# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- FAD_binding_3 PF01494.14 gi|218883316|ref|YP_002427698.1| - 0.012 14.6 0.0 0.31 10.0 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.12 gi|218883316|ref|YP_002427698.1| - 0.028 13.5 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Thi4 family AdoMet_dc PF02675.10 gi|218883317|ref|YP_002427699.1| - 5.3e-31 106.6 0.0 6e-31 106.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF4222 PF13973.1 gi|218883318|ref|YP_002427700.1| - 0.057 12.8 0.0 0.092 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4222) Myosin_N PF02736.14 gi|218883318|ref|YP_002427700.1| - 0.38 10.4 1.9 1.9 8.1 0.4 2.0 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain UPF0051 PF01458.12 gi|218883319|ref|YP_002427701.1| - 3e-15 56.2 0.0 3.9e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|218883320|ref|YP_002427702.1| - 3.1e-57 193.6 0.4 3.8e-57 193.3 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|218883321|ref|YP_002427703.1| - 6.8e-20 71.7 0.0 8.8e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883321|ref|YP_002427703.1| - 5.2e-14 52.9 0.1 5.2e-12 46.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218883321|ref|YP_002427703.1| - 8.3e-10 38.2 0.0 1.5e-08 34.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|218883321|ref|YP_002427703.1| - 0.00012 21.5 0.1 0.00024 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|218883321|ref|YP_002427703.1| - 0.00051 19.2 0.0 0.035 13.1 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|218883321|ref|YP_002427703.1| - 0.00054 19.5 0.0 0.22 10.9 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|218883321|ref|YP_002427703.1| - 0.00064 20.0 0.1 0.001 19.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|218883321|ref|YP_002427703.1| - 0.0036 16.5 0.1 0.0054 15.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|218883321|ref|YP_002427703.1| - 0.0046 16.3 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|218883321|ref|YP_002427703.1| - 0.006 15.1 0.0 0.9 7.9 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|218883321|ref|YP_002427703.1| - 0.014 15.5 0.1 0.063 13.4 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|218883321|ref|YP_002427703.1| - 0.023 14.3 0.3 0.74 9.4 0.0 2.5 1 1 2 3 3 3 0 NACHT domain UPF0079 PF02367.12 gi|218883321|ref|YP_002427703.1| - 0.088 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|218883321|ref|YP_002427703.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|218883321|ref|YP_002427703.1| - 0.1 12.5 0.2 0.14 12.1 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|218883321|ref|YP_002427703.1| - 0.12 12.5 0.3 0.39 10.8 0.1 1.8 2 1 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|218883321|ref|YP_002427703.1| - 0.12 11.7 0.1 0.27 10.6 0.1 1.5 2 0 0 2 2 2 0 MutS domain V AA_kinase PF00696.23 gi|218883322|ref|YP_002427704.1| - 3.4e-31 108.6 0.0 3.9e-31 108.4 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family EamA PF00892.15 gi|218883323|ref|YP_002427705.1| - 9.8e-18 64.4 42.9 1.3e-10 41.4 12.2 2.5 2 1 0 2 2 2 2 EamA-like transporter family Amidohydro_1 PF01979.15 gi|218883324|ref|YP_002427706.1| - 9.7e-40 137.2 0.0 1.2e-39 136.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|218883324|ref|YP_002427706.1| - 8.9e-10 38.2 0.0 2.7e-09 36.7 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|218883324|ref|YP_002427706.1| - 2.7e-09 36.7 0.0 1.4e-08 34.4 0.0 2.3 2 1 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|218883324|ref|YP_002427706.1| - 1.7e-07 31.5 0.0 1.4e-06 28.5 0.0 2.3 1 1 1 2 2 2 1 Amidohydrolase Trm112p PF03966.11 gi|218883325|ref|YP_002427707.1| - 1e-06 29.0 0.5 1.5e-06 28.4 0.3 1.4 1 0 0 1 1 1 1 Trm112p-like protein NOB1_Zn_bind PF08772.6 gi|218883325|ref|YP_002427707.1| - 0.058 13.2 0.8 0.085 12.6 0.5 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-UBR PF02207.15 gi|218883325|ref|YP_002427707.1| - 0.099 12.3 0.5 0.13 12.0 0.3 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) DUF164 PF02591.10 gi|218883325|ref|YP_002427707.1| - 0.23 11.2 1.8 11 5.9 0.0 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain Baculo_ME53 PF06061.6 gi|218883325|ref|YP_002427707.1| - 0.34 9.8 2.4 0.35 9.8 1.6 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 DZR PF12773.2 gi|218883325|ref|YP_002427707.1| - 0.52 10.1 3.6 0.91 9.3 2.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon PGM_PMM_I PF02878.11 gi|218883326|ref|YP_002427708.1| - 1.6e-44 150.7 0.0 2.9e-44 149.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|218883326|ref|YP_002427708.1| - 2.6e-21 75.9 0.0 6.7e-21 74.5 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|218883326|ref|YP_002427708.1| - 1.2e-20 73.5 0.0 2.1e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|218883326|ref|YP_002427708.1| - 2.1e-12 46.8 0.1 5.2e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Phytoreo_S7 PF07236.6 gi|218883326|ref|YP_002427708.1| - 0.024 12.9 0.0 0.037 12.3 0.0 1.2 1 0 0 1 1 1 0 Phytoreovirus S7 protein DUF3107 PF11305.3 gi|218883327|ref|YP_002427709.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) Jag_N PF14804.1 gi|218883327|ref|YP_002427709.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Jag N-terminus DUF2229 PF09989.4 gi|218883327|ref|YP_002427709.1| - 0.11 11.8 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) TGS PF02824.16 gi|218883329|ref|YP_002427711.1| - 5.2e-19 67.8 0.0 9.5e-19 67.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|218883329|ref|YP_002427711.1| - 1.1e-15 57.6 0.0 2.1e-15 56.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|218883329|ref|YP_002427711.1| - 4.4e-10 39.0 0.0 5.9e-09 35.3 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|218883329|ref|YP_002427711.1| - 3.8e-07 29.7 0.0 0.17 11.3 0.0 3.5 2 1 1 3 3 3 3 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.8 gi|218883329|ref|YP_002427711.1| - 0.0024 17.6 0.2 0.11 12.3 0.2 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) SRPRB PF09439.5 gi|218883329|ref|YP_002427711.1| - 0.0025 17.0 0.0 0.0049 16.1 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|218883329|ref|YP_002427711.1| - 0.023 14.8 0.0 0.065 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|218883329|ref|YP_002427711.1| - 0.024 13.8 0.0 0.058 12.5 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|218883329|ref|YP_002427711.1| - 0.028 14.8 0.0 0.092 13.2 0.0 1.9 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|218883329|ref|YP_002427711.1| - 0.039 13.7 0.0 0.66 9.7 0.0 2.7 3 0 0 3 3 3 0 Dynamin family AAA_33 PF13671.1 gi|218883329|ref|YP_002427711.1| - 0.048 13.5 0.0 0.15 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|218883329|ref|YP_002427711.1| - 0.063 13.1 0.1 6.4 6.7 0.0 2.5 1 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|218883329|ref|YP_002427711.1| - 0.086 12.7 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain PPV_E1_C PF00519.12 gi|218883329|ref|YP_002427711.1| - 0.18 10.4 0.0 0.3 9.6 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase RNase_HII PF01351.13 gi|218883330|ref|YP_002427712.1| - 3.7e-32 111.5 0.0 4.4e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII DUF2153 PF09921.4 gi|218883331|ref|YP_002427713.1| - 1.3e-40 137.9 2.1 1.4e-40 137.7 1.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Nrap PF03813.9 gi|218883331|ref|YP_002427713.1| - 0.076 10.5 0.3 0.088 10.3 0.2 1.1 1 0 0 1 1 1 0 Nrap protein Tfb2 PF03849.9 gi|218883331|ref|YP_002427713.1| - 0.082 11.5 0.2 0.094 11.3 0.1 1.0 1 0 0 1 1 1 0 Transcription factor Tfb2 RE_AlwI PF09491.5 gi|218883332|ref|YP_002427714.1| - 0.015 13.7 0.0 0.022 13.2 0.0 1.2 1 0 0 1 1 1 0 AlwI restriction endonuclease tRNA_NucTran2_2 PF13735.1 gi|218883333|ref|YP_002427715.1| - 0.0062 16.3 0.1 0.016 14.9 0.0 1.7 2 0 0 2 2 2 1 tRNA nucleotidyltransferase domain 2 putative TIP49 PF06068.8 gi|218883334|ref|YP_002427716.1| - 3.8e-162 539.5 2.2 4.4e-162 539.3 1.5 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|218883334|ref|YP_002427716.1| - 3.9e-12 46.5 3.7 4e-09 36.7 0.1 3.0 4 0 0 4 4 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|218883334|ref|YP_002427716.1| - 7.5e-09 35.8 1.6 0.00057 19.9 0.0 2.9 2 1 0 3 3 3 2 AAA ATPase domain RuvB_N PF05496.7 gi|218883334|ref|YP_002427716.1| - 3.5e-08 32.7 4.1 1.4e-06 27.5 0.0 3.3 3 1 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|218883334|ref|YP_002427716.1| - 6.5e-07 29.5 0.1 0.0036 17.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|218883334|ref|YP_002427716.1| - 1e-06 29.1 0.0 2.8e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|218883334|ref|YP_002427716.1| - 1.7e-05 25.6 0.5 8.1e-05 23.4 0.0 2.3 3 0 0 3 3 2 1 AAA domain AAA_19 PF13245.1 gi|218883334|ref|YP_002427716.1| - 2.5e-05 23.9 0.0 6.8e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|218883334|ref|YP_002427716.1| - 8.8e-05 21.9 0.2 0.00032 20.1 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|218883334|ref|YP_002427716.1| - 9.2e-05 22.1 0.1 0.00043 20.0 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|218883334|ref|YP_002427716.1| - 0.00052 19.4 0.1 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|218883334|ref|YP_002427716.1| - 0.00065 18.9 0.7 0.0015 17.7 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF2075 PF09848.4 gi|218883334|ref|YP_002427716.1| - 0.0013 17.7 0.0 0.0028 16.6 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.7 gi|218883334|ref|YP_002427716.1| - 0.003 16.6 0.1 0.0065 15.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|218883334|ref|YP_002427716.1| - 0.0036 17.2 0.0 0.0073 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|218883334|ref|YP_002427716.1| - 0.0051 16.4 0.1 0.39 10.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain DBI_PRT PF02277.12 gi|218883334|ref|YP_002427716.1| - 0.006 15.7 1.6 0.0072 15.4 0.3 1.6 2 0 0 2 2 2 1 Phosphoribosyltransferase DnaB_C PF03796.10 gi|218883334|ref|YP_002427716.1| - 0.0099 14.7 0.1 0.032 13.0 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_28 PF13521.1 gi|218883334|ref|YP_002427716.1| - 0.012 15.5 0.2 0.048 13.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|218883334|ref|YP_002427716.1| - 0.019 14.8 0.0 0.84 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|218883334|ref|YP_002427716.1| - 0.019 14.2 0.1 0.042 13.0 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein TFIID-31kDa PF02291.10 gi|218883334|ref|YP_002427716.1| - 0.021 14.6 0.0 0.25 11.1 0.0 2.3 3 0 0 3 3 2 0 Transcription initiation factor IID, 31kD subunit AAA_11 PF13086.1 gi|218883334|ref|YP_002427716.1| - 0.021 14.3 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|218883334|ref|YP_002427716.1| - 0.022 14.2 0.5 0.28 10.6 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain ResIII PF04851.10 gi|218883334|ref|YP_002427716.1| - 0.025 14.4 0.1 0.088 12.6 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|218883334|ref|YP_002427716.1| - 0.029 14.5 0.0 0.06 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.5 gi|218883334|ref|YP_002427716.1| - 0.031 13.4 0.0 0.065 12.4 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SBF2 PF12335.3 gi|218883334|ref|YP_002427716.1| - 0.058 12.7 0.0 0.092 12.0 0.0 1.2 1 0 0 1 1 1 0 Myotubularin protein ABC_tran PF00005.22 gi|218883334|ref|YP_002427716.1| - 0.058 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.12 gi|218883334|ref|YP_002427716.1| - 0.058 12.2 0.2 0.21 10.4 0.0 1.9 1 1 1 2 2 2 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|218883334|ref|YP_002427716.1| - 0.074 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Pyridoxal_deC PF00282.14 gi|218883335|ref|YP_002427717.1| - 3.6e-24 84.9 0.0 1.3e-23 83.1 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|218883335|ref|YP_002427717.1| - 3.2e-14 52.4 0.0 5.1e-12 45.2 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|218883335|ref|YP_002427717.1| - 1.7e-09 37.1 0.0 0.00041 19.4 0.0 2.5 1 1 1 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|218883335|ref|YP_002427717.1| - 2.8e-09 36.5 0.0 8.4e-09 34.9 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|218883335|ref|YP_002427717.1| - 0.0063 15.6 0.0 0.0098 14.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|218883335|ref|YP_002427717.1| - 0.036 12.6 0.1 0.25 9.8 0.0 1.9 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain RIO1 PF01163.17 gi|218883336|ref|YP_002427718.1| - 1.7e-43 148.2 0.0 2.4e-43 147.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|218883336|ref|YP_002427718.1| - 3.6e-20 71.8 0.3 7.9e-20 70.7 0.2 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|218883336|ref|YP_002427718.1| - 8.6e-08 32.2 0.0 3.7e-06 26.8 0.0 2.9 1 1 0 1 1 1 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|218883336|ref|YP_002427718.1| - 0.00036 19.6 0.0 0.00094 18.3 0.0 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|218883336|ref|YP_002427718.1| - 0.001 18.3 0.0 0.0018 17.5 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|218883336|ref|YP_002427718.1| - 0.0013 17.9 0.0 0.003 16.8 0.0 1.6 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) TrmB PF01978.14 gi|218883336|ref|YP_002427718.1| - 0.034 13.8 0.3 0.17 11.6 0.1 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Fructosamin_kin PF03881.9 gi|218883336|ref|YP_002427718.1| - 0.079 11.9 0.0 0.2 10.6 0.0 1.7 2 0 0 2 2 2 0 Fructosamine kinase Choline_kinase PF01633.15 gi|218883336|ref|YP_002427718.1| - 0.13 11.8 0.0 0.56 9.7 0.0 2.0 1 1 0 1 1 1 0 Choline/ethanolamine kinase DUF460 PF04312.8 gi|218883337|ref|YP_002427719.1| - 1.8e-44 150.6 2.7 2.7e-44 150.0 1.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) AAA_13 PF13166.1 gi|218883337|ref|YP_002427719.1| - 0.0067 14.9 7.0 0.01 14.3 4.8 1.2 1 0 0 1 1 1 1 AAA domain MSC PF09402.5 gi|218883337|ref|YP_002427719.1| - 0.083 11.5 1.6 4.4 5.9 0.1 2.4 2 0 0 2 2 2 0 Man1-Src1p-C-terminal domain Vps53_N PF04100.7 gi|218883337|ref|YP_002427719.1| - 0.12 11.1 3.9 0.18 10.5 1.1 2.1 1 1 1 2 2 2 0 Vps53-like, N-terminal ApoC-I PF04691.7 gi|218883337|ref|YP_002427719.1| - 0.15 11.7 0.8 0.39 10.4 0.1 2.1 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) Fib_alpha PF08702.5 gi|218883337|ref|YP_002427719.1| - 0.62 10.1 9.0 0.14 12.3 2.1 2.5 2 1 2 4 4 3 0 Fibrinogen alpha/beta chain family DUF1192 PF06698.6 gi|218883337|ref|YP_002427719.1| - 0.73 9.6 5.4 2.4 8.0 0.2 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1192) Ead_Ea22 PF13935.1 gi|218883337|ref|YP_002427719.1| - 0.91 9.8 6.5 0.38 11.0 2.1 2.0 2 0 0 2 2 2 0 Ead/Ea22-like protein Med9 PF07544.8 gi|218883337|ref|YP_002427719.1| - 0.96 9.2 8.4 1 9.1 3.3 2.7 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 IncA PF04156.9 gi|218883337|ref|YP_002427719.1| - 1.1 8.8 11.8 0.014 15.0 2.7 1.8 2 0 0 2 2 2 0 IncA protein AATF-Che1 PF13339.1 gi|218883337|ref|YP_002427719.1| - 1.2 9.3 5.0 65 3.6 3.3 2.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF641 PF04859.7 gi|218883337|ref|YP_002427719.1| - 1.2 8.9 9.4 0.26 11.0 0.2 2.8 2 1 1 3 3 3 0 Plant protein of unknown function (DUF641) TMF_DNA_bd PF12329.3 gi|218883337|ref|YP_002427719.1| - 1.4 8.7 20.4 0.1 12.4 1.0 3.7 4 0 0 4 4 3 0 TATA element modulatory factor 1 DNA binding NPV_P10 PF05531.7 gi|218883337|ref|YP_002427719.1| - 1.5 9.1 4.4 4.3 7.6 0.0 3.7 5 0 0 5 5 5 0 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|218883337|ref|YP_002427719.1| - 1.9 7.3 6.4 7 5.4 4.5 1.9 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 AdoMet_Synthase PF01941.14 gi|218883338|ref|YP_002427720.1| - 3.3e-167 556.0 1.8 3.7e-167 555.8 1.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) UDPGT PF00201.13 gi|218883338|ref|YP_002427720.1| - 0.13 10.8 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 UDP-glucoronosyl and UDP-glucosyl transferase FbpA PF05833.6 gi|218883339|ref|YP_002427721.1| - 3.3e-40 137.9 6.8 4.3e-40 137.6 4.7 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|218883339|ref|YP_002427721.1| - 3.4e-24 84.5 0.0 8.5e-24 83.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF814) NPV_P10 PF05531.7 gi|218883339|ref|YP_002427721.1| - 0.0073 16.5 0.8 0.12 12.6 0.0 2.4 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.8 gi|218883339|ref|YP_002427721.1| - 0.023 15.4 0.8 0.023 15.4 0.6 3.1 3 0 0 3 3 3 0 Occludin homology domain Herpes_UL14 PF03580.9 gi|218883339|ref|YP_002427721.1| - 0.038 13.7 0.3 0.038 13.7 0.2 1.9 2 0 0 2 2 2 0 Herpesvirus UL14-like protein Baculo_PEP_C PF04513.7 gi|218883339|ref|YP_002427721.1| - 0.074 12.8 1.2 0.39 10.5 0.0 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|218883339|ref|YP_002427721.1| - 0.35 9.4 14.9 0.025 13.2 5.7 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|218883339|ref|YP_002427721.1| - 0.66 9.7 6.7 0.45 10.3 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Nup54 PF13874.1 gi|218883339|ref|YP_002427721.1| - 0.74 9.4 6.6 0.68 9.5 0.3 2.5 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DUF972 PF06156.8 gi|218883339|ref|YP_002427721.1| - 1.6 9.1 5.5 11 6.4 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF972) ATG16 PF08614.6 gi|218883339|ref|YP_002427721.1| - 3.4 7.4 12.8 90 2.8 8.6 2.2 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF4140 PF13600.1 gi|218883339|ref|YP_002427721.1| - 4.3 7.8 5.2 3.7 8.0 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Tropomyosin_1 PF12718.2 gi|218883339|ref|YP_002427721.1| - 4.5 7.0 12.6 0.26 11.1 1.7 2.2 2 0 0 2 2 2 0 Tropomyosin like Laminin_II PF06009.7 gi|218883339|ref|YP_002427721.1| - 7 6.4 8.5 28 4.4 2.8 2.3 1 1 1 2 2 2 0 Laminin Domain II 7TMR-DISM_7TM PF07695.6 gi|218883340|ref|YP_002427722.1| - 0.029 14.0 7.9 0.034 13.8 5.5 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4063 PF13272.1 gi|218883340|ref|YP_002427722.1| - 0.11 12.2 1.0 0.15 11.8 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4063) Tmemb_14 PF03647.8 gi|218883340|ref|YP_002427722.1| - 0.19 12.1 2.7 0.25 11.7 1.9 1.2 1 0 0 1 1 1 0 Transmembrane proteins 14C DUF4199 PF13858.1 gi|218883340|ref|YP_002427722.1| - 1.3 8.9 6.7 1.6 8.6 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) TcpE PF12648.2 gi|218883340|ref|YP_002427722.1| - 1.4 9.1 7.5 1.8 8.7 5.2 1.3 1 0 0 1 1 1 0 TcpE family RNA_Me_trans PF04252.8 gi|218883341|ref|YP_002427723.1| - 2.5e-36 124.9 0.0 3e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Translin PF01997.11 gi|218883342|ref|YP_002427724.1| - 1.3e-37 129.3 0.1 1.9e-37 128.8 0.0 1.2 1 0 0 1 1 1 1 Translin family INT_SG_DDX_CT_C PF15300.1 gi|218883342|ref|YP_002427724.1| - 0.00082 18.7 0.1 0.0019 17.6 0.1 1.6 1 0 0 1 1 1 1 INTS6/SAGE1/DDX26B/CT45 C-terminus HEPN PF05168.9 gi|218883342|ref|YP_002427724.1| - 0.097 12.5 0.7 0.62 9.9 0.0 2.2 2 1 0 2 2 2 0 HEPN domain MarR_2 PF12802.2 gi|218883343|ref|YP_002427725.1| - 5.5e-06 25.9 0.0 1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 MarR family RNA_pol_Rpc34 PF05158.7 gi|218883343|ref|YP_002427725.1| - 2.2e-05 23.7 1.9 0.00073 18.8 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit TrmB PF01978.14 gi|218883343|ref|YP_002427725.1| - 4.3e-05 23.1 0.3 7.2e-05 22.4 0.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|218883343|ref|YP_002427725.1| - 6.4e-05 22.5 0.1 0.00011 21.8 0.1 1.5 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|218883343|ref|YP_002427725.1| - 7.4e-05 22.5 0.2 0.00015 21.5 0.1 1.6 1 1 1 2 2 2 1 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|218883343|ref|YP_002427725.1| - 0.00075 19.5 0.1 0.0015 18.6 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|218883343|ref|YP_002427725.1| - 0.00076 19.7 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|218883343|ref|YP_002427725.1| - 0.0017 17.8 0.1 0.005 16.3 0.1 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|218883343|ref|YP_002427725.1| - 0.0086 15.7 0.5 0.021 14.5 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family z-alpha PF02295.12 gi|218883343|ref|YP_002427725.1| - 0.039 13.7 0.0 0.067 12.9 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain PAX PF00292.13 gi|218883343|ref|YP_002427725.1| - 0.051 13.2 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain RasGAP PF00616.14 gi|218883343|ref|YP_002427725.1| - 0.062 12.9 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase Trans_reg_C PF00486.23 gi|218883343|ref|YP_002427725.1| - 0.065 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal FeoC PF09012.5 gi|218883343|ref|YP_002427725.1| - 0.067 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|218883343|ref|YP_002427725.1| - 0.092 12.4 0.5 0.18 11.4 0.3 1.5 1 0 0 1 1 1 0 HTH domain DUF1495 PF07381.6 gi|218883343|ref|YP_002427725.1| - 0.11 12.2 0.1 0.18 11.4 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Radical_SAM PF04055.16 gi|218883344|ref|YP_002427726.1| - 1.2e-25 90.6 0.1 3.1e-25 89.2 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|218883344|ref|YP_002427726.1| - 1.6e-07 31.2 0.0 4.4e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 B12 binding domain DUF3847 PF12958.2 gi|218883344|ref|YP_002427726.1| - 0.096 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3847) Abhydrolase_6 PF12697.2 gi|218883344|ref|YP_002427726.1| - 0.17 11.7 0.0 0.48 10.2 0.0 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase family TrmB PF01978.14 gi|218883345|ref|YP_002427727.1| - 0.037 13.7 0.1 0.094 12.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|218883345|ref|YP_002427727.1| - 0.067 13.6 0.0 0.077 13.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal YtzH PF14165.1 gi|218883345|ref|YP_002427727.1| - 0.15 12.3 0.3 0.27 11.4 0.2 1.5 1 1 0 1 1 1 0 YtzH-like protein HAD_2 PF13419.1 gi|218883346|ref|YP_002427728.1| - 8.6e-11 42.3 0.0 1.4e-10 41.6 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|218883346|ref|YP_002427728.1| - 6e-05 22.6 0.0 9.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like EF-hand_1 PF00036.27 gi|218883346|ref|YP_002427728.1| - 0.13 11.6 0.1 0.38 10.1 0.1 1.9 1 0 0 1 1 1 0 EF hand TatD_DNase PF01026.16 gi|218883348|ref|YP_002427730.1| - 2.5e-38 131.7 0.0 3.2e-38 131.4 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.19 gi|218883348|ref|YP_002427730.1| - 0.0027 17.0 0.0 0.0041 16.4 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel GerE PF00196.14 gi|218883350|ref|YP_002427732.1| - 5.6e-05 22.3 0.2 0.00027 20.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family IncA PF04156.9 gi|218883350|ref|YP_002427732.1| - 0.00011 21.8 7.0 0.00017 21.2 4.9 1.4 1 0 0 1 1 1 1 IncA protein HTH_38 PF13936.1 gi|218883350|ref|YP_002427732.1| - 0.00019 20.8 0.9 0.00054 19.4 0.0 2.2 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|218883350|ref|YP_002427732.1| - 0.00023 20.5 0.0 0.00053 19.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Macoilin PF09726.4 gi|218883350|ref|YP_002427732.1| - 0.00028 19.3 4.0 0.00031 19.1 2.8 1.1 1 0 0 1 1 1 1 Transmembrane protein HTH_23 PF13384.1 gi|218883350|ref|YP_002427732.1| - 0.00055 19.4 0.0 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain ATG16 PF08614.6 gi|218883350|ref|YP_002427732.1| - 0.00099 18.9 10.1 0.0017 18.2 7.0 1.4 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HTH_40 PF14493.1 gi|218883350|ref|YP_002427732.1| - 0.0011 19.1 2.2 0.0032 17.6 1.4 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain DUF2353 PF09789.4 gi|218883350|ref|YP_002427732.1| - 0.0016 17.7 7.8 0.0022 17.3 5.4 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) ADIP PF11559.3 gi|218883350|ref|YP_002427732.1| - 0.0016 18.3 10.0 0.0038 17.1 6.9 1.6 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding HTH_11 PF08279.7 gi|218883350|ref|YP_002427732.1| - 0.0018 17.8 0.2 0.016 14.8 0.0 2.5 2 0 0 2 2 2 1 HTH domain Atg14 PF10186.4 gi|218883350|ref|YP_002427732.1| - 0.0018 17.2 8.5 0.0023 16.9 5.9 1.2 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 HTH_24 PF13412.1 gi|218883350|ref|YP_002427732.1| - 0.0026 17.1 1.1 0.012 14.9 0.1 2.7 3 0 0 3 3 1 1 Winged helix-turn-helix DNA-binding DUF641 PF04859.7 gi|218883350|ref|YP_002427732.1| - 0.0028 17.4 4.1 0.0046 16.7 2.9 1.5 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) MAD PF05557.8 gi|218883350|ref|YP_002427732.1| - 0.0029 15.7 10.1 0.0036 15.4 7.0 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein KorB PF08535.5 gi|218883350|ref|YP_002427732.1| - 0.004 17.2 2.0 0.04 14.0 0.1 2.5 1 1 1 2 2 2 1 KorB domain DUF4407 PF14362.1 gi|218883350|ref|YP_002427732.1| - 0.0043 16.0 2.4 0.0063 15.5 1.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Tropomyosin PF00261.15 gi|218883350|ref|YP_002427732.1| - 0.0047 16.0 11.8 0.0094 15.0 8.2 1.4 1 0 0 1 1 1 1 Tropomyosin TMF_DNA_bd PF12329.3 gi|218883350|ref|YP_002427732.1| - 0.0047 16.6 14.4 0.0047 16.6 10.0 2.2 3 0 0 3 3 1 1 TATA element modulatory factor 1 DNA binding DUF869 PF05911.6 gi|218883350|ref|YP_002427732.1| - 0.0057 14.9 7.7 0.0064 14.7 5.4 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) CENP-Q PF13094.1 gi|218883350|ref|YP_002427732.1| - 0.0058 16.6 12.1 0.013 15.5 8.4 1.5 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit Mnd1 PF03962.10 gi|218883350|ref|YP_002427732.1| - 0.0062 16.2 7.2 0.0073 15.9 4.3 1.6 2 0 0 2 2 1 1 Mnd1 family HTH_29 PF13551.1 gi|218883350|ref|YP_002427732.1| - 0.0067 16.5 0.1 0.013 15.6 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix Bap31 PF05529.7 gi|218883350|ref|YP_002427732.1| - 0.0092 15.4 5.2 0.014 14.8 3.6 1.4 1 0 0 1 1 1 1 B-cell receptor-associated protein 31-like HTH_DeoR PF08220.7 gi|218883350|ref|YP_002427732.1| - 0.0094 15.4 0.1 0.06 12.8 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain AAA_13 PF13166.1 gi|218883350|ref|YP_002427732.1| - 0.01 14.3 9.3 0.012 14.0 6.5 1.1 1 0 0 1 1 1 0 AAA domain Tropomyosin_1 PF12718.2 gi|218883350|ref|YP_002427732.1| - 0.011 15.5 13.1 0.011 15.5 9.1 1.9 2 0 0 2 2 1 0 Tropomyosin like Spc7 PF08317.6 gi|218883350|ref|YP_002427732.1| - 0.013 14.2 12.0 0.018 13.6 8.3 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein GrpE PF01025.14 gi|218883350|ref|YP_002427732.1| - 0.016 14.7 12.8 0.024 14.1 8.6 1.5 1 1 0 1 1 1 0 GrpE Peptidase_C6 PF00851.13 gi|218883350|ref|YP_002427732.1| - 0.016 13.8 2.2 0.019 13.6 1.5 1.1 1 0 0 1 1 1 0 Helper component proteinase DivIC PF04977.10 gi|218883350|ref|YP_002427732.1| - 0.018 14.5 6.3 0.018 14.5 4.4 2.7 1 1 1 2 2 2 0 Septum formation initiator ApoLp-III PF07464.6 gi|218883350|ref|YP_002427732.1| - 0.019 15.0 9.6 0.019 15.0 6.7 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) HTH_28 PF13518.1 gi|218883350|ref|YP_002427732.1| - 0.019 14.9 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|218883350|ref|YP_002427732.1| - 0.019 14.2 0.0 0.057 12.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|218883350|ref|YP_002427732.1| - 0.02 14.5 0.0 0.057 13.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|218883350|ref|YP_002427732.1| - 0.021 14.6 0.0 0.07 12.9 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Herpes_U30 PF04523.8 gi|218883350|ref|YP_002427732.1| - 0.021 12.3 0.8 0.025 12.0 0.6 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 TMF_TATA_bd PF12325.3 gi|218883350|ref|YP_002427732.1| - 0.021 14.5 13.7 0.1 12.3 9.2 2.2 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|218883350|ref|YP_002427732.1| - 0.022 13.8 9.9 0.027 13.5 6.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Lipoprotein_20 PF13942.1 gi|218883350|ref|YP_002427732.1| - 0.03 13.8 3.6 0.044 13.3 2.5 1.3 1 0 0 1 1 1 0 YfhG lipoprotein DUF342 PF03961.8 gi|218883350|ref|YP_002427732.1| - 0.033 12.5 8.6 0.044 12.1 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Fmp27_WPPW PF10359.4 gi|218883350|ref|YP_002427732.1| - 0.042 12.2 5.6 0.061 11.7 3.9 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF2570 PF10828.3 gi|218883350|ref|YP_002427732.1| - 0.048 13.2 5.5 0.08 12.5 3.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) Mod_r PF07200.8 gi|218883350|ref|YP_002427732.1| - 0.048 13.5 10.4 0.064 13.1 6.0 1.9 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Bacillus_HBL PF05791.6 gi|218883350|ref|YP_002427732.1| - 0.05 12.9 9.7 0.086 12.2 6.7 1.5 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Herpes_UL6 PF01763.11 gi|218883350|ref|YP_002427732.1| - 0.051 11.7 3.4 0.061 11.4 2.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like OmpH PF03938.9 gi|218883350|ref|YP_002427732.1| - 0.061 13.2 5.8 0.08 12.8 4.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Laminin_II PF06009.7 gi|218883350|ref|YP_002427732.1| - 0.077 12.7 4.7 0.16 11.6 3.3 1.6 1 0 0 1 1 1 0 Laminin Domain II Nup54 PF13874.1 gi|218883350|ref|YP_002427732.1| - 0.093 12.3 7.6 0.11 12.1 3.6 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Reo_sigmaC PF04582.7 gi|218883350|ref|YP_002427732.1| - 0.11 11.6 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF1759 PF03564.10 gi|218883350|ref|YP_002427732.1| - 0.11 12.2 6.8 0.14 11.9 4.2 1.6 1 1 1 2 2 1 0 Protein of unknown function (DUF1759) Gln-synt_C PF00120.19 gi|218883350|ref|YP_002427732.1| - 0.12 11.5 0.1 0.19 10.8 0.1 1.4 1 0 0 1 1 1 0 Glutamine synthetase, catalytic domain Peptidase_S46 PF10459.4 gi|218883350|ref|YP_002427732.1| - 0.12 10.8 4.9 0.19 10.1 3.4 1.2 1 0 0 1 1 1 0 Peptidase S46 Fib_alpha PF08702.5 gi|218883350|ref|YP_002427732.1| - 0.12 12.4 8.9 0.089 12.9 0.7 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family TrmB PF01978.14 gi|218883350|ref|YP_002427732.1| - 0.12 12.0 2.7 0.89 9.3 0.0 2.7 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB Baculo_PEP_C PF04513.7 gi|218883350|ref|YP_002427732.1| - 0.13 12.1 7.6 0.14 11.9 4.0 2.0 2 1 0 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4164 PF13747.1 gi|218883350|ref|YP_002427732.1| - 0.13 12.3 12.1 0.17 12.0 6.9 2.2 2 1 0 2 2 1 0 Domain of unknown function (DUF4164) Cep57_MT_bd PF06657.8 gi|218883350|ref|YP_002427732.1| - 0.13 12.1 8.0 0.09 12.7 3.6 2.0 2 0 0 2 2 1 0 Centrosome microtubule-binding domain of Cep57 DUF3552 PF12072.3 gi|218883350|ref|YP_002427732.1| - 0.14 11.3 14.7 0.021 14.0 7.7 1.4 2 0 0 2 2 1 0 Domain of unknown function (DUF3552) TPR_MLP1_2 PF07926.7 gi|218883350|ref|YP_002427732.1| - 0.22 11.2 14.6 0.3 10.8 9.3 1.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein L31 PF09784.4 gi|218883350|ref|YP_002427732.1| - 0.28 11.2 2.0 0.58 10.2 1.4 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L31 Nsp1_C PF05064.8 gi|218883350|ref|YP_002427732.1| - 0.29 10.7 7.5 0.49 10.0 5.2 1.3 1 0 0 1 1 1 0 Nsp1-like C-terminal region GAS PF13851.1 gi|218883350|ref|YP_002427732.1| - 0.3 10.2 18.5 1.2 8.2 12.4 2.0 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding TBPIP PF07106.8 gi|218883350|ref|YP_002427732.1| - 0.31 10.5 14.6 0.033 13.7 7.0 1.7 2 0 0 2 2 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Lebercilin PF15619.1 gi|218883350|ref|YP_002427732.1| - 0.34 10.3 17.3 1.5 8.1 1.8 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease NPV_P10 PF05531.7 gi|218883350|ref|YP_002427732.1| - 0.37 11.0 7.4 3.4 7.9 0.7 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein V_ATPase_I PF01496.14 gi|218883350|ref|YP_002427732.1| - 0.39 8.5 7.4 0.5 8.1 5.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Sipho_Gp157 PF05565.6 gi|218883350|ref|YP_002427732.1| - 0.4 10.2 13.1 0.14 11.7 3.4 2.3 1 1 1 2 2 2 0 Siphovirus Gp157 DUF904 PF06005.7 gi|218883350|ref|YP_002427732.1| - 0.41 10.9 22.9 1.7e+02 2.5 15.9 3.0 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Occludin_ELL PF07303.8 gi|218883350|ref|YP_002427732.1| - 0.44 11.2 8.2 21 5.9 5.5 2.4 2 1 0 2 2 2 0 Occludin homology domain bZIP_2 PF07716.10 gi|218883350|ref|YP_002427732.1| - 0.44 10.3 17.6 1.8 8.4 4.1 2.8 1 1 1 2 2 2 0 Basic region leucine zipper Phage_GP20 PF06810.6 gi|218883350|ref|YP_002427732.1| - 0.58 9.5 14.3 2.6 7.4 9.9 2.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 HSP70 PF00012.15 gi|218883350|ref|YP_002427732.1| - 0.62 7.9 6.8 0.73 7.6 4.7 1.2 1 0 0 1 1 1 0 Hsp70 protein FlaC_arch PF05377.6 gi|218883350|ref|YP_002427732.1| - 0.63 9.9 9.5 3.2 7.7 2.9 3.4 1 1 3 4 4 3 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.7 gi|218883350|ref|YP_002427732.1| - 0.65 9.7 7.1 1.4 8.7 4.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF771 PF05595.6 gi|218883350|ref|YP_002427732.1| - 0.69 9.8 7.5 11 5.9 3.8 2.7 2 2 0 2 2 2 0 Domain of unknown function (DUF771) DUF812 PF05667.6 gi|218883350|ref|YP_002427732.1| - 0.72 8.2 12.9 1 7.7 9.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF812) TMPIT PF07851.8 gi|218883350|ref|YP_002427732.1| - 0.74 8.8 5.1 1.2 8.1 3.5 1.3 1 0 0 1 1 1 0 TMPIT-like protein LCD1 PF09798.4 gi|218883350|ref|YP_002427732.1| - 0.75 7.7 11.6 1 7.2 8.1 1.1 1 0 0 1 1 1 0 DNA damage checkpoint protein RmuC PF02646.11 gi|218883350|ref|YP_002427732.1| - 0.76 8.5 10.4 1.3 7.7 6.9 1.6 1 1 0 1 1 1 0 RmuC family Cauli_AT PF03233.8 gi|218883350|ref|YP_002427732.1| - 0.76 9.4 13.5 0.033 13.9 2.3 2.3 1 1 1 2 2 2 0 Aphid transmission protein Phasin PF05597.6 gi|218883350|ref|YP_002427732.1| - 0.87 9.3 9.1 1.7 8.4 6.1 1.6 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) COG2 PF06148.6 gi|218883350|ref|YP_002427732.1| - 1.2 9.0 11.4 6.9 6.5 5.9 2.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ERM PF00769.14 gi|218883350|ref|YP_002427732.1| - 1.2 8.6 15.3 2.2 7.7 10.6 1.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF4446 PF14584.1 gi|218883350|ref|YP_002427732.1| - 1.2 8.9 7.6 3.5 7.4 5.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) BMFP PF04380.8 gi|218883350|ref|YP_002427732.1| - 1.5 9.0 8.5 0.34 11.0 1.7 2.6 1 1 1 2 2 2 0 Membrane fusogenic activity FliJ PF02050.11 gi|218883350|ref|YP_002427732.1| - 1.5 8.8 15.7 0.14 12.1 4.1 2.7 2 1 1 3 3 2 0 Flagellar FliJ protein CENP-F_leu_zip PF10473.4 gi|218883350|ref|YP_002427732.1| - 1.6 8.6 19.1 1.4 8.7 11.6 2.1 1 1 1 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.3 gi|218883350|ref|YP_002427732.1| - 1.7 7.8 9.2 2 7.6 4.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF948 PF06103.6 gi|218883350|ref|YP_002427732.1| - 1.8 8.4 9.2 4.9 7.0 3.8 2.9 1 1 2 4 4 2 0 Bacterial protein of unknown function (DUF948) Sec2p PF06428.6 gi|218883350|ref|YP_002427732.1| - 2.1 8.2 14.8 18 5.2 10.3 2.2 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p Tbf5 PF06331.7 gi|218883350|ref|YP_002427732.1| - 2.1 8.1 6.5 4.5 7.1 0.5 2.8 1 1 1 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 DUF4337 PF14235.1 gi|218883350|ref|YP_002427732.1| - 2.2 8.1 6.6 2.3 8.0 2.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) DUF1192 PF06698.6 gi|218883350|ref|YP_002427732.1| - 2.4 8.0 12.1 0.37 10.6 0.7 3.1 2 1 1 3 3 2 0 Protein of unknown function (DUF1192) EMP24_GP25L PF01105.19 gi|218883350|ref|YP_002427732.1| - 2.4 7.8 6.2 4.2 7.0 4.3 1.5 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD ORF6C PF10552.4 gi|218883350|ref|YP_002427732.1| - 2.6 7.7 8.9 7.8 6.2 6.1 1.8 1 1 0 1 1 1 0 ORF6C domain UPF0242 PF06785.6 gi|218883350|ref|YP_002427732.1| - 2.8 6.5 9.2 3.6 6.1 6.4 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Seryl_tRNA_N PF02403.17 gi|218883350|ref|YP_002427732.1| - 2.9 7.9 16.8 6.6 6.7 10.5 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Rootletin PF15035.1 gi|218883350|ref|YP_002427732.1| - 3.3 7.6 14.1 6 6.8 9.8 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF4140 PF13600.1 gi|218883350|ref|YP_002427732.1| - 3.5 8.1 10.3 56 4.2 7.2 2.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) SlyX PF04102.7 gi|218883350|ref|YP_002427732.1| - 3.9 7.9 9.7 3.2 8.1 4.0 2.6 1 1 1 2 2 2 0 SlyX FliT PF05400.8 gi|218883350|ref|YP_002427732.1| - 3.9 7.9 10.3 5.1 7.5 3.5 2.2 1 1 1 2 2 2 0 Flagellar protein FliT Pox_A_type_inc PF04508.7 gi|218883350|ref|YP_002427732.1| - 4.2 7.4 17.2 1.5 8.7 1.3 4.6 4 1 1 5 5 4 0 Viral A-type inclusion protein repeat DUF16 PF01519.11 gi|218883350|ref|YP_002427732.1| - 4.6 7.5 12.1 79 3.5 8.4 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 Hemagglutinin PF00509.13 gi|218883350|ref|YP_002427732.1| - 4.8 5.2 8.6 6.4 4.7 6.0 1.1 1 0 0 1 1 1 0 Haemagglutinin PP2C_C PF07830.8 gi|218883350|ref|YP_002427732.1| - 5.1 7.2 7.3 4.5 7.4 3.4 2.1 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF730 PF05325.6 gi|218883350|ref|YP_002427732.1| - 6 6.6 6.5 0.86 9.4 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF730) AAA_23 PF13476.1 gi|218883350|ref|YP_002427732.1| - 6.3 7.0 18.1 15 5.8 12.7 1.5 1 1 0 1 1 1 0 AAA domain Kinetocho_Slk19 PF12709.2 gi|218883350|ref|YP_002427732.1| - 8.3 6.5 14.7 1.6 8.8 2.8 2.8 1 1 1 2 2 2 0 Central kinetochore-associated DUF972 PF06156.8 gi|218883350|ref|YP_002427732.1| - 8.9 6.7 16.8 18 5.7 2.6 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF972) FlxA PF14282.1 gi|218883350|ref|YP_002427732.1| - 9.2 6.2 10.0 11 6.0 6.3 1.6 1 1 0 1 1 1 0 FlxA-like protein Sua5_yciO_yrdC PF01300.13 gi|218883353|ref|YP_002427735.1| - 8e-57 191.3 0.0 1.2e-56 190.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|218883353|ref|YP_002427735.1| - 1.4e-30 105.8 0.0 2.1e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding KaiC PF06745.8 gi|218883354|ref|YP_002427736.1| - 1.5e-57 194.3 0.1 1.7e-57 194.1 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|218883354|ref|YP_002427736.1| - 5.1e-10 39.0 0.0 7.6e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|218883354|ref|YP_002427736.1| - 3.5e-05 23.0 0.1 5e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|218883354|ref|YP_002427736.1| - 0.0002 19.7 0.8 0.0017 16.7 0.5 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|218883354|ref|YP_002427736.1| - 0.0038 16.6 0.0 0.0071 15.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|218883354|ref|YP_002427736.1| - 0.0065 15.3 0.0 0.013 14.4 0.0 1.5 1 0 0 1 1 1 1 Rad51 AAA_19 PF13245.1 gi|218883354|ref|YP_002427736.1| - 0.0072 16.0 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|218883354|ref|YP_002427736.1| - 0.018 13.9 0.0 0.026 13.3 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PAXNEB PF05625.6 gi|218883354|ref|YP_002427736.1| - 0.02 13.7 0.1 0.041 12.7 0.1 1.4 2 0 0 2 2 2 0 PAXNEB protein MEDS PF14417.1 gi|218883354|ref|YP_002427736.1| - 0.026 13.6 0.0 0.033 13.2 0.0 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF2348 PF09807.4 gi|218883354|ref|YP_002427736.1| - 0.043 12.9 0.0 0.07 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2348) AAA_14 PF13173.1 gi|218883354|ref|YP_002427736.1| - 0.055 13.3 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|218883354|ref|YP_002427736.1| - 0.082 12.6 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|218883354|ref|YP_002427736.1| - 0.13 12.3 0.1 0.22 11.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|218883354|ref|YP_002427736.1| - 0.15 11.5 0.1 0.15 11.5 0.1 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF643 PF04867.7 gi|218883354|ref|YP_002427736.1| - 0.23 11.8 2.3 0.31 11.4 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF643) Helicase_RecD PF05127.9 gi|218883355|ref|YP_002427737.1| - 4.4e-54 182.7 0.0 7.6e-54 182.0 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|218883355|ref|YP_002427737.1| - 1.5e-48 164.7 0.0 1.3e-47 161.6 0.0 2.1 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|218883355|ref|YP_002427737.1| - 3e-26 90.9 0.0 2e-25 88.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|218883355|ref|YP_002427737.1| - 1.2e-08 35.0 0.0 4.2e-08 33.2 0.0 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|218883355|ref|YP_002427737.1| - 1.7e-07 31.1 0.1 5.7e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family tRNA_bind_2 PF13725.1 gi|218883355|ref|YP_002427737.1| - 5.5e-06 26.4 0.0 0.00038 20.5 0.0 3.0 3 0 0 3 3 3 1 Possible tRNA binding domain Acetyltransf_10 PF13673.1 gi|218883355|ref|YP_002427737.1| - 0.11 12.6 0.0 0.3 11.2 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA PF00004.24 gi|218883356|ref|YP_002427738.1| - 3.7e-98 324.8 0.0 3.6e-50 169.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|218883356|ref|YP_002427738.1| - 2.1e-27 94.8 0.3 8.7e-27 92.9 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|218883356|ref|YP_002427738.1| - 2.2e-16 59.2 0.1 1.3e-15 56.8 0.0 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|218883356|ref|YP_002427738.1| - 7e-16 57.9 0.0 2.5e-08 33.2 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|218883356|ref|YP_002427738.1| - 1.5e-14 54.4 0.0 1.8e-06 28.1 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|218883356|ref|YP_002427738.1| - 9.1e-14 51.7 0.5 2e-06 27.9 0.0 4.2 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|218883356|ref|YP_002427738.1| - 2.9e-13 50.0 0.0 3e-07 30.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|218883356|ref|YP_002427738.1| - 1.9e-12 46.5 0.1 5e-05 22.1 0.0 2.7 2 1 1 3 3 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|218883356|ref|YP_002427738.1| - 2e-12 47.9 0.2 2.6e-06 28.2 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|218883356|ref|YP_002427738.1| - 2e-12 47.1 0.0 2.4e-05 24.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|218883356|ref|YP_002427738.1| - 2e-12 46.9 1.0 3.7e-06 26.6 0.0 3.8 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|218883356|ref|YP_002427738.1| - 2.1e-10 40.6 0.0 3.3e-05 23.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|218883356|ref|YP_002427738.1| - 3.1e-10 39.4 0.0 7.6e-05 21.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|218883356|ref|YP_002427738.1| - 1.6e-09 37.4 0.0 0.0016 17.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|218883356|ref|YP_002427738.1| - 6e-09 36.0 0.0 0.0013 18.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|218883356|ref|YP_002427738.1| - 1.3e-08 35.1 0.8 0.0014 18.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain Vps4_C PF09336.5 gi|218883356|ref|YP_002427738.1| - 3.7e-08 33.1 0.1 0.00087 19.1 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.17 gi|218883356|ref|YP_002427738.1| - 1.2e-07 31.8 0.0 0.0029 17.7 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|218883356|ref|YP_002427738.1| - 2.6e-07 30.2 10.9 0.097 12.0 0.1 5.3 2 2 1 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|218883356|ref|YP_002427738.1| - 3.2e-07 29.7 1.1 0.014 14.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|218883356|ref|YP_002427738.1| - 5.7e-07 29.2 4.5 0.014 15.1 0.1 3.1 3 0 0 3 3 2 2 Part of AAA domain Arch_ATPase PF01637.13 gi|218883356|ref|YP_002427738.1| - 2.4e-06 27.4 0.6 0.0014 18.3 0.0 3.1 3 1 1 4 4 2 1 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|218883356|ref|YP_002427738.1| - 1.1e-05 25.4 0.0 0.18 11.8 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|218883356|ref|YP_002427738.1| - 1.6e-05 24.1 4.2 0.23 10.5 0.0 4.2 3 2 1 5 5 5 2 KaiC ABC_tran PF00005.22 gi|218883356|ref|YP_002427738.1| - 1.8e-05 25.0 0.0 0.22 11.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|218883356|ref|YP_002427738.1| - 2.5e-05 23.6 0.9 0.14 11.3 0.1 2.9 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|218883356|ref|YP_002427738.1| - 3e-05 23.6 0.0 0.088 12.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|218883356|ref|YP_002427738.1| - 3.1e-05 22.9 0.1 0.037 12.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|218883356|ref|YP_002427738.1| - 3.4e-05 23.3 0.0 0.34 10.3 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|218883356|ref|YP_002427738.1| - 4.8e-05 23.0 2.3 0.27 10.8 0.0 3.8 4 0 0 4 4 4 1 NACHT domain DUF2075 PF09848.4 gi|218883356|ref|YP_002427738.1| - 0.00011 21.2 0.0 0.05 12.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|218883356|ref|YP_002427738.1| - 0.00012 21.7 4.7 0.044 13.3 0.1 2.7 3 0 0 3 3 2 2 AAA domain Bac_DnaA PF00308.13 gi|218883356|ref|YP_002427738.1| - 0.00012 21.8 0.0 0.0099 15.5 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.8 gi|218883356|ref|YP_002427738.1| - 0.00014 20.8 0.0 0.33 9.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) UPF0079 PF02367.12 gi|218883356|ref|YP_002427738.1| - 0.00021 20.9 0.0 0.32 10.6 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|218883356|ref|YP_002427738.1| - 0.00062 18.7 0.0 0.3 9.9 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein SKI PF01202.17 gi|218883356|ref|YP_002427738.1| - 0.00072 19.4 0.0 0.88 9.4 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|218883356|ref|YP_002427738.1| - 0.0017 18.0 0.0 1.2 8.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|218883356|ref|YP_002427738.1| - 0.0019 17.9 3.7 8.2 6.0 0.0 4.4 3 1 1 4 4 4 0 NTPase KAP_NTPase PF07693.9 gi|218883356|ref|YP_002427738.1| - 0.0047 15.9 0.0 1 8.2 0.0 2.9 2 1 1 3 3 3 1 KAP family P-loop domain NB-ARC PF00931.17 gi|218883356|ref|YP_002427738.1| - 0.005 15.7 0.1 1.9 7.2 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_10 PF12846.2 gi|218883356|ref|YP_002427738.1| - 0.0051 16.3 0.6 1.1 8.6 0.1 3.0 2 1 0 2 2 2 1 AAA-like domain ResIII PF04851.10 gi|218883356|ref|YP_002427738.1| - 0.0073 16.1 0.0 4.4 7.0 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|218883356|ref|YP_002427738.1| - 0.01 15.0 0.5 3.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin2 PF13189.1 gi|218883356|ref|YP_002427738.1| - 0.012 15.5 0.0 0.35 10.7 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family KTI12 PF08433.5 gi|218883356|ref|YP_002427738.1| - 0.013 14.6 0.0 3.4 6.8 0.0 2.6 3 0 0 3 3 2 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|218883356|ref|YP_002427738.1| - 0.014 14.9 0.0 5.8 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain Molydop_binding PF01568.16 gi|218883356|ref|YP_002427738.1| - 0.022 14.5 0.1 0.12 12.2 0.0 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain PduV-EutP PF10662.4 gi|218883356|ref|YP_002427738.1| - 0.028 13.9 0.0 5.1 6.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.20 gi|218883356|ref|YP_002427738.1| - 0.03 13.8 0.0 6.9 6.0 0.0 2.5 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|218883356|ref|YP_002427738.1| - 0.044 12.5 0.0 9.7 4.8 0.0 2.8 3 0 0 3 3 3 0 AFG1-like ATPase PEX-2N PF09263.5 gi|218883356|ref|YP_002427738.1| - 0.055 13.7 0.0 9.5 6.6 0.0 2.6 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal Guanylate_kin PF00625.16 gi|218883356|ref|YP_002427738.1| - 0.066 12.6 0.2 23 4.3 0.0 3.6 2 2 2 4 4 4 0 Guanylate kinase AAA_29 PF13555.1 gi|218883356|ref|YP_002427738.1| - 0.11 12.0 0.0 14 5.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.13 gi|218883356|ref|YP_002427738.1| - 0.12 11.8 0.0 3.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|218883356|ref|YP_002427738.1| - 0.18 10.4 0.0 6.1 5.3 0.0 2.3 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein SRPRB PF09439.5 gi|218883356|ref|YP_002427738.1| - 0.22 10.7 0.0 20 4.3 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PIF1 PF05970.9 gi|218883356|ref|YP_002427738.1| - 0.27 10.1 0.0 5.5 5.8 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase AAA_23 PF13476.1 gi|218883356|ref|YP_002427738.1| - 0.3 11.3 0.2 19 5.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|218883356|ref|YP_002427738.1| - 0.37 10.7 1.8 6.8 6.5 0.1 2.9 2 1 1 3 3 3 0 AAA domain KaiC PF06745.8 gi|218883357|ref|YP_002427739.1| - 1.4e-87 292.5 0.1 1.8e-87 292.2 0.1 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|218883357|ref|YP_002427739.1| - 5.4e-12 45.5 0.0 8.2e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|218883357|ref|YP_002427739.1| - 5.8e-05 21.6 0.0 8e-05 21.1 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|218883357|ref|YP_002427739.1| - 0.001 18.0 0.5 0.0072 15.3 0.1 1.9 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|218883357|ref|YP_002427739.1| - 0.0012 18.4 0.3 0.0038 16.9 0.2 1.8 1 0 0 1 1 1 1 Part of AAA domain RecA PF00154.16 gi|218883357|ref|YP_002427739.1| - 0.0013 17.8 0.3 0.11 11.5 0.0 2.7 3 0 0 3 3 3 1 recA bacterial DNA recombination protein AAA_18 PF13238.1 gi|218883357|ref|YP_002427739.1| - 0.0017 18.6 0.0 0.0059 16.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|218883357|ref|YP_002427739.1| - 0.005 15.7 0.0 0.0092 14.8 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.1 gi|218883357|ref|YP_002427739.1| - 0.0084 16.0 0.0 0.015 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|218883357|ref|YP_002427739.1| - 0.0086 14.9 0.0 0.014 14.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|218883357|ref|YP_002427739.1| - 0.0095 16.0 0.1 0.027 14.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|218883357|ref|YP_002427739.1| - 0.014 15.6 0.4 0.027 14.6 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.6 gi|218883357|ref|YP_002427739.1| - 0.019 13.9 0.1 0.13 11.1 0.0 2.0 2 0 0 2 2 2 0 Rad51 AAA_28 PF13521.1 gi|218883357|ref|YP_002427739.1| - 0.033 14.1 0.5 0.092 12.6 0.2 2.0 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|218883357|ref|YP_002427739.1| - 0.035 14.0 0.1 0.1 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|218883357|ref|YP_002427739.1| - 0.042 13.2 0.0 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|218883357|ref|YP_002427739.1| - 0.047 13.2 0.1 4.2 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|218883357|ref|YP_002427739.1| - 0.048 13.3 0.4 0.11 12.2 0.3 1.6 1 1 0 1 1 1 0 NTPase Parvo_NS1 PF01057.12 gi|218883357|ref|YP_002427739.1| - 0.056 12.3 0.0 0.093 11.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PAXNEB PF05625.6 gi|218883357|ref|YP_002427739.1| - 0.06 12.1 0.3 0.37 9.5 0.1 1.9 2 0 0 2 2 2 0 PAXNEB protein AAA_17 PF13207.1 gi|218883357|ref|YP_002427739.1| - 0.072 13.9 0.3 0.16 12.8 0.2 2.0 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|218883357|ref|YP_002427739.1| - 0.079 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Zeta_toxin PF06414.7 gi|218883357|ref|YP_002427739.1| - 0.08 12.0 0.6 0.26 10.3 0.1 2.0 2 0 0 2 2 2 0 Zeta toxin Flavoprotein PF02441.14 gi|218883359|ref|YP_002427741.1| - 4.2e-24 84.6 0.0 7e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein LRV_FeS PF05484.6 gi|218883360|ref|YP_002427742.1| - 0.26 10.9 3.0 1.2 8.7 2.0 2.1 1 1 0 1 1 1 0 LRV protein FeS4 cluster tRNA_int_endo PF01974.12 gi|218883361|ref|YP_002427743.1| - 6.8e-24 83.4 0.0 7.9e-24 83.2 0.0 1.0 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain PhoU_div PF01865.11 gi|218883362|ref|YP_002427744.1| - 8.2e-14 51.2 8.5 1e-13 50.9 5.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|218883362|ref|YP_002427744.1| - 1e-06 29.0 5.1 4.7e-05 23.7 0.3 2.2 2 0 0 2 2 2 2 PhoU domain GAT PF03127.9 gi|218883362|ref|YP_002427744.1| - 0.0011 18.8 5.1 0.13 12.2 0.1 2.4 2 1 0 2 2 2 2 GAT domain His_kinase PF06580.8 gi|218883362|ref|YP_002427744.1| - 0.0056 16.5 1.3 0.056 13.3 0.1 2.7 2 1 0 2 2 2 1 Histidine kinase DUF4559 PF15112.1 gi|218883362|ref|YP_002427744.1| - 0.031 13.4 5.4 0.12 11.4 2.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) UPF0118 PF01594.11 gi|218883362|ref|YP_002427744.1| - 0.044 12.7 0.5 0.067 12.1 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF20 Syntaxin_2 PF14523.1 gi|218883362|ref|YP_002427744.1| - 0.05 13.6 1.3 3.6 7.6 0.8 2.9 2 1 1 3 3 3 0 Syntaxin-like protein DUF615 PF04751.9 gi|218883362|ref|YP_002427744.1| - 0.053 13.1 0.1 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF615) P4Ha_N PF08336.6 gi|218883362|ref|YP_002427744.1| - 0.23 11.3 3.7 0.32 10.8 0.2 2.7 3 0 0 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Allexi_40kDa PF05549.6 gi|218883362|ref|YP_002427744.1| - 0.26 10.5 2.5 0.46 9.7 1.3 1.7 1 1 0 1 1 1 0 Allexivirus 40kDa protein NPV_P10 PF05531.7 gi|218883362|ref|YP_002427744.1| - 0.68 10.2 5.1 11 6.3 2.1 3.1 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF848 PF05852.6 gi|218883362|ref|YP_002427744.1| - 0.99 9.2 4.2 3.1 7.6 0.5 2.7 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) SlyX PF04102.7 gi|218883362|ref|YP_002427744.1| - 1.7 9.1 4.0 2.2 8.6 0.5 2.7 3 0 0 3 3 3 0 SlyX Radical_SAM PF04055.16 gi|218883363|ref|YP_002427745.1| - 1e-15 58.2 1.3 9.2e-15 55.1 0.0 2.9 1 1 2 3 3 3 1 Radical SAM superfamily B12-binding PF02310.14 gi|218883363|ref|YP_002427745.1| - 1e-08 35.0 0.0 2.6e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain ApoB100_C PF12491.3 gi|218883364|ref|YP_002427746.1| - 0.82 9.3 3.3 12 5.6 0.1 3.2 2 2 0 3 3 3 0 Apolipoprotein B100 C terminal Molydop_binding PF01568.16 gi|218883365|ref|YP_002427747.1| - 0.0031 17.3 0.0 0.004 16.9 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Troponin PF00992.15 gi|218883365|ref|YP_002427747.1| - 0.097 12.7 1.7 0.11 12.5 0.8 1.4 1 1 0 1 1 1 0 Troponin tRNA-synt_2b PF00587.20 gi|218883366|ref|YP_002427748.1| - 3.7e-49 166.6 0.0 1.4e-48 164.7 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|218883366|ref|YP_002427748.1| - 1.7e-23 82.3 0.3 4.2e-23 81.1 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain zf-C2H2 PF00096.21 gi|218883366|ref|YP_002427748.1| - 0.079 13.3 1.0 41 4.8 0.0 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|218883366|ref|YP_002427748.1| - 0.2 11.6 0.2 5.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain HMA PF00403.21 gi|218883366|ref|YP_002427748.1| - 0.27 11.4 2.2 1 9.5 0.5 2.3 2 0 0 2 2 2 0 Heavy-metal-associated domain Arginase PF00491.16 gi|218883367|ref|YP_002427749.1| - 2e-62 211.0 0.0 2.5e-62 210.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family PLD_C PF12357.3 gi|218883367|ref|YP_002427749.1| - 0.15 11.6 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D C terminal zinc_ribbon_5 PF13719.1 gi|218883368|ref|YP_002427750.1| - 0.00023 20.6 3.3 0.19 11.3 0.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|218883368|ref|YP_002427750.1| - 0.00025 20.4 7.2 0.0017 17.7 5.0 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|218883368|ref|YP_002427750.1| - 0.00075 19.4 2.2 0.0011 18.8 1.5 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|218883368|ref|YP_002427750.1| - 0.00082 19.0 3.6 0.13 11.9 0.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|218883368|ref|YP_002427750.1| - 0.002 17.8 2.9 0.046 13.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|218883368|ref|YP_002427750.1| - 0.0036 17.1 7.0 0.086 12.7 4.6 2.1 1 1 1 2 2 2 1 Rubredoxin zf-RING_2 PF13639.1 gi|218883368|ref|YP_002427750.1| - 0.0064 16.2 0.2 0.0082 15.9 0.1 1.2 1 0 0 1 1 1 1 Ring finger domain UPF0547 PF10571.4 gi|218883368|ref|YP_002427750.1| - 0.0065 16.1 4.4 0.52 10.0 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|218883368|ref|YP_002427750.1| - 0.009 15.1 5.0 0.12 11.6 3.5 2.0 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|218883368|ref|YP_002427750.1| - 0.0095 15.2 2.5 0.44 9.9 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|218883368|ref|YP_002427750.1| - 0.019 14.6 1.6 0.036 13.7 1.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF4379 PF14311.1 gi|218883368|ref|YP_002427750.1| - 0.029 14.1 0.8 0.036 13.8 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) Rtf2 PF04641.7 gi|218883368|ref|YP_002427750.1| - 0.033 13.3 0.7 0.036 13.2 0.5 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger HypA PF01155.14 gi|218883368|ref|YP_002427750.1| - 0.042 13.5 0.2 0.044 13.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-H2C2_5 PF13909.1 gi|218883368|ref|YP_002427750.1| - 0.043 14.0 1.4 3.7 7.9 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain zf-CHY PF05495.7 gi|218883368|ref|YP_002427750.1| - 0.045 13.9 0.2 0.054 13.6 0.2 1.1 1 0 0 1 1 1 0 CHY zinc finger DZR PF12773.2 gi|218883368|ref|YP_002427750.1| - 0.045 13.5 1.4 0.43 10.4 1.0 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF164 PF02591.10 gi|218883368|ref|YP_002427750.1| - 0.047 13.5 0.7 0.059 13.2 0.5 1.2 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-H2C2_2 PF13465.1 gi|218883368|ref|YP_002427750.1| - 0.05 13.9 3.8 4.6 7.7 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|218883368|ref|YP_002427750.1| - 0.053 13.8 2.5 0.71 10.3 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF3342 PF11822.3 gi|218883368|ref|YP_002427750.1| - 0.059 12.5 0.1 0.059 12.5 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3342) TFIIS_C PF01096.13 gi|218883368|ref|YP_002427750.1| - 0.059 13.0 2.9 4.2 7.0 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Mu-like_Com PF10122.4 gi|218883368|ref|YP_002427750.1| - 0.067 12.2 1.7 5 6.2 0.1 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com DUF329 PF03884.9 gi|218883368|ref|YP_002427750.1| - 0.071 12.6 1.6 0.4 10.2 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Ribosomal_S27e PF01667.12 gi|218883368|ref|YP_002427750.1| - 0.075 12.5 0.5 0.91 9.1 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.1 gi|218883368|ref|YP_002427750.1| - 0.11 11.9 2.9 2.6 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|218883368|ref|YP_002427750.1| - 0.12 11.9 4.4 1.9 8.1 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-C4_Topoisom PF01396.14 gi|218883368|ref|YP_002427750.1| - 0.13 11.7 2.1 0.16 11.5 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-CSL PF05207.8 gi|218883368|ref|YP_002427750.1| - 0.14 11.6 2.8 0.2 11.1 1.9 1.3 1 1 0 1 1 1 0 CSL zinc finger zf-Nse PF11789.3 gi|218883368|ref|YP_002427750.1| - 0.14 11.6 0.8 0.18 11.3 0.6 1.2 1 0 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit zf-C2H2_4 PF13894.1 gi|218883368|ref|YP_002427750.1| - 0.16 12.3 1.1 1.4 9.4 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPCC PF14206.1 gi|218883368|ref|YP_002427750.1| - 0.2 11.2 1.1 11 5.7 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPCC DUF3133 PF11331.3 gi|218883368|ref|YP_002427750.1| - 0.49 9.9 2.2 4.8 6.8 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3133) Zn_Tnp_IS1 PF03811.8 gi|218883368|ref|YP_002427750.1| - 0.53 9.8 3.2 0.91 9.0 0.3 2.0 2 0 0 2 2 2 0 InsA N-terminal domain DUF2225 PF09986.4 gi|218883368|ref|YP_002427750.1| - 0.53 9.6 2.6 3.1 7.2 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-AN1 PF01428.11 gi|218883368|ref|YP_002427750.1| - 0.57 10.0 3.1 10 6.0 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger RNA_POL_M_15KD PF02150.11 gi|218883368|ref|YP_002427750.1| - 1.1 8.9 5.7 5.1 6.8 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.1 gi|218883368|ref|YP_002427750.1| - 2.7 8.0 5.4 5.1 7.2 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2082 PF09855.4 gi|218883368|ref|YP_002427750.1| - 3.6 7.5 5.6 2.1 8.2 0.4 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) SUI1 PF01253.17 gi|218883369|ref|YP_002427751.1| - 5e-23 80.7 0.4 5.9e-23 80.4 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 TFIIB PF00382.14 gi|218883370|ref|YP_002427752.1| - 3.8e-41 138.7 1.1 4.8e-22 77.5 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|218883370|ref|YP_002427752.1| - 1.8e-13 49.5 0.4 3.1e-13 48.7 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|218883370|ref|YP_002427752.1| - 1.2e-06 28.4 0.0 0.04 13.8 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.11 gi|218883370|ref|YP_002427752.1| - 0.00013 21.1 2.8 0.0011 18.2 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|218883370|ref|YP_002427752.1| - 0.0031 16.6 0.1 0.16 11.1 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Cyclin_N PF00134.18 gi|218883370|ref|YP_002427752.1| - 0.012 15.1 0.0 1.2 8.7 0.1 2.7 1 1 2 3 3 3 0 Cyclin, N-terminal domain Rrf2 PF02082.15 gi|218883370|ref|YP_002427752.1| - 0.021 14.9 0.4 9 6.4 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|218883370|ref|YP_002427752.1| - 0.026 14.0 0.0 0.088 12.3 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF188 PF02639.9 gi|218883370|ref|YP_002427752.1| - 0.031 13.7 0.0 0.067 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 Sigma70_r4_2 PF08281.7 gi|218883370|ref|YP_002427752.1| - 0.034 13.6 1.4 0.12 11.8 0.1 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 MRP-L28 PF09812.4 gi|218883370|ref|YP_002427752.1| - 0.09 12.6 0.2 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 A2L_zn_ribbon PF08792.5 gi|218883370|ref|YP_002427752.1| - 0.17 11.3 0.1 0.31 10.5 0.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain CTP_synth_N PF06418.9 gi|218883371|ref|YP_002427753.1| - 6.7e-125 415.7 0.0 9.2e-125 415.2 0.0 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|218883371|ref|YP_002427753.1| - 4.7e-39 133.8 0.0 7e-39 133.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|218883371|ref|YP_002427753.1| - 1.3e-13 50.9 0.0 2.1e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|218883371|ref|YP_002427753.1| - 6.1e-06 25.7 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|218883371|ref|YP_002427753.1| - 0.036 13.6 0.0 0.079 12.5 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF1884 PF08967.5 gi|218883371|ref|YP_002427753.1| - 0.11 12.5 0.1 3.7 7.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1884) ArsA_ATPase PF02374.10 gi|218883371|ref|YP_002427753.1| - 0.14 11.1 0.3 0.41 9.6 0.1 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase Pribosyltran PF00156.22 gi|218883372|ref|YP_002427754.1| - 6.5e-21 74.3 0.1 8.5e-21 73.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|218883372|ref|YP_002427754.1| - 0.004 16.3 0.0 0.0047 16.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.1 gi|218883372|ref|YP_002427754.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain tRNA_SAD PF07973.9 gi|218883373|ref|YP_002427755.1| - 1.4e-12 47.2 0.1 3.2e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|218883373|ref|YP_002427755.1| - 7.8e-08 31.0 0.0 1.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) HEPN PF05168.9 gi|218883375|ref|YP_002427757.1| - 0.13 12.1 0.5 0.2 11.5 0.3 1.3 1 0 0 1 1 1 0 HEPN domain PhoU PF01895.14 gi|218883377|ref|YP_002427759.1| - 2.9e-10 40.4 9.3 4e-05 23.9 1.6 2.2 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|218883377|ref|YP_002427759.1| - 9.3e-05 21.6 3.1 0.00078 18.6 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function DUF47 MerR-DNA-bind PF09278.6 gi|218883377|ref|YP_002427759.1| - 0.17 12.2 1.1 14 6.1 0.0 2.7 2 0 0 2 2 2 0 MerR, DNA binding ABC_tran PF00005.22 gi|218883378|ref|YP_002427760.1| - 1.3e-32 112.9 0.0 1.6e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883378|ref|YP_002427760.1| - 1.5e-16 61.2 0.0 9e-10 38.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|218883378|ref|YP_002427760.1| - 1.6e-07 30.7 0.1 0.00045 19.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|218883378|ref|YP_002427760.1| - 6.2e-06 25.5 2.7 0.00044 19.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|218883378|ref|YP_002427760.1| - 0.00031 20.9 0.0 0.0013 18.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|218883378|ref|YP_002427760.1| - 0.0004 19.5 0.1 0.00069 18.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|218883378|ref|YP_002427760.1| - 0.00042 19.7 0.0 0.001 18.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|218883378|ref|YP_002427760.1| - 0.0013 18.7 0.0 0.0022 17.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|218883378|ref|YP_002427760.1| - 0.0029 17.9 0.0 0.026 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|218883378|ref|YP_002427760.1| - 0.0037 16.9 0.0 0.0062 16.2 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase Adeno_IVa2 PF02456.10 gi|218883378|ref|YP_002427760.1| - 0.0048 15.6 0.0 0.017 13.7 0.0 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_23 PF13476.1 gi|218883378|ref|YP_002427760.1| - 0.0061 16.9 1.0 0.026 14.8 0.2 2.0 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|218883378|ref|YP_002427760.1| - 0.013 14.4 0.1 0.022 13.6 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|218883378|ref|YP_002427760.1| - 0.016 15.9 0.2 0.034 14.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|218883378|ref|YP_002427760.1| - 0.018 14.7 0.0 0.038 13.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|218883378|ref|YP_002427760.1| - 0.028 13.9 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|218883378|ref|YP_002427760.1| - 0.03 13.8 0.0 0.064 12.7 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|218883378|ref|YP_002427760.1| - 0.03 13.7 0.0 0.045 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|218883378|ref|YP_002427760.1| - 0.031 14.0 0.0 0.13 11.9 0.0 2.2 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|218883378|ref|YP_002427760.1| - 0.049 13.2 0.0 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|218883378|ref|YP_002427760.1| - 0.059 11.8 0.0 0.1 11.0 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein MutS_V PF00488.16 gi|218883378|ref|YP_002427760.1| - 0.06 12.7 0.1 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|218883378|ref|YP_002427760.1| - 0.074 12.9 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|218883378|ref|YP_002427760.1| - 0.077 12.4 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.17 gi|218883378|ref|YP_002427760.1| - 0.081 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|218883378|ref|YP_002427760.1| - 0.083 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|218883378|ref|YP_002427760.1| - 0.088 12.1 0.1 0.5 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|218883378|ref|YP_002427760.1| - 0.093 12.6 0.0 0.92 9.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|218883378|ref|YP_002427760.1| - 0.099 12.5 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|218883378|ref|YP_002427760.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) oligo_HPY PF08352.7 gi|218883378|ref|YP_002427760.1| - 0.11 12.9 0.0 0.19 12.1 0.0 1.5 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region AAA_13 PF13166.1 gi|218883378|ref|YP_002427760.1| - 0.13 10.6 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|218883379|ref|YP_002427761.1| - 4.4e-13 49.1 16.1 4.4e-13 49.1 11.1 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|218883380|ref|YP_002427762.1| - 2.2e-09 37.0 14.4 3.9e-09 36.2 10.0 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|218883382|ref|YP_002427764.1| - 4.3e-51 174.0 0.0 5.5e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|218883382|ref|YP_002427764.1| - 1.1e-09 38.4 0.0 1.5e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|218883382|ref|YP_002427764.1| - 6.6e-05 21.9 0.0 0.00031 19.7 0.0 1.9 1 1 0 1 1 1 1 PBP superfamily domain PhoU PF01895.14 gi|218883383|ref|YP_002427765.1| - 0.0001 22.6 1.9 0.0001 22.6 1.3 2.4 2 0 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|218883383|ref|YP_002427765.1| - 0.00019 21.0 0.0 0.00069 19.2 0.0 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE FeoB_N PF02421.13 gi|218883384|ref|YP_002427766.1| - 4.3e-47 159.2 0.6 7.4e-47 158.5 0.1 1.6 2 0 0 2 2 2 1 Ferrous iron transport protein B Gate PF07670.9 gi|218883384|ref|YP_002427766.1| - 8e-24 83.6 20.1 9.3e-19 67.3 5.1 3.8 4 0 0 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|218883384|ref|YP_002427766.1| - 1.6e-16 60.3 0.2 4.8e-16 58.7 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|218883384|ref|YP_002427766.1| - 3.5e-05 23.1 0.7 3.5e-05 23.1 0.5 3.4 4 0 0 4 4 3 1 Ferrous iron transport protein B C terminus Miro PF08477.8 gi|218883384|ref|YP_002427766.1| - 0.00081 19.8 0.0 0.0019 18.6 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|218883384|ref|YP_002427766.1| - 0.0021 17.4 0.0 0.0039 16.5 0.0 1.4 1 0 0 1 1 1 1 Ras family SRPRB PF09439.5 gi|218883384|ref|YP_002427766.1| - 0.0035 16.5 0.1 0.006 15.8 0.1 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|218883384|ref|YP_002427766.1| - 0.017 14.5 0.2 0.18 11.2 0.2 2.2 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|218883384|ref|YP_002427766.1| - 0.051 12.7 0.0 0.091 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|218883384|ref|YP_002427766.1| - 0.057 12.8 0.1 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Peripla_BP_2 PF01497.13 gi|218883384|ref|YP_002427766.1| - 0.15 11.2 0.0 0.55 9.3 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein FeoA PF04023.9 gi|218883385|ref|YP_002427767.1| - 4.9e-17 61.6 0.2 5.4e-17 61.5 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Zip PF02535.17 gi|218883387|ref|YP_002427769.1| - 1.1e-14 54.2 12.4 1.1e-14 54.2 8.6 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter Lip_prot_lig_C PF10437.4 gi|218883388|ref|YP_002427770.1| - 1.3e-06 27.9 0.2 1.6e-06 27.7 0.1 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus LRR_4 PF12799.2 gi|218883388|ref|YP_002427770.1| - 0.026 14.1 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 Leucine Rich repeats (2 copies) BPL_LplA_LipB PF03099.14 gi|218883389|ref|YP_002427771.1| - 2.6e-21 75.9 0.0 3.9e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.16 gi|218883390|ref|YP_002427772.1| - 5.9e-10 39.5 3.1 1.6e-09 38.1 0.7 2.5 2 1 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|218883391|ref|YP_002427773.1| - 6.5e-06 26.4 0.0 1.3e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Peptidase_S24 PF00717.18 gi|218883394|ref|YP_002427776.1| - 0.0067 16.0 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like MpPF26 PF07666.6 gi|218883395|ref|YP_002427777.1| - 0.087 12.7 3.4 9.4 6.1 0.0 2.3 2 0 0 2 2 2 0 M penetrans paralogue family 26 Tetraspannin PF00335.15 gi|218883395|ref|YP_002427777.1| - 1.2 8.3 4.7 8.1 5.6 3.3 2.0 1 1 1 2 2 2 0 Tetraspanin family Tox-HNH-HHH PF15637.1 gi|218883398|ref|YP_002427780.1| - 0.008 15.9 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 HNH/Endo VII superfamily nuclease toxin with a HHH motif Anthrax-tox_M PF09156.5 gi|218883399|ref|YP_002427781.1| - 0.039 13.0 0.1 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 Anthrax toxin lethal factor, middle domain HTH_23 PF13384.1 gi|218883402|ref|YP_002427784.1| - 0.078 12.6 0.3 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain PAS_10 PF13596.1 gi|218883403|ref|YP_002427785.1| - 1.2e-15 57.7 0.0 1.4e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|218883403|ref|YP_002427785.1| - 5.2e-05 23.5 0.0 6.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|218883403|ref|YP_002427785.1| - 0.0046 16.9 0.0 0.0053 16.7 0.0 1.2 1 0 0 1 1 1 1 PAS fold DUF2111 PF09884.4 gi|218883403|ref|YP_002427785.1| - 0.057 13.2 0.0 0.09 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) Herpes_U15 PF05613.6 gi|218883406|ref|YP_002427788.1| - 0.14 12.4 0.2 0.16 12.3 0.1 1.1 1 0 0 1 1 1 0 Human herpesvirus U15 protein LSM PF01423.17 gi|218883408|ref|YP_002427790.1| - 1.3e-15 56.6 0.0 1.6e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|218883408|ref|YP_002427790.1| - 0.00015 21.6 0.1 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain LSM14 PF12701.2 gi|218883408|ref|YP_002427790.1| - 0.0076 16.0 0.0 0.0099 15.6 0.0 1.2 1 0 0 1 1 1 1 Scd6-like Sm domain Methyltransf_11 PF08241.7 gi|218883409|ref|YP_002427791.1| - 1.2e-19 70.6 0.0 1.7e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218883409|ref|YP_002427791.1| - 1.9e-12 46.9 0.0 2.6e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|218883409|ref|YP_002427791.1| - 3.1e-11 43.6 0.0 5.1e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|218883409|ref|YP_002427791.1| - 4.8e-11 42.6 0.0 5.8e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|218883409|ref|YP_002427791.1| - 7.6e-09 35.8 0.0 1.2e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|218883409|ref|YP_002427791.1| - 8e-08 31.6 0.0 9.8e-08 31.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|218883409|ref|YP_002427791.1| - 9e-08 32.6 0.0 1.2e-07 32.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|218883409|ref|YP_002427791.1| - 0.0012 18.2 0.1 0.0028 17.0 0.1 1.6 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|218883409|ref|YP_002427791.1| - 0.0043 17.0 0.0 0.0072 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|218883409|ref|YP_002427791.1| - 0.024 14.2 0.1 0.093 12.3 0.0 1.7 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.9 gi|218883409|ref|YP_002427791.1| - 0.087 12.1 0.1 0.17 11.2 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase small domain DUF91 PF01939.11 gi|218883410|ref|YP_002427792.1| - 1.9e-12 46.8 0.0 2e-12 46.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 Mrr_cat PF04471.7 gi|218883410|ref|YP_002427792.1| - 0.1 12.4 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease Glycos_transf_1 PF00534.15 gi|218883411|ref|YP_002427793.1| - 7.6e-26 90.5 0.0 1.1e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|218883411|ref|YP_002427793.1| - 2e-09 37.7 0.0 4.8e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|218883411|ref|YP_002427793.1| - 2.6e-08 34.0 0.0 9.5e-08 32.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|218883411|ref|YP_002427793.1| - 0.093 12.8 0.3 0.97 9.5 0.0 2.6 3 0 0 3 3 3 0 Glycosyl transferase 4-like domain Nodulin-like PF06813.8 gi|218883412|ref|YP_002427794.1| - 0.0058 15.9 1.2 0.007 15.6 0.8 1.1 1 0 0 1 1 1 1 Nodulin-like MFS_1 PF07690.11 gi|218883412|ref|YP_002427794.1| - 0.019 13.7 5.0 0.021 13.5 3.4 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily Peptidase_A22B PF04258.8 gi|218883412|ref|YP_002427794.1| - 0.18 11.1 1.4 0.22 10.9 1.0 1.0 1 0 0 1 1 1 0 Signal peptide peptidase DHODB_Fe-S_bind PF10418.4 gi|218883413|ref|YP_002427795.1| - 2e-11 43.1 0.8 3.4e-11 42.4 0.6 1.4 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_3 PF13085.1 gi|218883413|ref|YP_002427795.1| - 0.025 14.3 0.4 0.057 13.2 0.3 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_20 PF14691.1 gi|218883414|ref|YP_002427796.1| - 3.5e-33 113.5 0.0 5.3e-33 112.9 0.0 1.2 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|218883414|ref|YP_002427796.1| - 2.5e-24 86.2 0.2 2.2e-09 37.5 0.0 3.5 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|218883414|ref|YP_002427796.1| - 3.1e-13 49.9 2.7 1.9e-06 28.1 0.0 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|218883414|ref|YP_002427796.1| - 1.3e-12 48.2 0.0 5.7e-05 23.2 0.0 2.9 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|218883414|ref|YP_002427796.1| - 5.1e-08 32.8 0.4 2.7e-07 30.5 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|218883414|ref|YP_002427796.1| - 1.2e-06 27.6 1.3 0.0022 16.9 0.6 3.7 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|218883414|ref|YP_002427796.1| - 2.5e-05 23.5 0.4 0.00061 18.9 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|218883414|ref|YP_002427796.1| - 6.1e-05 22.6 0.3 0.24 10.9 0.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.19 gi|218883414|ref|YP_002427796.1| - 7.3e-05 22.0 0.6 0.29 10.1 0.1 2.7 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase CPSase_L_chain PF00289.17 gi|218883414|ref|YP_002427796.1| - 0.00021 21.3 0.0 0.024 14.7 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_2 PF00890.19 gi|218883414|ref|YP_002427796.1| - 0.00025 20.0 0.7 0.0012 17.7 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.15 gi|218883414|ref|YP_002427796.1| - 0.0006 19.9 0.3 0.014 15.5 0.0 2.7 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|218883414|ref|YP_002427796.1| - 0.00088 17.8 0.3 0.0046 15.4 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|218883414|ref|YP_002427796.1| - 0.0029 16.7 1.6 0.0031 16.6 0.1 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|218883414|ref|YP_002427796.1| - 0.0044 17.2 0.3 0.06 13.6 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding DJ-1_PfpI PF01965.19 gi|218883414|ref|YP_002427796.1| - 0.04 13.3 0.1 2.3 7.6 0.0 2.8 2 1 1 3 3 3 0 DJ-1/PfpI family GIDA PF01134.17 gi|218883414|ref|YP_002427796.1| - 0.055 12.3 0.0 1.1 8.0 0.0 2.6 3 0 0 3 3 3 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.14 gi|218883414|ref|YP_002427796.1| - 0.056 12.5 0.1 2.8 7.0 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|218883414|ref|YP_002427796.1| - 0.081 11.9 1.6 0.73 8.8 0.1 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|218883414|ref|YP_002427796.1| - 0.22 11.1 0.4 1.1 8.9 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NTPase_I-T PF01931.13 gi|218883415|ref|YP_002427797.1| - 8.6e-31 106.9 0.0 9.7e-31 106.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 POR PF01558.13 gi|218883416|ref|YP_002427798.1| - 1.9e-07 31.1 0.1 2.1e-07 31.0 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR PF01558.13 gi|218883417|ref|YP_002427799.1| - 2.3e-13 50.4 0.1 2.7e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF91 PF01939.11 gi|218883418|ref|YP_002427800.1| - 5e-20 71.6 0.0 6.1e-20 71.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 Fer4_21 PF14697.1 gi|218883418|ref|YP_002427800.1| - 3.8e-08 33.0 7.7 4.6e-06 26.4 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|218883418|ref|YP_002427800.1| - 5.5e-08 32.0 3.7 5.5e-08 32.0 2.6 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|218883418|ref|YP_002427800.1| - 2e-07 30.5 9.1 3.4e-05 23.5 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218883418|ref|YP_002427800.1| - 4.6e-07 29.5 17.6 0.0002 21.1 6.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218883418|ref|YP_002427800.1| - 1.2e-05 25.5 8.6 2.3e-05 24.5 5.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|218883418|ref|YP_002427800.1| - 2.7e-05 24.4 9.8 7.4e-05 23.0 6.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218883418|ref|YP_002427800.1| - 2.8e-05 24.0 11.1 0.001 19.2 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|218883418|ref|YP_002427800.1| - 4.1e-05 23.2 13.4 0.00026 20.7 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|218883418|ref|YP_002427800.1| - 0.00042 20.9 7.5 0.014 16.1 1.1 2.4 1 1 2 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|218883418|ref|YP_002427800.1| - 0.0034 17.3 7.5 0.0097 15.9 5.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|218883418|ref|YP_002427800.1| - 0.02 15.2 1.3 0.02 15.2 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218883418|ref|YP_002427800.1| - 0.036 14.6 4.0 0.036 14.6 2.7 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218883418|ref|YP_002427800.1| - 0.11 12.9 11.5 3.4 8.1 8.0 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|218883418|ref|YP_002427800.1| - 0.11 12.8 8.0 0.34 11.3 1.8 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|218883418|ref|YP_002427800.1| - 0.61 10.6 9.9 0.41 11.2 2.4 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Spc24 PF08286.6 gi|218883419|ref|YP_002427801.1| - 0.027 14.1 0.3 0.057 13.1 0.2 1.6 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Phasin PF05597.6 gi|218883419|ref|YP_002427801.1| - 0.029 14.1 1.4 0.058 13.1 1.0 1.5 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) FlaC_arch PF05377.6 gi|218883419|ref|YP_002427801.1| - 0.34 10.8 3.7 0.49 10.3 1.0 2.4 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) LcrG PF07216.7 gi|218883419|ref|YP_002427801.1| - 0.34 10.9 3.0 2 8.5 0.1 2.4 1 1 1 2 2 2 0 LcrG protein DUF1664 PF07889.7 gi|218883419|ref|YP_002427801.1| - 0.5 10.1 3.8 0.12 12.1 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Lactamase_B PF00753.22 gi|218883420|ref|YP_002427802.1| - 2.7e-08 33.7 0.0 4.9e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|218883420|ref|YP_002427802.1| - 1.2e-07 31.5 0.0 3.7e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|218883420|ref|YP_002427802.1| - 0.04 13.9 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase RMMBL PF07521.7 gi|218883420|ref|YP_002427802.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 RNA-metabolising metallo-beta-lactamase Glycos_transf_1 PF00534.15 gi|218883421|ref|YP_002427803.1| - 3.9e-27 94.7 0.2 8.3e-27 93.6 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|218883421|ref|YP_002427803.1| - 4.5e-09 36.5 0.0 9.2e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|218883421|ref|YP_002427803.1| - 6.5e-07 29.2 0.0 2e-06 27.6 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|218883421|ref|YP_002427803.1| - 0.0024 18.0 0.0 0.0055 16.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 CbiQ PF02361.11 gi|218883422|ref|YP_002427804.1| - 1.9e-11 43.9 6.9 1.9e-11 43.9 4.8 1.3 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.22 gi|218883423|ref|YP_002427805.1| - 4.4e-40 137.1 0.0 7.1e-19 68.4 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|218883423|ref|YP_002427805.1| - 3.3e-30 106.0 10.7 4.9e-12 46.4 0.1 4.2 2 2 1 3 3 3 3 AAA domain SMC_N PF02463.14 gi|218883423|ref|YP_002427805.1| - 4.2e-15 55.5 1.1 0.00072 18.8 0.0 4.1 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|218883423|ref|YP_002427805.1| - 9.5e-13 47.9 0.8 0.00037 19.6 0.0 3.6 4 0 0 4 4 4 3 AAA ATPase domain AAA_29 PF13555.1 gi|218883423|ref|YP_002427805.1| - 1.2e-09 37.5 0.8 0.00013 21.3 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|218883423|ref|YP_002427805.1| - 4.5e-09 35.9 0.0 0.0011 18.4 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|218883423|ref|YP_002427805.1| - 4.5e-07 30.3 0.3 0.0046 17.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|218883423|ref|YP_002427805.1| - 2e-06 27.9 2.0 0.011 15.8 0.0 3.3 3 1 0 3 3 3 2 AAA domain AAA_33 PF13671.1 gi|218883423|ref|YP_002427805.1| - 2.1e-06 27.6 0.2 0.00062 19.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|218883423|ref|YP_002427805.1| - 2.3e-06 27.3 0.6 0.031 13.7 0.1 3.0 3 0 0 3 3 3 2 AAA-like domain AAA_16 PF13191.1 gi|218883423|ref|YP_002427805.1| - 2.9e-06 27.3 0.3 0.015 15.2 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|218883423|ref|YP_002427805.1| - 2.6e-05 23.7 0.4 0.69 9.2 0.0 3.4 4 0 0 4 4 3 1 IstB-like ATP binding protein NACHT PF05729.7 gi|218883423|ref|YP_002427805.1| - 2.6e-05 23.9 1.9 0.017 14.8 0.0 2.7 3 0 0 3 3 2 2 NACHT domain MobB PF03205.9 gi|218883423|ref|YP_002427805.1| - 6.8e-05 22.6 0.8 0.0072 16.0 0.1 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|218883423|ref|YP_002427805.1| - 7.5e-05 22.3 0.9 0.072 12.5 0.1 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|218883423|ref|YP_002427805.1| - 8.6e-05 22.1 0.0 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|218883423|ref|YP_002427805.1| - 9.4e-05 21.6 0.1 0.0082 15.3 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 T2SE PF00437.15 gi|218883423|ref|YP_002427805.1| - 0.00012 21.0 0.3 0.21 10.4 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_14 PF13173.1 gi|218883423|ref|YP_002427805.1| - 0.00015 21.6 0.6 0.066 13.1 0.0 3.8 3 2 0 3 3 3 1 AAA domain AAA PF00004.24 gi|218883423|ref|YP_002427805.1| - 0.00018 21.7 0.8 0.13 12.4 0.0 3.8 4 1 1 5 5 4 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|218883423|ref|YP_002427805.1| - 0.00039 20.1 0.2 0.39 10.4 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain UPF0079 PF02367.12 gi|218883423|ref|YP_002427805.1| - 0.0004 19.9 0.2 0.044 13.4 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|218883423|ref|YP_002427805.1| - 0.00056 20.7 7.3 0.009 16.8 0.2 3.3 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|218883423|ref|YP_002427805.1| - 0.00083 19.6 0.9 0.25 11.6 0.0 3.4 4 0 0 4 4 3 1 AAA domain Mg_chelatase PF01078.16 gi|218883423|ref|YP_002427805.1| - 0.0015 17.7 0.6 0.27 10.3 0.0 2.6 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI Pox_A32 PF04665.7 gi|218883423|ref|YP_002427805.1| - 0.0019 17.5 0.4 0.29 10.3 0.0 2.4 2 0 0 2 2 2 1 Poxvirus A32 protein SbcCD_C PF13558.1 gi|218883423|ref|YP_002427805.1| - 0.002 18.0 0.0 1.3 8.9 0.0 3.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|218883423|ref|YP_002427805.1| - 0.0022 17.9 0.1 0.022 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|218883423|ref|YP_002427805.1| - 0.0026 17.3 2.2 1 8.9 0.1 2.4 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|218883423|ref|YP_002427805.1| - 0.0029 17.3 0.2 0.34 10.5 0.0 2.4 2 0 0 2 2 2 1 Archaeal ATPase RNA_helicase PF00910.17 gi|218883423|ref|YP_002427805.1| - 0.0036 17.4 0.0 0.54 10.4 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_5 PF07728.9 gi|218883423|ref|YP_002427805.1| - 0.0036 17.0 0.8 0.16 11.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|218883423|ref|YP_002427805.1| - 0.0049 15.9 0.2 0.85 8.6 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin Miro PF08477.8 gi|218883423|ref|YP_002427805.1| - 0.018 15.5 0.1 0.41 11.1 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein NTPase_1 PF03266.10 gi|218883423|ref|YP_002427805.1| - 0.021 14.5 0.8 2.5 7.7 0.1 2.7 2 1 0 2 2 2 0 NTPase ATP_bind_1 PF03029.12 gi|218883423|ref|YP_002427805.1| - 0.025 14.1 1.3 1.7 8.1 0.1 2.6 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein MutS_V PF00488.16 gi|218883423|ref|YP_002427805.1| - 0.025 13.9 0.1 0.58 9.5 0.0 2.3 2 0 0 2 2 2 0 MutS domain V DUF1975 PF09318.5 gi|218883423|ref|YP_002427805.1| - 0.03 13.9 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1975) cobW PF02492.14 gi|218883423|ref|YP_002427805.1| - 0.036 13.4 3.7 0.62 9.4 0.3 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|218883423|ref|YP_002427805.1| - 0.042 13.6 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 1 0 Dynamin family MMR_HSR1 PF01926.18 gi|218883423|ref|YP_002427805.1| - 0.05 13.5 0.5 0.22 11.4 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|218883423|ref|YP_002427805.1| - 0.052 12.3 0.1 0.11 11.2 0.1 1.5 1 0 0 1 1 1 0 ArgK protein KaiC PF06745.8 gi|218883423|ref|YP_002427805.1| - 0.071 12.2 0.4 4 6.5 0.1 2.3 2 0 0 2 2 2 0 KaiC SRP54 PF00448.17 gi|218883423|ref|YP_002427805.1| - 0.092 12.1 1.5 0.27 10.6 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NADH_u_ox_C PF12853.2 gi|218883423|ref|YP_002427805.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit PRK PF00485.13 gi|218883423|ref|YP_002427805.1| - 0.11 12.0 0.0 9.7 5.6 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|218883423|ref|YP_002427805.1| - 0.12 11.1 0.9 0.83 8.4 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain APS_kinase PF01583.15 gi|218883423|ref|YP_002427805.1| - 0.14 11.8 0.0 0.96 9.0 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase SRPRB PF09439.5 gi|218883423|ref|YP_002427805.1| - 0.14 11.3 2.5 30 3.7 0.0 3.4 4 0 0 4 4 3 0 Signal recognition particle receptor beta subunit AAA_13 PF13166.1 gi|218883423|ref|YP_002427805.1| - 0.17 10.3 0.0 4.5 5.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain PGM_PMM_I PF02878.11 gi|218883424|ref|YP_002427806.1| - 2.7e-12 46.3 0.0 1e-11 44.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|218883424|ref|YP_002427806.1| - 7.3e-05 23.0 0.0 0.00017 21.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NTP_transferase PF00483.18 gi|218883425|ref|YP_002427807.1| - 1.3e-36 126.2 0.0 1.8e-36 125.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|218883425|ref|YP_002427807.1| - 2.3e-11 44.0 0.0 3.2e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|218883425|ref|YP_002427807.1| - 3.1e-07 29.5 10.1 3.4e-06 26.3 1.1 4.0 1 1 2 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|218883425|ref|YP_002427807.1| - 6.4e-05 22.4 0.3 0.00015 21.2 0.2 1.7 1 0 0 1 1 1 1 Hexapeptide repeat of succinyl-transferase DNA_pol_B_3 PF08408.5 gi|218883425|ref|YP_002427807.1| - 0.042 13.7 0.7 1.6 8.6 0.0 2.8 3 0 0 3 3 3 0 DNA polymerase family B viral insert IspD PF01128.14 gi|218883425|ref|YP_002427807.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PLDc_2 PF13091.1 gi|218883426|ref|YP_002427808.1| - 4.9e-22 78.0 0.1 6.1e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 PLD-like domain PLDc PF00614.17 gi|218883426|ref|YP_002427808.1| - 1.7e-05 24.4 1.3 9.6e-05 22.0 0.1 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|218883426|ref|YP_002427808.1| - 0.023 13.6 0.3 0.047 12.6 0.1 1.5 1 1 1 2 2 2 0 Archaeal transcriptional regulator TrmB DUF1049 PF06305.6 gi|218883426|ref|YP_002427808.1| - 0.12 11.8 1.5 0.22 11.0 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) DUF1669 PF07894.7 gi|218883426|ref|YP_002427808.1| - 0.14 11.3 0.3 2 7.5 0.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1669) CitMHS PF03600.11 gi|218883427|ref|YP_002427809.1| - 8.4e-23 80.5 35.9 8.4e-23 80.5 24.9 2.0 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|218883427|ref|YP_002427809.1| - 0.001 18.0 19.7 0.001 18.0 13.7 2.7 2 1 0 2 2 2 1 Sodium:sulfate symporter transmembrane region Phage_holin_6 PF10746.4 gi|218883427|ref|YP_002427809.1| - 0.055 13.1 0.5 0.055 13.1 0.3 2.7 3 0 0 3 3 3 0 Phage holin family 6 OrfB_Zn_ribbon PF07282.6 gi|218883428|ref|YP_002427810.1| - 2.5e-19 68.7 0.0 5.4e-19 67.6 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|218883428|ref|YP_002427810.1| - 6.6e-05 22.4 5.5 0.00014 21.2 3.8 1.5 1 1 0 1 1 1 1 Probable transposase Resolvase PF00239.16 gi|218883429|ref|YP_002427811.1| - 8.7e-19 67.7 0.5 1.6e-18 66.9 0.3 1.5 1 1 1 2 2 2 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218883429|ref|YP_002427811.1| - 9.9e-06 25.7 0.0 2.3e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218883429|ref|YP_002427811.1| - 0.021 14.3 0.1 0.088 12.3 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein MerR_1 PF13411.1 gi|218883429|ref|YP_002427811.1| - 0.027 14.2 0.0 0.059 13.1 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|218883429|ref|YP_002427811.1| - 0.032 14.2 0.6 0.077 13.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|218883429|ref|YP_002427811.1| - 0.036 13.7 0.0 0.093 12.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain NTPase_I-T PF01931.13 gi|218883430|ref|YP_002427812.1| - 1e-39 135.9 0.0 1.2e-39 135.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 OTCace_N PF02729.16 gi|218883431|ref|YP_002427813.1| - 7.1e-41 139.1 0.0 1.1e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|218883431|ref|YP_002427813.1| - 5.3e-36 123.8 0.0 1.7e-35 122.2 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OpuAC PF04069.7 gi|218883431|ref|YP_002427813.1| - 0.024 13.9 0.3 0.057 12.7 0.2 1.6 1 1 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system RuvA_C PF07499.8 gi|218883431|ref|YP_002427813.1| - 0.11 12.6 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 RuvA, C-terminal domain Band_7 PF01145.20 gi|218883432|ref|YP_002427814.1| - 0.052 13.4 0.1 0.054 13.3 0.1 1.0 1 0 0 1 1 1 0 SPFH domain / Band 7 family RPAP1_N PF08621.5 gi|218883432|ref|YP_002427814.1| - 0.1 12.1 2.9 1.3 8.6 0.6 2.2 2 0 0 2 2 2 0 RPAP1-like, N-terminal PGM_PMM_I PF02878.11 gi|218883433|ref|YP_002427815.1| - 4.6e-25 87.7 0.0 8.4e-25 86.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|218883433|ref|YP_002427815.1| - 6.1e-18 65.0 0.0 1.3e-17 63.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|218883433|ref|YP_002427815.1| - 3.1e-13 49.5 0.1 7.5e-13 48.2 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|218883433|ref|YP_002427815.1| - 2.2e-05 24.4 0.0 4.6e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Fe-S_assembly PF04384.8 gi|218883435|ref|YP_002427817.1| - 0.018 15.3 0.0 0.045 14.1 0.0 1.6 1 0 0 1 1 1 0 Iron-sulphur cluster assembly MMR_HSR1 PF01926.18 gi|218883435|ref|YP_002427817.1| - 0.044 13.7 0.0 0.14 12.1 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase ThiC PF01964.13 gi|218883436|ref|YP_002427818.1| - 2.8e-166 553.2 0.0 3.1e-166 553.0 0.0 1.0 1 0 0 1 1 1 1 ThiC family Aminotran_3 PF00202.16 gi|218883438|ref|YP_002427820.1| - 5e-97 324.7 0.0 5.9e-97 324.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Radical_SAM PF04055.16 gi|218883439|ref|YP_002427821.1| - 6.2e-26 91.5 0.2 1.4e-25 90.3 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|218883439|ref|YP_002427821.1| - 3e-06 27.1 0.1 1.5e-05 24.9 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|218883439|ref|YP_002427821.1| - 0.051 13.6 0.0 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF763 PF05559.6 gi|218883440|ref|YP_002427822.1| - 7.7e-103 343.7 0.0 9.1e-103 343.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Turandot PF07240.6 gi|218883440|ref|YP_002427822.1| - 0.0091 15.4 0.3 0.56 9.7 0.0 2.5 2 0 0 2 2 2 1 Stress-inducible humoral factor Turandot HHH_5 PF14520.1 gi|218883440|ref|YP_002427822.1| - 0.12 12.5 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Fe-ADH PF00465.14 gi|218883441|ref|YP_002427823.1| - 1.2e-86 290.6 0.1 1.4e-86 290.4 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|218883441|ref|YP_002427823.1| - 1.6e-16 60.4 3.0 6.7e-12 45.2 0.2 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|218883441|ref|YP_002427823.1| - 0.0026 16.7 0.4 0.011 14.6 0.0 2.0 2 0 0 2 2 2 1 3-dehydroquinate synthase Glyco_trans_2_3 PF13632.1 gi|218883442|ref|YP_002427824.1| - 9e-23 80.9 0.1 1.4e-22 80.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|218883442|ref|YP_002427824.1| - 7.1e-21 75.0 0.0 8.8e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|218883442|ref|YP_002427824.1| - 0.00029 20.1 0.0 0.00082 18.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|218883442|ref|YP_002427824.1| - 0.026 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF2226 PF09987.4 gi|218883443|ref|YP_002427825.1| - 0.15 11.1 4.1 0.065 12.3 0.5 2.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2226) SH3_3 PF08239.6 gi|218883444|ref|YP_002427826.1| - 0.044 13.9 1.3 0.093 12.9 0.9 1.5 1 0 0 1 1 1 0 Bacterial SH3 domain GHMP_kinases_N PF00288.21 gi|218883445|ref|YP_002427827.1| - 3.3e-20 71.8 0.1 6e-20 71.0 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|218883445|ref|YP_002427827.1| - 9.1e-07 28.9 0.3 9.6e-06 25.7 0.2 2.4 2 0 0 2 2 2 1 GHMP kinases C terminal CopD PF05425.8 gi|218883445|ref|YP_002427827.1| - 0.092 12.9 0.2 0.18 12.0 0.1 1.5 1 0 0 1 1 1 0 Copper resistance protein D ParA PF10609.4 gi|218883446|ref|YP_002427828.1| - 5.5e-29 99.8 0.2 9.2e-29 99.1 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|218883446|ref|YP_002427828.1| - 9.4e-16 57.7 0.1 1.4e-15 57.2 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|218883446|ref|YP_002427828.1| - 1.4e-07 30.8 1.9 3.8e-07 29.4 0.5 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|218883446|ref|YP_002427828.1| - 3.4e-07 30.3 0.0 2.8e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|218883446|ref|YP_002427828.1| - 8.9e-05 21.7 0.2 0.0054 15.9 0.1 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|218883446|ref|YP_002427828.1| - 0.00036 19.6 0.1 0.00078 18.5 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_10 PF12846.2 gi|218883446|ref|YP_002427828.1| - 0.0024 17.3 0.0 0.003 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_26 PF13500.1 gi|218883446|ref|YP_002427828.1| - 0.0025 17.4 0.0 1 8.9 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|218883446|ref|YP_002427828.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|218883446|ref|YP_002427828.1| - 0.038 13.4 0.2 0.1 12.0 0.1 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein PhoH PF02562.11 gi|218883446|ref|YP_002427828.1| - 0.06 12.5 0.3 0.14 11.3 0.1 1.6 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.7 gi|218883446|ref|YP_002427828.1| - 0.06 12.4 0.1 0.09 11.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|218883446|ref|YP_002427828.1| - 0.064 12.1 0.1 0.09 11.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain UPF0079 PF02367.12 gi|218883446|ref|YP_002427828.1| - 0.084 12.5 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 OrfB_Zn_ribbon PF07282.6 gi|218883447|ref|YP_002427829.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Snf7 PF03357.16 gi|218883449|ref|YP_002427831.1| - 0.0012 18.2 2.9 0.0018 17.7 1.9 1.4 1 1 0 1 1 1 1 Snf7 Ubie_methyltran PF01209.13 gi|218883449|ref|YP_002427831.1| - 0.0085 15.2 0.1 0.0094 15.0 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RPW8 PF05659.6 gi|218883449|ref|YP_002427831.1| - 0.01 15.3 2.7 0.85 9.1 0.5 3.0 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 LOH1CR12 PF10158.4 gi|218883449|ref|YP_002427831.1| - 0.067 12.9 0.4 0.15 11.8 0.2 1.9 1 1 0 1 1 1 0 Tumour suppressor protein Uso1_p115_C PF04871.8 gi|218883449|ref|YP_002427831.1| - 0.9 9.4 5.8 0.65 9.9 0.2 2.4 1 1 1 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region STT3 PF02516.9 gi|218883450|ref|YP_002427832.1| - 3.6e-21 75.6 40.8 5.9e-21 74.9 28.3 1.3 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit OTCace PF00185.19 gi|218883451|ref|YP_002427833.1| - 1.2e-54 184.4 0.0 3.7e-54 182.8 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|218883451|ref|YP_002427833.1| - 1.6e-49 167.2 0.3 5.7e-49 165.4 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DUF711 PF05167.7 gi|218883452|ref|YP_002427834.1| - 1.9e-46 158.5 0.0 1.6e-45 155.5 0.0 1.9 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) UPF0147 PF03685.8 gi|218883453|ref|YP_002427835.1| - 3.4e-34 116.5 0.5 3.8e-34 116.4 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|218883453|ref|YP_002427835.1| - 0.043 13.9 0.3 6.2 7.0 0.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0253) HEAT_PBS PF03130.11 gi|218883453|ref|YP_002427835.1| - 0.068 13.6 0.2 0.26 11.8 0.2 2.1 2 1 0 2 2 2 0 PBS lyase HEAT-like repeat Auto_anti-p27 PF06677.7 gi|218883454|ref|YP_002427836.1| - 2e-13 49.8 0.6 3e-13 49.2 0.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rieske PF00355.21 gi|218883454|ref|YP_002427836.1| - 0.036 13.6 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain Thymidylate_kin PF02223.12 gi|218883455|ref|YP_002427837.1| - 1.5e-42 145.0 0.0 1.7e-42 144.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_17 PF13207.1 gi|218883455|ref|YP_002427837.1| - 4.6e-06 27.4 0.0 8.5e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|218883455|ref|YP_002427837.1| - 1.1e-05 25.5 0.0 1.3e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|218883455|ref|YP_002427837.1| - 3.8e-05 24.0 0.0 8.6e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|218883455|ref|YP_002427837.1| - 0.00029 20.9 0.0 0.00043 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|218883455|ref|YP_002427837.1| - 0.00042 20.2 0.0 0.00063 19.6 0.0 1.3 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|218883455|ref|YP_002427837.1| - 0.00053 19.6 0.0 0.0011 18.6 0.0 1.5 2 0 0 2 2 1 1 Adenylylsulphate kinase AAA_16 PF13191.1 gi|218883455|ref|YP_002427837.1| - 0.00092 19.2 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|218883455|ref|YP_002427837.1| - 0.0012 18.4 0.0 0.0036 16.9 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 PPK2 PF03976.9 gi|218883455|ref|YP_002427837.1| - 0.0017 17.7 0.0 0.004 16.4 0.0 1.7 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) dNK PF01712.14 gi|218883455|ref|YP_002427837.1| - 0.005 16.7 1.5 0.38 10.6 0.2 3.3 1 1 2 3 3 3 1 Deoxynucleoside kinase Arf PF00025.16 gi|218883455|ref|YP_002427837.1| - 0.0061 15.8 0.0 0.0088 15.2 0.0 1.3 1 0 0 1 1 1 1 ADP-ribosylation factor family PRK PF00485.13 gi|218883455|ref|YP_002427837.1| - 0.01 15.3 0.0 0.033 13.7 0.0 1.8 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|218883455|ref|YP_002427837.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain KTI12 PF08433.5 gi|218883455|ref|YP_002427837.1| - 0.02 14.0 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.9 gi|218883455|ref|YP_002427837.1| - 0.041 13.5 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|218883455|ref|YP_002427837.1| - 0.058 13.2 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|218883455|ref|YP_002427837.1| - 0.066 13.0 0.0 3.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Shikimate kinase Zeta_toxin PF06414.7 gi|218883455|ref|YP_002427837.1| - 0.075 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF126 PF01989.11 gi|218883456|ref|YP_002427838.1| - 3e-27 94.0 0.1 6.2e-27 93.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|218883457|ref|YP_002427839.1| - 1e-99 333.8 0.0 1.2e-99 333.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|218883458|ref|YP_002427840.1| - 7.3e-83 278.2 0.0 8.8e-83 278.0 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MobB PF03205.9 gi|218883459|ref|YP_002427841.1| - 2.6e-07 30.4 0.1 1.5e-06 27.9 0.0 2.3 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|218883459|ref|YP_002427841.1| - 0.00011 21.7 0.0 0.00022 20.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF460 PF04312.8 gi|218883460|ref|YP_002427842.1| - 0.12 11.9 0.3 0.4 10.1 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF460) AAA_25 PF13481.1 gi|218883461|ref|YP_002427843.1| - 4.8e-06 26.0 0.0 1.5e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|218883461|ref|YP_002427843.1| - 5.6e-06 25.6 0.1 0.011 14.8 0.0 2.1 1 1 1 2 2 2 2 KaiC AAA PF00004.24 gi|218883461|ref|YP_002427843.1| - 0.0016 18.6 0.0 0.0027 17.9 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|218883461|ref|YP_002427843.1| - 0.0055 16.3 0.0 0.0078 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|218883461|ref|YP_002427843.1| - 0.025 15.3 0.0 0.036 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|218883461|ref|YP_002427843.1| - 0.026 14.4 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|218883461|ref|YP_002427843.1| - 0.036 13.4 0.0 0.055 12.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Arch_ATPase PF01637.13 gi|218883461|ref|YP_002427843.1| - 0.053 13.2 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase Kinesin PF00225.18 gi|218883461|ref|YP_002427843.1| - 0.079 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain AAA_16 PF13191.1 gi|218883461|ref|YP_002427843.1| - 0.081 12.9 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.13 gi|218883461|ref|YP_002427843.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|218883461|ref|YP_002427843.1| - 0.17 11.5 0.0 0.28 10.8 0.0 1.5 1 1 0 1 1 1 0 NACHT domain DUF46 PF01864.12 gi|218883462|ref|YP_002427844.1| - 2.2e-31 109.0 4.8 8.6e-31 107.1 3.3 1.7 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|218883462|ref|YP_002427844.1| - 4e-08 33.2 0.5 4e-08 33.2 0.3 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family UPF0051 PF01458.12 gi|218883463|ref|YP_002427845.1| - 2.6e-45 154.6 0.2 3.5e-45 154.2 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UBA PF00627.26 gi|218883463|ref|YP_002427845.1| - 0.023 14.5 0.2 0.25 11.2 0.0 2.7 3 0 0 3 3 3 0 UBA/TS-N domain ABC_tran PF00005.22 gi|218883464|ref|YP_002427846.1| - 5.6e-21 75.2 0.0 7.5e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883464|ref|YP_002427846.1| - 3.9e-13 50.0 3.0 5.3e-12 46.2 2.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218883464|ref|YP_002427846.1| - 2.5e-08 33.4 0.1 0.0042 16.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|218883464|ref|YP_002427846.1| - 1.5e-05 24.5 0.0 0.00039 19.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|218883464|ref|YP_002427846.1| - 7.4e-05 22.2 0.0 0.00014 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|218883464|ref|YP_002427846.1| - 0.00028 21.3 0.1 0.00047 20.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|218883464|ref|YP_002427846.1| - 0.00054 19.4 0.1 0.036 13.4 0.0 2.1 2 0 0 2 2 2 1 MutS domain V DUF258 PF03193.11 gi|218883464|ref|YP_002427846.1| - 0.0079 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|218883464|ref|YP_002427846.1| - 0.017 13.7 0.1 0.025 13.1 0.0 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|218883464|ref|YP_002427846.1| - 0.018 14.6 0.1 0.039 13.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|218883464|ref|YP_002427846.1| - 0.02 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|218883464|ref|YP_002427846.1| - 0.021 15.6 0.1 0.035 14.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|218883464|ref|YP_002427846.1| - 0.022 13.4 0.0 0.031 12.9 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_22 PF13401.1 gi|218883464|ref|YP_002427846.1| - 0.044 13.9 0.0 0.094 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|218883464|ref|YP_002427846.1| - 0.077 12.4 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_13 PF13166.1 gi|218883464|ref|YP_002427846.1| - 0.078 11.4 0.1 0.63 8.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|218883464|ref|YP_002427846.1| - 0.098 12.6 0.1 0.11 12.4 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|218883464|ref|YP_002427846.1| - 0.11 11.9 0.1 2.8 7.3 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cobW PF02492.14 gi|218883464|ref|YP_002427846.1| - 0.11 11.9 0.7 0.33 10.3 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|218883464|ref|YP_002427846.1| - 0.14 11.8 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|218883464|ref|YP_002427846.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|218883464|ref|YP_002427846.1| - 0.14 11.1 0.2 0.28 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain DEAD_assoc PF08494.6 gi|218883465|ref|YP_002427847.1| - 4e-53 179.9 0.0 8.4e-53 178.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|218883465|ref|YP_002427847.1| - 6.9e-30 103.7 0.0 5.4e-29 100.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|218883465|ref|YP_002427847.1| - 2.7e-14 52.8 0.1 1.6e-13 50.2 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|218883465|ref|YP_002427847.1| - 9.9e-07 28.7 0.0 2.7e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.24 gi|218883465|ref|YP_002427847.1| - 0.0073 16.5 3.5 1.4 9.1 0.6 3.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SNF2_N PF00176.18 gi|218883465|ref|YP_002427847.1| - 0.11 11.2 0.0 0.36 9.5 0.0 1.8 1 1 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|218883465|ref|YP_002427847.1| - 0.28 11.3 4.4 16 5.6 0.6 3.8 2 2 0 2 2 2 0 AAA domain Glyco_tranf_2_3 PF13641.1 gi|218883466|ref|YP_002427848.1| - 2.6e-22 79.7 0.0 4e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|218883466|ref|YP_002427848.1| - 1e-16 61.2 1.4 1e-16 61.2 1.0 2.7 2 1 1 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|218883466|ref|YP_002427848.1| - 2.3e-10 40.3 0.0 3.7e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|218883466|ref|YP_002427848.1| - 4.6e-05 22.7 0.0 0.00038 19.7 0.0 2.1 1 1 1 2 2 2 1 Glycosyl transferase family 21 Lactamase_B_3 PF13483.1 gi|218883467|ref|YP_002427849.1| - 3e-37 127.8 0.3 4.2e-37 127.3 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|218883467|ref|YP_002427849.1| - 3e-14 53.0 1.5 1.8e-12 47.2 1.0 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|218883467|ref|YP_002427849.1| - 0.13 11.9 6.3 1.1 8.9 3.1 2.3 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily zf-Di19 PF05605.7 gi|218883469|ref|YP_002427851.1| - 0.11 12.6 0.5 7.5 6.7 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF2087 PF09860.4 gi|218883470|ref|YP_002427852.1| - 0.025 14.3 0.1 0.037 13.7 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) Thioredoxin_3 PF13192.1 gi|218883471|ref|YP_002427853.1| - 8.4e-08 31.9 0.0 1.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain PYNP_C PF07831.8 gi|218883472|ref|YP_002427854.1| - 4.3e-14 51.7 0.0 1.2e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|218883472|ref|YP_002427854.1| - 3.6e-11 42.9 3.9 3.9e-10 39.5 0.9 2.9 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|218883472|ref|YP_002427854.1| - 1.6e-10 40.4 0.2 4.9e-10 38.8 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain CDC48_N PF02359.13 gi|218883472|ref|YP_002427854.1| - 2.5e-07 30.5 0.2 5.1e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.16 gi|218883472|ref|YP_002427854.1| - 0.00022 21.0 0.6 0.0028 17.4 0.0 2.3 2 1 1 3 3 3 2 Molydopterin dinucleotide binding domain Biotin_lipoyl_2 PF13533.1 gi|218883472|ref|YP_002427854.1| - 0.02 14.5 0.0 0.16 11.6 0.0 2.6 2 1 0 2 2 2 0 Biotin-lipoyl like DUF2254 PF10011.4 gi|218883472|ref|YP_002427854.1| - 0.032 12.7 0.0 0.053 11.9 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) FAD_oxidored PF12831.2 gi|218883473|ref|YP_002427855.1| - 9.6e-11 41.3 0.2 1.7e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|218883473|ref|YP_002427855.1| - 5.4e-10 38.6 3.2 3.9e-06 25.9 0.5 2.9 3 1 1 4 4 4 2 FAD binding domain Lycopene_cycl PF05834.7 gi|218883473|ref|YP_002427855.1| - 1.3e-09 37.4 0.0 2.2e-07 30.1 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|218883473|ref|YP_002427855.1| - 4.6e-08 32.3 3.5 7.3e-05 21.8 0.5 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|218883473|ref|YP_002427855.1| - 1.1e-07 31.2 3.7 5.5e-05 22.3 0.2 3.3 3 1 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|218883473|ref|YP_002427855.1| - 6.6e-07 29.4 0.5 1e-05 25.5 0.2 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|218883473|ref|YP_002427855.1| - 2.6e-06 27.3 0.6 0.0025 17.7 0.3 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|218883473|ref|YP_002427855.1| - 7.5e-06 24.8 0.5 0.015 13.9 0.0 2.6 2 1 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.9 gi|218883473|ref|YP_002427855.1| - 1.4e-05 23.7 0.2 6.3e-05 21.6 0.0 2.1 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|218883473|ref|YP_002427855.1| - 1.5e-05 24.2 0.1 2.8e-05 23.3 0.1 1.6 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|218883473|ref|YP_002427855.1| - 4.4e-05 22.5 0.4 6.5e-05 21.9 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|218883473|ref|YP_002427855.1| - 0.0021 18.4 0.8 0.13 12.7 0.1 3.0 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|218883473|ref|YP_002427855.1| - 0.035 13.7 0.1 0.035 13.7 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|218883473|ref|YP_002427855.1| - 0.073 13.1 0.1 0.17 11.9 0.1 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|218883473|ref|YP_002427855.1| - 0.33 10.3 1.4 0.38 10.0 0.1 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF429 PF04250.8 gi|218883474|ref|YP_002427856.1| - 6.7e-23 81.0 0.0 2.1e-22 79.4 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DHH PF01368.15 gi|218883475|ref|YP_002427857.1| - 2.4e-07 30.4 0.1 3.6e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|218883475|ref|YP_002427857.1| - 0.00011 21.7 0.2 0.00024 20.7 0.2 1.6 1 0 0 1 1 1 1 DHHA1 domain T2SE PF00437.15 gi|218883477|ref|YP_002427859.1| - 3.9e-51 173.5 0.0 6.3e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|218883477|ref|YP_002427859.1| - 8.9e-05 22.8 0.0 0.00025 21.3 0.0 1.8 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|218883477|ref|YP_002427859.1| - 0.00072 19.0 0.2 0.002 17.5 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|218883477|ref|YP_002427859.1| - 0.0067 16.1 0.1 0.029 14.0 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain PIF1 PF05970.9 gi|218883477|ref|YP_002427859.1| - 0.011 14.7 0.1 0.018 13.9 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase FtsK_SpoIIIE PF01580.13 gi|218883477|ref|YP_002427859.1| - 0.013 14.9 0.1 0.048 13.1 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family ATP-synt_ab PF00006.20 gi|218883477|ref|YP_002427859.1| - 0.016 14.7 0.4 0.15 11.5 0.3 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|218883477|ref|YP_002427859.1| - 0.016 15.1 1.8 0.036 14.0 0.1 2.4 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|218883477|ref|YP_002427859.1| - 0.017 14.6 0.1 0.033 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|218883477|ref|YP_002427859.1| - 0.026 13.1 0.2 0.14 10.7 0.5 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF258 PF03193.11 gi|218883477|ref|YP_002427859.1| - 0.04 13.0 0.0 0.079 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|218883477|ref|YP_002427859.1| - 0.055 13.7 0.1 0.055 13.7 0.0 2.3 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|218883477|ref|YP_002427859.1| - 0.066 12.9 0.2 0.28 10.8 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF556 PF04476.8 gi|218883477|ref|YP_002427859.1| - 0.072 12.3 0.1 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF556) AAA_25 PF13481.1 gi|218883477|ref|YP_002427859.1| - 0.077 12.3 0.1 0.22 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|218883477|ref|YP_002427859.1| - 0.13 13.0 0.9 0.79 10.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|218883477|ref|YP_002427859.1| - 0.21 11.8 4.7 0.48 10.7 0.0 3.1 2 1 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|218883478|ref|YP_002427860.1| - 9.6e-11 41.6 8.1 4.7e-08 32.9 0.1 4.8 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|218883479|ref|YP_002427861.1| - 0.01 16.5 0.3 0.024 15.3 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) DUF3793 PF12672.2 gi|218883479|ref|YP_002427861.1| - 0.05 13.1 0.0 0.076 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3793) DUF2341 PF10102.4 gi|218883481|ref|YP_002427863.1| - 2.2e-18 66.1 0.6 8.9e-18 64.2 0.2 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) Abi PF02517.11 gi|218883483|ref|YP_002427865.1| - 0.093 12.8 0.1 0.13 12.4 0.1 1.4 1 1 0 1 1 1 0 CAAX protease self-immunity NodZ PF05830.6 gi|218883483|ref|YP_002427865.1| - 0.13 10.7 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein Z (NodZ) Collagen_bind PF05737.7 gi|218883484|ref|YP_002427866.1| - 0.81 9.8 5.3 0.97 9.6 0.0 3.0 4 0 0 4 4 4 0 Collagen binding domain DUF3290 PF11694.3 gi|218883485|ref|YP_002427867.1| - 0.87 9.3 5.0 0.22 11.2 0.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) Tmemb_170 PF10190.4 gi|218883485|ref|YP_002427867.1| - 4.9 7.2 9.3 13 5.9 0.5 2.8 2 1 0 2 2 2 0 Putative transmembrane protein 170 Rab5ip PF07019.7 gi|218883485|ref|YP_002427867.1| - 5.9 7.1 8.4 3.3 7.9 3.3 2.2 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) DUF2258 PF10015.4 gi|218883486|ref|YP_002427868.1| - 0.033 14.0 0.1 0.11 12.2 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2258) DZR PF12773.2 gi|218883486|ref|YP_002427868.1| - 0.033 13.9 0.3 0.058 13.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|218883486|ref|YP_002427868.1| - 0.036 13.7 2.2 1.7 8.3 0.3 2.9 3 0 0 3 3 3 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|218883486|ref|YP_002427868.1| - 0.13 11.7 2.5 0.91 9.0 2.0 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|218883486|ref|YP_002427868.1| - 0.27 10.5 4.0 1.1 8.5 2.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|218883486|ref|YP_002427868.1| - 0.53 9.8 5.0 5.1 6.7 3.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TPR_12 PF13424.1 gi|218883487|ref|YP_002427869.1| - 0.0047 16.8 2.0 1.8 8.5 0.0 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat DUF1657 PF07870.6 gi|218883487|ref|YP_002427869.1| - 0.017 14.7 0.5 0.017 14.7 0.4 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF1657) zf-FCS PF06467.9 gi|218883487|ref|YP_002427869.1| - 0.019 14.6 0.4 0.073 12.7 0.1 2.1 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif TPR_8 PF13181.1 gi|218883487|ref|YP_002427869.1| - 0.049 13.4 0.3 0.049 13.4 0.2 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat MIT PF04212.13 gi|218883487|ref|YP_002427869.1| - 0.12 12.2 5.8 6.4 6.7 0.1 3.3 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain Rad50_zn_hook PF04423.9 gi|218883487|ref|YP_002427869.1| - 0.12 11.8 0.0 0.12 11.8 0.0 2.7 3 0 0 3 3 3 0 Rad50 zinc hook motif TPR_2 PF07719.12 gi|218883487|ref|YP_002427869.1| - 0.61 10.1 10.4 0.85 9.6 0.2 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Band_7_1 PF13421.1 gi|218883488|ref|YP_002427870.1| - 6.2e-34 117.3 0.0 9.1e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|218883488|ref|YP_002427870.1| - 1.5e-14 54.3 0.0 2.4e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family SHOCT PF09851.4 gi|218883488|ref|YP_002427870.1| - 7.5e-09 34.7 5.4 1.4e-08 33.9 3.7 1.5 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|218883488|ref|YP_002427870.1| - 0.0017 18.0 2.1 0.004 16.9 0.4 2.1 2 0 0 2 2 2 1 Gas vesicle protein G DMAP_binding PF06464.6 gi|218883488|ref|YP_002427870.1| - 0.002 18.7 2.4 0.0043 17.6 1.7 1.5 1 0 0 1 1 1 1 DMAP1-binding Domain GIIM PF08388.6 gi|218883489|ref|YP_002427871.1| - 0.016 14.9 0.0 0.037 13.7 0.0 1.7 1 0 0 1 1 1 0 Group II intron, maturase-specific domain DUF1241 PF06840.6 gi|218883489|ref|YP_002427871.1| - 0.017 14.3 0.3 0.036 13.3 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1241) TBCA PF02970.11 gi|218883489|ref|YP_002427871.1| - 0.022 14.8 2.9 0.048 13.7 0.1 2.5 2 2 1 3 3 3 0 Tubulin binding cofactor A Hemerythrin PF01814.18 gi|218883489|ref|YP_002427871.1| - 0.041 14.0 1.1 0.22 11.6 0.4 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain UPF0122 PF04297.9 gi|218883489|ref|YP_002427871.1| - 0.12 12.4 1.0 0.77 9.8 0.1 2.2 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Takusan PF04822.8 gi|218883489|ref|YP_002427871.1| - 0.32 10.7 1.8 4.7 7.0 0.1 2.6 2 1 0 2 2 2 0 Takusan DUF2448 PF10476.4 gi|218883490|ref|YP_002427872.1| - 0.4 10.1 2.4 0.45 10.0 0.7 1.7 1 1 1 2 2 2 0 Protein of unknown function C-terminus (DUF2448) PTS_EIIC PF02378.13 gi|218883490|ref|YP_002427872.1| - 0.61 8.8 16.9 0.89 8.3 11.7 1.5 1 1 0 1 1 1 0 Phosphotransferase system, EIIC BIV_Env PF05858.7 gi|218883490|ref|YP_002427872.1| - 0.75 7.6 8.3 0.83 7.5 5.8 1.0 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) PalH PF08733.5 gi|218883490|ref|YP_002427872.1| - 3.5 6.3 7.0 9.1 5.0 4.8 1.8 1 1 0 1 1 1 0 PalH/RIM21 Claudin_2 PF13903.1 gi|218883492|ref|YP_002427874.1| - 0.056 13.1 1.1 0.064 12.9 0.8 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF3917 PF13055.1 gi|218883492|ref|YP_002427874.1| - 0.16 12.2 1.9 0.51 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3917) IncA PF04156.9 gi|218883492|ref|YP_002427874.1| - 0.25 10.9 1.7 27 4.2 0.0 2.1 2 0 0 2 2 2 0 IncA protein TrmB PF01978.14 gi|218883493|ref|YP_002427875.1| - 8.3e-05 22.2 0.1 0.00029 20.4 0.1 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|218883493|ref|YP_002427875.1| - 0.00021 21.3 0.0 0.00041 20.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|218883493|ref|YP_002427875.1| - 0.00022 20.6 0.1 0.00045 19.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|218883493|ref|YP_002427875.1| - 0.0075 16.4 0.2 0.04 14.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix PadR PF03551.9 gi|218883493|ref|YP_002427875.1| - 0.0094 15.7 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_28 PF13518.1 gi|218883493|ref|YP_002427875.1| - 0.01 15.8 0.1 0.02 14.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|218883493|ref|YP_002427875.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|218883493|ref|YP_002427875.1| - 0.02 14.5 0.1 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.11 gi|218883493|ref|YP_002427875.1| - 0.026 14.6 0.7 0.047 13.7 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor DUF3877 PF12993.2 gi|218883493|ref|YP_002427875.1| - 0.036 13.6 1.0 0.56 9.7 0.7 2.1 1 1 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3877) HTH_23 PF13384.1 gi|218883493|ref|YP_002427875.1| - 0.064 12.9 0.7 0.15 11.7 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain zf-C4H2 PF10146.4 gi|218883493|ref|YP_002427875.1| - 0.11 12.5 4.2 0.14 12.1 2.9 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein KIAA1430 PF13879.1 gi|218883493|ref|YP_002427875.1| - 1.3 9.4 8.1 3.2 8.2 1.8 2.3 2 0 0 2 2 2 0 KIAA1430 homologue AAA PF00004.24 gi|218883494|ref|YP_002427876.1| - 2.5e-33 115.0 0.0 4.3e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|218883494|ref|YP_002427876.1| - 2.5e-14 52.8 1.5 6.7e-14 51.5 1.1 1.8 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_17 PF13207.1 gi|218883494|ref|YP_002427876.1| - 7.8e-06 26.7 0.1 4.3e-05 24.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|218883494|ref|YP_002427876.1| - 9.8e-06 25.7 0.0 6.7e-05 23.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|218883494|ref|YP_002427876.1| - 1.3e-05 25.1 0.0 4.5e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|218883494|ref|YP_002427876.1| - 8.3e-05 21.7 0.0 0.0002 20.4 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Vps4_C PF09336.5 gi|218883494|ref|YP_002427876.1| - 0.00012 21.8 0.0 0.00029 20.6 0.0 1.7 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain Viral_helicase1 PF01443.13 gi|218883494|ref|YP_002427876.1| - 0.00013 21.5 0.0 0.00033 20.2 0.0 1.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_25 PF13481.1 gi|218883494|ref|YP_002427876.1| - 0.00014 21.3 0.0 0.17 11.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|218883494|ref|YP_002427876.1| - 0.00016 21.6 0.0 0.00032 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|218883494|ref|YP_002427876.1| - 0.00021 20.7 0.0 0.00037 19.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein TPR_11 PF13414.1 gi|218883494|ref|YP_002427876.1| - 0.00026 20.5 2.8 0.00031 20.3 1.0 1.9 2 0 0 2 2 1 1 TPR repeat AAA_18 PF13238.1 gi|218883494|ref|YP_002427876.1| - 0.00027 21.2 0.1 0.0015 18.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|218883494|ref|YP_002427876.1| - 0.0006 18.6 0.4 0.0086 14.8 0.0 2.4 2 1 1 3 3 3 1 TIP49 C-terminus TPR_1 PF00515.23 gi|218883494|ref|YP_002427876.1| - 0.00061 19.2 2.2 0.0011 18.4 0.5 2.3 2 0 0 2 2 1 1 Tetratricopeptide repeat AAA_5 PF07728.9 gi|218883494|ref|YP_002427876.1| - 0.00082 19.1 0.0 0.0033 17.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|218883494|ref|YP_002427876.1| - 0.0016 18.4 0.0 0.46 10.4 0.0 3.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|218883494|ref|YP_002427876.1| - 0.0016 18.3 0.0 0.0041 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|218883494|ref|YP_002427876.1| - 0.0034 16.9 0.0 0.048 13.1 0.0 2.3 2 1 1 3 3 2 1 ATP synthase alpha/beta family, nucleotide-binding domain TPR_2 PF07719.12 gi|218883494|ref|YP_002427876.1| - 0.0066 16.2 1.8 0.02 14.7 0.1 2.7 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|218883494|ref|YP_002427876.1| - 0.0085 16.4 1.9 1.3 9.6 0.3 3.9 3 1 0 3 3 2 1 Tetratricopeptide repeat Zeta_toxin PF06414.7 gi|218883494|ref|YP_002427876.1| - 0.0092 15.1 0.0 0.029 13.4 0.0 1.9 1 1 0 1 1 1 1 Zeta toxin Arch_ATPase PF01637.13 gi|218883494|ref|YP_002427876.1| - 0.0093 15.6 3.3 1.2 8.7 0.0 3.0 3 1 1 4 4 4 2 Archaeal ATPase RNA_helicase PF00910.17 gi|218883494|ref|YP_002427876.1| - 0.0094 16.1 0.0 0.035 14.2 0.0 2.1 2 0 0 2 2 1 1 RNA helicase TPR_12 PF13424.1 gi|218883494|ref|YP_002427876.1| - 0.012 15.4 0.2 0.035 14.0 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF815 PF05673.8 gi|218883494|ref|YP_002427876.1| - 0.016 14.1 0.0 0.03 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|218883494|ref|YP_002427876.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|218883494|ref|YP_002427876.1| - 0.021 14.0 0.1 5.7 6.0 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|218883494|ref|YP_002427876.1| - 0.028 14.1 0.1 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|218883494|ref|YP_002427876.1| - 0.042 13.2 1.1 36 3.6 0.0 3.9 3 2 1 4 4 4 0 AAA-like domain TPR_7 PF13176.1 gi|218883494|ref|YP_002427876.1| - 0.052 13.3 0.7 0.65 9.9 0.0 2.8 3 0 0 3 3 2 0 Tetratricopeptide repeat Mg_chelatase PF01078.16 gi|218883494|ref|YP_002427876.1| - 0.09 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Prolactin_RP PF15172.1 gi|218883494|ref|YP_002427876.1| - 0.14 11.4 0.0 0.28 10.4 0.0 1.4 1 0 0 1 1 1 0 Prolactin-releasing peptide TPR_14 PF13428.1 gi|218883494|ref|YP_002427876.1| - 0.14 12.8 0.0 2 9.2 0.0 2.9 1 1 0 1 1 1 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|218883494|ref|YP_002427876.1| - 0.16 11.8 5.1 0.12 12.1 0.4 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat Cren7 PF11520.3 gi|218883495|ref|YP_002427877.1| - 3e-31 106.8 2.1 3.2e-31 106.7 1.5 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DHO_dh PF01180.16 gi|218883496|ref|YP_002427878.1| - 3.1e-34 118.2 0.0 7.1e-29 100.6 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4_21 PF14697.1 gi|218883496|ref|YP_002427878.1| - 5.8e-12 45.2 8.4 1.5e-11 43.9 5.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|218883496|ref|YP_002427878.1| - 2.1e-11 44.0 11.5 4.8e-11 42.8 8.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|218883496|ref|YP_002427878.1| - 1e-10 40.7 19.5 3.6e-06 26.3 1.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|218883496|ref|YP_002427878.1| - 3.8e-10 39.1 17.5 6.1e-06 25.8 1.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218883496|ref|YP_002427878.1| - 3.2e-09 36.4 8.9 4.1e-09 36.0 5.4 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218883496|ref|YP_002427878.1| - 1.3e-08 34.9 11.2 2.7e-08 33.9 7.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218883496|ref|YP_002427878.1| - 2.8e-08 33.1 18.5 1.3e-05 24.8 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|218883496|ref|YP_002427878.1| - 6.9e-06 26.7 5.8 0.01 16.5 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain NMO PF03060.10 gi|218883496|ref|YP_002427878.1| - 1.4e-05 24.4 2.8 3.2e-05 23.2 1.9 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase Fer4_8 PF13183.1 gi|218883496|ref|YP_002427878.1| - 2.4e-05 24.2 12.1 6.2e-05 22.9 7.7 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain FMN_dh PF01070.13 gi|218883496|ref|YP_002427878.1| - 0.00029 19.8 1.2 0.0027 16.6 0.7 2.3 2 1 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_17 PF13534.1 gi|218883496|ref|YP_002427878.1| - 0.00062 20.0 12.0 0.035 14.4 8.3 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218883496|ref|YP_002427878.1| - 0.0012 19.3 11.8 0.0094 16.4 1.6 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|218883496|ref|YP_002427878.1| - 0.0022 18.1 19.0 0.044 14.1 2.3 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain His_biosynth PF00977.16 gi|218883496|ref|YP_002427878.1| - 0.0034 16.6 0.0 0.014 14.6 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Fer4_13 PF13370.1 gi|218883496|ref|YP_002427878.1| - 0.0082 16.5 10.2 0.4 11.1 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|218883496|ref|YP_002427878.1| - 0.0096 16.4 19.8 0.057 14.0 3.3 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|218883496|ref|YP_002427878.1| - 0.021 14.6 5.2 0.049 13.5 3.6 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|218883496|ref|YP_002427878.1| - 0.024 15.0 17.6 0.19 12.1 2.3 2.6 2 1 1 3 3 2 0 4Fe-4S dicluster domain Glu_synthase PF01645.12 gi|218883496|ref|YP_002427878.1| - 0.11 11.3 0.1 0.17 10.7 0.1 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase IMPDH PF00478.20 gi|218883496|ref|YP_002427878.1| - 0.12 11.1 0.3 0.22 10.3 0.2 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PGK PF00162.14 gi|218883497|ref|YP_002427879.1| - 4e-103 344.9 0.0 4.6e-103 344.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.15 gi|218883498|ref|YP_002427880.1| - 3.1e-14 52.7 0.0 4.6e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|218883498|ref|YP_002427880.1| - 7.2e-12 45.5 0.1 2.4e-10 40.5 0.1 2.5 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|218883498|ref|YP_002427880.1| - 2.7e-06 27.3 0.0 8.4e-06 25.7 0.0 1.9 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Usp PF00582.21 gi|218883499|ref|YP_002427881.1| - 2.2e-20 73.2 0.3 8.2e-20 71.4 0.2 1.7 1 1 0 1 1 1 1 Universal stress protein family Glycos_transf_1 PF00534.15 gi|218883500|ref|YP_002427882.1| - 7.4e-13 48.2 0.0 1.4e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphorylase PF00343.15 gi|218883500|ref|YP_002427882.1| - 1.6e-09 36.3 0.0 4.2e-08 31.5 0.0 2.1 2 0 0 2 2 2 1 Carbohydrate phosphorylase Glyco_trans_1_4 PF13692.1 gi|218883500|ref|YP_002427882.1| - 1.3e-05 25.3 0.0 3.2e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Pox_ATPase-GT PF10640.4 gi|218883500|ref|YP_002427882.1| - 0.06 12.1 0.3 0.24 10.1 0.1 1.8 2 0 0 2 2 2 0 mRNA capping enzyme N-terminal, ATPase and guanylyltransferase Lipoprotein_3 PF00938.12 gi|218883500|ref|YP_002427882.1| - 0.064 13.0 0.2 15 5.4 0.0 2.5 2 0 0 2 2 2 0 Lipoprotein Glyco_trans_1_2 PF13524.1 gi|218883500|ref|YP_002427882.1| - 0.075 13.3 0.0 2.5 8.4 0.0 2.4 1 1 0 1 1 1 0 Glycosyl transferases group 1 Peptidase_M28 PF04389.12 gi|218883501|ref|YP_002427883.1| - 4.7e-06 26.4 0.1 0.0016 18.2 0.0 2.6 3 0 0 3 3 3 2 Peptidase family M28 DUF2172 PF09940.4 gi|218883501|ref|YP_002427883.1| - 0.0011 17.4 0.3 0.16 10.3 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF2172) B5 PF03484.10 gi|218883502|ref|YP_002427884.1| - 4.7e-17 61.5 0.2 1e-11 44.4 0.1 2.9 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|218883502|ref|YP_002427884.1| - 2.3e-15 56.5 0.1 4.1e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|218883502|ref|YP_002427884.1| - 1.6e-05 24.2 0.0 4.4e-05 22.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Na_H_Exchanger PF00999.16 gi|218883503|ref|YP_002427885.1| - 1.2e-36 126.1 55.2 1.4e-36 125.8 38.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF4519 PF15012.1 gi|218883503|ref|YP_002427885.1| - 0.31 10.9 4.3 0.33 10.8 0.1 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) HTH_3 PF01381.17 gi|218883505|ref|YP_002427887.1| - 7.1e-05 22.5 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|218883505|ref|YP_002427887.1| - 0.00097 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Cro PF09048.5 gi|218883505|ref|YP_002427887.1| - 0.0011 18.5 0.0 0.0024 17.4 0.0 1.5 2 0 0 2 2 2 1 Cro Sigma70_r4_2 PF08281.7 gi|218883505|ref|YP_002427887.1| - 0.0025 17.2 0.1 0.0064 15.9 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 DUF134 PF02001.11 gi|218883505|ref|YP_002427887.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function DUF134 HTH_31 PF13560.1 gi|218883505|ref|YP_002427887.1| - 0.022 14.9 0.0 0.039 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|218883505|ref|YP_002427887.1| - 0.028 14.4 0.0 0.08 13.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|218883505|ref|YP_002427887.1| - 0.055 13.2 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DNA_binding_1 PF01035.15 gi|218883507|ref|YP_002427889.1| - 1.5e-19 69.4 0.0 1.8e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain CoA_transf_3 PF02515.12 gi|218883508|ref|YP_002427890.1| - 1e-57 194.5 0.0 1.3e-57 194.1 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III G_glu_transpept PF01019.16 gi|218883509|ref|YP_002427891.1| - 1e-93 314.5 0.0 1.2e-93 314.3 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase GHMP_kinases_C PF08544.8 gi|218883510|ref|YP_002427892.1| - 2.2e-06 27.7 0.0 6.5e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|218883510|ref|YP_002427892.1| - 0.00012 22.0 0.3 0.00028 20.8 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain Cas_Csy4 PF09618.5 gi|218883510|ref|YP_002427892.1| - 0.0089 15.8 0.0 0.78 9.5 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Csy4) DUF447 PF04289.7 gi|218883511|ref|YP_002427893.1| - 2e-13 50.3 0.0 2.2e-13 50.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) ERCC4 PF02732.10 gi|218883511|ref|YP_002427893.1| - 0.054 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 ERCC4 domain DUF1270 PF06900.6 gi|218883511|ref|YP_002427893.1| - 0.075 13.1 0.2 0.21 11.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) DUF1464 PF07318.7 gi|218883512|ref|YP_002427894.1| - 9.6e-94 313.9 1.0 1.1e-93 313.7 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) BcrAD_BadFG PF01869.15 gi|218883512|ref|YP_002427894.1| - 0.009 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MatE PF01554.13 gi|218883513|ref|YP_002427895.1| - 3.5e-45 153.5 34.2 1.7e-24 86.2 6.4 3.1 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|218883513|ref|YP_002427895.1| - 9.2e-11 41.7 9.2 9.2e-11 41.7 6.4 5.1 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain RebB PF11747.3 gi|218883513|ref|YP_002427895.1| - 0.26 11.2 8.0 0.04 13.7 1.1 2.4 2 0 0 2 2 2 0 Killing trait HAD_2 PF13419.1 gi|218883514|ref|YP_002427896.1| - 1.1e-19 71.3 0.0 1.4e-19 71.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|218883514|ref|YP_002427896.1| - 2.5e-06 28.0 0.0 1.3e-05 25.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|218883514|ref|YP_002427896.1| - 4.7e-06 26.2 0.0 8.1e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like MoCF_biosynth PF00994.19 gi|218883515|ref|YP_002427897.1| - 1e-24 86.5 0.1 1.2e-24 86.3 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain TMEM154 PF15102.1 gi|218883516|ref|YP_002427898.1| - 0.0018 17.9 6.3 0.0033 17.1 4.4 1.4 1 0 0 1 1 1 1 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|218883516|ref|YP_002427898.1| - 0.0025 17.4 1.5 0.0031 17.2 1.0 1.1 1 0 0 1 1 1 1 Rifin/stevor family TPP_enzyme_C PF02775.16 gi|218883516|ref|YP_002427898.1| - 0.1 12.1 0.5 3.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MGC-24 PF05283.6 gi|218883516|ref|YP_002427898.1| - 0.17 11.6 7.4 0.25 11.0 5.1 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) gpUL132 PF11359.3 gi|218883516|ref|YP_002427898.1| - 3.5 6.9 11.7 6.6 5.9 8.1 1.5 1 0 0 1 1 1 0 Glycoprotein UL132 KaiC PF06745.8 gi|218883517|ref|YP_002427899.1| - 1.5e-21 76.6 0.1 1.9e-21 76.2 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|218883517|ref|YP_002427899.1| - 2.2e-12 46.7 0.0 3.5e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|218883517|ref|YP_002427899.1| - 2e-05 24.7 0.0 4.6e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|218883517|ref|YP_002427899.1| - 0.00015 21.7 0.0 0.00038 20.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|218883517|ref|YP_002427899.1| - 0.00039 20.1 0.4 0.046 13.3 0.3 2.8 1 1 0 1 1 1 1 NACHT domain SRP54 PF00448.17 gi|218883517|ref|YP_002427899.1| - 0.00044 19.7 0.0 0.0012 18.2 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|218883517|ref|YP_002427899.1| - 0.00062 19.2 0.0 0.0014 18.0 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_31 PF13614.1 gi|218883517|ref|YP_002427899.1| - 0.0015 18.5 0.0 0.025 14.5 0.0 2.4 2 1 1 3 3 2 1 AAA domain DnaB_C PF03796.10 gi|218883517|ref|YP_002427899.1| - 0.0021 16.9 0.1 0.0044 15.9 0.1 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|218883517|ref|YP_002427899.1| - 0.0066 15.9 0.0 0.0078 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|218883517|ref|YP_002427899.1| - 0.0067 16.4 0.0 0.018 15.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.18 gi|218883517|ref|YP_002427899.1| - 0.007 15.7 0.1 0.013 14.9 0.0 1.7 2 1 0 2 2 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_ATPase PF01637.13 gi|218883517|ref|YP_002427899.1| - 0.0084 15.8 0.0 0.017 14.7 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|218883517|ref|YP_002427899.1| - 0.014 14.2 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|218883517|ref|YP_002427899.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|218883517|ref|YP_002427899.1| - 0.016 14.1 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|218883517|ref|YP_002427899.1| - 0.017 14.8 0.0 0.051 13.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Elong_Iki1 PF10483.4 gi|218883517|ref|YP_002427899.1| - 0.018 14.4 0.0 0.057 12.7 0.0 1.9 1 1 0 1 1 1 0 Elongator subunit Iki1 T2SE PF00437.15 gi|218883517|ref|YP_002427899.1| - 0.02 13.8 0.0 0.041 12.7 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|218883517|ref|YP_002427899.1| - 0.023 14.7 0.0 0.064 13.2 0.0 1.6 1 1 1 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|218883517|ref|YP_002427899.1| - 0.038 14.2 0.0 0.063 13.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.20 gi|218883517|ref|YP_002427899.1| - 0.063 12.7 0.0 0.098 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|218883517|ref|YP_002427899.1| - 0.078 12.6 0.0 0.17 11.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|218883517|ref|YP_002427899.1| - 0.081 12.1 0.0 0.44 9.7 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Sigma54_activat PF00158.21 gi|218883517|ref|YP_002427899.1| - 0.082 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF835 PF05763.7 gi|218883517|ref|YP_002427899.1| - 0.088 12.3 0.5 0.43 10.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF835) AAA_18 PF13238.1 gi|218883517|ref|YP_002427899.1| - 0.098 12.9 0.1 0.23 11.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|218883517|ref|YP_002427899.1| - 0.11 11.5 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Zeta_toxin PF06414.7 gi|218883517|ref|YP_002427899.1| - 0.13 11.3 0.0 0.39 9.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_29 PF13555.1 gi|218883517|ref|YP_002427899.1| - 0.15 11.6 0.0 0.36 10.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fer2_4 PF13510.1 gi|218883518|ref|YP_002427900.1| - 4.3e-20 71.2 0.0 8.8e-20 70.3 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.9 gi|218883518|ref|YP_002427900.1| - 2.3e-15 57.0 11.0 1.2e-13 51.4 7.6 3.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|218883518|ref|YP_002427900.1| - 9e-13 48.7 1.2 5.5e-08 33.1 0.6 3.2 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|218883518|ref|YP_002427900.1| - 2.5e-10 39.9 4.3 4.9e-07 29.1 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|218883518|ref|YP_002427900.1| - 9.1e-10 38.4 4.5 5.9e-05 23.0 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|218883518|ref|YP_002427900.1| - 9.2e-09 34.6 9.4 0.0004 19.3 0.0 3.8 3 1 1 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|218883518|ref|YP_002427900.1| - 1.1e-08 34.4 2.5 4.6e-06 25.8 0.1 2.3 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.2 gi|218883518|ref|YP_002427900.1| - 2e-08 33.7 0.0 2e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|218883518|ref|YP_002427900.1| - 4.7e-08 32.2 11.0 2e-07 30.2 0.7 3.3 2 2 1 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|218883518|ref|YP_002427900.1| - 8.5e-08 31.4 6.9 1.4e-05 24.1 0.0 3.5 4 0 0 4 4 4 2 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|218883518|ref|YP_002427900.1| - 3.1e-06 27.5 12.7 0.00081 19.7 1.8 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|218883518|ref|YP_002427900.1| - 4.2e-06 25.4 4.6 9.7e-05 20.9 0.2 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_7 PF13241.1 gi|218883518|ref|YP_002427900.1| - 1e-05 25.6 1.5 0.15 12.3 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding ApbA PF02558.11 gi|218883518|ref|YP_002427900.1| - 0.00037 19.9 5.7 0.024 14.0 0.9 2.5 2 1 0 2 2 2 2 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|218883518|ref|YP_002427900.1| - 0.00071 19.6 2.2 0.17 11.9 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|218883518|ref|YP_002427900.1| - 0.013 14.4 3.8 0.015 14.2 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein ELFV_dehydrog PF00208.16 gi|218883518|ref|YP_002427900.1| - 0.034 13.7 2.7 2.6 7.5 0.2 2.2 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|218883518|ref|YP_002427900.1| - 0.044 13.1 3.8 2.8 7.2 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.12 gi|218883518|ref|YP_002427900.1| - 0.082 13.3 2.6 0.85 10.0 0.7 3.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Amino_oxidase PF01593.19 gi|218883518|ref|YP_002427900.1| - 0.12 11.3 3.6 2.7 6.9 0.4 2.7 3 1 1 4 4 3 0 Flavin containing amine oxidoreductase ThiF PF00899.16 gi|218883518|ref|YP_002427900.1| - 0.25 11.1 9.1 1.5 8.6 0.8 2.8 3 0 0 3 3 2 0 ThiF family AlaDh_PNT_C PF01262.16 gi|218883518|ref|YP_002427900.1| - 0.31 10.6 3.0 2.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|218883518|ref|YP_002427900.1| - 0.51 10.3 4.9 8 6.4 0.4 2.4 2 0 0 2 2 2 0 NADH(P)-binding 3HCDH_N PF02737.13 gi|218883518|ref|YP_002427900.1| - 0.55 9.8 8.1 3.1 7.4 0.2 2.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|218883518|ref|YP_002427900.1| - 1.4 8.6 6.8 3.1 7.5 0.1 3.5 4 0 0 4 4 4 0 FAD-NAD(P)-binding Fer4 PF00037.22 gi|218883519|ref|YP_002427901.1| - 2.1e-11 42.9 15.2 1.6e-07 30.5 2.5 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218883519|ref|YP_002427901.1| - 5.1e-08 33.1 9.4 8.2e-08 32.5 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|218883519|ref|YP_002427901.1| - 2.2e-07 30.5 7.3 4.2e-07 29.6 5.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218883519|ref|YP_002427901.1| - 1.1e-06 28.2 14.2 0.00028 20.6 1.7 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|218883519|ref|YP_002427901.1| - 4.1e-06 27.4 7.3 0.0076 16.9 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|218883519|ref|YP_002427901.1| - 5.7e-06 25.9 15.6 0.00062 19.5 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218883519|ref|YP_002427901.1| - 7.5e-06 26.1 9.9 1.5e-05 25.1 6.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218883519|ref|YP_002427901.1| - 3e-05 23.9 10.8 0.0014 18.7 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218883519|ref|YP_002427901.1| - 5.2e-05 23.0 20.3 0.0006 19.6 7.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|218883519|ref|YP_002427901.1| - 0.00016 21.6 6.9 0.0018 18.2 0.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218883519|ref|YP_002427901.1| - 0.00035 21.0 0.2 0.00035 21.0 0.1 2.8 2 2 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|218883519|ref|YP_002427901.1| - 0.0064 16.8 6.9 0.37 11.2 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|218883519|ref|YP_002427901.1| - 0.013 15.8 0.2 0.013 15.8 0.1 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|218883519|ref|YP_002427901.1| - 0.028 14.7 10.0 0.036 14.4 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218883519|ref|YP_002427901.1| - 0.03 14.8 17.1 0.28 11.8 1.9 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|218883519|ref|YP_002427901.1| - 0.18 11.7 2.4 0.48 10.3 1.8 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer2_BFD PF04324.10 gi|218883520|ref|YP_002427902.1| - 1.6e-09 37.6 1.3 2e-09 37.3 0.9 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain DAO PF01266.19 gi|218883521|ref|YP_002427903.1| - 2.5e-72 243.7 0.0 2.9e-72 243.5 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|218883521|ref|YP_002427903.1| - 5.2e-08 32.1 0.0 1e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|218883521|ref|YP_002427903.1| - 2.5e-07 29.5 0.2 0.0053 15.2 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_9 PF13454.1 gi|218883521|ref|YP_002427903.1| - 8.4e-07 28.8 0.2 0.0032 17.2 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|218883521|ref|YP_002427903.1| - 4.3e-06 26.9 0.0 0.0044 17.1 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|218883521|ref|YP_002427903.1| - 5.1e-06 26.5 2.6 0.00016 21.6 1.8 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|218883521|ref|YP_002427903.1| - 1.2e-05 24.5 0.2 2.2e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|218883521|ref|YP_002427903.1| - 0.0021 18.0 0.2 0.0055 16.7 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|218883521|ref|YP_002427903.1| - 0.0051 15.9 1.2 0.011 14.8 0.1 1.9 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.2 gi|218883521|ref|YP_002427903.1| - 0.0054 15.8 0.3 0.01 14.9 0.2 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|218883521|ref|YP_002427903.1| - 0.01 16.1 1.9 0.11 12.9 0.2 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|218883521|ref|YP_002427903.1| - 0.022 14.8 0.2 0.044 13.8 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|218883521|ref|YP_002427903.1| - 0.035 13.9 0.2 0.086 12.6 0.1 1.7 1 0 0 1 1 1 0 ThiF family GIDA PF01134.17 gi|218883521|ref|YP_002427903.1| - 0.052 12.4 0.6 1.9 7.2 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|218883521|ref|YP_002427903.1| - 0.076 13.2 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|218883521|ref|YP_002427903.1| - 0.16 10.5 0.8 0.21 10.1 0.2 1.5 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|218883521|ref|YP_002427903.1| - 0.17 10.8 0.5 3.3 6.5 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein TrkA_N PF02254.13 gi|218883521|ref|YP_002427903.1| - 0.25 11.3 1.6 3.3 7.7 0.3 2.4 2 0 0 2 2 2 0 TrkA-N domain MoaE PF02391.12 gi|218883522|ref|YP_002427904.1| - 1.4e-22 79.6 0.1 1.7e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 MoaE protein OKR_DC_1_N PF03709.10 gi|218883522|ref|YP_002427904.1| - 0.048 13.7 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ThiS PF02597.15 gi|218883523|ref|YP_002427905.1| - 1.1e-12 48.1 0.0 1.3e-12 47.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|218883523|ref|YP_002427905.1| - 0.00065 19.1 0.0 0.002 17.6 0.0 1.7 2 0 0 2 2 2 1 Mut7-C ubiquitin TGS PF02824.16 gi|218883523|ref|YP_002427905.1| - 0.0017 18.1 0.1 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 TGS domain ThiS-like PF14453.1 gi|218883523|ref|YP_002427905.1| - 0.0064 16.3 0.1 0.034 13.9 0.0 1.9 1 1 0 1 1 1 1 ThiS-like ubiquitin TOBE_3 PF12857.2 gi|218883523|ref|YP_002427905.1| - 0.073 12.9 0.1 6 6.7 0.0 2.2 2 0 0 2 2 2 0 TOBE-like domain MoaC PF01967.16 gi|218883524|ref|YP_002427906.1| - 6.3e-44 148.9 1.1 7.1e-44 148.7 0.8 1.0 1 0 0 1 1 1 1 MoaC family Radical_SAM PF04055.16 gi|218883525|ref|YP_002427907.1| - 2.3e-20 73.3 0.4 9.3e-20 71.4 0.2 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|218883525|ref|YP_002427907.1| - 4.9e-18 65.0 0.0 7.1e-18 64.5 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|218883525|ref|YP_002427907.1| - 1.4e-07 31.5 0.0 3.2e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|218883525|ref|YP_002427907.1| - 4e-06 26.9 0.0 8.1e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ABC_tran PF00005.22 gi|218883526|ref|YP_002427908.1| - 4.2e-29 101.5 0.0 6.2e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883526|ref|YP_002427908.1| - 2.1e-16 60.7 0.7 2.5e-07 30.9 0.1 2.4 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|218883526|ref|YP_002427908.1| - 6.9e-07 28.6 0.2 0.0076 15.3 0.2 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|218883526|ref|YP_002427908.1| - 7.8e-06 26.3 1.0 1.7e-05 25.2 0.7 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|218883526|ref|YP_002427908.1| - 0.0003 19.5 0.1 0.0032 16.1 0.2 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|218883526|ref|YP_002427908.1| - 0.0014 18.6 0.1 0.049 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|218883526|ref|YP_002427908.1| - 0.0015 18.0 0.1 0.0035 16.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|218883526|ref|YP_002427908.1| - 0.0015 18.0 0.0 0.15 11.4 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|218883526|ref|YP_002427908.1| - 0.0028 17.8 0.0 0.024 14.8 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|218883526|ref|YP_002427908.1| - 0.004 17.9 0.1 0.022 15.5 0.0 2.2 1 1 1 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|218883526|ref|YP_002427908.1| - 0.0095 15.6 0.1 0.022 14.4 0.0 1.6 2 0 0 2 2 1 1 Archaeal ATPase SMC_N PF02463.14 gi|218883526|ref|YP_002427908.1| - 0.011 14.9 0.3 0.053 12.7 0.2 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|218883526|ref|YP_002427908.1| - 0.012 15.5 0.0 0.043 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|218883526|ref|YP_002427908.1| - 0.017 15.2 0.3 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|218883526|ref|YP_002427908.1| - 0.02 13.8 0.1 0.032 13.1 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein MutS_V PF00488.16 gi|218883526|ref|YP_002427908.1| - 0.035 13.5 0.2 0.069 12.5 0.0 1.5 2 0 0 2 2 1 0 MutS domain V ATP-synt_ab PF00006.20 gi|218883526|ref|YP_002427908.1| - 0.041 13.3 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|218883526|ref|YP_002427908.1| - 0.048 13.0 0.0 0.17 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|218883526|ref|YP_002427908.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain RecA PF00154.16 gi|218883526|ref|YP_002427908.1| - 0.09 11.8 0.0 0.56 9.2 0.0 1.9 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Zeta_toxin PF06414.7 gi|218883526|ref|YP_002427908.1| - 0.095 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|218883526|ref|YP_002427908.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|218883526|ref|YP_002427908.1| - 0.12 12.1 0.1 0.31 10.8 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain BPD_transp_1 PF00528.17 gi|218883527|ref|YP_002427909.1| - 2.8e-17 62.8 19.7 2.8e-17 62.8 13.7 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UPF0154 PF03672.8 gi|218883527|ref|YP_002427909.1| - 0.016 14.8 0.1 0.039 13.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) HAMP PF00672.20 gi|218883527|ref|YP_002427909.1| - 0.44 10.7 0.1 0.44 10.7 0.1 3.2 4 0 0 4 4 4 0 HAMP domain SBP_bac_11 PF13531.1 gi|218883528|ref|YP_002427910.1| - 3.1e-31 108.7 0.0 3.9e-31 108.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|218883528|ref|YP_002427910.1| - 9.1e-05 22.3 0.0 0.00021 21.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|218883528|ref|YP_002427910.1| - 0.0095 15.3 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|218883528|ref|YP_002427910.1| - 0.018 14.1 0.0 0.34 9.9 0.0 2.0 2 0 0 2 2 2 0 LysR substrate binding domain MoCF_biosynth PF00994.19 gi|218883529|ref|YP_002427911.1| - 1.6e-17 63.2 0.5 2.5e-17 62.6 0.4 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF89 PF01937.14 gi|218883530|ref|YP_002427912.1| - 3.2e-35 121.5 0.0 5.2e-35 120.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF89 DUF2314 PF10077.4 gi|218883530|ref|YP_002427912.1| - 0.053 13.5 0.0 0.089 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2314) HTH_24 PF13412.1 gi|218883531|ref|YP_002427913.1| - 0.26 10.7 2.5 0.5 9.7 0.2 2.6 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3323 PF11796.3 gi|218883532|ref|YP_002427914.1| - 0.094 12.0 0.5 2.3 7.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function N-terminus (DUF3323) YtxH PF12732.2 gi|218883532|ref|YP_002427914.1| - 0.15 12.4 0.5 22 5.4 0.1 2.2 2 0 0 2 2 2 0 YtxH-like protein MazG-like PF12643.2 gi|218883532|ref|YP_002427914.1| - 0.98 9.3 3.8 2 8.3 0.5 2.4 1 1 1 2 2 2 0 MazG-like family SIS PF01380.17 gi|218883533|ref|YP_002427915.1| - 1.9e-19 69.5 0.0 4.9e-19 68.2 0.0 1.7 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.1 gi|218883533|ref|YP_002427915.1| - 4.3e-15 55.6 1.7 6.8e-10 38.7 0.3 2.2 1 1 1 2 2 2 2 SIS domain 2-Hacid_dh_C PF02826.14 gi|218883533|ref|YP_002427915.1| - 0.0059 15.7 0.6 1.3 8.1 0.0 2.1 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|218883533|ref|YP_002427915.1| - 0.079 12.5 0.0 4.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PRMT5 PF05185.11 gi|218883533|ref|YP_002427915.1| - 0.17 10.8 1.9 1.6 7.5 0.0 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase Radical_SAM PF04055.16 gi|218883534|ref|YP_002427916.1| - 2.1e-07 31.2 0.0 4.7e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|218883534|ref|YP_002427916.1| - 0.00095 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) ARID PF01388.16 gi|218883534|ref|YP_002427916.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 ARID/BRIGHT DNA binding domain zf-ZPR1 PF03367.8 gi|218883535|ref|YP_002427917.1| - 2.3e-33 114.6 0.0 2.7e-33 114.4 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|218883535|ref|YP_002427917.1| - 0.024 14.9 0.2 0.049 13.9 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|218883535|ref|YP_002427917.1| - 0.074 12.3 0.6 4.4 6.6 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|218883535|ref|YP_002427917.1| - 0.08 12.9 2.1 0.73 9.9 0.1 2.8 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|218883535|ref|YP_002427917.1| - 0.085 12.3 0.9 0.27 10.7 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|218883535|ref|YP_002427917.1| - 0.21 10.8 1.7 11 5.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|218883535|ref|YP_002427917.1| - 0.27 11.1 1.7 4.5 7.2 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin RNA_POL_M_15KD PF02150.11 gi|218883535|ref|YP_002427917.1| - 0.28 10.9 6.5 1 9.0 0.2 3.1 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Peptidase_M29 PF02073.10 gi|218883536|ref|YP_002427918.1| - 6e-113 377.6 0.0 6.7e-113 377.4 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) PsbP PF01789.11 gi|218883536|ref|YP_002427918.1| - 0.011 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 PsbP Ferritin PF00210.19 gi|218883537|ref|YP_002427919.1| - 4.6e-33 113.9 3.1 5.3e-33 113.7 2.1 1.0 1 0 0 1 1 1 1 Ferritin-like domain CARD PF00619.16 gi|218883537|ref|YP_002427919.1| - 3.9e-05 23.4 0.0 8.6e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Caspase recruitment domain Rubrerythrin PF02915.12 gi|218883537|ref|YP_002427919.1| - 9.9e-05 22.6 1.7 0.00014 22.2 1.2 1.2 1 0 0 1 1 1 1 Rubrerythrin RTTN_N PF14726.1 gi|218883537|ref|YP_002427919.1| - 0.087 13.4 0.1 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 Rotatin, an armadillo repeat protein, centriole functioning CitG PF01874.11 gi|218883538|ref|YP_002427920.1| - 2e-50 171.5 0.0 2.4e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Oxidored_molyb PF00174.14 gi|218883539|ref|YP_002427921.1| - 1.5e-39 135.1 0.0 2.1e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Curto_V2 PF07325.6 gi|218883540|ref|YP_002427922.1| - 0.099 12.3 0.3 0.18 11.4 0.1 1.5 1 1 0 1 1 1 0 Curtovirus V2 protein OTCace PF00185.19 gi|218883541|ref|YP_002427923.1| - 2.8e-40 137.7 0.0 7.2e-40 136.4 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|218883541|ref|YP_002427923.1| - 4.4e-35 120.4 0.0 7.6e-35 119.6 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltransf_31 PF13847.1 gi|218883541|ref|YP_002427923.1| - 0.033 13.7 0.0 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Phage_Cox PF10743.4 gi|218883541|ref|YP_002427923.1| - 0.039 13.9 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Regulatory phage protein cox SBP_bac_5 PF00496.17 gi|218883542|ref|YP_002427924.1| - 8.8e-73 245.2 2.2 1.1e-72 245.0 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|218883543|ref|YP_002427925.1| - 2e-28 99.1 16.2 2e-28 99.1 11.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|218883544|ref|YP_002427926.1| - 1.8e-26 92.7 15.0 1.8e-26 92.7 10.4 2.0 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|218883544|ref|YP_002427926.1| - 0.00079 18.7 0.1 0.00079 18.7 0.0 2.7 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|218883545|ref|YP_002427927.1| - 1e-25 90.6 0.0 1.4e-25 90.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|218883545|ref|YP_002427927.1| - 2.7e-15 56.4 0.0 5.8e-15 55.3 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|218883545|ref|YP_002427927.1| - 5.3e-13 49.5 0.4 2.9e-08 34.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|218883545|ref|YP_002427927.1| - 1.1e-05 24.7 0.0 1.9e-05 23.9 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|218883545|ref|YP_002427927.1| - 0.0002 21.4 0.1 0.00068 19.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|218883545|ref|YP_002427927.1| - 0.00039 19.8 0.0 0.00078 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|218883545|ref|YP_002427927.1| - 0.00051 20.1 0.2 0.0019 18.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|218883545|ref|YP_002427927.1| - 0.0013 17.8 0.7 0.77 8.7 0.4 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|218883545|ref|YP_002427927.1| - 0.0013 19.0 0.0 0.0017 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218883545|ref|YP_002427927.1| - 0.0028 17.1 0.0 0.0036 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|218883545|ref|YP_002427927.1| - 0.0038 16.4 0.0 0.006 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|218883545|ref|YP_002427927.1| - 0.011 15.8 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.1 gi|218883545|ref|YP_002427927.1| - 0.013 16.3 0.1 0.025 15.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|218883545|ref|YP_002427927.1| - 0.025 13.0 0.1 0.25 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|218883545|ref|YP_002427927.1| - 0.036 13.5 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|218883545|ref|YP_002427927.1| - 0.042 14.1 0.0 0.063 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|218883545|ref|YP_002427927.1| - 0.06 13.2 0.1 0.089 12.7 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|218883545|ref|YP_002427927.1| - 0.12 11.5 0.0 0.71 9.0 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.13 gi|218883545|ref|YP_002427927.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Arch_ATPase PF01637.13 gi|218883545|ref|YP_002427927.1| - 0.14 11.8 0.1 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|218883545|ref|YP_002427927.1| - 0.15 10.5 0.2 5.2 5.5 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|218883546|ref|YP_002427928.1| - 3.5e-33 114.7 0.0 5.4e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883546|ref|YP_002427928.1| - 6.8e-15 55.7 1.4 2.2e-08 34.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|218883546|ref|YP_002427928.1| - 1.6e-06 27.7 0.6 0.0011 18.4 0.3 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|218883546|ref|YP_002427928.1| - 3.4e-06 26.3 0.7 0.027 13.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|218883546|ref|YP_002427928.1| - 0.0002 20.6 0.4 0.0086 15.3 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|218883546|ref|YP_002427928.1| - 0.00026 20.4 0.0 0.00045 19.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|218883546|ref|YP_002427928.1| - 0.00026 21.1 1.6 0.0025 17.9 1.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|218883546|ref|YP_002427928.1| - 0.00042 20.3 0.2 0.00063 19.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|218883546|ref|YP_002427928.1| - 0.00057 18.8 0.1 0.001 18.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|218883546|ref|YP_002427928.1| - 0.00068 19.3 0.0 0.002 17.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|218883546|ref|YP_002427928.1| - 0.00078 19.1 0.1 0.0028 17.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Pox_A32 PF04665.7 gi|218883546|ref|YP_002427928.1| - 0.0015 17.8 0.1 0.0055 16.0 0.0 1.8 2 0 0 2 2 2 1 Poxvirus A32 protein oligo_HPY PF08352.7 gi|218883546|ref|YP_002427928.1| - 0.0016 18.7 0.0 0.0026 18.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_5 PF07728.9 gi|218883546|ref|YP_002427928.1| - 0.0019 17.9 1.2 0.036 13.8 0.0 2.5 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|218883546|ref|YP_002427928.1| - 0.0024 17.5 0.1 0.0048 16.6 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|218883546|ref|YP_002427928.1| - 0.0025 18.1 0.0 0.0031 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|218883546|ref|YP_002427928.1| - 0.0026 16.9 0.2 0.0043 16.2 0.0 1.5 2 0 0 2 2 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|218883546|ref|YP_002427928.1| - 0.0031 16.9 0.6 0.017 14.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|218883546|ref|YP_002427928.1| - 0.0044 16.5 0.0 0.0072 15.8 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family Miro PF08477.8 gi|218883546|ref|YP_002427928.1| - 0.0046 17.4 0.1 0.0077 16.7 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein cobW PF02492.14 gi|218883546|ref|YP_002427928.1| - 0.0058 16.1 0.0 0.0096 15.3 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|218883546|ref|YP_002427928.1| - 0.0059 16.3 0.3 0.0072 16.0 0.0 1.4 2 0 0 2 2 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|218883546|ref|YP_002427928.1| - 0.01 16.6 0.1 0.031 15.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|218883546|ref|YP_002427928.1| - 0.011 16.0 1.4 0.042 14.1 0.5 2.4 2 1 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|218883546|ref|YP_002427928.1| - 0.017 14.5 0.4 0.057 12.9 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Mg_chelatase PF01078.16 gi|218883546|ref|YP_002427928.1| - 0.021 13.9 0.0 0.047 12.8 0.0 1.6 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|218883546|ref|YP_002427928.1| - 0.023 13.1 0.1 1.6 7.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|218883546|ref|YP_002427928.1| - 0.026 14.0 0.2 0.26 10.7 0.1 2.0 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF87 PF01935.12 gi|218883546|ref|YP_002427928.1| - 0.029 14.1 0.2 0.069 12.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|218883546|ref|YP_002427928.1| - 0.032 14.1 0.0 0.054 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|218883546|ref|YP_002427928.1| - 0.033 13.7 0.0 0.097 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|218883546|ref|YP_002427928.1| - 0.039 12.5 0.2 4.1 5.8 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|218883546|ref|YP_002427928.1| - 0.059 13.5 0.3 0.51 10.5 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|218883546|ref|YP_002427928.1| - 0.071 12.7 0.2 0.2 11.3 0.1 1.8 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|218883546|ref|YP_002427928.1| - 0.08 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|218883546|ref|YP_002427928.1| - 0.082 12.8 0.1 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Sigma54_activat PF00158.21 gi|218883546|ref|YP_002427928.1| - 0.086 12.3 0.1 0.4 10.1 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|218883546|ref|YP_002427928.1| - 0.09 12.4 0.8 0.24 11.1 0.1 1.9 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.17 gi|218883546|ref|YP_002427928.1| - 0.093 11.5 0.1 0.93 8.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain G-alpha PF00503.15 gi|218883546|ref|YP_002427928.1| - 0.096 11.3 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.1 gi|218883546|ref|YP_002427928.1| - 0.1 12.1 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain DBI_PRT PF02277.12 gi|218883546|ref|YP_002427928.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyltransferase DUF3987 PF13148.1 gi|218883546|ref|YP_002427928.1| - 0.14 10.7 0.0 0.27 9.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Zeta_toxin PF06414.7 gi|218883546|ref|YP_002427928.1| - 0.14 11.2 0.0 0.28 10.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin tRNA-synt_2d PF01409.15 gi|218883548|ref|YP_002427930.1| - 8.9e-79 264.1 0.0 1.2e-78 263.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|218883548|ref|YP_002427930.1| - 1.3e-06 27.3 2.6 0.0026 16.5 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) Fer4_12 PF13353.1 gi|218883549|ref|YP_002427931.1| - 7.7e-05 22.8 0.0 0.00015 21.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|218883549|ref|YP_002427931.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.5 2 0 0 2 2 2 0 Radical SAM superfamily Robl_LC7 PF03259.12 gi|218883549|ref|YP_002427931.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Roadblock/LC7 domain Fer4_14 PF13394.1 gi|218883549|ref|YP_002427931.1| - 0.12 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain QueT PF06177.6 gi|218883550|ref|YP_002427932.1| - 8.2e-32 110.2 16.0 9.8e-32 110.0 11.1 1.0 1 0 0 1 1 1 1 QueT transporter ABC_tran PF00005.22 gi|218883551|ref|YP_002427933.1| - 3.1e-22 79.3 0.0 4.1e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883551|ref|YP_002427933.1| - 2.9e-11 43.8 0.7 4.2e-06 26.9 0.3 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|218883551|ref|YP_002427933.1| - 1.2e-09 37.7 0.0 2.2e-08 33.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|218883551|ref|YP_002427933.1| - 1.8e-06 27.3 0.0 0.00029 20.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|218883551|ref|YP_002427933.1| - 6e-06 26.7 0.0 7.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|218883551|ref|YP_002427933.1| - 0.00011 21.6 0.1 0.00023 20.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|218883551|ref|YP_002427933.1| - 0.0033 16.6 0.0 0.0055 15.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|218883551|ref|YP_002427933.1| - 0.011 14.9 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|218883551|ref|YP_002427933.1| - 0.015 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|218883551|ref|YP_002427933.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|218883551|ref|YP_002427933.1| - 0.026 14.5 0.1 0.029 14.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain DLIC PF05783.6 gi|218883551|ref|YP_002427933.1| - 0.055 12.1 0.0 0.072 11.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_10 PF12846.2 gi|218883551|ref|YP_002427933.1| - 0.057 12.8 0.0 0.15 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|218883551|ref|YP_002427933.1| - 0.07 13.9 0.2 0.15 12.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|218883551|ref|YP_002427933.1| - 0.072 13.2 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|218883551|ref|YP_002427933.1| - 0.078 12.3 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|218883551|ref|YP_002427933.1| - 0.094 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|218883551|ref|YP_002427933.1| - 0.11 12.2 0.1 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|218883551|ref|YP_002427933.1| - 0.11 11.9 0.1 0.2 11.1 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|218883551|ref|YP_002427933.1| - 0.12 12.9 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|218883551|ref|YP_002427933.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|218883551|ref|YP_002427933.1| - 0.14 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_22 PF13401.1 gi|218883551|ref|YP_002427933.1| - 0.14 12.3 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain RHD3 PF05879.7 gi|218883552|ref|YP_002427934.1| - 2.8 5.7 5.2 3.8 5.3 3.6 1.1 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) DUF4227 PF14004.1 gi|218883552|ref|YP_002427934.1| - 3.8 7.4 8.2 0.46 10.3 1.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4227) Adenine_deam_C PF13382.1 gi|218883553|ref|YP_002427935.1| - 1.6e-57 193.3 0.3 3.7e-57 192.2 0.1 1.7 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|218883553|ref|YP_002427935.1| - 1.4e-31 110.3 0.0 2.5e-30 106.2 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|218883553|ref|YP_002427935.1| - 3.1e-11 42.9 0.7 3.1e-11 42.9 0.5 2.4 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|218883553|ref|YP_002427935.1| - 2.7e-10 40.7 0.0 4.7e-05 23.5 0.0 2.2 1 1 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|218883553|ref|YP_002427935.1| - 7.1e-06 25.4 0.2 0.022 13.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.15 gi|218883554|ref|YP_002427936.1| - 6.3e-50 170.6 0.1 8.5e-50 170.2 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|218883554|ref|YP_002427936.1| - 4e-14 53.3 0.0 8e-13 49.0 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|218883554|ref|YP_002427936.1| - 1.5e-11 44.1 0.6 1.4e-08 34.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|218883554|ref|YP_002427936.1| - 3.1e-11 42.9 0.0 1.2e-10 41.0 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Aminotran_5 PF00266.14 gi|218883556|ref|YP_002427938.1| - 1.2e-143 478.3 0.0 1.4e-143 478.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|218883556|ref|YP_002427938.1| - 4.7e-10 39.0 0.0 7.3e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|218883556|ref|YP_002427938.1| - 1.7e-05 23.2 0.0 0.00013 20.3 0.0 2.2 3 0 0 3 3 3 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|218883556|ref|YP_002427938.1| - 5.3e-05 22.5 0.0 6.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|218883556|ref|YP_002427938.1| - 0.022 13.5 0.0 0.038 12.7 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase OrfB_Zn_ribbon PF07282.6 gi|218883557|ref|YP_002427939.1| - 4.7e-20 71.0 0.0 9.1e-20 70.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Resolvase PF00239.16 gi|218883558|ref|YP_002427940.1| - 3.1e-20 72.4 0.7 5.4e-20 71.6 0.4 1.5 1 1 1 2 2 2 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218883558|ref|YP_002427940.1| - 3.2e-06 27.2 0.0 7.5e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218883558|ref|YP_002427940.1| - 0.015 14.8 0.3 0.081 12.5 0.0 2.3 3 0 0 3 3 3 0 MerR family regulatory protein HTH_23 PF13384.1 gi|218883558|ref|YP_002427940.1| - 0.035 13.7 0.0 0.093 12.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MerR_1 PF13411.1 gi|218883558|ref|YP_002427940.1| - 0.038 13.7 0.0 0.087 12.6 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|218883558|ref|YP_002427940.1| - 0.042 13.8 0.8 0.079 12.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DEAD PF00270.24 gi|218883558|ref|YP_002427940.1| - 0.064 12.7 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase MFS_1 PF07690.11 gi|218883560|ref|YP_002427942.1| - 0.0011 17.7 1.8 0.0012 17.6 1.3 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1 PF07690.11 gi|218883561|ref|YP_002427943.1| - 0.00093 18.0 6.3 0.0013 17.5 4.4 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|218883561|ref|YP_002427943.1| - 0.0096 14.0 0.8 0.011 13.8 0.5 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector UPF0066 PF01980.11 gi|218883562|ref|YP_002427944.1| - 1.4e-38 131.5 0.0 1.8e-38 131.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 CBS PF00571.23 gi|218883563|ref|YP_002427945.1| - 7.7e-35 118.4 2.1 4.7e-17 61.4 0.1 2.1 2 0 0 2 2 2 2 CBS domain Glyco_hydro_1 PF00232.13 gi|218883564|ref|YP_002427946.1| - 2.6e-79 266.5 5.2 2.4e-78 263.3 3.6 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|218883564|ref|YP_002427946.1| - 0.00018 20.7 0.1 0.00028 20.2 0.0 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.10 gi|218883564|ref|YP_002427946.1| - 0.00025 20.2 0.0 0.00053 19.2 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase DUF333 PF03891.10 gi|218883564|ref|YP_002427946.1| - 0.11 12.3 0.1 0.31 10.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF333) CMD PF02627.15 gi|218883565|ref|YP_002427947.1| - 4e-19 68.2 0.1 5.1e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family COX7a PF02238.10 gi|218883565|ref|YP_002427947.1| - 0.13 12.0 0.1 0.26 11.0 0.1 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIa ABC2_membrane PF01061.19 gi|218883566|ref|YP_002427948.1| - 0.00029 20.0 23.3 0.00029 20.0 16.1 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|218883566|ref|YP_002427948.1| - 1.4 7.8 30.5 0.2 10.6 12.7 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|218883567|ref|YP_002427949.1| - 0.0003 19.9 17.0 0.0003 19.9 11.8 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|218883568|ref|YP_002427950.1| - 1.2e-27 96.8 0.0 2.2e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883568|ref|YP_002427950.1| - 3e-14 53.6 0.2 3.6e-12 46.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|218883568|ref|YP_002427950.1| - 1.9e-05 25.1 0.0 3.7e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|218883568|ref|YP_002427950.1| - 0.0008 18.8 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|218883568|ref|YP_002427950.1| - 0.0012 17.9 0.0 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|218883568|ref|YP_002427950.1| - 0.015 14.7 0.1 0.024 14.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.1 gi|218883568|ref|YP_002427950.1| - 0.016 15.9 0.2 0.039 14.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain MukB PF04310.7 gi|218883568|ref|YP_002427950.1| - 0.048 12.9 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 MukB N-terminal AAA_16 PF13191.1 gi|218883568|ref|YP_002427950.1| - 0.052 13.5 0.4 0.23 11.4 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain Arf PF00025.16 gi|218883568|ref|YP_002427950.1| - 0.068 12.4 0.2 2.3 7.4 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family UPF0079 PF02367.12 gi|218883568|ref|YP_002427950.1| - 0.076 12.6 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|218883568|ref|YP_002427950.1| - 0.093 13.0 0.3 0.17 12.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|218883568|ref|YP_002427950.1| - 0.11 11.1 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF1641 PF07849.6 gi|218883568|ref|YP_002427950.1| - 0.15 11.7 2.2 0.62 9.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1641) GalP_UDP_transf PF01087.17 gi|218883569|ref|YP_002427951.1| - 2e-25 89.9 0.0 3.9e-25 88.9 0.0 1.5 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|218883569|ref|YP_002427951.1| - 1.1e-12 47.8 0.0 1.9e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|218883569|ref|YP_002427951.1| - 2.6e-06 27.6 0.0 9e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|218883569|ref|YP_002427951.1| - 0.0012 19.3 0.0 0.035 14.6 0.0 2.2 2 0 0 2 2 2 1 HIT domain GHMP_kinases_N PF00288.21 gi|218883570|ref|YP_002427952.1| - 3.3e-15 55.8 3.0 1.4e-14 53.9 0.8 2.4 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|218883570|ref|YP_002427952.1| - 1.6e-13 50.6 0.0 3.6e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|218883570|ref|YP_002427952.1| - 6.7e-13 47.6 0.0 1.4e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Glyco_hydro_53 PF07745.8 gi|218883570|ref|YP_002427952.1| - 0.16 10.7 0.0 0.23 10.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 Epimerase PF01370.16 gi|218883571|ref|YP_002427953.1| - 7.2e-47 159.7 0.1 9.6e-47 159.3 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|218883571|ref|YP_002427953.1| - 8.4e-19 67.3 0.1 1e-18 67.0 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|218883571|ref|YP_002427953.1| - 5.2e-16 58.3 0.0 6.5e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|218883571|ref|YP_002427953.1| - 6.9e-16 57.9 0.1 7.4e-15 54.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|218883571|ref|YP_002427953.1| - 1e-11 44.2 0.0 3.7e-10 39.1 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|218883571|ref|YP_002427953.1| - 1.6e-09 38.0 0.0 2.7e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|218883571|ref|YP_002427953.1| - 3.4e-06 27.0 0.1 1.1e-05 25.3 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|218883571|ref|YP_002427953.1| - 0.0028 17.3 0.2 0.012 15.2 0.1 2.0 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|218883571|ref|YP_002427953.1| - 0.013 14.7 0.1 0.22 10.7 0.0 2.1 2 0 0 2 2 2 0 NmrA-like family Ldh_1_N PF00056.18 gi|218883571|ref|YP_002427953.1| - 0.044 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain DUF229 PF02995.12 gi|218883572|ref|YP_002427954.1| - 0.016 13.6 0.0 0.016 13.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF229) MgtE PF01769.11 gi|218883573|ref|YP_002427955.1| - 5.4e-15 55.8 30.7 1.1e-07 32.2 6.7 3.0 1 1 2 3 3 3 2 Divalent cation transporter TrkA_C PF02080.16 gi|218883574|ref|YP_002427956.1| - 1.2e-06 28.0 0.0 0.053 13.1 0.0 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|218883574|ref|YP_002427956.1| - 2.9e-05 24.4 1.8 0.22 11.9 0.0 2.7 3 0 0 3 3 3 2 PhoU domain PhoU_div PF01865.11 gi|218883574|ref|YP_002427956.1| - 0.001 18.2 0.4 0.054 12.6 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function DUF47 DUF1628 PF07790.6 gi|218883575|ref|YP_002427957.1| - 2.9e-05 24.7 5.7 2.9e-05 24.7 4.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) PA_decarbox PF05870.6 gi|218883575|ref|YP_002427957.1| - 0.062 12.7 0.3 0.081 12.3 0.2 1.2 1 0 0 1 1 1 0 Phenolic acid decarboxylase (PAD) Lum_binding PF00677.12 gi|218883575|ref|YP_002427957.1| - 0.16 11.8 3.4 1.6 8.6 0.2 2.2 2 0 0 2 2 2 0 Lumazine binding domain Lipocalin_6 PF13944.1 gi|218883575|ref|YP_002427957.1| - 0.21 11.7 4.8 0.56 10.3 3.3 1.6 1 1 0 1 1 1 0 Lipocalin-like domain TPPK_C PF12555.3 gi|218883575|ref|YP_002427957.1| - 0.33 10.6 7.4 0.77 9.5 5.1 1.7 1 1 0 1 1 1 0 Thiamine pyrophosphokinase C terminal DUF4307 PF14155.1 gi|218883577|ref|YP_002427959.1| - 0.19 11.5 1.1 5.8 6.7 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) ABC_tran PF00005.22 gi|218883579|ref|YP_002427961.1| - 1.3e-17 64.3 0.1 4.5e-17 62.6 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|218883579|ref|YP_002427961.1| - 7.8e-09 35.9 0.3 2.3e-05 24.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|218883579|ref|YP_002427961.1| - 0.00034 20.9 0.0 0.00045 20.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|218883579|ref|YP_002427961.1| - 0.00072 18.1 0.1 0.001 17.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|218883579|ref|YP_002427961.1| - 0.00078 19.4 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|218883579|ref|YP_002427961.1| - 0.00086 18.9 0.7 0.021 14.4 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|218883579|ref|YP_002427961.1| - 0.0017 18.4 0.0 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|218883579|ref|YP_002427961.1| - 0.0069 15.4 0.0 0.023 13.7 0.0 1.9 3 0 0 3 3 3 1 AAA ATPase domain AAA_29 PF13555.1 gi|218883579|ref|YP_002427961.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|218883579|ref|YP_002427961.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain SH3_3 PF08239.6 gi|218883579|ref|YP_002427961.1| - 0.011 15.8 0.6 0.13 12.4 0.1 2.4 1 1 1 2 2 2 0 Bacterial SH3 domain Arch_ATPase PF01637.13 gi|218883579|ref|YP_002427961.1| - 0.012 15.3 0.1 0.018 14.7 0.1 1.4 1 1 0 1 1 1 0 Archaeal ATPase T2SE PF00437.15 gi|218883579|ref|YP_002427961.1| - 0.016 14.1 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|218883579|ref|YP_002427961.1| - 0.022 14.4 0.0 0.07 12.8 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|218883579|ref|YP_002427961.1| - 0.025 15.3 0.0 0.043 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|218883579|ref|YP_002427961.1| - 0.034 14.3 0.0 0.083 13.0 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|218883579|ref|YP_002427961.1| - 0.04 13.3 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|218883579|ref|YP_002427961.1| - 0.043 12.7 0.1 0.076 11.9 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.17 gi|218883579|ref|YP_002427961.1| - 0.063 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|218883579|ref|YP_002427961.1| - 0.095 12.2 0.2 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|218883579|ref|YP_002427961.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|218883579|ref|YP_002427961.1| - 0.11 12.0 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|218883579|ref|YP_002427961.1| - 0.17 9.1 0.1 0.23 8.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.22 gi|218883580|ref|YP_002427962.1| - 4e-09 36.8 0.0 4.8e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|218883580|ref|YP_002427962.1| - 0.0001 22.6 0.0 0.00013 22.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|218883580|ref|YP_002427962.1| - 0.00063 18.7 0.0 0.00085 18.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|218883580|ref|YP_002427962.1| - 0.00079 18.8 0.1 0.0012 18.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|218883580|ref|YP_002427962.1| - 0.00084 20.1 0.5 0.0016 19.2 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|218883580|ref|YP_002427962.1| - 0.002 18.0 0.1 0.0038 17.1 0.0 1.4 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|218883580|ref|YP_002427962.1| - 0.0022 17.5 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF87 PF01935.12 gi|218883580|ref|YP_002427962.1| - 0.0022 17.8 0.3 0.0034 17.2 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_25 PF13481.1 gi|218883580|ref|YP_002427962.1| - 0.0034 16.8 0.0 0.0043 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218883580|ref|YP_002427962.1| - 0.0041 16.5 0.0 0.0045 16.4 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|218883580|ref|YP_002427962.1| - 0.019 14.9 0.4 0.03 14.3 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.12 gi|218883580|ref|YP_002427962.1| - 0.043 13.2 0.1 0.066 12.6 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|218883580|ref|YP_002427962.1| - 0.059 13.5 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|218883580|ref|YP_002427962.1| - 0.077 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation CobU PF02283.11 gi|218883580|ref|YP_002427962.1| - 0.078 12.3 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_19 PF13245.1 gi|218883580|ref|YP_002427962.1| - 0.089 12.5 0.1 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain Sigma54_activat PF00158.21 gi|218883580|ref|YP_002427962.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain KaiC PF06745.8 gi|218883580|ref|YP_002427962.1| - 0.16 11.0 0.1 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 KaiC Nitroreductase PF00881.19 gi|218883582|ref|YP_002427964.1| - 3e-33 114.9 0.0 4e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family PYC_OADA PF02436.13 gi|218883582|ref|YP_002427964.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Conserved carboxylase domain Rhomboid PF01694.17 gi|218883583|ref|YP_002427965.1| - 3.7e-33 114.6 19.9 3.7e-33 114.6 13.8 2.3 3 0 0 3 3 3 1 Rhomboid family HTH_33 PF13592.1 gi|218883583|ref|YP_002427965.1| - 0.0038 16.7 0.1 0.04 13.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix Alpha-amylase PF00128.19 gi|218883584|ref|YP_002427966.1| - 2.8e-65 220.7 0.0 4.5e-65 220.1 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|218883584|ref|YP_002427966.1| - 0.00019 21.5 0.0 0.0093 16.0 0.0 2.6 1 1 1 2 2 2 1 Alpha amylase, C-terminal all-beta domain Glyco_hydro_70 PF02324.11 gi|218883584|ref|YP_002427966.1| - 0.0012 16.6 0.0 0.0019 16.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 70 Cation_efflux PF01545.16 gi|218883585|ref|YP_002427967.1| - 1.2e-55 188.6 5.3 1.3e-55 188.4 3.7 1.0 1 0 0 1 1 1 1 Cation efflux family DUF2254 PF10011.4 gi|218883585|ref|YP_002427967.1| - 0.0079 14.7 0.5 0.078 11.4 0.0 2.2 2 1 0 2 2 2 1 Predicted membrane protein (DUF2254) PAP2 PF01569.16 gi|218883585|ref|YP_002427967.1| - 0.25 11.0 13.2 1.6 8.3 2.4 3.6 2 1 2 4 4 4 0 PAP2 superfamily TBP PF00352.16 gi|218883586|ref|YP_002427968.1| - 6.3e-62 204.9 0.2 2e-31 107.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|218883586|ref|YP_002427968.1| - 4.3e-05 23.4 0.0 0.16 12.0 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) DUF1390 PF07150.6 gi|218883586|ref|YP_002427968.1| - 0.011 15.1 0.0 0.087 12.1 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1390) Spore_YhaL PF14147.1 gi|218883586|ref|YP_002427968.1| - 0.07 12.5 0.5 0.26 10.7 0.1 2.1 3 0 0 3 3 3 0 Sporulation protein YhaL HMA PF00403.21 gi|218883586|ref|YP_002427968.1| - 0.32 11.1 2.7 3.2 7.9 0.3 2.6 3 0 0 3 3 3 0 Heavy-metal-associated domain DUF2070 PF09843.4 gi|218883587|ref|YP_002427969.1| - 9.7e-09 34.9 0.0 1.8e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) ATP_bind_1 PF03029.12 gi|218883589|ref|YP_002427971.1| - 1.6e-44 152.2 0.0 1.8e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|218883589|ref|YP_002427971.1| - 3.2e-05 23.4 0.1 1.4 8.3 0.0 3.6 3 1 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|218883589|ref|YP_002427971.1| - 5e-05 22.9 0.0 0.00013 21.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|218883589|ref|YP_002427971.1| - 0.00055 20.0 0.0 0.00082 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|218883589|ref|YP_002427971.1| - 0.0016 17.9 0.1 0.015 14.7 0.0 2.1 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|218883589|ref|YP_002427971.1| - 0.0025 17.8 0.0 0.0044 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|218883589|ref|YP_002427971.1| - 0.0026 18.5 0.0 0.0037 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|218883589|ref|YP_002427971.1| - 0.0045 16.9 0.0 0.012 15.5 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|218883589|ref|YP_002427971.1| - 0.007 16.0 0.0 0.073 12.7 0.0 2.1 1 1 0 1 1 1 1 NTPase Gtr1_RagA PF04670.7 gi|218883589|ref|YP_002427971.1| - 0.014 14.5 0.0 0.6 9.2 0.0 2.1 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_30 PF13604.1 gi|218883589|ref|YP_002427971.1| - 0.024 14.2 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|218883589|ref|YP_002427971.1| - 0.034 13.0 0.1 0.058 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|218883589|ref|YP_002427971.1| - 0.035 13.6 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|218883589|ref|YP_002427971.1| - 0.042 12.6 0.0 0.2 10.4 0.0 2.0 3 0 0 3 3 3 0 ArgK protein AAA_19 PF13245.1 gi|218883589|ref|YP_002427971.1| - 0.046 13.4 0.1 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Ras PF00071.17 gi|218883589|ref|YP_002427971.1| - 0.048 13.0 0.0 4.2 6.7 0.0 2.5 3 0 0 3 3 3 0 Ras family NACHT PF05729.7 gi|218883589|ref|YP_002427971.1| - 0.053 13.1 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|218883589|ref|YP_002427971.1| - 0.068 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|218883589|ref|YP_002427971.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|218883589|ref|YP_002427971.1| - 0.1 11.8 0.1 0.77 8.9 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|218883589|ref|YP_002427971.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|218883589|ref|YP_002427971.1| - 0.15 12.4 0.2 0.23 11.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|218883589|ref|YP_002427971.1| - 0.15 10.5 0.0 0.21 10.0 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_18 PF13238.1 gi|218883589|ref|YP_002427971.1| - 0.15 12.3 0.1 0.23 11.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|218883589|ref|YP_002427971.1| - 0.16 11.8 0.1 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DNA_ligase_A_M PF01068.16 gi|218883590|ref|YP_002427972.1| - 2.2e-57 193.6 0.3 3.2e-57 193.1 0.2 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|218883590|ref|YP_002427972.1| - 1.6e-49 168.1 0.1 3e-49 167.2 0.1 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|218883590|ref|YP_002427972.1| - 5.1e-28 97.3 0.0 2.1e-27 95.3 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|218883590|ref|YP_002427972.1| - 0.00089 18.8 0.6 0.041 13.5 0.0 2.8 3 0 0 3 3 3 1 DNA ligase OB-like domain Lon_C PF05362.8 gi|218883591|ref|YP_002427973.1| - 1.6e-07 30.8 0.4 3.1e-07 29.9 0.3 1.4 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain UDG PF03167.14 gi|218883592|ref|YP_002427974.1| - 3.9e-44 149.7 0.0 5e-44 149.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GtrA PF04138.9 gi|218883593|ref|YP_002427975.1| - 1.6e-18 66.7 5.5 2.4e-18 66.1 3.8 1.3 1 0 0 1 1 1 1 GtrA-like protein YcgL PF05166.8 gi|218883594|ref|YP_002427976.1| - 0.06 13.4 0.1 0.082 13.0 0.0 1.2 1 0 0 1 1 1 0 YcgL domain DUF553 PF04473.7 gi|218883596|ref|YP_002427978.1| - 4.8e-21 74.6 2.6 1.4e-20 73.1 0.1 2.6 2 1 0 2 2 2 1 Transglutaminase-like domain Transglut_core PF01841.14 gi|218883596|ref|YP_002427978.1| - 0.039 14.1 0.0 0.1 12.8 0.0 1.7 2 0 0 2 2 2 0 Transglutaminase-like superfamily SecD-TM1 PF13721.1 gi|218883596|ref|YP_002427978.1| - 0.17 12.1 2.9 0.32 11.2 0.1 2.5 2 1 0 2 2 2 0 SecD export protein N-terminal TM region SBP_bac_5 PF00496.17 gi|218883597|ref|YP_002427979.1| - 5.9e-60 203.0 15.7 1.3e-41 142.7 3.8 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Flp_N PF03930.9 gi|218883597|ref|YP_002427979.1| - 0.046 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Recombinase Flp protein N-terminus LysR_substrate PF03466.15 gi|218883597|ref|YP_002427979.1| - 0.074 12.1 0.0 1 8.4 0.0 2.5 2 1 0 3 3 3 0 LysR substrate binding domain Imm28 PF15574.1 gi|218883597|ref|YP_002427979.1| - 0.13 11.8 0.0 0.35 10.4 0.0 1.8 1 0 0 1 1 1 0 Immunity protein 28 BPD_transp_1 PF00528.17 gi|218883598|ref|YP_002427980.1| - 1.5e-39 135.4 18.2 1.5e-39 135.4 12.6 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|218883599|ref|YP_002427981.1| - 6.6e-32 110.5 14.7 6.6e-32 110.5 10.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|218883599|ref|YP_002427981.1| - 4.4e-05 22.7 0.7 4.4e-05 22.7 0.5 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C TraQ PF09679.5 gi|218883599|ref|YP_002427981.1| - 1.3 9.0 3.9 1.3 9.0 0.1 2.6 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin chaperone (TraQ) ABC_tran PF00005.22 gi|218883600|ref|YP_002427982.1| - 1.3e-25 90.3 0.0 1.8e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|218883600|ref|YP_002427982.1| - 3.7e-22 78.4 0.5 6.6e-22 77.6 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|218883600|ref|YP_002427982.1| - 9e-11 42.2 0.3 6.2e-09 36.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|218883600|ref|YP_002427982.1| - 6.4e-06 25.4 0.2 0.00039 19.6 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|218883600|ref|YP_002427982.1| - 2.1e-05 23.8 0.0 4.5e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|218883600|ref|YP_002427982.1| - 0.00047 20.2 2.5 0.014 15.4 1.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218883600|ref|YP_002427982.1| - 0.0014 18.0 0.0 0.32 10.3 0.0 2.5 1 1 1 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|218883600|ref|YP_002427982.1| - 0.0033 16.9 0.0 0.0059 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|218883600|ref|YP_002427982.1| - 0.0043 17.0 0.1 0.017 15.1 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|218883600|ref|YP_002427982.1| - 0.019 15.1 0.1 1.3 9.2 0.0 2.7 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|218883600|ref|YP_002427982.1| - 0.022 14.1 0.1 0.9 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|218883600|ref|YP_002427982.1| - 0.057 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.12 gi|218883600|ref|YP_002427982.1| - 0.068 12.9 0.1 0.42 10.3 0.0 2.1 2 1 1 3 3 3 0 Domain of unknown function DUF87 AAA_13 PF13166.1 gi|218883600|ref|YP_002427982.1| - 0.13 10.6 0.0 0.21 10.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|218883600|ref|YP_002427982.1| - 0.18 10.6 0.1 0.32 9.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|218883601|ref|YP_002427983.1| - 2.1e-35 122.0 0.0 2.7e-35 121.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|218883601|ref|YP_002427983.1| - 2.8e-21 75.6 0.3 5e-21 74.8 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|218883601|ref|YP_002427983.1| - 6.2e-13 49.3 0.7 1.2e-08 35.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|218883601|ref|YP_002427983.1| - 2.7e-05 24.3 0.1 9.4e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218883601|ref|YP_002427983.1| - 5.4e-05 22.7 0.2 0.026 13.9 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|218883601|ref|YP_002427983.1| - 0.00018 20.8 0.1 0.00074 18.8 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|218883601|ref|YP_002427983.1| - 0.0038 16.4 0.0 0.0096 15.1 0.0 1.6 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|218883601|ref|YP_002427983.1| - 0.0052 16.6 0.0 0.061 13.2 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|218883601|ref|YP_002427983.1| - 0.0084 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|218883601|ref|YP_002427983.1| - 0.016 15.2 0.5 0.038 13.9 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|218883601|ref|YP_002427983.1| - 0.025 13.6 0.1 0.49 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|218883601|ref|YP_002427983.1| - 0.035 13.2 0.1 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|218883601|ref|YP_002427983.1| - 0.044 12.2 0.0 0.48 8.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|218883601|ref|YP_002427983.1| - 0.048 13.0 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|218883601|ref|YP_002427983.1| - 0.069 13.3 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|218883601|ref|YP_002427983.1| - 0.077 12.0 0.4 0.76 8.8 0.1 2.1 2 0 0 2 2 2 0 KaiC AAA_5 PF07728.9 gi|218883601|ref|YP_002427983.1| - 0.098 12.3 0.2 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|218883601|ref|YP_002427983.1| - 0.11 12.8 1.4 0.26 11.6 0.9 1.6 1 1 0 1 1 1 0 AAA domain Acid_PPase PF12689.2 gi|218883603|ref|YP_002427985.1| - 0.025 14.2 0.0 0.027 14.1 0.0 1.0 1 0 0 1 1 1 0 Acid Phosphatase MFS_1 PF07690.11 gi|218883604|ref|YP_002427986.1| - 1.9e-33 115.6 32.5 1.9e-33 115.6 22.5 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|218883604|ref|YP_002427986.1| - 6.5e-09 34.8 25.1 0.00011 20.9 4.8 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|218883604|ref|YP_002427986.1| - 0.002 16.3 3.3 0.002 16.3 2.3 2.2 2 1 0 2 2 2 1 Transmembrane secretion effector DUF2427 PF10348.4 gi|218883604|ref|YP_002427986.1| - 3.6 7.1 16.2 0.99 9.0 0.2 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF2427) DUF4131 PF13567.1 gi|218883604|ref|YP_002427986.1| - 4.2 6.7 13.8 2.5 7.4 1.3 3.6 1 1 3 4 4 4 0 Domain of unknown function (DUF4131) DUF131 PF01998.12 gi|218883605|ref|YP_002427987.1| - 5.7e-12 44.8 14.5 5.7e-12 44.8 10.0 2.5 1 1 1 2 2 2 1 Protein of unknown function DUF131 zf-LITAF-like PF10601.4 gi|218883605|ref|YP_002427987.1| - 0.18 11.6 3.0 0.69 9.8 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF4149 PF13664.1 gi|218883605|ref|YP_002427987.1| - 0.22 11.6 3.4 0.73 9.9 2.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) DUF3671 PF12420.3 gi|218883605|ref|YP_002427987.1| - 0.53 10.2 2.5 0.87 9.5 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function ABC2_membrane_4 PF12730.2 gi|218883605|ref|YP_002427987.1| - 1.1 8.4 11.4 1.6 7.8 7.9 1.2 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4190 PF13828.1 gi|218883605|ref|YP_002427987.1| - 1.2 8.7 16.4 13 5.4 2.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4190) TctB PF07331.6 gi|218883605|ref|YP_002427987.1| - 1.2 8.7 12.0 12 5.5 8.3 2.0 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family SUR7 PF06687.7 gi|218883605|ref|YP_002427987.1| - 1.5 8.3 7.7 2.7 7.4 5.3 1.4 1 1 0 1 1 1 0 SUR7/PalI family DUF4401 PF14351.1 gi|218883605|ref|YP_002427987.1| - 2.4 7.0 12.6 2.7 6.9 8.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) Tetraspannin PF00335.15 gi|218883605|ref|YP_002427987.1| - 5.2 6.2 15.0 11 5.2 10.4 1.5 1 1 0 1 1 1 0 Tetraspanin family O-antigen_lig PF13425.1 gi|218883605|ref|YP_002427987.1| - 6.3 6.7 10.5 12 5.8 7.3 1.5 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF898 PF05987.8 gi|218883605|ref|YP_002427987.1| - 6.6 5.5 8.7 7.5 5.3 6.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) Claudin_2 PF13903.1 gi|218883605|ref|YP_002427987.1| - 7.9 6.1 11.7 62 3.2 8.1 1.9 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF202 PF02656.10 gi|218883605|ref|YP_002427987.1| - 8 6.7 8.7 1.1e+02 3.1 6.0 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF131 PF01998.12 gi|218883606|ref|YP_002427988.1| - 1.8e-09 36.8 4.5 1.8e-09 36.8 3.1 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 SPC12 PF06645.8 gi|218883606|ref|YP_002427988.1| - 0.0026 17.5 1.0 0.0029 17.3 0.1 1.5 2 0 0 2 2 2 1 Microsomal signal peptidase 12 kDa subunit (SPC12) SMP_2 PF10144.4 gi|218883606|ref|YP_002427988.1| - 0.0034 16.5 0.2 0.0051 15.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial virulence factor haemolysin DUF1517 PF07466.6 gi|218883606|ref|YP_002427988.1| - 0.016 14.2 0.8 0.016 14.2 0.6 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1517) ABC2_membrane_5 PF13346.1 gi|218883606|ref|YP_002427988.1| - 0.022 14.0 2.0 0.022 14.0 1.4 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein Claudin_2 PF13903.1 gi|218883606|ref|YP_002427988.1| - 0.053 13.2 5.2 0.16 11.6 3.6 1.7 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction NfeD PF01957.13 gi|218883606|ref|YP_002427988.1| - 0.054 13.6 4.3 0.069 13.2 3.0 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3273 PF11677.3 gi|218883606|ref|YP_002427988.1| - 0.14 11.4 5.1 0.34 10.1 3.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3273) UbiA PF01040.13 gi|218883606|ref|YP_002427988.1| - 0.24 10.5 5.6 0.27 10.4 3.9 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family TspO_MBR PF03073.10 gi|218883606|ref|YP_002427988.1| - 0.34 10.4 4.6 5.6 6.4 1.6 2.0 1 1 1 2 2 2 0 TspO/MBR family Pox_A14 PF05767.7 gi|218883606|ref|YP_002427988.1| - 0.95 9.4 8.0 0.67 9.9 1.2 2.1 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 DUF3487 PF11990.3 gi|218883606|ref|YP_002427988.1| - 3.1 7.2 4.5 0.79 9.1 1.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) MerC PF03203.9 gi|218883606|ref|YP_002427988.1| - 3.5 8.0 7.4 1.1 9.6 1.8 1.9 1 1 1 2 2 2 0 MerC mercury resistance protein Pyr_redox_2 PF07992.9 gi|218883607|ref|YP_002427989.1| - 2.9e-35 121.9 9.2 1.2e-32 113.4 6.4 3.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|218883607|ref|YP_002427989.1| - 3.6e-21 75.3 6.9 2.7e-19 69.3 0.4 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|218883607|ref|YP_002427989.1| - 1.3e-19 70.2 0.0 1.1e-18 67.3 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|218883607|ref|YP_002427989.1| - 2.3e-10 39.9 13.4 0.00021 20.3 0.7 3.5 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|218883607|ref|YP_002427989.1| - 3.6e-10 40.2 0.2 2.6e-06 27.6 0.1 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|218883607|ref|YP_002427989.1| - 3.2e-06 25.8 8.6 0.00085 17.9 0.0 3.5 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|218883607|ref|YP_002427989.1| - 6.9e-06 25.3 8.2 0.1 11.6 1.4 3.1 2 1 1 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|218883607|ref|YP_002427989.1| - 2.5e-05 23.5 4.9 7.8e-05 21.8 0.4 3.0 2 1 1 3 3 3 1 Thi4 family 3HCDH_N PF02737.13 gi|218883607|ref|YP_002427989.1| - 5.1e-05 22.9 2.6 0.014 15.0 0.1 2.6 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.17 gi|218883607|ref|YP_002427989.1| - 6.3e-05 22.0 0.3 6.3e-05 22.0 0.2 2.7 3 1 1 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|218883607|ref|YP_002427989.1| - 0.00013 20.9 0.8 0.00013 20.9 0.6 3.0 2 1 2 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|218883607|ref|YP_002427989.1| - 0.00041 19.5 0.2 0.00082 18.5 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|218883607|ref|YP_002427989.1| - 0.002 18.1 3.9 0.1 12.6 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|218883607|ref|YP_002427989.1| - 0.0067 16.2 5.5 0.0093 15.7 0.0 3.3 4 0 0 4 4 4 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|218883607|ref|YP_002427989.1| - 0.011 15.9 1.0 1.2 9.3 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|218883607|ref|YP_002427989.1| - 0.014 14.9 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|218883607|ref|YP_002427989.1| - 0.053 12.4 4.7 6 5.6 0.0 3.1 2 1 1 3 3 3 0 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|218883607|ref|YP_002427989.1| - 0.058 12.5 0.0 0.12 11.4 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PhoU_div PF01865.11 gi|218883607|ref|YP_002427989.1| - 0.16 11.0 0.1 1.3 8.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF47 TrkA_N PF02254.13 gi|218883607|ref|YP_002427989.1| - 0.21 11.6 1.5 0.57 10.2 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|218883607|ref|YP_002427989.1| - 0.74 9.1 4.3 7.5 5.8 0.2 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.9 gi|218883607|ref|YP_002427989.1| - 1.5 7.3 7.2 1.2 7.6 0.1 2.8 2 1 1 3 3 3 0 Tryptophan halogenase GDC-P PF02347.11 gi|218883608|ref|YP_002427990.1| - 1.8e-12 46.6 0.0 7.6e-11 41.3 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|218883608|ref|YP_002427990.1| - 5.5e-08 31.9 0.0 1.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|218883608|ref|YP_002427990.1| - 3.2e-05 23.0 0.0 6.1e-05 22.1 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|218883608|ref|YP_002427990.1| - 0.0043 16.2 0.0 0.0069 15.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|218883608|ref|YP_002427990.1| - 0.018 13.5 0.0 0.072 11.5 0.0 1.8 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain GDC-P PF02347.11 gi|218883609|ref|YP_002427991.1| - 4.3e-121 404.5 0.0 5.2e-121 404.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|218883609|ref|YP_002427991.1| - 6.2e-05 21.9 0.1 0.0002 20.2 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V 3A PF00803.13 gi|218883609|ref|YP_002427991.1| - 0.0038 16.3 0.0 0.0062 15.6 0.0 1.2 1 0 0 1 1 1 1 3A/RNA2 movement protein family HRDC PF00570.18 gi|218883609|ref|YP_002427991.1| - 0.13 11.9 0.3 0.36 10.5 0.2 1.7 1 0 0 1 1 1 0 HRDC domain GCV_T PF01571.16 gi|218883610|ref|YP_002427992.1| - 2.5e-47 160.9 0.0 3.4e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|218883610|ref|YP_002427992.1| - 2.7e-22 78.5 0.0 4.8e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SHMT PF00464.14 gi|218883611|ref|YP_002427993.1| - 5.9e-68 229.0 0.1 7.5e-68 228.7 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|218883611|ref|YP_002427993.1| - 6.4e-11 41.9 0.0 9.5e-11 41.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|218883611|ref|YP_002427993.1| - 2.3e-08 33.4 0.0 9.2e-08 31.4 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|218883611|ref|YP_002427993.1| - 2.1e-06 26.7 0.1 5e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|218883611|ref|YP_002427993.1| - 4.3e-05 22.7 0.5 7.1e-05 21.9 0.3 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|218883611|ref|YP_002427993.1| - 0.001 17.4 0.5 0.016 13.5 0.0 2.4 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DUF3469 PF11952.3 gi|218883611|ref|YP_002427993.1| - 0.0013 18.3 0.7 0.013 15.1 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3469) GCV_H PF01597.14 gi|218883612|ref|YP_002427994.1| - 2e-40 137.2 0.1 2.5e-40 136.9 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.1 gi|218883612|ref|YP_002427994.1| - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.17 gi|218883612|ref|YP_002427994.1| - 0.02 14.5 1.1 0.025 14.2 0.1 1.6 2 0 0 2 2 2 0 Biotin-requiring enzyme DeoC PF01791.4 gi|218883613|ref|YP_002427995.1| - 4.9e-42 143.8 1.5 5.5e-42 143.6 1.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|218883613|ref|YP_002427995.1| - 0.00027 20.0 1.2 0.00035 19.6 0.2 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|218883613|ref|YP_002427995.1| - 0.014 14.2 4.4 0.037 12.8 3.0 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Spermine_synth PF01564.12 gi|218883614|ref|YP_002427996.1| - 7.6e-64 214.9 0.0 9.8e-64 214.6 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|218883614|ref|YP_002427996.1| - 8.7e-07 28.9 0.0 1.6e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|218883614|ref|YP_002427996.1| - 6.4e-05 23.3 0.0 0.00015 22.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218883614|ref|YP_002427996.1| - 0.058 13.9 0.0 0.14 12.7 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|218883614|ref|YP_002427996.1| - 0.069 12.3 0.1 0.11 11.6 0.1 1.4 1 1 0 1 1 1 0 O-methyltransferase MTS PF05175.9 gi|218883614|ref|YP_002427996.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF43 PF01861.11 gi|218883614|ref|YP_002427996.1| - 0.1 11.5 0.1 0.53 9.2 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF43 DUF4350 PF14258.1 gi|218883615|ref|YP_002427997.1| - 0.0012 18.9 0.0 0.005 17.0 0.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4350) DUF4129 PF13559.1 gi|218883616|ref|YP_002427998.1| - 0.03 14.2 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) DUF1156 PF06634.7 gi|218883617|ref|YP_002427999.1| - 4.9e-20 71.0 0.2 4.9e-20 71.0 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.10 gi|218883617|ref|YP_002427999.1| - 0.0008 18.8 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_26 PF13659.1 gi|218883617|ref|YP_002427999.1| - 0.012 15.5 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain pKID PF02173.12 gi|218883617|ref|YP_002427999.1| - 0.058 12.6 0.8 0.11 11.7 0.6 1.5 1 0 0 1 1 1 0 pKID domain UPF0020 PF01170.13 gi|218883617|ref|YP_002427999.1| - 0.084 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|218883622|ref|YP_002428004.1| - 1.4e-06 28.1 0.0 2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|218883622|ref|YP_002428004.1| - 0.0001 21.6 0.1 0.11 11.7 0.0 2.1 2 0 0 2 2 2 2 O-methyltransferase Methyltransf_11 PF08241.7 gi|218883622|ref|YP_002428004.1| - 0.032 14.7 0.4 0.92 10.0 0.3 2.3 1 1 0 1 1 1 0 Methyltransferase domain Glyco_tranf_2_3 PF13641.1 gi|218883623|ref|YP_002428005.1| - 3.1e-10 40.2 1.7 3.7e-10 40.0 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|218883623|ref|YP_002428005.1| - 1.6e-06 27.9 0.0 6.9e-06 25.8 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|218883623|ref|YP_002428005.1| - 0.0046 16.2 0.0 0.0085 15.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|218883623|ref|YP_002428005.1| - 0.19 11.3 3.3 0.49 10.0 2.3 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Aldolase_II PF00596.16 gi|218883625|ref|YP_002428007.1| - 1.7e-46 158.1 0.2 2e-46 157.8 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain TFIIA_gamma_N PF02268.11 gi|218883625|ref|YP_002428007.1| - 0.096 12.2 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain Sterol_MT_C PF08498.5 gi|218883625|ref|YP_002428007.1| - 0.16 11.9 0.4 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 Sterol methyltransferase C-terminal Glycos_transf_1 PF00534.15 gi|218883627|ref|YP_002428009.1| - 8e-16 57.9 0.0 1.5e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|218883627|ref|YP_002428009.1| - 1.1e-15 57.9 0.3 8.6e-15 55.0 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 CitMHS PF03600.11 gi|218883629|ref|YP_002428011.1| - 2.6e-24 85.4 34.2 4.3e-24 84.7 19.4 2.0 1 1 0 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|218883629|ref|YP_002428011.1| - 5.3e-07 28.8 27.5 0.00011 21.2 6.1 3.7 1 1 1 4 4 4 3 Sodium:sulfate symporter transmembrane region Ninjurin PF04923.7 gi|218883629|ref|YP_002428011.1| - 0.52 10.0 4.5 0.82 9.4 0.8 2.8 2 0 0 2 2 2 0 Ninjurin DUF3397 PF11877.3 gi|218883629|ref|YP_002428011.1| - 2.1 8.3 23.4 0.78 9.7 3.1 5.5 3 2 1 5 5 5 0 Protein of unknown function (DUF3397) Dr_adhesin PF12393.3 gi|218883629|ref|YP_002428011.1| - 2.3 8.4 6.2 6.9 6.9 1.2 3.7 2 0 0 2 2 2 0 Dr family adhesin RNA_POL_M_15KD PF02150.11 gi|218883630|ref|YP_002428012.1| - 0.11 12.2 0.6 0.19 11.4 0.4 1.2 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Pkinase PF00069.20 gi|218883631|ref|YP_002428013.1| - 0.001 18.3 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|218883631|ref|YP_002428013.1| - 0.016 14.9 0.1 0.25 11.0 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family tRNA_NucTransf2 PF09249.6 gi|218883632|ref|YP_002428014.1| - 3.1e-36 123.7 0.0 5.8e-36 122.8 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|218883632|ref|YP_002428014.1| - 1.5e-09 38.0 0.1 6.3e-09 36.0 0.1 2.1 1 1 0 1 1 1 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|218883633|ref|YP_002428015.1| - 2.1e-29 101.3 0.0 1.4e-15 57.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|218883633|ref|YP_002428015.1| - 1.9e-09 37.5 0.0 8.7e-09 35.3 0.0 1.8 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.1 gi|218883633|ref|YP_002428015.1| - 5.5e-09 35.9 0.0 6.8e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AAA_18 PF13238.1 gi|218883634|ref|YP_002428016.1| - 2e-12 47.5 0.1 3e-12 46.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|218883634|ref|YP_002428016.1| - 7.7e-09 36.4 0.2 1.2e-08 35.7 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|218883634|ref|YP_002428016.1| - 9.9e-07 28.7 0.1 2e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|218883634|ref|YP_002428016.1| - 0.012 15.0 0.1 0.3 10.4 0.0 2.2 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.1 gi|218883634|ref|YP_002428016.1| - 0.029 14.3 0.0 0.053 13.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|218883634|ref|YP_002428016.1| - 0.056 12.5 0.5 0.5 9.4 0.2 2.3 1 1 1 2 2 2 0 Zeta toxin ABC_tran PF00005.22 gi|218883634|ref|YP_002428016.1| - 0.095 12.9 0.0 0.15 12.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|218883634|ref|YP_002428016.1| - 0.12 11.7 0.2 8 5.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF3987 PF13148.1 gi|218883634|ref|YP_002428016.1| - 0.14 10.7 0.0 0.19 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_19 PF13245.1 gi|218883634|ref|YP_002428016.1| - 0.19 11.5 0.5 0.92 9.3 0.1 2.1 2 1 0 2 2 2 0 Part of AAA domain RNA_binding PF01877.12 gi|218883635|ref|YP_002428017.1| - 4.3e-17 62.2 0.1 5.7e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 RNA binding PCNA_N PF00705.13 gi|218883636|ref|YP_002428018.1| - 6.7e-15 54.7 0.8 1.9e-14 53.2 0.1 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|218883636|ref|YP_002428018.1| - 2.7e-06 26.6 1.0 3.5e-06 26.3 0.2 1.6 2 0 0 2 2 2 1 Rad9 PCNA_C PF02747.10 gi|218883636|ref|YP_002428018.1| - 6.3e-06 26.1 2.1 0.00036 20.4 0.3 2.5 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.7 gi|218883636|ref|YP_002428018.1| - 0.025 13.5 0.1 0.054 12.4 0.1 1.7 1 1 0 1 1 1 0 Hus1-like protein PhoH PF02562.11 gi|218883638|ref|YP_002428020.1| - 3e-43 147.4 0.0 3.9e-43 147.0 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|218883638|ref|YP_002428020.1| - 5.3e-09 35.7 0.0 8.1e-07 28.7 0.0 2.8 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|218883638|ref|YP_002428020.1| - 1e-06 28.2 2.5 0.00034 20.1 0.3 2.8 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|218883638|ref|YP_002428020.1| - 2e-05 24.1 2.5 0.0032 17.0 1.0 2.7 2 0 0 2 2 2 1 KH domain KH_2 PF07650.12 gi|218883638|ref|YP_002428020.1| - 4.5e-05 22.9 1.9 0.00079 18.9 0.2 2.5 1 1 1 2 2 2 1 KH domain DEAD PF00270.24 gi|218883638|ref|YP_002428020.1| - 0.0065 15.9 0.0 0.0096 15.4 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|218883638|ref|YP_002428020.1| - 0.012 15.6 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|218883638|ref|YP_002428020.1| - 0.032 14.5 0.0 0.099 12.9 0.0 1.7 2 0 0 2 2 2 0 ABC transporter IstB_IS21 PF01695.12 gi|218883638|ref|YP_002428020.1| - 0.048 13.0 0.0 0.092 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|218883638|ref|YP_002428020.1| - 0.12 12.3 0.2 2.1 8.2 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|218883638|ref|YP_002428020.1| - 0.13 11.7 0.0 2.9 7.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Met_10 PF02475.11 gi|218883639|ref|YP_002428021.1| - 3.7e-56 189.8 0.0 5e-56 189.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|218883639|ref|YP_002428021.1| - 8.1e-08 31.9 0.0 1.2e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.11 gi|218883639|ref|YP_002428021.1| - 2.1e-06 26.9 0.0 2.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|218883639|ref|YP_002428021.1| - 9e-06 25.7 0.0 1.4e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|218883639|ref|YP_002428021.1| - 4.7e-05 22.6 0.0 7.4e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|218883639|ref|YP_002428021.1| - 0.00014 21.3 0.0 0.00031 20.2 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|218883639|ref|YP_002428021.1| - 0.00047 19.5 0.0 0.00063 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|218883639|ref|YP_002428021.1| - 0.0013 19.2 0.0 0.0022 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218883639|ref|YP_002428021.1| - 0.0043 16.6 0.0 0.0069 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|218883639|ref|YP_002428021.1| - 0.066 12.5 0.0 0.089 12.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|218883639|ref|YP_002428021.1| - 0.089 13.6 0.0 0.3 11.9 0.0 1.7 1 1 0 2 2 2 0 Methyltransferase domain HhH-GPD PF00730.20 gi|218883640|ref|YP_002428022.1| - 3.7e-17 62.5 0.0 5.7e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|218883640|ref|YP_002428022.1| - 0.0004 20.4 6.4 0.00091 19.3 4.4 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|218883640|ref|YP_002428022.1| - 0.007 16.0 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif tRNA-synt_2 PF00152.15 gi|218883641|ref|YP_002428023.1| - 1.7e-83 280.2 0.0 2.4e-83 279.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|218883641|ref|YP_002428023.1| - 2.6e-10 40.0 0.9 4.3e-10 39.2 0.6 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|218883641|ref|YP_002428023.1| - 0.0029 16.8 0.0 0.03 13.5 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) ZipA_C PF04354.8 gi|218883641|ref|YP_002428023.1| - 0.098 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 ZipA, C-terminal FtsZ-binding domain Acetyltransf_1 PF00583.19 gi|218883642|ref|YP_002428024.1| - 1.7e-15 56.7 0.1 3.6e-15 55.7 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|218883642|ref|YP_002428024.1| - 4.6e-10 39.6 0.1 6.2e-10 39.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|218883642|ref|YP_002428024.1| - 8e-10 38.7 0.4 1.3e-09 38.0 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|218883642|ref|YP_002428024.1| - 6.1e-09 35.5 0.0 1.1e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|218883642|ref|YP_002428024.1| - 8.2e-08 32.3 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|218883642|ref|YP_002428024.1| - 2e-07 31.0 0.1 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|218883642|ref|YP_002428024.1| - 3.7e-07 30.0 0.3 7.6e-07 29.0 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|218883642|ref|YP_002428024.1| - 0.0014 18.8 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DFP PF04127.10 gi|218883643|ref|YP_002428025.1| - 4.2e-52 176.4 0.0 1.8e-51 174.3 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|218883643|ref|YP_002428025.1| - 1.3e-27 96.0 0.1 2.3e-27 95.1 0.1 1.5 1 0 0 1 1 1 1 Flavoprotein OrfB_Zn_ribbon PF07282.6 gi|218883644|ref|YP_002428026.1| - 3.7e-20 71.3 0.1 4.9e-20 70.9 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|218883644|ref|YP_002428026.1| - 0.0001 21.5 0.2 0.34 10.2 0.0 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding Baculo_ME53 PF06061.6 gi|218883644|ref|YP_002428026.1| - 0.0058 15.6 0.0 0.0063 15.5 0.0 1.0 1 0 0 1 1 1 1 Baculoviridae ME53 zinc_ribbon_2 PF13240.1 gi|218883644|ref|YP_002428026.1| - 0.012 15.0 0.3 3.4 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|218883644|ref|YP_002428026.1| - 0.014 15.2 0.2 0.022 14.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2318 PF10080.4 gi|218883644|ref|YP_002428026.1| - 0.019 14.7 0.2 0.026 14.2 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) FYVE PF01363.16 gi|218883644|ref|YP_002428026.1| - 0.051 13.4 0.1 0.067 13.0 0.1 1.2 1 0 0 1 1 1 0 FYVE zinc finger Prok-RING_1 PF14446.1 gi|218883644|ref|YP_002428026.1| - 0.056 13.1 0.4 0.085 12.6 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|218883644|ref|YP_002428026.1| - 0.08 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.17 gi|218883644|ref|YP_002428026.1| - 0.082 12.6 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF678 PF05077.7 gi|218883644|ref|YP_002428026.1| - 0.099 12.6 1.0 0.17 11.8 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF678) DUF2614 PF11023.3 gi|218883644|ref|YP_002428026.1| - 0.1 12.3 0.1 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) DNA_RNApol_7kD PF03604.8 gi|218883644|ref|YP_002428026.1| - 1.2 8.6 3.7 12 5.5 0.1 2.4 1 1 2 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|218883644|ref|YP_002428026.1| - 4.7 6.3 5.7 7.6 5.7 0.4 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF137 PF02006.11 gi|218883647|ref|YP_002428029.1| - 3.3e-82 274.1 2.5 4e-82 273.9 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 PhosphMutase PF10143.4 gi|218883649|ref|YP_002428031.1| - 1.1e-51 174.8 0.0 1.6e-51 174.3 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|218883649|ref|YP_002428031.1| - 8.5e-35 120.3 0.0 1.1e-34 120.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|218883649|ref|YP_002428031.1| - 0.0044 16.3 0.0 0.0076 15.6 0.0 1.3 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase ABC_tran PF00005.22 gi|218883650|ref|YP_002428032.1| - 7.3e-27 94.3 0.0 1.2e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883650|ref|YP_002428032.1| - 4.3e-18 66.2 0.2 1.6e-16 61.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218883650|ref|YP_002428032.1| - 3.9e-06 26.2 0.1 0.0094 15.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|218883650|ref|YP_002428032.1| - 0.00017 22.0 0.8 0.0005 20.4 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|218883650|ref|YP_002428032.1| - 0.00032 20.1 0.1 0.00063 19.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|218883650|ref|YP_002428032.1| - 0.0048 16.9 0.0 0.0067 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|218883650|ref|YP_002428032.1| - 0.0049 16.9 0.1 0.018 15.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|218883650|ref|YP_002428032.1| - 0.0097 15.6 0.2 0.021 14.5 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|218883650|ref|YP_002428032.1| - 0.013 16.3 0.3 0.025 15.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|218883650|ref|YP_002428032.1| - 0.015 15.5 0.0 0.033 14.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|218883650|ref|YP_002428032.1| - 0.015 15.0 0.1 0.052 13.2 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|218883650|ref|YP_002428032.1| - 0.016 14.2 0.1 2.4 7.1 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|218883650|ref|YP_002428032.1| - 0.023 14.1 0.1 2.6 7.4 0.1 2.2 2 1 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|218883650|ref|YP_002428032.1| - 0.029 13.8 0.1 0.057 12.8 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|218883650|ref|YP_002428032.1| - 0.041 13.7 0.3 0.51 10.2 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|218883650|ref|YP_002428032.1| - 0.061 11.7 0.1 0.75 8.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|218883650|ref|YP_002428032.1| - 0.064 12.9 0.0 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|218883650|ref|YP_002428032.1| - 0.071 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|218883650|ref|YP_002428032.1| - 0.076 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|218883650|ref|YP_002428032.1| - 0.098 12.5 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|218883650|ref|YP_002428032.1| - 0.13 10.9 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ABC2_membrane_3 PF12698.2 gi|218883651|ref|YP_002428033.1| - 8.9e-19 67.7 36.5 1.1e-18 67.3 25.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|218883651|ref|YP_002428033.1| - 5.5e-17 61.5 16.9 9.7e-17 60.7 11.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|218883651|ref|YP_002428033.1| - 1.1e-07 31.2 37.2 2e-07 30.4 25.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|218883651|ref|YP_002428033.1| - 2.2e-05 23.7 17.1 2.2e-05 23.7 11.9 3.5 2 1 1 3 3 3 2 ABC-2 type transporter Pantoate_transf PF02548.10 gi|218883652|ref|YP_002428034.1| - 1.9e-109 364.8 0.4 2.1e-109 364.6 0.3 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|218883652|ref|YP_002428034.1| - 5.6e-08 32.2 2.9 0.00092 18.4 0.1 3.0 1 1 2 3 3 3 3 Phosphoenolpyruvate phosphomutase ApbA_C PF08546.6 gi|218883653|ref|YP_002428035.1| - 5.4e-25 87.8 0.0 1.6e-24 86.2 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|218883653|ref|YP_002428035.1| - 2.2e-22 79.1 0.0 3.6e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|218883653|ref|YP_002428035.1| - 0.00018 21.3 0.0 0.0007 19.3 0.0 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DAO PF01266.19 gi|218883653|ref|YP_002428035.1| - 0.00055 18.9 0.8 0.00098 18.1 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|218883653|ref|YP_002428035.1| - 0.0011 19.3 0.0 0.0021 18.4 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|218883653|ref|YP_002428035.1| - 0.0032 16.5 0.0 0.0045 16.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain ThiF PF00899.16 gi|218883653|ref|YP_002428035.1| - 0.0047 16.7 0.1 0.009 15.8 0.1 1.4 1 0 0 1 1 1 1 ThiF family DUF2770 PF10968.3 gi|218883653|ref|YP_002428035.1| - 0.033 13.8 1.0 0.081 12.6 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2770) NAD_binding_8 PF13450.1 gi|218883653|ref|YP_002428035.1| - 0.038 14.0 0.3 0.097 12.7 0.2 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Aldolase_2 PF10120.4 gi|218883654|ref|YP_002428036.1| - 1.6e-33 115.4 0.0 2.2e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_23 PF13384.1 gi|218883654|ref|YP_002428036.1| - 0.002 17.7 0.0 0.0044 16.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|218883654|ref|YP_002428036.1| - 0.0041 16.4 0.4 0.022 14.1 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|218883654|ref|YP_002428036.1| - 0.01 15.6 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|218883654|ref|YP_002428036.1| - 0.046 13.2 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|218883654|ref|YP_002428036.1| - 0.069 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix GSCFA PF08885.6 gi|218883655|ref|YP_002428037.1| - 0.026 14.0 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 GSCFA family ABC_tran PF00005.22 gi|218883657|ref|YP_002428039.1| - 1.2e-26 93.6 0.0 1.7e-26 93.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883657|ref|YP_002428039.1| - 1.1e-15 58.4 0.2 1.5e-07 31.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|218883657|ref|YP_002428039.1| - 0.00034 19.7 0.0 0.14 11.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|218883657|ref|YP_002428039.1| - 0.00081 19.7 0.0 0.0011 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|218883657|ref|YP_002428039.1| - 0.0051 16.3 0.1 0.01 15.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|218883657|ref|YP_002428039.1| - 0.012 14.1 0.0 0.52 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|218883657|ref|YP_002428039.1| - 0.013 14.6 0.1 1.1 8.3 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|218883657|ref|YP_002428039.1| - 0.015 14.8 0.0 0.033 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|218883657|ref|YP_002428039.1| - 0.023 14.1 0.0 0.054 12.9 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|218883657|ref|YP_002428039.1| - 0.026 14.2 0.2 0.058 13.1 0.2 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|218883657|ref|YP_002428039.1| - 0.038 14.1 0.0 0.067 13.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|218883657|ref|YP_002428039.1| - 0.047 14.5 0.1 0.075 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|218883657|ref|YP_002428039.1| - 0.071 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ATP_bind_1 PF03029.12 gi|218883657|ref|YP_002428039.1| - 0.09 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|218883657|ref|YP_002428039.1| - 0.14 11.1 0.0 0.3 10.1 0.0 1.4 2 0 0 2 2 2 0 Zeta toxin ABC2_membrane_3 PF12698.2 gi|218883658|ref|YP_002428040.1| - 1.2e-23 83.6 23.3 1.5e-23 83.4 16.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|218883658|ref|YP_002428040.1| - 4.6e-13 48.6 21.5 6.3e-13 48.2 14.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|218883658|ref|YP_002428040.1| - 5e-05 22.5 33.1 0.00019 20.6 22.9 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein HTH_24 PF13412.1 gi|218883659|ref|YP_002428041.1| - 2.6e-09 36.3 0.4 5.6e-09 35.2 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|218883659|ref|YP_002428041.1| - 3.2e-08 33.2 2.8 1.4e-06 27.9 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|218883659|ref|YP_002428041.1| - 6.6e-08 32.0 0.5 1.7e-07 30.8 0.0 1.8 2 0 0 2 2 1 1 HTH domain MarR_2 PF12802.2 gi|218883659|ref|YP_002428041.1| - 1.7e-07 30.8 0.0 3.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|218883659|ref|YP_002428041.1| - 4e-07 30.0 0.0 7.7e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|218883659|ref|YP_002428041.1| - 5.7e-07 29.2 0.0 1.1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|218883659|ref|YP_002428041.1| - 6.4e-07 28.9 0.0 1.4e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|218883659|ref|YP_002428041.1| - 3e-06 26.8 0.0 7.4e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|218883659|ref|YP_002428041.1| - 4.1e-06 26.2 0.0 9e-06 25.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|218883659|ref|YP_002428041.1| - 4.8e-06 26.4 0.0 9.4e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|218883659|ref|YP_002428041.1| - 4.9e-06 26.5 0.0 1.1e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|218883659|ref|YP_002428041.1| - 8.5e-06 25.4 0.0 1.9e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|218883659|ref|YP_002428041.1| - 1.5e-05 24.4 0.0 3.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|218883659|ref|YP_002428041.1| - 3.4e-05 23.1 0.0 8e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.11 gi|218883659|ref|YP_002428041.1| - 3.8e-05 23.1 0.0 0.0001 21.8 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_5 PF01022.15 gi|218883659|ref|YP_002428041.1| - 3.9e-05 23.2 0.1 0.00017 21.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|218883659|ref|YP_002428041.1| - 4.3e-05 23.0 0.0 9.5e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain RPA_C PF08784.6 gi|218883659|ref|YP_002428041.1| - 6.6e-05 23.2 0.0 0.00012 22.4 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal HTH_29 PF13551.1 gi|218883659|ref|YP_002428041.1| - 9.7e-05 22.4 0.1 0.00092 19.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|218883659|ref|YP_002428041.1| - 0.0001 22.1 0.1 0.00026 20.8 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|218883659|ref|YP_002428041.1| - 0.0001 22.5 0.2 0.00042 20.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|218883659|ref|YP_002428041.1| - 0.00013 21.6 0.0 0.00036 20.2 0.0 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4_2 PF08281.7 gi|218883659|ref|YP_002428041.1| - 0.00018 20.9 0.0 0.00032 20.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|218883659|ref|YP_002428041.1| - 0.00025 20.8 0.0 0.00047 19.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_IclR PF09339.5 gi|218883659|ref|YP_002428041.1| - 0.00048 19.6 0.0 0.00077 18.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain FeoC PF09012.5 gi|218883659|ref|YP_002428041.1| - 0.00057 19.5 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 FeoC like transcriptional regulator Sigma70_ECF PF07638.6 gi|218883659|ref|YP_002428041.1| - 0.00081 19.1 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 ECF sigma factor MerR PF00376.18 gi|218883659|ref|YP_002428041.1| - 0.00086 18.8 0.4 0.01 15.3 0.3 2.3 1 1 0 1 1 1 1 MerR family regulatory protein HTH_7 PF02796.10 gi|218883659|ref|YP_002428041.1| - 0.00092 19.0 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|218883659|ref|YP_002428041.1| - 0.0011 18.2 0.0 0.0019 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.15 gi|218883659|ref|YP_002428041.1| - 0.0025 17.7 0.0 0.0038 17.1 0.0 1.3 1 0 0 1 1 1 1 Transposase MerR_1 PF13411.1 gi|218883659|ref|YP_002428041.1| - 0.0025 17.5 0.0 0.0066 16.1 0.0 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_38 PF13936.1 gi|218883659|ref|YP_002428041.1| - 0.0027 17.2 0.0 0.0047 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.8 gi|218883659|ref|YP_002428041.1| - 0.0042 16.5 0.0 0.007 15.8 0.0 1.2 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_40 PF14493.1 gi|218883659|ref|YP_002428041.1| - 0.0064 16.6 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain EAP30 PF04157.11 gi|218883659|ref|YP_002428041.1| - 0.0081 15.3 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_CodY PF08222.6 gi|218883659|ref|YP_002428041.1| - 0.0088 15.3 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|218883659|ref|YP_002428041.1| - 0.0094 15.7 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC FaeA PF04703.7 gi|218883659|ref|YP_002428041.1| - 0.01 15.9 0.0 0.029 14.5 0.0 1.8 1 0 0 1 1 1 0 FaeA-like protein SelB-wing_2 PF09106.6 gi|218883659|ref|YP_002428041.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_19 PF12844.2 gi|218883659|ref|YP_002428041.1| - 0.013 15.5 0.2 0.079 13.0 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.10 gi|218883659|ref|YP_002428041.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region DUF2250 PF10007.4 gi|218883659|ref|YP_002428041.1| - 0.015 15.2 0.1 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_26 PF13443.1 gi|218883659|ref|YP_002428041.1| - 0.016 15.3 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|218883659|ref|YP_002428041.1| - 0.018 14.3 0.1 0.035 13.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Mga PF05043.8 gi|218883659|ref|YP_002428041.1| - 0.019 15.2 0.0 0.054 13.7 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_17 PF12728.2 gi|218883659|ref|YP_002428041.1| - 0.026 14.7 0.3 0.081 13.1 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HemN_C PF06969.11 gi|218883659|ref|YP_002428041.1| - 0.035 14.1 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Tnp_ISL3 PF13542.1 gi|218883659|ref|YP_002428041.1| - 0.036 13.2 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 SgrR_N PF12793.2 gi|218883659|ref|YP_002428041.1| - 0.037 14.0 0.0 0.1 12.5 0.0 1.7 2 0 0 2 2 1 0 Sugar transport-related sRNA regulator N-term HxlR PF01638.12 gi|218883659|ref|YP_002428041.1| - 0.041 13.5 0.2 0.12 11.9 0.0 1.9 2 1 0 2 2 1 0 HxlR-like helix-turn-helix HTH_22 PF13309.1 gi|218883659|ref|YP_002428041.1| - 0.045 13.4 0.0 0.24 11.1 0.0 2.3 1 1 0 1 1 1 0 HTH domain Penicillinase_R PF03965.11 gi|218883659|ref|YP_002428041.1| - 0.052 13.6 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Penicillinase repressor HTH_Tnp_Tc3_1 PF11427.3 gi|218883659|ref|YP_002428041.1| - 0.055 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Tc3 transposase DUF134 PF02001.11 gi|218883659|ref|YP_002428041.1| - 0.078 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 DDRGK PF09756.4 gi|218883659|ref|YP_002428041.1| - 0.082 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_12 PF08461.5 gi|218883659|ref|YP_002428041.1| - 0.092 12.4 0.1 0.26 11.0 0.0 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Sigma70_r3 PF04539.11 gi|218883659|ref|YP_002428041.1| - 0.093 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 z-alpha PF02295.12 gi|218883659|ref|YP_002428041.1| - 0.093 12.5 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain DUF771 PF05595.6 gi|218883659|ref|YP_002428041.1| - 0.11 12.4 0.2 2.1 8.3 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF771) HTH_psq PF05225.11 gi|218883659|ref|YP_002428041.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.6 2 0 0 2 2 1 0 helix-turn-helix, Psq domain TetR_N PF00440.18 gi|218883659|ref|YP_002428041.1| - 0.13 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family TFIIE_alpha PF02002.12 gi|218883659|ref|YP_002428041.1| - 0.86 9.1 4.7 0.91 9.0 0.0 2.8 3 1 0 3 3 3 0 TFIIE alpha subunit Glyco_hydro_57 PF03065.10 gi|218883661|ref|YP_002428043.1| - 4.6e-71 239.6 0.1 2e-70 237.5 0.1 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|218883661|ref|YP_002428043.1| - 0.025 14.1 0.0 0.088 12.4 0.0 1.8 2 0 0 2 2 2 0 Polysaccharide deacetylase DUF1926 PF09095.6 gi|218883662|ref|YP_002428044.1| - 2.1e-43 148.5 0.0 6.5e-41 140.3 0.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.10 gi|218883662|ref|YP_002428044.1| - 1.4e-32 113.0 0.2 1.1e-31 110.0 0.2 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.6 gi|218883662|ref|YP_002428044.1| - 1e-31 108.7 0.9 1.8e-31 107.9 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glycos_transf_1 PF00534.15 gi|218883663|ref|YP_002428045.1| - 1.4e-25 89.7 0.0 2.9e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|218883663|ref|YP_002428045.1| - 3.6e-22 79.0 0.0 6.2e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|218883663|ref|YP_002428045.1| - 5.7e-11 42.6 0.0 1.1e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|218883663|ref|YP_002428045.1| - 1.7e-10 41.2 0.0 3.8e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|218883663|ref|YP_002428045.1| - 0.0002 21.5 0.0 0.00047 20.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|218883663|ref|YP_002428045.1| - 0.0058 16.3 0.0 2.5 7.7 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|218883663|ref|YP_002428045.1| - 0.024 14.4 0.1 4.3 7.1 0.1 3.2 2 1 0 2 2 2 0 Glycosyl transferase 4-like Glyco_hydro_57 PF03065.10 gi|218883664|ref|YP_002428046.1| - 8.7e-37 126.8 4.1 8.7e-37 126.8 2.9 2.0 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Transglut_C PF00927.17 gi|218883664|ref|YP_002428046.1| - 0.051 13.6 0.1 0.3 11.1 0.0 2.2 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain A2M_N PF01835.14 gi|218883664|ref|YP_002428046.1| - 0.052 13.8 0.0 0.17 12.1 0.0 1.9 1 0 0 1 1 1 0 MG2 domain DHHA1 PF02272.14 gi|218883665|ref|YP_002428047.1| - 0.091 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 DHHA1 domain Thioredoxin_7 PF13899.1 gi|218883666|ref|YP_002428048.1| - 2.1e-12 46.8 0.0 6.6e-12 45.2 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|218883666|ref|YP_002428048.1| - 8.9e-06 25.8 0.0 2.9e-05 24.2 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|218883666|ref|YP_002428048.1| - 0.0094 15.9 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin DUF161 PF02588.10 gi|218883666|ref|YP_002428048.1| - 0.038 14.2 1.3 0.068 13.4 0.9 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, YitT family COG1284 zinc_ribbon_4 PF13717.1 gi|218883666|ref|YP_002428048.1| - 0.073 12.7 0.1 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Pput2613-deam PF14427.1 gi|218883666|ref|YP_002428048.1| - 0.093 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Pput_2613-like deaminase zinc_ribbon_5 PF13719.1 gi|218883666|ref|YP_002428048.1| - 0.1 12.1 0.1 0.29 10.7 0.0 1.7 2 0 0 2 2 2 0 zinc-ribbon domain DUF2910 PF11139.3 gi|218883667|ref|YP_002428049.1| - 2.1e-06 27.0 7.6 2.4e-05 23.6 5.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2910) DUF1240 PF06836.7 gi|218883667|ref|YP_002428049.1| - 3.9 7.7 9.8 2.9 8.1 1.5 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) Peptidase_M48 PF01435.13 gi|218883669|ref|YP_002428051.1| - 7.8e-46 156.4 0.0 1.5e-45 155.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M48 Borrelia_P13 PF05628.7 gi|218883669|ref|YP_002428051.1| - 0.007 16.1 7.1 0.12 12.1 0.2 3.0 2 1 1 3 3 3 2 Borrelia membrane protein P13 Peptidase_MA_2 PF13485.1 gi|218883669|ref|YP_002428051.1| - 0.13 12.3 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily OppC_N PF12911.2 gi|218883669|ref|YP_002428051.1| - 2.2 7.7 13.7 1.7 8.0 0.4 3.5 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Peptidase_M56 PF05569.6 gi|218883669|ref|YP_002428051.1| - 4 6.3 11.7 0.066 12.1 1.4 2.7 3 1 1 4 4 4 0 BlaR1 peptidase M56 Lon_C PF05362.8 gi|218883670|ref|YP_002428052.1| - 3.7e-12 45.9 0.0 6.7e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain Metallophos_2 PF12850.2 gi|218883671|ref|YP_002428053.1| - 7.6e-11 42.0 0.0 1.5e-10 41.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|218883671|ref|YP_002428053.1| - 0.00011 21.7 1.3 0.0017 17.8 0.9 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase WHEP-TRS PF00458.15 gi|218883673|ref|YP_002428055.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 WHEP-TRS domain TPP_enzyme_C PF02775.16 gi|218883674|ref|YP_002428056.1| - 1.8e-19 69.8 0.0 3.4e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|218883674|ref|YP_002428056.1| - 5.6e-15 55.4 0.0 1.2e-14 54.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|218883674|ref|YP_002428056.1| - 9e-12 44.0 12.2 1.9e-07 30.3 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|218883674|ref|YP_002428056.1| - 3.9e-10 39.1 11.8 2e-05 24.2 1.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|218883674|ref|YP_002428056.1| - 5.1e-09 35.5 12.6 0.00041 20.0 2.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218883674|ref|YP_002428056.1| - 3.3e-07 30.0 9.0 9.3e-07 28.6 6.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|218883674|ref|YP_002428056.1| - 7.4e-07 29.4 21.8 4.8e-05 23.6 8.4 2.7 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|218883674|ref|YP_002428056.1| - 1.1e-06 28.3 10.3 4.2e-06 26.4 7.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218883674|ref|YP_002428056.1| - 1.7e-05 25.0 10.9 5.1e-05 23.4 7.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218883674|ref|YP_002428056.1| - 0.00014 22.5 5.5 0.00092 19.9 0.6 2.7 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|218883674|ref|YP_002428056.1| - 0.0015 18.4 9.2 0.007 16.3 6.5 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218883674|ref|YP_002428056.1| - 0.0019 18.3 2.3 0.0019 18.3 1.6 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218883674|ref|YP_002428056.1| - 0.0054 17.1 6.4 0.54 10.7 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Transket_pyr PF02779.19 gi|218883674|ref|YP_002428056.1| - 0.02 14.3 0.1 0.077 12.4 0.0 1.9 2 1 0 2 2 2 0 Transketolase, pyrimidine binding domain Fer4_17 PF13534.1 gi|218883674|ref|YP_002428056.1| - 0.026 14.8 7.7 0.31 11.4 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218883674|ref|YP_002428056.1| - 0.043 14.3 12.6 0.66 10.5 1.6 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain TPP_enzyme_N PF02776.13 gi|218883674|ref|YP_002428056.1| - 0.074 12.5 0.1 0.2 11.0 0.1 1.8 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_13 PF13370.1 gi|218883674|ref|YP_002428056.1| - 0.14 12.5 11.6 2.2 8.7 1.9 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|218883675|ref|YP_002428057.1| - 1.4e-29 103.2 0.0 1.6e-29 102.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase NUC130_3NT PF08158.7 gi|218883676|ref|YP_002428058.1| - 0.034 14.4 0.0 0.056 13.7 0.0 1.4 1 1 0 1 1 1 0 NUC130/3NT domain DUF1886 PF09171.5 gi|218883678|ref|YP_002428060.1| - 0.0089 15.0 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) DUF2419 PF10343.4 gi|218883678|ref|YP_002428060.1| - 0.062 12.5 0.0 0.29 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2419) Methyltransf_26 PF13659.1 gi|218883680|ref|YP_002428062.1| - 2.2e-10 40.5 0.0 3.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|218883680|ref|YP_002428062.1| - 0.00012 21.5 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|218883680|ref|YP_002428062.1| - 0.0073 15.4 0.2 1.1 8.3 0.0 2.9 3 0 0 3 3 3 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|218883680|ref|YP_002428062.1| - 0.011 16.2 0.0 0.022 15.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Spermine_synth PF01564.12 gi|218883680|ref|YP_002428062.1| - 0.015 14.2 0.0 0.022 13.7 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase PrmA PF06325.8 gi|218883680|ref|YP_002428062.1| - 0.031 13.3 0.0 0.056 12.5 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_30 PF05430.6 gi|218883680|ref|YP_002428062.1| - 0.031 13.9 0.0 0.065 12.9 0.0 1.6 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase MMS1_N PF10433.4 gi|218883680|ref|YP_002428062.1| - 0.097 10.7 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term ACT_6 PF13740.1 gi|218883681|ref|YP_002428063.1| - 0.098 12.3 0.1 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 ACT domain RHH_3 PF12651.2 gi|218883681|ref|YP_002428063.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.7 1 1 0 1 1 1 0 Ribbon-helix-helix domain ABC-3 PF00950.12 gi|218883682|ref|YP_002428064.1| - 1.1e-21 77.3 30.3 1.1e-21 77.3 21.0 1.4 1 1 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|218883682|ref|YP_002428064.1| - 0.1 11.3 36.4 0.029 13.1 22.0 2.1 1 1 0 1 1 1 0 FecCD transport family DAG1 PF05454.6 gi|218883682|ref|YP_002428064.1| - 0.25 10.4 0.7 0.37 9.9 0.5 1.2 1 0 0 1 1 1 0 Dystroglycan (Dystrophin-associated glycoprotein 1) DUF1467 PF07330.7 gi|218883682|ref|YP_002428064.1| - 9.9 6.0 9.1 0.51 10.1 0.4 3.0 3 1 1 4 4 4 0 Protein of unknown function (DUF1467) TroA PF01297.12 gi|218883683|ref|YP_002428065.1| - 4.1e-28 98.3 0.0 5e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|218883684|ref|YP_002428066.1| - 4.3e-23 82.1 0.0 5.9e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883684|ref|YP_002428066.1| - 3.5e-12 46.8 0.2 5.4e-09 36.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218883684|ref|YP_002428066.1| - 5.4e-05 22.5 0.0 0.21 10.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|218883684|ref|YP_002428066.1| - 0.00019 20.6 0.0 0.23 10.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Zeta_toxin PF06414.7 gi|218883684|ref|YP_002428066.1| - 0.0015 17.6 0.0 0.0023 17.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|218883684|ref|YP_002428066.1| - 0.0018 18.6 0.1 0.0026 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|218883684|ref|YP_002428066.1| - 0.0046 16.9 0.0 0.072 13.0 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|218883684|ref|YP_002428066.1| - 0.021 14.9 0.2 0.08 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|218883684|ref|YP_002428066.1| - 0.04 12.8 0.1 0.061 12.2 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|218883684|ref|YP_002428066.1| - 0.041 13.4 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.14 gi|218883684|ref|YP_002428066.1| - 0.094 12.1 0.2 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|218883684|ref|YP_002428066.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|218883684|ref|YP_002428066.1| - 0.16 11.6 0.2 0.3 10.7 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|218883684|ref|YP_002428066.1| - 0.18 11.7 0.1 2.9 7.8 0.0 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Imm3 PF14425.1 gi|218883685|ref|YP_002428067.1| - 0.16 11.9 0.4 0.32 10.9 0.1 1.6 2 0 0 2 2 2 0 Immunity protein Imm3 Ald_Xan_dh_C2 PF02738.13 gi|218883686|ref|YP_002428068.1| - 2.3e-150 501.5 0.0 3e-150 501.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|218883686|ref|YP_002428068.1| - 1.2e-25 89.6 0.0 2.3e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|218883687|ref|YP_002428069.1| - 3.1e-28 97.4 0.0 4.9e-28 96.8 0.0 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|218883687|ref|YP_002428069.1| - 3.5e-07 29.8 0.2 3.5e-07 29.8 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|218883687|ref|YP_002428069.1| - 2.3e-05 24.1 0.1 3.8e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|218883687|ref|YP_002428069.1| - 0.00062 19.5 0.3 0.0072 16.1 0.2 2.3 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain S4 PF01479.20 gi|218883687|ref|YP_002428069.1| - 0.098 12.1 0.7 1 8.8 0.0 2.6 3 0 0 3 3 3 0 S4 domain FAD_binding_5 PF00941.16 gi|218883688|ref|YP_002428070.1| - 1.4e-25 89.7 0.0 2.2e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|218883688|ref|YP_002428070.1| - 2.5e-14 53.0 0.0 4.2e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain DUF2528 PF10800.3 gi|218883688|ref|YP_002428070.1| - 0.064 13.6 0.1 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2528) PALP PF00291.20 gi|218883689|ref|YP_002428071.1| - 2.1e-64 217.7 0.0 2.3e-64 217.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF650 PF04894.7 gi|218883690|ref|YP_002428072.1| - 2.1e-96 322.5 0.0 2.8e-96 322.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|218883690|ref|YP_002428072.1| - 1.3e-33 114.9 0.0 1.9e-33 114.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) DUF913 PF06025.7 gi|218883690|ref|YP_002428072.1| - 0.021 13.5 0.0 0.033 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) Radical_SAM PF04055.16 gi|218883691|ref|YP_002428073.1| - 2.5e-09 37.4 0.1 1.1e-08 35.4 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|218883691|ref|YP_002428073.1| - 0.11 12.0 8.1 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF2192 PF09958.4 gi|218883692|ref|YP_002428074.1| - 1.6e-76 256.5 0.7 1.8e-76 256.3 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) 7TM_GPCR_Srsx PF10320.4 gi|218883692|ref|YP_002428074.1| - 0.17 11.0 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srsx SSV1_ORF_D-335 PF07935.6 gi|218883693|ref|YP_002428075.1| - 0.085 12.6 0.6 0.32 10.7 0.4 2.0 1 1 0 1 1 1 0 ORF D-335-like protein HTH_3 PF01381.17 gi|218883695|ref|YP_002428077.1| - 6.3e-05 22.7 0.7 0.0001 22.0 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.1 gi|218883695|ref|YP_002428077.1| - 0.0018 17.8 0.1 0.0037 16.8 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|218883695|ref|YP_002428077.1| - 0.0034 16.7 0.1 0.0071 15.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.8 gi|218883695|ref|YP_002428077.1| - 0.0034 17.1 0.6 0.018 14.8 0.0 2.5 3 0 0 3 3 3 1 NUMOD1 domain HTH_28 PF13518.1 gi|218883695|ref|YP_002428077.1| - 0.0037 17.2 0.1 0.0075 16.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_Tc3_1 PF11427.3 gi|218883695|ref|YP_002428077.1| - 0.0049 16.4 0.5 0.17 11.5 0.0 2.3 2 0 0 2 2 2 1 Tc3 transposase HTH_Tnp_1 PF01527.15 gi|218883695|ref|YP_002428077.1| - 0.0055 16.6 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_10 PF04967.7 gi|218883695|ref|YP_002428077.1| - 0.0089 15.5 0.6 0.1 12.1 0.0 2.6 4 0 0 4 4 4 1 HTH DNA binding domain HTH_Tnp_IS630 PF01710.11 gi|218883695|ref|YP_002428077.1| - 0.0092 15.6 0.0 0.012 15.2 0.0 1.4 1 1 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|218883695|ref|YP_002428077.1| - 0.012 14.8 0.0 0.022 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|218883695|ref|YP_002428077.1| - 0.012 15.2 0.3 0.023 14.3 0.2 1.5 1 0 0 1 1 1 0 HTH domain MerR PF00376.18 gi|218883695|ref|YP_002428077.1| - 0.018 14.6 0.1 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein HTH_29 PF13551.1 gi|218883695|ref|YP_002428077.1| - 0.042 13.9 0.1 0.079 13.1 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix Rep_fac_C PF08542.6 gi|218883695|ref|YP_002428077.1| - 0.068 13.1 0.1 0.16 11.9 0.0 1.7 1 1 0 1 1 1 0 Replication factor C C-terminal domain MerR_1 PF13411.1 gi|218883695|ref|YP_002428077.1| - 0.076 12.7 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_26 PF13443.1 gi|218883695|ref|YP_002428077.1| - 0.084 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_5 PF01022.15 gi|218883695|ref|YP_002428077.1| - 0.084 12.5 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_31 PF13560.1 gi|218883695|ref|YP_002428077.1| - 0.096 12.9 0.1 0.27 11.4 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|218883695|ref|YP_002428077.1| - 0.12 11.8 1.0 0.42 10.1 0.0 2.3 3 0 0 3 3 3 0 Sigma-70, region 4 Aminotran_1_2 PF00155.16 gi|218883697|ref|YP_002428079.1| - 4.7e-35 121.2 0.0 5.2e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|218883697|ref|YP_002428079.1| - 2.5e-07 29.5 0.0 3.7e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|218883697|ref|YP_002428079.1| - 0.00069 18.8 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|218883697|ref|YP_002428079.1| - 0.0013 17.8 0.0 0.0025 16.8 0.0 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.16 gi|218883698|ref|YP_002428080.1| - 4.3e-10 40.0 0.0 1.6e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|218883698|ref|YP_002428080.1| - 0.002 17.9 0.0 0.0051 16.6 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain HMG-CoA_red PF00368.13 gi|218883699|ref|YP_002428081.1| - 0.11 11.1 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase DUF35_N PF12172.3 gi|218883700|ref|YP_002428082.1| - 6.5e-10 38.6 1.7 9.7e-10 38.0 1.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|218883700|ref|YP_002428082.1| - 6.5e-05 23.0 0.0 9.2e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain Methyltransf_13 PF08421.6 gi|218883700|ref|YP_002428082.1| - 0.0036 16.7 0.4 0.54 9.7 0.0 2.6 3 0 0 3 3 3 2 Putative zinc binding domain DZR PF12773.2 gi|218883700|ref|YP_002428082.1| - 0.041 13.6 0.6 0.066 13.0 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|218883700|ref|YP_002428082.1| - 0.083 12.1 2.1 0.13 11.5 1.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain ACP_syn_III_C PF08541.5 gi|218883701|ref|YP_002428083.1| - 4.1e-12 45.9 0.0 2.3e-11 43.5 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|218883701|ref|YP_002428083.1| - 0.00017 21.1 0.6 0.00046 19.8 0.4 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|218883701|ref|YP_002428083.1| - 0.0016 17.9 0.0 0.036 13.5 0.0 2.2 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.18 gi|218883701|ref|YP_002428083.1| - 0.036 13.0 0.1 0.097 11.6 0.1 1.6 2 0 0 2 2 2 0 Thiolase, N-terminal domain ABC_tran PF00005.22 gi|218883702|ref|YP_002428084.1| - 1e-29 103.5 0.0 1.5e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|218883702|ref|YP_002428084.1| - 9.4e-19 67.5 0.2 1.8e-18 66.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|218883702|ref|YP_002428084.1| - 6.7e-08 32.8 0.1 5.3e-05 23.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain KaiC PF06745.8 gi|218883702|ref|YP_002428084.1| - 0.0062 15.6 0.1 0.51 9.4 0.0 2.2 2 0 0 2 2 2 1 KaiC AAA_22 PF13401.1 gi|218883702|ref|YP_002428084.1| - 0.0067 16.5 0.0 0.021 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|218883702|ref|YP_002428084.1| - 0.015 14.7 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|218883702|ref|YP_002428084.1| - 0.021 15.1 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|218883702|ref|YP_002428084.1| - 0.087 12.2 0.0 0.19 11.1 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_16 PF13191.1 gi|218883702|ref|YP_002428084.1| - 0.11 12.5 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.15 gi|218883702|ref|YP_002428084.1| - 0.13 10.9 0.2 1.5 7.4 0.0 2.0 1 1 1 2 2 2 0 G-protein alpha subunit AAA_13 PF13166.1 gi|218883702|ref|YP_002428084.1| - 0.14 10.6 0.1 0.31 9.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|218883702|ref|YP_002428084.1| - 0.15 12.4 0.2 0.24 11.6 0.2 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|218883702|ref|YP_002428084.1| - 0.22 10.3 0.2 0.37 9.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|218883703|ref|YP_002428085.1| - 4e-31 108.1 0.0 5.2e-31 107.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|218883703|ref|YP_002428085.1| - 7.1e-19 67.9 0.2 1.2e-18 67.2 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|218883703|ref|YP_002428085.1| - 2.7e-10 40.7 0.3 2.7e-08 34.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|218883703|ref|YP_002428085.1| - 8.6e-06 25.1 0.6 0.00015 21.0 0.1 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|218883703|ref|YP_002428085.1| - 2.8e-05 23.5 0.0 0.0011 18.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.20 gi|218883703|ref|YP_002428085.1| - 0.0013 18.3 0.1 0.0022 17.5 0.1 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|218883703|ref|YP_002428085.1| - 0.0042 16.1 0.1 0.1 11.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|218883703|ref|YP_002428085.1| - 0.0056 16.1 0.0 0.013 15.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|218883703|ref|YP_002428085.1| - 0.013 15.6 0.6 0.15 12.2 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|218883703|ref|YP_002428085.1| - 0.014 15.6 0.1 0.065 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|218883703|ref|YP_002428085.1| - 0.029 14.5 0.1 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|218883703|ref|YP_002428085.1| - 0.034 13.3 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|218883703|ref|YP_002428085.1| - 0.038 13.9 0.1 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|218883703|ref|YP_002428085.1| - 0.091 11.9 0.0 0.79 8.8 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|218883703|ref|YP_002428085.1| - 0.13 12.5 0.0 0.67 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|218883703|ref|YP_002428085.1| - 0.14 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Radical_SAM PF04055.16 gi|218883705|ref|YP_002428087.1| - 2.5e-19 70.0 0.0 5.2e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily BPD_transp_1 PF00528.17 gi|218883706|ref|YP_002428088.1| - 2.4e-25 89.1 17.1 2.4e-25 89.1 11.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Dak1 PF02733.12 gi|218883706|ref|YP_002428088.1| - 0.11 11.1 0.3 0.17 10.4 0.2 1.2 1 0 0 1 1 1 0 Dak1 domain BPD_transp_1 PF00528.17 gi|218883707|ref|YP_002428089.1| - 1.9e-29 102.4 15.7 1.9e-29 102.4 10.9 2.6 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component MacB_PCD PF12704.2 gi|218883707|ref|YP_002428089.1| - 0.015 14.8 0.7 0.59 9.6 0.0 2.2 2 0 0 2 2 2 0 MacB-like periplasmic core domain SBP_bac_5 PF00496.17 gi|218883708|ref|YP_002428090.1| - 4e-13 48.9 6.9 2.2e-10 39.9 0.1 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4064 PF13273.1 gi|218883708|ref|YP_002428090.1| - 0.043 13.9 2.3 0.12 12.5 1.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) Pox_A32 PF04665.7 gi|218883708|ref|YP_002428090.1| - 0.054 12.7 0.7 0.096 11.9 0.5 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein DUF4200 PF13863.1 gi|218883708|ref|YP_002428090.1| - 1 9.2 2.9 2.8 7.9 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) DUF4618 PF15397.1 gi|218883708|ref|YP_002428090.1| - 3.1 7.0 10.3 1.4 8.1 0.3 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4618) COX14 PF14880.1 gi|218883709|ref|YP_002428091.1| - 0.65 9.6 0.1 0.65 9.6 0.1 2.4 2 0 0 2 2 2 0 Cytochrome oxidase c assembly Oxidored_q2 PF00420.19 gi|218883710|ref|YP_002428092.1| - 0.037 13.6 0.4 0.046 13.3 0.3 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2976 PF11190.3 gi|218883710|ref|YP_002428092.1| - 0.2 11.2 2.7 0.12 11.9 0.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) PspB PF06667.7 gi|218883710|ref|YP_002428092.1| - 0.22 11.4 1.2 0.33 10.8 0.8 1.3 1 0 0 1 1 1 0 Phage shock protein B LAB_N PF07578.6 gi|218883710|ref|YP_002428092.1| - 1.3 8.9 7.1 28 4.7 4.9 2.2 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain UPF0154 PF03672.8 gi|218883712|ref|YP_002428094.1| - 0.0055 16.3 0.0 0.0055 16.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0154) DUF4006 PF13179.1 gi|218883712|ref|YP_002428094.1| - 0.059 12.9 0.7 0.072 12.6 0.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF4006) Glyco_hydro_35 PF01301.14 gi|218883713|ref|YP_002428095.1| - 9e-61 205.9 2.9 3.2e-60 204.1 0.1 2.6 3 0 0 3 3 3 1 Glycosyl hydrolases family 35 BetaGal_dom2 PF10435.4 gi|218883713|ref|YP_002428095.1| - 1.6e-08 34.0 0.0 2.7e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Beta-galactosidase, domain 2 Glyco_hydro_42 PF02449.10 gi|218883713|ref|YP_002428095.1| - 2.9e-08 33.2 3.1 4e-07 29.4 1.1 2.6 2 1 0 2 2 2 1 Beta-galactosidase BetaGal_dom4_5 PF13364.1 gi|218883713|ref|YP_002428095.1| - 2.5e-05 24.5 0.0 0.0029 17.8 0.0 3.1 3 0 0 3 3 3 1 Beta-galactosidase jelly roll domain BPD_transp_1 PF00528.17 gi|218883714|ref|YP_002428096.1| - 6.5e-11 42.0 22.0 6.5e-11 42.0 15.2 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF389 PF04087.9 gi|218883714|ref|YP_002428096.1| - 4.8 7.1 16.3 0.27 11.1 2.0 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF389) BPD_transp_1 PF00528.17 gi|218883715|ref|YP_002428097.1| - 1.1e-15 57.6 12.5 1.9e-15 56.8 8.7 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Sec7_N PF12783.2 gi|218883715|ref|YP_002428097.1| - 0.027 13.8 0.1 0.062 12.7 0.1 1.5 1 0 0 1 1 1 0 Guanine nucleotide exchange factor in Golgi transport N-terminal SBP_bac_8 PF13416.1 gi|218883716|ref|YP_002428098.1| - 4.5e-30 105.3 1.0 4.5e-30 105.3 0.7 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|218883716|ref|YP_002428098.1| - 1e-23 84.6 7.6 1e-23 84.6 5.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SoxE PF06525.6 gi|218883716|ref|YP_002428098.1| - 0.06 12.6 9.3 0.15 11.3 6.3 1.8 2 0 0 2 2 2 0 Sulfocyanin (SoxE) Mucin PF01456.12 gi|218883716|ref|YP_002428098.1| - 0.4 10.4 31.5 0.64 9.7 21.2 1.8 2 0 0 2 2 2 0 Mucin-like glycoprotein Shisa PF13908.1 gi|218883716|ref|YP_002428098.1| - 0.7 10.0 5.1 1.1 9.3 3.5 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Neur PF00064.13 gi|218883716|ref|YP_002428098.1| - 1.5 6.8 5.4 2.1 6.3 3.7 1.1 1 0 0 1 1 1 0 Neuraminidase SSP160 PF06933.6 gi|218883716|ref|YP_002428098.1| - 9.4 4.0 22.2 14 3.4 15.4 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Glyco_hydro_53 PF07745.8 gi|218883717|ref|YP_002428099.1| - 8.3e-114 379.8 0.1 1.1e-113 379.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 DUF2223 PF09985.4 gi|218883717|ref|YP_002428099.1| - 4.4e-48 163.5 1.6 1.7e-46 158.4 0.1 2.9 2 1 1 3 3 3 1 Domain of unknown function (DUF2223) Cellulase PF00150.13 gi|218883717|ref|YP_002428099.1| - 6.8e-11 41.8 0.3 1.1e-10 41.2 0.2 1.2 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Big_4 PF07532.6 gi|218883717|ref|YP_002428099.1| - 1e-05 24.9 0.1 3.4e-05 23.2 0.1 1.9 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 4) Glyco_hydro_cc PF11790.3 gi|218883717|ref|YP_002428099.1| - 4.7e-05 22.9 0.3 0.00017 21.1 0.0 1.8 2 1 0 2 2 2 1 Glycosyl hydrolase catalytic core Na_Ca_ex PF01699.19 gi|218883717|ref|YP_002428099.1| - 0.015 14.9 0.1 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 Sodium/calcium exchanger protein Cellulase-like PF12876.2 gi|218883717|ref|YP_002428099.1| - 0.037 14.4 0.2 0.13 12.7 0.0 2.0 2 0 0 2 2 2 0 Sugar-binding cellulase-like NADHdh PF00146.16 gi|218883718|ref|YP_002428100.1| - 9e-26 90.6 23.3 1e-25 90.4 16.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase FtsX PF02687.16 gi|218883719|ref|YP_002428101.1| - 0.59 9.9 9.1 5.7 6.7 6.3 1.9 1 1 1 2 2 2 0 FtsX-like permease family Oxidored_q1 PF00361.15 gi|218883720|ref|YP_002428102.1| - 1.7e-52 178.3 20.2 1.7e-52 178.3 14.0 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains MNHE PF01899.11 gi|218883721|ref|YP_002428103.1| - 1.7e-42 144.7 0.6 2e-42 144.5 0.4 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MnhB PF04039.8 gi|218883721|ref|YP_002428103.1| - 0.046 13.7 2.4 0.078 13.0 1.6 1.4 1 1 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.19 gi|218883722|ref|YP_002428104.1| - 2.3e-21 75.1 0.1 3e-21 74.8 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PIG-P PF08510.7 gi|218883722|ref|YP_002428104.1| - 8.2 6.0 6.3 27 4.4 4.4 1.9 1 1 0 1 1 1 0 PIG-P MnhB PF04039.8 gi|218883723|ref|YP_002428105.1| - 1.7e-15 57.1 17.9 1.7e-15 57.1 12.4 2.2 3 1 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.1 gi|218883724|ref|YP_002428106.1| - 3.4e-12 46.1 3.3 3.4e-12 46.1 2.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Trep_Strep PF09605.5 gi|218883724|ref|YP_002428106.1| - 0.13 11.9 8.1 0.029 14.0 3.1 1.6 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) CreD PF06123.7 gi|218883724|ref|YP_002428106.1| - 0.87 8.0 7.1 0.95 7.9 4.9 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD PIG-Y PF15159.1 gi|218883724|ref|YP_002428106.1| - 6.8 6.9 8.7 2.9 8.1 4.4 1.7 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y PhaG_MnhG_YufB PF03334.9 gi|218883725|ref|YP_002428107.1| - 4.8e-17 61.7 10.8 5.9e-17 61.4 7.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF3084 PF11283.3 gi|218883725|ref|YP_002428107.1| - 0.55 10.1 3.7 0.21 11.4 0.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) NfeD PF01957.13 gi|218883725|ref|YP_002428107.1| - 1.1 9.4 13.8 0.35 10.9 2.9 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Flavi_NS4A PF01350.12 gi|218883725|ref|YP_002428107.1| - 2.9 7.4 5.0 1.4 8.4 1.5 1.8 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A MrpF_PhaF PF04066.8 gi|218883726|ref|YP_002428108.1| - 2.5e-08 34.0 6.3 2.5e-08 34.0 4.3 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Fumarate_red_D PF02313.12 gi|218883726|ref|YP_002428108.1| - 8.6 6.2 10.1 17 5.3 7.0 1.6 1 1 0 1 1 1 0 Fumarate reductase subunit D DUF983 PF06170.7 gi|218883726|ref|YP_002428108.1| - 9.3 6.4 9.9 1.4 9.0 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Fer4 PF00037.22 gi|218883727|ref|YP_002428109.1| - 2.9e-14 51.9 12.0 1.5e-07 30.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218883727|ref|YP_002428109.1| - 1e-11 45.0 7.2 1.4e-11 44.5 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|218883727|ref|YP_002428109.1| - 9.9e-11 41.3 3.5 7.9e-06 25.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|218883727|ref|YP_002428109.1| - 1.4e-10 40.8 5.5 4.8e-05 23.0 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218883727|ref|YP_002428109.1| - 9.9e-10 37.8 12.8 7.9e-06 25.5 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218883727|ref|YP_002428109.1| - 2.1e-09 37.4 7.9 3.4e-09 36.8 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218883727|ref|YP_002428109.1| - 2.9e-09 36.3 10.8 0.00015 21.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|218883727|ref|YP_002428109.1| - 3.1e-08 33.5 2.8 0.0015 18.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|218883727|ref|YP_002428109.1| - 5.9e-08 33.0 3.6 0.0043 17.4 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218883727|ref|YP_002428109.1| - 8.6e-08 32.8 7.0 1.9e-07 31.7 4.9 1.5 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|218883727|ref|YP_002428109.1| - 2.7e-07 30.8 4.7 0.0078 16.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218883727|ref|YP_002428109.1| - 0.00017 21.9 15.5 0.027 15.0 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|218883727|ref|YP_002428109.1| - 0.0014 18.7 12.4 0.052 13.8 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|218883727|ref|YP_002428109.1| - 0.23 12.0 7.9 4.5 7.9 0.1 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain amfpi-1 PF12190.3 gi|218883727|ref|YP_002428109.1| - 0.31 11.5 4.7 2 8.9 0.4 2.1 1 1 1 2 2 2 0 Fungal protease inhibitor Fer4_11 PF13247.1 gi|218883727|ref|YP_002428109.1| - 0.45 10.4 4.1 2.5 8.0 0.4 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Complex1_49kDa PF00346.14 gi|218883728|ref|YP_002428110.1| - 6.6e-46 156.4 0.1 7.3e-31 107.1 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|218883728|ref|YP_002428110.1| - 4.9e-10 38.7 6.3 2.2e-09 36.6 0.3 3.2 2 2 1 3 3 3 2 Nickel-dependent hydrogenase DUF3590 PF12148.3 gi|218883728|ref|YP_002428110.1| - 0.097 12.2 1.0 3.9 7.1 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3590) DASH_Dad2 PF08654.5 gi|218883728|ref|YP_002428110.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 DASH complex subunit Dad2 Complex1_30kDa PF00329.14 gi|218883729|ref|YP_002428111.1| - 1.1e-20 73.7 0.0 1.4e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|218883730|ref|YP_002428112.1| - 8.4e-29 99.8 0.5 1.1e-28 99.3 0.3 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Sua5_yciO_yrdC PF01300.13 gi|218883731|ref|YP_002428113.1| - 4.5e-44 149.8 0.0 6.3e-44 149.3 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|218883731|ref|YP_002428113.1| - 9.9e-32 108.0 10.4 2.9e-16 58.5 1.1 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|218883731|ref|YP_002428113.1| - 1.6e-18 66.6 0.0 3.5e-18 65.4 0.0 1.6 1 0 0 1 1 1 1 Acylphosphatase FGGY_C PF02782.11 gi|218883731|ref|YP_002428113.1| - 0.022 14.3 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain zf-C2H2 PF00096.21 gi|218883731|ref|YP_002428113.1| - 0.41 11.0 1.8 7 7.2 0.1 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type HupF_HypC PF01455.13 gi|218883732|ref|YP_002428114.1| - 9.2e-24 83.2 0.4 1e-23 83.0 0.3 1.0 1 0 0 1 1 1 1 HupF/HypC family Hexapep PF00132.19 gi|218883732|ref|YP_002428114.1| - 0.016 14.7 0.1 0.037 13.5 0.1 1.7 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) tRNA_bind PF01588.15 gi|218883732|ref|YP_002428114.1| - 0.073 12.9 0.1 0.083 12.7 0.1 1.2 1 0 0 1 1 1 0 Putative tRNA binding domain AIRS_C PF02769.17 gi|218883733|ref|YP_002428115.1| - 2.4e-23 82.8 0.0 3.3e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|218883733|ref|YP_002428115.1| - 5.1e-13 49.0 0.1 1.2e-12 47.8 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF4346 PF14251.1 gi|218883734|ref|YP_002428116.1| - 3.6e-10 39.5 0.3 0.00058 19.5 0.0 3.0 3 0 0 3 3 3 2 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|218883734|ref|YP_002428116.1| - 0.005 15.3 0.3 0.0089 14.5 0.2 1.3 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Flavoprotein PF02441.14 gi|218883735|ref|YP_002428117.1| - 2e-17 63.0 0.0 3e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4_6 PF12837.2 gi|218883735|ref|YP_002428117.1| - 1.7e-09 37.1 14.5 2.5e-05 23.9 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218883735|ref|YP_002428117.1| - 1.1e-07 31.5 10.9 1.7e-07 30.9 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|218883735|ref|YP_002428117.1| - 2.1e-07 31.1 11.9 1.9e-06 28.1 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218883735|ref|YP_002428117.1| - 8.1e-07 29.6 6.9 0.0019 18.8 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|218883735|ref|YP_002428117.1| - 1e-06 28.0 14.3 0.001 18.5 1.5 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218883735|ref|YP_002428117.1| - 3.4e-06 26.8 8.5 5.1e-06 26.2 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218883735|ref|YP_002428117.1| - 2.4e-05 24.4 12.7 4e-05 23.7 8.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|218883735|ref|YP_002428117.1| - 0.0014 18.5 5.7 0.0024 17.7 4.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218883735|ref|YP_002428117.1| - 0.0048 16.7 13.7 0.19 11.6 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|218883735|ref|YP_002428117.1| - 0.0069 16.7 6.6 0.097 13.0 0.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Ribosomal_L31 PF01197.13 gi|218883735|ref|YP_002428117.1| - 0.0077 16.2 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L31 Fer4_8 PF13183.1 gi|218883735|ref|YP_002428117.1| - 0.02 14.9 11.0 0.1 12.6 1.5 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218883735|ref|YP_002428117.1| - 0.02 15.4 11.4 0.093 13.3 1.5 2.9 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|218883735|ref|YP_002428117.1| - 0.69 10.3 15.5 4 8.0 2.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|218883735|ref|YP_002428117.1| - 1 9.9 13.4 10 6.7 0.8 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF381 PF04038.7 gi|218883736|ref|YP_002428118.1| - 1.8e-11 43.8 0.0 2.9e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|218883736|ref|YP_002428118.1| - 8.3e-11 41.1 0.0 1.3e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) MAF_flag10 PF01973.13 gi|218883737|ref|YP_002428119.1| - 1.1e-29 103.1 0.0 1.5e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 GCHY-1 PF02649.9 gi|218883738|ref|YP_002428120.1| - 2.5e-26 92.5 0.0 3.3e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Desulfoferrodox PF01880.13 gi|218883740|ref|YP_002428122.1| - 5.6e-27 93.8 0.0 6.7e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|218883740|ref|YP_002428122.1| - 0.00048 20.1 0.0 0.00063 19.7 0.0 1.2 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY HTH_AsnC-type PF13404.1 gi|218883742|ref|YP_002428124.1| - 5.4e-13 48.2 0.1 8.2e-13 47.6 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|218883742|ref|YP_002428124.1| - 2.3e-10 40.0 0.2 6.3e-10 38.6 0.0 1.8 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|218883742|ref|YP_002428124.1| - 9.7e-10 37.6 1.5 1.1e-09 37.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|218883742|ref|YP_002428124.1| - 6e-05 22.6 0.2 0.00081 19.0 0.0 2.5 3 1 0 3 3 3 1 MarR family HTH_27 PF13463.1 gi|218883742|ref|YP_002428124.1| - 0.00042 20.5 0.0 0.0046 17.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|218883742|ref|YP_002428124.1| - 0.0013 18.3 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|218883742|ref|YP_002428124.1| - 0.0022 17.5 0.1 0.0043 16.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HxlR PF01638.12 gi|218883742|ref|YP_002428124.1| - 0.0049 16.4 0.1 0.0078 15.8 0.1 1.4 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|218883742|ref|YP_002428124.1| - 0.0049 16.8 0.1 0.026 14.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|218883742|ref|YP_002428124.1| - 0.032 13.9 0.8 0.081 12.6 0.1 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB NapD PF03927.8 gi|218883742|ref|YP_002428124.1| - 0.038 13.8 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 NapD protein RepL PF05732.6 gi|218883742|ref|YP_002428124.1| - 0.043 13.0 0.1 0.15 11.2 0.0 1.8 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) Fe_dep_repress PF01325.14 gi|218883742|ref|YP_002428124.1| - 0.088 12.7 0.1 15 5.6 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.11 gi|218883742|ref|YP_002428124.1| - 0.099 12.2 0.1 0.23 11.0 0.1 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.15 gi|218883742|ref|YP_002428124.1| - 0.1 12.7 0.1 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator DUF849 PF05853.7 gi|218883742|ref|YP_002428124.1| - 0.11 11.3 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) DDRGK PF09756.4 gi|218883742|ref|YP_002428124.1| - 0.12 11.7 1.1 0.15 11.4 0.1 1.6 2 0 0 2 2 2 0 DDRGK domain DUF438 PF04282.8 gi|218883743|ref|YP_002428125.1| - 1.5e-12 47.1 0.1 2.2e-12 46.5 0.1 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF438) Mei4 PF13971.1 gi|218883743|ref|YP_002428125.1| - 0.046 12.6 0.0 0.051 12.5 0.0 1.1 1 0 0 1 1 1 0 Meiosis-specific protein Mei4 Trypsin_2 PF13365.1 gi|218883744|ref|YP_002428126.1| - 2.5e-21 75.8 0.3 3.9e-21 75.2 0.2 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|218883744|ref|YP_002428126.1| - 3.3e-17 62.8 0.0 6.4e-17 61.8 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|218883744|ref|YP_002428126.1| - 2.6e-14 52.8 0.1 1.2e-13 50.7 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|218883744|ref|YP_002428126.1| - 4.7e-10 39.5 0.0 1.1e-09 38.3 0.0 1.8 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|218883744|ref|YP_002428126.1| - 0.00025 20.7 0.5 0.0017 18.1 0.0 2.4 2 0 0 2 2 2 1 Tricorn protease PDZ domain Peptidase_S46 PF10459.4 gi|218883744|ref|YP_002428126.1| - 0.00026 19.5 0.7 0.39 9.0 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 PDZ_1 PF12812.2 gi|218883744|ref|YP_002428126.1| - 0.062 13.2 0.0 0.29 11.0 0.0 2.2 2 1 0 2 2 2 0 PDZ-like domain Mem_trans PF03547.13 gi|218883745|ref|YP_002428127.1| - 4.4e-10 38.4 34.4 1e-07 30.6 4.1 2.2 2 1 1 3 3 3 2 Membrane transport protein PA14 PF07691.7 gi|218883746|ref|YP_002428128.1| - 2.2e-13 50.1 0.0 3e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 PA14 domain HD PF01966.17 gi|218883747|ref|YP_002428129.1| - 0.014 15.4 0.1 0.027 14.4 0.1 1.4 1 0 0 1 1 1 0 HD domain tRNA-synt_2 PF00152.15 gi|218883748|ref|YP_002428130.1| - 7.4e-35 120.3 0.0 1.2e-34 119.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) Resolvase PF00239.16 gi|218883749|ref|YP_002428131.1| - 1.6e-20 73.3 0.6 2.9e-20 72.5 0.3 1.5 1 1 1 2 2 2 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218883749|ref|YP_002428131.1| - 3.2e-06 27.2 0.0 7.5e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218883749|ref|YP_002428131.1| - 0.015 14.8 0.3 0.081 12.5 0.0 2.3 3 0 0 3 3 3 0 MerR family regulatory protein HTH_23 PF13384.1 gi|218883749|ref|YP_002428131.1| - 0.035 13.7 0.0 0.093 12.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain MerR_1 PF13411.1 gi|218883749|ref|YP_002428131.1| - 0.038 13.7 0.0 0.087 12.6 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|218883749|ref|YP_002428131.1| - 0.042 13.8 0.8 0.079 12.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DEAD PF00270.24 gi|218883749|ref|YP_002428131.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase OrfB_Zn_ribbon PF07282.6 gi|218883750|ref|YP_002428132.1| - 3e-19 68.4 0.0 6e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain MFS_1 PF07690.11 gi|218883751|ref|YP_002428133.1| - 0.037 12.7 4.2 0.042 12.5 2.9 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily Pyr_redox_2 PF07992.9 gi|218883752|ref|YP_002428134.1| - 5.3e-29 101.5 1.9 7.6e-29 101.0 1.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|218883752|ref|YP_002428134.1| - 3.4e-17 62.6 2.1 3.8e-14 52.8 0.3 2.9 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|218883752|ref|YP_002428134.1| - 4.3e-07 30.2 0.7 0.00031 20.8 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|218883752|ref|YP_002428134.1| - 4.5e-07 29.0 10.7 0.018 13.9 0.9 4.2 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|218883752|ref|YP_002428134.1| - 7.9e-07 27.8 1.1 0.0028 16.1 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein Lycopene_cycl PF05834.7 gi|218883752|ref|YP_002428134.1| - 2e-06 26.9 1.9 0.002 17.0 0.0 2.9 2 1 1 3 3 3 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|218883752|ref|YP_002428134.1| - 2.1e-06 27.0 0.3 0.0047 16.0 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_dim PF02852.17 gi|218883752|ref|YP_002428134.1| - 5.6e-06 26.3 0.0 1.6e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_binding_2 PF00890.19 gi|218883752|ref|YP_002428134.1| - 6e-05 22.0 0.4 0.00048 19.0 0.1 2.4 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|218883752|ref|YP_002428134.1| - 0.00048 18.8 0.8 0.013 14.1 0.0 2.4 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.17 gi|218883752|ref|YP_002428134.1| - 0.0013 17.7 7.6 0.028 13.2 0.1 3.3 2 1 0 3 3 3 1 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|218883752|ref|YP_002428134.1| - 0.0016 17.4 0.0 0.035 13.0 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|218883752|ref|YP_002428134.1| - 0.018 14.8 0.5 5.9 6.6 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lactamase_B_2 PF12706.2 gi|218883753|ref|YP_002428135.1| - 9.6e-08 31.7 0.2 1.3e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|218883753|ref|YP_002428135.1| - 1.7e-05 24.5 0.0 3.8e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|218883753|ref|YP_002428135.1| - 0.0025 17.5 1.9 0.074 12.6 0.3 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily DHH PF01368.15 gi|218883753|ref|YP_002428135.1| - 0.54 9.8 2.9 3 7.5 0.0 2.3 2 1 0 2 2 2 0 DHH family DUF423 PF04241.10 gi|218883754|ref|YP_002428136.1| - 0.097 12.5 2.3 0.11 12.4 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF423) PGPGW PF09656.5 gi|218883754|ref|YP_002428136.1| - 0.19 11.0 3.3 0.55 9.5 2.3 1.9 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF1469 PF07332.6 gi|218883754|ref|YP_002428136.1| - 0.72 9.5 5.9 0.82 9.4 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Cation_efflux PF01545.16 gi|218883754|ref|YP_002428136.1| - 0.84 8.6 6.4 0.93 8.4 4.4 1.1 1 0 0 1 1 1 0 Cation efflux family DUF2463 PF09591.5 gi|218883754|ref|YP_002428136.1| - 0.89 9.1 8.1 0.99 8.9 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2463) DUF2892 PF11127.3 gi|218883754|ref|YP_002428136.1| - 1.1 9.0 5.0 1.6 8.6 3.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF983 PF06170.7 gi|218883754|ref|YP_002428136.1| - 4.8 7.3 5.9 6.1 7.0 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF983) Apq12 PF12716.2 gi|218883754|ref|YP_002428136.1| - 5.2 6.8 11.2 1.5 8.5 2.5 2.1 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis DUF58 PF01882.13 gi|218883756|ref|YP_002428138.1| - 4.7e-15 55.4 0.0 9.6e-15 54.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|218883757|ref|YP_002428139.1| - 1.8e-63 212.0 0.1 3e-63 211.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|218883757|ref|YP_002428139.1| - 1.9e-17 63.2 0.0 7.9e-17 61.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|218883757|ref|YP_002428139.1| - 8.2e-08 32.5 0.0 2.2e-07 31.1 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|218883757|ref|YP_002428139.1| - 5.1e-07 29.3 0.1 7.3e-06 25.5 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|218883757|ref|YP_002428139.1| - 8.5e-07 28.0 0.0 2.2e-05 23.4 0.0 2.6 1 1 1 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|218883757|ref|YP_002428139.1| - 5.9e-06 25.5 0.4 0.083 12.0 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|218883757|ref|YP_002428139.1| - 0.00046 19.3 0.1 0.0038 16.3 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF4548 PF15081.1 gi|218883757|ref|YP_002428139.1| - 0.028 13.9 0.0 0.07 12.6 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4548) AAA_16 PF13191.1 gi|218883757|ref|YP_002428139.1| - 0.036 14.0 0.0 0.39 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|218883757|ref|YP_002428139.1| - 0.13 11.3 0.6 0.27 10.3 0.0 1.7 2 0 0 2 2 2 0 KaiC NfeD PF01957.13 gi|218883758|ref|YP_002428140.1| - 1.7e-19 70.3 4.7 1.7e-19 70.3 3.3 2.3 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|218883758|ref|YP_002428140.1| - 0.00023 20.9 0.1 0.00033 20.3 0.1 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|218883758|ref|YP_002428140.1| - 0.0073 15.1 0.6 0.016 13.9 0.2 1.7 2 0 0 2 2 2 1 Serine dehydrogenase proteinase Band_7 PF01145.20 gi|218883759|ref|YP_002428141.1| - 2.4e-36 125.3 0.9 3e-36 124.9 0.6 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|218883759|ref|YP_002428141.1| - 0.001 18.6 0.1 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family PRKCSH_1 PF13015.1 gi|218883759|ref|YP_002428141.1| - 0.024 14.1 0.1 0.53 9.7 0.0 2.2 1 1 1 2 2 2 0 Glucosidase II beta subunit-like protein EamA PF00892.15 gi|218883760|ref|YP_002428142.1| - 5.2e-13 49.1 27.9 7.6e-08 32.4 6.2 2.6 2 1 0 2 2 2 2 EamA-like transporter family Cyt_c_ox_IV PF12270.3 gi|218883760|ref|YP_002428142.1| - 0.08 12.6 0.5 0.08 12.6 0.4 2.7 3 0 0 3 3 3 0 Cytochrome c oxidase subunit IV VPEP PF07589.6 gi|218883760|ref|YP_002428142.1| - 1.9 8.5 5.7 0.93 9.4 0.1 3.3 3 0 0 3 3 3 0 PEP-CTERM motif MFS_1 PF07690.11 gi|218883761|ref|YP_002428143.1| - 1.9e-12 46.5 46.3 1.6e-10 40.2 19.1 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4014 PF13198.1 gi|218883761|ref|YP_002428143.1| - 0.12 12.8 2.1 0.22 11.9 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) MS_channel PF00924.13 gi|218883762|ref|YP_002428144.1| - 8.6e-14 51.3 5.5 1.1e-13 50.9 3.8 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|218883762|ref|YP_002428144.1| - 0.00031 20.3 2.0 0.00031 20.3 1.4 2.7 3 0 0 3 3 3 1 Conserved TM helix DUF1113 PF06541.6 gi|218883762|ref|YP_002428144.1| - 1.1 8.9 5.8 2.6 7.7 2.5 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1113) DUF2964 PF11177.3 gi|218883762|ref|YP_002428144.1| - 2.4 8.1 8.3 0.59 10.1 3.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) Pox_P21 PF05313.7 gi|218883762|ref|YP_002428144.1| - 4.6 6.4 11.1 8.5 5.5 7.7 1.4 1 0 0 1 1 1 0 Poxvirus P21 membrane protein TrkA_N PF02254.13 gi|218883763|ref|YP_002428145.1| - 0.012 15.5 0.1 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF402 PF04167.8 gi|218883766|ref|YP_002428148.1| - 1.1e-16 60.3 0.2 2.1e-16 59.5 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|218883766|ref|YP_002428148.1| - 5.1e-07 29.2 0.0 7.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family tRNA-synt_2b PF00587.20 gi|218883767|ref|YP_002428149.1| - 4.5e-32 110.9 0.0 7.2e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|218883767|ref|YP_002428149.1| - 1.2e-22 80.0 4.9 2e-22 79.2 3.4 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Sec5 PF15469.1 gi|218883767|ref|YP_002428149.1| - 0.043 13.5 0.2 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Exocyst complex component Sec5 Laminin_II PF06009.7 gi|218883767|ref|YP_002428149.1| - 0.14 11.9 0.9 0.26 11.0 0.6 1.3 1 0 0 1 1 1 0 Laminin Domain II DUF59 PF01883.14 gi|218883768|ref|YP_002428150.1| - 9.1e-13 48.0 0.1 1.2e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 DUF2797 PF10977.3 gi|218883769|ref|YP_002428151.1| - 0.098 12.2 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) IF-2B PF01008.12 gi|218883770|ref|YP_002428152.1| - 4e-88 295.0 0.2 4.7e-88 294.8 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family IF-2B PF01008.12 gi|218883771|ref|YP_002428153.1| - 2.6e-52 177.5 0.0 3.3e-52 177.2 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DEDD_Tnp_IS110 PF01548.12 gi|218883771|ref|YP_002428153.1| - 0.055 13.1 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 Transposase Flavoprotein PF02441.14 gi|218883771|ref|YP_002428153.1| - 0.086 12.5 0.0 0.39 10.3 0.0 2.0 1 1 1 2 2 2 0 Flavoprotein DUF2407_C PF13373.1 gi|218883771|ref|YP_002428153.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 DUF2407 C-terminal domain AAA_26 PF13500.1 gi|218883772|ref|YP_002428154.1| - 0.00037 20.1 0.0 0.00071 19.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|218883772|ref|YP_002428154.1| - 0.0039 16.6 0.1 0.011 15.1 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.5 gi|218883772|ref|YP_002428154.1| - 0.083 12.0 0.0 0.33 10.1 0.0 1.8 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_25 PF13481.1 gi|218883772|ref|YP_002428154.1| - 0.13 11.6 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SlyX PF04102.7 gi|218883773|ref|YP_002428155.1| - 0.00011 22.5 2.4 0.00018 21.7 1.7 1.3 1 0 0 1 1 1 1 SlyX IncA PF04156.9 gi|218883773|ref|YP_002428155.1| - 0.00015 21.4 5.9 0.00015 21.4 4.1 1.6 1 1 0 1 1 1 1 IncA protein Spc7 PF08317.6 gi|218883773|ref|YP_002428155.1| - 0.0028 16.3 1.3 0.0041 15.8 0.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF972 PF06156.8 gi|218883773|ref|YP_002428155.1| - 0.0031 17.8 2.9 0.0051 17.1 2.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Cast PF10174.4 gi|218883773|ref|YP_002428155.1| - 0.0064 14.6 2.3 0.0083 14.2 1.6 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Phage_GP20 PF06810.6 gi|218883773|ref|YP_002428155.1| - 0.011 15.1 2.5 0.018 14.5 1.8 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Cluap1 PF10234.4 gi|218883773|ref|YP_002428155.1| - 0.014 14.6 2.4 0.022 13.9 1.6 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 DUF4201 PF13870.1 gi|218883773|ref|YP_002428155.1| - 0.015 14.7 4.1 0.021 14.2 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DivIC PF04977.10 gi|218883773|ref|YP_002428155.1| - 0.017 14.5 2.5 0.029 13.8 0.9 2.0 1 1 0 1 1 1 0 Septum formation initiator TMF_DNA_bd PF12329.3 gi|218883773|ref|YP_002428155.1| - 0.02 14.6 8.4 0.031 14.0 5.8 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ATG16 PF08614.6 gi|218883773|ref|YP_002428155.1| - 0.026 14.3 5.9 0.038 13.8 4.1 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|218883773|ref|YP_002428155.1| - 0.066 13.0 0.9 0.13 12.0 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DNA_pol3_tau_5 PF12170.3 gi|218883773|ref|YP_002428155.1| - 0.072 13.0 0.2 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 DNA polymerase III tau subunit V interacting with alpha USP8_interact PF08941.5 gi|218883773|ref|YP_002428155.1| - 0.075 12.3 1.1 0.12 11.6 0.8 1.3 1 0 0 1 1 1 0 USP8 interacting Myosin_tail_1 PF01576.14 gi|218883773|ref|YP_002428155.1| - 0.11 10.2 3.7 0.15 9.7 2.5 1.0 1 0 0 1 1 1 0 Myosin tail Erp_C PF06780.6 gi|218883773|ref|YP_002428155.1| - 0.14 11.9 2.2 0.24 11.2 1.5 1.3 1 0 0 1 1 1 0 Erp protein C-terminus Pox_A_type_inc PF04508.7 gi|218883773|ref|YP_002428155.1| - 0.47 10.3 3.3 0.67 9.8 0.1 2.6 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DUF457 PF04307.9 gi|218883774|ref|YP_002428156.1| - 2e-21 75.9 12.5 2.9e-21 75.4 8.7 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF212 PF02681.9 gi|218883774|ref|YP_002428156.1| - 0.041 13.6 0.2 0.058 13.1 0.2 1.3 1 0 0 1 1 1 0 Divergent PAP2 family Colicin_V PF02674.11 gi|218883774|ref|YP_002428156.1| - 0.24 11.2 7.5 0.026 14.3 1.6 1.9 1 1 1 2 2 2 0 Colicin V production protein Pox_LP_H2 PF03356.10 gi|218883774|ref|YP_002428156.1| - 0.59 9.8 3.5 0.15 11.6 0.6 1.4 2 0 0 2 2 2 0 Viral late protein H2 Rib_5-P_isom_A PF06026.9 gi|218883775|ref|YP_002428157.1| - 1.8e-42 144.6 0.0 2.1e-42 144.3 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Peptidase_M55 PF04951.8 gi|218883776|ref|YP_002428158.1| - 1.6e-85 286.5 0.0 1.8e-85 286.3 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase Creatininase PF02633.9 gi|218883776|ref|YP_002428158.1| - 0.093 11.7 0.0 0.18 10.8 0.0 1.5 1 0 0 1 1 1 0 Creatinine amidohydrolase HD_3 PF13023.1 gi|218883777|ref|YP_002428159.1| - 1.7e-18 66.8 0.0 3.7e-18 65.8 0.0 1.5 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|218883777|ref|YP_002428159.1| - 0.00025 21.0 0.1 0.00099 19.1 0.1 1.9 1 1 0 1 1 1 1 HD domain 2-Hacid_dh PF00389.25 gi|218883777|ref|YP_002428159.1| - 0.087 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PYC_OADA PF02436.13 gi|218883778|ref|YP_002428160.1| - 5.3e-60 202.2 0.1 9.7e-60 201.3 0.0 1.4 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|218883778|ref|YP_002428160.1| - 3.3e-40 138.2 0.0 4.7e-40 137.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like TGT PF01702.13 gi|218883778|ref|YP_002428160.1| - 0.0037 16.5 0.0 0.0067 15.7 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Aminotran_1_2 PF00155.16 gi|218883779|ref|YP_002428161.1| - 3.4e-49 167.7 0.0 4.1e-49 167.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1743 PF08489.6 gi|218883780|ref|YP_002428162.1| - 4.1e-33 113.6 0.0 6.7e-33 112.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.6 gi|218883780|ref|YP_002428162.1| - 0.0021 17.6 2.5 0.0047 16.5 1.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|218883780|ref|YP_002428162.1| - 0.0046 16.6 1.2 0.011 15.4 0.8 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit tRNA_anti-codon PF01336.20 gi|218883780|ref|YP_002428162.1| - 0.0047 16.7 0.1 0.36 10.7 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain HypA PF01155.14 gi|218883780|ref|YP_002428162.1| - 0.032 13.9 0.8 0.072 12.7 0.6 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|218883780|ref|YP_002428162.1| - 0.27 11.0 3.3 0.24 11.2 0.5 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|218883780|ref|YP_002428162.1| - 0.29 10.6 3.4 0.69 9.4 2.3 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|218883780|ref|YP_002428162.1| - 5.1 6.6 9.8 0.14 11.6 1.4 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|218883780|ref|YP_002428162.1| - 8.3 6.3 10.3 0.88 9.4 3.6 2.0 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DS PF01916.12 gi|218883781|ref|YP_002428163.1| - 4.2e-84 282.2 0.1 5.2e-84 281.8 0.1 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase Mrr_cat PF04471.7 gi|218883782|ref|YP_002428164.1| - 0.00067 19.4 0.0 0.0014 18.3 0.0 1.5 2 0 0 2 2 2 1 Restriction endonuclease HTH_CodY PF08222.6 gi|218883784|ref|YP_002428166.1| - 0.025 13.9 0.3 0.14 11.5 0.0 2.2 2 0 0 2 2 2 0 CodY helix-turn-helix domain HxlR PF01638.12 gi|218883784|ref|YP_002428166.1| - 0.038 13.6 0.1 0.088 12.4 0.1 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix MarR PF01047.17 gi|218883784|ref|YP_002428166.1| - 0.17 11.5 1.5 0.29 10.8 0.3 2.0 2 0 0 2 2 2 0 MarR family SdpI PF13630.1 gi|218883784|ref|YP_002428166.1| - 1.9 8.2 7.3 3.2 7.5 5.0 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2207 PF09972.4 gi|218883784|ref|YP_002428166.1| - 2.5 6.6 6.2 3.4 6.1 4.3 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DHO_dh PF01180.16 gi|218883785|ref|YP_002428167.1| - 5e-55 186.5 0.0 5.7e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|218883785|ref|YP_002428167.1| - 1.6e-09 37.0 0.2 3.9e-09 35.7 0.0 1.6 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|218883785|ref|YP_002428167.1| - 5.2e-05 22.6 1.0 0.0013 18.0 0.0 2.8 4 0 0 4 4 4 1 Histidine biosynthesis protein NMO PF03060.10 gi|218883785|ref|YP_002428167.1| - 0.00084 18.5 3.1 0.0047 16.1 0.6 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.20 gi|218883785|ref|YP_002428167.1| - 0.0072 15.2 0.2 0.02 13.8 0.1 1.7 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain DHDPS PF00701.17 gi|218883785|ref|YP_002428167.1| - 0.014 13.9 0.1 0.71 8.4 0.0 2.2 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family FMN_dh PF01070.13 gi|218883785|ref|YP_002428167.1| - 0.038 12.8 1.8 0.085 11.6 0.1 2.3 4 0 0 4 4 4 0 FMN-dependent dehydrogenase DHODB_Fe-S_bind PF10418.4 gi|218883786|ref|YP_002428168.1| - 2.7e-10 39.5 2.6 2.7e-10 39.5 1.8 2.2 3 0 0 3 3 3 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|218883786|ref|YP_002428168.1| - 2.7e-07 31.1 0.0 3.9e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.7 gi|218883786|ref|YP_002428168.1| - 0.016 15.1 0.0 0.033 14.0 0.0 1.6 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Pribosyltran PF00156.22 gi|218883787|ref|YP_002428169.1| - 1.3e-16 60.4 1.1 2.6e-16 59.4 0.8 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|218883787|ref|YP_002428169.1| - 0.01 15.0 0.1 0.015 14.4 0.1 1.3 1 1 0 1 1 1 0 Uracil phosphoribosyltransferase SHOCT PF09851.4 gi|218883787|ref|YP_002428169.1| - 0.033 13.6 0.9 0.049 13.1 0.1 1.7 2 0 0 2 2 2 0 Short C-terminal domain OMPdecase PF00215.19 gi|218883788|ref|YP_002428170.1| - 5.3e-28 97.9 0.0 6.8e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiC PF01964.13 gi|218883788|ref|YP_002428170.1| - 0.096 11.1 0.1 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 ThiC family Pribosyltran PF00156.22 gi|218883789|ref|YP_002428171.1| - 5.5e-22 77.8 0.7 9.6e-22 77.0 0.2 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|218883789|ref|YP_002428171.1| - 0.0064 15.7 0.0 0.0081 15.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase GMP_synt_C PF00958.17 gi|218883790|ref|YP_002428172.1| - 1.7e-32 110.9 0.7 7e-32 109.0 0.1 2.1 2 0 0 2 2 2 1 GMP synthase C terminal domain GATase PF00117.23 gi|218883790|ref|YP_002428172.1| - 5.9e-31 107.4 0.0 1.1e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I NAD_synthase PF02540.12 gi|218883790|ref|YP_002428172.1| - 6.4e-12 44.8 0.1 2e-05 23.5 0.0 2.5 3 0 0 3 3 3 2 NAD synthase Peptidase_C26 PF07722.8 gi|218883790|ref|YP_002428172.1| - 3e-11 43.1 0.0 7.1e-11 41.9 0.0 1.7 1 0 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.15 gi|218883790|ref|YP_002428172.1| - 0.0003 20.3 0.0 0.00062 19.2 0.0 1.5 1 1 0 1 1 1 1 PP-loop family DJ-1_PfpI PF01965.19 gi|218883790|ref|YP_002428172.1| - 0.0017 17.8 0.0 0.0035 16.8 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family QueC PF06508.8 gi|218883790|ref|YP_002428172.1| - 0.0075 15.5 0.0 0.081 12.1 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC GATase_3 PF07685.9 gi|218883790|ref|YP_002428172.1| - 0.022 14.3 0.0 0.054 13.0 0.0 1.6 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PALP PF00291.20 gi|218883791|ref|YP_002428173.1| - 9.1e-18 64.5 1.0 2.9e-16 59.5 0.7 2.6 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PadR PF03551.9 gi|218883791|ref|YP_002428173.1| - 0.0025 17.5 0.1 0.0055 16.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|218883791|ref|YP_002428173.1| - 0.0035 17.0 0.2 0.0089 15.7 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|218883791|ref|YP_002428173.1| - 0.0047 16.5 0.1 0.016 14.8 0.0 2.0 2 0 0 2 2 2 1 HTH domain NRDD PF13597.1 gi|218883791|ref|YP_002428173.1| - 0.07 11.1 0.1 0.11 10.5 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_ligase_ZBD PF03119.11 gi|218883791|ref|YP_002428173.1| - 0.4 10.4 1.9 1.7 8.3 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|218883791|ref|YP_002428173.1| - 1 8.6 4.4 0.33 10.2 0.8 1.8 2 0 0 2 2 2 0 zinc-ribbon domain SNO PF01174.14 gi|218883792|ref|YP_002428174.1| - 4.7e-49 166.5 0.0 5.2e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|218883792|ref|YP_002428174.1| - 1.1e-09 38.1 0.0 1.5e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|218883792|ref|YP_002428174.1| - 2.9e-08 33.4 0.0 6.4e-08 32.2 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|218883792|ref|YP_002428174.1| - 1.5e-05 24.8 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|218883792|ref|YP_002428174.1| - 4.6e-05 22.9 0.0 5.7e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|218883792|ref|YP_002428174.1| - 0.00016 20.9 0.0 0.00024 20.4 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|218883792|ref|YP_002428174.1| - 0.027 13.9 0.0 0.18 11.1 0.1 2.3 2 1 0 2 2 2 0 Peptidase C26 SOR_SNZ PF01680.12 gi|218883793|ref|YP_002428175.1| - 4.1e-85 284.6 0.2 5.7e-85 284.1 0.2 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|218883793|ref|YP_002428175.1| - 9.4e-06 24.8 2.9 2e-05 23.8 0.0 2.3 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|218883793|ref|YP_002428175.1| - 0.002 17.1 0.1 0.44 9.4 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|218883793|ref|YP_002428175.1| - 0.0025 17.1 0.2 0.8 8.9 0.0 2.9 2 1 1 3 3 3 2 Histidine biosynthesis protein Dus PF01207.12 gi|218883793|ref|YP_002428175.1| - 0.0033 16.3 0.2 0.29 9.9 0.0 2.5 2 1 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|218883793|ref|YP_002428175.1| - 0.006 15.7 0.1 0.006 15.7 0.1 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|218883793|ref|YP_002428175.1| - 0.018 14.1 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|218883793|ref|YP_002428175.1| - 0.059 11.9 0.0 0.14 10.6 0.0 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain OMPdecase PF00215.19 gi|218883793|ref|YP_002428175.1| - 0.061 12.7 0.0 1.2 8.5 0.0 2.2 1 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2464 PF10240.4 gi|218883793|ref|YP_002428175.1| - 0.18 11.1 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2464) Carb_kinase PF01256.12 gi|218883795|ref|YP_002428177.1| - 1.1e-45 155.8 0.7 2.6e-43 148.0 0.0 2.1 2 0 0 2 2 2 2 Carbohydrate kinase YjeF_N PF03853.10 gi|218883795|ref|YP_002428177.1| - 2.8e-41 140.9 0.0 5.3e-41 140.0 0.0 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.7 gi|218883795|ref|YP_002428177.1| - 0.01 15.0 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase TPP_enzyme_M PF00205.17 gi|218883795|ref|YP_002428177.1| - 0.051 13.3 0.1 0.65 9.7 0.0 2.6 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain N6_N4_Mtase PF01555.13 gi|218883796|ref|YP_002428178.1| - 3.7e-31 108.4 0.1 1.1e-16 61.0 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|218883796|ref|YP_002428178.1| - 1.1e-14 54.4 0.0 1.6e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|218883796|ref|YP_002428178.1| - 1.2e-10 41.2 0.0 4.1e-10 39.5 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|218883796|ref|YP_002428178.1| - 3e-06 27.6 0.0 0.00038 20.8 0.0 2.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218883796|ref|YP_002428178.1| - 0.00029 20.4 0.0 0.22 11.0 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.1 gi|218883796|ref|YP_002428178.1| - 0.0013 18.4 0.0 0.0046 16.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218883796|ref|YP_002428178.1| - 0.0032 18.0 0.0 0.0068 16.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|218883796|ref|YP_002428178.1| - 0.013 15.0 0.0 0.031 13.8 0.0 1.6 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|218883796|ref|YP_002428178.1| - 0.16 12.4 0.0 1.2 9.6 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain YorP PF09629.5 gi|218883797|ref|YP_002428179.1| - 0.071 13.1 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 YorP protein ABC_tran PF00005.22 gi|218883798|ref|YP_002428180.1| - 1e-21 77.6 0.0 1.9e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883798|ref|YP_002428180.1| - 7.6e-12 45.7 0.1 1.3e-07 31.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain MobB PF03205.9 gi|218883798|ref|YP_002428180.1| - 0.022 14.4 0.3 0.052 13.2 0.2 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|218883798|ref|YP_002428180.1| - 0.05 12.3 0.1 0.086 11.6 0.1 1.3 1 0 0 1 1 1 0 ArgK protein SMC_N PF02463.14 gi|218883798|ref|YP_002428180.1| - 0.064 12.4 0.9 4.9 6.3 0.3 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|218883798|ref|YP_002428180.1| - 0.08 12.3 0.1 9.1 5.6 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|218883798|ref|YP_002428180.1| - 0.13 12.5 1.3 0.17 12.2 0.5 1.9 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|218883799|ref|YP_002428181.1| - 3e-18 65.6 0.0 5.3e-18 64.8 0.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|218883799|ref|YP_002428181.1| - 3.8e-05 22.9 33.4 0.00016 20.8 23.2 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|218883799|ref|YP_002428181.1| - 0.0017 17.7 19.7 0.0017 17.7 13.6 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein AFOR_C PF01314.13 gi|218883801|ref|YP_002428183.1| - 4e-33 114.6 0.1 1.4e-31 109.5 0.0 2.0 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Metallophos_2 PF12850.2 gi|218883802|ref|YP_002428184.1| - 3.6e-13 49.6 0.0 5.2e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|218883802|ref|YP_002428184.1| - 1.5e-12 47.2 0.1 1.2e-08 34.4 0.0 2.1 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|218883802|ref|YP_002428184.1| - 7.7e-09 35.2 0.2 1.4e-08 34.4 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase ATP_bind_3 PF01171.15 gi|218883803|ref|YP_002428185.1| - 9.3e-17 61.0 0.0 8.1e-16 58.0 0.0 2.3 2 1 0 2 2 2 1 PP-loop family PAPS_reduct PF01507.14 gi|218883803|ref|YP_002428185.1| - 0.0019 18.0 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|218883803|ref|YP_002428185.1| - 0.0042 15.6 0.0 0.0061 15.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase YL1_C PF08265.6 gi|218883803|ref|YP_002428185.1| - 0.011 15.2 0.4 0.025 14.1 0.2 1.6 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain Asn_synthase PF00733.16 gi|218883803|ref|YP_002428185.1| - 0.056 12.9 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase ETC_C1_NDUFA4 PF04800.7 gi|218883803|ref|YP_002428185.1| - 0.082 12.7 0.4 3.8 7.4 0.0 2.3 1 1 1 2 2 2 0 ETC complex I subunit conserved region KorB PF08535.5 gi|218883803|ref|YP_002428185.1| - 0.095 12.8 0.1 0.72 10.0 0.0 2.3 2 0 0 2 2 2 0 KorB domain Glucosamine_iso PF01182.15 gi|218883803|ref|YP_002428185.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase zf-Di19 PF05605.7 gi|218883803|ref|YP_002428185.1| - 2.8 8.1 0.0 2.8 8.1 0.0 3.3 4 1 0 4 4 4 0 Drought induced 19 protein (Di19), zinc-binding MacB_PCD PF12704.2 gi|218883804|ref|YP_002428186.1| - 4.3e-38 131.1 1.7 4.3e-38 131.1 1.2 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|218883804|ref|YP_002428186.1| - 7.9e-20 70.8 9.6 7.9e-20 70.8 6.7 2.1 2 1 0 2 2 2 1 FtsX-like permease family DUF21 PF01595.15 gi|218883804|ref|YP_002428186.1| - 0.33 10.2 10.9 0.59 9.3 7.0 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF21 NPCBM_assoc PF10633.4 gi|218883805|ref|YP_002428187.1| - 8.5e-12 44.9 3.1 0.019 14.9 0.0 5.6 6 0 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Gemini_mov PF01708.11 gi|218883805|ref|YP_002428187.1| - 0.02 14.4 0.3 0.044 13.3 0.2 1.5 1 0 0 1 1 1 0 Geminivirus putative movement protein Wzt_C PF14524.1 gi|218883805|ref|YP_002428187.1| - 0.026 14.1 0.2 2.1 8.0 0.0 2.9 2 0 0 2 2 2 0 Wzt C-terminal domain DUF3857 PF12969.2 gi|218883805|ref|YP_002428187.1| - 0.072 12.6 0.2 0.3 10.6 0.1 2.0 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3857) ABC_tran PF00005.22 gi|218883806|ref|YP_002428188.1| - 3.7e-35 121.1 0.0 4.6e-35 120.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883806|ref|YP_002428188.1| - 8e-13 48.9 0.2 7.5e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|218883806|ref|YP_002428188.1| - 5.7e-05 22.5 0.2 0.0001 21.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|218883806|ref|YP_002428188.1| - 6.2e-05 22.2 0.2 0.00014 21.0 0.1 1.6 1 1 1 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|218883806|ref|YP_002428188.1| - 0.00021 20.5 0.1 0.19 10.9 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|218883806|ref|YP_002428188.1| - 0.00052 20.3 0.0 0.0009 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218883806|ref|YP_002428188.1| - 0.00067 19.1 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_15 PF13175.1 gi|218883806|ref|YP_002428188.1| - 0.0019 17.3 0.0 0.89 8.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|218883806|ref|YP_002428188.1| - 0.002 18.1 0.2 0.0084 16.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|218883806|ref|YP_002428188.1| - 0.002 18.2 0.2 0.01 16.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|218883806|ref|YP_002428188.1| - 0.0055 17.5 0.3 0.013 16.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|218883806|ref|YP_002428188.1| - 0.009 15.8 0.1 0.022 14.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|218883806|ref|YP_002428188.1| - 0.015 14.7 0.1 0.036 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|218883806|ref|YP_002428188.1| - 0.023 14.5 0.1 0.23 11.4 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|218883806|ref|YP_002428188.1| - 0.04 13.8 0.8 0.078 12.9 0.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|218883806|ref|YP_002428188.1| - 0.045 14.0 0.0 0.12 12.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|218883806|ref|YP_002428188.1| - 0.062 12.7 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.14 gi|218883806|ref|YP_002428188.1| - 0.091 12.1 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|218883806|ref|YP_002428188.1| - 0.094 11.2 0.1 0.27 9.7 0.1 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|218883806|ref|YP_002428188.1| - 0.1 12.2 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain Zot PF05707.7 gi|218883806|ref|YP_002428188.1| - 0.1 12.0 0.0 0.71 9.3 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PadR PF03551.9 gi|218883807|ref|YP_002428189.1| - 1.3e-13 50.4 0.3 2.2e-13 49.7 0.2 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|218883807|ref|YP_002428189.1| - 8.3e-05 22.5 0.1 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|218883807|ref|YP_002428189.1| - 0.00077 19.2 0.4 0.0016 18.1 0.2 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|218883807|ref|YP_002428189.1| - 0.011 16.0 0.0 0.025 14.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|218883807|ref|YP_002428189.1| - 0.016 15.2 0.1 0.056 13.5 0.0 1.8 2 1 0 2 2 2 0 Hypothetical protein (DUF2513) ABC_tran PF00005.22 gi|218883808|ref|YP_002428190.1| - 1.4e-34 119.3 0.0 2.3e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883808|ref|YP_002428190.1| - 2.8e-16 60.3 0.1 3.5e-14 53.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|218883808|ref|YP_002428190.1| - 6.6e-07 28.7 0.6 0.00028 20.0 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF4162 PF13732.1 gi|218883808|ref|YP_002428190.1| - 1.4e-06 28.6 0.0 2.9e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|218883808|ref|YP_002428190.1| - 4.4e-05 22.9 0.0 7.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|218883808|ref|YP_002428190.1| - 8.5e-05 22.9 0.4 0.00013 22.3 0.3 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218883808|ref|YP_002428190.1| - 0.00024 20.4 0.0 0.0014 17.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|218883808|ref|YP_002428190.1| - 0.00069 19.3 0.1 0.0016 18.1 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|218883808|ref|YP_002428190.1| - 0.00089 18.7 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.24 gi|218883808|ref|YP_002428190.1| - 0.002 18.3 0.1 0.06 13.5 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|218883808|ref|YP_002428190.1| - 0.032 13.8 0.0 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|218883808|ref|YP_002428190.1| - 0.041 13.5 0.2 4.8 6.8 0.0 2.4 2 0 0 2 2 2 0 NTPase IstB_IS21 PF01695.12 gi|218883808|ref|YP_002428190.1| - 0.041 13.3 0.1 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|218883808|ref|YP_002428190.1| - 0.049 13.7 0.7 0.88 9.7 0.4 2.5 2 1 0 2 2 1 0 AAA domain MutS_V PF00488.16 gi|218883808|ref|YP_002428190.1| - 0.05 13.0 0.1 1.4 8.2 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_16 PF13191.1 gi|218883808|ref|YP_002428190.1| - 0.066 13.1 0.0 0.096 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Peptidase_S24 PF00717.18 gi|218883808|ref|YP_002428190.1| - 0.072 12.7 0.3 3.7 7.2 0.0 3.4 3 1 0 3 3 3 0 Peptidase S24-like AAA_25 PF13481.1 gi|218883808|ref|YP_002428190.1| - 0.078 12.3 0.1 2 7.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|218883808|ref|YP_002428190.1| - 0.08 11.6 0.0 0.096 11.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein UPF0079 PF02367.12 gi|218883808|ref|YP_002428190.1| - 0.099 12.2 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SbcCD_C PF13558.1 gi|218883808|ref|YP_002428190.1| - 0.11 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|218883808|ref|YP_002428190.1| - 0.12 11.5 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|218883808|ref|YP_002428190.1| - 0.13 11.7 0.2 5 6.4 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain ABC2_membrane PF01061.19 gi|218883809|ref|YP_002428191.1| - 5.3e-35 120.4 30.8 5.3e-35 120.4 21.4 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|218883809|ref|YP_002428191.1| - 9.5e-19 67.6 31.6 9.5e-19 67.6 21.9 1.8 1 1 2 3 3 3 1 ABC-2 family transporter protein AFOR_N PF02730.10 gi|218883810|ref|YP_002428192.1| - 5.2e-24 84.7 0.0 7.8e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|218883810|ref|YP_002428192.1| - 1.3e-13 50.4 0.0 3.8e-13 48.8 0.0 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 tRNA-synt_1d PF00750.14 gi|218883811|ref|YP_002428193.1| - 1.5e-36 125.9 1.2 4.8e-18 65.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|218883811|ref|YP_002428193.1| - 1.9e-14 53.6 2.5 2.7e-14 53.1 0.2 2.4 2 1 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1e PF01406.14 gi|218883811|ref|YP_002428193.1| - 0.0087 15.2 0.0 0.081 12.0 0.0 2.3 2 2 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Arg_tRNA_synt_N PF03485.11 gi|218883811|ref|YP_002428193.1| - 0.019 15.5 0.0 0.048 14.1 0.0 1.7 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain EamA PF00892.15 gi|218883812|ref|YP_002428194.1| - 7.5e-13 48.6 31.6 1.5e-07 31.4 7.9 2.5 1 1 0 2 2 2 2 EamA-like transporter family Git3_C PF11970.3 gi|218883812|ref|YP_002428194.1| - 0.62 9.8 5.0 1.5 8.6 0.2 3.1 3 0 0 3 3 3 0 G protein-coupled glucose receptor regulating Gpa2 C-term MoeA_N PF03453.12 gi|218883813|ref|YP_002428195.1| - 1.5e-46 157.6 0.8 2.5e-46 157.0 0.6 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|218883813|ref|YP_002428195.1| - 1.2e-23 83.1 0.0 2e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|218883813|ref|YP_002428195.1| - 3.5e-19 68.5 0.0 1.5e-18 66.4 0.0 2.2 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) ArsA_ATPase PF02374.10 gi|218883814|ref|YP_002428196.1| - 0.064 12.2 0.0 0.067 12.2 0.0 1.1 1 0 0 1 1 1 0 Anion-transporting ATPase DUF4161 PF13722.1 gi|218883815|ref|YP_002428197.1| - 0.0021 18.3 0.0 0.0024 18.1 0.0 1.0 1 0 0 1 1 1 1 C-terminal domain on CstA (DUF4161) DUF3165 PF11364.3 gi|218883816|ref|YP_002428198.1| - 0.026 14.6 0.0 0.031 14.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3165) Polysacc_synt PF01943.12 gi|218883817|ref|YP_002428199.1| - 1.8e-21 76.6 29.7 1.8e-21 76.6 20.6 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|218883817|ref|YP_002428199.1| - 5.1e-09 35.9 28.2 5.1e-09 35.9 19.5 3.3 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|218883817|ref|YP_002428199.1| - 0.0012 18.5 10.0 0.0012 18.5 6.9 4.9 2 1 2 5 5 5 2 MatE MVIN PF03023.9 gi|218883817|ref|YP_002428199.1| - 0.02 13.3 39.6 0.0021 16.5 18.4 2.9 1 1 1 3 3 3 0 MviN-like protein OrfB_Zn_ribbon PF07282.6 gi|218883818|ref|YP_002428200.1| - 0.00093 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CAP_N PF01213.14 gi|218883819|ref|YP_002428201.1| - 0.15 11.3 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal T2SF PF00482.18 gi|218883820|ref|YP_002428202.1| - 0.0001 22.2 2.2 0.0023 17.8 0.1 3.6 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Nitroreductase PF00881.19 gi|218883821|ref|YP_002428203.1| - 3.7e-25 88.6 0.0 4.5e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Phage_holin_2 PF04550.7 gi|218883822|ref|YP_002428204.1| - 0.012 15.6 1.8 0.029 14.4 0.4 1.9 2 0 0 2 2 2 0 Phage holin family 2 SpoVAB PF13782.1 gi|218883822|ref|YP_002428204.1| - 0.058 13.3 0.2 0.098 12.6 0.2 1.5 1 1 0 1 1 1 0 Stage V sporulation protein AB PMP22_Claudin PF00822.15 gi|218883823|ref|YP_002428205.1| - 0.088 12.4 1.8 0.1 12.2 1.3 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family Sen15 PF09631.5 gi|218883823|ref|YP_002428205.1| - 0.18 12.0 0.4 2.3 8.4 0.1 2.0 1 1 1 2 2 2 0 Sen15 protein DUF3624 PF12292.3 gi|218883823|ref|YP_002428205.1| - 0.21 11.9 7.5 1.1 9.7 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3624) Ceramidase PF05875.7 gi|218883823|ref|YP_002428205.1| - 0.51 9.4 4.0 0.59 9.2 2.8 1.0 1 0 0 1 1 1 0 Ceramidase Fumarate_red_C PF02300.12 gi|218883823|ref|YP_002428205.1| - 0.53 10.1 4.7 0.22 11.4 0.6 1.8 1 1 1 2 2 2 0 Fumarate reductase subunit C Fer4_15 PF13459.1 gi|218883825|ref|YP_002428207.1| - 3.2e-15 56.4 1.8 4e-15 56.1 1.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|218883825|ref|YP_002428207.1| - 1.7e-13 50.7 1.3 2.2e-13 50.3 0.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|218883825|ref|YP_002428207.1| - 0.00027 20.4 3.1 0.11 12.1 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218883825|ref|YP_002428207.1| - 0.0023 18.1 0.3 0.0035 17.5 0.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218883825|ref|YP_002428207.1| - 0.018 14.9 0.5 0.018 14.9 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218883825|ref|YP_002428207.1| - 0.031 14.6 1.9 0.4 11.0 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|218883825|ref|YP_002428207.1| - 0.036 13.9 3.6 0.33 10.8 2.5 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218883825|ref|YP_002428207.1| - 0.047 13.5 5.4 0.24 11.3 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218883825|ref|YP_002428207.1| - 0.098 12.4 2.0 0.28 11.0 1.4 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF2374 PF09574.5 gi|218883826|ref|YP_002428208.1| - 0.076 12.6 1.0 0.14 11.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (Duf2374) SBF PF01758.11 gi|218883826|ref|YP_002428208.1| - 0.1 11.9 0.5 0.12 11.7 0.3 1.1 1 0 0 1 1 1 0 Sodium Bile acid symporter family DUF1385 PF07136.6 gi|218883826|ref|YP_002428208.1| - 0.13 11.3 0.1 0.13 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) DAO PF01266.19 gi|218883828|ref|YP_002428210.1| - 2.5e-14 52.9 0.1 1.3e-06 27.6 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|218883828|ref|YP_002428210.1| - 4.3e-13 49.6 0.0 0.00013 21.8 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|218883828|ref|YP_002428210.1| - 3.6e-12 45.4 0.0 1.8e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|218883828|ref|YP_002428210.1| - 4.1e-08 32.4 0.4 0.0031 16.4 0.0 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|218883828|ref|YP_002428210.1| - 8.7e-07 28.1 0.0 4.9e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|218883828|ref|YP_002428210.1| - 1.4e-06 28.5 0.0 0.064 13.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|218883828|ref|YP_002428210.1| - 5.3e-06 26.3 0.1 2e-05 24.4 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|218883828|ref|YP_002428210.1| - 2.3e-05 23.4 0.0 4.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|218883828|ref|YP_002428210.1| - 3.9e-05 22.8 0.1 0.00036 19.7 0.0 2.2 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|218883828|ref|YP_002428210.1| - 0.00026 21.3 0.1 0.54 10.7 0.0 2.9 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|218883828|ref|YP_002428210.1| - 0.0003 19.9 0.0 0.00056 19.0 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|218883828|ref|YP_002428210.1| - 0.00035 20.3 0.0 0.04 13.6 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|218883828|ref|YP_002428210.1| - 0.0032 16.6 0.0 0.021 13.9 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|218883828|ref|YP_002428210.1| - 0.0046 15.6 0.0 0.0068 15.0 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Adenylsucc_synt PF00709.16 gi|218883829|ref|YP_002428211.1| - 1.4e-73 248.0 0.1 1.1e-36 126.4 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Dak1_2 PF13684.1 gi|218883829|ref|YP_002428211.1| - 0.083 11.8 0.0 0.49 9.2 0.0 1.9 2 0 0 2 2 2 0 Dihydroxyacetone kinase family SAICAR_synt PF01259.13 gi|218883830|ref|YP_002428212.1| - 3.4e-50 170.4 0.0 3.8e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.9 gi|218883831|ref|YP_002428213.1| - 2.4e-18 65.8 0.1 2.9e-18 65.6 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|218883832|ref|YP_002428214.1| - 3.7e-46 157.1 0.0 6.4e-46 156.3 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|218883832|ref|YP_002428214.1| - 1.1e-09 38.0 0.0 1.1e-09 38.0 0.0 1.2 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|218883832|ref|YP_002428214.1| - 6.3e-08 32.1 0.0 9.4e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|218883832|ref|YP_002428214.1| - 4.3e-07 29.6 0.0 2.4e-06 27.2 0.0 1.9 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|218883832|ref|YP_002428214.1| - 0.0007 18.8 0.0 0.001 18.3 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|218883832|ref|YP_002428214.1| - 0.0045 16.4 0.0 0.0065 15.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|218883832|ref|YP_002428214.1| - 0.0088 15.6 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 SNO glutamine amidotransferase family AIRS_C PF02769.17 gi|218883833|ref|YP_002428215.1| - 1.7e-42 144.9 0.2 7.9e-21 74.6 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|218883833|ref|YP_002428215.1| - 8.4e-39 131.7 0.1 2.3e-22 79.0 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain Tegument_dsDNA PF12818.2 gi|218883833|ref|YP_002428215.1| - 6.2e-05 22.0 0.0 0.12 11.2 0.0 2.2 2 0 0 2 2 2 2 dsDNA viral tegument protein GATase_6 PF13522.1 gi|218883834|ref|YP_002428216.1| - 6.6e-14 52.0 0.0 1.1e-13 51.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|218883834|ref|YP_002428216.1| - 1.2e-12 47.6 0.0 1.9e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|218883834|ref|YP_002428216.1| - 1.5e-11 44.1 0.1 2.9e-11 43.1 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_2 PF00310.16 gi|218883834|ref|YP_002428216.1| - 3.5e-08 32.5 0.1 0.012 14.3 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|218883834|ref|YP_002428216.1| - 0.043 12.4 0.0 0.11 11.1 0.0 1.7 2 1 0 2 2 2 0 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|218883835|ref|YP_002428217.1| - 2.1e-18 66.2 0.5 5.5e-18 64.8 0.3 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|218883835|ref|YP_002428217.1| - 0.00014 21.2 0.0 0.00027 20.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase GARS_A PF01071.14 gi|218883836|ref|YP_002428218.1| - 8.8e-38 129.8 0.0 1.3e-37 129.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|218883836|ref|YP_002428218.1| - 2.9e-23 82.2 0.0 5.3e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|218883836|ref|YP_002428218.1| - 1.5e-10 41.0 0.0 3.2e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|218883836|ref|YP_002428218.1| - 2.1e-07 30.8 0.0 5.9e-07 29.3 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|218883836|ref|YP_002428218.1| - 0.00076 18.3 0.0 0.0011 17.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|218883836|ref|YP_002428218.1| - 0.026 14.3 0.0 0.081 12.7 0.0 1.8 1 1 0 1 1 1 0 ATP-grasp domain GSH-S_ATP PF02955.11 gi|218883836|ref|YP_002428218.1| - 0.031 13.3 0.0 0.073 12.2 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.1 gi|218883836|ref|YP_002428218.1| - 0.038 13.0 0.0 0.055 12.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.12 gi|218883836|ref|YP_002428218.1| - 0.052 12.8 0.0 0.084 12.1 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TauD PF02668.11 gi|218883836|ref|YP_002428218.1| - 0.19 11.3 0.0 4 7.0 0.0 2.1 2 0 0 2 2 2 0 Taurine catabolism dioxygenase TauD, TfdA family ATP-grasp PF02222.17 gi|218883837|ref|YP_002428219.1| - 5.2e-38 130.0 0.0 8.1e-38 129.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|218883837|ref|YP_002428219.1| - 2.3e-22 79.6 0.1 6.1e-22 78.2 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|218883837|ref|YP_002428219.1| - 3.4e-09 36.3 0.0 6e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|218883837|ref|YP_002428219.1| - 5.1e-08 32.4 0.0 1.4e-07 30.9 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|218883837|ref|YP_002428219.1| - 6.1e-08 31.7 0.0 4.8e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.6 gi|218883837|ref|YP_002428219.1| - 7.5e-06 25.5 0.0 3.9e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.1 gi|218883837|ref|YP_002428219.1| - 0.00065 18.9 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|218883837|ref|YP_002428219.1| - 0.00094 18.7 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_chain PF00289.17 gi|218883837|ref|YP_002428219.1| - 0.0017 18.4 0.0 0.0069 16.4 0.0 2.1 2 0 0 2 2 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|218883837|ref|YP_002428219.1| - 0.0036 16.4 0.0 0.007 15.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_3 PF02655.9 gi|218883837|ref|YP_002428219.1| - 0.005 16.7 0.0 0.014 15.2 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain NAD_binding_10 PF13460.1 gi|218883837|ref|YP_002428219.1| - 0.007 16.3 0.0 0.02 14.8 0.0 1.8 2 0 0 2 2 2 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|218883837|ref|YP_002428219.1| - 0.016 14.1 0.0 0.029 13.2 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Epimerase PF01370.16 gi|218883837|ref|YP_002428219.1| - 0.036 13.4 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|218883837|ref|YP_002428219.1| - 0.064 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|218883837|ref|YP_002428219.1| - 0.091 13.1 0.2 0.67 10.3 0.1 2.4 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AIRC PF00731.15 gi|218883838|ref|YP_002428220.1| - 3.8e-47 159.3 0.2 4.5e-47 159.0 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase SCO1-SenC PF02630.9 gi|218883838|ref|YP_002428220.1| - 0.017 14.7 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 SCO1/SenC PrpR_N PF06506.6 gi|218883838|ref|YP_002428220.1| - 0.034 13.5 0.1 0.044 13.1 0.1 1.2 1 0 0 1 1 1 0 Propionate catabolism activator THF_DHG_CYH_C PF02882.14 gi|218883838|ref|YP_002428220.1| - 0.076 12.0 0.1 0.11 11.5 0.0 1.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ins_allergen_rp PF06757.8 gi|218883838|ref|YP_002428220.1| - 0.097 12.1 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification AIRS_C PF02769.17 gi|218883839|ref|YP_002428221.1| - 5.9e-20 71.8 0.0 8.7e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|218883839|ref|YP_002428221.1| - 3.7e-14 52.7 0.0 1.5e-13 50.7 0.0 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF1297 PF06973.7 gi|218883840|ref|YP_002428222.1| - 3.4e-75 251.4 0.2 4.6e-75 251.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|218883840|ref|YP_002428222.1| - 2.7e-44 149.9 0.0 6.5e-44 148.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|218883840|ref|YP_002428222.1| - 6.9e-07 29.1 0.0 2.1e-05 24.3 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain Lyase_1 PF00206.15 gi|218883841|ref|YP_002428223.1| - 2.1e-39 135.5 0.0 2.8e-39 135.1 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|218883841|ref|YP_002428223.1| - 1.1e-15 57.3 0.0 2.7e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ANTAR PF03861.9 gi|218883841|ref|YP_002428223.1| - 0.029 13.9 0.0 0.074 12.6 0.0 1.7 1 0 0 1 1 1 0 ANTAR domain DUF1297 PF06973.7 gi|218883842|ref|YP_002428224.1| - 5.6e-72 241.0 0.0 7.2e-72 240.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|218883842|ref|YP_002428224.1| - 1.6e-40 137.6 0.0 2.3e-40 137.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|218883842|ref|YP_002428224.1| - 3.9e-05 23.4 0.0 9.9e-05 22.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|218883842|ref|YP_002428224.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Pribosyltran PF00156.22 gi|218883843|ref|YP_002428225.1| - 2.9e-19 69.0 0.2 4.8e-19 68.3 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|218883843|ref|YP_002428225.1| - 0.00011 21.4 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|218883843|ref|YP_002428225.1| - 0.015 14.6 0.0 0.022 14.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase POR PF01558.13 gi|218883844|ref|YP_002428226.1| - 1.8e-27 96.3 0.0 2.1e-27 96.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|218883845|ref|YP_002428227.1| - 6.9e-31 106.8 0.7 2.3e-30 105.2 0.1 1.8 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|218883846|ref|YP_002428228.1| - 1.6e-67 227.4 0.2 2.1e-67 227.0 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|218883846|ref|YP_002428228.1| - 7.9e-12 45.1 0.0 1.9e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|218883846|ref|YP_002428228.1| - 0.0019 17.7 0.1 0.0035 16.8 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|218883847|ref|YP_002428229.1| - 7.5e-13 48.6 32.5 3.7e-08 33.6 7.9 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|218883847|ref|YP_002428229.1| - 2.3e-11 42.7 14.6 7.3e-06 25.3 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218883847|ref|YP_002428229.1| - 2.3e-10 40.1 5.3 4.6e-05 23.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218883847|ref|YP_002428229.1| - 3.2e-10 39.4 13.5 1e-05 25.1 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218883847|ref|YP_002428229.1| - 9.2e-10 38.6 6.8 0.00026 21.1 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218883847|ref|YP_002428229.1| - 8.8e-09 34.7 14.3 0.00032 20.4 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218883847|ref|YP_002428229.1| - 6.2e-08 32.3 23.2 1.5e-06 27.8 8.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|218883847|ref|YP_002428229.1| - 2.3e-07 30.7 21.3 4.4e-06 26.6 7.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218883847|ref|YP_002428229.1| - 5.8e-07 29.3 14.0 0.0018 18.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|218883847|ref|YP_002428229.1| - 7.5e-07 29.4 8.8 0.00013 22.2 7.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218883847|ref|YP_002428229.1| - 8.7e-07 29.5 7.8 0.00034 21.2 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|218883847|ref|YP_002428229.1| - 2.6e-05 24.4 15.2 0.018 15.5 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218883847|ref|YP_002428229.1| - 0.0019 18.5 14.5 0.083 13.3 3.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|218883847|ref|YP_002428229.1| - 0.0021 18.4 10.8 0.045 14.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|218883847|ref|YP_002428229.1| - 0.0022 18.5 10.6 0.053 14.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain TNFR_c6 PF00020.13 gi|218883847|ref|YP_002428229.1| - 7.2 6.7 8.3 13 5.9 0.4 2.3 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Lactamase_B_2 PF12706.2 gi|218883849|ref|YP_002428231.1| - 1.1e-30 106.6 0.0 1.3e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|218883849|ref|YP_002428231.1| - 3.4e-14 52.9 0.1 4.8e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|218883849|ref|YP_002428231.1| - 1.1e-10 40.8 0.0 1.9e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease Lactamase_B_3 PF13483.1 gi|218883849|ref|YP_002428231.1| - 0.0053 16.4 0.2 0.012 15.3 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Rhabdo_matrix PF03397.9 gi|218883849|ref|YP_002428231.1| - 0.083 12.2 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Rhabdovirus matrix protein UPF0020 PF01170.13 gi|218883850|ref|YP_002428232.1| - 3e-23 82.3 0.0 5.2e-23 81.5 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|218883850|ref|YP_002428232.1| - 2.8e-12 46.7 0.0 5.6e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|218883850|ref|YP_002428232.1| - 5.7e-07 29.2 0.0 0.00027 20.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.10 gi|218883850|ref|YP_002428232.1| - 3e-06 26.7 0.0 5.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|218883850|ref|YP_002428232.1| - 0.018 14.1 0.0 0.038 13.0 0.0 1.6 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_15 PF09445.5 gi|218883850|ref|YP_002428232.1| - 0.045 13.2 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Eco57I PF07669.6 gi|218883850|ref|YP_002428232.1| - 0.057 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Eco57I restriction-modification methylase MethyltransfD12 PF02086.10 gi|218883850|ref|YP_002428232.1| - 0.062 12.7 0.0 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Pribosyltran_N PF13793.1 gi|218883851|ref|YP_002428233.1| - 1.5e-23 82.7 0.0 5.4e-22 77.7 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|218883851|ref|YP_002428233.1| - 2.9e-12 46.3 3.1 4.1e-12 45.9 0.7 2.3 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|218883851|ref|YP_002428233.1| - 2.7e-11 43.5 0.6 5.6e-11 42.5 0.4 1.5 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|218883851|ref|YP_002428233.1| - 0.00039 19.6 0.0 0.0007 18.8 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase CBS PF00571.23 gi|218883851|ref|YP_002428233.1| - 0.0043 16.8 0.0 1.2 8.9 0.0 3.2 2 1 1 3 3 3 1 CBS domain PRTase_2 PF15609.1 gi|218883851|ref|YP_002428233.1| - 0.0081 15.4 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase Radical_SAM PF04055.16 gi|218883852|ref|YP_002428234.1| - 8.7e-19 68.2 0.0 5.2e-18 65.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|218883852|ref|YP_002428234.1| - 3.1e-05 24.1 0.0 6.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|218883852|ref|YP_002428234.1| - 0.00036 19.6 0.2 0.00036 19.6 0.2 2.4 2 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|218883852|ref|YP_002428234.1| - 0.002 17.5 0.5 0.002 17.5 0.4 2.4 2 1 0 2 2 1 1 zinc-ribbon domain DUF1610 PF07754.6 gi|218883852|ref|YP_002428234.1| - 0.0035 17.4 2.0 0.054 13.6 0.1 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) DNA_ligase_ZBD PF03119.11 gi|218883852|ref|YP_002428234.1| - 0.0067 16.1 0.3 0.17 11.6 0.0 2.7 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain VP_N-CPKC PF11475.3 gi|218883852|ref|YP_002428234.1| - 0.017 14.6 1.2 0.24 10.9 0.0 2.5 2 0 0 2 2 2 0 Virion protein N terminal domain OrfB_Zn_ribbon PF07282.6 gi|218883852|ref|YP_002428234.1| - 0.019 14.6 0.1 0.051 13.2 0.0 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|218883852|ref|YP_002428234.1| - 0.024 14.4 0.0 0.024 14.4 0.0 2.8 3 0 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|218883852|ref|YP_002428234.1| - 0.033 13.6 6.4 0.68 9.4 0.0 3.4 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Fer4_14 PF13394.1 gi|218883852|ref|YP_002428234.1| - 0.054 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Zn_Tnp_IS1595 PF12760.2 gi|218883852|ref|YP_002428234.1| - 0.08 12.7 11.9 0.089 12.6 0.1 3.9 4 0 0 4 4 4 0 Transposase zinc-ribbon domain ATP-synt_DE_N PF02823.11 gi|218883852|ref|YP_002428234.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TF_Zn_Ribbon PF08271.7 gi|218883852|ref|YP_002428234.1| - 0.11 11.8 6.4 0.22 10.8 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|218883852|ref|YP_002428234.1| - 0.43 10.6 0.0 0.43 10.6 0.0 3.3 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ATP_bind_1 PF03029.12 gi|218883853|ref|YP_002428235.1| - 5.1e-62 209.5 0.0 5.8e-62 209.3 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|218883853|ref|YP_002428235.1| - 1.9e-05 24.1 0.8 4.9e-05 22.8 0.2 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|218883853|ref|YP_002428235.1| - 0.00028 20.3 0.1 0.0047 16.3 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.1 gi|218883853|ref|YP_002428235.1| - 0.00031 20.7 0.0 0.00076 19.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.1 gi|218883853|ref|YP_002428235.1| - 0.00045 19.8 0.0 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|218883853|ref|YP_002428235.1| - 0.0011 19.8 0.0 0.003 18.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|218883853|ref|YP_002428235.1| - 0.0024 17.8 0.1 0.0064 16.4 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|218883853|ref|YP_002428235.1| - 0.0035 17.6 0.0 0.02 15.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain cobW PF02492.14 gi|218883853|ref|YP_002428235.1| - 0.0071 15.8 0.1 0.018 14.5 0.0 1.8 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|218883853|ref|YP_002428235.1| - 0.012 14.9 0.3 0.93 8.7 0.0 2.9 3 0 0 3 3 3 0 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|218883853|ref|YP_002428235.1| - 0.016 15.0 2.0 0.88 9.3 0.0 2.6 3 0 0 3 3 3 0 Dynamin family PduV-EutP PF10662.4 gi|218883853|ref|YP_002428235.1| - 0.018 14.5 0.1 0.87 9.0 0.0 3.0 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.17 gi|218883853|ref|YP_002428235.1| - 0.023 14.1 0.0 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|218883853|ref|YP_002428235.1| - 0.023 14.1 0.1 0.092 12.1 0.1 1.9 1 1 0 1 1 1 0 AAA-like domain Gtr1_RagA PF04670.7 gi|218883853|ref|YP_002428235.1| - 0.027 13.6 0.2 0.13 11.3 0.1 2.1 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region T2SE PF00437.15 gi|218883853|ref|YP_002428235.1| - 0.027 13.3 0.0 0.1 11.4 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.7 gi|218883853|ref|YP_002428235.1| - 0.031 13.9 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|218883853|ref|YP_002428235.1| - 0.034 13.8 0.0 0.086 12.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|218883853|ref|YP_002428235.1| - 0.036 13.3 0.0 0.13 11.4 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein KTI12 PF08433.5 gi|218883853|ref|YP_002428235.1| - 0.037 13.2 0.0 0.089 11.9 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ArsA_ATPase PF02374.10 gi|218883853|ref|YP_002428235.1| - 0.038 13.0 0.1 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_29 PF13555.1 gi|218883853|ref|YP_002428235.1| - 0.044 13.3 0.1 0.16 11.5 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|218883853|ref|YP_002428235.1| - 0.045 13.6 0.0 0.1 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|218883853|ref|YP_002428235.1| - 0.054 13.3 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_28 PF13521.1 gi|218883853|ref|YP_002428235.1| - 0.067 13.1 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|218883853|ref|YP_002428235.1| - 0.078 12.1 0.0 0.25 10.5 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Miro PF08477.8 gi|218883853|ref|YP_002428235.1| - 0.082 13.4 0.0 0.28 11.6 0.0 1.9 2 0 0 2 2 1 0 Miro-like protein AAA_22 PF13401.1 gi|218883853|ref|YP_002428235.1| - 0.094 12.8 0.1 0.36 10.9 0.1 2.0 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|218883853|ref|YP_002428235.1| - 0.095 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|218883853|ref|YP_002428235.1| - 0.11 11.3 0.0 0.32 9.7 0.0 1.8 2 0 0 2 2 2 0 ArgK protein DUF2075 PF09848.4 gi|218883853|ref|YP_002428235.1| - 0.19 10.6 0.0 0.3 10.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) HAD_2 PF13419.1 gi|218883854|ref|YP_002428236.1| - 4.6e-08 33.4 0.0 1e-06 29.1 0.0 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|218883854|ref|YP_002428236.1| - 7.6e-07 29.4 0.0 1.2e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|218883854|ref|YP_002428236.1| - 1.5e-06 28.0 1.6 8.1e-05 22.3 0.4 2.2 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.7 gi|218883854|ref|YP_002428236.1| - 2.9e-05 23.7 1.3 0.00041 20.0 0.3 2.4 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Trp_syntA PF00290.15 gi|218883854|ref|YP_002428236.1| - 0.0092 14.5 0.0 0.011 14.3 0.0 1.2 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Lactamase_B_2 PF12706.2 gi|218883854|ref|YP_002428236.1| - 0.015 14.8 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Hydrolase PF00702.21 gi|218883854|ref|YP_002428236.1| - 0.058 13.8 0.0 8.4 6.7 0.0 2.2 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Rad10 PF03834.9 gi|218883854|ref|YP_002428236.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Kdo PF06293.9 gi|218883854|ref|YP_002428236.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Acid_phosphat_B PF03767.9 gi|218883854|ref|YP_002428236.1| - 0.14 11.4 0.1 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Asparaginase_2 PF01112.13 gi|218883855|ref|YP_002428237.1| - 8.4e-62 208.7 0.0 1.2e-61 208.2 0.0 1.1 1 0 0 1 1 1 1 Asparaginase DUF4234 PF14018.1 gi|218883856|ref|YP_002428238.1| - 0.0052 16.4 4.6 0.0052 16.4 3.2 4.3 3 3 1 4 4 4 2 Domain of unknown function (DUF4234) ROK PF00480.15 gi|218883857|ref|YP_002428239.1| - 2e-37 128.7 0.1 4.7e-37 127.5 0.0 1.6 2 0 0 2 2 2 1 ROK family Glucokinase PF02685.11 gi|218883857|ref|YP_002428239.1| - 0.00012 21.0 0.0 0.24 10.1 0.0 2.1 2 0 0 2 2 2 2 Glucokinase tRNA-synt_1g PF09334.6 gi|218883858|ref|YP_002428240.1| - 4.5e-108 361.3 4.2 1.4e-106 356.4 2.9 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|218883858|ref|YP_002428240.1| - 1.7e-29 102.3 2.7 5.6e-14 51.0 0.4 3.9 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|218883858|ref|YP_002428240.1| - 7.9e-09 35.0 0.2 0.00093 18.4 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|218883858|ref|YP_002428240.1| - 1.9e-08 34.1 0.0 4.6e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|218883858|ref|YP_002428240.1| - 5e-05 22.1 0.3 0.0018 17.0 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|218883858|ref|YP_002428240.1| - 0.029 13.1 0.0 0.46 9.2 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (R) Tctex-1 PF03645.8 gi|218883858|ref|YP_002428240.1| - 0.038 13.8 0.0 1.9 8.3 0.0 2.5 2 0 0 2 2 2 0 Tctex-1 family LIM PF00412.17 gi|218883858|ref|YP_002428240.1| - 0.05 13.6 0.3 0.11 12.5 0.2 1.5 1 0 0 1 1 1 0 LIM domain Radical_SAM PF04055.16 gi|218883859|ref|YP_002428241.1| - 9.9e-18 64.8 0.1 7.6e-17 61.9 0.0 2.4 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|218883859|ref|YP_002428241.1| - 0.0004 20.2 0.1 0.024 14.5 0.0 2.4 2 0 0 2 2 2 1 B12 binding domain MarR_2 PF12802.2 gi|218883861|ref|YP_002428243.1| - 3.4e-08 33.0 0.5 1.1e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|218883861|ref|YP_002428243.1| - 2.9e-07 29.9 0.3 7.3e-07 28.6 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|218883861|ref|YP_002428243.1| - 3e-07 30.0 0.8 7.6e-07 28.7 0.2 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|218883861|ref|YP_002428243.1| - 2.8e-06 26.6 2.7 3e-06 26.5 0.3 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|218883861|ref|YP_002428243.1| - 1e-05 25.2 2.0 7.1e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|218883861|ref|YP_002428243.1| - 1.2e-05 24.8 0.4 0.00053 19.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|218883861|ref|YP_002428243.1| - 0.00011 22.1 0.4 0.00022 21.1 0.3 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|218883861|ref|YP_002428243.1| - 0.00014 22.0 0.2 0.00036 20.7 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain tRNA-synt_His PF13393.1 gi|218883861|ref|YP_002428243.1| - 0.0042 16.1 0.4 0.0046 16.0 0.3 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HTH_Crp_2 PF13545.1 gi|218883861|ref|YP_002428243.1| - 0.0054 16.5 0.1 0.01 15.5 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Mga PF08280.6 gi|218883861|ref|YP_002428243.1| - 0.008 15.9 0.2 0.016 14.9 0.1 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain YscJ_FliF PF01514.12 gi|218883861|ref|YP_002428243.1| - 0.0081 15.3 0.1 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family DUF977 PF06163.6 gi|218883861|ref|YP_002428243.1| - 0.011 15.4 0.5 1.6 8.4 0.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF977) Rrf2 PF02082.15 gi|218883861|ref|YP_002428243.1| - 0.051 13.7 0.5 0.3 11.2 0.1 2.1 1 1 1 2 2 2 0 Transcriptional regulator Cdc6_C PF09079.6 gi|218883861|ref|YP_002428243.1| - 0.059 13.0 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 CDC6, C terminal HTH_11 PF08279.7 gi|218883861|ref|YP_002428243.1| - 0.098 12.3 0.4 0.22 11.2 0.3 1.6 1 0 0 1 1 1 0 HTH domain COOH-NH2_lig PF14395.1 gi|218883861|ref|YP_002428243.1| - 0.11 11.6 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Phage phiEco32-like COOH.NH2 ligase-type 2 EAP30 PF04157.11 gi|218883861|ref|YP_002428243.1| - 0.11 11.6 0.2 0.24 10.5 0.0 1.6 2 0 0 2 2 2 0 EAP30/Vps36 family DUF1732 PF08340.6 gi|218883861|ref|YP_002428243.1| - 0.11 12.3 0.8 0.21 11.4 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1732) Vac_Fusion PF02346.11 gi|218883861|ref|YP_002428243.1| - 0.11 11.9 0.1 0.26 10.7 0.0 1.7 1 0 0 1 1 1 0 Chordopoxvirus fusion protein HTH_28 PF13518.1 gi|218883861|ref|YP_002428243.1| - 0.13 12.3 0.1 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|218883861|ref|YP_002428243.1| - 0.16 12.1 1.3 0.41 10.8 0.1 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain DGC PF08859.6 gi|218883863|ref|YP_002428245.1| - 5.8e-26 90.5 1.2 7.1e-26 90.2 0.9 1.1 1 0 0 1 1 1 1 DGC domain BAAT_C PF08840.6 gi|218883863|ref|YP_002428245.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF4579 PF15158.1 gi|218883863|ref|YP_002428245.1| - 0.075 12.5 0.0 0.25 10.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) DUF3897 PF13036.1 gi|218883863|ref|YP_002428245.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3897) Nitro_FeMo-Co PF02579.12 gi|218883864|ref|YP_002428246.1| - 2.8e-20 72.1 0.0 4.5e-20 71.5 0.0 1.4 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Resolvase PF00239.16 gi|218883867|ref|YP_002428249.1| - 1.6e-20 73.4 0.4 3.1e-20 72.4 0.2 1.5 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218883867|ref|YP_002428249.1| - 2.2e-13 50.1 0.3 4.7e-13 49.1 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218883867|ref|YP_002428249.1| - 8.2e-07 28.4 1.3 1.4e-06 27.7 0.3 1.9 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.1 gi|218883867|ref|YP_002428249.1| - 7.7e-06 25.5 0.1 1.8e-05 24.4 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|218883867|ref|YP_002428249.1| - 1.8e-05 24.1 0.1 4.3e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|218883867|ref|YP_002428249.1| - 0.0002 21.2 0.5 0.00058 19.7 0.0 2.0 2 0 0 2 2 2 1 Transposase HTH_28 PF13518.1 gi|218883867|ref|YP_002428249.1| - 0.00022 21.1 0.2 0.00074 19.4 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|218883867|ref|YP_002428249.1| - 0.00077 19.6 1.0 0.025 14.7 0.2 2.5 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|218883867|ref|YP_002428249.1| - 0.001 18.8 0.0 0.0035 17.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix Exc PF07825.6 gi|218883867|ref|YP_002428249.1| - 0.001 18.7 0.3 0.0018 18.0 0.2 1.3 1 0 0 1 1 1 1 Excisionase-like protein HTH_29 PF13551.1 gi|218883867|ref|YP_002428249.1| - 0.0015 18.6 0.3 0.006 16.7 0.1 2.0 1 1 1 2 2 2 1 Winged helix-turn helix HTH_26 PF13443.1 gi|218883867|ref|YP_002428249.1| - 0.0084 16.2 0.0 0.024 14.8 0.0 1.9 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Phage_AlpA PF05930.7 gi|218883867|ref|YP_002428249.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) DUF1323 PF07037.6 gi|218883867|ref|YP_002428249.1| - 0.019 15.1 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_Tnp_ISL3 PF13542.1 gi|218883867|ref|YP_002428249.1| - 0.043 12.9 0.1 0.33 10.1 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 B12-binding PF02310.14 gi|218883867|ref|YP_002428249.1| - 0.071 12.9 0.0 1.7 8.5 0.0 2.2 1 1 1 2 2 2 0 B12 binding domain Phage_CI_repr PF07022.8 gi|218883867|ref|YP_002428249.1| - 0.072 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain MerR_2 PF13591.1 gi|218883867|ref|YP_002428249.1| - 0.076 12.6 0.0 0.23 11.0 0.0 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein CENP-B_N PF04218.8 gi|218883867|ref|YP_002428249.1| - 0.13 11.6 0.5 1.3 8.4 0.0 2.5 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain OrfB_IS605 PF01385.14 gi|218883868|ref|YP_002428250.1| - 0.046 13.1 0.3 0.091 12.1 0.2 1.5 1 1 0 1 1 1 0 Probable transposase Sigma70_r1_1 PF03979.9 gi|218883871|ref|YP_002428253.1| - 0.0079 16.1 0.9 3 7.8 0.1 2.8 3 1 0 3 3 3 2 Sigma-70 factor, region 1.1 Choline_kinase PF01633.15 gi|218883871|ref|YP_002428253.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Choline/ethanolamine kinase DUF499 PF04465.7 gi|218883872|ref|YP_002428254.1| - 3.1e-15 54.9 8.5 1.3e-13 49.5 1.2 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF499) Methyltransf_26 PF13659.1 gi|218883873|ref|YP_002428255.1| - 1.4e-12 47.6 0.0 2.5e-06 27.4 0.0 3.3 3 1 0 3 3 3 2 Methyltransferase domain DUF1156 PF06634.7 gi|218883873|ref|YP_002428255.1| - 1.5e-07 31.0 0.1 4.7e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) UPF0020 PF01170.13 gi|218883873|ref|YP_002428255.1| - 0.00033 20.2 0.0 0.51 9.8 0.0 2.7 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|218883873|ref|YP_002428255.1| - 0.0047 16.4 0.0 1.8 7.9 0.0 2.3 2 0 0 2 2 2 2 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|218883873|ref|YP_002428255.1| - 0.014 14.8 0.0 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 PyrI_C PF02748.10 gi|218883873|ref|YP_002428255.1| - 0.03 13.7 0.9 0.99 8.8 0.0 2.5 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zinc_ribbon_2 PF13240.1 gi|218883873|ref|YP_002428255.1| - 0.059 12.8 0.5 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Glyco_trans_4_4 PF13579.1 gi|218883873|ref|YP_002428255.1| - 0.074 13.1 1.1 0.25 11.4 0.2 2.5 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain DNA_ligase_ZBD PF03119.11 gi|218883873|ref|YP_002428255.1| - 4 7.2 5.1 12 5.7 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain MadM PF03818.8 gi|218883877|ref|YP_002428259.1| - 1.4 8.5 7.3 5.6 6.6 0.8 3.1 2 1 0 2 2 2 0 Malonate/sodium symporter MadM subunit GIY-YIG PF01541.19 gi|218883878|ref|YP_002428260.1| - 0.0014 18.9 0.0 0.0021 18.3 0.0 1.6 1 1 0 1 1 1 1 GIY-YIG catalytic domain DUF3487 PF11990.3 gi|218883879|ref|YP_002428261.1| - 0.058 12.7 10.5 0.042 13.2 2.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) DUF2299 PF10061.4 gi|218883880|ref|YP_002428262.1| - 2.7e-18 65.7 0.0 3e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) SNARE_assoc PF09335.6 gi|218883881|ref|YP_002428263.1| - 5.7e-11 42.6 7.8 5.7e-11 42.6 5.4 2.3 1 1 1 2 2 2 1 SNARE associated Golgi protein FixP_N PF14715.1 gi|218883881|ref|YP_002428263.1| - 0.3 10.5 1.9 0.96 8.8 1.3 1.8 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP MS_channel PF00924.13 gi|218883882|ref|YP_002428264.1| - 1.1e-16 60.8 4.6 1.1e-16 60.8 3.2 2.8 2 1 1 3 3 3 1 Mechanosensitive ion channel PT-VENN PF04829.8 gi|218883882|ref|YP_002428264.1| - 1.1 8.8 5.3 2.5 7.7 3.7 1.5 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif MFS_1 PF07690.11 gi|218883883|ref|YP_002428265.1| - 0.0026 16.5 9.3 0.0026 16.5 6.4 3.4 1 1 2 3 3 3 2 Major Facilitator Superfamily OrfB_Zn_ribbon PF07282.6 gi|218883884|ref|YP_002428266.1| - 0.0028 17.2 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain AIRS PF00586.19 gi|218883885|ref|YP_002428267.1| - 5.5e-11 42.5 0.0 1.2e-10 41.4 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|218883885|ref|YP_002428267.1| - 1.2e-06 28.5 0.0 2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain DSPc PF00782.15 gi|218883886|ref|YP_002428268.1| - 2.2e-09 36.9 0.0 4.3e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|218883886|ref|YP_002428268.1| - 0.0012 18.1 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.7 gi|218883886|ref|YP_002428268.1| - 0.013 14.9 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.1 gi|218883886|ref|YP_002428268.1| - 0.098 12.8 0.1 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Tyrosine phosphatase family Aldolase PF01081.14 gi|218883886|ref|YP_002428268.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 KDPG and KHG aldolase HycI PF01750.13 gi|218883888|ref|YP_002428270.1| - 2e-13 50.0 0.2 2.7e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease TPP_enzyme_C PF02775.16 gi|218883889|ref|YP_002428271.1| - 2.4e-24 85.6 0.3 3.3e-24 85.1 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|218883890|ref|YP_002428272.1| - 4.8e-74 248.7 0.2 6.4e-74 248.3 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|218883890|ref|YP_002428272.1| - 9.1e-05 22.3 0.0 0.00018 21.4 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|218883891|ref|YP_002428273.1| - 9.5e-14 50.3 13.6 7.9e-08 31.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218883891|ref|YP_002428273.1| - 7e-10 38.6 9.9 9.1e-10 38.2 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|218883891|ref|YP_002428273.1| - 2.3e-09 36.9 8.9 3.3e-09 36.4 6.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218883891|ref|YP_002428273.1| - 8.4e-09 34.9 13.5 1.4e-05 24.7 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218883891|ref|YP_002428273.1| - 1e-08 35.4 8.9 1.6e-08 34.8 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218883891|ref|YP_002428273.1| - 8.2e-08 32.8 8.4 8.7e-05 23.1 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|218883891|ref|YP_002428273.1| - 2e-07 30.5 10.7 0.00074 19.2 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218883891|ref|YP_002428273.1| - 6.2e-07 29.5 20.7 3.8e-06 27.0 7.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218883891|ref|YP_002428273.1| - 0.00017 22.0 11.4 0.078 13.5 0.8 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|218883891|ref|YP_002428273.1| - 0.00027 21.2 12.4 0.003 17.8 1.3 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|218883891|ref|YP_002428273.1| - 0.0019 18.3 10.6 0.14 12.5 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|218883891|ref|YP_002428273.1| - 0.0028 17.6 11.6 0.13 12.2 2.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|218883891|ref|YP_002428273.1| - 0.016 15.5 10.3 0.22 11.8 1.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|218883891|ref|YP_002428273.1| - 0.088 12.7 5.5 0.13 12.1 3.8 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|218883891|ref|YP_002428273.1| - 0.2 12.1 13.1 0.79 10.1 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218883891|ref|YP_002428273.1| - 0.91 10.2 15.1 0.22 12.1 4.7 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|218883892|ref|YP_002428274.1| - 2.5e-33 115.4 0.1 3e-33 115.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase SNF PF00209.13 gi|218883894|ref|YP_002428276.1| - 2.5e-51 174.7 37.9 5.8e-28 97.6 13.3 2.2 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family SDF PF00375.13 gi|218883895|ref|YP_002428277.1| - 4.5e-97 325.2 46.1 5.2e-97 325.0 32.0 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family FtsX PF02687.16 gi|218883895|ref|YP_002428277.1| - 0.0034 17.1 2.6 0.0034 17.1 1.8 4.2 2 1 2 4 4 4 2 FtsX-like permease family UPF0113 PF03657.8 gi|218883896|ref|YP_002428278.1| - 1e-09 38.2 0.2 1.7e-09 37.5 0.1 1.4 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu PF01189.12 gi|218883897|ref|YP_002428279.1| - 1.2e-42 146.2 0.0 1.5e-42 145.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|218883897|ref|YP_002428279.1| - 0.064 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|218883897|ref|YP_002428279.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF72 PF01904.13 gi|218883898|ref|YP_002428280.1| - 9.3e-49 166.2 0.1 1e-48 166.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PHO4 PF01384.15 gi|218883899|ref|YP_002428281.1| - 7.5e-61 205.5 35.7 2.1e-60 204.1 24.7 1.6 1 1 0 1 1 1 1 Phosphate transporter family DUF2244 PF10003.4 gi|218883899|ref|YP_002428281.1| - 5.9 6.2 9.8 0.19 11.0 0.9 2.9 1 1 1 3 3 3 0 Integral membrane protein (DUF2244) Peptidase_M42 PF05343.9 gi|218883900|ref|YP_002428282.1| - 1.4e-105 352.3 0.2 1.6e-105 352.0 0.2 1.1 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|218883900|ref|YP_002428282.1| - 2.4e-13 49.9 0.1 5e-13 48.9 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|218883900|ref|YP_002428282.1| - 0.00048 19.9 0.1 0.0013 18.4 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|218883900|ref|YP_002428282.1| - 0.0015 17.1 0.0 0.012 14.0 0.0 2.0 1 1 1 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) SPASM PF13186.1 gi|218883902|ref|YP_002428284.1| - 1.7e-11 44.3 0.4 4e-11 43.0 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.16 gi|218883902|ref|YP_002428284.1| - 1e-09 38.7 0.1 3.8e-08 33.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|218883902|ref|YP_002428284.1| - 0.099 12.7 2.2 0.2 11.7 0.0 2.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain ThiS PF02597.15 gi|218883903|ref|YP_002428285.1| - 1.2e-12 48.0 0.1 1.5e-12 47.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|218883903|ref|YP_002428285.1| - 0.061 13.1 0.0 0.079 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I GTPase_Cys_C PF12631.2 gi|218883903|ref|YP_002428285.1| - 0.096 13.1 0.2 0.56 10.6 0.0 1.9 2 0 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE PBS_linker_poly PF00427.16 gi|218883903|ref|YP_002428285.1| - 0.13 11.8 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Phycobilisome Linker polypeptide AFOR_C PF01314.13 gi|218883904|ref|YP_002428286.1| - 8.3e-155 515.1 0.0 1.2e-154 514.6 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|218883904|ref|YP_002428286.1| - 4.8e-80 267.6 0.6 1.7e-79 265.8 0.1 2.1 3 0 0 3 3 3 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AAA_3 PF07726.6 gi|218883905|ref|YP_002428287.1| - 4.4e-63 210.7 0.2 1.1e-62 209.4 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|218883905|ref|YP_002428287.1| - 1e-16 60.8 0.0 4.2e-16 58.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|218883905|ref|YP_002428287.1| - 9.5e-08 31.1 0.0 0.00011 21.1 0.0 2.3 2 1 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|218883905|ref|YP_002428287.1| - 3.1e-06 27.4 0.0 8.7e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|218883905|ref|YP_002428287.1| - 4e-05 23.1 0.0 9.9e-05 21.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|218883905|ref|YP_002428287.1| - 7.6e-05 21.9 0.9 0.26 10.4 0.0 2.7 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|218883905|ref|YP_002428287.1| - 0.00071 18.6 1.4 0.008 15.2 0.2 2.7 1 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Fimbrial_PilY2 PF14481.1 gi|218883905|ref|YP_002428287.1| - 0.0089 15.4 0.0 4.3 6.7 0.0 2.6 2 1 0 2 2 2 2 Type 4 fimbrial biogenesis protein PilY2 Mg_chelatase_2 PF13335.1 gi|218883905|ref|YP_002428287.1| - 0.019 15.3 0.0 0.093 13.1 0.0 2.1 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|218883905|ref|YP_002428287.1| - 0.024 14.5 0.2 0.97 9.3 0.0 2.7 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) Njmu-R1 PF15053.1 gi|218883905|ref|YP_002428287.1| - 0.039 12.6 0.0 0.24 10.0 0.0 1.9 2 0 0 2 2 2 0 Mjmu-R1-like protein family AAA_17 PF13207.1 gi|218883905|ref|YP_002428287.1| - 0.095 13.5 0.0 0.2 12.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF4129 PF13559.1 gi|218883906|ref|YP_002428288.1| - 2.2e-08 33.9 1.3 3.3e-08 33.3 0.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF4393 PF14337.1 gi|218883906|ref|YP_002428288.1| - 0.021 14.2 0.8 0.046 13.1 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) DUF2540 PF10802.3 gi|218883906|ref|YP_002428288.1| - 0.047 13.3 0.8 0.047 13.3 0.6 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2540) HD_4 PF13328.1 gi|218883906|ref|YP_002428288.1| - 0.12 12.1 0.1 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 HD domain PIRT PF15099.1 gi|218883908|ref|YP_002428290.1| - 0.056 12.6 0.9 0.067 12.4 0.6 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF3623 PF12291.3 gi|218883908|ref|YP_002428290.1| - 0.12 11.3 1.1 0.14 11.0 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3623) IncA PF04156.9 gi|218883908|ref|YP_002428290.1| - 0.34 10.4 3.7 0.37 10.3 2.6 1.1 1 0 0 1 1 1 0 IncA protein SdpI PF13630.1 gi|218883908|ref|YP_002428290.1| - 3 7.6 7.9 4.4 7.0 5.5 1.4 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF2892 PF11127.3 gi|218883908|ref|YP_002428290.1| - 4.3 7.2 6.2 5.6 6.8 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF58 PF01882.13 gi|218883910|ref|YP_002428292.1| - 1.9e-14 53.5 0.0 2.9e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF58 Linocin_M18 PF04454.7 gi|218883911|ref|YP_002428293.1| - 5.9e-52 176.1 0.2 9.1e-52 175.4 0.1 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|218883911|ref|YP_002428293.1| - 5.7e-10 39.6 0.1 1e-09 38.8 0.1 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|218883911|ref|YP_002428293.1| - 0.0068 16.6 0.1 0.014 15.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Phage_capsid PF05065.8 gi|218883911|ref|YP_002428293.1| - 0.007 15.5 0.3 0.027 13.6 0.1 2.0 2 1 0 2 2 2 1 Phage capsid family Ferritin PF00210.19 gi|218883911|ref|YP_002428293.1| - 0.071 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain Rubrerythrin PF02915.12 gi|218883912|ref|YP_002428294.1| - 5.8e-07 29.9 2.5 1.2e-06 28.8 1.7 1.6 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|218883912|ref|YP_002428294.1| - 0.004 16.9 3.1 0.006 16.3 2.1 1.3 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.9 gi|218883912|ref|YP_002428294.1| - 0.022 13.5 0.3 3.3 6.3 0.1 2.1 1 1 1 2 2 2 0 Fatty acid desaturase AAR2 PF05282.6 gi|218883912|ref|YP_002428294.1| - 0.03 13.2 0.4 0.043 12.7 0.3 1.1 1 0 0 1 1 1 0 AAR2 protein RNA_binding PF01877.12 gi|218883912|ref|YP_002428294.1| - 0.05 13.6 1.0 0.084 12.8 0.7 1.4 1 1 0 1 1 1 0 RNA binding PTS_IIA PF02255.11 gi|218883912|ref|YP_002428294.1| - 0.086 12.7 1.3 0.17 11.7 0.9 1.4 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIA subunit COQ7 PF03232.8 gi|218883912|ref|YP_002428294.1| - 0.088 12.2 1.3 0.11 11.9 0.9 1.4 1 1 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF1382 PF07131.6 gi|218883912|ref|YP_002428294.1| - 0.19 11.8 0.6 17 5.6 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1382) FCH PF00611.18 gi|218883912|ref|YP_002428294.1| - 0.46 10.7 2.4 1.5 9.0 0.5 2.6 2 1 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain FliT PF05400.8 gi|218883912|ref|YP_002428294.1| - 0.68 10.3 4.1 1.8 8.9 0.0 2.7 2 1 1 3 3 3 0 Flagellar protein FliT Lactamase_B PF00753.22 gi|218883913|ref|YP_002428295.1| - 1.4e-14 54.1 0.1 2.1e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peripla_BP_6 PF13458.1 gi|218883913|ref|YP_002428295.1| - 0.002 17.5 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein Flavodoxin_1 PF00258.20 gi|218883913|ref|YP_002428295.1| - 0.0034 17.3 0.0 0.0079 16.2 0.0 1.6 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|218883913|ref|YP_002428295.1| - 0.0042 16.5 0.0 0.025 14.0 0.0 1.9 2 0 0 2 2 2 1 NADPH-dependent FMN reductase AhpC-TSA PF00578.16 gi|218883914|ref|YP_002428296.1| - 3.5e-33 113.9 0.0 4.7e-33 113.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|218883914|ref|YP_002428296.1| - 6e-16 58.2 0.0 8.6e-16 57.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|218883914|ref|YP_002428296.1| - 3e-11 42.7 0.0 6.5e-11 41.6 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Sel1 PF08238.7 gi|218883914|ref|YP_002428296.1| - 0.0039 17.7 0.3 0.0099 16.4 0.2 1.8 1 0 0 1 1 1 1 Sel1 repeat zf-ribbon_3 PF13248.1 gi|218883915|ref|YP_002428297.1| - 0.0026 16.9 0.9 0.45 9.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-RING_3 PF14369.1 gi|218883915|ref|YP_002428297.1| - 0.0091 15.9 0.4 0.065 13.2 0.0 2.0 2 0 0 2 2 2 1 zinc-finger CpXC PF14353.1 gi|218883915|ref|YP_002428297.1| - 0.031 14.2 0.6 0.33 10.9 0.4 2.1 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|218883915|ref|YP_002428297.1| - 0.043 13.4 0.2 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|218883915|ref|YP_002428297.1| - 0.056 12.5 2.6 2.1 7.4 0.1 2.4 3 0 0 3 3 3 0 Mu-like prophage protein Com Lar_restr_allev PF14354.1 gi|218883915|ref|YP_002428297.1| - 0.067 13.5 1.2 0.44 10.9 0.8 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|218883915|ref|YP_002428297.1| - 0.09 12.6 0.1 0.18 11.6 0.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon SoxD PF04267.7 gi|218883915|ref|YP_002428297.1| - 0.091 12.6 0.3 0.18 11.6 0.0 1.6 2 0 0 2 2 2 0 Sarcosine oxidase, delta subunit family zinc_ribbon_4 PF13717.1 gi|218883915|ref|YP_002428297.1| - 0.11 12.2 0.4 3.5 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.7 gi|218883915|ref|YP_002428297.1| - 0.13 12.3 0.3 16 5.6 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C4_Topoisom PF01396.14 gi|218883915|ref|YP_002428297.1| - 0.26 10.8 2.7 5 6.7 0.1 2.8 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1 PF03811.8 gi|218883915|ref|YP_002428297.1| - 0.36 10.3 3.5 14 5.2 0.1 2.6 3 0 0 3 3 3 0 InsA N-terminal domain UPF0547 PF10571.4 gi|218883915|ref|YP_002428297.1| - 0.87 9.3 4.1 12 5.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HD PF01966.17 gi|218883916|ref|YP_002428298.1| - 5.5e-07 29.6 0.5 2.2e-06 27.7 0.4 2.1 1 1 0 1 1 1 1 HD domain Glycos_transf_2 PF00535.21 gi|218883917|ref|YP_002428299.1| - 1.1e-29 103.3 0.0 2.4e-29 102.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|218883917|ref|YP_002428299.1| - 2.4e-12 47.1 0.0 3.4e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|218883917|ref|YP_002428299.1| - 1.5e-05 24.2 0.0 2e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|218883917|ref|YP_002428299.1| - 0.083 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 UPF0542 PF15086.1 gi|218883917|ref|YP_002428299.1| - 0.42 10.3 1.5 0.88 9.3 1.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 tRNA-synt_1 PF00133.17 gi|218883918|ref|YP_002428300.1| - 5e-180 599.4 0.1 6.3e-180 599.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|218883918|ref|YP_002428300.1| - 2.6e-39 134.4 0.1 5.7e-39 133.3 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|218883918|ref|YP_002428300.1| - 6.8e-22 77.6 0.2 6.2e-07 28.4 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|218883918|ref|YP_002428300.1| - 3.1e-08 33.1 0.3 1.8e-07 30.6 0.0 2.3 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 dCMP_cyt_deam_1 PF00383.17 gi|218883919|ref|YP_002428301.1| - 8.6e-18 63.8 0.2 1.1e-17 63.5 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|218883919|ref|YP_002428301.1| - 2.7e-10 40.3 0.3 4e-10 39.7 0.2 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|218883919|ref|YP_002428301.1| - 4.1e-06 26.3 1.8 0.0014 18.0 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases YwqJ-deaminase PF14431.1 gi|218883919|ref|YP_002428301.1| - 0.032 14.0 1.7 6.7 6.5 0.3 2.8 1 1 1 2 2 2 0 YwqJ-like deaminase Methyltransf_23 PF13489.1 gi|218883920|ref|YP_002428302.1| - 1.3e-13 51.0 0.0 1.6e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|218883920|ref|YP_002428302.1| - 5.4e-12 46.0 0.0 7.6e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|218883920|ref|YP_002428302.1| - 1.4e-06 28.6 0.0 1.2e-05 25.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|218883920|ref|YP_002428302.1| - 2.8e-05 24.1 0.0 4.9e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218883920|ref|YP_002428302.1| - 5.6e-05 23.6 0.0 0.00078 19.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|218883920|ref|YP_002428302.1| - 0.00038 20.7 0.0 0.00071 19.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218883920|ref|YP_002428302.1| - 0.0021 17.6 0.0 0.03 13.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain NNMT_PNMT_TEMT PF01234.12 gi|218883920|ref|YP_002428302.1| - 0.034 13.1 0.0 3.2 6.6 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_9 PF08003.6 gi|218883920|ref|YP_002428302.1| - 0.081 11.6 0.2 0.45 9.1 0.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.9 gi|218883920|ref|YP_002428302.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain AAA_23 PF13476.1 gi|218883921|ref|YP_002428303.1| - 7.5e-13 49.2 98.5 1.6e+03 -0.9 68.3 5.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|218883921|ref|YP_002428303.1| - 2.2e-12 46.6 5.9 5.7e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|218883921|ref|YP_002428303.1| - 8.7e-08 32.4 32.7 1.9e-07 31.3 5.9 3.7 1 1 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|218883921|ref|YP_002428303.1| - 4.5e-06 25.4 65.2 5.1e-05 21.9 14.4 4.8 1 1 1 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|218883921|ref|YP_002428303.1| - 0.00022 20.6 3.5 0.00099 18.5 0.0 3.5 4 0 0 4 4 4 1 AAA domain DUF4200 PF13863.1 gi|218883921|ref|YP_002428303.1| - 0.00032 20.6 88.1 0.021 14.7 9.8 5.0 3 1 0 4 4 4 3 Domain of unknown function (DUF4200) AAA_29 PF13555.1 gi|218883921|ref|YP_002428303.1| - 0.00033 20.1 0.0 0.00065 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|218883921|ref|YP_002428303.1| - 0.00052 19.8 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Baculo_PEP_C PF04513.7 gi|218883921|ref|YP_002428303.1| - 0.00057 19.7 18.3 0.076 12.8 0.4 4.4 2 2 2 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus LXG PF04740.7 gi|218883921|ref|YP_002428303.1| - 0.0022 17.8 5.1 0.0022 17.8 3.5 4.7 2 2 1 4 4 4 1 LXG domain of WXG superfamily Laminin_II PF06009.7 gi|218883921|ref|YP_002428303.1| - 0.0035 17.1 9.3 0.0035 17.1 6.5 5.2 2 2 2 4 4 4 1 Laminin Domain II PspA_IM30 PF04012.7 gi|218883921|ref|YP_002428303.1| - 0.0063 15.9 8.2 0.0063 15.9 5.7 4.9 1 1 3 5 5 5 2 PspA/IM30 family IncA PF04156.9 gi|218883921|ref|YP_002428303.1| - 0.0088 15.6 80.3 0.031 13.8 12.6 4.8 3 1 1 4 4 4 3 IncA protein AAA_16 PF13191.1 gi|218883921|ref|YP_002428303.1| - 0.026 14.5 0.0 0.026 14.5 0.0 4.1 3 1 0 3 3 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|218883921|ref|YP_002428303.1| - 0.027 14.2 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain Reo_sigmaC PF04582.7 gi|218883921|ref|YP_002428303.1| - 0.044 12.9 12.5 0.35 10.0 2.4 3.5 2 2 2 4 4 4 0 Reovirus sigma C capsid protein FtsK_SpoIIIE PF01580.13 gi|218883921|ref|YP_002428303.1| - 0.051 13.0 0.0 0.051 13.0 0.0 4.6 3 2 0 3 3 2 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|218883921|ref|YP_002428303.1| - 0.051 13.2 1.1 0.11 12.2 0.0 2.2 2 0 0 2 2 1 0 NACHT domain ABC_tran PF00005.22 gi|218883921|ref|YP_002428303.1| - 0.078 13.2 0.0 0.078 13.2 0.0 5.8 3 2 0 3 3 2 0 ABC transporter AAA_22 PF13401.1 gi|218883921|ref|YP_002428303.1| - 0.13 12.3 0.0 0.13 12.3 0.0 4.8 4 1 0 6 6 5 0 AAA domain DEAD PF00270.24 gi|218883921|ref|YP_002428303.1| - 0.22 11.0 1.9 3 7.3 0.2 3.4 3 1 0 3 3 3 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|218883921|ref|YP_002428303.1| - 0.45 10.3 0.0 0.45 10.3 0.0 4.4 3 1 0 3 3 2 0 Type III restriction enzyme, res subunit APG6 PF04111.7 gi|218883921|ref|YP_002428303.1| - 1.5 7.7 81.7 0.45 9.5 9.7 4.3 2 2 2 4 4 4 0 Autophagy protein Apg6 WXG100 PF06013.7 gi|218883921|ref|YP_002428303.1| - 2.8 8.0 11.4 27 4.8 0.0 5.7 3 2 3 6 6 5 0 Proteins of 100 residues with WXG MCPsignal PF00015.16 gi|218883921|ref|YP_002428303.1| - 3.4 7.1 19.5 0.28 10.7 3.0 3.5 2 2 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain TraF_2 PF13729.1 gi|218883921|ref|YP_002428303.1| - 6.6 5.4 9.0 0.42 9.3 1.2 2.7 3 2 1 4 4 4 0 F plasmid transfer operon, TraF, protein AAA_10 PF12846.2 gi|218883922|ref|YP_002428304.1| - 9.3e-17 61.4 0.1 1.6e-15 57.3 0.1 2.2 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|218883922|ref|YP_002428304.1| - 2e-14 53.9 2.9 1.4e-11 44.6 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|218883922|ref|YP_002428304.1| - 2e-05 23.4 0.1 0.00011 20.9 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|218883922|ref|YP_002428304.1| - 9.6e-05 21.9 0.0 0.0036 16.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family PduV-EutP PF10662.4 gi|218883922|ref|YP_002428304.1| - 0.0062 16.0 0.2 0.1 12.1 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation DUF552 PF04472.7 gi|218883922|ref|YP_002428304.1| - 0.013 15.4 0.2 0.04 13.8 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF552) T2SE PF00437.15 gi|218883922|ref|YP_002428304.1| - 0.04 12.8 0.1 0.071 11.9 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|218883922|ref|YP_002428304.1| - 0.049 13.7 0.1 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Metallophos_2 PF12850.2 gi|218883924|ref|YP_002428306.1| - 4.9e-10 39.4 0.0 1.4e-09 37.9 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|218883924|ref|YP_002428306.1| - 8.3e-10 38.3 1.6 2.5e-09 36.8 1.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PALP PF00291.20 gi|218883925|ref|YP_002428307.1| - 1.5e-68 231.3 0.0 1.8e-68 231.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PfkB PF00294.19 gi|218883926|ref|YP_002428308.1| - 1.9e-55 188.1 0.1 2.2e-55 187.9 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|218883926|ref|YP_002428308.1| - 3.3e-05 23.2 0.0 4.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoC PF01791.4 gi|218883927|ref|YP_002428309.1| - 2e-30 105.8 0.0 2.4e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Sm_multidrug_ex PF06695.6 gi|218883928|ref|YP_002428310.1| - 1.1e-25 90.1 1.7 1.5e-25 89.6 1.2 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Bmp PF02608.9 gi|218883929|ref|YP_002428311.1| - 3.6e-32 111.3 0.6 5.3e-32 110.7 0.4 1.2 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_6 PF13458.1 gi|218883929|ref|YP_002428311.1| - 0.00098 18.5 1.6 0.0011 18.3 0.2 1.6 1 1 0 1 1 1 1 Periplasmic binding protein Carb_anhydrase PF00194.16 gi|218883929|ref|YP_002428311.1| - 0.053 12.4 0.1 0.082 11.8 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic-type carbonic anhydrase Hpr_kinase_N PF02603.11 gi|218883929|ref|YP_002428311.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus ABC_tran PF00005.22 gi|218883930|ref|YP_002428312.1| - 1.4e-39 135.5 0.1 1.8e-29 102.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|218883930|ref|YP_002428312.1| - 1.2e-06 28.7 0.2 1e-05 25.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|218883930|ref|YP_002428312.1| - 0.00013 21.4 0.0 0.0018 17.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF4339 PF14237.1 gi|218883930|ref|YP_002428312.1| - 0.0027 17.2 0.1 0.55 9.8 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4339) ArgK PF03308.11 gi|218883930|ref|YP_002428312.1| - 0.0031 16.3 1.3 0.72 8.5 0.6 2.4 2 0 0 2 2 2 2 ArgK protein AAA_23 PF13476.1 gi|218883930|ref|YP_002428312.1| - 0.0083 16.4 0.1 0.025 14.9 0.1 1.8 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218883930|ref|YP_002428312.1| - 0.0098 15.3 4.4 7.6 5.8 0.0 3.7 4 0 0 4 4 4 1 AAA-like domain AAA_30 PF13604.1 gi|218883930|ref|YP_002428312.1| - 0.011 15.3 0.7 7.7 6.0 0.0 3.1 3 1 0 4 4 4 0 AAA domain UPF0079 PF02367.12 gi|218883930|ref|YP_002428312.1| - 0.012 15.2 0.1 0.39 10.3 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|218883930|ref|YP_002428312.1| - 0.026 13.7 0.3 0.057 12.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF815 PF05673.8 gi|218883930|ref|YP_002428312.1| - 0.037 12.9 0.0 2.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|218883930|ref|YP_002428312.1| - 0.066 13.3 0.4 0.69 10.0 0.1 2.6 2 2 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|218883930|ref|YP_002428312.1| - 0.091 11.9 0.5 3.9 6.6 0.0 3.0 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|218883930|ref|YP_002428312.1| - 0.12 11.7 0.0 0.52 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|218883930|ref|YP_002428312.1| - 2.1 7.7 5.0 4.8 6.5 0.6 2.8 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain BPD_transp_2 PF02653.11 gi|218883931|ref|YP_002428313.1| - 1.6e-22 79.7 30.2 1.6e-22 79.7 20.9 2.7 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component GNVR PF13807.1 gi|218883931|ref|YP_002428313.1| - 0.52 10.1 5.6 5.6 6.7 0.2 3.6 3 0 0 3 3 3 0 G-rich domain on putative tyrosine kinase BPD_transp_2 PF02653.11 gi|218883932|ref|YP_002428314.1| - 1.7e-19 69.8 35.6 2.2e-19 69.4 24.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component tRNA-synt_1f PF01921.13 gi|218883933|ref|YP_002428315.1| - 2.2e-90 302.9 0.5 2.7e-90 302.6 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.7 gi|218883933|ref|YP_002428315.1| - 0.095 12.0 3.4 0.31 10.3 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|218883933|ref|YP_002428315.1| - 0.13 12.0 0.9 0.29 10.9 0.6 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|218883933|ref|YP_002428315.1| - 0.59 9.9 2.3 8.6 6.2 2.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain MFS_1 PF07690.11 gi|218883934|ref|YP_002428316.1| - 2.4e-24 85.7 37.6 5.1e-12 45.1 11.4 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily tRNA-synt_1 PF00133.17 gi|218883935|ref|YP_002428317.1| - 3.3e-50 170.7 0.0 1.2e-49 168.8 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|218883935|ref|YP_002428317.1| - 8.4e-20 70.7 5.1 5.7e-11 41.6 0.2 4.2 4 0 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|218883935|ref|YP_002428317.1| - 4.8e-15 55.6 0.0 9.3e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|218883935|ref|YP_002428317.1| - 1.8e-07 30.6 0.1 0.0069 15.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|218883935|ref|YP_002428317.1| - 0.001 17.8 0.0 0.003 16.2 0.0 1.8 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|218883935|ref|YP_002428317.1| - 0.0013 17.5 0.0 0.026 13.3 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (R) Amidohydro_4 PF13147.1 gi|218883936|ref|YP_002428318.1| - 2.4e-21 77.0 0.0 3.5e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|218883936|ref|YP_002428318.1| - 2.5e-14 53.6 0.0 9.7e-14 51.7 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|218883936|ref|YP_002428318.1| - 1.1e-11 44.4 0.5 3.2e-11 42.8 0.3 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|218883936|ref|YP_002428318.1| - 1.4e-07 31.0 0.1 0.00017 20.9 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family MarC PF01914.12 gi|218883937|ref|YP_002428319.1| - 8.5e-46 155.6 20.0 1e-45 155.3 13.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|218883937|ref|YP_002428319.1| - 0.00053 19.3 10.8 0.0014 17.9 7.5 1.6 1 1 0 1 1 1 1 LysE type translocator DUF3216 PF11505.3 gi|218883937|ref|YP_002428319.1| - 0.064 13.0 0.1 0.19 11.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3216) Cation_efflux PF01545.16 gi|218883938|ref|YP_002428320.1| - 2.6e-27 95.6 4.1 3.1e-27 95.4 2.8 1.0 1 0 0 1 1 1 1 Cation efflux family Fer4_13 PF13370.1 gi|218883939|ref|YP_002428321.1| - 1.8e-19 69.8 3.3 2.1e-19 69.6 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|218883939|ref|YP_002428321.1| - 4.8e-17 62.2 3.1 5.4e-17 62.1 2.1 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|218883939|ref|YP_002428321.1| - 0.00011 22.4 1.5 0.00015 21.9 1.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|218883939|ref|YP_002428321.1| - 0.0055 16.2 5.5 0.045 13.3 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|218883939|ref|YP_002428321.1| - 0.0071 16.1 6.1 0.015 15.1 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|218883939|ref|YP_002428321.1| - 0.0082 16.4 0.3 0.0082 16.4 0.2 2.3 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218883939|ref|YP_002428321.1| - 0.0096 16.2 2.4 0.034 14.5 1.7 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|218883939|ref|YP_002428321.1| - 0.077 12.8 3.4 0.19 11.5 2.4 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|218883939|ref|YP_002428321.1| - 0.44 10.3 3.3 1.4 8.8 2.3 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|218883939|ref|YP_002428321.1| - 2.6 7.9 6.6 1.9 8.3 1.2 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218883939|ref|YP_002428321.1| - 6.3 6.9 6.5 1 9.4 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M20 PF01546.23 gi|218883940|ref|YP_002428322.1| - 1.1e-40 139.1 0.0 1.3e-40 138.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|218883940|ref|YP_002428322.1| - 9.5e-21 73.6 0.0 1.5e-20 72.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain CPSase_L_D2 PF02786.12 gi|218883941|ref|YP_002428323.1| - 4.1e-36 124.2 0.0 6.2e-36 123.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|218883941|ref|YP_002428323.1| - 2.7e-22 78.9 0.0 6.4e-22 77.7 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|218883941|ref|YP_002428323.1| - 5.5e-20 71.3 0.0 1.1e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|218883941|ref|YP_002428323.1| - 4.8e-16 59.0 0.0 1.3e-15 57.6 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|218883941|ref|YP_002428323.1| - 1.3e-12 47.5 0.0 2.2e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|218883941|ref|YP_002428323.1| - 7.3e-11 41.3 0.0 7.3e-10 38.0 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|218883941|ref|YP_002428323.1| - 9e-10 38.2 0.0 4e-09 36.1 0.0 2.0 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|218883941|ref|YP_002428323.1| - 1.5e-09 37.4 0.0 2.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|218883941|ref|YP_002428323.1| - 0.011 14.5 0.0 0.02 13.6 0.0 1.4 1 0 0 1 1 1 0 YheC/D like ATP-grasp ATPgrasp_ST PF14397.1 gi|218883941|ref|YP_002428323.1| - 0.018 14.1 0.0 0.039 13.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp GARS_A PF01071.14 gi|218883941|ref|YP_002428323.1| - 0.044 13.3 0.0 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PPDK_N PF01326.14 gi|218883942|ref|YP_002428324.1| - 7.6e-102 340.7 0.0 2e-101 339.3 0.0 1.6 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|218883942|ref|YP_002428324.1| - 3.9e-88 295.1 0.0 7.1e-88 294.2 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|218883942|ref|YP_002428324.1| - 2e-29 100.9 0.6 5.9e-29 99.4 0.4 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.16 gi|218883942|ref|YP_002428324.1| - 0.099 12.8 0.4 0.46 10.6 0.0 2.3 3 0 0 3 3 3 0 Radical SAM superfamily cobW PF02492.14 gi|218883943|ref|YP_002428325.1| - 0.00025 20.5 0.0 0.0018 17.7 0.0 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|218883943|ref|YP_002428325.1| - 0.0026 17.1 1.5 0.016 14.6 0.4 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|218883943|ref|YP_002428325.1| - 0.0052 16.4 0.1 0.02 14.5 0.0 1.7 1 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|218883943|ref|YP_002428325.1| - 0.013 15.2 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.1 gi|218883943|ref|YP_002428325.1| - 0.034 14.0 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|218883943|ref|YP_002428325.1| - 0.05 12.3 1.9 0.063 12.0 0.3 1.7 2 0 0 2 2 2 0 ArgK protein Torsin PF06309.6 gi|218883943|ref|YP_002428325.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Torsin Metallophos PF00149.23 gi|218883944|ref|YP_002428326.1| - 5.7e-05 22.5 1.7 9.4e-05 21.8 1.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|218883944|ref|YP_002428326.1| - 0.00033 20.5 0.0 0.00057 19.7 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metalloenzyme PF01676.13 gi|218883944|ref|YP_002428326.1| - 0.018 14.4 0.0 0.021 14.1 0.0 1.1 1 0 0 1 1 1 0 Metalloenzyme superfamily T2SE PF00437.15 gi|218883945|ref|YP_002428327.1| - 5.9e-12 45.0 0.0 8.9e-12 44.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|218883945|ref|YP_002428327.1| - 1e-05 26.3 0.0 9.9e-05 23.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|218883945|ref|YP_002428327.1| - 0.00037 20.7 0.1 0.0015 18.8 0.0 2.2 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|218883945|ref|YP_002428327.1| - 0.0007 19.5 0.0 0.0043 16.9 0.0 2.2 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.1 gi|218883945|ref|YP_002428327.1| - 0.0013 18.1 0.0 0.0053 16.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|218883945|ref|YP_002428327.1| - 0.0016 18.4 0.0 0.004 17.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|218883945|ref|YP_002428327.1| - 0.0027 17.9 0.0 0.011 15.8 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|218883945|ref|YP_002428327.1| - 0.0028 17.7 0.0 0.045 13.9 0.0 2.7 3 0 0 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|218883945|ref|YP_002428327.1| - 0.0049 15.9 0.0 0.01 14.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|218883945|ref|YP_002428327.1| - 0.0054 16.1 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|218883945|ref|YP_002428327.1| - 0.0058 16.3 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|218883945|ref|YP_002428327.1| - 0.0079 15.6 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|218883945|ref|YP_002428327.1| - 0.008 15.9 1.9 0.23 11.1 0.0 3.0 3 1 0 3 3 2 1 NTPase AAA_19 PF13245.1 gi|218883945|ref|YP_002428327.1| - 0.0082 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|218883945|ref|YP_002428327.1| - 0.015 14.1 0.0 0.031 13.1 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.1 gi|218883945|ref|YP_002428327.1| - 0.016 15.2 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_3 PF07726.6 gi|218883945|ref|YP_002428327.1| - 0.019 14.6 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|218883945|ref|YP_002428327.1| - 0.019 14.4 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|218883945|ref|YP_002428327.1| - 0.023 14.3 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|218883945|ref|YP_002428327.1| - 0.023 14.5 0.0 0.056 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|218883945|ref|YP_002428327.1| - 0.031 14.7 0.0 0.62 10.5 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein ATP_bind_1 PF03029.12 gi|218883945|ref|YP_002428327.1| - 0.045 13.2 0.0 0.087 12.3 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.5 gi|218883945|ref|YP_002428327.1| - 0.049 12.8 0.0 0.12 11.5 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.4 gi|218883945|ref|YP_002428327.1| - 0.052 12.1 0.0 0.22 10.0 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.7 gi|218883945|ref|YP_002428327.1| - 0.062 12.3 0.7 0.23 10.5 0.0 2.2 3 0 0 3 3 3 0 Zeta toxin AAA_26 PF13500.1 gi|218883945|ref|YP_002428327.1| - 0.075 12.6 0.0 4.5 6.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|218883945|ref|YP_002428327.1| - 0.087 12.9 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.21 gi|218883945|ref|YP_002428327.1| - 0.094 12.1 0.0 0.25 10.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|218883945|ref|YP_002428327.1| - 0.16 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.1 gi|218883945|ref|YP_002428327.1| - 0.17 11.9 0.0 0.47 10.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Hjc PF01870.13 gi|218883946|ref|YP_002428328.1| - 1.1e-27 95.4 0.1 1.5e-27 95.0 0.1 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) RecU PF03838.9 gi|218883946|ref|YP_002428328.1| - 0.00012 21.6 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 Recombination protein U NERD PF08378.6 gi|218883946|ref|YP_002428328.1| - 0.042 14.1 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Nuclease-related domain DUF4342 PF14242.1 gi|218883947|ref|YP_002428329.1| - 0.23 11.2 1.9 0.31 10.8 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) Metallophos PF00149.23 gi|218883948|ref|YP_002428330.1| - 4.2e-15 55.6 1.5 7.1e-15 54.9 1.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|218883948|ref|YP_002428330.1| - 1.2e-05 25.1 0.0 2.3e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Rifin_STEVOR PF02009.11 gi|218883948|ref|YP_002428330.1| - 0.0042 16.7 10.2 0.0061 16.2 7.1 1.2 1 0 0 1 1 1 1 Rifin/stevor family DUF2223 PF09985.4 gi|218883949|ref|YP_002428331.1| - 4.6e-63 212.5 2.8 9.5e-63 211.5 1.9 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) ABC_transp_aux PF09822.4 gi|218883949|ref|YP_002428331.1| - 6.6e-05 22.4 0.0 0.00023 20.7 0.0 1.7 2 0 0 2 2 2 1 ABC-type uncharacterized transport system Adeno_E3_CR2 PF02439.10 gi|218883949|ref|YP_002428331.1| - 1.1 8.8 3.8 2.6 7.6 2.7 1.6 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 SBP_bac_6 PF13343.1 gi|218883950|ref|YP_002428332.1| - 4.4e-16 58.9 0.2 7e-16 58.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|218883950|ref|YP_002428332.1| - 5.4e-15 55.8 0.3 1.5e-14 54.4 0.0 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|218883950|ref|YP_002428332.1| - 3.8e-07 30.1 1.0 8.4e-07 29.0 0.0 2.0 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein Shisa PF13908.1 gi|218883950|ref|YP_002428332.1| - 0.034 14.3 1.2 0.064 13.4 0.8 1.4 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator SoxE PF06525.6 gi|218883950|ref|YP_002428332.1| - 0.04 13.1 4.7 0.07 12.4 3.3 1.3 1 0 0 1 1 1 0 Sulfocyanin (SoxE) Sporozoite_P67 PF05642.6 gi|218883950|ref|YP_002428332.1| - 1.3 6.8 5.6 1.8 6.3 3.9 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen Med3 PF11593.3 gi|218883950|ref|YP_002428332.1| - 2.1 7.4 9.6 3.4 6.8 6.6 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal Mucin PF01456.12 gi|218883950|ref|YP_002428332.1| - 5.8 6.6 29.8 11 5.7 20.6 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein BPD_transp_1 PF00528.17 gi|218883951|ref|YP_002428333.1| - 3.8e-18 65.6 52.2 1.5e-11 44.1 16.6 5.6 4 2 2 6 6 6 3 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|218883952|ref|YP_002428334.1| - 1.6e-34 119.1 0.0 2.5e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218883952|ref|YP_002428334.1| - 2.2e-10 41.0 0.0 1.2e-05 25.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|218883952|ref|YP_002428334.1| - 1.7e-08 34.2 0.4 1e-06 28.5 0.0 3.3 4 0 0 4 4 3 1 TOBE domain AAA_15 PF13175.1 gi|218883952|ref|YP_002428334.1| - 6.2e-05 22.2 0.0 0.029 13.4 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|218883952|ref|YP_002428334.1| - 6.9e-05 23.2 0.1 0.00014 22.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|218883952|ref|YP_002428334.1| - 0.00053 20.1 1.4 0.0081 16.2 1.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218883952|ref|YP_002428334.1| - 0.001 18.3 0.4 0.042 13.0 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|218883952|ref|YP_002428334.1| - 0.0024 17.6 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase RNA_helicase PF00910.17 gi|218883952|ref|YP_002428334.1| - 0.0031 17.6 0.0 0.0056 16.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_16 PF13191.1 gi|218883952|ref|YP_002428334.1| - 0.0061 16.5 0.2 0.015 15.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|218883952|ref|YP_002428334.1| - 0.0075 16.4 0.3 0.073 13.2 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|218883952|ref|YP_002428334.1| - 0.017 13.8 0.0 0.025 13.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|218883952|ref|YP_002428334.1| - 0.022 14.6 0.0 0.052 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|218883952|ref|YP_002428334.1| - 0.037 13.7 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_28 PF13521.1 gi|218883952|ref|YP_002428334.1| - 0.046 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|218883952|ref|YP_002428334.1| - 0.061 12.7 0.1 0.59 9.5 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|218883952|ref|YP_002428334.1| - 0.061 14.1 0.4 0.15 12.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|218883952|ref|YP_002428334.1| - 0.08 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|218883952|ref|YP_002428334.1| - 0.17 11.0 0.0 0.3 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Metallophos_2 PF12850.2 gi|218883953|ref|YP_002428335.1| - 5.5e-21 75.0 0.0 6.9e-21 74.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|218883953|ref|YP_002428335.1| - 3.6e-05 23.2 0.7 0.02 14.3 0.0 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF3667 PF12412.3 gi|218883954|ref|YP_002428336.1| - 0.0014 17.8 0.4 0.024 13.9 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3667) DUF211 PF02680.9 gi|218883955|ref|YP_002428337.1| - 4.7e-32 109.6 7.6 5.3e-32 109.4 5.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|218883955|ref|YP_002428337.1| - 0.48 10.6 3.2 3.3 7.9 2.2 2.2 1 1 0 1 1 1 0 Heavy-metal-associated domain RHH_1 PF01402.16 gi|218883956|ref|YP_002428338.1| - 0.091 12.6 0.5 0.28 11.1 0.1 2.0 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family TrmB PF01978.14 gi|218883957|ref|YP_002428339.1| - 0.0003 20.4 1.4 0.00072 19.2 0.6 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.6 gi|218883957|ref|YP_002428339.1| - 0.052 13.4 0.2 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PaaX PF07848.7 gi|218883957|ref|YP_002428339.1| - 0.058 13.3 0.2 0.14 12.2 0.1 1.6 2 0 0 2 2 2 0 PaaX-like protein Penicillinase_R PF03965.11 gi|218883957|ref|YP_002428339.1| - 0.073 13.1 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor PhoU_div PF01865.11 gi|218883958|ref|YP_002428340.1| - 1.5e-24 86.3 3.3 1.8e-24 86.1 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|218883958|ref|YP_002428340.1| - 3.5e-05 24.1 1.4 0.0015 18.8 0.2 2.3 2 0 0 2 2 2 1 PhoU domain Plasmid_parti PF01672.11 gi|218883958|ref|YP_002428340.1| - 0.007 16.7 2.8 0.92 9.9 0.2 3.2 1 1 0 2 2 2 1 Putative plasmid partition protein TBPIP PF07106.8 gi|218883958|ref|YP_002428340.1| - 0.21 11.1 2.9 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NTP_transf_3 PF12804.2 gi|218883959|ref|YP_002428341.1| - 4.5e-25 88.5 0.0 5.7e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|218883959|ref|YP_002428341.1| - 2.2e-06 27.3 0.0 2.8e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|218883959|ref|YP_002428341.1| - 6e-06 26.0 0.0 9e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|218883959|ref|YP_002428341.1| - 0.0043 16.8 0.0 0.0071 16.1 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 CTP_transf_3 PF02348.14 gi|218883959|ref|YP_002428341.1| - 0.03 13.9 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase NTP_transferase PF00483.18 gi|218883959|ref|YP_002428341.1| - 0.045 13.0 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase HypD PF01924.11 gi|218883960|ref|YP_002428342.1| - 5.9e-129 429.8 0.0 7.1e-129 429.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|218883960|ref|YP_002428342.1| - 0.034 13.9 0.1 0.08 12.7 0.1 1.5 1 0 0 1 1 1 0 zf-RING of BARD1-type protein MTHFR_C PF12225.3 gi|218883960|ref|YP_002428342.1| - 0.18 11.2 1.2 0.31 10.5 0.9 1.3 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal Radical_SAM PF04055.16 gi|218883961|ref|YP_002428343.1| - 5.7e-17 62.3 0.0 1.1e-16 61.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Orn_Arg_deC_N PF02784.11 gi|218883962|ref|YP_002428344.1| - 5e-29 101.2 0.0 8.2e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|218883962|ref|YP_002428344.1| - 1.5e-18 66.5 0.2 1.8e-17 63.1 0.1 2.5 2 1 0 2 2 2 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XH PF03469.9 gi|218883963|ref|YP_002428345.1| - 0.03 13.9 0.1 0.032 13.8 0.1 1.1 1 0 0 1 1 1 0 XH domain NikR_C PF08753.6 gi|218883964|ref|YP_002428346.1| - 6.5e-15 54.7 0.8 1e-14 54.1 0.6 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF2373 PF10180.4 gi|218883964|ref|YP_002428346.1| - 0.059 12.9 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2373) RHH_1 PF01402.16 gi|218883964|ref|YP_002428346.1| - 0.079 12.8 0.0 0.27 11.2 0.0 1.9 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Fe_dep_repr_C PF02742.10 gi|218883965|ref|YP_002428347.1| - 1.5e-17 62.9 2.0 2.6e-17 62.2 1.1 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|218883965|ref|YP_002428347.1| - 5.8e-15 54.9 0.0 1e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|218883965|ref|YP_002428347.1| - 2.2e-07 30.4 0.0 4.5e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|218883965|ref|YP_002428347.1| - 5.3e-07 29.2 0.0 1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|218883965|ref|YP_002428347.1| - 5e-06 26.3 0.2 7.4e-06 25.7 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|218883965|ref|YP_002428347.1| - 5.3e-06 26.6 0.0 1.3e-05 25.4 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|218883965|ref|YP_002428347.1| - 7.1e-05 22.4 0.1 0.00028 20.5 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|218883965|ref|YP_002428347.1| - 9.4e-05 21.7 0.1 0.00024 20.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|218883965|ref|YP_002428347.1| - 0.0001 21.8 0.0 0.00031 20.2 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain HTH_45 PF14947.1 gi|218883965|ref|YP_002428347.1| - 0.00015 21.5 0.1 0.00022 20.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|218883965|ref|YP_002428347.1| - 0.00053 19.6 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|218883965|ref|YP_002428347.1| - 0.00087 19.3 0.0 0.0031 17.5 0.0 2.0 2 1 1 3 3 3 1 Transcriptional regulator HTH_IclR PF09339.5 gi|218883965|ref|YP_002428347.1| - 0.0016 17.9 0.0 0.0035 16.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|218883965|ref|YP_002428347.1| - 0.003 17.2 0.0 0.006 16.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|218883965|ref|YP_002428347.1| - 0.0038 16.6 0.0 0.0078 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|218883965|ref|YP_002428347.1| - 0.0051 16.3 0.0 0.0083 15.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) IF2_N PF04760.10 gi|218883965|ref|YP_002428347.1| - 0.013 15.1 0.0 0.086 12.5 0.0 2.3 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region rRNA_processing PF08524.6 gi|218883965|ref|YP_002428347.1| - 0.02 14.6 0.2 0.023 14.4 0.1 1.2 1 0 0 1 1 1 0 rRNA processing HTH_34 PF13601.1 gi|218883965|ref|YP_002428347.1| - 0.032 14.2 0.0 0.058 13.4 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|218883965|ref|YP_002428347.1| - 0.035 14.3 0.1 0.16 12.2 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Topoisom_bac PF01131.15 gi|218883965|ref|YP_002428347.1| - 0.035 12.9 0.0 0.049 12.4 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_38 PF13936.1 gi|218883965|ref|YP_002428347.1| - 0.038 13.5 1.0 0.11 12.0 0.0 2.3 3 1 0 3 3 2 0 Helix-turn-helix domain SecA_PP_bind PF01043.15 gi|218883965|ref|YP_002428347.1| - 0.045 14.1 0.0 0.052 13.9 0.0 1.2 1 0 0 1 1 1 0 SecA preprotein cross-linking domain TFIIE_alpha PF02002.12 gi|218883965|ref|YP_002428347.1| - 0.076 12.5 0.1 0.24 10.9 0.0 1.8 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_23 PF13384.1 gi|218883965|ref|YP_002428347.1| - 0.099 12.3 0.1 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Mrr_N PF14338.1 gi|218883965|ref|YP_002428347.1| - 0.1 12.7 0.2 0.34 11.0 0.0 1.9 3 0 0 3 3 2 0 Mrr N-terminal domain HTH_29 PF13551.1 gi|218883965|ref|YP_002428347.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix PqqD PF05402.7 gi|218883965|ref|YP_002428347.1| - 0.14 12.2 0.2 11 6.1 0.0 3.0 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Thioredoxin_3 PF13192.1 gi|218883966|ref|YP_002428348.1| - 2e-09 37.1 0.0 2.4e-06 27.2 0.1 2.5 2 0 0 2 2 2 2 Thioredoxin domain Glutaredoxin PF00462.19 gi|218883966|ref|YP_002428348.1| - 1.1e-05 25.3 0.5 0.00013 21.8 0.1 2.4 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_9 PF14595.1 gi|218883966|ref|YP_002428348.1| - 0.00081 18.9 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.15 gi|218883966|ref|YP_002428348.1| - 0.026 14.1 0.1 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.1 gi|218883966|ref|YP_002428348.1| - 0.24 11.6 5.9 4.1 7.6 1.3 3.1 2 2 1 3 3 3 0 Thioredoxin-like domain HTH_24 PF13412.1 gi|218883967|ref|YP_002428349.1| - 1.6e-05 24.1 0.1 1.6e-05 24.1 0.1 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|218883967|ref|YP_002428349.1| - 1.7e-05 24.4 0.1 0.00022 20.8 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|218883967|ref|YP_002428349.1| - 1.8e-05 24.4 0.1 4.4e-05 23.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix EAP30 PF04157.11 gi|218883967|ref|YP_002428349.1| - 0.00082 18.5 0.7 0.36 9.9 0.0 2.5 2 1 0 2 2 2 2 EAP30/Vps36 family HTH_IclR PF09339.5 gi|218883967|ref|YP_002428349.1| - 0.0012 18.3 0.0 0.0027 17.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|218883967|ref|YP_002428349.1| - 0.0043 16.6 0.0 0.01 15.4 0.0 1.7 1 0 0 1 1 1 1 MarR family GCOM2 PF15328.1 gi|218883967|ref|YP_002428349.1| - 0.0045 16.7 1.3 0.0057 16.4 0.9 1.2 1 0 0 1 1 1 1 Putative GRINL1B complex locus protein 2 Fe_dep_repress PF01325.14 gi|218883967|ref|YP_002428349.1| - 0.0045 16.8 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain ATG16 PF08614.6 gi|218883967|ref|YP_002428349.1| - 0.0064 16.3 3.3 0.0094 15.7 2.3 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HTH_27 PF13463.1 gi|218883967|ref|YP_002428349.1| - 0.011 15.9 0.0 0.071 13.4 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|218883967|ref|YP_002428349.1| - 0.012 15.6 0.3 0.12 12.5 0.0 2.7 3 1 0 3 3 3 0 Transcriptional regulator MarR PF01047.17 gi|218883967|ref|YP_002428349.1| - 0.03 14.0 0.1 0.099 12.3 0.0 2.0 2 0 0 2 2 2 0 MarR family Ribosomal_S19e PF01090.14 gi|218883967|ref|YP_002428349.1| - 0.042 13.2 0.0 0.098 12.0 0.0 1.6 1 0 0 1 1 1 0 Ribosomal protein S19e DUF4613 PF15390.1 gi|218883967|ref|YP_002428349.1| - 0.07 11.2 0.6 0.087 10.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4613) DUF2250 PF10007.4 gi|218883967|ref|YP_002428349.1| - 0.1 12.4 1.4 0.27 11.1 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) MotA_activ PF09114.5 gi|218883967|ref|YP_002428349.1| - 0.13 12.0 0.0 0.69 9.7 0.0 2.2 2 0 0 2 2 2 0 Transcription factor MotA, activation domain DUF2360 PF10152.4 gi|218883967|ref|YP_002428349.1| - 6.2 7.1 7.3 3.6 7.8 0.0 2.2 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) Wyosine_form PF08608.7 gi|218883968|ref|YP_002428350.1| - 9.2e-20 70.5 0.0 1.6e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|218883968|ref|YP_002428350.1| - 7.7e-17 61.9 0.2 2.6e-16 60.2 0.1 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Biotin_lipoyl PF00364.17 gi|218883969|ref|YP_002428351.1| - 6.2e-14 51.3 8.0 1.6e-13 50.1 5.5 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|218883969|ref|YP_002428351.1| - 3.1e-11 42.7 4.0 8.5e-06 25.3 0.4 2.4 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|218883969|ref|YP_002428351.1| - 9.6e-06 25.8 2.3 0.096 13.0 0.1 2.7 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|218883969|ref|YP_002428351.1| - 0.00011 21.5 1.2 0.00011 21.5 0.8 2.9 1 1 1 3 3 3 1 HlyD family secretion protein HlyD PF00529.15 gi|218883969|ref|YP_002428351.1| - 0.0046 16.3 4.5 0.091 12.0 0.4 2.1 2 0 0 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|218883969|ref|YP_002428351.1| - 0.0051 16.4 7.7 0.052 13.2 0.2 2.4 1 1 1 2 2 2 2 Glycine cleavage H-protein Hjc PF01870.13 gi|218883969|ref|YP_002428351.1| - 0.039 13.5 4.0 0.039 13.5 1.1 2.0 1 1 1 2 2 2 0 Archaeal holliday junction resolvase (hjc) DUF2118 PF09891.4 gi|218883969|ref|YP_002428351.1| - 0.052 13.2 9.9 0.07 12.8 6.4 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) DZF PF07528.9 gi|218883969|ref|YP_002428351.1| - 0.091 12.1 0.5 0.14 11.5 0.3 1.3 1 0 0 1 1 1 0 DZF domain RnfC_N PF13375.1 gi|218883969|ref|YP_002428351.1| - 0.17 11.6 2.9 5.2 6.8 0.7 2.3 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain Carboxyl_trans PF01039.17 gi|218883971|ref|YP_002428353.1| - 7e-187 621.6 0.0 7.9e-187 621.5 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|218883971|ref|YP_002428353.1| - 1.1e-05 24.7 0.2 2.5e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DUF417 PF04224.7 gi|218883971|ref|YP_002428353.1| - 0.018 14.3 0.1 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Thiolase_C PF02803.13 gi|218883972|ref|YP_002428354.1| - 3.1e-13 49.2 0.1 6.6e-13 48.1 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|218883972|ref|YP_002428354.1| - 8.6e-09 34.7 0.5 1.3e-07 30.8 0.1 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|218883972|ref|YP_002428354.1| - 0.00044 19.8 2.4 0.34 10.5 0.0 3.2 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|218883972|ref|YP_002428354.1| - 0.0015 18.3 0.2 0.33 10.7 0.0 2.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.21 gi|218883972|ref|YP_002428354.1| - 0.0065 15.9 3.6 0.0065 15.9 2.5 3.2 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain DUF2231 PF09990.4 gi|218883972|ref|YP_002428354.1| - 0.32 11.3 2.8 8.7 6.7 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2231) PqqD PF05402.7 gi|218883973|ref|YP_002428355.1| - 1.2e-10 41.2 0.2 1.7e-10 40.7 0.2 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) tRNA_anti-codon PF01336.20 gi|218883974|ref|YP_002428356.1| - 1.9e-09 37.2 0.6 2.5e-09 36.8 0.4 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF123 PF01986.11 gi|218883975|ref|YP_002428357.1| - 1.6e-20 73.0 0.0 2.1e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF296 PF03479.10 gi|218883976|ref|YP_002428358.1| - 3.6e-18 65.3 1.2 4.1e-18 65.1 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) tRNA_anti-like PF12869.2 gi|218883976|ref|YP_002428358.1| - 0.0063 16.0 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 tRNA_anti-like Auxin_BP PF02041.11 gi|218883976|ref|YP_002428358.1| - 0.032 13.6 0.1 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein AAA_5 PF07728.9 gi|218883978|ref|YP_002428360.1| - 2.1e-27 95.5 0.7 1.8e-26 92.5 0.0 2.7 3 1 1 4 4 4 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|218883978|ref|YP_002428360.1| - 1.4e-07 31.1 0.0 2.1e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|218883978|ref|YP_002428360.1| - 1.1e-06 28.9 0.1 2.7e-05 24.3 0.0 2.9 2 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|218883978|ref|YP_002428360.1| - 9.3e-06 25.7 1.2 2.8e-05 24.1 0.1 2.2 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|218883978|ref|YP_002428360.1| - 7.9e-05 22.8 1.4 0.005 16.9 0.0 3.7 2 2 1 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|218883978|ref|YP_002428360.1| - 0.00013 21.1 0.0 0.0011 18.1 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|218883978|ref|YP_002428360.1| - 0.001 18.2 0.1 0.0033 16.4 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|218883978|ref|YP_002428360.1| - 0.002 18.0 0.1 0.041 13.8 0.0 2.6 2 1 1 3 3 3 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|218883978|ref|YP_002428360.1| - 0.0021 17.5 0.0 0.012 15.1 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|218883978|ref|YP_002428360.1| - 0.0045 15.8 0.0 0.0087 14.8 0.0 1.5 1 0 0 1 1 1 1 MCM2/3/5 family AAA_17 PF13207.1 gi|218883978|ref|YP_002428360.1| - 0.04 14.7 2.1 0.23 12.3 0.0 2.6 1 1 1 2 2 2 0 AAA domain VWA_2 PF13519.1 gi|218883979|ref|YP_002428361.1| - 1e-06 28.9 0.0 2e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|218883979|ref|YP_002428361.1| - 1e-05 24.7 0.0 2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|218883979|ref|YP_002428361.1| - 3.8e-05 23.4 0.4 0.00026 20.7 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|218883979|ref|YP_002428361.1| - 0.0002 21.0 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Aminotran_1_2 PF00155.16 gi|218883980|ref|YP_002428362.1| - 4.6e-44 150.8 0.0 5.2e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|218883980|ref|YP_002428362.1| - 1.7e-09 36.7 0.0 2.7e-09 36.0 0.0 1.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|218883980|ref|YP_002428362.1| - 4.7e-05 22.6 0.0 7.1e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|218883980|ref|YP_002428362.1| - 0.052 11.9 0.0 0.078 11.4 0.0 1.1 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain DegT_DnrJ_EryC1 PF01041.12 gi|218883980|ref|YP_002428362.1| - 0.053 12.5 0.0 0.14 11.2 0.0 1.6 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PhoU_div PF01865.11 gi|218883981|ref|YP_002428363.1| - 5.6e-15 55.0 6.5 8.2e-15 54.5 4.5 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|218883981|ref|YP_002428363.1| - 8.4e-08 32.5 8.3 0.0017 18.7 1.0 2.2 2 0 0 2 2 2 2 PhoU domain TPR_11 PF13414.1 gi|218883981|ref|YP_002428363.1| - 0.0036 16.9 0.1 0.0098 15.5 0.0 1.8 2 0 0 2 2 2 1 TPR repeat THUMP PF02926.12 gi|218883982|ref|YP_002428364.1| - 0.0038 17.1 0.1 0.0062 16.4 0.1 1.3 1 0 0 1 1 1 1 THUMP domain XdhC_C PF13478.1 gi|218883984|ref|YP_002428366.1| - 7.9e-29 100.7 0.0 1e-28 100.3 0.0 1.1 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|218883984|ref|YP_002428366.1| - 1e-18 66.6 0.1 1.6e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.13 gi|218883984|ref|YP_002428366.1| - 0.00076 19.4 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|218883984|ref|YP_002428366.1| - 0.028 13.8 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|218883984|ref|YP_002428366.1| - 0.028 13.9 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|218883984|ref|YP_002428366.1| - 0.034 13.3 0.1 0.093 11.8 0.0 1.6 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|218883984|ref|YP_002428366.1| - 0.053 13.1 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|218883986|ref|YP_002428368.1| - 8.4e-19 67.9 0.0 1.2e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|218883986|ref|YP_002428368.1| - 5.9e-07 29.6 0.0 1e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|218883986|ref|YP_002428368.1| - 5.6e-05 23.2 0.0 7.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|218883986|ref|YP_002428368.1| - 6.9e-05 23.2 0.0 0.00013 22.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.1 gi|218883986|ref|YP_002428368.1| - 0.0015 18.5 0.0 0.0026 17.8 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.13 gi|218883986|ref|YP_002428368.1| - 0.0016 18.1 0.1 0.0034 17.0 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|218883986|ref|YP_002428368.1| - 0.0044 16.4 0.0 0.0061 16.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_7 PF13241.1 gi|218883986|ref|YP_002428368.1| - 0.0049 17.0 0.0 0.0091 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding NmrA PF05368.8 gi|218883986|ref|YP_002428368.1| - 0.02 14.1 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family FAD_binding_3 PF01494.14 gi|218883986|ref|YP_002428368.1| - 0.037 13.0 0.0 0.065 12.2 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain ERCC4 PF02732.10 gi|218883987|ref|YP_002428369.1| - 6.6e-20 71.3 0.0 1.3e-19 70.4 0.0 1.4 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|218883987|ref|YP_002428369.1| - 1.2e-11 44.3 0.0 2.4e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|218883987|ref|YP_002428369.1| - 7.9e-11 41.9 0.1 1.2e-09 38.2 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|218883987|ref|YP_002428369.1| - 1.2e-07 31.0 0.1 1.8e-06 27.3 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|218883987|ref|YP_002428369.1| - 0.0067 15.8 0.1 0.017 14.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial RNA polymerase, alpha chain C terminal domain HHH_3 PF12836.2 gi|218883987|ref|YP_002428369.1| - 0.057 13.3 0.1 0.31 11.0 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix motif Pex2_Pex12 PF04757.9 gi|218883987|ref|YP_002428369.1| - 0.098 12.0 0.1 0.14 11.5 0.1 1.3 1 1 0 1 1 1 0 Pex2 / Pex12 amino terminal region 5_3_exonuc PF01367.15 gi|218883987|ref|YP_002428369.1| - 0.12 12.5 0.1 5.1 7.4 0.0 2.4 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Glycos_transf_4 PF00953.16 gi|218883988|ref|YP_002428370.1| - 5.2e-30 104.3 13.9 5.2e-30 104.3 9.6 2.0 2 1 0 2 2 2 1 Glycosyl transferase family 4 PRANC PF09372.5 gi|218883990|ref|YP_002428372.1| - 0.021 14.7 0.1 0.022 14.7 0.1 1.1 1 0 0 1 1 1 0 PRANC domain Y1_Tnp PF01797.11 gi|218883992|ref|YP_002428374.1| - 6.3e-34 116.4 0.0 7e-34 116.2 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|218883993|ref|YP_002428375.1| - 7.5e-60 202.1 0.0 9.6e-60 201.8 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|218883993|ref|YP_002428375.1| - 6e-11 41.8 0.0 9.9e-11 41.1 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|218883993|ref|YP_002428375.1| - 0.12 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) E1-E2_ATPase PF00122.15 gi|218883995|ref|YP_002428377.1| - 1.2e-74 250.2 3.7 1.2e-74 250.2 2.6 2.1 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|218883995|ref|YP_002428377.1| - 2.4e-45 154.2 2.8 2.4e-45 154.2 2.0 2.4 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|218883995|ref|YP_002428377.1| - 4.2e-32 112.3 0.2 9.9e-32 111.0 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|218883995|ref|YP_002428377.1| - 2.1e-22 78.3 0.0 4.5e-22 77.2 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|218883995|ref|YP_002428377.1| - 3.7e-18 66.3 0.0 9.7e-18 65.0 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|218883995|ref|YP_002428377.1| - 8.1e-13 48.1 0.0 1.9e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|218883995|ref|YP_002428377.1| - 1.9e-05 24.3 0.2 0.0022 17.6 0.1 2.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase 4HBT PF03061.17 gi|218883996|ref|YP_002428378.1| - 8.5e-05 22.6 0.0 0.00011 22.1 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily RuvB_C PF05491.8 gi|218883997|ref|YP_002428379.1| - 0.079 12.5 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus MCM PF00493.18 gi|218883998|ref|YP_002428380.1| - 1.3e-137 458.0 0.0 2.2e-137 457.3 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|218883998|ref|YP_002428380.1| - 1.9e-25 89.6 0.6 6.2e-25 88.0 0.1 2.2 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|218883998|ref|YP_002428380.1| - 6.7e-09 35.6 0.0 1.4e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|218883998|ref|YP_002428380.1| - 3.1e-06 26.4 0.0 0.00061 19.0 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|218883998|ref|YP_002428380.1| - 0.00067 19.2 0.0 0.0019 17.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|218883998|ref|YP_002428380.1| - 0.0034 16.8 0.1 0.04 13.4 0.1 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain tRNA_anti-like PF12869.2 gi|218883998|ref|YP_002428380.1| - 0.011 15.2 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 tRNA_anti-like TPR_11 PF13414.1 gi|218883998|ref|YP_002428380.1| - 0.098 12.3 0.3 4.9 6.8 0.0 2.5 2 0 0 2 2 2 0 TPR repeat Sld5 PF05916.6 gi|218883999|ref|YP_002428381.1| - 3.3e-07 30.5 0.3 5e-07 29.9 0.2 1.3 1 0 0 1 1 1 1 GINS complex protein FMN_bind_2 PF04299.7 gi|218883999|ref|YP_002428381.1| - 0.0085 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative FMN-binding domain DUF2275 PF10039.4 gi|218883999|ref|YP_002428381.1| - 0.064 13.1 0.0 4.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2275) Rep_fac_C PF08542.6 gi|218884000|ref|YP_002428382.1| - 1.1e-24 86.1 0.2 5.1e-24 84.0 0.0 2.2 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|218884000|ref|YP_002428382.1| - 2.7e-15 56.7 0.0 5.2e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|218884000|ref|YP_002428382.1| - 5e-14 52.2 0.0 1e-11 44.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|218884000|ref|YP_002428382.1| - 4.8e-10 38.7 0.0 1.3e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|218884000|ref|YP_002428382.1| - 5.4e-09 35.4 0.0 1.5e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|218884000|ref|YP_002428382.1| - 5.7e-08 32.7 0.1 7.2e-07 29.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|218884000|ref|YP_002428382.1| - 2.7e-07 30.8 0.9 0.026 14.6 0.0 2.9 2 2 1 3 3 3 2 AAA domain DNA_pol3_delta PF06144.8 gi|218884000|ref|YP_002428382.1| - 6.1e-07 29.1 0.0 1.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|218884000|ref|YP_002428382.1| - 1.1e-06 28.7 0.8 0.00014 21.9 0.0 2.9 2 2 1 3 3 3 1 AAA ATPase domain TIP49 PF06068.8 gi|218884000|ref|YP_002428382.1| - 6.6e-06 25.0 0.0 0.0088 14.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|218884000|ref|YP_002428382.1| - 8.2e-06 25.6 0.1 6.9e-05 22.5 0.0 2.6 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|218884000|ref|YP_002428382.1| - 1.6e-05 24.4 0.0 3.3e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|218884000|ref|YP_002428382.1| - 2.5e-05 23.8 0.0 6.1e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|218884000|ref|YP_002428382.1| - 8.6e-05 21.7 0.0 0.0036 16.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|218884000|ref|YP_002428382.1| - 9.3e-05 22.7 0.0 0.00028 21.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|218884000|ref|YP_002428382.1| - 0.00017 21.3 0.0 0.00045 19.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|218884000|ref|YP_002428382.1| - 0.00017 20.9 0.1 0.034 13.3 0.0 2.5 1 1 1 2 2 2 1 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|218884000|ref|YP_002428382.1| - 0.00048 20.1 0.0 0.0015 18.5 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|218884000|ref|YP_002428382.1| - 0.0017 17.7 0.6 0.036 13.4 0.1 2.7 2 2 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|218884000|ref|YP_002428382.1| - 0.0021 17.5 0.1 0.028 13.8 0.1 2.7 1 1 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|218884000|ref|YP_002428382.1| - 0.0022 18.7 0.1 0.0059 17.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|218884000|ref|YP_002428382.1| - 0.0024 17.3 0.2 0.021 14.2 0.0 2.4 2 2 0 2 2 2 1 FtsK/SpoIIIE family DNA_pol3_gamma3 PF12169.3 gi|218884000|ref|YP_002428382.1| - 0.0028 17.4 0.3 0.82 9.4 0.0 3.2 3 0 0 3 3 3 1 DNA polymerase III subunits gamma and tau domain III SNF2_N PF00176.18 gi|218884000|ref|YP_002428382.1| - 0.0036 16.1 0.0 0.13 11.0 0.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_2 PF07724.9 gi|218884000|ref|YP_002428382.1| - 0.0062 16.4 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Sigma54_activat PF00158.21 gi|218884000|ref|YP_002428382.1| - 0.0062 16.0 0.1 0.3 10.5 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|218884000|ref|YP_002428382.1| - 0.0072 15.2 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_23 PF13476.1 gi|218884000|ref|YP_002428382.1| - 0.0073 16.6 0.0 0.0097 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|218884000|ref|YP_002428382.1| - 0.0076 15.9 0.0 0.57 9.8 0.0 2.5 1 1 1 2 2 2 1 NTPase ResIII PF04851.10 gi|218884000|ref|YP_002428382.1| - 0.0084 15.9 0.0 0.058 13.2 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_33 PF13671.1 gi|218884000|ref|YP_002428382.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|218884000|ref|YP_002428382.1| - 0.026 14.1 0.0 0.35 10.5 0.0 2.4 1 1 0 1 1 1 0 NACHT domain APS_kinase PF01583.15 gi|218884000|ref|YP_002428382.1| - 0.03 13.9 0.0 0.082 12.5 0.0 1.6 2 0 0 2 2 1 0 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|218884000|ref|YP_002428382.1| - 0.034 13.8 0.0 0.07 12.8 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|218884000|ref|YP_002428382.1| - 0.035 14.2 0.0 0.07 13.3 0.0 1.7 1 1 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|218884000|ref|YP_002428382.1| - 0.043 12.9 0.0 0.094 11.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|218884000|ref|YP_002428382.1| - 0.044 12.9 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_11 PF13086.1 gi|218884000|ref|YP_002428382.1| - 0.048 13.2 0.0 0.069 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|218884000|ref|YP_002428382.1| - 0.053 12.4 0.0 0.21 10.5 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) P-II PF00543.17 gi|218884000|ref|YP_002428382.1| - 0.055 13.9 0.1 0.19 12.2 0.0 1.9 2 0 0 2 2 1 0 Nitrogen regulatory protein P-II AAA_28 PF13521.1 gi|218884000|ref|YP_002428382.1| - 0.057 13.3 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Torsin PF06309.6 gi|218884000|ref|YP_002428382.1| - 0.06 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Torsin T2SE PF00437.15 gi|218884000|ref|YP_002428382.1| - 0.06 12.2 0.0 0.2 10.5 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein RelB_N PF12910.2 gi|218884000|ref|YP_002428382.1| - 0.066 12.5 0.8 3 7.2 0.0 2.8 3 0 0 3 3 2 0 Antitoxin of toxin-antitoxin stability system N-terminal AAA_30 PF13604.1 gi|218884000|ref|YP_002428382.1| - 0.08 12.5 0.8 0.99 8.9 0.1 2.7 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|218884000|ref|YP_002428382.1| - 0.08 11.7 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Viral_helicase1 PF01443.13 gi|218884000|ref|YP_002428382.1| - 0.14 11.7 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF1002 PF06207.6 gi|218884000|ref|YP_002428382.1| - 0.15 11.3 0.2 14 4.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) AAA PF00004.24 gi|218884001|ref|YP_002428383.1| - 2.8e-15 56.6 0.0 7.2e-15 55.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|218884001|ref|YP_002428383.1| - 4.4e-14 52.0 0.9 1.3e-07 30.6 0.1 3.4 2 2 2 4 4 4 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|218884001|ref|YP_002428383.1| - 4.6e-10 38.9 0.0 1.6e-07 30.5 0.0 2.2 1 1 1 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|218884001|ref|YP_002428383.1| - 8.8e-08 32.3 0.8 9.8e-07 28.9 0.2 3.0 2 1 0 2 2 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|218884001|ref|YP_002428383.1| - 2.2e-06 27.6 0.0 4.6e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|218884001|ref|YP_002428383.1| - 2.3e-06 27.3 0.0 1.3e-05 24.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|218884001|ref|YP_002428383.1| - 3.3e-06 26.2 0.0 6e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|218884001|ref|YP_002428383.1| - 1.2e-05 26.1 0.1 3.3e-05 24.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|218884001|ref|YP_002428383.1| - 4.4e-05 23.6 0.3 0.00089 19.4 0.1 2.9 2 1 0 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|218884001|ref|YP_002428383.1| - 0.00011 21.7 0.0 0.0002 20.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_33 PF13671.1 gi|218884001|ref|YP_002428383.1| - 0.00015 21.6 0.0 0.00047 20.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|218884001|ref|YP_002428383.1| - 0.00041 19.1 0.1 0.18 10.5 0.0 2.5 2 1 0 2 2 2 2 TIP49 C-terminus AAA_28 PF13521.1 gi|218884001|ref|YP_002428383.1| - 0.00051 20.0 0.0 0.0012 18.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|218884001|ref|YP_002428383.1| - 0.0012 18.4 0.0 0.0027 17.2 0.0 1.6 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.9 gi|218884001|ref|YP_002428383.1| - 0.0018 18.1 0.0 0.0038 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|218884001|ref|YP_002428383.1| - 0.0042 16.1 0.0 0.0092 15.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|218884001|ref|YP_002428383.1| - 0.007 16.6 0.1 0.023 14.9 0.0 2.0 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|218884001|ref|YP_002428383.1| - 0.0097 15.3 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|218884001|ref|YP_002428383.1| - 0.012 15.2 0.6 0.21 11.2 0.0 3.0 3 1 1 4 4 4 0 NACHT domain AAA_19 PF13245.1 gi|218884001|ref|YP_002428383.1| - 0.013 15.2 0.1 0.068 12.9 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_11 PF13086.1 gi|218884001|ref|YP_002428383.1| - 0.014 14.9 0.1 0.036 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|218884001|ref|YP_002428383.1| - 0.014 15.1 0.1 3.6 7.2 0.0 2.4 1 1 1 2 2 2 0 NTPase ABC_tran PF00005.22 gi|218884001|ref|YP_002428383.1| - 0.023 15.0 0.0 0.11 12.7 0.0 2.0 1 1 1 2 2 2 0 ABC transporter RNA_helicase PF00910.17 gi|218884001|ref|YP_002428383.1| - 0.031 14.4 0.0 0.089 12.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|218884001|ref|YP_002428383.1| - 0.039 13.6 0.1 0.37 10.4 0.0 2.3 2 1 1 3 3 3 0 Archaeal ATPase AAA_25 PF13481.1 gi|218884001|ref|YP_002428383.1| - 0.055 12.8 0.1 0.19 11.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|218884001|ref|YP_002428383.1| - 0.06 12.1 0.0 0.3 9.9 0.0 2.0 1 1 1 2 2 2 0 NB-ARC domain DUF258 PF03193.11 gi|218884001|ref|YP_002428383.1| - 0.062 12.4 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|218884001|ref|YP_002428383.1| - 0.063 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|218884001|ref|YP_002428383.1| - 0.13 12.5 0.0 0.55 10.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|218884001|ref|YP_002428383.1| - 0.13 12.2 0.1 0.64 10.0 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain SMC_N PF02463.14 gi|218884001|ref|YP_002428383.1| - 0.18 11.0 0.0 0.5 9.5 0.0 1.5 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain ThiI PF02568.9 gi|218884002|ref|YP_002428384.1| - 4.8e-52 176.3 0.0 8.6e-52 175.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|218884002|ref|YP_002428384.1| - 5.9e-21 74.8 2.4 5.9e-21 74.8 1.6 1.6 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.15 gi|218884002|ref|YP_002428384.1| - 8.1e-10 39.0 0.0 3.6e-09 36.9 0.0 2.1 1 1 0 1 1 1 1 Rhodanese-like domain QueC PF06508.8 gi|218884002|ref|YP_002428384.1| - 3.7e-06 26.3 0.0 0.0003 20.1 0.0 2.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|218884002|ref|YP_002428384.1| - 0.00013 21.4 0.5 0.00074 18.9 0.0 2.4 3 0 0 3 3 3 1 ATP-binding region ATP_bind_3 PF01171.15 gi|218884002|ref|YP_002428384.1| - 0.0074 15.8 0.0 0.026 14.0 0.0 1.9 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|218884002|ref|YP_002428384.1| - 0.051 12.1 0.0 0.08 11.4 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|218884002|ref|YP_002428384.1| - 0.08 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Asparagine synthase DUF432 PF04254.8 gi|218884003|ref|YP_002428385.1| - 3.9e-24 84.9 0.1 5.6e-24 84.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) MS_channel PF00924.13 gi|218884004|ref|YP_002428386.1| - 4.2e-48 163.4 1.2 4.2e-48 163.4 0.8 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|218884004|ref|YP_002428386.1| - 1.8e-05 24.3 2.9 1.8e-05 24.3 2.0 2.3 2 0 0 2 2 2 1 Conserved TM helix STT3 PF02516.9 gi|218884004|ref|YP_002428386.1| - 0.42 9.5 14.7 0.55 9.1 10.2 1.1 1 0 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit IZUMO PF15005.1 gi|218884005|ref|YP_002428387.1| - 0.042 13.8 0.8 0.09 12.8 0.5 1.5 1 0 0 1 1 1 0 Izumo sperm-egg fusion HTH_37 PF13744.1 gi|218884005|ref|YP_002428387.1| - 0.043 13.6 0.8 0.084 12.6 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain PIGA PF08288.7 gi|218884006|ref|YP_002428388.1| - 0.076 13.3 2.0 0.14 12.5 0.2 2.1 2 0 0 2 2 2 0 PIGA (GPI anchor biosynthesis) DDRGK PF09756.4 gi|218884006|ref|YP_002428388.1| - 0.14 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain DUF1030 PF06270.6 gi|218884006|ref|YP_002428388.1| - 5.9 6.4 9.4 2.6 7.6 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF1030) T2SE PF00437.15 gi|218884009|ref|YP_002428391.1| - 2.3e-36 125.0 0.0 3.5e-36 124.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|218884009|ref|YP_002428391.1| - 9.4e-05 21.9 0.0 0.00015 21.3 0.0 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|218884009|ref|YP_002428391.1| - 0.00021 20.9 0.1 0.00056 19.6 0.1 1.8 1 1 0 1 1 1 1 Part of AAA domain cobW PF02492.14 gi|218884009|ref|YP_002428391.1| - 0.00024 20.6 0.0 0.00059 19.3 0.0 1.7 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|218884009|ref|YP_002428391.1| - 0.00038 20.5 0.0 0.0013 18.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|218884009|ref|YP_002428391.1| - 0.00039 20.1 0.0 0.00078 19.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|218884009|ref|YP_002428391.1| - 0.0023 18.2 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.1 gi|218884009|ref|YP_002428391.1| - 0.0026 17.7 0.0 0.0054 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|218884009|ref|YP_002428391.1| - 0.0026 16.8 0.0 0.0042 16.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|218884009|ref|YP_002428391.1| - 0.0039 16.6 0.0 0.0095 15.4 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|218884009|ref|YP_002428391.1| - 0.0046 17.7 0.0 0.016 16.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|218884009|ref|YP_002428391.1| - 0.006 16.2 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|218884009|ref|YP_002428391.1| - 0.0061 15.9 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|218884009|ref|YP_002428391.1| - 0.0093 16.1 0.0 0.02 15.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|218884009|ref|YP_002428391.1| - 0.012 15.9 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|218884009|ref|YP_002428391.1| - 0.013 15.4 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|218884009|ref|YP_002428391.1| - 0.021 14.6 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|218884009|ref|YP_002428391.1| - 0.021 14.5 0.0 0.066 12.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|218884009|ref|YP_002428391.1| - 0.027 14.8 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|218884009|ref|YP_002428391.1| - 0.029 14.0 0.0 0.088 12.5 0.0 1.9 1 0 0 1 1 1 0 NTPase Viral_helicase1 PF01443.13 gi|218884009|ref|YP_002428391.1| - 0.031 13.7 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|218884009|ref|YP_002428391.1| - 0.038 13.5 0.0 0.079 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|218884009|ref|YP_002428391.1| - 0.039 13.4 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|218884009|ref|YP_002428391.1| - 0.04 13.5 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|218884009|ref|YP_002428391.1| - 0.06 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|218884009|ref|YP_002428391.1| - 0.067 11.7 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|218884009|ref|YP_002428391.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_21 PF13304.1 gi|218884009|ref|YP_002428391.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|218884009|ref|YP_002428391.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|218884009|ref|YP_002428391.1| - 0.15 11.3 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein DUF1628 PF07790.6 gi|218884010|ref|YP_002428392.1| - 0.025 15.3 6.9 0.037 14.7 4.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) PITH PF06201.8 gi|218884010|ref|YP_002428392.1| - 0.032 13.9 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 PITH domain Arch_flagellin PF01917.11 gi|218884010|ref|YP_002428392.1| - 9.5 5.7 9.3 16 5.0 6.1 1.8 1 1 0 1 1 1 0 Archaebacterial flagellin PKD PF00801.15 gi|218884011|ref|YP_002428393.1| - 0.039 13.6 0.2 0.083 12.6 0.1 1.5 1 0 0 1 1 1 0 PKD domain A2M_N PF01835.14 gi|218884011|ref|YP_002428393.1| - 0.095 12.9 0.2 5.9 7.2 0.0 2.4 2 0 0 2 2 2 0 MG2 domain DUF996 PF06195.8 gi|218884012|ref|YP_002428394.1| - 5e-26 91.3 22.8 5e-26 91.3 15.8 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF996) DUF1761 PF08570.5 gi|218884012|ref|YP_002428394.1| - 0.019 14.9 16.7 0.07 13.1 6.5 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) MscS_TM PF12794.2 gi|218884012|ref|YP_002428394.1| - 0.6 8.6 15.2 0.051 12.1 6.4 2.0 1 1 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF1772 PF08592.6 gi|218884012|ref|YP_002428394.1| - 1.4 8.6 12.6 2.2 8.0 0.5 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF1772) TMEM210 PF15195.1 gi|218884012|ref|YP_002428394.1| - 2 8.5 4.2 0.81 9.8 0.3 2.2 2 0 0 2 2 2 0 TMEM210 family DUF2569 PF10754.4 gi|218884012|ref|YP_002428394.1| - 6.9 6.8 21.5 2.6 8.2 8.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2569) AAA_10 PF12846.2 gi|218884015|ref|YP_002428397.1| - 1.3e-22 80.5 0.0 1.9e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|218884015|ref|YP_002428397.1| - 2.8e-14 53.4 0.0 5e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|218884015|ref|YP_002428397.1| - 5.5e-12 45.0 0.0 4e-05 22.4 0.0 2.4 3 0 0 3 3 3 2 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.9 gi|218884015|ref|YP_002428397.1| - 2.4e-06 26.4 0.0 0.0025 16.4 0.0 2.3 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer AAA_16 PF13191.1 gi|218884015|ref|YP_002428397.1| - 3.6e-06 27.0 0.1 0.1 12.5 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain TraG-D_C PF12696.2 gi|218884015|ref|YP_002428397.1| - 6.1e-06 26.1 0.0 1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.1 gi|218884015|ref|YP_002428397.1| - 1.3e-05 25.3 0.0 0.0032 17.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|218884015|ref|YP_002428397.1| - 0.00061 19.3 0.0 0.0067 15.9 0.0 2.4 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|218884015|ref|YP_002428397.1| - 0.0017 17.9 0.0 0.007 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|218884015|ref|YP_002428397.1| - 0.003 17.0 0.0 0.011 15.2 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|218884015|ref|YP_002428397.1| - 0.0047 15.8 0.0 0.0083 15.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF853 PF05872.7 gi|218884015|ref|YP_002428397.1| - 0.0063 14.9 0.0 0.01 14.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) MobB PF03205.9 gi|218884015|ref|YP_002428397.1| - 0.0068 16.1 0.2 0.019 14.6 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|218884015|ref|YP_002428397.1| - 0.012 15.8 0.0 0.032 14.5 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|218884015|ref|YP_002428397.1| - 0.019 15.4 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_19 PF13245.1 gi|218884015|ref|YP_002428397.1| - 0.026 14.2 0.0 0.09 12.5 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_17 PF13207.1 gi|218884015|ref|YP_002428397.1| - 0.048 14.4 0.0 0.11 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|218884015|ref|YP_002428397.1| - 0.087 12.4 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|218884015|ref|YP_002428397.1| - 0.1 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Dynamin_N PF00350.18 gi|218884015|ref|YP_002428397.1| - 0.16 11.8 0.1 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_18 PF13238.1 gi|218884015|ref|YP_002428397.1| - 0.18 12.1 0.0 0.32 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4149 PF13664.1 gi|218884016|ref|YP_002428398.1| - 0.071 13.1 0.2 0.081 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) DUF1129 PF06570.6 gi|218884016|ref|YP_002428398.1| - 0.16 11.2 0.6 0.2 10.9 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Tetraspannin PF00335.15 gi|218884016|ref|YP_002428398.1| - 0.26 10.5 3.6 0.31 10.2 2.5 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF4282 PF14110.1 gi|218884016|ref|YP_002428398.1| - 0.51 10.5 5.7 0.78 9.9 3.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) AA_permease PF00324.16 gi|218884016|ref|YP_002428398.1| - 0.61 8.3 5.8 0.83 7.9 4.0 1.4 1 1 0 1 1 1 0 Amino acid permease AAA_10 PF12846.2 gi|218884017|ref|YP_002428399.1| - 1.1e-32 113.7 0.0 1.9e-22 80.1 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|218884017|ref|YP_002428399.1| - 9.3e-06 25.6 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|218884017|ref|YP_002428399.1| - 8.1e-05 22.7 0.0 0.12 12.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.13 gi|218884017|ref|YP_002428399.1| - 0.00045 19.7 0.0 0.43 10.0 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|218884017|ref|YP_002428399.1| - 0.00079 18.1 0.0 0.28 9.7 0.0 2.4 2 1 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|218884017|ref|YP_002428399.1| - 0.0064 16.2 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|218884017|ref|YP_002428399.1| - 0.0069 16.3 0.2 0.046 13.7 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF853 PF05872.7 gi|218884017|ref|YP_002428399.1| - 0.037 12.3 0.0 0.13 10.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) ArgK PF03308.11 gi|218884017|ref|YP_002428399.1| - 0.045 12.5 0.0 0.1 11.3 0.0 1.6 1 0 0 1 1 1 0 ArgK protein Fer4_NifH PF00142.13 gi|218884017|ref|YP_002428399.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF3987 PF13148.1 gi|218884017|ref|YP_002428399.1| - 0.16 10.4 0.0 0.27 9.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) RAP PF08373.5 gi|218884018|ref|YP_002428400.1| - 0.053 13.3 0.2 0.081 12.7 0.1 1.2 1 0 0 1 1 1 0 RAP domain PrgI PF12666.2 gi|218884018|ref|YP_002428400.1| - 0.1 12.7 0.3 0.16 12.1 0.2 1.3 1 0 0 1 1 1 0 PrgI family protein Raffinose_syn PF05691.7 gi|218884021|ref|YP_002428403.1| - 1.5e-40 138.5 0.2 2.5e-23 81.5 0.2 3.7 1 1 0 2 2 2 2 Raffinose synthase or seed imbibition protein Sip1 Glyco_hydro_31 PF01055.21 gi|218884021|ref|YP_002428403.1| - 4.1e-05 22.5 0.0 5.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Melibiase PF02065.13 gi|218884021|ref|YP_002428403.1| - 6.9e-05 21.7 0.1 0.0001 21.1 0.0 1.2 1 0 0 1 1 1 1 Melibiase MFS_1 PF07690.11 gi|218884022|ref|YP_002428404.1| - 8.9e-50 169.3 46.9 1.1e-40 139.4 24.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|218884022|ref|YP_002428404.1| - 7.8e-18 64.2 22.1 8.4e-13 47.6 5.7 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter ATG22 PF11700.3 gi|218884022|ref|YP_002428404.1| - 4.8e-16 58.3 24.6 6.7e-11 41.3 5.4 2.2 2 0 0 2 2 2 2 Vacuole effluxer Atg22 like FmdA_AmdA PF03069.10 gi|218884023|ref|YP_002428405.1| - 1.7e-72 244.1 0.6 1e-35 123.1 0.0 2.1 1 1 1 2 2 2 2 Acetamidase/Formamidase family Thi4 PF01946.12 gi|218884024|ref|YP_002428406.1| - 2.1e-81 272.3 0.3 2.5e-81 272.1 0.2 1.0 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.19 gi|218884024|ref|YP_002428406.1| - 4.3e-13 48.8 3.3 4.3e-06 25.8 0.4 3.1 2 1 1 3 3 3 3 FAD binding domain DAO PF01266.19 gi|218884024|ref|YP_002428406.1| - 8e-13 48.0 3.1 7.5e-08 31.6 0.9 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|218884024|ref|YP_002428406.1| - 5e-09 35.7 0.2 7.1e-09 35.2 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|218884024|ref|YP_002428406.1| - 1.5e-08 34.5 1.0 3.6e-08 33.3 0.7 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|218884024|ref|YP_002428406.1| - 1.1e-06 28.7 0.5 1.6e-06 28.1 0.3 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|218884024|ref|YP_002428406.1| - 1.4e-06 27.6 0.3 1.6e-06 27.3 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|218884024|ref|YP_002428406.1| - 1.8e-05 23.3 1.3 3.2e-05 22.5 0.9 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|218884024|ref|YP_002428406.1| - 4.2e-05 23.6 0.2 0.00014 22.0 0.2 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|218884024|ref|YP_002428406.1| - 0.0005 20.4 0.4 0.0017 18.7 0.3 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|218884024|ref|YP_002428406.1| - 0.0019 17.3 0.1 0.0031 16.6 0.1 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|218884024|ref|YP_002428406.1| - 0.0019 17.1 0.9 0.0037 16.2 0.6 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|218884024|ref|YP_002428406.1| - 0.0053 16.8 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.7 gi|218884024|ref|YP_002428406.1| - 0.021 13.7 0.1 0.064 12.1 0.1 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein ThiF PF00899.16 gi|218884024|ref|YP_002428406.1| - 0.028 14.2 0.1 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 ThiF family K_oxygenase PF13434.1 gi|218884024|ref|YP_002428406.1| - 0.07 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|218884024|ref|YP_002428406.1| - 0.099 11.2 0.6 0.14 10.7 0.3 1.4 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|218884024|ref|YP_002428406.1| - 0.1 12.3 0.2 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding Phos_pyr_kin PF08543.7 gi|218884025|ref|YP_002428407.1| - 3.2e-94 314.7 0.3 5.1e-94 314.0 0.2 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|218884025|ref|YP_002428407.1| - 5.7e-53 178.7 3.3 5.7e-53 178.7 2.3 1.7 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|218884025|ref|YP_002428407.1| - 4.2e-09 35.9 0.3 8.4e-09 34.9 0.2 1.5 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Nif11 PF07862.6 gi|218884025|ref|YP_002428407.1| - 0.035 14.0 0.1 0.72 9.8 0.0 2.6 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function PBP_like PF12727.2 gi|218884026|ref|YP_002428408.1| - 4.6e-53 179.0 0.0 9.4e-53 178.0 0.0 1.5 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|218884026|ref|YP_002428408.1| - 5.4e-48 162.4 0.1 1e-47 161.4 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|218884026|ref|YP_002428408.1| - 6.7e-29 100.1 0.0 3.8e-28 97.6 0.0 2.2 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|218884026|ref|YP_002428408.1| - 2.3e-12 46.6 0.0 7.4e-12 45.0 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|218884026|ref|YP_002428408.1| - 0.039 13.5 0.0 0.098 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DEAD PF00270.24 gi|218884027|ref|YP_002428409.1| - 9.4e-27 93.5 0.0 1.6e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|218884027|ref|YP_002428409.1| - 2.8e-09 36.9 1.0 1.1e-08 35.0 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|218884027|ref|YP_002428409.1| - 1e-08 34.9 0.1 2.3e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|218884027|ref|YP_002428409.1| - 0.0004 20.2 0.0 0.0012 18.7 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|218884027|ref|YP_002428409.1| - 0.0011 18.8 0.0 0.0037 17.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif Sec63 PF02889.11 gi|218884027|ref|YP_002428409.1| - 0.0023 17.2 0.0 0.0077 15.4 0.0 1.8 1 1 0 1 1 1 1 Sec63 Brl domain UPRTase PF14681.1 gi|218884028|ref|YP_002428410.1| - 1.4e-35 122.4 0.0 1.6e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|218884028|ref|YP_002428410.1| - 8.1e-11 41.7 0.0 1.7e-10 40.7 0.0 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|218884028|ref|YP_002428410.1| - 0.028 13.7 0.0 0.054 12.7 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase CbiA PF01656.18 gi|218884029|ref|YP_002428411.1| - 4e-16 59.0 0.0 4.9e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|218884029|ref|YP_002428411.1| - 3.2e-15 55.7 0.0 6.4e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|218884029|ref|YP_002428411.1| - 4.1e-07 30.0 0.0 7e-07 29.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|218884029|ref|YP_002428411.1| - 0.0036 16.4 0.1 0.015 14.3 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase HypA PF01155.14 gi|218884030|ref|YP_002428412.1| - 6.1e-16 58.1 0.0 7.9e-16 57.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF2387 PF09526.5 gi|218884030|ref|YP_002428412.1| - 0.0005 19.9 0.0 0.45 10.4 0.0 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.13 gi|218884030|ref|YP_002428412.1| - 0.0029 17.1 1.6 0.81 9.3 0.1 2.3 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|218884030|ref|YP_002428412.1| - 0.0039 16.7 0.3 3.1 7.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|218884030|ref|YP_002428412.1| - 0.0042 16.7 0.3 3.4 7.4 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|218884030|ref|YP_002428412.1| - 0.0078 16.1 0.2 0.83 9.6 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|218884030|ref|YP_002428412.1| - 0.009 15.8 0.1 0.22 11.3 0.0 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|218884030|ref|YP_002428412.1| - 0.017 14.9 2.7 2.9 7.7 0.1 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|218884030|ref|YP_002428412.1| - 0.017 14.5 0.1 2.8 7.4 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_S27e PF01667.12 gi|218884030|ref|YP_002428412.1| - 0.02 14.4 0.0 3.3 7.3 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.1 gi|218884030|ref|YP_002428412.1| - 0.022 14.2 1.0 1.2 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|218884030|ref|YP_002428412.1| - 0.03 13.8 0.6 0.091 12.2 0.4 1.7 1 1 1 2 2 2 0 CSL zinc finger UPF0547 PF10571.4 gi|218884030|ref|YP_002428412.1| - 0.042 13.5 1.5 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|218884030|ref|YP_002428412.1| - 0.05 12.9 1.1 0.42 9.9 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|218884030|ref|YP_002428412.1| - 0.066 12.4 1.3 0.77 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|218884030|ref|YP_002428412.1| - 0.084 13.1 0.2 13 6.1 0.1 2.5 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.1 gi|218884030|ref|YP_002428412.1| - 0.094 12.7 0.1 0.094 12.7 0.0 2.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|218884030|ref|YP_002428412.1| - 0.13 12.5 1.2 2.5 8.4 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar CpXC PF14353.1 gi|218884030|ref|YP_002428412.1| - 0.14 12.1 1.1 0.62 10.0 0.3 2.2 2 1 1 3 3 2 0 CpXC protein RNA_POL_M_15KD PF02150.11 gi|218884030|ref|YP_002428412.1| - 0.15 11.8 2.2 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-H2C2_2 PF13465.1 gi|218884030|ref|YP_002428412.1| - 0.25 11.7 1.7 12 6.3 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DUF2082 PF09855.4 gi|218884030|ref|YP_002428412.1| - 1.1 9.2 2.9 1.8 8.4 0.0 2.4 3 0 0 3 3 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C2HC_2 PF13913.1 gi|218884030|ref|YP_002428412.1| - 1.1 9.0 5.4 1.6 8.4 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HMG-CoA_red PF00368.13 gi|218884031|ref|YP_002428413.1| - 4.8e-81 272.2 5.4 6.6e-81 271.8 3.8 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CN_hydrolase PF00795.17 gi|218884032|ref|YP_002428414.1| - 3e-20 72.3 0.0 3.9e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DpnD-PcfM PF14207.1 gi|218884032|ref|YP_002428414.1| - 0.061 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 DpnD/PcfM-like protein ATP_bind_3 PF01171.15 gi|218884033|ref|YP_002428415.1| - 3.1e-20 72.4 0.0 5.7e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|218884033|ref|YP_002428415.1| - 5.9e-05 22.9 0.0 0.0001 22.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|218884033|ref|YP_002428415.1| - 0.0012 18.2 1.3 0.0012 18.2 0.9 3.1 3 0 0 3 3 3 1 RecR protein NAD_synthase PF02540.12 gi|218884033|ref|YP_002428415.1| - 0.018 13.9 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 NAD synthase QueC PF06508.8 gi|218884033|ref|YP_002428415.1| - 0.074 12.3 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Acetyltransf_4 PF13420.1 gi|218884034|ref|YP_002428416.1| - 0.099 12.5 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ATP-grasp_5 PF13549.1 gi|218884036|ref|YP_002428418.1| - 1.6e-76 256.4 0.1 1.9e-76 256.1 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|218884036|ref|YP_002428418.1| - 0.00021 20.7 0.1 0.00025 20.5 0.0 1.3 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|218884036|ref|YP_002428418.1| - 0.0065 16.2 0.0 0.008 15.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|218884036|ref|YP_002428418.1| - 0.04 13.2 0.1 0.089 12.0 0.0 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TPP_enzyme_C PF02775.16 gi|218884037|ref|YP_002428419.1| - 4.7e-28 97.7 0.0 9e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|218884037|ref|YP_002428419.1| - 7.8e-19 68.1 0.0 1.2e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|218884037|ref|YP_002428419.1| - 2.2e-10 39.6 12.4 1.6e-06 27.4 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|218884037|ref|YP_002428419.1| - 7.8e-08 31.8 13.4 0.00065 19.4 2.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218884037|ref|YP_002428419.1| - 2.3e-06 27.2 10.7 4.2e-06 26.4 7.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|218884037|ref|YP_002428419.1| - 5.3e-06 26.0 1.1 6.8e-05 22.4 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|218884037|ref|YP_002428419.1| - 7.1e-06 26.3 9.3 0.0067 16.7 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218884037|ref|YP_002428419.1| - 0.00015 21.4 18.1 0.0094 15.7 1.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218884037|ref|YP_002428419.1| - 0.00024 20.9 11.9 0.00077 19.2 8.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218884037|ref|YP_002428419.1| - 0.00038 20.5 13.0 0.073 13.4 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218884037|ref|YP_002428419.1| - 0.0012 19.0 12.6 0.0033 17.6 8.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Transketolase_C PF02780.15 gi|218884037|ref|YP_002428419.1| - 0.0074 16.2 0.0 0.041 13.8 0.0 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.1 gi|218884037|ref|YP_002428419.1| - 0.0091 14.9 0.1 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Fer4_8 PF13183.1 gi|218884037|ref|YP_002428419.1| - 0.016 15.2 9.7 0.035 14.1 6.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218884037|ref|YP_002428419.1| - 0.3 11.6 12.9 1.4 9.5 1.7 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|218884037|ref|YP_002428419.1| - 0.4 11.4 7.7 1 10.1 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|218884037|ref|YP_002428419.1| - 1.8 8.9 13.3 2.5 8.4 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|218884037|ref|YP_002428419.1| - 9.4 6.7 14.8 13 6.3 2.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.13 gi|218884038|ref|YP_002428420.1| - 1.4e-31 109.7 0.2 1.6e-31 109.5 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Flavodoxin_3 PF12641.2 gi|218884039|ref|YP_002428421.1| - 1.3e-07 31.2 0.0 7.1e-05 22.2 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|218884039|ref|YP_002428421.1| - 4.4e-07 29.9 0.0 5.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain CbiG_N PF11760.3 gi|218884039|ref|YP_002428421.1| - 0.02 14.5 0.1 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal Flavodoxin_1 PF00258.20 gi|218884039|ref|YP_002428421.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Flavodoxin Amidohydro_3 PF07969.6 gi|218884041|ref|YP_002428423.1| - 1.1e-96 324.5 0.0 1.2e-96 324.3 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|218884041|ref|YP_002428423.1| - 7.6e-10 38.9 0.7 6e-06 26.1 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|218884041|ref|YP_002428423.1| - 1.5e-07 31.1 0.0 4e-07 29.7 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|218884041|ref|YP_002428423.1| - 5.6e-05 23.3 0.0 0.21 11.5 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase Aminotran_3 PF00202.16 gi|218884043|ref|YP_002428425.1| - 4.7e-10 38.8 0.0 5.1e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III ThiS PF02597.15 gi|218884045|ref|YP_002428427.1| - 1.8e-09 37.9 0.2 1.9e-09 37.8 0.1 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|218884045|ref|YP_002428427.1| - 4.9e-05 23.0 0.2 9.4e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.1 gi|218884045|ref|YP_002428427.1| - 0.039 13.4 0.1 0.078 12.5 0.0 1.5 1 1 0 1 1 1 0 Mut7-C ubiquitin DUF4404 PF14357.1 gi|218884045|ref|YP_002428427.1| - 0.08 13.3 0.1 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Fer2_2 PF01799.15 gi|218884046|ref|YP_002428428.1| - 1.1e-29 102.1 0.2 1.9e-29 101.3 0.1 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|218884046|ref|YP_002428428.1| - 2.2e-08 33.7 0.6 2.2e-08 33.7 0.4 2.1 2 2 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|218884046|ref|YP_002428428.1| - 7.6e-05 22.4 0.5 7.6e-05 22.4 0.3 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|218884046|ref|YP_002428428.1| - 0.026 14.0 3.8 0.026 14.0 2.6 1.8 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_4 PF13510.1 gi|218884046|ref|YP_002428428.1| - 0.036 13.8 3.4 0.55 10.0 2.4 2.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Tricorn_PDZ PF14685.1 gi|218884046|ref|YP_002428428.1| - 0.063 13.0 0.2 0.7 9.7 0.0 2.4 2 1 1 3 3 3 0 Tricorn protease PDZ domain FAD_binding_5 PF00941.16 gi|218884047|ref|YP_002428429.1| - 2.4e-53 180.0 0.1 3.3e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|218884047|ref|YP_002428429.1| - 6.5e-24 83.8 0.4 1e-23 83.1 0.3 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|218884048|ref|YP_002428430.1| - 1.1e-116 390.3 0.0 1.4e-116 389.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|218884048|ref|YP_002428430.1| - 3.6e-20 72.1 0.0 6.9e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|218884049|ref|YP_002428431.1| - 1.3e-21 76.2 0.0 2.1e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|218884049|ref|YP_002428431.1| - 8.7e-07 28.6 1.9 1.4e-06 27.9 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|218884049|ref|YP_002428431.1| - 2.1e-05 24.3 0.0 3.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|218884049|ref|YP_002428431.1| - 0.0013 18.4 0.6 0.018 14.8 0.5 2.5 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DUF3133 PF11331.3 gi|218884049|ref|YP_002428431.1| - 0.12 11.9 2.2 1.3 8.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) FAD_binding_5 PF00941.16 gi|218884050|ref|YP_002428432.1| - 3.5e-53 179.5 0.0 4.8e-53 179.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|218884050|ref|YP_002428432.1| - 7.6e-29 99.6 0.1 1.2e-28 98.9 0.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|218884051|ref|YP_002428433.1| - 3.8e-149 497.4 0.0 4.7e-149 497.2 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|218884051|ref|YP_002428433.1| - 4.7e-20 71.7 0.0 1.2e-19 70.4 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amidohydro_4 PF13147.1 gi|218884052|ref|YP_002428434.1| - 1.4e-29 104.0 0.7 1.7e-29 103.7 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|218884052|ref|YP_002428434.1| - 1.3e-22 80.8 0.0 2.9e-22 79.7 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|218884052|ref|YP_002428434.1| - 1.3e-13 50.5 1.3 3.7e-13 49.0 0.9 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|218884052|ref|YP_002428434.1| - 6.9e-05 22.2 0.1 0.06 12.5 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase family OTCace_N PF02729.16 gi|218884053|ref|YP_002428435.1| - 1.3e-41 141.6 0.0 1.9e-41 141.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|218884053|ref|YP_002428435.1| - 6.2e-32 110.6 0.0 1.2e-31 109.6 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Sigma70_r4 PF04545.11 gi|218884055|ref|YP_002428437.1| - 1.8e-10 39.9 2.1 3.6e-10 39.0 1.4 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|218884055|ref|YP_002428437.1| - 2.1e-10 39.7 0.5 3.9e-10 38.8 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|218884055|ref|YP_002428437.1| - 1.4e-07 30.9 0.3 2.7e-07 30.0 0.2 1.6 1 1 0 1 1 1 1 Homeodomain-like domain TFX_C PF14601.1 gi|218884055|ref|YP_002428437.1| - 1.4e-07 31.1 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term HTH_38 PF13936.1 gi|218884055|ref|YP_002428437.1| - 6e-07 28.9 0.3 1.8e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|218884055|ref|YP_002428437.1| - 9.8e-07 28.5 0.3 2.1e-06 27.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|218884055|ref|YP_002428437.1| - 3.6e-06 26.3 0.7 6.8e-06 25.4 0.1 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|218884055|ref|YP_002428437.1| - 3.1e-05 23.9 0.4 0.00023 21.1 0.3 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|218884055|ref|YP_002428437.1| - 6e-05 22.9 0.2 0.00013 21.8 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|218884055|ref|YP_002428437.1| - 0.00011 22.2 0.1 0.0002 21.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|218884055|ref|YP_002428437.1| - 0.00032 20.4 0.0 0.00057 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|218884055|ref|YP_002428437.1| - 0.00085 18.9 0.0 0.0025 17.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.7 gi|218884055|ref|YP_002428437.1| - 0.00087 18.8 1.9 0.082 12.4 0.1 3.2 3 1 0 3 3 3 1 HTH DNA binding domain HTH_7 PF02796.10 gi|218884055|ref|YP_002428437.1| - 0.0013 18.5 0.9 0.0031 17.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_24 PF13412.1 gi|218884055|ref|YP_002428437.1| - 0.0015 17.9 0.0 0.0037 16.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|218884055|ref|YP_002428437.1| - 0.0015 18.2 0.0 0.0035 17.1 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|218884055|ref|YP_002428437.1| - 0.0016 17.9 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease HTH_17 PF12728.2 gi|218884055|ref|YP_002428437.1| - 0.0022 18.2 0.1 0.0042 17.3 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|218884055|ref|YP_002428437.1| - 0.0026 17.3 0.1 0.0061 16.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|218884055|ref|YP_002428437.1| - 0.0038 16.8 0.3 0.0099 15.5 0.2 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|218884055|ref|YP_002428437.1| - 0.0096 16.0 0.2 0.026 14.6 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn helix HTH_8 PF02954.14 gi|218884055|ref|YP_002428437.1| - 0.01 15.3 1.1 0.033 13.7 0.1 2.4 2 1 0 2 2 2 0 Bacterial regulatory protein, Fis family MarR PF01047.17 gi|218884055|ref|YP_002428437.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF134 PF02001.11 gi|218884055|ref|YP_002428437.1| - 0.032 14.1 0.1 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_IclR PF09339.5 gi|218884055|ref|YP_002428437.1| - 0.052 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain UPF0122 PF04297.9 gi|218884055|ref|YP_002428437.1| - 0.065 13.2 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_ECF PF07638.6 gi|218884055|ref|YP_002428437.1| - 0.082 12.5 0.1 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_26 PF13443.1 gi|218884055|ref|YP_002428437.1| - 0.11 12.7 0.2 0.52 10.5 0.1 1.9 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain NUMOD1 PF07453.8 gi|218884055|ref|YP_002428437.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain PALP PF00291.20 gi|218884056|ref|YP_002428438.1| - 1.2e-40 139.7 0.0 1.4e-40 139.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AA_permease_2 PF13520.1 gi|218884057|ref|YP_002428439.1| - 6.8e-16 57.8 68.4 1.5e-15 56.6 47.5 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|218884057|ref|YP_002428439.1| - 2.2e-10 39.5 59.8 6.1e-09 34.7 41.5 3.0 1 1 0 1 1 1 1 Amino acid permease DUF357 PF04010.8 gi|218884059|ref|YP_002428441.1| - 1.4e-18 66.3 0.6 2.7e-18 65.4 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|218884059|ref|YP_002428441.1| - 5.1e-09 36.3 0.0 9.4e-09 35.5 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase FMN_red PF03358.10 gi|218884060|ref|YP_002428442.1| - 4.9e-27 94.2 0.0 7.6e-27 93.6 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|218884060|ref|YP_002428442.1| - 1.2e-12 47.8 0.0 1.9e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NUDIX PF00293.23 gi|218884061|ref|YP_002428443.1| - 7.1e-23 80.7 0.0 9.1e-23 80.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain ECF-ribofla_trS PF07155.7 gi|218884062|ref|YP_002428444.1| - 2.5e-28 98.9 25.1 3.9e-21 75.5 8.2 2.0 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component PDR_assoc PF08370.6 gi|218884062|ref|YP_002428444.1| - 0.14 11.7 1.7 0.38 10.2 1.2 1.7 1 0 0 1 1 1 0 Plant PDR ABC transporter associated Ldr_toxin PF13940.1 gi|218884062|ref|YP_002428444.1| - 2.9 7.7 5.2 10 5.9 0.1 2.8 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system CoatB PF10389.4 gi|218884062|ref|YP_002428444.1| - 3.3 7.6 7.1 1.1 9.1 0.2 2.5 2 0 0 2 2 2 0 Bacteriophage coat protein B ABC_tran PF00005.22 gi|218884063|ref|YP_002428445.1| - 3.2e-41 140.8 0.0 1.8e-19 70.4 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|218884063|ref|YP_002428445.1| - 5.2e-30 105.3 1.3 8.1e-10 39.1 0.0 4.2 3 1 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|218884063|ref|YP_002428445.1| - 8.7e-12 44.7 2.4 0.043 13.0 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|218884063|ref|YP_002428445.1| - 1e-10 42.2 1.1 6.5e-05 23.3 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|218884063|ref|YP_002428445.1| - 3.9e-10 39.0 4.2 0.0002 20.8 0.3 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|218884063|ref|YP_002428445.1| - 1.1e-08 35.9 5.5 5.2e-05 24.0 1.0 2.9 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|218884063|ref|YP_002428445.1| - 1.6e-08 34.0 0.0 0.17 10.9 0.0 4.1 4 0 0 4 4 4 2 AAA ATPase domain AAA_16 PF13191.1 gi|218884063|ref|YP_002428445.1| - 6.3e-07 29.5 3.0 0.00012 22.1 0.0 2.7 3 1 0 3 3 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|218884063|ref|YP_002428445.1| - 1.3e-06 27.9 2.2 0.022 14.1 0.2 3.3 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|218884063|ref|YP_002428445.1| - 1.9e-06 28.0 6.4 0.0028 17.8 0.2 3.7 3 1 0 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|218884063|ref|YP_002428445.1| - 3.1e-06 26.8 6.6 0.086 12.2 0.6 3.3 3 0 0 3 3 3 3 AAA-like domain AAA_30 PF13604.1 gi|218884063|ref|YP_002428445.1| - 4.4e-06 26.3 3.4 0.024 14.2 0.1 3.4 4 0 0 4 4 3 2 AAA domain T2SE PF00437.15 gi|218884063|ref|YP_002428445.1| - 7.8e-06 24.9 0.8 0.0034 16.3 0.2 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|218884063|ref|YP_002428445.1| - 1.1e-05 25.1 7.4 0.032 13.9 0.4 3.7 4 0 0 4 4 4 2 NTPase DUF258 PF03193.11 gi|218884063|ref|YP_002428445.1| - 2.2e-05 23.6 0.7 0.062 12.4 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 ArgK PF03308.11 gi|218884063|ref|YP_002428445.1| - 3.9e-05 22.5 1.9 0.036 12.8 0.0 2.3 2 0 0 2 2 2 2 ArgK protein UPF0079 PF02367.12 gi|218884063|ref|YP_002428445.1| - 4.1e-05 23.2 3.2 0.0088 15.6 0.3 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|218884063|ref|YP_002428445.1| - 4.5e-05 23.1 10.0 0.0009 18.9 0.4 3.6 5 0 0 5 5 3 2 Part of AAA domain AAA_33 PF13671.1 gi|218884063|ref|YP_002428445.1| - 8.9e-05 22.3 2.4 0.02 14.7 0.8 3.2 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|218884063|ref|YP_002428445.1| - 0.00012 22.2 5.7 0.037 14.2 1.3 3.6 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|218884063|ref|YP_002428445.1| - 0.00015 21.0 3.1 0.0035 16.5 0.1 2.6 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|218884063|ref|YP_002428445.1| - 0.00019 21.1 6.5 0.017 14.7 0.5 2.9 3 1 0 3 3 3 2 NACHT domain AAA_18 PF13238.1 gi|218884063|ref|YP_002428445.1| - 0.00021 21.6 9.1 0.003 17.8 1.7 3.0 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|218884063|ref|YP_002428445.1| - 0.00022 21.0 1.5 0.08 12.8 0.1 3.0 3 0 0 3 3 3 1 AAA domain SbcCD_C PF13558.1 gi|218884063|ref|YP_002428445.1| - 0.00041 20.2 0.3 0.11 12.4 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|218884063|ref|YP_002428445.1| - 0.00043 20.2 3.6 0.065 13.1 1.1 2.9 3 0 0 3 3 3 1 AAA domain PRK PF00485.13 gi|218884063|ref|YP_002428445.1| - 0.00054 19.5 2.0 0.042 13.4 0.2 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|218884063|ref|YP_002428445.1| - 0.00066 19.8 0.3 0.29 11.3 0.1 2.4 2 0 0 2 2 2 1 RNA helicase MutS_V PF00488.16 gi|218884063|ref|YP_002428445.1| - 0.00077 18.9 0.1 1.4 8.3 0.0 2.4 2 0 0 2 2 2 2 MutS domain V NB-ARC PF00931.17 gi|218884063|ref|YP_002428445.1| - 0.0015 17.4 2.5 0.3 9.9 0.2 2.3 2 0 0 2 2 2 2 NB-ARC domain APS_kinase PF01583.15 gi|218884063|ref|YP_002428445.1| - 0.0016 18.1 2.7 0.036 13.7 0.2 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|218884063|ref|YP_002428445.1| - 0.0016 18.1 1.3 0.37 10.4 0.1 2.8 3 0 0 3 3 3 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|218884063|ref|YP_002428445.1| - 0.0017 17.8 4.0 0.014 14.7 0.1 2.8 4 0 0 4 4 2 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|218884063|ref|YP_002428445.1| - 0.0021 17.7 5.3 0.2 11.3 0.4 3.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|218884063|ref|YP_002428445.1| - 0.0026 16.9 4.8 0.45 9.5 0.3 3.1 3 0 0 3 3 3 1 Zeta toxin MobB PF03205.9 gi|218884063|ref|YP_002428445.1| - 0.012 15.3 6.7 0.072 12.7 0.3 2.6 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|218884063|ref|YP_002428445.1| - 0.024 13.2 2.6 3 6.3 0.3 2.6 3 0 0 3 3 2 0 Predicted ATPase of the ABC class KAP_NTPase PF07693.9 gi|218884063|ref|YP_002428445.1| - 0.026 13.5 0.1 2 7.3 0.0 2.3 2 0 0 2 2 2 0 KAP family P-loop domain Rad17 PF03215.10 gi|218884063|ref|YP_002428445.1| - 0.03 13.0 2.1 0.36 9.4 0.1 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|218884063|ref|YP_002428445.1| - 0.032 14.7 0.4 13 6.2 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein cobW PF02492.14 gi|218884063|ref|YP_002428445.1| - 0.043 13.2 8.7 0.39 10.1 0.9 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.11 gi|218884063|ref|YP_002428445.1| - 0.061 12.5 2.0 0.33 10.1 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein MMR_HSR1 PF01926.18 gi|218884063|ref|YP_002428445.1| - 0.09 12.7 5.5 2.6 8.0 0.2 2.7 3 1 0 3 3 2 0 50S ribosome-binding GTPase TIP49 PF06068.8 gi|218884063|ref|YP_002428445.1| - 0.14 10.8 0.3 0.34 9.5 0.2 1.6 1 0 0 1 1 1 0 TIP49 C-terminus PduV-EutP PF10662.4 gi|218884063|ref|YP_002428445.1| - 0.16 11.4 3.4 0.54 9.7 0.2 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation PIF1 PF05970.9 gi|218884063|ref|YP_002428445.1| - 0.17 10.7 1.6 1.1 8.1 0.1 2.2 2 0 0 2 2 2 0 PIF1-like helicase Sigma54_activat PF00158.21 gi|218884063|ref|YP_002428445.1| - 0.25 10.8 0.6 1.9 7.9 0.1 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain MukB PF04310.7 gi|218884063|ref|YP_002428445.1| - 0.28 10.5 1.1 1.8 7.8 0.0 2.2 2 0 0 2 2 2 0 MukB N-terminal AAA_13 PF13166.1 gi|218884063|ref|YP_002428445.1| - 0.39 9.1 4.0 3.5 5.9 0.3 2.5 3 0 0 3 3 2 0 AAA domain Thymidylate_kin PF02223.12 gi|218884063|ref|YP_002428445.1| - 0.55 9.5 2.8 17 4.7 0.1 2.5 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.1 gi|218884063|ref|YP_002428445.1| - 0.61 9.6 5.6 0.33 10.5 0.3 2.3 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|218884063|ref|YP_002428445.1| - 0.88 9.0 5.0 2 7.9 0.8 2.4 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|218884063|ref|YP_002428445.1| - 1 9.1 3.5 12 5.6 0.3 2.4 2 0 0 2 2 2 0 Dynamin family KaiC PF06745.8 gi|218884063|ref|YP_002428445.1| - 1.3 8.0 3.2 1.1 8.3 0.1 2.1 2 0 0 2 2 2 0 KaiC DUF360 PF04020.8 gi|218884064|ref|YP_002428446.1| - 2.8 8.3 20.0 0.28 11.5 10.5 1.8 2 0 0 2 2 2 0 Membrane protein of unknown function DEAD PF00270.24 gi|218884065|ref|YP_002428447.1| - 1.5e-22 79.8 0.0 2.8e-22 79.0 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|218884065|ref|YP_002428447.1| - 4.1e-14 52.2 0.0 4e-13 49.0 0.0 2.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|218884065|ref|YP_002428447.1| - 5.8e-14 52.4 0.7 1.4e-13 51.1 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) PmbA_TldD PF01523.11 gi|218884066|ref|YP_002428448.1| - 1.7e-66 224.5 0.2 2e-66 224.2 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|218884067|ref|YP_002428449.1| - 1.6e-51 175.3 0.0 1.9e-51 175.0 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase BPL_LplA_LipB PF03099.14 gi|218884068|ref|YP_002428450.1| - 6.5e-17 61.7 0.2 9.8e-17 61.1 0.1 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|218884068|ref|YP_002428450.1| - 3.2e-08 33.1 0.1 7.1e-08 32.0 0.1 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain CxxCxxCC PF03692.10 gi|218884069|ref|YP_002428451.1| - 1.2e-07 32.0 0.0 3.3e-07 30.6 0.0 1.7 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain CTP_transf_2 PF01467.21 gi|218884070|ref|YP_002428452.1| - 2.7e-09 37.2 0.0 6.2e-09 36.0 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|218884070|ref|YP_002428452.1| - 0.038 13.0 0.0 0.45 9.4 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Na_sulph_symp PF00939.14 gi|218884071|ref|YP_002428453.1| - 3.3e-34 118.5 13.2 3.6e-34 118.4 9.1 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|218884071|ref|YP_002428453.1| - 0.00027 19.6 24.1 0.0025 16.4 16.7 2.3 1 1 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.14 gi|218884072|ref|YP_002428454.1| - 3.1e-20 72.5 20.2 3.8e-20 72.2 14.0 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|218884072|ref|YP_002428454.1| - 6.4e-06 24.9 22.0 6.4e-06 24.9 15.2 1.8 1 1 1 2 2 2 1 Citrate transporter Meckelin PF09773.4 gi|218884072|ref|YP_002428454.1| - 0.16 9.7 0.3 0.21 9.3 0.2 1.1 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) OrfB_Zn_ribbon PF07282.6 gi|218884074|ref|YP_002428456.1| - 0.019 14.6 0.1 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_IclR PF09339.5 gi|218884075|ref|YP_002428457.1| - 4.8e-08 32.4 0.0 6.3e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|218884075|ref|YP_002428457.1| - 1.7e-05 24.0 0.0 2.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|218884075|ref|YP_002428457.1| - 4.3e-05 23.2 0.0 4.9e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|218884075|ref|YP_002428457.1| - 8.3e-05 22.4 0.1 8.6e-05 22.3 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.7 gi|218884075|ref|YP_002428457.1| - 0.00018 21.5 0.0 0.00023 21.2 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|218884075|ref|YP_002428457.1| - 0.00029 20.4 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|218884075|ref|YP_002428457.1| - 0.00033 20.2 0.0 0.00042 19.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|218884075|ref|YP_002428457.1| - 0.00034 20.2 0.0 0.00042 19.9 0.0 1.1 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|218884075|ref|YP_002428457.1| - 0.00037 20.5 0.0 0.00045 20.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|218884075|ref|YP_002428457.1| - 0.00055 19.3 0.1 0.00061 19.1 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4_2 PF08281.7 gi|218884075|ref|YP_002428457.1| - 0.00058 19.2 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|218884075|ref|YP_002428457.1| - 0.00069 19.2 0.0 0.00093 18.8 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|218884075|ref|YP_002428457.1| - 0.0022 17.6 0.1 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.1 gi|218884075|ref|YP_002428457.1| - 0.0026 17.5 0.0 0.003 17.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|218884075|ref|YP_002428457.1| - 0.005 16.4 0.0 0.006 16.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain DUF2336 PF10098.4 gi|218884075|ref|YP_002428457.1| - 0.0062 15.8 0.0 0.0074 15.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2336) HTH_DeoR PF08220.7 gi|218884075|ref|YP_002428457.1| - 0.0081 15.6 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF2089 PF09862.4 gi|218884075|ref|YP_002428457.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_Tnp_ISL3 PF13542.1 gi|218884075|ref|YP_002428457.1| - 0.014 14.5 0.0 0.026 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 EAP30 PF04157.11 gi|218884075|ref|YP_002428457.1| - 0.014 14.5 0.0 0.017 14.3 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family Sulfolobus_pRN PF05584.6 gi|218884075|ref|YP_002428457.1| - 0.015 15.2 0.1 0.017 15.0 0.1 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein LexA_DNA_bind PF01726.11 gi|218884075|ref|YP_002428457.1| - 0.015 14.8 0.1 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 LexA DNA binding domain GntR PF00392.16 gi|218884075|ref|YP_002428457.1| - 0.017 14.5 0.1 0.021 14.2 0.1 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|218884075|ref|YP_002428457.1| - 0.033 14.1 0.0 0.043 13.8 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|218884075|ref|YP_002428457.1| - 0.036 13.5 0.1 0.055 12.9 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_AsnC-type PF13404.1 gi|218884075|ref|YP_002428457.1| - 0.058 12.9 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|218884075|ref|YP_002428457.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HD PF01966.17 gi|218884076|ref|YP_002428458.1| - 8.6e-10 38.6 0.5 2e-09 37.5 0.3 1.6 1 0 0 1 1 1 1 HD domain DUF2100 PF09873.4 gi|218884079|ref|YP_002428461.1| - 0.0052 16.2 0.1 0.0056 16.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) Clp1 PF06807.9 gi|218884079|ref|YP_002428461.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Pre-mRNA cleavage complex II protein Clp1 SWIRM PF04433.12 gi|218884079|ref|YP_002428461.1| - 0.086 12.9 0.1 0.17 12.0 0.1 1.5 1 0 0 1 1 1 0 SWIRM domain TRAPP PF04051.11 gi|218884080|ref|YP_002428462.1| - 0.02 14.4 0.1 0.16 11.4 0.0 2.0 1 1 0 1 1 1 0 Transport protein particle (TRAPP) component V4R PF02830.13 gi|218884080|ref|YP_002428462.1| - 0.051 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 V4R domain ACT PF01842.20 gi|218884080|ref|YP_002428462.1| - 0.087 12.3 0.2 0.29 10.6 0.1 1.9 1 1 0 1 1 1 0 ACT domain Pericardin_rpt PF07054.6 gi|218884081|ref|YP_002428463.1| - 0.046 13.6 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 Pericardin like repeat DUF1469 PF07332.6 gi|218884082|ref|YP_002428464.1| - 0.51 10.0 4.0 13 5.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2276 PF10040.4 gi|218884083|ref|YP_002428465.1| - 4.1e-06 26.9 0.8 8.4e-06 25.9 0.6 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HD PF01966.17 gi|218884084|ref|YP_002428466.1| - 9.4e-05 22.4 0.0 0.00017 21.5 0.0 1.5 1 0 0 1 1 1 1 HD domain DEAD PF00270.24 gi|218884085|ref|YP_002428467.1| - 6e-12 45.3 0.0 1.7e-10 40.6 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|218884085|ref|YP_002428467.1| - 4.5e-09 36.0 0.0 2.4e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|218884085|ref|YP_002428467.1| - 2.6e-07 30.6 0.0 4.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|218884085|ref|YP_002428467.1| - 0.053 13.2 0.0 1.1 9.0 0.0 2.7 3 0 0 3 3 3 0 Part of AAA domain AAA_25 PF13481.1 gi|218884085|ref|YP_002428467.1| - 0.061 12.7 0.0 0.24 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|218884085|ref|YP_002428467.1| - 0.1 12.7 0.1 1.1 9.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain Cas_Cas5d PF09704.5 gi|218884087|ref|YP_002428469.1| - 4.6e-06 26.3 0.2 8.9e-05 22.2 0.1 2.1 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|218884088|ref|YP_002428470.1| - 1e-65 221.3 0.0 1.5e-65 220.7 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.5 gi|218884089|ref|YP_002428471.1| - 0.0055 16.7 0.1 0.035 14.1 0.1 2.0 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) YqfD PF06898.6 gi|218884089|ref|YP_002428471.1| - 0.038 12.6 0.2 0.044 12.4 0.1 1.1 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD HTH_20 PF12840.2 gi|218884090|ref|YP_002428472.1| - 4.9e-05 23.0 0.0 0.00013 21.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|218884090|ref|YP_002428472.1| - 0.00013 21.5 0.1 0.00029 20.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|218884090|ref|YP_002428472.1| - 0.0032 17.0 0.0 0.0057 16.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HxlR PF01638.12 gi|218884090|ref|YP_002428472.1| - 0.015 14.8 0.1 0.041 13.5 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|218884090|ref|YP_002428472.1| - 0.034 13.7 0.0 0.16 11.6 0.0 2.1 2 0 0 2 2 2 0 MarR family FUR PF01475.14 gi|218884090|ref|YP_002428472.1| - 0.038 13.9 0.0 0.2 11.6 0.0 2.0 2 0 0 2 2 2 0 Ferric uptake regulator family MarR PF01047.17 gi|218884090|ref|YP_002428472.1| - 0.053 13.2 0.2 0.36 10.5 0.0 2.4 2 1 0 2 2 2 0 MarR family DUF2250 PF10007.4 gi|218884090|ref|YP_002428472.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Cas_Cas4 PF01930.12 gi|218884091|ref|YP_002428473.1| - 8.1e-15 55.1 0.0 9.4e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|218884091|ref|YP_002428473.1| - 0.0066 15.8 0.0 0.13 11.6 0.0 2.1 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.4 gi|218884092|ref|YP_002428474.1| - 1.2e-13 50.9 0.0 1.4e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|218884093|ref|YP_002428475.1| - 9.7e-63 211.8 0.0 1.1e-62 211.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Rop-like PF05082.8 gi|218884093|ref|YP_002428475.1| - 0.011 15.1 1.4 0.024 14.1 1.0 1.5 1 0 0 1 1 1 0 Rop-like Tropomyosin PF00261.15 gi|218884093|ref|YP_002428475.1| - 0.11 11.5 4.7 0.21 10.6 1.8 2.1 2 0 0 2 2 2 0 Tropomyosin DUF911 PF06023.7 gi|218884094|ref|YP_002428476.1| - 9.1e-71 238.4 0.0 1.1e-70 238.2 0.0 1.0 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) Cas_Cas4 PF01930.12 gi|218884094|ref|YP_002428476.1| - 4e-06 26.8 0.0 0.013 15.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|218884094|ref|YP_002428476.1| - 5.6e-06 25.9 0.0 8.2e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily TrmB PF01978.14 gi|218884095|ref|YP_002428477.1| - 3.9e-08 32.8 1.3 8.1e-08 31.8 0.7 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|218884095|ref|YP_002428477.1| - 1.6e-07 30.8 0.1 3.7e-07 29.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|218884095|ref|YP_002428477.1| - 6.5e-07 28.6 0.1 1.3e-06 27.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|218884095|ref|YP_002428477.1| - 1.6e-06 27.6 0.2 3.3e-06 26.6 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|218884095|ref|YP_002428477.1| - 6.4e-06 25.8 0.1 1.5e-05 24.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|218884095|ref|YP_002428477.1| - 7.4e-06 25.4 0.0 2.6e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|218884095|ref|YP_002428477.1| - 7.1e-05 22.2 0.1 0.00018 21.0 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|218884095|ref|YP_002428477.1| - 9.4e-05 22.2 0.2 0.00017 21.4 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HrcA_DNA-bdg PF03444.10 gi|218884095|ref|YP_002428477.1| - 0.00013 21.2 0.2 0.00041 19.7 0.1 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.16 gi|218884095|ref|YP_002428477.1| - 0.00015 21.1 0.4 0.00042 19.6 0.3 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|218884095|ref|YP_002428477.1| - 0.0002 20.8 0.1 0.00042 19.7 0.1 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit PaaX PF07848.7 gi|218884095|ref|YP_002428477.1| - 0.00034 20.5 0.2 0.0015 18.5 0.0 2.0 2 0 0 2 2 2 1 PaaX-like protein HTH_5 PF01022.15 gi|218884095|ref|YP_002428477.1| - 0.00043 19.8 0.0 0.00086 18.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|218884095|ref|YP_002428477.1| - 0.00045 19.8 0.1 0.00074 19.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|218884095|ref|YP_002428477.1| - 0.00062 19.7 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|218884095|ref|YP_002428477.1| - 0.00081 18.6 0.2 0.0014 17.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family RPA_C PF08784.6 gi|218884095|ref|YP_002428477.1| - 0.001 19.4 0.0 0.002 18.5 0.0 1.4 1 0 0 1 1 1 1 Replication protein A C terminal Penicillinase_R PF03965.11 gi|218884095|ref|YP_002428477.1| - 0.0012 18.9 0.5 0.0019 18.2 0.4 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_Tnp_ISL3 PF13542.1 gi|218884095|ref|YP_002428477.1| - 0.0013 17.8 0.0 0.0039 16.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 DUF3489 PF11994.3 gi|218884095|ref|YP_002428477.1| - 0.0016 18.3 0.1 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) Sigma70_r4 PF04545.11 gi|218884095|ref|YP_002428477.1| - 0.0016 17.7 0.1 0.0016 17.7 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|218884095|ref|YP_002428477.1| - 0.0018 18.1 0.1 0.0044 16.9 0.0 1.6 2 0 0 2 2 1 1 Transposase Rrf2 PF02082.15 gi|218884095|ref|YP_002428477.1| - 0.0024 17.9 0.1 0.0052 16.8 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.1 gi|218884095|ref|YP_002428477.1| - 0.0034 17.5 0.0 0.0071 16.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix DUF4423 PF14394.1 gi|218884095|ref|YP_002428477.1| - 0.0034 16.9 0.1 0.0052 16.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF387 PF04079.11 gi|218884095|ref|YP_002428477.1| - 0.0045 16.3 0.1 0.0074 15.6 0.1 1.3 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_Crp_2 PF13545.1 gi|218884095|ref|YP_002428477.1| - 0.0066 16.2 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF977 PF06163.6 gi|218884095|ref|YP_002428477.1| - 0.007 16.1 0.2 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_Tnp_Tc3_2 PF01498.13 gi|218884095|ref|YP_002428477.1| - 0.007 16.4 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Transposase IF2_N PF04760.10 gi|218884095|ref|YP_002428477.1| - 0.0096 15.5 1.1 0.092 12.4 0.1 2.2 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region Sigma70_r4_2 PF08281.7 gi|218884095|ref|YP_002428477.1| - 0.0097 15.3 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.1 gi|218884095|ref|YP_002428477.1| - 0.0099 16.1 0.1 0.019 15.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_35 PF13693.1 gi|218884095|ref|YP_002428477.1| - 0.011 15.5 0.1 0.024 14.4 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|218884095|ref|YP_002428477.1| - 0.012 15.0 0.0 0.041 13.4 0.0 2.0 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|218884095|ref|YP_002428477.1| - 0.013 15.0 0.1 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain EAP30 PF04157.11 gi|218884095|ref|YP_002428477.1| - 0.013 14.6 0.1 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_Mga PF08280.6 gi|218884095|ref|YP_002428477.1| - 0.021 14.5 0.1 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.2 gi|218884095|ref|YP_002428477.1| - 0.022 14.9 0.3 0.06 13.5 0.2 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|218884095|ref|YP_002428477.1| - 0.023 14.5 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Sulfolobus_pRN PF05584.6 gi|218884095|ref|YP_002428477.1| - 0.034 14.0 0.3 0.069 13.1 0.2 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_13 PF11972.3 gi|218884095|ref|YP_002428477.1| - 0.035 13.9 0.2 0.078 12.8 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain NUMOD1 PF07453.8 gi|218884095|ref|YP_002428477.1| - 0.07 12.9 0.0 3.9 7.4 0.0 2.3 2 0 0 2 2 2 0 NUMOD1 domain HTH_32 PF13565.1 gi|218884095|ref|YP_002428477.1| - 0.091 13.5 0.1 0.36 11.6 0.0 2.1 2 1 0 2 2 1 0 Homeodomain-like domain RRF_GI PF12614.3 gi|218884095|ref|YP_002428477.1| - 0.11 12.3 0.1 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribosome recycling factor HTH_36 PF13730.1 gi|218884095|ref|YP_002428477.1| - 0.13 12.4 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3692 PF12469.3 gi|218884098|ref|YP_002428480.1| - 2.4e-28 98.7 0.1 4.1e-27 94.7 0.0 3.1 3 2 0 3 3 3 1 CRISPR-associated protein OS-D PF03392.8 gi|218884098|ref|YP_002428480.1| - 0.1 12.5 0.0 10 6.1 0.0 3.0 3 0 0 3 3 3 0 Insect pheromone-binding family, A10/OS-D RAMPs PF03787.10 gi|218884099|ref|YP_002428481.1| - 3e-10 40.3 0.2 2.1e-09 37.5 0.2 2.0 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|218884100|ref|YP_002428482.1| - 3.3e-05 23.8 0.4 8e-05 22.5 0.1 1.7 2 0 0 2 2 2 1 RAMP superfamily Cas_Cmr5 PF09701.5 gi|218884101|ref|YP_002428483.1| - 0.097 12.8 0.0 0.47 10.6 0.0 2.0 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cmr5) DUF3368 PF11848.3 gi|218884101|ref|YP_002428483.1| - 0.1 12.1 0.2 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) RAMPs PF03787.10 gi|218884102|ref|YP_002428484.1| - 7.8e-22 78.1 0.0 1.9e-21 76.9 0.0 1.7 1 1 0 1 1 1 1 RAMP superfamily Cas_DxTHG PF09455.5 gi|218884103|ref|YP_002428485.1| - 1.2e-11 44.4 0.0 2.9e-10 39.8 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family CHB_HEX_C PF03174.8 gi|218884104|ref|YP_002428486.1| - 0.12 12.2 0.0 0.12 12.2 0.0 1.0 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain Cas_APE2256 PF09651.5 gi|218884105|ref|YP_002428487.1| - 2.5e-29 101.6 0.0 3.4e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF1652 PF07865.6 gi|218884109|ref|YP_002428491.1| - 0.00054 19.5 0.1 0.00069 19.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1652) TRAM PF01938.15 gi|218884110|ref|YP_002428492.1| - 4.9e-06 26.2 0.6 6.9e-06 25.7 0.4 1.2 1 0 0 1 1 1 1 TRAM domain DUF2922 PF11148.3 gi|218884110|ref|YP_002428492.1| - 0.074 12.7 0.0 0.14 11.8 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2922) Adenosine_kin PF04008.9 gi|218884112|ref|YP_002428494.1| - 3.7e-75 250.6 0.1 4.2e-75 250.4 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase RepB-RCR_reg PF10723.4 gi|218884113|ref|YP_002428495.1| - 0.86 9.3 7.5 1.1 8.9 4.1 1.9 2 0 0 2 2 2 0 Replication regulatory protein RepB PNP_UDP_1 PF01048.15 gi|218884114|ref|YP_002428496.1| - 9.9e-43 145.7 1.0 1.1e-42 145.5 0.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily tRNA-synt_1e PF01406.14 gi|218884115|ref|YP_002428497.1| - 2.7e-120 401.0 0.0 3.4e-120 400.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|218884115|ref|YP_002428497.1| - 1.4e-13 50.2 2.8 7.3e-10 38.0 1.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|218884115|ref|YP_002428497.1| - 2.7e-08 33.9 0.1 7.1e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.17 gi|218884115|ref|YP_002428497.1| - 9.1e-07 27.2 0.7 5.5e-05 21.3 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|218884115|ref|YP_002428497.1| - 0.038 12.6 0.1 0.18 10.4 0.0 2.1 2 1 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1f PF01921.13 gi|218884115|ref|YP_002428497.1| - 0.048 12.3 0.2 0.16 10.5 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (K) MCE PF02470.15 gi|218884116|ref|YP_002428498.1| - 0.0035 17.3 0.5 0.0061 16.5 0.2 1.6 1 1 0 1 1 1 1 mce related protein Radical_SAM PF04055.16 gi|218884117|ref|YP_002428499.1| - 1.5e-06 28.4 3.5 7.2e-05 23.0 1.2 3.4 2 2 1 3 3 3 1 Radical SAM superfamily MSC PF09402.5 gi|218884118|ref|YP_002428500.1| - 0.0081 14.9 0.2 0.011 14.4 0.1 1.4 1 1 0 1 1 1 1 Man1-Src1p-C-terminal domain Clathrin PF00637.15 gi|218884118|ref|YP_002428500.1| - 0.015 14.9 0.2 0.052 13.1 0.1 2.0 1 1 0 1 1 1 0 Region in Clathrin and VPS TPR_20 PF14561.1 gi|218884118|ref|YP_002428500.1| - 0.043 13.9 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat L27_2 PF09045.5 gi|218884118|ref|YP_002428500.1| - 0.097 12.2 0.2 0.26 10.8 0.1 1.8 2 0 0 2 2 2 0 L27_2 HAD PF12710.2 gi|218884119|ref|YP_002428501.1| - 5.4e-13 49.5 0.0 8.5e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|218884119|ref|YP_002428501.1| - 5.1e-11 43.1 1.2 6.4e-10 39.5 0.9 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|218884119|ref|YP_002428501.1| - 3.4e-09 37.4 0.0 3.2e-07 30.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|218884119|ref|YP_002428501.1| - 1.7e-06 27.8 0.0 5.5e-05 22.8 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|218884119|ref|YP_002428501.1| - 0.024 14.3 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Parvo_NS1 PF01057.12 gi|218884119|ref|YP_002428501.1| - 0.037 12.8 0.1 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Hydrolase_6 PF13344.1 gi|218884119|ref|YP_002428501.1| - 0.067 13.0 0.2 0.58 10.0 0.1 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Zn-ribbon_8 PF09723.5 gi|218884120|ref|YP_002428502.1| - 0.001 18.9 1.2 0.0019 18.1 0.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HTH_5 PF01022.15 gi|218884120|ref|YP_002428502.1| - 0.0083 15.7 0.1 0.017 14.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family UPF0547 PF10571.4 gi|218884120|ref|YP_002428502.1| - 0.0086 15.7 4.3 0.19 11.4 0.2 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|218884120|ref|YP_002428502.1| - 0.078 12.6 1.2 0.13 11.8 0.9 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|218884120|ref|YP_002428502.1| - 0.087 12.5 0.8 0.11 12.2 0.6 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|218884120|ref|YP_002428502.1| - 0.14 11.8 1.5 0.8 9.4 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.1 gi|218884120|ref|YP_002428502.1| - 0.15 11.6 4.3 5.5 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|218884120|ref|YP_002428502.1| - 0.15 11.9 1.0 0.33 10.8 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon Mu-like_Com PF10122.4 gi|218884120|ref|YP_002428502.1| - 0.29 10.2 2.5 0.58 9.2 1.8 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_4 PF13717.1 gi|218884120|ref|YP_002428502.1| - 0.33 10.6 4.8 7.3 6.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|218884120|ref|YP_002428502.1| - 0.82 9.5 3.2 1.1 9.0 0.3 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Sec23_Sec24 PF04810.10 gi|218884120|ref|YP_002428502.1| - 1.8 8.1 7.1 1.7 8.2 0.4 2.3 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF167 PF02594.11 gi|218884121|ref|YP_002428503.1| - 1.7e-14 53.4 0.1 2.4e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 PH_BEACH PF14844.1 gi|218884121|ref|YP_002428503.1| - 0.09 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 PH domain associated with Beige/BEACH TRM PF02005.11 gi|218884122|ref|YP_002428504.1| - 2.3e-73 247.3 0.0 2.8e-73 247.0 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|218884122|ref|YP_002428504.1| - 0.0012 18.4 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|218884122|ref|YP_002428504.1| - 0.0035 17.3 0.0 0.0068 16.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|218884122|ref|YP_002428504.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NTPase_1 PF03266.10 gi|218884123|ref|YP_002428505.1| - 2.7e-48 163.8 0.2 3.4e-48 163.5 0.1 1.1 1 0 0 1 1 1 1 NTPase ArgK PF03308.11 gi|218884123|ref|YP_002428505.1| - 1.5e-05 23.9 0.2 5.6e-05 22.0 0.0 1.9 2 0 0 2 2 2 1 ArgK protein AAA_17 PF13207.1 gi|218884123|ref|YP_002428505.1| - 0.00025 21.8 0.1 0.0003 21.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|218884123|ref|YP_002428505.1| - 0.0003 21.0 0.2 0.00056 20.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.18 gi|218884123|ref|YP_002428505.1| - 0.00034 20.5 0.2 0.0006 19.7 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|218884123|ref|YP_002428505.1| - 0.00038 20.1 0.1 0.002 17.8 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|218884123|ref|YP_002428505.1| - 0.00038 20.6 0.1 0.00063 19.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|218884123|ref|YP_002428505.1| - 0.00083 19.4 0.0 0.0033 17.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain NACHT PF05729.7 gi|218884123|ref|YP_002428505.1| - 0.0019 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain KTI12 PF08433.5 gi|218884123|ref|YP_002428505.1| - 0.0028 16.9 0.0 0.0043 16.3 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|218884123|ref|YP_002428505.1| - 0.005 16.9 0.0 0.0086 16.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_14 PF13173.1 gi|218884123|ref|YP_002428505.1| - 0.0077 16.1 0.0 0.023 14.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|218884123|ref|YP_002428505.1| - 0.0078 15.9 0.3 0.38 10.4 0.0 2.6 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.9 gi|218884123|ref|YP_002428505.1| - 0.013 14.4 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain Miro PF08477.8 gi|218884123|ref|YP_002428505.1| - 0.014 15.9 0.0 0.028 14.9 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_16 PF13191.1 gi|218884123|ref|YP_002428505.1| - 0.019 14.9 0.1 0.059 13.3 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|218884123|ref|YP_002428505.1| - 0.029 14.2 0.0 0.049 13.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|218884123|ref|YP_002428505.1| - 0.038 13.5 0.0 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF2478 PF10649.4 gi|218884123|ref|YP_002428505.1| - 0.041 13.2 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2478) DUF258 PF03193.11 gi|218884123|ref|YP_002428505.1| - 0.054 12.6 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|218884123|ref|YP_002428505.1| - 0.064 12.6 0.1 0.14 11.5 0.1 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DnaB_C PF03796.10 gi|218884123|ref|YP_002428505.1| - 0.07 12.0 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|218884123|ref|YP_002428505.1| - 0.079 12.3 0.0 0.19 11.0 0.0 1.7 2 1 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|218884123|ref|YP_002428505.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|218884123|ref|YP_002428505.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_28 PF13521.1 gi|218884123|ref|YP_002428505.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.17 gi|218884124|ref|YP_002428506.1| - 1.3e-10 40.9 0.3 3.5e-10 39.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|218884124|ref|YP_002428506.1| - 5.8e-06 26.4 0.0 1.4e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|218884124|ref|YP_002428506.1| - 6.5e-05 22.9 0.0 0.00015 21.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|218884124|ref|YP_002428506.1| - 0.0022 18.2 0.0 0.0049 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|218884124|ref|YP_002428506.1| - 0.0043 16.6 0.0 0.026 14.1 0.0 2.4 2 0 0 2 2 2 1 HTH domain MerR PF00376.18 gi|218884124|ref|YP_002428506.1| - 0.005 16.3 0.4 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 MerR family regulatory protein Hjc PF01870.13 gi|218884124|ref|YP_002428506.1| - 0.014 14.9 0.1 0.057 13.0 0.0 2.0 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) HTH_23 PF13384.1 gi|218884124|ref|YP_002428506.1| - 0.053 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF3933 PF13069.1 gi|218884124|ref|YP_002428506.1| - 0.055 13.1 0.6 0.24 11.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3933) HTH_26 PF13443.1 gi|218884124|ref|YP_002428506.1| - 0.059 13.5 0.0 0.14 12.3 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Fibrillarin PF01269.12 gi|218884125|ref|YP_002428507.1| - 2.5e-99 330.8 0.0 2.8e-99 330.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|218884125|ref|YP_002428507.1| - 0.0012 18.4 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|218884125|ref|YP_002428507.1| - 0.0043 16.5 0.0 0.0067 15.9 0.0 1.5 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|218884125|ref|YP_002428507.1| - 0.086 12.8 0.0 0.75 9.8 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain Nop PF01798.13 gi|218884126|ref|YP_002428508.1| - 2.1e-54 182.8 0.6 5e-54 181.6 0.1 1.8 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|218884126|ref|YP_002428508.1| - 6.1e-23 80.3 0.2 1.6e-22 79.0 0.1 1.8 1 0 0 1 1 1 1 NOSIC (NUC001) domain UBA PF00627.26 gi|218884126|ref|YP_002428508.1| - 0.091 12.6 0.1 0.33 10.8 0.0 2.1 2 0 0 2 2 2 0 UBA/TS-N domain PRESAN PF09687.5 gi|218884126|ref|YP_002428508.1| - 1.4 8.9 4.2 0.61 10.1 0.1 2.3 3 0 0 3 3 3 0 Plasmodium RESA N-terminal Ribosomal_S30 PF04758.9 gi|218884127|ref|YP_002428509.1| - 4.3e-12 45.6 0.3 5.1e-12 45.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Epimerase PF01370.16 gi|218884128|ref|YP_002428510.1| - 6.3e-31 107.6 0.0 7.9e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|218884128|ref|YP_002428510.1| - 5.9e-16 58.1 0.0 7.9e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|218884128|ref|YP_002428510.1| - 3.4e-11 42.3 0.0 4.6e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|218884128|ref|YP_002428510.1| - 1.6e-09 37.0 0.1 2.2e-08 33.3 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|218884128|ref|YP_002428510.1| - 7.6e-09 34.8 0.0 2.7e-07 29.7 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|218884128|ref|YP_002428510.1| - 8.9e-09 35.6 0.0 1.9e-08 34.5 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|218884128|ref|YP_002428510.1| - 7.8e-06 25.8 0.0 1.4e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|218884128|ref|YP_002428510.1| - 9.7e-05 21.7 0.0 0.0003 20.1 0.0 1.8 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|218884128|ref|YP_002428510.1| - 0.0051 16.4 0.0 0.014 15.0 0.0 1.7 1 1 0 1 1 1 1 KR domain DapB_N PF01113.15 gi|218884128|ref|YP_002428510.1| - 0.031 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Epimerase_Csub PF13950.1 gi|218884128|ref|YP_002428510.1| - 0.13 12.2 0.5 0.37 10.7 0.3 1.7 1 1 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Semialdhyde_dh PF01118.19 gi|218884128|ref|YP_002428510.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|218884128|ref|YP_002428510.1| - 0.17 12.4 0.0 0.69 10.4 0.0 1.9 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Aminotran_1_2 PF00155.16 gi|218884129|ref|YP_002428511.1| - 3.3e-66 223.7 0.0 3.9e-66 223.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|218884129|ref|YP_002428511.1| - 5.4e-07 28.2 0.0 7.7e-07 27.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|218884129|ref|YP_002428511.1| - 0.00072 18.3 0.0 0.0011 17.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|218884129|ref|YP_002428511.1| - 0.0065 15.0 0.0 0.22 10.0 0.0 2.7 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Radical_SAM PF04055.16 gi|218884129|ref|YP_002428511.1| - 0.017 15.2 0.3 1.1 9.3 0.2 2.5 1 1 0 1 1 1 0 Radical SAM superfamily Beta_elim_lyase PF01212.16 gi|218884129|ref|YP_002428511.1| - 0.043 12.9 0.0 0.08 12.0 0.0 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase Asparaginase PF00710.15 gi|218884130|ref|YP_002428512.1| - 9.2e-89 297.3 0.0 1.1e-88 297.1 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|218884130|ref|YP_002428512.1| - 0.047 13.0 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Periplasmic binding protein domain GatB_N PF02934.10 gi|218884131|ref|YP_002428513.1| - 6.9e-81 271.2 0.0 1e-80 270.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|218884131|ref|YP_002428513.1| - 2.2e-23 82.6 2.0 2.2e-23 82.6 1.4 2.0 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|218884131|ref|YP_002428513.1| - 2.6e-17 62.7 0.2 1.3e-16 60.4 0.0 2.2 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|218884131|ref|YP_002428513.1| - 0.00023 21.0 1.4 0.00023 21.0 1.0 1.9 2 0 0 2 2 2 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.10 gi|218884131|ref|YP_002428513.1| - 0.012 15.1 0.2 0.036 13.5 0.1 1.8 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 DUF1666 PF07891.7 gi|218884131|ref|YP_002428513.1| - 0.13 11.6 2.2 0.27 10.5 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1666) Gp49 PF05973.9 gi|218884132|ref|YP_002428514.1| - 0.035 14.1 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 Phage derived protein Gp49-like (DUF891) Peptidase_C39 PF03412.10 gi|218884132|ref|YP_002428514.1| - 0.056 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase C39 family HTH_IclR PF09339.5 gi|218884133|ref|YP_002428515.1| - 0.008 15.7 0.1 0.037 13.6 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|218884133|ref|YP_002428515.1| - 0.044 13.5 0.3 0.19 11.5 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_psq PF05225.11 gi|218884133|ref|YP_002428515.1| - 0.061 12.8 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_20 PF12840.2 gi|218884133|ref|YP_002428515.1| - 0.076 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|218884133|ref|YP_002428515.1| - 0.076 12.6 0.1 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.14 gi|218884133|ref|YP_002428515.1| - 0.1 12.2 0.1 0.3 10.8 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|218884133|ref|YP_002428515.1| - 0.11 11.9 0.4 0.24 10.8 0.3 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding eIF-5a PF01287.15 gi|218884134|ref|YP_002428516.1| - 1.3e-10 41.0 0.9 2e-10 40.4 0.6 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|218884134|ref|YP_002428516.1| - 1.4e-05 24.8 0.1 4.8e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|218884134|ref|YP_002428516.1| - 0.00026 20.5 2.7 0.00052 19.6 1.9 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|218884134|ref|YP_002428516.1| - 0.064 13.0 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 KOW motif CN_hydrolase PF00795.17 gi|218884136|ref|YP_002428518.1| - 2.1e-05 23.9 0.0 0.0081 15.5 0.0 2.1 1 1 1 2 2 2 2 Carbon-nitrogen hydrolase Topoisom_bac PF01131.15 gi|218884137|ref|YP_002428519.1| - 9.9e-92 307.8 0.5 1.7e-91 307.0 0.3 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|218884137|ref|YP_002428519.1| - 2.1e-21 75.7 0.8 6e-21 74.3 0.0 2.3 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.24 gi|218884137|ref|YP_002428519.1| - 2.9e-13 49.6 0.0 1.3e-12 47.4 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|218884137|ref|YP_002428519.1| - 1.7e-06 27.7 0.0 0.17 11.7 0.0 3.7 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|218884137|ref|YP_002428519.1| - 1.5e-05 24.8 0.0 4.4e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|218884137|ref|YP_002428519.1| - 0.00061 18.6 0.0 0.0013 17.5 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain zf-dskA_traR PF01258.12 gi|218884137|ref|YP_002428519.1| - 0.076 12.7 0.6 0.27 11.0 0.4 2.0 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Flu_NS2 PF00601.14 gi|218884137|ref|YP_002428519.1| - 0.096 12.9 0.1 0.096 12.9 0.1 3.3 3 0 0 3 3 3 0 Influenza non-structural protein (NS2) zinc_ribbon_2 PF13240.1 gi|218884137|ref|YP_002428519.1| - 4.5 6.8 6.6 6.2 6.4 1.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain SSF PF00474.12 gi|218884138|ref|YP_002428520.1| - 1e-19 70.4 35.4 1e-19 70.4 24.5 2.2 2 1 1 3 3 3 1 Sodium:solute symporter family DUF2106 PF09879.4 gi|218884139|ref|YP_002428521.1| - 0.99 8.7 4.8 2.6 7.3 3.3 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2106) Adeno_E3B PF03376.9 gi|218884139|ref|YP_002428521.1| - 1 9.3 3.6 1.3 8.9 2.5 1.4 1 1 0 1 1 1 0 Adenovirus E3B protein Adipogenin PF15202.1 gi|218884139|ref|YP_002428521.1| - 1.1 9.2 3.7 1.2 9.0 2.6 1.2 1 0 0 1 1 1 0 Adipogenin SdpI PF13630.1 gi|218884139|ref|YP_002428521.1| - 3 7.6 8.4 3.4 7.4 5.8 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family MarR_2 PF12802.2 gi|218884140|ref|YP_002428522.1| - 4.5e-08 32.6 0.3 9e-08 31.6 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|218884140|ref|YP_002428522.1| - 1.4e-05 25.3 0.1 3e-05 24.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|218884140|ref|YP_002428522.1| - 1.5e-05 24.2 2.1 4.5e-05 22.7 0.4 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|218884140|ref|YP_002428522.1| - 5.8e-05 22.7 0.2 0.00014 21.4 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|218884140|ref|YP_002428522.1| - 0.00024 20.8 0.5 0.00068 19.3 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|218884140|ref|YP_002428522.1| - 0.00056 19.5 0.2 0.0015 18.1 0.2 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.6 gi|218884140|ref|YP_002428522.1| - 0.0018 17.6 0.3 0.004 16.4 0.2 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF2250 PF10007.4 gi|218884140|ref|YP_002428522.1| - 0.0053 16.6 0.3 0.011 15.6 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) NMT1_2 PF13379.1 gi|218884140|ref|YP_002428522.1| - 0.0062 15.9 0.0 0.013 14.8 0.0 1.6 1 1 0 1 1 1 1 NMT1-like family HTH_Crp_2 PF13545.1 gi|218884140|ref|YP_002428522.1| - 0.0077 16.0 0.3 0.016 14.9 0.2 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|218884140|ref|YP_002428522.1| - 0.013 15.3 1.2 0.06 13.2 0.0 2.6 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|218884140|ref|YP_002428522.1| - 0.015 14.9 1.0 0.16 11.6 0.2 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|218884140|ref|YP_002428522.1| - 0.015 15.1 0.3 0.034 13.9 0.2 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC PAX PF00292.13 gi|218884140|ref|YP_002428522.1| - 0.032 13.9 0.1 0.062 13.0 0.1 1.4 1 0 0 1 1 1 0 'Paired box' domain TBPIP PF07106.8 gi|218884140|ref|YP_002428522.1| - 0.037 13.5 0.1 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) VitK2_biosynth PF02621.9 gi|218884140|ref|YP_002428522.1| - 0.038 13.1 0.0 0.15 11.2 0.0 1.9 2 0 0 2 2 2 0 Menaquinone biosynthesis HTH_IclR PF09339.5 gi|218884140|ref|YP_002428522.1| - 0.054 13.0 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Lipoprotein_9 PF03180.9 gi|218884140|ref|YP_002428522.1| - 0.067 12.0 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 NLPA lipoprotein RPA_C PF08784.6 gi|218884140|ref|YP_002428522.1| - 0.091 13.1 0.2 0.55 10.6 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal LysR_substrate PF03466.15 gi|218884140|ref|YP_002428522.1| - 0.15 11.1 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain UPRTase PF14681.1 gi|218884141|ref|YP_002428523.1| - 5.6e-45 153.0 0.2 6.4e-45 152.9 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|218884141|ref|YP_002428523.1| - 3.4e-07 30.0 1.1 7.9e-07 28.8 0.8 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|218884141|ref|YP_002428523.1| - 0.0005 19.4 0.1 0.00068 18.9 0.1 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|218884141|ref|YP_002428523.1| - 0.078 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain NTP_transferase PF00483.18 gi|218884142|ref|YP_002428524.1| - 1.2e-27 96.8 0.0 1.4e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|218884142|ref|YP_002428524.1| - 1.2e-11 44.9 0.0 1.4e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MatE PF01554.13 gi|218884143|ref|YP_002428525.1| - 1.9e-47 160.8 35.5 3.1e-31 108.1 5.3 2.5 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|218884143|ref|YP_002428525.1| - 3.8e-09 36.4 7.3 3.8e-09 36.4 5.1 4.5 1 1 3 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Glyco_tran_28_C PF04101.11 gi|218884144|ref|YP_002428526.1| - 9e-07 28.6 0.0 1.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Alg14 PF08660.6 gi|218884144|ref|YP_002428526.1| - 3.1e-06 27.3 0.1 6.9e-06 26.1 0.0 1.6 2 0 0 2 2 2 1 Oligosaccharide biosynthesis protein Alg14 like Glyco_trans_1_3 PF13528.1 gi|218884144|ref|YP_002428526.1| - 6.2e-06 25.6 0.0 8.2e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 1 Glyco_trans_4_4 PF13579.1 gi|218884144|ref|YP_002428526.1| - 0.0038 17.3 0.1 0.045 13.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain YjeF_N PF03853.10 gi|218884144|ref|YP_002428526.1| - 0.024 14.2 0.0 0.078 12.5 0.0 1.7 2 0 0 2 2 2 0 YjeF-related protein N-terminus Glyco_trans_4_2 PF13477.1 gi|218884144|ref|YP_002428526.1| - 0.036 13.9 0.0 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase 4-like Cation_efflux PF01545.16 gi|218884145|ref|YP_002428527.1| - 5.1e-33 114.3 15.1 5.7e-33 114.2 10.5 1.0 1 0 0 1 1 1 1 Cation efflux family IL34 PF15036.1 gi|218884146|ref|YP_002428528.1| - 0.0098 15.4 0.0 0.018 14.5 0.0 1.5 1 1 1 2 2 2 1 Interleukin 34 PfkB PF00294.19 gi|218884148|ref|YP_002428530.1| - 2.9e-43 148.1 0.1 4e-43 147.6 0.1 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Rib PF08428.5 gi|218884148|ref|YP_002428530.1| - 0.13 12.0 0.0 0.86 9.4 0.0 2.1 2 0 0 2 2 2 0 Rib/alpha-like repeat PNP_UDP_1 PF01048.15 gi|218884149|ref|YP_002428531.1| - 8.8e-37 126.3 0.4 1.1e-36 125.9 0.3 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Metallophos_2 PF12850.2 gi|218884150|ref|YP_002428532.1| - 2.3e-30 105.5 0.2 2.8e-30 105.2 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|218884150|ref|YP_002428532.1| - 1.5e-09 37.5 1.1 8.7e-08 31.7 0.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|218884150|ref|YP_002428532.1| - 0.00095 18.3 0.0 0.093 11.8 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily HSP20 PF00011.16 gi|218884151|ref|YP_002428533.1| - 3.3e-10 39.7 1.6 1.6e-08 34.3 1.1 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|218884151|ref|YP_002428533.1| - 9.7e-08 31.8 0.0 1.4e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.11 gi|218884151|ref|YP_002428533.1| - 1.1e-06 29.1 0.2 4.6e-06 27.0 0.3 1.8 2 0 0 2 2 2 1 CS domain DPCD PF14913.1 gi|218884151|ref|YP_002428533.1| - 0.12 11.4 0.1 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 DPCD protein family UPF0047 PF01894.12 gi|218884152|ref|YP_002428534.1| - 1.2e-33 115.4 0.1 1.4e-33 115.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 QRPTase_C PF01729.14 gi|218884153|ref|YP_002428535.1| - 2.3e-26 92.3 0.0 1.3e-24 86.5 0.0 2.1 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|218884153|ref|YP_002428535.1| - 4.6e-06 26.3 0.0 8.4e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain HAD_2 PF13419.1 gi|218884154|ref|YP_002428536.1| - 0.00024 21.3 0.1 0.00034 20.8 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Metallophos_2 PF12850.2 gi|218884156|ref|YP_002428538.1| - 0.047 13.5 0.0 0.063 13.1 0.0 1.4 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Succ_CoA_lig PF13607.1 gi|218884157|ref|YP_002428539.1| - 1.7e-53 179.9 0.1 3.6e-53 178.8 0.1 1.6 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|218884157|ref|YP_002428539.1| - 4.6e-25 88.0 0.4 2.6e-24 85.6 0.1 2.3 3 1 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|218884157|ref|YP_002428539.1| - 4.1e-21 75.3 0.3 1.9e-20 73.1 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.12 gi|218884157|ref|YP_002428539.1| - 0.072 13.5 1.2 0.78 10.2 0.2 2.9 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent tRNA_bind PF01588.15 gi|218884158|ref|YP_002428540.1| - 9e-26 89.5 0.0 1e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain TYW3 PF02676.9 gi|218884159|ref|YP_002428541.1| - 4e-39 133.8 0.0 4.8e-39 133.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 DUF2639 PF11121.3 gi|218884159|ref|YP_002428541.1| - 0.031 13.7 0.2 0.14 11.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2639) Ish1 PF10281.4 gi|218884159|ref|YP_002428541.1| - 0.046 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein SDF PF00375.13 gi|218884160|ref|YP_002428542.1| - 9.1e-59 199.1 28.1 1e-58 199.0 19.5 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family PAZ_siRNAbind PF12212.3 gi|218884163|ref|YP_002428545.1| - 0.032 13.8 0.5 0.032 13.8 0.3 1.7 2 1 0 2 2 2 0 Piwi/Argonaute/Zwille siRNA-binding domain Resolvase PF00239.16 gi|218884163|ref|YP_002428545.1| - 0.035 13.9 0.0 0.038 13.8 0.0 1.1 1 0 0 1 1 1 0 Resolvase, N terminal domain Swi5 PF07061.6 gi|218884163|ref|YP_002428545.1| - 0.12 12.1 0.2 0.15 11.8 0.1 1.4 1 1 0 1 1 1 0 Swi5 tRNA_deacylase PF04414.7 gi|218884164|ref|YP_002428546.1| - 2.8e-57 193.2 0.0 3.8e-57 192.8 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase NTPase_I-T PF01931.13 gi|218884166|ref|YP_002428548.1| - 0.00061 19.5 0.0 0.00063 19.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 2-Hacid_dh_C PF02826.14 gi|218884168|ref|YP_002428550.1| - 7.6e-72 240.1 0.1 1.8e-71 238.9 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|218884168|ref|YP_002428550.1| - 7.3e-36 122.5 0.1 8.2e-36 122.4 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|218884168|ref|YP_002428550.1| - 1.1e-06 28.6 0.3 3.9e-05 23.5 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.12 gi|218884168|ref|YP_002428550.1| - 0.0014 18.7 0.1 5.4 7.1 0.0 3.2 3 0 0 3 3 3 2 Dinitrogenase iron-molybdenum cofactor F420_oxidored PF03807.12 gi|218884168|ref|YP_002428550.1| - 0.0062 16.9 0.0 0.031 14.6 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|218884168|ref|YP_002428550.1| - 0.0097 16.0 0.2 0.029 14.4 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|218884168|ref|YP_002428550.1| - 0.025 13.9 0.0 0.15 11.4 0.0 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|218884168|ref|YP_002428550.1| - 0.027 14.1 0.1 0.13 11.8 0.0 2.2 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|218884168|ref|YP_002428550.1| - 0.15 11.8 3.2 3.8 7.2 0.2 2.5 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ParBc PF02195.13 gi|218884169|ref|YP_002428551.1| - 4.1e-16 58.8 0.0 6.9e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|218884169|ref|YP_002428551.1| - 0.0039 15.7 0.0 0.093 11.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1015) DndB PF14072.1 gi|218884169|ref|YP_002428551.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 DNA-sulfur modification-associated DUF4368 PF14287.1 gi|218884169|ref|YP_002428551.1| - 0.15 11.8 0.5 0.49 10.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) eRF1_2 PF03464.10 gi|218884171|ref|YP_002428553.1| - 3.4e-35 121.2 0.0 6e-35 120.4 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|218884171|ref|YP_002428553.1| - 4.2e-20 72.1 0.4 1.3e-18 67.2 0.1 2.9 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|218884171|ref|YP_002428553.1| - 2e-16 59.7 0.0 3.2e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 DUF86 PF01934.12 gi|218884171|ref|YP_002428553.1| - 0.026 14.1 0.0 0.19 11.3 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function DUF86 Lipase_GDSL PF00657.17 gi|218884171|ref|YP_002428553.1| - 0.03 14.1 0.0 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase SpoU_sub_bind PF08032.7 gi|218884171|ref|YP_002428553.1| - 0.34 11.1 2.2 0.43 10.7 0.0 2.4 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding UPF0104 PF03706.8 gi|218884172|ref|YP_002428554.1| - 2.4e-21 76.2 18.7 2.9e-21 76.0 12.4 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) MerE PF05052.7 gi|218884172|ref|YP_002428554.1| - 2.2 8.3 5.0 2.1 8.3 0.1 2.8 3 0 0 3 3 3 0 MerE protein DUF1469 PF07332.6 gi|218884172|ref|YP_002428554.1| - 3.4 7.4 5.8 0.48 10.1 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Ribosomal_L40e PF01020.12 gi|218884173|ref|YP_002428555.1| - 2.1e-05 24.0 4.7 2.3e-05 23.8 3.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|218884173|ref|YP_002428555.1| - 0.00013 21.2 1.6 0.00018 20.8 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|218884173|ref|YP_002428555.1| - 0.00023 20.2 2.5 0.00031 19.8 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|218884173|ref|YP_002428555.1| - 0.0014 18.4 0.7 0.0016 18.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon CpXC PF14353.1 gi|218884173|ref|YP_002428555.1| - 0.022 14.7 0.3 0.53 10.2 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-RanBP PF00641.13 gi|218884173|ref|YP_002428555.1| - 0.024 13.7 2.6 0.085 11.9 1.7 1.9 1 1 1 2 2 2 0 Zn-finger in Ran binding protein and others zf-nanos PF05741.8 gi|218884173|ref|YP_002428555.1| - 0.046 13.6 1.2 0.68 9.9 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain Rpr2 PF04032.11 gi|218884173|ref|YP_002428555.1| - 0.096 12.5 0.8 0.12 12.3 0.5 1.2 1 0 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DNA_RNApol_7kD PF03604.8 gi|218884173|ref|YP_002428555.1| - 0.11 12.0 1.9 3 7.3 0.2 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|218884173|ref|YP_002428555.1| - 0.29 10.8 1.2 0.5 10.0 0.8 1.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DM PF00751.13 gi|218884173|ref|YP_002428555.1| - 0.76 9.3 5.3 0.41 10.2 0.4 2.1 2 0 0 2 2 2 0 DM DNA binding domain zf-FPG_IleRS PF06827.9 gi|218884173|ref|YP_002428555.1| - 1.4 8.6 6.3 8.3 6.1 0.7 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2688 PF10892.3 gi|218884173|ref|YP_002428555.1| - 1.8 8.2 4.5 7.3 6.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) zf-trcl PF13451.1 gi|218884173|ref|YP_002428555.1| - 2.3 7.9 5.7 9.7 5.9 1.3 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|218884173|ref|YP_002428555.1| - 3.1 7.6 5.8 9.4 6.1 4.1 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2204 PF09970.4 gi|218884174|ref|YP_002428556.1| - 2.9e-61 206.1 3.9 3.2e-61 205.9 2.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_2 PF01909.18 gi|218884174|ref|YP_002428556.1| - 0.094 13.0 0.8 0.21 11.9 0.5 2.0 1 1 0 1 1 1 0 Nucleotidyltransferase domain Endonuclease_5 PF04493.9 gi|218884175|ref|YP_002428557.1| - 9.3e-49 165.5 0.0 1.1e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease V BPD_transp_1 PF00528.17 gi|218884176|ref|YP_002428558.1| - 3.7e-23 81.9 20.7 3.7e-23 81.9 14.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|218884176|ref|YP_002428558.1| - 0.00013 21.2 0.0 0.00013 21.2 0.0 2.7 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C UPF0126 PF03458.8 gi|218884176|ref|YP_002428558.1| - 7.4 6.2 15.1 0.43 10.2 4.2 2.9 3 0 0 3 3 3 0 UPF0126 domain BPD_transp_1 PF00528.17 gi|218884177|ref|YP_002428559.1| - 1.2e-41 142.3 7.9 1.2e-41 142.3 5.5 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|218884178|ref|YP_002428560.1| - 4.9e-73 246.1 4.1 7.3e-73 245.5 2.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ACT_7 PF13840.1 gi|218884179|ref|YP_002428561.1| - 1.7e-09 37.0 0.6 4e-09 35.8 0.3 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|218884179|ref|YP_002428561.1| - 1.4e-05 24.4 2.0 0.00015 21.1 0.2 2.8 3 0 0 3 3 3 1 ACT domain HTH_33 PF13592.1 gi|218884179|ref|YP_002428561.1| - 0.013 14.9 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix CTP_transf_2 PF01467.21 gi|218884180|ref|YP_002428562.1| - 3.5e-13 49.9 0.0 4.3e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|218884180|ref|YP_002428562.1| - 0.03 13.3 0.0 0.061 12.3 0.0 1.4 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase MoCF_biosynth PF00994.19 gi|218884181|ref|YP_002428563.1| - 9.2e-34 115.9 0.0 1.3e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain PhnA_Zn_Ribbon PF08274.7 gi|218884182|ref|YP_002428564.1| - 0.0019 17.9 0.2 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|218884182|ref|YP_002428564.1| - 0.0035 17.1 3.5 0.5 10.2 0.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|218884182|ref|YP_002428564.1| - 0.0049 16.0 2.3 0.092 11.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF4428 PF14471.1 gi|218884182|ref|YP_002428564.1| - 0.0058 16.3 0.0 0.0079 15.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.5 gi|218884182|ref|YP_002428564.1| - 0.0067 16.3 1.6 1 9.3 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|218884182|ref|YP_002428564.1| - 0.0077 15.7 2.4 0.97 8.9 0.1 2.3 2 0 0 2 2 2 1 InsA N-terminal domain Lar_restr_allev PF14354.1 gi|218884182|ref|YP_002428564.1| - 0.019 15.2 1.8 0.032 14.5 1.2 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|218884182|ref|YP_002428564.1| - 0.019 14.6 2.2 0.051 13.2 1.5 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-Di19 PF05605.7 gi|218884182|ref|YP_002428564.1| - 0.024 14.7 1.1 0.74 9.9 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF329 PF03884.9 gi|218884182|ref|YP_002428564.1| - 0.026 14.0 0.5 0.82 9.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-RING_3 PF14369.1 gi|218884182|ref|YP_002428564.1| - 0.029 14.3 3.6 0.66 10.0 0.1 2.6 3 0 0 3 3 2 0 zinc-finger zf-TFIIB PF13453.1 gi|218884182|ref|YP_002428564.1| - 0.031 13.4 0.7 0.076 12.2 0.5 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF2197 PF09963.4 gi|218884182|ref|YP_002428564.1| - 0.044 13.7 0.2 0.096 12.6 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) Cren7 PF11520.3 gi|218884182|ref|YP_002428564.1| - 0.048 13.3 0.1 0.12 12.0 0.0 1.7 2 0 0 2 2 2 0 Chromatin protein Cren7 zf-Sec23_Sec24 PF04810.10 gi|218884182|ref|YP_002428564.1| - 0.055 13.0 1.8 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-C4_Topoisom PF01396.14 gi|218884182|ref|YP_002428564.1| - 0.06 12.8 0.6 4.4 6.8 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|218884182|ref|YP_002428564.1| - 0.066 12.7 2.3 0.94 9.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|218884182|ref|YP_002428564.1| - 0.069 13.3 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 Archaeal TRASH domain zf-ISL3 PF14690.1 gi|218884182|ref|YP_002428564.1| - 0.094 12.7 1.6 3.4 7.7 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.1 gi|218884182|ref|YP_002428564.1| - 0.15 12.0 0.1 10 6.0 0.0 2.0 2 0 0 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|218884182|ref|YP_002428564.1| - 0.16 11.3 5.6 2.1 7.7 0.4 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C4_ClpX PF06689.8 gi|218884182|ref|YP_002428564.1| - 0.17 11.4 1.6 9.4 5.8 0.2 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger TFIIS_C PF01096.13 gi|218884182|ref|YP_002428564.1| - 0.19 11.3 0.7 7.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_4 PF13894.1 gi|218884182|ref|YP_002428564.1| - 0.19 12.1 3.0 11 6.6 0.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|218884182|ref|YP_002428564.1| - 0.2 12.0 2.6 14 6.1 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.2 gi|218884182|ref|YP_002428564.1| - 0.23 11.2 1.3 0.78 9.6 0.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|218884182|ref|YP_002428564.1| - 0.3 10.7 2.5 14 5.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|218884182|ref|YP_002428564.1| - 0.32 10.7 2.3 14 5.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|218884182|ref|YP_002428564.1| - 0.49 10.1 4.1 1.6 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF2296 PF10058.4 gi|218884182|ref|YP_002428564.1| - 0.62 9.8 3.0 2 8.2 0.2 2.1 1 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Cys_rich_CPXG PF14255.1 gi|218884182|ref|YP_002428564.1| - 0.71 9.7 0.1 0.71 9.7 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG DNA_ligase_ZBD PF03119.11 gi|218884182|ref|YP_002428564.1| - 1.2 8.9 5.1 2.1 8.0 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Peptidase_M19 PF01244.16 gi|218884183|ref|YP_002428565.1| - 9.9e-71 238.2 0.0 1.1e-70 238.0 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|218884183|ref|YP_002428565.1| - 0.08 12.4 0.0 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase DivIC PF04977.10 gi|218884184|ref|YP_002428566.1| - 0.0012 18.2 0.5 0.0025 17.2 0.3 1.6 1 0 0 1 1 1 1 Septum formation initiator Sigma70_r4_2 PF08281.7 gi|218884184|ref|YP_002428566.1| - 0.0029 17.0 0.0 0.0079 15.6 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 MAD PF05557.8 gi|218884184|ref|YP_002428566.1| - 0.0067 14.5 0.2 0.0067 14.5 0.2 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein bZIP_2 PF07716.10 gi|218884184|ref|YP_002428566.1| - 0.0085 15.8 1.7 0.02 14.6 1.2 1.7 1 0 0 1 1 1 1 Basic region leucine zipper FlgN PF05130.7 gi|218884184|ref|YP_002428566.1| - 0.011 15.9 1.8 1.2 9.4 1.2 2.1 1 1 0 1 1 1 0 FlgN protein IncA PF04156.9 gi|218884184|ref|YP_002428566.1| - 0.014 14.9 0.4 0.041 13.4 0.3 1.7 2 0 0 2 2 2 0 IncA protein HTH_23 PF13384.1 gi|218884184|ref|YP_002428566.1| - 0.014 14.9 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain IFT57 PF10498.4 gi|218884184|ref|YP_002428566.1| - 0.014 14.1 0.4 0.018 13.8 0.3 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Prefoldin_2 PF01920.15 gi|218884184|ref|YP_002428566.1| - 0.018 14.7 2.2 0.041 13.6 1.5 1.7 1 1 0 1 1 1 0 Prefoldin subunit Med9 PF07544.8 gi|218884184|ref|YP_002428566.1| - 0.028 14.1 1.6 0.98 9.2 0.3 2.8 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF555 PF04475.7 gi|218884184|ref|YP_002428566.1| - 0.029 14.3 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF555) DUF904 PF06005.7 gi|218884184|ref|YP_002428566.1| - 0.05 13.9 3.8 0.05 13.9 2.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF904) DivIVA PF05103.8 gi|218884184|ref|YP_002428566.1| - 0.058 13.4 1.2 0.097 12.7 0.3 1.8 2 0 0 2 2 2 0 DivIVA protein Tropomyosin_1 PF12718.2 gi|218884184|ref|YP_002428566.1| - 0.075 12.8 3.0 0.11 12.3 1.8 1.4 1 1 0 1 1 1 0 Tropomyosin like DUF4201 PF13870.1 gi|218884184|ref|YP_002428566.1| - 0.091 12.1 4.1 0.14 11.6 2.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DUF972 PF06156.8 gi|218884184|ref|YP_002428566.1| - 0.096 13.0 0.6 0.16 12.3 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Shugoshin_N PF07558.6 gi|218884184|ref|YP_002428566.1| - 0.18 11.5 4.0 0.25 11.0 2.1 1.8 1 1 0 1 1 1 0 Shugoshin N-terminal coiled-coil region DUF3552 PF12072.3 gi|218884184|ref|YP_002428566.1| - 0.24 10.5 2.5 0.42 9.7 1.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Syntaxin-6_N PF09177.6 gi|218884184|ref|YP_002428566.1| - 0.27 11.6 1.7 0.94 9.9 0.6 2.2 1 1 2 3 3 3 0 Syntaxin 6, N-terminal FlaC_arch PF05377.6 gi|218884184|ref|YP_002428566.1| - 0.55 10.1 3.3 6.2 6.7 0.9 2.9 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) HALZ PF02183.13 gi|218884184|ref|YP_002428566.1| - 0.74 9.5 4.7 1.8 8.3 3.2 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper M PF02370.11 gi|218884184|ref|YP_002428566.1| - 6.1 7.5 5.7 4.6 7.9 0.3 3.0 3 0 0 3 3 2 0 M protein repeat TMF_DNA_bd PF12329.3 gi|218884184|ref|YP_002428566.1| - 9.5 6.1 10.0 0.44 10.3 1.5 2.7 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding MFS_1 PF07690.11 gi|218884187|ref|YP_002428569.1| - 3.5e-34 118.0 49.2 7.5e-34 116.9 33.8 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|218884187|ref|YP_002428569.1| - 3.5e-12 45.6 40.0 4.6e-10 38.6 10.6 2.6 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|218884187|ref|YP_002428569.1| - 4.8e-07 28.5 42.1 9e-05 21.0 8.8 3.0 1 1 1 3 3 3 2 MFS/sugar transport protein ATG22 PF11700.3 gi|218884187|ref|YP_002428569.1| - 0.018 13.5 34.2 5 5.4 23.7 3.6 1 1 0 1 1 1 0 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|218884187|ref|YP_002428569.1| - 0.037 13.8 0.2 0.037 13.8 0.1 4.7 6 0 0 6 6 6 0 MFS_1 like family DUF543 PF04418.7 gi|218884187|ref|YP_002428569.1| - 0.34 10.8 1.9 1.3 8.9 1.3 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF543) Abhydrolase_6 PF12697.2 gi|218884188|ref|YP_002428570.1| - 1.8e-22 80.3 0.0 3.8e-22 79.3 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|218884188|ref|YP_002428570.1| - 1.2e-21 77.0 0.0 1.5e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|218884188|ref|YP_002428570.1| - 1.1e-18 67.6 0.2 2.3e-17 63.2 0.2 2.0 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.16 gi|218884188|ref|YP_002428570.1| - 5e-14 52.0 0.0 9.8e-08 31.4 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.13 gi|218884188|ref|YP_002428570.1| - 3.2e-11 42.9 0.0 7e-08 32.0 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|218884188|ref|YP_002428570.1| - 1.1e-10 41.4 0.1 6.6e-10 38.9 0.0 1.8 1 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|218884188|ref|YP_002428570.1| - 5.6e-09 35.7 0.0 1.3e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase BAAT_C PF08840.6 gi|218884188|ref|YP_002428570.1| - 4.6e-06 26.5 0.0 7.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.8 gi|218884188|ref|YP_002428570.1| - 5.2e-05 22.7 0.0 0.00043 19.8 0.0 2.1 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Esterase PF00756.15 gi|218884188|ref|YP_002428570.1| - 0.00018 21.0 0.0 0.00026 20.4 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DUF2048 PF09752.4 gi|218884188|ref|YP_002428570.1| - 0.00021 20.2 0.0 0.054 12.3 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2048) DUF829 PF05705.9 gi|218884188|ref|YP_002428570.1| - 0.00034 20.3 0.0 0.00048 19.8 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF829) AXE1 PF05448.7 gi|218884188|ref|YP_002428570.1| - 0.00089 17.8 0.5 0.52 8.7 0.1 2.3 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) DUF676 PF05057.9 gi|218884188|ref|YP_002428570.1| - 0.0021 17.3 0.0 0.0033 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative serine esterase (DUF676) DUF1749 PF08538.5 gi|218884188|ref|YP_002428570.1| - 0.0032 16.4 0.7 0.0063 15.4 0.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1749) Abhydrolase_3 PF07859.8 gi|218884188|ref|YP_002428570.1| - 0.0072 15.9 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF915 PF06028.6 gi|218884188|ref|YP_002428570.1| - 0.015 14.3 0.1 0.062 12.3 0.0 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) Lipase_3 PF01764.20 gi|218884188|ref|YP_002428570.1| - 0.025 14.1 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Lipase (class 3) LIP PF03583.9 gi|218884188|ref|YP_002428570.1| - 0.07 12.3 0.2 2.9 7.0 0.1 2.1 2 0 0 2 2 2 0 Secretory lipase GDPD PF03009.12 gi|218884189|ref|YP_002428571.1| - 1e-29 103.8 0.0 6.8e-29 101.1 0.0 1.9 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.14 gi|218884189|ref|YP_002428571.1| - 0.039 13.3 0.1 0.14 11.5 0.0 1.7 1 1 1 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain DUF1667 PF07892.6 gi|218884190|ref|YP_002428572.1| - 9.1e-30 102.1 2.7 1.3e-29 101.7 1.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1667) DUF1445 PF07286.7 gi|218884190|ref|YP_002428572.1| - 0.041 13.5 0.1 0.049 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1445) Molybdop_Fe4S4 PF04879.11 gi|218884190|ref|YP_002428572.1| - 0.5 10.2 2.8 2.3 8.0 2.0 2.1 1 1 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Pyr_redox_2 PF07992.9 gi|218884191|ref|YP_002428573.1| - 1.4e-19 70.7 8.6 7e-19 68.5 6.0 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|218884191|ref|YP_002428573.1| - 3.2e-11 43.4 5.5 0.00021 21.6 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|218884191|ref|YP_002428573.1| - 5e-11 42.3 6.2 9.3e-11 41.4 1.5 2.9 2 2 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|218884191|ref|YP_002428573.1| - 8.6e-09 34.7 10.9 1.7e-05 23.8 1.1 3.5 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|218884191|ref|YP_002428573.1| - 7.1e-08 31.3 6.6 1.5e-05 23.6 0.3 3.7 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|218884191|ref|YP_002428573.1| - 8.8e-08 32.0 0.7 0.0024 17.8 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|218884191|ref|YP_002428573.1| - 3e-06 27.4 1.6 0.024 14.6 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|218884191|ref|YP_002428573.1| - 2.7e-05 23.2 0.8 2.7e-05 23.2 0.5 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A DAO PF01266.19 gi|218884191|ref|YP_002428573.1| - 2.9e-05 23.1 14.7 0.00082 18.3 1.0 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|218884191|ref|YP_002428573.1| - 0.00012 21.3 6.2 0.0021 17.1 0.1 3.1 4 0 0 4 4 4 2 Thi4 family FAD_binding_3 PF01494.14 gi|218884191|ref|YP_002428573.1| - 0.0017 17.5 5.6 0.13 11.2 0.1 3.1 3 0 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.1 gi|218884191|ref|YP_002428573.1| - 0.0035 17.5 0.7 0.11 12.7 0.0 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|218884191|ref|YP_002428573.1| - 0.014 14.9 2.1 3 7.3 0.1 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|218884191|ref|YP_002428573.1| - 0.046 12.6 7.8 0.032 13.1 0.7 3.1 4 0 0 4 4 4 0 Lycopene cyclase protein F420_oxidored PF03807.12 gi|218884191|ref|YP_002428573.1| - 0.4 11.1 0.1 0.4 11.1 0.1 2.2 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|218884192|ref|YP_002428574.1| - 2.4e-70 237.2 0.2 3.6e-70 236.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|218884192|ref|YP_002428574.1| - 9.5e-08 31.9 1.1 1.7e-07 31.1 0.7 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain NAD_binding_8 PF13450.1 gi|218884192|ref|YP_002428574.1| - 4.7e-06 26.5 0.0 1e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|218884192|ref|YP_002428574.1| - 1.2e-05 25.3 0.6 0.00021 21.2 0.4 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|218884192|ref|YP_002428574.1| - 7.7e-05 21.7 3.4 0.0082 15.1 0.7 2.8 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.22 gi|218884192|ref|YP_002428574.1| - 0.00027 21.3 1.7 0.02 15.2 0.3 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|218884192|ref|YP_002428574.1| - 0.00052 18.9 0.2 0.0018 17.2 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain TrkA_N PF02254.13 gi|218884192|ref|YP_002428574.1| - 0.0011 18.9 0.1 0.0034 17.3 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain FAD_binding_3 PF01494.14 gi|218884192|ref|YP_002428574.1| - 0.0017 17.5 0.5 0.0028 16.7 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|218884192|ref|YP_002428574.1| - 0.0027 16.8 5.3 0.0076 15.3 0.4 2.6 2 1 0 2 2 2 1 Thi4 family K_oxygenase PF13434.1 gi|218884192|ref|YP_002428574.1| - 0.01 14.7 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) UDPG_MGDP_dh_N PF03721.9 gi|218884192|ref|YP_002428574.1| - 0.013 14.8 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.1 gi|218884192|ref|YP_002428574.1| - 0.015 15.4 0.0 0.048 13.7 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|218884192|ref|YP_002428574.1| - 0.024 14.2 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|218884192|ref|YP_002428574.1| - 0.031 14.0 0.5 0.23 11.2 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|218884192|ref|YP_002428574.1| - 0.041 12.3 1.9 3.4 6.0 0.3 2.2 2 0 0 2 2 2 0 HI0933-like protein Trp_halogenase PF04820.9 gi|218884192|ref|YP_002428574.1| - 0.63 8.6 4.6 0.77 8.3 0.5 2.0 2 0 0 2 2 2 0 Tryptophan halogenase FGGY_N PF00370.16 gi|218884193|ref|YP_002428575.1| - 4.8e-66 222.5 0.0 6.3e-66 222.1 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|218884193|ref|YP_002428575.1| - 3.9e-59 199.6 0.1 5.7e-59 199.0 0.1 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain Abhydrolase_6 PF12697.2 gi|218884194|ref|YP_002428576.1| - 1.2e-31 110.3 0.0 1.7e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|218884194|ref|YP_002428576.1| - 3e-26 91.0 0.5 6.5e-26 89.9 0.2 1.7 2 0 0 2 2 1 1 Putative lysophospholipase Abhydrolase_5 PF12695.2 gi|218884194|ref|YP_002428576.1| - 2.3e-25 89.0 0.0 3.5e-25 88.4 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|218884194|ref|YP_002428576.1| - 4.8e-19 68.8 0.0 2.5e-17 63.1 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|218884194|ref|YP_002428576.1| - 1.4e-10 40.7 0.0 1.9e-07 30.5 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|218884194|ref|YP_002428576.1| - 1.8e-08 34.1 0.0 0.00011 21.7 0.0 2.4 2 1 0 3 3 3 2 Phospholipase/Carboxylesterase DLH PF01738.13 gi|218884194|ref|YP_002428576.1| - 5.6e-05 22.5 0.0 0.0063 15.8 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|218884194|ref|YP_002428576.1| - 0.00012 21.6 0.0 0.00021 20.8 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S15 PF02129.13 gi|218884194|ref|YP_002428576.1| - 0.00036 20.0 0.1 0.15 11.4 0.0 2.5 3 0 0 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) DUF2305 PF10230.4 gi|218884194|ref|YP_002428576.1| - 0.00044 19.7 0.0 0.0026 17.2 0.0 1.9 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2305) DUF1749 PF08538.5 gi|218884194|ref|YP_002428576.1| - 0.0006 18.8 0.1 0.0081 15.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1749) PhoPQ_related PF10142.4 gi|218884194|ref|YP_002428576.1| - 0.0016 16.9 0.0 0.0045 15.5 0.0 1.6 2 0 0 2 2 2 1 PhoPQ-activated pathogenicity-related protein BAAT_C PF08840.6 gi|218884194|ref|YP_002428576.1| - 0.003 17.2 0.0 0.0085 15.8 0.0 1.7 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|218884194|ref|YP_002428576.1| - 0.0035 16.9 0.0 0.011 15.3 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold LCAT PF02450.10 gi|218884194|ref|YP_002428576.1| - 0.0058 15.6 0.0 0.0087 15.0 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Esterase PF00756.15 gi|218884194|ref|YP_002428576.1| - 0.0083 15.5 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Putative esterase PGAP1 PF07819.8 gi|218884194|ref|YP_002428576.1| - 0.014 15.0 0.1 0.037 13.6 0.0 1.7 2 0 0 2 2 2 0 PGAP1-like protein AXE1 PF05448.7 gi|218884194|ref|YP_002428576.1| - 0.015 13.8 0.0 0.028 12.9 0.0 1.4 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) Caps_synth_CapC PF14102.1 gi|218884194|ref|YP_002428576.1| - 0.019 15.0 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 Capsule biosynthesis CapC DUF3089 PF11288.3 gi|218884194|ref|YP_002428576.1| - 0.028 13.6 0.0 0.037 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) DUF900 PF05990.7 gi|218884194|ref|YP_002428576.1| - 0.032 13.5 0.0 0.42 9.8 0.0 2.0 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF900) Ser_hydrolase PF06821.8 gi|218884194|ref|YP_002428576.1| - 0.033 13.7 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 Serine hydrolase DUF915 PF06028.6 gi|218884194|ref|YP_002428576.1| - 0.09 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Tannase PF07519.6 gi|218884194|ref|YP_002428576.1| - 0.22 10.2 0.0 0.29 9.7 0.0 1.2 1 0 0 1 1 1 0 Tannase and feruloyl esterase Peptidase_S24 PF00717.18 gi|218884196|ref|YP_002428578.1| - 2.6e-07 30.2 0.4 4.7e-07 29.3 0.3 1.4 1 0 0 1 1 1 1 Peptidase S24-like VCBS PF13517.1 gi|218884197|ref|YP_002428579.1| - 0.00089 19.5 2.6 0.2 12.0 0.5 2.5 2 0 0 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CARDB PF07705.6 gi|218884198|ref|YP_002428580.1| - 0.077 13.0 0.4 0.16 12.0 0.3 1.5 1 1 0 1 1 1 0 CARDB HCV_NS4a PF01006.15 gi|218884198|ref|YP_002428580.1| - 0.37 10.3 3.4 0.43 10.1 0.8 2.2 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a HTH_45 PF14947.1 gi|218884199|ref|YP_002428581.1| - 2.6e-17 62.4 2.8 5.2e-17 61.4 1.9 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4252 PF14060.1 gi|218884199|ref|YP_002428581.1| - 0.051 13.1 1.9 0.28 10.7 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4252) Class_IIIsignal PF04021.7 gi|218884200|ref|YP_002428582.1| - 1.8 8.3 5.8 4.2 7.2 4.0 1.6 1 0 0 1 1 1 0 Class III signal peptide IncA PF04156.9 gi|218884201|ref|YP_002428583.1| - 0.012 15.2 0.2 0.013 15.0 0.1 1.1 1 0 0 1 1 1 0 IncA protein DUF4131 PF13567.1 gi|218884201|ref|YP_002428583.1| - 0.021 14.2 0.0 0.022 14.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Cytochrom_B_N PF00033.14 gi|218884201|ref|YP_002428583.1| - 0.028 13.7 0.0 0.036 13.4 0.0 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF4181 PF13789.1 gi|218884201|ref|YP_002428583.1| - 2.7 7.9 5.3 3.3 7.6 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) DUF1469 PF07332.6 gi|218884201|ref|YP_002428583.1| - 4.8 6.9 10.2 7.6 6.2 7.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) CcoS PF03597.10 gi|218884201|ref|YP_002428583.1| - 8.7 5.8 10.0 4.5 6.8 0.9 2.1 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Ribosomal_S27e PF01667.12 gi|218884202|ref|YP_002428584.1| - 7e-17 60.7 0.7 8.4e-17 60.4 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 ADK_lid PF05191.9 gi|218884202|ref|YP_002428584.1| - 0.004 16.7 1.0 0.0088 15.6 0.7 1.5 1 1 0 1 1 1 1 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|218884202|ref|YP_002428584.1| - 0.0086 15.3 0.5 0.013 14.7 0.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.14 gi|218884202|ref|YP_002428584.1| - 0.0097 15.5 0.1 0.011 15.3 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|218884202|ref|YP_002428584.1| - 0.021 14.2 0.6 2.5 7.6 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|218884202|ref|YP_002428584.1| - 0.028 13.6 1.7 0.76 9.0 1.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|218884202|ref|YP_002428584.1| - 0.033 13.9 1.4 0.067 13.0 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|218884202|ref|YP_002428584.1| - 0.048 13.9 0.7 0.17 12.2 0.5 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar Aminotran_1_2 PF00155.16 gi|218884202|ref|YP_002428584.1| - 0.054 12.4 0.0 0.056 12.3 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class I and II zf-ISL3 PF14690.1 gi|218884202|ref|YP_002428584.1| - 0.061 13.3 3.0 0.9 9.6 0.1 2.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|218884202|ref|YP_002428584.1| - 0.069 13.1 0.6 0.11 12.5 0.4 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|218884202|ref|YP_002428584.1| - 0.086 12.6 0.2 0.11 12.2 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon Prok-RING_1 PF14446.1 gi|218884202|ref|YP_002428584.1| - 0.095 12.4 0.7 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-CHY PF05495.7 gi|218884202|ref|YP_002428584.1| - 0.098 12.8 0.2 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 CHY zinc finger zinc_ribbon_2 PF13240.1 gi|218884202|ref|YP_002428584.1| - 0.11 12.0 2.3 0.47 10.0 1.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|218884202|ref|YP_002428584.1| - 0.13 11.7 4.7 0.72 9.3 3.3 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF3797 PF12677.2 gi|218884202|ref|YP_002428584.1| - 0.21 11.2 0.8 5.6 6.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-BED PF02892.10 gi|218884202|ref|YP_002428584.1| - 0.26 11.0 3.4 8.6 6.2 0.1 2.2 1 1 0 2 2 2 0 BED zinc finger zf-IS66 PF13005.2 gi|218884202|ref|YP_002428584.1| - 0.35 10.8 2.3 5.2 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-trcl PF13451.1 gi|218884202|ref|YP_002428584.1| - 0.71 9.5 3.9 43 3.8 2.7 2.2 1 1 0 1 1 1 0 Probable zinc-binding domain Ribosomal_L44 PF00935.14 gi|218884203|ref|YP_002428585.1| - 4.5e-25 87.4 10.6 4.9e-25 87.3 7.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_4 PF13717.1 gi|218884203|ref|YP_002428585.1| - 0.017 14.7 0.2 0.027 14.1 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|218884203|ref|YP_002428585.1| - 0.021 14.4 0.3 0.036 13.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain PyrI_C PF02748.10 gi|218884203|ref|YP_002428585.1| - 0.075 12.4 0.1 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Mu-like_Com PF10122.4 gi|218884203|ref|YP_002428585.1| - 0.09 11.8 0.3 0.13 11.3 0.2 1.3 1 0 0 1 1 1 0 Mu-like prophage protein Com ThiS PF02597.15 gi|218884204|ref|YP_002428586.1| - 7.5e-12 45.5 0.0 8.4e-12 45.3 0.0 1.0 1 0 0 1 1 1 1 ThiS family Acetyltransf_CG PF14542.1 gi|218884205|ref|YP_002428587.1| - 4.5e-21 74.5 0.0 8.3e-21 73.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.19 gi|218884205|ref|YP_002428587.1| - 1.4e-05 24.9 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|218884205|ref|YP_002428587.1| - 0.00043 20.1 0.1 0.0017 18.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|218884205|ref|YP_002428587.1| - 0.00064 19.8 0.0 0.00085 19.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|218884205|ref|YP_002428587.1| - 0.002 18.2 0.0 0.0046 17.0 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain MacB_PCD PF12704.2 gi|218884206|ref|YP_002428588.1| - 0.047 13.2 3.1 0.053 13.1 2.2 1.0 1 0 0 1 1 1 0 MacB-like periplasmic core domain TRC8_N PF13705.1 gi|218884206|ref|YP_002428588.1| - 0.7 8.3 2.7 0.68 8.4 1.9 1.0 1 0 0 1 1 1 0 TRC8 N-terminal domain DNA_primase_lrg PF04104.9 gi|218884209|ref|YP_002428591.1| - 7.3e-34 117.2 0.0 1.5e-33 116.2 0.0 1.4 2 0 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit HTH_24 PF13412.1 gi|218884212|ref|YP_002428594.1| - 1.9e-11 43.1 0.1 7.1e-11 41.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|218884212|ref|YP_002428594.1| - 3.1e-10 39.7 0.0 5.9e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|218884212|ref|YP_002428594.1| - 3.5e-10 39.3 0.0 7.4e-10 38.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|218884212|ref|YP_002428594.1| - 3.9e-08 32.7 0.1 9.6e-08 31.4 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|218884212|ref|YP_002428594.1| - 1.7e-07 31.4 0.1 3.5e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|218884212|ref|YP_002428594.1| - 2.1e-06 27.3 0.0 5.4e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|218884212|ref|YP_002428594.1| - 4.5e-05 23.0 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|218884212|ref|YP_002428594.1| - 0.00038 19.9 0.1 0.00076 18.9 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|218884212|ref|YP_002428594.1| - 0.00061 19.7 0.1 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|218884212|ref|YP_002428594.1| - 0.0013 18.3 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|218884212|ref|YP_002428594.1| - 0.0023 17.4 0.2 0.0041 16.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|218884212|ref|YP_002428594.1| - 0.0037 17.0 0.0 0.0076 16.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|218884212|ref|YP_002428594.1| - 0.0039 16.4 0.0 0.006 15.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_11 PF08279.7 gi|218884212|ref|YP_002428594.1| - 0.0071 15.9 0.1 0.018 14.6 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_1 PF00126.22 gi|218884212|ref|YP_002428594.1| - 0.0073 16.0 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|218884212|ref|YP_002428594.1| - 0.0076 15.5 0.0 0.021 14.1 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|218884212|ref|YP_002428594.1| - 0.01 15.4 0.1 0.024 14.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|218884212|ref|YP_002428594.1| - 0.01 15.7 0.1 0.066 13.1 0.0 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|218884212|ref|YP_002428594.1| - 0.012 15.6 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.7 gi|218884212|ref|YP_002428594.1| - 0.017 15.1 0.1 0.043 13.8 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein RPA_C PF08784.6 gi|218884212|ref|YP_002428594.1| - 0.017 15.5 0.0 0.041 14.3 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal B-block_TFIIIC PF04182.7 gi|218884212|ref|YP_002428594.1| - 0.019 14.8 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.1 gi|218884212|ref|YP_002428594.1| - 0.028 14.2 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|218884212|ref|YP_002428594.1| - 0.036 14.1 0.0 0.068 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|218884212|ref|YP_002428594.1| - 0.064 13.3 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain TMEM154 PF15102.1 gi|218884212|ref|YP_002428594.1| - 0.078 12.6 0.6 0.16 11.7 0.4 1.5 1 0 0 1 1 1 0 TMEM154 protein family CxxCxxCC PF03692.10 gi|218884215|ref|YP_002428597.1| - 1.3e-10 41.6 0.1 1.8e-10 41.1 0.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Aldo_ket_red PF00248.16 gi|218884216|ref|YP_002428598.1| - 1.9e-59 200.8 0.1 2.2e-59 200.5 0.1 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_24 PF13412.1 gi|218884217|ref|YP_002428599.1| - 1.6e-06 27.3 2.0 3.4e-06 26.3 0.4 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|218884217|ref|YP_002428599.1| - 0.00018 20.9 0.1 0.00033 20.1 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|218884217|ref|YP_002428599.1| - 0.0063 16.1 0.1 0.011 15.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|218884217|ref|YP_002428599.1| - 0.11 12.2 0.1 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family ADK PF00406.17 gi|218884219|ref|YP_002428601.1| - 3.1e-49 166.7 0.0 4e-49 166.3 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|218884219|ref|YP_002428601.1| - 8.6e-13 47.7 4.3 1.5e-12 46.9 3.0 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|218884219|ref|YP_002428601.1| - 5e-10 40.2 0.7 1e-09 39.2 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|218884219|ref|YP_002428601.1| - 1.2e-07 32.1 0.0 2.4e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|218884219|ref|YP_002428601.1| - 0.00032 20.5 0.0 0.00066 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|218884219|ref|YP_002428601.1| - 0.019 14.9 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|218884219|ref|YP_002428601.1| - 0.02 14.3 0.1 0.24 10.7 0.0 2.4 3 0 0 3 3 3 0 Thymidylate kinase NACHT PF05729.7 gi|218884219|ref|YP_002428601.1| - 0.037 13.6 0.0 0.074 12.7 0.0 1.5 1 1 0 1 1 1 0 NACHT domain NAD_binding_5 PF07994.7 gi|218884220|ref|YP_002428602.1| - 4.1e-36 125.0 0.0 6.1e-36 124.4 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|218884220|ref|YP_002428602.1| - 5.2e-22 77.7 0.0 9.5e-22 76.9 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase PadR PF03551.9 gi|218884221|ref|YP_002428603.1| - 1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PaaX PF07848.7 gi|218884221|ref|YP_002428603.1| - 0.00021 21.2 0.1 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 PaaX-like protein HTH_27 PF13463.1 gi|218884221|ref|YP_002428603.1| - 0.00084 19.6 0.0 0.0012 19.0 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|218884221|ref|YP_002428603.1| - 0.0015 18.5 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_12 PF08461.5 gi|218884221|ref|YP_002428603.1| - 0.0031 17.1 0.1 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Mrr_N PF14338.1 gi|218884221|ref|YP_002428603.1| - 0.028 14.4 0.0 2.7 8.1 0.0 2.1 1 1 1 2 2 2 0 Mrr N-terminal domain S10_plectin PF03501.10 gi|218884221|ref|YP_002428603.1| - 0.034 13.9 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Plectin/S10 domain DUF3116 PF11313.3 gi|218884221|ref|YP_002428603.1| - 0.035 13.6 0.1 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) TrmB PF01978.14 gi|218884221|ref|YP_002428603.1| - 0.038 13.6 0.4 0.17 11.5 0.1 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB CobS_N PF12556.3 gi|218884221|ref|YP_002428603.1| - 0.083 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Cobaltochelatase CobS subunit N terminal tRNA-synt_2 PF00152.15 gi|218884222|ref|YP_002428604.1| - 1e-89 300.6 0.5 1e-89 300.6 0.3 1.5 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|218884222|ref|YP_002428604.1| - 0.02 14.0 0.3 0.087 12.0 0.1 2.1 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) EcoEI_R_C PF08463.5 gi|218884222|ref|YP_002428604.1| - 0.069 13.0 0.9 1.8 8.4 0.2 2.7 3 0 0 3 3 3 0 EcoEI R protein C-terminal tRNA-synt_2b PF00587.20 gi|218884222|ref|YP_002428604.1| - 0.087 12.3 0.0 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF4017 PF13209.1 gi|218884223|ref|YP_002428605.1| - 0.04 13.7 1.1 0.39 10.5 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4017) DUF4652 PF15525.1 gi|218884224|ref|YP_002428606.1| - 0.035 13.5 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4652) Inositol_P PF00459.20 gi|218884225|ref|YP_002428607.1| - 9.2e-13 48.1 0.0 1.3e-12 47.6 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|218884225|ref|YP_002428607.1| - 5.7e-08 31.9 0.0 8.4e-08 31.4 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Peptidase_M24 PF00557.19 gi|218884226|ref|YP_002428608.1| - 3.5e-55 186.7 0.0 4.6e-55 186.4 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|218884226|ref|YP_002428608.1| - 2.9e-10 40.7 0.0 4.7e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF1194 PF06707.6 gi|218884226|ref|YP_002428608.1| - 0.009 15.0 0.1 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) TF_Zn_Ribbon PF08271.7 gi|218884227|ref|YP_002428609.1| - 0.04 13.2 0.0 0.074 12.3 0.0 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding C1_3 PF07649.7 gi|218884227|ref|YP_002428609.1| - 0.045 13.7 0.1 0.057 13.4 0.1 1.2 1 0 0 1 1 1 0 C1-like domain Acetone_carb_G PF08882.6 gi|218884227|ref|YP_002428609.1| - 0.14 12.2 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Acetone carboxylase gamma subunit Aminotran_5 PF00266.14 gi|218884229|ref|YP_002428611.1| - 4.2e-37 127.7 0.0 4.8e-37 127.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|218884229|ref|YP_002428611.1| - 2.1e-06 26.9 0.0 3.1e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.11 gi|218884229|ref|YP_002428611.1| - 0.00097 17.9 0.0 0.0015 17.3 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Pyridoxal_deC PF00282.14 gi|218884229|ref|YP_002428611.1| - 0.16 10.3 0.0 0.27 9.6 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Apolipoprotein PF01442.13 gi|218884230|ref|YP_002428612.1| - 1.6e-05 24.4 10.4 7.1e-05 22.3 2.3 2.9 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|218884230|ref|YP_002428612.1| - 0.001 18.8 0.5 0.53 10.0 0.0 3.4 3 1 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF892 PF05974.7 gi|218884230|ref|YP_002428612.1| - 0.0011 18.7 3.1 0.057 13.2 0.0 3.4 2 1 2 4 4 4 1 Domain of unknown function (DUF892) DUF2937 PF11157.3 gi|218884230|ref|YP_002428612.1| - 0.0012 18.1 0.6 0.017 14.4 0.0 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF2937) RHH_1 PF01402.16 gi|218884230|ref|YP_002428612.1| - 0.0034 17.2 0.1 0.0034 17.2 0.0 4.5 5 0 0 5 5 4 1 Ribbon-helix-helix protein, copG family Atg14 PF10186.4 gi|218884230|ref|YP_002428612.1| - 0.016 14.1 8.0 0.14 11.0 1.8 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Phasin_2 PF09361.5 gi|218884230|ref|YP_002428612.1| - 0.03 14.3 3.5 1.6 8.7 0.0 3.5 3 1 0 3 3 3 0 Phasin protein DUF2935 PF11155.3 gi|218884230|ref|YP_002428612.1| - 0.036 14.1 0.2 2.8 8.0 0.2 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) HAMP PF00672.20 gi|218884230|ref|YP_002428612.1| - 0.058 13.5 1.3 1.1 9.4 0.1 2.7 2 0 0 2 2 2 0 HAMP domain TMP_2 PF06791.8 gi|218884230|ref|YP_002428612.1| - 0.089 12.3 1.2 2.4 7.7 0.0 2.5 1 1 1 2 2 2 0 Prophage tail length tape measure protein RasGAP PF00616.14 gi|218884230|ref|YP_002428612.1| - 0.091 12.4 0.0 0.28 10.8 0.0 1.7 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase DUF948 PF06103.6 gi|218884230|ref|YP_002428612.1| - 0.095 12.5 0.8 12 5.7 0.0 3.6 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Hormone_1 PF00103.15 gi|218884230|ref|YP_002428612.1| - 0.12 11.7 0.8 22 4.2 0.0 3.0 2 1 0 3 3 3 0 Somatotropin hormone family Prominin PF05478.6 gi|218884230|ref|YP_002428612.1| - 0.13 9.7 0.7 2.3 5.6 0.0 2.2 1 1 1 2 2 2 0 Prominin NYD-SP28 PF14772.1 gi|218884230|ref|YP_002428612.1| - 0.16 12.0 5.6 2.1 8.4 0.5 2.7 2 0 0 2 2 2 0 Sperm tail Phasin PF05597.6 gi|218884230|ref|YP_002428612.1| - 0.27 10.9 15.1 7.1 6.4 0.5 3.8 2 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HisKA PF00512.20 gi|218884230|ref|YP_002428612.1| - 0.33 10.9 7.1 8.5 6.4 1.5 3.8 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF2203 PF09969.4 gi|218884230|ref|YP_002428612.1| - 0.36 11.0 6.6 0.49 10.6 0.5 2.9 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF883 PF05957.8 gi|218884230|ref|YP_002428612.1| - 0.36 11.2 15.4 1.4 9.3 0.9 3.9 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) MutS_III PF05192.13 gi|218884230|ref|YP_002428612.1| - 0.4 10.4 3.0 2.8 7.6 2.1 2.2 1 1 0 1 1 1 0 MutS domain III DUF677 PF05055.7 gi|218884230|ref|YP_002428612.1| - 0.4 9.2 9.5 0.062 11.9 1.4 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF677) COG2 PF06148.6 gi|218884230|ref|YP_002428612.1| - 0.67 9.8 7.3 34 4.3 3.2 3.8 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Sigma70_ner PF04546.8 gi|218884230|ref|YP_002428612.1| - 0.73 9.4 8.1 7.2 6.1 5.6 2.4 1 1 0 1 1 1 0 Sigma-70, non-essential region SUV3_C PF12513.3 gi|218884230|ref|YP_002428612.1| - 0.87 9.0 4.3 2.8 7.4 0.1 3.6 3 2 0 3 3 3 0 Mitochondrial degradasome RNA helicase subunit C terminal Laminin_II PF06009.7 gi|218884230|ref|YP_002428612.1| - 1.4 8.6 5.3 29 4.4 0.0 3.0 2 1 2 4 4 4 0 Laminin Domain II Mod_r PF07200.8 gi|218884230|ref|YP_002428612.1| - 1.6 8.6 7.2 1.2 9.0 0.2 2.8 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein LUC7 PF03194.10 gi|218884230|ref|YP_002428612.1| - 1.6 8.1 7.5 8.8 5.7 5.2 2.2 1 1 0 1 1 1 0 LUC7 N_terminus HSCB_C PF07743.8 gi|218884230|ref|YP_002428612.1| - 2.2 8.8 11.2 1 9.8 0.3 3.6 2 1 2 4 4 4 0 HSCB C-terminal oligomerisation domain ISG65-75 PF11727.3 gi|218884230|ref|YP_002428612.1| - 2.2 7.2 9.7 1 8.3 0.1 2.9 1 1 2 3 3 3 0 Invariant surface glycoprotein HK97-gp10_like PF04883.7 gi|218884230|ref|YP_002428612.1| - 2.3 9.2 7.3 17 6.4 2.1 4.0 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component FlgN PF05130.7 gi|218884230|ref|YP_002428612.1| - 4.2 7.6 7.9 7e+02 0.4 5.5 3.0 1 1 0 1 1 1 0 FlgN protein ATP-synt_B PF00430.13 gi|218884230|ref|YP_002428612.1| - 4.7 7.0 13.4 0.52 10.1 0.8 3.3 2 1 1 3 3 3 0 ATP synthase B/B' CF(0) Fucose_iso_C PF02952.12 gi|218884232|ref|YP_002428614.1| - 2.9e-11 43.0 0.0 5.1e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain YfkD PF14167.1 gi|218884232|ref|YP_002428614.1| - 0.045 12.7 0.1 2.9 6.8 0.0 2.2 2 0 0 2 2 2 0 YfkD-like protein TFIIB PF00382.14 gi|218884233|ref|YP_002428615.1| - 5.6e-19 67.7 0.0 4.9e-11 42.2 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Glyco_hydro_20b PF02838.10 gi|218884233|ref|YP_002428615.1| - 0.02 15.4 0.7 0.88 10.1 0.5 2.3 1 1 0 1 1 1 0 Glycosyl hydrolase family 20, domain 2 Cyclin_C PF02984.14 gi|218884233|ref|YP_002428615.1| - 0.053 13.4 0.0 0.33 10.8 0.0 2.1 2 1 0 2 2 2 0 Cyclin, C-terminal domain DUF1945 PF09178.5 gi|218884233|ref|YP_002428615.1| - 0.12 12.3 0.0 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1945) Antimicrobial19 PF08225.6 gi|218884233|ref|YP_002428615.1| - 5.3 6.5 5.5 0.98 8.8 0.1 2.5 3 0 0 3 3 3 0 Pseudin antimicrobial peptide Gar1 PF04410.9 gi|218884234|ref|YP_002428616.1| - 1.1e-06 28.2 0.0 1.3e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|218884234|ref|YP_002428616.1| - 0.0021 17.9 0.8 0.0027 17.5 0.5 1.4 1 1 0 1 1 1 1 PRC-barrel domain OrfB_Zn_ribbon PF07282.6 gi|218884235|ref|YP_002428617.1| - 0.051 13.2 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain SRP19 PF01922.12 gi|218884236|ref|YP_002428618.1| - 3e-25 88.6 0.2 3.7e-25 88.3 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|218884237|ref|YP_002428619.1| - 8.1e-33 113.3 0.3 8.9e-33 113.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Prenyltransf PF01255.14 gi|218884238|ref|YP_002428620.1| - 4.2e-79 264.8 0.0 4.8e-79 264.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF3584 PF12128.3 gi|218884239|ref|YP_002428621.1| - 8.4e-09 33.3 37.9 1.1e-08 33.0 26.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) IncA PF04156.9 gi|218884239|ref|YP_002428621.1| - 1.2e-08 34.7 52.3 8.6e-05 22.2 17.4 3.1 1 1 2 3 3 3 2 IncA protein DUF948 PF06103.6 gi|218884239|ref|YP_002428621.1| - 2.1e-08 33.8 19.3 8.4e-07 28.7 2.1 4.3 3 1 0 4 4 4 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|218884239|ref|YP_002428621.1| - 7.1e-06 24.9 50.7 0.00075 18.2 13.1 3.1 1 1 2 3 3 3 2 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|218884239|ref|YP_002428621.1| - 1.6e-05 24.2 7.5 6.1e-05 22.3 2.3 2.3 1 1 1 2 2 2 1 Reovirus sigma C capsid protein HOOK PF05622.7 gi|218884239|ref|YP_002428621.1| - 2e-05 22.6 45.2 2.5e-05 22.3 31.4 1.1 1 0 0 1 1 1 1 HOOK protein APG6 PF04111.7 gi|218884239|ref|YP_002428621.1| - 6.3e-05 22.1 43.3 0.011 14.8 11.1 2.2 1 1 0 2 2 2 2 Autophagy protein Apg6 Baculo_PEP_C PF04513.7 gi|218884239|ref|YP_002428621.1| - 0.0002 21.2 17.8 0.0014 18.5 4.9 3.0 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|218884239|ref|YP_002428621.1| - 0.0002 20.4 46.2 0.0023 16.9 12.2 2.1 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 AAA_13 PF13166.1 gi|218884239|ref|YP_002428621.1| - 0.00032 19.3 42.1 0.031 12.7 14.1 2.3 1 1 1 2 2 2 2 AAA domain CENP-F_leu_zip PF10473.4 gi|218884239|ref|YP_002428621.1| - 0.00057 19.7 58.3 0.079 12.8 9.8 4.2 1 1 3 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 WXG100 PF06013.7 gi|218884239|ref|YP_002428621.1| - 0.0011 18.9 5.7 0.035 14.1 0.3 3.8 2 2 0 2 2 2 1 Proteins of 100 residues with WXG TMF_TATA_bd PF12325.3 gi|218884239|ref|YP_002428621.1| - 0.0014 18.3 4.7 0.0014 18.3 3.3 4.2 1 1 3 4 4 4 1 TATA element modulatory factor 1 TATA binding GAS PF13851.1 gi|218884239|ref|YP_002428621.1| - 0.0014 17.8 55.1 0.068 12.3 7.3 3.2 1 1 2 3 3 3 3 Growth-arrest specific micro-tubule binding MscS_porin PF12795.2 gi|218884239|ref|YP_002428621.1| - 0.0018 17.6 38.5 0.074 12.3 2.6 3.2 1 1 2 3 3 3 2 Mechanosensitive ion channel porin domain Laminin_I PF06008.9 gi|218884239|ref|YP_002428621.1| - 0.0021 17.4 39.7 0.031 13.5 5.7 3.1 1 1 2 3 3 3 2 Laminin Domain I Nup54 PF13874.1 gi|218884239|ref|YP_002428621.1| - 0.0023 17.5 4.5 0.0023 17.5 3.1 3.3 1 1 3 4 4 3 2 Nucleoporin complex subunit 54 AAA_27 PF13514.1 gi|218884239|ref|YP_002428621.1| - 0.0023 15.7 35.6 0.0013 16.5 19.6 2.0 1 1 1 2 2 2 1 AAA domain TBPIP PF07106.8 gi|218884239|ref|YP_002428621.1| - 0.0029 17.1 51.5 0.048 13.2 10.8 4.0 1 1 3 4 4 4 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ATG16 PF08614.6 gi|218884239|ref|YP_002428621.1| - 0.0054 16.5 14.8 0.0054 16.5 10.3 4.2 1 1 3 4 4 3 1 Autophagy protein 16 (ATG16) BRE1 PF08647.6 gi|218884239|ref|YP_002428621.1| - 0.0058 16.5 7.8 0.0058 16.5 5.4 4.5 1 1 3 5 5 3 1 BRE1 E3 ubiquitin ligase Med4 PF10018.4 gi|218884239|ref|YP_002428621.1| - 0.0097 15.3 4.1 0.0097 15.3 2.8 3.7 2 2 1 3 3 2 1 Vitamin-D-receptor interacting Mediator subunit 4 Mnd1 PF03962.10 gi|218884239|ref|YP_002428621.1| - 0.01 15.4 44.2 0.044 13.4 5.2 3.6 1 1 2 3 3 3 0 Mnd1 family SpaB_C PF14028.1 gi|218884239|ref|YP_002428621.1| - 0.015 14.8 1.9 0.046 13.2 0.7 2.0 2 1 0 2 2 2 0 SpaB C-terminal domain NPV_P10 PF05531.7 gi|218884239|ref|YP_002428621.1| - 0.018 15.3 20.6 1.6 9.0 4.3 4.4 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.16 gi|218884239|ref|YP_002428621.1| - 0.019 15.2 28.9 0.18 12.1 3.0 3.8 2 1 1 3 3 3 0 Spectrin repeat MbeD_MobD PF04899.7 gi|218884239|ref|YP_002428621.1| - 0.025 14.4 8.5 0.45 10.4 0.2 4.0 3 1 1 4 4 4 0 MbeD/MobD like Seryl_tRNA_N PF02403.17 gi|218884239|ref|YP_002428621.1| - 0.029 14.3 50.8 0.23 11.4 8.1 4.9 2 2 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|218884239|ref|YP_002428621.1| - 0.034 13.8 35.9 0.027 14.2 6.8 3.5 1 1 2 3 3 2 0 Laminin Domain II Syntaxin-6_N PF09177.6 gi|218884239|ref|YP_002428621.1| - 0.046 14.1 31.8 1.4 9.3 2.7 4.7 1 1 3 4 4 4 0 Syntaxin 6, N-terminal DASH_Dam1 PF08653.5 gi|218884239|ref|YP_002428621.1| - 0.057 13.1 2.6 19 5.1 0.1 4.2 3 1 1 4 4 4 0 DASH complex subunit Dam1 Filament PF00038.16 gi|218884239|ref|YP_002428621.1| - 0.085 12.3 44.7 0.094 12.1 12.1 2.7 1 1 0 2 2 2 0 Intermediate filament protein DUF869 PF05911.6 gi|218884239|ref|YP_002428621.1| - 0.087 11.0 39.3 0.16 10.1 22.8 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) DUF972 PF06156.8 gi|218884239|ref|YP_002428621.1| - 0.14 12.4 45.4 0.14 12.4 0.4 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF972) TPR_MLP1_2 PF07926.7 gi|218884239|ref|YP_002428621.1| - 0.22 11.2 48.2 0.073 12.8 2.7 4.0 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein DUF4201 PF13870.1 gi|218884239|ref|YP_002428621.1| - 0.25 10.7 54.1 0.54 9.6 14.7 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DUF2968 PF11180.3 gi|218884239|ref|YP_002428621.1| - 0.38 10.1 27.5 0.55 9.5 1.1 3.7 1 1 1 3 3 3 0 Protein of unknown function (DUF2968) TMP_2 PF06791.8 gi|218884239|ref|YP_002428621.1| - 0.41 10.2 2.5 2.1 7.9 0.4 2.4 2 0 0 2 2 2 0 Prophage tail length tape measure protein WEMBL PF05701.6 gi|218884239|ref|YP_002428621.1| - 0.42 9.0 48.9 6.3 5.1 33.9 2.6 1 1 0 1 1 1 0 Weak chloroplast movement under blue light IFT57 PF10498.4 gi|218884239|ref|YP_002428621.1| - 0.56 8.9 42.3 0.031 13.0 10.9 2.4 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 LXG PF04740.7 gi|218884239|ref|YP_002428621.1| - 0.6 9.8 26.1 0.15 11.8 2.7 3.9 1 1 3 4 4 4 0 LXG domain of WXG superfamily ALIX_LYPXL_bnd PF13949.1 gi|218884239|ref|YP_002428621.1| - 0.63 8.9 52.4 5.4 5.8 8.2 4.2 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV CCDC155 PF14662.1 gi|218884239|ref|YP_002428621.1| - 0.72 9.4 54.0 0.036 13.6 6.1 3.0 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 MCPsignal PF00015.16 gi|218884239|ref|YP_002428621.1| - 0.8 9.2 17.1 1.1 8.7 0.6 3.0 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4200 PF13863.1 gi|218884239|ref|YP_002428621.1| - 0.88 9.5 54.0 0.75 9.7 2.4 5.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) MutS_III PF05192.13 gi|218884239|ref|YP_002428621.1| - 0.92 9.2 25.1 1.5 8.5 6.9 2.2 1 1 1 2 2 2 0 MutS domain III DUF812 PF05667.6 gi|218884239|ref|YP_002428621.1| - 1.2 7.5 47.5 2.9 6.2 10.4 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF812) FliD_N PF02465.13 gi|218884239|ref|YP_002428621.1| - 1.7 9.0 22.4 0.22 11.8 1.9 4.5 2 2 3 5 5 4 0 Flagellar hook-associated protein 2 N-terminus DUF342 PF03961.8 gi|218884239|ref|YP_002428621.1| - 2.2 6.5 48.2 0.24 9.7 10.6 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF342) YscO PF07321.7 gi|218884239|ref|YP_002428621.1| - 2.4 7.9 43.4 1.3 8.8 1.2 3.5 1 1 2 3 3 3 0 Type III secretion protein YscO DUF3373 PF11853.3 gi|218884239|ref|YP_002428621.1| - 2.5 6.5 23.3 2.6 6.5 2.8 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3373) Allexi_40kDa PF05549.6 gi|218884239|ref|YP_002428621.1| - 2.7 7.2 23.0 0.068 12.4 2.3 3.1 1 1 3 4 4 4 0 Allexivirus 40kDa protein Snapin_Pallidin PF14712.1 gi|218884239|ref|YP_002428621.1| - 2.9 8.2 39.6 0.086 13.1 5.6 4.4 1 1 4 5 5 5 0 Snapin/Pallidin DivIVA PF05103.8 gi|218884239|ref|YP_002428621.1| - 3.1 7.8 43.0 0.97 9.4 2.9 4.8 1 1 3 5 5 5 0 DivIVA protein ArdA PF07275.6 gi|218884239|ref|YP_002428621.1| - 3.2 7.9 10.0 5.7 7.1 0.6 3.1 1 1 2 3 3 3 0 Antirestriction protein (ArdA) DUF2408 PF10303.4 gi|218884239|ref|YP_002428621.1| - 3.9 7.6 31.9 0.51 10.4 8.3 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF2408) DUF1664 PF07889.7 gi|218884239|ref|YP_002428621.1| - 4 7.2 30.4 0.72 9.6 3.3 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF2730 PF10805.3 gi|218884239|ref|YP_002428621.1| - 4.1 7.2 31.8 0.27 10.9 1.1 4.7 1 1 2 4 4 4 0 Protein of unknown function (DUF2730) Syntaxin PF00804.20 gi|218884239|ref|YP_002428621.1| - 4.3 7.5 40.2 39 4.4 10.7 4.1 1 1 1 2 2 1 0 Syntaxin ADIP PF11559.3 gi|218884239|ref|YP_002428621.1| - 5.1 6.9 47.3 1.4 8.7 5.6 3.9 1 1 3 4 4 4 0 Afadin- and alpha -actinin-Binding DUF749 PF05370.6 gi|218884239|ref|YP_002428621.1| - 5.7 6.9 14.5 3.2 7.7 0.3 4.3 2 1 2 4 4 4 0 Domain of unknown function (DUF749) ATP-grasp_5 PF13549.1 gi|218884240|ref|YP_002428622.1| - 2e-81 272.4 0.2 2.2e-81 272.2 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|218884240|ref|YP_002428622.1| - 1.8e-06 27.4 0.3 3.2e-06 26.6 0.2 1.6 1 1 0 1 1 1 1 ATP-grasp domain GRDA PF04723.9 gi|218884240|ref|YP_002428622.1| - 0.015 14.9 0.2 0.73 9.5 0.0 2.2 2 0 0 2 2 2 0 Glycine reductase complex selenoprotein A ADH_zinc_N PF00107.21 gi|218884240|ref|YP_002428622.1| - 0.11 12.0 0.1 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Succ_CoA_lig PF13607.1 gi|218884241|ref|YP_002428623.1| - 3.7e-52 175.5 1.3 3.4e-51 172.4 0.2 2.5 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|218884241|ref|YP_002428623.1| - 1.4e-29 102.6 0.1 6.6e-28 97.2 0.0 2.5 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|218884241|ref|YP_002428623.1| - 2.3e-16 60.0 0.1 8.8e-16 58.2 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.12 gi|218884241|ref|YP_002428623.1| - 0.0072 16.7 0.2 1.4 9.3 0.0 3.6 4 1 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|218884241|ref|YP_002428623.1| - 0.019 15.5 0.0 2.3 8.7 0.0 3.1 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Ferrochelatase PF00762.14 gi|218884241|ref|YP_002428623.1| - 0.047 12.6 0.0 0.087 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferrochelatase Peripla_BP_3 PF13377.1 gi|218884241|ref|YP_002428623.1| - 0.099 12.6 0.0 1.3 9.0 0.0 2.5 3 0 0 3 3 3 0 Periplasmic binding protein-like domain HAD PF12710.2 gi|218884241|ref|YP_002428623.1| - 0.13 12.4 0.0 0.41 10.7 0.0 2.0 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Chromate_transp PF02417.10 gi|218884242|ref|YP_002428624.1| - 5.3e-46 156.2 17.2 6e-46 156.1 11.9 1.0 1 0 0 1 1 1 1 Chromate transporter NTPase_P4 PF11602.3 gi|218884242|ref|YP_002428624.1| - 0.081 11.8 0.2 0.11 11.4 0.1 1.1 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 BLOC1_2 PF10046.4 gi|218884243|ref|YP_002428625.1| - 0.00024 21.1 7.4 0.0054 16.8 2.8 2.5 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DapH_N PF08503.5 gi|218884243|ref|YP_002428625.1| - 0.001 19.1 3.6 0.83 9.8 0.1 3.2 1 1 2 3 3 3 2 Tetrahydrodipicolinate succinyltransferase N-terminal BDV_P24 PF06595.6 gi|218884243|ref|YP_002428625.1| - 0.0018 18.0 2.5 0.0025 17.6 1.7 1.1 1 0 0 1 1 1 1 Borna disease virus P24 protein PRC PF05239.11 gi|218884243|ref|YP_002428625.1| - 0.0046 16.7 0.7 0.016 15.0 0.1 1.9 2 0 0 2 2 2 1 PRC-barrel domain Integrin_beta PF00362.13 gi|218884243|ref|YP_002428625.1| - 0.023 13.6 0.3 0.026 13.4 0.2 1.2 1 0 0 1 1 1 0 Integrin, beta chain Baculo_PEP_C PF04513.7 gi|218884243|ref|YP_002428625.1| - 0.031 14.0 0.1 0.098 12.4 0.0 1.8 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus T2SF PF00482.18 gi|218884243|ref|YP_002428625.1| - 0.041 13.8 0.4 0.081 12.8 0.2 1.6 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F V_ATPase_I PF01496.14 gi|218884243|ref|YP_002428625.1| - 0.054 11.3 3.3 0.07 10.9 2.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2721 PF11026.3 gi|218884243|ref|YP_002428625.1| - 0.085 12.4 0.5 0.23 11.0 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) Peptidase_C65 PF10275.4 gi|218884243|ref|YP_002428625.1| - 0.1 11.9 2.4 0.21 10.8 1.4 1.6 1 1 0 1 1 1 0 Peptidase C65 Otubain DNA_primase_lrg PF04104.9 gi|218884243|ref|YP_002428625.1| - 0.1 11.8 1.2 0.14 11.3 0.9 1.3 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit Bacillus_HBL PF05791.6 gi|218884243|ref|YP_002428625.1| - 0.17 11.2 2.1 0.24 10.7 0.5 1.8 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) DUF883 PF05957.8 gi|218884243|ref|YP_002428625.1| - 0.19 12.1 3.3 0.13 12.6 1.0 1.7 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) CENP-Q PF13094.1 gi|218884243|ref|YP_002428625.1| - 0.24 11.4 7.0 0.36 10.8 4.8 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit HAUS-augmin3 PF14932.1 gi|218884243|ref|YP_002428625.1| - 0.31 10.1 5.0 0.072 12.2 1.4 1.4 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 NPV_P10 PF05531.7 gi|218884243|ref|YP_002428625.1| - 0.34 11.1 3.4 3.4 7.9 0.3 3.0 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|218884243|ref|YP_002428625.1| - 0.37 11.2 3.2 2.1 8.7 2.2 2.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF1098 PF06497.6 gi|218884243|ref|YP_002428625.1| - 0.44 10.6 3.5 1.1 9.3 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1098) Spc7 PF08317.6 gi|218884243|ref|YP_002428625.1| - 0.63 8.6 12.2 0.32 9.6 5.7 1.9 1 1 0 2 2 2 0 Spc7 kinetochore protein Prefoldin PF02996.12 gi|218884243|ref|YP_002428625.1| - 0.69 9.5 7.4 6.5 6.4 0.0 3.2 2 1 1 3 3 3 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|218884243|ref|YP_002428625.1| - 0.91 9.9 3.4 11 6.5 0.1 3.0 4 0 0 4 4 3 0 MerR, DNA binding DUF342 PF03961.8 gi|218884243|ref|YP_002428625.1| - 1 7.6 8.5 1.2 7.4 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Fib_alpha PF08702.5 gi|218884243|ref|YP_002428625.1| - 2 8.5 4.8 2.3 8.3 1.9 1.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family FliT PF05400.8 gi|218884243|ref|YP_002428625.1| - 2.3 8.6 5.1 0.92 9.9 1.4 1.8 2 0 0 2 2 2 0 Flagellar protein FliT DUF724 PF05266.9 gi|218884243|ref|YP_002428625.1| - 2.3 7.7 10.4 1.7 8.2 6.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF724) eIF-4B PF06273.6 gi|218884243|ref|YP_002428625.1| - 3.3 6.3 4.9 4.2 6.0 3.4 1.2 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B Prefoldin_2 PF01920.15 gi|218884243|ref|YP_002428625.1| - 5.2 6.8 13.0 72 3.2 5.1 3.1 2 1 0 2 2 2 0 Prefoldin subunit IncA PF04156.9 gi|218884243|ref|YP_002428625.1| - 6.2 6.3 8.0 13 5.3 5.6 1.5 1 1 0 1 1 1 0 IncA protein PmbA_TldD PF01523.11 gi|218884244|ref|YP_002428626.1| - 9.9e-56 189.1 0.0 1.6e-55 188.4 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|218884245|ref|YP_002428627.1| - 1.2e-55 188.9 0.0 1.7e-55 188.4 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3096 PF11295.3 gi|218884246|ref|YP_002428628.1| - 0.00034 20.0 12.1 0.00056 19.3 7.6 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3096) DUF308 PF03729.8 gi|218884246|ref|YP_002428628.1| - 0.0026 17.7 8.8 0.012 15.5 6.0 1.8 1 1 1 2 2 2 2 Short repeat of unknown function (DUF308) COPI_assoc PF08507.5 gi|218884246|ref|YP_002428628.1| - 0.014 15.0 3.7 0.017 14.7 2.6 1.1 1 0 0 1 1 1 0 COPI associated protein Neurensin PF14927.1 gi|218884246|ref|YP_002428628.1| - 0.029 13.7 0.4 0.029 13.7 0.3 1.1 1 0 0 1 1 1 0 Neurensin DUF3040 PF11239.3 gi|218884246|ref|YP_002428628.1| - 0.26 11.3 1.3 0.34 10.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) YtpI PF14007.1 gi|218884246|ref|YP_002428628.1| - 0.34 10.8 3.8 0.67 9.9 2.6 1.4 1 1 0 1 1 1 0 YtpI-like protein CD20 PF04103.10 gi|218884246|ref|YP_002428628.1| - 0.47 10.3 3.0 0.72 9.7 2.1 1.4 1 1 0 1 1 1 0 CD20-like family DUF2892 PF11127.3 gi|218884246|ref|YP_002428628.1| - 0.68 9.8 3.0 0.91 9.3 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF872 PF05915.7 gi|218884246|ref|YP_002428628.1| - 1.2 8.9 4.6 1.7 8.5 3.2 1.3 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) PhoU PF01895.14 gi|218884247|ref|YP_002428629.1| - 1.5e-24 86.2 13.0 2e-17 63.4 4.9 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|218884247|ref|YP_002428629.1| - 3.9e-11 42.4 0.0 8.4e-11 41.3 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE CLCA_N PF08434.6 gi|218884247|ref|YP_002428629.1| - 0.029 13.5 0.0 0.053 12.7 0.0 1.4 1 0 0 1 1 1 0 Calcium-activated chloride channel IpaB_EvcA PF03278.8 gi|218884247|ref|YP_002428629.1| - 0.052 12.7 0.0 0.1 11.8 0.0 1.5 1 0 0 1 1 1 0 IpaB/EvcA family DUF1905 PF08922.6 gi|218884247|ref|YP_002428629.1| - 0.067 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Nop14 PF04147.7 gi|218884247|ref|YP_002428629.1| - 0.071 11.0 0.1 0.094 10.6 0.1 1.1 1 0 0 1 1 1 0 Nop14-like family ParBc PF02195.13 gi|218884248|ref|YP_002428630.1| - 6.5e-08 32.5 0.0 0.00054 20.0 0.0 2.4 2 0 0 2 2 2 2 ParB-like nuclease domain ParBc_2 PF08857.6 gi|218884248|ref|YP_002428630.1| - 9.3e-06 25.5 0.2 0.031 14.0 0.0 2.4 2 1 0 2 2 2 2 Putative ParB-like nuclease DUF134 PF02001.11 gi|218884250|ref|YP_002428632.1| - 6.1e-14 51.8 0.0 7.6e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_23 PF13384.1 gi|218884250|ref|YP_002428632.1| - 3.7e-05 23.2 0.2 9.1e-05 21.9 0.2 1.6 1 1 1 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|218884250|ref|YP_002428632.1| - 4.4e-05 22.8 0.1 6.2e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_ECF PF07638.6 gi|218884250|ref|YP_002428632.1| - 0.0001 22.0 0.2 0.00012 21.8 0.1 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.1 gi|218884250|ref|YP_002428632.1| - 0.0004 20.3 0.1 0.0005 20.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|218884250|ref|YP_002428632.1| - 0.0011 18.1 0.1 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1492 PF07374.6 gi|218884250|ref|YP_002428632.1| - 0.01 15.8 0.0 0.013 15.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_10 PF04967.7 gi|218884250|ref|YP_002428632.1| - 0.018 14.5 0.1 0.036 13.6 0.0 1.6 1 1 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|218884250|ref|YP_002428632.1| - 0.027 14.6 0.0 0.031 14.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_31 PF13560.1 gi|218884250|ref|YP_002428632.1| - 0.032 14.4 0.1 0.042 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|218884250|ref|YP_002428632.1| - 0.057 13.1 0.1 0.07 12.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF357 PF04010.8 gi|218884252|ref|YP_002428634.1| - 0.036 13.7 0.1 0.038 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF357) DUF4164 PF13747.1 gi|218884252|ref|YP_002428634.1| - 0.041 13.9 0.1 0.042 13.9 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) UvsY PF11056.3 gi|218884252|ref|YP_002428634.1| - 0.084 12.9 0.0 0.084 12.9 0.0 1.0 1 0 0 1 1 1 0 Recombination, repair and ssDNA binding protein UvsY DS PF01916.12 gi|218884255|ref|YP_002428637.1| - 4.3e-61 206.6 0.1 7.1e-61 205.9 0.1 1.3 1 1 0 1 1 1 1 Deoxyhypusine synthase MSP7_C PF12948.2 gi|218884255|ref|YP_002428637.1| - 0.019 15.2 1.4 0.035 14.3 0.9 1.4 1 0 0 1 1 1 0 MSP7-like protein C-terminal domain Tox-MPTase3 PF15639.1 gi|218884255|ref|YP_002428637.1| - 0.041 13.6 0.4 4.2 7.1 0.0 2.3 1 1 1 2 2 2 0 Metallopeptidase toxin 3 NADHdh PF00146.16 gi|218884256|ref|YP_002428638.1| - 9e-38 130.0 19.6 1.1e-37 129.7 13.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF4149 PF13664.1 gi|218884256|ref|YP_002428638.1| - 1.2 9.1 7.0 7.8 6.6 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) MDM31_MDM32 PF08118.6 gi|218884257|ref|YP_002428639.1| - 0.0094 14.4 0.4 0.0094 14.4 0.3 1.2 1 0 0 1 1 1 1 Yeast mitochondrial distribution and morphology (MDM) proteins MNHE PF01899.11 gi|218884258|ref|YP_002428640.1| - 4.2e-37 127.1 3.2 4.9e-37 126.9 2.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q2 PF00420.19 gi|218884259|ref|YP_002428641.1| - 2.2e-15 56.0 1.4 2.9e-15 55.6 0.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF350 PF03994.9 gi|218884259|ref|YP_002428641.1| - 0.55 10.0 3.3 0.56 9.9 0.4 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) MnhB PF04039.8 gi|218884260|ref|YP_002428642.1| - 1.2e-14 54.3 16.3 1.2e-14 54.3 11.3 3.0 2 2 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.4 gi|218884260|ref|YP_002428642.1| - 0.0056 16.0 0.5 0.0056 16.0 0.4 2.2 2 1 0 2 2 2 1 Predicted membrane protein (DUF2106) DUF4040 PF13244.1 gi|218884261|ref|YP_002428643.1| - 2.5e-14 53.0 4.8 3.1e-14 52.7 3.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q1 PF00361.15 gi|218884261|ref|YP_002428643.1| - 0.0016 17.7 1.3 0.0017 17.6 0.9 1.1 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains EamA PF00892.15 gi|218884261|ref|YP_002428643.1| - 0.21 11.6 9.5 0.4 10.7 6.7 1.4 1 1 0 1 1 1 0 EamA-like transporter family DUF4022 PF13214.1 gi|218884261|ref|YP_002428643.1| - 0.23 11.5 2.2 1.8 8.7 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4022) EmrE PF13536.1 gi|218884261|ref|YP_002428643.1| - 1.3 9.2 5.0 1.7 8.9 3.5 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter TctB PF07331.6 gi|218884261|ref|YP_002428643.1| - 1.4 8.6 6.3 0.31 10.6 1.4 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2768 PF10966.3 gi|218884261|ref|YP_002428643.1| - 5.8 7.1 7.7 2.8 8.1 3.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2768) PhaG_MnhG_YufB PF03334.9 gi|218884262|ref|YP_002428644.1| - 2.6e-18 65.8 8.4 3.3e-18 65.5 5.9 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4231 PF14015.1 gi|218884262|ref|YP_002428644.1| - 0.21 11.5 1.5 0.38 10.7 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF973 PF06157.6 gi|218884262|ref|YP_002428644.1| - 5.6 5.8 9.6 6.4 5.6 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3899 PF13038.1 gi|218884262|ref|YP_002428644.1| - 7.9 6.7 8.5 1.5 9.0 2.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) MrpF_PhaF PF04066.8 gi|218884263|ref|YP_002428645.1| - 3.4e-05 24.0 6.8 3.4e-05 24.0 4.7 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) Fer4 PF00037.22 gi|218884264|ref|YP_002428646.1| - 1.7e-17 62.2 6.7 3.2e-09 35.9 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218884264|ref|YP_002428646.1| - 9.8e-13 48.2 9.4 1.5e-12 47.7 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218884264|ref|YP_002428646.1| - 2.2e-11 44.3 28.3 4e-07 30.6 7.3 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|218884264|ref|YP_002428646.1| - 5.3e-11 42.1 9.1 9.7e-11 41.3 6.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|218884264|ref|YP_002428646.1| - 2.4e-10 40.0 5.7 1.5e-05 24.7 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218884264|ref|YP_002428646.1| - 4.8e-10 38.8 9.4 4.8e-05 23.0 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218884264|ref|YP_002428646.1| - 6e-10 39.2 9.4 1.7e-09 37.8 6.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218884264|ref|YP_002428646.1| - 1.3e-09 37.4 9.1 0.00019 21.1 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|218884264|ref|YP_002428646.1| - 9.2e-08 31.9 10.3 1.7e-07 31.1 7.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|218884264|ref|YP_002428646.1| - 1.1e-07 32.1 3.5 0.001 19.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218884264|ref|YP_002428646.1| - 4.3e-07 30.0 16.7 0.00057 20.2 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|218884264|ref|YP_002428646.1| - 1.7e-06 28.4 3.6 0.0069 16.9 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|218884264|ref|YP_002428646.1| - 2.3e-06 27.8 10.0 3e-05 24.2 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218884264|ref|YP_002428646.1| - 5.3e-06 26.3 10.7 0.011 16.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|218884264|ref|YP_002428646.1| - 0.00036 20.8 5.6 0.11 12.8 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|218884264|ref|YP_002428646.1| - 0.0028 17.5 2.9 0.37 10.6 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Complex1_49kDa PF00346.14 gi|218884265|ref|YP_002428647.1| - 1.8e-51 174.7 0.0 4.2e-43 147.3 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|218884265|ref|YP_002428647.1| - 0.00038 19.3 0.0 0.00052 18.9 0.0 1.2 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|218884266|ref|YP_002428648.1| - 1.4e-27 95.9 0.0 2.3e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|218884266|ref|YP_002428648.1| - 2.6e-09 36.7 0.0 4.4e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF35_N PF12172.3 gi|218884266|ref|YP_002428648.1| - 0.017 15.0 0.3 0.47 10.4 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Oxidored_q1 PF00361.15 gi|218884267|ref|YP_002428649.1| - 5.2e-31 107.8 18.2 5.2e-31 107.8 12.6 2.6 3 1 1 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|218884267|ref|YP_002428649.1| - 5.8e-08 32.1 8.3 5.8e-08 32.1 5.8 2.0 2 0 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Peptidase_M20 PF01546.23 gi|218884268|ref|YP_002428650.1| - 2.7e-32 111.8 0.0 3.2e-32 111.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|218884268|ref|YP_002428650.1| - 1.3e-16 60.3 0.0 8.3e-16 57.7 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|218884268|ref|YP_002428650.1| - 0.00023 20.9 0.0 0.0009 19.0 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M32 PF02074.10 gi|218884269|ref|YP_002428651.1| - 2.5e-197 656.4 2.8 2.9e-197 656.2 2.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase LAGLIDADG_1 PF00961.14 gi|218884269|ref|YP_002428651.1| - 0.12 12.9 0.0 0.3 11.6 0.0 1.6 1 0 0 1 1 1 0 LAGLIDADG endonuclease HTH_17 PF12728.2 gi|218884271|ref|YP_002428653.1| - 8.9e-13 48.2 0.4 8.1e-12 45.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Resolvase PF00239.16 gi|218884271|ref|YP_002428653.1| - 0.00021 21.1 0.1 0.0003 20.6 0.1 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain Phage_NinH PF06322.6 gi|218884271|ref|YP_002428653.1| - 0.0035 16.9 0.2 0.11 12.1 0.0 2.2 2 0 0 2 2 2 1 Phage NinH protein MerR PF00376.18 gi|218884271|ref|YP_002428653.1| - 0.015 14.8 0.4 0.11 12.0 0.0 2.1 2 0 0 2 2 2 0 MerR family regulatory protein HTH_23 PF13384.1 gi|218884271|ref|YP_002428653.1| - 0.035 13.7 2.7 0.077 12.6 0.0 2.5 2 1 1 3 3 3 0 Homeodomain-like domain Bac_chlorC PF02043.12 gi|218884271|ref|YP_002428653.1| - 0.039 13.7 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacteriochlorophyll C binding protein HTH_11 PF08279.7 gi|218884271|ref|YP_002428653.1| - 0.043 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain MerR_2 PF13591.1 gi|218884271|ref|YP_002428653.1| - 0.064 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein ANT PF03374.9 gi|218884271|ref|YP_002428653.1| - 0.064 13.3 0.0 0.082 12.9 0.0 1.3 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_Tnp_IS630 PF01710.11 gi|218884271|ref|YP_002428653.1| - 0.093 12.4 0.3 0.14 11.8 0.2 1.5 1 1 0 1 1 1 0 Transposase HTH_28 PF13518.1 gi|218884271|ref|YP_002428653.1| - 0.095 12.7 0.9 0.42 10.6 0.1 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain SNase PF00565.12 gi|218884272|ref|YP_002428654.1| - 4.9e-07 29.9 0.0 1.4e-06 28.5 0.0 1.8 1 0 0 1 1 1 1 Staphylococcal nuclease homologue SKG6 PF08693.5 gi|218884272|ref|YP_002428654.1| - 0.16 11.3 0.0 0.16 11.3 0.0 2.4 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Ribosomal_S25 PF03297.10 gi|218884273|ref|YP_002428655.1| - 7.8e-06 25.8 0.1 9.1e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 S25 ribosomal protein EAP30 PF04157.11 gi|218884273|ref|YP_002428655.1| - 0.0085 15.2 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_24 PF13412.1 gi|218884273|ref|YP_002428655.1| - 0.039 13.3 1.1 0.067 12.5 0.4 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ERF PF04404.7 gi|218884273|ref|YP_002428655.1| - 0.048 13.1 0.1 0.05 13.1 0.1 1.1 1 0 0 1 1 1 0 ERF superfamily Fe_dep_repress PF01325.14 gi|218884273|ref|YP_002428655.1| - 0.11 12.4 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S21 PF01165.15 gi|218884273|ref|YP_002428655.1| - 0.12 11.8 1.5 0.43 10.0 0.0 2.3 3 0 0 3 3 3 0 Ribosomal protein S21 DUF998 PF06197.8 gi|218884274|ref|YP_002428656.1| - 1.4e-13 50.5 16.9 1.6e-13 50.3 11.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) M16C_assoc PF08367.6 gi|218884274|ref|YP_002428656.1| - 0.13 11.0 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M16C associated SirB PF04247.7 gi|218884274|ref|YP_002428656.1| - 0.15 11.8 7.5 0.28 10.8 5.2 1.5 1 0 0 1 1 1 0 Invasion gene expression up-regulator, SirB DUF2107 PF09880.4 gi|218884274|ref|YP_002428656.1| - 0.37 10.7 6.9 0.062 13.1 1.4 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2107) DUF4149 PF13664.1 gi|218884274|ref|YP_002428656.1| - 0.87 9.6 12.4 0.64 10.1 0.2 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4149) DUF3007 PF11460.3 gi|218884274|ref|YP_002428656.1| - 3.4 7.8 6.9 0.72 9.9 1.8 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3007) DUF4131 PF13567.1 gi|218884274|ref|YP_002428656.1| - 8 5.8 8.7 12 5.2 2.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ABC2_membrane PF01061.19 gi|218884275|ref|YP_002428657.1| - 1.2e-17 63.8 22.5 1.9e-17 63.1 15.6 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|218884275|ref|YP_002428657.1| - 9.8e-05 21.5 26.8 0.00012 21.2 18.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|218884275|ref|YP_002428657.1| - 0.00033 19.5 19.9 0.00033 19.5 13.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|218884276|ref|YP_002428658.1| - 0.00022 20.3 34.1 0.00027 20.0 23.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|218884276|ref|YP_002428658.1| - 0.0019 17.4 30.7 0.0026 16.9 21.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|218884277|ref|YP_002428659.1| - 3.5e-28 98.5 0.0 1.6e-27 96.4 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|218884277|ref|YP_002428659.1| - 2.2e-10 41.0 0.1 5.3e-05 23.3 0.0 2.7 3 0 0 3 3 3 2 AAA domain DUF4162 PF13732.1 gi|218884277|ref|YP_002428659.1| - 2.6e-05 24.6 0.2 0.00013 22.3 0.2 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA PF00004.24 gi|218884277|ref|YP_002428659.1| - 0.0014 18.7 0.8 0.066 13.4 0.2 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|218884277|ref|YP_002428659.1| - 0.0028 16.8 1.0 1.3 8.1 0.0 2.5 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|218884277|ref|YP_002428659.1| - 0.0032 17.1 0.2 0.054 13.1 0.1 2.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|218884277|ref|YP_002428659.1| - 0.0038 17.5 1.0 0.0038 17.5 0.7 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|218884277|ref|YP_002428659.1| - 0.0082 15.6 0.1 0.017 14.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|218884277|ref|YP_002428659.1| - 0.013 14.9 0.2 0.084 12.2 0.2 2.2 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|218884277|ref|YP_002428659.1| - 0.013 14.9 0.1 0.05 13.0 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KdpD PF02702.12 gi|218884277|ref|YP_002428659.1| - 0.018 14.1 1.5 0.068 12.3 0.2 2.3 2 1 1 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain NB-ARC PF00931.17 gi|218884277|ref|YP_002428659.1| - 0.02 13.7 0.1 3.1 6.5 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_5 PF07728.9 gi|218884277|ref|YP_002428659.1| - 0.049 13.3 0.1 0.28 10.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|218884277|ref|YP_002428659.1| - 0.072 12.8 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|218884277|ref|YP_002428659.1| - 0.11 12.0 0.0 0.19 11.1 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF2442 PF10387.4 gi|218884277|ref|YP_002428659.1| - 0.13 12.3 0.0 0.47 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2442) AAA_30 PF13604.1 gi|218884277|ref|YP_002428659.1| - 0.13 11.7 0.0 0.36 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain MrpF_PhaF PF04066.8 gi|218884278|ref|YP_002428660.1| - 1.6e-05 25.0 3.8 1.6e-05 25.0 2.6 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PhaG_MnhG_YufB PF03334.9 gi|218884279|ref|YP_002428661.1| - 1.2e-21 76.5 10.5 1.5e-21 76.1 7.3 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit FAM163 PF15069.1 gi|218884279|ref|YP_002428661.1| - 0.012 16.1 0.1 0.016 15.7 0.1 1.2 1 0 0 1 1 1 0 FAM163 family ExoD PF06055.7 gi|218884279|ref|YP_002428661.1| - 0.13 11.3 5.0 0.2 10.7 3.5 1.3 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD Virul_fac_BrkB PF03631.10 gi|218884279|ref|YP_002428661.1| - 0.52 9.6 10.0 0.58 9.4 6.9 1.1 1 0 0 1 1 1 0 Virulence factor BrkB DUF2583 PF10762.4 gi|218884279|ref|YP_002428661.1| - 0.53 10.4 4.9 0.23 11.6 1.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) YrhK PF14145.1 gi|218884279|ref|YP_002428661.1| - 0.71 9.5 5.4 0.16 11.6 0.7 2.1 2 0 0 2 2 2 0 YrhK-like protein DUF4040 PF13244.1 gi|218884280|ref|YP_002428662.1| - 9.6e-11 41.5 8.9 2.7e-10 40.0 6.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4305 PF14146.1 gi|218884280|ref|YP_002428662.1| - 0.32 10.7 11.2 2.4 7.9 0.7 3.6 3 1 1 4 4 4 0 Domain of unknown function (DUF4305) DUF4234 PF14018.1 gi|218884280|ref|YP_002428662.1| - 2.5 7.9 9.4 19 5.0 6.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) Abi PF02517.11 gi|218884280|ref|YP_002428662.1| - 2.9 8.1 6.6 5.9 7.0 1.5 2.3 1 1 1 2 2 2 0 CAAX protease self-immunity Oxidored_q3 PF00499.15 gi|218884280|ref|YP_002428662.1| - 3 7.6 10.9 0.16 11.7 3.4 1.7 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4231 PF14015.1 gi|218884280|ref|YP_002428662.1| - 5.5 7.0 9.3 0.63 10.0 2.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) DUF2107 PF09880.4 gi|218884280|ref|YP_002428662.1| - 8.8 6.2 9.2 0.33 10.8 0.6 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2107) MnhB PF04039.8 gi|218884281|ref|YP_002428663.1| - 7.9e-18 64.6 14.1 7.9e-18 64.6 9.8 2.4 3 0 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF221 PF02714.10 gi|218884281|ref|YP_002428663.1| - 0.2 10.5 7.5 0.51 9.1 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF221 Oxidored_q2 PF00420.19 gi|218884282|ref|YP_002428664.1| - 8.2e-19 67.0 3.1 1e-18 66.6 2.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2191 PF09957.4 gi|218884282|ref|YP_002428664.1| - 0.04 13.7 0.3 0.092 12.5 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) MNHE PF01899.11 gi|218884283|ref|YP_002428665.1| - 1.5e-31 109.1 0.8 1.7e-31 108.9 0.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|218884284|ref|YP_002428666.1| - 3.5e-46 157.6 18.7 3.5e-46 157.6 12.9 2.8 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|218884284|ref|YP_002428666.1| - 0.0087 15.6 1.7 0.0087 15.6 1.2 3.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PAPS_reduct PF01507.14 gi|218884285|ref|YP_002428667.1| - 3.7e-32 111.5 0.0 5.2e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|218884285|ref|YP_002428667.1| - 0.0039 16.1 0.1 0.0055 15.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase AFOR_C PF01314.13 gi|218884286|ref|YP_002428668.1| - 4.7e-116 387.6 0.1 5.6e-116 387.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|218884286|ref|YP_002428668.1| - 8.4e-77 257.0 0.1 1.3e-76 256.5 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CTP-dep_RFKase PF01982.11 gi|218884287|ref|YP_002428669.1| - 1.8e-28 98.5 0.4 2.1e-28 98.3 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Antitoxin-MazE PF04014.13 gi|218884287|ref|YP_002428669.1| - 0.011 15.4 0.2 0.035 13.8 0.0 2.0 2 0 0 2 2 2 0 Antidote-toxin recognition MazE SAM_adeno_trans PF01887.11 gi|218884289|ref|YP_002428671.1| - 3.9e-94 314.5 0.0 4.3e-94 314.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Glyco_hydro_57 PF03065.10 gi|218884290|ref|YP_002428672.1| - 6.4e-92 308.2 0.3 9.5e-92 307.6 0.2 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2223 PF09985.4 gi|218884290|ref|YP_002428672.1| - 3.8e-60 203.0 0.5 8e-60 202.0 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) Rifin_STEVOR PF02009.11 gi|218884290|ref|YP_002428672.1| - 0.008 15.8 0.2 0.013 15.1 0.1 1.2 1 0 0 1 1 1 1 Rifin/stevor family TMEM154 PF15102.1 gi|218884290|ref|YP_002428672.1| - 0.055 13.1 14.2 0.11 12.1 9.9 1.5 1 0 0 1 1 1 0 TMEM154 protein family MGC-24 PF05283.6 gi|218884290|ref|YP_002428672.1| - 0.51 10.0 22.2 0.95 9.2 15.4 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) Mucin PF01456.12 gi|218884290|ref|YP_002428672.1| - 2.8 7.6 48.6 5.5 6.7 33.7 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein MFS_1 PF07690.11 gi|218884291|ref|YP_002428673.1| - 1.8e-26 92.6 45.0 2.6e-18 65.8 18.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|218884291|ref|YP_002428673.1| - 3.5e-06 25.4 16.8 7.3e-06 24.3 11.7 1.4 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|218884291|ref|YP_002428673.1| - 0.001 18.8 1.0 0.001 18.8 0.7 4.8 5 0 0 5 5 5 1 MFS_1 like family MscL PF01741.13 gi|218884291|ref|YP_002428673.1| - 0.24 11.5 4.7 7.6 6.7 0.3 2.7 2 0 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL PDDEXK_1 PF12705.2 gi|218884292|ref|YP_002428674.1| - 2.2e-10 40.3 0.4 3.3e-08 33.2 0.1 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.1 gi|218884292|ref|YP_002428674.1| - 0.00059 19.8 0.1 0.0011 18.9 0.1 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3799 PF12684.2 gi|218884292|ref|YP_002428674.1| - 0.0086 15.4 0.4 0.64 9.3 0.0 2.2 1 1 1 2 2 2 2 PDDEXK-like domain of unknown function (DUF3799) Tox-REase-9 PF15650.1 gi|218884292|ref|YP_002428674.1| - 0.014 15.5 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 9 HSDR_N_2 PF13588.1 gi|218884292|ref|YP_002428674.1| - 0.036 13.8 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) CYTH PF01928.16 gi|218884293|ref|YP_002428675.1| - 1.3e-22 80.3 0.2 1.6e-22 80.0 0.1 1.0 1 0 0 1 1 1 1 CYTH domain Hist_deacetyl PF00850.14 gi|218884294|ref|YP_002428676.1| - 2.8e-51 174.6 0.0 3.5e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DHH PF01368.15 gi|218884295|ref|YP_002428677.1| - 3e-07 30.1 0.0 6.7e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 DHH family CDP-OH_P_transf PF01066.16 gi|218884296|ref|YP_002428678.1| - 8e-16 58.1 13.4 1.8e-15 57.0 9.3 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AP_endonuc_2 PF01261.19 gi|218884297|ref|YP_002428679.1| - 1.1e-17 64.0 0.0 1.4e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|218884297|ref|YP_002428679.1| - 0.039 12.9 0.0 0.071 12.1 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE NUDIX PF00293.23 gi|218884298|ref|YP_002428680.1| - 3.9e-17 62.1 0.0 5.5e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain ATP-synt_D PF01813.12 gi|218884300|ref|YP_002428682.1| - 2.3e-34 118.7 11.8 3e-34 118.3 8.2 1.2 1 0 0 1 1 1 1 ATP synthase subunit D DUF61 PF01886.11 gi|218884301|ref|YP_002428683.1| - 2.7e-30 104.8 0.4 3.2e-30 104.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Flavokinase PF01687.12 gi|218884301|ref|YP_002428683.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Riboflavin kinase ATP-synt_B PF00430.13 gi|218884302|ref|YP_002428684.1| - 0.0012 18.6 13.8 0.0024 17.6 1.8 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|218884302|ref|YP_002428684.1| - 0.0052 16.5 6.9 0.029 14.1 3.8 2.0 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|218884302|ref|YP_002428684.1| - 0.072 12.3 13.7 0.1 11.8 1.9 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|218884302|ref|YP_002428684.1| - 0.081 12.9 9.7 3 7.9 6.7 2.1 1 1 0 1 1 1 0 DivIVA protein Pinin_SDK_memA PF04696.8 gi|218884302|ref|YP_002428684.1| - 0.11 12.0 5.1 0.14 11.7 3.5 1.2 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region vATP-synt_E PF01991.13 gi|218884302|ref|YP_002428684.1| - 0.37 10.0 12.5 0.091 12.0 5.7 1.8 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit DUF883 PF05957.8 gi|218884302|ref|YP_002428684.1| - 0.78 10.1 5.1 1.1 9.7 0.4 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Orthopox_B11R PF07033.6 gi|218884302|ref|YP_002428684.1| - 1.1 8.8 6.7 0.84 9.1 2.4 2.0 1 1 1 2 2 2 0 Orthopoxvirus B11R protein LUC7 PF03194.10 gi|218884302|ref|YP_002428684.1| - 1.7 8.0 6.9 1.9 7.9 4.8 1.0 1 0 0 1 1 1 0 LUC7 N_terminus V-ATPase_G PF03179.10 gi|218884302|ref|YP_002428684.1| - 9.9 6.5 15.9 41 4.5 11.0 1.8 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit V_ATPase_I PF01496.14 gi|218884303|ref|YP_002428685.1| - 4.1e-54 183.6 25.3 5.9e-29 100.5 7.0 3.9 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family MscL PF01741.13 gi|218884303|ref|YP_002428685.1| - 0.012 15.6 0.6 0.012 15.6 0.4 2.1 2 0 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL NPV_P10 PF05531.7 gi|218884303|ref|YP_002428685.1| - 0.052 13.8 0.0 0.19 12.0 0.0 1.9 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein HAUS5 PF14817.1 gi|218884303|ref|YP_002428685.1| - 0.085 11.3 1.6 0.12 10.8 1.1 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Prefoldin PF02996.12 gi|218884303|ref|YP_002428685.1| - 0.48 10.0 4.6 2.5 7.7 0.0 3.0 3 0 0 3 3 3 0 Prefoldin subunit ATP-synt_C PF00137.16 gi|218884304|ref|YP_002428686.1| - 5.2e-14 51.9 19.8 1.3e-09 37.7 2.9 2.1 2 0 0 2 2 2 2 ATP synthase subunit C ExoD PF06055.7 gi|218884304|ref|YP_002428686.1| - 0.15 11.1 5.5 0.068 12.2 1.6 1.9 1 1 1 2 2 2 0 Exopolysaccharide synthesis, ExoD vATP-synt_E PF01991.13 gi|218884305|ref|YP_002428687.1| - 1.2e-14 54.0 15.8 2.6e-14 52.9 10.9 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|218884305|ref|YP_002428687.1| - 0.00068 19.4 7.9 0.0058 16.3 5.5 2.0 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|218884305|ref|YP_002428687.1| - 0.013 14.7 18.5 0.27 10.4 8.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|218884305|ref|YP_002428687.1| - 0.023 14.7 13.5 0.15 12.0 2.3 2.6 1 1 1 2 2 2 0 DivIVA protein DUF3226 PF11536.3 gi|218884305|ref|YP_002428687.1| - 0.023 14.1 0.3 0.027 13.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3226) ATP-synt_B PF00430.13 gi|218884305|ref|YP_002428687.1| - 0.078 12.7 18.7 2.2 8.0 3.4 2.4 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF2007 PF09413.5 gi|218884305|ref|YP_002428687.1| - 0.094 12.5 3.2 0.42 10.4 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF2007) RE_Alw26IDE PF09665.5 gi|218884305|ref|YP_002428687.1| - 1.4 7.5 7.6 1.7 7.2 5.3 1.1 1 0 0 1 1 1 0 Type II restriction endonuclease (RE_Alw26IDE) SBP_bac_7 PF03480.8 gi|218884305|ref|YP_002428687.1| - 2.1 7.3 5.6 3.8 6.5 3.9 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Atrophin-1 PF03154.10 gi|218884305|ref|YP_002428687.1| - 8.7 4.3 10.1 11 4.0 7.0 1.0 1 0 0 1 1 1 0 Atrophin-1 family ATP-synt_ab PF00006.20 gi|218884308|ref|YP_002428690.1| - 7.8e-86 287.0 0.0 1.1e-85 286.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|218884308|ref|YP_002428690.1| - 1.8e-16 60.5 0.6 4e-16 59.5 0.4 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|218884308|ref|YP_002428690.1| - 6.3e-16 58.3 3.2 1.7e-15 56.9 2.2 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_19 PF13245.1 gi|218884308|ref|YP_002428690.1| - 0.056 13.2 0.2 0.45 10.3 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain Peptidase_M23 PF01551.17 gi|218884308|ref|YP_002428690.1| - 0.085 12.9 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 Peptidase family M23 DUF2085 PF09858.4 gi|218884308|ref|YP_002428690.1| - 0.2 11.7 0.0 0.44 10.6 0.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) ATP-synt_ab PF00006.20 gi|218884309|ref|YP_002428691.1| - 4.3e-60 202.8 0.0 6.1e-60 202.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|218884309|ref|YP_002428691.1| - 3.6e-12 46.7 0.1 6.2e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain HAS-barrel PF09378.5 gi|218884309|ref|YP_002428691.1| - 0.002 18.0 0.5 0.0055 16.5 0.4 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab_N PF02874.18 gi|218884309|ref|YP_002428691.1| - 0.015 15.4 0.6 0.029 14.5 0.4 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, beta-barrel domain ATP_bind_4 PF01902.12 gi|218884310|ref|YP_002428692.1| - 6.9e-54 182.5 0.0 8.3e-54 182.2 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|218884310|ref|YP_002428692.1| - 0.0096 15.2 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Skp1_POZ PF03931.10 gi|218884311|ref|YP_002428693.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Skp1 family, tetramerisation domain HGTP_anticodon PF03129.15 gi|218884312|ref|YP_002428694.1| - 1e-20 73.4 0.1 1.9e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|218884312|ref|YP_002428694.1| - 3.6e-18 65.7 1.2 9.4e-18 64.3 0.9 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|218884312|ref|YP_002428694.1| - 6.5e-06 25.9 0.0 1.7e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Phage_integrase PF00589.17 gi|218884315|ref|YP_002428697.1| - 1.5e-36 125.6 0.1 2.2e-36 125.1 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|218884315|ref|YP_002428697.1| - 2.1e-09 37.4 1.1 8.4e-08 32.2 0.1 2.9 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|218884315|ref|YP_002428697.1| - 8.1e-09 35.7 0.0 1.8e-06 28.1 0.0 2.6 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|218884315|ref|YP_002428697.1| - 1.6e-06 27.1 0.3 2.4e-06 26.5 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|218884315|ref|YP_002428697.1| - 5.3e-05 22.5 0.5 9.5e-05 21.7 0.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|218884315|ref|YP_002428697.1| - 0.00039 20.1 0.3 0.00064 19.4 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Phage_int_SAM_3 PF14659.1 gi|218884315|ref|YP_002428697.1| - 0.0096 16.1 0.0 0.028 14.6 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain UPF0547 PF10571.4 gi|218884315|ref|YP_002428697.1| - 0.047 13.3 0.5 0.08 12.6 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Hypoth_Ymh PF09509.5 gi|218884315|ref|YP_002428697.1| - 0.074 12.6 0.0 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (Hypoth_ymh) zf-NADH-PPase PF09297.6 gi|218884315|ref|YP_002428697.1| - 0.38 10.3 2.1 8.3 6.0 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DHH PF01368.15 gi|218884316|ref|YP_002428698.1| - 2.4e-10 40.2 0.0 3.4e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|218884316|ref|YP_002428698.1| - 3.1e-08 33.2 0.0 6.2e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain DUF2258 PF10015.4 gi|218884317|ref|YP_002428699.1| - 1e-24 86.1 1.7 1e-24 86.1 1.1 2.3 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2258) LEA_1 PF03760.10 gi|218884317|ref|YP_002428699.1| - 0.21 11.7 2.5 0.6 10.2 1.7 1.8 1 0 0 1 1 1 0 Late embryogenesis abundant (LEA) group 1 CWC25 PF12542.3 gi|218884317|ref|YP_002428699.1| - 0.41 11.1 2.4 0.27 11.7 0.4 1.5 2 0 0 2 2 2 0 Pre-mRNA splicing factor Acetyltransf_4 PF13420.1 gi|218884319|ref|YP_002428701.1| - 0.032 14.1 0.1 0.045 13.6 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4096 PF13340.1 gi|218884319|ref|YP_002428701.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) bact-PGI_C PF10432.4 gi|218884321|ref|YP_002428703.1| - 3.9e-32 111.1 0.0 5.5e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|218884321|ref|YP_002428703.1| - 6e-07 29.1 0.0 1.8e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 SIS domain PAP2 PF01569.16 gi|218884322|ref|YP_002428704.1| - 2.7e-21 75.5 0.7 2.7e-21 75.5 0.5 2.6 3 1 0 3 3 3 1 PAP2 superfamily PAP2_C PF14360.1 gi|218884322|ref|YP_002428704.1| - 0.0026 17.9 0.8 0.0026 17.9 0.6 2.4 2 1 0 2 2 2 1 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|218884322|ref|YP_002428704.1| - 0.0031 17.0 0.3 0.0031 17.0 0.2 2.4 3 1 0 3 3 3 1 PAP2 superfamily VPEP PF07589.6 gi|218884322|ref|YP_002428704.1| - 0.022 14.6 0.3 0.022 14.6 0.2 3.4 3 0 0 3 3 3 0 PEP-CTERM motif DUF1652 PF07865.6 gi|218884322|ref|YP_002428704.1| - 0.045 13.3 0.1 6.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) MerC PF03203.9 gi|218884322|ref|YP_002428704.1| - 7.4 6.9 15.3 0.92 9.8 0.4 3.4 2 1 2 4 4 4 0 MerC mercury resistance protein UbiA PF01040.13 gi|218884323|ref|YP_002428705.1| - 7.8e-33 113.7 14.1 1.2e-32 113.1 9.7 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family PAP2 PF01569.16 gi|218884323|ref|YP_002428705.1| - 0.0039 16.8 4.1 0.012 15.2 2.9 1.9 1 1 0 1 1 1 1 PAP2 superfamily DsbB PF02600.11 gi|218884323|ref|YP_002428705.1| - 1.4 8.6 6.7 0.77 9.5 1.9 2.3 2 0 0 2 2 2 0 Disulfide bond formation protein DsbB HAD_2 PF13419.1 gi|218884324|ref|YP_002428706.1| - 1.2e-27 97.2 0.0 1.4e-27 97.0 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|218884324|ref|YP_002428706.1| - 4.3e-14 53.4 0.0 4.5e-10 40.2 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|218884324|ref|YP_002428706.1| - 1.4e-09 38.4 0.0 1.7e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|218884324|ref|YP_002428706.1| - 2.7e-09 36.5 0.0 4.3e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.2 gi|218884324|ref|YP_002428706.1| - 0.00063 19.4 0.0 0.015 14.9 0.0 2.2 2 0 0 2 2 2 1 Acid Phosphatase Put_Phosphatase PF06888.7 gi|218884324|ref|YP_002428706.1| - 0.029 13.5 0.0 0.28 10.3 0.0 2.1 2 1 0 2 2 2 0 Putative Phosphatase DUF3895 PF13034.1 gi|218884324|ref|YP_002428706.1| - 0.036 13.5 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) Hydrolase_3 PF08282.7 gi|218884324|ref|YP_002428706.1| - 0.051 13.1 0.0 1.4 8.3 0.0 2.5 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|218884325|ref|YP_002428707.1| - 6e-21 75.1 0.0 2.6e-12 46.8 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|218884325|ref|YP_002428707.1| - 2.8e-05 23.5 0.0 0.00013 21.3 0.0 1.8 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|218884325|ref|YP_002428707.1| - 0.00025 21.2 0.3 0.082 13.0 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|218884325|ref|YP_002428707.1| - 0.017 15.5 0.0 0.46 10.8 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|218884325|ref|YP_002428707.1| - 0.079 13.1 0.5 3 8.0 0.0 2.9 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|218884325|ref|YP_002428707.1| - 0.088 12.7 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.9 gi|218884326|ref|YP_002428708.1| - 1.3e-23 83.8 1.7 1.2e-07 31.8 0.0 4.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|218884326|ref|YP_002428708.1| - 3.1e-16 60.0 0.1 1.4e-08 35.0 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|218884326|ref|YP_002428708.1| - 2.5e-10 39.8 0.7 0.00048 19.1 0.1 4.0 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|218884326|ref|YP_002428708.1| - 1.9e-09 37.4 1.6 6.7e-08 32.4 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|218884326|ref|YP_002428708.1| - 1.5e-08 34.9 6.9 3.9e-05 23.9 0.8 3.7 4 1 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|218884326|ref|YP_002428708.1| - 1.1e-06 27.7 0.1 0.024 13.5 0.0 3.3 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|218884326|ref|YP_002428708.1| - 2.2e-06 27.0 0.4 0.025 13.6 0.3 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|218884326|ref|YP_002428708.1| - 3.9e-06 25.5 0.7 0.0029 16.1 0.1 2.7 3 0 0 3 3 3 2 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|218884326|ref|YP_002428708.1| - 5.4e-05 22.8 0.2 0.2 11.2 0.0 3.4 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|218884326|ref|YP_002428708.1| - 5.6e-05 23.2 0.6 0.0042 17.1 0.0 3.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|218884326|ref|YP_002428708.1| - 8.4e-05 22.3 0.8 0.0086 15.8 0.0 3.5 4 0 0 4 4 4 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|218884326|ref|YP_002428708.1| - 0.00026 21.1 0.0 0.042 14.0 0.0 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|218884326|ref|YP_002428708.1| - 0.00064 19.7 0.3 8.7 6.3 0.0 3.3 3 0 0 3 3 3 0 NADH(P)-binding GIDA PF01134.17 gi|218884326|ref|YP_002428708.1| - 0.00081 18.3 2.3 0.12 11.2 0.1 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|218884326|ref|YP_002428708.1| - 0.00082 18.5 0.6 0.0059 15.7 0.0 2.2 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.1 gi|218884326|ref|YP_002428708.1| - 0.0034 16.3 0.4 0.09 11.6 0.1 2.9 3 1 1 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|218884326|ref|YP_002428708.1| - 0.022 13.8 0.3 0.059 12.4 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.13 gi|218884326|ref|YP_002428708.1| - 0.14 11.7 0.3 6.9 6.2 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|218884326|ref|YP_002428708.1| - 0.28 10.5 2.5 4.8 6.5 0.1 3.0 3 1 1 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4_11 PF13247.1 gi|218884327|ref|YP_002428709.1| - 1.8e-23 82.3 9.4 1.8e-23 82.3 6.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|218884327|ref|YP_002428709.1| - 8.7e-17 61.2 62.8 4.4e-08 33.3 8.9 3.4 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218884327|ref|YP_002428709.1| - 5.4e-13 48.9 26.4 3e-07 30.6 5.1 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|218884327|ref|YP_002428709.1| - 1e-12 47.0 38.9 3.5e-06 26.3 2.6 5.7 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218884327|ref|YP_002428709.1| - 1.8e-12 46.8 26.1 7.9e-06 25.5 8.8 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218884327|ref|YP_002428709.1| - 9.9e-12 44.0 33.2 4.1e-06 26.3 0.9 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|218884327|ref|YP_002428709.1| - 2.3e-11 43.0 38.6 2.8e-05 23.8 1.9 4.9 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|218884327|ref|YP_002428709.1| - 2.9e-10 39.9 41.9 0.0014 19.0 2.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|218884327|ref|YP_002428709.1| - 1.4e-08 34.6 23.9 7e-05 22.7 5.4 3.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218884327|ref|YP_002428709.1| - 4.7e-08 32.7 35.4 0.0011 19.1 1.6 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|218884327|ref|YP_002428709.1| - 1.2e-07 31.9 21.9 0.0026 18.0 0.6 4.3 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|218884327|ref|YP_002428709.1| - 7.7e-07 29.4 21.5 0.0039 17.5 1.3 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218884327|ref|YP_002428709.1| - 1.1e-06 29.3 25.0 0.056 14.1 1.3 4.8 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|218884327|ref|YP_002428709.1| - 2.2e-05 24.2 29.4 0.0017 18.1 7.9 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218884327|ref|YP_002428709.1| - 0.00034 21.1 22.1 0.0032 17.9 4.1 3.2 2 1 0 2 2 2 2 4Fe-4S single cluster domain GF_recep_IV PF14843.1 gi|218884327|ref|YP_002428709.1| - 0.11 12.0 15.0 0.99 9.0 7.0 2.3 1 1 1 2 2 2 0 Growth factor receptor domain IV Oxidored_q1 PF00361.15 gi|218884328|ref|YP_002428710.1| - 7.6e-32 110.6 24.6 7.6e-32 110.6 17.1 3.0 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|218884329|ref|YP_002428711.1| - 1.4e-36 126.1 31.2 1.4e-36 126.1 21.6 2.7 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdh PF00146.16 gi|218884331|ref|YP_002428713.1| - 1.2e-13 50.8 23.1 1.4e-13 50.5 16.0 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|218884332|ref|YP_002428714.1| - 8e-40 136.5 0.0 1.1e-28 100.0 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|218884332|ref|YP_002428714.1| - 2.1e-18 66.4 0.0 4.7e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|218884332|ref|YP_002428714.1| - 4.3e-15 55.4 3.8 5.4e-10 38.6 0.0 3.5 1 1 2 3 3 3 3 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|218884333|ref|YP_002428715.1| - 1.2e-14 53.1 24.1 2.3e-09 36.4 3.1 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218884333|ref|YP_002428715.1| - 2.4e-14 53.4 25.5 6.9e-12 45.5 6.6 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218884333|ref|YP_002428715.1| - 7.6e-14 51.7 19.4 2.8e-10 40.2 6.4 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218884333|ref|YP_002428715.1| - 9.5e-14 50.5 23.5 5.4e-08 32.3 2.3 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218884333|ref|YP_002428715.1| - 6e-11 42.0 6.7 6e-11 42.0 4.6 2.2 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|218884333|ref|YP_002428715.1| - 8.8e-11 41.4 26.6 1.8e-09 37.2 7.5 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218884333|ref|YP_002428715.1| - 1.4e-08 35.3 13.6 0.00051 20.7 3.7 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|218884333|ref|YP_002428715.1| - 9.9e-08 31.9 19.7 4.4e-06 26.6 6.8 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218884333|ref|YP_002428715.1| - 1e-07 31.4 4.1 1e-07 31.4 2.8 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218884333|ref|YP_002428715.1| - 5.1e-07 30.0 13.3 0.00045 20.5 0.3 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|218884333|ref|YP_002428715.1| - 1.8e-06 28.1 9.7 0.0013 19.0 0.1 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218884333|ref|YP_002428715.1| - 6.5e-05 23.4 8.4 0.00095 19.6 0.2 3.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|218884333|ref|YP_002428715.1| - 7.4e-05 22.7 1.7 7.4e-05 22.7 1.2 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|218884333|ref|YP_002428715.1| - 0.0027 18.1 20.1 0.0086 16.5 6.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|218884333|ref|YP_002428715.1| - 0.0033 17.7 1.1 0.0033 17.7 0.7 3.5 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|218884333|ref|YP_002428715.1| - 0.011 15.6 7.3 0.35 10.7 0.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Zn-ribbon_8 PF09723.5 gi|218884333|ref|YP_002428715.1| - 1.1 9.2 0.0 1.1 9.2 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain Oxidored_q6 PF01058.17 gi|218884334|ref|YP_002428716.1| - 2.3e-21 75.7 0.0 2.8e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Auto_anti-p27 PF06677.7 gi|218884335|ref|YP_002428717.1| - 0.12 12.2 0.2 0.24 11.2 0.2 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GATase_6 PF13522.1 gi|218884336|ref|YP_002428718.1| - 2.4e-07 30.7 0.0 3.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|218884336|ref|YP_002428718.1| - 9.1e-07 27.8 0.0 1.3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|218884336|ref|YP_002428718.1| - 0.056 12.1 0.0 0.083 11.5 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NAD_kinase PF01513.16 gi|218884337|ref|YP_002428719.1| - 5.1e-46 156.7 0.1 5.9e-46 156.5 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|218884337|ref|YP_002428719.1| - 0.018 14.4 0.9 0.051 13.0 0.1 2.1 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Metallophos PF00149.23 gi|218884338|ref|YP_002428720.1| - 1.5e-17 63.6 0.1 2.1e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|218884338|ref|YP_002428720.1| - 0.00096 19.0 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain 3HCDH PF00725.17 gi|218884339|ref|YP_002428721.1| - 0.13 12.7 0.0 0.39 11.1 0.0 1.7 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DZR PF12773.2 gi|218884340|ref|YP_002428722.1| - 0.13 12.0 0.3 0.22 11.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Sp100 PF03172.8 gi|218884341|ref|YP_002428723.1| - 0.064 13.2 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 Sp100 domain GDYXXLXY PF14345.1 gi|218884342|ref|YP_002428724.1| - 0.13 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 GDYXXLXY protein Cpn60_TCP1 PF00118.19 gi|218884344|ref|YP_002428726.1| - 3e-166 553.8 11.6 3.4e-166 553.6 8.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Phe_tRNA-synt_N PF02912.13 gi|218884344|ref|YP_002428726.1| - 0.056 13.1 2.0 14 5.4 0.1 3.3 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain RNA_pol_Rpb6 PF01192.17 gi|218884345|ref|YP_002428727.1| - 1.2e-14 53.7 0.0 2.1e-13 49.8 0.0 2.0 1 1 1 2 2 2 2 RNA polymerase Rpb6 Peptidase_M50 PF02163.17 gi|218884346|ref|YP_002428728.1| - 5.1e-17 61.4 9.0 4.5e-16 58.3 6.2 2.4 1 1 0 1 1 1 1 Peptidase family M50 Topoisom_bac PF01131.15 gi|218884347|ref|YP_002428729.1| - 4.5e-107 358.3 0.1 5.6e-107 358.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|218884347|ref|YP_002428729.1| - 7.7e-11 41.8 0.0 4.5e-10 39.4 0.0 2.4 3 0 0 3 3 3 1 Toprim domain Pyrophosphatase PF00719.14 gi|218884349|ref|YP_002428731.1| - 5.9e-63 210.9 0.1 6.7e-63 210.8 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Prefoldin PF02996.12 gi|218884350|ref|YP_002428732.1| - 0.0037 16.8 4.6 0.17 11.5 0.0 2.4 2 1 0 2 2 2 2 Prefoldin subunit FliJ PF02050.11 gi|218884350|ref|YP_002428732.1| - 0.0063 16.5 3.0 0.0089 16.0 0.9 1.8 2 0 0 2 2 2 1 Flagellar FliJ protein Syntaxin PF00804.20 gi|218884350|ref|YP_002428732.1| - 0.027 14.6 3.5 1.9 8.7 0.6 2.1 2 0 0 2 2 2 0 Syntaxin PcfJ PF14284.1 gi|218884350|ref|YP_002428732.1| - 0.057 12.9 0.9 0.42 10.0 0.1 2.0 2 0 0 2 2 2 0 PcfJ-like protein Nup54 PF13874.1 gi|218884350|ref|YP_002428732.1| - 0.096 12.3 1.8 0.29 10.7 0.3 2.0 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 THOC7 PF05615.8 gi|218884350|ref|YP_002428732.1| - 0.14 12.4 4.7 0.11 12.8 0.7 2.0 2 0 0 2 2 2 0 Tho complex subunit 7 DUF4201 PF13870.1 gi|218884350|ref|YP_002428732.1| - 0.15 11.4 6.3 0.34 10.3 3.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Corona_S2 PF01601.11 gi|218884350|ref|YP_002428732.1| - 0.25 9.3 0.9 0.31 9.0 0.6 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein BLOC1_2 PF10046.4 gi|218884350|ref|YP_002428732.1| - 1.4 9.1 8.1 3.8 7.6 0.4 2.2 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|218884350|ref|YP_002428732.1| - 2.1 7.9 6.2 8.3 5.9 4.3 1.9 1 1 0 1 1 1 0 IncA protein AAA_23 PF13476.1 gi|218884350|ref|YP_002428732.1| - 3.2 8.0 6.1 4.9 7.4 4.3 1.3 1 0 0 1 1 1 0 AAA domain CoA_binding PF02629.14 gi|218884351|ref|YP_002428733.1| - 5.6e-30 103.7 1.5 5.4e-29 100.5 0.3 2.3 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.1 gi|218884351|ref|YP_002428733.1| - 1.2e-15 57.2 0.0 2e-14 53.3 0.0 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.14 gi|218884351|ref|YP_002428733.1| - 9.1e-15 54.5 0.0 1.6e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.1 gi|218884351|ref|YP_002428733.1| - 3.4e-07 30.4 0.0 2.2e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|218884351|ref|YP_002428733.1| - 0.08 13.4 0.0 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|218884352|ref|YP_002428734.1| - 6.8e-60 201.9 0.4 1.2e-59 201.1 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|218884352|ref|YP_002428734.1| - 1.4e-20 73.4 0.3 2.3e-20 72.7 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|218884352|ref|YP_002428734.1| - 2.5e-10 39.9 0.4 2.4e-09 36.7 0.3 2.3 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|218884352|ref|YP_002428734.1| - 2.9e-06 26.9 0.2 6.1e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|218884352|ref|YP_002428734.1| - 1.5e-05 24.8 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|218884352|ref|YP_002428734.1| - 0.0029 17.1 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp PF02222.17 gi|218884352|ref|YP_002428734.1| - 0.023 14.0 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|218884352|ref|YP_002428734.1| - 0.12 11.0 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon Resolvase PF00239.16 gi|218884353|ref|YP_002428735.1| - 6.6e-22 77.8 0.8 1e-21 77.2 0.6 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218884353|ref|YP_002428735.1| - 4.7e-13 49.1 0.3 4.7e-13 49.1 0.2 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218884353|ref|YP_002428735.1| - 1.8e-07 30.5 0.4 1.4e-06 27.7 0.3 2.5 2 0 0 2 2 2 1 MerR family regulatory protein MerR_1 PF13411.1 gi|218884353|ref|YP_002428735.1| - 7.9e-06 25.5 0.1 1.7e-05 24.4 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|218884353|ref|YP_002428735.1| - 2.9e-05 23.5 0.1 7.8e-05 22.1 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|218884353|ref|YP_002428735.1| - 9.6e-05 22.2 0.4 0.00061 19.6 0.0 2.2 2 0 0 2 2 2 1 Transposase HTH_31 PF13560.1 gi|218884353|ref|YP_002428735.1| - 0.00021 21.4 1.0 0.025 14.7 0.1 2.6 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|218884353|ref|YP_002428735.1| - 0.00027 20.8 0.4 0.00097 19.0 0.2 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Exc PF07825.6 gi|218884353|ref|YP_002428735.1| - 0.00096 18.8 0.2 0.0019 17.9 0.1 1.5 1 0 0 1 1 1 1 Excisionase-like protein HTH_3 PF01381.17 gi|218884353|ref|YP_002428735.1| - 0.0013 18.4 0.1 0.0038 17.0 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix HTH_29 PF13551.1 gi|218884353|ref|YP_002428735.1| - 0.009 16.1 0.3 0.031 14.4 0.1 1.9 1 1 1 2 2 2 1 Winged helix-turn helix Phage_AlpA PF05930.7 gi|218884353|ref|YP_002428735.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_26 PF13443.1 gi|218884353|ref|YP_002428735.1| - 0.013 15.6 0.0 0.035 14.3 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF1323 PF07037.6 gi|218884353|ref|YP_002428735.1| - 0.02 15.0 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) HTH_Tnp_ISL3 PF13542.1 gi|218884353|ref|YP_002428735.1| - 0.04 13.1 0.1 0.33 10.1 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Phage_CI_repr PF07022.8 gi|218884353|ref|YP_002428735.1| - 0.071 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain MerR_2 PF13591.1 gi|218884353|ref|YP_002428735.1| - 0.081 12.5 0.0 0.23 11.0 0.0 1.8 1 0 0 1 1 1 0 MerR HTH family regulatory protein B12-binding PF02310.14 gi|218884353|ref|YP_002428735.1| - 0.13 12.1 0.0 2.4 8.0 0.0 2.1 1 1 1 2 2 2 0 B12 binding domain OrfB_Zn_ribbon PF07282.6 gi|218884354|ref|YP_002428736.1| - 2.9e-19 68.4 0.0 5.6e-19 67.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Flavin_Reduct PF01613.13 gi|218884355|ref|YP_002428737.1| - 4.5e-31 107.7 0.0 5.3e-31 107.5 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Pribosyltran PF00156.22 gi|218884356|ref|YP_002428738.1| - 5.6e-20 71.3 0.0 8.1e-20 70.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|218884356|ref|YP_002428738.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PNP_UDP_1 PF01048.15 gi|218884357|ref|YP_002428739.1| - 6.4e-48 162.7 0.0 7.5e-48 162.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3165 PF11364.3 gi|218884359|ref|YP_002428741.1| - 0.081 13.0 4.7 0.059 13.5 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3165) Polysacc_synt_3 PF13440.1 gi|218884359|ref|YP_002428741.1| - 0.12 11.7 10.3 0.15 11.4 7.1 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein O-antigen_lig PF13425.1 gi|218884359|ref|YP_002428741.1| - 2.9 7.8 11.1 6.5 6.7 7.7 1.6 1 1 0 1 1 1 0 O-antigen ligase like membrane protein DUF4131 PF13567.1 gi|218884359|ref|YP_002428741.1| - 5.1 6.4 8.2 15 4.9 5.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Tetraspannin PF00335.15 gi|218884359|ref|YP_002428741.1| - 9.7 5.3 10.6 12 5.0 7.4 1.2 1 0 0 1 1 1 0 Tetraspanin family RimK PF08443.6 gi|218884360|ref|YP_002428742.1| - 6.3e-28 97.5 0.0 8.4e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|218884360|ref|YP_002428742.1| - 2.8e-08 33.1 0.0 4.4e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|218884360|ref|YP_002428742.1| - 2e-07 30.9 0.0 3.1e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|218884360|ref|YP_002428742.1| - 7.1e-07 29.2 0.0 1.7e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Ins134_P3_kin PF05770.6 gi|218884360|ref|YP_002428742.1| - 1.2e-05 24.5 0.1 0.0031 16.5 0.0 2.2 1 1 0 2 2 2 2 Inositol 1, 3, 4-trisphosphate 5/6-kinase ATPgrasp_Ter PF15632.1 gi|218884360|ref|YP_002428742.1| - 0.00027 19.7 0.0 0.015 14.0 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon MTBP_mid PF14919.1 gi|218884360|ref|YP_002428742.1| - 0.15 10.7 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 MDM2-binding FhuF PF06276.7 gi|218884361|ref|YP_002428743.1| - 0.034 14.0 0.0 0.62 10.0 0.0 2.1 2 0 0 2 2 2 0 Ferric iron reductase FhuF-like transporter Radical_SAM PF04055.16 gi|218884362|ref|YP_002428744.1| - 1.3e-14 54.7 0.1 2e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|218884362|ref|YP_002428744.1| - 1.9e-06 28.0 0.0 4.7e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|218884362|ref|YP_002428744.1| - 1.8e-05 24.7 0.0 3.9e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_C11 PF03415.9 gi|218884363|ref|YP_002428745.1| - 0.053 12.5 0.0 0.067 12.1 0.0 1.1 1 0 0 1 1 1 0 Clostripain family tRNA-synt_1 PF00133.17 gi|218884364|ref|YP_002428746.1| - 7.5e-115 384.2 0.0 9.2e-114 380.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|218884364|ref|YP_002428746.1| - 1e-30 106.5 1.2 2.2e-30 105.4 0.9 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|218884364|ref|YP_002428746.1| - 1.8e-28 99.2 4.3 6.2e-14 51.4 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|218884364|ref|YP_002428746.1| - 2.1e-07 30.4 0.0 3.8e-05 23.0 0.0 2.4 1 1 1 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 zinc_ribbon_2 PF13240.1 gi|218884364|ref|YP_002428746.1| - 0.033 13.6 4.1 0.12 11.8 0.7 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|218884364|ref|YP_002428746.1| - 0.12 12.1 0.9 20 5.0 0.1 3.1 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|218884364|ref|YP_002428746.1| - 1.5 8.0 7.5 0.13 11.5 0.5 2.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|218884364|ref|YP_002428746.1| - 1.5 8.0 4.5 22 4.3 0.0 3.5 2 1 2 4 4 4 0 Transcription factor zinc-finger PHP_C PF13263.1 gi|218884365|ref|YP_002428747.1| - 3.1e-16 58.6 0.1 4.8e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|218884365|ref|YP_002428747.1| - 6.4e-15 55.3 0.0 1.3e-14 54.4 0.0 1.5 1 1 0 1 1 1 1 PHP domain Metallophos PF00149.23 gi|218884366|ref|YP_002428748.1| - 2.1e-09 37.0 0.6 2e-08 33.8 0.4 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|218884366|ref|YP_002428748.1| - 3e-08 33.6 0.1 1.4e-07 31.5 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HD PF01966.17 gi|218884368|ref|YP_002428750.1| - 5.6e-12 45.7 0.7 1.1e-11 44.7 0.2 1.7 2 0 0 2 2 2 1 HD domain DUF1886 PF09171.5 gi|218884369|ref|YP_002428751.1| - 1e-44 152.4 0.0 1.3e-44 152.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) DUF3536 PF12055.3 gi|218884369|ref|YP_002428751.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3536) Nitro_FeMo-Co PF02579.12 gi|218884370|ref|YP_002428752.1| - 1.8e-05 24.7 0.0 2.4e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF367 PF04034.8 gi|218884370|ref|YP_002428752.1| - 0.074 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF367) T2SE_Nter PF05157.10 gi|218884371|ref|YP_002428753.1| - 0.045 13.7 0.0 0.058 13.4 0.0 1.0 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain DUF2283 PF10049.4 gi|218884372|ref|YP_002428754.1| - 4.6e-06 26.3 0.7 6.2e-06 25.9 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF3876 PF12992.2 gi|218884372|ref|YP_002428754.1| - 0.085 12.8 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) Nol1_Nop2_Fmu PF01189.12 gi|218884374|ref|YP_002428756.1| - 9.1e-34 117.1 0.0 2e-32 112.7 0.0 2.0 2 0 0 2 2 2 1 NOL1/NOP2/sun family Methyltransf_18 PF12847.2 gi|218884374|ref|YP_002428756.1| - 3.9e-08 33.8 0.0 6.4e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.15 gi|218884374|ref|YP_002428756.1| - 1.3e-06 27.9 0.0 2.7e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.1 gi|218884374|ref|YP_002428756.1| - 8.9e-06 25.3 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|218884374|ref|YP_002428756.1| - 2.4e-05 24.3 0.0 6e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_5 PF01795.14 gi|218884374|ref|YP_002428756.1| - 0.0069 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 MraW methylase family YedD PF13987.1 gi|218884374|ref|YP_002428756.1| - 0.0071 15.9 0.0 0.021 14.3 0.0 1.8 1 0 0 1 1 1 1 YedD-like protein Cons_hypoth95 PF03602.10 gi|218884374|ref|YP_002428756.1| - 0.036 13.4 0.0 0.075 12.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 FtsJ PF01728.14 gi|218884374|ref|YP_002428756.1| - 0.044 13.7 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_11 PF08241.7 gi|218884374|ref|YP_002428756.1| - 0.06 13.8 0.0 11 6.6 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|218884374|ref|YP_002428756.1| - 0.08 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase zf-ribbon_3 PF13248.1 gi|218884375|ref|YP_002428757.1| - 4.7e-05 22.4 3.4 9.1e-05 21.5 2.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|218884375|ref|YP_002428757.1| - 0.00027 20.6 1.0 0.017 14.8 0.0 2.4 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|218884375|ref|YP_002428757.1| - 0.0017 18.1 0.3 0.0028 17.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|218884375|ref|YP_002428757.1| - 0.0057 16.3 4.9 0.0057 16.3 0.1 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-C4_Topoisom PF01396.14 gi|218884375|ref|YP_002428757.1| - 0.053 13.0 2.7 0.37 10.3 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger PIN PF01850.16 gi|218884375|ref|YP_002428757.1| - 0.071 13.4 0.1 0.093 13.0 0.1 1.3 1 0 0 1 1 1 0 PIN domain Cript PF10235.4 gi|218884375|ref|YP_002428757.1| - 0.083 13.2 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT ADK_lid PF05191.9 gi|218884375|ref|YP_002428757.1| - 0.19 11.3 1.4 1 9.0 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.1 gi|218884375|ref|YP_002428757.1| - 0.28 10.8 2.4 16 5.3 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|218884375|ref|YP_002428757.1| - 0.56 9.7 5.9 2 7.9 4.1 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|218884375|ref|YP_002428757.1| - 0.61 9.9 2.4 1.1 9.1 1.6 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.1 gi|218884375|ref|YP_002428757.1| - 0.81 8.9 2.8 6.9 5.9 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|218884375|ref|YP_002428757.1| - 1.3 8.8 4.7 11 5.7 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NAD_kinase PF01513.16 gi|218884376|ref|YP_002428758.1| - 1e-23 83.5 0.6 1.3e-23 83.2 0.4 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|218884376|ref|YP_002428758.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Met_10 PF02475.11 gi|218884377|ref|YP_002428759.1| - 1.3e-43 148.9 0.0 1.8e-43 148.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.8 gi|218884377|ref|YP_002428759.1| - 4.7e-06 25.9 0.0 6.8e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|218884377|ref|YP_002428759.1| - 5.9e-06 26.2 0.0 8.7e-05 22.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218884377|ref|YP_002428759.1| - 0.00068 20.1 0.0 0.0019 18.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DNA_methylase PF00145.12 gi|218884377|ref|YP_002428759.1| - 0.058 12.5 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase TRM PF02005.11 gi|218884377|ref|YP_002428759.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.4 1 1 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase PCMT PF01135.14 gi|218884378|ref|YP_002428760.1| - 1.1e-68 230.8 0.0 1.3e-68 230.6 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|218884378|ref|YP_002428760.1| - 3.8e-12 46.0 0.0 4.9e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218884378|ref|YP_002428760.1| - 4.1e-10 40.2 0.0 6.5e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|218884378|ref|YP_002428760.1| - 1.6e-09 37.8 0.0 2.4e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|218884378|ref|YP_002428760.1| - 5.4e-06 27.1 0.0 7.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|218884378|ref|YP_002428760.1| - 1.2e-05 24.9 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|218884378|ref|YP_002428760.1| - 9.4e-05 21.5 0.0 0.00035 19.7 0.0 1.7 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|218884378|ref|YP_002428760.1| - 0.00018 21.9 0.0 0.00026 21.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|218884378|ref|YP_002428760.1| - 0.00047 20.4 0.0 0.0008 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|218884378|ref|YP_002428760.1| - 0.00072 19.2 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|218884378|ref|YP_002428760.1| - 0.00083 18.4 0.0 0.0012 17.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.1 gi|218884378|ref|YP_002428760.1| - 0.0029 17.3 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|218884378|ref|YP_002428760.1| - 0.0041 16.2 0.0 0.0048 16.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|218884378|ref|YP_002428760.1| - 0.017 14.5 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_28 PF02636.12 gi|218884378|ref|YP_002428760.1| - 0.038 13.3 0.0 0.05 12.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.15 gi|218884378|ref|YP_002428760.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase F420_oxidored PF03807.12 gi|218884378|ref|YP_002428760.1| - 0.13 12.6 0.1 0.3 11.5 0.1 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent XPG_I PF00867.13 gi|218884379|ref|YP_002428761.1| - 8.7e-26 89.8 0.0 1.5e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|218884379|ref|YP_002428761.1| - 2.2e-20 72.8 0.0 3.8e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|218884379|ref|YP_002428761.1| - 0.00057 20.0 1.3 0.0012 19.0 0.1 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HTH_20 PF12840.2 gi|218884380|ref|YP_002428762.1| - 5.7e-05 22.8 0.0 6.8e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|218884380|ref|YP_002428762.1| - 0.028 14.1 0.1 0.037 13.8 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DNAJ_related PF12339.3 gi|218884380|ref|YP_002428762.1| - 0.075 12.9 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 DNA-J related protein TrmB PF01978.14 gi|218884380|ref|YP_002428762.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2492 PF10678.4 gi|218884380|ref|YP_002428762.1| - 0.12 12.5 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2492) FUR PF01475.14 gi|218884380|ref|YP_002428762.1| - 0.13 12.2 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family AAA PF00004.24 gi|218884381|ref|YP_002428763.1| - 2.4e-99 328.6 0.0 1.1e-49 168.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|218884381|ref|YP_002428763.1| - 4.5e-21 74.6 0.1 1.1e-20 73.3 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|218884381|ref|YP_002428763.1| - 1.2e-15 57.1 0.0 5.9e-07 28.7 0.0 3.4 3 1 1 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|218884381|ref|YP_002428763.1| - 3.8e-15 56.3 0.0 2.8e-06 27.4 0.0 3.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|218884381|ref|YP_002428763.1| - 2.2e-14 53.3 0.7 1.4e-06 28.1 0.0 3.7 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|218884381|ref|YP_002428763.1| - 5.9e-14 52.3 0.0 6.7e-08 32.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|218884381|ref|YP_002428763.1| - 3.7e-13 49.7 0.6 2.5e-06 27.6 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|218884381|ref|YP_002428763.1| - 8e-13 49.2 0.0 2e-06 28.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|218884381|ref|YP_002428763.1| - 1.2e-11 44.7 0.0 1.1e-05 25.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|218884381|ref|YP_002428763.1| - 1.3e-11 44.4 0.0 9.4e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|218884381|ref|YP_002428763.1| - 1.7e-11 43.5 0.0 0.00013 20.8 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|218884381|ref|YP_002428763.1| - 8.2e-11 41.3 0.0 0.0001 21.4 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin Arch_ATPase PF01637.13 gi|218884381|ref|YP_002428763.1| - 3.3e-09 36.8 2.2 0.0049 16.6 0.3 4.2 2 2 2 4 4 4 3 Archaeal ATPase AAA_28 PF13521.1 gi|218884381|ref|YP_002428763.1| - 1.4e-08 34.8 0.0 0.0016 18.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|218884381|ref|YP_002428763.1| - 1.5e-08 34.2 0.4 0.0019 17.6 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|218884381|ref|YP_002428763.1| - 1.6e-08 34.6 0.0 0.0026 17.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|218884381|ref|YP_002428763.1| - 4.4e-08 33.4 0.0 0.0014 18.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|218884381|ref|YP_002428763.1| - 1.5e-07 30.8 0.2 0.013 14.6 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|218884381|ref|YP_002428763.1| - 2e-07 30.6 1.5 0.01 15.5 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain DUF815 PF05673.8 gi|218884381|ref|YP_002428763.1| - 2.7e-07 29.7 0.0 0.02 13.8 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|218884381|ref|YP_002428763.1| - 1.1e-06 28.2 7.5 0.096 12.0 0.1 4.2 2 2 1 4 4 4 2 AAA domain NACHT PF05729.7 gi|218884381|ref|YP_002428763.1| - 1.2e-06 28.2 0.2 0.19 11.3 0.0 3.8 4 0 0 4 4 4 2 NACHT domain AAA_24 PF13479.1 gi|218884381|ref|YP_002428763.1| - 1.3e-06 28.1 0.1 0.023 14.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|218884381|ref|YP_002428763.1| - 3.3e-06 26.3 0.5 0.22 10.5 0.0 3.4 2 1 1 3 3 3 2 KaiC ABC_tran PF00005.22 gi|218884381|ref|YP_002428763.1| - 3.3e-06 27.4 0.0 0.076 13.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|218884381|ref|YP_002428763.1| - 5.2e-06 26.0 0.0 0.068 12.6 0.0 3.3 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|218884381|ref|YP_002428763.1| - 5.4e-06 26.0 0.0 0.046 13.3 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|218884381|ref|YP_002428763.1| - 5.8e-06 26.3 0.0 0.032 14.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|218884381|ref|YP_002428763.1| - 1.3e-05 24.2 0.1 0.018 13.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|218884381|ref|YP_002428763.1| - 1.8e-05 24.5 0.0 0.0099 15.5 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein UPF0079 PF02367.12 gi|218884381|ref|YP_002428763.1| - 2.3e-05 23.9 0.1 0.7 9.5 0.0 3.4 3 0 0 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 PhoH PF02562.11 gi|218884381|ref|YP_002428763.1| - 0.00011 21.4 0.3 0.36 10.0 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein SKI PF01202.17 gi|218884381|ref|YP_002428763.1| - 0.0002 21.2 0.0 0.39 10.5 0.0 2.4 2 0 0 2 2 2 2 Shikimate kinase NB-ARC PF00931.17 gi|218884381|ref|YP_002428763.1| - 0.00041 19.3 0.0 0.42 9.4 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain NTPase_1 PF03266.10 gi|218884381|ref|YP_002428763.1| - 0.00049 19.8 0.1 2.6 7.7 0.0 3.6 2 1 1 3 3 3 0 NTPase DUF2075 PF09848.4 gi|218884381|ref|YP_002428763.1| - 0.00052 19.1 0.0 0.041 12.8 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|218884381|ref|YP_002428763.1| - 0.0013 17.6 0.0 0.032 13.1 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|218884381|ref|YP_002428763.1| - 0.0024 17.4 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|218884381|ref|YP_002428763.1| - 0.0034 16.9 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|218884381|ref|YP_002428763.1| - 0.0057 15.3 0.0 0.77 8.3 0.0 2.6 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein ResIII PF04851.10 gi|218884381|ref|YP_002428763.1| - 0.0062 16.3 0.0 0.96 9.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|218884381|ref|YP_002428763.1| - 0.0075 15.2 0.0 9.8 5.0 0.0 3.0 2 1 1 3 3 3 0 KAP family P-loop domain CDC48_2 PF02933.12 gi|218884381|ref|YP_002428763.1| - 0.012 15.2 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 PduV-EutP PF10662.4 gi|218884381|ref|YP_002428763.1| - 0.013 15.0 0.0 3 7.3 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_11 PF13086.1 gi|218884381|ref|YP_002428763.1| - 0.014 14.9 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AFG1_ATPase PF03969.11 gi|218884381|ref|YP_002428763.1| - 0.015 14.1 0.2 1.7 7.3 0.0 2.4 2 1 0 2 2 2 0 AFG1-like ATPase AAA_10 PF12846.2 gi|218884381|ref|YP_002428763.1| - 0.019 14.4 0.8 5.4 6.3 0.0 3.2 3 1 0 3 3 3 0 AAA-like domain Guanylate_kin PF00625.16 gi|218884381|ref|YP_002428763.1| - 0.028 13.8 0.1 15 4.9 0.0 3.6 2 2 2 4 4 3 0 Guanylate kinase SRPRB PF09439.5 gi|218884381|ref|YP_002428763.1| - 0.03 13.5 0.0 6.2 5.9 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KTI12 PF08433.5 gi|218884381|ref|YP_002428763.1| - 0.031 13.5 0.1 0.8 8.8 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DAP3 PF10236.4 gi|218884381|ref|YP_002428763.1| - 0.033 13.1 0.0 3 6.6 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.1 gi|218884381|ref|YP_002428763.1| - 0.052 13.1 0.0 3.4 7.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|218884381|ref|YP_002428763.1| - 0.059 12.5 0.0 6.3 5.9 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin2 PF13189.1 gi|218884381|ref|YP_002428763.1| - 0.094 12.6 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_23 PF13476.1 gi|218884381|ref|YP_002428763.1| - 0.11 12.8 0.1 14 5.9 0.0 2.6 3 0 0 3 3 2 0 AAA domain PSI_PsaE PF02427.12 gi|218884381|ref|YP_002428763.1| - 0.12 11.7 0.2 0.27 10.6 0.1 1.5 1 0 0 1 1 1 0 Photosystem I reaction centre subunit IV / PsaE AAA_21 PF13304.1 gi|218884381|ref|YP_002428763.1| - 0.13 12.2 2.1 8.9 6.1 0.0 3.3 2 2 1 3 3 3 0 AAA domain Vps4_C PF09336.5 gi|218884381|ref|YP_002428763.1| - 0.15 11.9 0.0 0.55 10.1 0.0 2.0 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain cobW PF02492.14 gi|218884381|ref|YP_002428763.1| - 0.22 10.9 0.5 22 4.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain HTH_45 PF14947.1 gi|218884382|ref|YP_002428764.1| - 2.2e-05 24.1 0.3 2.6e-05 23.9 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix ABC_tran PF00005.22 gi|218884383|ref|YP_002428765.1| - 1.8e-34 118.9 0.0 2.8e-34 118.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218884383|ref|YP_002428765.1| - 4.2e-07 30.2 0.0 0.0038 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|218884383|ref|YP_002428765.1| - 0.00037 20.4 0.0 0.00075 19.4 0.0 1.6 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|218884383|ref|YP_002428765.1| - 0.00048 19.4 0.2 0.0058 15.8 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|218884383|ref|YP_002428765.1| - 0.0067 16.5 0.1 0.014 15.4 0.1 1.6 1 0 0 1 1 1 1 TOBE domain AAA_17 PF13207.1 gi|218884383|ref|YP_002428765.1| - 0.01 16.6 0.0 0.024 15.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|218884383|ref|YP_002428765.1| - 0.02 14.9 0.1 0.068 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|218884383|ref|YP_002428765.1| - 0.028 13.9 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|218884383|ref|YP_002428765.1| - 0.029 14.5 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_10 PF12846.2 gi|218884383|ref|YP_002428765.1| - 0.04 13.3 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|218884383|ref|YP_002428765.1| - 0.042 13.7 0.0 0.086 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|218884383|ref|YP_002428765.1| - 0.042 12.5 0.0 0.059 12.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|218884383|ref|YP_002428765.1| - 0.045 13.8 0.1 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|218884383|ref|YP_002428765.1| - 0.075 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|218884383|ref|YP_002428765.1| - 0.088 12.1 0.0 0.53 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|218884383|ref|YP_002428765.1| - 0.1 11.6 0.0 0.34 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|218884383|ref|YP_002428765.1| - 0.12 12.6 0.0 0.36 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|218884383|ref|YP_002428765.1| - 0.17 11.0 0.0 0.29 10.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KH_5 PF13184.1 gi|218884385|ref|YP_002428767.1| - 2.6e-11 43.1 0.8 4e-11 42.5 0.1 1.6 2 0 0 2 2 2 1 NusA-like KH domain TruD PF01142.13 gi|218884386|ref|YP_002428768.1| - 2.4e-42 144.9 0.0 2.4e-35 121.9 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|218884387|ref|YP_002428769.1| - 2.9e-45 152.6 0.0 3.2e-45 152.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF1610 PF07754.6 gi|218884388|ref|YP_002428770.1| - 1.5e-11 44.1 17.9 1e-06 28.7 4.5 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|218884388|ref|YP_002428770.1| - 0.00011 21.9 11.5 0.024 14.4 8.8 2.6 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|218884388|ref|YP_002428770.1| - 0.00051 19.1 17.2 0.016 14.4 1.9 3.2 1 1 3 4 4 4 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|218884388|ref|YP_002428770.1| - 0.00067 19.2 7.9 0.0057 16.2 0.1 2.2 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DUF1272 PF06906.6 gi|218884388|ref|YP_002428770.1| - 0.0044 16.8 9.3 5.6 6.8 6.4 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) tRNA-synt_1f PF01921.13 gi|218884388|ref|YP_002428770.1| - 0.0099 14.5 0.3 0.0099 14.5 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) PolC_DP2 PF03833.8 gi|218884388|ref|YP_002428770.1| - 0.011 13.4 3.0 0.011 13.4 2.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 HypA PF01155.14 gi|218884388|ref|YP_002428770.1| - 0.011 15.4 1.9 0.011 15.4 1.3 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|218884388|ref|YP_002428770.1| - 0.013 15.1 15.6 0.096 12.4 2.3 3.7 2 2 1 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_4 PF13717.1 gi|218884388|ref|YP_002428770.1| - 0.028 14.0 10.6 4.6 7.0 0.0 4.0 4 0 0 4 4 4 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|218884388|ref|YP_002428770.1| - 0.042 13.8 5.8 0.94 9.5 0.5 2.3 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zinc_ribbon_5 PF13719.1 gi|218884388|ref|YP_002428770.1| - 0.066 12.7 11.5 4.5 6.9 0.0 3.9 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|218884388|ref|YP_002428770.1| - 0.096 12.2 0.2 0.096 12.2 0.2 3.6 3 1 0 3 3 3 0 zinc-ribbon domain PSCyt3 PF07627.6 gi|218884388|ref|YP_002428770.1| - 0.1 12.5 0.2 0.1 12.5 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1588) C1_1 PF00130.17 gi|218884388|ref|YP_002428770.1| - 0.12 12.1 7.9 0.32 10.7 1.3 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DRP PF06044.7 gi|218884388|ref|YP_002428770.1| - 0.13 11.2 2.9 0.14 11.1 2.0 1.2 1 0 0 1 1 1 0 Dam-replacing family zf-B_box PF00643.19 gi|218884388|ref|YP_002428770.1| - 0.17 11.8 12.4 1 9.3 1.4 2.5 1 1 1 2 2 2 0 B-box zinc finger zf-Mss51 PF13824.1 gi|218884388|ref|YP_002428770.1| - 0.18 11.6 9.5 0.99 9.3 1.2 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rpr2 PF04032.11 gi|218884388|ref|YP_002428770.1| - 0.18 11.6 9.3 0.12 12.2 3.1 2.4 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Sgf11 PF08209.6 gi|218884388|ref|YP_002428770.1| - 0.2 11.0 14.3 0.87 8.9 0.1 3.8 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) DUF2321 PF10083.4 gi|218884388|ref|YP_002428770.1| - 0.22 10.9 3.4 0.32 10.4 2.4 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Spt4 PF06093.8 gi|218884388|ref|YP_002428770.1| - 0.23 11.3 8.9 0.7 9.8 0.2 2.1 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-MYND PF01753.13 gi|218884388|ref|YP_002428770.1| - 0.28 11.0 9.0 1.5 8.7 0.1 2.4 1 1 1 2 2 2 0 MYND finger ADK_lid PF05191.9 gi|218884388|ref|YP_002428770.1| - 0.29 10.8 11.4 5 6.8 0.2 3.7 3 1 1 4 4 4 0 Adenylate kinase, active site lid NOB1_Zn_bind PF08772.6 gi|218884388|ref|YP_002428770.1| - 0.3 10.9 10.4 0.14 12.0 1.6 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF1258 PF06869.7 gi|218884388|ref|YP_002428770.1| - 0.3 10.1 1.4 0.34 9.9 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zinc-ribbons_6 PF07191.7 gi|218884388|ref|YP_002428770.1| - 0.31 10.8 8.7 6.2 6.6 6.1 2.3 1 1 0 1 1 1 0 zinc-ribbons zf-RING_5 PF14634.1 gi|218884388|ref|YP_002428770.1| - 0.34 10.6 10.4 2.8 7.7 7.2 2.2 1 1 0 1 1 1 0 zinc-RING finger domain HECT_2 PF09814.4 gi|218884388|ref|YP_002428770.1| - 0.37 9.4 1.6 0.54 8.9 1.0 1.4 1 1 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding UPF0547 PF10571.4 gi|218884388|ref|YP_002428770.1| - 0.48 10.1 21.1 0.31 10.7 10.4 3.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|218884388|ref|YP_002428770.1| - 0.51 10.0 12.1 1.9 8.2 0.6 3.7 3 1 1 4 4 4 0 Nudix N-terminal zf-C2H2_jaz PF12171.3 gi|218884388|ref|YP_002428770.1| - 0.77 9.9 0.1 0.77 9.9 0.1 2.7 3 0 0 3 3 3 0 Zinc-finger double-stranded RNA-binding DUF35_N PF12172.3 gi|218884388|ref|YP_002428770.1| - 0.85 9.6 12.3 0.24 11.3 1.5 3.3 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_recom PF13408.1 gi|218884388|ref|YP_002428770.1| - 0.96 9.7 9.6 0.38 11.0 4.6 1.7 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-AN1 PF01428.11 gi|218884388|ref|YP_002428770.1| - 0.98 9.3 12.7 4.2 7.3 2.4 3.0 2 1 1 3 3 3 0 AN1-like Zinc finger DUF164 PF02591.10 gi|218884388|ref|YP_002428770.1| - 1.2 9.0 13.7 5.8 6.8 0.0 3.8 3 1 0 3 3 3 0 Putative zinc ribbon domain zf-LITAF-like PF10601.4 gi|218884388|ref|YP_002428770.1| - 2.2 8.2 11.4 2 8.3 0.1 3.6 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain DUF2072 PF09845.4 gi|218884388|ref|YP_002428770.1| - 2.2 8.2 9.9 0.54 10.1 0.4 2.2 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) A2L_zn_ribbon PF08792.5 gi|218884388|ref|YP_002428770.1| - 2.8 7.5 17.4 4.2 6.9 4.3 3.3 2 2 0 2 2 2 0 A2L zinc ribbon domain Mu-like_Com PF10122.4 gi|218884388|ref|YP_002428770.1| - 3.1 6.9 11.5 1.4e+03 -1.7 8.0 2.8 1 1 0 1 1 1 0 Mu-like prophage protein Com TerY-C PF15616.1 gi|218884388|ref|YP_002428770.1| - 3.3 7.6 8.7 1.3 8.9 4.1 1.7 1 1 1 2 2 2 0 TerY-C metal binding domain zf-HIT PF04438.11 gi|218884388|ref|YP_002428770.1| - 3.8 7.2 17.2 0.78 9.4 4.7 2.9 2 2 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|218884388|ref|YP_002428770.1| - 4.6 7.2 17.7 47 4.0 0.0 3.9 2 1 0 2 2 2 0 Zinc ribbon domain Nop10p PF04135.7 gi|218884388|ref|YP_002428770.1| - 6.3 6.6 7.0 2.7 7.7 1.3 2.1 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.11 gi|218884388|ref|YP_002428770.1| - 6.5 6.5 8.9 4.5 7.0 0.4 2.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|218884388|ref|YP_002428770.1| - 6.6 6.6 17.4 19 5.1 0.2 3.3 2 1 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|218884388|ref|YP_002428770.1| - 8.4 5.8 19.7 3.7 6.9 3.2 3.5 1 1 2 3 3 3 0 TFIIB zinc-binding EF1_GNE PF00736.14 gi|218884389|ref|YP_002428771.1| - 8.6e-22 76.6 0.0 9.3e-22 76.5 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain TrkA_N PF02254.13 gi|218884390|ref|YP_002428772.1| - 1.7e-15 57.0 1.4 2.6e-15 56.4 0.8 1.4 1 1 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|218884390|ref|YP_002428772.1| - 1.2e-05 25.4 0.1 2.1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.16 gi|218884390|ref|YP_002428772.1| - 0.0044 16.5 2.2 0.0066 16.0 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|218884390|ref|YP_002428772.1| - 0.025 14.9 0.5 0.11 12.9 0.2 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|218884390|ref|YP_002428772.1| - 0.079 13.0 0.0 0.21 11.6 0.0 1.7 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain GFO_IDH_MocA PF01408.17 gi|218884390|ref|YP_002428772.1| - 0.11 13.0 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold MS_channel PF00924.13 gi|218884392|ref|YP_002428774.1| - 0.00018 20.9 2.2 0.00018 20.9 1.5 2.3 1 1 2 3 3 3 1 Mechanosensitive ion channel DUF150 PF02576.12 gi|218884392|ref|YP_002428774.1| - 0.00072 19.1 0.0 0.034 13.7 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised BCR, YhbC family COG0779 DUF2741 PF10890.3 gi|218884392|ref|YP_002428774.1| - 0.057 13.5 0.0 3.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2741) UPF0004 PF00919.15 gi|218884393|ref|YP_002428775.1| - 1.5e-22 79.2 0.1 3e-22 78.2 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|218884393|ref|YP_002428775.1| - 1.1e-21 77.7 0.2 4.9e-21 75.6 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.15 gi|218884393|ref|YP_002428775.1| - 0.002 17.8 0.0 0.0084 15.8 0.0 2.0 2 0 0 2 2 2 1 TRAM domain eIF-5_eIF-2B PF01873.12 gi|218884394|ref|YP_002428776.1| - 8.9e-32 109.3 0.1 1e-31 109.1 0.1 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Elf1 PF05129.8 gi|218884394|ref|YP_002428776.1| - 0.0028 17.3 0.3 0.0041 16.7 0.2 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.6 gi|218884394|ref|YP_002428776.1| - 0.015 14.9 1.2 0.027 14.1 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|218884394|ref|YP_002428776.1| - 0.033 13.9 0.3 0.056 13.2 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF678 PF05077.7 gi|218884394|ref|YP_002428776.1| - 0.046 13.7 1.5 3.6 7.6 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF678) DUF2066 PF09839.4 gi|218884394|ref|YP_002428776.1| - 0.06 12.4 0.0 0.082 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) zinc_ribbon_5 PF13719.1 gi|218884394|ref|YP_002428776.1| - 0.081 12.5 0.7 5.8 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|218884394|ref|YP_002428776.1| - 0.093 12.4 0.6 7.1 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PGAP1 PF07819.8 gi|218884394|ref|YP_002428776.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 PGAP1-like protein HypA PF01155.14 gi|218884394|ref|YP_002428776.1| - 0.16 11.6 0.5 0.23 11.1 0.3 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|218884394|ref|YP_002428776.1| - 0.25 11.3 1.5 0.71 9.8 1.1 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_S27e PF01667.12 gi|218884394|ref|YP_002428776.1| - 2.2 7.8 5.2 3.6 7.1 0.5 2.5 2 1 1 3 3 3 0 Ribosomal protein S27 Zn_ribbon_recom PF13408.1 gi|218884394|ref|YP_002428776.1| - 3.8 7.8 6.1 2.6 8.3 2.6 2.0 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF424 PF04242.8 gi|218884395|ref|YP_002428777.1| - 2.8e-21 75.3 0.1 3.4e-21 75.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NMD3 PF04981.8 gi|218884396|ref|YP_002428778.1| - 4e-34 117.7 0.9 4.8e-34 117.5 0.6 1.1 1 0 0 1 1 1 1 NMD3 family DUF2209 PF09974.4 gi|218884396|ref|YP_002428778.1| - 0.0068 16.4 0.5 0.016 15.2 0.3 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) Antitoxin-MazE PF04014.13 gi|218884396|ref|YP_002428778.1| - 0.0076 15.9 1.3 0.099 12.3 0.0 2.8 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Prok-RING_1 PF14446.1 gi|218884396|ref|YP_002428778.1| - 0.026 14.2 7.1 0.23 11.2 0.4 2.7 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|218884396|ref|YP_002428778.1| - 0.031 13.7 3.1 3 7.4 0.3 2.7 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|218884396|ref|YP_002428778.1| - 0.033 13.9 6.7 0.28 11.0 3.1 2.8 2 1 0 2 2 2 0 Double zinc ribbon FBA_3 PF08268.7 gi|218884396|ref|YP_002428778.1| - 0.04 13.6 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 F-box associated domain zf-ribbon_3 PF13248.1 gi|218884396|ref|YP_002428778.1| - 0.71 9.1 4.2 11 5.3 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|218884396|ref|YP_002428778.1| - 6.2 6.6 7.7 0.34 10.6 0.7 2.2 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) eIF-1a PF01176.14 gi|218884397|ref|YP_002428779.1| - 1.8e-19 68.9 0.4 2.4e-19 68.5 0.3 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|218884398|ref|YP_002428780.1| - 1.4e-59 200.6 0.0 2e-59 200.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|218884398|ref|YP_002428780.1| - 1.2e-06 27.7 0.0 0.00097 18.2 0.0 2.4 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|218884398|ref|YP_002428780.1| - 1.9e-06 27.8 0.3 0.0018 18.0 0.0 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|218884398|ref|YP_002428780.1| - 4.7e-05 22.6 0.1 7.8e-05 21.9 0.1 1.4 1 1 0 1 1 1 1 Protein kinase domain KH_1 PF00013.24 gi|218884399|ref|YP_002428781.1| - 6.9e-10 38.4 0.8 0.00024 20.6 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|218884399|ref|YP_002428781.1| - 1.9e-06 27.3 0.1 0.0066 16.0 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|218884399|ref|YP_002428781.1| - 0.055 13.0 0.9 4 7.0 0.2 2.6 2 0 0 2 2 2 0 KH domain EamA PF00892.15 gi|218884400|ref|YP_002428782.1| - 3.9e-17 62.4 18.8 4.6e-17 62.2 13.0 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|218884400|ref|YP_002428782.1| - 4.4e-07 30.0 13.4 4.4e-07 30.0 9.3 1.5 2 0 0 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|218884400|ref|YP_002428782.1| - 0.007 16.0 12.9 0.023 14.3 8.9 1.7 1 1 0 1 1 1 1 Triose-phosphate Transporter family Multi_Drug_Res PF00893.14 gi|218884400|ref|YP_002428782.1| - 0.035 14.5 4.3 0.035 14.5 3.0 2.2 1 1 1 2 2 2 0 Small Multidrug Resistance protein UAA PF08449.6 gi|218884400|ref|YP_002428782.1| - 0.24 10.2 11.1 0.3 9.9 7.7 1.0 1 0 0 1 1 1 0 UAA transporter family UPF0546 PF10639.4 gi|218884400|ref|YP_002428782.1| - 0.58 9.9 6.1 1.1 9.1 3.9 1.7 1 1 1 2 2 2 0 Uncharacterised protein family UPF0546 ABC2_membrane_5 PF13346.1 gi|218884400|ref|YP_002428782.1| - 1.6 7.9 21.5 0.22 10.7 11.5 1.7 1 1 1 2 2 2 0 ABC-2 family transporter protein TrkH PF02386.11 gi|218884401|ref|YP_002428783.1| - 1.3e-40 139.1 38.5 1.5e-40 138.8 16.8 2.7 1 1 2 3 3 3 2 Cation transport protein DctM PF06808.7 gi|218884402|ref|YP_002428784.1| - 3e-77 259.9 59.1 3.6e-77 259.6 40.9 1.0 1 0 0 1 1 1 1 DctM-like transporters CitMHS PF03600.11 gi|218884402|ref|YP_002428784.1| - 0.0096 14.5 53.8 0.015 13.9 28.8 2.6 1 1 1 2 2 2 2 Citrate transporter DctQ PF04290.7 gi|218884403|ref|YP_002428785.1| - 1e-18 67.3 7.0 1e-18 67.3 4.9 1.6 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporters, DctQ component DUF997 PF06196.7 gi|218884403|ref|YP_002428785.1| - 4.8 6.7 11.1 1.1 8.8 3.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF997) SBP_bac_7 PF03480.8 gi|218884404|ref|YP_002428786.1| - 6.5e-54 182.9 0.0 8.5e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 adh_short_C2 PF13561.1 gi|218884405|ref|YP_002428787.1| - 4.8e-36 124.7 0.0 5.6e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|218884405|ref|YP_002428787.1| - 2.9e-35 121.6 0.0 3.5e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|218884405|ref|YP_002428787.1| - 4.1e-15 55.9 0.0 5.6e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 KR domain Shikimate_DH PF01488.15 gi|218884405|ref|YP_002428787.1| - 0.00014 21.9 0.2 0.00025 21.1 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|218884405|ref|YP_002428787.1| - 0.0019 18.2 0.0 0.0057 16.6 0.0 1.7 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|218884405|ref|YP_002428787.1| - 0.005 15.7 0.1 0.0073 15.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein AdoHcyase_NAD PF00670.16 gi|218884405|ref|YP_002428787.1| - 0.0087 15.9 0.2 0.015 15.1 0.2 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Epimerase PF01370.16 gi|218884405|ref|YP_002428787.1| - 0.022 14.1 0.1 0.042 13.2 0.0 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|218884405|ref|YP_002428787.1| - 0.032 12.9 0.1 0.04 12.6 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family THF_DHG_CYH_C PF02882.14 gi|218884405|ref|YP_002428787.1| - 0.038 13.0 0.4 0.09 11.8 0.0 1.8 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.13 gi|218884405|ref|YP_002428787.1| - 0.11 12.0 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|218884406|ref|YP_002428788.1| - 3.7e-49 167.3 0.0 4.8e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|218884406|ref|YP_002428788.1| - 1.2e-26 93.2 0.0 1.4e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|218884406|ref|YP_002428788.1| - 1.7e-25 89.3 0.0 4.9e-25 87.7 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|218884406|ref|YP_002428788.1| - 2.7e-17 63.3 0.0 3.6e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|218884406|ref|YP_002428788.1| - 2.6e-16 59.3 2.2 4.6e-15 55.2 1.5 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|218884406|ref|YP_002428788.1| - 6.5e-15 54.7 1.3 6.1e-11 41.7 0.0 2.4 2 1 1 3 3 3 2 Male sterility protein adh_short PF00106.20 gi|218884406|ref|YP_002428788.1| - 4.7e-08 33.1 0.1 1.1e-07 31.8 0.0 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|218884406|ref|YP_002428788.1| - 0.00013 21.6 0.4 0.001 18.7 0.2 2.1 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|218884406|ref|YP_002428788.1| - 0.00063 19.0 0.5 0.0016 17.7 0.1 1.9 2 1 0 2 2 2 1 NmrA-like family Saccharop_dh PF03435.13 gi|218884406|ref|YP_002428788.1| - 0.03 13.3 0.1 0.054 12.4 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|218884406|ref|YP_002428788.1| - 0.048 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Epimerase_Csub PF13950.1 gi|218884406|ref|YP_002428788.1| - 0.15 12.0 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit HTH_10 PF04967.7 gi|218884407|ref|YP_002428789.1| - 2.1e-12 46.4 0.2 4.6e-12 45.3 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|218884407|ref|YP_002428789.1| - 0.0019 17.4 0.2 0.0031 16.8 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|218884407|ref|YP_002428789.1| - 0.0056 16.3 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family 2-Hacid_dh_C PF02826.14 gi|218884408|ref|YP_002428790.1| - 1.4e-58 196.9 0.0 2.1e-58 196.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|218884408|ref|YP_002428790.1| - 4.2e-26 90.9 0.0 6.9e-26 90.2 0.0 1.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|218884408|ref|YP_002428790.1| - 2.2e-08 34.0 0.0 6.2e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|218884408|ref|YP_002428790.1| - 8.4e-06 25.8 0.1 8.7e-05 22.6 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|218884408|ref|YP_002428790.1| - 0.00017 21.9 0.1 0.00071 19.9 0.0 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|218884408|ref|YP_002428790.1| - 0.00049 20.3 0.1 0.0061 16.7 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding Gp_dh_N PF00044.19 gi|218884408|ref|YP_002428790.1| - 0.0016 18.3 0.1 0.0028 17.6 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|218884408|ref|YP_002428790.1| - 0.0024 18.3 0.0 0.0057 17.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|218884408|ref|YP_002428790.1| - 0.0046 15.9 0.0 0.0092 14.9 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|218884408|ref|YP_002428790.1| - 0.0055 16.6 0.0 0.021 14.7 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain Shikimate_DH PF01488.15 gi|218884408|ref|YP_002428790.1| - 0.027 14.5 0.6 0.23 11.5 0.4 2.3 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PNP_UDP_1 PF01048.15 gi|218884408|ref|YP_002428790.1| - 0.044 12.7 0.0 0.12 11.3 0.0 1.7 2 0 0 2 2 2 0 Phosphorylase superfamily IlvN PF07991.7 gi|218884408|ref|YP_002428790.1| - 0.053 12.8 0.0 0.15 11.3 0.0 1.8 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|218884408|ref|YP_002428790.1| - 0.058 13.2 0.5 5.2 6.8 0.1 2.5 1 1 1 2 2 2 0 ThiF family DHDPS PF00701.17 gi|218884409|ref|YP_002428791.1| - 1.6e-53 181.2 0.0 1.7e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HSDR_N_2 PF13588.1 gi|218884409|ref|YP_002428791.1| - 0.0029 17.3 0.0 0.0053 16.5 0.0 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Radical_SAM PF04055.16 gi|218884409|ref|YP_002428791.1| - 0.097 12.8 0.0 7.8 6.6 0.0 2.7 2 1 0 2 2 2 0 Radical SAM superfamily FGGY_N PF00370.16 gi|218884410|ref|YP_002428792.1| - 6.3e-31 107.5 0.0 8.6e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|218884410|ref|YP_002428792.1| - 1.8e-09 37.5 0.0 2.4e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain tRNA-synt_2c PF01411.14 gi|218884411|ref|YP_002428793.1| - 1.5e-91 307.3 0.0 3.8e-50 170.7 0.0 2.2 1 1 0 2 2 2 2 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|218884411|ref|YP_002428793.1| - 3.9e-11 42.6 0.1 1.2e-10 41.0 0.1 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|218884411|ref|YP_002428793.1| - 0.00042 19.5 0.2 0.00074 18.6 0.1 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit CoA_binding_3 PF13727.1 gi|218884411|ref|YP_002428793.1| - 0.12 12.1 0.0 0.41 10.4 0.0 1.8 1 0 0 1 1 1 0 CoA-binding domain Ribosomal_60s PF00428.14 gi|218884412|ref|YP_002428794.1| - 1.9e-16 60.2 14.6 2.2e-16 60.0 10.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|218884412|ref|YP_002428794.1| - 0.013 15.4 5.5 0.11 12.3 0.1 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Ribonuc_L-PSP PF01042.16 gi|218884412|ref|YP_002428794.1| - 0.05 13.3 0.2 0.065 12.9 0.1 1.2 1 0 0 1 1 1 0 Endoribonuclease L-PSP Hemocyanin_C PF03723.9 gi|218884412|ref|YP_002428794.1| - 0.13 11.3 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Hemocyanin, ig-like domain SHS2_FTSA PF02491.15 gi|218884412|ref|YP_002428794.1| - 0.21 11.5 1.5 5.7 6.9 0.1 2.2 1 1 1 2 2 2 0 SHS2 domain inserted in FTSA Ribosomal_L10 PF00466.15 gi|218884413|ref|YP_002428795.1| - 3.1e-22 78.3 0.1 3.1e-22 78.3 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|218884413|ref|YP_002428795.1| - 0.17 12.2 11.8 0.4 11.0 8.2 1.8 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|218884414|ref|YP_002428796.1| - 3.5e-39 134.4 0.0 4e-39 134.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Peptidase_M17_N PF02789.12 gi|218884414|ref|YP_002428796.1| - 0.15 11.7 1.0 0.22 11.2 0.3 1.6 2 0 0 2 2 2 0 Cytosol aminopeptidase family, N-terminal domain Ribosomal_L11_N PF03946.9 gi|218884415|ref|YP_002428797.1| - 6.9e-24 83.0 0.4 1.2e-23 82.2 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|218884415|ref|YP_002428797.1| - 1.4e-21 76.3 0.8 2.2e-21 75.7 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain KGK PF08872.5 gi|218884415|ref|YP_002428797.1| - 0.092 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 KGK domain Spt5-NGN PF03439.8 gi|218884416|ref|YP_002428798.1| - 2.1e-16 59.4 0.1 3e-16 58.9 0.1 1.2 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|218884416|ref|YP_002428798.1| - 6.6e-07 28.8 0.2 9.2e-06 25.1 0.0 2.3 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|218884416|ref|YP_002428798.1| - 0.086 13.0 0.0 0.18 12.0 0.0 1.5 1 1 0 1 1 1 0 Transcription termination factor nusG SRP54 PF00448.17 gi|218884418|ref|YP_002428800.1| - 1.4e-68 230.2 0.0 1.8e-68 229.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|218884418|ref|YP_002428800.1| - 6.5e-08 32.5 4.5 6.5e-08 32.5 3.1 1.6 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|218884418|ref|YP_002428800.1| - 7.5e-06 25.5 0.1 2.8e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|218884418|ref|YP_002428800.1| - 0.00035 20.2 0.0 0.00057 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|218884418|ref|YP_002428800.1| - 0.001 18.8 0.0 0.0025 17.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|218884418|ref|YP_002428800.1| - 0.003 16.3 1.5 0.024 13.4 0.4 2.4 1 1 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|218884418|ref|YP_002428800.1| - 0.0032 17.1 0.9 0.014 15.1 0.1 2.3 1 1 1 2 2 2 1 Part of AAA domain Thymidylate_kin PF02223.12 gi|218884418|ref|YP_002428800.1| - 0.0061 15.9 0.7 0.23 10.8 0.0 2.9 3 0 0 3 3 3 1 Thymidylate kinase CbiA PF01656.18 gi|218884418|ref|YP_002428800.1| - 0.0061 15.9 5.5 0.024 14.0 1.3 2.8 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|218884418|ref|YP_002428800.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|218884418|ref|YP_002428800.1| - 0.013 14.5 0.9 0.032 13.2 0.0 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_22 PF13401.1 gi|218884418|ref|YP_002428800.1| - 0.014 15.5 0.9 0.13 12.4 0.1 2.6 2 1 0 2 2 2 0 AAA domain DAP3 PF10236.4 gi|218884418|ref|YP_002428800.1| - 0.031 13.2 0.0 0.062 12.2 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 ATP_bind_1 PF03029.12 gi|218884418|ref|YP_002428800.1| - 0.042 13.3 0.1 0.22 11.0 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|218884418|ref|YP_002428800.1| - 0.07 13.3 0.1 0.18 11.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|218884418|ref|YP_002428800.1| - 0.073 12.1 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Arf PF00025.16 gi|218884418|ref|YP_002428800.1| - 0.083 12.1 1.1 0.29 10.3 0.0 2.2 3 0 0 3 3 3 0 ADP-ribosylation factor family AAA_24 PF13479.1 gi|218884418|ref|YP_002428800.1| - 0.12 11.9 0.3 0.27 10.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|218884418|ref|YP_002428800.1| - 0.14 11.8 2.3 0.65 9.6 0.4 2.6 2 1 0 2 2 2 0 NTPase Prefoldin PF02996.12 gi|218884419|ref|YP_002428801.1| - 4.2e-13 48.9 0.1 5.3e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|218884419|ref|YP_002428801.1| - 7.7e-07 28.8 0.5 0.0063 16.2 0.1 2.1 2 0 0 2 2 2 2 Prefoldin subunit Spc7 PF08317.6 gi|218884419|ref|YP_002428801.1| - 0.054 12.1 0.5 2.1 6.9 0.0 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein IFT57 PF10498.4 gi|218884419|ref|YP_002428801.1| - 0.097 11.3 0.8 0.17 10.5 0.1 1.5 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 APG17 PF04108.7 gi|218884419|ref|YP_002428801.1| - 0.11 11.2 1.0 0.61 8.8 0.1 1.9 1 1 0 2 2 2 0 Autophagy protein Apg17 TBPIP PF07106.8 gi|218884419|ref|YP_002428801.1| - 0.22 11.0 1.8 2.7 7.5 0.4 2.0 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Ribosomal_L18ae PF01775.12 gi|218884420|ref|YP_002428802.1| - 6e-11 42.3 0.6 9.2e-11 41.7 0.4 1.3 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|218884421|ref|YP_002428803.1| - 4.5e-54 182.5 0.7 5.2e-54 182.3 0.5 1.0 1 0 0 1 1 1 1 eIF-6 family DNA_pol3_beta PF00712.14 gi|218884421|ref|YP_002428803.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III beta subunit, N-terminal domain Ribosomal_L31e PF01198.14 gi|218884422|ref|YP_002428804.1| - 3.1e-21 74.8 1.5 3.8e-21 74.5 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|218884423|ref|YP_002428805.1| - 5.4e-17 60.9 7.4 6.2e-17 60.7 5.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|218884424|ref|YP_002428806.1| - 4.7e-27 94.0 11.1 7.6e-27 93.4 7.7 1.3 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|218884424|ref|YP_002428806.1| - 0.00091 18.3 5.7 0.0011 18.0 4.0 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 ClpB_D2-small PF10431.4 gi|218884424|ref|YP_002428806.1| - 0.01 15.6 3.9 1 9.2 0.8 2.2 2 0 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein SDA1 PF05285.7 gi|218884424|ref|YP_002428806.1| - 0.05 12.8 1.5 0.052 12.8 1.0 1.1 1 0 0 1 1 1 0 SDA1 DUF2857 PF11198.3 gi|218884424|ref|YP_002428806.1| - 0.2 11.1 6.5 2.5 7.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2857) Elongin_A PF06881.6 gi|218884424|ref|YP_002428806.1| - 0.42 11.0 0.2 0.42 11.0 0.1 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription factor SIII (Elongin) subunit A Ribosomal_S19e PF01090.14 gi|218884425|ref|YP_002428807.1| - 4.6e-52 175.1 0.0 5.3e-52 174.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|218884425|ref|YP_002428807.1| - 2.8e-05 23.7 1.0 0.00043 19.9 0.7 2.3 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|218884425|ref|YP_002428807.1| - 0.0028 17.4 0.4 0.037 13.8 0.1 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|218884425|ref|YP_002428807.1| - 0.013 15.0 0.2 0.092 12.3 0.1 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus HTH_IclR PF09339.5 gi|218884425|ref|YP_002428807.1| - 0.022 14.3 0.0 1.1 8.8 0.0 2.6 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|218884425|ref|YP_002428807.1| - 0.041 13.6 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|218884425|ref|YP_002428807.1| - 0.1 12.3 0.3 1.2 8.8 0.1 2.4 3 0 0 3 3 3 0 MarR family CRS1_YhbY PF01985.16 gi|218884426|ref|YP_002428808.1| - 3.9e-15 55.6 0.8 4.9e-15 55.3 0.5 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Rpr2 PF04032.11 gi|218884427|ref|YP_002428809.1| - 4.2e-19 68.1 0.0 5.3e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Fis1_TPR_C PF14853.1 gi|218884427|ref|YP_002428809.1| - 0.16 11.8 0.2 0.16 11.8 0.2 1.6 2 0 0 2 2 2 0 Fis1 C-terminal tetratricopeptide repeat EMG1 PF03587.9 gi|218884428|ref|YP_002428810.1| - 5.8e-53 179.1 0.0 6.5e-53 179.0 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase NRDD PF13597.1 gi|218884429|ref|YP_002428811.1| - 4.6e-166 553.0 0.0 5.7e-89 298.6 0.0 2.0 2 0 0 2 2 2 2 Anaerobic ribonucleoside-triphosphate reductase Intein_splicing PF14890.1 gi|218884429|ref|YP_002428811.1| - 0.0051 15.7 0.4 0.99 8.2 0.5 2.2 2 0 0 2 2 2 2 Intein splicing domain zf-ribbon_3 PF13248.1 gi|218884429|ref|YP_002428811.1| - 0.0069 15.5 3.2 0.016 14.4 2.2 1.6 1 0 0 1 1 1 1 zinc-ribbon domain PT-HINT PF07591.6 gi|218884429|ref|YP_002428811.1| - 0.012 15.5 0.2 0.077 12.8 0.0 2.2 2 0 0 2 2 2 0 Pretoxin HINT domain DZR PF12773.2 gi|218884429|ref|YP_002428811.1| - 0.046 13.5 0.5 0.094 12.5 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF3797 PF12677.2 gi|218884429|ref|YP_002428811.1| - 0.7 9.5 4.6 0.32 10.6 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|218884429|ref|YP_002428811.1| - 0.94 9.0 6.4 6 6.4 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|218884430|ref|YP_002428812.1| - 1.1e-18 68.0 0.0 1.5e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|218884430|ref|YP_002428812.1| - 1.5e-09 37.9 0.0 3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|218884430|ref|YP_002428812.1| - 1.8e-09 37.8 0.1 3.3e-09 36.9 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Thy1 PF02511.10 gi|218884431|ref|YP_002428813.1| - 3.8e-54 182.9 0.0 5.2e-54 182.5 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Fe_dep_repress PF01325.14 gi|218884432|ref|YP_002428814.1| - 2.3e-06 27.4 0.1 5.7e-05 22.9 0.0 2.7 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|218884432|ref|YP_002428814.1| - 6.8e-06 25.7 0.1 1.4e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|218884432|ref|YP_002428814.1| - 2e-05 24.2 0.1 5.6e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|218884432|ref|YP_002428814.1| - 7.1e-05 22.3 0.0 0.00025 20.5 0.0 1.9 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|218884432|ref|YP_002428814.1| - 0.0002 21.2 0.3 0.00072 19.5 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|218884432|ref|YP_002428814.1| - 0.00035 20.3 0.1 0.00082 19.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|218884432|ref|YP_002428814.1| - 0.00059 19.3 0.0 0.0017 17.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|218884432|ref|YP_002428814.1| - 0.0025 17.4 0.0 0.006 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|218884432|ref|YP_002428814.1| - 0.0045 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|218884432|ref|YP_002428814.1| - 0.0047 16.5 0.0 0.016 14.8 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_29 PF13551.1 gi|218884432|ref|YP_002428814.1| - 0.0074 16.4 0.1 0.023 14.8 0.1 2.0 1 1 0 1 1 1 1 Winged helix-turn helix DUF4423 PF14394.1 gi|218884432|ref|YP_002428814.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF3791 PF12668.2 gi|218884432|ref|YP_002428814.1| - 0.014 14.9 0.4 0.089 12.4 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3791) PadR PF03551.9 gi|218884432|ref|YP_002428814.1| - 0.021 14.5 0.2 0.057 13.1 0.2 1.8 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|218884432|ref|YP_002428814.1| - 0.023 14.8 0.1 0.057 13.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|218884432|ref|YP_002428814.1| - 0.023 14.3 0.1 0.07 12.8 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HemN_C PF06969.11 gi|218884432|ref|YP_002428814.1| - 0.023 14.7 0.0 0.057 13.4 0.0 1.7 2 0 0 2 2 1 0 HemN C-terminal domain Rrf2 PF02082.15 gi|218884432|ref|YP_002428814.1| - 0.048 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_6 PF01418.12 gi|218884432|ref|YP_002428814.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.1 gi|218884432|ref|YP_002428814.1| - 0.054 12.8 0.1 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|218884432|ref|YP_002428814.1| - 0.065 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TetR_N PF00440.18 gi|218884432|ref|YP_002428814.1| - 0.092 12.4 0.0 0.31 10.7 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_22 PF13309.1 gi|218884432|ref|YP_002428814.1| - 0.12 12.1 0.1 0.4 10.4 0.1 1.9 2 0 0 2 2 2 0 HTH domain Mrr_N PF14338.1 gi|218884432|ref|YP_002428814.1| - 0.13 12.4 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Mrr N-terminal domain HTH_38 PF13936.1 gi|218884432|ref|YP_002428814.1| - 0.16 11.5 0.5 0.51 9.9 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain LSM PF01423.17 gi|218884435|ref|YP_002428817.1| - 0.00041 19.8 0.1 0.00097 18.6 0.1 1.7 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|218884435|ref|YP_002428817.1| - 0.0035 17.2 0.0 0.004 17.0 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain MMR_HSR1 PF01926.18 gi|218884436|ref|YP_002428818.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|218884436|ref|YP_002428818.1| - 0.053 13.0 0.1 1.3 8.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|218884436|ref|YP_002428818.1| - 0.11 11.8 0.0 0.25 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain LEF-9 PF05094.7 gi|218884436|ref|YP_002428818.1| - 0.12 10.7 0.3 0.18 10.1 0.2 1.2 1 0 0 1 1 1 0 Late expression factor 9 (LEF-9) DNA_primase_S PF01896.14 gi|218884437|ref|YP_002428819.1| - 0.00026 20.7 0.0 0.00053 19.8 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF4272 PF14094.1 gi|218884440|ref|YP_002428822.1| - 0.016 14.2 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4272) DUF4287 PF14117.1 gi|218884440|ref|YP_002428822.1| - 0.038 13.6 0.0 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) HBS1_N PF08938.5 gi|218884440|ref|YP_002428822.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 HBS1 N-terminus HTH_31 PF13560.1 gi|218884441|ref|YP_002428823.1| - 0.04 14.0 0.0 17 5.6 0.0 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|218884441|ref|YP_002428823.1| - 0.082 12.7 0.0 6.5 6.6 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix Peptidase_S46 PF10459.4 gi|218884441|ref|YP_002428823.1| - 0.1 10.9 0.0 0.14 10.5 0.0 1.1 1 0 0 1 1 1 0 Peptidase S46 GRIP PF01465.15 gi|218884441|ref|YP_002428823.1| - 0.11 12.0 0.7 17 5.0 0.0 2.7 2 0 0 2 2 2 0 GRIP domain PDGLE PF13190.1 gi|218884442|ref|YP_002428824.1| - 0.015 15.0 1.0 1.9 8.2 0.4 2.3 2 0 0 2 2 2 0 PDGLE domain DUF2244 PF10003.4 gi|218884442|ref|YP_002428824.1| - 0.03 13.6 1.2 0.045 13.1 0.8 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF2393 PF09624.5 gi|218884442|ref|YP_002428824.1| - 1.1 8.8 5.7 1.5 8.3 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) Ferric_reduct PF01794.14 gi|218884442|ref|YP_002428824.1| - 4.9 7.2 9.0 5.3 7.1 1.2 2.2 1 1 1 2 2 2 0 Ferric reductase like transmembrane component BTP PF05232.7 gi|218884442|ref|YP_002428824.1| - 9 6.1 9.4 0.87 9.3 3.5 1.5 2 0 0 2 2 2 0 Bacterial Transmembrane Pair family SfsA PF03749.8 gi|218884443|ref|YP_002428825.1| - 8.6e-41 139.7 0.0 1.1e-40 139.4 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein NERD PF08378.6 gi|218884443|ref|YP_002428825.1| - 0.056 13.7 0.0 0.084 13.1 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain ADH_N PF08240.7 gi|218884444|ref|YP_002428826.1| - 2.7e-35 120.4 1.0 4.8e-35 119.6 0.7 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|218884444|ref|YP_002428826.1| - 1.4e-06 27.8 0.0 3.3e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|218884444|ref|YP_002428826.1| - 4.1e-05 24.4 0.1 7.1e-05 23.7 0.1 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|218884444|ref|YP_002428826.1| - 0.018 14.1 0.1 0.071 12.2 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|218884444|ref|YP_002428826.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2029 PF09594.5 gi|218884445|ref|YP_002428827.1| - 0.00072 19.1 21.4 0.00072 19.1 14.9 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF2029) Glycos_transf_1 PF00534.15 gi|218884446|ref|YP_002428828.1| - 6.4e-23 81.0 0.0 1.1e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|218884446|ref|YP_002428828.1| - 8e-10 38.9 0.0 1.5e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|218884446|ref|YP_002428828.1| - 1.3e-05 24.9 0.0 2.7e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|218884446|ref|YP_002428828.1| - 5.1e-05 23.4 0.0 0.00011 22.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 dUTPase PF00692.14 gi|218884447|ref|YP_002428829.1| - 6.1e-15 54.8 0.0 1.1e-14 53.9 0.0 1.4 2 0 0 2 2 2 1 dUTPase DCD PF06559.6 gi|218884447|ref|YP_002428829.1| - 0.035 12.5 0.0 0.091 11.1 0.0 1.7 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) NTP_transferase PF00483.18 gi|218884448|ref|YP_002428830.1| - 3.4e-36 124.8 0.0 4e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|218884448|ref|YP_002428830.1| - 2.7e-12 47.0 0.0 4.1e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|218884448|ref|YP_002428830.1| - 0.0099 15.4 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Peptidase_M54 PF07998.6 gi|218884449|ref|YP_002428831.1| - 6.1e-32 110.9 0.1 6.8e-32 110.8 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|218884449|ref|YP_002428831.1| - 0.00013 21.7 0.0 0.00016 21.4 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|218884449|ref|YP_002428831.1| - 0.0017 18.4 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.8 gi|218884449|ref|YP_002428831.1| - 0.0053 16.3 0.0 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.1 gi|218884449|ref|YP_002428831.1| - 0.0098 16.4 0.0 0.013 15.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|218884449|ref|YP_002428831.1| - 0.012 15.2 0.0 0.027 13.9 0.0 1.5 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|218884449|ref|YP_002428831.1| - 0.022 13.2 0.3 0.03 12.7 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|218884449|ref|YP_002428831.1| - 0.037 12.9 0.0 0.051 12.4 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_5 PF13688.1 gi|218884449|ref|YP_002428831.1| - 0.062 13.2 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Archease PF01951.11 gi|218884450|ref|YP_002428832.1| - 6.1e-35 120.1 0.0 6.9e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF2150 PF09920.4 gi|218884450|ref|YP_002428832.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) RuBisCO_large PF00016.15 gi|218884451|ref|YP_002428833.1| - 3e-74 249.6 0.0 3.8e-74 249.3 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|218884451|ref|YP_002428833.1| - 1.7e-32 111.7 0.0 7.2e-32 109.7 0.0 1.9 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF4113 PF13438.1 gi|218884451|ref|YP_002428833.1| - 0.056 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4113) DUF697 PF05128.7 gi|218884451|ref|YP_002428833.1| - 0.08 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF697) SbcCD_C PF13558.1 gi|218884452|ref|YP_002428834.1| - 0.004 17.0 0.0 0.0056 16.5 0.0 1.2 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Peptidase_C15 PF01470.12 gi|218884453|ref|YP_002428835.1| - 2.8e-09 37.0 0.1 3.1e-09 36.9 0.1 1.0 1 0 0 1 1 1 1 Pyroglutamyl peptidase Polysacc_deac_2 PF04748.8 gi|218884453|ref|YP_002428835.1| - 0.068 12.1 0.0 0.07 12.1 0.0 1.0 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase DUF4380 PF14315.1 gi|218884454|ref|YP_002428836.1| - 5.1e-55 186.5 0.0 6.1e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) Peptidase_S8 PF00082.17 gi|218884455|ref|YP_002428837.1| - 3e-57 193.9 12.3 3.6e-57 193.6 8.5 1.1 1 0 0 1 1 1 1 Subtilase family Glyco_hydro_80 PF13647.1 gi|218884455|ref|YP_002428837.1| - 0.0016 17.7 1.8 0.0018 17.5 0.2 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 80 of chitosanase A Mrr_N PF14338.1 gi|218884455|ref|YP_002428837.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain DUF318 PF03773.8 gi|218884456|ref|YP_002428838.1| - 0.054 12.4 2.4 0.06 12.3 1.6 1.0 1 0 0 1 1 1 0 Predicted permease CcmD PF04995.9 gi|218884456|ref|YP_002428838.1| - 1.8 8.3 5.6 0.15 11.7 0.8 1.5 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) DUF3753 PF12575.3 gi|218884456|ref|YP_002428838.1| - 2.8 7.7 5.5 2.9 7.7 3.8 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3753) MTS PF05175.9 gi|218884457|ref|YP_002428839.1| - 1.9e-35 121.7 0.0 2.2e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|218884457|ref|YP_002428839.1| - 7.5e-15 54.9 0.0 1e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218884457|ref|YP_002428839.1| - 5.8e-13 48.6 0.0 7.5e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|218884457|ref|YP_002428839.1| - 6.2e-13 48.5 0.0 7.7e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|218884457|ref|YP_002428839.1| - 2.7e-10 40.7 0.0 3.7e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|218884457|ref|YP_002428839.1| - 8e-08 32.1 0.0 9.8e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|218884457|ref|YP_002428839.1| - 5.3e-06 26.8 0.0 7.3e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|218884457|ref|YP_002428839.1| - 6.3e-06 25.7 0.1 9e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.7 gi|218884457|ref|YP_002428839.1| - 4.5e-05 23.8 0.0 6.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|218884457|ref|YP_002428839.1| - 0.00055 19.5 0.0 0.00077 19.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|218884457|ref|YP_002428839.1| - 0.001 19.3 0.0 0.0014 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|218884457|ref|YP_002428839.1| - 0.0014 18.2 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|218884457|ref|YP_002428839.1| - 0.0093 15.6 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|218884457|ref|YP_002428839.1| - 0.015 14.7 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TRM PF02005.11 gi|218884457|ref|YP_002428839.1| - 0.039 12.8 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_4 PF02390.12 gi|218884457|ref|YP_002428839.1| - 0.045 12.7 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase GidB PF02527.10 gi|218884457|ref|YP_002428839.1| - 0.09 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G FmrO PF07091.6 gi|218884457|ref|YP_002428839.1| - 0.15 11.0 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) TruB_N PF01509.13 gi|218884458|ref|YP_002428840.1| - 5.8e-22 78.4 0.8 2.7e-18 66.5 0.2 3.5 2 1 0 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|218884458|ref|YP_002428840.1| - 2.2e-18 65.9 0.2 4.8e-18 64.8 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|218884458|ref|YP_002428840.1| - 6.8e-18 64.1 0.8 1.2e-17 63.4 0.5 1.4 1 0 0 1 1 1 1 PUA domain KOW PF00467.24 gi|218884459|ref|YP_002428841.1| - 5.7e-05 22.6 0.5 0.00011 21.7 0.3 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|218884459|ref|YP_002428841.1| - 5.9e-05 23.3 0.0 8.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 Cytidylate_kin2 PF13189.1 gi|218884460|ref|YP_002428842.1| - 3.8e-18 66.0 0.1 8.8e-17 61.5 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|218884460|ref|YP_002428842.1| - 1.9e-14 54.5 0.2 4.5e-14 53.3 0.1 1.6 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|218884460|ref|YP_002428842.1| - 1.7e-13 50.9 0.0 2.8e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|218884460|ref|YP_002428842.1| - 1.3e-07 31.6 0.0 4.1e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 Adenylate kinase AAA_28 PF13521.1 gi|218884460|ref|YP_002428842.1| - 1.3e-05 25.2 0.0 3.8e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|218884460|ref|YP_002428842.1| - 2.6e-05 24.4 0.0 6.3e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|218884460|ref|YP_002428842.1| - 0.00015 21.6 0.1 0.00048 20.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|218884460|ref|YP_002428842.1| - 0.00017 21.4 0.1 0.00063 19.6 0.0 1.8 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|218884460|ref|YP_002428842.1| - 0.00017 21.2 0.0 0.00029 20.5 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|218884460|ref|YP_002428842.1| - 0.0012 19.0 0.0 0.0028 17.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain PRK PF00485.13 gi|218884460|ref|YP_002428842.1| - 0.0087 15.6 0.4 0.51 9.8 0.1 2.2 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.7 gi|218884460|ref|YP_002428842.1| - 0.015 14.3 0.0 0.14 11.1 0.0 2.1 1 1 1 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus KTI12 PF08433.5 gi|218884460|ref|YP_002428842.1| - 0.022 14.0 0.0 0.032 13.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.10 gi|218884460|ref|YP_002428842.1| - 0.033 13.9 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_16 PF13191.1 gi|218884460|ref|YP_002428842.1| - 0.035 14.0 0.0 0.046 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|218884460|ref|YP_002428842.1| - 0.046 12.8 0.0 0.081 12.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|218884460|ref|YP_002428842.1| - 0.052 13.2 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|218884460|ref|YP_002428842.1| - 0.08 12.5 0.1 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|218884460|ref|YP_002428842.1| - 0.097 12.0 0.0 0.37 10.1 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase SRP54 PF00448.17 gi|218884460|ref|YP_002428842.1| - 0.097 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|218884460|ref|YP_002428842.1| - 0.13 11.7 0.1 0.92 9.0 0.0 2.0 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|218884460|ref|YP_002428842.1| - 0.14 11.1 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Ribosomal_L34e PF01199.13 gi|218884461|ref|YP_002428843.1| - 3e-32 110.6 1.3 3.3e-32 110.5 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e Zn_ribbon_recom PF13408.1 gi|218884461|ref|YP_002428843.1| - 0.039 14.2 0.2 0.069 13.4 0.1 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF4428 PF14471.1 gi|218884461|ref|YP_002428843.1| - 0.04 13.6 1.0 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.8 gi|218884461|ref|YP_002428843.1| - 0.076 12.5 0.1 0.49 9.9 0.0 2.0 2 0 0 2 2 2 0 ClpX C4-type zinc finger Gin PF10764.4 gi|218884461|ref|YP_002428843.1| - 0.13 12.0 0.3 6.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin 7tm_6 PF02949.15 gi|218884462|ref|YP_002428844.1| - 2.6e-06 26.5 0.6 3e-06 26.3 0.4 1.1 1 0 0 1 1 1 1 7tm Odorant receptor MARVEL PF01284.18 gi|218884462|ref|YP_002428844.1| - 0.03 14.1 0.2 0.03 14.1 0.2 1.7 2 1 0 2 2 2 0 Membrane-associating domain DUF3087 PF11286.3 gi|218884462|ref|YP_002428844.1| - 0.045 12.9 3.1 2.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) DUF1180 PF06679.7 gi|218884462|ref|YP_002428844.1| - 0.68 9.8 4.9 2.8 7.8 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1180) DUF454 PF04304.8 gi|218884462|ref|YP_002428844.1| - 4.5 7.3 11.2 0.86 9.6 0.2 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF454) SecY PF00344.15 gi|218884463|ref|YP_002428845.1| - 4.3e-84 282.3 22.3 6.4e-84 281.8 15.5 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|218884463|ref|YP_002428845.1| - 2.9e-10 39.4 2.7 4.2e-10 38.9 0.5 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|218884464|ref|YP_002428846.1| - 2.1e-30 105.7 1.0 2.6e-30 105.4 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L30 PF00327.15 gi|218884465|ref|YP_002428847.1| - 8.1e-14 50.9 0.0 1.6e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|218884466|ref|YP_002428848.1| - 8e-26 89.1 0.2 1.7e-25 88.0 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|218884466|ref|YP_002428848.1| - 8.6e-22 76.6 2.5 3.2e-21 74.8 0.7 2.2 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.17 gi|218884467|ref|YP_002428849.1| - 9e-34 116.2 0.2 2.4e-33 114.8 0.1 1.6 2 0 0 2 2 2 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|218884467|ref|YP_002428849.1| - 1.4e-07 31.9 0.0 2.6e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region MgsA_C PF12002.3 gi|218884467|ref|YP_002428849.1| - 0.091 12.4 0.1 4.2 7.0 0.0 2.2 2 0 0 2 2 2 0 MgsA AAA+ ATPase C terminal Ribosomal_L19e PF01280.15 gi|218884468|ref|YP_002428850.1| - 6e-52 175.3 8.0 6.8e-52 175.1 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4019 PF13211.1 gi|218884468|ref|YP_002428850.1| - 0.03 14.5 0.3 0.053 13.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) HTH_17 PF12728.2 gi|218884468|ref|YP_002428850.1| - 8 6.8 7.4 27 5.1 0.0 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L32e PF01655.13 gi|218884469|ref|YP_002428851.1| - 6.6e-33 113.0 0.0 7.6e-33 112.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|218884470|ref|YP_002428852.1| - 5.4e-26 90.9 7.4 5.9e-17 61.9 0.5 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|218884471|ref|YP_002428853.1| - 6e-26 90.7 0.0 7.7e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|218884472|ref|YP_002428854.1| - 4.9e-17 61.0 2.4 5.1e-17 60.9 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|218884472|ref|YP_002428854.1| - 0.0091 15.8 0.3 0.01 15.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf-FPG_IleRS PF06827.9 gi|218884472|ref|YP_002428854.1| - 0.0098 15.5 2.0 0.016 14.7 1.4 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|218884472|ref|YP_002428854.1| - 0.011 15.5 2.3 0.013 15.2 1.6 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-P11 PF03854.9 gi|218884472|ref|YP_002428854.1| - 0.046 13.2 0.2 0.063 12.7 0.1 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF2039 PF10217.4 gi|218884472|ref|YP_002428854.1| - 0.096 12.7 1.1 0.11 12.5 0.8 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) DUF1451 PF07295.6 gi|218884472|ref|YP_002428854.1| - 0.1 12.3 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|218884472|ref|YP_002428854.1| - 0.16 11.4 0.7 0.25 10.8 0.5 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|218884472|ref|YP_002428854.1| - 0.18 11.8 3.6 0.67 10.0 0.3 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-AD PF07776.10 gi|218884472|ref|YP_002428854.1| - 1.2 9.2 3.5 2.7 8.0 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) Ribosomal_L40e PF01020.12 gi|218884472|ref|YP_002428854.1| - 4 7.0 5.7 2.2 7.9 0.4 2.2 1 1 1 2 2 2 0 Ribosomal L40e family Ribosomal_L5_C PF00673.16 gi|218884473|ref|YP_002428855.1| - 2e-21 75.5 0.0 3.7e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|218884473|ref|YP_002428855.1| - 1.2e-15 56.9 0.2 2.5e-15 55.9 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 UPF0147 PF03685.8 gi|218884473|ref|YP_002428855.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0147) NAC PF01849.13 gi|218884473|ref|YP_002428855.1| - 0.12 11.9 0.2 0.3 10.6 0.1 1.7 1 0 0 1 1 1 0 NAC domain Ribosomal_S4e PF00900.15 gi|218884474|ref|YP_002428856.1| - 9.5e-28 95.6 0.2 1.6e-27 94.9 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|218884474|ref|YP_002428856.1| - 4.6e-15 55.1 2.1 8.1e-15 54.3 1.5 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|218884474|ref|YP_002428856.1| - 3.8e-11 42.2 0.2 1.4e-10 40.4 0.0 2.1 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|218884474|ref|YP_002428856.1| - 0.0071 16.0 0.8 0.017 14.7 0.5 1.7 1 0 0 1 1 1 1 KOW motif S4_2 PF13275.1 gi|218884474|ref|YP_002428856.1| - 0.039 13.5 0.4 0.088 12.4 0.0 1.8 2 0 0 2 2 2 0 S4 domain 3HCDH PF00725.17 gi|218884474|ref|YP_002428856.1| - 0.075 13.4 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KOW PF00467.24 gi|218884475|ref|YP_002428857.1| - 1.1e-10 40.7 2.3 1.1e-10 40.7 1.6 1.6 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|218884476|ref|YP_002428858.1| - 8.8e-38 128.7 0.0 1e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|218884477|ref|YP_002428859.1| - 1.9e-25 88.7 3.8 2.3e-25 88.4 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 zf-C3H1 PF10650.4 gi|218884477|ref|YP_002428859.1| - 0.12 11.8 0.6 0.21 11.1 0.4 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain TCTP PF00838.12 gi|218884477|ref|YP_002428859.1| - 0.19 11.7 0.6 0.25 11.3 0.4 1.1 1 0 0 1 1 1 0 Translationally controlled tumour protein UPF0086 PF01868.11 gi|218884478|ref|YP_002428860.1| - 8.5e-28 95.8 0.0 9.3e-28 95.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|218884479|ref|YP_002428861.1| - 4.6e-22 77.4 6.0 5.5e-22 77.2 4.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.1 gi|218884479|ref|YP_002428861.1| - 0.11 12.7 0.5 0.13 12.5 0.3 1.1 1 0 0 1 1 1 0 Calmodulin-binding Ribosomal_S3_C PF00189.15 gi|218884480|ref|YP_002428862.1| - 1.1e-17 63.9 0.1 4.9e-17 61.9 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|218884480|ref|YP_002428862.1| - 1.3e-12 47.1 0.0 2.4e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|218884480|ref|YP_002428862.1| - 1.6e-05 24.4 2.3 9.4e-05 21.9 0.5 2.6 2 1 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|218884480|ref|YP_002428862.1| - 0.00073 19.1 0.1 0.0018 17.9 0.0 1.7 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|218884480|ref|YP_002428862.1| - 0.071 12.7 3.1 0.15 11.7 0.5 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|218884481|ref|YP_002428863.1| - 1.4e-34 118.1 0.2 1.7e-34 117.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|218884482|ref|YP_002428864.1| - 3e-32 110.0 0.3 4.1e-32 109.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.12 gi|218884482|ref|YP_002428864.1| - 0.0013 19.0 0.8 0.0023 18.2 0.5 1.3 1 0 0 1 1 1 1 bZIP Maf transcription factor VWA_CoxE PF05762.9 gi|218884483|ref|YP_002428865.1| - 6.6e-17 61.3 0.1 1.1e-16 60.6 0.1 1.2 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|218884483|ref|YP_002428865.1| - 5.9e-07 29.7 0.0 1.6e-06 28.3 0.0 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain PALP PF00291.20 gi|218884483|ref|YP_002428865.1| - 0.083 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Tax PF02959.11 gi|218884483|ref|YP_002428865.1| - 0.1 12.0 0.0 0.34 10.3 0.0 1.7 2 0 0 2 2 2 0 HTLV Tax AAA_5 PF07728.9 gi|218884484|ref|YP_002428866.1| - 3.6e-16 59.1 0.0 5.5e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|218884484|ref|YP_002428866.1| - 0.00026 20.6 0.0 0.0022 17.6 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|218884484|ref|YP_002428866.1| - 0.0051 17.0 0.0 0.024 14.8 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|218884484|ref|YP_002428866.1| - 0.01 15.3 0.0 3.3 7.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|218884484|ref|YP_002428866.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|218884484|ref|YP_002428866.1| - 0.062 13.6 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|218884484|ref|YP_002428866.1| - 0.088 12.3 0.0 0.24 10.9 0.0 1.7 1 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|218884484|ref|YP_002428866.1| - 0.12 12.5 0.0 10 6.2 0.0 2.6 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.16 gi|218884484|ref|YP_002428866.1| - 0.17 11.0 0.0 3.7 6.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Ribosomal_L2_C PF03947.13 gi|218884485|ref|YP_002428867.1| - 7.5e-39 132.4 1.8 1.1e-38 131.9 1.2 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|218884485|ref|YP_002428867.1| - 6.4e-10 38.8 0.0 1.4e-09 37.7 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|218884486|ref|YP_002428868.1| - 6.2e-20 70.9 1.0 8.6e-20 70.4 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 Pox_polyA_pol_N PF12630.2 gi|218884486|ref|YP_002428868.1| - 0.03 14.3 0.1 0.038 14.1 0.1 1.2 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain ASL_C PF08328.6 gi|218884486|ref|YP_002428868.1| - 0.057 13.2 0.1 0.063 13.1 0.0 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal Ribosomal_L4 PF00573.17 gi|218884487|ref|YP_002428869.1| - 8.2e-36 123.1 0.0 9.9e-36 122.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|218884488|ref|YP_002428870.1| - 1.2e-52 178.9 0.2 5e-52 176.8 0.1 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|218884489|ref|YP_002428871.1| - 3.4e-27 95.5 0.0 1.1e-26 93.8 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methyltransferase YpjP PF14005.1 gi|218884489|ref|YP_002428871.1| - 0.037 13.7 0.2 0.26 11.0 0.1 2.0 2 0 0 2 2 2 0 YpjP-like protein PAPS_reduct PF01507.14 gi|218884490|ref|YP_002428872.1| - 2.4e-43 147.9 0.0 4.6e-43 147.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|218884490|ref|YP_002428872.1| - 0.074 12.3 0.0 0.75 9.1 0.0 2.2 2 0 0 2 2 2 0 ATP-binding region QueC PF06508.8 gi|218884490|ref|YP_002428872.1| - 0.14 11.3 0.5 0.7 9.1 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DEAD PF00270.24 gi|218884491|ref|YP_002428873.1| - 1.4e-32 112.5 0.0 6.6e-29 100.5 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|218884491|ref|YP_002428873.1| - 2.6e-18 65.6 0.0 4e-17 61.8 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.6 gi|218884491|ref|YP_002428873.1| - 9.6e-14 51.5 0.0 2.6e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.10 gi|218884491|ref|YP_002428873.1| - 0.00013 21.8 0.0 0.00038 20.3 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|218884491|ref|YP_002428873.1| - 0.059 12.6 0.0 0.25 10.5 0.0 1.9 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.1 gi|218884491|ref|YP_002428873.1| - 0.11 12.6 0.3 2.9 8.0 0.1 3.2 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|218884491|ref|YP_002428873.1| - 0.12 12.0 0.1 0.85 9.4 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain T4SS-DNA_transf PF02534.9 gi|218884491|ref|YP_002428873.1| - 0.25 9.8 0.0 0.44 9.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer zf-HIT PF04438.11 gi|218884491|ref|YP_002428873.1| - 0.56 9.8 1.6 0.55 9.9 0.1 1.7 2 0 0 2 2 2 0 HIT zinc finger PCNA_N PF00705.13 gi|218884495|ref|YP_002428877.1| - 1.1e-10 41.0 0.0 3.2e-10 39.6 0.0 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|218884495|ref|YP_002428877.1| - 6.1e-09 35.8 0.3 2.7e-06 27.3 0.1 3.4 2 2 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.7 gi|218884495|ref|YP_002428877.1| - 0.0065 15.4 0.0 0.0086 15.0 0.0 1.4 1 0 0 1 1 1 1 Hus1-like protein Pox_TAP PF03355.9 gi|218884495|ref|YP_002428877.1| - 0.065 12.5 0.1 2.4 7.4 0.0 2.1 2 0 0 2 2 2 0 Viral Trans-Activator Protein POR PF01558.13 gi|218884496|ref|YP_002428878.1| - 3.2e-40 137.8 0.4 3.8e-40 137.6 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|218884497|ref|YP_002428879.1| - 9.7e-18 62.9 16.3 6e-10 38.3 4.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218884497|ref|YP_002428879.1| - 7.6e-13 48.0 21.9 6.4e-09 35.4 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|218884497|ref|YP_002428879.1| - 5.1e-12 45.9 9.7 7e-12 45.5 6.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|218884497|ref|YP_002428879.1| - 1.3e-11 44.1 10.9 1.6e-11 43.8 7.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|218884497|ref|YP_002428879.1| - 1.5e-11 43.6 17.3 1.9e-06 27.5 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|218884497|ref|YP_002428879.1| - 3.3e-10 39.2 14.6 4e-05 23.2 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|218884497|ref|YP_002428879.1| - 1e-09 38.4 12.7 1.4e-09 38.0 8.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218884497|ref|YP_002428879.1| - 1.5e-09 38.4 6.7 1.7e-05 25.4 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|218884497|ref|YP_002428879.1| - 1.8e-08 34.2 5.4 0.00073 19.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|218884497|ref|YP_002428879.1| - 3e-07 30.2 15.9 0.0016 18.6 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218884497|ref|YP_002428879.1| - 3.6e-06 27.2 9.0 0.0075 16.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|218884497|ref|YP_002428879.1| - 1.6e-05 25.1 6.7 0.027 14.8 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|218884497|ref|YP_002428879.1| - 0.00029 21.1 19.3 0.039 14.5 5.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|218884497|ref|YP_002428879.1| - 0.0015 19.0 16.0 0.06 13.9 3.4 3.0 2 2 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|218884497|ref|YP_002428879.1| - 0.0038 17.5 10.9 0.27 11.6 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|218884497|ref|YP_002428879.1| - 0.0044 16.8 6.7 0.019 14.8 4.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain POR_N PF01855.14 gi|218884498|ref|YP_002428880.1| - 6e-68 228.7 0.5 7.6e-68 228.4 0.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|218884498|ref|YP_002428880.1| - 0.0036 17.2 0.0 0.0074 16.2 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|218884498|ref|YP_002428880.1| - 0.01 15.3 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|218884499|ref|YP_002428881.1| - 1e-23 83.5 0.2 1.5e-23 83.0 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|218884499|ref|YP_002428881.1| - 0.019 13.9 0.8 0.035 13.0 0.4 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Sec61_beta PF03911.11 gi|218884500|ref|YP_002428882.1| - 1.5e-11 43.8 0.7 2.3e-11 43.2 0.5 1.3 1 0 0 1 1 1 1 Sec61beta family MazG PF03819.12 gi|218884501|ref|YP_002428883.1| - 1.9e-13 50.1 0.6 2.3e-13 49.8 0.4 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|218884501|ref|YP_002428883.1| - 0.0054 16.9 0.3 0.0061 16.8 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase PcrB PF01884.12 gi|218884502|ref|YP_002428884.1| - 5.8e-58 195.8 0.1 6.8e-58 195.6 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|218884502|ref|YP_002428884.1| - 2.9e-05 23.4 0.0 4.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|218884502|ref|YP_002428884.1| - 0.0033 16.4 0.1 0.0049 15.8 0.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Ribul_P_3_epim PF00834.14 gi|218884502|ref|YP_002428884.1| - 0.0066 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family MTD PF01993.13 gi|218884502|ref|YP_002428884.1| - 0.029 13.4 0.1 1 8.3 0.0 2.6 2 1 1 3 3 3 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Trp_syntA PF00290.15 gi|218884502|ref|YP_002428884.1| - 0.032 12.7 0.1 0.084 11.3 0.0 1.6 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|218884502|ref|YP_002428884.1| - 0.058 12.2 0.1 0.1 11.4 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Elf1 PF05129.8 gi|218884503|ref|YP_002428885.1| - 7.8e-19 67.1 0.3 1e-18 66.7 0.2 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|218884503|ref|YP_002428885.1| - 1.6e-05 24.0 0.4 4.3e-05 22.7 0.3 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|218884503|ref|YP_002428885.1| - 2.3e-05 24.5 0.1 3.9e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ribosomal_L32p PF01783.18 gi|218884503|ref|YP_002428885.1| - 0.0068 16.5 2.5 0.033 14.3 0.3 2.1 2 0 0 2 2 2 1 Ribosomal L32p protein family zf-ribbon_3 PF13248.1 gi|218884503|ref|YP_002428885.1| - 0.01 14.9 1.3 0.11 11.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|218884503|ref|YP_002428885.1| - 0.014 15.2 1.9 0.23 11.3 0.1 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 GATA PF00320.22 gi|218884503|ref|YP_002428885.1| - 0.019 14.2 0.6 0.033 13.5 0.4 1.4 1 0 0 1 1 1 0 GATA zinc finger zf-ISL3 PF14690.1 gi|218884503|ref|YP_002428885.1| - 0.023 14.7 0.1 0.57 10.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FdhE PF04216.7 gi|218884503|ref|YP_002428885.1| - 0.048 13.3 0.3 0.062 13.0 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation TFIIS_C PF01096.13 gi|218884503|ref|YP_002428885.1| - 0.059 13.0 0.6 0.1 12.2 0.4 1.3 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) Ogr_Delta PF04606.7 gi|218884503|ref|YP_002428885.1| - 0.098 12.3 1.7 0.16 11.6 1.2 1.4 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger DUF1610 PF07754.6 gi|218884503|ref|YP_002428885.1| - 0.14 12.2 0.5 0.14 12.2 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RecR PF02132.10 gi|218884503|ref|YP_002428885.1| - 0.17 11.3 1.5 8.2 5.9 0.0 2.9 3 0 0 3 3 3 0 RecR protein zinc_ribbon_5 PF13719.1 gi|218884503|ref|YP_002428885.1| - 0.18 11.4 1.3 7.9 6.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|218884503|ref|YP_002428885.1| - 0.23 10.9 1.5 7.7 6.0 0.0 2.3 2 0 0 2 2 2 0 HypF finger zinc_ribbon_4 PF13717.1 gi|218884503|ref|YP_002428885.1| - 0.24 11.1 1.5 8.8 6.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.6 gi|218884503|ref|YP_002428885.1| - 0.26 10.6 1.3 1.7 8.0 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|218884503|ref|YP_002428885.1| - 0.31 10.7 1.6 1.6 8.4 1.3 1.9 1 1 1 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|218884503|ref|YP_002428885.1| - 0.36 10.3 5.1 1.7 8.2 0.9 2.4 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|218884503|ref|YP_002428885.1| - 0.49 10.2 2.5 1.8 8.4 1.7 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|218884503|ref|YP_002428885.1| - 1.5 8.3 7.0 0.92 9.0 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|218884503|ref|YP_002428885.1| - 1.5 8.5 4.6 9.2 6.0 3.2 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|218884503|ref|YP_002428885.1| - 2.7 8.0 4.5 4 7.4 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain SWIM PF04434.12 gi|218884504|ref|YP_002428886.1| - 0.001 18.4 0.1 0.002 17.5 0.1 1.5 1 1 0 1 1 1 1 SWIM zinc finger DUF830 PF05708.7 gi|218884508|ref|YP_002428890.1| - 2e-16 60.4 0.0 2.5e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Orthopoxvirus protein of unknown function (DUF830) NLPC_P60 PF00877.14 gi|218884508|ref|YP_002428890.1| - 5.2e-06 26.2 0.2 2.7e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 NlpC/P60 family LRAT PF04970.8 gi|218884508|ref|YP_002428890.1| - 0.0002 21.3 0.0 0.00029 20.8 0.0 1.2 1 0 0 1 1 1 1 Lecithin retinol acyltransferase ABC_tran PF00005.22 gi|218884509|ref|YP_002428891.1| - 5.6e-29 101.1 0.0 8.9e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218884509|ref|YP_002428891.1| - 1.3e-11 45.0 0.3 7.1e-06 26.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|218884509|ref|YP_002428891.1| - 3.3e-05 23.9 0.0 6.8e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|218884509|ref|YP_002428891.1| - 0.00023 20.4 0.0 0.00035 19.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|218884509|ref|YP_002428891.1| - 0.0029 17.0 0.0 0.0053 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|218884509|ref|YP_002428891.1| - 0.0041 17.2 0.1 0.014 15.5 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|218884509|ref|YP_002428891.1| - 0.0061 16.9 0.1 0.0097 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|218884509|ref|YP_002428891.1| - 0.0064 15.7 0.1 0.14 11.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|218884509|ref|YP_002428891.1| - 0.0072 17.1 0.2 0.018 15.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|218884509|ref|YP_002428891.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|218884509|ref|YP_002428891.1| - 0.021 13.4 0.1 0.4 9.2 0.0 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Miro PF08477.8 gi|218884509|ref|YP_002428891.1| - 0.022 15.2 0.0 0.04 14.4 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|218884509|ref|YP_002428891.1| - 0.024 14.5 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|218884509|ref|YP_002428891.1| - 0.025 14.4 0.0 0.096 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|218884509|ref|YP_002428891.1| - 0.026 13.2 0.1 0.047 12.3 0.0 1.4 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|218884509|ref|YP_002428891.1| - 0.027 14.1 0.0 0.061 12.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|218884509|ref|YP_002428891.1| - 0.032 14.5 0.1 0.07 13.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|218884509|ref|YP_002428891.1| - 0.034 13.5 0.0 0.078 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain SbcCD_C PF13558.1 gi|218884509|ref|YP_002428891.1| - 0.039 13.8 0.1 0.093 12.6 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|218884509|ref|YP_002428891.1| - 0.052 12.5 0.0 0.26 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|218884509|ref|YP_002428891.1| - 0.054 13.7 0.1 0.19 11.8 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|218884509|ref|YP_002428891.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|218884509|ref|YP_002428891.1| - 0.11 11.8 0.1 0.68 9.3 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|218884509|ref|YP_002428891.1| - 0.13 12.0 0.0 0.38 10.5 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain Adeno_IVa2 PF02456.10 gi|218884509|ref|YP_002428891.1| - 0.13 10.8 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.17 gi|218884510|ref|YP_002428892.1| - 2.9e-16 59.5 47.7 7.5e-10 38.6 8.7 3.2 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component AAA_assoc_C PF09821.4 gi|218884511|ref|YP_002428893.1| - 6.2e-20 71.6 0.0 7.2e-20 71.4 0.0 1.0 1 0 0 1 1 1 1 C-terminal AAA-associated domain DUF505 PF04458.7 gi|218884511|ref|YP_002428893.1| - 0.0093 14.1 0.1 0.01 14.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) CARD PF00619.16 gi|218884511|ref|YP_002428893.1| - 0.012 15.4 0.3 0.018 14.8 0.2 1.3 1 0 0 1 1 1 0 Caspase recruitment domain CTP_synth_N PF06418.9 gi|218884511|ref|YP_002428893.1| - 0.091 11.8 0.2 0.13 11.2 0.1 1.2 1 1 0 1 1 1 0 CTP synthase N-terminus Calmodulin_bind PF07887.6 gi|218884511|ref|YP_002428893.1| - 0.092 11.7 0.0 0.1 11.6 0.0 1.0 1 0 0 1 1 1 0 Calmodulin binding protein-like E1-E2_ATPase PF00122.15 gi|218884512|ref|YP_002428894.1| - 1.3e-55 187.9 4.6 1.3e-55 187.9 3.2 2.3 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|218884512|ref|YP_002428894.1| - 1.7e-34 120.1 0.5 2.8e-34 119.4 0.3 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|218884512|ref|YP_002428894.1| - 1.3e-13 51.5 0.0 3e-13 50.3 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|218884512|ref|YP_002428894.1| - 4.3e-13 48.5 0.0 1.7e-12 46.6 0.0 2.1 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|218884512|ref|YP_002428894.1| - 3.2e-06 26.9 0.1 6.6e-05 22.6 0.1 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Lon_2 PF13337.1 gi|218884513|ref|YP_002428895.1| - 1.8e-152 507.9 0.0 2e-152 507.7 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease DUF2154 PF09922.4 gi|218884513|ref|YP_002428895.1| - 0.14 11.8 0.1 0.78 9.4 0.0 2.3 3 0 0 3 3 3 0 Cell wall-active antibiotics response protein (DUF2154) Methyltransf_26 PF13659.1 gi|218884514|ref|YP_002428896.1| - 4.1e-16 59.0 0.0 4.2e-15 55.8 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain N6_Mtase PF02384.11 gi|218884514|ref|YP_002428896.1| - 8e-08 31.7 0.0 0.00011 21.4 0.0 2.4 2 0 0 2 2 2 2 N-6 DNA Methylase TaqI_C PF12950.2 gi|218884514|ref|YP_002428896.1| - 2.6e-05 23.9 0.0 0.00021 21.0 0.0 2.5 1 1 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.6 gi|218884514|ref|YP_002428896.1| - 9.9e-05 22.6 0.0 0.00029 21.1 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|218884514|ref|YP_002428896.1| - 0.00047 19.7 0.0 0.043 13.3 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Nuf2 PF03800.9 gi|218884514|ref|YP_002428896.1| - 0.053 13.4 0.0 34 4.3 0.0 3.2 3 0 0 3 3 3 0 Nuf2 family zf-TFIIB PF13453.1 gi|218884515|ref|YP_002428897.1| - 0.00013 21.0 0.3 0.019 14.1 0.0 2.1 2 0 0 2 2 2 1 Transcription factor zinc-finger UPF0547 PF10571.4 gi|218884515|ref|YP_002428897.1| - 0.00026 20.6 3.8 0.0046 16.6 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|218884515|ref|YP_002428897.1| - 0.0018 17.8 0.7 1.1 8.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|218884515|ref|YP_002428897.1| - 0.0037 16.9 0.9 1.3 8.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|218884515|ref|YP_002428897.1| - 0.0044 16.5 2.0 0.09 12.3 0.1 2.1 2 0 0 2 2 2 1 Sec23/Sec24 zinc finger CpXC PF14353.1 gi|218884515|ref|YP_002428897.1| - 0.0066 16.4 0.0 4.1 7.3 0.0 2.0 2 0 0 2 2 2 2 CpXC protein Zn-ribbon_8 PF09723.5 gi|218884515|ref|YP_002428897.1| - 0.018 14.9 0.1 2.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|218884515|ref|YP_002428897.1| - 0.022 13.9 1.8 0.27 10.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|218884515|ref|YP_002428897.1| - 0.023 13.7 0.2 2.6 7.1 0.0 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-RING_3 PF14369.1 gi|218884515|ref|YP_002428897.1| - 0.03 14.3 0.7 7.9 6.5 0.1 2.3 2 0 0 2 2 2 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|218884515|ref|YP_002428897.1| - 0.033 13.6 1.8 0.43 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2225 PF09986.4 gi|218884515|ref|YP_002428897.1| - 0.038 13.4 0.1 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-C2H2_4 PF13894.1 gi|218884515|ref|YP_002428897.1| - 0.056 13.8 1.7 7.5 7.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF164 PF02591.10 gi|218884515|ref|YP_002428897.1| - 0.061 13.1 1.3 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 Putative zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|218884515|ref|YP_002428897.1| - 0.064 12.9 0.3 0.97 9.1 0.0 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|218884515|ref|YP_002428897.1| - 0.13 12.5 0.6 22 5.5 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|218884515|ref|YP_002428897.1| - 0.13 12.0 5.5 1 9.2 0.6 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|218884515|ref|YP_002428897.1| - 0.36 10.9 5.0 0.76 9.8 0.1 2.4 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_RNApol_7kD PF03604.8 gi|218884515|ref|YP_002428897.1| - 0.37 10.3 0.3 0.37 10.3 0.2 2.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|218884515|ref|YP_002428897.1| - 0.41 10.9 1.8 1 9.7 1.3 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar P5CR_dimer PF14748.1 gi|218884517|ref|YP_002428899.1| - 1.3e-17 63.7 0.0 1.9e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation DUF973 PF06157.6 gi|218884518|ref|YP_002428900.1| - 4.4e-09 35.7 26.7 6.7e-09 35.1 18.5 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Claudin_2 PF13903.1 gi|218884518|ref|YP_002428900.1| - 0.00025 20.7 16.3 0.0023 17.6 3.6 2.2 1 1 1 2 2 2 2 PMP-22/EMP/MP20/Claudin tight junction MRAP PF15183.1 gi|218884518|ref|YP_002428900.1| - 0.54 9.8 0.0 0.54 9.8 0.0 2.0 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family UPF0051 PF01458.12 gi|218884519|ref|YP_002428901.1| - 3.4e-28 98.6 0.0 4.7e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Methyltransf_26 PF13659.1 gi|218884519|ref|YP_002428901.1| - 1.1e-10 41.4 0.0 1.5e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|218884519|ref|YP_002428901.1| - 1.6e-10 40.9 0.0 2e-09 37.3 0.0 2.1 2 0 0 2 2 2 1 DNA methylase UPF0020 PF01170.13 gi|218884519|ref|YP_002428901.1| - 3.2e-10 39.8 0.0 1.5e-06 27.8 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Pam16 PF03656.8 gi|218884519|ref|YP_002428901.1| - 0.097 12.4 0.1 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Pam16 MarR_2 PF12802.2 gi|218884520|ref|YP_002428902.1| - 4e-05 23.1 0.1 5.8e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 MarR family Ribosomal_S25 PF03297.10 gi|218884520|ref|YP_002428902.1| - 9.8e-05 22.3 0.1 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 S25 ribosomal protein HTH_11 PF08279.7 gi|218884520|ref|YP_002428902.1| - 0.00051 19.6 0.6 0.0055 16.3 0.1 2.0 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|218884520|ref|YP_002428902.1| - 0.00067 19.7 0.1 0.00086 19.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|218884520|ref|YP_002428902.1| - 0.00075 19.2 0.0 0.00091 18.9 0.0 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|218884520|ref|YP_002428902.1| - 0.00093 19.2 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|218884520|ref|YP_002428902.1| - 0.0013 18.4 0.2 0.0018 17.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|218884520|ref|YP_002428902.1| - 0.0015 18.6 0.0 0.0018 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|218884520|ref|YP_002428902.1| - 0.0031 17.4 0.2 0.0042 17.0 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|218884520|ref|YP_002428902.1| - 0.0045 16.3 0.0 0.0076 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|218884520|ref|YP_002428902.1| - 0.022 14.2 0.8 0.047 13.1 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|218884520|ref|YP_002428902.1| - 0.024 14.3 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|218884520|ref|YP_002428902.1| - 0.029 13.9 0.5 0.063 12.8 0.2 1.7 1 1 1 2 2 2 0 LexA DNA binding domain EAP30 PF04157.11 gi|218884520|ref|YP_002428902.1| - 0.033 13.3 0.0 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_23 PF13384.1 gi|218884520|ref|YP_002428902.1| - 0.036 13.7 0.0 0.065 12.9 0.0 1.5 1 1 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|218884520|ref|YP_002428902.1| - 0.062 12.9 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MerR PF00376.18 gi|218884520|ref|YP_002428902.1| - 0.085 12.4 0.3 0.57 9.7 0.2 2.1 1 1 1 2 2 2 0 MerR family regulatory protein HTH_28 PF13518.1 gi|218884520|ref|YP_002428902.1| - 0.099 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|218884520|ref|YP_002428902.1| - 0.1 12.1 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit RtcB PF01139.12 gi|218884521|ref|YP_002428903.1| - 3.4e-149 497.3 0.0 3.9e-149 497.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB tRNA-synt_His PF13393.1 gi|218884522|ref|YP_002428904.1| - 3.8e-52 177.2 0.1 4.7e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|218884522|ref|YP_002428904.1| - 9.4e-23 80.6 0.2 1.5e-22 79.9 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|218884522|ref|YP_002428904.1| - 1.5e-06 28.0 0.0 3.6e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|218884522|ref|YP_002428904.1| - 0.00096 18.4 0.0 0.002 17.3 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|218884522|ref|YP_002428904.1| - 0.005 15.6 0.4 0.13 11.0 0.1 2.2 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_int_endo PF01974.12 gi|218884523|ref|YP_002428905.1| - 1.7e-08 34.1 0.1 3.7e-08 33.0 0.1 1.6 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|218884523|ref|YP_002428905.1| - 0.00014 21.3 0.0 0.00031 20.2 0.0 1.6 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|218884523|ref|YP_002428905.1| - 0.023 14.9 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 Sen15 protein IF-2B PF01008.12 gi|218884524|ref|YP_002428906.1| - 1.3e-81 273.7 0.1 1.5e-81 273.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Rep_fac_C PF08542.6 gi|218884524|ref|YP_002428906.1| - 0.03 14.3 0.0 1.5 8.8 0.0 2.4 2 0 0 2 2 2 0 Replication factor C C-terminal domain Arc_PepC_II PF06847.6 gi|218884525|ref|YP_002428907.1| - 1.8e-13 50.7 0.1 3.8e-13 49.6 0.1 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|218884525|ref|YP_002428907.1| - 5.5e-09 36.1 5.5 5.5e-09 36.1 3.8 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family C9orf72-like PF15019.1 gi|218884525|ref|YP_002428907.1| - 0.045 12.9 0.0 0.075 12.2 0.0 1.4 1 0 0 1 1 1 0 C9orf72-like protein family Rad51 PF08423.6 gi|218884526|ref|YP_002428908.1| - 2.3e-97 324.9 0.0 3.1e-97 324.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|218884526|ref|YP_002428908.1| - 5.3e-17 61.8 0.0 6.6e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|218884526|ref|YP_002428908.1| - 2.1e-16 59.8 0.1 7.7e-15 54.8 0.0 2.3 3 0 0 3 3 3 1 AAA domain KaiC PF06745.8 gi|218884526|ref|YP_002428908.1| - 2.9e-11 42.9 0.0 5.2e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|218884526|ref|YP_002428908.1| - 1.6e-06 28.1 0.7 9e-06 25.7 0.1 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|218884526|ref|YP_002428908.1| - 0.0014 18.5 0.0 0.0041 17.0 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif AAA_22 PF13401.1 gi|218884526|ref|YP_002428908.1| - 0.002 18.2 0.0 0.004 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|218884526|ref|YP_002428908.1| - 0.0071 16.6 0.0 0.024 14.9 0.0 2.0 2 1 0 2 2 1 1 AAA domain Sigma70_r3 PF04539.11 gi|218884526|ref|YP_002428908.1| - 0.014 15.2 0.5 0.52 10.2 0.1 2.8 3 0 0 3 3 3 0 Sigma-70 region 3 HTH_31 PF13560.1 gi|218884526|ref|YP_002428908.1| - 0.014 15.5 0.3 1.4 9.2 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain Cytidylate_kin2 PF13189.1 gi|218884526|ref|YP_002428908.1| - 0.016 15.0 0.0 4.9 7.0 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_17 PF13207.1 gi|218884526|ref|YP_002428908.1| - 0.022 15.6 0.0 3.8 8.3 0.0 2.9 2 1 1 3 3 3 0 AAA domain HTH_3 PF01381.17 gi|218884526|ref|YP_002428908.1| - 0.025 14.4 0.1 5.1 7.0 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix DUF2448 PF10476.4 gi|218884526|ref|YP_002428908.1| - 0.04 13.4 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2448) ABC_tran PF00005.22 gi|218884526|ref|YP_002428908.1| - 0.041 14.1 0.0 0.11 12.8 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_24 PF13479.1 gi|218884526|ref|YP_002428908.1| - 0.09 12.3 0.0 0.47 9.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain TPP_enzyme_M PF00205.17 gi|218884526|ref|YP_002428908.1| - 0.1 12.3 0.1 3.1 7.5 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Cdd1 PF11731.3 gi|218884526|ref|YP_002428908.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus tRNA-Thr_ED PF08915.6 gi|218884527|ref|YP_002428909.1| - 1.4e-48 164.3 0.0 2.4e-48 163.5 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|218884527|ref|YP_002428909.1| - 8.6e-26 89.7 0.6 1.9e-25 88.6 0.4 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|218884527|ref|YP_002428909.1| - 1.5e-13 50.7 0.1 3e-13 49.7 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) NOB1_Zn_bind PF08772.6 gi|218884528|ref|YP_002428910.1| - 0.00036 20.3 1.2 0.00089 19.0 0.9 1.6 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Ogr_Delta PF04606.7 gi|218884528|ref|YP_002428910.1| - 0.00051 19.6 0.5 0.00083 18.9 0.4 1.3 1 1 0 1 1 1 1 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|218884528|ref|YP_002428910.1| - 0.00089 18.3 1.1 0.017 14.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|218884528|ref|YP_002428910.1| - 0.0062 16.3 2.5 0.01 15.6 1.7 1.5 1 1 0 1 1 1 1 LITAF-like zinc ribbon domain Nudix_N_2 PF14803.1 gi|218884528|ref|YP_002428910.1| - 0.012 15.3 0.9 0.4 10.4 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal HypA PF01155.14 gi|218884528|ref|YP_002428910.1| - 0.012 15.2 0.1 0.015 15.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ISL3 PF14690.1 gi|218884528|ref|YP_002428910.1| - 0.013 15.4 0.6 0.37 10.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|218884528|ref|YP_002428910.1| - 0.016 15.0 1.0 0.03 14.1 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|218884528|ref|YP_002428910.1| - 0.025 14.2 3.4 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|218884528|ref|YP_002428910.1| - 0.049 12.9 0.4 0.049 12.9 0.3 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Elf1 PF05129.8 gi|218884528|ref|YP_002428910.1| - 0.052 13.2 0.1 0.067 12.8 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF3797 PF12677.2 gi|218884528|ref|YP_002428910.1| - 0.062 12.9 0.7 0.062 12.9 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF35_N PF12172.3 gi|218884528|ref|YP_002428910.1| - 0.095 12.6 1.3 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|218884528|ref|YP_002428910.1| - 0.12 12.3 0.6 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Terminase_GpA PF05876.7 gi|218884528|ref|YP_002428910.1| - 0.15 10.3 1.3 0.16 10.2 0.9 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-NADH-PPase PF09297.6 gi|218884528|ref|YP_002428910.1| - 0.21 11.1 2.6 2.4 7.7 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|218884528|ref|YP_002428910.1| - 0.21 11.0 2.3 1.5 8.3 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|218884528|ref|YP_002428910.1| - 0.23 11.4 3.1 1.5 8.8 2.1 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|218884528|ref|YP_002428910.1| - 0.24 11.7 1.2 5.5 7.3 0.9 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_6 PF13912.1 gi|218884528|ref|YP_002428910.1| - 0.32 10.9 3.9 6.9 6.7 0.3 2.4 2 1 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.13 gi|218884528|ref|YP_002428910.1| - 0.44 10.2 4.6 7.7 6.2 0.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L33 PF00471.15 gi|218884528|ref|YP_002428910.1| - 0.58 10.4 3.2 2.6 8.3 1.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 zf-H2C2_2 PF13465.1 gi|218884528|ref|YP_002428910.1| - 0.63 10.4 3.7 1 9.8 0.7 2.1 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|218884528|ref|YP_002428910.1| - 0.7 9.2 5.5 1.2 8.5 0.5 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|218884528|ref|YP_002428910.1| - 0.74 9.3 8.8 10 5.7 6.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|218884528|ref|YP_002428910.1| - 0.83 9.4 5.0 0.62 9.9 0.3 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e DUF4379 PF14311.1 gi|218884528|ref|YP_002428910.1| - 1.3 8.8 5.2 3.4 7.5 3.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) PhnA_Zn_Ribbon PF08274.7 gi|218884528|ref|YP_002428910.1| - 1.6 8.6 4.5 11 5.9 0.5 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_5 PF13719.1 gi|218884528|ref|YP_002428910.1| - 1.6 8.3 3.7 15 5.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.22 gi|218884528|ref|YP_002428910.1| - 2.1 7.7 5.1 1.2 8.5 0.1 2.1 2 0 0 2 2 2 0 GATA zinc finger DUF1610 PF07754.6 gi|218884528|ref|YP_002428910.1| - 2.2 8.4 7.9 0.48 10.5 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2 PF00096.21 gi|218884528|ref|YP_002428910.1| - 3.3 8.2 5.9 14 6.2 0.7 2.5 1 1 1 2 2 2 0 Zinc finger, C2H2 type TP6A_N PF04406.9 gi|218884529|ref|YP_002428911.1| - 8.2e-24 83.0 0.1 1.5e-23 82.2 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|218884529|ref|YP_002428911.1| - 0.0035 17.1 0.0 0.0064 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.6 gi|218884530|ref|YP_002428912.1| - 1.3e-60 203.6 0.0 2.1e-60 202.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|218884530|ref|YP_002428912.1| - 9.5e-15 54.2 0.0 6.3e-14 51.6 0.0 2.3 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|218884530|ref|YP_002428912.1| - 7.4e-13 48.3 0.0 1.3e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|218884530|ref|YP_002428912.1| - 7.9e-08 31.2 0.1 7.9e-06 24.6 0.0 2.1 2 0 0 2 2 2 2 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|218884530|ref|YP_002428912.1| - 0.0086 16.5 0.1 0.037 14.4 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein S13/S18 H2TH PF06831.9 gi|218884530|ref|YP_002428912.1| - 0.073 12.8 0.0 0.45 10.3 0.0 2.3 3 0 0 3 3 3 0 Formamidopyrimidine-DNA glycosylase H2TH domain HIT PF01230.18 gi|218884531|ref|YP_002428913.1| - 2.9e-13 50.1 0.0 4e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|218884531|ref|YP_002428913.1| - 1.6e-08 34.7 0.0 2.3e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|218884531|ref|YP_002428913.1| - 3.6e-07 29.8 0.1 5.3e-07 29.3 0.1 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Myosin_head PF00063.16 gi|218884532|ref|YP_002428914.1| - 0.00086 17.4 0.0 0.00094 17.3 0.0 1.0 1 0 0 1 1 1 1 Myosin head (motor domain) DUF1864 PF08933.6 gi|218884532|ref|YP_002428914.1| - 0.041 12.3 0.0 0.042 12.3 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) Ribosomal_L24e PF01246.15 gi|218884533|ref|YP_002428915.1| - 0.00024 20.9 0.1 0.00035 20.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L24e FYVE PF01363.16 gi|218884533|ref|YP_002428915.1| - 0.007 16.2 0.1 0.0079 16.0 0.0 1.2 1 0 0 1 1 1 1 FYVE zinc finger zf-FCS PF06467.9 gi|218884533|ref|YP_002428915.1| - 0.026 14.1 0.1 0.037 13.6 0.1 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Vps39_2 PF10367.4 gi|218884533|ref|YP_002428915.1| - 0.13 12.4 1.1 6 7.0 0.1 2.0 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 DUF2208 PF09973.4 gi|218884534|ref|YP_002428916.1| - 2.2e-39 135.0 8.0 2.8e-39 134.7 5.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF3784 PF12650.2 gi|218884534|ref|YP_002428916.1| - 0.98 9.4 18.1 1.3 9.0 4.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3784) DUF1430 PF07242.6 gi|218884534|ref|YP_002428916.1| - 1.4 8.9 9.7 2.6 8.1 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1430) DUF3021 PF11457.3 gi|218884534|ref|YP_002428916.1| - 5 6.9 13.6 4.8 7.0 7.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) DUF72 PF01904.13 gi|218884536|ref|YP_002428918.1| - 5.3e-40 137.5 0.0 6.5e-40 137.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|218884536|ref|YP_002428918.1| - 0.00023 20.4 0.0 0.00044 19.5 0.0 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel ACT_4 PF13291.1 gi|218884537|ref|YP_002428919.1| - 8.1e-07 29.2 0.1 1.6e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|218884537|ref|YP_002428919.1| - 7.1e-06 25.3 0.1 2.8e-05 23.4 0.1 2.1 1 1 0 1 1 1 1 ACT domain Antitoxin-MazE PF04014.13 gi|218884537|ref|YP_002428919.1| - 1.1e-05 25.0 0.1 2.3e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ACT_6 PF13740.1 gi|218884537|ref|YP_002428919.1| - 0.0016 18.1 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 ACT domain MraZ PF02381.13 gi|218884537|ref|YP_002428919.1| - 0.0072 16.0 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 MraZ protein Pribosyltran PF00156.22 gi|218884538|ref|YP_002428920.1| - 2.6e-13 49.7 0.3 5.3e-13 48.7 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|218884538|ref|YP_002428920.1| - 0.016 15.0 0.0 0.042 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix DUF1641 PF07849.6 gi|218884538|ref|YP_002428920.1| - 0.031 13.8 0.1 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1641) Glyco_hydro_39 PF01229.12 gi|218884538|ref|YP_002428920.1| - 0.14 10.5 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 ResIII PF04851.10 gi|218884540|ref|YP_002428922.1| - 4.6e-20 72.2 0.1 3.3e-19 69.4 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|218884540|ref|YP_002428922.1| - 1.4e-18 66.5 0.0 3.6e-18 65.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|218884540|ref|YP_002428922.1| - 2.8e-10 39.9 0.0 2.2e-09 37.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|218884540|ref|YP_002428922.1| - 1.1e-08 34.2 0.2 2.8e-05 23.0 0.0 2.3 1 1 1 2 2 2 2 SNF2 family N-terminal domain ATP-synt_ab PF00006.20 gi|218884540|ref|YP_002428922.1| - 0.016 14.7 0.1 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.1 gi|218884540|ref|YP_002428922.1| - 0.02 14.4 0.6 15 5.0 0.0 3.1 2 1 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|218884540|ref|YP_002428922.1| - 0.045 13.1 0.0 0.73 9.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|218884540|ref|YP_002428922.1| - 0.064 13.3 0.7 1.5 8.9 0.1 3.3 3 1 0 3 3 3 0 AAA domain 2-ph_phosp PF04029.9 gi|218884540|ref|YP_002428922.1| - 0.12 11.2 0.0 0.25 10.2 0.0 1.4 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase Alba PF01918.16 gi|218884542|ref|YP_002428924.1| - 4.3e-18 64.6 0.7 5.8e-18 64.2 0.5 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|218884542|ref|YP_002428924.1| - 0.057 13.0 0.2 0.076 12.6 0.1 1.3 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.15 gi|218884544|ref|YP_002428926.1| - 5.9e-77 259.1 0.0 9.1e-77 258.5 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|218884544|ref|YP_002428926.1| - 1.5e-19 69.8 0.0 5.7e-19 67.9 0.0 2.1 2 0 0 2 2 1 1 Toprim domain DEAD PF00270.24 gi|218884544|ref|YP_002428926.1| - 8.1e-15 54.7 0.1 3.6e-14 52.6 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|218884544|ref|YP_002428926.1| - 1.3e-07 31.3 0.1 0.00014 21.6 0.0 3.3 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|218884544|ref|YP_002428926.1| - 3.1e-06 26.8 0.1 2.6e-05 23.8 0.4 2.3 2 0 0 2 2 2 1 Part of AAA domain ResIII PF04851.10 gi|218884544|ref|YP_002428926.1| - 9.5e-06 25.5 0.0 2.1e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|218884544|ref|YP_002428926.1| - 0.0004 19.8 0.0 0.00094 18.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|218884544|ref|YP_002428926.1| - 0.001 18.5 0.0 0.0021 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|218884544|ref|YP_002428926.1| - 0.0014 18.7 0.1 0.0065 16.6 0.0 2.2 1 0 0 1 1 1 1 AAA domain Toprim_4 PF13662.1 gi|218884544|ref|YP_002428926.1| - 0.0022 17.9 0.0 0.0092 15.9 0.0 2.1 2 0 0 2 2 2 1 Toprim domain AAA_30 PF13604.1 gi|218884544|ref|YP_002428926.1| - 0.0073 15.9 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218884544|ref|YP_002428926.1| - 0.012 15.0 0.2 0.099 12.0 0.0 2.6 4 0 0 4 4 3 0 AAA-like domain DZR PF12773.2 gi|218884544|ref|YP_002428926.1| - 0.012 15.3 4.3 0.16 11.8 0.5 2.3 2 0 0 2 2 2 0 Double zinc ribbon AAA_16 PF13191.1 gi|218884544|ref|YP_002428926.1| - 0.025 14.5 0.0 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Bac_DnaA PF00308.13 gi|218884544|ref|YP_002428926.1| - 0.051 13.2 0.0 0.24 11.0 0.0 2.1 2 0 0 2 2 1 0 Bacterial dnaA protein HycI PF01750.13 gi|218884544|ref|YP_002428926.1| - 0.063 12.8 0.0 0.18 11.3 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase maturation protease PSCyt2 PF07583.6 gi|218884544|ref|YP_002428926.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1549) Auto_anti-p27 PF06677.7 gi|218884544|ref|YP_002428926.1| - 0.21 11.3 1.0 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) FYVE PF01363.16 gi|218884544|ref|YP_002428926.1| - 0.22 11.4 2.0 0.59 10.0 0.2 2.1 2 0 0 2 2 2 0 FYVE zinc finger DNA_ligase_ZBD PF03119.11 gi|218884544|ref|YP_002428926.1| - 0.6 9.8 3.0 25 4.6 0.3 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain GFA PF04828.9 gi|218884544|ref|YP_002428926.1| - 2.8 7.9 3.6 9.3 6.2 0.0 2.9 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|218884544|ref|YP_002428926.1| - 4.9 6.9 8.0 4.9 6.9 0.0 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|218884544|ref|YP_002428926.1| - 5.8 6.8 9.6 13 5.7 0.4 3.5 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|218884544|ref|YP_002428926.1| - 9 6.1 5.5 2.9 7.6 0.5 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.14 gi|218884544|ref|YP_002428926.1| - 9.2 5.9 6.1 6.2 6.5 0.2 2.9 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Alba PF01918.16 gi|218884545|ref|YP_002428927.1| - 9.2e-06 25.1 0.0 1.2e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Alba DUF367 PF04034.8 gi|218884546|ref|YP_002428928.1| - 3e-33 114.1 0.0 3.8e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) Glyco_hydro_98M PF08306.6 gi|218884546|ref|YP_002428928.1| - 0.11 11.1 0.0 0.22 10.1 0.0 1.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 98 AsnC_trans_reg PF01037.16 gi|218884547|ref|YP_002428929.1| - 3.4e-15 55.5 1.0 3.8e-15 55.3 0.7 1.1 1 0 0 1 1 1 1 AsnC family SnoaL PF07366.7 gi|218884547|ref|YP_002428929.1| - 0.022 14.3 0.0 0.027 14.0 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase GYD PF08734.6 gi|218884547|ref|YP_002428929.1| - 0.055 13.1 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 GYD domain tRNA-synt_1b PF00579.20 gi|218884548|ref|YP_002428930.1| - 9.9e-50 169.2 0.0 1.2e-48 165.7 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Lactamase_B_3 PF13483.1 gi|218884549|ref|YP_002428931.1| - 2.5e-24 85.8 0.0 3.2e-24 85.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|218884549|ref|YP_002428931.1| - 3.4e-21 75.6 0.0 4.1e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|218884549|ref|YP_002428931.1| - 2.8e-11 43.4 1.7 5.1e-11 42.5 1.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.19 gi|218884550|ref|YP_002428932.1| - 6.9e-42 143.3 0.0 8e-42 143.1 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF1512 PF07431.7 gi|218884551|ref|YP_002428933.1| - 1e-115 386.3 5.9 1.2e-115 386.0 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) zf-ribbon_3 PF13248.1 gi|218884552|ref|YP_002428934.1| - 0.0023 17.1 0.8 1.3 8.2 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|218884552|ref|YP_002428934.1| - 0.0033 17.0 0.7 0.78 9.4 0.0 2.2 2 0 0 2 2 2 1 Nudix N-terminal UPF0547 PF10571.4 gi|218884552|ref|YP_002428934.1| - 0.0051 16.4 0.3 2.9 7.6 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Ost4 PF10215.4 gi|218884552|ref|YP_002428934.1| - 0.013 15.0 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Oligosaccaryltransferase DZR PF12773.2 gi|218884552|ref|YP_002428934.1| - 0.032 14.0 0.7 0.073 12.9 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|218884552|ref|YP_002428934.1| - 0.045 13.4 1.4 2.1 8.0 0.0 2.2 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-C3HC4_3 PF13920.1 gi|218884552|ref|YP_002428934.1| - 0.053 13.1 0.1 0.078 12.6 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|218884552|ref|YP_002428934.1| - 0.056 13.2 0.5 3.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|218884552|ref|YP_002428934.1| - 0.056 13.1 0.1 0.079 12.6 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|218884552|ref|YP_002428934.1| - 0.06 13.3 2.5 0.19 11.6 1.7 1.7 1 1 1 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|218884552|ref|YP_002428934.1| - 0.087 12.3 2.7 0.42 10.1 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF4519 PF15012.1 gi|218884552|ref|YP_002428934.1| - 0.11 12.4 0.7 0.16 11.8 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4519) zf-tcix PF14952.1 gi|218884552|ref|YP_002428934.1| - 0.12 11.6 2.2 2.4 7.5 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RNA_POL_M_15KD PF02150.11 gi|218884552|ref|YP_002428934.1| - 0.14 11.8 3.8 0.34 10.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.14 gi|218884552|ref|YP_002428934.1| - 0.15 11.5 3.0 0.51 9.8 0.5 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|218884552|ref|YP_002428934.1| - 0.16 11.3 4.9 2.2 7.6 3.4 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|218884552|ref|YP_002428934.1| - 0.28 10.7 6.0 5.9 6.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|218884552|ref|YP_002428934.1| - 0.4 10.4 4.3 6.4 6.5 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|218884552|ref|YP_002428934.1| - 0.4 10.2 2.6 12 5.4 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|218884552|ref|YP_002428934.1| - 0.43 10.2 4.2 6.6 6.4 0.0 2.6 3 0 0 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|218884552|ref|YP_002428934.1| - 0.46 10.1 2.1 16 5.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) YhfH PF14149.1 gi|218884552|ref|YP_002428934.1| - 0.66 9.8 2.7 19 5.1 0.3 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF4044 PF13253.1 gi|218884552|ref|YP_002428934.1| - 1.4 8.1 5.7 2.6 7.2 3.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) zf-TFIIB PF13453.1 gi|218884552|ref|YP_002428934.1| - 5.7 6.2 5.8 36 3.6 4.0 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF1805 PF08827.6 gi|218884553|ref|YP_002428935.1| - 6.4e-21 73.9 1.0 9.1e-21 73.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) PK PF00224.16 gi|218884554|ref|YP_002428936.1| - 1.4e-81 273.8 0.1 1.7e-81 273.5 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|218884554|ref|YP_002428936.1| - 1.6e-07 30.8 1.1 8.3e-07 28.5 0.0 2.6 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain Resolvase PF00239.16 gi|218884556|ref|YP_002428938.1| - 3.5e-21 75.5 0.3 5.7e-21 74.8 0.2 1.4 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218884556|ref|YP_002428938.1| - 5.9e-07 29.6 0.1 1.4e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218884556|ref|YP_002428938.1| - 0.0011 18.4 0.2 0.0051 16.3 0.0 2.2 2 0 0 2 2 2 1 MerR family regulatory protein HTH_23 PF13384.1 gi|218884556|ref|YP_002428938.1| - 0.005 16.4 0.0 0.013 15.0 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|218884556|ref|YP_002428938.1| - 0.0057 16.6 0.1 0.015 15.2 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|218884556|ref|YP_002428938.1| - 0.0068 16.1 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein TIM PF00121.13 gi|218884557|ref|YP_002428939.1| - 1.6e-32 112.5 0.0 3.4e-31 108.1 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|218884557|ref|YP_002428939.1| - 5.7e-07 28.8 1.1 1e-06 28.0 0.8 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|218884557|ref|YP_002428939.1| - 0.00023 20.2 0.1 0.00034 19.7 0.0 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|218884557|ref|YP_002428939.1| - 0.0015 17.1 1.6 0.028 12.9 0.5 2.4 3 0 0 3 3 3 1 Tryptophan synthase alpha chain DHO_dh PF01180.16 gi|218884557|ref|YP_002428939.1| - 0.0016 17.4 0.4 0.0021 17.0 0.3 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase FMN_dh PF01070.13 gi|218884557|ref|YP_002428939.1| - 0.058 12.2 0.9 0.12 11.2 0.2 1.8 3 0 0 3 3 3 0 FMN-dependent dehydrogenase B12-binding PF02310.14 gi|218884557|ref|YP_002428939.1| - 0.077 12.8 0.7 1.3 8.8 0.1 2.3 2 1 0 2 2 2 0 B12 binding domain PcrB PF01884.12 gi|218884557|ref|YP_002428939.1| - 0.084 12.1 1.5 0.14 11.3 1.0 1.3 1 0 0 1 1 1 0 PcrB family FBPase_3 PF01950.11 gi|218884558|ref|YP_002428940.1| - 2.2e-187 622.4 0.0 2.5e-187 622.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.22 gi|218884559|ref|YP_002428941.1| - 1.6e-38 132.1 0.0 8.8e-20 71.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|218884559|ref|YP_002428941.1| - 6.4e-12 46.0 9.3 0.0014 18.6 0.2 4.3 2 2 0 3 3 3 3 AAA domain SMC_N PF02463.14 gi|218884559|ref|YP_002428941.1| - 9.4e-12 44.6 2.5 0.00028 20.2 0.1 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|218884559|ref|YP_002428941.1| - 1.8e-10 40.2 4.3 4.5e-10 38.9 3.0 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|218884559|ref|YP_002428941.1| - 2.1e-08 33.4 10.3 2.9e-08 32.9 3.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.1 gi|218884559|ref|YP_002428941.1| - 1.1e-07 32.0 0.4 0.0038 17.3 0.0 3.4 3 1 0 3 3 3 2 AAA domain Fer4_6 PF12837.2 gi|218884559|ref|YP_002428941.1| - 5.3e-06 26.0 12.7 4.9e-05 23.0 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218884559|ref|YP_002428941.1| - 1.3e-05 25.4 5.4 2.9e-05 24.3 3.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_17 PF13207.1 gi|218884559|ref|YP_002428941.1| - 6.1e-05 23.8 3.4 0.021 15.6 0.1 3.1 2 2 0 2 2 2 1 AAA domain Fer4_21 PF14697.1 gi|218884559|ref|YP_002428941.1| - 6.4e-05 22.7 7.5 0.00013 21.7 5.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218884559|ref|YP_002428941.1| - 9.1e-05 22.1 2.9 9.1e-05 22.1 2.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.1 gi|218884559|ref|YP_002428941.1| - 9.2e-05 21.9 0.2 0.44 10.0 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain DUF258 PF03193.11 gi|218884559|ref|YP_002428941.1| - 9.4e-05 21.6 0.1 0.2 10.8 0.0 3.1 3 0 0 3 3 3 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|218884559|ref|YP_002428941.1| - 0.00011 22.0 0.2 0.29 11.0 0.0 3.4 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Fer4_10 PF13237.1 gi|218884559|ref|YP_002428941.1| - 0.00012 21.7 21.0 0.0011 18.7 1.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain MobB PF03205.9 gi|218884559|ref|YP_002428941.1| - 0.00021 20.9 0.2 0.32 10.7 0.0 3.0 3 0 0 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|218884559|ref|YP_002428941.1| - 0.00024 21.0 0.1 0.016 15.1 0.0 3.2 4 0 0 4 4 2 1 AAA domain AAA PF00004.24 gi|218884559|ref|YP_002428941.1| - 0.0003 20.9 0.1 0.34 11.1 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|218884559|ref|YP_002428941.1| - 0.001 19.1 1.4 0.34 10.8 0.0 3.2 2 2 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|218884559|ref|YP_002428941.1| - 0.001 19.4 2.3 0.13 12.5 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|218884559|ref|YP_002428941.1| - 0.0012 19.1 0.2 0.82 9.9 0.0 3.0 2 1 0 2 2 2 1 AAA domain Fer4_9 PF13187.1 gi|218884559|ref|YP_002428941.1| - 0.0012 19.0 8.1 0.0037 17.4 5.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Rad17 PF03215.10 gi|218884559|ref|YP_002428941.1| - 0.0013 17.4 0.0 0.19 10.4 0.0 2.3 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|218884559|ref|YP_002428941.1| - 0.0017 18.8 0.1 2.3 8.7 0.0 2.8 3 0 0 3 3 2 1 Miro-like protein AAA_25 PF13481.1 gi|218884559|ref|YP_002428941.1| - 0.0021 17.4 0.4 0.19 11.1 0.0 3.0 3 0 0 3 3 3 1 AAA domain RNA_helicase PF00910.17 gi|218884559|ref|YP_002428941.1| - 0.0042 17.2 0.0 2 8.6 0.0 2.6 2 0 0 2 2 2 1 RNA helicase AAA_30 PF13604.1 gi|218884559|ref|YP_002428941.1| - 0.0047 16.5 0.2 1.4 8.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain Fer4_3 PF12798.2 gi|218884559|ref|YP_002428941.1| - 0.0059 17.0 4.4 0.0059 17.0 3.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain SRP54 PF00448.17 gi|218884559|ref|YP_002428941.1| - 0.0062 16.0 0.4 0.65 9.4 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_11 PF13247.1 gi|218884559|ref|YP_002428941.1| - 0.0085 15.9 1.6 0.016 15.1 1.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF359 PF04019.7 gi|218884559|ref|YP_002428941.1| - 0.011 15.0 0.6 0.085 12.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF359) AAA_33 PF13671.1 gi|218884559|ref|YP_002428941.1| - 0.012 15.4 0.0 1.4 8.7 0.0 3.0 3 0 0 3 3 2 0 AAA domain Fer4_16 PF13484.1 gi|218884559|ref|YP_002428941.1| - 0.013 16.2 2.2 0.013 16.2 1.5 2.3 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain ArgK PF03308.11 gi|218884559|ref|YP_002428941.1| - 0.015 14.0 0.6 3.7 6.2 0.0 2.3 2 0 0 2 2 2 0 ArgK protein MMR_HSR1 PF01926.18 gi|218884559|ref|YP_002428941.1| - 0.016 15.2 0.7 5.8 6.9 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase Thymidylate_kin PF02223.12 gi|218884559|ref|YP_002428941.1| - 0.02 14.2 0.0 8.6 5.6 0.0 3.1 3 0 0 3 3 3 0 Thymidylate kinase NACHT PF05729.7 gi|218884559|ref|YP_002428941.1| - 0.026 14.1 0.7 0.46 10.1 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Fer4_8 PF13183.1 gi|218884559|ref|YP_002428941.1| - 0.026 14.5 4.5 0.056 13.4 1.2 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain ATP_bind_1 PF03029.12 gi|218884559|ref|YP_002428941.1| - 0.027 13.9 0.8 3.1 7.2 0.0 3.5 4 0 0 4 4 4 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.1 gi|218884559|ref|YP_002428941.1| - 0.031 13.3 0.1 6.1 5.7 0.0 2.8 4 0 0 4 4 3 0 AAA ATPase domain KAP_NTPase PF07693.9 gi|218884559|ref|YP_002428941.1| - 0.035 13.0 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 KAP family P-loop domain AAA_13 PF13166.1 gi|218884559|ref|YP_002428941.1| - 0.044 12.2 0.0 3.2 6.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|218884559|ref|YP_002428941.1| - 0.053 12.9 2.6 2.7 7.3 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain Fer4_13 PF13370.1 gi|218884559|ref|YP_002428941.1| - 0.067 13.5 1.3 0.24 11.8 0.9 2.0 1 0 0 1 1 1 0 4Fe-4S single cluster domain T2SE PF00437.15 gi|218884559|ref|YP_002428941.1| - 0.11 11.4 0.3 2.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|218884559|ref|YP_002428941.1| - 0.12 12.3 0.3 16 5.4 0.0 3.1 3 1 0 3 3 3 0 AAA domain Fer4_17 PF13534.1 gi|218884559|ref|YP_002428941.1| - 0.14 12.4 6.4 0.13 12.6 1.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.10 gi|218884559|ref|YP_002428941.1| - 0.2 11.3 0.9 2.6 7.7 0.0 2.4 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.17 gi|218884559|ref|YP_002428941.1| - 0.22 10.3 1.2 2.3 6.9 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain Ribophorin_I PF04597.9 gi|218884559|ref|YP_002428941.1| - 0.23 9.9 0.8 13 4.2 0.1 2.1 2 0 0 2 2 2 0 Ribophorin I AAA_24 PF13479.1 gi|218884559|ref|YP_002428941.1| - 0.3 10.6 0.0 0.3 10.6 0.0 2.3 3 0 0 3 3 2 0 AAA domain DUF87 PF01935.12 gi|218884559|ref|YP_002428941.1| - 0.47 10.2 3.5 19 4.9 0.7 2.9 2 1 0 2 2 2 0 Domain of unknown function DUF87 Fer4_4 PF12800.2 gi|218884559|ref|YP_002428941.1| - 0.57 10.6 13.3 0.043 14.1 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218884559|ref|YP_002428941.1| - 1.2 9.5 9.5 0.14 12.6 2.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218884559|ref|YP_002428941.1| - 2.4 8.8 9.0 0.37 11.3 2.2 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain zf-NADH-PPase PF09297.6 gi|218884560|ref|YP_002428942.1| - 4e-05 23.0 0.2 0.00012 21.5 0.2 1.8 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|218884560|ref|YP_002428942.1| - 5.6e-05 22.8 0.2 9.8e-05 22.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|218884560|ref|YP_002428942.1| - 0.00011 21.5 0.4 0.13 11.8 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|218884560|ref|YP_002428942.1| - 0.00011 21.7 0.7 0.0002 20.9 0.5 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.1 gi|218884560|ref|YP_002428942.1| - 0.00034 19.7 1.3 0.00065 18.8 0.9 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger DUF2387 PF09526.5 gi|218884560|ref|YP_002428942.1| - 0.00091 19.1 1.5 0.0015 18.4 1.0 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|218884560|ref|YP_002428942.1| - 0.0022 17.5 0.6 0.0054 16.3 0.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|218884560|ref|YP_002428942.1| - 0.0035 17.6 0.4 0.0061 16.8 0.3 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar IBR PF01485.16 gi|218884560|ref|YP_002428942.1| - 0.0047 16.7 0.3 0.0095 15.7 0.2 1.4 1 0 0 1 1 1 1 IBR domain Zn_ribbon_recom PF13408.1 gi|218884560|ref|YP_002428942.1| - 0.0053 16.9 2.9 2.6 8.3 1.4 2.2 1 1 1 2 2 2 2 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|218884560|ref|YP_002428942.1| - 0.0085 15.8 0.3 0.014 15.2 0.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|218884560|ref|YP_002428942.1| - 0.012 15.3 0.4 0.012 15.3 0.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Elf1 PF05129.8 gi|218884560|ref|YP_002428942.1| - 0.012 15.2 0.4 0.023 14.3 0.2 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C4_Topoisom PF01396.14 gi|218884560|ref|YP_002428942.1| - 0.019 14.4 3.6 0.45 10.0 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|218884560|ref|YP_002428942.1| - 0.019 14.6 2.0 2 8.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|218884560|ref|YP_002428942.1| - 0.024 13.8 4.4 0.14 11.3 3.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|218884560|ref|YP_002428942.1| - 0.039 13.4 0.5 0.084 12.3 0.3 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF2543 PF10820.3 gi|218884560|ref|YP_002428942.1| - 0.046 13.7 0.7 0.057 13.4 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2543) GFA PF04828.9 gi|218884560|ref|YP_002428942.1| - 0.061 13.2 0.5 5.6 6.9 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Auto_anti-p27 PF06677.7 gi|218884560|ref|YP_002428942.1| - 0.08 12.7 4.0 0.42 10.4 3.0 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.9 gi|218884560|ref|YP_002428942.1| - 0.086 12.5 2.2 0.15 11.7 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|218884560|ref|YP_002428942.1| - 0.092 12.4 2.4 1.9 8.1 0.4 2.5 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family eIF-5_eIF-2B PF01873.12 gi|218884560|ref|YP_002428942.1| - 0.12 12.0 2.1 0.33 10.6 0.3 2.2 2 1 0 2 2 2 0 Domain found in IF2B/IF5 Nudix_N_2 PF14803.1 gi|218884560|ref|YP_002428942.1| - 0.13 11.9 1.6 2.1 8.0 1.4 2.2 1 1 1 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.8 gi|218884560|ref|YP_002428942.1| - 0.16 11.4 3.5 0.49 9.9 2.4 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|218884560|ref|YP_002428942.1| - 0.22 10.8 1.9 0.64 9.3 1.3 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding FYDLN_acid PF09538.5 gi|218884560|ref|YP_002428942.1| - 0.22 12.1 4.3 0.32 11.6 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.5 gi|218884560|ref|YP_002428942.1| - 0.4 10.6 4.1 7.7 6.5 0.2 2.3 1 1 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|218884560|ref|YP_002428942.1| - 0.41 10.6 3.2 5.2 7.1 2.1 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ISL3 PF14690.1 gi|218884560|ref|YP_002428942.1| - 0.49 10.4 4.9 3.3 7.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin PF00301.15 gi|218884560|ref|YP_002428942.1| - 1.9 8.4 4.3 5.6 6.9 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin Rpr2 PF04032.11 gi|218884560|ref|YP_002428942.1| - 2 8.3 6.2 6.3 6.7 2.2 2.7 2 2 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Ribosomal_S17e PF00833.13 gi|218884561|ref|YP_002428943.1| - 3.6e-22 78.4 0.4 4e-22 78.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4423 PF14394.1 gi|218884565|ref|YP_002428947.1| - 0.029 13.9 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AdoHcyase PF05221.12 gi|218884566|ref|YP_002428948.1| - 1.4e-70 237.2 0.0 1.6e-70 237.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|218884566|ref|YP_002428948.1| - 1.3e-54 184.4 0.0 2e-54 183.8 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|218884566|ref|YP_002428948.1| - 6.6e-09 35.1 0.3 1.3e-08 34.2 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|218884566|ref|YP_002428948.1| - 1.6e-06 27.6 0.0 2.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|218884566|ref|YP_002428948.1| - 0.029 14.3 0.5 0.12 12.3 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|218884566|ref|YP_002428948.1| - 0.13 11.8 0.7 0.33 10.5 0.4 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain zf-RNPHF PF08080.7 gi|218884566|ref|YP_002428948.1| - 0.18 11.3 0.3 0.32 10.5 0.2 1.4 1 0 0 1 1 1 0 RNPHF zinc finger TGT_C2 PF14810.1 gi|218884567|ref|YP_002428949.1| - 5.7e-20 70.9 0.0 1.2e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|218884567|ref|YP_002428949.1| - 5.2e-15 54.9 0.1 7.7e-15 54.3 0.1 1.3 1 0 0 1 1 1 1 PUA domain PAC2 PF09754.4 gi|218884568|ref|YP_002428950.1| - 3.5e-31 108.7 0.1 4.1e-31 108.5 0.1 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.13 gi|218884569|ref|YP_002428951.1| - 5.2e-47 160.1 0.0 7.8e-47 159.5 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|218884569|ref|YP_002428951.1| - 0.017 14.9 0.1 0.18 11.6 0.1 2.3 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation CRAL_TRIO_2 PF13716.1 gi|218884569|ref|YP_002428951.1| - 0.025 14.5 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Divergent CRAL/TRIO domain Lsm_C PF14894.1 gi|218884570|ref|YP_002428952.1| - 1.4e-28 98.1 0.9 7.9e-28 95.7 0.5 2.0 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.17 gi|218884570|ref|YP_002428952.1| - 7.3e-09 35.0 0.1 1.1e-08 34.4 0.1 1.3 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.7 gi|218884570|ref|YP_002428952.1| - 0.00058 19.2 0.0 0.00085 18.6 0.0 1.3 1 0 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.1 gi|218884570|ref|YP_002428952.1| - 0.0031 17.4 0.0 0.0047 16.8 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Cpn60_TCP1 PF00118.19 gi|218884572|ref|YP_002428954.1| - 1.6e-167 557.9 10.3 1.9e-167 557.8 7.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DMA PF03474.9 gi|218884572|ref|YP_002428954.1| - 0.1 12.4 0.4 9.8 6.1 0.0 2.7 2 0 0 2 2 2 0 DMRTA motif HK97-gp10_like PF04883.7 gi|218884572|ref|YP_002428954.1| - 0.5 11.3 3.3 39 5.2 0.0 4.5 4 1 0 4 4 4 0 Bacteriophage HK97-gp10, putative tail-component Pyr_redox_2 PF07992.9 gi|218884573|ref|YP_002428955.1| - 9.3e-31 107.2 0.5 1.2e-30 106.8 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|218884573|ref|YP_002428955.1| - 9.8e-15 55.1 0.2 3.3e-11 43.6 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|218884573|ref|YP_002428955.1| - 4.5e-13 49.4 3.9 3.5e-10 40.1 0.1 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|218884573|ref|YP_002428955.1| - 2.3e-12 46.4 1.9 1e-06 27.8 0.8 3.6 3 1 1 4 4 4 3 FAD binding domain HI0933_like PF03486.9 gi|218884573|ref|YP_002428955.1| - 3.7e-09 35.5 0.6 0.00038 19.0 0.1 3.2 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|218884573|ref|YP_002428955.1| - 7.7e-09 34.8 11.3 4.9e-06 25.6 0.5 3.8 4 1 0 4 4 4 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|218884573|ref|YP_002428955.1| - 2.6e-07 29.9 3.2 8.5e-05 21.7 0.3 2.7 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.2 gi|218884573|ref|YP_002428955.1| - 4e-07 29.4 5.1 6.3e-07 28.8 0.0 3.0 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|218884573|ref|YP_002428955.1| - 9.3e-07 28.2 2.3 4.7e-05 22.5 0.4 2.5 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|218884573|ref|YP_002428955.1| - 2.1e-06 26.8 5.1 0.00057 18.8 1.4 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|218884573|ref|YP_002428955.1| - 0.00017 21.7 0.3 0.18 12.0 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|218884573|ref|YP_002428955.1| - 0.00044 20.2 4.1 0.021 14.8 0.9 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|218884573|ref|YP_002428955.1| - 0.0011 17.6 2.9 0.38 9.3 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|218884573|ref|YP_002428955.1| - 0.0018 17.2 0.9 0.095 11.5 0.2 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.1 gi|218884573|ref|YP_002428955.1| - 0.012 14.5 0.2 7.9 5.2 0.0 3.0 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_Gly3P_dh_N PF01210.18 gi|218884573|ref|YP_002428955.1| - 0.017 14.8 0.9 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|218884573|ref|YP_002428955.1| - 0.08 13.0 1.1 3.4 7.7 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|218884573|ref|YP_002428955.1| - 0.15 11.8 0.8 18 5.0 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding Aldo_ket_red PF00248.16 gi|218884574|ref|YP_002428956.1| - 1.5e-73 247.1 0.0 1.7e-73 246.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Antimicrobial20 PF08256.6 gi|218884574|ref|YP_002428956.1| - 2.9 8.4 4.5 14 6.3 1.7 2.6 2 0 0 2 2 2 0 Aurein-like antibiotic peptide DUF2122 PF09895.4 gi|218884575|ref|YP_002428957.1| - 1.3e-22 80.0 0.0 1.5e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DNA_methylase PF00145.12 gi|218884576|ref|YP_002428958.1| - 2.2e-45 155.2 0.0 1.9e-31 109.4 0.0 2.1 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|218884576|ref|YP_002428958.1| - 0.0043 16.6 0.0 0.0078 15.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TFIIE_alpha PF02002.12 gi|218884577|ref|YP_002428959.1| - 3.9e-10 39.1 0.6 1.9e-09 36.9 0.1 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.7 gi|218884577|ref|YP_002428959.1| - 0.0012 18.0 0.3 0.0023 17.2 0.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.14 gi|218884577|ref|YP_002428959.1| - 0.034 13.8 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Phage_endo_I PF05367.6 gi|218884577|ref|YP_002428959.1| - 0.065 12.6 0.0 0.092 12.1 0.0 1.2 1 0 0 1 1 1 0 Phage endonuclease I PhnA_Zn_Ribbon PF08274.7 gi|218884577|ref|YP_002428959.1| - 0.085 12.6 0.3 0.15 11.8 0.2 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|218884577|ref|YP_002428959.1| - 0.14 11.8 0.2 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|218884577|ref|YP_002428959.1| - 0.14 12.4 0.6 0.32 11.3 0.0 1.8 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|218884577|ref|YP_002428959.1| - 0.14 11.7 0.1 0.31 10.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF1610 PF07754.6 gi|218884577|ref|YP_002428959.1| - 0.46 10.6 2.2 4.6 7.4 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) AAA PF00004.24 gi|218884579|ref|YP_002428961.1| - 2.5e-43 147.4 0.3 3.6e-42 143.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|218884579|ref|YP_002428961.1| - 4.3e-07 29.9 0.1 2.2e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|218884579|ref|YP_002428961.1| - 9.8e-06 24.7 0.0 2.3e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|218884579|ref|YP_002428961.1| - 9.9e-06 25.6 0.1 0.00018 21.5 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|218884579|ref|YP_002428961.1| - 1.1e-05 25.1 0.1 3.9e-05 23.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|218884579|ref|YP_002428961.1| - 8.9e-05 22.6 0.1 0.0011 19.1 0.1 2.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|218884579|ref|YP_002428961.1| - 0.00013 21.1 0.3 0.0005 19.2 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.1 gi|218884579|ref|YP_002428961.1| - 0.00019 22.2 0.7 0.00058 20.6 0.2 2.2 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|218884579|ref|YP_002428961.1| - 0.00025 20.0 0.0 0.00062 18.7 0.0 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|218884579|ref|YP_002428961.1| - 0.00059 19.7 0.0 0.0013 18.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|218884579|ref|YP_002428961.1| - 0.0009 18.6 0.6 0.053 12.9 0.1 2.8 2 1 1 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|218884579|ref|YP_002428961.1| - 0.00097 18.3 0.0 0.0021 17.2 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|218884579|ref|YP_002428961.1| - 0.0013 18.5 0.3 0.0082 15.8 0.0 2.5 2 1 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|218884579|ref|YP_002428961.1| - 0.0015 18.4 0.3 0.0084 15.9 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|218884579|ref|YP_002428961.1| - 0.0015 18.4 0.1 0.0036 17.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain TIP49 PF06068.8 gi|218884579|ref|YP_002428961.1| - 0.0028 16.4 0.0 0.0052 15.5 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|218884579|ref|YP_002428961.1| - 0.0032 16.9 0.2 0.0082 15.5 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein ATP-synt_ab PF00006.20 gi|218884579|ref|YP_002428961.1| - 0.0044 16.5 0.0 0.011 15.2 0.0 1.8 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|218884579|ref|YP_002428961.1| - 0.0044 16.6 0.2 0.028 14.0 0.0 2.1 2 0 0 2 2 2 1 NACHT domain RNA_helicase PF00910.17 gi|218884579|ref|YP_002428961.1| - 0.0074 16.4 0.0 0.024 14.8 0.0 1.9 2 0 0 2 2 1 1 RNA helicase AAA_24 PF13479.1 gi|218884579|ref|YP_002428961.1| - 0.0079 15.8 0.1 0.019 14.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|218884579|ref|YP_002428961.1| - 0.012 15.3 0.2 0.032 13.9 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|218884579|ref|YP_002428961.1| - 0.027 14.7 0.1 0.085 13.1 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_18 PF13238.1 gi|218884579|ref|YP_002428961.1| - 0.03 14.6 0.2 0.15 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|218884579|ref|YP_002428961.1| - 0.039 12.8 0.0 0.072 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain TFIID-18kDa PF02269.11 gi|218884579|ref|YP_002428961.1| - 0.054 13.2 0.3 0.16 11.8 0.2 1.7 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit Sigma54_activ_2 PF14532.1 gi|218884579|ref|YP_002428961.1| - 0.076 13.0 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|218884579|ref|YP_002428961.1| - 0.081 12.3 0.1 0.24 10.8 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain DUF2246 PF10229.4 gi|218884579|ref|YP_002428961.1| - 0.09 12.0 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2246) Glyco_hydro_59 PF02057.10 gi|218884579|ref|YP_002428961.1| - 0.1 10.6 0.0 0.14 10.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 59 AAA_10 PF12846.2 gi|218884579|ref|YP_002428961.1| - 0.12 11.7 1.0 3 7.1 0.7 3.0 1 1 0 1 1 1 0 AAA-like domain KaiC PF06745.8 gi|218884579|ref|YP_002428961.1| - 0.23 10.5 0.1 0.23 10.5 0.0 2.5 3 1 0 3 3 3 0 KaiC AAA_23 PF13476.1 gi|218884579|ref|YP_002428961.1| - 0.86 9.8 0.0 0.86 9.8 0.0 2.9 3 2 0 3 3 3 0 AAA domain HTH_3 PF01381.17 gi|218884580|ref|YP_002428962.1| - 4.9e-11 42.3 1.2 8.6e-11 41.5 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|218884580|ref|YP_002428962.1| - 2.6e-10 40.3 0.7 4.2e-10 39.6 0.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|218884580|ref|YP_002428962.1| - 7.3e-10 38.7 0.2 1.3e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|218884580|ref|YP_002428962.1| - 5.2e-05 22.8 0.3 0.00011 21.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4428 PF14471.1 gi|218884580|ref|YP_002428962.1| - 0.0033 17.1 1.1 0.0076 15.9 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF2072 PF09845.4 gi|218884580|ref|YP_002428962.1| - 0.0085 16.0 1.0 0.013 15.4 0.7 1.4 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) HTH_37 PF13744.1 gi|218884580|ref|YP_002428962.1| - 0.028 14.2 0.1 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain zf-DNL PF05180.7 gi|218884580|ref|YP_002428962.1| - 0.28 10.9 4.6 0.29 10.8 2.4 1.6 2 0 0 2 2 2 0 DNL zinc finger DUF1178 PF06676.6 gi|218884580|ref|YP_002428962.1| - 0.38 10.9 2.4 0.21 11.8 0.5 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) DZR PF12773.2 gi|218884580|ref|YP_002428962.1| - 2 8.2 6.5 24 4.8 4.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|218884580|ref|YP_002428962.1| - 4.4 6.9 7.0 10 5.7 1.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain MMR_HSR1 PF01926.18 gi|218884581|ref|YP_002428963.1| - 3.3e-21 75.3 0.0 6.8e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|218884581|ref|YP_002428963.1| - 2e-12 46.6 0.0 3.4e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|218884581|ref|YP_002428963.1| - 1.5e-08 34.3 0.4 8.2e-07 28.6 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|218884581|ref|YP_002428963.1| - 3.5e-06 26.3 0.0 7.5e-06 25.2 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|218884581|ref|YP_002428963.1| - 5.6e-05 22.6 0.8 0.0005 19.5 0.5 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation GTP-bdg_N PF13167.1 gi|218884581|ref|YP_002428963.1| - 0.00098 19.2 0.0 0.003 17.6 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|218884581|ref|YP_002428963.1| - 0.0013 18.1 2.5 0.082 12.3 0.1 2.6 3 0 0 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|218884581|ref|YP_002428963.1| - 0.0064 16.9 0.0 0.013 15.9 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein AAA_23 PF13476.1 gi|218884581|ref|YP_002428963.1| - 0.011 16.1 0.0 0.035 14.4 0.0 1.7 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|218884581|ref|YP_002428963.1| - 0.031 14.5 0.1 0.063 13.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|218884581|ref|YP_002428963.1| - 0.088 12.3 1.0 0.51 9.8 0.0 2.1 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.1 gi|218884581|ref|YP_002428963.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|218884581|ref|YP_002428963.1| - 0.11 12.3 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Dynamin family AAA_29 PF13555.1 gi|218884581|ref|YP_002428963.1| - 0.16 11.4 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Trm56 PF01994.11 gi|218884582|ref|YP_002428964.1| - 3.5e-49 165.5 0.0 4.3e-49 165.2 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Imm13 PF15564.1 gi|218884583|ref|YP_002428965.1| - 0.0055 16.4 0.2 0.016 14.9 0.0 1.8 2 0 0 2 2 2 1 Immunity protein 13 NPV_P10 PF05531.7 gi|218884584|ref|YP_002428966.1| - 3.9e-08 33.4 23.6 0.00095 19.3 2.3 3.6 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF2730 PF10805.3 gi|218884584|ref|YP_002428966.1| - 1.4e-07 31.1 0.9 0.0013 18.4 0.0 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) Baculo_PEP_C PF04513.7 gi|218884584|ref|YP_002428966.1| - 1.3e-05 25.0 40.7 0.00019 21.2 7.1 3.4 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|218884584|ref|YP_002428966.1| - 1.5e-05 24.7 15.9 0.0014 18.4 2.8 3.1 2 1 2 4 4 3 3 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|218884584|ref|YP_002428966.1| - 3.1e-05 23.7 18.9 0.01 15.6 3.2 3.2 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) Reo_sigmaC PF04582.7 gi|218884584|ref|YP_002428966.1| - 3.1e-05 23.3 37.5 0.0049 16.1 14.6 2.3 1 1 1 2 2 2 2 Reovirus sigma C capsid protein RmuC PF02646.11 gi|218884584|ref|YP_002428966.1| - 7.4e-05 21.7 7.4 0.04 12.7 0.5 3.0 1 1 2 3 3 3 2 RmuC family COG2 PF06148.6 gi|218884584|ref|YP_002428966.1| - 9.2e-05 22.3 9.1 0.82 9.5 1.0 3.2 1 1 2 3 3 3 3 COG (conserved oligomeric Golgi) complex component, COG2 WEMBL PF05701.6 gi|218884584|ref|YP_002428966.1| - 0.00015 20.3 0.9 0.00023 19.7 0.6 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|218884584|ref|YP_002428966.1| - 0.00015 20.5 4.6 0.00054 18.7 0.4 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein TBPIP PF07106.8 gi|218884584|ref|YP_002428966.1| - 0.00018 21.0 3.6 0.003 17.1 0.8 2.5 1 1 2 3 3 3 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Tweety PF04906.8 gi|218884584|ref|YP_002428966.1| - 0.00048 18.6 10.9 0.028 12.8 2.7 2.1 1 1 1 2 2 2 2 Tweety FlaC_arch PF05377.6 gi|218884584|ref|YP_002428966.1| - 0.0011 18.7 18.5 0.83 9.6 2.3 4.4 1 1 3 4 4 4 2 Flagella accessory protein C (FlaC) Laminin_II PF06009.7 gi|218884584|ref|YP_002428966.1| - 0.0012 18.6 22.7 0.39 10.4 3.5 3.1 1 1 2 3 3 3 2 Laminin Domain II AAA_13 PF13166.1 gi|218884584|ref|YP_002428966.1| - 0.0012 17.4 10.0 0.0018 16.8 6.9 1.1 1 0 0 1 1 1 1 AAA domain Snapin_Pallidin PF14712.1 gi|218884584|ref|YP_002428966.1| - 0.0014 18.8 4.3 0.94 9.8 0.3 3.1 1 1 2 3 3 3 2 Snapin/Pallidin DUF869 PF05911.6 gi|218884584|ref|YP_002428966.1| - 0.0027 16.0 3.7 0.0036 15.6 2.5 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Seryl_tRNA_N PF02403.17 gi|218884584|ref|YP_002428966.1| - 0.0028 17.6 2.8 0.12 12.3 0.7 2.5 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain IFT57 PF10498.4 gi|218884584|ref|YP_002428966.1| - 0.0049 15.6 4.7 0.01 14.6 3.2 1.4 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 Phasin PF05597.6 gi|218884584|ref|YP_002428966.1| - 0.0057 16.4 6.9 0.041 13.6 0.1 2.4 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) MtrB PF05440.7 gi|218884584|ref|YP_002428966.1| - 0.0061 16.5 3.0 0.36 10.8 0.1 3.4 1 1 1 3 3 3 1 Tetrahydromethanopterin S-methyltransferase subunit B ALIX_LYPXL_bnd PF13949.1 gi|218884584|ref|YP_002428966.1| - 0.0076 15.2 3.5 0.014 14.3 2.5 1.4 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV WXG100 PF06013.7 gi|218884584|ref|YP_002428966.1| - 0.0085 16.0 3.6 1.4 8.9 0.2 3.5 1 1 2 3 3 3 1 Proteins of 100 residues with WXG DUF3584 PF12128.3 gi|218884584|ref|YP_002428966.1| - 0.011 13.1 0.4 0.014 12.7 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Syntaxin PF00804.20 gi|218884584|ref|YP_002428966.1| - 0.011 15.9 9.7 0.79 9.9 4.3 3.0 1 1 1 2 2 2 0 Syntaxin BLOC1_2 PF10046.4 gi|218884584|ref|YP_002428966.1| - 0.011 15.8 9.7 0.022 14.9 1.0 3.2 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 EzrA PF06160.7 gi|218884584|ref|YP_002428966.1| - 0.014 13.6 4.7 0.027 12.6 3.0 1.5 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Myosin_tail_1 PF01576.14 gi|218884584|ref|YP_002428966.1| - 0.014 13.1 0.2 0.019 12.7 0.2 1.1 1 0 0 1 1 1 0 Myosin tail CENP-F_leu_zip PF10473.4 gi|218884584|ref|YP_002428966.1| - 0.017 14.9 0.1 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.4 gi|218884584|ref|YP_002428966.1| - 0.018 14.0 0.8 0.079 11.8 0.5 1.8 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin PF00261.15 gi|218884584|ref|YP_002428966.1| - 0.018 14.1 0.1 0.5 9.4 0.1 2.0 1 1 0 1 1 1 0 Tropomyosin XhlA PF10779.4 gi|218884584|ref|YP_002428966.1| - 0.025 14.5 1.8 6.6 6.7 0.3 3.0 2 1 1 3 3 3 0 Haemolysin XhlA TMCO5 PF14992.1 gi|218884584|ref|YP_002428966.1| - 0.028 13.5 0.1 0.041 13.0 0.1 1.1 1 0 0 1 1 1 0 TMCO5 family MCPsignal PF00015.16 gi|218884584|ref|YP_002428966.1| - 0.037 13.5 34.0 0.41 10.1 4.7 2.9 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin_2 PF14523.1 gi|218884584|ref|YP_002428966.1| - 0.044 13.8 15.4 0.31 11.0 2.0 2.6 1 1 1 2 2 2 0 Syntaxin-like protein Tropomyosin_1 PF12718.2 gi|218884584|ref|YP_002428966.1| - 0.046 13.5 0.0 0.084 12.7 0.0 1.4 1 1 0 1 1 1 0 Tropomyosin like Nup54 PF13874.1 gi|218884584|ref|YP_002428966.1| - 0.051 13.2 0.3 0.27 10.8 0.1 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Laminin_I PF06008.9 gi|218884584|ref|YP_002428966.1| - 0.053 12.8 7.0 0.16 11.2 4.8 1.7 1 1 0 1 1 1 0 Laminin Domain I DUF4631 PF15450.1 gi|218884584|ref|YP_002428966.1| - 0.066 11.4 0.0 0.1 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) Sec34 PF04136.10 gi|218884584|ref|YP_002428966.1| - 0.068 12.8 5.8 2.7 7.6 0.5 3.0 1 1 2 3 3 3 0 Sec34-like family DUF2408 PF10303.4 gi|218884584|ref|YP_002428966.1| - 0.082 13.0 6.2 3.2 7.8 3.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) HSBP1 PF06825.7 gi|218884584|ref|YP_002428966.1| - 0.088 12.3 0.0 4 7.1 0.0 3.0 2 1 0 2 2 2 0 Heat shock factor binding protein 1 APG17 PF04108.7 gi|218884584|ref|YP_002428966.1| - 0.11 11.2 8.7 0.86 8.3 0.1 2.1 1 1 1 2 2 2 0 Autophagy protein Apg17 TPR_MLP1_2 PF07926.7 gi|218884584|ref|YP_002428966.1| - 0.12 12.0 1.7 0.31 10.7 0.3 1.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Sec3_C PF09763.4 gi|218884584|ref|YP_002428966.1| - 0.15 10.1 5.3 0.21 9.6 0.4 2.6 2 1 1 3 3 3 0 Exocyst complex component Sec3 DUF2400 PF09674.5 gi|218884584|ref|YP_002428966.1| - 0.17 11.5 1.0 6.2 6.4 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) Cast PF10174.4 gi|218884584|ref|YP_002428966.1| - 0.2 9.6 0.0 0.28 9.1 0.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone MscS_porin PF12795.2 gi|218884584|ref|YP_002428966.1| - 0.22 10.8 6.4 0.46 9.7 3.4 2.0 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Fib_alpha PF08702.5 gi|218884584|ref|YP_002428966.1| - 0.23 11.6 13.9 0.86 9.7 5.2 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family HAUS-augmin3 PF14932.1 gi|218884584|ref|YP_002428966.1| - 0.26 10.4 2.1 0.46 9.6 1.5 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 AAA_27 PF13514.1 gi|218884584|ref|YP_002428966.1| - 0.26 8.9 0.9 4.9 4.7 0.0 1.7 1 1 1 2 2 2 0 AAA domain DUF16 PF01519.11 gi|218884584|ref|YP_002428966.1| - 0.26 11.5 1.3 46 4.3 0.0 2.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 LOH1CR12 PF10158.4 gi|218884584|ref|YP_002428966.1| - 0.29 10.9 5.0 0.96 9.2 0.5 2.3 1 1 2 3 3 3 0 Tumour suppressor protein DUF972 PF06156.8 gi|218884584|ref|YP_002428966.1| - 0.32 11.3 1.6 2.6 8.4 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF2580 PF10824.3 gi|218884584|ref|YP_002428966.1| - 0.33 11.3 10.2 3 8.2 0.1 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2580) Filament PF00038.16 gi|218884584|ref|YP_002428966.1| - 0.33 10.3 1.5 3.8 6.8 1.0 1.9 1 1 1 2 2 2 0 Intermediate filament protein YlbD_coat PF14071.1 gi|218884584|ref|YP_002428966.1| - 0.35 10.9 13.0 0.3 11.1 1.8 3.2 1 1 2 3 3 3 0 Putative coat protein COG5 PF10392.4 gi|218884584|ref|YP_002428966.1| - 0.37 10.7 13.7 0.7 9.8 3.7 2.5 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF812 PF05667.6 gi|218884584|ref|YP_002428966.1| - 0.38 9.2 7.7 1.3 7.3 2.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Arfaptin PF06456.8 gi|218884584|ref|YP_002428966.1| - 0.49 9.7 2.8 0.98 8.7 0.9 1.9 1 1 1 2 2 2 0 Arfaptin-like domain Fmp27_WPPW PF10359.4 gi|218884584|ref|YP_002428966.1| - 0.49 8.7 3.8 1.3 7.3 1.9 1.9 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain She9_MDM33 PF05546.6 gi|218884584|ref|YP_002428966.1| - 0.76 9.2 2.2 1.9 8.0 0.2 2.1 1 1 1 2 2 2 0 She9 / Mdm33 family Cauli_DNA-bind PF03310.8 gi|218884584|ref|YP_002428966.1| - 0.94 9.3 8.6 3.7 7.4 1.5 2.5 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein AATF-Che1 PF13339.1 gi|218884584|ref|YP_002428966.1| - 1 9.4 4.5 18 5.4 3.1 2.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Syntaxin-6_N PF09177.6 gi|218884584|ref|YP_002428966.1| - 1.1 9.7 8.9 11 6.5 1.1 2.7 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Allexi_40kDa PF05549.6 gi|218884584|ref|YP_002428966.1| - 1.3 8.2 17.5 2.3 7.4 2.0 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein Cluap1 PF10234.4 gi|218884584|ref|YP_002428966.1| - 1.5 7.9 3.7 2.5 7.2 2.6 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 ISG65-75 PF11727.3 gi|218884584|ref|YP_002428966.1| - 1.8 7.5 6.9 1.9 7.4 2.8 1.9 1 1 1 2 2 2 0 Invariant surface glycoprotein AIP3 PF03915.8 gi|218884584|ref|YP_002428966.1| - 2.1 7.1 13.3 3.7 6.3 9.2 1.3 1 0 0 1 1 1 0 Actin interacting protein 3 DUF2450 PF10475.4 gi|218884584|ref|YP_002428966.1| - 2.8 6.7 5.2 3.4 6.4 1.2 1.9 1 1 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) LUC7 PF03194.10 gi|218884584|ref|YP_002428966.1| - 3.3 7.1 2.7 28 4.1 1.9 2.0 1 1 0 1 1 1 0 LUC7 N_terminus YjcZ PF13990.1 gi|218884584|ref|YP_002428966.1| - 3.9 6.5 5.2 7 5.6 0.6 2.6 1 1 1 3 3 3 0 YjcZ-like protein Sec5 PF15469.1 gi|218884584|ref|YP_002428966.1| - 5.1 6.7 7.5 15 5.2 4.2 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec5 T4SS PF07996.6 gi|218884584|ref|YP_002428966.1| - 7.6 6.3 12.9 0.5 10.1 4.9 1.8 2 0 0 2 2 2 0 Type IV secretion system proteins Peptidase_S8 PF00082.17 gi|218884585|ref|YP_002428967.1| - 9.9e-40 136.4 0.3 1.8e-39 135.6 0.2 1.4 1 0 0 1 1 1 1 Subtilase family UBN2 PF14223.1 gi|218884585|ref|YP_002428967.1| - 0.21 11.3 0.1 0.37 10.6 0.0 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type RHH_1 PF01402.16 gi|218884588|ref|YP_002428970.1| - 4.3e-07 29.5 0.3 1.3e-06 27.9 0.2 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NaeI PF09126.5 gi|218884588|ref|YP_002428970.1| - 0.033 12.8 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Restriction endonuclease NaeI RHH_3 PF12651.2 gi|218884588|ref|YP_002428970.1| - 0.098 12.4 0.1 0.37 10.5 0.1 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix domain Proteasome PF00227.21 gi|218884589|ref|YP_002428971.1| - 8.5e-54 181.7 0.0 9.5e-54 181.5 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit PIN PF01850.16 gi|218884592|ref|YP_002428974.1| - 7.5e-08 32.7 1.6 1e-07 32.3 1.1 1.2 1 0 0 1 1 1 1 PIN domain DUF4239 PF14023.1 gi|218884592|ref|YP_002428974.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4239) LEM PF03020.10 gi|218884593|ref|YP_002428975.1| - 0.0033 16.8 0.5 0.0088 15.4 0.0 1.8 2 0 0 2 2 2 1 LEM domain RHH_1 PF01402.16 gi|218884593|ref|YP_002428975.1| - 0.0073 16.1 0.3 0.072 13.0 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family YpjP PF14005.1 gi|218884593|ref|YP_002428975.1| - 0.032 14.0 0.0 0.034 13.9 0.0 1.1 1 0 0 1 1 1 0 YpjP-like protein Rep_fac_C PF08542.6 gi|218884593|ref|YP_002428975.1| - 0.036 14.0 0.1 1.9 8.5 0.0 2.0 1 1 1 2 2 2 0 Replication factor C C-terminal domain DUF2336 PF10098.4 gi|218884593|ref|YP_002428975.1| - 0.086 12.0 0.0 0.088 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2336) Rad50_zn_hook PF04423.9 gi|218884593|ref|YP_002428975.1| - 0.15 11.5 1.6 0.42 10.1 0.3 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif MMR_HSR1 PF01926.18 gi|218884595|ref|YP_002428977.1| - 3.7e-19 68.7 0.3 1e-18 67.3 0.0 1.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|218884595|ref|YP_002428977.1| - 3.3e-15 55.6 0.1 5.9e-15 54.8 0.1 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|218884595|ref|YP_002428977.1| - 9.2e-10 38.0 0.1 1.9e-09 37.0 0.1 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|218884595|ref|YP_002428977.1| - 1.8e-06 28.4 0.0 3.1e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|218884595|ref|YP_002428977.1| - 6e-05 22.5 0.3 0.0045 16.4 0.2 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|218884595|ref|YP_002428977.1| - 0.0031 17.3 1.2 0.36 10.6 0.0 2.4 2 0 0 2 2 2 1 Dynamin family Ras PF00071.17 gi|218884595|ref|YP_002428977.1| - 0.011 15.1 0.0 0.075 12.4 0.0 2.1 1 1 0 1 1 1 0 Ras family AAA_17 PF13207.1 gi|218884595|ref|YP_002428977.1| - 0.012 16.4 0.8 0.05 14.4 0.0 2.3 2 2 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|218884595|ref|YP_002428977.1| - 0.013 15.3 0.5 0.041 13.7 0.0 2.1 2 2 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|218884595|ref|YP_002428977.1| - 0.015 14.1 0.0 0.025 13.3 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_28 PF13521.1 gi|218884595|ref|YP_002428977.1| - 0.016 15.1 0.0 0.081 12.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AIG1 PF04548.11 gi|218884595|ref|YP_002428977.1| - 0.031 13.3 0.1 0.05 12.6 0.0 1.4 1 0 0 1 1 1 0 AIG1 family NTPase_1 PF03266.10 gi|218884595|ref|YP_002428977.1| - 0.032 13.9 0.1 0.079 12.6 0.1 1.7 1 0 0 1 1 1 0 NTPase cobW PF02492.14 gi|218884595|ref|YP_002428977.1| - 0.067 12.6 0.6 7.9 5.8 0.0 2.5 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|218884595|ref|YP_002428977.1| - 0.088 11.9 0.3 0.64 9.1 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|218884595|ref|YP_002428977.1| - 0.094 13.0 0.2 0.32 11.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|218884595|ref|YP_002428977.1| - 0.098 12.7 0.0 0.73 9.9 0.0 2.3 3 1 1 4 4 4 0 AAA domain AAA_16 PF13191.1 gi|218884595|ref|YP_002428977.1| - 0.1 12.5 0.0 0.48 10.3 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain RTC PF01137.16 gi|218884596|ref|YP_002428978.1| - 4e-81 271.1 0.0 4.5e-81 270.9 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|218884596|ref|YP_002428978.1| - 5.4e-25 87.3 0.0 9e-25 86.6 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_2 PF01467.21 gi|218884597|ref|YP_002428979.1| - 4.1e-13 49.6 0.0 5.4e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|218884597|ref|YP_002428979.1| - 0.067 12.2 0.0 3.7 6.4 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Beta-Casp PF10996.3 gi|218884598|ref|YP_002428980.1| - 5.6e-32 110.3 0.0 1.3e-31 109.1 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|218884598|ref|YP_002428980.1| - 1.7e-21 76.7 0.7 3.2e-21 75.8 0.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|218884598|ref|YP_002428980.1| - 6.8e-14 51.4 0.0 2.5e-13 49.6 0.0 2.1 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|218884598|ref|YP_002428980.1| - 1.7e-10 40.7 0.0 3.5e-09 36.4 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|218884598|ref|YP_002428980.1| - 0.0094 15.6 0.0 0.036 13.7 0.0 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain DUF4365 PF14280.1 gi|218884598|ref|YP_002428980.1| - 0.14 11.9 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4365) Proteasome PF00227.21 gi|218884599|ref|YP_002428981.1| - 2e-52 177.2 0.6 2.3e-52 177.0 0.4 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1899 PF08953.6 gi|218884599|ref|YP_002428981.1| - 0.053 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1899) Fe-ADH_2 PF13685.1 gi|218884600|ref|YP_002428982.1| - 1.2e-69 234.4 0.1 1.4e-69 234.1 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|218884600|ref|YP_002428982.1| - 8.2e-24 83.9 0.8 2.8e-23 82.1 0.6 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|218884600|ref|YP_002428982.1| - 1.7e-08 33.7 0.0 6.3e-05 22.0 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase UPF0146 PF03686.8 gi|218884600|ref|YP_002428982.1| - 0.024 14.4 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) UBA PF00627.26 gi|218884600|ref|YP_002428982.1| - 0.11 12.3 0.0 0.8 9.6 0.0 2.4 3 0 0 3 3 3 0 UBA/TS-N domain FKBP_C PF00254.23 gi|218884601|ref|YP_002428983.1| - 2.1e-10 40.4 0.0 8.2e-10 38.5 0.0 1.9 1 1 1 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase MS_channel PF00924.13 gi|218884601|ref|YP_002428983.1| - 0.047 13.0 0.4 0.12 11.6 0.3 1.7 1 0 0 1 1 1 0 Mechanosensitive ion channel DUF3553 PF12073.3 gi|218884601|ref|YP_002428983.1| - 0.069 12.4 0.1 0.15 11.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) AphA_like PF14557.1 gi|218884601|ref|YP_002428983.1| - 0.08 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator UPF0231 PF06062.6 gi|218884601|ref|YP_002428983.1| - 0.14 12.0 1.0 2.3 8.1 0.0 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0231) PUA PF01472.15 gi|218884602|ref|YP_002428984.1| - 3e-19 68.4 0.9 4e-19 68.1 0.6 1.2 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|218884602|ref|YP_002428984.1| - 0.0036 17.0 0.0 0.0059 16.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Toprim_4 PF13662.1 gi|218884603|ref|YP_002428985.1| - 4.9e-08 32.8 0.2 1.2e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|218884603|ref|YP_002428985.1| - 5.9e-05 22.9 0.1 0.00042 20.2 0.0 2.3 2 0 0 2 2 2 1 Toprim domain Rota_NSP4 PF01452.11 gi|218884603|ref|YP_002428985.1| - 0.31 10.3 4.3 0.088 12.1 0.2 2.0 2 0 0 2 2 2 0 Rotavirus non structural protein Ribosomal_L37e PF01907.14 gi|218884604|ref|YP_002428986.1| - 1.7e-25 88.5 11.9 1.9e-25 88.4 8.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|218884604|ref|YP_002428986.1| - 0.015 15.1 0.8 0.018 14.8 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon Stc1 PF12898.2 gi|218884604|ref|YP_002428986.1| - 0.031 14.3 0.4 0.035 14.1 0.3 1.2 1 0 0 1 1 1 0 Stc1 domain GCC2_GCC3 PF07699.8 gi|218884604|ref|YP_002428986.1| - 0.046 13.3 0.6 0.061 12.9 0.4 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 DNA_RNApol_7kD PF03604.8 gi|218884604|ref|YP_002428986.1| - 1.1 8.7 7.0 0.31 10.5 0.7 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-FPG_IleRS PF06827.9 gi|218884604|ref|YP_002428986.1| - 2.4 7.8 7.2 3.3 7.4 3.1 2.3 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS LSM PF01423.17 gi|218884605|ref|YP_002428987.1| - 5.1e-21 73.9 0.3 5.8e-21 73.8 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|218884605|ref|YP_002428987.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain DNA_pol_B PF00136.16 gi|218884606|ref|YP_002428988.1| - 9e-99 331.3 0.1 1.2e-98 330.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|218884606|ref|YP_002428988.1| - 1.1e-38 132.9 0.2 6e-38 130.5 0.1 2.0 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|218884606|ref|YP_002428988.1| - 7e-11 42.2 0.0 1.6e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|218884606|ref|YP_002428988.1| - 3.9e-06 26.5 0.0 7.4e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Exonuc_VII_S PF02609.11 gi|218884606|ref|YP_002428988.1| - 0.055 13.2 0.6 0.32 10.8 0.0 2.3 2 0 0 2 2 2 0 Exonuclease VII small subunit eRF1_1 PF03463.10 gi|218884607|ref|YP_002428989.1| - 5e-24 84.3 0.0 9.8e-24 83.4 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|218884607|ref|YP_002428989.1| - 2.1e-20 73.3 0.1 6.6e-20 71.7 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|218884607|ref|YP_002428989.1| - 1.8e-18 66.8 0.1 4.5e-18 65.5 0.1 1.7 1 0 0 1 1 1 1 eRF1 domain 3 NTP_transf_2 PF01909.18 gi|218884608|ref|YP_002428990.1| - 1.1e-06 28.9 0.5 3.4e-06 27.3 0.3 2.0 1 1 0 1 1 1 1 Nucleotidyltransferase domain ACP_syn_III_C PF08541.5 gi|218884608|ref|YP_002428990.1| - 0.068 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Peptidase_M50 PF02163.17 gi|218884609|ref|YP_002428991.1| - 3.7e-21 74.9 0.5 3.7e-21 74.9 0.3 2.8 2 2 0 2 2 2 1 Peptidase family M50 PDZ PF00595.19 gi|218884609|ref|YP_002428991.1| - 5.9e-08 32.7 0.0 1.2e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) PDZ_2 PF13180.1 gi|218884609|ref|YP_002428991.1| - 2e-06 27.5 0.0 3.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PALP PF00291.20 gi|218884612|ref|YP_002428994.1| - 5.7e-65 219.5 0.0 6.6e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|218884612|ref|YP_002428994.1| - 0.077 12.2 0.9 7.3 5.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|218884612|ref|YP_002428994.1| - 0.093 12.7 1.0 1.6 8.8 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin PF00301.15 gi|218884612|ref|YP_002428994.1| - 0.11 12.3 5.0 0.83 9.5 0.3 2.6 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|218884612|ref|YP_002428994.1| - 0.14 11.2 0.2 0.27 10.3 0.2 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com SprT-like PF10263.4 gi|218884612|ref|YP_002428994.1| - 0.25 10.9 0.4 0.36 10.4 0.3 1.2 1 0 0 1 1 1 0 SprT-like family OrfB_Zn_ribbon PF07282.6 gi|218884612|ref|YP_002428994.1| - 1 9.0 3.5 9.4 5.9 2.5 2.3 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|218884612|ref|YP_002428994.1| - 2.4 7.7 5.2 5.8 6.5 3.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S26e PF01283.14 gi|218884613|ref|YP_002428995.1| - 2.7e-31 108.1 2.8 2.9e-31 108.0 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|218884613|ref|YP_002428995.1| - 0.012 15.3 1.4 0.15 11.8 0.1 2.1 2 0 0 2 2 2 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|218884613|ref|YP_002428995.1| - 0.15 11.8 0.6 0.15 11.8 0.4 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger PIN PF01850.16 gi|218884614|ref|YP_002428996.1| - 6.5e-09 36.1 1.2 1.1e-08 35.3 0.8 1.4 1 1 0 1 1 1 1 PIN domain RHH_1 PF01402.16 gi|218884615|ref|YP_002428997.1| - 1.2e-06 28.1 1.4 1.4e-06 27.9 0.1 1.8 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|218884615|ref|YP_002428997.1| - 0.02 15.0 0.2 0.03 14.5 0.2 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) Methyltransf_18 PF12847.2 gi|218884617|ref|YP_002428999.1| - 5.1e-09 36.6 0.0 6.6e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218884617|ref|YP_002428999.1| - 2e-07 30.7 0.0 2.3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|218884617|ref|YP_002428999.1| - 3.3e-07 30.3 0.0 3.9e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|218884617|ref|YP_002428999.1| - 2.4e-06 26.7 0.0 3.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|218884617|ref|YP_002428999.1| - 2.7e-06 27.6 0.0 3.4e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|218884617|ref|YP_002428999.1| - 3.7e-06 26.3 0.1 1.6e-05 24.2 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 CMAS PF02353.15 gi|218884617|ref|YP_002428999.1| - 1.8e-05 23.9 0.0 1.9e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|218884617|ref|YP_002428999.1| - 9.5e-05 22.8 0.0 0.00013 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|218884617|ref|YP_002428999.1| - 9.7e-05 21.6 0.0 0.00011 21.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|218884617|ref|YP_002428999.1| - 0.00016 21.1 0.1 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|218884617|ref|YP_002428999.1| - 0.0036 16.8 0.0 0.0042 16.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|218884617|ref|YP_002428999.1| - 0.0045 16.3 0.0 0.0061 15.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|218884617|ref|YP_002428999.1| - 0.015 14.8 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF633 PF04816.7 gi|218884617|ref|YP_002428999.1| - 0.061 12.6 0.0 0.21 10.9 0.0 1.8 1 1 2 3 3 3 0 Family of unknown function (DUF633) Methyltransf_12 PF08242.7 gi|218884617|ref|YP_002428999.1| - 0.07 13.6 0.0 0.14 12.6 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|218884617|ref|YP_002428999.1| - 0.075 12.1 0.0 0.092 11.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|218884617|ref|YP_002428999.1| - 0.092 12.2 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|218884617|ref|YP_002428999.1| - 0.1 12.2 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_20 PF12147.3 gi|218884617|ref|YP_002428999.1| - 0.12 11.2 0.1 0.15 10.8 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase GCD14 PF08704.5 gi|218884619|ref|YP_002429001.1| - 6.8e-33 114.1 0.0 1.6e-29 103.1 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|218884619|ref|YP_002429001.1| - 1.8e-08 34.1 0.0 2.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218884619|ref|YP_002429001.1| - 2.1e-07 31.4 0.0 3.6e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|218884619|ref|YP_002429001.1| - 3.4e-06 26.7 0.0 6.2e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|218884619|ref|YP_002429001.1| - 0.00024 20.2 0.0 0.00035 19.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|218884619|ref|YP_002429001.1| - 0.00071 19.6 0.0 0.0012 18.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|218884619|ref|YP_002429001.1| - 0.00072 20.3 0.0 0.0015 19.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|218884619|ref|YP_002429001.1| - 0.0021 18.5 0.0 0.0063 16.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|218884619|ref|YP_002429001.1| - 0.0085 16.5 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain rRNA_methylase PF06962.7 gi|218884619|ref|YP_002429001.1| - 0.02 14.6 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 Putative rRNA methylase Methyltransf_25 PF13649.1 gi|218884619|ref|YP_002429001.1| - 0.022 15.1 0.0 0.032 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Gcd10p PF04189.8 gi|218884619|ref|YP_002429001.1| - 0.024 13.7 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Gcd10p family UPF0020 PF01170.13 gi|218884619|ref|YP_002429001.1| - 0.029 13.9 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|218884619|ref|YP_002429001.1| - 0.031 13.3 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.12 gi|218884619|ref|YP_002429001.1| - 0.052 12.4 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin RHH_1 PF01402.16 gi|218884621|ref|YP_002429003.1| - 1.2e-07 31.3 0.3 1.5e-07 30.9 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|218884621|ref|YP_002429003.1| - 6.6e-06 26.1 0.1 6.6e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|218884621|ref|YP_002429003.1| - 0.039 13.7 0.0 0.049 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) PMT_2 PF13231.1 gi|218884623|ref|YP_002429005.1| - 3.9e-12 46.3 15.3 3.9e-12 46.3 10.6 3.0 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|218884623|ref|YP_002429005.1| - 2.3e-07 30.4 19.3 2.3e-07 30.4 13.4 3.5 2 2 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1469 PF07332.6 gi|218884623|ref|YP_002429005.1| - 0.098 12.3 0.1 0.098 12.3 0.1 3.1 5 0 0 5 5 5 0 Protein of unknown function (DUF1469) DUF2545 PF10810.3 gi|218884624|ref|YP_002429006.1| - 0.011 16.1 1.4 0.011 16.1 0.9 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2545) DNA_pol_B PF00136.16 gi|218884625|ref|YP_002429007.1| - 1.2e-79 268.3 0.0 2.5e-79 267.2 0.0 1.5 2 0 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|218884625|ref|YP_002429007.1| - 4.6e-29 101.3 0.3 7.9e-29 100.5 0.2 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|218884625|ref|YP_002429007.1| - 1.8e-05 24.5 0.2 0.0001 22.1 0.0 2.5 3 0 0 3 3 3 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|218884625|ref|YP_002429007.1| - 0.014 14.9 0.0 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB NAC PF01849.13 gi|218884626|ref|YP_002429008.1| - 6.3e-13 48.0 3.0 1.2e-12 47.1 0.3 2.1 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|218884626|ref|YP_002429008.1| - 2.9e-06 26.9 0.1 1e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 UBA/TS-N domain Clp_N PF02861.15 gi|218884626|ref|YP_002429008.1| - 0.0027 17.6 0.0 1.4 8.9 0.0 2.3 2 0 0 2 2 2 2 Clp amino terminal domain RTC4 PF14474.1 gi|218884626|ref|YP_002429008.1| - 0.054 13.4 0.1 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 RTC4-like domain DUF4457 PF14652.1 gi|218884626|ref|YP_002429008.1| - 0.057 12.3 0.0 0.068 12.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4457) ABC_sub_bind PF04392.7 gi|218884626|ref|YP_002429008.1| - 0.07 12.0 0.1 0.074 12.0 0.0 1.1 1 0 0 1 1 1 0 ABC transporter substrate binding protein Beta-Casp PF10996.3 gi|218884627|ref|YP_002429009.1| - 4.1e-27 94.6 0.0 7.7e-27 93.7 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|218884627|ref|YP_002429009.1| - 1.2e-13 51.2 0.4 2.3e-13 50.2 0.3 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|218884627|ref|YP_002429009.1| - 4.6e-11 42.3 0.0 1.4e-10 40.8 0.0 1.8 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|218884627|ref|YP_002429009.1| - 5.1e-07 29.4 0.0 9.2e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|218884627|ref|YP_002429009.1| - 0.0097 15.6 0.0 0.026 14.2 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain GTP_EFTU PF00009.22 gi|218884628|ref|YP_002429010.1| - 1.1e-56 191.2 0.3 2.1e-56 190.3 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|218884628|ref|YP_002429010.1| - 3.9e-34 116.7 0.1 1.9e-33 114.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|218884628|ref|YP_002429010.1| - 7.4e-21 73.8 0.0 2.6e-20 72.0 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|218884628|ref|YP_002429010.1| - 9.1e-21 73.4 0.1 2.2e-20 72.2 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|218884628|ref|YP_002429010.1| - 8.2e-13 48.2 0.0 2.4e-12 46.8 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|218884628|ref|YP_002429010.1| - 1.9e-05 24.6 0.1 4.5e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|218884628|ref|YP_002429010.1| - 0.028 13.6 0.0 0.064 12.4 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|218884628|ref|YP_002429010.1| - 0.076 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Ras family Prefoldin_2 PF01920.15 gi|218884630|ref|YP_002429012.1| - 1.1e-18 66.9 13.3 1.2e-18 66.7 9.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|218884630|ref|YP_002429012.1| - 0.0011 18.6 5.9 0.19 11.3 0.1 2.2 1 1 1 2 2 2 2 Prefoldin subunit AAA_27 PF13514.1 gi|218884630|ref|YP_002429012.1| - 0.0049 14.6 4.4 0.0057 14.4 3.0 1.0 1 0 0 1 1 1 1 AAA domain STAT_alpha PF01017.15 gi|218884630|ref|YP_002429012.1| - 0.01 15.5 5.2 0.78 9.4 0.2 2.1 1 1 1 2 2 2 0 STAT protein, all-alpha domain DASH_Dad3 PF08656.5 gi|218884630|ref|YP_002429012.1| - 0.01 15.4 4.0 0.022 14.4 0.4 2.2 2 1 0 2 2 2 0 DASH complex subunit Dad3 FlaC_arch PF05377.6 gi|218884630|ref|YP_002429012.1| - 0.012 15.5 8.6 0.44 10.4 0.4 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3584 PF12128.3 gi|218884630|ref|YP_002429012.1| - 0.014 12.8 3.8 0.016 12.5 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TMF_DNA_bd PF12329.3 gi|218884630|ref|YP_002429012.1| - 0.017 14.8 10.3 0.35 10.7 3.5 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Sipho_Gp157 PF05565.6 gi|218884630|ref|YP_002429012.1| - 0.031 13.8 6.2 0.039 13.5 4.3 1.2 1 0 0 1 1 1 0 Siphovirus Gp157 SIR2_2 PF13289.1 gi|218884630|ref|YP_002429012.1| - 0.032 14.1 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 SIR2-like domain Vps8 PF12816.2 gi|218884630|ref|YP_002429012.1| - 0.034 13.4 0.5 0.04 13.1 0.3 1.2 1 1 0 1 1 1 0 Golgi CORVET complex core vacuolar protein 8 DUF4140 PF13600.1 gi|218884630|ref|YP_002429012.1| - 0.037 14.4 6.1 0.14 12.6 0.3 2.2 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) PP-binding_2 PF14573.1 gi|218884630|ref|YP_002429012.1| - 0.038 14.0 1.2 0.066 13.2 0.9 1.4 1 1 0 1 1 1 0 Acyl-carrier Orbi_VP3 PF01700.11 gi|218884630|ref|YP_002429012.1| - 0.063 10.7 1.1 0.064 10.6 0.8 1.1 1 0 0 1 1 1 0 Orbivirus VP3 (T2) protein DUF4164 PF13747.1 gi|218884630|ref|YP_002429012.1| - 0.089 12.9 5.1 0.75 9.9 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Snapin_Pallidin PF14712.1 gi|218884630|ref|YP_002429012.1| - 0.14 12.5 9.3 2 8.7 1.0 2.1 1 1 0 2 2 2 0 Snapin/Pallidin Glu-tRNAGln PF02686.10 gi|218884630|ref|YP_002429012.1| - 0.15 11.9 1.3 0.25 11.1 0.9 1.5 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit Spc7 PF08317.6 gi|218884630|ref|YP_002429012.1| - 0.16 10.6 8.4 0.2 10.2 5.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein RtcB PF01139.12 gi|218884630|ref|YP_002429012.1| - 0.17 10.8 1.7 0.2 10.6 1.2 1.1 1 0 0 1 1 1 0 tRNA-splicing ligase RtcB Tropomyosin PF00261.15 gi|218884630|ref|YP_002429012.1| - 0.18 10.8 9.7 0.76 8.8 6.6 1.9 1 1 0 1 1 1 0 Tropomyosin Dynamitin PF04912.9 gi|218884630|ref|YP_002429012.1| - 0.19 10.4 9.2 0.23 10.2 2.1 2.0 1 1 1 2 2 2 0 Dynamitin Cortex-I_coil PF09304.5 gi|218884630|ref|YP_002429012.1| - 0.27 11.2 9.7 1.4 8.9 1.1 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Nsp1_C PF05064.8 gi|218884630|ref|YP_002429012.1| - 0.28 10.8 9.6 0.14 11.8 1.6 2.2 1 1 1 2 2 2 0 Nsp1-like C-terminal region FbpA PF05833.6 gi|218884630|ref|YP_002429012.1| - 0.35 9.3 8.9 0.11 11.0 0.1 2.0 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) CDC37_N PF03234.9 gi|218884630|ref|YP_002429012.1| - 0.44 10.8 7.3 0.83 9.9 5.1 1.4 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF1465 PF07323.7 gi|218884630|ref|YP_002429012.1| - 0.45 10.0 4.0 1.2 8.6 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) Seryl_tRNA_N PF02403.17 gi|218884630|ref|YP_002429012.1| - 0.72 9.8 8.9 10 6.1 2.3 2.4 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain End3 PF12761.2 gi|218884630|ref|YP_002429012.1| - 0.73 9.4 7.3 0.99 9.0 5.1 1.3 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 bZIP_1 PF00170.16 gi|218884630|ref|YP_002429012.1| - 0.84 9.6 11.1 0.23 11.4 3.7 2.3 2 1 0 2 2 2 0 bZIP transcription factor MerR-DNA-bind PF09278.6 gi|218884630|ref|YP_002429012.1| - 1.1 9.7 5.2 14 6.1 0.3 2.2 2 0 0 2 2 2 0 MerR, DNA binding Med4 PF10018.4 gi|218884630|ref|YP_002429012.1| - 1.1 8.6 6.4 0.88 8.9 1.4 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Osmo_CC PF08946.5 gi|218884630|ref|YP_002429012.1| - 1.8 8.6 4.8 0.69 9.9 1.4 1.8 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Suppressor_APC PF11414.3 gi|218884630|ref|YP_002429012.1| - 1.9 8.3 5.9 0.5 10.1 1.1 2.0 2 0 0 2 2 2 0 Adenomatous polyposis coli tumour suppressor protein NEMO PF11577.3 gi|218884630|ref|YP_002429012.1| - 2.5 7.9 7.0 1.2 8.8 2.1 2.1 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO Troponin PF00992.15 gi|218884630|ref|YP_002429012.1| - 2.9 7.9 12.7 5.3 7.1 4.1 2.0 1 1 1 2 2 2 0 Troponin GreA_GreB_N PF03449.10 gi|218884630|ref|YP_002429012.1| - 3.2 7.8 7.1 7.1 6.7 0.3 2.8 2 1 0 2 2 2 0 Transcription elongation factor, N-terminal TPR_MLP1_2 PF07926.7 gi|218884630|ref|YP_002429012.1| - 5.4 6.7 8.9 28 4.4 6.2 1.9 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein APG6 PF04111.7 gi|218884630|ref|YP_002429012.1| - 8.5 5.3 8.9 5.2 6.0 0.7 1.8 1 1 1 2 2 2 0 Autophagy protein Apg6 Pcc1 PF09341.5 gi|218884631|ref|YP_002429013.1| - 2.6e-05 24.1 0.0 2.8e-05 24.0 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|218884632|ref|YP_002429014.1| - 1.6e-15 57.2 0.0 1.8e-15 57.1 0.0 1.3 1 1 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.14 gi|218884633|ref|YP_002429015.1| - 8e-32 108.9 3.3 8.5e-32 108.8 2.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|218884633|ref|YP_002429015.1| - 4.8e-08 32.6 2.6 7e-08 32.1 1.8 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|218884633|ref|YP_002429015.1| - 4.3e-07 29.4 0.6 5.8e-07 29.0 0.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|218884633|ref|YP_002429015.1| - 0.0056 16.9 2.9 0.012 15.9 2.0 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|218884633|ref|YP_002429015.1| - 0.0057 16.5 0.4 0.28 11.1 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|218884633|ref|YP_002429015.1| - 0.0057 15.9 0.0 0.0084 15.4 0.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4428 PF14471.1 gi|218884633|ref|YP_002429015.1| - 0.013 15.2 0.3 0.022 14.5 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) Rep_fac-A_C PF08646.5 gi|218884633|ref|YP_002429015.1| - 0.017 14.8 0.2 0.021 14.5 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Elf1 PF05129.8 gi|218884633|ref|YP_002429015.1| - 0.03 14.0 0.9 0.069 12.8 0.6 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.1 gi|218884633|ref|YP_002429015.1| - 0.058 13.3 1.3 0.22 11.4 0.0 2.0 1 1 1 2 2 2 0 CpXC protein DZR PF12773.2 gi|218884633|ref|YP_002429015.1| - 0.069 12.9 0.7 0.21 11.4 0.5 1.5 1 1 1 2 2 2 0 Double zinc ribbon DUF1610 PF07754.6 gi|218884633|ref|YP_002429015.1| - 0.087 12.9 0.3 0.087 12.9 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DUF2318 PF10080.4 gi|218884633|ref|YP_002429015.1| - 0.11 12.2 0.1 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-Sec23_Sec24 PF04810.10 gi|218884633|ref|YP_002429015.1| - 0.14 11.7 0.8 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-HYPF PF07503.7 gi|218884633|ref|YP_002429015.1| - 0.15 11.4 0.9 12 5.3 0.0 2.3 2 0 0 2 2 2 0 HypF finger DUF2082 PF09855.4 gi|218884633|ref|YP_002429015.1| - 0.15 11.8 0.3 8.3 6.3 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C2H2_4 PF13894.1 gi|218884633|ref|YP_002429015.1| - 0.17 12.2 1.2 11 6.6 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.1 gi|218884633|ref|YP_002429015.1| - 0.18 11.8 6.0 0.23 11.4 0.4 2.4 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prim_Zn_Ribbon PF08273.7 gi|218884633|ref|YP_002429015.1| - 0.22 11.6 4.5 0.42 10.7 3.1 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Ogr_Delta PF04606.7 gi|218884633|ref|YP_002429015.1| - 0.36 10.5 2.2 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|218884633|ref|YP_002429015.1| - 0.65 9.2 7.5 1.8 7.8 1.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.1 gi|218884633|ref|YP_002429015.1| - 1.3 8.9 5.5 2.3 8.0 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) UPF0547 PF10571.4 gi|218884633|ref|YP_002429015.1| - 1.3 8.7 6.3 5.6 6.7 2.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|218884633|ref|YP_002429015.1| - 1.4 8.5 7.5 6.9 6.3 0.3 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|218884633|ref|YP_002429015.1| - 3.7 7.1 9.5 5.2 6.6 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|218884633|ref|YP_002429015.1| - 5.3 7.5 8.3 1.5 9.2 1.6 2.2 1 1 1 2 2 2 0 Zinc-finger double domain RNase_PH PF01138.16 gi|218884634|ref|YP_002429016.1| - 3e-26 92.2 0.0 5.3e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|218884634|ref|YP_002429016.1| - 1.9e-11 43.7 0.2 4.6e-11 42.4 0.2 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|218884635|ref|YP_002429017.1| - 1.2e-35 122.7 0.0 1.5e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|218884635|ref|YP_002429017.1| - 5.7e-14 51.7 0.4 1.1e-13 50.8 0.3 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|218884636|ref|YP_002429018.1| - 3.6e-07 29.7 0.0 8.1e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|218884636|ref|YP_002429018.1| - 0.0003 20.2 0.4 0.0011 18.4 0.0 2.1 2 1 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|218884636|ref|YP_002429018.1| - 0.0054 16.3 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 KH domain SBDS PF01172.13 gi|218884637|ref|YP_002429019.1| - 3.8e-26 90.6 0.2 6e-26 90.0 0.1 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|218884637|ref|YP_002429019.1| - 2.5e-21 75.6 1.6 3.6e-21 75.1 1.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|218884637|ref|YP_002429019.1| - 0.0042 16.9 0.0 0.015 15.1 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G C-terminus DUF59 PF01883.14 gi|218884637|ref|YP_002429019.1| - 0.082 12.9 0.1 0.92 9.5 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF59 Proteasome PF00227.21 gi|218884638|ref|YP_002429020.1| - 4.1e-54 182.7 0.3 5.6e-54 182.3 0.2 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|218884638|ref|YP_002429020.1| - 2e-15 55.7 0.3 8e-15 53.8 0.2 2.1 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Tol_Tol_Ttg2 PF05494.7 gi|218884638|ref|YP_002429020.1| - 0.067 12.7 0.4 0.49 9.9 0.1 2.0 2 0 0 2 2 2 0 Toluene tolerance, Ttg2 RNase_P_Rpp14 PF01900.14 gi|218884639|ref|YP_002429021.1| - 7.2e-15 54.8 0.0 1.1e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family DUF4257 PF14074.1 gi|218884639|ref|YP_002429021.1| - 0.047 13.3 1.0 2 8.1 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4257) RNase_P_p30 PF01876.11 gi|218884640|ref|YP_002429022.1| - 1.1e-14 53.9 0.0 1.4e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.12 gi|218884641|ref|YP_002429023.1| - 3.2e-23 82.0 0.0 4.2e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 RNA binding DUF2760 PF10816.3 gi|218884641|ref|YP_002429023.1| - 0.018 14.5 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2760) CRAL_TRIO_2 PF13716.1 gi|218884641|ref|YP_002429023.1| - 0.028 14.3 0.1 0.076 12.9 0.0 1.7 1 1 1 2 2 2 0 Divergent CRAL/TRIO domain Ribosomal_L15e PF00827.12 gi|218884642|ref|YP_002429024.1| - 4e-81 271.1 6.2 5e-81 270.8 4.3 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.5 gi|218884643|ref|YP_002429025.1| - 1.7e-33 115.0 0.0 3.8e-33 113.9 0.0 1.6 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|218884643|ref|YP_002429025.1| - 4.7e-19 68.4 0.0 9.7e-19 67.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|218884643|ref|YP_002429025.1| - 2.8e-13 49.4 0.0 6.7e-13 48.2 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|218884643|ref|YP_002429025.1| - 7e-07 28.6 0.6 1.4e-05 24.4 0.1 2.9 3 0 0 3 3 3 1 Ferrous iron transport protein B phiKZ_IP PF12699.2 gi|218884643|ref|YP_002429025.1| - 0.0061 15.5 0.0 0.0085 15.0 0.0 1.2 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins GTP_EFTU PF00009.22 gi|218884643|ref|YP_002429025.1| - 0.008 15.6 0.2 2.5 7.5 0.0 3.0 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain AAA_23 PF13476.1 gi|218884643|ref|YP_002429025.1| - 0.0099 16.2 1.0 0.027 14.8 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|218884643|ref|YP_002429025.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|218884643|ref|YP_002429025.1| - 0.019 15.2 0.1 0.063 13.5 0.0 1.8 2 0 0 2 2 2 0 ABC transporter YchF-GTPase_C PF06071.8 gi|218884643|ref|YP_002429025.1| - 0.025 14.3 0.0 1.8 8.4 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF933) AAA_21 PF13304.1 gi|218884643|ref|YP_002429025.1| - 0.029 14.3 1.6 0.069 13.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|218884643|ref|YP_002429025.1| - 0.03 14.0 0.1 0.063 12.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Abhydrolase_6 PF12697.2 gi|218884643|ref|YP_002429025.1| - 0.092 12.6 0.0 1 9.1 0.0 1.9 1 1 1 2 2 2 0 Alpha/beta hydrolase family DUF2095 PF09868.4 gi|218884644|ref|YP_002429026.1| - 3.6e-18 65.5 0.2 7.9e-17 61.2 0.2 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) HeH PF12949.2 gi|218884644|ref|YP_002429026.1| - 0.016 14.7 0.2 0.53 9.8 0.0 2.3 2 0 0 2 2 2 0 HeH/LEM domain DUF2007 PF09413.5 gi|218884644|ref|YP_002429026.1| - 0.084 12.7 0.2 0.69 9.7 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF2007) NTP_transferase PF00483.18 gi|218884645|ref|YP_002429027.1| - 6.5e-30 104.2 0.0 1.1e-29 103.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|218884645|ref|YP_002429027.1| - 1.6e-16 58.9 17.7 7.5e-06 25.2 0.6 5.5 3 2 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|218884645|ref|YP_002429027.1| - 1.3e-12 48.0 0.0 1.8e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|218884645|ref|YP_002429027.1| - 4.4e-06 26.3 0.0 6.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|218884645|ref|YP_002429027.1| - 0.0044 16.5 2.1 0.68 9.5 0.1 3.4 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase CTP_transf_3 PF02348.14 gi|218884645|ref|YP_002429027.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase Ribosomal_S3Ae PF01015.13 gi|218884646|ref|YP_002429028.1| - 8.2e-75 250.4 2.6 9.2e-75 250.2 1.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Post_transc_reg PF13797.1 gi|218884646|ref|YP_002429028.1| - 0.0079 15.7 4.8 0.049 13.2 0.1 2.7 3 0 0 3 3 3 2 Post-transcriptional regulator Ribosomal_S13_N PF08069.7 gi|218884649|ref|YP_002429031.1| - 3.3e-25 87.7 0.2 8.8e-25 86.3 0.1 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|218884649|ref|YP_002429031.1| - 2.6e-20 71.9 0.4 3.6e-20 71.4 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ham1p_like PF01725.11 gi|218884650|ref|YP_002429032.1| - 7.7e-46 155.8 0.0 8.8e-46 155.6 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.17 gi|218884651|ref|YP_002429033.1| - 4.5e-16 58.7 0.0 7.1e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|218884651|ref|YP_002429033.1| - 1.2e-11 44.7 0.6 3.9e-05 23.5 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|218884651|ref|YP_002429033.1| - 4.9e-10 39.0 0.0 6.4e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|218884651|ref|YP_002429033.1| - 5.4e-10 38.6 0.0 7.1e-10 38.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|218884651|ref|YP_002429033.1| - 9.7e-08 31.3 0.0 1.2e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.15 gi|218884651|ref|YP_002429033.1| - 0.013 14.7 0.0 0.017 14.2 0.0 1.4 1 1 0 1 1 1 0 Ecdysteroid kinase WaaY PF06176.6 gi|218884651|ref|YP_002429033.1| - 0.051 12.7 0.1 0.068 12.3 0.1 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Peptidase_M22 PF00814.20 gi|218884652|ref|YP_002429034.1| - 3.7e-70 236.4 0.0 4.4e-70 236.2 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family BcrAD_BadFG PF01869.15 gi|218884652|ref|YP_002429034.1| - 0.052 12.8 0.0 1 8.5 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Ribosomal_S24e PF01282.14 gi|218884653|ref|YP_002429035.1| - 5.8e-23 80.5 0.1 7.3e-23 80.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|218884654|ref|YP_002429036.1| - 3.2e-14 52.3 0.1 5.1e-14 51.6 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|218884655|ref|YP_002429037.1| - 4.4e-14 52.1 0.1 5.2e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-C4H2 PF10146.4 gi|218884655|ref|YP_002429037.1| - 0.0014 18.7 1.4 0.0016 18.5 1.0 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein DZR PF12773.2 gi|218884655|ref|YP_002429037.1| - 0.0021 17.8 1.7 0.0028 17.4 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|218884655|ref|YP_002429037.1| - 0.0027 17.1 1.3 0.0047 16.3 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|218884655|ref|YP_002429037.1| - 0.0072 15.9 4.5 0.012 15.2 3.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-P11 PF03854.9 gi|218884655|ref|YP_002429037.1| - 0.0074 15.7 0.2 0.012 15.1 0.2 1.3 1 0 0 1 1 1 1 P-11 zinc finger zf-ribbon_3 PF13248.1 gi|218884655|ref|YP_002429037.1| - 0.0097 15.0 2.7 0.014 14.5 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain NRDD PF13597.1 gi|218884655|ref|YP_002429037.1| - 0.037 12.1 0.2 0.044 11.8 0.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF2072 PF09845.4 gi|218884655|ref|YP_002429037.1| - 0.042 13.7 1.1 0.23 11.4 0.4 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) zf-C3HC4_3 PF13920.1 gi|218884655|ref|YP_002429037.1| - 0.063 12.9 2.6 0.093 12.4 1.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|218884655|ref|YP_002429037.1| - 0.089 12.4 0.2 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Fimbrial_PilY2 PF14481.1 gi|218884655|ref|YP_002429037.1| - 0.092 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 TF_Zn_Ribbon PF08271.7 gi|218884655|ref|YP_002429037.1| - 0.13 11.5 0.1 0.13 11.5 0.0 1.6 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|218884655|ref|YP_002429037.1| - 0.16 12.0 0.5 0.16 12.0 0.4 1.9 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|218884655|ref|YP_002429037.1| - 0.17 12.2 2.5 0.44 10.8 1.7 1.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|218884655|ref|YP_002429037.1| - 0.2 11.6 4.5 5 7.1 0.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|218884655|ref|YP_002429037.1| - 0.45 10.5 3.0 16 5.6 3.2 2.0 1 1 1 2 2 2 0 zinc-finger zf-C4_Topoisom PF01396.14 gi|218884655|ref|YP_002429037.1| - 1.5 8.3 5.1 8.9 5.9 0.4 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger SHS2_Rpb7-N PF03876.12 gi|218884656|ref|YP_002429038.1| - 2.3e-16 59.6 0.2 9.3e-16 57.7 0.0 2.0 2 0 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|218884656|ref|YP_002429038.1| - 1.9e-07 31.0 1.8 7.4e-07 29.1 0.1 2.4 2 1 1 3 3 3 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|218884656|ref|YP_002429038.1| - 0.016 15.3 0.0 0.035 14.3 0.0 1.5 1 1 0 1 1 1 0 RNA polymerase III subunit Rpc25 Fcf1 PF04900.7 gi|218884657|ref|YP_002429039.1| - 4.6e-12 45.9 0.0 7.6e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Fcf1 PIN PF01850.16 gi|218884657|ref|YP_002429039.1| - 0.0006 20.1 0.4 0.0036 17.6 0.3 1.9 1 1 0 1 1 1 1 PIN domain RNase_Zc3h12a PF11977.3 gi|218884657|ref|YP_002429039.1| - 0.056 13.2 0.0 0.07 12.9 0.0 1.2 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain AAA_18 PF13238.1 gi|218884657|ref|YP_002429039.1| - 0.11 12.8 0.3 0.13 12.5 0.2 1.2 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|218884658|ref|YP_002429040.1| - 2.6e-42 144.3 0.0 4.2e-42 143.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|218884658|ref|YP_002429040.1| - 1.3e-26 92.4 0.8 3e-26 91.2 0.6 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|218884658|ref|YP_002429040.1| - 1.6e-05 24.9 0.8 5.3e-05 23.2 0.5 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|218884658|ref|YP_002429040.1| - 6.2e-05 22.5 0.7 0.25 10.8 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|218884658|ref|YP_002429040.1| - 0.0011 18.9 0.0 0.0031 17.4 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|218884658|ref|YP_002429040.1| - 0.011 14.9 0.5 2.1 7.6 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|218884658|ref|YP_002429040.1| - 0.055 13.9 0.0 0.23 11.9 0.0 2.1 1 1 0 1 1 1 0 Miro-like protein Ribosomal_S6e PF01092.14 gi|218884659|ref|YP_002429041.1| - 3.4e-30 104.3 0.1 7.5e-30 103.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|218884660|ref|YP_002429042.1| - 2e-34 118.7 0.0 4.9e-34 117.3 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|218884660|ref|YP_002429042.1| - 1.1e-21 76.7 0.1 2.7e-21 75.5 0.0 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|218884660|ref|YP_002429042.1| - 1.5e-21 75.8 1.3 4.4e-21 74.3 0.9 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|218884660|ref|YP_002429042.1| - 1.6e-11 44.1 0.6 2.3e-10 40.4 0.0 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|218884660|ref|YP_002429042.1| - 3.4e-06 27.0 0.0 9.1e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|218884660|ref|YP_002429042.1| - 4.1e-05 24.0 0.1 0.00016 22.1 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein ATP_bind_1 PF03029.12 gi|218884660|ref|YP_002429042.1| - 0.00022 20.8 0.0 0.001 18.6 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|218884660|ref|YP_002429042.1| - 0.0013 18.8 0.0 0.0056 16.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|218884660|ref|YP_002429042.1| - 0.005 16.6 0.1 0.06 13.1 0.0 2.5 3 0 0 3 3 3 1 Dynamin family Arf PF00025.16 gi|218884660|ref|YP_002429042.1| - 0.0062 15.7 0.0 3.7 6.7 0.0 3.1 3 0 0 3 3 3 1 ADP-ribosylation factor family Ras PF00071.17 gi|218884660|ref|YP_002429042.1| - 0.035 13.4 0.0 0.23 10.8 0.0 2.3 1 1 0 1 1 1 0 Ras family PduV-EutP PF10662.4 gi|218884660|ref|YP_002429042.1| - 0.099 12.1 0.1 0.72 9.3 0.0 2.4 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Ribosomal_L24e PF01246.15 gi|218884661|ref|YP_002429043.1| - 6.8e-22 77.1 1.0 7.5e-22 76.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|218884661|ref|YP_002429043.1| - 1.1e-05 24.9 1.1 1.8e-05 24.2 0.8 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif SOBP PF15279.1 gi|218884661|ref|YP_002429043.1| - 0.0059 17.0 0.3 0.0074 16.7 0.2 1.1 1 0 0 1 1 1 1 Sine oculis-binding protein DUF2175 PF09943.4 gi|218884661|ref|YP_002429043.1| - 0.042 13.8 0.2 0.054 13.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF2116 PF09889.4 gi|218884661|ref|YP_002429043.1| - 0.072 12.8 1.2 0.69 9.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ribosomal_S28e PF01200.13 gi|218884662|ref|YP_002429044.1| - 8.4e-30 102.3 6.1 1.1e-29 101.9 4.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|218884662|ref|YP_002429044.1| - 0.039 13.6 1.5 0.67 9.7 0.1 3.1 2 1 0 2 2 2 0 KOW motif Ribosomal_L7Ae PF01248.21 gi|218884664|ref|YP_002429046.1| - 1.4e-31 107.8 0.5 1.8e-31 107.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|218884664|ref|YP_002429046.1| - 0.003 17.2 0.1 0.0047 16.6 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|218884664|ref|YP_002429046.1| - 0.0045 16.8 0.0 0.0054 16.5 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 tRNA-synt_1c PF00749.16 gi|218884665|ref|YP_002429047.1| - 9.7e-73 244.5 0.0 1.5e-72 243.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|218884665|ref|YP_002429047.1| - 4.8e-20 71.9 0.0 1.1e-19 70.7 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF2118 PF09891.4 gi|218884666|ref|YP_002429048.1| - 8.2e-14 51.5 0.0 9.4e-14 51.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) FMN_dh PF01070.13 gi|218884667|ref|YP_002429049.1| - 4.6e-20 71.7 0.0 3.6e-12 45.7 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Memo PF01875.12 gi|218884668|ref|YP_002429050.1| - 2.6e-81 272.5 0.0 2.9e-81 272.3 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|218884668|ref|YP_002429050.1| - 0.0035 16.3 0.0 0.0076 15.2 0.0 1.5 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|218884669|ref|YP_002429051.1| - 1.3e-41 142.1 0.0 3.1e-21 75.5 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_pol_N PF01194.12 gi|218884670|ref|YP_002429052.1| - 2.6e-30 104.2 0.2 3e-30 104.0 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|218884670|ref|YP_002429052.1| - 0.012 15.6 0.1 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|218884671|ref|YP_002429053.1| - 4.7e-35 120.4 0.0 5.4e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 MR_MLE_C PF13378.1 gi|218884671|ref|YP_002429053.1| - 0.069 13.1 0.0 0.087 12.8 0.0 1.2 1 0 0 1 1 1 0 Enolase C-terminal domain-like Ribosomal_L13 PF00572.13 gi|218884672|ref|YP_002429054.1| - 6.1e-29 100.6 0.0 7.2e-29 100.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|218884673|ref|YP_002429055.1| - 3e-14 53.4 0.1 3.8e-14 53.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Carla_C4 PF01623.12 gi|218884673|ref|YP_002429055.1| - 0.074 12.8 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein RNA_pol_A_bac PF01000.21 gi|218884674|ref|YP_002429056.1| - 4.8e-30 103.9 0.0 9.1e-30 103.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|218884674|ref|YP_002429056.1| - 2.1e-12 45.9 0.0 2.8e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_6 PF12837.2 gi|218884674|ref|YP_002429056.1| - 8.1e-08 31.8 12.9 5.4e-05 22.8 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|218884674|ref|YP_002429056.1| - 1.4e-07 31.8 10.3 3.6e-06 27.2 8.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|218884674|ref|YP_002429056.1| - 5.9e-07 29.6 11.8 1.1e-06 28.7 8.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|218884674|ref|YP_002429056.1| - 6.8e-07 28.6 12.9 0.00033 20.1 1.1 3.2 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|218884674|ref|YP_002429056.1| - 1.4e-06 27.9 11.6 3.8e-06 26.6 8.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|218884674|ref|YP_002429056.1| - 1e-05 25.1 12.3 0.0005 19.8 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|218884674|ref|YP_002429056.1| - 2e-05 24.3 10.5 3.8e-05 23.4 7.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|218884674|ref|YP_002429056.1| - 2.6e-05 24.8 4.1 0.1 13.3 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|218884674|ref|YP_002429056.1| - 0.00021 21.3 11.9 0.078 13.3 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|218884674|ref|YP_002429056.1| - 0.00025 21.3 14.3 0.041 14.4 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|218884674|ref|YP_002429056.1| - 0.00057 20.2 5.1 0.057 13.8 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|218884674|ref|YP_002429056.1| - 0.0013 18.6 10.6 0.0044 17.0 7.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|218884674|ref|YP_002429056.1| - 0.19 11.6 6.4 0.72 9.7 4.3 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|218884674|ref|YP_002429056.1| - 0.25 11.7 12.2 23 5.4 7.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|218884674|ref|YP_002429056.1| - 0.38 11.3 11.0 0.36 11.4 0.9 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Ribosomal_S11 PF00411.14 gi|218884675|ref|YP_002429057.1| - 1.7e-43 147.2 0.4 2e-43 147.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|218884676|ref|YP_002429058.1| - 7.9e-15 54.0 0.3 7.9e-15 54.0 0.2 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|218884676|ref|YP_002429058.1| - 1.5e-05 25.2 1.2 2.9e-05 24.3 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain YlaH PF14036.1 gi|218884676|ref|YP_002429058.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 YlaH-like protein Ribosomal_S13 PF00416.17 gi|218884677|ref|YP_002429059.1| - 3.8e-27 94.8 0.0 5.3e-27 94.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Ribosomal_S10 PF00338.17 gi|218884678|ref|YP_002429060.1| - 6.7e-29 99.5 0.6 7.8e-29 99.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|218884679|ref|YP_002429061.1| - 2.3e-56 190.2 0.0 3.8e-56 189.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|218884679|ref|YP_002429061.1| - 4.9e-30 103.6 0.6 1.3e-29 102.3 0.1 2.0 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|218884679|ref|YP_002429061.1| - 4.6e-16 58.6 2.9 1e-15 57.5 2.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|218884679|ref|YP_002429061.1| - 3.4e-07 29.8 2.9 9.6e-07 28.3 2.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|218884679|ref|YP_002429061.1| - 1e-05 25.4 0.0 3.1e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|218884679|ref|YP_002429061.1| - 0.0044 17.4 0.2 0.039 14.4 0.2 2.2 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|218884679|ref|YP_002429061.1| - 0.036 13.8 0.0 3.6 7.3 0.0 2.4 1 1 0 1 1 1 0 Dynamin family Gtr1_RagA PF04670.7 gi|218884679|ref|YP_002429061.1| - 0.042 12.9 0.0 0.15 11.1 0.0 1.9 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|218884679|ref|YP_002429061.1| - 0.084 12.0 0.1 0.31 10.2 0.0 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit YajC PF02699.10 gi|218884679|ref|YP_002429061.1| - 0.085 12.5 0.3 0.18 11.4 0.2 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit Ribosomal_S7 PF00177.16 gi|218884680|ref|YP_002429062.1| - 2.3e-45 153.8 0.1 2.7e-45 153.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|218884681|ref|YP_002429063.1| - 2.1e-38 130.4 0.1 2.4e-38 130.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|218884682|ref|YP_002429064.1| - 7.3e-14 51.0 2.9 2.5e-08 33.3 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|218884682|ref|YP_002429064.1| - 1.7e-12 46.9 1.8 3.8e-11 42.6 0.1 2.4 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|218884682|ref|YP_002429064.1| - 4.9e-09 35.6 0.2 0.0018 17.8 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|218884682|ref|YP_002429064.1| - 1.8e-07 30.6 0.7 0.0014 18.2 0.0 2.5 2 0 0 2 2 2 2 KH domain MTP18 PF10558.4 gi|218884682|ref|YP_002429064.1| - 0.13 12.0 0.0 0.23 11.3 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial 18 KDa protein (MTP18) Ribosomal_L7Ae PF01248.21 gi|218884683|ref|YP_002429065.1| - 8.7e-18 63.6 0.0 9.6e-18 63.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|218884684|ref|YP_002429066.1| - 4.4e-53 180.3 0.5 6.1e-53 179.8 0.4 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|218884684|ref|YP_002429066.1| - 0.019 14.5 0.9 0.12 11.9 0.1 2.6 2 1 1 3 3 3 0 NAC domain MerR-DNA-bind PF09278.6 gi|218884684|ref|YP_002429066.1| - 0.21 12.0 0.1 0.21 12.0 0.1 3.8 4 0 0 4 4 4 0 MerR, DNA binding KGG PF10685.4 gi|218884684|ref|YP_002429066.1| - 0.28 11.1 4.4 0.8 9.7 1.4 2.4 2 0 0 2 2 2 0 Stress-induced bacterial acidophilic repeat motif SAS4 PF15460.1 gi|218884684|ref|YP_002429066.1| - 3.7 7.4 6.8 0.38 10.6 0.2 2.8 4 0 0 4 4 4 0 Something about silencing, SAS, complex subunit 4 RNA_pol_Rpb1_1 PF04997.7 gi|218884685|ref|YP_002429067.1| - 8e-90 301.4 0.0 7.7e-89 298.2 0.0 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|218884685|ref|YP_002429067.1| - 6.2e-70 234.4 0.0 1.1e-69 233.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|218884685|ref|YP_002429067.1| - 8.7e-38 129.5 0.0 1.9e-37 128.3 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|218884685|ref|YP_002429067.1| - 1.5e-28 99.8 0.0 2.7e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|218884685|ref|YP_002429067.1| - 6.1e-26 90.2 0.0 1.2e-25 89.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 zf-ribbon_3 PF13248.1 gi|218884685|ref|YP_002429067.1| - 0.0092 15.1 0.7 0.0092 15.1 0.5 3.1 2 1 0 2 2 2 1 zinc-ribbon domain Nop16 PF09420.5 gi|218884685|ref|YP_002429067.1| - 0.09 12.8 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Ribosome biogenesis protein Nop16 zinc_ribbon_2 PF13240.1 gi|218884685|ref|YP_002429067.1| - 0.4 10.2 8.7 1 8.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|218884685|ref|YP_002429067.1| - 0.68 10.0 7.3 0.9 9.6 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_3 PF14369.1 gi|218884685|ref|YP_002429067.1| - 0.73 9.8 2.6 6.5 6.8 0.1 2.9 3 0 0 3 3 3 0 zinc-finger DZR PF12773.2 gi|218884685|ref|YP_002429067.1| - 4.2 7.2 6.5 7.2 6.5 0.0 2.6 2 1 0 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|218884685|ref|YP_002429067.1| - 4.9 6.8 6.1 2.5 7.8 0.0 2.9 3 0 0 3 3 3 0 Putative transposase DNA-binding domain RNA_pol_Rpb2_6 PF00562.23 gi|218884686|ref|YP_002429068.1| - 5.9e-129 430.1 0.0 8.1e-129 429.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|218884686|ref|YP_002429068.1| - 2.2e-50 170.4 0.4 3.1e-50 169.9 0.3 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.15 gi|218884686|ref|YP_002429068.1| - 1.1e-25 89.6 0.0 2.3e-25 88.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|218884686|ref|YP_002429068.1| - 1.8e-25 88.4 0.0 4.3e-25 87.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.9 gi|218884686|ref|YP_002429068.1| - 8e-24 84.1 1.8 4.6e-23 81.6 0.4 2.6 2 1 0 2 2 2 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.8 gi|218884686|ref|YP_002429068.1| - 6.8e-22 77.0 0.8 1.9e-21 75.6 0.6 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|218884686|ref|YP_002429068.1| - 6.2e-14 51.6 0.6 1.6e-13 50.4 0.4 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb5_C PF01191.14 gi|218884687|ref|YP_002429069.1| - 5.8e-33 112.3 0.0 6.5e-33 112.1 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Cdc6_C PF09079.6 gi|218884688|ref|YP_002429070.1| - 9.9e-17 60.4 1.9 2.2e-16 59.3 0.1 2.5 2 1 1 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|218884688|ref|YP_002429070.1| - 1.9e-11 44.2 0.1 9.4e-11 41.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|218884688|ref|YP_002429070.1| - 4.8e-11 42.9 0.0 7.8e-10 39.0 0.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|218884688|ref|YP_002429070.1| - 1.7e-09 37.9 0.0 4.3e-09 36.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|218884688|ref|YP_002429070.1| - 8.6e-08 32.1 0.2 1.7e-07 31.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase DUF2075 PF09848.4 gi|218884688|ref|YP_002429070.1| - 2.3e-05 23.5 0.0 3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|218884688|ref|YP_002429070.1| - 2.3e-05 23.4 0.0 3.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|218884688|ref|YP_002429070.1| - 0.00018 20.5 0.0 0.0004 19.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|218884688|ref|YP_002429070.1| - 0.0025 17.4 0.0 0.0044 16.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|218884688|ref|YP_002429070.1| - 0.0059 15.5 0.1 0.015 14.2 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|218884688|ref|YP_002429070.1| - 0.0068 16.3 0.1 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|218884688|ref|YP_002429070.1| - 0.012 15.0 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|218884688|ref|YP_002429070.1| - 0.014 15.0 0.2 0.11 12.1 0.1 2.0 1 1 0 1 1 1 0 Bacterial dnaA protein DEAD PF00270.24 gi|218884688|ref|YP_002429070.1| - 0.014 14.8 0.3 2.7 7.4 0.1 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|218884688|ref|YP_002429070.1| - 0.038 13.7 0.0 0.12 12.1 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain PIF1 PF05970.9 gi|218884688|ref|YP_002429070.1| - 0.039 12.9 0.0 0.16 10.8 0.0 1.9 2 0 0 2 2 2 0 PIF1-like helicase AAA_24 PF13479.1 gi|218884688|ref|YP_002429070.1| - 0.041 13.4 1.5 0.11 12.0 0.3 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|218884688|ref|YP_002429070.1| - 0.061 13.6 0.2 0.14 12.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|218884688|ref|YP_002429070.1| - 0.065 12.6 0.0 5.1 6.4 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|218884688|ref|YP_002429070.1| - 0.092 12.2 0.0 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|218884688|ref|YP_002429070.1| - 0.096 13.5 3.1 0.31 11.8 2.1 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|218884688|ref|YP_002429070.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|218884688|ref|YP_002429070.1| - 0.16 11.3 0.3 6 6.2 0.2 2.4 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|218884688|ref|YP_002429070.1| - 0.21 11.3 1.7 1.4 8.6 0.4 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF99 PF01949.11 gi|218884689|ref|YP_002429071.1| - 5.2e-36 123.5 0.0 6.4e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DUF1799 PF08809.6 gi|218884689|ref|YP_002429071.1| - 0.053 13.3 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) PEPCK PF00821.13 gi|218884690|ref|YP_002429072.1| - 1.7e-183 610.9 0.0 2e-183 610.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Aminotran_3 PF00202.16 gi|218884691|ref|YP_002429073.1| - 6e-95 317.9 0.0 7.2e-95 317.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|218884691|ref|YP_002429073.1| - 0.042 12.7 0.0 0.094 11.6 0.0 1.7 1 1 0 1 1 1 0 Aminotransferase class I and II PyrI PF01948.13 gi|218884691|ref|YP_002429073.1| - 0.052 13.5 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, allosteric domain DUF1469 PF07332.6 gi|218884692|ref|YP_002429074.1| - 1.7 8.4 4.4 2.5 7.8 3.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Na_Ala_symp PF01235.12 gi|218884693|ref|YP_002429075.1| - 2.9e-100 335.7 23.0 3.6e-100 335.4 15.9 1.1 1 0 0 1 1 1 1 Sodium:alanine symporter family Radical_SAM PF04055.16 gi|218884694|ref|YP_002429076.1| - 6.1e-24 85.0 0.0 6.1e-24 85.0 0.0 2.3 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|218884694|ref|YP_002429076.1| - 8e-11 42.0 0.6 2.5e-10 40.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|218884694|ref|YP_002429076.1| - 1.9e-09 37.7 0.1 4.5e-09 36.5 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-CHC2 PF01807.15 gi|218884694|ref|YP_002429076.1| - 0.062 12.8 0.8 0.85 9.2 0.3 2.5 2 0 0 2 2 2 0 CHC2 zinc finger Molybdop_Fe4S4 PF04879.11 gi|218884694|ref|YP_002429076.1| - 6.4 6.6 8.2 22 4.9 0.5 3.6 4 0 0 4 4 4 0 Molybdopterin oxidoreductase Fe4S4 domain AAA_18 PF13238.1 gi|218884695|ref|YP_002429077.1| - 1.8e-21 76.7 0.0 2.3e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|218884695|ref|YP_002429077.1| - 1e-11 45.7 0.0 2.2e-11 44.6 0.0 1.4 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|218884695|ref|YP_002429077.1| - 0.00024 21.3 0.0 0.0017 18.5 0.0 2.1 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|218884695|ref|YP_002429077.1| - 0.0013 18.6 0.1 0.0022 17.9 0.1 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|218884695|ref|YP_002429077.1| - 0.0015 18.4 0.4 0.011 15.5 0.1 2.3 1 1 0 2 2 2 1 AAA domain CPT PF07931.7 gi|218884695|ref|YP_002429077.1| - 0.0041 16.7 0.0 1.4 8.4 0.0 2.2 2 0 0 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.9 gi|218884695|ref|YP_002429077.1| - 0.0041 16.8 0.0 0.0068 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|218884695|ref|YP_002429077.1| - 0.0064 16.2 0.6 0.012 15.3 0.4 1.5 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|218884695|ref|YP_002429077.1| - 0.0098 15.0 0.1 0.39 9.8 0.1 2.1 2 0 0 2 2 2 1 KaiC Viral_helicase1 PF01443.13 gi|218884695|ref|YP_002429077.1| - 0.012 15.1 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|218884695|ref|YP_002429077.1| - 0.021 13.9 0.6 0.034 13.2 0.1 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|218884695|ref|YP_002429077.1| - 0.023 14.8 0.1 0.045 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|218884695|ref|YP_002429077.1| - 0.024 13.6 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|218884695|ref|YP_002429077.1| - 0.039 13.9 0.3 0.07 13.1 0.2 1.3 1 0 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.5 gi|218884695|ref|YP_002429077.1| - 0.069 12.3 0.0 0.097 11.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AnfG_VnfG PF03139.10 gi|218884695|ref|YP_002429077.1| - 0.097 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Vanadium/alternative nitrogenase delta subunit SKI PF01202.17 gi|218884695|ref|YP_002429077.1| - 0.13 12.0 0.1 0.51 10.1 0.1 1.9 1 1 0 1 1 1 0 Shikimate kinase IPT PF01745.11 gi|218884695|ref|YP_002429077.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase MMR_HSR1 PF01926.18 gi|218884696|ref|YP_002429078.1| - 1.3e-14 54.1 0.0 3e-10 40.0 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|218884696|ref|YP_002429078.1| - 1.1e-07 31.3 0.0 0.00019 20.7 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|218884696|ref|YP_002429078.1| - 5.1e-07 29.6 0.2 0.067 13.0 0.0 3.1 2 1 1 3 3 3 2 Dynamin family DUF258 PF03193.11 gi|218884696|ref|YP_002429078.1| - 3.3e-06 26.3 0.0 5.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|218884696|ref|YP_002429078.1| - 0.00017 21.0 0.0 0.00087 18.7 0.0 1.8 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.1 gi|218884696|ref|YP_002429078.1| - 0.004 17.1 0.1 0.02 14.8 0.0 2.1 3 0 0 3 3 3 1 AAA ATPase domain Miro PF08477.8 gi|218884696|ref|YP_002429078.1| - 0.016 15.6 0.0 0.7 10.4 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_17 PF13207.1 gi|218884696|ref|YP_002429078.1| - 0.061 14.1 0.1 0.15 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|218884696|ref|YP_002429078.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ThiS-like PF14453.1 gi|218884697|ref|YP_002429079.1| - 0.016 15.0 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 ThiS-like ubiquitin ThiS PF02597.15 gi|218884697|ref|YP_002429079.1| - 0.022 15.1 0.1 0.026 14.9 0.0 1.1 1 0 0 1 1 1 0 ThiS family MarR_2 PF12802.2 gi|218884697|ref|YP_002429079.1| - 0.046 13.3 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family ThiF PF00899.16 gi|218884698|ref|YP_002429080.1| - 7.9e-39 132.5 0.0 1e-38 132.2 0.0 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|218884698|ref|YP_002429080.1| - 4.6e-09 35.7 0.0 7.6e-09 35.0 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|218884698|ref|YP_002429080.1| - 0.0039 17.2 0.1 0.0096 16.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|218884698|ref|YP_002429080.1| - 0.14 11.1 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase ThiS PF02597.15 gi|218884699|ref|YP_002429081.1| - 4.4e-07 30.2 0.0 5.8e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.16 gi|218884699|ref|YP_002429081.1| - 0.00094 18.7 1.1 0.33 10.5 0.1 2.5 2 1 1 3 3 3 2 TrkA-C domain FHA PF00498.21 gi|218884699|ref|YP_002429081.1| - 0.07 13.2 0.0 0.16 12.1 0.0 1.6 2 0 0 2 2 2 0 FHA domain DUF2148 PF09918.4 gi|218884701|ref|YP_002429083.1| - 1e-30 105.2 1.0 1e-30 105.2 0.7 1.9 2 0 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) DALR_1 PF05746.10 gi|218884701|ref|YP_002429083.1| - 0.00021 21.2 0.1 0.0003 20.7 0.0 1.3 1 0 0 1 1 1 1 DALR anticodon binding domain Nitroreductase PF00881.19 gi|218884701|ref|YP_002429083.1| - 0.13 12.1 0.1 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Nitroreductase family BPD_transp_2 PF02653.11 gi|218884703|ref|YP_002429085.1| - 7.8e-36 123.3 35.6 9.6e-36 123.1 24.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Claudin_2 PF13903.1 gi|218884703|ref|YP_002429085.1| - 2.7 7.6 13.7 1.7 8.2 4.0 2.7 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction BPD_transp_2 PF02653.11 gi|218884704|ref|YP_002429086.1| - 2e-38 131.9 35.6 2e-38 131.9 24.7 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|218884705|ref|YP_002429087.1| - 1e-52 178.0 0.0 9.9e-31 106.8 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|218884705|ref|YP_002429087.1| - 3.3e-10 40.4 0.6 3.1e-08 33.9 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|218884705|ref|YP_002429087.1| - 0.0015 17.6 0.5 0.49 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|218884705|ref|YP_002429087.1| - 0.0022 18.3 0.1 0.0057 17.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|218884705|ref|YP_002429087.1| - 0.012 15.1 0.7 0.31 10.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|218884705|ref|YP_002429087.1| - 0.016 15.4 1.8 1.3 9.2 1.1 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|218884705|ref|YP_002429087.1| - 0.022 14.1 2.2 0.22 10.9 0.1 2.9 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_29 PF13555.1 gi|218884705|ref|YP_002429087.1| - 0.024 14.1 0.0 0.073 12.6 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|218884705|ref|YP_002429087.1| - 0.043 13.8 0.3 0.12 12.3 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|218884705|ref|YP_002429087.1| - 0.1 11.0 0.3 0.79 8.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3647 PF12363.3 gi|218884705|ref|YP_002429087.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Phage protein DUF3584 PF12128.3 gi|218884705|ref|YP_002429087.1| - 0.16 9.2 0.1 0.26 8.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_22 PF13401.1 gi|218884705|ref|YP_002429087.1| - 0.28 11.3 3.4 2.1 8.4 1.2 2.7 2 1 0 2 2 1 0 AAA domain NACHT PF05729.7 gi|218884705|ref|YP_002429087.1| - 0.82 9.3 2.7 1.3 8.6 0.1 2.5 3 0 0 3 3 3 0 NACHT domain Bmp PF02608.9 gi|218884706|ref|YP_002429088.1| - 1.7e-79 266.7 0.1 2.2e-79 266.4 0.1 1.1 1 0 0 1 1 1 1 Basic membrane protein ADH_N PF08240.7 gi|218884707|ref|YP_002429089.1| - 2.6e-31 107.6 1.4 5.1e-31 106.6 1.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|218884707|ref|YP_002429089.1| - 2.3e-17 62.7 0.0 4e-17 61.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|218884707|ref|YP_002429089.1| - 0.00035 21.4 0.1 0.00094 20.0 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.17 gi|218884707|ref|YP_002429089.1| - 0.0024 18.3 0.0 0.0059 17.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|218884707|ref|YP_002429089.1| - 0.15 11.2 0.0 0.27 10.3 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LacAB_rpiB PF02502.13 gi|218884708|ref|YP_002429090.1| - 1.7e-38 131.3 0.0 2.1e-38 131.1 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase B12-binding PF02310.14 gi|218884708|ref|YP_002429090.1| - 0.012 15.4 0.0 0.036 13.9 0.0 1.8 1 1 0 1 1 1 0 B12 binding domain Glyco_trans_1_4 PF13692.1 gi|218884708|ref|YP_002429090.1| - 0.14 12.2 0.3 2.2 8.4 0.2 2.1 1 1 0 1 1 1 0 Glycosyl transferases group 1 SIS PF01380.17 gi|218884709|ref|YP_002429091.1| - 1.1e-44 151.2 0.1 1.8e-28 98.7 0.2 3.1 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|218884709|ref|YP_002429091.1| - 2.5e-23 82.4 0.0 6.3e-23 81.1 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|218884709|ref|YP_002429091.1| - 8.6e-21 74.0 0.5 1e-14 54.0 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|218884709|ref|YP_002429091.1| - 1.3e-16 60.4 0.0 3.5e-16 59.0 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|218884709|ref|YP_002429091.1| - 1.9e-06 27.6 1.3 0.0004 20.1 0.1 3.0 2 1 0 3 3 3 1 SIS domain GATase_4 PF13230.1 gi|218884709|ref|YP_002429091.1| - 0.0011 17.7 0.3 0.0019 16.9 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.4 gi|218884709|ref|YP_002429091.1| - 0.0094 15.6 0.0 0.16 11.6 0.0 2.6 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region DUF4631 PF15450.1 gi|218884709|ref|YP_002429091.1| - 0.17 10.1 0.0 0.25 9.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) AA_kinase PF00696.23 gi|218884710|ref|YP_002429092.1| - 1e-20 74.3 0.0 1.3e-20 74.0 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Arch_ATPase PF01637.13 gi|218884711|ref|YP_002429093.1| - 9.1e-41 140.0 1.8 3.1e-40 138.3 1.5 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|218884711|ref|YP_002429093.1| - 6.1e-08 32.6 0.1 0.0013 18.6 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|218884711|ref|YP_002429093.1| - 1.5e-05 25.0 0.0 5.9e-05 23.1 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|218884711|ref|YP_002429093.1| - 7e-05 22.9 0.0 0.00032 20.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|218884711|ref|YP_002429093.1| - 0.0024 16.5 0.0 0.054 12.1 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|218884711|ref|YP_002429093.1| - 0.013 15.7 0.0 0.035 14.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_assoc PF14363.1 gi|218884711|ref|YP_002429093.1| - 0.14 12.1 0.1 1.1 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain associated at C-terminal with AAA adh_short_C2 PF13561.1 gi|218884712|ref|YP_002429094.1| - 1.6e-21 77.2 0.0 1.9e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|218884712|ref|YP_002429094.1| - 9.7e-15 54.8 0.0 2.2e-14 53.7 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|218884712|ref|YP_002429094.1| - 5.4e-09 35.9 0.0 1.3e-08 34.7 0.0 1.5 2 0 0 2 2 2 1 KR domain DUF1776 PF08643.5 gi|218884712|ref|YP_002429094.1| - 0.09 11.8 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Shikimate_DH PF01488.15 gi|218884712|ref|YP_002429094.1| - 0.1 12.6 0.0 0.43 10.6 0.0 2.0 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase SpoU_methylase PF00588.14 gi|218884714|ref|YP_002429096.1| - 1.9e-31 108.8 0.0 2.7e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|218884714|ref|YP_002429096.1| - 1.3e-07 31.2 0.0 4.8e-06 26.1 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Methyltrn_RNA_3 PF02598.12 gi|218884714|ref|YP_002429096.1| - 0.072 12.4 0.0 0.51 9.6 0.0 1.9 1 1 1 2 2 2 0 Putative RNA methyltransferase MTS PF05175.9 gi|218884715|ref|YP_002429097.1| - 3.4e-18 65.5 0.0 4.1e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|218884715|ref|YP_002429097.1| - 4.3e-15 55.7 0.0 5.5e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|218884715|ref|YP_002429097.1| - 5.6e-11 42.0 0.2 8.8e-11 41.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|218884715|ref|YP_002429097.1| - 3.4e-09 36.3 0.0 4.7e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|218884715|ref|YP_002429097.1| - 2.4e-08 33.7 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|218884715|ref|YP_002429097.1| - 2.5e-08 34.4 0.0 3.5e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|218884715|ref|YP_002429097.1| - 1.3e-05 25.4 0.0 2.1e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|218884715|ref|YP_002429097.1| - 4.8e-05 23.7 0.1 0.00066 20.1 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|218884715|ref|YP_002429097.1| - 0.00018 21.8 0.4 0.00051 20.4 0.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|218884715|ref|YP_002429097.1| - 0.002 17.8 0.0 0.025 14.2 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|218884715|ref|YP_002429097.1| - 0.0025 16.9 0.0 0.0073 15.4 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|218884715|ref|YP_002429097.1| - 0.0027 16.8 0.0 0.0049 16.0 0.0 1.4 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_16 PF10294.4 gi|218884715|ref|YP_002429097.1| - 0.0063 15.9 0.2 0.0096 15.3 0.1 1.3 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|218884715|ref|YP_002429097.1| - 0.013 15.0 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.1 gi|218884715|ref|YP_002429097.1| - 0.031 15.1 0.0 0.12 13.2 0.0 1.9 2 1 0 2 2 2 0 Methyltransferase domain TRM PF02005.11 gi|218884715|ref|YP_002429097.1| - 0.13 11.1 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase RrnaAD PF00398.15 gi|218884716|ref|YP_002429098.1| - 1.1e-35 122.9 0.0 1.2e-35 122.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|218884716|ref|YP_002429098.1| - 0.00032 21.2 0.0 0.00061 20.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|218884716|ref|YP_002429098.1| - 0.00064 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|218884716|ref|YP_002429098.1| - 0.00068 19.6 0.1 0.0018 18.3 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|218884716|ref|YP_002429098.1| - 0.00096 19.4 0.0 0.0018 18.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|218884716|ref|YP_002429098.1| - 0.0018 17.3 0.0 0.0034 16.4 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_31 PF13847.1 gi|218884716|ref|YP_002429098.1| - 0.0037 16.8 0.0 0.0063 16.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|218884716|ref|YP_002429098.1| - 0.006 17.0 0.0 0.014 15.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|218884716|ref|YP_002429098.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.6 gi|218884716|ref|YP_002429098.1| - 0.043 12.4 0.0 0.071 11.7 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.14 gi|218884716|ref|YP_002429098.1| - 0.052 13.0 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF655 PF04919.7 gi|218884717|ref|YP_002429099.1| - 7.5e-62 208.2 1.8 8.9e-62 208.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|218884717|ref|YP_002429099.1| - 0.00015 21.7 0.1 0.00035 20.5 0.1 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|218884717|ref|YP_002429099.1| - 0.00055 19.8 0.8 0.0012 18.7 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|218884718|ref|YP_002429100.1| - 2.7e-17 62.8 1.2 3.5e-17 62.4 0.9 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 VIT1 PF01988.14 gi|218884718|ref|YP_002429100.1| - 0.12 11.8 0.1 0.24 10.8 0.0 1.5 1 1 1 2 2 2 0 VIT family Biotin_lipoyl PF00364.17 gi|218884718|ref|YP_002429100.1| - 0.14 11.8 0.0 2.4 7.8 0.0 2.3 2 0 0 2 2 2 0 Biotin-requiring enzyme Ribosomal_L21e PF01157.13 gi|218884719|ref|YP_002429101.1| - 2.2e-29 101.1 1.2 2.5e-29 100.9 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|218884720|ref|YP_002429102.1| - 6e-07 29.4 0.3 6e-07 29.4 0.2 2.4 2 1 1 3 3 3 1 THUMP domain SRP54 PF00448.17 gi|218884721|ref|YP_002429103.1| - 1.1e-76 256.6 0.1 1.5e-76 256.2 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|218884721|ref|YP_002429103.1| - 5.3e-29 100.5 0.1 1.6e-28 98.9 0.1 1.8 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|218884721|ref|YP_002429103.1| - 2.6e-12 46.6 1.8 1.1e-11 44.6 0.1 2.7 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|218884721|ref|YP_002429103.1| - 3.1e-07 29.9 0.1 9.6e-07 28.4 0.1 1.8 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|218884721|ref|YP_002429103.1| - 2.4e-06 27.4 0.0 5.4e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|218884721|ref|YP_002429103.1| - 1.9e-05 24.8 0.0 0.0001 22.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|218884721|ref|YP_002429103.1| - 2e-05 24.0 2.0 0.00047 19.6 1.4 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|218884721|ref|YP_002429103.1| - 0.00011 21.3 0.0 0.00024 20.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.18 gi|218884721|ref|YP_002429103.1| - 0.00018 21.4 0.1 0.00042 20.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase MobB PF03205.9 gi|218884721|ref|YP_002429103.1| - 0.00023 20.9 0.1 0.00053 19.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|218884721|ref|YP_002429103.1| - 0.0017 17.7 0.1 0.028 13.8 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|218884721|ref|YP_002429103.1| - 0.0023 18.7 0.3 0.0023 18.7 0.2 2.7 3 2 0 3 3 2 1 AAA domain APS_kinase PF01583.15 gi|218884721|ref|YP_002429103.1| - 0.0064 16.1 0.0 0.02 14.5 0.0 1.9 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.1 gi|218884721|ref|YP_002429103.1| - 0.009 15.6 0.2 0.029 13.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|218884721|ref|YP_002429103.1| - 0.0099 15.3 0.9 0.023 14.1 0.1 2.0 2 1 0 2 2 2 1 AAA-like domain GTP_EFTU PF00009.22 gi|218884721|ref|YP_002429103.1| - 0.011 15.2 0.5 0.036 13.4 0.4 1.8 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|218884721|ref|YP_002429103.1| - 0.012 14.4 0.0 0.027 13.2 0.0 1.6 1 1 0 1 1 1 0 ArgK protein 6PF2K PF01591.13 gi|218884721|ref|YP_002429103.1| - 0.018 14.1 0.0 0.036 13.1 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_19 PF13245.1 gi|218884721|ref|YP_002429103.1| - 0.018 14.7 0.1 0.056 13.2 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Clp_N PF02861.15 gi|218884721|ref|YP_002429103.1| - 0.054 13.4 0.3 12 5.8 0.0 2.8 2 0 0 2 2 2 0 Clp amino terminal domain PduV-EutP PF10662.4 gi|218884721|ref|YP_002429103.1| - 0.068 12.6 0.3 7.4 6.0 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_31 PF13614.1 gi|218884721|ref|YP_002429103.1| - 0.075 12.9 0.1 1.6 8.6 0.0 2.5 1 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|218884721|ref|YP_002429103.1| - 0.081 12.3 0.1 0.45 9.8 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase ATP_bind_1 PF03029.12 gi|218884721|ref|YP_002429103.1| - 0.083 12.4 0.1 0.36 10.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|218884721|ref|YP_002429103.1| - 0.083 12.8 0.0 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain MipZ PF09140.6 gi|218884721|ref|YP_002429103.1| - 0.084 11.9 0.1 2.2 7.3 0.1 2.3 1 1 0 1 1 1 0 ATPase MipZ ABC_tran PF00005.22 gi|218884721|ref|YP_002429103.1| - 0.089 13.0 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.1 gi|218884721|ref|YP_002429103.1| - 0.1 12.9 4.0 0.1 12.9 0.8 2.6 2 1 0 2 2 1 0 AAA domain AAA PF00004.24 gi|218884721|ref|YP_002429103.1| - 0.1 12.7 0.7 0.82 9.8 0.5 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|218884721|ref|YP_002429103.1| - 0.11 12.2 0.1 0.5 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mur_ligase_M PF08245.7 gi|218884721|ref|YP_002429103.1| - 0.11 12.5 0.2 0.51 10.3 0.1 1.9 1 1 0 1 1 1 0 Mur ligase middle domain Ribosomal_L16 PF00252.13 gi|218884722|ref|YP_002429104.1| - 7.9e-33 113.0 0.1 9.3e-33 112.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Urease_beta PF00699.15 gi|218884722|ref|YP_002429104.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Urease beta subunit Diphthamide_syn PF01866.12 gi|218884723|ref|YP_002429105.1| - 7.7e-56 189.5 0.0 9.8e-56 189.2 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein RHH_2 PF03693.9 gi|218884723|ref|YP_002429105.1| - 0.14 12.3 0.1 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) Methyltransf_26 PF13659.1 gi|218884724|ref|YP_002429106.1| - 1.6e-06 28.1 0.0 2.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|218884724|ref|YP_002429106.1| - 8.8e-05 21.9 0.0 0.00011 21.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|218884724|ref|YP_002429106.1| - 0.00018 20.7 1.2 0.0003 20.0 0.5 1.5 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|218884724|ref|YP_002429106.1| - 0.0002 20.9 0.0 0.00026 20.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|218884724|ref|YP_002429106.1| - 0.0039 17.5 0.0 0.0069 16.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|218884724|ref|YP_002429106.1| - 0.0071 15.9 0.2 0.016 14.7 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|218884724|ref|YP_002429106.1| - 0.065 12.2 0.0 0.1 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF43 Methyltransf_18 PF12847.2 gi|218884724|ref|YP_002429106.1| - 0.079 13.5 1.6 0.73 10.4 1.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain RNA_POL_M_15KD PF02150.11 gi|218884725|ref|YP_002429107.1| - 0.00024 20.7 2.3 0.00039 20.0 1.6 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit RRN7 PF11781.3 gi|218884725|ref|YP_002429107.1| - 0.00048 19.5 0.2 0.001 18.5 0.2 1.5 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 ECR1_N PF14382.1 gi|218884725|ref|YP_002429107.1| - 0.00052 19.2 0.0 0.0014 17.9 0.0 1.8 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|218884725|ref|YP_002429107.1| - 0.00061 19.8 0.1 0.0022 18.0 0.0 1.9 1 1 0 1 1 1 1 S1 RNA binding domain Prok-RING_1 PF14446.1 gi|218884725|ref|YP_002429107.1| - 0.0013 18.4 0.8 0.002 17.8 0.6 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 EXOSC1 PF10447.4 gi|218884725|ref|YP_002429107.1| - 0.0015 18.4 0.2 0.26 11.2 0.0 2.8 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 Baculo_ME53 PF06061.6 gi|218884725|ref|YP_002429107.1| - 0.0096 14.9 0.1 0.0096 14.9 0.0 1.2 1 0 0 1 1 1 1 Baculoviridae ME53 ATPgrasp_TupA PF14305.1 gi|218884725|ref|YP_002429107.1| - 0.015 14.5 0.1 0.02 14.1 0.1 1.2 1 0 0 1 1 1 0 TupA-like ATPgrasp OrfB_Zn_ribbon PF07282.6 gi|218884725|ref|YP_002429107.1| - 0.027 14.1 1.1 0.05 13.2 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2318 PF10080.4 gi|218884725|ref|YP_002429107.1| - 0.03 14.0 0.2 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.5 gi|218884725|ref|YP_002429107.1| - 0.037 13.4 3.2 0.067 12.6 2.2 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|218884725|ref|YP_002429107.1| - 0.083 12.7 0.3 0.14 12.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|218884725|ref|YP_002429107.1| - 0.12 12.1 0.5 0.2 11.4 0.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|218884725|ref|YP_002429107.1| - 0.21 11.2 1.0 0.32 10.6 0.7 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|218884725|ref|YP_002429107.1| - 0.68 9.6 4.6 21 4.9 3.2 2.3 1 1 0 1 1 1 0 Nudix N-terminal DUF2067 PF09840.4 gi|218884726|ref|YP_002429108.1| - 4.9e-24 84.8 0.2 6.2e-24 84.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.1 gi|218884727|ref|YP_002429109.1| - 3.5e-23 80.8 0.0 4.3e-23 80.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|218884727|ref|YP_002429109.1| - 8.1e-05 21.6 0.0 0.0001 21.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.13 gi|218884729|ref|YP_002429111.1| - 3.1e-20 71.5 4.5 3.8e-20 71.2 3.1 1.1 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|218884729|ref|YP_002429111.1| - 9.7e-05 21.8 1.7 0.12 12.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|218884729|ref|YP_002429111.1| - 0.0001 21.9 1.8 0.12 12.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|218884729|ref|YP_002429111.1| - 0.00035 20.3 1.5 0.00057 19.6 1.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|218884729|ref|YP_002429111.1| - 0.0017 17.9 2.0 0.014 14.9 1.5 1.9 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|218884729|ref|YP_002429111.1| - 0.0022 17.1 2.5 0.08 12.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|218884729|ref|YP_002429111.1| - 0.011 15.1 3.4 0.87 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|218884729|ref|YP_002429111.1| - 0.012 15.5 0.4 0.02 14.7 0.3 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|218884729|ref|YP_002429111.1| - 0.015 14.7 1.2 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|218884729|ref|YP_002429111.1| - 0.018 14.3 0.3 4.9 6.5 0.0 2.4 3 0 0 3 3 3 0 TFIIB zinc-binding DUF2082 PF09855.4 gi|218884729|ref|YP_002429111.1| - 0.035 13.9 2.2 2.1 8.2 0.0 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF2296 PF10058.4 gi|218884729|ref|YP_002429111.1| - 0.044 13.5 0.8 0.079 12.7 0.5 1.4 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-Mss51 PF13824.1 gi|218884729|ref|YP_002429111.1| - 0.045 13.6 2.3 0.51 10.2 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-DNA_Pol PF08996.5 gi|218884729|ref|YP_002429111.1| - 0.055 12.8 0.0 0.063 12.6 0.0 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Baculo_LEF5_C PF11792.3 gi|218884729|ref|YP_002429111.1| - 0.06 12.7 0.3 0.12 11.7 0.2 1.6 1 1 0 1 1 1 0 Baculoviridae late expression factor 5 C-terminal domain DZR PF12773.2 gi|218884729|ref|YP_002429111.1| - 0.061 13.1 1.5 0.29 10.9 1.2 1.8 1 1 1 2 2 2 0 Double zinc ribbon FdhE PF04216.7 gi|218884729|ref|YP_002429111.1| - 0.11 12.1 0.8 0.13 11.9 0.6 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation PolC_DP2 PF03833.8 gi|218884729|ref|YP_002429111.1| - 0.12 10.0 0.2 0.13 9.9 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-H2C2_2 PF13465.1 gi|218884729|ref|YP_002429111.1| - 0.12 12.7 6.7 1 9.7 0.4 2.4 2 1 0 2 2 2 0 Zinc-finger double domain zf-tcix PF14952.1 gi|218884729|ref|YP_002429111.1| - 0.16 11.3 2.2 8.1 5.8 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|218884729|ref|YP_002429111.1| - 0.17 11.8 6.3 2 8.4 0.2 2.4 1 1 0 2 2 2 0 Zinc ribbon domain Terminase_GpA PF05876.7 gi|218884729|ref|YP_002429111.1| - 0.24 9.7 2.8 0.28 9.5 1.9 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) UPF0547 PF10571.4 gi|218884729|ref|YP_002429111.1| - 0.28 10.9 3.6 6 6.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rdx PF10262.4 gi|218884729|ref|YP_002429111.1| - 0.34 10.9 2.3 1.8 8.6 0.1 2.1 2 0 0 2 2 2 0 Rdx family Sgf11 PF08209.6 gi|218884729|ref|YP_002429111.1| - 0.34 10.2 1.9 6.7 6.1 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF1610 PF07754.6 gi|218884729|ref|YP_002429111.1| - 2 8.6 9.0 1.1 9.4 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2 PF00096.21 gi|218884729|ref|YP_002429111.1| - 8.7 6.9 6.3 26 5.4 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type PCNA_N PF00705.13 gi|218884730|ref|YP_002429112.1| - 3e-16 59.0 0.0 1.2e-15 57.1 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|218884730|ref|YP_002429112.1| - 1.2e-06 28.4 0.0 2.5e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|218884730|ref|YP_002429112.1| - 7.3e-05 21.6 0.2 0.00034 19.4 0.1 1.9 1 1 1 2 2 2 1 Repair protein Rad1/Rec1/Rad17 DNA_primase_S PF01896.14 gi|218884731|ref|YP_002429113.1| - 1.2e-14 54.3 1.2 1e-13 51.3 0.8 2.2 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF515 PF04415.7 gi|218884733|ref|YP_002429115.1| - 0.0029 15.9 1.0 0.0029 15.9 0.7 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF515) SLAC1 PF03595.12 gi|218884733|ref|YP_002429115.1| - 0.079 11.5 8.1 0.11 11.0 5.6 1.2 1 0 0 1 1 1 0 Voltage-dependent anion channel EI24 PF07264.6 gi|218884733|ref|YP_002429115.1| - 0.51 9.7 9.3 1.3 8.4 3.7 2.0 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) DUF3290 PF11694.3 gi|218884733|ref|YP_002429115.1| - 0.51 10.0 11.0 0.13 12.0 5.0 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3290) DUF485 PF04341.7 gi|218884733|ref|YP_002429115.1| - 0.98 9.1 8.7 0.31 10.7 3.4 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF485 Baculo_11_kDa PF06143.6 gi|218884733|ref|YP_002429115.1| - 1 8.7 4.2 0.83 9.0 0.4 2.2 2 1 0 2 2 2 0 Baculovirus 11 kDa family Nop10p PF04135.7 gi|218884734|ref|YP_002429116.1| - 1.6e-24 85.3 0.4 1.8e-24 85.1 0.3 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-CCHC_4 PF14392.1 gi|218884734|ref|YP_002429116.1| - 0.0025 17.4 0.2 0.004 16.8 0.1 1.4 1 0 0 1 1 1 1 Zinc knuckle DUF35_N PF12172.3 gi|218884734|ref|YP_002429116.1| - 0.0026 17.6 3.3 0.0026 17.6 2.3 1.7 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.6 gi|218884734|ref|YP_002429116.1| - 0.0073 16.1 1.3 0.0095 15.7 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.5 gi|218884734|ref|YP_002429116.1| - 0.015 14.7 1.6 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|218884734|ref|YP_002429116.1| - 0.027 14.2 0.2 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|218884734|ref|YP_002429116.1| - 0.033 13.3 5.2 0.18 11.0 3.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|218884734|ref|YP_002429116.1| - 0.047 13.8 0.5 0.069 13.3 0.3 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family Zn_ribbon_recom PF13408.1 gi|218884734|ref|YP_002429116.1| - 0.052 13.8 0.3 2.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain RecR PF02132.10 gi|218884734|ref|YP_002429116.1| - 0.067 12.6 0.8 0.097 12.1 0.3 1.5 2 0 0 2 2 2 0 RecR protein zinc_ribbon_2 PF13240.1 gi|218884734|ref|YP_002429116.1| - 0.069 12.6 5.8 1.2 8.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|218884734|ref|YP_002429116.1| - 0.15 12.1 4.7 0.55 10.3 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|218884734|ref|YP_002429116.1| - 0.35 10.4 4.0 1.1 8.8 0.1 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|218884734|ref|YP_002429116.1| - 0.49 9.7 4.1 3.8 6.8 0.3 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|218884734|ref|YP_002429116.1| - 0.72 9.8 4.5 0.99 9.4 0.2 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-tcix PF14952.1 gi|218884734|ref|YP_002429116.1| - 2.2 7.6 9.2 33 3.9 6.4 2.1 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding EIF_2_alpha PF07541.7 gi|218884735|ref|YP_002429117.1| - 7.4e-25 86.8 1.0 2e-24 85.5 0.0 2.1 3 0 0 3 3 3 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|218884735|ref|YP_002429117.1| - 1.3e-12 47.5 1.0 2.5e-12 46.7 0.1 1.9 2 0 0 2 2 2 1 S1 RNA binding domain DUF1464 PF07318.7 gi|218884735|ref|YP_002429117.1| - 0.039 12.7 0.8 0.41 9.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1464) Cdc6_C PF09079.6 gi|218884738|ref|YP_002429120.1| - 6.6e-20 70.6 0.2 1.7e-19 69.3 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|218884738|ref|YP_002429120.1| - 1.6e-13 50.9 0.0 3.4e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|218884738|ref|YP_002429120.1| - 6.3e-10 39.3 0.0 3.4e-09 36.9 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|218884738|ref|YP_002429120.1| - 3.4e-08 33.4 1.7 1.1e-07 31.8 0.2 2.3 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|218884738|ref|YP_002429120.1| - 1.7e-05 24.5 0.0 3.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_17 PF13207.1 gi|218884738|ref|YP_002429120.1| - 3.8e-05 24.5 0.9 0.00038 21.2 0.1 2.3 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|218884738|ref|YP_002429120.1| - 9.2e-05 21.4 0.0 0.00018 20.4 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_24 PF13479.1 gi|218884738|ref|YP_002429120.1| - 0.0012 18.5 0.0 0.0022 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|218884738|ref|YP_002429120.1| - 0.0014 18.8 0.0 0.0033 17.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|218884738|ref|YP_002429120.1| - 0.0014 18.9 0.0 0.0039 17.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|218884738|ref|YP_002429120.1| - 0.0034 17.6 0.0 0.0097 16.2 0.0 1.7 1 0 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|218884738|ref|YP_002429120.1| - 0.0044 16.7 0.1 0.02 14.5 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|218884738|ref|YP_002429120.1| - 0.0072 15.8 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family KaiC PF06745.8 gi|218884738|ref|YP_002429120.1| - 0.013 14.6 0.3 0.067 12.2 0.0 2.1 2 0 0 2 2 2 0 KaiC PduV-EutP PF10662.4 gi|218884738|ref|YP_002429120.1| - 0.014 14.8 0.1 0.044 13.2 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|218884738|ref|YP_002429120.1| - 0.016 15.1 0.1 0.044 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|218884738|ref|YP_002429120.1| - 0.016 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|218884738|ref|YP_002429120.1| - 0.02 14.5 0.1 0.67 9.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_25 PF13481.1 gi|218884738|ref|YP_002429120.1| - 0.023 14.1 0.0 0.58 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|218884738|ref|YP_002429120.1| - 0.026 14.3 0.0 0.55 10.0 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|218884738|ref|YP_002429120.1| - 0.054 13.2 0.1 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|218884738|ref|YP_002429120.1| - 0.058 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ocnus PF05005.10 gi|218884738|ref|YP_002429120.1| - 0.059 13.2 0.0 0.2 11.5 0.0 1.9 1 1 0 1 1 1 0 Janus/Ocnus family (Ocnus) Miro PF08477.8 gi|218884738|ref|YP_002429120.1| - 0.061 13.8 0.2 0.2 12.1 0.0 2.2 2 1 0 2 2 1 0 Miro-like protein AAA_30 PF13604.1 gi|218884738|ref|YP_002429120.1| - 0.08 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|218884738|ref|YP_002429120.1| - 0.093 11.3 0.3 0.2 10.2 0.1 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|218884738|ref|YP_002429120.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ASCH PF04266.9 gi|218884741|ref|YP_002429123.1| - 0.00011 22.5 0.0 0.00013 22.3 0.0 1.1 1 0 0 1 1 1 1 ASCH domain HTH_1 PF00126.22 gi|218884742|ref|YP_002429124.1| - 0.035 13.8 0.0 0.07 12.8 0.0 1.5 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.22 gi|218884744|ref|YP_002429126.1| - 3.1e-31 108.5 0.0 4.2e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218884744|ref|YP_002429126.1| - 1.1e-14 55.0 1.4 1.3e-06 28.6 0.6 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|218884744|ref|YP_002429126.1| - 6.1e-06 25.5 0.0 0.058 12.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|218884744|ref|YP_002429126.1| - 2.9e-05 24.5 0.0 5.5e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|218884744|ref|YP_002429126.1| - 4.2e-05 22.9 0.0 9.4e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|218884744|ref|YP_002429126.1| - 0.00011 22.1 0.2 0.0087 15.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|218884744|ref|YP_002429126.1| - 0.00019 21.5 0.7 0.038 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|218884744|ref|YP_002429126.1| - 0.00035 21.3 0.1 0.00066 20.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|218884744|ref|YP_002429126.1| - 0.00045 20.2 1.1 0.0015 18.5 0.8 1.8 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|218884744|ref|YP_002429126.1| - 0.00059 18.5 0.1 0.14 10.7 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|218884744|ref|YP_002429126.1| - 0.00072 18.7 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|218884744|ref|YP_002429126.1| - 0.0013 18.0 0.4 0.01 15.0 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|218884744|ref|YP_002429126.1| - 0.0015 18.2 0.2 0.0035 17.0 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|218884744|ref|YP_002429126.1| - 0.0034 17.0 0.0 0.006 16.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|218884744|ref|YP_002429126.1| - 0.0051 16.7 0.2 0.0068 16.2 0.2 1.6 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|218884744|ref|YP_002429126.1| - 0.0081 15.8 0.0 0.0092 15.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_30 PF13604.1 gi|218884744|ref|YP_002429126.1| - 0.0091 15.5 0.0 0.024 14.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|218884744|ref|YP_002429126.1| - 0.016 14.5 0.0 0.045 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|218884744|ref|YP_002429126.1| - 0.019 14.7 0.5 0.04 13.6 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain NB-ARC PF00931.17 gi|218884744|ref|YP_002429126.1| - 0.024 13.5 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|218884744|ref|YP_002429126.1| - 0.025 14.7 0.5 0.15 12.2 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|218884744|ref|YP_002429126.1| - 0.03 13.7 0.1 0.046 13.1 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|218884744|ref|YP_002429126.1| - 0.038 13.5 0.0 0.073 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DEAD PF00270.24 gi|218884744|ref|YP_002429126.1| - 0.038 13.4 0.0 0.055 12.9 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase cobW PF02492.14 gi|218884744|ref|YP_002429126.1| - 0.044 13.2 0.8 0.094 12.1 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|218884744|ref|YP_002429126.1| - 0.046 13.3 0.1 0.078 12.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|218884744|ref|YP_002429126.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DLIC PF05783.6 gi|218884744|ref|YP_002429126.1| - 0.07 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) T2SE PF00437.15 gi|218884744|ref|YP_002429126.1| - 0.075 11.9 0.2 0.16 10.8 0.1 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|218884744|ref|YP_002429126.1| - 0.08 12.4 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|218884744|ref|YP_002429126.1| - 0.091 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|218884744|ref|YP_002429126.1| - 0.093 12.4 0.1 1.2 8.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA12 PF10443.4 gi|218884744|ref|YP_002429126.1| - 0.095 11.1 0.0 0.12 10.7 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein SRP54 PF00448.17 gi|218884744|ref|YP_002429126.1| - 0.12 11.7 0.2 0.21 11.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|218884744|ref|YP_002429126.1| - 0.14 11.2 0.0 0.27 10.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|218884744|ref|YP_002429126.1| - 0.2 11.5 0.3 0.52 10.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain FecCD PF01032.13 gi|218884745|ref|YP_002429127.1| - 2e-76 256.8 37.0 2.4e-76 256.5 25.6 1.0 1 0 0 1 1 1 1 FecCD transport family Benyvirus_P25 PF05744.6 gi|218884745|ref|YP_002429127.1| - 0.055 12.7 0.0 0.081 12.2 0.0 1.2 1 0 0 1 1 1 0 Benyvirus P25/P26 protein Peripla_BP_2 PF01497.13 gi|218884746|ref|YP_002429128.1| - 3.7e-22 78.6 0.0 5e-22 78.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein InaF-motif PF15018.1 gi|218884746|ref|YP_002429128.1| - 0.055 12.9 0.8 0.13 11.6 0.6 1.6 1 0 0 1 1 1 0 TRP-interacting helix AJAP1_PANP_C PF15298.1 gi|218884746|ref|YP_002429128.1| - 0.22 11.3 0.4 0.39 10.5 0.3 1.3 1 0 0 1 1 1 0 AJAP1/PANP C-terminus FmdE PF02663.9 gi|218884747|ref|YP_002429129.1| - 1.3e-37 128.6 0.0 1.8e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|218884747|ref|YP_002429129.1| - 2.5e-08 33.5 1.2 4.5e-08 32.6 0.8 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Hexapep PF00132.19 gi|218884747|ref|YP_002429129.1| - 0.011 15.1 0.2 0.026 14.0 0.2 1.6 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|218884747|ref|YP_002429129.1| - 0.097 12.2 0.7 0.25 10.9 0.5 1.7 1 0 0 1 1 1 0 Hexapeptide repeat of succinyl-transferase LIM PF00412.17 gi|218884747|ref|YP_002429129.1| - 0.12 12.4 0.1 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 LIM domain Peptidase_S24 PF00717.18 gi|218884748|ref|YP_002429130.1| - 5e-11 42.0 0.5 9.2e-11 41.2 0.3 1.5 1 1 0 1 1 1 1 Peptidase S24-like Zn-ribbon_8 PF09723.5 gi|218884749|ref|YP_002429131.1| - 0.0072 16.2 1.3 0.13 12.2 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain TFIIS_C PF01096.13 gi|218884749|ref|YP_002429131.1| - 0.0074 15.8 4.4 0.81 9.3 0.5 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|218884749|ref|YP_002429131.1| - 0.01 15.4 0.3 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|218884749|ref|YP_002429131.1| - 0.024 14.3 4.5 0.38 10.4 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|218884749|ref|YP_002429131.1| - 0.024 14.9 0.1 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Elf1 PF05129.8 gi|218884749|ref|YP_002429131.1| - 0.047 13.3 0.1 0.089 12.4 0.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like YokU PF14122.1 gi|218884749|ref|YP_002429131.1| - 0.054 13.2 0.3 0.086 12.5 0.2 1.3 1 0 0 1 1 1 0 YokU-like protein DNA_RNApol_7kD PF03604.8 gi|218884749|ref|YP_002429131.1| - 0.068 12.6 1.8 0.4 10.1 0.2 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|218884749|ref|YP_002429131.1| - 0.087 12.4 7.3 0.27 10.8 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|218884749|ref|YP_002429131.1| - 0.087 12.0 2.8 0.52 9.5 2.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF2082 PF09855.4 gi|218884749|ref|YP_002429131.1| - 0.09 12.6 3.6 0.61 9.9 2.0 2.3 2 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TF_Zn_Ribbon PF08271.7 gi|218884749|ref|YP_002429131.1| - 0.17 11.2 1.1 1.1 8.6 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ZPR1 PF03367.8 gi|218884749|ref|YP_002429131.1| - 0.22 10.6 1.0 0.7 9.0 0.7 1.8 1 1 0 1 1 1 0 ZPR1 zinc-finger domain DUF4379 PF14311.1 gi|218884749|ref|YP_002429131.1| - 0.25 11.1 1.8 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Zn_Tnp_IS1595 PF12760.2 gi|218884749|ref|YP_002429131.1| - 0.31 10.8 2.6 1 9.2 1.7 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|218884749|ref|YP_002429131.1| - 0.34 10.6 4.1 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.4 gi|218884749|ref|YP_002429131.1| - 0.44 9.6 2.3 11 5.1 0.0 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1 PF03811.8 gi|218884749|ref|YP_002429131.1| - 0.63 9.5 3.0 0.68 9.4 0.2 2.0 2 0 0 2 2 2 0 InsA N-terminal domain Ribosomal_L37ae PF01780.14 gi|218884749|ref|YP_002429131.1| - 1.2 9.0 3.9 30 4.5 2.7 2.1 1 1 0 1 1 1 0 Ribosomal L37ae protein family zf-IS66 PF13005.2 gi|218884749|ref|YP_002429131.1| - 1.4 8.9 6.1 0.51 10.3 1.8 2.1 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Enolase_C PF00113.17 gi|218884751|ref|YP_002429133.1| - 9.1e-115 382.6 0.0 1.2e-114 382.2 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|218884751|ref|YP_002429133.1| - 1.6e-54 183.3 0.3 3.2e-54 182.4 0.2 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|218884751|ref|YP_002429133.1| - 0.00035 19.5 0.0 0.0006 18.8 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|218884751|ref|YP_002429133.1| - 0.0019 18.6 0.0 0.0046 17.4 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MpPF26 PF07666.6 gi|218884752|ref|YP_002429134.1| - 0.061 13.2 10.2 0.07 13.0 7.1 1.2 1 0 0 1 1 1 0 M penetrans paralogue family 26 DUF2985 PF11204.3 gi|218884752|ref|YP_002429134.1| - 0.23 11.2 0.1 0.23 11.2 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2985) zf-DHHC PF01529.15 gi|218884752|ref|YP_002429134.1| - 0.44 9.9 5.0 0.46 9.8 3.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2244 PF10003.4 gi|218884752|ref|YP_002429134.1| - 0.96 8.8 8.4 0.19 11.1 2.8 1.8 1 1 1 2 2 2 0 Integral membrane protein (DUF2244) Bac_export_3 PF01313.14 gi|218884752|ref|YP_002429134.1| - 2.9 7.6 10.7 3.9 7.2 7.4 1.2 1 0 0 1 1 1 0 Bacterial export proteins, family 3 DUF2721 PF11026.3 gi|218884752|ref|YP_002429134.1| - 3.1 7.4 7.5 5.2 6.7 4.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) Herpes_LMP1 PF05297.6 gi|218884752|ref|YP_002429134.1| - 5.4 5.8 7.2 5.5 5.8 5.0 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF3671 PF12420.3 gi|218884752|ref|YP_002429134.1| - 7.5 6.5 8.7 8.7 6.3 6.0 1.3 1 0 0 1 1 1 0 Protein of unknown function AA_kinase PF00696.23 gi|218884753|ref|YP_002429135.1| - 3e-26 92.4 0.0 3.6e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family DUF2029 PF09594.5 gi|218884754|ref|YP_002429136.1| - 1e-08 35.0 21.4 1e-08 35.0 14.8 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF2029) Aldedh PF00171.17 gi|218884755|ref|YP_002429137.1| - 1.3e-119 399.5 0.0 1.5e-119 399.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|218884755|ref|YP_002429137.1| - 6.7e-06 25.0 0.0 1.5e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) TP_methylase PF00590.15 gi|218884756|ref|YP_002429138.1| - 4.4e-20 72.2 0.0 5.2e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Cellulase-like PF12876.2 gi|218884756|ref|YP_002429138.1| - 0.09 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-binding cellulase-like ABC_tran PF00005.22 gi|218884757|ref|YP_002429139.1| - 5.9e-24 84.9 0.1 7.6e-24 84.5 0.1 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|218884757|ref|YP_002429139.1| - 1.3e-18 67.9 0.9 6.1e-16 59.2 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|218884757|ref|YP_002429139.1| - 1.6e-07 30.7 0.9 0.00077 18.6 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|218884757|ref|YP_002429139.1| - 5.6e-07 29.0 0.0 0.00039 19.7 0.0 2.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|218884757|ref|YP_002429139.1| - 1.8e-05 25.1 0.0 2.4e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|218884757|ref|YP_002429139.1| - 3.2e-05 24.0 0.0 4.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|218884757|ref|YP_002429139.1| - 0.00022 19.9 0.0 0.00041 19.0 0.0 1.4 1 0 0 1 1 1 1 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|218884757|ref|YP_002429139.1| - 0.00027 20.4 1.3 0.00028 20.3 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|218884757|ref|YP_002429139.1| - 0.001 18.9 0.1 0.024 14.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|218884757|ref|YP_002429139.1| - 0.0018 18.4 0.1 0.012 15.7 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|218884757|ref|YP_002429139.1| - 0.0053 16.3 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|218884757|ref|YP_002429139.1| - 0.0054 17.5 0.1 0.0081 16.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|218884757|ref|YP_002429139.1| - 0.0064 16.8 0.1 0.023 15.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|218884757|ref|YP_002429139.1| - 0.0071 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_19 PF13245.1 gi|218884757|ref|YP_002429139.1| - 0.008 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|218884757|ref|YP_002429139.1| - 0.0087 16.0 0.1 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|218884757|ref|YP_002429139.1| - 0.0094 15.3 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_33 PF13671.1 gi|218884757|ref|YP_002429139.1| - 0.012 15.4 0.0 0.028 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|218884757|ref|YP_002429139.1| - 0.012 15.3 0.1 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_22 PF13401.1 gi|218884757|ref|YP_002429139.1| - 0.024 14.7 0.1 0.041 14.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|218884757|ref|YP_002429139.1| - 0.038 13.0 0.0 0.072 12.1 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|218884757|ref|YP_002429139.1| - 0.048 13.0 0.0 0.089 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.6 gi|218884757|ref|YP_002429139.1| - 0.073 11.7 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain MobB PF03205.9 gi|218884757|ref|YP_002429139.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|218884757|ref|YP_002429139.1| - 0.16 11.1 0.1 0.22 10.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3584 PF12128.3 gi|218884757|ref|YP_002429139.1| - 0.17 9.2 0.1 0.22 8.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FecCD PF01032.13 gi|218884758|ref|YP_002429140.1| - 4.3e-60 203.1 31.9 5.4e-60 202.8 22.1 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|218884759|ref|YP_002429141.1| - 2.5e-19 69.3 0.0 3.6e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein N_methyl_2 PF13544.1 gi|218884760|ref|YP_002429142.1| - 0.005 16.2 0.2 0.012 15.0 0.1 1.6 1 0 0 1 1 1 1 Type IV pilin N-term methylation site GFxxxE Isochorismatase PF00857.15 gi|218884761|ref|YP_002429143.1| - 5.1e-44 150.2 0.0 5.6e-44 150.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.1 gi|218884761|ref|YP_002429143.1| - 0.025 13.9 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ELFV_dehydrog PF00208.16 gi|218884762|ref|YP_002429144.1| - 9.2e-75 251.3 0.3 1.2e-74 250.9 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|218884762|ref|YP_002429144.1| - 3.1e-46 156.2 0.0 5.5e-46 155.3 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|218884762|ref|YP_002429144.1| - 0.00015 21.0 0.1 0.00031 19.9 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|218884762|ref|YP_002429144.1| - 0.0025 17.6 0.7 0.027 14.3 0.2 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.7 gi|218884762|ref|YP_002429144.1| - 0.0062 14.0 0.0 0.0088 13.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase NAD_binding_7 PF13241.1 gi|218884762|ref|YP_002429144.1| - 0.016 15.4 0.1 0.035 14.3 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.16 gi|218884762|ref|YP_002429144.1| - 0.033 14.0 0.6 0.066 13.0 0.1 1.7 2 0 0 2 2 2 0 ThiF family AlaDh_PNT_C PF01262.16 gi|218884762|ref|YP_002429144.1| - 0.063 12.8 0.8 0.11 12.0 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|218884762|ref|YP_002429144.1| - 0.099 12.5 0.4 0.18 11.6 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|218884762|ref|YP_002429144.1| - 0.23 11.5 1.1 2 8.5 0.1 2.7 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase DUF504 PF04457.7 gi|218884763|ref|YP_002429145.1| - 1.2e-11 44.5 3.1 2e-11 43.8 2.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) DPM3 PF08285.6 gi|218884764|ref|YP_002429146.1| - 0.0039 16.9 3.5 0.0044 16.8 2.4 1.0 1 0 0 1 1 1 1 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) PsbI PF02532.9 gi|218884764|ref|YP_002429146.1| - 0.031 13.8 5.5 0.031 13.8 3.8 1.9 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) DUF4149 PF13664.1 gi|218884764|ref|YP_002429146.1| - 0.045 13.8 3.7 0.052 13.6 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) DUF3139 PF11337.3 gi|218884764|ref|YP_002429146.1| - 0.046 14.0 5.2 0.55 10.5 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) DUF4131 PF13567.1 gi|218884764|ref|YP_002429146.1| - 0.12 11.7 0.5 0.13 11.6 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Reticulon PF02453.12 gi|218884764|ref|YP_002429146.1| - 0.16 11.5 6.5 0.19 11.3 4.5 1.0 1 0 0 1 1 1 0 Reticulon DUF3278 PF11683.3 gi|218884764|ref|YP_002429146.1| - 0.25 11.3 3.6 0.27 11.2 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) DUF3043 PF11241.3 gi|218884764|ref|YP_002429146.1| - 0.49 9.9 2.1 0.54 9.8 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) VirB3 PF05101.8 gi|218884764|ref|YP_002429146.1| - 1.5 8.8 4.5 2.2 8.3 2.8 1.6 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF2393 PF09624.5 gi|218884764|ref|YP_002429146.1| - 1.6 8.2 5.6 5.6 6.4 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2393) DUF3671 PF12420.3 gi|218884764|ref|YP_002429146.1| - 3.2 7.7 7.8 4.2 7.3 5.4 1.1 1 0 0 1 1 1 0 Protein of unknown function VIT1 PF01988.14 gi|218884764|ref|YP_002429146.1| - 3.6 6.9 6.8 4.1 6.8 4.7 1.1 1 0 0 1 1 1 0 VIT family OrfB_Zn_ribbon PF07282.6 gi|218884765|ref|YP_002429147.1| - 0.0012 18.4 0.1 0.0038 16.8 0.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain polyprenyl_synt PF00348.12 gi|218884766|ref|YP_002429148.1| - 1.9e-46 158.0 0.0 4.5e-45 153.5 0.0 2.1 1 1 0 1 1 1 1 Polyprenyl synthetase DUF2363 PF10155.4 gi|218884766|ref|YP_002429148.1| - 0.013 15.4 0.4 0.022 14.6 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2363) GcpE PF04551.9 gi|218884766|ref|YP_002429148.1| - 0.088 11.6 0.1 0.17 10.6 0.0 1.4 2 0 0 2 2 2 0 GcpE protein OMPdecase PF00215.19 gi|218884767|ref|YP_002429149.1| - 7.4e-25 87.6 1.5 8.7e-25 87.4 1.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|218884767|ref|YP_002429149.1| - 2.5e-05 23.4 0.6 3.3e-05 23.0 0.4 1.5 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|218884767|ref|YP_002429149.1| - 2.7e-05 23.7 0.2 6.3e-05 22.5 0.2 1.7 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PEP_mutase PF13714.1 gi|218884767|ref|YP_002429149.1| - 0.00087 18.5 0.3 0.042 13.0 0.1 2.2 1 1 1 2 2 2 1 Phosphoenolpyruvate phosphomutase His_biosynth PF00977.16 gi|218884767|ref|YP_002429149.1| - 0.0009 18.5 0.4 0.0015 17.8 0.3 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.9 gi|218884767|ref|YP_002429149.1| - 0.001 18.0 0.1 0.0018 17.2 0.1 1.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|218884767|ref|YP_002429149.1| - 0.0018 17.5 3.3 0.0018 17.5 0.4 2.0 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|218884767|ref|YP_002429149.1| - 0.007 15.2 0.3 0.0095 14.8 0.2 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|218884767|ref|YP_002429149.1| - 0.013 14.5 0.3 0.027 13.6 0.2 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|218884767|ref|YP_002429149.1| - 0.024 13.5 1.0 0.028 13.2 0.7 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.9 gi|218884767|ref|YP_002429149.1| - 0.04 13.0 1.0 0.071 12.1 0.2 1.6 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG TIM-br_sig_trns PF09370.5 gi|218884767|ref|YP_002429149.1| - 0.059 12.4 0.4 0.36 9.8 0.1 2.3 2 1 0 2 2 2 0 TIM-barrel signal transduction protein tRNA-synt_1b PF00579.20 gi|218884768|ref|YP_002429150.1| - 3.7e-45 154.2 0.0 6.5e-45 153.4 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|218884768|ref|YP_002429150.1| - 0.017 13.8 0.0 0.37 9.4 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (K) SIS PF01380.17 gi|218884769|ref|YP_002429151.1| - 1.6e-37 128.0 0.8 2.7e-25 88.4 0.7 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|218884769|ref|YP_002429151.1| - 1.5e-16 60.5 0.0 3.1e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|218884769|ref|YP_002429151.1| - 5.5e-11 42.2 0.0 1.1e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|218884769|ref|YP_002429151.1| - 2.8e-10 39.4 0.0 3.9e-09 35.6 0.0 2.2 1 1 1 2 2 2 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|218884769|ref|YP_002429151.1| - 9.5e-05 22.1 1.3 0.00018 21.2 0.5 1.8 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|218884769|ref|YP_002429151.1| - 0.0018 17.0 0.0 0.0024 16.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II ParA PF10609.4 gi|218884769|ref|YP_002429151.1| - 0.041 13.7 0.3 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 ParA/MinD ATPase like GGDN PF05165.7 gi|218884770|ref|YP_002429152.1| - 0.00058 18.9 0.0 0.018 14.0 0.0 2.5 2 1 0 2 2 2 2 GGDN family Toxin_64 PF15542.1 gi|218884770|ref|YP_002429152.1| - 0.053 14.0 0.0 0.1 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative toxin 64 Snf7 PF03357.16 gi|218884772|ref|YP_002429154.1| - 0.00081 18.8 0.8 0.0015 17.9 0.0 1.8 2 0 0 2 2 2 1 Snf7 Sigma70_r4_2 PF08281.7 gi|218884772|ref|YP_002429154.1| - 0.0069 15.8 0.5 0.02 14.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Cor1 PF04803.7 gi|218884772|ref|YP_002429154.1| - 0.052 13.2 2.3 4.7 6.9 0.4 2.6 2 1 1 3 3 3 0 Cor1/Xlr/Xmr conserved region LOH1CR12 PF10158.4 gi|218884772|ref|YP_002429154.1| - 0.16 11.8 1.2 0.39 10.5 0.3 1.9 2 1 0 2 2 2 0 Tumour suppressor protein AIRS_C PF02769.17 gi|218884774|ref|YP_002429156.1| - 2.4e-18 66.5 0.2 4.1e-18 65.8 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|218884774|ref|YP_002429156.1| - 5.4e-09 36.1 0.1 1.4e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TatD_DNase PF01026.16 gi|218884775|ref|YP_002429157.1| - 2.8e-19 69.3 0.0 3.3e-19 69.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase ABC_cobalt PF09819.4 gi|218884776|ref|YP_002429158.1| - 4e-33 114.1 6.2 4e-33 114.1 4.3 1.7 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component CytB6-F_Fe-S PF08802.5 gi|218884776|ref|YP_002429158.1| - 3.1 7.8 11.5 13 5.9 0.7 3.6 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit DUF3060 PF11259.3 gi|218884777|ref|YP_002429159.1| - 0.017 14.7 0.6 0.041 13.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3060) NAD_synthase PF02540.12 gi|218884778|ref|YP_002429160.1| - 1.8e-73 246.3 0.0 2.2e-73 246.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|218884778|ref|YP_002429160.1| - 4.9e-05 22.0 0.0 0.0008 18.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|218884778|ref|YP_002429160.1| - 0.065 12.2 0.0 0.091 11.7 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase QueC PF06508.8 gi|218884778|ref|YP_002429160.1| - 0.15 11.3 0.0 0.45 9.7 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|218884778|ref|YP_002429160.1| - 0.16 11.4 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase AMMECR1 PF01871.12 gi|218884780|ref|YP_002429162.1| - 2.4e-52 176.4 0.0 2.9e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Mut7-C PF01927.11 gi|218884781|ref|YP_002429163.1| - 8.4e-45 152.3 0.0 9.9e-45 152.1 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain CBS PF00571.23 gi|218884782|ref|YP_002429164.1| - 4.2e-29 100.0 2.0 9.1e-09 34.9 0.0 4.1 4 0 0 4 4 4 4 CBS domain DUF1788 PF08747.6 gi|218884782|ref|YP_002429164.1| - 0.018 14.9 0.1 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1788) Zds_C PF08632.5 gi|218884782|ref|YP_002429164.1| - 0.048 13.0 0.0 0.82 9.1 0.0 2.3 2 0 0 2 2 2 0 Activator of mitotic machinery Cdc14 phosphatase activation C-term CBS PF00571.23 gi|218884783|ref|YP_002429165.1| - 4.3e-51 170.4 11.3 1.1e-15 57.1 0.9 4.2 4 0 0 4 4 4 4 CBS domain Resolvase PF00239.16 gi|218884784|ref|YP_002429166.1| - 4.6e-21 75.1 0.9 6.1e-21 74.7 0.6 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|218884784|ref|YP_002429166.1| - 3.1e-06 27.3 0.0 5.8e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|218884784|ref|YP_002429166.1| - 0.0012 18.3 0.0 0.0038 16.7 0.0 1.9 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.1 gi|218884784|ref|YP_002429166.1| - 0.0037 17.0 0.0 0.0069 16.1 0.0 1.5 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.1 gi|218884784|ref|YP_002429166.1| - 0.0055 16.3 0.0 0.014 15.0 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|218884784|ref|YP_002429166.1| - 0.0096 15.9 0.8 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|218884784|ref|YP_002429166.1| - 0.086 12.9 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DEAD PF00270.24 gi|218884784|ref|YP_002429166.1| - 0.13 11.7 0.0 0.5 9.8 0.0 1.9 1 1 0 1 1 1 0 DEAD/DEAH box helicase OrfB_Zn_ribbon PF07282.6 gi|218884785|ref|YP_002429167.1| - 2.2e-21 75.2 0.0 4.5e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain