1| - 3e-07 30.0 0.0 3.5e-05 23.2 0.0 2.5 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|385806362|ref|YP_005842760.1| - 3.1e-06 26.6 2.5 5.1e-05 22.5 2.5 2.5 2 1 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|385806362|ref|YP_005842760.1| - 8.3e-06 24.9 0.7 0.0088 14.9 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|385806362|ref|YP_005842760.1| - 6.4e-05 23.4 0.0 0.032 14.8 0.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|385806362|ref|YP_005842760.1| - 0.00017 21.0 0.5 0.00037 19.9 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|385806362|ref|YP_005842760.1| - 0.00021 21.3 0.3 0.0013 18.8 0.3 2.2 1 1 0 1 1 1 1 FAD-NAD(P)-binding GMC_oxred_N PF00732.19 gi|385806362|ref|YP_005842760.1| - 0.00057 19.3 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase DUF2106 PF09879.9 gi|385806362|ref|YP_005842760.1| - 0.0046 16.5 0.1 0.45 10.1 0.0 2.3 2 0 0 2 2 2 1 Predicted membrane protein (DUF2106) Lycopene_cycl PF05834.12 gi|385806362|ref|YP_005842760.1| - 0.1 11.6 0.3 0.35 9.9 0.1 2.1 2 1 0 2 2 2 0 Lycopene cyclase protein Acyl-CoA_dh_1 PF00441.24 gi|385806363|ref|YP_005842761.1| - 1.1e-46 158.8 0.1 1.6e-46 158.3 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|385806363|ref|YP_005842761.1| - 3.7e-26 91.1 0.0 6.3e-26 90.4 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|385806363|ref|YP_005842761.1| - 4.8e-18 65.7 0.0 7e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|385806363|ref|YP_005842761.1| - 8.2e-16 58.7 0.0 1.4e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain ETF PF01012.21 gi|385806364|ref|YP_005842762.1| - 2.9e-41 141.3 2.6 3.5e-41 141.1 2.6 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|385806365|ref|YP_005842763.1| - 5.6e-44 150.2 0.0 8.3e-44 149.6 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|385806365|ref|YP_005842763.1| - 1.2e-34 118.1 0.1 3.2e-34 116.8 0.0 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain UPF0147 PF03685.13 gi|385806366|ref|YP_005842764.1| - 1.2e-36 124.6 2.7 1.4e-36 124.4 2.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|385806366|ref|YP_005842764.1| - 0.033 14.4 1.0 4.3 7.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) CitMHS PF03600.16 gi|385806367|ref|YP_005842765.1| - 9.8e-25 87.4 62.0 6.5e-23 81.4 37.1 1.9 1 1 1 2 2 2 2 Citrate transporter DUF1646 PF07854.12 gi|385806367|ref|YP_005842765.1| - 0.26 10.6 42.2 0.5 9.7 21.5 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1646) HTH_5 PF01022.20 gi|385806368|ref|YP_005842766.1| - 2e-12 46.8 1.6 2.9e-12 46.3 0.1 2.0 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|385806368|ref|YP_005842766.1| - 0.00025 20.8 0.0 0.00067 19.5 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385806368|ref|YP_005842766.1| - 0.00053 19.8 0.0 0.00075 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|385806368|ref|YP_005842766.1| - 0.0037 17.3 0.0 0.0051 16.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|385806368|ref|YP_005842766.1| - 0.0069 16.2 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit Phage_rep_org_N PF09681.10 gi|385806368|ref|YP_005842766.1| - 0.0091 15.9 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_45 PF14947.6 gi|385806368|ref|YP_005842766.1| - 0.022 14.7 0.1 0.046 13.7 0.1 1.6 1 1 1 2 2 2 0 Winged helix-turn-helix Cdc6_C PF09079.11 gi|385806368|ref|YP_005842766.1| - 0.036 14.1 0.1 0.061 13.3 0.1 1.3 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DUF2250 PF10007.9 gi|385806368|ref|YP_005842766.1| - 0.037 14.1 0.1 0.15 12.1 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DpnI_C PF17726.1 gi|385806368|ref|YP_005842766.1| - 0.059 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Dam-replacing HTH domain MarR PF01047.22 gi|385806368|ref|YP_005842766.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|385806368|ref|YP_005842766.1| - 0.071 13.1 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|385806368|ref|YP_005842766.1| - 0.075 12.9 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain ABC_tran PF00005.27 gi|385806369|ref|YP_005842767.1| - 5.7e-35 120.8 0.0 8.2e-35 120.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|385806369|ref|YP_005842767.1| - 6.2e-12 45.9 2.4 4.7e-05 23.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|385806369|ref|YP_005842767.1| - 8.9e-07 28.6 0.5 0.012 15.0 0.1 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|385806369|ref|YP_005842767.1| - 2e-06 28.2 0.7 2.4e-05 24.6 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|385806369|ref|YP_005842767.1| - 1.2e-05 25.2 0.5 0.00015 21.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|385806369|ref|YP_005842767.1| - 5.9e-05 22.7 0.1 0.00014 21.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|385806369|ref|YP_005842767.1| - 0.00015 21.7 0.3 0.00055 19.9 0.1 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|385806369|ref|YP_005842767.1| - 0.00072 20.1 0.0 0.0011 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|385806369|ref|YP_005842767.1| - 0.0008 18.9 1.1 0.0044 16.5 0.2 2.0 2 0 0 2 2 2 1 Bacterial TniB protein ABC_ATPase PF09818.9 gi|385806369|ref|YP_005842767.1| - 0.002 17.0 1.0 0.01 14.7 0.2 2.1 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|385806369|ref|YP_005842767.1| - 0.0033 17.8 0.2 0.014 15.8 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|385806369|ref|YP_005842767.1| - 0.004 16.9 0.1 0.012 15.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain HSM3_N PF18795.1 gi|385806369|ref|YP_005842767.1| - 0.0049 16.3 0.2 0.0088 15.5 0.2 1.3 1 1 0 1 1 1 1 DNA mismatch repair protein HSM3, N terminal domain Rad17 PF03215.15 gi|385806369|ref|YP_005842767.1| - 0.0053 16.7 0.1 0.012 15.5 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|385806369|ref|YP_005842767.1| - 0.0094 15.7 0.3 0.48 10.1 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|385806369|ref|YP_005842767.1| - 0.013 15.4 0.1 0.027 14.4 0.1 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|385806369|ref|YP_005842767.1| - 0.015 14.7 0.0 0.022 14.1 0.0 1.4 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|385806369|ref|YP_005842767.1| - 0.021 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|385806369|ref|YP_005842767.1| - 0.021 14.8 0.1 0.92 9.5 0.0 2.7 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|385806369|ref|YP_005842767.1| - 0.041 13.9 0.0 0.71 9.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|385806369|ref|YP_005842767.1| - 0.045 13.9 0.0 0.14 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|385806369|ref|YP_005842767.1| - 0.084 11.8 0.1 0.13 11.1 0.1 1.3 1 0 0 1 1 1 0 PrkA AAA domain RNA_helicase PF00910.22 gi|385806369|ref|YP_005842767.1| - 0.097 13.1 0.0 0.32 11.4 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA PF00004.29 gi|385806369|ref|YP_005842767.1| - 0.098 13.1 0.2 0.82 10.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|385806369|ref|YP_005842767.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|385806369|ref|YP_005842767.1| - 0.17 12.2 0.4 0.52 10.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|385806370|ref|YP_005842768.1| - 7.9e-79 264.9 32.5 9.8e-79 264.6 32.5 1.0 1 0 0 1 1 1 1 FecCD transport family SK_channel PF03530.14 gi|385806370|ref|YP_005842768.1| - 1 9.4 6.1 2.9 7.9 6.1 1.9 1 0 0 1 1 1 0 Calcium-activated SK potassium channel Chitin_synth_2 PF03142.15 gi|385806370|ref|YP_005842768.1| - 1.1 7.8 6.5 1.8 7.1 6.5 1.3 1 0 0 1 1 1 0 Chitin synthase Peripla_BP_2 PF01497.18 gi|385806371|ref|YP_005842769.1| - 2.7e-23 82.8 0.0 4.7e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein FmdE PF02663.14 gi|385806372|ref|YP_005842770.1| - 1.2e-39 135.3 0.0 1.8e-39 134.8 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|385806372|ref|YP_005842770.1| - 7.9e-07 28.9 0.3 1.7e-06 27.9 0.3 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.6 gi|385806372|ref|YP_005842770.1| - 0.79 10.1 5.8 3.2 8.2 0.9 2.9 3 0 0 3 3 3 0 Restriction alleviation protein Lar DUF4428 PF14471.6 gi|385806372|ref|YP_005842770.1| - 6.5 6.8 10.6 0.13 12.2 3.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Ham1p_like PF01725.16 gi|385806373|ref|YP_005842771.1| - 3.5e-43 147.7 0.0 3.9e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.22 gi|385806374|ref|YP_005842772.1| - 9.5e-12 44.9 0.0 1.3e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|385806374|ref|YP_005842772.1| - 6.4e-11 42.1 0.1 8.1e-11 41.8 0.1 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|385806374|ref|YP_005842772.1| - 3.5e-08 33.1 0.0 2.3e-07 30.4 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|385806374|ref|YP_005842772.1| - 6.8e-08 32.1 0.0 8.6e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|385806374|ref|YP_005842772.1| - 5.2e-07 29.8 0.0 0.00011 22.2 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|385806374|ref|YP_005842772.1| - 1.4e-05 24.8 0.1 3.4e-05 23.6 0.1 1.6 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) EcKinase PF02958.20 gi|385806374|ref|YP_005842772.1| - 0.056 12.7 0.0 0.079 12.3 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase DUF1679 PF07914.11 gi|385806374|ref|YP_005842772.1| - 0.062 12.1 0.0 0.1 11.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1679) PI3_PI4_kinase PF00454.27 gi|385806374|ref|YP_005842772.1| - 0.085 12.6 0.0 0.091 12.6 0.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol 3- and 4-kinase Choline_kinase PF01633.20 gi|385806374|ref|YP_005842772.1| - 0.11 12.0 0.4 0.31 10.6 0.4 1.7 1 1 0 1 1 1 0 Choline/ethanolamine kinase Peptidase_M22 PF00814.25 gi|385806375|ref|YP_005842773.1| - 8.3e-76 255.2 0.0 1e-75 254.9 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|385806376|ref|YP_005842774.1| - 6.4e-15 55.0 5.4 7.4e-15 54.8 5.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|385806376|ref|YP_005842774.1| - 0.00018 21.4 3.3 0.00022 21.1 3.3 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385806376|ref|YP_005842774.1| - 0.00037 20.3 2.9 0.00048 20.0 2.9 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|385806376|ref|YP_005842774.1| - 0.0021 18.2 0.9 0.0026 17.9 0.9 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_POL_M_15KD PF02150.16 gi|385806376|ref|YP_005842774.1| - 0.0063 16.4 1.0 0.011 15.6 1.0 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|385806376|ref|YP_005842774.1| - 0.021 15.2 1.1 0.031 14.6 1.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-piccolo PF05715.13 gi|385806376|ref|YP_005842774.1| - 0.029 14.5 0.2 0.029 14.5 0.2 1.1 1 0 0 1 1 1 0 Piccolo Zn-finger GFA PF04828.14 gi|385806376|ref|YP_005842774.1| - 0.033 14.5 1.7 1 9.7 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 gi|385806376|ref|YP_005842774.1| - 0.04 14.1 4.0 0.068 13.3 3.9 1.5 1 1 0 1 1 1 0 Ribosomal protein L37e DUF2387 PF09526.10 gi|385806376|ref|YP_005842774.1| - 0.04 14.1 0.7 0.06 13.5 0.7 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-LITAF-like PF10601.9 gi|385806376|ref|YP_005842774.1| - 0.043 14.1 1.6 0.35 11.2 0.2 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DZR PF12773.7 gi|385806376|ref|YP_005842774.1| - 0.049 13.7 2.0 0.14 12.2 2.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|385806376|ref|YP_005842774.1| - 0.054 13.4 3.9 0.99 9.4 3.9 2.1 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|385806376|ref|YP_005842774.1| - 0.064 13.0 4.6 0.45 10.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.6 gi|385806376|ref|YP_005842774.1| - 0.15 12.1 0.5 0.15 12.1 0.5 2.2 1 1 1 2 2 2 0 YhfH-like protein zinc_ribbon_10 PF10058.9 gi|385806376|ref|YP_005842774.1| - 0.15 11.8 2.4 0.35 10.6 2.3 1.6 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|385806376|ref|YP_005842774.1| - 0.17 11.3 0.4 0.17 11.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|385806376|ref|YP_005842774.1| - 0.27 10.9 5.6 0.96 9.2 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_13 PF09855.9 gi|385806376|ref|YP_005842774.1| - 0.34 11.1 0.5 0.34 11.1 0.5 2.3 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TF_Zn_Ribbon PF08271.12 gi|385806376|ref|YP_005842774.1| - 1.6 8.3 6.9 3.2 7.4 4.5 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|385806376|ref|YP_005842774.1| - 2.5 8.1 11.0 2.8 7.9 0.4 2.7 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Ribosomal_S24e PF01282.19 gi|385806377|ref|YP_005842775.1| - 8.6e-18 64.1 2.4 1.7e-17 63.1 2.4 1.6 1 1 0 1 1 1 1 Ribosomal protein S24e Gly_kinase PF02595.15 gi|385806377|ref|YP_005842775.1| - 0.14 11.1 0.1 0.26 10.3 0.0 1.5 2 0 0 2 2 2 0 Glycerate kinase family SBDS PF01172.18 gi|385806378|ref|YP_005842776.1| - 6.7e-23 80.6 0.7 1.5e-22 79.5 0.7 1.6 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|385806378|ref|YP_005842776.1| - 1.1e-21 77.0 2.4 1.8e-21 76.3 2.4 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.11 gi|385806378|ref|YP_005842776.1| - 0.0068 16.3 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|385806378|ref|YP_005842776.1| - 0.016 15.2 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Elongation factor G C-terminus KH_6 PF15985.5 gi|385806379|ref|YP_005842777.1| - 9.4e-05 22.7 0.1 0.00017 21.8 0.1 1.5 1 0 0 1 1 1 1 KH domain RNase_PH PF01138.21 gi|385806380|ref|YP_005842778.1| - 4.7e-35 121.0 0.0 6.3e-35 120.6 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|385806380|ref|YP_005842778.1| - 1.4e-15 57.0 0.4 2.8e-15 56.1 0.4 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|385806381|ref|YP_005842779.1| - 2.8e-24 86.1 0.0 5.2e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|385806381|ref|YP_005842779.1| - 2e-11 43.7 0.0 1.3e-10 41.2 0.0 2.2 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|385806382|ref|YP_005842780.1| - 2.6e-33 113.9 1.6 2.8e-33 113.8 1.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|385806382|ref|YP_005842780.1| - 5.3e-07 29.5 1.3 8e-07 28.9 1.3 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|385806382|ref|YP_005842780.1| - 0.0023 17.8 0.3 0.003 17.4 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4379 PF14311.6 gi|385806382|ref|YP_005842780.1| - 0.0092 16.3 2.2 0.11 12.9 0.4 2.2 2 0 0 2 2 2 1 Probable Zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|385806382|ref|YP_005842780.1| - 0.06 13.1 3.0 3.3 7.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-3CxxC_2 PF17180.4 gi|385806382|ref|YP_005842780.1| - 0.065 14.0 0.6 0.39 11.5 0.2 2.0 2 0 0 2 2 2 0 Zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|385806382|ref|YP_005842780.1| - 0.086 12.4 1.4 7.9 6.1 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Rep_fac-A_C PF08646.10 gi|385806382|ref|YP_005842780.1| - 0.2 11.4 0.3 0.24 11.1 0.3 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain CpXC PF14353.6 gi|385806382|ref|YP_005842780.1| - 0.24 11.5 1.0 2.5 8.2 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Ima1_N PF09779.9 gi|385806382|ref|YP_005842780.1| - 0.39 11.6 2.5 1.5 9.7 0.3 2.0 1 1 1 2 2 2 0 Ima1 N-terminal domain zf-H2C2_2 PF13465.6 gi|385806382|ref|YP_005842780.1| - 0.78 10.3 4.8 1.3 9.5 0.5 2.2 1 1 1 2 2 2 0 Zinc-finger double domain HalOD2 PF18547.1 gi|385806382|ref|YP_005842780.1| - 2.4 8.1 6.6 0.45 10.4 1.8 2.0 1 1 1 2 2 2 0 Halobacterial output domain 2 Brix PF04427.18 gi|385806383|ref|YP_005842781.1| - 0.034 14.2 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 Brix domain Pcc1 PF09341.10 gi|385806384|ref|YP_005842782.1| - 0.00012 22.1 0.0 0.00015 21.9 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 HALZ PF02183.18 gi|385806384|ref|YP_005842782.1| - 0.031 14.5 2.1 0.06 13.6 0.1 2.4 2 2 1 3 3 3 0 Homeobox associated leucine zipper Prefoldin_2 PF01920.20 gi|385806386|ref|YP_005842784.1| - 1.9e-18 66.4 12.7 2.3e-18 66.1 12.7 1.1 1 0 0 1 1 1 1 Prefoldin subunit Med28 PF11594.8 gi|385806386|ref|YP_005842784.1| - 0.013 15.6 4.3 0.33 11.0 0.2 2.1 1 1 1 2 2 2 0 Mediator complex subunit 28 BCAS2 PF05700.11 gi|385806386|ref|YP_005842784.1| - 0.014 15.1 4.4 0.34 10.6 0.2 2.0 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Exonuc_VII_L PF02601.15 gi|385806386|ref|YP_005842784.1| - 0.015 14.9 1.3 0.018 14.6 1.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit K-box PF01486.17 gi|385806386|ref|YP_005842784.1| - 0.016 15.4 7.7 0.39 10.9 0.5 2.2 2 0 0 2 2 2 0 K-box region KxDL PF10241.9 gi|385806386|ref|YP_005842784.1| - 0.019 15.2 2.0 3.1 8.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein DivIVA PF05103.13 gi|385806386|ref|YP_005842784.1| - 0.044 13.9 7.8 0.69 10.0 1.0 2.3 2 1 0 2 2 2 0 DivIVA protein NPV_P10 PF05531.12 gi|385806386|ref|YP_005842784.1| - 0.054 14.0 1.7 0.52 10.8 0.2 2.3 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein NYD-SP28_assoc PF14775.6 gi|385806386|ref|YP_005842784.1| - 0.054 13.6 1.2 0.054 13.6 1.2 2.7 2 1 0 2 2 2 0 Sperm tail C-terminal domain Syntaxin_2 PF14523.6 gi|385806386|ref|YP_005842784.1| - 0.064 13.6 9.0 0.91 9.9 1.1 3.2 1 1 1 2 2 2 0 Syntaxin-like protein Filament PF00038.21 gi|385806386|ref|YP_005842784.1| - 0.064 12.8 9.6 0.46 10.0 9.7 1.8 1 1 0 1 1 1 0 Intermediate filament protein KASH_CCD PF14662.6 gi|385806386|ref|YP_005842784.1| - 0.066 13.0 10.7 0.16 11.7 2.2 2.1 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Laminin_II PF06009.12 gi|385806386|ref|YP_005842784.1| - 0.089 12.8 2.4 1.2 9.2 0.2 2.1 2 0 0 2 2 2 0 Laminin Domain II Jnk-SapK_ap_N PF09744.9 gi|385806386|ref|YP_005842784.1| - 0.093 13.0 7.6 0.31 11.3 1.3 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 eIF-6 PF01912.18 gi|385806386|ref|YP_005842784.1| - 0.096 12.1 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 eIF-6 family T3SchapCesA PF11439.8 gi|385806386|ref|YP_005842784.1| - 0.11 12.6 3.3 0.14 12.3 0.1 2.2 2 1 0 2 2 2 0 Type III secretion system filament chaperone CesA Vps54_N PF10475.9 gi|385806386|ref|YP_005842784.1| - 0.11 11.7 4.1 0.37 10.0 0.6 2.0 2 0 0 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex YtxH PF12732.7 gi|385806386|ref|YP_005842784.1| - 0.13 12.8 1.0 12 6.5 1.1 2.6 1 1 1 2 2 2 0 YtxH-like protein FlxA PF14282.6 gi|385806386|ref|YP_005842784.1| - 0.13 12.3 8.6 0.35 10.9 0.6 2.2 2 0 0 2 2 2 0 FlxA-like protein Cullin_Nedd8 PF10557.9 gi|385806386|ref|YP_005842784.1| - 0.13 12.3 3.2 0.84 9.7 0.3 2.4 2 1 0 2 2 2 0 Cullin protein neddylation domain RlaP PF10127.9 gi|385806386|ref|YP_005842784.1| - 0.14 11.8 3.4 0.12 12.0 0.9 1.8 1 1 1 2 2 2 0 RNA repair pathway DNA polymerase beta family TraC PF07820.12 gi|385806386|ref|YP_005842784.1| - 0.15 12.4 0.8 0.8 10.1 0.0 2.3 2 1 0 2 2 2 0 TraC-like protein DUF1664 PF07889.12 gi|385806386|ref|YP_005842784.1| - 0.15 12.1 1.2 5.8 7.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.9 gi|385806386|ref|YP_005842784.1| - 0.17 11.9 11.7 1.6 8.7 1.2 2.3 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AATF-Che1 PF13339.6 gi|385806386|ref|YP_005842784.1| - 0.17 12.5 4.0 0.79 10.4 3.9 1.8 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor ACCA PF03255.14 gi|385806386|ref|YP_005842784.1| - 0.17 11.7 5.1 0.37 10.7 1.1 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HlyD_2 PF12700.7 gi|385806386|ref|YP_005842784.1| - 0.19 10.4 8.0 0.23 10.2 8.0 1.0 1 0 0 1 1 1 0 HlyD family secretion protein OmpH PF03938.14 gi|385806386|ref|YP_005842784.1| - 0.21 11.9 8.0 1.2 9.5 1.6 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Snapin_Pallidin PF14712.6 gi|385806386|ref|YP_005842784.1| - 0.22 12.0 8.3 0.2 12.1 1.7 2.3 2 1 0 2 2 2 0 Snapin/Pallidin DUF948 PF06103.11 gi|385806386|ref|YP_005842784.1| - 0.29 11.4 1.1 2.8 8.3 0.2 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FapA PF03961.13 gi|385806386|ref|YP_005842784.1| - 0.38 9.3 6.4 0.56 8.7 6.4 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A RecG_N PF17190.4 gi|385806386|ref|YP_005842784.1| - 0.43 11.3 13.1 2.4 9.0 4.4 2.1 1 1 1 2 2 2 0 RecG N-terminal helical domain DUF2570 PF10828.8 gi|385806386|ref|YP_005842784.1| - 0.47 10.3 4.8 0.56 10.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) FliD_C PF07195.12 gi|385806386|ref|YP_005842784.1| - 0.48 9.8 6.6 1.2 8.4 3.2 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus PCRF PF03462.18 gi|385806386|ref|YP_005842784.1| - 0.56 10.0 7.8 0.87 9.4 3.1 1.9 1 1 1 2 2 2 0 PCRF domain APG6_N PF17675.1 gi|385806386|ref|YP_005842784.1| - 0.64 10.5 13.3 1 9.9 2.2 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region ZapB PF06005.12 gi|385806386|ref|YP_005842784.1| - 0.68 10.4 13.9 3.7 8.1 1.7 2.7 2 1 0 2 2 2 0 Cell division protein ZapB CLZ PF16526.5 gi|385806386|ref|YP_005842784.1| - 0.93 9.9 10.6 2.7 8.4 1.9 2.5 2 2 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Bap31_Bap29_C PF18035.1 gi|385806386|ref|YP_005842784.1| - 0.99 9.5 13.9 0.19 11.7 3.2 2.7 2 1 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain 4HB_MCP_1 PF12729.7 gi|385806386|ref|YP_005842784.1| - 1.1 8.8 9.0 1.7 8.1 1.5 2.4 2 1 0 2 2 2 0 Four helix bundle sensory module for signal transduction CdvA PF18822.1 gi|385806386|ref|YP_005842784.1| - 1.3 8.9 14.6 1.1 9.1 4.3 2.8 2 1 1 3 3 3 0 CdvA-like coiled-coil domain IL31 PF15209.6 gi|385806386|ref|YP_005842784.1| - 1.4 8.7 7.3 1.4 8.7 0.6 2.5 1 1 1 2 2 2 0 Interleukin 31 FlaC_arch PF05377.11 gi|385806386|ref|YP_005842784.1| - 1.5 9.3 11.0 3.4 8.1 0.9 2.8 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) CorA PF01544.18 gi|385806386|ref|YP_005842784.1| - 1.6 8.0 6.4 28 3.9 6.4 2.1 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF5339 PF17274.2 gi|385806386|ref|YP_005842784.1| - 2.2 9.2 6.0 0.65 10.9 1.0 2.2 2 1 0 2 2 2 0 Family of unknown function (DUF5339) DUF4795 PF16043.5 gi|385806386|ref|YP_005842784.1| - 2.3 7.8 11.1 7.6 6.1 11.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) TraF_2 PF13729.6 gi|385806386|ref|YP_005842784.1| - 2.5 7.4 4.7 1.2 8.5 0.6 1.9 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Sas10_Utp3 PF04000.15 gi|385806386|ref|YP_005842784.1| - 3.2 8.5 8.1 11 6.7 0.2 2.7 2 2 1 3 3 3 0 Sas10/Utp3/C1D family FliD_N PF02465.18 gi|385806386|ref|YP_005842784.1| - 3.5 8.4 7.3 2.6 8.8 1.0 2.4 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus Osmo_CC PF08946.10 gi|385806386|ref|YP_005842784.1| - 3.8 7.8 12.1 2.1 8.7 0.3 3.2 2 1 2 4 4 4 0 Osmosensory transporter coiled coil GvpK PF05121.12 gi|385806386|ref|YP_005842784.1| - 4.2 7.5 8.1 5.1 7.2 1.4 2.1 1 1 1 2 2 2 0 Gas vesicle protein K Prefoldin PF02996.17 gi|385806386|ref|YP_005842784.1| - 5.1 7.0 13.7 2.4 8.1 1.0 3.1 1 1 0 2 2 2 0 Prefoldin subunit DHR10 PF18595.1 gi|385806386|ref|YP_005842784.1| - 5.6 7.1 15.5 1.9 8.6 3.8 2.4 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain DHH PF01368.20 gi|385806388|ref|YP_005842786.1| - 1.2e-10 41.5 0.2 3.3e-09 36.9 0.2 2.3 1 1 1 2 2 2 2 DHH family Lzipper-MIP1 PF14389.6 gi|385806388|ref|YP_005842786.1| - 0.017 15.4 2.3 0.024 14.9 0.1 2.4 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DUF4651 PF15513.6 gi|385806388|ref|YP_005842786.1| - 0.084 12.7 0.0 0.26 11.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) YpjP PF14005.6 gi|385806388|ref|YP_005842786.1| - 0.37 10.8 1.7 1.6 8.7 0.2 2.4 2 0 0 2 2 2 0 YpjP-like protein DHHA1 PF02272.19 gi|385806388|ref|YP_005842786.1| - 0.41 11.1 4.5 0.15 12.4 0.8 2.2 2 1 0 2 2 2 0 DHHA1 domain GTP_EFTU PF00009.27 gi|385806389|ref|YP_005842787.1| - 9.5e-66 221.0 0.5 1.3e-65 220.6 0.5 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|385806389|ref|YP_005842787.1| - 8.5e-31 106.3 0.0 3e-30 104.5 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|385806389|ref|YP_005842787.1| - 7.5e-24 83.6 0.0 1.7e-23 82.5 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|385806389|ref|YP_005842787.1| - 7.4e-22 77.2 0.0 1.9e-21 75.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|385806389|ref|YP_005842787.1| - 3.1e-11 43.5 0.1 9.8e-11 41.9 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|385806389|ref|YP_005842787.1| - 2.4e-05 24.4 0.3 7.5e-05 22.8 0.3 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase HIGH_NTase1_ass PF16581.5 gi|385806389|ref|YP_005842787.1| - 0.019 14.9 0.5 0.059 13.4 0.0 2.0 2 0 0 2 2 2 0 Cytidyltransferase-related C-terminal region TFA2_Winged_2 PF18121.1 gi|385806389|ref|YP_005842787.1| - 0.028 14.1 0.0 0.096 12.4 0.0 1.9 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 RF3_C PF16658.5 gi|385806389|ref|YP_005842787.1| - 0.034 14.0 0.0 0.13 12.1 0.0 2.0 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain Oxidored_q4 PF00507.19 gi|385806390|ref|YP_005842788.1| - 1.2e-05 25.4 2.0 1.2e-05 25.4 2.0 1.6 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 S_4TM PF18159.1 gi|385806390|ref|YP_005842788.1| - 0.02 14.2 0.5 0.02 14.2 0.5 1.8 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain SNARE_assoc PF09335.11 gi|385806390|ref|YP_005842788.1| - 0.031 14.7 5.9 0.038 14.5 5.9 1.1 1 0 0 1 1 1 0 SNARE associated Golgi protein GET2 PF08690.10 gi|385806390|ref|YP_005842788.1| - 0.13 11.9 0.9 0.16 11.7 0.9 1.1 1 0 0 1 1 1 0 GET complex subunit GET2 Insulin_TMD PF17870.1 gi|385806390|ref|YP_005842788.1| - 0.44 10.7 7.1 0.49 10.5 0.4 2.7 3 0 0 3 3 3 0 Insulin receptor trans-membrane segment Oxidored_q6 PF01058.22 gi|385806391|ref|YP_005842789.1| - 1.5e-22 79.9 0.1 2e-22 79.4 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit US6 PF17616.2 gi|385806391|ref|YP_005842789.1| - 0.009 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Viral unique short region 6 Complex1_30kDa PF00329.19 gi|385806392|ref|YP_005842790.1| - 7.1e-32 110.6 0.1 8.4e-32 110.4 0.1 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.19 gi|385806393|ref|YP_005842791.1| - 2.2e-88 295.9 0.1 2.7e-88 295.6 0.1 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|385806393|ref|YP_005842791.1| - 0.093 11.6 0.0 10 4.8 0.0 2.2 2 0 0 2 2 2 0 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|385806394|ref|YP_005842792.1| - 1.9e-78 263.8 24.8 2.3e-78 263.6 24.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|385806395|ref|YP_005842793.1| - 7e-16 57.3 14.1 2.8e-08 33.2 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385806395|ref|YP_005842793.1| - 1.8e-13 50.8 21.7 1.1e-10 41.9 11.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|385806395|ref|YP_005842793.1| - 4.2e-11 42.4 14.3 5.6e-06 26.2 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|385806395|ref|YP_005842793.1| - 5.6e-11 43.2 4.8 0.00018 22.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|385806395|ref|YP_005842793.1| - 5.6e-10 39.2 11.0 1.2e-09 38.2 11.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385806395|ref|YP_005842793.1| - 9.2e-10 38.5 9.9 1.4e-09 37.9 9.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385806395|ref|YP_005842793.1| - 5.8e-09 36.0 8.3 9.1e-09 35.3 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|385806395|ref|YP_005842793.1| - 9.1e-09 34.9 14.1 5.6e-05 23.0 1.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385806395|ref|YP_005842793.1| - 1e-07 32.3 2.9 0.0084 16.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|385806395|ref|YP_005842793.1| - 4.6e-06 26.7 10.6 0.0043 17.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|385806395|ref|YP_005842793.1| - 6.8e-05 23.3 11.1 0.057 14.0 3.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385806395|ref|YP_005842793.1| - 0.00015 22.4 3.8 0.23 12.2 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|385806395|ref|YP_005842793.1| - 0.0021 18.6 12.3 0.029 14.9 1.4 2.6 3 0 0 3 3 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|385806395|ref|YP_005842793.1| - 0.0029 17.8 9.8 0.097 12.9 0.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385806395|ref|YP_005842793.1| - 0.031 15.2 18.0 0.58 11.2 4.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|385806395|ref|YP_005842793.1| - 0.039 14.1 6.9 0.46 10.6 7.6 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|385806395|ref|YP_005842793.1| - 0.061 14.2 12.3 0.56 11.1 1.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|385806395|ref|YP_005842793.1| - 6.7 6.5 10.8 8.7 6.2 1.5 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Oxidored_q3 PF00499.20 gi|385806396|ref|YP_005842794.1| - 5.6e-17 61.8 18.6 5.6e-17 61.8 18.6 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.24 gi|385806397|ref|YP_005842795.1| - 5.5e-12 45.2 9.7 7.6e-12 44.8 9.7 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TM140 PF14985.6 gi|385806397|ref|YP_005842795.1| - 0.33 10.5 4.0 0.77 9.3 4.0 1.6 1 1 0 1 1 1 0 TM140 protein family TMEM43 PF07787.12 gi|385806397|ref|YP_005842795.1| - 3.5 7.0 6.1 4 6.8 6.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 Proton_antipo_M PF00361.20 gi|385806398|ref|YP_005842796.1| - 1.8e-61 207.9 27.5 1.8e-61 207.9 27.5 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|385806399|ref|YP_005842797.1| - 5e-47 160.5 29.8 4.9e-43 147.4 28.4 5.4 4 2 0 4 4 4 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|385806399|ref|YP_005842797.1| - 1.1e-16 60.7 5.1 1.4e-15 57.1 5.1 3.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|385806400|ref|YP_005842798.1| - 1.3e-30 106.7 34.8 1.3e-30 106.7 34.8 2.7 2 2 0 2 2 2 1 Proton-conducting membrane transporter AAA PF00004.29 gi|385806401|ref|YP_005842799.1| - 6e-14 52.6 0.0 1.6e-13 51.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385806401|ref|YP_005842799.1| - 2.2e-11 43.7 0.0 6.4e-11 42.2 0.0 1.8 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|385806401|ref|YP_005842799.1| - 9.2e-07 29.0 0.5 7.3e-06 26.0 0.1 2.6 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|385806401|ref|YP_005842799.1| - 1.2e-06 28.9 0.1 0.00077 19.8 0.0 3.4 3 1 1 4 4 4 1 AAA domain AAA_14 PF13173.6 gi|385806401|ref|YP_005842799.1| - 1.5e-06 28.3 0.0 4.3e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|385806401|ref|YP_005842799.1| - 1.7e-06 28.5 0.0 7.4e-06 26.5 0.0 2.1 2 1 0 2 2 1 1 AAA ATPase domain RFC1 PF08519.12 gi|385806401|ref|YP_005842799.1| - 1.4e-05 25.3 0.4 2.4e-05 24.6 0.4 1.4 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_5 PF07728.14 gi|385806401|ref|YP_005842799.1| - 3.2e-05 23.9 0.0 7.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|385806401|ref|YP_005842799.1| - 4.2e-05 23.7 0.1 0.00014 22.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|385806401|ref|YP_005842799.1| - 9.9e-05 22.6 0.1 0.00031 21.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|385806401|ref|YP_005842799.1| - 0.00016 21.5 0.0 0.00034 20.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|385806401|ref|YP_005842799.1| - 0.00031 21.3 0.6 0.00085 19.9 0.0 2.1 3 0 0 3 3 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|385806401|ref|YP_005842799.1| - 0.00041 20.2 0.4 0.0011 18.8 0.0 1.9 2 0 0 2 2 1 1 DNA polymerase III, delta subunit Zeta_toxin PF06414.12 gi|385806401|ref|YP_005842799.1| - 0.00058 19.2 0.0 0.0014 17.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin RNA_helicase PF00910.22 gi|385806401|ref|YP_005842799.1| - 0.00063 20.1 0.0 0.0015 18.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.12 gi|385806401|ref|YP_005842799.1| - 0.0007 19.5 0.2 0.68 9.8 0.0 3.1 3 0 0 3 3 3 1 NACHT domain AAA_17 PF13207.6 gi|385806401|ref|YP_005842799.1| - 0.00098 19.6 0.1 0.0051 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|385806401|ref|YP_005842799.1| - 0.0013 17.9 0.0 0.0041 16.3 0.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|385806401|ref|YP_005842799.1| - 0.003 16.8 0.0 0.86 8.7 0.0 3.0 2 1 1 3 3 3 1 NB-ARC domain RsgA_GTPase PF03193.16 gi|385806401|ref|YP_005842799.1| - 0.0045 16.9 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|385806401|ref|YP_005842799.1| - 0.0047 16.7 0.0 0.014 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|385806401|ref|YP_005842799.1| - 0.0076 16.0 0.1 0.39 10.4 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.23 gi|385806401|ref|YP_005842799.1| - 0.0088 16.1 0.0 0.019 15.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|385806401|ref|YP_005842799.1| - 0.012 15.1 0.0 0.028 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|385806401|ref|YP_005842799.1| - 0.013 15.4 0.2 0.052 13.5 0.0 2.3 2 1 0 2 2 1 0 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|385806401|ref|YP_005842799.1| - 0.015 14.4 0.2 0.083 12.0 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|385806401|ref|YP_005842799.1| - 0.017 15.1 0.0 0.063 13.3 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE KAP_NTPase PF07693.14 gi|385806401|ref|YP_005842799.1| - 0.02 14.1 0.1 0.062 12.5 0.0 1.8 2 0 0 2 2 2 0 KAP family P-loop domain ABC_tran PF00005.27 gi|385806401|ref|YP_005842799.1| - 0.022 15.3 0.2 0.2 12.2 0.0 2.6 2 1 1 3 3 3 0 ABC transporter RsdA_SigD_bd PF16751.5 gi|385806401|ref|YP_005842799.1| - 0.023 15.0 0.0 0.13 12.6 0.0 2.1 2 0 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region TIP49 PF06068.13 gi|385806401|ref|YP_005842799.1| - 0.046 12.9 0.0 0.093 11.9 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain dNK PF01712.19 gi|385806401|ref|YP_005842799.1| - 0.047 13.5 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_25 PF13481.6 gi|385806401|ref|YP_005842799.1| - 0.052 13.1 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|385806401|ref|YP_005842799.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Band_7 PF01145.25 gi|385806401|ref|YP_005842799.1| - 0.073 13.1 0.0 0.26 11.3 0.0 2.0 1 1 0 1 1 1 0 SPFH domain / Band 7 family SRPRB PF09439.10 gi|385806401|ref|YP_005842799.1| - 0.077 12.4 0.0 0.43 10.0 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_2 PF07724.14 gi|385806401|ref|YP_005842799.1| - 0.093 12.8 0.2 0.24 11.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) Roc PF08477.13 gi|385806401|ref|YP_005842799.1| - 0.099 12.9 0.1 0.54 10.5 0.0 2.3 2 1 1 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase DUF2774 PF11242.8 gi|385806401|ref|YP_005842799.1| - 0.1 12.8 0.6 0.24 11.6 0.0 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF2774) TniB PF05621.11 gi|385806401|ref|YP_005842799.1| - 0.11 11.9 0.5 0.83 9.0 0.0 2.5 3 1 1 4 4 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|385806401|ref|YP_005842799.1| - 0.12 12.7 0.0 0.52 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|385806401|ref|YP_005842799.1| - 0.12 12.1 0.0 2.1 8.1 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_11 PF13086.6 gi|385806401|ref|YP_005842799.1| - 0.15 11.9 4.7 0.45 10.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|385806401|ref|YP_005842799.1| - 0.22 12.0 0.0 0.22 12.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain Rep_fac_C PF08542.11 gi|385806402|ref|YP_005842800.1| - 7.2e-22 77.6 0.1 1.6e-21 76.5 0.1 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|385806402|ref|YP_005842800.1| - 1.8e-14 53.9 0.1 4.8e-10 39.5 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA PF00004.29 gi|385806402|ref|YP_005842800.1| - 2.4e-14 53.9 0.0 4.5e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|385806402|ref|YP_005842800.1| - 4.3e-06 26.5 0.0 2.7e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|385806402|ref|YP_005842800.1| - 8.6e-06 26.1 0.1 0.029 14.6 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|385806402|ref|YP_005842800.1| - 1.2e-05 25.2 0.0 2.4e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|385806402|ref|YP_005842800.1| - 2.4e-05 24.4 0.0 6.7e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|385806402|ref|YP_005842800.1| - 4.9e-05 23.8 0.0 0.0099 16.3 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain ResIII PF04851.15 gi|385806402|ref|YP_005842800.1| - 7.1e-05 22.9 0.0 0.00038 20.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|385806402|ref|YP_005842800.1| - 7.4e-05 22.8 0.1 0.00055 19.9 0.0 2.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_assoc_2 PF16193.5 gi|385806402|ref|YP_005842800.1| - 0.00015 22.0 0.0 0.00033 20.9 0.0 1.6 1 0 0 1 1 1 1 AAA C-terminal domain DNA_pol3_delta PF06144.13 gi|385806402|ref|YP_005842800.1| - 0.00046 20.0 0.6 0.0023 17.7 0.2 2.2 3 0 0 3 3 3 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|385806402|ref|YP_005842800.1| - 0.00049 20.1 0.0 0.0019 18.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain PhoH PF02562.16 gi|385806402|ref|YP_005842800.1| - 0.00062 19.3 0.3 0.059 12.8 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_11 PF13086.6 gi|385806402|ref|YP_005842800.1| - 0.00067 19.5 0.0 0.00084 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|385806402|ref|YP_005842800.1| - 0.00072 19.3 0.0 0.0018 18.1 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|385806402|ref|YP_005842800.1| - 0.0011 18.5 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|385806402|ref|YP_005842800.1| - 0.0016 17.8 0.0 0.15 11.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|385806402|ref|YP_005842800.1| - 0.0023 17.7 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|385806402|ref|YP_005842800.1| - 0.0038 16.8 0.7 0.037 13.6 0.2 2.5 2 2 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|385806402|ref|YP_005842800.1| - 0.004 17.7 0.2 0.071 13.7 0.0 2.7 1 1 1 3 3 3 1 AAA domain TniB PF05621.11 gi|385806402|ref|YP_005842800.1| - 0.0046 16.4 0.0 0.19 11.1 0.0 2.5 1 1 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|385806402|ref|YP_005842800.1| - 0.0049 16.8 0.1 0.008 16.1 0.1 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|385806402|ref|YP_005842800.1| - 0.0055 16.5 0.4 1.8 8.3 0.0 2.5 1 1 1 2 2 2 1 DEAD/DEAH box helicase DUF815 PF05673.13 gi|385806402|ref|YP_005842800.1| - 0.0057 15.9 0.0 0.009 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|385806402|ref|YP_005842800.1| - 0.0061 15.8 0.0 0.013 14.7 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain NACHT PF05729.12 gi|385806402|ref|YP_005842800.1| - 0.028 14.3 0.1 0.35 10.8 0.1 2.2 1 1 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|385806402|ref|YP_005842800.1| - 0.03 14.7 0.6 0.46 10.8 0.1 2.6 2 1 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|385806402|ref|YP_005842800.1| - 0.032 14.0 0.3 0.41 10.4 0.1 2.5 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|385806402|ref|YP_005842800.1| - 0.073 12.4 0.0 0.23 10.8 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family Sigma54_activat PF00158.26 gi|385806402|ref|YP_005842800.1| - 0.086 12.5 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain ATPase PF06745.13 gi|385806402|ref|YP_005842800.1| - 0.091 12.1 0.7 0.55 9.5 0.0 2.4 2 1 1 3 3 3 0 KaiC T2SSE PF00437.20 gi|385806402|ref|YP_005842800.1| - 0.091 11.8 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein SNF2_N PF00176.23 gi|385806402|ref|YP_005842800.1| - 0.11 11.2 0.0 1.1 8.0 0.0 2.0 1 1 1 2 2 2 0 SNF2 family N-terminal domain AAA_33 PF13671.6 gi|385806402|ref|YP_005842800.1| - 0.18 12.0 0.2 0.4 10.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain Adenosine_kin PF04008.14 gi|385806403|ref|YP_005842801.1| - 4.7e-75 250.6 0.3 5.4e-75 250.4 0.3 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DUF2122 PF09895.9 gi|385806403|ref|YP_005842801.1| - 0.056 13.8 0.0 0.38 11.2 0.0 2.1 1 1 1 2 2 2 0 RecB-family nuclease (DUF2122) Prok-JAB PF14464.6 gi|385806405|ref|YP_005842803.1| - 0.015 15.0 0.0 0.072 12.9 0.0 1.9 2 0 0 2 2 2 0 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|385806405|ref|YP_005842803.1| - 0.041 13.8 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 RadC-like JAB domain B12-binding PF02310.19 gi|385806406|ref|YP_005842804.1| - 3.4e-11 43.2 0.0 8.1e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.21 gi|385806406|ref|YP_005842804.1| - 1.3e-05 25.6 0.0 2.9e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF2680 PF10925.8 gi|385806406|ref|YP_005842804.1| - 0.06 13.4 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) Cdc6_C PF09079.11 gi|385806407|ref|YP_005842805.1| - 1.1e-14 54.1 0.0 5.7e-14 51.8 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|385806407|ref|YP_005842805.1| - 2e-09 37.8 0.0 7.1e-09 36.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|385806407|ref|YP_005842805.1| - 5.2e-05 23.7 0.0 0.00023 21.6 0.0 2.0 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|385806407|ref|YP_005842805.1| - 0.00016 22.1 0.1 0.0029 18.0 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|385806407|ref|YP_005842805.1| - 0.0098 15.3 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein AAA_5 PF07728.14 gi|385806407|ref|YP_005842805.1| - 0.021 14.8 0.0 2.2 8.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|385806407|ref|YP_005842805.1| - 0.025 14.5 0.3 0.05 13.5 0.3 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|385806407|ref|YP_005842805.1| - 0.056 12.6 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ResIII PF04851.15 gi|385806407|ref|YP_005842805.1| - 0.069 13.1 0.0 0.93 9.5 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|385806407|ref|YP_005842805.1| - 0.1 12.6 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|385806407|ref|YP_005842805.1| - 0.12 12.1 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF61 PF01886.16 gi|385806407|ref|YP_005842805.1| - 0.12 12.4 0.1 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF61 AAA_7 PF12775.7 gi|385806407|ref|YP_005842805.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region HTH_5 PF01022.20 gi|385806408|ref|YP_005842806.1| - 2.7e-07 30.3 0.2 5.8e-07 29.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|385806408|ref|YP_005842806.1| - 1.1e-05 24.8 0.2 1.6e-05 24.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|385806408|ref|YP_005842806.1| - 0.001 18.9 0.2 0.0012 18.7 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|385806408|ref|YP_005842806.1| - 0.0025 17.7 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|385806408|ref|YP_005842806.1| - 0.011 15.7 0.1 0.014 15.3 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|385806408|ref|YP_005842806.1| - 0.015 15.2 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|385806408|ref|YP_005842806.1| - 0.017 15.1 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.19 gi|385806408|ref|YP_005842806.1| - 0.026 14.7 0.1 0.042 14.1 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|385806408|ref|YP_005842806.1| - 0.044 14.1 0.0 0.062 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|385806408|ref|YP_005842806.1| - 0.071 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|385806408|ref|YP_005842806.1| - 0.087 13.3 0.2 0.12 12.9 0.2 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|385806408|ref|YP_005842806.1| - 0.094 12.8 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Tfb2 PF03849.14 gi|385806408|ref|YP_005842806.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Transcription factor Tfb2 ATPase PF06745.13 gi|385806409|ref|YP_005842807.1| - 9.2e-57 192.0 1.0 1.1e-56 191.8 1.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|385806409|ref|YP_005842807.1| - 3.9e-07 29.1 0.0 5.9e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein Rad51 PF08423.11 gi|385806409|ref|YP_005842807.1| - 7.8e-07 28.6 0.1 1.3e-06 27.9 0.1 1.5 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|385806409|ref|YP_005842807.1| - 1.2e-06 28.3 0.0 2.3e-06 27.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|385806409|ref|YP_005842807.1| - 2.1e-05 24.4 0.0 3.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|385806409|ref|YP_005842807.1| - 2.4e-05 23.8 0.0 5.8e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|385806409|ref|YP_005842807.1| - 0.00012 21.6 0.1 0.00018 21.1 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ResIII PF04851.15 gi|385806409|ref|YP_005842807.1| - 0.0013 18.7 0.1 0.0022 18.0 0.1 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|385806409|ref|YP_005842807.1| - 0.0022 17.8 0.1 0.0048 16.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|385806409|ref|YP_005842807.1| - 0.0077 16.7 0.0 0.017 15.6 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_14 PF13173.6 gi|385806409|ref|YP_005842807.1| - 0.011 15.7 0.1 0.02 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|385806409|ref|YP_005842807.1| - 0.015 15.1 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_22 PF13401.6 gi|385806409|ref|YP_005842807.1| - 0.026 14.8 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|385806409|ref|YP_005842807.1| - 0.048 14.1 0.0 0.088 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF4174 PF13778.6 gi|385806409|ref|YP_005842807.1| - 0.069 13.6 0.1 0.14 12.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4174) DUF2075 PF09848.9 gi|385806409|ref|YP_005842807.1| - 0.069 12.4 0.0 0.088 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF1571 PF07608.11 gi|385806409|ref|YP_005842807.1| - 0.098 12.1 0.1 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) T2SSE PF00437.20 gi|385806409|ref|YP_005842807.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Radical_SAM PF04055.21 gi|385806410|ref|YP_005842808.1| - 6.1e-16 59.2 0.0 2.5e-14 54.0 0.0 2.7 2 1 1 3 3 3 1 Radical SAM superfamily DEAD PF00270.29 gi|385806411|ref|YP_005842809.1| - 1e-26 93.7 0.0 2e-25 89.6 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|385806411|ref|YP_005842809.1| - 8e-13 48.7 0.1 2.4e-11 44.0 0.1 2.6 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|385806411|ref|YP_005842809.1| - 8.4e-13 48.7 0.0 5.1e-12 46.2 0.0 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|385806411|ref|YP_005842809.1| - 8.6e-10 38.9 0.0 1.6e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|385806411|ref|YP_005842809.1| - 2.8e-09 36.9 0.0 8.4e-09 35.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|385806411|ref|YP_005842809.1| - 1.8e-06 27.5 0.0 0.0026 17.6 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|385806411|ref|YP_005842809.1| - 2.5e-06 27.2 0.0 2.9e-05 23.8 0.0 2.7 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|385806411|ref|YP_005842809.1| - 0.00015 22.0 0.1 0.0053 17.0 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|385806411|ref|YP_005842809.1| - 0.0061 16.8 0.0 0.015 15.5 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus SNF2_N PF00176.23 gi|385806411|ref|YP_005842809.1| - 0.02 13.6 0.0 0.031 13.0 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain ATPase_2 PF01637.18 gi|385806411|ref|YP_005842809.1| - 0.062 13.2 1.8 0.37 10.7 0.0 2.9 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|385806411|ref|YP_005842809.1| - 0.07 12.6 0.0 1.8 8.0 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein HHH_8 PF14716.6 gi|385806411|ref|YP_005842809.1| - 0.078 13.4 0.1 1.1 9.7 0.1 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain IstB_IS21 PF01695.17 gi|385806411|ref|YP_005842809.1| - 0.11 12.2 0.2 6 6.6 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|385806411|ref|YP_005842809.1| - 0.18 12.1 0.1 1 9.6 0.1 2.4 1 1 0 1 1 1 0 AAA domain CsgA PF17334.2 gi|385806411|ref|YP_005842809.1| - 1.7 9.4 4.7 3.1 8.6 0.2 3.2 3 1 0 3 3 3 0 Minor curli fiber component A MCM PF00493.23 gi|385806412|ref|YP_005842810.1| - 9.4e-101 335.6 0.1 1.6e-100 334.8 0.1 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|385806412|ref|YP_005842810.1| - 1.8e-34 118.3 0.1 3.3e-34 117.4 0.1 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|385806412|ref|YP_005842810.1| - 6.7e-29 100.2 0.6 2e-28 98.6 0.6 1.9 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|385806412|ref|YP_005842810.1| - 2.9e-16 59.9 3.0 3.4e-16 59.7 1.6 1.9 2 0 0 2 2 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|385806412|ref|YP_005842810.1| - 1.5e-08 34.3 0.1 6.2e-05 22.5 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|385806412|ref|YP_005842810.1| - 7.1e-08 32.5 0.0 2.1e-07 31.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|385806412|ref|YP_005842810.1| - 2.6e-07 30.6 0.0 5.3e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|385806412|ref|YP_005842810.1| - 7.7e-05 22.5 0.4 0.00061 19.5 0.1 2.5 2 1 0 2 2 2 1 Sigma-54 interaction domain DUF3987 PF13148.6 gi|385806412|ref|YP_005842810.1| - 0.00088 18.4 0.1 0.15 11.0 0.2 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3987) Mnd1 PF03962.15 gi|385806412|ref|YP_005842810.1| - 0.0099 16.2 0.1 0.061 13.6 0.2 2.4 2 0 0 2 2 2 1 Mnd1 HTH domain AAA_16 PF13191.6 gi|385806412|ref|YP_005842810.1| - 0.028 14.8 0.0 0.079 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain Sigma70_r1_1 PF03979.14 gi|385806412|ref|YP_005842810.1| - 0.029 14.4 1.4 0.28 11.3 0.1 3.2 3 0 0 3 3 3 0 Sigma-70 factor, region 1.1 RuvB_N PF05496.12 gi|385806412|ref|YP_005842810.1| - 0.045 13.5 0.4 0.16 11.7 0.4 1.9 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain HAD_2 PF13419.6 gi|385806412|ref|YP_005842810.1| - 0.27 11.3 2.4 0.21 11.7 0.2 2.0 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Sld5 PF05916.11 gi|385806413|ref|YP_005842811.1| - 1.9e-05 25.1 1.0 2.8e-05 24.5 1.0 1.2 1 0 0 1 1 1 1 GINS complex protein Metallophos_2 PF12850.7 gi|385806414|ref|YP_005842812.1| - 5.9e-31 107.9 0.0 6.6e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|385806414|ref|YP_005842812.1| - 5.6e-09 36.8 0.3 1.8e-06 28.6 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Acetyltransf_1 PF00583.25 gi|385806415|ref|YP_005842813.1| - 1.2e-20 73.9 0.3 2.1e-20 73.1 0.2 1.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|385806415|ref|YP_005842813.1| - 2.1e-14 53.7 0.2 4.4e-14 52.7 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|385806415|ref|YP_005842813.1| - 6.9e-13 48.7 0.2 1.2e-12 47.8 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|385806415|ref|YP_005842813.1| - 4.3e-09 36.2 0.1 7.4e-09 35.5 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|385806415|ref|YP_005842813.1| - 2.3e-08 33.8 0.0 1e-07 31.7 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|385806415|ref|YP_005842813.1| - 8.5e-06 26.0 0.2 1.9e-05 24.9 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|385806415|ref|YP_005842813.1| - 6.5e-05 23.6 0.0 9.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|385806415|ref|YP_005842813.1| - 7.2e-05 22.9 0.1 0.00015 21.8 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|385806415|ref|YP_005842813.1| - 0.023 14.3 0.0 0.054 13.1 0.0 1.5 1 1 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_15 PF17013.5 gi|385806415|ref|YP_005842813.1| - 0.028 13.9 0.3 0.032 13.7 0.3 1.3 1 0 0 1 1 1 0 Putative acetyl-transferase Lactamase_B PF00753.27 gi|385806416|ref|YP_005842814.1| - 1.6e-09 38.0 0.3 6e-09 36.2 0.3 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|385806416|ref|YP_005842814.1| - 1.1e-08 34.8 0.7 2.3e-08 33.8 0.7 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|385806416|ref|YP_005842814.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PHP PF02811.19 gi|385806417|ref|YP_005842815.1| - 3.1e-10 40.6 0.0 3.2e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|385806417|ref|YP_005842815.1| - 5.7e-10 38.8 0.0 1.1e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 PHP-associated Importin_rep PF18773.1 gi|385806417|ref|YP_005842815.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Importin 13 repeat Fer4 PF00037.27 gi|385806418|ref|YP_005842816.1| - 3.5e-16 58.3 15.1 5.9e-09 35.4 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|385806418|ref|YP_005842816.1| - 3.8e-13 48.9 14.7 7e-07 29.1 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|385806418|ref|YP_005842816.1| - 2.3e-11 44.1 7.7 9.1e-06 26.2 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|385806418|ref|YP_005842816.1| - 7.1e-10 38.9 24.4 5.6e-07 29.6 14.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|385806418|ref|YP_005842816.1| - 1.5e-09 37.9 8.4 2.1e-09 37.4 8.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|385806418|ref|YP_005842816.1| - 2e-09 37.4 10.3 2.9e-09 36.9 10.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|385806418|ref|YP_005842816.1| - 1.5e-08 35.4 7.7 0.00047 21.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|385806418|ref|YP_005842816.1| - 3e-08 33.3 11.5 0.00051 20.0 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|385806418|ref|YP_005842816.1| - 3.8e-07 30.1 12.4 0.00091 19.6 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|385806418|ref|YP_005842816.1| - 1.9e-06 28.2 5.8 0.002 18.6 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|385806418|ref|YP_005842816.1| - 1.8e-05 25.2 12.9 0.012 16.2 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|385806418|ref|YP_005842816.1| - 2.3e-05 24.8 6.5 0.007 16.9 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|385806418|ref|YP_005842816.1| - 0.00062 20.5 15.6 0.021 15.8 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|385806418|ref|YP_005842816.1| - 0.002 18.2 7.8 0.0031 17.6 1.2 2.1 1 1 1 2 2 2 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|385806418|ref|YP_005842816.1| - 0.0023 18.1 10.9 0.02 15.1 10.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|385806418|ref|YP_005842816.1| - 0.0042 17.9 5.6 0.57 11.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|385806418|ref|YP_005842816.1| - 0.0071 17.1 15.6 0.52 11.1 2.4 3.4 2 2 2 4 4 4 2 4Fe-4S single cluster domain DUF131 PF01998.17 gi|385806419|ref|YP_005842817.1| - 1.6e-14 53.3 13.5 1.6e-14 53.3 13.5 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF2070 PF09843.9 gi|385806419|ref|YP_005842817.1| - 0.17 10.1 7.4 0.2 9.9 7.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Orf78 PF06024.12 gi|385806419|ref|YP_005842817.1| - 0.2 12.0 4.2 8.6 6.7 2.7 2.1 2 0 0 2 2 2 0 Orf78 (ac78) Baculo_11_kDa PF06143.11 gi|385806419|ref|YP_005842817.1| - 0.31 10.6 6.2 5.3 6.7 2.0 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family TssO PF17561.2 gi|385806419|ref|YP_005842817.1| - 0.38 10.9 0.1 0.38 10.9 0.1 1.8 2 0 0 2 2 2 0 Type VI secretion system, TssO DUF1461 PF07314.11 gi|385806419|ref|YP_005842817.1| - 0.46 10.4 4.0 1.1 9.2 4.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1461) Sigma_reg_N PF13800.6 gi|385806419|ref|YP_005842817.1| - 5.2 7.4 8.3 4 7.8 0.5 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4083 PF13314.6 gi|385806419|ref|YP_005842817.1| - 8 6.5 10.6 12 5.9 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF3784 PF12650.7 gi|385806419|ref|YP_005842817.1| - 9.2 6.5 16.5 1 9.6 5.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) FixQ PF05545.11 gi|385806419|ref|YP_005842817.1| - 10 6.2 10.5 0.92 9.5 0.2 2.5 2 1 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DAO_C PF16901.5 gi|385806420|ref|YP_005842818.1| - 0.074 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase TRAM PF01938.20 gi|385806421|ref|YP_005842819.1| - 5.2e-07 29.6 1.3 6.3e-07 29.3 1.3 1.1 1 0 0 1 1 1 1 TRAM domain DUF3016 PF11454.8 gi|385806421|ref|YP_005842819.1| - 0.0035 17.1 0.0 0.0039 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3016) S1 PF00575.23 gi|385806421|ref|YP_005842819.1| - 0.016 15.6 0.7 2.8 8.3 0.2 2.3 2 0 0 2 2 2 0 S1 RNA binding domain CSD2 PF17876.1 gi|385806421|ref|YP_005842819.1| - 0.021 15.0 0.2 0.063 13.5 0.1 1.8 1 1 1 2 2 2 0 Cold shock domain DUF2192 PF09958.9 gi|385806422|ref|YP_005842820.1| - 5.3e-88 294.4 6.2 6.1e-88 294.2 6.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) HEPN-like_int PF18867.1 gi|385806422|ref|YP_005842820.1| - 0.037 13.9 0.2 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 HEPN-like integron domain SHOCT PF09851.9 gi|385806422|ref|YP_005842820.1| - 0.037 13.8 0.6 0.16 11.8 0.6 2.1 1 0 0 1 1 1 0 Short C-terminal domain DUF1707 PF08044.11 gi|385806422|ref|YP_005842820.1| - 0.088 12.9 0.1 0.34 11.0 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) CdiA_C PF18451.1 gi|385806422|ref|YP_005842820.1| - 0.19 12.0 0.8 1.3 9.3 0.1 2.3 2 0 0 2 2 2 0 Contact-dependent growth inhibition CdiA C-terminal domain tRNA-synt_2 PF00152.20 gi|385806425|ref|YP_005842823.1| - 4e-89 298.8 0.1 4.8e-89 298.5 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|385806425|ref|YP_005842823.1| - 8.6e-12 44.9 2.1 1.5e-11 44.1 2.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|385806425|ref|YP_005842823.1| - 0.0042 16.6 0.2 0.25 10.8 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Diphthami_syn_2 PF01902.17 gi|385806426|ref|YP_005842824.1| - 5.4e-47 160.1 0.0 6.6e-47 159.8 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase AdoMet_dc PF02675.15 gi|385806427|ref|YP_005842825.1| - 1.6e-31 108.7 0.0 2e-31 108.4 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase LDcluster4 PF18306.1 gi|385806428|ref|YP_005842826.1| - 4.7e-15 55.5 0.0 5.9e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family DUF4071 PF13281.6 gi|385806431|ref|YP_005842829.1| - 0.024 13.7 0.0 0.024 13.7 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) SIR2 PF02146.17 gi|385806433|ref|YP_005842831.1| - 1.9e-49 168.0 0.0 2.8e-49 167.4 0.0 1.2 1 0 0 1 1 1 1 Sir2 family zf-RING_7 PF02591.15 gi|385806433|ref|YP_005842831.1| - 0.0064 16.6 2.0 0.008 16.3 0.3 2.0 2 0 0 2 2 2 1 C4-type zinc ribbon domain CxC7 PF18866.1 gi|385806433|ref|YP_005842831.1| - 0.012 15.7 0.1 0.027 14.6 0.1 1.6 1 0 0 1 1 1 0 CxC7 like cysteine cluster associated with KDZ transposases HypA PF01155.19 gi|385806433|ref|YP_005842831.1| - 0.083 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2250 PF10007.9 gi|385806433|ref|YP_005842831.1| - 0.11 12.7 0.6 0.19 11.9 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) zinc_ribbon_2 PF13240.6 gi|385806433|ref|YP_005842831.1| - 0.13 12.0 0.9 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HTH_24 PF13412.6 gi|385806435|ref|YP_005842833.1| - 5.5e-07 29.1 0.2 9.8e-07 28.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|385806435|ref|YP_005842833.1| - 1e-05 25.4 0.1 2.3e-05 24.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|385806435|ref|YP_005842833.1| - 2e-05 24.4 0.0 8.7e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|385806435|ref|YP_005842833.1| - 5.2e-05 23.7 0.0 0.00011 22.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|385806435|ref|YP_005842833.1| - 0.0001 22.1 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|385806435|ref|YP_005842833.1| - 0.00024 20.9 0.0 0.00045 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|385806435|ref|YP_005842833.1| - 0.0016 18.4 0.0 0.0044 17.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.6 gi|385806435|ref|YP_005842833.1| - 0.0043 17.2 0.0 0.0089 16.1 0.0 1.5 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_5 PF01022.20 gi|385806435|ref|YP_005842833.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|385806435|ref|YP_005842833.1| - 0.012 15.8 0.0 0.022 14.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.19 gi|385806435|ref|YP_005842833.1| - 0.017 14.7 0.0 0.04 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF4423 PF14394.6 gi|385806435|ref|YP_005842833.1| - 0.02 14.6 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RuvB_C PF05491.13 gi|385806435|ref|YP_005842833.1| - 0.024 14.5 0.3 0.16 11.9 0.0 2.4 3 0 0 3 3 3 0 RuvB C-terminal winged helix domain HTH_Mga PF08280.11 gi|385806435|ref|YP_005842833.1| - 0.025 14.6 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_12 PF08461.10 gi|385806435|ref|YP_005842833.1| - 0.026 14.5 0.0 0.065 13.2 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_36 PF13730.6 gi|385806435|ref|YP_005842833.1| - 0.15 12.1 0.1 0.33 10.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|385806435|ref|YP_005842833.1| - 0.15 12.2 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Cecropin PF00272.19 gi|385806436|ref|YP_005842834.1| - 0.067 12.9 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Cecropin family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Fervidicoccus_fontis_Kam940_uid162201/NC_017461.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Fervidicoccus_fontis_Kam940_uid162201/NC_017461.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Fervidicoccus_fontis_Kam940_uid162201/NC_017461.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Fervidicoccus_fontis_Kam940_uid162201/NC_017461.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:01:27 2019 # [ok]